#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	10442189	10458888	ENCT00000021571.1	0	-	10442189	10458888	0	2	3854,12016,	0,4683,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	12585777	12599887	HBMT00000004546.1	0	+	12585777	12599887	0	3	266,348,11796,	0,1709,2314,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	12585777	12599887	HBMT00000004545.1	0	+	12585777	12599887	0	4	266,348,379,9492,	0,1709,2314,4618,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	12585777	12603518	ENCT00000001608.1	0	+	12585777	12603518	0	4	266,348,1031,13123,	0,1709,2314,4618,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	12585777	12599887	HBMT00000004547.1	0	+	12585777	12599887	0	2	266,12401,	0,1709,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr1	17698690	17728195	ENST00000434762.2	0	+	17698690	17728195	0	16	166,178,73,68,118,126,179,104,113,108,155,157,124,71,162,495,	0,860,3231,7724,8851,9771,16185,16581,19918,21780,22105,22756,23345,24876,26491,29010,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr1	17698690	17728195	ENST00000358481.5	0	+	17698690	17728195	0	17	166,178,73,68,118,126,179,104,64,48,108,155,157,124,71,162,495,	0,860,3231,7724,8851,9771,16185,16581,19918,19983,21780,22105,22756,23345,24876,26491,29010,
#Partially deleted in new
chr1	103803463	104068124	MICT00000016316.1	0	-	103803463	104068124	0	5	169,87,206,51,107,	0,168445,172049,208500,264554,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	121484150	121485436	MICT00000018636.1	0	+	121484150	121485436	0	2	44,223,	0,1063,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	121484331	121485462	ENCT00000010716.1	0	+	121484331	121485462	0	2	3,787,	0,344,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	121484458	121485436	MICT00000018640.1	0	+	121484458	121485436	0	2	586,52,	0,926,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	143267166	143275060	FTMT20100060737.1	0	-	143267166	143275060	0	3	322,75,213,	0,7560,7681,
#Partially deleted in new
chr1	143273425	143275060	ENCT00000031047.1	0	-	143273425	143275060	0	1	1635,	0,
#Partially deleted in new
chr1	143647638	143744472	ENST00000445753.1	0	-	143647638	143744472	0	4	392,109,1499,272,	0,6323,15059,96562,
#Partially deleted in new
chr1	143719865	143744472	ENCT00000031102.1	0	-	143719865	143744472	0	2	90,272,	0,24335,
#Partially deleted in new
chr1	143726397	143744472	FTMT20100020093.1	0	-	143726397	143744472	0	2	3464,272,	0,17803,
#Partially deleted in new
chr1	143742912	143744001	ENCT00000031117.1	0	-	143742912	143744001	0	1	1089,	0,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	143743239	143744472	ENST00000418192.1	0	-	143743239	143744472	0	2	54,272,	0,961,
#Partially deleted in new
chr1	143743756	143744001	FTMT20100089218.1	0	-	143743756	143744001	0	2	75,156,	0,89,
#Partially deleted in new
chr1	144456137	144520985	ENST00000430014.1	0	-	144456137	144520985	0	7	629,108,320,52,236,210,212,	0,1408,3692,4683,8726,13897,64636,
#Partially deleted in new
chr1	144456644	144520985	ENST00000437785.1	0	-	144456644	144520985	0	8	122,52,125,118,236,210,466,212,	0,4176,4664,7889,8219,13390,24655,64129,
#Partially deleted in new
chr1	144460572	144521062	FTMT20100110187.1	0	-	144460572	144521062	0	5	300,461,236,187,289,	0,400,4291,21006,60201,
#Partially deleted in new
chr1	144460572	144521062	FTMT20100110185.1	0	-	144460572	144521062	0	4	300,236,187,289,	0,4291,21006,60201,
#Partially deleted in new
chr1	144460572	144521062	FTMT20100110186.1	0	-	144460572	144521062	0	5	300,125,236,187,289,	0,736,4291,21006,60201,
#Partially deleted in new
chr1	144480398	144521062	ENCT00000031159.1	0	-	144480398	144521062	0	3	586,187,289,	0,1180,40375,
#Partially deleted in new
chr1	144480619	144521062	FTMT20100033097.1	0	-	144480619	144521062	0	3	365,347,289,	0,799,40154,
#Partially deleted in new
chr1	144480619	144520985	FTMT20100009938.1	0	-	144480619	144520985	0	4	365,187,62,212,	0,959,4545,40154,
#Partially deleted in new
chr1	144480740	144520985	ENST00000411760.1	0	-	144480740	144520985	0	3	244,347,212,	0,678,40033,
#Partially deleted in new
chr1	144480743	144520985	ENST00000442509.1	0	-	144480743	144520985	0	2	1022,212,	0,40030,
#Partially deleted in new
chr1	144481554	144521245	ENST00000414344.1	0	-	144481554	144521245	0	3	211,98,180,	0,39219,39511,
#Partially deleted in new
chr1	144502993	144520985	FTMT20100020100.1	0	-	144502993	144520985	0	2	3443,212,	0,17780,
#Partially deleted in new
chr1	144505803	144520985	ENST00000435404.1	0	-	144505803	144520985	0	4	122,160,55,212,	0,473,14009,14970,
#Partially deleted in new
chr1	144506276	144520985	ENST00000411941.1	0	-	144506276	144520985	0	2	160,212,	0,14497,
#Partially deleted in new
chr1	144516418	144520985	ENST00000458262.1	0	-	144516418	144520985	0	2	311,212,	0,4355,
#Partially deleted in new
chr1	144572592	144573932	FTMT20400005990.1	0	+	144572592	144573932	0	1	1340,	0,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	144572592	144576742	MICT00000018990.1	0	+	144572592	144576742	0	4	260,110,161,399,	0,2510,2768,3751,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	144693999	144710723	MICT00000019111.1	0	+	144693999	144710723	0	2	544,15876,	0,848,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr1	144693999	144710723	MICT00000019110.1	0	+	144693999	144710723	0	4	544,2748,2011,10412,	0,848,4140,6312,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr1	144693999	144710723	MICT00000019112.1	0	+	144693999	144710723	0	1	16724,	0,
#Partially deleted in new
chr1	145096407	145100969	ENCT00000011102.1	0	+	145096407	145100969	0	2	214,278,	0,4284,
#Partially deleted in new
chr1	145096407	145118922	HBMT00000026935.1	0	+	145096407	145118922	0	5	214,44,161,147,3188,	0,7566,13116,15965,19327,
#Partially deleted in new
chr1	145096407	145116922	ENST00000453618.1	0	+	145096407	145116922	0	5	214,110,161,147,1188,	0,7500,13116,15965,19327,
#Partially deleted in new
chr1	145096407	145119134	HBMT00000026941.1	0	+	145096407	145119134	0	6	214,110,161,147,197,6,	0,7500,13116,15965,19327,22721,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr1	145096407	145119194	ENCT00000011108.1	0	+	145096407	145119194	0	3	214,2996,3460,	0,13116,19327,
#Partially deleted in new
chr1	145096494	145118922	HBMT00000026945.1	0	+	145096494	145118922	0	4	559,110,161,1565,	0,7413,13029,20863,
#Partially deleted in new
chr1	145096494	145100969	ENCT00000011111.1	0	+	145096494	145100969	0	2	559,278,	0,4197,
#Partially deleted in new
chr1	145096519	145100984	ENST00000500203.2	0	+	145096519	145100984	0	3	102,55,293,	0,3686,4172,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145199584	145208963	MICT00000019217.1	0	-	145199584	145208963	0	2	2935,113,	0,9266,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145202140	145208963	FTMT20100041622.1	0	-	145202140	145208963	0	2	379,113,	0,6710,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	146644357	146652026	FTMT20300018721.1	0	+	146644357	146652026	0	3	781,162,2555,	0,1645,5114,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	146647545	146652026	FTMT20300063363.1	0	+	146647545	146652026	0	2	331,2555,	0,1926,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	146852472	146989699	MICT00000019703.1	0	-	146852472	146989699	0	5	1810,112,111,156,434,	0,4001,133685,134871,136793,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	146853354	146989699	HBMT00000072552.1	0	-	146853354	146989699	0	5	2417,196,111,156,434,	0,3035,132803,133989,135911,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	146854528	146989699	FTMT20100068309.1	0	-	146854528	146989699	0	5	1243,196,111,156,618,	0,1861,131629,132815,134553,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	146856249	146989699	FTMT20100052135.1	0	-	146856249	146989699	0	4	336,111,156,1489,	0,129908,131094,131961,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	146986157	146989699	ENST00000437831.1	0	-	146986157	146989699	0	3	111,156,434,	0,1186,3108,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	146988472	146989699	FTMT20100059280.1	0	-	146988472	146989699	0	2	286,724,	0,503,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	147142816	147171418	MICT00000019742.1	0	+	147142816	147171418	0	4	248,1705,240,347,	0,364,26913,28255,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	147751405	147770524	ENCT00000011472.1	0	+	147751405	147770524	0	4	257,226,59,6239,	0,8390,8706,12880,
#Boundary problem: need 8, got 6, diff 2, mapped 0.8
chr1	147805608	147932058	MICT00000019873.1	0	-	147805608	147932058	0	8	2435,169,161,704,11170,109,319,335,	0,10732,11724,12029,18740,35854,45771,126115,
#Partially deleted in new
chr1	147835126	147932058	ENST00000381475.3	0	-	147835126	147932058	0	4	392,109,1499,335,	0,6336,15073,96597,
#Partially deleted in new
chr1	147907191	147932058	FTMT20100006033.1	0	-	147907191	147932058	0	2	273,335,	0,24532,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	147913905	147932058	FTMT20100020125.1	0	-	147913905	147932058	0	2	3457,335,	0,17818,
#Partially deleted in new
chr1	147916089	147932058	ENCT00000031585.1	0	-	147916089	147932058	0	2	1273,335,	0,15634,
#Partially deleted in new
chr1	147930761	147932058	ENST00000417554.1	0	-	147930761	147932058	0	2	55,335,	0,962,
#Partially deleted in new
chr1	147930905	147932058	FTMT20100110643.1	0	-	147930905	147932058	0	3	8,283,690,	0,166,463,
#Partially deleted in new
chr1	148003315	148262284	ENCT00000031594.1	0	-	148003315	148262284	0	3	1143,479,27,	0,248324,258942,
#Partially deleted in new
chr1	148003315	148262284	ENCT00000031595.1	0	-	148003315	148262284	0	3	486,991,27,	0,247812,258942,
#Partially deleted in new
chr1	148176221	148176466	FTMT20200006710.1	0	-	148176221	148176466	0	1	245,	0,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	148240130	148241063	FTMT20100006039.1	0	-	148240130	148241063	0	2	31,584,	0,349,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr1	148240651	148241063	ENCT00000031621.1	0	-	148240651	148241063	0	1	412,	0,
#Partially deleted in new
chr1	148246958	148248105	ENST00000427732.1	0	-	148246958	148248105	0	2	261,121,	0,1026,
#Partially deleted in new
chr1	148255292	148262284	FTMT20100095271.1	0	-	148255292	148262284	0	4	21,641,111,848,	0,629,2893,6144,
#Partially deleted in new
chr1	148257550	148262284	FTMT20100050450.1	0	-	148257550	148262284	0	4	52,173,52,828,	0,766,3135,3906,
#Partially deleted in new
chr1	148349023	148352364	FTMT20200006744.1	0	-	148349023	148352364	0	1	3341,	0,
#Partially deleted in new
chr1	148351709	148352364	FTMT20100042828.1	0	-	148351709	148352364	0	3	84,97,81,	0,391,574,
#Partially deleted in new
chr1	148760486	148761652	FTMT20300004123.1	0	+	148760486	148761652	0	2	73,324,	0,842,
#Partially deleted in new
chr1	148760486	148761583	ENST00000455105.1	0	+	148760486	148761583	0	2	73,258,	0,839,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149223123	149226304	ENCT00000011616.1	0	+	149223123	149226304	0	3	53,964,1886,	0,316,1295,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149223123	149225737	MICT00000020098.1	0	+	149223123	149225737	0	3	18,1445,746,	0,316,1868,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	149224609	149515129	ENCT00000011617.1	0	+	149224609	149515129	0	2	476,15,	0,290505,
#Partially deleted in new
chr1	149230696	149576050	FTMT20300026006.1	0	+	149230696	149576050	0	3	77,155,845,	0,342067,344509,
#Partially deleted in new
chr1	149575434	149575767	ENST00000596960.1	0	+	149575434	149575767	0	1	333,	0,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	149576502	149577345	MICT00000020192.1	0	-	149576502	149577345	0	2	325,429,	0,414,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	149576593	149577345	ENST00000447883.2	0	-	149576593	149577345	0	2	178,429,	0,323,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149605692	149633208	ENST00000414422.1	0	+	149605692	149633208	0	3	175,236,305,	0,26763,27211,
#Partially deleted in new
chr1	149605723	149616795	ENCT00000011676.1	0	+	149605723	149616795	0	3	144,187,250,	0,10041,10822,
#Partially deleted in new
chr1	149647928	149719514	FTMT20100054769.1	0	-	149647928	149719514	0	4	1306,52,236,1065,	0,51839,52987,70521,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr1	149690255	149719514	MICT00000020236.1	0	-	149690255	149719514	0	4	2826,188,236,294,	0,8163,10660,28965,
#Partially deleted in new
chr1	149690255	149719514	MICT00000020230.1	0	-	149690255	149719514	0	6	8352,52,125,236,538,271,	0,9512,9666,10660,28194,28988,
#Boundary problem: need 6, got 3, diff 3, mapped 0.5
chr1	149690255	149719514	MICT00000020238.1	0	-	149690255	149719514	0	6	1391,2908,188,52,236,294,	0,1470,8163,9512,10660,28965,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149690255	149719514	MICT00000020237.1	0	-	149690255	149719514	0	4	1391,52,236,294,	0,9512,10660,28965,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	149909481	149912249	MICT00000020358.1	0	+	149909481	149912249	0	2	102,2436,	0,332,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	174965727	174968759	HBMT00000081029.1	0	-	174965727	174968759	0	2	1143,978,	0,2054,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	174967885	174968759	FTMT20100006267.1	0	-	174967885	174968759	0	2	214,605,	0,269,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	206282650	206306134	MICT00000029082.1	0	-	206282650	206306134	0	4	3670,1241,260,66,	0,4458,6716,23418,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr1	235242210	235243005	FTMT20200013000.1	0	-	235242210	235243005	0	1	795,	0,
