#Partially deleted in new
chr1	120765390	120838332	BIG-trx-chr1-2195.1_TSS.120838332	0	-	120765390	120838332	0	3	1395,609,134,	0,70419,72808,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	142936689	143170282	BIG-trx-chr1-2243.1	0	+	142936689	143170282	0	3	10,62,8400,	0,182368,225193,
#Partially deleted in new
chr1	143118704	143211070	BIG-trx-chr1-2245.2	0	-	143118704	143211070	0	9	475,93,2712,54,162,214,282,150,1641,	0,2368,14439,70729,75476,76975,77817,89022,90725,
#Partially deleted in new
chr1	143119060	143158071	BIG-trx-chr1-2243.2	0	+	143119060	143158071	0	3	59,203,962,	0,37404,38049,
#Partially deleted in new
chr1	143119060	143233417	BIG-trx-chr1-2243.3	0	+	143119060	143233417	0	4	59,88,268,1371,	0,101573,112233,112986,
#Partially deleted in new
chr1	143119060	143231756	BIG-trx-chr1-2243.5	0	+	143119060	143231756	0	4	59,88,45,463,	0,101573,107298,112233,
#Partially deleted in new
chr1	143119060	143232318	BIG-trx-chr1-2243.4	0	+	143119060	143232318	0	3	59,283,272,	0,112218,112986,
#Partially deleted in new
chr1	143213236	143240439	BIG-trx-chr1-2248.3	0	-	143213236	143240439	0	9	20,71,73,29,85,70,72,31,151,	0,4073,10094,10258,13077,17105,17878,19854,27052,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	143216055	143226395	BIG-trx-chr1-2248.4	0	-	143216055	143226395	0	5	81,71,73,29,82,	0,1254,7275,7439,10258,
#Partially deleted in new
chr1	143223330	143240429	BIG-trx-chr1-2248.7	0	-	143223330	143240429	0	8	73,29,82,196,70,31,36,141,	0,164,2983,4550,7011,9760,14349,16958,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	143229765	143233121	BIG-trx-chr1-2248.8	0	-	143229765	143233121	0	2	646,31,	0,3325,
#Partially deleted in new
chr1	143236904	143240414	BIG-trx-chr1-2248.11	0	-	143236904	143240414	0	2	176,126,	0,3384,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	143236904	143237715	BIG-trx-chr1-2248.9	0	-	143236904	143237715	0	2	102,36,	0,775,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	143236904	143237715	BIG-trx-chr1-2248.10	0	-	143236904	143237715	0	2	84,36,	0,775,
#Partially deleted in new
chr1	143241907	143394535	BIG-trx-chr1-2249.1	0	+	143241907	143394535	0	4	1332,146,214,545,	0,149796,150535,152083,
#Partially deleted in new
chr1	143262674	143365990	BIG-trx-chr1-2251.1	0	-	143262674	143365990	0	3	952,2147,606,	0,99626,102710,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	143288790	143433520	BIG-trx-chr1-2256.1	0	+	143288790	143433520	0	3	116,467,1821,	0,114607,142909,
#Partially deleted in new
chr1	143289167	143436274	BIG-trx-chr1-2258.1	0	-	143289167	143436274	0	2	1653,3153,	0,143954,
#Partially deleted in new
chr1	143647638	143744410	BIG-trx-chr1-2269.2	0	-	143647638	143744410	0	4	392,109,1499,210,	0,6323,15059,96562,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	143685957	143716941	BIG-trx-chr1-2273.1	0	+	143685957	143716941	0	7	21,279,236,315,123,97,219,	0,1073,19053,24031,26516,27431,30765,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	143699872	143713999	BIG-trx-chr1-2273.6	0	+	143699872	143713999	0	6	179,236,52,315,108,633,	0,5138,9393,10116,12601,13494,
#Partially deleted in new
chr1	143743239	143744717	BIG-trx-chr1-2269.4	0	-	143743239	143744717	0	3	54,98,207,	0,961,1271,
#Partially deleted in new
chr1	144274492	144311564	BIG-trx-chr1-2283.1	0	-	144274492	144311564	0	8	2031,108,164,12,92,130,236,139,	0,2810,5094,6125,6606,8543,10129,36933,
