Using 4 threads for Baum-Welch training Writing to file tissue-stage_RC_model_9states/transitions_9.txt Writing to file tissue-stage_RC_model_9states/emissions_9.txt Writing to file tissue-stage_RC_model_9states/emissions_9.svg Writing to file tissue-stage_RC_model_9states/emissions_9.png Writing to file tissue-stage_RC_model_9states/transitions_9.png Writing to file tissue-stage_RC_model_9states/transitions_9.svg Writing to file tissue-stage_RC_model_9states/model_9.txt Iteration Estimated Log Likelihood Change Total Time (secs) 1 -13549081.729 - 8.5 2 -12198577.219 1350504.509 15.2 3 -11871696.329 326880.891 21.7 4 -11703375.033 168321.296 27.6 5 -11635376.351 67998.681 34.3 6 -11604878.037 30498.314 41.3 7 -11590372.752 14505.285 47.8 8 -11577116.855 13255.897 54.8 9 -11560882.227 16234.628 62.0 10 -11541421.110 19461.117 68.8 11 -11521906.337 19514.772 75.3 12 -11506645.241 15261.096 82.1 13 -11497626.930 9018.311 89.1 14 -11492118.815 5508.116 96.1 15 -11488329.623 3789.192 103.2 16 -11485534.580 2795.042 110.0 17 -11483331.647 2202.933 117.2 18 -11481526.040 1805.608 124.1 19 -11480010.441 1515.598 130.7 20 -11478714.893 1295.548 136.9 21 -11477593.372 1121.521 143.5 22 -11476630.120 963.253 150.1 23 -11475812.135 817.985 156.8 24 -11475118.965 693.169 163.2 25 -11474527.221 591.745 169.5 26 -11474010.595 516.625 176.1 27 -11473546.699 463.896 182.7 28 -11473117.928 428.771 189.3 29 -11472715.045 402.883 195.7 30 -11472336.863 378.182 202.0 31 -11471987.378 349.485 208.4 32 -11471671.750 315.628 215.2 33 -11471393.177 278.573 221.9 34 -11471151.700 241.477 228.9 35 -11470944.668 207.033 235.6 36 -11470767.902 176.765 242.0 37 -11470616.772 151.131 248.4 38 -11470486.860 129.912 254.8 39 -11470374.274 112.586 261.3 40 -11470275.719 98.555 267.8 41 -11470188.459 87.259 274.7 42 -11470110.244 78.216 281.9 43 -11470039.214 71.029 288.6 44 -11469973.828 65.386 295.3 45 -11469912.786 61.042 302.2 46 -11469854.971 57.814 308.6 47 -11469799.402 55.570 315.4 48 -11469745.180 54.222 322.4 49 -11469691.452 53.728 329.2 50 -11469637.369 54.083 336.1 51 -11469582.038 55.330 342.2 52 -11469524.477 57.562 349.1 53 -11469463.543 60.933 355.5 54 -11469397.857 65.687 361.9 55 -11469325.678 72.179 368.2 56 -11469244.744 80.934 374.6 57 -11469152.022 92.722 380.6 58 -11469043.334 108.689 387.0 59 -11468912.779 130.555 393.2 60 -11468751.841 160.938 399.3 61 -11468547.986 203.856 405.9 62 -11468282.499 265.487 412.6 63 -11467927.371 355.128 419.3 64 -11467441.724 485.647 426.0 65 -11466768.796 672.928 433.1 66 -11465835.441 933.355 439.8 67 -11464561.970 1273.472 446.4 68 -11462887.196 1674.774 452.8 69 -11460792.579 2094.617 459.2 70 -11458312.510 2480.069 465.9 71 -11455536.462 2776.048 472.6 72 -11452592.020 2944.442 479.3 73 -11449619.276 2972.744 486.0 74 -11446744.895 2874.382 492.5 75 -11444062.289 2682.606 499.4 76 -11441622.646 2439.643 506.0 77 -11439438.077 2184.569 513.0 78 -11437492.301 1945.775 519.7 79 -11435752.817 1739.484 526.0 80 -11434178.390 1574.427 532.3 81 -11432717.739 1460.651 539.0 82 -11431292.491 1425.248 545.4 83 -11429730.137 1562.354 551.5 84 -11427677.685 2052.452 558.2 85 -11424807.650 2870.035 564.7 86 -11421264.484 3543.166 571.2 87 -11417549.766 3714.717 577.6 88 -11414026.899 3522.867 584.1 89 -11410781.561 3245.339 590.9 90 -11407781.100 3000.461 597.6 91 -11404941.219 2839.881 604.4 92 -11402167.959 2773.260 611.3 93 -11399393.699 2774.260 618.1 94 -11396596.364 2797.335 624.5 95 -11393805.678 2790.685 631.1 96 -11391094.611 2711.067 637.6 97 -11388551.615 2542.996 644.0 98 -11386243.269 2308.347 650.3 99 -11384197.054 2046.215 656.6 100 -11382409.863 1787.191 663.2 101 -11380864.329 1545.534 670.2 102 -11379538.917 1325.411 677.1 103 -11378411.279 1127.638 683.8 104 -11377459.001 952.277 690.0 105 -11376660.089 798.912 696.6 106 -11375993.547 666.542 703.4 107 -11375439.925 553.622 709.8 108 -11374981.725 458.201 716.3 109 -11374603.607 378.117 723.1 110 -11374292.349 311.259 729.2 111 -11374036.636 255.713 735.6 112 -11373826.859 209.776 742.0 113 -11373654.931 171.928 748.0 114 -11373514.100 140.830 754.7 115 -11373398.773 115.327 761.4 116 -11373304.335 94.438 768.0 117 -11373226.994 77.341 774.5 118 -11373163.640 63.354 781.0 119 -11373111.728 51.912 787.7 120 -11373069.178 42.551 794.5 121 -11373034.287 34.891 801.8 122 -11373005.665 28.621 808.9 123 -11372982.178 23.488 815.8 124 -11372962.895 19.282 822.2 125 -11372947.060 15.836 828.6 126 -11372934.049 13.010 835.7 127 -11372923.357 10.693 842.5 128 -11372914.566 8.791 849.4 129 -11372907.336 7.230 855.8 130 -11372901.389 5.948 862.6 131 -11372896.494 4.894 869.2 132 -11372892.466 