###############################################################################
## Gencode captured targets  (static)
###############################################################################

track input
superTrack on
shortLabel Input (targets)
longLabel Input (Captured regions) 
priority 10
visibility dense
html ../Input.html




### Dynamic part starts here




  track Cap1_targets
  bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hs_Cap1_targets.bb
  shortLabel Cap1 targets
  longLabel GENCODE Capture Cap1, transcript targets
  type bigBed 12
  itemRgb on
  searchIndex name
  parent input
  visibility dense



  track Cap1_probes
  bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hs_Cap1_probes.bb
  shortLabel Cap1 probes
  longLabel GENCODE Capture Cap1, capture probes
  type bigBed 12
  parent input
  visibility dense
  color 153,153,153


###############################################################################
## FANTOM5 true TSSs
###############################################################################

track fantom5TrueTss
superTrack on
#compositeTrack on
shortLabel FANTOM5 true TSSs
html ../fantom5TrueTss
longLabel FANTOM5 true TSS peaks
priority 10
visibility dense

  track FANTOM5CAGEtrueTSSs
  bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hs.TSS.strict_hg38.color.bb
  shortLabel FANTOM5 CAGE true TSSs
  longLabel FANTOM5 CAGE true TSSs
  type bigBed 9
  parent fantom5TrueTss
  visibility dense
  itemRgb on


###############################################################################
## Output, read alignments (BAMs+bigwigs) etc
###############################################################################

track output
superTrack on
#compositeTrack on
shortLabel Output
html ../Output
longLabel Capture output (read alignments, read density, merged transcripts, polyA sites)
priority 10
visibility dense

	track bams
	compositeTrack on
	subGroup1 filter Views primAlign=All_PacBio_reads polyAreads=PolyA_PacBio_reads bothAdapters=PacBio_reads_with_both_library_adapters hiSeq=Capture_HiSeq_reads
	subGroup2 sample Samples all=all Brain=Brain Heart=Heart HeLa=HeLa K562=K562 Liver=Liver Testes=Testes Undeter=Undeter
	dimensions dimX=sample dimY=filter
	parent output
	shortLabel BAMs
	longLabel BAM files (PacBio + HiSeq) - mapped with STAR (not stranded)
	type bam
	visibility hide
	bamColorMode gray
	dragAndDrop subTracks
	#allButtonPair on


