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size=18M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CellPamTranscriptDeNovoV2.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=A549; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000184; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7482; geoSampleAccession=GSM767854; labExpId=LID9005,LID9006; bioRep=021WC,022WC; labProtocolId=021WC-,022WC-; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=e929527ba0c4b55f807a6fd677dbd663; size=6.1M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CellPamTranscriptGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV7; cell=A549; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000184; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4589; geoSampleAccession=GSM767854; labExpId=LID9005,LID9006; bioRep=021WC,022WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549CellPamTranscriptGencV7; type=gtf; md5sum=8e081541337a72c44a68156ed35d4420; size=4.8M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CellPapAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=A549; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000143; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2404; geoSampleAccession=GSM758564; labExpId=LID8963; bioRep=021WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549CellPapAlnRep1; type=bam; md5sum=6ac70824daafd4d48ca7666a8d7f0f36; size=12G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CellPapAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=A549; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000143; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2404; geoSampleAccession=GSM758564; labExpId=LID8963; bioRep=021WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549CellPapAlnRep1; type=bai; md5sum=3976d51809de9a90a2899929905827a0; size=6.9M; 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rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000143; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2405; geoSampleAccession=GSM758564; labExpId=LID8964; bioRep=022WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549CellPapAlnRep2; type=bai; md5sum=a3e4d22810234d83d56ad5a1e3954f75; size=7.3M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CellPapContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=A549; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000143; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3602; geoSampleAccession=GSM758564; labExpId=LID8963,LID8964; bioRep=021WC,022WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549CellPapContigs; type=bedRnaElements; md5sum=04ed6fd4e425f94df02e1d287c5bcb81; size=14M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CellPapExonsDeNovo.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsDeNovo; cell=A549; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000143; dateSubmitted=2012-05-30; dateUnrestricted=2013-03-02; subId=6991; geoSampleAccession=GSM758564; labExpId=LID8963,LID8964; bioRep=021WC,022WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=b9aaf8118fcbd654cf530a7b4f73bbd5; size=7.2M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CellPapExonsGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=A549; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000143; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4549; geoSampleAccession=GSM758564; labExpId=LID8963,LID8964; bioRep=021WC,022WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=03c19397f58f1bf0552ee4c5e14d54e5; size=19M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CellPapFastqRd1Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=A549; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000143; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2404; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=A549; localization=cell; rnaExtract=longPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000143; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7441; geoSampleAccession=GSM758564; labExpId=LID8963,LID8964; bioRep=021WC,022WC; labProtocolId=021WC+,022WC+; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=9920dd2eed55143bd1b759af41b5ed1f; size=1.6M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CellPapGeneGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV7; cell=A549; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000143; 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dataType=RnaSeq; view=MinusSignal; cell=A549; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000143; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2405; geoSampleAccession=GSM758564; labExpId=LID8964; bioRep=022WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549CellPapMinusRawSigRep2; type=bigWig; md5sum=b1aa909c2a71ac9ac5a87c9cc555c527; size=717M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CellPapPlusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=A549; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000143; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2404; geoSampleAccession=GSM758564; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV7; cell=A549; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000143; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4549; geoSampleAccession=GSM758564; labExpId=LID8963,LID8964; bioRep=021WC,022WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549CellPapTranscriptGencV7; type=gtf; md5sum=23bf162e73146232ce26cf7ce21509c1; size=5.1M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapAlnRep3.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5766; labExpId=LID45897; bioRep=087C; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549CytosolPapAlnRep3; type=bam; md5sum=3b490f645453a8aa306c10a542c465a3; size=15G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapAlnRep3.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5766; labExpId=LID45897; bioRep=087C; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549CytosolPapAlnRep3; type=bai; md5sum=76d050d7f6689c1cd230b224374d12da; size=7.8M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapAlnRep4.bam project=wgEncode; 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rnaExtract=longPolyA; readType=2x101D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-03-27; dateUnrestricted=2012-05-14; subId=6386; geoSampleAccession=GSM981246; labExpId=LID45897,LID45898; bioRep=087C,088C; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=gtf; md5sum=12e09a9f94ecd7f1903d99ea82014b55; size=21M; replicate=3,4; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapFastqRd1Rep3.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5766; geoSampleAccession=GSM981246; labExpId=LID45897; bioRep=087C; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=fastq; md5sum=3543c3b3c77b42e5b25ecabda7b6170f; size=11G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapFastqRd1Rep4.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-02-17; dateUnrestricted=2012-05-14; subId=5784; geoSampleAccession=GSM981246; labExpId=LID45898; bioRep=088C; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=fastq; md5sum=eadd44d2aff41d33105cf3e1f0ab0eeb; size=12G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapFastqRd2Rep3.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5766; geoSampleAccession=GSM981246; labExpId=LID45897; bioRep=087C; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=fastq; md5sum=ced4510309d7edbcf88b47abcc8f0797; size=11G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapFastqRd2Rep4.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-02-17; dateUnrestricted=2012-05-14; subId=5784; geoSampleAccession=GSM981246; labExpId=LID45898; bioRep=088C; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=fastq; md5sum=db5f31b63166f8cb24f7f9c4a907b996; size=12G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapGeneDeNovo.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7427; geoSampleAccession=GSM981246; labExpId=LID45897,LID45898; bioRep=087C,088C; labProtocolId=087C+,088C+; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=gff; md5sum=03dfe883a19d279116eb925d5c1a1a6a; size=1.2M; replicate=3,4; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapGeneGencV10.gtf.gz project=wgEncode; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; replicate=4; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-04-27; dateUnrestricted=2012-05-14; subId=6894; geoSampleAccession=GSM981246; labExpId=LID45898; bioRep=088C; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=pdf; md5sum=6964f461dd1643d06b70496953ca3572; size=347K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapSpikeinsRep3.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5766; geoSampleAccession=GSM981246; labExpId=LID45897; bioRep=087C; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=spikeins; md5sum=48c7bff607abc2a667c51e9a92f4133e; size=357M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapSpikeinsRep4.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-02-17; dateUnrestricted=2012-05-14; subId=5784; geoSampleAccession=GSM981246; labExpId=LID45898; bioRep=088C; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=spikeins; md5sum=43dcfc1bf61ff80ec74a3b27686a9a0a; size=376M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapTranscriptDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7427; geoSampleAccession=GSM981246; labExpId=LID45897,LID45898; bioRep=087C,088C; labProtocolId=087C+,088C+; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=gtf; md5sum=92293d37f13b6c4f416146045e645941; size=1.7M; replicate=3,4; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549CytosolPapTranscriptGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV10; cell=A549; localization=cytosol; rnaExtract=longPolyA; readType=2x101D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002624; dateSubmitted=2012-03-27; dateUnrestricted=2012-05-14; subId=6386; geoSampleAccession=GSM981246; labExpId=LID45897,LID45898; bioRep=087C,088C; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549CytosolPapTranscriptGencV10; type=gtf; md5sum=7cc5a47ffecb541cc716a014137684f0; size=5.1M; replicate=3,4; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep3.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-18; dateUnrestricted=2012-05-14; subId=5788; labExpId=LID45899; bioRep=087N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep3; type=bam; md5sum=d3c07fe0bcf0452b7ce0828bb6ef10ac; size=22G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep3.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-18; dateUnrestricted=2012-05-14; subId=5788; labExpId=LID45899; bioRep=087N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep3; type=bai; md5sum=3fd6f51f8131d112476fab08810c7e7d; size=9.3M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep4.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5763; labExpId=LID45900; bioRep=088N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep4; type=bam; md5sum=4b531e6b016327cf1961ae83f009b53e; size=11G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep4.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5763; labExpId=LID45900; bioRep=088N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549NucleusPapAlnRep4; type=bai; md5sum=c1b4226d6b1abf4ef22ad367089211c7; size=7.3M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-03-16; dateUnrestricted=2012-05-14; subId=6036; geoSampleAccession=GSM981247; labExpId=LID45899,LID45900; bioRep=087N,088N; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549NucleusPapContigs; type=bedRnaElements; md5sum=48d0dca14b4d57d6b7496ed55518b24f; size=28M; replicate=3,4; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapExonsDeNovo.gff.gz seqPlatform=Illumina_HiSeq_2000; composite=wgEncodeCshlLongRnaSeq; readType=2x101D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-05-30; dataVersion=ENCODE Jul 2012 Freeze; md5sum=c561fce7d7b32225c99747d95810383a; dateUnrestricted=2013-03-02; size=20M; dccAccession=wgEncodeEH002625; replicate=3,4; view=ExonsDeNovo; labExpId=LID45899,LID45900; subId=7005; cell=A549; rnaExtract=longPolyA; spikeInPool=Nist14; geoSampleAccession=GSM981247; bioRep=087N,088N; lab=CSHL; type=gff; localization=nucleus; labVersion=iIDR; grant=Gingeras; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapExonsGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV10; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-03-27; dateUnrestricted=2012-05-14; subId=6381; geoSampleAccession=GSM981247; labExpId=LID45899,LID45900; bioRep=087N,088N; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=gtf; md5sum=a236696ec866f93b4f9a97398c8d4cc5; size=21M; replicate=3,4; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapFastqRd1Rep3.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-18; dateUnrestricted=2012-05-14; subId=5788; geoSampleAccession=GSM981247; labExpId=LID45899; bioRep=087N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=fastq; md5sum=eb233fb39bdb51bdf7572290ec344bee; size=15G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapFastqRd1Rep4.fastq.gz project=wgEncode; 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labExpId=LID45899; bioRep=087N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=fastq; md5sum=15ecebbad95d140c29eaaa83f4985a26; size=15G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapFastqRd2Rep4.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5763; geoSampleAccession=GSM981247; labExpId=LID45900; bioRep=088N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=fastq; md5sum=8f45fb4617c5b66171cd19caa2df42af; size=7.8G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapGeneDeNovo.gff.gz seqPlatform=Illumina_HiSeq_2000; composite=wgEncodeCshlLongRnaSeq; readType=2x101D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-07-16; dataVersion=ENCODE Jul 2012 Freeze; labProtocolId=087N+,088N+; md5sum=d305b800cb402d786763c445a00d0c62; dateUnrestricted=2013-04-16; size=3.5M; dccAccession=wgEncodeEH002625; replicate=3,4; view=GeneDeNovo; labExpId=LID45899,LID45900; subId=7420; cell=A549; rnaExtract=longPolyA; spikeInPool=Nist14; geoSampleAccession=GSM981247; bioRep=087N,088N; lab=CSHL; type=gff; localization=nucleus; labVersion=iIDR; grant=Gingeras; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapGeneGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV10; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-03-27; dateUnrestricted=2012-05-14; subId=6381; geoSampleAccession=GSM981247; labExpId=LID45899,LID45900; bioRep=087N,088N; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=gtf; md5sum=77f519fc5632ec4736666c977278410f; size=1.9M; replicate=3,4; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-03-16; dateUnrestricted=2012-05-14; subId=6059; geoSampleAccession=GSM981247; labExpId=LID45899,LID45900; bioRep=087N,088N; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549NucleusPapJunctions; type=bedRnaElements; md5sum=cd641d2f0019ed1972b6eba6bf37ba27; size=19M; replicate=3,4; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapMinusRep3.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-18; dateUnrestricted=2012-05-14; subId=5788; geoSampleAccession=GSM981247; labExpId=LID45899; bioRep=087N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549NucleusPapMinusRep3; type=bigWig; md5sum=23f311ee241bc3c7cd6b3770672ae946; size=232M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapMinusRep4.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5763; geoSampleAccession=GSM981247; labExpId=LID45900; bioRep=088N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549NucleusPapMinusRep4; type=bigWig; md5sum=5bb61d77cdff71f7de2e2fabf6fd4b0e; size=193M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapPlusRep3.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-18; dateUnrestricted=2012-05-14; subId=5788; geoSampleAccession=GSM981247; labExpId=LID45899; bioRep=087N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549NucleusPapPlusRep3; type=bigWig; md5sum=7dcd6fd38939dca5b5cdf26bc4734333; size=240M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapPlusRep4.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5763; geoSampleAccession=GSM981247; labExpId=LID45900; bioRep=088N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqA549NucleusPapPlusRep4; type=bigWig; md5sum=206d8010e2d43178b4703c67234e5f89; size=199M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapProtocolRep3.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-04-27; dateUnrestricted=2012-05-14; subId=6900; geoSampleAccession=GSM981247; labExpId=LID45899; bioRep=087N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=pdf; md5sum=1e96894421e634223df6f1ab9b2ce0fa; size=425K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapProtocolRep4.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=4; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-04-27; dateUnrestricted=2012-05-14; subId=6872; geoSampleAccession=GSM981247; labExpId=LID45900; bioRep=088N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=pdf; md5sum=b21d1bbbfdcfc1d0a5b535f9a10901a1; size=409K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapSpikeinsRep3.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=3; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-18; dateUnrestricted=2012-05-14; subId=5788; geoSampleAccession=GSM981247; labExpId=LID45899; bioRep=087N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=spikeins; md5sum=13a3cf78259cccfa84111948a3625e0f; size=395M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapSpikeinsRep4.