#Partially deleted in new
chr1	144275917	144284857	BIG-trx-chr1-2283.2	0	-	144275917	144284857	0	5	606,108,320,52,236,	0,1385,3669,4660,8704,
#Partially deleted in new
chr1	144276397	144311493	BIG-trx-chr1-2283.3	0	-	144276397	144311493	0	5	104,123,320,236,68,	0,890,3189,8224,35028,
#Partially deleted in new
chr1	144276397	144311564	BIG-trx-chr1-2283.4	0	-	144276397	144311564	0	4	126,159,236,139,	0,854,8224,35028,
#Partially deleted in new
chr1	144278170	144284859	BIG-trx-chr1-2283.6	0	-	144278170	144284859	0	3	3020,130,238,	0,4865,6451,
#Partially deleted in new
chr1	144280382	144289980	BIG-trx-chr1-2283.8	0	-	144280382	144289980	0	5	247,139,125,236,184,	0,347,683,4239,9414,
#Partially deleted in new
chr1	144280382	144290308	BIG-trx-chr1-2283.7	0	-	144280382	144290308	0	5	247,139,125,236,101,	0,347,683,4239,9825,
#Partially deleted in new
chr1	144284104	144311653	BIG-trx-chr1-2283.9	0	-	144284104	144311653	0	3	305,236,228,	0,517,27321,
#Partially deleted in new
chr1	144299757	144341756	BIG-trx-chr1-2284.2	0	-	144299757	144341756	0	4	998,56,98,87,	0,1723,40768,41912,
#Partially deleted in new
chr1	144299757	144341057	BIG-trx-chr1-2284.1	0	-	144299757	144341057	0	4	998,56,98,207,	0,1723,40768,41093,
#Partially deleted in new
chr1	144300511	144340671	BIG-trx-chr1-2284.3	0	-	144300511	144340671	0	3	244,347,146,	0,678,40014,
#Partially deleted in new
chr1	144300514	144340736	BIG-trx-chr1-2284.4	0	-	144300514	144340736	0	2	1022,211,	0,40011,
#Partially deleted in new
chr1	144300516	144341057	BIG-trx-chr1-2284.5	0	-	144300516	144341057	0	4	239,466,98,207,	0,554,40009,40334,
#Partially deleted in new
chr1	144314178	144495456	BIG-trx-chr1-2285.1	0	-	144314178	144495456	0	2	310,743,	0,180535,
#Partially deleted in new
chr1	144321240	144502117	BIG-trx-chr1-2286.1	0	-	144321240	144502117	0	2	127,504,	0,180373,
#Partially deleted in new
chr1	144323370	144336254	BIG-trx-chr1-2284.7	0	-	144323370	144336254	0	3	2303,160,26,	0,2655,12858,
#Partially deleted in new
chr1	144323370	144340754	BIG-trx-chr1-2284.6	0	-	144323370	144340754	0	3	2303,160,229,	0,2655,17155,
#Partially deleted in new
chr1	144325551	144340593	BIG-trx-chr1-2284.8	0	-	144325551	144340593	0	4	122,160,55,68,	0,474,14012,14974,
#Partially deleted in new
chr1	144330118	144511712	BIG-trx-chr1-2287.1	0	-	144330118	144511712	0	2	156,1178,	0,180416,
#Partially deleted in new
chr1	144456137	144521291	BIG-trx-chr1-2289.1	0	-	144456137	144521291	0	7	629,108,320,52,236,210,518,	0,1408,3692,4683,8726,13897,64636,
#Partially deleted in new
chr1	144456644	144520983	BIG-trx-chr1-2289.4	0	-	144456644	144520983	0	8	122,52,125,118,236,210,466,210,	0,4176,4664,7889,8219,13390,24655,64129,
#Partially deleted in new
chr1	144479977	144521271	BIG-trx-chr1-2289.9	0	-	144479977	144521271	0	4	1007,56,98,206,	0,1732,40796,41088,
#Partially deleted in new
chr1	144479977	144521970	BIG-trx-chr1-2289.10	0	-	144479977	144521970	0	4	1007,56,98,87,	0,1732,40796,41906,
#Partially deleted in new
chr1	144480740	144520919	BIG-trx-chr1-2289.11	0	-	144480740	144520919	0	3	244,347,146,	0,678,40033,
#Partially deleted in new
chr1	144480743	144520993	BIG-trx-chr1-2289.12	0	-	144480743	144520993	0	2	1022,220,	0,40030,
#Partially deleted in new
chr1	144504811	144516503	BIG-trx-chr1-2289.15	0	-	144504811	144516503	0	3	1114,160,26,	0,1465,11666,
