# gffcompare v0.10.1 | Command line was:
#/users/rg/buszczynska/bin/gffcompare/gffcompare -N -M -r gen.lncRNAs.hg38.gtf bigtrans.lncRNAs.hg38.gtf -o bigtrans.genOverlap
#

#= Summary for dataset: bigtrans.lncRNAs.hg38.gtf 
#     Query mRNAs :   24702 in   13705 loci  (24702 multi-exon transcripts)
#            (3887 multi-transcript loci, ~1.8 transcripts per locus)
# Reference mRNAs :   23945 in   12185 loci  (23945 multi-exon)
# Super-loci w/ reference transcripts:    10532
#-----------------| Sensitivity | Precision  |
        Base level:    78.3     |    50.7    |
        Exon level:    73.9     |    71.9    |
      Intron level:    78.9     |    76.7    |
Intron chain level:    74.3     |    72.0    |
  Transcript level:    74.3     |    72.0    |
       Locus level:    87.9     |    78.2    |

     Matching intron chains:   17785
       Matching transcripts:   17785
              Matching loci:   10708

          Missed exons:    9471/64307	( 14.7%)
           Novel exons:   11540/62987	( 18.3%)
        Missed introns:    6176/41633	( 14.8%)
         Novel introns:    6689/42800	( 15.6%)
           Missed loci:    1067/12185	(  8.8%)
            Novel loci:    1858/13705	( 13.6%)

 Total union super-loci across all input datasets: 13601 
24702 out of 24702 consensus transcripts written in bigtrans.genOverlap.annotated.gtf (0 discarded as redundant)