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=A549; localization=nucleus; rnaExtract=longPolyA; readType=2x101D; replicate=4; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002625; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5763; geoSampleAccession=GSM981247; labExpId=LID45900; bioRep=088N; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=spikeins; md5sum=bb34dd305b8c9ff58f9f71afa20c9318; size=363M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqA549NucleusPapTranscriptDeNovo.gtf.gz seqPlatform=Illumina_HiSeq_2000; composite=wgEncodeCshlLongRnaSeq; readType=2x101D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-07-16; dataVersion=ENCODE Jul 2012 Freeze; labProtocolId=087N+,088N+; md5sum=0d34c03ead29234081628230ee7d2c1b; dateUnrestricted=2013-04-16; size=4.1M; dccAccession=wgEncodeEH002625; replicate=3,4; 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size=5.1M; replicate=3,4; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2010-10-25; dateUnrestricted=2011-07-25; subId=2707; geoSampleAccession=GSM765396; labExpId=LID9001; bioRep=017WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep1; type=bam; md5sum=bf874b47b46a49e9408b66dd0f8784d5; size=7.6G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2010-10-25; dateUnrestricted=2011-07-25; subId=2707; geoSampleAccession=GSM765396; labExpId=LID9001; bioRep=017WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep1; type=bai; md5sum=0694486e4a024908c72e8fc2c173b328; size=6.6M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep2.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3127; geoSampleAccession=GSM765396; labExpId=LID9002; bioRep=018WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep2; type=bam; md5sum=b2d49064bf6100d51ba8383ef40de2e2; size=7.8G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3127; geoSampleAccession=GSM765396; labExpId=LID9002; bioRep=018WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaAlnRep2; type=bai; md5sum=b3f52dd205053226aa8de5804274f81c; size=6.4M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaFastqRd1Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2010-10-25; dateUnrestricted=2011-07-25; subId=2707; geoSampleAccession=GSM765396; labExpId=LID9001; bioRep=017WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=02b8369e5831a95e4a308cab11e8b7b2; size=5.0G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaFastqRd1Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3127; geoSampleAccession=GSM765396; labExpId=LID9002; bioRep=018WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=cd87b6035f0f3e0957556c998f20995e; size=5.3G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2010-10-25; dateUnrestricted=2011-07-25; subId=2707; geoSampleAccession=GSM765396; labExpId=LID9001; bioRep=017WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=b5ec89ce6f04fb74fbcf5a76b6b76b6e; size=5.1G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaFastqRd2Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3127; geoSampleAccession=GSM765396; labExpId=LID9002; bioRep=018WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=59774fe2d55049012367aa734ffade4c; size=5.5G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaMinusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2010-10-25; dateUnrestricted=2011-07-25; subId=2707; geoSampleAccession=GSM765396; labExpId=LID9001; bioRep=017WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaMinusRawSigRep1; type=bigWig; md5sum=f8c0e13d372dfdcd794ace4e67de0995; size=778M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaMinusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3127; geoSampleAccession=GSM765396; labExpId=LID9002; bioRep=018WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaMinusRawSigRep2; type=bigWig; md5sum=9616613f0f2e7d06199d8be50c40e62a; size=151M; 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dataType=RnaSeq; view=PlusSignal; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3127; geoSampleAccession=GSM765396; labExpId=LID9002; bioRep=018WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaPlusRawSigRep2; type=bigWig; md5sum=4794e5b1f475d044fb924cb6df9523c7; size=154M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3603; geoSampleAccession=GSM765396; labExpId=LID9001,LID9002; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellPamContigs; type=bedRnaElements; md5sum=52dd695dafe22c5d71ae151577a229c6; size=15M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamExonsDeNovo.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsDeNovo; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2012-05-30; dateUnrestricted=2013-03-02; subId=6946; geoSampleAccession=GSM765396; labExpId=LID9001,LID9002; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=ef20a24e3ddd77f66a32ee0be595da22; size=9.2M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamExonsGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4558; geoSampleAccession=GSM765396; labExpId=LID9001,LID9002; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=d7cea3e64ccea65613a07ee807a5cd1a; size=19M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamGeneDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3603; geoSampleAccession=GSM765396; labExpId=LID9001,LID9002; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=05ce37190de4ade2bb718a809848070d; size=2.7M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamGeneDeNovoV2.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7452; geoSampleAccession=GSM765396; labExpId=LID9001,LID9002; bioRep=017WC,018WC; labProtocolId=017WC-,018WC-; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=6d235490ffb5e82a80a6332356b9411e; size=4.2M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamGeneGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV7; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4558; geoSampleAccession=GSM765396; labExpId=LID9001,LID9002; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=b6ce9d2b72167bf78d675094362ca2a9; size=2.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3603; geoSampleAccession=GSM765396; labExpId=LID9001,LID9002; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellPamJunctions; type=bedRnaElements; md5sum=0e905d97381fd9400f2ee5dbe487be4a; size=5.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamSpikeinsRep1.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4208; geoSampleAccession=GSM765396; labExpId=LID9001; bioRep=017WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=2d45677fe2f2783339443986552414a3; size=446M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4205; geoSampleAccession=GSM765396; labExpId=LID9002; bioRep=018WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=d687a3c37a718e4f684f6d52f32feebb; size=614M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamTranscriptDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3603; geoSampleAccession=GSM765396; labExpId=LID9001,LID9002; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=fa96a5383f0e3abaffd952f98cca9c7a; size=15M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamTranscriptDeNovoV2.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7452; geoSampleAccession=GSM765396; labExpId=LID9001,LID9002; bioRep=017WC,018WC; labProtocolId=017WC-,018WC-; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=0c9adf8c564f18667427c1f8be31d855; size=4.6M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPamTranscriptGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV7; cell=AG04450; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000179; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4558; geoSampleAccession=GSM765396; labExpId=LID9001,LID9002; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellPamTranscriptGencV7; type=gtf; md5sum=fab19638c2c43fd5995f23fbfce8e076; size=4.8M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2345; geoSampleAccession=GSM758561; labExpId=LID8965; bioRep=017WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellPapAlnRep1; type=bam; md5sum=b04b44097cc0d85871b2b85d16c0e726; size=13G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; 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geoSampleAccession=GSM758561; labExpId=LID8966; bioRep=018WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellPapAlnRep2; type=bam; md5sum=0769d29627ad2d59745d7a3f7934097b; size=13G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2406; geoSampleAccession=GSM758561; labExpId=LID8966; bioRep=018WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellPapAlnRep2; type=bai; md5sum=856fd7103cfc96569749d6ed0a9e6d84; size=7.0M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3604; geoSampleAccession=GSM758561; labExpId=LID8965,LID8966; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellPapContigs; type=bedRnaElements; md5sum=07e87488e7af8e706e8f19fe3eb8d2d4; size=13M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapExonsDeNovo.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsDeNovo; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2012-05-30; dateUnrestricted=2013-03-02; subId=6942; geoSampleAccession=GSM758561; labExpId=LID8965,LID8966; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=81e91f0512b63ee1d5753d8e63780547; size=6.6M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapExonsGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4554; geoSampleAccession=GSM758561; labExpId=LID8965,LID8966; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=4536d749f7d1629171d84f4fb64b5392; size=19M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapFastqRd1Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2345; geoSampleAccession=GSM758561; labExpId=LID8965; bioRep=017WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=29994ee3818ce71139b382afb3ef3874; size=7.9G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapFastqRd1Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2406; geoSampleAccession=GSM758561; labExpId=LID8966; bioRep=018WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=b4ad4b1f1690753d16d63518db9f6215; size=7.8G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2345; geoSampleAccession=GSM758561; labExpId=LID8965; bioRep=017WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=f29631a0dc083bc334a12bad5b629a86; size=7.9G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapFastqRd2Rep2.fastq.gz project=wgEncode; 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bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=947f5241f2d6d86dd00aa975be5f1035; size=1.2M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapGeneDeNovoV2.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7447; geoSampleAccession=GSM758561; labExpId=LID8965,LID8966; bioRep=017WC,018WC; labProtocolId=017WC+,018WC+; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=0556511edae949eb2bbe365ebbade29f; size=1.2M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapGeneGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV7; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4554; geoSampleAccession=GSM758561; labExpId=LID8965,LID8966; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=2041388e7e32be3ba5225d5ca1fb6c98; size=2.1M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3604; 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size=573M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapMinusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2406; geoSampleAccession=GSM758561; labExpId=LID8966; bioRep=018WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellPapMinusRawSigRep2; type=bigWig; md5sum=330b15afad4afaab080e0b5bbd73452d; size=535M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapPlusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2345; geoSampleAccession=GSM758561; labExpId=LID8965; bioRep=017WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellPapPlusRawSigRep1; type=bigWig; md5sum=63b34dfd670b697a0c2f3d0bfbf9dc05; size=588M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapPlusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2406; geoSampleAccession=GSM758561; 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dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7447; geoSampleAccession=GSM758561; labExpId=LID8965,LID8966; bioRep=017WC,018WC; labProtocolId=017WC+,018WC+; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=d822bf24729fc5034e6b6f7150b315d7; size=1.6M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqAg04450CellPapTranscriptGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV7; cell=AG04450; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000144; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4554; geoSampleAccession=GSM758561; labExpId=LID8965,LID8966; bioRep=017WC,018WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqAg04450CellPapTranscriptGencV7; type=gtf; md5sum=aacf107c3de4dee8a9bf9681668b0e9b; size=5.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellLongnonpolyaAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=BJ; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000185; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3128; geoSampleAccession=GSM767855; labExpId=LID9007; bioRep=037WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqBjCellLongnonpolyaAlnRep1; type=bam; md5sum=5ff8fd7689442e2d3e0e84bfd8ebcbb2; size=6.8G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellLongnonpolyaAlnRep1.bam.bai project=wgEncode; grant=Gingeras; 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labExpId=LID9008; bioRep=038WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=85febd523eeeefbca022f94399bfcf4a; size=4.5G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellLongnonpolyaFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=BJ; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000185; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3128; geoSampleAccession=GSM767855; labExpId=LID9007; bioRep=037WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=64e9fd52b9881acbbfa5bad5ef2f4dfe; size=5.1G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellLongnonpolyaFastqRd2Rep2.fastq.gz project=wgEncode; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=BJ; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000185; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3128; geoSampleAccession=GSM767855; labExpId=LID9007; bioRep=037WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqBjCellLongnonpolyaPlusRawSigRep1; type=bigWig; md5sum=f00c37ab459ca81c53191b799b5b3e1e; size=141M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellLongnonpolyaPlusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=BJ; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000185; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3129; geoSampleAccession=GSM767855; labExpId=LID9008; bioRep=038WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqBjCellLongnonpolyaPlusRawSigRep2; type=bigWig; md5sum=4e6f9165bb3a6059b621c6cd6c16ed2c; size=140M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPamContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=BJ; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000185; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3605; geoSampleAccession=GSM767855; labExpId=LID9007,LID9008; bioRep=037WC,038WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqBjCellPamContigs; type=bedRnaElements; md5sum=3fc283e272af02cd4eff99121b7a45df; size=15M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPamExonsDeNovo.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsDeNovo; cell=BJ; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000185; dateSubmitted=2012-05-30; dateUnrestricted=2013-03-02; subId=6965; geoSampleAccession=GSM767855; labExpId=LID9007,LID9008; bioRep=037WC,038WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=0c6661593a66cff9e41f0893a13278c2; size=9.4M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPamExonsGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=BJ; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000185; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4581; geoSampleAccession=GSM767855; labExpId=LID9007,LID9008; bioRep=037WC,038WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=abd01477933de79eedd5abaf5402be6e; size=18M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPamGeneDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=BJ; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000185; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3605; geoSampleAccession=GSM767855; labExpId=LID9007,LID9008; bioRep=037WC,038WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=2f246848e185a8ceda8917b9124f1bd1; size=2.7M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPamGeneDeNovoV2.