#Partially deleted in new
chr1	144504811	144521002	BIG-trx-chr1-2289.14	0	-	144504811	144521002	0	3	1114,160,229,	0,1465,15962,
#Partially deleted in new
chr1	144505803	144520841	BIG-trx-chr1-2289.16	0	-	144505803	144520841	0	4	122,160,55,68,	0,473,14009,14970,
#Partially deleted in new
chr1	144506090	144520983	BIG-trx-chr1-2289.17	0	-	144506090	144520983	0	3	346,252,210,	0,10387,14683,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145370643	145382462	BIG-trx-chr1-2303.3_TSS.145382462	0	-	145370643	145382462	0	2	5804,4762,	0,7057,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145370643	145382462	BIG-trx-chr1-2303.2_TSS.145382462	0	-	145370643	145382462	0	2	5804,5919,	0,5900,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	145370643	145382375	BIG-trx-chr1-2303.1_TSS.145382375	0	-	145370643	145382375	0	3	2864,1105,4675,	0,4699,7057,
#Partially deleted in new
chr1	145963239	145965730	BIG-lncRNA-85.1	0	+	145963239	145965730	0	2	616,1124,	0,1367,
#Partially deleted in new
chr1	145997687	145999226	BIG-lncRNA-86.1	0	-	145997687	145999226	0	2	394,826,	0,713,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	146853916	146989699	BIG-trx-chr1-2347.1_TSS.146989699	0	-	146853916	146989699	0	4	2669,111,156,434,	0,132241,133427,135349,
#Partially deleted in new
chr1	147668234	147933064	BIG-trx-chr1-2367.2	0	-	147668234	147933064	0	12	324,100,69,32,721,194,305,82,56,160,55,1341,	0,4037,9666,10644,11976,20980,30530,32025,50665,248968,262527,263489,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	147887349	147901508	BIG-trx-chr1-2386.2	0	+	147887349	147901508	0	6	211,236,52,315,108,633,	0,5170,9425,10148,12633,13526,
#Partially deleted in new
chr1	148246958	148248104	BIG-trx-chr1-2391.1	0	-	148246958	148248104	0	2	261,120,	0,1026,
#Boundary problem: need 2, got 0, diff 2, mapped 0.0
chr1	148315893	148320954	BIG-lncRNA-90.1	0	-	148315893	148320954	0	2	76,211,	0,4850,
#Partially deleted in new
chr1	148760503	148761583	BIG-trx-chr1-2399.40	0	+	148760503	148761583	0	2	56,258,	0,822,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	148932784	148933579	BIG-trx-chr1-2406.3	0	+	148932784	148933579	0	2	136,289,	0,506,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	149576593	149581550	BIG-trx-chr1-2433.1	0	-	149576593	149581550	0	5	178,153,55,194,39,	0,323,1014,4210,4918,
#Partially deleted in new
chr1	149672996	149677289	BIG-trx-chr1-2438.1	0	+	149672996	149677289	0	2	1446,544,	0,3749,
#Partially deleted in new
chr1	149691431	149698605	BIG-trx-chr1-2440.1	0	-	149691431	149698605	0	3	215,135,187,	0,1515,6987,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr1	149691472	149699958	BIG-trx-chr1-2440.2	0	-	149691472	149699958	0	5	174,2908,188,52,37,	0,253,6946,8295,8449,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr1	149691472	149698683	BIG-trx-chr1-2440.3	0	-	149691472	149698683	0	3	174,2908,265,	0,253,6946,
#Partially deleted in new
chr1	149691553	149698683	BIG-trx-chr1-2440.4	0	-	149691553	149698683	0	4	93,135,223,265,	0,1393,2857,6865,
#Partially deleted in new
chr1	149691553	149699958	BIG-trx-chr1-2440.5	0	-	149691553	149699958	0	6	93,135,223,188,52,37,	0,1393,2857,6865,8214,8368,
#Partially deleted in new
chr10	46797867	46809021	BIG-trx-chr10-737.1	0	-	46797867	46809021	0	3	833,181,197,	0,1468,10957,