#Partially deleted in new
chr10	47020618	47023430	ENCT00000055032.1	0	-	47020618	47023430	0	1	2812,	0,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr10	47088702	47151316	MICT00000041255.1	0	-	47088702	47151316	0	5	3115,5843,424,143,351,	0,4104,10588,32418,62263,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr10	47088702	47151348	MICT00000041262.1	0	-	47088702	47151348	0	3	11012,143,383,	0,32418,62263,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr10	47088836	47143382	ENCT00000055047.1	0	-	47088836	47143382	0	9	9813,119,127,1876,1768,1833,756,3047,1744,	0,10454,10751,32284,45279,47073,48973,49747,52802,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	47088836	47143382	ENCT00000055048.1	0	-	47088836	47143382	0	6	9813,119,127,144,19626,1736,	0,10454,10751,32284,33168,52810,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	49195536	49199813	MICT00000041586.1	0	-	49195536	49199813	0	2	769,3142,	0,1135,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr10	97889478	97920530	ENST00000316045.5	0	+	97889478	97920530	0	8	271,85,66,151,51,124,2453,429,	0,2864,3861,21694,25604,26202,28168,30623,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	97889478	97922185	FTMT23900028987.1	0	+	97889478	97922185	0	4	271,2704,722,6232,	0,2864,25604,26475,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr10	97889478	97923508	ENST00000534948.1	0	+	97889478	97923508	0	7	271,85,93,151,124,4146,3407,	0,2864,3834,21694,26202,26475,30623,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	97889478	97921385	FTMT23900024227.1	0	+	97889478	97921385	0	6	271,85,66,51,124,5359,	0,2864,3861,25604,26202,26548,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	97889478	97922498	ENST00000567632.1	0	+	97889478	97922498	0	6	271,85,93,151,124,6545,	0,2864,3834,21694,26202,26475,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	97889813	97922771	FTMT23900029301.1	0	+	97889813	97922771	0	6	50,85,66,51,124,6818,	0,2529,3526,25269,25867,26140,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	97889813	97922185	FTMT23900020677.1	0	+	97889813	97922185	0	6	62,85,3325,51,124,6232,	0,2529,3499,25269,25867,26140,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	97889813	97928251	MICT00000046664.1	0	+	97889813	97928251	0	6	696,85,66,73,124,12298,	0,2529,3526,25269,25867,26140,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr10	97890053	97922771	FTMT23900041985.1	0	+	97890053	97922771	0	3	456,1063,7689,	0,2289,25029,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	97890053	97922771	FTMT23900006320.1	0	+	97890053	97922771	0	6	456,85,93,51,124,6818,	0,2289,3259,25029,25627,25900,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr10	97890053	97922771	FTMT23900005758.1	0	+	97890053	97922771	0	7	456,85,66,151,51,124,6818,	0,2289,3286,21119,25029,25627,25900,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	97890276	97922771	FTMT23900028843.1	0	+	97890276	97922771	0	6	233,85,66,73,124,6818,	0,2066,3063,24806,25404,25677,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	97890276	97928251	MICT00000046665.1	0	+	97890276	97928251	0	6	233,85,66,73,522,12298,	0,2066,3063,24806,25006,25677,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	97890276	97923167	FTMT23900006479.1	0	+	97890276	97923167	0	6	303,85,66,51,124,7214,	0,2066,3063,24806,25404,25677,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr10	97890276	97922771	FTMT23900010856.1	0	+	97890276	97922771	0	5	233,85,66,124,6818,	0,2066,3063,25404,25677,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr10	97891235	97922440	FTMT23900009408.1	0	+	97891235	97922440	0	7	121,85,66,151,51,124,6487,	0,1107,2104,19937,23847,24445,24718,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr10	97892254	97922185	FTMT23900020679.1	0	+	97892254	97922185	0	5	173,3298,51,124,6232,	0,1085,22828,23426,23699,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	97892254	97922471	FTMT23900005759.1	0	+	97892254	97922471	0	4	1151,151,722,6518,	0,18918,22828,23699,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	97893354	97922204	FTMT23900015259.1	0	+	97893354	97922204	0	4	1692,51,124,6251,	0,21728,22326,22599,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	97894764	97922185	FTMT23900030335.1	0	+	97894764	97922185	0	4	282,73,124,6232,	0,20318,20916,21189,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr10	97894764	97963733	FTMT23900037105.1	0	+	97894764	97963733	0	5	282,51,124,4205,58,	0,20318,20916,21189,68911,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	97894764	97922185	FTMT23900029757.1	0	+	97894764	97922185	0	4	282,51,124,6159,	0,20318,20916,21262,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	97902863	97922185	FTMT23900023355.1	0	+	97902863	97922185	0	4	17,51,124,6232,	0,12219,12817,13090,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	97908790	97922185	FTMT23900004390.1	0	+	97908790	97922185	0	2	2533,7103,	0,6292,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr10	97914079	97922185	FTMT23900034183.1	0	+	97914079	97922185	0	3	1076,124,6159,	0,1601,1947,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	97915107	97963733	FTMT23900041989.1	0	+	97915107	97963733	0	4	48,124,4205,58,	0,573,846,48568,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	97915107	97923517	ENST00000371192.1	0	+	97915107	97923517	0	2	697,7564,	0,846,
#Boundary problem: need 30, got 29, diff 1, mapped 1.0
chr11	7685561	7927801	MICT00000054263.1	0	-	7685561	7927801	0	30	1216,100,86,84,130,107,73,144,268,1517,85,168,90,727,131,104,37,125,3777,152,96,173,92,110,77,165,61,118,74,652,	0,2120,3397,4147,4874,5294,8120,8417,9895,12817,14518,21795,25593,26938,30727,31239,31659,32450,32694,37309,37701,38142,39683,40550,214992,215580,217074,217941,218845,241588,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr11	13984269	14289430	ENST00000533633.1	0	+	13984269	14289430	0	16	420,107,134,74,122,149,65,202,141,76,183,171,168,165,264,2361,	0,20124,78798,112622,117176,172696,280608,291804,292923,293893,294992,296556,296810,297864,299988,302800,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr11	14096801	14157819	FTMT24300006231.1	0	+	14096801	14157819	0	3	164,122,854,	0,4644,60164,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr11	14096801	14143173	FTMT24300004081.1	0	+	14096801	14143173	0	3	164,122,33,	0,4644,46339,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr11	45743918	45746102	ENST00000530051.1	0	+	45743918	45746102	0	3	89,95,391,	0,1109,1793,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr11	57405848	57422868	HBMT00000216208.1	0	+	57405848	57422868	0	2	297,5098,	0,11922,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr11	67790885	67797901	ENCT00000079827.1	0	-	67790885	67797901	0	3	2699,1667,690,	0,4335,6326,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr11	102733466	102745712	ENST00000532855.1	0	-	102733466	102745712	0	10	465,107,160,134,124,161,126,149,248,147,	0,1410,3040,3579,4534,5172,8857,9067,10128,12099,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr11	102733475	102745712	ENST00000326227.5	0	-	102733475	102745712	0	11	456,107,160,134,124,157,6,125,149,248,147,	0,1401,3031,3570,4525,5163,8839,8849,9058,10119,12090,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr13	114631280	114639950	MICT00000099937.1	0	+	114631280	114639950	0	3	464,629,6430,	0,1369,2240,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr13	114631280	114639950	MICT00000099938.1	0	+	114631280	114639950	0	2	464,7301,	0,1369,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	22882258	22901743	MICT00000100948.1	0	-	22882258	22901743	0	2	5667,86,	0,19399,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	22882258	22901743	MICT00000100947.1	0	-	22882258	22901743	0	3	5667,134,86,	0,14422,19399,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	23062748	23072365	MICT00000101023.1	0	-	23062748	23072365	0	2	2368,7038,	0,2579,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	23062748	23072365	MICT00000101022.1	0	-	23062748	23072365	0	2	2368,7103,	0,2514,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	23062748	23072365	MICT00000101021.1	0	-	23062748	23072365	0	2	2368,6782,	0,2835,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	23064714	23067860	ENST00000536432.2	0	-	23064714	23067860	0	2	397,2281,	0,865,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	72533236	72633083	ENCT00000127530.1	0	+	72533236	72633083	0	2	6359,93352,	0,6495,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	74015779	74100639	FTMT25300042495.1	0	-	74015779	74100639	0	2	77,275,	0,84585,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	74072295	74101139	ENCT00000135575.1	0	-	74072295	74101139	0	2	11620,774,	0,28070,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	74072295	74101139	ENCT00000135573.1	0	-	74072295	74101139	0	3	11619,150,714,	0,14075,28130,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	74072295	74101139	ENCT00000135574.1	0	-	74072295	74101139	0	2	11619,775,	0,28069,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	74079540	74101139	MICT00000107148.1	0	-	74079540	74101139	0	3	4374,150,775,	0,6830,20824,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	74079540	74101139	MICT00000107149.1	0	-	74079540	74101139	0	2	4374,775,	0,20824,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	74086393	74100639	ENST00000555500.1	0	-	74086393	74100639	0	2	127,275,	0,13971,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	106471275	106477985	FTMT25500000489.1	0	+	106471275	106477985	0	3	407,108,131,	0,6370,6579,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr14	106471275	106472583	FTMT25600004724.1	0	+	106471275	106472583	0	1	1308,	0,
#Partially deleted in new
chr14	106556337	106562109	FTMT25600004738.1	0	+	106556337	106562109	0	1	5772,	0,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	106653362	106666933	MICT00000112154.1	0	+	106653362	106666933	0	4	311,3445,76,4213,	0,2325,8356,9358,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	106653362	106666933	MICT00000112152.1	0	+	106653362	106666933	0	4	311,3259,76,4213,	0,2511,8356,9358,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	106692296	106692993	MICT00000112165.1	0	+	106692296	106692993	0	2	57,512,	0,185,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	106744205	106745541	MICT00000112169.1	0	+	106744205	106745541	0	2	356,877,	0,459,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	106744205	106745541	MICT00000112170.1	0	+	106744205	106745541	0	2	352,877,	0,459,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	106744316	106744966	ENST00000415154.1	0	+	106744316	106744966	0	2	241,328,	0,322,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	106744316	106744926	ENST00000458560.1	0	+	106744316	106744926	0	2	245,262,	0,348,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	106744316	106744975	ENST00000598484.1	0	+	106744316	106744975	0	2	245,311,	0,348,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr15	22156950	22385577	MICT00000112594.1	0	+	22156950	22385577	0	8	329,140,109,95,96,89,204,3114,	0,2164,132666,161926,189721,190321,190632,225513,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr15	22156950	22160590	HBMT00000479283.1	0	+	22156950	22160590	0	2	329,1702,	0,1938,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr15	22156950	22385577	MICT00000112593.1	0	+	22156950	22385577	0	8	329,140,109,95,92,89,204,3114,	0,2164,132666,161926,189721,190321,190632,225513,
#Partially deleted in new
chr15	23378453	23682859	MICT00000112831.1	0	+	23378453	23682859	0	5	345,227,125,1123,1553,	0,12221,12540,14031,302853,
#Partially deleted in new
chr15	23378453	23682859	MICT00000112832.1	0	+	23378453	23682859	0	5	345,108,178,125,2681,	0,297534,299969,300239,301725,
#Partially deleted in new
chr15	23378453	23682859	MICT00000112833.1	0	+	23378453	23682859	0	5	345,178,125,1123,1553,	0,12270,12540,14031,302853,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr15	72102894	72107270	ENST00000398840.2	0	+	72102894	72107270	0	8	307,127,104,222,176,201,46,918,	0,928,1211,1400,1781,2834,3036,3458,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr15	72102894	72110603	FTMT25900039145.1	0	+	72102894	72110603	0	7	307,127,104,222,1301,106,711,	0,928,1211,1400,1781,3458,6998,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr15	72102894	72120371	HBMT00000487884.1	0	+	72102894	72120371	0	7	1055,104,222,176,248,106,10479,	0,1211,1400,1781,2834,3458,6998,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr15	72102894	72107270	ENST00000562839.1	0	+	72102894	72107270	0	7	307,127,104,222,176,248,918,	0,928,1211,1400,1781,2834,3458,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr15	72102894	72110585	ENST00000562925.1	0	+	72102894	72110585	0	7	1055,104,222,176,248,106,693,	0,1211,1400,1781,2834,3458,6998,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr15	72102894	72110600	ENST00000567496.1	0	+	72102894	72110600	0	8	307,127,104,222,176,248,106,708,	0,928,1211,1400,1781,2834,3458,6998,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr15	72102894	72119660	MICT00000119006.1	0	+	72102894	72119660	0	10	1055,104,222,176,248,106,973,98,176,98,	0,1211,1400,1781,2834,3458,6998,8101,12657,16668,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr15	83317300	83327569	ENCT00000144527.1	0	+	83317300	83327569	0	2	1392,8790,	0,1479,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr15	83317300	83327569	ENCT00000144526.1	0	+	83317300	83327569	0	3	259,171,8790,	0,1221,1479,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr15	96897579	96942535	HBMT00000494327.1	0	+	96897579	96942535	0	2	162,5000,	0,39956,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr15	96897579	96942535	HBMT00000494326.1	0	+	96897579	96942535	0	3	162,148,5000,	0,6791,39956,