		track Cap1_hsAll_all_bothAdapters
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_all_bothAdapters.bam
		shortLabel Cap1 hsAll all bothAdapters
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, filter: bothAdapters
		type bam
		view bothAdapters
		viewUi on
		subGroups filter=bothAdapters sample=all
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Brain_bothAdapters
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Brain_bothAdapters.bam
		shortLabel Cap1 hsAll Brain bothAdapters
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, filter: bothAdapters
		type bam
		view bothAdapters
		viewUi on
		subGroups filter=bothAdapters sample=Brain
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Brain_hiSeq
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Brain_hiSeq.bam
		shortLabel Cap1 hsAll Brain hiSeq
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, filter: hiSeq
		type bam
		view hiSeq
		viewUi on
		subGroups filter=hiSeq sample=Brain
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Brain_primAlign
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Brain_primAlign.bam
		shortLabel Cap1 hsAll Brain primAlign
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, filter: primAlign
		type bam
		view primAlign
		viewUi on
		subGroups filter=primAlign sample=Brain
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Heart_bothAdapters
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Heart_bothAdapters.bam
		shortLabel Cap1 hsAll Heart bothAdapters
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, filter: bothAdapters
		type bam
		view bothAdapters
		viewUi on
		subGroups filter=bothAdapters sample=Heart
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Heart_hiSeq
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Heart_hiSeq.bam
		shortLabel Cap1 hsAll Heart hiSeq
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, filter: hiSeq
		type bam
		view hiSeq
		viewUi on
		subGroups filter=hiSeq sample=Heart
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Heart_primAlign
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Heart_primAlign.bam
		shortLabel Cap1 hsAll Heart primAlign
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, filter: primAlign
		type bam
		view primAlign
		viewUi on
		subGroups filter=primAlign sample=Heart
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_HeLa_bothAdapters
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_HeLa_bothAdapters.bam
		shortLabel Cap1 hsAll HeLa bothAdapters
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, filter: bothAdapters
		type bam
		view bothAdapters
		viewUi on
		subGroups filter=bothAdapters sample=HeLa
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_HeLa_hiSeq
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_HeLa_hiSeq.bam
		shortLabel Cap1 hsAll HeLa hiSeq
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, filter: hiSeq
		type bam
		view hiSeq
		viewUi on
		subGroups filter=hiSeq sample=HeLa
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_HeLa_primAlign
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_HeLa_primAlign.bam
		shortLabel Cap1 hsAll HeLa primAlign
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, filter: primAlign
		type bam
		view primAlign
		viewUi on
		subGroups filter=primAlign sample=HeLa
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_K562_bothAdapters
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_K562_bothAdapters.bam
		shortLabel Cap1 hsAll K562 bothAdapters
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, filter: bothAdapters
		type bam
		view bothAdapters
		viewUi on
		subGroups filter=bothAdapters sample=K562
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_K562_hiSeq
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_K562_hiSeq.bam
		shortLabel Cap1 hsAll K562 hiSeq
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, filter: hiSeq
		type bam
		view hiSeq
		viewUi on
		subGroups filter=hiSeq sample=K562
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_K562_primAlign
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_K562_primAlign.bam
		shortLabel Cap1 hsAll K562 primAlign
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, filter: primAlign
		type bam
		view primAlign
		viewUi on
		subGroups filter=primAlign sample=K562
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Liver_bothAdapters
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Liver_bothAdapters.bam
		shortLabel Cap1 hsAll Liver bothAdapters
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, filter: bothAdapters
		type bam
		view bothAdapters
		viewUi on
		subGroups filter=bothAdapters sample=Liver
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Liver_hiSeq
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Liver_hiSeq.bam
		shortLabel Cap1 hsAll Liver hiSeq
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, filter: hiSeq
		type bam
		view hiSeq
		viewUi on
		subGroups filter=hiSeq sample=Liver
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Liver_primAlign
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Liver_primAlign.bam
		shortLabel Cap1 hsAll Liver primAlign
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, filter: primAlign
		type bam
		view primAlign
		viewUi on
		subGroups filter=primAlign sample=Liver
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Testes_bothAdapters
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Testes_bothAdapters.bam
		shortLabel Cap1 hsAll Testes bothAdapters
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, filter: bothAdapters
		type bam
		view bothAdapters
		viewUi on
		subGroups filter=bothAdapters sample=Testes
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Testes_hiSeq
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Testes_hiSeq.bam
		shortLabel Cap1 hsAll Testes hiSeq
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, filter: hiSeq
		type bam
		view hiSeq
		viewUi on
		subGroups filter=hiSeq sample=Testes
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Testes_primAlign
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Testes_primAlign.bam
		shortLabel Cap1 hsAll Testes primAlign
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, filter: primAlign
		type bam
		view primAlign
		viewUi on
		subGroups filter=primAlign sample=Testes
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Undeter_bothAdapters
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Undeter_bothAdapters.bam
		shortLabel Cap1 hsAll Undeter bothAdapters
		longLabel GENCODE Capture Cap1, hsAll, tissue: Undeter, filter: bothAdapters
		type bam
		view bothAdapters
		viewUi on
		subGroups filter=bothAdapters sample=Undeter
		# visibility dense
		#   bamColorMode gray


		track Cap1_hsAll_Undeter_primAlign
		parent bams
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Undeter_primAlign.bam
		shortLabel Cap1 hsAll Undeter primAlign
		longLabel GENCODE Capture Cap1, hsAll, tissue: Undeter, filter: primAlign
		type bam
		view primAlign
		viewUi on
		subGroups filter=primAlign sample=Undeter
		# visibility dense
		#   bamColorMode gray


	track readSignal
	compositeTrack on
	subGroup1 strand Views plus=plus_strand minus=minus_strand
	subGroup2 sample Samples all=all Brain=Brain Heart=Heart HeLa=HeLa K562=K562 Liver=Liver Testes=Testes Undeter=Undeter
	dimensions dimX=sample dimY=strand
	parent output
	shortLabel PacBio Signal
	longLabel PacBio read signal files - stranded genome coverage for reads with 100% canonical SJs and/or polyA (BigWigs)
	type bigWig
	visibility full
	dragAndDrop subTracks
	#allButtonPair on


