#Partially deleted in new
chr1	345575	644119	T000039_T000039	0	+	345575	644119	0	2	328,252,	0,298292,
#Boundary problem: need 29, got 28, diff 1, mapped 1.0
chr1	1548724	1570682	T000867_T000867	0	+	1548724	1570682	0	29	2289,107,94,172,107,195,143,108,105,163,134,149,157,161,127,234,179,20,79,66,2082,131,140,515,165,111,127,336,148,	0,3163,10044,10429,11450,11646,11941,12201,13305,13492,13729,13951,14328,14674,14928,15144,15788,16040,16143,16294,16947,19437,19635,19842,20402,20643,20856,21102,21810,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1548724	1570682	T000865_T000865	0	+	1548724	1570682	0	28	2289,107,52,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,3163,10086,10429,11450,11646,11941,12201,13305,13492,13729,13951,14328,14674,14928,15144,15788,16040,16294,16947,19437,19635,19842,20402,20643,20856,21102,21810,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1548724	1570682	T000873_T000873	0	+	1548724	1570682	0	28	2756,107,311,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,3163,10044,10429,11450,11646,11941,12201,13305,13492,13729,13951,14328,14674,14928,15144,15788,16040,16294,16947,19437,19635,19842,20402,20643,20856,21102,21810,
#Boundary problem: need 25, got 24, diff 1, mapped 1.0
chr1	1548724	1570682	T000868_T000868	0	+	1548724	1570682	0	25	2289,107,52,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,375,581,336,148,	0,3163,10086,10429,11450,11646,11941,12201,13305,13492,13729,13951,14328,14674,14928,15144,15788,16040,16294,16947,19437,19635,20402,21102,21810,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1548724	1570682	T000871_T000871	0	+	1548724	1570682	0	28	2289,107,311,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,168,165,111,127,336,148,	0,3163,10044,10429,11450,11646,11941,12201,13305,13492,13729,13951,14328,14674,14928,15144,15788,16040,16294,16947,19437,19635,19842,20402,20643,20856,21102,21810,
#Boundary problem: need 29, got 28, diff 1, mapped 1.0
chr1	1548724	1570682	T000874_T000874	0	+	1548724	1570682	0	29	2756,107,94,172,107,195,143,108,105,163,134,149,157,161,127,234,179,20,79,66,2082,131,140,515,165,111,127,336,148,	0,3163,10044,10429,11450,11646,11941,12201,13305,13492,13729,13951,14328,14674,14928,15144,15788,16040,16143,16294,16947,19437,19635,19842,20402,20643,20856,21102,21810,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1548724	1570682	T000872_T000872	0	+	1548724	1570682	0	28	2756,107,269,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,3163,10086,10429,11450,11646,11941,12201,13305,13492,13729,13951,14328,14674,14928,15144,15788,16040,16294,16947,19437,19635,19842,20402,20643,20856,21102,21810,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1548724	1570682	T000870_T000870	0	+	1548724	1570682	0	27	2289,107,52,172,107,195,143,108,846,163,134,149,157,381,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,3163,10086,10429,11450,11646,11941,12201,12564,13492,13729,13951,14328,14674,15144,15788,16040,16294,16947,19437,19635,19842,20402,20643,20856,21102,21810,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1548724	1570682	T000866_T000866	0	+	1548724	1570682	0	28	2756,107,52,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,3163,10086,10429,11450,11646,11941,12201,13305,13492,13729,13951,14328,14674,14928,15144,15788,16040,16294,16947,19437,19635,19842,20402,20643,20856,21102,21810,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1548724	1570682	T000869_T000869	0	+	1548724	1570682	0	28	2289,107,269,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,3163,10086,10429,11450,11646,11941,12201,13305,13492,13729,13951,14328,14674,14928,15144,15788,16040,16294,16947,19437,19635,19842,20402,20643,20856,21102,21810,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1548978	1570682	T000879_T000879	0	+	1548978	1570682	