#Partially deleted in new
chr16	46390142	46392629	ENCT00000158639.1	0	+	46390142	46392629	0	1	2487,	0,
#Partially deleted in new
chr16	46390949	46391750	HBMT00000542983.1	0	+	46390949	46391750	0	1	801,	0,
#Partially deleted in new
chr16	46392000	46392756	HBMT00000542984.1	0	+	46392000	46392756	0	1	756,	0,
#Partially deleted in new
chr16	46393263	46393637	ENCT00000158640.1	0	+	46393263	46393637	0	1	374,	0,
#Partially deleted in new
chr16	46404968	46405421	ENCT00000158643.1	0	+	46404968	46405421	0	1	453,	0,
#Boundary problem: need 30, got 29, diff 1, mapped 1.0
chr16	71963440	72033766	ENST00000534738.1	0	-	71963440	72033766	0	30	141,132,102,211,161,128,465,141,96,235,193,181,200,197,147,179,102,231,194,232,129,127,128,177,132,249,50,117,123,184,	0,514,3882,4377,5820,7754,13022,14492,17954,20241,20576,22022,23352,24563,33663,37595,38364,40333,43782,47694,48713,50244,50465,52517,54494,56679,60738,63674,68730,70142,
#Boundary problem: need 33, got 32, diff 1, mapped 1.0
chr17	7451844	7481234	MICT00000141031.1	0	+	7451844	7481234	0	33	53,689,48,76,54,36,125,1277,230,79,48,119,139,1540,726,240,112,148,48,79,138,84,51,498,956,49,133,140,169,110,144,140,90,	0,96,946,1592,2271,2415,8250,8571,10540,11096,11318,11521,11822,12196,14538,16097,16431,16912,17189,18399,21829,22154,22356,22846,23382,25733,26019,26592,27997,28529,28817,29040,29300,
#Boundary problem: need 38, got 37, diff 1, mapped 1.0
chr17	7451844	7486248	MICT00000141026.1	0	+	7451844	7486248	0	38	53,644,48,76,54,36,125,2199,79,48,119,139,1540,726,240,112,148,48,79,138,84,51,498,2400,133,140,169,110,144,138,90,80,1385,518,120,73,171,1553,	0,141,946,1592,2271,2415,8250,8571,11096,11318,11521,11822,12196,14538,16097,16431,16912,17189,18399,21829,22154,22356,22846,23382,26019,26592,27997,28529,28817,29042,29300,29638,29815,31283,31939,32184,32369,32851,
#Boundary problem: need 34, got 33, diff 1, mapped 1.0
chr17	7460732	7486248	MICT00000141045.1	0	+	7460732	7486248	0	34	791,230,79,48,119,139,1540,726,240,112,148,48,79,138,84,51,107,159,956,49,133,140,169,110,144,138,90,80,1385,518,120,73,171,1553,	0,1652,2208,2430,2633,2934,3308,5650,7209,7543,8024,8301,9511,12941,13266,13468,13958,14297,14494,16845,17131,17704,19109,19641,19929,20154,20412,20750,20927,22395,23051,23296,23481,23963,
#Boundary problem: need 37, got 36, diff 1, mapped 1.0
chr17	7461496	7499667	ENCT00000171724.1	0	+	7461496	7499667	0	37	27,230,79,119,139,1540,727,240,112,148,84,44,137,84,51,107,49,133,140,169,110,144,138,90,80,1385,518,120,73,171,2588,66,133,86,119,102,8924,	0,888,1444,1869,2170,2544,4886,6445,6779,7260,7537,8783,12178,12502,12704,13194,16081,16367,16940,18345,18877,19165,19390,19648,19986,20163,21631,22287,22532,22717,23199,27553,27767,28513,28720,28991,29247,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr17	7466578	7482033	ENST00000579777.1	0	+	7466578	7482033	0	21	530,240,112,148,48,79,138,84,51,107,581,49,133,140,169,110,144,138,90,80,374,	0,1363,1697,2178,2455,3665,7095,7420,7622,8112,9023,10999,11285,11858,13263,13795,14083,14308,14566,14904,15081,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	26685937	26687967	FTMT26700028808.1	0	+	26685937	26687967	0	4	75,90,43,210,	0,400,1614,1820,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	30760990	30762461	MICT00000145470.1	0	+	30760990	30762461	0	2	697,532,	0,939,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	34328355	34343745	ENCT00000174235.1	0	+	34328355	34343745	0	3	286,1475,6686,	0,293,8704,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	34400101	34410278	ENCT00000174249.1	0	+	34400101	34410278	0	3	930,213,6209,	0,1894,3968,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	34400101	34410278	ENCT00000174248.1	0	+	34400101	34410278	0	2	2107,6209,	0,3968,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	35263994	35293966	MICT00000146191.1	0	-	35263994	35293966	0	3	830,5818,1864,	0,20999,28108,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	35283417	35293966	ENCT00000182945.1	0	-	35283417	35293966	0	2	6509,4000,	0,6549,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	36105177	36109970	MICT00000146343.1	0	+	36105177	36109970	0	2	2385,1451,	0,3342,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	36105177	36109970	MICT00000146342.1	0	+	36105177	36109970	0	2	2687,1964,	0,2829,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	41391801	41393016	MICT00000148181.1	0	-	41391801	41393016	0	2	335,507,	0,708,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr17	43340348	43389671	HBMT00000629935.1	0	-	43340348	43389671	0	16	1819,101,145,107,354,151,164,105,132,130,138,614,211,70,276,21,	0,2181,3555,4110,4424,7431,8076,10521,11141,11482,21830,23449,24171,26253,27507,49302,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr17	43340466	43394383	FTMT26500004404.1	0	-	43340466	43394383	0	15	2164,145,107,354,151,164,105,132,130,138,614,211,70,276,58,	0,3437,3992,4306,7313,7958,10403,11023,11364,21712,23331,24053,26135,27389,53859,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr17	43340466	43394383	FTMT26500061002.1	0	-	43340466	43394383	0	15	1701,101,145,107,354,164,105,132,130,138,614,211,70,276,58,	0,2063,3437,3992,4306,7958,10403,11023,11364,21712,23331,24053,26135,27389,53859,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr17	43340494	43394383	ENST00000587332.1	0	-	43340494	43394383	0	16	1673,101,145,107,354,151,164,105,132,130,138,614,211,70,276,58,	0,2035,3409,3964,4278,7285,7930,10375,10995,11336,21684,23303,24025,26107,27361,53831,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr17	43340494	43389671	FTMT26500011768.1	0	-	43340494	43389671	0	15	2136,145,107,354,151,164,105,132,130,138,614,211,70,276,21,	0,3409,3964,4278,7285,7930,10375,10995,11336,21684,23303,24025,26107,27361,49156,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr17	47919956	47927917	MICT00000150182.1	0	+	47919956	47927917	0	5	2493,121,97,149,3624,	0,3291,3550,3868,4337,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	77681125	77683127	FTMT26700030217.1	0	+	77681125	77683127	0	2	340,847,	0,1155,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr17	77681125	77688628	MICT00000155844.1	0	+	77681125	77688628	0	3	340,1357,4772,	0,1155,2731,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	77681125	77686081	ENST00000397549.2	0	+	77681125	77686081	0	2	340,3801,	0,1155,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr18	3602691	3617435	ENCT00000190430.1	0	+	3602691	3617435	0	3	1522,144,9876,	0,3860,4868,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr18	3602691	3617435	ENCT00000190431.1	0	+	3602691	3617435	0	3	1522,87,7705,	0,3860,7039,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr19	2321522	2355545	HBMT00000695086.1	0	+	2321522	2355545	0	15	7252,120,183,90,140,143,96,117,82,75,63,100,78,161,2602,	0,13078,15919,17228,17545,18300,18552,19373,21686,22440,22837,23028,23728,29909,31421,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr19	2328682	2354927	FTMT27500008524.1	0	+	2328682	2354927	0	14	92,120,1399,144,143,96,117,82,75,63,100,78,161,1984,	0,5918,8759,10381,11140,11392,12213,14526,15280,15677,15868,16568,22749,24261,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	2328682	2340159	FTMT27500033987.1	0	+	2328682	2340159	0	6	92,183,90,140,143,85,	0,8759,10068,10385,11140,11392,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr19	2328682	2353925	ENST00000586377.2	0	+	2328682	2353925	0	15	92,120,183,90,140,143,96,117,82,75,63,100,78,161,982,	0,5918,8759,10068,10385,11140,11392,12213,14526,15280,15677,15868,16568,22749,24261,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	2328682	2343290	ENST00000590982.1	0	+	2328682	2343290	0	9	92,120,183,28,144,143,96,117,82,	0,5918,8759,10130,10381,11140,11392,12213,14526,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	2328682	2341016	ENST00000382189.2	0	+	2328682	2341016	0	9	92,120,183,90,140,143,85,7,90,	0,5918,8759,10068,10385,11140,11392,11825,12244,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr19	2328682	2355099	ENST00000452401.2	0	+	2328682	2355099	0	16	92,120,183,90,140,143,80,14,117,82,75,63,100,78,224,2156,	0,5918,8759,10068,10385,11140,11392,11474,12213,14526,15280,15677,15868,16568,22749,24261,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr19	2328682	2342501	ENST00000592738.2	0	+	2328682	2342501	0	8	92,120,183,90,140,143,96,1606,	0,5918,8759,10068,10385,11140,11392,12213,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr19	2328682	2353931	ENST00000590295.2	0	+	2328682	2353931	0	15	92,120,183,90,140,143,96,117,82,75,63,100,78,224,988,	0,5918,8759,10068,10385,11140,11392,12213,14526,15280,15677,15868,16568,22749,24261,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr19	2328682	2354804	ENST00000592845.2	0	+	2328682	2354804	0	15	92,120,183,90,140,143,96,117,82,75,63,100,78,161,1861,	0,5918,8759,10068,10385,11140,11392,12213,14526,15280,15677,15868,16568,22749,24261,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	2328682	2341466	ENST00000593198.1	0	+	2328682	2341466	0	9	92,123,120,183,90,140,143,96,571,	0,1613,5918,8759,10068,10385,11140,11392,12213,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr19	2332644	2354846	FTMT27500008534.1	0	+	2332644	2354846	0	14	243,120,1399,144,143,96,117,82,75,63,100,78,224,1903,	0,1956,4797,6419,7178,7430,8251,10564,11318,11715,11906,12606,18787,20299,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr19	2332644	2354846	FTMT27500008535.1	0	+	2332644	2354846	0	14	243,120,1399,144,143,96,117,82,75,63,100,78,161,1903,	0,1956,4797,6419,7178,7430,8251,10564,11318,11715,11906,12606,18787,20299,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr19	2334656	2340933	FTMT27500027127.1	0	+	2334656	2340933	0	7	64,183,90,144,143,96,38,	0,2785,4094,4407,5166,5418,6239,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	2334656	2344970	FTMT27500029678.1	0	+	2334656	2344970	0	10	64,183,90,140,143,96,2395,75,63,420,	0,2785,4094,4411,5166,5418,6239,9306,9703,9894,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	2337686	2341431	FTMT27500003401.1	0	+	2337686	2341431	0	5	1154,222,143,96,536,	0,1381,2136,2388,3209,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	2338762	2343291	ENST00000591959.2	0	+	2338762	2343291	0	6	78,140,140,96,117,83,	0,305,1063,1312,2133,4446,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	2338762	2353122	FTMT27500007690.1	0	+	2338762	2353122	0	11	78,140,143,96,2395,75,63,100,78,161,179,	0,305,1060,1312,2133,5200,5597,5788,6488,12669,14181,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	2339884	2344533	FTMT27500010262.1	0	+	2339884	2344533	0	6	81,96,117,82,75,92,	0,190,1011,3324,4078,4557,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	2339884	2354465	FTMT27500010266.1	0	+	2339884	2354465	0	10	81,96,117,82,75,63,100,78,224,1522,	0,190,1011,3324,4078,4475,4666,5366,11547,13059,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	2339884	2341954	ENST00000590902.1	0	+	2339884	2341954	0	3	81,96,1025,	0,190,1045,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	2339884	2354465	FTMT27500010267.1	0	+	2339884	2354465	0	10	81,96,117,82,75,63,100,78,161,1522,	0,190,1011,3324,4078,4475,4666,5366,11547,13059,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	4909512	4961094	ENCT00000200937.1	0	+	4909512	4961094	0	4	155,163,12407,19338,	0,1375,19721,32244,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	4909512	4961182	ENST00000587870.1	0	+	4909512	4961182	0	12	155,24,124,108,105,107,163,138,139,172,105,515,	0,32407,34631,34842,36360,37604,41110,41358,44849,45149,47207,51155,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr19	4909512	4962161	ENST00000591733.1	0	+	4909512	4962161	0	17	155,163,255,161,216,101,187,124,108,105,107,163,138,139,172,105,1494,	0,1375,19721,21215,23240,32027,32244,34631,34842,36360,37604,41110,41358,44849,45149,47207,51155,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr19	4909512	4962162	ENST00000262952.6	0	+	4909512	4962162	0	18	155,163,255,161,216,101,187,124,108,105,107,163,138,139,26,144,105,1495,	0,1375,19721,21215,23240,32027,32244,34631,34842,36360,37604,41110,41358,44849,45149,45177,47207,51155,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr19	4910155	4960972	ENST00000587187.1	0	+	4910155	4960972	0	17	103,163,255,161,216,101,187,124,108,105,107,163,138,139,172,105,305,	0,732,19078,20572,22597,31384,31601,33988,34199,35717,36961,40467,40715,44206,44506,46564,50512,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr19	4910155	4960965	ENST00000543616.1	0	+	4910155	4960965	0	18	351,163,255,161,216,101,187,124,108,105,107,163,138,139,26,144,105,298,	0,732,19078,20572,22597,31384,31601,33988,34199,35717,36961,40467,40715,44206,44506,44534,46564,50512,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr19	4910155	4960963	ENST00000592200.1	0	+	4910155	4960963	0	17	351,163,255,161,216,101,187,124,108,105,107,163,138,139,172,105,296,	0,732,19078,20572,22597,31384,31601,33988,34199,35717,36961,40467,40715,44206,44506,46564,50512,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr19	4910155	4962250	FTMT27500034082.1	0	+	4910155	4962250	0	16	351,163,255,161,216,101,187,124,105,107,163,138,139,172,105,1583,	0,732,19078,20572,22597,31384,31601,33988,35717,36961,40467,40715,44206,44506,46564,50512,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr19	4910155	4961143	ENST00000591699.1	0	+	4910155	4961143	0	16	895,255,161,216,101,187,124,108,105,107,163,138,139,172,105,476,	0,19078,20572,22597,31384,31601,33988,34199,35717,36961,40467,40715,44206,44506,46564,50512,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr19	4910155	4962162	ENST00000398240.2	0	+	4910155	4962162	0	17	895,255,161,216,101,187,124,108,105,107,163,138,139,26,144,105,1495,	0,19078,20572,22597,31384,31601,33988,34199,35717,36961,40467,40715,44206,44506,44534,46564,50512,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr19	4910798	4960947	FTMT27500023918.1	0	+	4910798	4960947	0	16	252,255,161,216,101,187,124,108,105,107,163,138,139,172,105,280,	0,18435,19929,21954,30741,30958,33345,33556,35074,36318,39824,40072,43563,43863,45921,49869,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr19	4929256	4961094	ENCT00000200941.1	0	+	4929256	4961094	0	13	232,104,216,101,187,124,108,105,107,386,722,1227,4690,	0,1528,3496,12283,12500,14887,15098,16616,17860,21366,25105,25847,27148,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	4941540	4962250	FTMT27500026507.1	0	+	4941540	4962250	0	12	100,187,124,108,105,107,163,138,139,172,105,1583,	0,216,2603,2814,4332,5576,9082,9330,12821,13121,15179,19127,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	4945686	4958071	FTMT27500021893.1	0	+	4945686	4958071	0	5	291,107,386,472,1498,	0,1430,4936,8675,10887,