		track Cap1_hsAll_all_minus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_all_stranded.exons.all.gtag.-.bw
		shortLabel Cap1 hsAll all minus
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, minus strand
		type bigWig
		viewUi on
		subGroups strand=minus sample=all
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_all_plus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_all_stranded.exons.all.gtag.+.bw
		shortLabel Cap1 hsAll all plus
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, plus strand
		type bigWig
		viewUi on
		subGroups strand=plus sample=all
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Brain_minus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Brain_stranded.exons.all.gtag.-.bw
		shortLabel Cap1 hsAll Brain minus
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, minus strand
		type bigWig
		viewUi on
		subGroups strand=minus sample=Brain
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Brain_plus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Brain_stranded.exons.all.gtag.+.bw
		shortLabel Cap1 hsAll Brain plus
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, plus strand
		type bigWig
		viewUi on
		subGroups strand=plus sample=Brain
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Heart_minus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Heart_stranded.exons.all.gtag.-.bw
		shortLabel Cap1 hsAll Heart minus
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, minus strand
		type bigWig
		viewUi on
		subGroups strand=minus sample=Heart
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Heart_plus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Heart_stranded.exons.all.gtag.+.bw
		shortLabel Cap1 hsAll Heart plus
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, plus strand
		type bigWig
		viewUi on
		subGroups strand=plus sample=Heart
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_HeLa_minus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_HeLa_stranded.exons.all.gtag.-.bw
		shortLabel Cap1 hsAll HeLa minus
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, minus strand
		type bigWig
		viewUi on
		subGroups strand=minus sample=HeLa
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_HeLa_plus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_HeLa_stranded.exons.all.gtag.+.bw
		shortLabel Cap1 hsAll HeLa plus
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, plus strand
		type bigWig
		viewUi on
		subGroups strand=plus sample=HeLa
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_K562_minus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_K562_stranded.exons.all.gtag.-.bw
		shortLabel Cap1 hsAll K562 minus
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, minus strand
		type bigWig
		viewUi on
		subGroups strand=minus sample=K562
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_K562_plus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_K562_stranded.exons.all.gtag.+.bw
		shortLabel Cap1 hsAll K562 plus
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, plus strand
		type bigWig
		viewUi on
		subGroups strand=plus sample=K562
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Liver_minus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Liver_stranded.exons.all.gtag.-.bw
		shortLabel Cap1 hsAll Liver minus
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, minus strand
		type bigWig
		viewUi on
		subGroups strand=minus sample=Liver
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Liver_plus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Liver_stranded.exons.all.gtag.+.bw
		shortLabel Cap1 hsAll Liver plus
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, plus strand
		type bigWig
		viewUi on
		subGroups strand=plus sample=Liver
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Testes_minus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Testes_stranded.exons.all.gtag.-.bw
		shortLabel Cap1 hsAll Testes minus
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, minus strand
		type bigWig
		viewUi on
		subGroups strand=minus sample=Testes
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Testes_plus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Testes_stranded.exons.all.gtag.+.bw
		shortLabel Cap1 hsAll Testes plus
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, plus strand
		type bigWig
		viewUi on
		subGroups strand=plus sample=Testes
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Undeter_minus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Undeter_stranded.exons.all.gtag.-.bw
		shortLabel Cap1 hsAll Undeter minus
		longLabel GENCODE Capture Cap1, hsAll, tissue: Undeter, minus strand
		type bigWig
		viewUi on
		subGroups strand=minus sample=Undeter
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Undeter_plus
		parent readSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Undeter_stranded.exons.all.gtag.+.bw
		shortLabel Cap1 hsAll Undeter plus
		longLabel GENCODE Capture Cap1, hsAll, tissue: Undeter, plus strand
		type bigWig
		viewUi on
		subGroups strand=plus sample=Undeter
		alwaysZero on
		color 0,76,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


	track hiSeqReadSignal
	compositeTrack on
	subGroup1 strand Views unstranded=unstranded
	subGroup2 sample Samples all=all Brain=Brain Heart=Heart HeLa=HeLa K562=K562 Liver=Liver Testes=Testes Undeter=Undeter
	dimensions dimX=sample dimY=strand
	parent output
	shortLabel HiSeq Signal
	longLabel HiSeq read signal files (BigWigs)
	type bigWig
	visibility dense
	dragAndDrop subTracks
	#allButtonPair on


		track Cap1_hsAll_Brain_hsAll_Cap1_Brain_hiSeqbigWig
		parent hiSeqReadSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Brain_hiSeq.bw
		shortLabel Cap1 hsAll Brain hsAll_Cap1_Brain_hiSeq bigWig
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, hsAll_Cap1_Brain_hiSeq unstranded
		type bigWig
		viewUi on
		subGroups strand=unstranded sample=Brain
		alwaysZero on
		color 76,0,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Heart_hsAll_Cap1_Heart_hiSeqbigWig
		parent hiSeqReadSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Heart_hiSeq.bw
		shortLabel Cap1 hsAll Heart hsAll_Cap1_Heart_hiSeq bigWig
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, hsAll_Cap1_Heart_hiSeq unstranded
		type bigWig
		viewUi on
		subGroups strand=unstranded sample=Heart
		alwaysZero on
		color 76,0,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_HeLa_hsAll_Cap1_HeLa_hiSeqbigWig
		parent hiSeqReadSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_HeLa_hiSeq.bw
		shortLabel Cap1 hsAll HeLa hsAll_Cap1_HeLa_hiSeq bigWig
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, hsAll_Cap1_HeLa_hiSeq unstranded
		type bigWig
		viewUi on
		subGroups strand=unstranded sample=HeLa
		alwaysZero on
		color 76,0,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_K562_hsAll_Cap1_K562_hiSeqbigWig
		parent hiSeqReadSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_K562_hiSeq.bw
		shortLabel Cap1 hsAll K562 hsAll_Cap1_K562_hiSeq bigWig
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, hsAll_Cap1_K562_hiSeq unstranded
		type bigWig
		viewUi on
		subGroups strand=unstranded sample=K562
		alwaysZero on
		color 76,0,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Liver_hsAll_Cap1_Liver_hiSeqbigWig
		parent hiSeqReadSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Liver_hiSeq.bw
		shortLabel Cap1 hsAll Liver hsAll_Cap1_Liver_hiSeq bigWig
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, hsAll_Cap1_Liver_hiSeq unstranded
		type bigWig
		viewUi on
		subGroups strand=unstranded sample=Liver
		alwaysZero on
		color 76,0,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


