Settings:
  Output files: "A8CO_13065_CGTACG/tmp/segment_juncs.*.bt2"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 4 (one in 16)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  A8CO_13065_CGTACG/tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:02
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:03
bmax according to bmaxDivN setting: 37370869
Using parameters --bmax 28028152 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 28028152 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:03
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:01
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:01
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:06
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.86854e+07 (target: 28028151)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:01
  Sorting block of length 20267986
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 20267987
Getting block 2 of 8
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:01
  Sorting block of length 27250651
  (Using difference cover)
  Sorting block time: 00:00:15
Returning block of 27250652
Getting block 3 of 8
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 17793931
  (Using difference cover)
  Sorting block time: 00:00:09
Returning block of 17793932
Getting block 4 of 8
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 27257879
  (Using difference cover)
  Sorting block time: 00:00:13
Returning block of 27257880
Getting block 5 of 8
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 7599699
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 7599700
Getting block 6 of 8
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 21133063
  (Using difference cover)
  Sorting block time: 00:00:13
Returning block of 21133064
Getting block 7 of 8
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 23799177
  (Using difference cover)
  Sorting block time: 00:00:14
Returning block of 23799178
Getting block 8 of 8
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:01
  Sorting block of length 4381083
  (Using difference cover)
  Sorting block time: 00:00:02
Returning block of 4381084
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 46359210
fchr[G]: 75508494
fchr[T]: 104287363
fchr[$]: 149483476
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 246765239 bytes to primary EBWT file: A8CO_13065_CGTACG/tmp/segment_juncs.1.bt2
Wrote 37370876 bytes to secondary EBWT file: A8CO_13065_CGTACG/tmp/segment_juncs.2.bt2
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 149483476
    bwtLen: 149483477
    sz: 37370869
    bwtSz: 37370870
    lineRate: 6
    offRate: 4
    offMask: 0xfffffff0
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 9342718
    offsSz: 37370872
    lineSz: 64
    sideSz: 64
    sideBwtSz: 48
    sideBwtLen: 192
    numSides: 778560
    numLines: 778560
    ebwtTotLen: 49827840
    ebwtTotSz: 49827840
    color: 0
    reverse: 0
Total time for call to driver() for forward index: 00:02:06
Reading reference sizes
  Time reading reference sizes: 00:00:02
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:03
  Time to reverse reference sequence: 00:00:01
bmax according to bmaxDivN setting: 37370869
Using parameters --bmax 28028152 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 28028152 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:03
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:01
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:01
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:05
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 7; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:05
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 1; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:04
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 1; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:04
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 2.13548e+07 (target: 28028151)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 25597588
  (Using difference cover)
  Sorting block time: 00:00:11
Returning block of 25597589
Getting block 2 of 7
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:01
  Sorting block of length 18806323
  (Using difference cover)
  Sorting block time: 00:00:09
Returning block of 18806324
Getting block 3 of 7
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:01
  Sorting block of length 24742392
  (Using difference cover)
  Sorting block time: 00:00:14
Returning block of 24742393
Getting block 4 of 7
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 23350091
  (Using difference cover)
  Sorting block time: 00:00:11
Returning block of 23350092
Getting block 5 of 7
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 15883450
  (Using difference cover)
  Sorting block time: 00:00:11
Returning block of 15883451
Getting block 6 of 7
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 21983739
  (Using difference cover)
  Sorting block time: 00:00:15
Returning block of 21983740
Getting block 7 of 7
  Reserving size (28028152) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:01
  Sorting block of length 19119887
  (Using difference cover)
  Sorting block time: 00:00:07
Returning block of 19119888
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 46359210
fchr[G]: 75508494
fchr[T]: 104287363
fchr[$]: 149483476
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 246765239 bytes to primary EBWT file: A8CO_13065_CGTACG/tmp/segment_juncs.rev.1.bt2
Wrote 37370876 bytes to secondary EBWT file: A8CO_13065_CGTACG/tmp/segment_juncs.rev.2.bt2
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 149483476
    bwtLen: 149483477
    sz: 37370869
    bwtSz: 37370870
    lineRate: 6
    offRate: 4
    offMask: 0xfffffff0
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 9342718
    offsSz: 37370872
    lineSz: 64
    sideSz: 64
    sideBwtSz: 48
    sideBwtLen: 192
    numSides: 778560
    numLines: 778560
    ebwtTotLen: 49827840
    ebwtTotSz: 49827840
    color: 0
    reverse: 1
Total time for backward call to driver() for mirror index: 00:02:16