nextflow run -with-report -bg main.nf --config /users/bi/thermoso/projects/Adorsata/params.debug.blast.conf
cb7be8c7401ad9ef3007ae0accf08b58
4bc613c5-c483-48a7-8438-d79f0ed61468
These plots give an overview of the distribution of resource usage for each process.
This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.
task_id | process | tag | status | hash | allocated cpus | %cpu | allocated memory | %mem | vmem | rss | peak_vmem | peak_rss | allocated time | duration | realtime | script | exit | submit | start | complete | rchar | wchar | syscr | syscw | read_bytes | write_bytes | native_id | name | module | container | disk | attempt | scratch | workdir |
---|
task_id | process | tag | status | hash | allocated cpus | %cpu | allocated memory | %mem | vmem | rss | peak_vmem | peak_rss | allocated time | duration | realtime | script | exit | submit | start | complete | rchar | wchar | syscr | syscw | read_bytes | write_bytes | native_id | name | module | container | disk | attempt | scratch | workdir |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | cleanGFF | - | COMPLETED | 56/a8f598 | 1 | 98.7 | 24.000 GB | 0.1 | 1.243 GB | 1.214 GB | 1.243 GB | 1.214 GB | 6h 0m | 3m 8s | 2m 22s |
| 0 | 2021-06-01T19:07:37+00:00 | 2021-06-01T19:08:11+00:00 | 2021-06-01T19:10:46+00:00 | 52.375 MB | 53.705 MB | 6.944 kB | 6.730 kB | 5.684 MB | 53.711 MB | 73757339 | cleanGFF | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/quay.io-biocontainers-agat-0.1.0--pl526r35_0.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/56/a8f59893041a62d983481bcb20c503 |
2 | blast | - | COMPLETED | fc/18fdb6 | 8 | 137.2 | 24.000 GB | 10.8 | 213.256 GB | 109.102 GB | 213.256 GB | 109.115 GB | 6h 0m | 3h 15m | 3h 15m |
| 0 | 2021-06-01T19:07:38+00:00 | 2021-06-01T19:08:11+00:00 | 2021-06-01T22:23:37+00:00 | 2.574 MB | 100.238 MB | 5.262 kB | 26.766 kB | 66.030 GB | 144.840 MB | 73757341 | blast (1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/ncbi-blast-2.10.1.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/fc/18fdb6f2f68e541b1f9cff2a96d70d |
3 | blast | - | COMPLETED | 8e/40c1cb | 8 | 180.3 | 24.000 GB | 10.8 | 186.544 GB | 109.109 GB | 213.254 GB | 109.111 GB | 6h 0m | 3h 18m | 3h 16m |
| 0 | 2021-06-01T19:07:37+00:00 | 2021-06-01T19:08:11+00:00 | 2021-06-01T22:25:42+00:00 | 3.061 MB | 95.805 MB | 8.313 kB | 25.090 kB | 45.818 GB | 139.941 MB | 73757340 | blast (2) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/ncbi-blast-2.10.1.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/8e/40c1cb842ce0e3698dedab664acdb4 |
4 | kofamscan | - | COMPLETED | 50/164a4d | 8 | 5.0 | 24.000 GB | 0.0 | 272.434 MB | 75.563 MB | 386.398 MB | 75.563 MB | 2d 0h | 3h 20m | 3h 19m |
| 0 | 2021-06-01T19:07:38+00:00 | 2021-06-01T19:08:11+00:00 | 2021-06-01T22:28:22+00:00 | 6.048 GB | 2.044 GB | 841.224 kB | 614.963 kB | 2.275 GB | 3.137 GB | 73757343 | kofamscan (1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/quay.io-biocontainers-kofamscan-1.2.0--0.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/50/164a4db343349cd187ea81bb3f5efa |
