# gffcompare v0.11.2 | Command line was:
#gffcompare -o 5c0870b9-c86c-4184-baff-c11f6a98214cPREF -r /users/rg/gkaur/LyRic_gencode/output/annotations/Pre.SIRVs.gff 5c0870b9-c86c-4184-baff-c11f6a98214c
#

#= Summary for dataset: 5c0870b9-c86c-4184-baff-c11f6a98214c 
#     Query mRNAs :     231 in      18 loci  (221 multi-exon transcripts)
#            (11 multi-transcript loci, ~12.8 transcripts per locus)
# Reference mRNAs :      68 in      18 loci  (60 multi-exon)
# Super-loci w/ reference transcripts:       17
#-----------------| Sensitivity | Precision  |
        Base level:    96.9     |    94.7    |
        Exon level:    90.9     |    60.5    |
      Intron level:    89.3     |    47.6    |
Intron chain level:    66.7     |    18.1    |
  Transcript level:    69.1     |    20.3    |
       Locus level:    94.4     |    94.4    |

     Matching intron chains:      40
       Matching transcripts:      47
              Matching loci:      17

          Missed exons:       4/186	(  2.2%)
           Novel exons:       2/375	(  0.5%)
        Missed introns:       2/112	(  1.8%)
         Novel introns:       1/210	(  0.5%)
           Missed loci:       1/18	(  5.6%)
            Novel loci:       1/18	(  5.6%)

 Total union super-loci across all input datasets: 18 
231 out of 231 consensus transcripts written in 5c0870b9-c86c-4184-baff-c11f6a98214cPREF.annotated.gtf (0 discarded as redundant)