5334352 + 0 in total (QC-passed reads + QC-failed reads) 5262056 + 0 primary 72296 + 0 secondary 0 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 5334352 + 0 mapped (100.00% : N/A) 5262056 + 0 primary mapped (100.00% : N/A) 5262056 + 0 paired in sequencing 2631028 + 0 read1 2631028 + 0 read2 5262056 + 0 properly paired (100.00% : N/A) 5262056 + 0 with itself and mate mapped 0 + 0 singletons (0.00% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)