#Partially deleted in new
chr10	46798967	46808991	BIG-trx-chr10-737.2	0	-	46798967	46808991	0	2	549,167,	0,9857,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	47011752	47174018	BIG-trx-chr10-745.1	0	-	47011752	47174018	0	4	1324,123,132,121,	0,61104,139213,162145,
#Partially deleted in new
chr10	47057815	47061083	BIG-lncRNA-1077.1	0	-	47057815	47061083	0	2	1131,2064,	0,1204,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	47058212	47059582	BIG-lncRNA-1078.1_TSS.47058213	0	+	47058212	47059582	0	2	734,563,	0,807,
#Partially deleted in new
chr10	48988120	48989268	BIG-trx-chr10-788.1	0	-	48988120	48989268	0	2	331,160,	0,988,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr10	48988120	48998766	BIG-trx-chr10-788.2	0	-	48988120	48998766	0	3	331,181,197,	0,961,10449,
#Partially deleted in new
chr10	51253786	51262426	BIG-trx-chr10-826.2	0	-	51253786	51262426	0	2	182,378,	0,8262,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr11	45743933	45746102	BIG-trx-chr11-737.4_TSS.45743934	0	+	45743933	45746102	0	3	74,95,391,	0,1094,1778,
#Partially deleted in new
chr12	147072	149346	BIG-trx-chr12-7.1	0	-	147072	149346	0	2	310,295,	0,1979,
#Partially deleted in new
chr12	147947	149350	BIG-trx-chr12-7.2	0	-	147947	149350	0	3	562,205,299,	0,664,1104,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr12	124523992	124573194	BIG-trx-chr12-2127.1	0	+	124523992	124573194	0	2	79,384,	0,48818,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	19625811	19629704	BIG-lncRNA-1327.1	0	+	19625811	19629704	0	2	53,3685,	0,208,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	19642022	19643233	BIG-trx-chr14-55.2	0	+	19642022	19643233	0	2	371,162,	0,1049,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	19812175	19925327	BIG-trx-chr14-65.1	0	+	19812175	19925327	0	6	72,2388,91,136,138,88,	0,44894,82524,106962,107316,113064,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	20006912	20010958	BIG-trx-chr14-68.2	0	+	20006912	20010958	0	2	446,2123,	0,1923,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	23064714	23067855	BIG-trx-chr14-171.1	0	-	23064714	23067855	0	2	397,2276,	0,865,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	74074573	74101139	BIG-trx-chr14-868.1_TSS.74101139	0	-	74074573	74101139	0	2	9341,775,	0,25791,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	74074573	74101139	BIG-trx-chr14-868.2_TSS.74101139	0	-	74074573	74101139	0	3	9341,150,775,	0,11797,25791,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	106744316	106744975	BIG-trx-chr14-1467.2_TSS.106744317	0	+	106744316	106744975	0	2	245,311,	0,348,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	106744316	106744966	BIG-trx-chr14-1467.1_TSS.106744317	0	+	106744316	106744966	0	2	241,328,	0,322,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr15	77330699	77351506	BIG-trx-chr15-1060.1	0	+	77330699	77351506	0	2	47,18785,	0,2022,
#Partially deleted in new
