SnpEff: Variant analysis
Genome | brucella_suis_cita_364_fix |
Date | 2025-02-24 16:30 |
SnpEff version | SnpEff 5.2 (build 2023-09-29 06:17), by Pablo Cingolani |
Command line arguments | SnpEff -csvStats CRG4_fix_snp.snpEff_summary.csv -htmlStats CRG4_fix_snp.snpEff_summary.html brucella_suis_cita_364_fix CRG4_fix_snp.vcf |
Warnings | 1,014 |
Errors | 0 |
Number of lines (input file) | 1,136 |
Number of variants (before filter) | 1,136 |
Number of not variants (i.e. reference equals alternative) |
0 |
Number of variants processed (i.e. after filter and non-variants) |
1,136 |
Number of known variants (i.e. non-empty ID) |
0 ( 0% ) |
Number of multi-allelic VCF entries (i.e. more than two alleles) |
0 |
Number of effects | 12,302 |
Genome total length | 3,328,972 |
Genome effective length | 3,328,972 |
Variant rate | 1 variant every 2,930 bases |
Chromosome | Length | Variants | Variants rate |
---|---|---|---|
OOAJICEE_1 | 1,927,594 | 612 | 3,149 |
OOAJICEE_2 | 1,401,378 | 524 | 2,674 |
Total | 3,328,972 | 1,136 | 2,930 |
Type | Total |
---|---|
SNP | 781 |
MNP | 0 |
INS | 305 |
DEL | 50 |
MIXED | 0 |
INV | 0 |
DUP | 0 |
BND | 0 |
INTERVAL | 0 |
Total | 1,136 |
Type (alphabetical order) | Count | Percent | |
---|---|---|---|
HIGH | 136 | 1.106% | |
LOW | 256 | 2.081% | |
MODERATE | 365 | 2.967% | |
MODIFIER | 11,545 | 93.847% |
Type (alphabetical order) | Count | Percent | |
---|---|---|---|
MISSENSE | 358 | 57.649% | |
NONSENSE | 6 | 0.966% | |
SILENT | 257 | 41.385% |
Missense / Silent ratio: 1.393
Type | Region | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
Quality:
Insertions and deletions length:
Min | 0 |
---|---|
Max | 1 |
Mean | 0.141 |
Median | 0 |
Standard deviation | 0.348 |
Values | 0,1 |
Count | 305,50 |
A | C | G | T | |
---|---|---|---|---|
A | 0 | 22 | 161 | 4 |
C | 26 | 0 | 55 | 161 |
G | 134 | 50 | 0 | 20 |
T | 6 | 120 | 22 | 0 |
Note: This Ts/Tv ratio is a 'raw' ratio (ratio of observed events).
Transitions | 576 |
---|---|
Transversions | 205 |
Ts/Tv ratio | 2.8098 |
All variants:
Sample ,Total Transitions ,576,576 Transversions ,205,205 Ts/Tv ,2.810,2.810
Only known variants (i.e. the ones having a non-empty ID field):
No results available (empty input?)
Min | 1 |
---|---|
Max | 1 |
Mean | 1 |
Median | 1 |
Standard deviation | 0 |
Values | 1 |
Count | 1136 |
Sample_names Reference Het Hom Missing
How to read this table:
- Rows are reference codons and columns are changed codons. E.g. Row 'AAA' column 'TAA' indicates how many 'AAA' codons have been replaced by 'TAA' codons.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).
- Rows are reference codons and columns are changed codons. E.g. Row 'AAA' column 'TAA' indicates how many 'AAA' codons have been replaced by 'TAA' codons.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).