		track Cap1_hsAll_Testes_hsAll_Cap1_Testes_hiSeqbigWig
		parent hiSeqReadSignal
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Testes_hiSeq.bw
		shortLabel Cap1 hsAll Testes hsAll_Cap1_Testes_hiSeq bigWig
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, hsAll_Cap1_Testes_hiSeq unstranded
		type bigWig
		viewUi on
		subGroups strand=unstranded sample=Testes
		alwaysZero on
		color 76,0,153
		autoScale on
		maxHeightPixels 128:28:11
		#visibility full


	track stringTie
	compositeTrack on
	subGroup1 filter Views all=All_transcripts
	subGroup2 sample Samples all=all Brain=Brain Heart=Heart HeLa=HeLa K562=K562 Liver=Liver Testes=Testes Undeter=Undeter
	dimensions dimX=sample dimY=filter
	parent output
	itemRgb on
	shortLabel StringTie transcripts
	longLabel Captured HiSeq-based StringTie transcript models
	type bigBed 12
	visibility pack
	dragAndDrop subTracks


		track Cap1_hsAll_all_StringTie
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_hiSeqstringTie.bb
		shortLabel Cap1 hsAll all StringTie
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, HiSeq-based StringTie transcript models
		type bigBed 12
		searchIndex name
		parent stringTie
		viewUi on
		subGroups filter=StringTie sample=all
		visibility full


		track Cap1_hsAll_Brain_StringTie
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_hiSeqstringTie.bb
		shortLabel Cap1 hsAll Brain StringTie
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, HiSeq-based StringTie transcript models
		type bigBed 12
		searchIndex name
		parent stringTie
		viewUi on
		subGroups filter=StringTie sample=Brain
		visibility full


		track Cap1_hsAll_Heart_StringTie
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_hiSeqstringTie.bb
		shortLabel Cap1 hsAll Heart StringTie
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, HiSeq-based StringTie transcript models
		type bigBed 12
		searchIndex name
		parent stringTie
		viewUi on
		subGroups filter=StringTie sample=Heart
		visibility full


		track Cap1_hsAll_HeLa_StringTie
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_hiSeqstringTie.bb
		shortLabel Cap1 hsAll HeLa StringTie
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, HiSeq-based StringTie transcript models
		type bigBed 12
		searchIndex name
		parent stringTie
		viewUi on
		subGroups filter=StringTie sample=HeLa
		visibility full


		track Cap1_hsAll_K562_StringTie
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_hiSeqstringTie.bb
		shortLabel Cap1 hsAll K562 StringTie
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, HiSeq-based StringTie transcript models
		type bigBed 12
		searchIndex name
		parent stringTie
		viewUi on
		subGroups filter=StringTie sample=K562
		visibility full


		track Cap1_hsAll_Liver_StringTie
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_hiSeqstringTie.bb
		shortLabel Cap1 hsAll Liver StringTie
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, HiSeq-based StringTie transcript models
		type bigBed 12
		searchIndex name
		parent stringTie
		viewUi on
		subGroups filter=StringTie sample=Liver
		visibility full


		track Cap1_hsAll_Testes_StringTie
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_hiSeqstringTie.bb
		shortLabel Cap1 hsAll Testes StringTie
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, HiSeq-based StringTie transcript models
		type bigBed 12
		searchIndex name
		parent stringTie
		viewUi on
		subGroups filter=StringTie sample=Testes
		visibility full


	track polyASitesSignal
	compositeTrack on
	subGroup1 strand Views plus=plus_strand minus=minus_strand
	subGroup2 sample Samples all=all Brain=Brain Heart=Heart HeLa=HeLa K562=K562 Liver=Liver Testes=Testes Undeter=Undeter
	dimensions dimX=sample dimY=strand
	parent output
	shortLabel PolyA sites density
	longLabel PolyA sites density
	type bigWig
	visibility full
	dragAndDrop subTracks
	#allButtonPair on