0	28	2502,107,269,172,107,195,143,108,846,163,134,149,157,161,127,234,179,182,66,2082,131,140,168,165,111,127,336,148,	0,2909,9832,10175,11196,11392,11687,11947,12310,13238,13475,13697,14074,14420,14674,14890,15534,15786,16040,16693,19183,19381,19588,20148,20389,20602,20848,21556,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1548978	1570682	T000878_T000878	0	+	1548978	1570682	0	27	2035,107,94,172,107,195,143,108,846,163,134,149,157,381,234,278,182,66,2082,131,140,515,165,111,127,336,148,	0,2909,9790,10175,11196,11392,11687,11947,12310,13238,13475,13697,14074,14420,14890,15435,15786,16040,16693,19183,19381,19588,20148,20389,20602,20848,21556,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1548978	1570682	T000877_T000877	0	+	1548978	1570682	0	27	2502,107,6622,172,107,195,143,108,105,163,134,149,157,381,234,278,182,66,2082,131,140,515,165,111,127,336,148,	0,2909,3479,10175,11196,11392,11687,11947,13051,13238,13475,13697,14074,14420,14890,15435,15786,16040,16693,19183,19381,19588,20148,20389,20602,20848,21556,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr1	1548994	1570682	T000884_T000884	0	+	1548994	1570682	0	26	2019,107,311,172,107,221,143,1209,163,134,149,157,381,234,278,182,66,2082,131,140,515,165,111,127,336,148,	0,2893,9774,10159,11180,11350,11671,11931,13222,13459,13681,14058,14404,14874,15419,15770,16024,16677,19167,19365,19572,20132,20373,20586,20832,21540,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr1	1548994	1570682	T000880_T000880	0	+	1548994	1570682	0	26	2019,107,311,172,107,195,143,1209,163,134,534,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2893,9774,10159,11180,11376,11671,11931,13222,13459,13681,14404,14658,14874,15518,15770,16024,16677,19167,19365,19572,20132,20373,20586,20832,21540,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr1	1548994	1570682	T000881_T000881	0	+	1548994	1570682	0	26	2019,107,269,172,107,195,143,1209,163,134,149,157,381,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2893,9816,10159,11180,11376,11671,11931,13222,13459,13681,14058,14404,14874,15518,15770,16024,16677,19167,19365,19572,20132,20373,20586,20832,21540,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1548994	1570682	T000882_T000882	0	+	1548994	1570682	0	28	2486,107,311,172,107,195,143,108,105,163,134,149,157,161,127,234,278,182,66,2082,131,140,515,165,111,127,336,148,	0,2893,9774,10159,11180,11376,11671,11931,13035,13222,13459,13681,14058,14404,14658,14874,15419,15770,16024,16677,19167,19365,19572,20132,20373,20586,20832,21540,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1548994	1570682	T000883_T000883	0	+	1548994	1570682	0	28	2019,107,269,172,107,195,143,108,105,163,134,534,161,127,234,179,20,79,66,2082,131,140,515,165,111,127,336,148,	0,2893,9816,10159,11180,11376,11671,11931,13035,13222,13459,13681,14404,14658,14874,15518,15770,15873,16024,16677,19167,19365,19572,20132,20373,20586,20832,21540,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1548998	1570682	T000886_T000886	0	+	1548998	1570682	0	28	2015,107,249,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2889,9812,10155,11176,11372,11667,11927,13031,13218,13455,13677,14054,14400,14654,14870,15514,15766,16020,16673,19163,19361,19568,20128,20369,20582,20828,21536,
#Boundary problem: need 29, got 28, diff 1, mapped 1.0
chr1	1548998	1570682	T000885_T000885	0	+	1548998	1570682	0	29	2015,107,6622,172,107,195,143,108,105,163,134,149,157,161,127,234,179,20,79,66,2082,131,140,515,165,111,127,336,148,	0,2889,3459,10155,11176,11372,11667,11927,13031,13218,13455,13677,14054,14400,14654,14870,15514,15766,15869,16020,16673,19163,19361,19568,20128,20369,20582,20828,21536,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549009	1570682	T000887_T000887	0	+	1549009	1570682	0	28	2453,107,269,172,107,195,143,108,105,163,134,149,237,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2878,9801,10144,11165,11361,11656,11916,13020,13207,13444,13666,13963,14389,14643,14859,15503,15755,16009,16662,19152,19350,19557,20117,20358,20571,20817,21525,
