# gffcompare v0.10.1 | Command line was:
#/users/rg/buszczynska/bin/gffcompare/gffcompare -N -M -r gen.lncRNAs.hg38.gtf gen.lncRNAs.hg38.gtf -o gen.genOverlap
#

#= Summary for dataset: gen.lncRNAs.hg38.gtf 
#     Query mRNAs :   23912 in   12185 loci  (23912 multi-exon transcripts)
#            (3670 multi-transcript loci, ~2.0 transcripts per locus)
# Reference mRNAs :   23945 in   12185 loci  (23945 multi-exon)
# Super-loci w/ reference transcripts:    11802
#-----------------| Sensitivity | Precision  |
        Base level:   100.0     |   100.0    |
        Exon level:   100.0     |   100.0    |
      Intron level:    99.1     |    99.1    |
Intron chain level:    99.9     |   100.0    |
  Transcript level:    99.9     |   100.0    |
       Locus level:   100.0     |   100.0    |

     Matching intron chains:   23912
       Matching transcripts:   23912
              Matching loci:   12185

          Missed exons:       0/64307	(  0.0%)
           Novel exons:       0/64250	(  0.0%)
        Missed introns:     342/41633	(  0.8%)
         Novel introns:       0/41633	(  0.0%)
           Missed loci:       0/12185	(  0.0%)
            Novel loci:       0/12185	(  0.0%)

 Total union super-loci across all input datasets: 12185 
23912 out of 23912 consensus transcripts written in gen.genOverlap.annotated.gtf (0 discarded as redundant)