#Partially deleted in new
chr19	8740084	8794017	MICT00000167667.1	0	+	8740084	8794017	0	5	110,150,97,50,7824,	0,1841,5019,44301,46109,
#Partially deleted in new
chr19	8765022	8794017	MICT00000167678.1	0	+	8765022	8794017	0	4	46,50,98,7609,	0,19363,21171,21386,
#Partially deleted in new
chr19	8765022	8794017	MICT00000167679.1	0	+	8765022	8794017	0	4	46,50,99,7432,	0,19363,21170,21563,
#Partially deleted in new
chr19	8765022	8794731	ENCT00000201433.1	0	+	8765022	8794731	0	3	46,50,8146,	0,19363,21563,
#Partially deleted in new
chr19	8765022	8794731	ENCT00000201435.1	0	+	8765022	8794731	0	4	46,50,100,8144,	0,19363,21171,21565,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr19	15726028	15740448	ENST00000441682.2	0	+	15726028	15740448	0	14	63,199,145,54,53,72,122,271,67,130,134,65,83,446,	0,398,2782,4272,4417,4472,7000,7886,8480,8746,13083,13312,13542,13974,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	15726028	15740262	ENST00000589787.1	0	+	15726028	15740262	0	9	597,1762,271,67,130,134,65,83,260,	0,2782,7886,8480,8746,13083,13312,13542,13974,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	15726028	15740035	ENST00000443973.2	0	+	15726028	15740035	0	11	63,199,145,272,122,271,67,130,134,83,33,	0,398,2782,4272,7000,7886,8480,8746,13083,13542,13974,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	15726028	15747633	MICT00000169848.1	0	+	15726028	15747633	0	11	68,199,1762,122,271,67,130,134,65,83,7631,	0,398,2782,7000,7886,8480,8746,13083,13312,13542,13974,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr19	15726028	15747633	MICT00000169846.1	0	+	15726028	15747633	0	13	158,199,145,54,127,122,271,67,130,134,65,83,7631,	0,398,2782,4272,4417,7000,7886,8480,8746,13083,13312,13542,13974,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	15726028	15739653	MICT00000169844.1	0	+	15726028	15739653	0	9	63,199,1762,176,271,67,130,134,83,	0,398,2782,6946,7886,8480,8746,13083,13542,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	15726028	15747633	MICT00000169843.1	0	+	15726028	15747633	0	12	63,199,1544,127,122,271,67,130,134,65,83,7631,	0,398,2782,4417,7000,7886,8480,8746,13083,13312,13542,13974,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr19	15726028	15740168	ENST00000589019.1	0	+	15726028	15740168	0	13	63,199,145,54,127,122,271,67,130,134,65,77,166,	0,398,2782,4272,4417,7000,7886,8480,8746,13083,13312,13542,13974,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	15726028	15747633	MICT00000169847.1	0	+	15726028	15747633	0	12	63,199,145,54,127,122,271,67,130,134,83,7631,	0,398,2782,4272,4417,7000,7886,8480,8746,13083,13542,13974,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	15726028	15733122	ENST00000592615.1	0	+	15726028	15733122	0	6	158,199,145,54,127,94,	0,398,2782,4272,4417,7000,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	41843217	41963292	ENCT00000215016.1	0	-	41843217	41963292	0	2	708,140,	0,119935,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	41958396	41985624	ENCT00000215068.1	0	-	41958396	41985624	0	4	3996,74,204,338,	0,21974,26592,26890,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	42038067	42047395	ENCT00000205773.1	0	+	42038067	42047395	0	3	4079,166,1022,	0,5392,8306,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	42038067	42047261	FTMT27500003637.1	0	+	42038067	42047261	0	5	298,70,70,167,888,	0,3826,4008,5391,8306,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42041544	42047261	FTMT27500008152.1	0	+	42041544	42047261	0	4	419,70,167,888,	0,531,1914,4829,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	45005728	45033698	ENST00000454753.1	0	-	45005728	45033698	0	12	103,126,36,62,87,118,279,279,279,276,144,218,	0,9359,9966,10346,11197,11502,15278,18779,20934,22290,23405,27752,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	45007823	45033698	MICT00000176887.1	0	-	45007823	45033698	0	9	2443,126,62,87,118,279,279,144,218,	0,7264,8251,9102,9407,13183,16684,21310,25657,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	45010210	45033698	ENST00000424903.1	0	-	45010210	45033698	0	12	56,126,36,62,64,22,118,279,279,276,144,218,	0,4877,5484,5864,6715,6780,7020,14297,16452,17808,18923,23270,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr19	45010210	45033698	ENST00000445209.1	0	-	45010210	45033698	0	13	56,126,36,62,64,22,118,279,279,279,276,144,218,	0,4877,5484,5864,6715,6780,7020,10796,14297,16452,17808,18923,23270,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	45010210	45033698	ENST00000414638.1	0	-	45010210	45033698	0	11	56,126,62,87,118,279,279,279,276,144,218,	0,4877,5864,6715,7020,10796,14297,16452,17808,18923,23270,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	45010210	45033698	ENST00000412211.1	0	-	45010210	45033698	0	12	56,126,62,64,22,118,279,279,279,276,144,218,	0,4877,5864,6715,6780,7020,10796,14297,16452,17808,18923,23270,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	45010210	45033698	ENST00000421432.1	0	-	45010210	45033698	0	10	56,126,62,87,118,279,279,276,144,218,	0,4877,5864,6715,7020,14297,16452,17808,18923,23270,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	45010210	45033698	ENST00000448350.1	0	-	45010210	45033698	0	11	56,126,36,62,87,118,279,279,276,144,218,	0,4877,5484,5864,6715,7020,14297,16452,17808,18923,23270,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	45010210	45033698	ENST00000431738.1	0	-	45010210	45033698	0	12	56,126,36,62,87,118,279,279,279,276,144,218,	0,4877,5484,5864,6715,7020,10796,14297,16452,17808,18923,23270,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr19	45015067	45033698	ENST00000316962.7	0	-	45015067	45033698	0	13	15,129,36,62,64,22,118,279,279,279,276,144,218,	0,17,627,1007,1858,1923,2163,5939,9440,11595,12951,14066,18413,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	53935236	53953585	ENST00000447129.1	0	+	53935236	53953585	0	6	45,123,111,88,128,453,	0,13017,14243,15212,17528,17896,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	53935236	53961514	ENST00000454407.1	0	+	53935236	53961514	0	5	45,275,138,124,3614,	0,13017,15162,17528,22664,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	53949472	53961574	HBMT00000718432.1	0	+	53949472	53961574	0	5	890,88,124,837,2751,	0,976,3292,8428,9351,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	54702851	54711922	HBMT00000744236.1	0	-	54702851	54711922	0	2	772,8191,	0,880,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	54703320	54704593	ENST00000426213.1	0	-	54703320	54704593	0	2	303,862,	0,411,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr19	54740470	54850433	HBMT00000744545.1	0	-	54740470	54850433	0	8	599,604,51,26,157,181,303,767,	0,1891,3306,3679,3825,42196,42729,109196,
#Partially deleted in new
chr19	54781742	54850404	HBMT00000744964.1	0	-	54781742	54850404	0	8	51,229,297,217,217,285,36,74,	0,445,924,1457,21359,67924,68394,68588,
#Partially deleted in new
chr19	54799848	54850404	HBMT00000744987.1	0	-	54799848	54850404	0	7	256,303,297,303,285,36,74,	0,2078,2634,3167,23285,50288,50482,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr19	54935363	54960608	ENCT00000217487.1	0	-	54935363	54960608	0	3	11950,10619,2109,	0,12208,23136,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	54935363	54960608	ENCT00000217485.1	0	-	54935363	54960608	0	3	20994,231,3510,	0,21098,21735,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	19163655	19226686	HBMT00000799214.1	0	-	19163655	19226686	0	4	5491,46,154,291,	0,12937,58438,62740,
#Partially deleted in new
chr2	19167299	19226686	FTMT20500046193.1	0	-	19167299	19226686	0	3	1847,154,291,	0,54794,59096,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr2	31747549	31806005	ENST00000405650.1	0	-	31747549	31806005	0	5	3783,151,102,164,316,	0,6827,8891,11123,58140,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr2	31749655	31806005	ENST00000233139.1	0	-	31749655	31806005	0	6	1677,151,102,164,188,126,	0,4721,6785,9017,56034,56224,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	31756223	31806005	FTMT20500047226.1	0	-	31756223	31806005	0	4	32,102,164,316,	0,217,2449,49466,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	88744342	88752211	HBMT00000810156.1	0	-	88744342	88752211	0	2	4006,797,	0,7072,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	88744342	88752211	HBMT00000810155.1	0	-	88744342	88752211	0	2	4009,797,	0,7072,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	88744345	88752211	ENCT00000244996.1	0	-	88744345	88752211	0	2	4004,796,	0,7070,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	88744345	88752211	ENCT00000244995.1	0	-	88744345	88752211	0	2	4003,994,	0,6872,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	88747725	88752211	ENST00000428390.1	0	-	88747725	88752211	0	3	623,337,458,	0,3689,4028,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	88747725	88752211	ENST00000398142.3	0	-	88747725	88752211	0	2	623,797,	0,3689,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	97948225	97952619	FTMT20700001298.1	0	+	97948225	97952619	0	3	2297,130,1580,	0,2389,2814,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	103489797	103512230	ENST00000447987.1	0	-	103489797	103512230	0	4	242,172,205,139,	0,17924,21234,22294,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr2	127291615	127403745	MICT00000198451.1	0	-	127291615	127403745	0	5	2479,114,1800,277,138,	0,98911,105677,109468,111992,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	232538385	232539890	ENCT00000237058.1	0	+	232538385	232539890	0	2	24,1376,	0,129,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	242738754	242744759	ENCT00000255441.1	0	-	242738754	242744759	0	2	2049,3703,	0,2302,
#Partially deleted in new
chr2	242743549	242744575	MICT00000211893.1	0	-	242743549	242744575	0	2	157,268,	0,758,
#Partially deleted in new
chr2	242743549	242744759	MICT00000211894.1	0	-	242743549	242744759	0	2	157,490,	0,720,
#Partially deleted in new
chr2	242743549	242751744	MICT00000211902.1	0	-	242743549	242751744	0	1	8195,	0,
#Partially deleted in new
chr2	242743549	242751744	MICT00000211898.1	0	-	242743549	242751744	0	3	1215,1525,50,	0,5389,8145,
#Partially deleted in new