		track Cap1_polyA_hsAll_Brain_minus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Brain_polyAsitesNoErcc.-.bw
		shortLabel Cap1 hsAll Brain polyA, minus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, polyA minus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=minus sample=Brain
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


		track Cap1_polyA_hsAll_Brain_plus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Brain_polyAsitesNoErcc.+.bw
		shortLabel Cap1 hsAll Brain polyA, plus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, polyA plus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=plus sample=Brain
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


		track Cap1_polyA_hsAll_Heart_minus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Heart_polyAsitesNoErcc.-.bw
		shortLabel Cap1 hsAll Heart polyA, minus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, polyA minus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=minus sample=Heart
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


		track Cap1_polyA_hsAll_Heart_plus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Heart_polyAsitesNoErcc.+.bw
		shortLabel Cap1 hsAll Heart polyA, plus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, polyA plus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=plus sample=Heart
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


		track Cap1_polyA_hsAll_HeLa_minus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_HeLa_polyAsitesNoErcc.-.bw
		shortLabel Cap1 hsAll HeLa polyA, minus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, polyA minus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=minus sample=HeLa
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


		track Cap1_polyA_hsAll_HeLa_plus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_HeLa_polyAsitesNoErcc.+.bw
		shortLabel Cap1 hsAll HeLa polyA, plus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, polyA plus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=plus sample=HeLa
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


		track Cap1_polyA_hsAll_K562_minus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_K562_polyAsitesNoErcc.-.bw
		shortLabel Cap1 hsAll K562 polyA, minus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, polyA minus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=minus sample=K562
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


		track Cap1_polyA_hsAll_K562_plus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_K562_polyAsitesNoErcc.+.bw
		shortLabel Cap1 hsAll K562 polyA, plus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, polyA plus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=plus sample=K562
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


		track Cap1_polyA_hsAll_Liver_minus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Liver_polyAsitesNoErcc.-.bw
		shortLabel Cap1 hsAll Liver polyA, minus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, polyA minus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=minus sample=Liver
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


		track Cap1_polyA_hsAll_Liver_plus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Liver_polyAsitesNoErcc.+.bw
		shortLabel Cap1 hsAll Liver polyA, plus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, polyA plus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=plus sample=Liver
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


		track Cap1_polyA_hsAll_Testes_minus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Testes_polyAsitesNoErcc.-.bw
		shortLabel Cap1 hsAll Testes polyA, minus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, polyA minus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=minus sample=Testes
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


		track Cap1_polyA_hsAll_Testes_plus
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/hsAll_Cap1_Testes_polyAsitesNoErcc.+.bw
		shortLabel Cap1 hsAll Testes polyA, plus strand
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, polyA plus strand
		type bigWig
		parent polyASitesSignal
		viewUi on
		subGroups strand=plus sample=Testes
		alwaysZero on
		color 204,0,0
		autoScale on
		maxHeightPixels 128:28:11
		visibility full


	track mergedanchor
	compositeTrack on
	subGroup1 filter Views all=All_transcripts cageSupported=CAGE-supported polyASupported=polyA-supported cagepolyASupported=CAGE+polyA-supported allHiSS=All_HiSeq-supported_transcripts cageSupportedHiSS=HiSeq-supported+CAGE-supported polyASupportedHiSS=HiSeq-supported+polyA-supported cagepolyASupportedHiSS=HiSeq-supported+CAGE+polyA-supported
	subGroup2 sample Samples all=all Brain=Brain Heart=Heart HeLa=HeLa K562=K562 Liver=Liver Testes=Testes Undeter=Undeter
	dimensions dimX=sample dimY=filter
	parent output
	itemRgb on
	shortLabel Merged transcripts (anchored)
	longLabel Merged transcripts with 100% canonical SJs and/or polyA (anchored)
	html ../mergedanchor
	type bigBed 12
	visibility pack
	dragAndDrop subTracks
	#allButtonPair on


		track Cap1_hsAll_all_anchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll all all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, anchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=all sample=all
		visibility full


		track Cap1_hsAll_all_anchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll all cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, anchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupported sample=all
		visibility full


		track Cap1_hsAll_all_anchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll all cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, anchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupported sample=all
		visibility full


		track Cap1_hsAll_all_anchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll all polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, anchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupported sample=all
		visibility full


		track Cap1_hsAll_all_anchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.HiSS.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll all all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, anchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=allHiSS sample=all
		visibility full


		track Cap1_hsAll_all_anchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.HiSS.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll all cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, anchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=all
		visibility full