#Boundary problem: need 29, got 28, diff 1, mapped 1.0
chr1	1549017	1570682	T000894_T000894	0	+	1549017	1570682	0	29	1996,107,638,52,172,107,195,143,96,846,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2870,3440,9793,10136,11157,11353,11648,11920,12271,13199,13436,13658,14035,14381,14635,14851,15495,15747,16001,16654,19144,19342,19549,20109,20350,20563,20809,21517,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549017	1570682	T000891_T000891	0	+	1549017	1570682	0	28	2463,107,249,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2870,9793,10136,11157,11353,11648,11908,13012,13199,13436,13658,14035,14381,14635,14851,15495,15747,16001,16654,19144,19342,19549,20109,20350,20563,20809,21517,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1549017	1570682	T000889_T000889	0	+	1549017	1570682	0	27	1996,1208,269,172,107,195,143,108,846,163,134,149,157,381,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2870,9793,10136,11157,11353,11648,11908,12271,13199,13436,13658,14035,14381,14851,15495,15747,16001,16654,19144,19342,19549,20109,20350,20563,20809,21517,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549017	1570682	T000892_T000892	0	+	1549017	1570682	0	28	2463,107,311,172,107,195,143,108,105,163,134,200,241,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2870,9751,10136,11157,11353,11648,11908,13012,13199,13436,13658,13951,14381,14635,14851,15495,15747,16001,16654,19144,19342,19549,20109,20350,20563,20809,21517,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549017	1570682	T000890_T000890	0	+	1549017	1570682	0	28	1996,107,269,172,107,195,143,108,846,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2870,9793,10136,11157,11353,11648,11908,12271,13199,13436,13658,14035,14381,14635,14851,15495,15747,16001,16654,19144,19342,19549,20109,20350,20563,20809,21517,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549017	1570682	T000893_T000893	0	+	1549017	1570682	0	28	1996,107,291,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2870,9751,10136,11157,11353,11648,11908,13012,13199,13436,13658,14035,14381,14635,14851,15495,15747,16001,16654,19144,19342,19549,20109,20350,20563,20809,21517,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549028	1570682	T000896_T000896	0	+	1549028	1570682	0	28	1985,107,269,172,107,221,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2859,9782,10125,11146,11316,11637,11897,13001,13188,13425,13647,14024,14370,14624,14840,15484,15736,15990,16643,19133,19331,19538,20098,20339,20552,20798,21506,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549028	1570682	T000895_T000895	0	+	1549028	1570682	0	28	1985,107,52,172,107,221,143,108,846,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2859,9782,10125,11146,11316,11637,11897,12260,13188,13425,13647,14024,14370,14624,14840,15484,15736,15990,16643,19133,19331,19538,20098,20339,20552,20798,21506,
#Boundary problem: need 29, got 28, diff 1, mapped 1.0
chr1	1549028	1570682	T000897_T000897	0	+	1549028	1570682	0	29	1985,107,638,269,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2859,3429,9782,10125,11146,11342,11637,11897,13001,13188,13425,13647,14024,14370,14624,14840,15484,15736,15990,16643,19133,19331,19538,20098,20339,20552,20798,21506,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549043	1570682	T000900_T000900	0	+	1549043	1570682	0	28	1970,107,52,172,107,195,143,108,846,163,134,149,157,161,127,234,278,182,66,2082,131,140,515,165,111,127,336,148,	0,2844,9767,10110,11131,11327,11622,11882,12245,13173,13410,13632,14009,14355,14609,14825,15370,15721,15975,16628,19118,19316,19523,20083,20324,20537,20783,21491,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549043	