- | AAA | AAC | AAG | AAT | ACA | ACC | ACG | ACT | AGC | AGG | AGT | ATA | ATC | ATG | ATT | CAA | CAC | CAG | CAT | CCA | CCC | CCG | CCT | CGA | CGC | CGG | CGT | CTA | CTC | CTG | CTT | GAA | GAC | GAG | GAT | GCA | GCC | GCG | GCT | GGA | GGC | GGG | GGT | GTA | GTC | GTG | GTT | TAA | TAC | TAG | TAT | TCA | TCC | TCG | TCT | TGA | TGC | TGG | TGT | TTA | TTC | TTG | TTT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
- |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
AAA | 3 |   |   | 4 |   | 1 |   |   |   |   |   |   | 1 |   |   |   | 4 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
AAC | 1 |   |   | 1 | 2 |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
AAG | 1 | 3 | 2 |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
AAT | 2 | 1 | 1 |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 4 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
ACA |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
ACC | 1 |   | 1 |   |   |   |   | 4 | 2 | 1 |   |   |   | 4 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 11 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |
ACG | 1 |   |   |   |   | 2 | 1 |   | 1 |   | 2 |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
ACT |   |   |   |   |   |   | 4 | 1 |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
AGC | 1 |   | 3 | 1 |   |   | 4 |   |   |   | 1 | 4 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   | 8 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
AGG |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
AGT | 1 |   |   |   | 1 |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
ATA | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   | 5 | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
ATC | 3 |   |   |   | 1 |   | 1 |   | 1 | 1 |   |   |   |   | 2 | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
ATG | 2 |   |   |   |   |   |   | 6 |   |   |   |   |   | 1 |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 5 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
ATT | 1 |   |   |   |   |   |   |   | 1 |   |   |   |   | 3 | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
CAA | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 4 |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
CAC |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
CAG | 2 |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   | 7 | 4 |   |   | 4 |   | 2 |   | 7 |   | 2 |   | 3 |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
CAT | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |
CCA | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 5 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
CCC | 2 |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 | 1 | 2 | 2 |   |   |   |   |   | 2 |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |
CCG | 3 |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   | 1 |   | 6 | 1 |   |   |   |   |   |   |   |   | 6 |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
CCT | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 | 2 | 1 |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
CGA | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
CGC | 4 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 7 |   |   |   | 1 |   |   | 2 |   | 2 | 7 |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 4 |   |   |   |   |   |   |
CGG | 1 |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   | 1 |   |   |   | 1 |   | 1 | 2 | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |
CGT | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   | 5 | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
CTA |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 | 6 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
CTC | 1 |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   | 1 |   | 1 |   | 4 |   | 1 |   | 3 |   |   | 2 | 7 |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |
CTG | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 5 |   |   |   | 1 |   | 3 | 1 |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |
CTT | 4 |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   | 1 |   |   |   | 1 |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |
GAA | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 4 |   | 1 |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
GAC | 1 |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 | 9 |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
GAG | 4 |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   | 24 |   |   |   | 1 |   |   |   | 2 |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |
GAT | 1 |   |   |   | 5 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 8 |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
GCA | 3 |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   | 8 | 11 | 2 | 1 |   |   |   | 2 | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
GCC | 7 |   |   |   |   |   | 6 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   | 2 | 1 | 13 |   | 5 |   |   |   | 4 |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |
GCG | 1 |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   | 7 |   |   | 1 |   |   | 2 |   |   |   | 13 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
GCT | 2 |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 5 |   |   |   |   |   |   |   |   |   | 2 |   | 4 | 2 |   |   | 6 |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   | 4 |   |   |   |   |   |   |
GGA | 1 |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   | 2 |   |   |   |   | 1 | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
GGC | 4 |   |   |   |   |   |   |   |   | 7 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   | 5 |   |   |   | 2 |   |   | 1 |   | 4 | 18 |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
GGG | 3 |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   | 4 | 1 |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
GGT |   |   |   |   |   |   |   |   |   |   | 1 | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   | 2 |   | 9 | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
GTA |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
GTC | 1 |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   | 4 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |
GTG | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   | 7 |   |   |   |   | 1 |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
GTT | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 6 |   |   |   |   |   |   |   | 2 |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
TAA |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   | 5 |   |   |   |   |   |   |   |
TAC |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   | 2 |   |   |   |   |   |   |
TAG |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
TAT | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 4 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 | 1 |   |   |   |   |   |   |   |   |   | 1 | 3 |   |   |   |
TCA | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 5 |   |   |   |   |   |   |   |   |   |
TCC | 2 |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   | 1 | 3 |   | 1 |   |   |   | 1 |   |   |
TCG | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   | 4 | 1 |   |   |   |   |   |   |   |   | 4 |   |
TCT | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 5 |   |   |   |   |   |   |   |   |   | 1 |
TGA |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   | 1 | 1 |   | 1 |   |   |   |
TGC |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 4 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |
TGG |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 5 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   | 2 | 2 |   |   |   |   |   |   |
TGT | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   | 1 |   |   |   |   |   |   |
TTA | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 2 |   |
TTC | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 3 |
TTG | 3 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 4 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   | 2 |   |   | 1 |
TTT |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 | 1 | 1 |
How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).