chr17	34510614	34516258	BIG-trx-chr17-942.1	0	+	34510614	34516258	0	3	385,214,460,	0,4575,5184,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	35297345	35300755	BIG-trx-chr17-964.1	0	-	35297345	35300755	0	2	177,369,	0,3041,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	77681118	77686081	BIG-trx-chr17-2068.1_TSS.77681119	0	+	77681118	77686081	0	2	347,3801,	0,1162,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	54703320	54704593	BIG-trx-chr19-2019.1_TSS.54704593	0	-	54703320	54704593	0	2	303,862,	0,411,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr2	19163732	19553536	BIG-trx-chr2-279.5_TSS.19553536_RM	0	-	19163732	19553536	0	9	5414,154,65,99,136,105,4059,130,635,	0,58361,62663,120955,161280,382672,384016,388309,389169,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr2	19163732	19231769	BIG-trx-chr2-279.13	0	-	19163732	19231769	0	5	5414,46,154,65,692,	0,12860,58361,62663,67345,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr2	19163732	19506108	BIG-trx-chr2-279.3	0	-	19163732	19506108	0	7	5414,154,65,99,136,131,249,	0,58361,62663,120955,161280,341851,342127,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr2	19163732	19558384	BIG-trx-chr2-279.11_TSS.19558384_RM	0	-	19163732	19558384	0	9	5414,154,65,99,136,1805,3899,697,283,	0,58361,62663,120955,161280,382672,384540,389169,394369,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr2	19163732	19558384	BIG-trx-chr2-279.7_TSS.19558384_RM	0	-	19163732	19558384	0	10	5414,46,154,65,99,136,1805,3899,697,283,	0,12860,58361,62663,120955,161280,382672,384540,389169,394369,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr2	19163732	19553536	BIG-trx-chr2-279.9_TSS.19553536_RM	0	-	19163732	19553536	0	10	5414,43,153,65,99,136,105,4059,130,635,	0,12864,58362,62663,120955,161280,382672,384016,388309,389169,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr2	19163732	19558624	BIG-trx-chr2-279.1	0	-	19163732	19558624	0	11	5414,49,154,65,99,136,5177,248,697,228,84,	0,12860,58361,62663,120955,161280,382672,388191,389169,394369,394808,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr2	19163732	19553536	BIG-trx-chr2-279.12_TSS.19553536_RM	0	-	19163732	19553536	0	10	5414,49,154,65,99,136,105,4059,130,635,	0,12860,58361,62663,120955,161280,382672,384016,388309,389169,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	75251834	75333327	BIG-lncRNA-201.1	0	+	75251834	75333327	0	3	58,126,1100,	0,12432,80393,
#Partially deleted in new
chr2	87666430	87745527	BIG-lncRNA-209.1	0	-	87666430	87745527	0	2	586,349,	0,78748,
#Partially deleted in new
chr2	91750658	91768922	BIG-trx-chr2-1362.8_TSS.91750659	0	+	91750658	91768922	0	4	379,90,109,1533,	0,3833,15877,16731,
#Partially deleted in new
chr2	91750658	91768922	BIG-trx-chr2-1362.6_TSS.91750659	0	+	91750658	91768922	0	4	379,150,109,1533,	0,3773,15877,16731,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	91750658	91768922	BIG-trx-chr2-1362.3_TSS.91750659	0	+	91750658	91768922	0	4	115,189,6878,1533,	0,213,9108,16731,
#Partially deleted in new
chr2	91750658	91768922	BIG-trx-chr2-1362.2_TSS.91750659	0	+	91750658	91768922	0	4	379,86,109,1533,	0,3833,15877,16731,
#Partially deleted in new
chr2	91750658	91768922	BIG-trx-chr2-1362.1_TSS.91750659	0	+	91750658	91768922	0	4	379,146,109,1533,	0,3773,15877,16731,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	98081082	98091049	BIG-trx-chr2-1474.1	0	-	98081082	98091049	0	4	932,221,130,2280,	0,6949,7465,7687,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	98088088	98091651	BIG-trx-chr2-1474.14	0	-	98088088	98091651	0	2	589,2882,	0,681,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	103489797	103512180	BIG-trx-chr2-1556.1	0	-	103489797	103512180	0	4	242,172,205,89,	