1570682	T000898_T000898	0	+	1549043	1570682	0	28	2437,107,311,172,107,195,143,108,846,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2844,9725,10110,11131,11327,11622,11882,12245,13173,13410,13632,14009,14355,14609,14825,15469,15721,15975,16628,19118,19316,19523,20083,20324,20537,20783,21491,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1549043	1570682	T000899_T000899	0	+	1549043	1570682	0	27	1970,107,311,172,107,195,143,108,846,163,134,149,157,161,127,234,179,182,66,2082,131,140,780,111,127,336,148,	0,2844,9725,10110,11131,11327,11622,11882,12245,13173,13410,13632,14009,14355,14609,14825,15469,15721,15975,16628,19118,19316,19468,20324,20537,20783,21491,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549052	1570682	T000905_T000905	0	+	1549052	1570682	0	28	1961,107,311,172,107,195,143,108,63,105,163,134,149,157,381,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2835,9716,10101,11122,11318,11613,11873,12236,12977,13164,13401,13623,14000,14346,14816,15460,15712,15966,16619,19109,19307,19514,20074,20315,20528,20774,21482,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549052	1570682	T000901_T000901	0	+	1549052	1570682	0	28	1961,107,52,172,107,195,143,108,105,163,134,149,157,161,127,234,278,182,66,2082,131,140,515,165,111,127,336,148,	0,2835,9758,10101,11122,11318,11613,11873,12977,13164,13401,13623,14000,14346,14600,14816,15361,15712,15966,16619,19109,19307,19514,20074,20315,20528,20774,21482,
#Boundary problem: need 29, got 28, diff 1, mapped 1.0
chr1	1549052	1570682	T000902_T000902	0	+	1549052	1570682	0	29	1961,107,638,269,172,107,195,143,108,846,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2835,3405,9758,10101,11122,11318,11613,11873,12236,13164,13401,13623,14000,14346,14600,14816,15460,15712,15966,16619,19109,19307,19514,20074,20315,20528,20774,21482,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1549052	1570682	T000906_T000906	0	+	1549052	1570682	0	27	2428,107,269,172,107,195,143,108,105,163,134,149,202,381,234,278,182,66,2082,131,140,515,165,111,127,336,148,	0,2835,9758,10101,11122,11318,11613,11873,12977,13164,13401,13623,13955,14346,14816,15361,15712,15966,16619,19109,19307,19514,20074,20315,20528,20774,21482,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549052	1570682	T000903_T000903	0	+	1549052	1570682	0	28	2428,107,311,172,107,195,143,108,105,163,134,149,202,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2835,9716,10101,11122,11318,11613,11873,12977,13164,13401,13623,13955,14346,14600,14816,15460,15712,15966,16619,19109,19307,19514,20074,20315,20528,20774,21482,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1549052	1570682	T000904_T000904	0	+	1549052	1570682	0	27	1961,107,269,172,107,195,143,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2835,9758,10101,11122,11318,11613,12977,13164,13401,13623,14000,14346,14600,14816,15460,15712,15966,16619,19109,19307,19514,20074,20315,20528,20774,21482,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549116	1570682	T000907_T000907	0	+	1549116	1570682	0	28	1897,107,269,172,107,195,143,96,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2771,9694,10037,11058,11254,11549,11821,12913,13100,13337,13559,13936,14282,14536,14752,15396,15648,15902,16555,19045,19243,19450,20010,20251,20464,20710,21418,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549138	1570682	T000909_T000909	0	+	1549138	1570682	0	28	1875,107,94,172,107,195,143,108,655,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2749,9630,10015,11036,11232,11527,11787,12341,13078,13315,13537,13914,14260,14514,14730,15374,15626,15880,16533,19023,19221,19428,19988,20229,20442,20688,21396,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1549138	