5 | kofamscan | - | COMPLETED | 4f/7a94b5 | 8 | 4.9 | 24.000 GB | 0.0 | 276.316 MB | 78.633 MB | 341.402 MB | 79.082 MB | 2d 0h | 3h 20m | 3h 19m |
| 0 | 2021-06-01T19:07:38+00:00 | 2021-06-01T19:08:11+00:00 | 2021-06-01T22:28:22+00:00 | 6.063 GB | 1.976 GB | 841.224 kB | 597.042 kB | 3.468 GB | 3.037 GB | 73757342 | kofamscan (2) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/quay.io-biocontainers-kofamscan-1.2.0--0.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/4f/7a94b5b548a5931e5c1068864b8853 |
6 | ipscn | - | COMPLETED | 1b/a32c05 | 8 | 54.6 | 24.000 GB | 3.2 | 13.143 GB | 4.020 GB | 18.841 GB | 4.163 GB | 2d 0h | 23m 33s | 22m 28s |
| 0 | 2021-06-01T19:07:38+00:00 | 2021-06-01T19:08:11+00:00 | 2021-06-01T19:31:11+00:00 | 58.589 GB | 111.376 MB | 7.506 MB | 17.893 kB | 10.344 GB | 117.828 MB | 73757348 | ipscn (1) | - | /software/bi/biocore_tools/git/singularity/iprscan/iprscan-5.48-83.0.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/1b/a32c057950796fe1068e365789e2d2 |
7 | ipscn | - | COMPLETED | 33/3433a4 | 8 | 106.5 | 24.000 GB | 3.2 | 13.273 GB | 4.032 GB | 18.918 GB | 4.063 GB | 2d 0h | 9m 28s | 8m 8s |
| 0 | 2021-06-01T19:07:38+00:00 | 2021-06-01T19:08:11+00:00 | 2021-06-01T19:17:06+00:00 | 50.634 GB | 112.105 MB | 6.515 MB | 19.331 kB | 15.538 GB | 113.773 MB | 73757345 | ipscn (2) | - | /software/bi/biocore_tools/git/singularity/iprscan/iprscan-5.48-83.0.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/33/3433a44109cdac446043b4e9e66ec1 |
8 | cdSearchHit | - | COMPLETED | ff/0fae5d | 1 | 28.8 | 8.000 GB | 0.0 | 0 | 0 | 0 | 0 | 6h 0m | 33.5s | 0.0s |
| 0 | 2021-06-01T19:07:38+00:00 | 2021-06-01T19:08:11+00:00 | 2021-06-01T19:08:11+00:00 | 43.806 kB | 222 B | 122 B | 12 B | 406.000 kB | 0 | 73757344 | cdSearchHit (1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/ff/0fae5d2b74977dc1c0f20b0673c911 |
9 | cdSearchFeat | - | COMPLETED | a6/d56050 | 1 | 36.8 | 8.000 GB | 0.0 | 0 | 0 | 0 | 0 | 6h 0m | 33.4s | 0.0s |
| 0 | 2021-06-01T19:07:38+00:00 | 2021-06-01T19:08:11+00:00 | 2021-06-01T19:08:11+00:00 | 43.808 kB | 222 B | 122 B | 12 B | 406.000 kB | 0 | 73757347 | cdSearchFeat (1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/a6/d56050515ca56e0875f49a06c86424 |
10 | signalP | - | COMPLETED | ed/55b390 | 4 | 191.7 | 24.000 GB | 0.0 | 40.465 MB | 5.332 MB | 40.465 MB | 5.332 MB | 6h 0m | 33.4s | 0.8s |
| 0 | 2021-06-01T19:07:38+00:00 | 2021-06-01T19:08:11+00:00 | 2021-06-01T19:08:11+00:00 | 10.568 MB | 448.049 kB | 10.397 kB | 142 B | 4.365 MB | 160.000 kB | 73757346 | signalP (1) | - | /software/bi/biocore_tools/git/singularity/sigtarp.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/ed/55b390ed0e06b27827f7f378ad9035 |
11 | signalP | - | COMPLETED | fa/9b9e68 | 4 | 200.5 | 24.000 GB | 0.0 | 40.594 MB | 5.414 MB | 40.594 MB | 5.414 MB | 6h 0m | 1m 38s | 0.8s |
| 0 | 2021-06-01T19:07:38+00:00 | 2021-06-01T19:09:16+00:00 | 2021-06-01T19:09:16+00:00 | 10.582 MB | 453.476 kB | 10.402 kB | 147 B | 4.312 MB | 160.000 kB | 73757349 | signalP (2) | - | /software/bi/biocore_tools/git/singularity/sigtarp.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/fa/9b9e683c46095a078faa882830ed61 |
