title: "Test RNAseq project"
subtitle: "This part can be overridden by text about the project
and the date etc.
"
intro_text: False

custom_logo: '/software/bi/biocore_tools/logo/biocore-logo.png'
custom_logo_url: 'https://biocore.crg.eu'
custom_logo_title: 'Bioinformatics Core Facility @ CRG'

report_header_info:
    - Contact E-mail: 'luca.cozzuto@crg.eu'
    - Application Type: 'RNA-seq'
    - Sequencing Platform: 'HiSeq 2500 High Output V4'

table_columns_visible:
    QualiMap:
        5_3_bias: False

read_count_multiplier: 0.001
read_count_prefix: 'K'
read_count_desc: 'thousands'

module_order:
 - fastqc:
        name: 'FastQC (raw)'
        path_filters:
            - '*_read*_fastqc.zip'
 - fastqc:
        name: 'FastQC (trimmed)'
        info: 'This section of the report shows FastQC results after adapter trimming.'
        target: ''
        path_filters:
            - '*-trimmed-pair*_fastqc.zip'
 - skewer
 - qualimap
 - tools