chr2	242748962	242751744	HBMT00000828418.1	0	-	242748962	242751744	0	2	1501,50,	0,2732,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	242749406	242751744	ENST00000413820.1	0	-	242749406	242751744	0	2	1057,183,	0,2155,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	242750204	242751744	ENST00000439270.1	0	-	242750204	242751744	0	3	259,48,50,	0,1357,1490,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	37028898	37055140	MICT00000217511.1	0	-	37028898	37055140	0	7	6071,123,107,368,93,281,79,	0,14854,19322,20281,20754,21835,26163,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr20	37049634	37051964	FTMT27700017323.1	0	-	37049634	37051964	0	2	111,1226,	0,1104,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147917	MICT00000221846.1	0	-	61141435	61147917	0	7	535,148,1153,162,174,1330,897,	0,991,1477,3312,3598,4083,5585,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61147342	MICT00000221836.1	0	-	61141435	61147342	0	5	2393,162,174,197,364,	0,3312,3598,5216,5543,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr20	61141435	61148733	MICT00000221864.1	0	-	61141435	61148733	0	8	535,148,1153,162,174,1330,146,101,	0,991,1477,3312,3598,4083,5543,7197,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147917	MICT00000221847.1	0	-	61141435	61147917	0	7	535,148,1464,162,174,1330,939,	0,991,1477,3312,3598,4083,5543,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147342	MICT00000221839.1	0	-	61141435	61147342	0	7	535,627,204,162,174,1330,364,	0,991,2426,3312,3598,4083,5543,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148733	MICT00000221861.1	0	-	61141435	61148733	0	5	1721,619,162,174,101,	0,2011,3312,3598,7197,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147917	MICT00000221850.1	0	-	61141435	61147917	0	6	1618,619,155,174,1330,939,	0,2011,3319,3598,4083,5543,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147342	MICT00000221838.1	0	-	61141435	61147342	0	6	535,148,1153,174,1330,364,	0,991,1477,3598,4083,5543,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr20	61141435	61147342	MICT00000221833.1	0	-	61141435	61147342	0	9	535,148,141,619,174,150,213,197,322,	0,991,1477,2011,3598,4083,4761,5216,5585,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61148733	MICT00000221880.1	0	-	61141435	61148733	0	6	1139,389,619,155,174,101,	0,1477,2011,3319,3598,7197,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr21	17442820	17982094	ENST00000458468.1	0	+	17442820	17982094	0	8	48,285,97,60,49,61,115,2781,	0,613,111090,160555,416989,466878,523839,536493,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	17566780	17984499	MICT00000223699.1	0	+	17566780	17984499	0	5	173,60,49,61,5186,	0,36595,293029,342918,412533,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	17566780	17984499	MICT00000223698.1	0	+	17566780	17984499	0	5	173,60,72,49,5186,	0,36595,197153,293029,412533,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	17791882	17982545	FTMT28300007777.1	0	+	17791882	17982545	0	3	179,49,3232,	0,67927,187431,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	23582244	23630860	ENCT00000270456.1	0	+	23582244	23630860	0	3	319,79,31124,	0,2809,17492,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr21	25263188	25321107	ENCT00000270501.1	0	+	25263188	25321107	0	2	201,57212,	0,707,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr21	26541796	26839029	MICT00000224433.1	0	-	26541796	26839029	0	17	163,150,205,88,93,216,166,13000,169,93,96,2162,18197,236,63,55,154,	0,1274,5758,164254,191705,192262,203393,203855,219429,251223,255069,260281,262773,283706,290871,296938,297079,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	26748261	26765403	ENCT00000270547.1	0	+	26748261	26765403	0	3	135,130,11583,	0,4851,5559,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	22390731	22394463	ENST00000411554.1	0	+	22390731	22394463	0	2	162,628,	0,3104,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr22	22612717	22652458	ENCT00000280948.1	0	-	22612717	22652458	0	5	9506,25311,1621,171,412,	0,9555,34957,37442,39329,
#Partially deleted in new
chr22	22640238	22641605	MICT00000230229.1	0	+	22640238	22641605	0	2	193,439,	0,928,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	27042392	27072914	HBMT00000938737.1	0	+	27042392	27072914	0	5	531,83,1480,126,8794,	0,16887,19028,20755,21728,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	27042392	27072544	FTMT28700017373.1	0	+	27042392	27072544	0	5	531,83,1406,126,8424,	0,16887,19102,20755,21728,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	27042392	27072532	FTMT28700020246.1	0	+	27042392	27072532	0	5	531,83,1406,92,8412,	0,16887,19102,20789,21728,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr22	27042830	27134100	HBMT00000938747.1	0	+	27042830	27134100	0	9	93,83,1480,126,4830,207,151,872,76,	0,16449,18590,20317,21290,70385,79776,87405,91194,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr22	27042830	27257105	HBMT00000938753.1	0	+	27042830	27257105	0	15	93,83,1480,126,4830,207,151,62,128,130,312,218,84,253,1389,	0,16449,18590,20317,21290,70385,79776,127288,129959,131588,154612,189748,195444,205041,212886,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr22	27053221	27122741	ENCT00000277412.1	0	+	27053221	27122741	0	6	97,83,1406,126,4830,131,	0,6058,8273,9926,10899,69389,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr22	27053221	27064400	MICT00000231412.1	0	+	27053221	27064400	0	7	97,173,83,1480,126,158,24,	0,224,6058,8199,9926,10899,11155,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr22	27053221	27064400	MICT00000231414.1	0	+	27053221	27064400	0	7	97,173,194,1406,126,158,24,	0,224,6058,8273,9926,10899,11155,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr22	27053551	27072532	FTMT28700003912.1	0	+	27053551	27072532	0	6	67,83,1406,126,245,7337,	0,5728,7943,9596,10569,11644,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	27053551	27072438	ENST00000430080.1	0	+	27053551	27072438	0	5	67,83,1480,126,8318,	0,5728,7869,9596,10569,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	27053551	27072438	ENST00000423278.1	0	+	27053551	27072438	0	5	67,83,1406,126,8318,	0,5728,7943,9596,10569,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	27053551	27072438	ENST00000421151.1	0	+	27053551	27072438	0	4	67,83,1480,8318,	0,5728,7869,10569,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	27053551	27072438	ENST00000456129.1	0	+	27053551	27072438	0	4	67,83,1406,8318,	0,5728,7943,10569,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr22	27053574	27206055	ENCT00000277435.1	0	+	27053574	27206055	0	14	44,83,1406,126,3552,9542,2799,130,3734,144,9413,4285,4545,3879,	0,5705,7920,9573,10546,59641,116544,120844,122272,126285,129095,138520,143868,148602,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr22	27053574	27206055	ENCT00000277434.1	0	+	27053574	27206055	0	13	44,194,1406,126,4830,156,9542,2799,130,113,13710,4545,3879,	0,5705,7920,9573,10546,36069,59641,116544,120844,122272,129095,143868,148602,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr22	27053574	27182169	ENCT00000277436.1	0	+	27053574	27182169	0	10	44,83,1480,126,4830,156,62,128,130,6323,	0,5705,7846,9573,10546,36069,116544,119215,120844,122272,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	27059286	27072914	HBMT00000938779.1	0	+	27059286	27072914	0	3	187,1480,8794,	0,2134,4834,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr22	27059286	27140301	FTMT28700002897.1	0	+	27059286	27140301	0	9	187,1406,126,4830,179,103,207,151,699,	0,2208,3861,4834,48506,50691,53929,63320,80316,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	27059286	27072532	FTMT28700008632.1	0	+	27059286	27072532	0	4	158,1406,126,8412,	0,2208,3861,4834,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	27059286	27072914	HBMT00000938778.1	0	+	27059286	27072914	0	4	187,1480,126,8794,	0,2134,3861,4834,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	30817204	30819930	FTMT28500014865.1	0	-	30817204	30819930	0	2	589,389,	0,2337,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	42486948	42535695	MICT00000234503.1	0	+	42486948	42535695	0	4	656,516,533,1627,	0,33103,46087,47120,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	42486948	42535695	MICT00000234492.1	0	+	42486948	42535695	0	5	237,304,282,114,2660,	0,352,45259,45661,46087,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	42486948	42535695	MICT00000234504.1	0	+	42486948	42535695	0	4	656,516,704,1666,	0,33103,46087,47081,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr22	42486948	42535286	ENST00000416037.2	0	+	42486948	42535286	0	7	237,304,114,516,533,516,2251,	0,352,1174,33103,33931,45259,46087,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr22	48027519	48418740	MICT00000235636.1	0	+	48027519	48418740	0	11	116,174,113,121,136,66,159,143,196,78,7172,	0,3409,54429,54804,55032,55370,72818,106663,381979,383797,384049,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr3	14431199	14444405	MICT00000238444.1	0	-	14431199	14444405	0	7	691,109,133,110,145,909,240,	0,1415,3689,6544,7209,8629,12966,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr3	14530618	14581875	ENST00000273083.3	0	-	14530618	14581875	0	24	4716,147,144,106,175,180,140,145,146,67,81,146,187,150,126,169,148,146,76,87,146,136,81,100,	0,5732,7306,14455,16504,17690,18450,20709,22054,22302,23666,24554,25181,27953,28661,30999,31278,32530,33888,34500,35281,36325,36739,51157,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr3	14530618	14581844	ENST00000443613.2	0	-	14530618	14581844	0	24	4716,147,144,106,175,180,140,145,146,67,81,146,187,150,126,173,148,146,76,87,146,136,81,69,	0,5732,7306,14455,16504,17690,18450,20709,22054,22302,23666,24554,25181,27953,28661,30995,31278,32530,33888,34500,35281,36325,36739,51157,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr3	14530993	14581844	HBMT00000994773.1	0	-	14530993	14581844	0	23	4341,147,144,106,175,180,140,145,146,67,81,146,187,150,169,148,146,76,87,121,136,81,69,	0,5357,6931,14080,16129,17315,18075,20334,21679,21927,23291,24179,24806,27578,30624,30903,32155,33513,34125,34931,35950,36364,50782,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr3	14530993	14565879	HBMT00000994772.1	0	-	14530993	14565879	0	20	4341,147,144,106,175,180,140,145,146,67,81,146,187,150,169,148,146,76,87,149,	0,5357,6931,14080,16129,17315,18075,20334,21679,21927,23291,24179,24806,27578,30624,30903,32155,33513,34125,34737,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr3	14531715	14644525	MICT00000238483.1	0	-	14531715	14644525	0	24	3619,147,144,106,175,180,140,145,146,67,81,146,187,150,126,169,148,121,76,87,146,136,81,91,	0,4635,6209,13358,15407,16593,17353,19612,20957,21205,22569,23457,24084,26856,27564,29902,30181,31458,32791,33403,34184,35228,35642,112719,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr3	14531715	14581875	MICT00000238470.1	0	-	14531715	14581875	0	22	3619,147,144,388,175,180,140,145,146,67,81,146,2922,169,148,146,76,87,146,136,81,100,	0,4635,6209,13358,15407,16593,17353,19612,20957,21205,22569,23457,24084,29902,30181,31433,32791,33403,34184,35228,35642,50060,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr3	14531715	14567461	MICT00000238459.1	0	-	14531715	14567461	0	23	3619,147,144,106,175,180,140,145,146,67,922,81,146,187,150,169,148,146,76,87,146,136,104,	0,4635,6209,13358,15407,16593,17353,19612,20957,21205,21378,22569,23457,24084,26856,29902,30181,31433,32791,33403,34184,35228,35642,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr3	14531715	14581844	MICT00000238464.1	0	-	14531715	14581844	0	24	3619,147,144,106,175,180,140,1599,146,1117,81,146,187,150,126,169,148,146,76,87,146,136,81,69,	0,4635,6209,13358,15407,16593,17353,18158,20957,21205,22569,23457,24084,26856,27564,29902,30181,31433,32791,33403,34184,35228,35642,50060,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr3	14531715	14565879	MICT00000238456.1	0	-	14531715	14565879	0	20	3619,147,144,388,175,180,140,145,146,67,81,146,187,150,169,148,146,76,87,448,	0,4635,6209,13358,15407,16593,17353,19612,20957,21205,22569,23457,24084,26856,29902,30181,31433,32791,33403,33716,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr3	14531715	14581875	MICT00000238469.1	0	-	14531715	14581875	0	24	3619,147,144,106,175,180,140,145,146,67,81,146,187,306,126,169,148,146,76,87,146,136,81,100,	0,4635,6209,13358,15407,16593,17353,19612,20957,21205,22569,23457,24084,26856,27564,29902,30181,31433,32791,33403,34184,35228,35642,50060,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr3	14531715	14644525	MICT00000238482.1	0	-	14531715	14644525	0	22	3619,147,144,106,175,180,140,1599,146,1445,146,187,150,169,148,146,76,87,146,136,81,91,	0,4635,6209,13358,15407,16593,17353,18158,20957,21205,23457,24084,26856,29902,30181,31433,32791,33403,34184,35228,35642,112719,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr3	14531715	14567461	MICT00000238458.1	0	-	14531715	14567461	0	22	3619,147,144,106,175,180,140,145,146,67,146,187,150,126,169,148,146,76,87,146,136,104,	0,4635,6209,13358,15407,16593,17353,19612,20957,21205,23457,24084,26856,27564,29902,30181,31433,32791,33403,34184,35228,35642,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr3	14531715	14644525	MICT00000238484.1	0	-	14531715	14644525	0	23	3619,147,144,106,175,180,140,1599,146,1445,146,187,150,126,169,148,146,76,87,146,136,81,91,	0,4635,6209,13358,15407,16593,17353,18158,20957,21205,23457,24084,26856,27564,29902,30181,31433,32791,33403,34184,35228,35642,112719,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr3	14531715	14565879	MICT00000238455.1	0	-	14531715	14565879	0	21	3619,147,144,106,175,180,140,145,146,67,1272,146,187,150,126,169,148,146,76,87,448,	0,4635,6209,13358,15407,16593,17353,19612,20957,21205,21378,23457,24084,26856,27564,29902,30181,31433,32791,33403,33716,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr3	14532622	14644685	ENCT00000300511.1	0	-	14532622	14644685	0	23	1106,1496,148,143,106,175,180,140,145,1274,81,146,187,150,2507,148,146,76,88,145,136,81,251,	0,1216,3728,5303,12451,14500,15686,16446,18705,20050,21662,22550,23177,25949,26657,29274,30526,31884,32496,33278,34321,34735,111812,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr3	14532622	14644525	ENCT00000300510.1	0	-	14532622	14644525	0	24	2712,147,144,106,175,180,140,145,146,67,1272,146,187,150,126,169,148,146,76,87,146,136,81,91,	0,3728,5302,12451,14500,15686,16446,18705,20050,20298,20471,22550,23177,25949,26657,28995,29274,30526,31884,32496,33277,34321,34735,111812,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr3	14545305	14581875	HBMT00000994778.1	0	-	14545305	14581875	0	20	156,175,180,140,145,146,67,81,146,187,150,169,148,146,76,87,146,136,81,100,	0,1817,3003,3763,6022,7367,7615,8979,9867,10494,13266,16312,16591,17843,19201,19813,20594,21638,22052,36470,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr3	14545412	14581844	ENST00000383795.1	0	-	14545412	14581844	0	21	