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=BJ; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000185; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7472; geoSampleAccession=GSM767855; labExpId=LID9007,LID9008; bioRep=037WC,038WC; labProtocolId=037WC-,038WC-; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=2657ad4d638513eb3fcff050f19d8a55; size=4.6M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPamGeneGencV7.gtf.gz project=wgEncode; 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spikeInPool=Nist14; type=spikeins; md5sum=262e142bd4fdb035bca97222f731be92; size=595M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPamSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=BJ; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000185; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4254; geoSampleAccession=GSM767855; labExpId=LID9008; bioRep=038WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=c5c63068bc436685441852dab8fafa07; size=590M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPamTranscriptDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; 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organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2456; geoSampleAccession=GSM758562; labExpId=LID8969; bioRep=037WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqBjCellPapAlnRep1; type=bam; md5sum=aca7563b75059b34dbde330163a7f93c; size=11G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=BJ; localization=cell; 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type=bam; md5sum=0465277e9bc56886f737aa4141bfcf01; size=11G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2010-10-01; dateUnrestricted=2011-07-01; subId=2477; geoSampleAccession=GSM758562; labExpId=LID8970; bioRep=038WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqBjCellPapAlnRep2; type=bai; md5sum=bb7414e2a4e820b2d88ed7bf9edc484b; size=6.3M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3606; geoSampleAccession=GSM758562; labExpId=LID8969,LID8970; bioRep=037WC,038WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqBjCellPapContigs; type=bedRnaElements; md5sum=c65a5db1991f1a934fab425f74dd907e; size=11M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapExonsDeNovo.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsDeNovo; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2012-05-30; dateUnrestricted=2013-03-02; subId=7004; geoSampleAccession=GSM758562; 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bioRep=038WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=a246dc38a67aa16504518bd7cc3ca502; size=6.9G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2456; geoSampleAccession=GSM758562; labExpId=LID8969; bioRep=037WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=fc506fb9a06b7807adf2e05fccbf2586; size=6.8G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapFastqRd2Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2010-10-01; dateUnrestricted=2011-07-01; subId=2477; geoSampleAccession=GSM758562; labExpId=LID8970; bioRep=038WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=3d83787e240d7295206e264f42526363; size=6.9G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapGeneDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3606; geoSampleAccession=GSM758562; labExpId=LID8969,LID8970; bioRep=037WC,038WC; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV7; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4576; geoSampleAccession=GSM758562; labExpId=LID8969,LID8970; bioRep=037WC,038WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=9f5fa21db8af5c3faed1851322570a26; size=2.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3606; geoSampleAccession=GSM758562; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2010-10-01; dateUnrestricted=2011-07-01; subId=2477; geoSampleAccession=GSM758562; labExpId=LID8970; bioRep=038WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqBjCellPapMinusRawSigRep2; type=bigWig; md5sum=6656e0683ee649fa35aa7f091115b572; size=408M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapPlusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2456; geoSampleAccession=GSM758562; labExpId=LID8969; bioRep=037WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqBjCellPapPlusRawSigRep1; type=bigWig; md5sum=7b2302db1d7d19d35635451146694f5c; size=519M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapPlusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2010-10-01; dateUnrestricted=2011-07-01; subId=2477; geoSampleAccession=GSM758562; labExpId=LID8970; bioRep=038WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqBjCellPapPlusRawSigRep2; type=bigWig; md5sum=456c3e8da305b3319d6bec9432bbcef1; size=425M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapProtocolRep1.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM758562; labExpId=LID8969; bioRep=037WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=112ab88c13437f1455967a87e04d1c0b; size=608K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapProtocolRep2.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM758562; labExpId=LID8970; bioRep=038WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=bc4a45f826f37be785e954468543a5af; size=605K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapSpikeinsRep1.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4251; geoSampleAccession=GSM758562; labExpId=LID8969; bioRep=037WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=65232b0445896ad549aeff3c22aac6d9; size=176M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4212; geoSampleAccession=GSM758562; labExpId=LID8970; bioRep=038WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=3ac499be0dc2dd45e2345d3c454fce9d; size=163M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapTranscriptDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3606; geoSampleAccession=GSM758562; labExpId=LID8969,LID8970; bioRep=037WC,038WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=be9c7f7c8aa4293a94bc062a0860b350; size=14M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapTranscriptDeNovoV2.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7469; geoSampleAccession=GSM758562; labExpId=LID8969,LID8970; bioRep=037WC,038WC; labProtocolId=037WC+,038WC+; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=23597284c8d0ce000580d9171a60faea; size=1.4M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqBjCellPapTranscriptGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV7; cell=BJ; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000145; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4576; geoSampleAccession=GSM758562; labExpId=LID8969,LID8970; bioRep=037WC,038WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqBjCellPapTranscriptGencV7; type=gtf; md5sum=1e5405d9b0fb8d28683f91d6067e387d; size=5.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-18; dateUnrestricted=2012-11-17; subId=5793; labExpId=LID44659; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPamAlnRep1; type=bam; md5sum=57ceab9c0d4fa8a880bbc3156e5cd095; size=6.9G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-18; dateUnrestricted=2012-11-17; subId=5793; labExpId=LID44659; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPamAlnRep1; type=bai; md5sum=bd09f50aff97d2c8a6c301d05768dbe2; size=7.5M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamAlnRep2.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-16; dateUnrestricted=2012-11-16; subId=5761; labExpId=LID44660; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPamAlnRep2; type=bam; md5sum=b8e87e39f989a313fd97739dc00863df; size=4.1G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-16; dateUnrestricted=2012-11-16; subId=5761; labExpId=LID44660; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPamAlnRep2; type=bai; md5sum=5961d2b1bfa853265052d7469100ece5; size=6.3M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; donorId=RO01794,RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-03-16; dateUnrestricted=2012-12-16; subId=6026; geoSampleAccession=GSM981254; labExpId=LID44659,LID44660; bioRep=041WC,042WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPamContigs; type=bedRnaElements; md5sum=bc99e5aa82cdcffd5afe5451beeedc70; size=16M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamExonsDeNovo.gff.gz seqPlatform=Illumina_GA2x; composite=wgEncodeCshlLongRnaSeq; readType=2x76D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-05-30; dataVersion=ENCODE Jul 2012 Freeze; md5sum=4a42b4c7c0e1d934579829b837093d00; dateUnrestricted=2013-03-02; size=12M; dccAccession=wgEncodeEH002666; replicate=1,2; view=ExonsDeNovo; labExpId=LID44659,LID44660; subId=7015; cell=CD20+; rnaExtract=longNonPolyA; spikeInPool=Nist14; geoSampleAccession=GSM981254; donorId=RO01794,RO01778; bioRep=041WC,042WC; lab=CSHL; type=gff; localization=cell; labVersion=iIDR; grant=Gingeras; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamExonsGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV10; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; donorId=RO01794,RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-03-27; dateUnrestricted=2012-12-27; subId=6372; geoSampleAccession=GSM981254; labExpId=LID44659,LID44660; bioRep=041WC,042WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=184b29dc098e48f07b8415b64b45bf23; size=20M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamFastqRd1Rep1.fastq.tgz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-18; dateUnrestricted=2012-11-17; subId=5793; geoSampleAccession=GSM981254; labExpId=LID44659; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=4d35ecfebc483186c4dc56916332eecd; size=4.9G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamFastqRd1Rep2.fastq.tgz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-16; dateUnrestricted=2012-11-16; subId=5761; geoSampleAccession=GSM981254; labExpId=LID44660; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=90dbd6272a2bbcd4ebe3733a2dac10e9; size=4.1G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamFastqRd2Rep1.fastq.tgz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-18; dateUnrestricted=2012-11-17; subId=5793; geoSampleAccession=GSM981254; labExpId=LID44659; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=4b8896b4a027c8285ceeed41695bf39f; size=5.5G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamFastqRd2Rep2.fastq.tgz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-16; dateUnrestricted=2012-11-16; subId=5761; geoSampleAccession=GSM981254; labExpId=LID44660; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=f0b9a3a29aa3960d5d4ea83fff11f081; size=4.7G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamGeneDeNovo.gff.gz seqPlatform=Illumina_GA2x; composite=wgEncodeCshlLongRnaSeq; readType=2x76D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-07-16; dataVersion=ENCODE Jul 2012 Freeze; labProtocolId=041WC-,042WC-; md5sum=3552416c90d24076f7a351af28c0559c; dateUnrestricted=2013-04-16; size=5.0M; dccAccession=wgEncodeEH002666; replicate=1,2; view=GeneDeNovo; labExpId=LID44659,LID44660; subId=7426; cell=CD20+; rnaExtract=longNonPolyA; spikeInPool=Nist14; geoSampleAccession=GSM981254; donorId=RO01794,RO01778; bioRep=041WC,042WC; lab=CSHL; type=gff; localization=cell; labVersion=iIDR; grant=Gingeras; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamGeneGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV10; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; donorId=RO01794,RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-03-27; dateUnrestricted=2012-12-27; subId=6372; geoSampleAccession=GSM981254; labExpId=LID44659,LID44660; bioRep=041WC,042WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=e47735f977bbf4ee163df95e3a16cde2; size=1.9M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; donorId=RO01794,RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-03-16; dateUnrestricted=2012-12-16; subId=6064; geoSampleAccession=GSM981254; labExpId=LID44659,LID44660; bioRep=041WC,042WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPamJunctions; type=bedRnaElements; md5sum=c72663e6f8bd534b999746c628400730; size=7.3M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamMinusRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-18; dateUnrestricted=2012-11-17; subId=5793; geoSampleAccession=GSM981254; labExpId=LID44659; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPamMinusRep1; type=bigWig; md5sum=61176fc04382b397dfc4c2f298c9cbf7; size=220M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamMinusRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-16; dateUnrestricted=2012-11-16; subId=5761; geoSampleAccession=GSM981254; labExpId=LID44660; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPamMinusRep2; type=bigWig; md5sum=56caa1915f2a4202dd2571f5dc252549; size=86M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamPlusRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-18; dateUnrestricted=2012-11-17; subId=5793; geoSampleAccession=GSM981254; labExpId=LID44659; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPamPlusRep1; type=bigWig; md5sum=343d6f74fd36a167b569b33d09aac86e; size=227M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamPlusRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-16; dateUnrestricted=2012-11-16; subId=5761; geoSampleAccession=GSM981254; labExpId=LID44660; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPamPlusRep2; type=bigWig; md5sum=ae748c912504066218cc2a2f536636a8; size=88M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamProtocolRep1.pdf project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-18; dateUnrestricted=2012-11-17; labExpId=LID44659; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=41e157dbc38488404d837a916e54298a; size=608K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamProtocolRep2.pdf project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-16; dateUnrestricted=2012-11-16; labExpId=LID44660; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=777c0b55c3b5fe894bfe955189482ae4; size=603K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamSpikeinsRep1.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-18; dateUnrestricted=2012-11-17; subId=5793; geoSampleAccession=GSM981254; labExpId=LID44659; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=bde8aec65c078e7e291fc487b7fa1d6a; size=255M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-02-16; dateUnrestricted=2012-11-16; subId=5761; geoSampleAccession=GSM981254; labExpId=LID44660; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=15b3a73ca4c7818e382b58a9608b6afa; size=463M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamTranscriptDeNovo.gtf.gz seqPlatform=Illumina_GA2x; composite=wgEncodeCshlLongRnaSeq; readType=2x76D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-07-16; dataVersion=ENCODE Jul 2012 Freeze; labProtocolId=041WC-,042WC-; md5sum=392d6e495ab0afbf24450c9bfc52ba8a; dateUnrestricted=2013-04-16; size=5.6M; dccAccession=wgEncodeEH002666; replicate=1,2; view=TranscriptDeNovo; labExpId=LID44659,LID44660; subId=7426; cell=CD20+; rnaExtract=longNonPolyA; spikeInPool=Nist14; geoSampleAccession=GSM981254; donorId=RO01794,RO01778; bioRep=041WC,042WC; lab=CSHL; type=gtf; localization=cell; labVersion=iIDR; grant=Gingeras; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPamTranscriptGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV10; cell=CD20+; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; donorId=RO01794,RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002666; dateSubmitted=2012-03-27; dateUnrestricted=2012-12-27; subId=6372; geoSampleAccession=GSM981254; labExpId=LID44659,LID44660; bioRep=041WC,042WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPamTranscriptGencV10; type=gtf; md5sum=b07c5ae4a050062c3792c030b9b76e61; size=4.9M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5758; labExpId=LID44498; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPapAlnRep1; type=bam; md5sum=3b681611f7632734969a6775211432c7; size=7.2G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5758; labExpId=LID44498; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPapAlnRep1; type=bai; md5sum=30a7d4d686184adcefdc2397e9c1fb27; size=7.0M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapAlnRep2.