segment_juncs v2.0.14 (4318)
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[samopen] SAM header is present: 23 sequences.
Loading reference sequences...
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>> Performing segment-search:
Loading left segment hits...
done.
Loading right segment hits...
done.
	found 12497 potential split-segment junctions
	found 0 potential small deletions
	found 0 potential small insertions
>> Performing coverage-search:
 Map covers 72515897 bases
 Map covers 70189222 bases in sufficiently long segments
 Map contains 2317306 good islands
 114356933 are left looking bases
 114352848 are right looking bases
Collecting potential splice sites in islands
reporting synthetic splice junctions...
Examining donor-acceptor pairings in 1
Examining donor-acceptor pairings in 10
Examining donor-acceptor pairings in 11
Examining donor-acceptor pairings in 12
Examining donor-acceptor pairings in 13
Examining donor-acceptor pairings in 14
Examining donor-acceptor pairings in 15
Examining donor-acceptor pairings in 16
Examining donor-acceptor pairings in 17
Examining donor-acceptor pairings in 18
Examining donor-acceptor pairings in 19
Examining donor-acceptor pairings in 2
Examining donor-acceptor pairings in 20
Examining donor-acceptor pairings in 3
Examining donor-acceptor pairings in 4
Examining donor-acceptor pairings in 5
Examining donor-acceptor pairings in 6
Examining donor-acceptor pairings in 7
Examining donor-acceptor pairings in 8
Examining donor-acceptor pairings in 9
Examining donor-acceptor pairings in MT
Examining donor-acceptor pairings in X
Examining donor-acceptor pairings in Y
	found 5000000 potential junctions
Reported 5009628 total potential splices
Reporting 0 potential deletions...
Reporting 0 potential insertions...
Reporting potential fusions...