1570682	T000911_T000911	0	+	1549138	1570682	0	27	1875,107,52,172,107,195,143,108,105,163,134,149,157,161,127,234,179,66,2082,131,140,515,165,111,127,336,148,	0,2749,9672,10015,11036,11232,11527,11787,12891,13078,13315,13537,13914,14260,14514,14730,15374,15880,16533,19023,19221,19428,19988,20229,20442,20688,21396,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1549138	1570682	T000910_T000910	0	+	1549138	1570682	0	27	1875,107,249,172,107,195,143,108,105,163,134,149,157,161,127,234,179,66,2082,131,140,515,165,111,127,336,148,	0,2749,9672,10015,11036,11232,11527,11787,12891,13078,13315,13537,13914,14260,14514,14730,15374,15880,16533,19023,19221,19428,19988,20229,20442,20688,21396,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1549138	1570682	T000908_T000908	0	+	1549138	1570682	0	28	1875,107,311,172,107,195,143,108,655,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,2749,9630,10015,11036,11232,11527,11787,12341,13078,13315,13537,13914,14260,14514,14730,15374,15626,15880,16533,19023,19221,19428,19988,20229,20442,20688,21396,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1551013	1570682	T000912_T000912	0	+	1551013	1570682	0	28	467,107,94,172,107,195,143,108,846,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,874,7755,8140,9161,9357,9652,9912,10275,11203,11440,11662,12039,12385,12639,12855,13499,13751,14005,14658,17148,17346,17553,18113,18354,18567,18813,19521,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1551013	1570682	T000914_T000914	0	+	1551013	1570682	0	28	467,107,52,172,107,195,143,108,846,163,134,200,241,161,127,234,278,182,66,2082,131,140,515,165,111,127,336,148,	0,874,7797,8140,9161,9357,9652,9912,10275,11203,11440,11662,11955,12385,12639,12855,13400,13751,14005,14658,17148,17346,17553,18113,18354,18567,18813,19521,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr1	1551013	1570682	T000913_T000913	0	+	1551013	1570682	0	28	467,107,291,172,107,195,143,108,846,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,874,7755,8140,9161,9357,9652,9912,10275,11203,11440,11662,12039,12385,12639,12855,13499,13751,14005,14658,17148,17346,17553,18113,18354,18567,18813,19521,
#Boundary problem: need 29, got 28, diff 1, mapped 1.0
chr1	1551333	1570682	T000915_T000915	0	+	1551333	1570682	0	29	147,107,269,172,107,195,143,96,105,163,134,149,157,161,127,234,179,20,79,66,2082,131,140,515,165,111,127,336,148,	0,554,7477,7820,8841,9037,9332,9604,10696,10883,11120,11342,11719,12065,12319,12535,13179,13431,13534,13685,14338,16828,17026,17233,17793,18034,18247,18493,19201,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1551348	1570682	T000916_T000916	0	+	1551348	1570682	0	27	132,107,52,172,107,195,143,108,105,163,134,149,157,161,127,234,179,66,2082,131,140,515,165,111,127,336,148,	0,539,7462,7805,8826,9022,9317,9577,10681,10868,11105,11327,11704,12050,12304,12520,13164,13670,14323,16813,17011,17218,17778,18019,18232,18478,19186,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1551357	1570682	T000917_T000917	0	+	1551357	1570682	0	27	123,107,291,172,107,195,143,108,105,163,134,149,157,381,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,530,7411,7796,8817,9013,9308,9568,10672,10859,11096,11318,11695,12041,12511,13155,13407,13661,14314,16804,17002,17209,17769,18010,18223,18469,19177,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1552457	1570682	T000919_T000919	0	+	1552457	1570682	0	27	6602,172,107,195,143,108,105,163,134,149,157,161,127,234,179,20,79,66,2082,131,140,515,165,111,127,336,148,	0,6696,7717,7913,8208,8468,9572,9759,9996,10218,10595,10941,11195,11411,12055,12307,12410,12561,13214,15704,15902,16109,16669,16910,17123,17369,18077,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1552457	1570682	T000920_T000920	0	+	1552457	1570682	0	27	