segment_juncs v2.0.14 (4318)
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[samopen] SAM header is present: 23 sequences.
Loading reference sequences...
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>> Performing segment-search:
Loading left segment hits...
done.
Loading right segment hits...
done.
	found 12843 potential split-segment junctions
	found 0 potential small deletions
	found 0 potential small insertions
>> Performing coverage-search:
 Map covers 67752363 bases
 Map covers 65601376 bases in sufficiently long segments
 Map contains 2141940 good islands
 105688490 are left looking bases
 105688307 are right looking bases
Collecting potential splice sites in islands
reporting synthetic splice junctions...
Examining donor-acceptor pairings in 1
Examining donor-acceptor pairings in 10
Examining donor-acceptor pairings in 11
Examining donor-acceptor pairings in 12
Examining donor-acceptor pairings in 13
Examining donor-acceptor pairings in 14
Examining donor-acceptor pairings in 15
Examining donor-acceptor pairings in 16
Examining donor-acceptor pairings in 17
Examining donor-acceptor pairings in 18
Examining donor-acceptor pairings in 19
Examining donor-acceptor pairings in 2
Examining donor-acceptor pairings in 20
Examining donor-acceptor pairings in 3
Examining donor-acceptor pairings in 4
Examining donor-acceptor pairings in 5
Examining donor-acceptor pairings in 6
Examining donor-acceptor pairings in 7
Examining donor-acceptor pairings in 8
Examining donor-acceptor pairings in 9
Examining donor-acceptor pairings in MT
Examining donor-acceptor pairings in X
Examining donor-acceptor pairings in Y
	found 3817762 potential junctions
Reported 3827860 total potential splices
Reporting 0 potential deletions...
Reporting 0 potential insertions...
Reporting potential fusions...