Writing to file model_8states/transitions_8.txt Writing to file model_8states/emissions_8.txt Writing to file model_8states/emissions_8.svg Writing to file model_8states/emissions_8.png Writing to file model_8states/transitions_8.png Writing to file model_8states/transitions_8.svg Writing to file model_8states/model_8.txt Iteration Estimated Log Likelihood Change Total Time (secs) 1 -4188053.105 - 3.8 2 -3801488.634 386564.472 68.6 3 -3685086.209 116402.424 133.0 4 -3612668.243 72417.967 195.0 5 -3590123.330 22544.912 256.9 6 -3585296.521 4826.809 318.7 7 -3583326.450 1970.071 380.3 8 -3582279.757 1046.693 442.1 9 -3581729.839 549.918 507.4 10 -3581411.561 318.278 570.0 11 -3581181.410 230.151 631.0 12 -3580976.902 204.508 691.8 13 -3580769.437 207.464 752.5 14 -3580539.732 229.705 813.3 15 -3580264.983 274.750 873.7 16 -3579905.834 359.149 934.1 17 -3579377.263 528.571 994.5 18 -3578447.481 929.782 1055.8 19 -3576192.173 2255.307 1117.2 20 -3566308.561 9883.613 1178.6 21 -3534693.822 31614.739 1247.9 22 -3511787.296 22906.526 1311.1 23 -3492427.906 19359.390 1374.0 24 -3471450.595 20977.312 1436.4 25 -3464895.777 6554.818 1510.0 26 -3463164.780 1730.997 1583.8 27 -3462374.235 790.544 1653.0 28 -3461856.041 518.194 1715.7 29 -3461430.265 425.776 1777.4 30 -3461092.955 337.310 1839.0 31 -3460845.884 247.070 1900.5 32 -3460670.670 175.214 1962.1 33 -3460546.635 124.036 2032.9 34 -3460458.161 88.474 2097.7 35 -3460394.105 64.055 2158.5 36 -3460347.020 47.086 2221.1 37 -3460311.963 35.057 2282.8 38 -3460285.596 26.368 2346.0 39 -3460265.601 19.995 2410.1 40 -3460250.338 15.263 2471.6 41 -3460238.622 11.716 2532.9 42 -3460229.586 9.036 2594.5 43 -3460222.589 6.997 2657.2 44 -3460217.152 5.437 2718.4 45 -3460212.913 4.239 2781.8 46 -3460209.599 3.314 2842.5 47 -3460207.000 2.599 2903.5 48 -3460204.955 2.045 2964.3 49 -3460203.342 1.613 3025.2 50 -3460202.065 1.277 3086.0 51 -3460201.051 1.014 3146.6 52 -3460200.243 0.808 3207.3 53 -3460199.597 0.646 3268.0 54 -3460199.078 0.519 3328.8 55 -3460198.660 0.418 3389.6 56 -3460198.321 0.338 3450.4 57 -3460198.046 0.275 3511.6 58 -3460197.822 0.225 3572.3 59 -3460197.637 0.184 3633.3 60 -3460197.486 0.152 3694.8 61 -3460197.360 0.125 3757.9 62 -3460197.256 0.104 3830.7 63 -3460197.169 0.087 3891.5 64 -3460197.097 0.073 3952.3 65 -3460197.035 0.061 4012.9 66 -3460196.984 0.052 4073.6 67 -3460196.940 0.044 4134.7 68 -3460196.903 0.037 4195.7 69 -3460196.871 0.032 4256.6 70 -3460196.844 0.027 4322.6 71 -3460196.821 0.023 4384.1 72 -3460196.801 0.020 4445.4 73 -3460196.784 0.017 4507.1 74 -3460196.769 0.015 4568.6 75 -3460196.756 0.013 4630.1 76 -3460196.745 0.011 4691.7 77 -3460196.735 0.010 4753.0 78 -3460196.727 0.008 4814.2 79 -3460196.719 0.007 4875.4 80 -3460196.713 0.006 4936.7 81 -3460196.707 0.006 4998.7 82 -3460196.702 0.005 5060.2 83 -3460196.698 0.004 5121.8 84 -3460196.694 0.004 5183.2 85 -3460196.691 0.003 5244.7 86 -3460196.688 0.003 5306.4 87 -3460196.686 0.003 5368.0 88 -3460196.683 0.002 5429.8 89 -3460196.681 0.002 5491.2 90 -3460196.680 0.002 5552.9 91 -3460196.678 0.002 5614.3 92 -3460196.677 0.001 5675.8 93 -3460196.676 0.001 5737.2 94 -3460196.675 0.001 5802.0 95 -3460196.674 0.001 5864.2 Writing to file model_8states/L3_8_segments.bed Writing to file model_8states/LP_8_segments.bed Writing to file model_8states/WP_8_segments.bed Writing to file model_8states/L3_8_dense.bed Writing to file model_8states/L3_8_expanded.bed Writing to file model_8states/LP_8_dense.bed Writing to file model_8states/LP_8_expanded.bed Writing to file model_8states/WP_8_dense.bed Writing to file model_8states/WP_8_expanded.bed Writing to file model_8states/L3_8_overlap.txt Writing to file model_8states/L3_8_overlap.png Writing to file model_8states/L3_8_overlap.svg Writing to file model_8states/L3_8_RefSeqTES_neighborhood.txt Writing to file model_8states/L3_8_RefSeqTES_neighborhood.png Writing to file model_8states/L3_8_RefSeqTES_neighborhood.svg Writing to file model_8states/L3_8_RefSeqTSS_neighborhood.txt Writing to file model_8states/L3_8_RefSeqTSS_neighborhood.png Writing to file model_8states/L3_8_RefSeqTSS_neighborhood.svg Writing to file model_8states/LP_8_overlap.txt Writing to file model_8states/LP_8_overlap.png Writing to file model_8states/LP_8_overlap.svg Writing to file model_8states/LP_8_RefSeqTES_neighborhood.txt Writing to file model_8states/LP_8_RefSeqTES_neighborhood.png Writing to file model_8states/LP_8_RefSeqTES_neighborhood.svg Writing to file model_8states/LP_8_RefSeqTSS_neighborhood.txt Writing to file model_8states/LP_8_RefSeqTSS_neighborhood.png Writing to file model_8states/LP_8_RefSeqTSS_neighborhood.svg Writing to file model_8states/WP_8_overlap.txt Writing to file model_8states/WP_8_overlap.png Writing to file model_8states/WP_8_overlap.svg Writing to file model_8states/WP_8_RefSeqTES_neighborhood.txt Writing to file model_8states/WP_8_RefSeqTES_neighborhood.png Writing to file model_8states/WP_8_RefSeqTES_neighborhood.svg Writing to file model_8states/WP_8_RefSeqTSS_neighborhood.txt Writing to file model_8states/WP_8_RefSeqTSS_neighborhood.png Writing to file model_8states/WP_8_RefSeqTSS_neighborhood.svg Warning could not automatically open in a browser model_8states/webpage_8.html