438,269,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,6353,6696,7717,7913,8208,8468,9572,9759,9996,10218,10595,10941,11195,11411,12055,12307,12561,13214,15704,15902,16109,16669,16910,17123,17369,18077,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr1	1552457	1570682	T000918_T000918	0	+	1552457	1570682	0	26	6405,172,107,195,143,108,105,163,134,149,157,161,127,234,278,182,66,2082,131,140,515,165,111,127,336,148,	0,6696,7717,7913,8208,8468,9572,9759,9996,10218,10595,10941,11195,11411,11956,12307,12561,13214,15704,15902,16109,16669,16910,17123,17369,18077,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr1	1553095	1570682	T000922_T000922	0	+	1553095	1570682	0	23	5984,172,107,195,143,108,846,163,134,149,157,161,127,234,179,182,66,2082,140,725,340,336,148,	0,6058,7079,7275,7570,7830,8193,9121,9358,9580,9957,10303,10557,10773,11417,11669,11923,12576,15264,15471,16272,16731,17439,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr1	1553095	1570682	T000924_T000924	0	+	1553095	1570682	0	26	5964,172,107,195,143,108,655,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,6058,7079,7275,7570,7830,8384,9121,9358,9580,9957,10303,10557,10773,11417,11669,11923,12576,15066,15264,15471,16031,16272,16485,16731,17439,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	1553095	1570682	T000925_T000925	0	+	1553095	1570682	0	27	5767,172,107,195,143,108,105,163,134,149,157,161,127,234,179,20,79,66,2082,131,140,515,165,111,127,336,148,	0,6058,7079,7275,7570,7830,8934,9121,9358,9580,9957,10303,10557,10773,11417,11669,11772,11923,12576,15066,15264,15471,16031,16272,16485,16731,17439,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr1	1553095	1570682	T000923_T000923	0	+	1553095	1570682	0	26	5984,172,107,195,143,96,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,6058,7079,7275,7570,7842,8934,9121,9358,9580,9957,10303,10557,10773,11417,11669,11923,12576,15066,15264,15471,16031,16272,16485,16731,17439,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr1	1553095	1570682	T000926_T000926	0	+	1553095	1570682	0	26	5984,172,107,195,143,108,655,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,6058,7079,7275,7570,7830,8384,9121,9358,9580,9957,10303,10557,10773,11417,11669,11923,12576,15066,15264,15471,16031,16272,16485,16731,17439,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr1	1553095	1570682	T000921_T000921	0	+	1553095	1570682	0	26	5767,172,107,195,143,96,105,163,134,149,157,161,127,234,179,182,66,2082,131,140,515,165,111,127,336,148,	0,6058,7079,7275,7570,7842,8934,9121,9358,9580,9957,10303,10557,10773,11417,11669,11923,12576,15066,15264,15471,16031,16272,16485,16731,17439,
#Partially deleted in new
chr1	1573178	1584529	T000947_T000947	0	+	1573178	1584529	0	2	592,10642,	0,709,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	2632121	2696487	T001408_T001408	0	+	2632121	2696487	0	5	21,2939,1253,768,1731,	0,56760,59781,61116,62635,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	2688596	2696487	T001412_T001412	0	+	2688596	2696487	0	6	3224,81,1091,213,445,1731,	0,3306,3468,4629,4964,6160,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	2688648	2696487	T001413_T001413	0	+	2688648	2696487	0	5	151,1570,1287,2148,1731,	0,233,1885,3254,6108,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	2690684	2696487	T001414_T001414	0	+	2690684	2696487	0	6	731,120,81,1091,768,1731,	0,1016,1218,1380,2553,4072,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	2691940	2694614	T001416_T001416	0	-	2691940	2694614	0	2	59,2534,	0,140,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	10445902	10450097	T002911_T002911	0	-	10445902	10450097	0	2	46,3801,	0,394,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	12762741	12773915	T003334_T003334	0	-	12762741	12773915	0	2	1226,7256,	0,3918,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	12762741	12773915	T003337_T003337	0	-	12762741	12773915	0	2	1226,6539,	0,4635,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr1	12868239	12873286	T003362_T003362	0	+	12868239	12873286	0	3	455,800,3341,	0,550,1706,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	13208477	13212589	T003395_T003395	0	+	13208477	13212589	0	2	650,1223,	0,2889,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	41825536	41892040	T009012_T009012	0	+	41825536	41892040	0	5	2480,7380,47,1238,716,	0,21751,34154,64277,65788,