49,175,180,140,145,146,67,81,146,187,150,126,173,148,146,76,87,146,136,81,69,	0,1710,2896,3656,5915,7260,7508,8872,9760,10387,13159,13867,16201,16484,17736,19094,19706,20487,21531,21945,36363,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr3	14556347	14581844	HBMT00000994781.1	0	-	14556347	14581844	0	10	2374,169,148,146,76,87,121,136,81,69,	0,5270,5549,6801,8159,8771,9577,10596,11010,25428,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr3	14556347	14581875	HBMT00000994782.1	0	-	14556347	14581875	0	10	2374,169,148,146,76,87,146,136,81,100,	0,5270,5549,6801,8159,8771,9552,10596,11010,25428,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr3	50242705	50258303	FTMT21100050531.1	0	+	50242705	50258303	0	13	76,334,807,93,82,236,165,80,101,125,145,104,799,	0,8876,9379,10270,10466,11964,12402,12643,12996,13319,13530,14607,14799,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr3	50297657	50318729	ENCT00000288967.1	0	+	50297657	50318729	0	19	338,184,97,188,158,63,120,94,120,146,112,70,145,220,92,42,56,140,4997,	0,907,2741,8935,9900,10206,10663,10861,11134,13071,13308,13532,13686,14136,14616,14785,15333,15478,16075,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr3	50305083	50315323	HBMT00000973732.1	0	+	50305083	50315323	0	17	118,188,158,63,120,94,120,146,112,70,670,92,42,158,56,140,1591,	0,1509,2474,2780,3237,3435,3708,5645,5882,6106,6260,7190,7359,7649,7907,8052,8649,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr3	50305083	50308889	ENST00000419213.1	0	+	50305083	50308889	0	7	118,188,158,63,120,94,98,	0,1509,2474,2780,3237,3435,3708,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr3	50305083	50314948	FTMT21100059566.1	0	+	50305083	50314948	0	17	118,188,158,577,94,120,146,112,70,142,220,92,42,158,56,140,1216,	0,1509,2474,2780,3435,3708,5645,5882,6106,6263,6710,7190,7359,7649,7907,8052,8649,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr3	50305083	50314948	FTMT21100069249.1	0	+	50305083	50314948	0	17	118,188,158,63,120,94,120,146,112,70,142,220,92,42,56,140,1216,	0,1509,2474,2780,3237,3435,3708,5645,5882,6106,6263,6710,7190,7359,7907,8052,8649,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr3	50306326	50312890	HBMT00000973780.1	0	+	50306326	50312890	0	15	7,188,158,63,120,90,120,146,112,70,145,220,92,42,158,	0,266,1231,1537,1994,2192,2465,4402,4639,4863,5017,5467,5947,6116,6406,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr3	50306326	50312890	HBMT00000973776.1	0	+	50306326	50312890	0	14	7,188,250,120,94,120,146,112,70,142,220,92,42,158,	0,266,1231,1994,2192,2465,4402,4639,4863,5020,5467,5947,6116,6406,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr3	50306326	50312890	HBMT00000973778.1	0	+	50306326	50312890	0	15	7,188,158,63,120,94,120,146,112,70,145,220,92,42,283,	0,266,1231,1537,1994,2192,2465,4402,4639,4863,5017,5467,5947,6116,6281,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr3	50306326	50312890	HBMT00000973775.1	0	+	50306326	50312890	0	14	7,188,250,120,94,120,146,112,70,142,220,92,42,283,	0,266,1231,1994,2192,2465,4402,4639,4863,5020,5467,5947,6116,6281,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr3	50306326	50315323	HBMT00000973792.1	0	+	50306326	50315323	0	16	7,188,250,120,94,120,146,112,70,142,220,92,42,56,140,1591,	0,266,1231,1994,2192,2465,4402,4639,4863,5020,5467,5947,6116,6664,6809,7406,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr3	50306394	50314948	FTMT21100007408.1	0	+	50306394	50314948	0	18	20,188,158,63,120,94,120,146,112,70,142,220,92,42,158,56,140,1216,	0,198,1163,1469,1926,2124,2397,4334,4571,4795,4952,5399,5879,6048,6338,6596,6741,7338,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr3	174901685	174991984	MICT00000254879.1	0	-	174901685	174991984	0	5	303,180,27131,89,85,	0,4020,31403,87160,90214,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr3	195270297	195282526	MICT00000257905.1	0	+	195270297	195282526	0	4	490,361,2253,1107,	0,684,1187,11122,
#Partially deleted in new
chr4	124389	127532	ENST00000513304.1	0	+	124389	127532	0	2	789,801,	0,2342,
#Partially deleted in new
chr4	124389	156177	ENST00000511079.1	0	+	124389	156177	0	3	789,280,1476,	0,2342,30312,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr4	124389	131345	ENCT00000315745.1	0	+	124389	131345	0	4	535,111,74,4454,	0,678,2342,2502,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr4	124389	173436	MICT00000258797.1	0	+	124389	173436	0	4	166,280,11996,3660,	0,2342,30312,45387,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr4	139934	174776	ENCT00000315754.1	0	+	139934	174776	0	2	10206,24505,	0,10337,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr4	89332634	89378115	MICT00000267939.1	0	-	89332634	89378115	0	5	640,107,139,73,1746,	0,7819,8091,8873,43735,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	89332634	89378115	MICT00000267937.1	0	-	89332634	89378115	0	6	640,107,139,73,58,1746,	0,7819,8091,8873,30982,43735,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	89336533	89378115	ENCT00000333322.1	0	-	89336533	89378115	0	6	698,107,126,73,85,1743,	0,3920,4192,4974,27059,39839,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr4	89336533	89378115	ENCT00000333321.1	0	-	89336533	89378115	0	5	709,107,126,73,1746,	0,3920,4192,4974,39836,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr4	89336533	89378061	ENCT00000333320.1	0	-	89336533	89378061	0	5	698,107,126,73,1692,	0,3920,4192,4974,39836,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr4	89363138	89378115	HBMT00001087251.1	0	-	89363138	89378115	0	2	536,1746,	0,13231,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	148490620	148518351	MICT00000272658.1	0	+	148490620	148518351	0	6	590,120,91,123,125,2935,	0,3212,3747,5974,9262,24796,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr4	185279511	185300266	MICT00000275523.1	0	-	185279511	185300266	0	8	1543,1151,2636,123,3395,433,104,62,	0,1681,4652,7467,10055,13690,18083,20693,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185286713	185303456	ENST00000610223.1	0	-	185286713	185303456	0	6	86,123,139,142,104,169,	0,265,6109,6779,10881,16574,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr5	131646977	131705561	ENST00000417795.1	0	-	131646977	131705561	0	8	969,122,142,143,36,93,214,26,	0,20904,23500,38530,48795,53649,55282,58558,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	131646996	131695812	HBMT00001168365.1	0	-	131646996	131695812	0	4	950,122,142,40,	0,20885,23481,48776,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr5	131667881	131695812	ENST00000437091.1	0	-	131667881	131695812	0	5	122,142,143,143,40,	0,2596,17626,20300,27891,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr5	131670408	131695812	FTMT21700026731.1	0	-	131670408	131695812	0	2	211,40,	0,25364,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr5	131676995	131695883	FTMT21700013538.1	0	-	131676995	131695883	0	3	8655,143,111,	0,11186,18777,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr5	131676995	131696150	FTMT21700024292.1	0	-	131676995	131696150	0	3	8655,99,378,	0,11186,18777,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr5	131676995	131705298	FTMT21700049900.1	0	-	131676995	131705298	0	3	8655,6701,190,	0,18777,28113,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr5	131676995	131696150	FTMT21700049899.1	0	-	131676995	131696150	0	3	7510,143,378,	0,8512,18777,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	131676995	131695812	FTMT21700049898.1	0	-	131676995	131695812	0	4	7510,143,143,40,	0,8512,11186,18777,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	131681887	131705298	MICT00000288851.1	0	-	131681887	131705298	0	4	3763,5969,471,190,	0,13885,20115,23221,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	131681887	131705298	MICT00000288850.1	0	-	131681887	131705298	0	4	3763,4861,827,190,	0,13885,19759,23221,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr5	131681887	131705561	MICT00000288852.1	0	-	131681887	131705561	0	3	3763,6701,453,	0,13885,23221,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr5	131687563	131700633	FTMT21700008037.1	0	-	131687563	131700633	0	2	717,4861,	0,8209,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	134812600	134986808	FTMT21900034982.1	0	+	134812600	134986808	0	4	195,140,188,13720,	0,152326,157858,160488,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr5	134812600	134982265	ENCT00000350318.1	0	+	134812600	134982265	0	3	195,140,11807,	0,152326,157858,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	134895247	134986808	FTMT21900041877.1	0	+	134895247	134986808	0	4	93,137,188,13720,	0,69682,75211,77841,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	134903665	134986808	FTMT21900036894.1	0	+	134903665	134986808	0	4	118,140,188,13720,	0,61261,66793,69423,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	134903665	134986808	FTMT21900027000.1	0	+	134903665	134986808	0	4	131,140,188,13720,	0,61261,66793,69423,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	134914863	134986808	FTMT21900030768.1	0	+	134914863	134986808	0	4	424,140,1150,13720,	0,50063,55595,58225,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr5	180673508	180691809	HBMT00001157785.1	0	+	180673508	180691809	0	5	374,13858,304,139,757,	0,607,14573,17120,17544,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	180673508	180695106	ENCT00000354109.1	0	+	180673508	180695106	0	4	878,1777,11424,4478,	0,1254,3453,17120,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr5	180674113	180683846	FTMT21900004791.1	0	+	180674113	180683846	0	2	1587,2194,	0,7539,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr6	12297415	12314475	MICT00000297571.1	0	-	12297415	12314475	0	5	1134,2303,58,105,187,	0,1950,13997,16172,16873,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr6	26733690	26758162	ENCT00000383065.1	0	-	26733690	26758162	0	2	37,2467,	0,22005,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	49228983	49294135	ENCT00000385787.1	0	-	49228983	49294135	0	3	3946,61,300,	0,51676,64852,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr6	58138638	58147635	MICT00000305688.1	0	-	58138638	58147635	0	4	3211,589,111,472,	0,3631,5173,8525,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr6	58138638	58147635	MICT00000305690.1	0	-	58138638	58147635	0	4	3211,97,91,472,	0,3631,4129,8525,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	58141886	58147635	FTMT22100044917.1	0	-	58141886	58147635	0	3	508,91,472,	0,881,5277,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	58143811	58147635	MICT00000305712.1	0	-	58143811	58147635	0	3	111,297,472,	0,2675,3352,
#Partially deleted in new
chr6	62178601	62316498	ENCT00000386323.1	0	-	62178601	62316498	0	2	1401,304,	0,137593,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr6	73329919	73446213	ENCT00000373974.1	0	+	73329919	73446213	0	4	2313,77,120,58136,	0,2319,56899,58158,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	57470605	57471843	FTMT22500038487.1	0	-	57470605	57471843	0	2	236,84,	0,1154,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	75056888	75062509	ENCT00000412989.1	0	-	75056888	75062509	0	2	643,4466,	0,1155,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	75209551	75213434	MICT00000326799.1	0	+	75209551	75213434	0	2	102,508,	0,3375,
#Partially deleted in new
chr7	100550807	100551033	MICT00000329985.1	0	-	100550807	100551033	0	1	226,	0,
#Partially deleted in new
chr7	100555171	100610978	ENCT00000415229.1	0	-	100555171	100610978	0	5	523,587,1095,277,485,	0,51748,52599,54389,55322,
#Partially deleted in new
chr7	100606050	100610978	MICT00000329994.1	0	-	100606050	100610978	0	3	1215,1481,1457,	0,1334,3471,
#Partially deleted in new
chr7	100606050	100608867	MICT00000329987.1	0	-	100606050	100608867	0	3	1456,228,401,	0,1720,2416,
#Partially deleted in new
chr7	100606050	100610978	MICT00000329993.1	0	-	100606050	100610978	0	2	2815,1418,	0,3510,
#Partially deleted in new
chr7	100606050	100609088	MICT00000329990.1	0	-	100606050	100609088	0	2	1456,1318,	0,1720,
#Partially deleted in new
chr7	100606050	100609088	MICT00000329988.1	0	-	100606050	100609088	0	1	3038,	0,
#Partially deleted in new
chr7	100606877	100611410	ENST00000420080.1	0	-	100606877	100611410	0	6	388,122,1095,316,77,85,	0,507,893,2644,3616,4448,
#Partially deleted in new
chr7	100606877	100609088	ENST00000438198.1	0	-	100606877	100609088	0	2	436,1318,	0,893,
#Partially deleted in new
chr7	100607387	100608867	HBMT00001344967.1	0	-	100607387	100608867	0	2	119,1097,	0,383,
#Partially deleted in new
chr7	100611837	100612146	HBMT00001344971.1	0	-	100611837	100612146	0	1	309,	0,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr7	109940674	110230555	ENCT00000416262.1	0	-	109940674	110230555	0	5	64673,96,55,106,459,	0,132193,210442,224838,289422,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr7	110005160	110230555	MICT00000331167.1	0	-	110005160	110230555	0	5	187,96,55,106,459,	0,67707,145956,160352,224936,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr7	110068601	110230450	ENCT00000416269.1	0	-	110068601	110230450	0	5	3766,96,55,106,354,	0,4266,82515,96911,161495,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr7	110138850	110230555	MICT00000331181.1	0	-	110138850	110230555	0	4	88,55,106,459,	0,12266,26662,91246,
#Boundary problem: need 36, got 34, diff 2, mapped 0.9
