# gffcompare v0.10.1 | Command line was:
#/users/rg/buszczynska/bin/gffcompare/gffcompare -N -M -r gen.lncRNAs.hg38.gtf mitrans.lncRNAs.hg38.gtf -o mitrans.genOverlap
#

#= Summary for dataset: mitrans.lncRNAs.hg38.gtf 
#     Query mRNAs :  183775 in   43666 loci  (183775 multi-exon transcripts)
#            (24764 multi-transcript loci, ~4.2 transcripts per locus)
# Reference mRNAs :   23945 in   12185 loci  (23945 multi-exon)
# Super-loci w/ reference transcripts:     7633
#-----------------| Sensitivity | Precision  |
        Base level:    58.4     |     4.0    |
        Exon level:    24.8     |     5.2    |
      Intron level:    47.0     |     8.4    |
Intron chain level:    18.8     |     2.5    |
  Transcript level:    18.8     |     2.5    |
       Locus level:    30.6     |     8.4    |

     Matching intron chains:    4506
       Matching transcripts:    4506
              Matching loci:    3723

          Missed exons:   23571/64307	( 36.7%)
           Novel exons:  271479/327208	( 83.0%)
        Missed introns:   12736/41633	( 30.6%)
         Novel introns:  182706/232971	( 78.4%)
           Missed loci:    3339/12185	( 27.4%)
            Novel loci:   34734/43666	( 79.5%)

 Total union super-loci across all input datasets: 43170 
183775 out of 183775 consensus transcripts written in mitrans.genOverlap.annotated.gtf (0 discarded as redundant)