#Boundary problem: need 29, got 28, diff 1, mapped 1.0
chr1	53692578	53905447	T011235_T011235	0	-	53692578	53905447	0	29	238,83,59,281,3346,2621,173,69,225,153,142,140,119,228,175,126,120,123,129,123,120,629,580,858,1193,14534,966,139,11917,	0,1965,8670,11454,12299,17529,23783,28210,30333,31412,33557,35161,35539,37262,39566,44121,44320,48724,53680,62660,99966,100882,101968,103776,105075,169102,185396,190621,200952,
#Boundary problem: need 25, got 24, diff 1, mapped 1.0
chr1	53708384	53905447	T011247_T011247	0	-	53708384	53905447	0	25	4344,173,69,153,142,140,119,228,175,126,120,39,123,387,129,123,120,629,580,858,1193,14534,966,139,11917,	0,7977,12404,15606,17751,19355,19733,21456,23760,28315,28514,29891,32918,33979,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 25, got 24, diff 1, mapped 1.0
chr1	53708384	53905447	T011254_T011254	0	-	53708384	53905447	0	25	4344,177,173,69,225,153,142,140,119,228,175,126,120,123,129,123,120,629,580,858,1193,14534,966,139,11917,	0,6667,7977,12404,14527,15606,17751,19355,19733,21456,23760,28315,28514,32918,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr1	53708384	53905447	T011241_T011241	0	-	53708384	53905447	0	27	4344,177,173,69,225,153,142,140,119,228,175,126,120,39,123,387,129,123,120,629,580,858,1193,14534,966,139,11917,	0,6667,7977,12404,14527,15606,17751,19355,19733,21456,23760,28315,28514,29891,32918,33979,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr1	53708384	53905447	T011246_T011246	0	-	53708384	53905447	0	24	4344,173,69,225,153,142,140,119,228,175,120,39,123,129,123,120,629,580,858,1193,14534,966,139,11917,	0,7977,12404,14527,15606,17751,19355,19733,21456,23760,28514,29891,32918,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 25, got 24, diff 1, mapped 1.0
chr1	53708384	53905447	T011255_T011255	0	-	53708384	53905447	0	25	4344,173,69,225,153,142,140,119,228,175,126,120,39,123,129,123,120,629,580,858,1193,14534,966,139,11917,	0,7977,12404,14527,15606,17751,19355,19733,21456,23760,28315,28514,29891,32918,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 25, got 24, diff 1, mapped 1.0
chr1	53708384	53905447	T011250_T011250	0	-	53708384	53905447	0	25	4344,177,173,69,153,142,140,119,228,175,126,120,123,387,129,123,120,629,580,858,1193,14534,966,139,11917,	0,6667,7977,12404,15606,17751,19355,19733,21456,23760,28315,28514,32918,33979,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr1	53708384	53905447	T011249_T011249	0	-	53708384	53905447	0	23	4344,173,69,225,153,142,140,119,228,175,126,120,129,123,120,629,580,858,1193,14534,966,139,11917,	0,7977,12404,14527,15606,17751,19355,19733,21456,23760,28315,28514,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr1	53708384	53905447	T011243_T011243	0	-	53708384	53905447	0	26	4344,177,173,69,225,153,142,140,119,228,175,126,120,123,387,129,123,120,629,580,858,1193,14534,966,139,11917,	0,6667,7977,12404,14527,15606,17751,19355,19733,21456,23760,28315,28514,32918,33979,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 25, got 24, diff 1, mapped 1.0