chr7	128505028	128550763	ENST00000297801.3	0	-	128505028	128550763	0	36	36,153,87,165,102,112,173,143,100,80,121,83,174,94,83,91,86,177,171,183,94,83,174,94,107,186,128,94,80,94,83,88,77,190,143,110,	0,9321,9549,13583,14547,14743,14938,15411,16651,16962,19027,19806,20122,21489,21680,21901,22240,23888,25368,25930,26210,26476,26671,27539,27713,27894,28373,28830,29000,29224,37801,39317,42125,42288,43450,45625,
#Boundary problem: need 44, got 42, diff 2, mapped 1.0
chr7	128506847	128551592	MICT00000332982.1	0	-	128506847	128551592	0	44	2285,1570,104,1435,87,165,102,112,173,143,103,89,100,80,121,83,174,94,83,91,115,177,171,192,94,83,174,94,107,153,82,85,94,80,94,83,94,83,85,77,190,143,128,681,	0,2369,5782,6220,7730,11764,12728,12924,13119,13592,13825,14203,14832,15143,17208,17987,18303,19670,19861,20082,20421,22069,23549,24111,24391,24657,24852,25720,25894,26075,26444,26597,27011,27181,27405,35982,36932,37261,39484,40306,40469,41631,43806,44064,
#Boundary problem: need 50, got 48, diff 2, mapped 1.0
chr7	128506847	128551592	MICT00000332996.1	0	-	128506847	128551592	0	50	2285,376,1110,155,60,133,87,2633,307,165,102,112,430,169,103,89,100,80,121,83,174,779,94,83,91,86,177,171,192,94,83,174,94,107,153,82,85,94,80,94,83,220,94,83,85,77,190,143,128,681,	0,2369,2829,5782,6220,7522,7730,7885,10690,11764,12728,12924,13119,13566,13825,14203,14832,15143,17208,17987,18303,18696,19670,19861,20082,20421,22069,23549,24111,24391,24657,24852,25720,25894,26075,26444,26597,27011,27181,27405,35982,36369,36932,37261,39484,40306,40469,41631,43806,44064,
#Boundary problem: need 44, got 42, diff 2, mapped 1.0
chr7	128506847	128550763	MICT00000332990.1	0	-	128506847	128550763	0	44	2285,376,2724,1435,2788,307,165,102,112,173,143,103,241,100,80,121,83,174,94,83,91,115,177,171,192,94,83,174,94,107,153,82,85,94,80,94,83,94,83,85,77,190,143,110,	0,2369,3162,6220,7730,10690,11764,12728,12924,13119,13592,13825,14203,14832,15143,17208,17987,18303,19670,19861,20082,20421,22069,23549,24111,24391,24657,24852,25720,25894,26075,26444,26597,27011,27181,27405,35982,36932,37261,39484,40306,40469,41631,43806,
#Boundary problem: need 42, got 40, diff 2, mapped 1.0
chr7	128506847	128550763	MICT00000332969.1	0	-	128506847	128550763	0	42	2285,92,90,4826,87,165,102,112,173,143,103,89,100,80,121,83,174,94,83,91,115,1748,192,94,83,174,94,334,82,85,94,80,94,83,220,120,83,85,77,190,143,110,	0,2369,2655,2829,7730,11764,12728,12924,13119,13592,13825,14203,14832,15143,17208,17987,18303,19670,19861,20082,20421,22069,24111,24391,24657,24852,25720,25894,26444,26597,27011,27181,27405,35982,36369,36906,37261,39484,40306,40469,41631,43806,
#Boundary problem: need 48, got 46, diff 2, mapped 1.0
chr7	128506847	128551592	MICT00000332997.1	0	-	128506847	128551592	0	48	2285,376,1110,104,60,133,87,2633,307,165,102,112,430,184,103,89,100,80,121,83,174,94,83,91,86,177,171,192,94,83,174,94,107,153,82,85,94,80,94,83,94,83,85,77,190,143,128,681,	0,2369,2829,5782,6220,7522,7730,7885,10690,11764,12728,12924,13119,13566,13825,14203,14832,15143,17208,17987,18303,19670,19861,20082,20421,22069,23549,24111,24391,24657,24852,25720,25894,26075,26444,26597,27011,27181,27405,35982,36932,37261,39484,40306,40469,41631,43806,44064,
#Boundary problem: need 46, got 44, diff 2, mapped 1.0
chr7	128506847	128551592	MICT00000332978.1	0	-	128506847	128551592	0	46	2285,376,1110,104,60,133,87,307,165,102,112,173,143,103,89,100,80,121,83,174,94,83,91,86,1651,183,94,83,174,94,107,153,82,85,94,80,94,83,94,83,85,77,190,143,212,681,	0,2369,2829,5782,6220,7522,7730,10690,11764,12728,12924,13119,13592,13825,14203,14832,15143,17208,17987,18303,19670,19861,20082,20421,22069,24111,24391,24657,24852,25720,25894,26075,26444,26597,27011,27181,27405,35982,36932,37261,39484,40306,40469,41631,43806,44064,
#Boundary problem: need 41, got 39, diff 2, mapped 1.0
chr7	128506847	128550763	MICT00000332959.1	0	-	128506847	128550763	0	41	2285,376,2724,1435,2788,307,165,102,112,300,143,103,89,100,80,121,83,174,94,86,1651,192,94,83,174,94,107,153,82,85,94,80,94,83,94,83,166,77,190,143,110,	0,2369,3162,6220,7730,10690,11764,12728,12924,13119,13592,13825,14203,14832,15143,17208,17987,18303,19670,20421,22069,24111,24391,24657,24852,25720,25894,26075,26444,26597,27011,27181,27405,35982,36932,37261,39484,40306,40469,41631,43806,
#Boundary problem: need 45, got 43, diff 2, mapped 1.0
chr7	128506847	128551592	MICT00000332977.1	0	-	128506847	128551592	0	45	2285,1570,155,60,133,87,307,165,102,112,173,143,103,89,100,80,121,83,174,94,83,91,86,1651,183,94,83,174,94,107,153,82,85,94,80,94,83,94,83,85,77,190,143,212,681,	0,2369,5782,6220,7522,7730,10690,11764,12728,12924,13119,13592,13825,14203,14832,15143,17208,17987,18303,19670,19861,20082,20421,22069,24111,24391,24657,24852,25720,25894,26075,26444,26597,27011,27181,27405,35982,36932,37261,39484,40306,40469,41631,43806,44064,
#Boundary problem: need 25, got 24, diff 1, mapped 1.0
chr7	128515660	128533913	ENCT00000417266.1	0	-	128515660	128533913	0	25	1705,307,165,102,112,173,143,103,89,100,80,121,172,1461,86,1651,192,94,83,174,94,107,153,82,469,	0,1877,2951,3915,4111,4306,4779,5012,5390,6019,6330,8395,9174,9490,11608,13256,15298,15578,15844,16039,16907,17081,17262,17631,17784,
#Boundary problem: need 40, got 38, diff 2, mapped 0.9
chr7	128516918	128550763	ENST00000476647.2	0	-	128516918	128550763	0	40	447,307,165,102,112,173,143,103,89,100,80,121,83,174,94,83,91,86,177,171,192,94,83,174,94,107,153,82,85,94,80,94,83,94,83,85,77,190,143,110,	0,619,1693,2657,2853,3048,3521,3754,4132,4761,5072,7137,7916,8232,9599,9790,10011,10350,11998,13478,14040,14320,14586,14781,15649,15823,16004,16373,16526,16940,17110,17334,25911,26861,27190,29413,30235,30398,31560,33735,
#Boundary problem: need 38, got 36, diff 2, mapped 0.9
chr7	128516918	128550763	ENST00000441244.2	0	-	128516918	128550763	0	38	447,307,165,102,112,173,143,100,80,121,83,174,94,83,91,86,177,171,183,94,83,174,94,107,153,82,66,17,94,80,94,83,88,77,190,143,31,78,	0,619,1693,2657,2853,3048,3521,4761,5072,7137,7916,8232,9599,9790,10011,10350,11998,13478,14040,14320,14586,14781,15649,15823,16004,16373,16526,16594,16940,17110,17334,25911,27427,30235,30398,31560,33735,33767,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr7	128530000	128543422	ENST00000479474.1	0	-	128530000	128543422	0	14	567,192,94,83,174,94,107,153,82,85,250,94,83,206,	0,958,1238,1504,1699,2567,2741,2922,3291,3444,3858,4252,12829,13216,
#Boundary problem: need 21, got 19, diff 2, mapped 0.9
chr7	128530000	128550763	ENST00000487494.1	0	-	128530000	128550763	0	21	567,192,94,83,174,94,107,153,82,85,94,80,94,83,94,83,85,77,190,143,110,	0,958,1238,1504,1699,2567,2741,2922,3291,3444,3858,4028,4252,12829,13779,14108,16331,17153,17316,18478,20653,
#Partially deleted in new
chr7	142326196	142327052	FTMT22500019441.1	0	-	142326196	142327052	0	2	593,145,	0,711,
#Boundary problem: need 96, got 94, diff 2, mapped 1.0
chr7	149470816	149531446	MICT00000335479.1	0	+	149470816	149531446	0	96	2801,83,180,245,100,159,80,152,172,241,118,176,228,166,235,189,95,135,197,128,110,150,94,170,234,222,338,184,92,232,153,141,183,151,154,55,105,219,128,145,151,73,58,171,144,171,165,180,123,130,126,92,174,165,257,47,171,131,146,95,53,80,170,47,192,171,201,97,200,131,225,42,156,210,132,247,153,47,336,168,131,125,47,279,160,117,139,203,128,143,47,217,96,61,131,1590,	0,3207,3456,3881,4218,5053,5300,5806,6231,6509,8453,9118,9378,9782,10172,11099,11402,12360,13640,13938,14133,14592,14838,15023,15436,15872,16554,17290,17573,17746,18088,18337,18570,18850,19581,19837,21065,21482,21810,22642,22867,23543,24339,26105,26558,28056,28311,29218,29498,29746,29959,30267,31682,32165,33006,34529,34755,35313,35660,37186,37936,38832,39901,40605,40743,41045,41446,41960,42161,43889,44172,44728,44924,45578,46922,47148,47669,47897,48134,48784,49624,49996,50358,50666,51237,51547,52072,52347,52722,52951,53185,54041,54910,55208,57407,59040,
#Boundary problem: need 98, got 96, diff 2, mapped 1.0
chr7	149470816	149531446	MICT00000335474.1	0	+	149470816	149531446	0	98	2801,83,180,245,100,159,80,152,172,241,118,176,228,166,235,189,95,257,1171,197,128,609,94,170,234,222,338,535,92,232,153,141,183,151,154,55,105,219,128,145,151,73,58,171,144,219,165,180,123,130,126,92,174,165,257,183,171,131,146,95,53,171,80,170,47,192,171,201,97,200,167,131,225,42,156,210,168,132,153,47,336,168,131,125,47,279,160,117,139,203,128,143,47,217,96,61,131,1590,	0,3207,3456,3881,4218,5053,5300,5806,6231,6509,8453,9118,9378,9782,10172,11099,11402,11755,12360,13640,13938,14133,14838,15023,15436,15872,16554,16939,17573,17746,18088,18337,18570,18850,19581,19837,21065,21482,21810,22642,22867,23543,24339,26105,26558,28008,28311,29218,29498,29746,29959,30267,31682,32165,33006,34393,34755,35313,35660,37186,37936,38537,38832,39901,40605,40743,41045,41446,41960,42161,42643,43889,44172,44728,44924,45578,45989,46922,47669,47897,48134,48784,49624,49996,50358,50666,51237,51547,52072,52347,52722,52951,53185,54041,54910,55208,57407,59040,
#Boundary problem: need 98, got 96, diff 2, mapped 1.0
chr7	149470816	149531446	MICT00000335487.1	0	+	149470816	149531446	0	98	2801,83,180,437,159,80,152,172,241,145,118,176,228,166,235,189,95,257,1171,197,128,110,150,94,170,234,222,920,92,232,153,141,183,151,154,55,105,219,128,145,151,73,58,171,144,171,165,180,123,130,126,92,174,165,257,397,131,146,95,53,268,171,80,170,47,192,171,201,97,200,167,1133,225,42,156,210,168,132,247,153,573,168,131,125,47,279,160,117,139,203,128,143,47,217,96,61,131,1590,	0,3207,3456,3881,5053,5300,5806,6231,6509,7050,8453,9118,9378,9782,10172,11099,11402,11755,12360,13640,13938,14133,14592,14838,15023,15436,15872,16554,17573,17746,18088,18337,18570,18850,19581,19837,21065,21482,21810,22642,22867,23543,24339,26105,26558,28056,28311,29218,29498,29746,29959,30267,31682,32165,33006,34529,35313,35660,37186,37936,38182,38537,38832,39901,40605,40743,41045,41446,41960,42161,42643,42887,44172,44728,44924,45578,45989,46922,47148,47669,47897,48784,49624,49996,50358,50666,51237,51547,52072,52347,52722,52951,53185,54041,54910,55208,57407,59040,
#Boundary problem: need 58, got 57, diff 1, mapped 1.0
chr7	149470816	149505345	MICT00000335513.1	0	+	149470816	149505345	0	58	918,183,83,180,245,100,159,80,152,172,241,118,176,228,166,235,189,95,257,1171,197,128,110,150,94,170,234,222,338,184,92,232,153,141,183,151,154,55,105,219,128,145,151,73,58,171,144,171,165,180,123,130,126,92,174,165,257,136,	0,2618,3207,3456,3881,4218,5053,5300,5806,6231,6509,8453,9118,9378,9782,10172,11099,11402,11755,12360,13640,13938,14133,14592,14838,15023,15436,15872,16554,17290,17573,17746,18088,18337,18570,18850,19581,19837,21065,21482,21810,22642,22867,23543,24339,26105,26558,28056,28311,29218,29498,29746,29959,30267,31682,32165,33006,34393,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr7	149470816	149492767	ENCT00000406761.1	0	+	149470816	149492767	0	22	3290,670,994,80,152,172,3098,165,235,189,95,257,1706,1537,1602,92,232,153,141,183,2851,141,	0,3456,4218,5300,5806,6231,6509,9783,10172,11099,11402,11755,12360,14133,15872,17573,17746,18088,18337,18570,18850,21810,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr8	2446731	2480459	HBMT00001405031.1	0	-	2446731	2480459	0	5	1609,132,80,150,77,	0,5928,6984,15140,33651,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr8	2447075	2480459	ENST00000515276.2	0	-	2447075	2480459	0	5	1265,139,80,150,77,	0,5580,6640,14796,33307,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr8	2447075	2480459	ENST00000523394.1	0	-	2447075	2480459	0	5	1265,136,80,150,77,	0,5580,6640,14796,33307,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr8	2475963	2480459	ENCT00000431772.1	0	-	2475963	2480459	0	1	4496,	0,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr8	6655897	6693044	MICT00000338110.1	0	-	6655897	6693044	0	7	7887,5778,113,170,185,184,87,	0,8185,17430,23493,26789,34341,37060,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr8	6666037	6693044	ENST00000518724.1	0	-	6666037	6693044	0	7	3823,113,170,210,185,184,87,	0,7290,13353,15005,16649,24201,26920,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	6666037	6693044	ENST00000405979.2	0	-	6666037	6693044	0	8	3823,113,170,210,185,138,184,87,	0,7290,13353,15005,16649,20653,24201,26920,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	6666042	6693044	ENST00000409172.3	0	-	6666042	6693044	0	8	3818,49,63,170,210,185,184,87,	0,7285,7335,13348,15000,16644,24196,26915,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr8	24808467	24814126	ENCT00000433735.1	0	-	24808467	24814126	0	4	1830,322,124,1141,	0,2521,3228,4518,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr8	24808467	24814126	ENCT00000433736.1	0	-	24808467	24814126	0	5	1998,246,43,125,1141,	0,2521,2799,3227,4518,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr8	24808467	24814126	ENST00000221169.5	0	-	24808467	24814126	0	4	1998,321,125,1141,	0,2521,3227,4518,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr8	29411874	29448830	MICT00000341220.1	0	-	29411874	29448830	0	5	4217,148,13183,160,354,	0,8719,20989,35631,36602,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr8	29411874	29448830	MICT00000341219.1	0	-	29411874	29448830	0	5	6318,148,13183,160,354,	0,8719,20989,35631,36602,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30585561	30625138	ENCT00000423590.1	0	+	30585561	30625138	0	8	16233,123,76,118,123,42,74,1396,	0,23351,24990,26625,28720,32843,35228,38181,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30585561	30625138	