Using 4 threads for Baum-Welch training Writing to file tissue-stage_RC_model_10states/transitions_10.txt Writing to file tissue-stage_RC_model_10states/emissions_10.txt Writing to file tissue-stage_RC_model_10states/emissions_10.svg Writing to file tissue-stage_RC_model_10states/emissions_10.png Writing to file tissue-stage_RC_model_10states/transitions_10.png Writing to file tissue-stage_RC_model_10states/transitions_10.svg Writing to file tissue-stage_RC_model_10states/model_10.txt Iteration Estimated Log Likelihood Change Total Time (secs) 1 -13463572.141 - 11.5 2 -12079248.893 1384323.248 20.7 3 -11725537.653 353711.240 29.1 4 -11539686.737 185850.916 41.3 5 -11434810.204 104876.533 49.2 6 -11374800.601 60009.603 58.0 7 -11334131.579 40669.022 65.7 8 -11292344.730 41786.849 73.7 9 -11257288.612 35056.118 82.4 10 -11236746.157 20542.455 91.3 11 -11225548.312 11197.845 100.1 12 -11219004.124 6544.188 109.3 13 -11215083.469 3920.656 118.5 14 -11212645.783 2437.686 127.7 15 -11211040.180 1605.603 135.3 16 -11209930.902 1109.278 143.7 17 -11209141.009 789.893 151.8 18 -11208563.377 577.632 160.3 19 -11208131.473 431.904 168.8 20 -11207803.579 327.894 176.9 21 -11207551.858 251.721 185.4 22 -11207356.858 195.000 193.7 23 -11207204.707 152.151 202.3 24 -11207085.251 119.456 210.0 25 -11206990.901 94.350 217.9 26 -11206915.934 74.967 225.1 27 -11206856.022 59.913 233.1 28 -11206807.879 48.143 240.6 29 -11206769.001 38.877 248.5 30 -11206737.468 31.533 257.4 31 -11206711.796 25.673 265.1 32 -11206690.827 20.968 273.3 33 -11206673.655 17.172 281.4 34 -11206659.562 14.094 289.1 35 -11206647.974 11.588 297.5 36 -11206638.434 9.541 305.0 37 -11206630.570 7.864 312.7 38 -11206624.082 6.488 320.1 39 -11206618.727 5.356 328.9 40 -11206614.303 4.424 337.0 41 -11206610.648 3.655 346.6 42 -11206607.627 3.021 354.1 43 -11206605.129 2.498 363.9 44 -11206603.064 2.065 371.7 45 -11206601.356 1.708 380.3 46 -11206599.943 1.413 388.7 47 -11206598.774 1.168 396.6 48 -11206597.808 0.967 405.9 49 -11206597.008 0.800 413.9 50 -11206596.347 0.662 422.0 51 -11206595.799 0.547 430.5 52 -11206595.346 0.453 439.6 53 -11206594.971 0.375 449.9 54 -11206594.660 0.310 458.5 55 -11206594.403 0.257 466.8 56 -11206594.191 0.213 475.8 57 -11206594.014 0.176 484.2 58 -11206593.868 0.146 492.6 59 -11206593.747 0.121 500.7 60 -11206593.646 0.100 508.2 61 -11206593.562 0.084 516.9 62 -11206593.493 0.069 525.3 63 -11206593.436 0.057 533.9 64 -11206593.389 0.047 543.2 65 -11206593.349 0.039 551.5 66 -11206593.317 0.033 559.9 67 -11206593.290 0.027 568.9 68 -11206593.267 0.022 577.3 69 -11206593.248 0.019 585.0 70 -11206593.233 0.015 593.9 71 -11206593.220 0.013 602.6 72 -11206593.210 0.011 611.1 73 -11206593.195 0.014 618.4 74 -11206593.189 0.007 626.3 75 -11206593.183 0.005 633.7 76 -11206593.179 0.004 642.1 77 -11206593.175 0.004 650.2 78 -11206593.172 0.003 658.3 79 -11206593.169 0.002 665.6 80 -11206593.167 0.002 674.8 81 -11206593.166 0.002 682.8 82 -11206593.164 0.001 690.2 83 -11206593.163 0.001 698.5 84 -11206593.162 0.001 707.1 Writing to file tissue-stage_RC_model_10states/antenna_L3_10_segments.bed Writing to file tissue-stage_RC_model_10states/antenna_LP_10_segments.bed Writing to file tissue-stage_RC_model_10states/antenna_WP_10_segments.bed Writing to file tissue-stage_RC_model_10states/eye_L3_10_segments.bed Writing to file tissue-stage_RC_model_10states/eye_LP_10_segments.bed Writing to file tissue-stage_RC_model_10states/eye_WP_10_segments.bed Writing to file tissue-stage_RC_model_10states/leg_L3_10_segments.bed Writing to file tissue-stage_RC_model_10states/leg_LP_10_segments.bed Writing to file tissue-stage_RC_model_10states/leg_WP_10_segments.bed Writing to file tissue-stage_RC_model_10states/wing_L3_10_segments.bed Writing to file tissue-stage_RC_model_10states/wing_LP_10_segments.bed Writing to file tissue-stage_RC_model_10states/wing_WP_10_segments.bed Writing to file tissue-stage_RC_model_10states/antenna_L3_10_overlap.txt Writing to file tissue-stage_RC_model_10states/antenna_L3_10_overlap.png Writing to file tissue-stage_RC_model_10states/antenna_L3_10_overlap.svg Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/antenna_LP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/antenna_LP_10_overlap.png Writing to file tissue-stage_RC_model_10states/antenna_LP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/antenna_WP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/antenna_WP_10_overlap.png Writing to file tissue-stage_RC_model_10states/antenna_WP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_L3_10_overlap.txt Writing to file tissue-stage_RC_model_10states/eye_L3_10_overlap.png Writing to file tissue-stage_RC_model_10states/eye_L3_10_overlap.svg Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_LP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/eye_LP_10_overlap.png Writing to file tissue-stage_RC_model_10states/eye_LP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_WP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/eye_WP_10_overlap.png Writing to file tissue-stage_RC_model_10states/eye_WP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_L3_10_overlap.txt Writing to file tissue-stage_RC_model_10states/leg_L3_10_overlap.png Writing to file tissue-stage_RC_model_10states/leg_L3_10_overlap.svg Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_LP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/leg_LP_10_overlap.png Writing to file tissue-stage_RC_model_10states/leg_LP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_WP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/leg_WP_10_overlap.png Writing to file tissue-stage_RC_model_10states/leg_WP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_L3_10_overlap.txt Writing to file tissue-stage_RC_model_10states/wing_L3_10_overlap.png Writing to file tissue-stage_RC_model_10states/wing_L3_10_overlap.svg Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_LP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/wing_LP_10_overlap.png Writing to file tissue-stage_RC_model_10states/wing_LP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_WP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/wing_WP_10_overlap.png Writing to file tissue-stage_RC_model_10states/wing_WP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTSS_neighborhood.svg Warning could not automatically open in a browser tissue-stage_RC_model_10states/webpage_10.html