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-17; dateUnrestricted=2012-05-14; subId=5772; labExpId=LID44499; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPapAlnRep2; type=bam; md5sum=72967f4fbe72f23f6071f3cbe66773d4; size=8.6G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-17; dateUnrestricted=2012-05-14; subId=5772; labExpId=LID44499; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPapAlnRep2; type=bai; md5sum=e81bb5c21d6d25de0a046611e09677b2; size=6.9M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; donorId=RO01794,RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-03-16; dateUnrestricted=2012-05-14; subId=6039; geoSampleAccession=GSM981256; labExpId=LID44498,LID44499; bioRep=041WC,042WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPapContigs; type=bedRnaElements; md5sum=2838b458d18c04699d8ec1bcaeea5a11; size=15M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapExonsDeNovo.gff.gz seqPlatform=Illumina_GA2x; composite=wgEncodeCshlLongRnaSeq; readType=2x76D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-05-30; dataVersion=ENCODE Jul 2012 Freeze; md5sum=3e55a399204e6662cb3c4905b60d0048; dateUnrestricted=2013-03-02; size=14M; dccAccession=wgEncodeEH002665; replicate=1,2; view=ExonsDeNovo; labExpId=LID44498,LID44499; subId=7014; cell=CD20+; rnaExtract=longPolyA; spikeInPool=Nist14; geoSampleAccession=GSM981256; donorId=RO01794,RO01778; bioRep=041WC,042WC; lab=CSHL; type=gff; localization=cell; labVersion=iIDR; grant=Gingeras; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapExonsGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV10; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; donorId=RO01794,RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-03-27; dateUnrestricted=2012-05-14; subId=6385; geoSampleAccession=GSM981256; labExpId=LID44498,LID44499; bioRep=041WC,042WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=7f026f8674978854d2fb3ee0769739c8; size=20M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapFastqRd1Rep1.fastq.tgz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5758; geoSampleAccession=GSM981256; labExpId=LID44498; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=f451a6b7054d0c260b17fe79166aeb0b; size=4.7G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapFastqRd1Rep2.fastq.tgz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-17; dateUnrestricted=2012-05-14; subId=5772; geoSampleAccession=GSM981256; labExpId=LID44499; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=2f25f2d0ebeacbaa0a9f77c7317bf28a; size=5.8G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapFastqRd2Rep1.fastq.tgz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5758; geoSampleAccession=GSM981256; labExpId=LID44498; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=125a85aa10637006ccdc5ff5fd74abc0; size=4.9G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapFastqRd2Rep2.fastq.tgz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-17; dateUnrestricted=2012-05-14; subId=5772; geoSampleAccession=GSM981256; labExpId=LID44499; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=a2a9952c9b3b439ee233c23a188922be; size=6.0G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapGeneDeNovo.gff.gz seqPlatform=Illumina_GA2x; composite=wgEncodeCshlLongRnaSeq; readType=2x76D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-07-16; dataVersion=ENCODE Jul 2012 Freeze; labProtocolId=041WC+,042WC+; md5sum=a5f107d466a4ab73809acd77ce34d238; dateUnrestricted=2013-04-16; size=2.0M; dccAccession=wgEncodeEH002665; replicate=1,2; view=GeneDeNovo; labExpId=LID44498,LID44499; subId=7424; cell=CD20+; rnaExtract=longPolyA; spikeInPool=Nist14; geoSampleAccession=GSM981256; donorId=RO01794,RO01778; bioRep=041WC,042WC; lab=CSHL; type=gff; localization=cell; labVersion=iIDR; grant=Gingeras; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapGeneGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV10; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; donorId=RO01794,RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-03-27; dateUnrestricted=2012-05-14; subId=6385; geoSampleAccession=GSM981256; labExpId=LID44498,LID44499; bioRep=041WC,042WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=7a33ca2fdb0a4a71d7a9974fad8e7e6f; size=1.9M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; donorId=RO01794,RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-03-16; dateUnrestricted=2012-05-14; subId=6067; geoSampleAccession=GSM981256; labExpId=LID44498,LID44499; bioRep=041WC,042WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPapJunctions; type=bedRnaElements; md5sum=802e4e7a6be6311d7f82984b4ab3d4b3; size=8.9M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapMinusRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5758; geoSampleAccession=GSM981256; labExpId=LID44498; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPapMinusRep1; type=bigWig; md5sum=bfaae9c78dda581888d330286bd3d2d4; size=168M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapMinusRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-17; dateUnrestricted=2012-05-14; subId=5772; geoSampleAccession=GSM981256; labExpId=LID44499; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPapMinusRep2; type=bigWig; md5sum=57c64337169fd14acdfe1770867255ae; size=153M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapPlusRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-16; dateUnrestricted=2012-05-14; subId=5758; geoSampleAccession=GSM981256; labExpId=LID44498; bioRep=041WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPapPlusRep1; type=bigWig; md5sum=69b0ad10ac592a52edfb149eb88d1a57; size=172M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapPlusRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-17; dateUnrestricted=2012-05-14; subId=5772; geoSampleAccession=GSM981256; labExpId=LID44499; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd20CellPapPlusRep2; type=bigWig; md5sum=c49c2b194cfc2335ddd7436ee2b0a53d; size=157M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapProtocolRep1.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; donorId=RO01794; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-07-26; dateUnrestricted=2013-04-26; subId=7673; geoSampleAccession=GSM981256; labExpId=LID44498; bioRep=041WC; labProtocolId=041WC+; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=4a98e26df739df4cb5b67f0bfdc7a043; size=375K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapProtocolRep2.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=CD20+; localization=cell; 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type=spikeins; md5sum=9a80f0df2462e175aa92835de7a8a4bd; size=514M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; donorId=RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-02-17; dateUnrestricted=2012-05-14; subId=5772; geoSampleAccession=GSM981256; labExpId=LID44499; bioRep=042WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=e849a639c747a4bf7ef25251147923cb; size=762M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapTranscriptDeNovo.gtf.gz seqPlatform=Illumina_GA2x; composite=wgEncodeCshlLongRnaSeq; readType=2x76D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-07-16; dataVersion=ENCODE Jul 2012 Freeze; labProtocolId=041WC+,042WC+; md5sum=d7736bdbd31e84fa7d731365b45c0d88; dateUnrestricted=2013-04-16; size=2.6M; dccAccession=wgEncodeEH002665; replicate=1,2; view=TranscriptDeNovo; labExpId=LID44498,LID44499; subId=7424; cell=CD20+; rnaExtract=longPolyA; spikeInPool=Nist14; geoSampleAccession=GSM981256; donorId=RO01794,RO01778; bioRep=041WC,042WC; lab=CSHL; type=gtf; localization=cell; labVersion=iIDR; grant=Gingeras; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd20CellPapTranscriptGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV10; cell=CD20+; localization=cell; rnaExtract=longPolyA; readType=2x76D; donorId=RO01794,RO01778; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002665; dateSubmitted=2012-03-27; dateUnrestricted=2012-05-14; 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geoSampleAccession=GSM981257; labExpId=LID45901; bioRep=043WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=gff; md5sum=126155f3083472037d83338221abab63; size=12M; replicate=1; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalExonsGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV10; cell=CD34+_Mobilized; localization=cell; rnaExtract=total; readType=2x101D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002670; dateSubmitted=2012-03-27; dateUnrestricted=2012-12-27; subId=6380; geoSampleAccession=GSM981257; labExpId=LID45901; bioRep=043WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=gtf; md5sum=35b5ecc88632e75a4ea32c8a79e5452d; size=18M; replicate=1; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalFastqRd1Rep1.fastq.gz project=wgEncode; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV10; cell=CD34+_Mobilized; localization=cell; rnaExtract=total; readType=2x101D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002670; dateSubmitted=2012-03-27; dateUnrestricted=2012-12-27; subId=6380; geoSampleAccession=GSM981257; labExpId=LID45901; bioRep=043WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=gtf; md5sum=0d22915f4d51d5c27ebb75051ef9e21b; size=1.7M; replicate=1; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=CD34+_Mobilized; localization=cell; rnaExtract=total; readType=2x101D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002670; dateSubmitted=2012-03-27; dateUnrestricted=2012-12-27; subId=6399; geoSampleAccession=GSM981257; labExpId=LID45901; bioRep=043WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalJunctions; type=bedRnaElements; md5sum=8158d1f2a930284e0ae0945632830871; size=16M; replicate=1; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalMinusRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=CD34+_Mobilized; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002670; dateSubmitted=2012-02-17; dateUnrestricted=2012-11-17; subId=5780; geoSampleAccession=GSM981257; labExpId=LID45901; bioRep=043WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalMinusRep1; type=bigWig; md5sum=55d6c7400492af62dc93f5ededae66c4; size=443M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalPlusRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=CD34+_Mobilized; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002670; dateSubmitted=2012-02-17; dateUnrestricted=2012-11-17; subId=5780; geoSampleAccession=GSM981257; labExpId=LID45901; bioRep=043WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalPlusRep1; type=bigWig; md5sum=50e12cf07491d82d01448573a8932505; size=460M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalProtocolRep1.pdf.gz project=wgEncode; 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subId=5780; geoSampleAccession=GSM981257; labExpId=LID45901; bioRep=043WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=spikeins; md5sum=8cde1c09f200a46b75bfe548e6411c45; size=424M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalTranscriptDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=CD34+_Mobilized; localization=cell; rnaExtract=total; readType=2x101D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002670; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7419; geoSampleAccession=GSM981257; labExpId=LID45901; bioRep=043WC; labProtocolId=043WCt; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; type=gtf; md5sum=bb8161e4293c663233dc38575547d1ec; size=5.3M; replicate=1; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalTranscriptGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV10; cell=CD34+_Mobilized; localization=cell; rnaExtract=total; readType=2x101D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002670; dateSubmitted=2012-03-27; dateUnrestricted=2012-12-27; subId=6380; geoSampleAccession=GSM981257; labExpId=LID45901; bioRep=043WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalTranscriptGencV10; type=gtf; md5sum=583b87178ef42ec0692e2274c4cd4ce2; size=4.4M; replicate=1; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000148; dateSubmitted=2011-01-11; dateUnrestricted=2011-10-11; subId=3230; geoSampleAccession=GSM758572; labExpId=LID8661; bioRep=003WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaAlnRep1; type=bam; md5sum=1a3f73a84e8cc76726202565cb9553ca; size=9.7G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000148; dateSubmitted=2011-01-11; dateUnrestricted=2011-10-11; subId=3230; geoSampleAccession=GSM758572; labExpId=LID8661; bioRep=003WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaAlnRep1; type=bai; md5sum=8b4c4066203931a016c4a6275b247c2b; 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geoSampleAccession=GSM758572; labExpId=LID8661; bioRep=003WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=6b980110a21e3ce32480c5c7c40db2e9; size=7.0G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaFastqRd1Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=GM12878; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000148; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2402; geoSampleAccession=GSM758572; labExpId=LID8662; bioRep=004WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=dc08ae29be2a96560582287fa734a700; size=6.8G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaFastqRd2Rep1.fastq.gz project=wgEncode; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000148; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2402; geoSampleAccession=GSM758572; labExpId=LID8662; bioRep=004WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaMinusRawSigRep2; type=bigWig; md5sum=adccefe27695169d299834f7feee9b42; size=971M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellLongnonpolyaPlusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000148; 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type=bigWig; md5sum=6d5d8e28815734d88750ee01e85621ab; size=1021M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPamContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=GM12878; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000148; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3611; geoSampleAccession=GSM758572; labExpId=LID8661,LID8662; bioRep=003WC,004WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CellPamContigs; type=bedRnaElements; md5sum=d68f85952a46021668eb3c251d349d37; size=19M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPamExonsDeNovo.gff.gz project=wgEncode; 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view=Protocol; cell=GM12878; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000148; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM758572; labExpId=LID8662; bioRep=004WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=468307162b5a7c51402d8521aa2f7811; size=438K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPamSpikeinsRep1.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=GM12878; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000148; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4298; geoSampleAccession=GSM758572; labExpId=LID8661; bioRep=003WC; seqPlatform=Illumina_GA2x; 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dataType=RnaSeq; view=TranscriptDeNovo; cell=GM12878; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000148; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3611; geoSampleAccession=GSM758572; labExpId=LID8661,LID8662; bioRep=003WC,004WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=d6b9e9c1aa150a3aaf7a10e7c3b3ac7c; size=27M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPamTranscriptDeNovoV2.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=GM12878; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000148; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; 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size=4.8M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2097; geoSampleAccession=GSM758559; labExpId=LID16629; bioRep=003WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CellPapAlnRep1; type=bam; md5sum=ef50cfac8b54beae2e40b510516dbfbe; size=13G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2097; geoSampleAccession=GSM758559; labExpId=LID16629; bioRep=003WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CellPapAlnRep1; type=bai; md5sum=daa9acb76bbb00b29f5a406fb8bd80c6; size=7.3M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapAlnRep2.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=2445; geoSampleAccession=GSM758559; labExpId=LID16630; 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replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=2445; geoSampleAccession=GSM758559; labExpId=LID16630; bioRep=004WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=2749ae678910489f1a7560c35b4ef79b; size=9.0G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2097; geoSampleAccession=GSM758559; labExpId=LID16629; bioRep=003WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=7ad2db3a9854a2e10ceabc3b09db7f65; size=8.1G; organism=human; 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dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3612; geoSampleAccession=GSM758559; labExpId=LID16629,LID16630; bioRep=003WC,004WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=a5b94a0922c374dabff468c903ded60b; size=2.1M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapGeneDeNovoV2.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7465; geoSampleAccession=GSM758559; labExpId=LID16629,LID16630; bioRep=003WC,004WC; labProtocolId=003WC+,004WC+; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3612; geoSampleAccession=GSM758559; labExpId=LID16629,LID16630; bioRep=003WC,004WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CellPapJunctions; type=bedRnaElements; md5sum=9f7e7cfa7e3ce4da05ddcde84f572d43; size=9.1M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapMinusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2097; geoSampleAccession=GSM758559; labExpId=LID16629; bioRep=003WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CellPapMinusRawSigRep1; type=bigWig; md5sum=4b2ec164f0172da8d2c2e31d1db78834; size=807M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapMinusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=2445; geoSampleAccession=GSM758559; labExpId=LID16630; bioRep=004WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CellPapMinusRawSigRep2; type=bigWig; md5sum=8ae303919ed45aac5bd48587ad8d92d2; size=826M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapPlusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2097; geoSampleAccession=GSM758559; labExpId=LID16629; bioRep=003WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CellPapPlusRawSigRep1; type=bigWig; md5sum=2edf2618c543cbc0e7fcf4cfac7404be; size=844M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapPlusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=2445; geoSampleAccession=GSM758559; labExpId=LID16630; bioRep=004WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CellPapPlusRawSigRep2; type=bigWig; md5sum=cdd45d6f623ee8e0c5df429c8b24b601; size=861M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapProtocolRep1.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM758559; labExpId=LID16629; bioRep=003WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=43418598be7729e08a4a3201d1d6baa6; size=1.4M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapProtocolRep2.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM758559; labExpId=LID16630; bioRep=004WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=1b9fbf29f0acfe3a6011b352b00acce3; size=1.4M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapSpikeinsRep1.