ENCT00000423592.1	0	+	30585561	30625138	0	8	16416,123,71,123,123,46,70,1396,	0,23351,24990,26620,28720,32843,35232,38181,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30585561	30625138	ENCT00000423594.1	0	+	30585561	30625138	0	8	16233,123,71,123,123,46,70,1396,	0,23351,24990,26620,28720,32843,35232,38181,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30585561	30625138	ENCT00000423593.1	0	+	30585561	30625138	0	8	16233,123,68,123,123,42,74,1396,	0,23351,24993,26620,28720,32843,35228,38181,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30585561	30625138	ENCT00000423591.1	0	+	30585561	30625138	0	8	16416,123,68,123,123,42,74,1396,	0,23351,24993,26620,28720,32843,35228,38181,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30586008	30624739	HBMT00001389731.1	0	+	30586008	30624739	0	8	854,133,123,68,123,42,74,997,	0,15836,22904,24546,28273,32396,34781,37734,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr8	30586008	30624739	HBMT00001389734.1	0	+	30586008	30624739	0	9	854,133,123,68,123,123,42,74,997,	0,15836,22904,24546,26173,28273,32396,34781,37734,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30586008	30624739	HBMT00001389732.1	0	+	30586008	30624739	0	8	854,133,123,71,123,42,74,997,	0,15836,22904,24543,28273,32396,34781,37734,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr8	30586008	30624739	HBMT00001389733.1	0	+	30586008	30624739	0	9	854,133,123,71,123,123,42,74,997,	0,15836,22904,24543,26173,28273,32396,34781,37734,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr8	30586476	30624579	MICT00000341431.1	0	+	30586476	30624579	0	10	386,842,133,123,71,123,123,42,74,837,	0,2569,15368,22436,24075,25705,27805,31928,34313,37266,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr8	30586476	30624518	FTMT23100029773.1	0	+	30586476	30624518	0	9	386,133,123,71,123,123,42,74,776,	0,15368,22436,24075,25705,27805,31928,34313,37266,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30601680	30624522	ENST00000341403.5	0	+	30601680	30624522	0	8	114,123,71,123,42,54,18,780,	0,7232,8871,12601,16724,19109,19165,22062,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30601680	30624518	FTMT23100009430.1	0	+	30601680	30624518	0	8	297,123,68,123,123,42,74,776,	0,7232,8874,10501,12601,16724,19109,22062,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30601680	30623910	ENST00000518239.1	0	+	30601680	30623910	0	8	114,12,71,123,123,42,74,168,	0,7343,8871,10501,12601,16724,19109,22062,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30601680	30624522	ENST00000519246.1	0	+	30601680	30624522	0	8	297,123,71,123,123,42,74,780,	0,7232,8871,10501,12601,16724,19109,22062,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr8	30601680	30624522	ENST00000265616.5	0	+	30601680	30624522	0	9	114,123,71,123,123,42,54,18,780,	0,7232,8871,10501,12601,16724,19109,19165,22062,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30601680	30624522	ENST00000517341.1	0	+	30601680	30624522	0	8	114,123,71,123,123,42,74,780,	0,7232,8871,10501,12601,16724,19109,22062,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr8	30601680	30624522	ENST00000380154.5	0	+	30601680	30624522	0	9	114,12,71,123,123,42,54,18,780,	0,8827,8871,10501,12601,16724,19109,19165,22062,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr8	30601680	30624421	ENST00000523607.1	0	+	30601680	30624421	0	7	114,123,71,123,42,74,679,	0,7232,8871,12601,16724,19109,22062,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30601680	30624518	FTMT23100003918.1	0	+	30601680	30624518	0	8	114,123,68,123,123,42,74,776,	0,7232,8874,10501,12601,16724,19109,22062,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr8	30601934	30625138	ENCT00000423606.1	0	+	30601934	30625138	0	8	43,123,76,118,123,42,74,1396,	0,6978,8617,10252,12347,16470,18855,21808,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr8	30608932	30623959	FTMT23100030003.1	0	+	30608932	30623959	0	6	103,71,123,42,74,217,	0,1619,3249,9472,11857,14810,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr8	123907779	123982911	ENCT00000439970.1	0	-	123907779	123982911	0	4	2913,11639,62,169,	0,4668,66044,74963,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	125740861	125746146	MICT00000350825.1	0	+	125740861	125746146	0	3	1446,63,1540,	0,2437,3745,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	133566179	133592226	ENCT00000430621.1	0	+	133566179	133592226	0	2	150,24484,	0,1563,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	143722247	143751385	ENCT00000441230.1	0	-	143722247	143751385	0	2	25692,2922,	0,26216,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr8	143722247	143751385	ENCT00000441233.1	0	-	143722247	143751385	0	4	3063,13790,4470,6512,	0,3149,17986,22626,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr8	143722772	143763386	MICT00000353026.1	0	-	143722772	143763386	0	6	1251,11463,4638,2045,201,264,	0,1352,12946,23122,28577,40350,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	143743499	143751385	FTMT22900037083.1	0	-	143743499	143751385	0	3	1633,2045,36,	0,2395,7850,
#Partially deleted in new
chr9	68455449	68686313	MICT00000359544.1	0	+	68455449	68686313	0	6	615,1570,32,60,1420,1533,	0,38437,40069,40163,40382,229331,
#Partially deleted in new
chr9	68491473	68691058	MICT00000359550.1	0	+	68491473	68691058	0	2	381,1042,	0,198543,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr9	70638907	70646489	FTMT23400005023.1	0	-	70638907	70646489	0	1	7582,	0,
#Partially deleted in new
chr9	70645613	70646489	ENCT00000456396.1	0	-	70645613	70646489	0	1	876,	0,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr9	136124990	136151402	MICT00000368202.1	0	-	136124990	136151402	0	8	1549,5065,437,48,162,57,70,825,	0,2874,8095,10232,11223,11730,12511,25587,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	136124990	136150617	MICT00000368195.1	0	-	136124990	136150617	0	4	5730,869,4776,40,	0,5884,7805,25587,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr9	136131743	136151250	ENCT00000461757.1	0	-	136131743	136151250	0	6	1786,1548,5967,5205,1452,234,	0,3486,5758,11731,16996,19273,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chrX	10866926	11129258	ENCT00000474570.1	0	-	10866926	11129258	0	5	3177,8288,101,90,256,	0,3252,207129,258094,262076,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	17562899	17578254	MICT00000371906.1	0	-	17562899	17578254	0	4	2645,111,105,40,	0,3077,14329,15315,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	39121646	39159040	FTMT28900003871.1	0	-	39121646	39159040	0	4	255,123,101,64,	0,487,36970,37330,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	44756402	44770244	ENCT00000466652.1	0	+	44756402	44770244	0	4	1155,433,63,11591,	0,1268,1797,2251,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	45599615	45645099	ENCT00000476671.1	0	-	45599615	45645099	0	3	6433,23299,15612,	0,6441,29872,
#Boundary problem: need 10, got 7, diff 3, mapped 0.7
chrX	45599615	45710962	ENCT00000476681.1	0	-	45599615	45710962	0	10	13797,712,2248,12755,3034,18965,4515,4466,98,179,	0,13803,14698,16985,75274,78314,97317,101838,109193,111168,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chrX	45645219	45710962	ENCT00000476688.1	0	-	45645219	45710962	0	6	17749,4903,28458,9019,99,178,	0,18049,23217,51681,63589,65565,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	45645219	45708065	ENCT00000476685.1	0	-	45645219	45708065	0	2	51675,11159,	0,51687,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	45645219	45708065	ENCT00000476684.1	0	-	45645219	45708065	0	2	51675,11163,	0,51683,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	45707327	45710962	ENST00000414772.1	0	-	45707327	45710962	0	2	321,2154,	0,1481,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	45710343	45715294	MICT00000373851.1	0	+	45710343	45715294	0	2	148,1029,	0,3922,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	48520698	48549567	ENCT00000476911.1	0	-	48520698	48549567	0	2	11261,15839,	0,13030,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chrX	50108401	50213824	MICT00000374777.1	0	-	50108401	50213824	0	27	3617,124,111,142,161,134,114,108,97,108,97,105,229,100,92,82,140,109,184,103,123,107,136,105,81,111,792,	0,5023,6321,10621,11355,12695,13174,14223,14577,17092,18764,19316,20954,22150,23123,24924,26033,26937,27748,35633,37657,38087,38645,54999,57042,58844,104631,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chrX	50108401	50213824	MICT00000374778.1	0	-	50108401	50213824	0	27	3617,124,111,87,142,161,134,114,108,97,108,97,105,100,92,82,140,109,184,103,123,107,136,105,81,111,792,	0,5023,6321,9568,10621,11355,12695,13174,14223,14577,17092,18764,19316,22150,23123,24924,26033,26937,27748,35633,37657,38087,38645,54999,57042,58844,104631,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chrX	50108406	50174666	ENCT00000477147.1	0	-	50108406	50174666	0	28	3612,124,111,87,142,161,134,114,108,97,108,97,105,229,100,92,82,140,109,184,103,123,107,136,105,81,112,208,	0,5018,6316,9563,10616,11350,12690,13169,14218,14572,17087,18759,19311,20949,22145,23118,24919,26028,26932,27743,35628,37652,38082,38640,54994,57037,58839,66052,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chrX	50108406	50174666	ENCT00000477146.1	0	-	50108406	50174666	0	28	3612,124,111,87,142,161,134,114,108,97,108,97,105,229,100,92,82,140,109,184,103,123,107,136,105,81,111,209,	0,5018,6316,9563,10616,11350,12690,13169,14218,14572,17087,18759,19311,20949,22145,23118,24919,26028,26932,27743,35628,37652,38082,38640,54994,57037,58839,66051,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chrX	50108406	50174640	ENCT00000477145.1	0	-	50108406	50174640	0	27	3612,124,111,142,161,134,114,108,97,108,97,105,229,100,92,82,140,109,184,103,123,107,136,105,81,111,183,	0,5018,6316,10616,11350,12690,13169,14218,14572,17087,18759,19311,20949,22145,23118,24919,26028,26932,27743,35628,37652,38082,38640,54994,57037,58839,66051,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chrX	50108406	50213824	ENCT00000477148.1	0	-	50108406	50213824	0	26	3612,124,111,142,161,134,114,108,97,108,97,105,229,100,92,82,140,109,184,103,123,107,136,105,111,792,	0,5018,6316,10616,11350,12690,13169,14218,14572,17087,18759,19311,20949,22145,23118,24919,26028,26932,27743,35628,37652,38082,38640,54994,58839,104626,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chrX	50108407	50213824	ENST00000376025.2	0	-	50108407	50213824	0	28	3611,124,111,87,142,161,134,114,108,97,108,97,105,229,100,92,82,140,109,184,103,123,107,136,105,81,111,792,	0,5017,6315,9562,10615,11349,12689,13168,14217,14571,17086,18758,19310,20948,22144,23117,24918,26027,26931,27742,35627,37651,38081,38639,54993,57036,58838,104625,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chrX	50110443	50174640	FTMT28900027752.1	0	-	50110443	50174640	0	28	1575,124,111,87,142,161,134,114,108,97,108,97,105,229,100,92,82,140,109,184,103,123,107,136,105,81,111,183,	0,2981,4279,7526,8579,9313,10653,11132,12181,12535,15050,16722,17274,18912,20108,21081,22882,23991,24895,25706,33591,35615,36045,36603,52957,55000,56802,64014,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	72822064	72831574	ENCT00000468517.1	0	+	72822064	72831574	0	2	7701,1777,	0,7733,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	113214048	113220990	MICT00000378983.1	0	+	113214048	113220990	0	3	46,109,740,	0,4900,6202,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	113214048	113220954	HBMT00001539698.1	0	+	113214048	113220954	0	3	46,142,717,	0,4867,6189,
#Partially deleted in new
chrX	140048729	140085846	MICT00000380941.1	0	+	140048729	140085846	0	5	77,89,255,185,251,	0,7459,30830,36034,36866,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chrX	148608607	148620828	MICT00000381414.1	0	-	148608607	148620828	0	10	1290,721,81,174,263,685,283,82,58,572,	0,1637,2442,5809,6557,7128,8624,9098,11039,11649,
#Boundary problem: need 8, got 6, diff 2, mapped 0.8
chrX	148609133	148621593	ENST00000609369.1	0	-	148609133	148621593	0	8	792,43,236,818,146,58,183,333,	0,4411,5221,6031,10031,10513,11123,12127,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chrX	149108352	149142091	ENCT00000473263.1	0	+	149108352	149142091	0	7	752,83,171,846,89,7820,5245,	0,3883,5723,6367,8171,20631,28494,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chrX	149108352	149142091	ENCT00000473259.1	0	+	149108352	149142091	0	6	752,40,245,1661,20280,5245,	0,3926,5649,6380,8171,28494,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chrX	149108352	149142091	ENCT00000473257.1	0	+	149108352	149142091	0	8	752,83,171,174,89,129,6002,5245,	0,3883,5723,7039,8171,20686,22449,28494,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chrX	149108931	149142091	ENCT00000473266.1	0	+	149108931	149142091	0	6	1137,37,171,174,20280,5245,	0,3350,5144,6460,7592,27915,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chrX	149112726	149142091	ENCT00000473270.1	0	+	149112726	149142091	0	5	62,681,13776,6002,5245,	0,839,2665,18075,24120,
#Partially deleted in new
chrX	149583468	149584809	MICT00000381642.1	0	-	149583468	149584809	0	1	1341,	0,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chrX	151938325	151982768	ENCT00000473491.1	0	+	151938325	151982768	0	6	36,59,60,110,145,8626,	0,1013,20920,21729,34542,35817,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chrX	151938325	151978593	MICT00000381976.1	0	+	151938325	151978593	0	6	36,59,60,110,145,4451,	0,1013,20920,21729,34542,35817,