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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 0.9 (f36d735)

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2017-06-02, 11:06 based on data in: /nfs/users/us/sequencing_analysis/Jochen_Hecht/2017-04-12-test_indrop_seq/analysis_inaki/work/c3/61059ed51a07ca51d55f38a7197ce6

        General Statistics

        Showing 3/3 rows and 4/4 columns.
        Sample Name5'-3' biasM Aligned% AlignedM Aligned
        Cow2_16861_GTCCGC
        0.13
        71.5
        90.8%
        68.1
        Cow4_16863_ACTGAT
        0.17
        66.5
        90.5%
        63.0
        Cow5_16864_ATTCCT
        0.14
        66.3
        89.3%
        62.4

        QualiMap

        QualiMap is a platform-independent application to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.

        Genomic origin of reads

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        Gene Coverage Profile

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        STAR

        STAR is an ultrafast universal RNA-seq aligner.

        Alignment Scores

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        Gene Counts

        Statistics from results generated using --quantMode GeneCounts. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.

           
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        MultiQC v0.9 (f36d735) - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, chroma.js, FileSaver.js and clipboard.js.