12 | cdSearchHit | - | COMPLETED | 91/8a3e43 | 1 | 13.9 | 8.000 GB | 0.0 | 0 | 0 | 0 | 0 | 6h 0m | 35.1s | 0.0s |
| 0 | 2021-06-01T19:08:11+00:00 | 2021-06-01T19:08:46+00:00 | 2021-06-01T19:08:46+00:00 | 43.807 kB | 222 B | 122 B | 12 B | 406.000 kB | 0 | 73757363 | cdSearchHit (2) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/91/8a3e43907989fa0c5f6c84f0660ab0 |
13 | targetP | - | COMPLETED | 53/0df59a | 4 | 89.0 | 24.000 GB | 0.0 | 21.695 MB | 2.094 MB | 21.695 MB | 2.094 MB | 6h 0m | 1m 38s | 0.7s |
| 0 | 2021-06-01T19:07:38+00:00 | 2021-06-01T19:09:16+00:00 | 2021-06-01T19:09:16+00:00 | 5.196 MB | 2.840 MB | 4.140 kB | 906 B | 2.363 MB | 1.203 MB | 73757351 | targetP (1) | - | /software/bi/biocore_tools/git/singularity/sigtarp.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/53/0df59ae232b31b550f82be50f19275 |
14 | targetP | - | COMPLETED | 55/0e5526 | 4 | 96.4 | 24.000 GB | 0.0 | 21.695 MB | 2.090 MB | 21.695 MB | 2.090 MB | 6h 0m | 1m 38s | 0.5s |
| 0 | 2021-06-01T19:07:38+00:00 | 2021-06-01T19:09:16+00:00 | 2021-06-01T19:09:16+00:00 | 4.167 MB | 2.401 MB | 3.079 kB | 918 B | 1.972 MB | 988.000 kB | 73757350 | targetP (2) | - | /software/bi/biocore_tools/git/singularity/sigtarp.sif | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/55/0e55261f0e006c2a22e5dc61e35316 |
15 | cdSearchFeat | - | COMPLETED | 8d/7f6de1 | 1 | 18.0 | 8.000 GB | 0.0 | 0 | 0 | 0 | 0 | 6h 0m | 35.0s | 0.0s |
| 0 | 2021-06-01T19:08:11+00:00 | 2021-06-01T19:08:46+00:00 | 2021-06-01T19:08:46+00:00 | 43.808 kB | 222 B | 122 B | 12 B | 406.000 kB | 0 | 73757364 | cdSearchFeat (2) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/8d/7f6de10eb32c03d49a76dedeef573c |
16 | initDB | - | COMPLETED | d6/0839b1 | 4 | 5.6 | 24.000 GB | 0.0 | 66.855 MB | 37.754 MB | 66.941 MB | 37.754 MB | 6h 0m | 7m 24s | 6m 48s |
| 0 | 2021-06-01T19:10:47+00:00 | 2021-06-01T19:11:21+00:00 | 2021-06-01T19:18:11+00:00 | 55.765 MB | 687.841 kB | 7.502 kB | 142 B | 6.678 MB | 12.000 kB | 73757429 | initDB (1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/d6/0839b19c8fe24f0628149e60608e8f |
17 | statsGFF | - | COMPLETED | 07/23266e | 1 | 99.3 | 24.000 GB | 0.1 | 1.223 GB | 1.195 GB | 1.226 GB | 1.198 GB | 6h 0m | 2m 44s | 2m 16s |
| 0 | 2021-06-01T19:10:46+00:00 | 2021-06-01T19:11:21+00:00 | 2021-06-01T19:13:31+00:00 | 58.525 MB | 11.533 kB | 7.693 kB | 17 B | 5.680 MB | 16.000 kB | 73757428 | statsGFF | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/quay.io-biocontainers-agat-0.1.0--pl526r35_0.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/07/23266e620e82686be0ab369886bb4c |
18 | blast_annotator | - | COMPLETED | 56/2caed9 | 1 | 21.3 | 8.000 GB | 0.0 | 92.832 MB | 51.469 MB | 92.863 MB | 51.469 MB | 6h 0m | 1m 4s | 14.8s |
| 0 | 2021-06-01T22:23:38+00:00 | 2021-06-01T22:24:12+00:00 | 2021-06-01T22:24:42+00:00 | 13.622 MB | 8.318 kB | 2.071 kB | 22 B | 8.143 MB | 4.000 kB | 73762026 | blast_annotator (1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/56/2caed9bb454b46abb5c7bb3bc69780 |