0,17924,21234,22294,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	242749409	242751732	BIG-trx-chr2-3352.1_CPS.242749410	0	-	242749409	242751732	0	2	1054,171,	0,2152,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	242749409	242751718	BIG-trx-chr2-3352.2_CPS.242749410	0	-	242749409	242751718	0	3	1054,48,24,	0,2152,2285,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr2	242749409	242754885	BIG-trx-chr2-3352.3_TSS.242754885_CPS.242749410	0	-	242749409	242754885	0	3	1492,771,2087,	0,2132,3389,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr21	17442820	17983097	BIG-trx-chr21-117.1_TSS.17442821_CPS.17983097	0	+	17442820	17983097	0	8	48,285,97,60,49,61,115,3784,	0,613,111090,160555,416989,466878,523839,536493,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr21	22475846	22481815	BIG-lncRNA-1594.1	0	+	22475846	22481815	0	2	19,5732,	0,237,
#Partially deleted in new
chr22	20326327	20350457	BIG-trx-chr22-183.1	0	+	20326327	20350457	0	12	212,59,25,87,66,62,34,2041,73,41,155,435,	0,2192,2719,5689,10678,12744,13271,15525,18099,18398,18901,23695,
#Partially deleted in new
chr22	20329822	20341085	BIG-trx-chr22-184.1	0	-	20329822	20341085	0	3	1216,133,76,	0,1933,11187,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	22390742	22394463	BIG-trx-chr22-262.1	0	+	22390742	22394463	0	2	151,628,	0,3093,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	27053221	27072438	BIG-trx-chr22-417.12_TSS.27053222	0	+	27053221	27072438	0	5	397,83,1406,126,8318,	0,6058,8273,9926,10899,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	27053482	27072438	BIG-trx-chr22-417.15_TSS.27053483	0	+	27053482	27072438	0	5	136,83,1480,126,8318,	0,5797,7938,9665,10638,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	27053482	27072438	BIG-trx-chr22-417.17_TSS.27053483	0	+	27053482	27072438	0	4	136,83,1480,8318,	0,5797,7938,10638,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	27053482	27072438	BIG-trx-chr22-417.14_TSS.27053483	0	+	27053482	27072438	0	4	136,83,1406,8318,	0,5797,8012,10638,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr22	42486948	42535286	BIG-trx-chr22-821.6_TSS.42486949	0	+	42486948	42535286	0	7	237,304,114,516,533,516,2251,	0,352,1174,33103,33931,45259,46087,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	42528032	42531248	BIG-trx-chr22-821.18	0	+	42528032	42531248	0	5	165,233,51,81,105,	0,344,1014,1304,3111,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr22	42528032	42533059	BIG-trx-chr22-821.17	0	+	42528032	42533059	0	8	165,233,51,105,66,84,43,24,	0,344,1014,3111,3654,4175,4648,5003,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	42528649	42535676	BIG-trx-chr22-821.19	0	+	42528649	42535676	0	3	448,516,2641,	0,3558,4386,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	42532441	42535938	BIG-trx-chr22-824.1	0	-	42532441	42535938	0	3	232,119,316,	0,1554,3181,
#Partially deleted in new
chr4	124389	127567	BIG-trx-chr4-4.3_TSS.124390_CPS.127567	0	+	124389	127567	0	2	789,836,	0,2342,
#Partially deleted in new
chr4	124389	157950	BIG-trx-chr4-4.4_TSS.124390_CPS.157950	0	+	124389	157950	0	3	789,280,3249,	0,2342,30312,
#Partially deleted in new
chr4	124389	127567	BIG-trx-chr4-4.1_TSS.124390_CPS.127567	0	+	124389	127567	0	1	3178,	0,
#Partially deleted in new