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4260; geoSampleAccession=GSM758559; labExpId=LID16629; bioRep=003WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=d8c66cf0c13efadaf1451a5c95df6cdd; size=596M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4201; geoSampleAccession=GSM758559; labExpId=LID16630; bioRep=004WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=3e65f7905f148e7a30eeabe8602caa2d; size=380M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapTranscriptDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=GM12878; localization=cell; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000146; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3612; geoSampleAccession=GSM758559; labExpId=LID16629,LID16630; bioRep=003WC,004WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=96c6e06a3290c25ca4dcb878fb18bc99; size=16M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CellPapTranscriptDeNovoV2.gtf.gz project=wgEncode; 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dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2010-10-05; dateUnrestricted=2011-07-05; subId=1911; geoSampleAccession=GSM758560; labExpId=LID8467; bioRep=003C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CytosolPapAlnRep1; type=bam; md5sum=d6af952f8274ec254961f0396ac8c60d; size=13G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2010-10-05; dateUnrestricted=2011-07-05; subId=1911; geoSampleAccession=GSM758560; 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organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapExonsGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4553; geoSampleAccession=GSM758560; labExpId=LID8467,LID8468; bioRep=003C,004C; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=7b7ad3f06e434958e7e63612d0c52f30; size=19M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapFastqRd1Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2010-10-05; dateUnrestricted=2011-07-05; subId=1911; geoSampleAccession=GSM758560; labExpId=LID8467; bioRep=003C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=a1ae3657fe595fdf38f6b55381f8cad7; size=8.2G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapFastqRd1Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2441; geoSampleAccession=GSM758560; labExpId=LID8468; bioRep=004C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=b6b464edc8e5d6ce457547236801ff90; size=5.8G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2010-10-05; dateUnrestricted=2011-07-05; subId=1911; geoSampleAccession=GSM758560; labExpId=LID8467; bioRep=003C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=fa54c1dc9d0803e6c2b4888fd2a94453; size=8.5G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapFastqRd2Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2441; geoSampleAccession=GSM758560; labExpId=LID8468; bioRep=004C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=a87571f6b678ab016e2182247e1fa7c3; size=6.0G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapGeneDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3608; geoSampleAccession=GSM758560; labExpId=LID8467,LID8468; bioRep=003C,004C; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=08bd6127085b77f8c91f36515ed024cd; size=1.3M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapGeneDeNovoV2.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7448; geoSampleAccession=GSM758560; labExpId=LID8467,LID8468; bioRep=003C,004C; labProtocolId=003C+,004C+; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=aea173027ba9549476f0d68d7b699050; size=1.2M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapGeneGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV7; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4553; geoSampleAccession=GSM758560; labExpId=LID8467,LID8468; bioRep=003C,004C; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=a1f08997dd55699ccd91a216a9a8602d; size=2.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3608; geoSampleAccession=GSM758560; labExpId=LID8467,LID8468; bioRep=003C,004C; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CytosolPapJunctions; type=bedRnaElements; md5sum=7b90596871bd34ba878c4cb15aeb9e09; size=9.3M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapMinusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2010-10-05; dateUnrestricted=2011-07-05; subId=1911; geoSampleAccession=GSM758560; labExpId=LID8467; bioRep=003C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CytosolPapMinusRawSigRep1; type=bigWig; md5sum=49d31ed4be23c30264fdbbdcbc25f884; size=445M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapMinusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2441; geoSampleAccession=GSM758560; labExpId=LID8468; bioRep=004C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CytosolPapMinusRawSigRep2; type=bigWig; md5sum=1f90f73e1e748608ed25d4cba71800b2; size=425M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapPlusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2010-10-05; dateUnrestricted=2011-07-05; subId=1911; geoSampleAccession=GSM758560; labExpId=LID8467; bioRep=003C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CytosolPapPlusRawSigRep1; type=bigWig; md5sum=d1a4b6a52a61d2b38cecf77e30259fe9; size=457M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapPlusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2441; geoSampleAccession=GSM758560; labExpId=LID8468; bioRep=004C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CytosolPapPlusRawSigRep2; type=bigWig; md5sum=f100b30fde8819a023878d27bd4d7691; size=437M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapProtocolRep1.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM758560; labExpId=LID8467; bioRep=003C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=b14b590331262214899151fc8bcaf37d; size=954K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapProtocolRep2.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM758560; labExpId=LID8468; bioRep=004C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=bd7b69dff52cf717f77f8bf41c4a9094; size=960K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapSpikeinsRep1.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4276; geoSampleAccession=GSM758560; labExpId=LID8467; bioRep=003C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=bd305b2338a257d984d2a606ef821025; size=78M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4231; geoSampleAccession=GSM758560; labExpId=LID8468; bioRep=004C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=5c0aa569da3d31c0b46c31cce8683382; size=43M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapTranscriptDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3608; geoSampleAccession=GSM758560; labExpId=LID8467,LID8468; bioRep=003C,004C; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=e9f2c427cd77637479dea7863ad57be5; size=14M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapTranscriptDeNovoV2.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7448; geoSampleAccession=GSM758560; labExpId=LID8467,LID8468; bioRep=003C,004C; labProtocolId=003C+,004C+; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=ae6075ea0f0741467c1b698504d77962; size=1.6M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878CytosolPapTranscriptGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV7; cell=GM12878; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000147; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4553; geoSampleAccession=GSM758560; labExpId=LID8467,LID8468; bioRep=003C,004C; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878CytosolPapTranscriptGencV7; type=gtf; md5sum=5ab9dadaad4224e4e450cbc41c42bc87; size=5.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep3.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=3; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7192; labExpId=LID47963; bioRep=091NL; labProtocolId=091NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep3; type=bam; md5sum=7f65b29761b2ff70b68e2dc64f5ab397; size=32G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep3.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=3; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7192; labExpId=LID47963; bioRep=091NL; labProtocolId=091NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep3; type=bai; md5sum=88650ace2130a350869eb6e266f8821c; size=11M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep4.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=4; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-28; dateUnrestricted=2013-03-28; subId=7188; labExpId=LID47964; bioRep=092NL; labProtocolId=092NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep4; type=bam; md5sum=bf93db27957f49c9f3b56526b82b7cf4; size=28G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep4.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=4; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-28; dateUnrestricted=2013-03-28; subId=7188; labExpId=LID47964; bioRep=092NL; labProtocolId=092NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqGm12878NucleolusTotalAlnRep4; type=bai; md5sum=b526d5e31be34e68ebf2a5071aab3dfc; size=11M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-28; subId=7194; geoSampleAccession=GSM984605; labExpId=LID47963,LID47964; bioRep=091NL,092NL; labProtocolId=091NLt,092NLt; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqGm12878NucleolusTotalContigs; type=bedRnaElements; md5sum=c60dcc7cac52aef8f8482e04216a6ef9; size=21M; replicate=3,4; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalFastqRd1Rep3.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=3; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7192; geoSampleAccession=GSM984605; labExpId=LID47963; bioRep=091NL; labProtocolId=091NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=4449a8131c25557a8b635f6d3d267011; size=18G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalFastqRd1Rep4.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=4; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-28; dateUnrestricted=2013-03-28; subId=7188; geoSampleAccession=GSM984605; labExpId=LID47964; bioRep=092NL; labProtocolId=092NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=a450a51faa2dc8e6fb566554bd5be639; size=16G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalFastqRd2Rep3.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=3; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7192; geoSampleAccession=GSM984605; labExpId=LID47963; bioRep=091NL; labProtocolId=091NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=d7b811e42386fc8b39117335f073ad11; size=19G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalFastqRd2Rep4.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=4; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-28; dateUnrestricted=2013-03-28; subId=7188; geoSampleAccession=GSM984605; labExpId=LID47964; bioRep=092NL; labProtocolId=092NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=b207c0c3809671f4287b4a80fec732ac; size=16G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-28; subId=7196; geoSampleAccession=GSM984605; labExpId=LID47963,LID47964; bioRep=091NL,092NL; labProtocolId=091NLt,092NLt; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqGm12878NucleolusTotalJunctions; type=bedRnaElements; md5sum=c36f7037494b13ab5254e0b2a7fa951d; size=23M; replicate=3,4; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalMinusSignalRep3.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=3; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7192; geoSampleAccession=GSM984605; labExpId=LID47963; bioRep=091NL; labProtocolId=091NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqGm12878NucleolusTotalMinusSignalRep3; type=bigWig; md5sum=fa06154a5e203a38d380178c2ffbeb21; size=690M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalMinusSignalRep4.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=4; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-28; dateUnrestricted=2013-03-28; subId=7188; geoSampleAccession=GSM984605; labExpId=LID47964; bioRep=092NL; labProtocolId=092NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqGm12878NucleolusTotalMinusSignalRep4; type=bigWig; md5sum=4b19532f6d465d5414284137911459f6; size=631M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalPlusSignalRep3.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=3; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7192; geoSampleAccession=GSM984605; labExpId=LID47963; bioRep=091NL; labProtocolId=091NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqGm12878NucleolusTotalPlusSignalRep3; type=bigWig; md5sum=09a8c27daf1397450aed01e243205c9e; size=722M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalPlusSignalRep4.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=4; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-28; dateUnrestricted=2013-03-28; subId=7188; geoSampleAccession=GSM984605; labExpId=LID47964; bioRep=092NL; labProtocolId=092NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqGm12878NucleolusTotalPlusSignalRep4; type=bigWig; md5sum=a1bb7e17049640d96a2cbbfac24a5801; size=659M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalProtocolRep3.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=3; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-07-31; dateUnrestricted=2013-05-01; subId=7816; geoSampleAccession=GSM984605; labExpId=LID47963; bioRep=091NL; labProtocolId=091NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=pdf; md5sum=02bcebe8a0ce9b2a4e778510f09b0d56; size=293K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalProtocolRep4.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=4; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-07-31; dateUnrestricted=2013-05-01; subId=7815; geoSampleAccession=GSM984605; labExpId=LID47964; bioRep=092NL; labProtocolId=092NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=pdf; md5sum=eba3d27817a2efec3c26ad474c29ba1d; size=288K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalSpikeinsRep3.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=3; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7192; geoSampleAccession=GSM984605; labExpId=LID47963; bioRep=091NL; labProtocolId=091NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=spikeins; md5sum=4b0ae5c6267637a75467dd2b41679519; size=176M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleolusTotalSpikeinsRep4.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=GM12878; localization=nucleolus; rnaExtract=total; readType=2x101D; replicate=4; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH003034; dateSubmitted=2012-06-28; dateUnrestricted=2013-03-28; subId=7188; geoSampleAccession=GSM984605; labExpId=LID47964; bioRep=092NL; labProtocolId=092NLt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=spikeins; md5sum=b796224c569c1da56f329bbedb1c143b; size=115M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3133; geoSampleAccession=GSM767853; labExpId=LID9197; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep1; type=bam; md5sum=b32c92e3bbe827be3be546b72e8f040f; size=12G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3133; geoSampleAccession=GSM767853; labExpId=LID9197; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep1; type=bai; md5sum=764ce8f1f0d9934b778a3e49df721000; size=7.4M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep2.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-01-12; dateUnrestricted=2011-10-12; subId=3236; geoSampleAccession=GSM767853; labExpId=LID9198; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep2; type=bam; md5sum=12a595c26af0bfa2735cbf9ef0b334be; size=12G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-01-12; dateUnrestricted=2011-10-12; subId=3236; geoSampleAccession=GSM767853; labExpId=LID9198; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaAlnRep2; type=bai; md5sum=baa61168c5b67302cb49cd68910ef05e; size=7.6M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaFastqRd1Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3133; geoSampleAccession=GSM767853; labExpId=LID9197; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=fc2d1f89863f7d49b5561d2ff19ec270; size=7.0G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaFastqRd1Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-01-12; dateUnrestricted=2011-10-12; subId=3236; geoSampleAccession=GSM767853; labExpId=LID9198; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=5e67d5ad2378954dac6d7257ab42cd50; size=6.8G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3133; geoSampleAccession=GSM767853; labExpId=LID9197; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=5f7b34f801f5bd2733df18abb149c823; size=7.0G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaFastqRd2Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-01-12; dateUnrestricted=2011-10-12; subId=3236; geoSampleAccession=GSM767853; labExpId=LID9198; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=44ae101c1bf9b7826c9951b52692bc7f; size=6.9G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaMinusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3133; geoSampleAccession=GSM767853; labExpId=LID9197; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaMinusRawSigRep1; type=bigWig; md5sum=283c83c7ce7bae14595bee7213e52645; size=352M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaMinusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-01-12; dateUnrestricted=2011-10-12; subId=3236; geoSampleAccession=GSM767853; labExpId=LID9198; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaMinusRawSigRep2; type=bigWig; md5sum=d924ac0849191629d21b4855211cc312; size=387M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaPlusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3133; geoSampleAccession=GSM767853; labExpId=LID9197; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaPlusRawSigRep1; type=bigWig; md5sum=c7981359e0191f555ebed15ad3c51b1a; size=370M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaPlusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-01-12; dateUnrestricted=2011-10-12; subId=3236; geoSampleAccession=GSM767853; labExpId=LID9198; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusLongnonpolyaPlusRawSigRep2; type=bigWig; md5sum=278e344f7123faeb36e08e64ac2c6df6; size=408M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3609; geoSampleAccession=GSM767853; labExpId=LID9197,LID9198; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusPamContigs; type=bedRnaElements; md5sum=cf4327870ebc06b3014a7146279146d6; size=16M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamExonsDeNovo.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsDeNovo; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2012-05-30; dateUnrestricted=2013-03-02; subId=6936; geoSampleAccession=GSM767853; labExpId=LID9197,LID9198; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=b24670957a13835476d272eb69643cbe; size=13M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamExonsGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4548; geoSampleAccession=GSM767853; labExpId=LID9197,LID9198; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=fdebe77f001278d1cf724e2e7e57ac3c; size=18M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamGeneDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3609; geoSampleAccession=GSM767853; labExpId=LID9197,LID9198; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=ef14e83b3f283793ea40a9ca013e291b; size=8.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamGeneDeNovoV2.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7443; geoSampleAccession=GSM767853; labExpId=LID9197,LID9198; bioRep=003N,004N; labProtocolId=003N-,004N-; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=34f00aac7bc9a743e91034f31ac06048; size=9.1M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamGeneGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV7; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4548; geoSampleAccession=GSM767853; labExpId=LID9197,LID9198; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=b404b04740c9d05525303ddd219d0a7d; size=2.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3609; geoSampleAccession=GSM767853; labExpId=LID9197,LID9198; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusPamJunctions; type=bedRnaElements; md5sum=34d1e53e245de0e604e17687f73c5677; size=6.4M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamProtocolRep1.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM767853; labExpId=LID9197; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=6575c2058d48dd1a21c4153ef333b65a; size=433K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamProtocolRep2.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM767853; labExpId=LID9198; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=ba7b60a7f1e964098438e17b9d603a3c; size=430K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamSpikeinsRep1.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4215; geoSampleAccession=GSM767853; labExpId=LID9197; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=397704a68455fa92aac1240c253e559f; size=194M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4209; geoSampleAccession=GSM767853; labExpId=LID9198; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=6612d5d0a231072656dbc1eda7af77d1; size=123M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamTranscriptDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3609; geoSampleAccession=GSM767853; labExpId=LID9197,LID9198; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=ba909fa46154d4041a0231998f48cb14; size=38M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamTranscriptDeNovoV2.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7443; geoSampleAccession=GSM767853; labExpId=LID9197,LID9198; bioRep=003N,004N; labProtocolId=003N-,004N-; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=25d94a1ebb57280fafe1e0ccb9adb9db; size=9.7M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPamTranscriptGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV7; cell=GM12878; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000187; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4548; geoSampleAccession=GSM767853; labExpId=LID9197,LID9198; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusPamTranscriptGencV7; type=gtf; md5sum=58ffa71c7a4a6647ce8c296e244691a9; size=4.7M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1926; geoSampleAccession=GSM765386; labExpId=LID8532; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep1; type=bam; md5sum=94d505d54ee07a68e2a0afb193a8b565; size=15G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1926; geoSampleAccession=GSM765386; labExpId=LID8532; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep1; type=bai; md5sum=7487261f6ee3200dd9aa12b768e82545; size=8.1M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep2.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1927; geoSampleAccession=GSM765386; labExpId=LID8533; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep2; type=bam; md5sum=8e859e16bf00ff71cf55ffc322ac6126; size=13G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1927; geoSampleAccession=GSM765386; labExpId=LID8533; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusPapAlnRep2; type=bai; md5sum=9715cd9a9d52c65920c02b07fbda3c7a; size=7.7M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; 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organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapExonsGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4601; geoSampleAccession=GSM765386; labExpId=LID8532,LID8533; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=124aa41c8c51ceeedc189865951d2b6a; size=19M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapFastqRd1Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1926; geoSampleAccession=GSM765386; labExpId=LID8532; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=1c5c74e824e949024be76652adf53bbb; size=8.7G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapFastqRd1Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1927; geoSampleAccession=GSM765386; labExpId=LID8533; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=91a109ea3435de4ce301abc4e7b1f92a; size=7.6G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1926; geoSampleAccession=GSM765386; labExpId=LID8532; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=1f5b9f02a2c212e704900b37f2262f8b; size=8.9G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapFastqRd2Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1927; geoSampleAccession=GSM765386; labExpId=LID8533; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=df3c4fd68fc8a91f42f41d05aa490508; size=7.8G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapGeneDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3610; geoSampleAccession=GSM765386; labExpId=LID8532,LID8533; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=d3b5fe23587350a70f8572dce9900acf; size=4.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapGeneDeNovoV2.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7494; geoSampleAccession=GSM765386; labExpId=LID8532,LID8533; bioRep=003N,004N; labProtocolId=003N+,004N+; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=dad311c5e25bd468fc8e3eab75256bf6; size=3.5M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapGeneGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV7; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4601; geoSampleAccession=GSM765386; labExpId=LID8532,LID8533; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=6d16e1cb873a206f8fa7e142e33ed350; size=2.1M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3610; geoSampleAccession=GSM765386; labExpId=LID8532,LID8533; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusPapJunctions; type=bedRnaElements; md5sum=9e86ea08631e42b94293a0c3f0df89e8; size=13M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapMinusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1926; geoSampleAccession=GSM765386; labExpId=LID8532; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusPapMinusRawSigRep1; type=bigWig; md5sum=10d233aebd8034afb482997de40d2681; size=1.2G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapMinusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1927; geoSampleAccession=GSM765386; labExpId=LID8533; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusPapMinusRawSigRep2; type=bigWig; md5sum=75bfde2a99aecb7b2682e97f8e2f676f; size=1.2G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapPlusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; 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geoSampleAccession=GSM765386; labExpId=LID8533; bioRep=004N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqGm12878NucleusPapPlusRawSigRep2; type=bigWig; md5sum=2cb8be0f9da7a89b66bc76d766d1c639; size=1.2G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapProtocolRep1.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM765386; labExpId=LID8532; bioRep=003N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=54a5e4f16ec0119f59ba78d0d7b4a680; size=680K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapProtocolRep2.pdf.gz project=wgEncode; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000170; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3610; geoSampleAccession=GSM765386; labExpId=LID8532,LID8533; bioRep=003N,004N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=5a7317d04ad9c83757d00ce2c02d40f5; size=26M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqGm12878NucleusPapTranscriptDeNovoV2.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=GM12878; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000170; 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type=gtf; md5sum=cdc28cc78fac341a5df61f605c71e98b; size=5.1M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqH1hescCytosolLongnonpolyaAlnRep2.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=H1-hESC; localization=cytosol; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000198; dateSubmitted=2011-01-11; dateUnrestricted=2011-10-11; subId=3221; geoSampleAccession=GSM767842; labExpId=LID18549; bioRep=006C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqH1hescCytosolLongnonpolyaAlnRep2; type=bam; md5sum=8231e66c25359651f21d589872b2ec0d; size=4.7G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqH1hescCytosolLongnonpolyaAlnRep2.bam.bai project=wgEncode; 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dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=1912; geoSampleAccession=GSM758570; labExpId=LID8536; bioRep=006C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqH1hescCytosolPapAlnRep2; type=bam; md5sum=350490d4a0accd1d6746fb0ef32559f7; size=10G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqH1hescCytosolPapAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=H1-hESC; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000151; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=1912; geoSampleAccession=GSM758570; labExpId=LID8536; bioRep=006C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqH1hescCytosolPapAlnRep2; type=bai; md5sum=9e087d6bb68d71cc35ad9a027f58ae3b; 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type=bam; md5sum=da4d32efab8724e163ddc4aaf067cf46; size=8.6G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqH1hescNucleusLongnonpolyaAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=H1-hESC; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000199; dateSubmitted=2011-01-11; dateUnrestricted=2011-10-11; subId=3227; geoSampleAccession=GSM767841; labExpId=LID9199; bioRep=006N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqH1hescNucleusLongnonpolyaAlnRep2; type=bai; md5sum=d6b69acb1e1b42e680a21c711c5c8183; size=7.3M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqH1hescNucleusLongnonpolyaFastqRd1Rep2.fastq.gz project=wgEncode; 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dateUnrestricted=2013-04-16; subId=7463; geoSampleAccession=GSM758574; labExpId=LID8558; bioRep=006N; labProtocolId=006N+; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=fcf72a0df06aaad67793184aa6856b00; size=2.7M; replicate=2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqH1hescNucleusPapGeneGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV7; cell=H1-hESC; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000152; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4570; geoSampleAccession=GSM758574; labExpId=LID8558; bioRep=006N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=2daba672a0149f586c6bb7600ec3975c; size=1.9M; replicate=2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqH1hescNucleusPapJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=H1-hESC; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000152; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3618; geoSampleAccession=GSM758574; labExpId=LID8558; bioRep=006N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqH1hescNucleusPapJunctions; type=bedRnaElements; md5sum=b707c8043b87b986a062d2891317ee7f; size=6.6M; replicate=2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqH1hescNucleusPapMinusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=H1-hESC; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000152; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV7; cell=H1-hESC; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000152; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4570; geoSampleAccession=GSM758574; labExpId=LID8558; bioRep=006N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqH1hescNucleusPapTranscriptGencV7; type=gtf; md5sum=ecb8ac1a6b0d7b6c57de2792f5500c71; size=4.4M; replicate=2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalAlnRep2.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=6090101.11; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-02-25; dateUnrestricted=2012-11-24; subId=5871; labExpId=LID47021; bioRep=056WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalAlnRep2; type=bam; md5sum=c0d0cf8f07632805bb735abe87c17ccb; size=25G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=6090101.11; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-02-25; dateUnrestricted=2012-11-24; subId=5871; labExpId=LID47021; bioRep=056WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalAlnRep2; type=bai; md5sum=a63cd672d49b7522c899b1f0772f0b0e; size=9.2M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalFastqRd1Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=6090101.11; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-02-25; dateUnrestricted=2012-11-24; subId=5871; geoSampleAccession=GSM984614; labExpId=LID47021; bioRep=056WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=aec49289304649e000aa16327b32df6b; size=16G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalFastqRd2Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=6090101.11; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-02-25; dateUnrestricted=2012-11-24; subId=5871; geoSampleAccession=GSM984614; labExpId=LID47021; bioRep=056WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=dc5284a25b783eceb25dfe80f7b0c67b; size=16G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalMinusRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=6090101.11; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-02-25; dateUnrestricted=2012-11-24; subId=5871; geoSampleAccession=GSM984614; labExpId=LID47021; bioRep=056WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalMinusRep2; type=bigWig; md5sum=09f5a3a6ab33e4e4fdf3ca41c63fe8e6; size=367M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalPlusRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=6090101.11; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-02-25; dateUnrestricted=2012-11-24; subId=5871; geoSampleAccession=GSM984614; labExpId=LID47021; bioRep=056WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalPlusRep2; type=bigWig; md5sum=eab3ba43b807f302a1630797eeae5b0c; size=374M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoaf609010111CellTotalSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=6090101.11; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-02-25; dateUnrestricted=2012-11-24; subId=5871; geoSampleAccession=GSM984614; labExpId=LID47021; bioRep=056WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=spikeins; md5sum=65ebed69f15969e0ac4395ccb61121d4; size=190M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=6111301.9; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7191; labExpId=LID47020; bioRep=055WC; labProtocolId=055WCt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoafCellTotalAlnRep1; type=bam; md5sum=1995bd76774f0f0edee755824b8c43fe; size=20G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=6111301.9; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7191; labExpId=LID47020; bioRep=055WC; labProtocolId=055WCt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoafCellTotalAlnRep1; type=bai; md5sum=db8089847d54b33a57663b2edbbfcdf1; size=12M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalContigs.bedRnaElements.gz seqPlatform=Illumina_HiSeq_2000; composite=wgEncodeCshlLongRnaSeq; readType=2x101D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-06-29; dataVersion=ENCODE Jul 2012 Freeze; labProtocolId=055WCt,056WCt; md5sum=34d9699c6e975fefb0ed9aed90c8f6ac; dateUnrestricted=2013-03-29; size=19M; dccAccession=wgEncodeEH002679; replicate=1,2; view=Contigs; labExpId=LID47020,LID47021; tableName=wgEncodeCshlLongRnaSeqHaoafCellTotalContigs; subId=7193; cell=HAoAF; rnaExtract=total; spikeInPool=Nist13; geoSampleAccession=GSM984614; donorId=6111301.9,6090101.11; bioRep=055WC,056WC; lab=CSHL; type=bedRnaElements; localization=cell; labVersion=iIDR; grant=Gingeras; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalExonsDeNovo.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsDeNovo; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; donorId=6090101.11; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-05-30; dateUnrestricted=2013-03-02; subId=6988; geoSampleAccession=GSM984614; labExpId=LID47021; bioRep=056WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=gff; md5sum=2694a571a367f0ee201662729bef8771; size=15M; replicate=2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalExonsGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV10; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; donorId=6090101.11; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-03-27; dateUnrestricted=2012-12-27; subId=6368; geoSampleAccession=GSM984614; labExpId=LID47021; bioRep=056WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=gtf; md5sum=fbcd4158874cbbfaa1a36ebf9b82e5e2; size=18M; replicate=2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalFastqRd1Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=6111301.9; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7191; geoSampleAccession=GSM984614; labExpId=LID47020; bioRep=055WC; labProtocolId=055WCt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=4545a4ff57f7f2fb0f890d8a3fd6a228; size=18G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=6111301.9; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7191; geoSampleAccession=GSM984614; labExpId=LID47020; bioRep=055WC; labProtocolId=055WCt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=96439e78fb98dca3ca993cddde0de84d; size=18G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalGeneDeNovo.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; donorId=6090101.11; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7406; geoSampleAccession=GSM984614; labExpId=LID47021; bioRep=056WC; labProtocolId=056WCt; 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composite=wgEncodeCshlLongRnaSeq; readType=2x101D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-06-29; dataVersion=ENCODE Jul 2012 Freeze; labProtocolId=055WCt,056WCt; md5sum=c80e69edc0c4c6b7e1cd704bdca7bb68; dateUnrestricted=2013-03-28; size=19M; dccAccession=wgEncodeEH002679; replicate=1,2; view=Junctions; labExpId=LID47020,LID47021; tableName=wgEncodeCshlLongRnaSeqHaoafCellTotalJunctions; subId=7195; cell=HAoAF; rnaExtract=total; spikeInPool=Nist13; geoSampleAccession=GSM984614; donorId=6111301.9,6090101.11; bioRep=055WC,056WC; lab=CSHL; type=bedRnaElements; localization=cell; labVersion=iIDR; grant=Gingeras; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalMinusSignalRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=6111301.9; 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seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoafCellTotalPlusSignalRep1; type=bigWig; md5sum=7609eff7681ef2c5136d7f153b384e2c; size=130M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalProtocolRep2.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=6090101.11; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-04-27; dateUnrestricted=2013-01-27; subId=6871; geoSampleAccession=GSM984614; labExpId=LID47021; bioRep=056WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=pdf; md5sum=e8bda9a226ac7fd929c555822881c5ea; size=297K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalSpikeinsRep1.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=6111301.9; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-06-29; dateUnrestricted=2013-03-29; subId=7191; geoSampleAccession=GSM984614; labExpId=LID47020; bioRep=055WC; labProtocolId=055WCt; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=spikeins; md5sum=306d35582cb87aab0e95c7d5cc8120d9; size=189M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalTranscriptDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; donorId=6090101.11; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7406; geoSampleAccession=GSM984614; labExpId=LID47021; bioRep=056WC; labProtocolId=056WCt; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=gtf; md5sum=642d004d26edbe002ade3b67c3c55f38; size=4.6M; replicate=2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoafCellTotalTranscriptGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV10; cell=HAoAF; localization=cell; rnaExtract=total; readType=2x101D; donorId=6090101.11; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002679; dateSubmitted=2012-03-27; dateUnrestricted=2012-12-27; subId=6368; geoSampleAccession=GSM984614; labExpId=LID47021; bioRep=056WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoafCellTotalTranscriptGencV10; type=gtf; md5sum=a2eabbc479506e95f68652076a39acb8; 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dataType=RnaSeq; view=Alignments; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=7071706.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-02-25; dateUnrestricted=2012-11-25; subId=5874; labExpId=LID47022; bioRep=057WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoec70717061CellTotalAlnRep1; type=bai; md5sum=cf889319ae93ab4ff69dc6563e9986a5; size=9.0M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoec70717061CellTotalFastqRd1Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=7071706.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-02-25; dateUnrestricted=2012-11-25; subId=5874; geoSampleAccession=GSM984618; labExpId=LID47022; bioRep=057WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=cda6c79f1c5cd5b7cab4cbc3e3bc77ce; size=15G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoec70717061CellTotalFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=7071706.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-02-25; dateUnrestricted=2012-11-25; subId=5874; geoSampleAccession=GSM984618; labExpId=LID47022; bioRep=057WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=efeab6a097f964a6680fec354fff2dec; size=15G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoec70717061CellTotalMinusRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=7071706.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-02-25; dateUnrestricted=2012-11-25; subId=5874; geoSampleAccession=GSM984618; labExpId=LID47022; bioRep=057WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoec70717061CellTotalMinusRep1; type=bigWig; md5sum=c337ddd4e1e09072747176d7698f583b; size=399M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoec70717061CellTotalPlusRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=7071706.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; 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localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8061102.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-03-14; dateUnrestricted=2012-12-14; subId=5994; labExpId=LID47023; bioRep=058WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoecCellTotalAlnRep2; type=bai; md5sum=20831ae47875a742a29b0f0f2d244b1e; size=8.9M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoecCellTotalContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; donorId=7071706.1,8061102.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-03-16; dateUnrestricted=2012-12-16; subId=6030; geoSampleAccession=GSM984618; labExpId=LID47022,LID47023; bioRep=057WC,058WC; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV10; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; donorId=7071706.1,8061102.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-03-27; dateUnrestricted=2012-12-27; subId=6376; geoSampleAccession=GSM984618; labExpId=LID47022,LID47023; bioRep=057WC,058WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=gtf; md5sum=249169b333a2db8b14e336d024dac7ca; size=20M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoecCellTotalFastqRd1Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8061102.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-03-14; 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composite=wgEncodeCshlLongRnaSeq; readType=2x101D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-07-16; dataVersion=ENCODE Jul 2012 Freeze; labProtocolId=057WCt,058WCt; md5sum=1f5341da140c52a07408623e07cc27bc; dateUnrestricted=2013-04-16; size=6.1M; dccAccession=wgEncodeEH002680; replicate=1,2; view=GeneDeNovo; labExpId=LID47022,LID47023; subId=7412; cell=HAoEC; rnaExtract=total; spikeInPool=Nist13; geoSampleAccession=GSM984618; donorId=7071706.1,8061102.1; bioRep=057WC,058WC; lab=CSHL; type=gff; localization=cell; labVersion=iIDR; grant=Gingeras; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoecCellTotalGeneGencV10.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV10; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; donorId=7071706.1,8061102.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-03-27; dateUnrestricted=2012-12-27; subId=6376; geoSampleAccession=GSM984618; labExpId=LID47022,LID47023; bioRep=057WC,058WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=gtf; md5sum=1502f78d629d66ad71152dce4156de49; size=1.9M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoecCellTotalJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; donorId=7071706.1,8061102.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-03-16; dateUnrestricted=2012-12-16; subId=6077; geoSampleAccession=GSM984618; labExpId=LID47022,LID47023; bioRep=057WC,058WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoecCellTotalJunctions; type=bedRnaElements; md5sum=2c2e1230a24dd8872e5f152781e1222b; size=14M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoecCellTotalMinusRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8061102.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-03-14; dateUnrestricted=2012-12-14; subId=5994; geoSampleAccession=GSM984618; labExpId=LID47023; bioRep=058WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoecCellTotalMinusRep2; type=bigWig; md5sum=b22af9bfc9d1d1b4c854ec125b3de8b6; size=338M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoecCellTotalPlusRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8061102.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-03-14; dateUnrestricted=2012-12-14; subId=5994; geoSampleAccession=GSM984618; labExpId=LID47023; bioRep=058WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHaoecCellTotalPlusRep2; type=bigWig; md5sum=0eadd39b79ce4507e535612b19271564; size=344M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoecCellTotalProtocolRep1.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=7071706.1; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-04-27; dateUnrestricted=2013-01-27; subId=6895; geoSampleAccession=GSM984618; labExpId=LID47022; bioRep=057WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=pdf; md5sum=a689023a15023db28a7fe3711339e926; size=270K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoecCellTotalProtocolRep2.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8061102.1; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-04-27; dateUnrestricted=2013-01-27; subId=6896; geoSampleAccession=GSM984618; labExpId=LID47023; bioRep=058WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=pdf; md5sum=9bb124b2f404aa42aa4aafbca8dcf74f; size=292K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoecCellTotalSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=HAoEC; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8061102.1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002680; dateSubmitted=2012-03-14; dateUnrestricted=2012-12-14; subId=5994; geoSampleAccession=GSM984618; labExpId=LID47023; bioRep=058WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=spikeins; md5sum=b05a055223a788374a91f0e2905f0d40; size=106M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHaoecCellTotalTranscriptDeNovo.gtf.gz seqPlatform=Illumina_HiSeq_2000; composite=wgEncodeCshlLongRnaSeq; readType=2x101D; dataType=RnaSeq; project=wgEncode; dateSubmitted=2012-07-16; dataVersion=ENCODE Jul 2012 Freeze; labProtocolId=057WCt,058WCt; md5sum=80c5fffa8547a1e37e3073364e333a8b; dateUnrestricted=2013-04-16; size=6.6M; dccAccession=wgEncodeEH002680; 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type=gtf; md5sum=3e2718c6980d67fb340980c9a09ad6b8; size=5.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch00113082pCellTotalAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=0011308.2P; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5868; labExpId=LID47024; bioRep=059WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHch00113082pCellTotalAlnRep1; type=bam; md5sum=36fbf385292332bd7b4ccb905ed2b45f; size=30G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch00113082pCellTotalAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=0011308.2P; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5868; labExpId=LID47024; bioRep=059WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHch00113082pCellTotalAlnRep1; type=bai; md5sum=f3da6d27baf72380d68aaeec91513496; size=9.8M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch00113082pCellTotalFastqRd1Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=0011308.2P; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5868; geoSampleAccession=GSM984611; labExpId=LID47024; bioRep=059WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=0b4fa954aa0cf2419acd1cbd6b4c0362; size=19G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch00113082pCellTotalFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=0011308.2P; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5868; geoSampleAccession=GSM984611; labExpId=LID47024; bioRep=059WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=c9731151eb5329377f29ab04e99fdd3d; size=19G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch00113082pCellTotalMinusRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=0011308.2P; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5868; geoSampleAccession=GSM984611; labExpId=LID47024; bioRep=059WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHch00113082pCellTotalMinusRep1; type=bigWig; md5sum=1d14cf8d5c47ba3e13c11cc978d47344; size=370M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch00113082pCellTotalPlusRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=0011308.2P; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5868; geoSampleAccession=GSM984611; labExpId=LID47024; bioRep=059WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHch00113082pCellTotalPlusRep1; type=bigWig; md5sum=85f89554f323ab1fc88bcf8bf2a38d37; size=377M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch00113082pCellTotalSpikeinsRep1.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=1; donorId=0011308.2P; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5868; geoSampleAccession=GSM984611; labExpId=LID47024; bioRep=059WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=spikeins; md5sum=ea7692246dda170c78122032cccc3f8d; size=161M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch81008082CellTotalAlnRep2.