# gffcompare v0.10.1 | Command line was:
#/users/rg/buszczynska/bin/gffcompare/gffcompare -N -M -r gen.lncRNAs.hg38.gtf cls.lncRNAs.hg38.gtf -o cls.genOverlap
#

#= Summary for dataset: cls.lncRNAs.hg38.gtf 
#     Query mRNAs :   41753 in   11571 loci  (41753 multi-exon transcripts)
#            (4941 multi-transcript loci, ~3.6 transcripts per locus)
# Reference mRNAs :   23945 in   12185 loci  (23945 multi-exon)
# Super-loci w/ reference transcripts:    10782
#-----------------| Sensitivity | Precision  |
        Base level:    88.0     |    75.9    |
        Exon level:    88.8     |    69.2    |
      Intron level:    86.5     |    62.1    |
Intron chain level:    86.4     |    49.5    |
  Transcript level:    86.4     |    49.5    |
       Locus level:    93.8     |    95.8    |

     Matching intron chains:   20679
       Matching transcripts:   20679
              Matching loci:   11425

          Missed exons:    5915/64307	(  9.2%)
           Novel exons:   17008/94134	( 18.1%)
        Missed introns:    3890/41633	(  9.3%)
         Novel introns:    6808/58019	( 11.7%)
           Missed loci:     691/12185	(  5.7%)
            Novel loci:     430/11571	(  3.7%)

 Total union super-loci across all input datasets: 11519 
41753 out of 41753 consensus transcripts written in cls.genOverlap.annotated.gtf (0 discarded as redundant)