chr4	75454448	75475972	BIG-trx-chr4-980.1	0	-	75454448	75475972	0	2	379,179,	0,21345,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185278463	185303558	BIG-trx-chr4-2134.1_TSS.185303558	0	-	185278463	185303558	0	6	2591,5607,5983,142,104,271,	0,2729,8515,15029,19131,24824,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr4	185286335	185291024	BIG-trx-chr4-2134.4	0	-	185286335	185291024	0	3	464,123,1458,	0,643,3231,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185286713	185303456	BIG-trx-chr4-2134.5_TSS.185303456	0	-	185286713	185303456	0	6	86,123,139,142,104,169,	0,265,6109,6779,10881,16574,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	87962137	87974262	BIG-trx-chr5-1055.16_TSS.87974262	0	-	87962137	87974262	0	4	1272,50,126,2998,	0,4716,6645,9127,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr5	131646977	131705561	BIG-trx-chr5-1460.1_TSS.131705561	0	-	131646977	131705561	0	8	969,122,142,143,36,93,214,26,	0,20904,23500,38530,48795,53649,55282,58558,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr5	131667881	131695828	BIG-trx-chr5-1460.2	0	-	131667881	131695828	0	5	122,142,143,143,56,	0,2596,17626,20300,27891,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr5	180673508	180684585	BIG-trx-chr5-2306.4_TSS.180673509_CPS.180684585	0	+	180673508	180684585	0	2	374,10470,	0,607,
#Partially deleted in new
chr6	905461	909594	BIG-trx-chr6-22.1	0	-	905461	909594	0	2	2504,32,	0,4101,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr6	68496310	68599061	BIG-trx-chr6-1194.4_TSS.68599061	0	-	68496310	68599061	0	4	15,3679,1854,259,	0,93779,100549,102492,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	68496310	68599061	BIG-trx-chr6-1194.3_TSS.68599061	0	-	68496310	68599061	0	3	15,8624,259,	0,93779,102492,
#Partially deleted in new
chr7	61440576	61623900	BIG-lncRNA-792.1	0	+	61440576	61623900	0	2	19,203,	0,183121,
#Partially deleted in new
chr7	100606877	100612146	BIG-trx-chr7-1400.2_TSS.100612146	0	-	100606877	100612146	0	6	388,122,1095,316,77,821,	0,507,893,2644,3616,4448,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr8	1231511	1232740	BIG-lncRNA-865.1	0	+	1231511	1232740	0	4	544,38,154,184,	0,621,814,1045,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	1981649	1983729	BIG-trx-chr8-39.1	0	+	1981649	1983729	0	2	291,121,	0,1959,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr8	2447075	2480453	BIG-trx-chr8-46.1	0	-	2447075	2480453	0	5	1265,139,80,150,71,	0,5580,6640,14796,33307,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr8	2447075	2480453	BIG-trx-chr8-46.2	0	-	2447075	2480453	0	5	1265,136,80,150,71,	0,5580,6640,14796,33307,
#Partially deleted in new
chr9	39567254	39594768	BIG-lncRNA-965.1	0	+	39567254	39594768	0	7	130,77,201,72,72,596,596,	0,53,8856,22078,22078,26918,26918,
#Partially deleted in new
chr9	41003237	41011633	BIG-lncRNA-969.1	0	+	41003237	41011633	0	2	207,3219,	0,5177,
#Partially deleted in new
chr9	41277732	41298538	BIG-trx-chr9-495.1	0	+	41277732	41298538	0	3	268,107,101,	0,19792,20705,
#Partially deleted in new
chr9	41285356	41287306	BIG-trx-chr9-496.1	0	+	41285356	41287306	0	2	63,1063,	0,887,
#Partially deleted in new
chr9	41306132	41311985	BIG-trx-chr9-497.1	0	-	41306132	41311985	0	2	77,546,	0,5307,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	41313944	41323179	BIG-trx-chr9-498.1	0	+	41313944	41323179	0	2	627,1361,	0,7874,
#Partially deleted in new