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8100808.2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5866; labExpId=LID47025; bioRep=060WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHch81008082CellTotalAlnRep2; type=bam; md5sum=1c3b65dc9d9488b6bb2073f2269bd712; size=26G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch81008082CellTotalAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8100808.2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5866; labExpId=LID47025; bioRep=060WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHch81008082CellTotalAlnRep2; type=bai; md5sum=a85ee6f36f1ad029f7928a7cdc4fea09; size=9.5M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch81008082CellTotalFastqRd1Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8100808.2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5866; geoSampleAccession=GSM984611; labExpId=LID47025; bioRep=060WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=443e00af187743ba7bdf21003e519370; size=16G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch81008082CellTotalFastqRd2Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8100808.2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5866; geoSampleAccession=GSM984611; labExpId=LID47025; bioRep=060WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=fastq; md5sum=071cd0a130551db80d6e92d96a195dd1; size=16G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch81008082CellTotalMinusRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8100808.2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5866; geoSampleAccession=GSM984611; labExpId=LID47025; bioRep=060WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHch81008082CellTotalMinusRep2; type=bigWig; md5sum=b3eb5300e4d2472a5435c16f2b094d54; size=419M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch81008082CellTotalPlusRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8100808.2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5866; geoSampleAccession=GSM984611; labExpId=LID47025; bioRep=060WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHch81008082CellTotalPlusRep2; type=bigWig; md5sum=e93bf22120127d4729babf3b93cef176; size=427M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHch81008082CellTotalSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; replicate=2; donorId=8100808.2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-02-24; dateUnrestricted=2012-11-24; subId=5866; geoSampleAccession=GSM984611; labExpId=LID47025; bioRep=060WC; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; type=spikeins; md5sum=59b247a18830ef599423616ea03d475c; size=126M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHchCellTotalContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=HCH; localization=cell; rnaExtract=total; readType=2x101D; donorId=0011308.2P,8100808.2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH002674; dateSubmitted=2012-03-14; dateUnrestricted=2012-12-14; subId=5996; geoSampleAccession=GSM984611; labExpId=LID47024,LID47025; bioRep=059WC,060WC; labVersion=iIDR; seqPlatform=Illumina_HiSeq_2000; spikeInPool=Nist13; tableName=wgEncodeCshlLongRnaSeqHchCellTotalContigs; type=bedRnaElements; md5sum=6f1b44fa5f4ddcc9799558c50d765312; size=32M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHchCellTotalExonsDeNovo.gff.gz seqPlatform=Illumina_HiSeq_2000; 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dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1951; geoSampleAccession=GSM765404; labExpId=LID8469; bioRep=011C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHelas3CytosolPapAlnRep1; type=bam; md5sum=fc751da26061a6af4e702add69c06063; size=13G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHelas3CytosolPapAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HeLa-S3; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000171; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1951; geoSampleAccession=GSM765404; labExpId=LID8469; bioRep=011C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHelas3CytosolPapAlnRep1; type=bai; md5sum=f35d3b2587393165866444a8b398dc66; 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md5sum=5ce2bf7098bae9ae1ebaea317ef1d489; size=8.9M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHelas3CytosolPapMinusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HeLa-S3; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000171; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=1951; geoSampleAccession=GSM765404; labExpId=LID8469; bioRep=011C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHelas3CytosolPapMinusRawSigRep1; type=bigWig; md5sum=245a245e27347eda4d51298f3d5736a0; size=338M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHelas3CytosolPapMinusRawSigRep2.bigWig project=wgEncode; 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dateUnrestricted=2011-06-30; subId=1951; geoSampleAccession=GSM765404; labExpId=LID8469; bioRep=011C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHelas3CytosolPapPlusRawSigRep1; type=bigWig; md5sum=5f645c0f4a15472eb869054cdcf8f4ef; size=348M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHelas3CytosolPapPlusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=HeLa-S3; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000171; dateSubmitted=2010-09-30; dateUnrestricted=2011-06-30; subId=2447; geoSampleAccession=GSM765404; labExpId=LID8470; bioRep=012C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHelas3CytosolPapPlusRawSigRep2; type=bigWig; md5sum=4bed223c95320b5be4bc44a2d45a8510; 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rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000171; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM765404; labExpId=LID8470; bioRep=012C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=aa3bda0ceca1d50b5051d05bf52bb574; size=967K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHelas3CytosolPapSpikeinsRep1.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=HeLa-S3; localization=cytosol; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000171; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4211; geoSampleAccession=GSM765404; labExpId=LID8469; bioRep=011C; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=d03a1359d94ebe3238562a2edb10f339; 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composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=HeLa-S3; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000190; dateSubmitted=2010-12-23; dateUnrestricted=2011-09-23; subId=3142; geoSampleAccession=GSM767848; labExpId=LID9201; bioRep=012N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaPlusRawSigRep2; type=bigWig; md5sum=36fd5aac5ec6fcbab48c4033ae60916f; size=247M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHelas3NucleusPamContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=HeLa-S3; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000190; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=HeLa-S3; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000190; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3633; geoSampleAccession=GSM767848; labExpId=LID9200,LID9201; bioRep=011N,012N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHelas3NucleusPamJunctions; type=bedRnaElements; md5sum=04070b9f30799c4e4ddd5bdf923efe3d; size=5.8M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHelas3NucleusPamProtocolRep1.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=HeLa-S3; localization=nucleus; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000190; 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composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=HeLa-S3; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000172; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7444; geoSampleAccession=GSM765403; labExpId=LID8559,LID8560; bioRep=011N,012N; labProtocolId=011N+,012N+; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=3551fb08c135486d5c6e7de069b50e04; size=3.3M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHelas3NucleusPapGeneGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV7; cell=HeLa-S3; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000172; 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size=136M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHelas3NucleusPapSpikeinsRep2.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=HeLa-S3; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000172; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4272; geoSampleAccession=GSM765403; labExpId=LID8560; bioRep=012N; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=spikeins; md5sum=6e890269f6ed283edaa2627ab6e7a985; size=134M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHelas3NucleusPapTranscriptDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=HeLa-S3; 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labExpId=LID8559,LID8560; bioRep=011N,012N; labProtocolId=011N+,012N+; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=7c976b0b5fef6e9fbef25f912f6831e6; size=3.8M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHelas3NucleusPapTranscriptGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV7; cell=HeLa-S3; localization=nucleus; rnaExtract=longPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000172; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4550; geoSampleAccession=GSM765403; labExpId=LID8559,LID8560; bioRep=011N,012N; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHelas3NucleusPapTranscriptGencV7; type=gtf; md5sum=6b3fadce4b87a43c7eb4572dba74ef84; size=5.0M; replicate=1,2; organism=human; 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cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2409; geoSampleAccession=GSM758567; labExpId=LID8792; bioRep=013WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaAlnRep1; type=bai; md5sum=a30db38a49b3775d94924fe115ba841f; size=6.9M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaAlnRep2.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-01-21; dateUnrestricted=2011-10-21; subId=3487; geoSampleAccession=GSM758567; labExpId=LID8793; bioRep=014WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaAlnRep2; type=bam; md5sum=345146c1ee46e085878700238278e732; size=9.6G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaAlnRep2.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-01-21; dateUnrestricted=2011-10-21; subId=3487; geoSampleAccession=GSM758567; labExpId=LID8793; bioRep=014WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaAlnRep2; type=bai; md5sum=785c4b5aae4928f1b01919daec0f5de3; size=7.2M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaFastqRd1Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2409; geoSampleAccession=GSM758567; labExpId=LID8792; bioRep=013WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=6543fd8068429b1390518f17c3ddccfa; size=6.5G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaFastqRd1Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd1; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-01-21; dateUnrestricted=2011-10-21; subId=3487; geoSampleAccession=GSM758567; labExpId=LID8793; bioRep=014WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=0d63040bde652cbc0aa4acb8e844dffd; size=6.7G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaFastqRd2Rep1.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2409; geoSampleAccession=GSM758567; labExpId=LID8792; bioRep=013WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=5ac7daccae2134a5c780ae7b35bda5d7; size=6.5G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaFastqRd2Rep2.fastq.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=FastqRd2; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-01-21; dateUnrestricted=2011-10-21; subId=3487; geoSampleAccession=GSM758567; labExpId=LID8793; bioRep=014WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=fastq; md5sum=c4ba1cd77ede57d6e271c136836932e8; size=6.6G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaMinusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2409; geoSampleAccession=GSM758567; labExpId=LID8792; bioRep=013WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaMinusRawSigRep1; type=bigWig; md5sum=42764d449a5308de0a679cbe4f4164d5; size=633M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaMinusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=MinusSignal; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-01-21; dateUnrestricted=2011-10-21; subId=3487; geoSampleAccession=GSM758567; labExpId=LID8793; bioRep=014WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaMinusRawSigRep2; type=bigWig; md5sum=740eb1c8986ecc2aac1582e7d4772c41; size=205M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaPlusRawSigRep1.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=2409; geoSampleAccession=GSM758567; labExpId=LID8792; bioRep=013WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaPlusRawSigRep1; type=bigWig; md5sum=387f757fc4749c868f0777f8672a6aab; size=647M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaPlusRawSigRep2.bigWig project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=PlusSignal; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-01-21; dateUnrestricted=2011-10-21; subId=3487; geoSampleAccession=GSM758567; labExpId=LID8793; bioRep=014WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellLongnonpolyaPlusRawSigRep2; type=bigWig; md5sum=e78ec2de531a3149d81cf24cac6350ac; size=213M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamContigs.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Contigs; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3639; geoSampleAccession=GSM758567; labExpId=LID8792,LID8793; bioRep=013WC,014WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellPamContigs; type=bedRnaElements; md5sum=9b76eb9ca54bc29584565123b5e1be8c; size=14M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamExonsDeNovo.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsDeNovo; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2012-05-30; dateUnrestricted=2013-03-02; subId=7006; geoSampleAccession=GSM758567; labExpId=LID8792,LID8793; bioRep=013WC,014WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=f0067f208c194486ab9cbc6991f4f693; size=13M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamExonsGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=ExonsGencV7; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4580; geoSampleAccession=GSM758567; labExpId=LID8792,LID8793; bioRep=013WC,014WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=403d13983ceeac1d8bcc76d93e8f04f6; size=19M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamGeneDeNovo.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3639; geoSampleAccession=GSM758567; labExpId=LID8792,LID8793; bioRep=013WC,014WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=d49d4370a27a11ec414c528242ddab24; size=5.0M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamGeneDeNovoV2.gff.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneDeNovo; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7471; geoSampleAccession=GSM758567; labExpId=LID8792,LID8793; bioRep=013WC,014WC; labProtocolId=013WC-,014WC-; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gff; md5sum=b109268067f2cd72feff679d371441f3; size=7.5M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamGeneGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=GeneGencV7; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4580; geoSampleAccession=GSM758567; labExpId=LID8792,LID8793; bioRep=013WC,014WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=d543c61de8d7a79d1215ff397fcc8d9d; size=2.1M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamJunctions.bedRnaElements.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Junctions; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3639; geoSampleAccession=GSM758567; labExpId=LID8792,LID8793; bioRep=013WC,014WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellPamJunctions; type=bedRnaElements; md5sum=8db612081514779be01378e37c1deb0b; size=6.1M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamProtocolRep1.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM758567; labExpId=LID8792; bioRep=013WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=f0bde7ebc7314b429c60b701faa42ea2; size=444K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamProtocolRep2.pdf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Protocol; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-04-20; dateUnrestricted=2012-01-20; subId=3259; geoSampleAccession=GSM758567; labExpId=LID8793; bioRep=014WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=pdf; md5sum=8bb54454a42c80ba046c266211b65df3; size=443K; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamSpikeinsRep1.spikeins project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Spikeins; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-06-08; dateUnrestricted=2012-03-08; subId=4242; geoSampleAccession=GSM758567; 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grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-02-18; dateUnrestricted=2011-11-18; subId=3639; geoSampleAccession=GSM758567; labExpId=LID8792,LID8793; bioRep=013WC,014WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=b1ff9047ab3173bdb93759332d2ea7d3; size=24M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamTranscriptDeNovoV2.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptDeNovo; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; submittedDataVersion=V2 - New version of processing used.; dataVersion=ENCODE Jul 2012 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2012-07-16; dateUnrestricted=2013-04-16; subId=7471; geoSampleAccession=GSM758567; labExpId=LID8792,LID8793; bioRep=013WC,014WC; labProtocolId=013WC-,014WC-; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; type=gtf; md5sum=12e3fd6336c4763fce20bb9b036ab3a7; size=8.1M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPamTranscriptGencV7.gtf.gz project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=TranscriptGencV7; cell=HepG2; localization=cell; rnaExtract=longNonPolyA; readType=2x76D; dataVersion=ENCODE Mar 2012 Freeze; dccAccession=wgEncodeEH000159; dateSubmitted=2011-07-13; dateUnrestricted=2012-04-13; subId=4580; geoSampleAccession=GSM758567; labExpId=LID8792,LID8793; bioRep=013WC,014WC; labVersion=iIDR; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellPamTranscriptGencV7; type=gtf; md5sum=32d56e71f5c4c1d9ddf67273313eb416; size=4.8M; replicate=1,2; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPapAlnRep1.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HepG2; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000160; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=1958; geoSampleAccession=GSM758575; labExpId=LID16635; bioRep=013WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellPapAlnRep1; type=bam; md5sum=02767a22e4364632f70602c093b00c19; size=13G; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPapAlnRep1.bam.bai project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HepG2; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=1; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000160; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=1958; geoSampleAccession=GSM758575; labExpId=LID16635; bioRep=013WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellPapAlnRep1; type=bai; md5sum=6e35170cd88fd5d68d6528a4da16d2f3; size=6.8M; organism=human; http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/releaseLatest/wgEncodeCshlLongRnaSeqHepg2CellPapAlnRep2.bam project=wgEncode; grant=Gingeras; lab=CSHL; composite=wgEncodeCshlLongRnaSeq; dataType=RnaSeq; view=Alignments; cell=HepG2; localization=cell; rnaExtract=longPolyA; readType=2x76D; replicate=2; dataVersion=ENCODE Jan 2011 Freeze; dccAccession=wgEncodeEH000160; dateSubmitted=2010-09-29; dateUnrestricted=2011-06-29; subId=1960; geoSampleAccession=GSM758575; labExpId=LID16636; bioRep=014WC; seqPlatform=Illumina_GA2x; spikeInPool=Nist14; tableName=wgEncodeCshlLongRnaSeqHepg2CellPapAlnRep2; type=bam; md5