		track Cap1_hsAll_all_anchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.HiSS.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll all cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, anchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=all
		visibility full


		track Cap1_hsAll_all_anchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.HiSS.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll all polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, anchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=all
		visibility full


		track Cap1_hsAll_Brain_anchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll Brain all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, anchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=all sample=Brain
		visibility full


		track Cap1_hsAll_Brain_anchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Brain cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, anchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupported sample=Brain
		visibility full


		track Cap1_hsAll_Brain_anchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Brain cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, anchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupported sample=Brain
		visibility full


		track Cap1_hsAll_Brain_anchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Brain polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, anchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupported sample=Brain
		visibility full


		track Cap1_hsAll_Brain_anchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.HiSS.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll Brain all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, anchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=allHiSS sample=Brain
		visibility full


		track Cap1_hsAll_Brain_anchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.HiSS.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Brain cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, anchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=Brain
		visibility full


		track Cap1_hsAll_Brain_anchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.HiSS.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Brain cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, anchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=Brain
		visibility full


		track Cap1_hsAll_Brain_anchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.HiSS.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Brain polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, anchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=Brain
		visibility full


		track Cap1_hsAll_Heart_anchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll Heart all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, anchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=all sample=Heart
		visibility full


		track Cap1_hsAll_Heart_anchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Heart cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, anchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupported sample=Heart
		visibility full


		track Cap1_hsAll_Heart_anchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Heart cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, anchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupported sample=Heart
		visibility full


		track Cap1_hsAll_Heart_anchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Heart polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, anchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupported sample=Heart
		visibility full


		track Cap1_hsAll_Heart_anchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.HiSS.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll Heart all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, anchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=allHiSS sample=Heart
		visibility full


		track Cap1_hsAll_Heart_anchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.HiSS.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Heart cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, anchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=Heart
		visibility full


		track Cap1_hsAll_Heart_anchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.HiSS.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Heart cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, anchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=Heart
		visibility full


		track Cap1_hsAll_Heart_anchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.HiSS.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Heart polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, anchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=Heart
		visibility full


		track Cap1_hsAll_HeLa_anchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll HeLa all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, anchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=all sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_anchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll HeLa cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, anchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupported sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_anchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll HeLa cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, anchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupported sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_anchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll HeLa polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, anchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupported sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_anchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.HiSS.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll HeLa all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, anchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=allHiSS sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_anchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.HiSS.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll HeLa cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, anchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_anchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.HiSS.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll HeLa cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, anchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_anchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.HiSS.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll HeLa polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, anchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=HeLa
		visibility full


		track Cap1_hsAll_K562_anchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll K562 all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, anchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=all sample=K562
		visibility full


		track Cap1_hsAll_K562_anchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll K562 cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, anchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupported sample=K562
		visibility full


		track Cap1_hsAll_K562_anchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll K562 cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, anchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupported sample=K562
		visibility full


		track Cap1_hsAll_K562_anchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll K562 polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, anchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupported sample=K562
		visibility full


		track Cap1_hsAll_K562_anchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.HiSS.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll K562 all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, anchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=allHiSS sample=K562
		visibility full


		track Cap1_hsAll_K562_anchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.HiSS.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll K562 cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, anchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=K562
		visibility full


		track Cap1_hsAll_K562_anchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.HiSS.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll K562 cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, anchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=K562
		visibility full


		track Cap1_hsAll_K562_anchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.HiSS.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll K562 polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, anchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=K562
		visibility full


		track Cap1_hsAll_Liver_anchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll Liver all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, anchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=all sample=Liver
		visibility full


		track Cap1_hsAll_Liver_anchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Liver cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, anchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupported sample=Liver
		visibility full


		track Cap1_hsAll_Liver_anchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Liver cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, anchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupported sample=Liver
		visibility full


		track Cap1_hsAll_Liver_anchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Liver polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, anchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupported sample=Liver
		visibility full


		track Cap1_hsAll_Liver_anchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.HiSS.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll Liver all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, anchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=allHiSS sample=Liver
		visibility full


		track Cap1_hsAll_Liver_anchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.HiSS.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Liver cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, anchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=Liver
		visibility full


		track Cap1_hsAll_Liver_anchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.HiSS.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Liver cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, anchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=Liver
		visibility full


		track Cap1_hsAll_Liver_anchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.HiSS.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Liver polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, anchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=Liver
		visibility full


		track Cap1_hsAll_Testes_anchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll Testes all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, anchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=all sample=Testes
		visibility full


		track Cap1_hsAll_Testes_anchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Testes cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, anchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupported sample=Testes
		visibility full


