# gffcompare v0.10.1 | Command line was:
#/users/rg/buszczynska/bin/gffcompare/gffcompare -N -M -r gen.lncRNAs.hg38.gtf fantomCat.lncRNAs.hg38.gtf -o fantomCat.genOverlap
#

#= Summary for dataset: fantomCat.lncRNAs.hg38.gtf 
#     Query mRNAs :   60170 in   16775 loci  (60170 multi-exon transcripts)
#            (10099 multi-transcript loci, ~3.6 transcripts per locus)
# Reference mRNAs :   23945 in   12185 loci  (23945 multi-exon)
# Super-loci w/ reference transcripts:     6686
#-----------------| Sensitivity | Precision  |
        Base level:    61.4     |    10.3    |
        Exon level:    50.0     |    24.0    |
      Intron level:    56.3     |    27.1    |
Intron chain level:    47.8     |    19.0    |
  Transcript level:    47.8     |    19.0    |
       Locus level:    48.6     |    34.4    |

     Matching intron chains:   11445
       Matching transcripts:   11445
              Matching loci:    5918

          Missed exons:   22419/64307	( 34.9%)
           Novel exons:   70300/125940	( 55.8%)
        Missed introns:   12756/41633	( 30.6%)
         Novel introns:   43292/86655	( 50.0%)
           Missed loci:    4640/12185	( 38.1%)
            Novel loci:    9625/16775	( 57.4%)

 Total union super-loci across all input datasets: 16672 
60170 out of 60170 consensus transcripts written in fantomCat.genOverlap.annotated.gtf (0 discarded as redundant)