# gffcompare v0.11.2 | Command line was:
#gffcompare -o 208ae4e2-b4ca-433b-ab1e-503296531542PREF -r /users/rg/gkaur/LyRic_gencode/output/annotations/Pre.SIRVs.gff 208ae4e2-b4ca-433b-ab1e-503296531542
#

#= Summary for dataset: 208ae4e2-b4ca-433b-ab1e-503296531542 
#     Query mRNAs :      48 in      15 loci  (45 multi-exon transcripts)
#            (11 multi-transcript loci, ~3.2 transcripts per locus)
# Reference mRNAs :      68 in      18 loci  (60 multi-exon)
# Super-loci w/ reference transcripts:       14
#-----------------| Sensitivity | Precision  |
        Base level:    77.3     |    98.4    |
        Exon level:    73.7     |    91.4    |
      Intron level:    67.9     |    91.6    |
Intron chain level:    60.0     |    80.0    |
  Transcript level:    57.4     |    81.2    |
       Locus level:    77.8     |    93.3    |

     Matching intron chains:      36
       Matching transcripts:      39
              Matching loci:      14

          Missed exons:      26/186	( 14.0%)
           Novel exons:       0/140	(  0.0%)
        Missed introns:      21/112	( 18.8%)
         Novel introns:       0/83	(  0.0%)
           Missed loci:       4/18	( 22.2%)
            Novel loci:       0/15	(  0.0%)

 Total union super-loci across all input datasets: 14 
48 out of 48 consensus transcripts written in 208ae4e2-b4ca-433b-ab1e-503296531542PREF.annotated.gtf (0 discarded as redundant)