		track Cap1_hsAll_Testes_anchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Testes cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, anchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupported sample=Testes
		visibility full


		track Cap1_hsAll_Testes_anchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Testes polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, anchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupported sample=Testes
		visibility full


		track Cap1_hsAll_Testes_anchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.HiSS.anchor.compmerge.all.bb
		shortLabel Cap1 hsAll Testes all anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, anchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=allHiSS sample=Testes
		visibility full


		track Cap1_hsAll_Testes_anchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.HiSS.anchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Testes cagepolyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, anchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=Testes
		visibility full


		track Cap1_hsAll_Testes_anchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.HiSS.anchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Testes cageSupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, anchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=Testes
		visibility full


		track Cap1_hsAll_Testes_anchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.HiSS.anchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Testes polyASupported anchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, anchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergedanchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=Testes
		visibility full


	track mergednoAnchor
	compositeTrack on
	subGroup1 filter Views all=All_transcripts cageSupported=CAGE-supported polyASupported=polyA-supported cagepolyASupported=CAGE+polyA-supported allHiSS=All_HiSeq-supported_transcripts cageSupportedHiSS=HiSeq-supported+CAGE-supported polyASupportedHiSS=HiSeq-supported+polyA-supported cagepolyASupportedHiSS=HiSeq-supported+CAGE+polyA-supported
	subGroup2 sample Samples all=all Brain=Brain Heart=Heart HeLa=HeLa K562=K562 Liver=Liver Testes=Testes Undeter=Undeter
	dimensions dimX=sample dimY=filter
	parent output
	itemRgb on
	shortLabel Merged transcripts (non anchored)
	longLabel Merged transcripts with 100% canonical SJs and/or polyA (non anchored)
	html ../mergednoAnchor
	type bigBed 12
	visibility pack
	dragAndDrop subTracks
	#allButtonPair on


		track Cap1_hsAll_all_noAnchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll all all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, noAnchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=allHiSS sample=all
		visibility full


		track Cap1_hsAll_all_noAnchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll all cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, noAnchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=all
		visibility full


		track Cap1_hsAll_all_noAnchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll all cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, noAnchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=all
		visibility full


		track Cap1_hsAll_all_noAnchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll all polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, noAnchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=all
		visibility full


		track Cap1_hsAll_all_noAnchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll all all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, noAnchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=all sample=all
		visibility full


		track Cap1_hsAll_all_noAnchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll all cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, noAnchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupported sample=all
		visibility full


		track Cap1_hsAll_all_noAnchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll all cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, noAnchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupported sample=all
		visibility full


		track Cap1_hsAll_all_noAnchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_all_stranded.exons.all.gtag.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll all polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: all, noAnchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupported sample=all
		visibility full


		track Cap1_hsAll_Brain_noAnchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll Brain all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, noAnchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=allHiSS sample=Brain
		visibility full


		track Cap1_hsAll_Brain_noAnchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Brain cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, noAnchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=Brain
		visibility full


		track Cap1_hsAll_Brain_noAnchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Brain cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, noAnchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=Brain
		visibility full


		track Cap1_hsAll_Brain_noAnchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Brain polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, noAnchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=Brain
		visibility full


		track Cap1_hsAll_Brain_noAnchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll Brain all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, noAnchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=all sample=Brain
		visibility full


		track Cap1_hsAll_Brain_noAnchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Brain cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, noAnchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupported sample=Brain
		visibility full


		track Cap1_hsAll_Brain_noAnchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Brain cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, noAnchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupported sample=Brain
		visibility full


		track Cap1_hsAll_Brain_noAnchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Brain_stranded.exons.all.gtag.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Brain polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Brain, noAnchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupported sample=Brain
		visibility full


		track Cap1_hsAll_Heart_noAnchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll Heart all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, noAnchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=allHiSS sample=Heart
		visibility full


		track Cap1_hsAll_Heart_noAnchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Heart cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, noAnchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=Heart
		visibility full


		track Cap1_hsAll_Heart_noAnchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Heart cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, noAnchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=Heart
		visibility full


		track Cap1_hsAll_Heart_noAnchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Heart polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, noAnchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=Heart
		visibility full


		track Cap1_hsAll_Heart_noAnchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll Heart all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, noAnchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=all sample=Heart
		visibility full


		track Cap1_hsAll_Heart_noAnchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Heart cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, noAnchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupported sample=Heart
		visibility full


		track Cap1_hsAll_Heart_noAnchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Heart cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, noAnchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupported sample=Heart
		visibility full


		track Cap1_hsAll_Heart_noAnchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Heart_stranded.exons.all.gtag.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Heart polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Heart, noAnchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupported sample=Heart
		visibility full


