VEP run statistics
| VEP version (API) | 95 (95) |
| Annotation sources | Custom: gencode.vM20.annotation.gtf.gz (overlap) |
| Species | homo_sapiens |
| Command line options | --custom gencode.vM20.annotation.gtf.gz,,gtf --fasta genome.fa.gz --gtf gencode.vM20.annotation.gtf.gz --input_file 1790_pass.vcf.gz --output_file 1790.vep |
| Start time | 2019-03-14 11:51:13 |
| End time | 2019-03-14 11:54:21 |
| Run time | 188 seconds |
| Input file | 1790_pass.vcf.gz |
| Output file | 1790.vep |
General statistics
| Lines of input read | 7053 |
| Variants processed | 7027 |
| Variants filtered out | 0 |
| Novel / existing variants | - |
| Overlapped genes | 3941 |
| Overlapped transcripts | 11045 |
| Overlapped regulatory features | - |