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If you use plots from MultiQC in a publication or presentation, please cite:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

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About MultiQC

This report was generated using MultiQC, version 1.3.dev0 (f36d735)

You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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Report generated on 2017-10-11, 15:34 based on data in: /nfs/users/project/sacalalengua/test_saca2/trimmed/seqs_ori

General Statistics

Showing ⁴⁷/₄₇ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
21101-HM782D_S30_L001_R1_001_50	93.4%	53%	251 bp	42%	0.2
21101-HM782D_S30_L001_R2_001_50	90.4%	51%	251 bp	33%	0.2
21101-HM783D_S31_L001_R1_001_50	94.8%	54%	251 bp	42%	0.3
21101-HM783D_S31_L001_R2_001_50	91.9%	52%	251 bp	42%	0.3
data1_150619_SLL-0115-0252_S1_L001_R1_001_50	91.4%	55%	251 bp	50%	0.1
data1_150619_SLL-0115-0252_S1_L001_R2_001_50	83.8%	52%	251 bp	50%	0.1
data1_150619_SLL-0115-0296_S2_L001_R1_001_50	90.8%	55%	251 bp	50%	0.1
data1_150619_SLL-0115-0296_S2_L001_R2_001_50	83.6%	53%	251 bp	50%	0.1
data1_150619_SLL-0115-0338_S3_L001_R1_001_50	91.5%	55%	251 bp	42%	0.1
data1_150619_SLL-0115-0338_S3_L001_R2_001_50	83.4%	53%	251 bp	42%	0.1
data1_150619_SLL-0115-0357_S4_L001_R1_001_50	91.5%	55%	251 bp	42%	0.1
data1_150619_SLL-0115-0357_S4_L001_R2_001_50	84.1%	53%	251 bp	42%	0.1
data1_150619_SLL-0115-0363_S5_L001_R1_001_50	90.0%	55%	251 bp	42%	0.1
data1_150619_SLL-0115-0363_S5_L001_R2_001_50	83.7%	53%	251 bp	42%	0.1
data2_150623_HM-782D3_S95_L001_R1_001_50	92.6%	53%	251 bp	42%	0.1
data2_150623_HM-782D3_S95_L001_R2_001_50	90.8%	52%	251 bp	50%	0.1
data2_150623_HM-782D4_S191_L001_R1_001_50	92.5%	53%	251 bp	50%	0.1
data2_150623_HM-782D4_S191_L001_R2_001_50	91.1%	52%	251 bp	42%	0.1
data2_150623_HM-783D3_S96_L001_R2_001_50	92.1%	53%	251 bp	42%	0.1
data2_150623_HM-783D4_S192_L001_R1_001_50	94.0%	54%	251 bp	42%	0.1
data2_150623_HM-783D4_S192_L001_R2_001_50	92.2%	53%	251 bp	50%	0.1
data3_150702_HM-782D_S95_L001_R1_001_50	91.0%	54%	251 bp	58%	0.1
data3_150702_HM-782D_S95_L001_R2_001_50	83.2%	53%	251 bp	42%	0.1
data3_150702_HM-783D_S96_L001_R1_001_50	92.9%	55%	251 bp	50%	0.1
data3_150702_HM-783D_S96_L001_R2_001_50	83.9%	54%	251 bp	50%	0.1
data4ra_150706_HM-782D_S95_L001_R1_001_50	93.6%	53%	251 bp	50%	0.2
data4ra_150706_HM-782D_S95_L001_R2_001_50	91.4%	52%	251 bp	42%	0.2
data4ra_150706_HM-783D_S191_L001_R1_001_50	94.5%	54%	251 bp	42%	0.1
data4ra_150706_HM-783D_S191_L001_R2_001_50	92.7%	53%	251 bp	50%	0.1
data5ra_150713_HM-782D_S95_L001_R1_001_50	92.5%	54%	251 bp	50%	0.1
data5ra_150713_HM-783D_S191_L001_R1_001_50	95.0%	54%	251 bp	50%	0.1
data5ra_150713_HM-783D_S191_L001_R2_001_50	88.0%	53%	251 bp	50%	0.1
data6ra_150717_HM-782D_S95_L001_R1_001_50	90.9%	54%	251 bp	50%	0.1
data6ra_150717_HM-782D_S95_L001_R2_001_50	83.1%	52%	251 bp	50%	0.1
data6ra_150717_HM-783D_S191_L001_R1_001_50	93.8%	54%	251 bp	50%	0.1
data6ra_150717_HM-783D_S191_L001_R2_001_50	85.9%	53%	251 bp	67%	0.1
data7_150724_HM-782D_S95_L001_R1_001_50	91.4%	53%	251 bp	50%	0.1
data7_150724_HM-782D_S95_L001_R2_001_50	81.5%	52%	251 bp	50%	0.1
data7_150724_HM-783D_S190_L001_R1_001_50	92.9%	54%	251 bp	42%	0.1
data7_150724_HM-783D_S190_L001_R2_001_50	84.2%	53%	251 bp	50%	0.1
data8_150727_HM-782D_S95_L001_R1_001_50	93.4%	53%	251 bp	33%	0.1
data8_150727_HM-783D_S190_L001_R1_001_50	94.6%	54%	251 bp	50%	0.1
data8_150727_HM-783D_S190_L001_R2_001_50	90.5%	53%	251 bp	50%	0.1
data9_150907_HM-782D_S52_L001_R1_001_50	94.0%	53%	251 bp	42%	0.2
data9_150907_HM-782D_S52_L001_R2_001_50	91.1%	52%	251 bp	42%	0.2
data9_150907_HM-783D_S53_L001_R1_001_50	96.5%	54%	251 bp	50%	0.4
data9_150907_HM-783D_S53_L001_R2_001_50	93.8%	53%	251 bp	42%	0.4

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Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Quality Histograms

The mean quality value across each base position in the read. See the FastQC help.

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

Click a sample row to see a line plot for that dataset.

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Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

Per Base N Content

The percentage of base calls at each position for which an N was called. See the FastQC help.

Sequence Length Distribution

All samples have sequences of a single length (251bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence. See the FastQC help.

Overrepresented sequences

The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

No samples found with any adapter contamination > 0.1%

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About MultiQC

General Statistics

General Statistics: Columns

FastQC

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

Rollover for sample name

Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

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