* | - | ? | A | C | D | E | F | G | H | I | K | L | M | N | P | Q | R | S | T | V | W | Y | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
* | 7 |   |   |   | 1 |   | 1 |   |   |   |   |   | 1 |   |   |   |   |   |   |   |   | 1 |   |
- |   |   | 105 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
? |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
A |   | 13 |   | 51 | 4 | 3 | 1 |   | 17 |   |   |   |   |   |   | 1 |   | 5 | 1 | 13 | 20 |   |   |
C |   | 1 |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   | 6 |   |   |   | 2 | 1 |
D |   | 2 |   |   |   | 17 | 2 |   | 5 | 1 |   |   |   |   | 6 |   |   |   |   |   |   |   |   |
E | 1 | 6 |   | 2 |   |   | 29 |   | 5 |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |
F |   | 1 |   |   |   |   |   | 5 |   |   |   |   | 2 |   |   |   |   |   |   |   | 1 |   |   |
G |   | 8 |   | 6 |   | 6 | 4 |   | 43 |   |   |   |   |   |   |   |   | 4 | 9 |   | 1 |   |   |
H |   | 2 |   |   |   | 1 |   |   |   | 1 |   |   |   |   |   |   |   | 4 |   |   |   |   | 2 |
I |   | 5 |   |   |   |   |   |   |   |   | 6 |   | 1 | 9 | 1 |   |   |   | 1 | 3 | 5 |   |   |
K | 1 | 4 |   |   |   |   | 4 |   |   |   | 1 | 7 |   |   | 2 |   | 4 | 2 |   | 1 |   |   |   |
L |   | 10 |   |   |   |   |   | 4 |   | 1 | 2 |   | 34 |   |   | 11 |   | 6 | 1 |   | 6 |   |   |
M |   | 2 |   |   |   |   |   |   |   |   | 2 |   | 1 |   |   |   |   |   |   | 6 | 5 |   |   |
N |   | 3 |   |   |   | 7 |   |   |   |   |   | 2 |   |   | 3 |   |   |   | 2 | 1 |   |   |   |
P |   | 9 |   | 2 |   |   |   |   |   |   |   |   | 9 |   |   | 22 | 1 |   | 3 | 2 |   |   |   |
Q |   | 4 |   |   |   |   | 1 |   |   | 4 |   | 1 | 3 |   |   | 7 | 11 | 9 |   |   |   |   |   |
R |   | 8 |   |   | 4 |   |   |   | 1 | 9 |   |   | 1 |   |   | 2 | 3 | 22 |   | 1 |   | 1 |   |
S | 1 | 11 |   |   | 1 |   | 1 | 2 | 10 |   |   | 1 | 4 |   | 4 | 5 |   | 1 | 25 | 5 |   |   |   |
T |   | 2 |   | 19 |   |   |   |   |   |   | 4 |   |   | 3 | 1 |   |   | 2 | 3 | 17 |   |   |   |
V |   | 5 |   | 14 |   |   |   | 1 | 1 |   | 5 |   | 10 | 1 |   |   |   |   |   |   | 6 |   |   |
W | 3 |   |   |   | 2 |   |   |   |   |   |   |   |   |   |   |   |   | 5 |   |   |   |   |   |
Y | 3 | 2 |   |   | 3 |   |   |   |   | 7 |   |   | 3 |   |   |   |   |   |   |   |   |   | 2 |
OOAJICEE_1, Position,0,10000,20000,30000,40000,50000,60000,70000,80000,90000,100000,110000,120000,130000,140000,150000,160000,170000,180000,190000,200000,210000,220000,230000,240000,250000,260000,270000,280000,290000,300000,310000,320000,330000,340000,350000,360000,370000,380000,390000,400000,410000,420000,430000,440000,450000,460000,470000,480000,490000,500000,510000,520000,530000,540000,550000,560000,570000,580000,590000,600000,610000,620000,630000,640000,650000,660000,670000