19 | blastDef | blastXmlinput.1 | COMPLETED | c9/db21c9 | 4 | 67.8 | 24.000 GB | 0.0 | 78.777 MB | 36.594 MB | 78.809 MB | 36.594 MB | 6h 0m | 1m 9s | 5.4s |
| 0 | 2021-06-01T22:23:38+00:00 | 2021-06-01T22:24:12+00:00 | 2021-06-01T22:24:47+00:00 | 12.600 MB | 1.610 kB | 1.856 kB | 30 B | 17.060 MB | 8.000 kB | 73762025 | blastDef (blastXmlinput.1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/c9/db21c934cc072f11db3ab0a9bd10f4 |
20 | blast_annotator | - | COMPLETED | 30/cc5445 | 1 | 75.6 | 8.000 GB | 0.0 | 98.641 MB | 56.496 MB | 98.672 MB | 56.496 MB | 6h 0m | 34.9s | 2.1s |
| 0 | 2021-06-01T22:25:42+00:00 | 2021-06-01T22:26:17+00:00 | 2021-06-01T22:26:17+00:00 | 10.081 MB | 6.569 kB | 1.621 kB | 20 B | 8.143 MB | 4.000 kB | 73762050 | blast_annotator (2) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/30/cc5445a39ce44c80051f1f973f3471 |
21 | blastDef | blastXmlinput.1 | COMPLETED | 82/cd410c | 4 | 99.1 | 24.000 GB | 0.0 | 78.551 MB | 36.418 MB | 78.582 MB | 36.418 MB | 6h 0m | 34.9s | 1.9s |
| 0 | 2021-06-01T22:25:42+00:00 | 2021-06-01T22:26:17+00:00 | 2021-06-01T22:26:17+00:00 | 9.065 MB | 565 B | 1.414 kB | 13 B | 6.263 MB | 4.000 kB | 73762051 | blastDef (blastXmlinput.1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/82/cd410c56d11ff57a87926cd8bb26da |
22 | definition_upload | - | COMPLETED | 10/4a694d | 4 | 45.0 | 24.000 GB | 0.0 | 3.637 MB | 1.527 MB | 3.668 MB | 1.527 MB | 6h 0m | 34.9s | 0.9s |
| 0 | 2021-06-01T22:26:17+00:00 | 2021-06-01T22:26:52+00:00 | 2021-06-01T22:26:52+00:00 | 1.414 MB | 3.597 kB | 473 B | 51 B | 5.661 MB | 8.000 kB | 73762059 | definition_upload (1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/10/4a694d2ca3b19bc81334291e367b01 |
23 | signalP_upload | - | COMPLETED | 2c/6d4e1d | 4 | 88.7 | 24.000 GB | 0.0 | 11.699 MB | 4.590 MB | 11.730 MB | 4.590 MB | 6h 0m | 39.8s | 0.4s |
| 0 | 2021-06-01T22:26:52+00:00 | 2021-06-01T22:26:57+00:00 | 2021-06-01T22:27:32+00:00 | 1.208 MB | 5.168 kB | 419 B | 51 B | 5.479 MB | 8.000 kB | 73762069 | signalP_upload (1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/2c/6d4e1d4f4563303b07fbdcd0fc8e61 |
24 | targetP_upload | - | COMPLETED | e2/3eb9e7 | 4 | 76.0 | 24.000 GB | 0.0 | 3.637 MB | 1.523 MB | 3.668 MB | 1.523 MB | 6h 0m | 34.9s | 0.5s |
| 0 | 2021-06-01T22:27:32+00:00 | 2021-06-01T22:28:07+00:00 | 2021-06-01T22:28:07+00:00 | 1.208 MB | 5.168 kB | 419 B | 51 B | 5.487 MB | 8.000 kB | 73762087 | targetP_upload (1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/e2/3eb9e72d53e9717a0b3141fa9ce605 |
25 | interpro_upload | - | COMPLETED | dc/9d9e8d | 4 | 31.5 | 24.000 GB | 0.0 | 39.445 MB | 23.832 MB | 39.492 MB | 23.832 MB | 6h 0m | 34.8s | 1.7s |
| 0 | 2021-06-01T22:28:07+00:00 | 2021-06-01T22:28:42+00:00 | 2021-06-01T22:28:42+00:00 | 2.420 MB | 518.484 kB | 540 B | 54 B | 6.161 MB | 520.000 kB | 73762106 | interpro_upload (1) | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/singularity/toniher-fa-nf-latest.img | - | 1 | - | /nfs/users2/bi/thermoso/projects/Adorsata/FA-nf/work/dc/9d9e8d3932ee1566ef0494b38e4683 |