4.029 876.5 133 -11372889.148 3.317 883.5 134 -11372886.416 2.732 890.0 135 -11372884.166 2.251 897.1 136 -11372882.311 1.855 904.1 137 -11372880.782 1.529 910.9 138 -11372879.522 1.260 917.8 139 -11372878.483 1.039 924.4 140 -11372877.626 0.857 931.1 141 -11372876.919 0.707 937.7 142 -11372876.336 0.583 944.6 143 -11372875.854 0.481 951.3 144 -11372875.457 0.398 957.5 145 -11372875.085 0.372 964.5 146 -11372867.864 7.221 971.8 147 -11372586.475 281.388 978.6 148 -11372283.518 302.958 985.4 149 -11372276.787 6.731 992.1 150 -11372276.339 0.448 998.9 151 -11372276.155 0.183 1005.9 152 -11372276.048 0.107 1013.1 153 -11372275.972 0.076 1020.1 154 -11372275.912 0.059 1026.7 155 -11372275.865 0.048 1033.1 156 -11372275.825 0.040 1039.9 157 -11372275.793 0.032 1046.3 158 -11372275.767 0.026 1053.2 159 -11372275.746 0.022 1059.6 160 -11372275.728 0.018 1066.7 161 -11372275.713 0.015 1073.5 162 -11372275.700 0.012 1080.2 163 -11372275.690 0.010 1086.8 164 -11372275.682 0.008 1093.4 165 -11372275.675 0.007 1100.1 166 -11372275.669 0.006 1106.5 167 -11372275.659 0.010 1112.6 168 -11372275.655 0.003 1118.7 169 -11372275.653 0.003 1124.8 170 -11372275.650 0.002 1130.8 171 -11372275.648 0.002 1136.8 172 -11372275.647 0.002 1142.9 173 -11372275.646 0.001 1149.0 174 -11372275.645 0.001 1154.9 175 -11372275.644 0.001 1160.9 Writing to file tissue-stage_RC_model_9states/antenna_L3_9_segments.bed Writing to file tissue-stage_RC_model_9states/antenna_LP_9_segments.bed Writing to file tissue-stage_RC_model_9states/antenna_WP_9_segments.bed Writing to file tissue-stage_RC_model_9states/eye_L3_9_segments.bed Writing to file tissue-stage_RC_model_9states/eye_LP_9_segments.bed Writing to file tissue-stage_RC_model_9states/eye_WP_9_segments.bed Writing to file tissue-stage_RC_model_9states/leg_L3_9_segments.bed Writing to file tissue-stage_RC_model_9states/leg_LP_9_segments.bed Writing to file tissue-stage_RC_model_9states/leg_WP_9_segments.bed Writing to file tissue-stage_RC_model_9states/wing_L3_9_segments.bed Writing to file tissue-stage_RC_model_9states/wing_LP_9_segments.bed Writing to file tissue-stage_RC_model_9states/wing_WP_9_segments.bed Writing to file tissue-stage_RC_model_9states/antenna_L3_9_overlap.txt Writing to file tissue-stage_RC_model_9states/antenna_L3_9_overlap.png Writing to file tissue-stage_RC_model_9states/antenna_L3_9_overlap.svg Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/antenna_LP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/antenna_LP_9_overlap.png Writing to file tissue-stage_RC_model_9states/antenna_LP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/antenna_WP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/antenna_WP_9_overlap.png Writing to file tissue-stage_RC_model_9states/antenna_WP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_L3_9_overlap.txt Writing to file tissue-stage_RC_model_9states/eye_L3_9_overlap.png Writing to file tissue-stage_RC_model_9states/eye_L3_9_overlap.svg Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_LP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/eye_LP_9_overlap.png Writing to file tissue-stage_RC_model_9states/eye_LP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_WP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/eye_WP_9_overlap.png Writing to file tissue-stage_RC_model_9states/eye_WP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_L3_9_overlap.txt Writing to file tissue-stage_RC_model_9states/leg_L3_9_overlap.png Writing to file tissue-stage_RC_model_9states/leg_L3_9_overlap.svg Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_LP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/leg_LP_9_overlap.png Writing to file tissue-stage_RC_model_9states/leg_LP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_WP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/leg_WP_9_overlap.png Writing to file tissue-stage_RC_model_9states/leg_WP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_L3_9_overlap.txt Writing to file tissue-stage_RC_model_9states/wing_L3_9_overlap.png Writing to file tissue-stage_RC_model_9states/wing_L3_9_overlap.svg Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_LP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/wing_LP_9_overlap.png Writing to file tissue-stage_RC_model_9states/wing_LP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_WP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/wing_WP_9_overlap.png Writing to file tissue-stage_RC_model_9states/wing_WP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTSS_neighborhood.svg Warning could not automatically open in a browser tissue-stage_RC_model_9states/webpage_9.html