# gffcompare v0.11.2 | Command line was:
#gffcompare -o 9ddf580f-13e4-4d93-a09a-d9c320685464PREF -r /users/rg/gkaur/LyRic_gencode/output/annotations/Pre.SIRVs.gff 9ddf580f-13e4-4d93-a09a-d9c320685464
#

#= Summary for dataset: 9ddf580f-13e4-4d93-a09a-d9c320685464 
#     Query mRNAs :      92 in      15 loci  (88 multi-exon transcripts)
#            (10 multi-transcript loci, ~6.1 transcripts per locus)
# Reference mRNAs :      68 in      18 loci  (60 multi-exon)
# Super-loci w/ reference transcripts:       15
#-----------------| Sensitivity | Precision  |
        Base level:    87.6     |    98.3    |
        Exon level:    87.1     |    79.0    |
      Intron level:    86.6     |    73.5    |
Intron chain level:    65.0     |    44.3    |
  Transcript level:    63.2     |    46.7    |
       Locus level:    83.3     |   100.0    |

     Matching intron chains:      39
       Matching transcripts:      43
              Matching loci:      15

          Missed exons:       7/186	(  3.8%)
           Novel exons:       0/214	(  0.0%)
        Missed introns:       2/112	(  1.8%)
         Novel introns:       0/132	(  0.0%)
           Missed loci:       3/18	( 16.7%)
            Novel loci:       0/15	(  0.0%)

 Total union super-loci across all input datasets: 15 
92 out of 92 consensus transcripts written in 9ddf580f-13e4-4d93-a09a-d9c320685464PREF.annotated.gtf (0 discarded as redundant)