# gffcompare v0.11.2 | Command line was:
#gffcompare -o 4461894f-c25f-43ee-b447-f95c1c8156a4PREF -r /users/rg/gkaur/LyRic_gencode/output/annotations/Pre.SIRVs.gff 4461894f-c25f-43ee-b447-f95c1c8156a4
#

#= Summary for dataset: 4461894f-c25f-43ee-b447-f95c1c8156a4 
#     Query mRNAs :     145 in      16 loci  (141 multi-exon transcripts)
#            (10 multi-transcript loci, ~9.1 transcripts per locus)
# Reference mRNAs :      68 in      18 loci  (60 multi-exon)
# Super-loci w/ reference transcripts:       15
#-----------------| Sensitivity | Precision  |
        Base level:    88.4     |    94.3    |
        Exon level:    87.6     |    65.4    |
      Intron level:    86.6     |    57.4    |
Intron chain level:    65.0     |    27.7    |
  Transcript level:    63.2     |    29.7    |
       Locus level:    83.3     |    93.8    |

     Matching intron chains:      39
       Matching transcripts:      43
              Matching loci:      15

          Missed exons:       7/186	(  3.8%)
           Novel exons:       2/286	(  0.7%)
        Missed introns:       2/112	(  1.8%)
         Novel introns:       1/169	(  0.6%)
           Missed loci:       3/18	( 16.7%)
            Novel loci:       1/16	(  6.2%)

 Total union super-loci across all input datasets: 16 
145 out of 145 consensus transcripts written in 4461894f-c25f-43ee-b447-f95c1c8156a4PREF.annotated.gtf (0 discarded as redundant)