Using 4 threads for Baum-Welch training Writing to file RC_model_8states/transitions_8.txt Writing to file RC_model_8states/emissions_8.txt Writing to file RC_model_8states/emissions_8.svg Writing to file RC_model_8states/emissions_8.png Writing to file RC_model_8states/transitions_8.png Writing to file RC_model_8states/transitions_8.svg Writing to file RC_model_8states/model_8.txt Iteration Estimated Log Likelihood Change Total Time (secs) 1 -4671588.639 - 2.9 2 -4233631.262 437957.377 5.4 3 -4149272.130 84359.132 7.9 4 -4096562.195 52709.935 9.9 5 -4061506.950 35055.246 12.1 6 -4038932.354 22574.596 14.0 7 -4023614.947 15317.407 16.0 8 -4011314.148 12300.799 18.0 9 -4000340.727 10973.421 19.9 10 -3991522.124 8818.602 21.8 11 -3986333.526 5188.599 23.8 12 -3984958.723 1374.803 26.0 13 -3984431.941 526.782 28.8 14 -3984165.391 266.550 30.7 15 -3983995.810 169.581 33.0 16 -3983869.624 126.186 35.2 17 -3983767.327 102.297 37.2 18 -3983678.358 88.969 39.2 19 -3983593.688 84.670 41.0 20 -3983505.625 88.063 43.5 21 -3983408.399 97.226 45.5 22 -3983295.158 113.241 47.5 23 -3983158.903 136.255 49.5 24 -3982995.939 162.964 51.6 25 -3982808.302 187.637 53.6 26 -3982599.982 208.320 56.0 27 -3982391.011 208.972 58.0 28 -3982218.732 172.279 60.1 29 -3982113.584 105.148 62.2 30 -3982059.722 53.862 64.4 31 -3982033.418 26.305 66.4 32 -3982020.693 12.725 68.5 33 -3982014.442 6.250 70.4 34 -3982011.296 3.147 72.3 35 -3982009.669 1.626 74.5 36 -3982008.806 0.863 76.4 37 -3982008.336 0.471 78.5 38 -3982008.072 0.264 80.6 39 -3982007.919 0.153 82.6 40 -3982007.827 0.092 84.5 41 -3982007.770 0.057 86.5 42 -3982007.733 0.037 88.5 43 -3982007.708 0.025 90.5 44 -3982007.690 0.018 92.9 45 -3982007.677 0.013 94.7 46 -3982007.667 0.010 96.6 47 -3982007.660 0.008 98.5 48 -3982007.653 0.006 100.4 49 -3982007.648 0.005 102.3 50 -3982007.644 0.004 104.2 51 -3982007.640 0.004 106.3 52 -3982007.637 0.003 108.4 53 -3982007.634 0.003 110.3 54 -3982007.632 0.002 112.3 55 -3982007.630 0.002 114.2 56 -3982007.628 0.002 116.2 57 -3982007.626 0.002 118.1 58 -3982007.625 0.002 120.1 59 -3982007.623 0.001 122.0 60 -3982007.622 0.001 124.0 61 -3982007.621 0.001 125.8 62 -3982007.620 0.001 127.9 63 -3982007.619 0.001 129.7 Writing to file RC_model_8states/L3_8_segments.bed Writing to file RC_model_8states/LP_8_segments.bed Writing to file RC_model_8states/WP_8_segments.bed Writing to file RC_model_8states/L3_8_overlap.txt Writing to file RC_model_8states/L3_8_overlap.png Writing to file RC_model_8states/L3_8_overlap.svg Writing to file RC_model_8states/L3_8_RefSeqTES_neighborhood.txt Writing to file RC_model_8states/L3_8_RefSeqTES_neighborhood.png Writing to file RC_model_8states/L3_8_RefSeqTES_neighborhood.svg Writing to file RC_model_8states/L3_8_RefSeqTSS_neighborhood.txt Writing to file RC_model_8states/L3_8_RefSeqTSS_neighborhood.png Writing to file RC_model_8states/L3_8_RefSeqTSS_neighborhood.svg Writing to file RC_model_8states/LP_8_overlap.txt Writing to file RC_model_8states/LP_8_overlap.png Writing to file RC_model_8states/LP_8_overlap.svg Writing to file RC_model_8states/LP_8_RefSeqTES_neighborhood.txt Writing to file RC_model_8states/LP_8_RefSeqTES_neighborhood.png Writing to file RC_model_8states/LP_8_RefSeqTES_neighborhood.svg Writing to file RC_model_8states/LP_8_RefSeqTSS_neighborhood.txt Writing to file RC_model_8states/LP_8_RefSeqTSS_neighborhood.png Writing to file RC_model_8states/LP_8_RefSeqTSS_neighborhood.svg Writing to file RC_model_8states/WP_8_overlap.txt Writing to file RC_model_8states/WP_8_overlap.png Writing to file RC_model_8states/WP_8_overlap.svg Writing to file RC_model_8states/WP_8_RefSeqTES_neighborhood.txt Writing to file RC_model_8states/WP_8_RefSeqTES_neighborhood.png Writing to file RC_model_8states/WP_8_RefSeqTES_neighborhood.svg Writing to file RC_model_8states/WP_8_RefSeqTSS_neighborhood.txt Writing to file RC_model_8states/WP_8_RefSeqTSS_neighborhood.png Writing to file RC_model_8states/WP_8_RefSeqTSS_neighborhood.svg Warning could not automatically open in a browser RC_model_8states/webpage_8.html