chr9	43144979	43160008	BIG-trx-chr9-546.1	0	-	43144979	43160008	0	3	588,224,145,	0,6805,14884,
#Partially deleted in new
chr9	43374030	43383211	BIG-lncRNA-977.1	0	+	43374030	43383211	0	2	15,3278,	0,5903,
#Partially deleted in new
chr9	44157461	44243038	BIG-lncRNA-979.1	0	-	44157461	44243038	0	2	11,1630,	0,83947,
#Partially deleted in new
chr9	44256579	44263319	BIG-trx-chr9-571.1	0	-	44256579	44263319	0	3	238,88,2898,	0,3472,3842,
#Partially deleted in new
chr9	44384584	44391705	BIG-trx-chr9-574.1	0	+	44384584	44391705	0	3	2899,86,629,	0,3183,6492,
#Partially deleted in new
chr9	44393181	44393663	BIG-lncRNA-980.1	0	-	44393181	44393663	0	2	99,125,	0,357,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	44471543	44481197	BIG-lncRNA-981.1	0	-	44471543	44481197	0	2	1777,85,	0,9569,
#Partially deleted in new
chr9	44506154	44506618	BIG-lncRNA-982.1	0	-	44506154	44506618	0	2	215,135,	0,329,
#Partially deleted in new
chr9	45420520	45496672	BIG-trx-chr9-606.1	0	+	45420520	45496672	0	5	26,30,28337,719,7934,	0,21625,35821,67352,68218,
#Partially deleted in new
chr9	45570338	45572871	BIG-lncRNA-984.1	0	+	45570338	45572871	0	2	1087,684,	0,1849,
#Partially deleted in new
chr9	45755236	45755894	BIG-lncRNA-985.1	0	+	45755236	45755894	0	2	163,401,	0,257,
#Partially deleted in new
chr9	46202361	46302282	BIG-trx-chr9-624.1	0	-	46202361	46302282	0	2	44,501,	0,99420,
#Partially deleted in new
chr9	46270840	46274928	BIG-trx-chr9-626.1	0	-	46270840	46274928	0	3	323,122,431,	0,413,3657,
#Partially deleted in new
chr9	46271198	46391110	BIG-trx-chr9-626.2	0	-	46271198	46391110	0	3	177,140,307,	0,58197,119605,
#Partially deleted in new
chr9	46273488	46274899	BIG-trx-chr9-626.3	0	-	46273488	46274899	0	2	177,402,	0,1009,
#Partially deleted in new
chr9	65487272	65494248	BIG-trx-chr9-654.1	0	-	65487272	65494248	0	2	1100,622,	0,6354,
#Partially deleted in new
chr9	65488295	65494240	BIG-trx-chr9-654.2	0	-	65488295	65494240	0	3	77,84,614,	0,405,5331,
#Partially deleted in new
chr9	65827251	66042796	BIG-trx-chr9-660.1	0	-	65827251	66042796	0	2	19,73,	0,215472,
#Partially deleted in new
chr9	67678351	67679798	BIG-lncRNA-1001.1	0	-	67678351	67679798	0	2	703,50,	0,1397,
#Partially deleted in new
chr9	67896946	68157266	BIG-lncRNA-1002.1	0	+	67896946	68157266	0	4	76,183,74,35,	0,248088,253155,260285,
#Partially deleted in new
chrX	1130519	1260182	BIG-lncRNA-1651.1	0	-	1130519	1260182	0	3	24,128,88,	0,129205,129575,
#Partially deleted in new
chrX	48814935	48818045	BIG-lncRNA-1676.1_TSS.48814936_CPS.48818045	0	+	48814935	48818045	0	3	42,3110,2750,	0,0,360,
#Partially deleted in new
chrX	48814935	48817031	BIG-lncRNA-1676.1_TSS.48814936_CPS.48817031	0	+	48814935	48817031	0	3	2096,42,1736,	0,0,360,
#Partially deleted in new
chrX	49180916	49367407	BIG-lncRNA-1677.1	0	+	49180916	49367407	0	2	1201,169,	0,186322,
#Boundary problem: need 8, got 6, diff 2, mapped 0.8
chrX	148609133	148622358	BIG-trx-chrX-1682.95_TSS.148622358	0	-	148609133	148622358	0	8	792,43,236,818,146,58,183,1098,	0,4411,5221,6031,10031,10513,11123,12127,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	151876409	151882220	BIG-trx-chrX-1732.5	0	-	151876409	151882220	0	3	713,778,476,	0,871,5335,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	151876409	151883060	BIG-trx-chrX-1732.3	0	-	151876409	151883060	0	4	713,778,60,83,	0,871,5335,6568,