ChromHMM Report
Input Directory: outputbinarydir_RNASeq_CHIPSeq/
Output Directory: RC_model_9states
Number of States: 9
Assembly: dm6
Full ChromHMM command: LearnModel -nobrowser -p 4 outputbinarydir_RNASeq_CHIPSeq/ RC_model_9states 9 dm6
Model Parameters

Emission Parameter SVG File
Emission Parameter Tab-Delimited Text File

Transition Parameter SVG File
Transition Parameter Tab-Delimited Text File
All Model Parameters Tab-Delimited Text File
Genome Segmentation Files
L3_9 Segmentation File (Four Column Bed File)
LP_9 Segmentation File (Four Column Bed File)
WP_9 Segmentation File (Four Column Bed File)
State Enrichments
L3_9 Enrichments
L3_9 Overlap Enrichment SVG File
L3_9 Overlap Enrichment Tab-Delimited Text File
L3_9_RefSeqTES_neighborhood Enrichment SVG File
L3_9_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File
L3_9_RefSeqTSS_neighborhood Enrichment SVG File
L3_9_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File
LP_9 Enrichments
LP_9 Overlap Enrichment SVG File
LP_9 Overlap Enrichment Tab-Delimited Text File
LP_9_RefSeqTES_neighborhood Enrichment SVG File
LP_9_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File
LP_9_RefSeqTSS_neighborhood Enrichment SVG File
LP_9_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File
WP_9 Enrichments
WP_9 Overlap Enrichment SVG File
WP_9 Overlap Enrichment Tab-Delimited Text File
WP_9_RefSeqTES_neighborhood Enrichment SVG File
WP_9_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File
WP_9_RefSeqTSS_neighborhood Enrichment SVG File
WP_9_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File