# gffcompare v0.10.1 | Command line was:
#/users/rg/buszczynska/bin/gffcompare/gffcompare -N -M -r gen.lncRNAs.hg38.gtf clsFL.lncRNAs.hg38.gtf -o clsFL.genOverlap
#

#= Summary for dataset: clsFL.lncRNAs.hg38.gtf 
#     Query mRNAs :    4452 in     812 loci  (4452 multi-exon transcripts)
#            (477 multi-transcript loci, ~5.5 transcripts per locus)
# Reference mRNAs :   23945 in   12185 loci  (23945 multi-exon)
# Super-loci w/ reference transcripts:      757
#-----------------| Sensitivity | Precision  |
        Base level:     5.2     |    52.5    |
        Exon level:     5.9     |    50.0    |
      Intron level:     5.5     |    34.2    |
Intron chain level:     0.2     |     1.1    |
  Transcript level:     0.2     |     1.1    |
       Locus level:     0.2     |     3.4    |

     Matching intron chains:      48
       Matching transcripts:      48
              Matching loci:      28

          Missed exons:   57658/64307	( 89.7%)
           Novel exons:    2387/9382	( 25.4%)
        Missed introns:   36132/41633	( 86.8%)
         Novel introns:    1004/6708	( 15.0%)
           Missed loci:   11285/12185	( 92.6%)
            Novel loci:      46/812	(  5.7%)

 Total union super-loci across all input datasets: 804 
4452 out of 4452 consensus transcripts written in clsFL.genOverlap.annotated.gtf (0 discarded as redundant)