		track Cap1_hsAll_HeLa_noAnchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll HeLa all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, noAnchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=allHiSS sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_noAnchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll HeLa cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, noAnchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_noAnchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll HeLa cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, noAnchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_noAnchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll HeLa polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, noAnchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_noAnchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll HeLa all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, noAnchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=all sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_noAnchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll HeLa cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, noAnchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupported sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_noAnchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll HeLa cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, noAnchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupported sample=HeLa
		visibility full


		track Cap1_hsAll_HeLa_noAnchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_HeLa_stranded.exons.all.gtag.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll HeLa polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: HeLa, noAnchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupported sample=HeLa
		visibility full


		track Cap1_hsAll_K562_noAnchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll K562 all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, noAnchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=allHiSS sample=K562
		visibility full


		track Cap1_hsAll_K562_noAnchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll K562 cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, noAnchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=K562
		visibility full


		track Cap1_hsAll_K562_noAnchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll K562 cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, noAnchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=K562
		visibility full


		track Cap1_hsAll_K562_noAnchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll K562 polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, noAnchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=K562
		visibility full


		track Cap1_hsAll_K562_noAnchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll K562 all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, noAnchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=all sample=K562
		visibility full


		track Cap1_hsAll_K562_noAnchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll K562 cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, noAnchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupported sample=K562
		visibility full


		track Cap1_hsAll_K562_noAnchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll K562 cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, noAnchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupported sample=K562
		visibility full


		track Cap1_hsAll_K562_noAnchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_K562_stranded.exons.all.gtag.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll K562 polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: K562, noAnchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupported sample=K562
		visibility full


		track Cap1_hsAll_Liver_noAnchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll Liver all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, noAnchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=allHiSS sample=Liver
		visibility full


		track Cap1_hsAll_Liver_noAnchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Liver cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, noAnchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=Liver
		visibility full


		track Cap1_hsAll_Liver_noAnchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Liver cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, noAnchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=Liver
		visibility full


		track Cap1_hsAll_Liver_noAnchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Liver polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, noAnchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=Liver
		visibility full


		track Cap1_hsAll_Liver_noAnchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll Liver all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, noAnchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=all sample=Liver
		visibility full


		track Cap1_hsAll_Liver_noAnchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Liver cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, noAnchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupported sample=Liver
		visibility full


		track Cap1_hsAll_Liver_noAnchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Liver cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, noAnchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupported sample=Liver
		visibility full


		track Cap1_hsAll_Liver_noAnchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Liver_stranded.exons.all.gtag.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Liver polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Liver, noAnchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupported sample=Liver
		visibility full


		track Cap1_hsAll_Testes_noAnchormerged_all_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll Testes all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, noAnchor-merged all _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=allHiSS sample=Testes
		visibility full


		track Cap1_hsAll_Testes_noAnchormerged_cagepolyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Testes cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, noAnchor-merged cagepolyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupportedHiSS sample=Testes
		visibility full


		track Cap1_hsAll_Testes_noAnchormerged_cageSupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Testes cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, noAnchor-merged cageSupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupportedHiSS sample=Testes
		visibility full


		track Cap1_hsAll_Testes_noAnchormerged_polyASupported_HiSeq-supported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.HiSS.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Testes polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, noAnchor-merged polyASupported _HiSeq-supported
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupportedHiSS sample=Testes
		visibility full


		track Cap1_hsAll_Testes_noAnchormerged_all
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.noAnchor.compmerge.all.bb
		shortLabel Cap1 hsAll Testes all noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, noAnchor-merged all 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=all sample=Testes
		visibility full


		track Cap1_hsAll_Testes_noAnchormerged_cagepolyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.noAnchor.compmerge.cage+polyASupported.bb
		shortLabel Cap1 hsAll Testes cagepolyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, noAnchor-merged cagepolyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cagepolyASupported sample=Testes
		visibility full


		track Cap1_hsAll_Testes_noAnchormerged_cageSupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.noAnchor.compmerge.cageSupported.bb
		shortLabel Cap1 hsAll Testes cageSupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, noAnchor-merged cageSupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=cageSupported sample=Testes
		visibility full


		track Cap1_hsAll_Testes_noAnchormerged_polyASupported
		bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/hsAll_Cap1_Testes_stranded.exons.all.gtag.noAnchor.compmerge.polyASupported.bb
		shortLabel Cap1 hsAll Testes polyASupported noAnchor-merged
		longLabel GENCODE Capture Cap1, hsAll, tissue: Testes, noAnchor-merged polyASupported 
		type bigBed 12
		searchIndex name
		parent mergednoAnchor
		viewUi on
		subGroups filter=polyASupported sample=Testes
		visibility full