,680000,690000,700000,710000,720000,730000,740000,750000,760000,770000,780000,790000,800000,810000,820000,830000,840000,850000,860000,870000,880000,890000,900000,910000,920000,930000,940000,950000,960000,970000,980000,990000,1000000,1010000,1020000,1030000,1040000,1050000,1060000,1070000,1080000,1090000,1100000,1110000,1120000,1130000,1140000,1150000,1160000,1170000,1180000,1190000,1200000,1210000,1220000,1230000,1240000,1250000,1260000,1270000,1280000,1290000,1300000,1310000,1320000,1330000,1340000,1350000,1360000,1370000,1380000,1390000,1400000,1410000,1420000,1430000,1440000,1450000,1460000,1470000,1480000,1490000,1500000,1510000,1520000,1530000,1540000,1550000,1560000,1570000,1580000,1590000,1600000,1610000,1620000,1630000,1640000,1650000,1660000,1670000,1680000,1690000,1700000,1710000,1720000,1730000,1740000,1750000,1760000,1770000,1780000,1790000,1800000,1810000,1820000,1830000,1840000,1850000,1860000,1870000,1880000,1890000,1900000,1910000,1920000 OOAJICEE_1,Count,1,2,1,1,2,2,20,3,3,2,1,0,0,2,4,2,3,3,4,5,4,3,1,0,1,0,3,0,13,1,1,1,5,0,3,3,3,3,3,17,5,3,1,0,2,3,1,0,1,2,3,1,4,2,3,0,1,4,5,3,3,2,2,1,6,21,1,0,4,5,1,5,4,5,3,2,2,1,5,8,2,4,2,4,4,4,4,23,1,5,2,7,4,3,3,4,5,2,3,0,2,7,4,5,1,3,5,5,7,0,1,2,1,5,2,1,1,1,2,2,1,3,3,0,1,2,8,1,1,2,1,2,3,3,4,5,4,1,2,3,3,2,2,3,31,3,3,1,2,2,2,3,2,0,2,1,5,5,2,2,4,0,1,7,1,5,6,1,3,4,5,2,4,1,2,5,1,5,2,6,4,2,1,3,1,4,1,0,2,5,1,1,2
OOAJICEE_2, Position,0,10000,20000,30000,40000,50000,60000,70000,80000,90000,100000,110000,120000,130000,140000,150000,160000,170000,180000,190000,200000,210000,220000,230000,240000,250000,260000,270000,280000,290000,300000,310000,320000,330000,340000,350000,360000,370000,380000,390000,400000,410000,420000,430000,440000,450000,460000,470000,480000,490000,500000,510000,520000,530000,540000,550000,560000,570000,580000,590000,600000,610000,620000,630000,640000,650000,660000,670000,680000,690000,700000,710000,720000,730000,740000,750000,760000,770000,780000,790000,800000,810000,820000,830000,840000,850000,860000,870000,880000,890000,900000,910000,920000,930000,940000,950000,960000,970000,980000,990000,1000000,1010000,1020000,1030000,1040000,1050000,1060000,1070000,1080000,1090000,1100000,1110000,1120000,1130000,1140000,1150000,1160000,1170000,1180000,1190000,1200000,1210000,1220000,1230000,1240000,1250000,1260000,1270000,1280000,1290000,1300000,1310000,1320000,1330000,1340000,1350000,1360000,1370000,1380000,1390000,1400000 OOAJICEE_2,Count,4,7,4,3,1,3,2,3,2,2,3,3,3,3,3,1,0,2,1,5,11,4,0,6,3,0,2,2,2,2,2,3,0,2,4,1,5,3,0,4,5,5,4,1,2,3,4,2,4,2,1,4,1,2,3,2,1,4,3,1,4,1,3,4,2,77,1,0,2,0,1,2,2,4,7,0,4,5,1,1,4,1,1,4,3,3,1,5,3,1,3,0,2,3,2,6,5,0,1,5,1,1,2,1,3,18,2,2,1,3,3,6,4,3,2,1,30,57,0,1,2,3,4,0,3,2,2,3,1,3,2,3,1,5,2,3,1,1,3,0,0
Details by gene
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