chr1	53708384	53905447	T011256_T011256	0	-	53708384	53905447	0	25	4344,173,69,225,153,142,140,119,228,175,126,120,123,387,129,123,120,629,580,858,1193,14534,966,139,11917,	0,7977,12404,14527,15606,17751,19355,19733,21456,23760,28315,28514,32918,33979,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr1	53708384	53905447	T011252_T011252	0	-	53708384	53905447	0	26	4344,173,69,225,153,142,140,119,228,175,126,120,39,123,387,129,123,120,629,580,858,1193,14534,966,139,11917,	0,7977,12404,14527,15606,17751,19355,19733,21456,23760,28315,28514,29891,32918,33979,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 25, got 24, diff 1, mapped 1.0
chr1	53708384	53905447	T011245_T011245	0	-	53708384	53905447	0	25	4344,177,173,69,153,142,140,119,228,175,126,120,39,123,129,123,120,629,580,858,1193,14534,966,139,11917,	0,6667,7977,12404,15606,17751,19355,19733,21456,23760,28315,28514,29891,32918,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr1	53708384	53905447	T011242_T011242	0	-	53708384	53905447	0	24	4344,177,173,69,153,142,140,119,228,175,126,120,123,129,123,120,629,580,858,1193,14534,966,139,11917,	0,6667,7977,12404,15606,17751,19355,19733,21456,23760,28315,28514,32918,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr1	53708384	53905447	T011253_T011253	0	-	53708384	53905447	0	26	4344,177,173,69,225,153,142,140,119,228,175,126,120,39,123,129,123,120,629,580,858,1193,14534,966,139,11917,	0,6667,7977,12404,14527,15606,17751,19355,19733,21456,23760,28315,28514,29891,32918,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr1	53708384	53905447	T011244_T011244	0	-	53708384	53905447	0	24	4344,177,173,69,225,153,142,140,119,228,175,120,123,129,123,120,629,580,858,1193,14534,966,139,11917,	0,6667,7977,12404,14527,15606,17751,19355,19733,21456,23760,28514,32918,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr1	53708384	53905447	T011251_T011251	0	-	53708384	53905447	0	24	4344,173,69,225,153,142,140,119,228,175,126,120,123,129,123,120,629,580,858,1193,14534,966,139,11917,	0,7977,12404,14527,15606,17751,19355,19733,21456,23760,28315,28514,32918,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr1	53708384	53905447	T011248_T011248	0	-	53708384	53905447	0	24	2622,1243,173,69,153,142,140,119,228,175,126,120,123,129,123,120,629,580,858,1193,14534,966,139,11917,	0,3101,7977,12404,15606,17751,19355,19733,21456,23760,28315,28514,32918,37874,46854,84160,85076,86162,87970,89269,153296,169590,174815,185146,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	53839637	53905447	T011279_T011279	0	-	53839637	53905447	0	7	5837,571,13770,13685,966,139,11917,	0,7184,8777,22892,38337,43562,53893,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	53839637	53905278	T011278_T011278	0	-	53839637	53905278	0	8	5837,571,11616,4971,9681,966,139,11748,	0,7184,8777,21850,26896,38337,43562,53893,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	53839637	53905447	T011280_T011280	0	-	53839637	53905447	0	6	5837,571,27800,966,124,22248,	0,7184,8777,38337,41435,43562,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	53851881	53900990	T011282_T011282	0	+	53851881	53900990	0	3	12770,27550,2088,	0,19370,47021,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	53870911	53900990	T011285_T011285	0	+	53870911	53900990	0	3	500,26527,2088,	0,1363,27991,
#Partially deleted in new
chr1	103732258	103817816	T016313_T016313	0	+	103732258	103817816	0	2	418,46,	0,85512,
#Partially deleted in new
chr1	103739859	103835961	T016315_T016315	0	-	103739859	103835961	0	4	281,110,87,181,	0,2382,92317,95921,
#Partially deleted in new
chr1	103803463	104068116	T016316_T016316	0	-	103803463	104068116	0	5	169,87,206,51,99,	0,168445,172049,208500,264554,
#Partially deleted in new
chr1	103803463	104068116	T016317_T016317	0	-	103803463	104068116	0	4	169,87,206,99,	0,168445,172049,264554,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	116714438	116766743	T018005_T018005	0	-	116714438	116766743	0	4	6337,513,106,126,	0,6624,9597,52179,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	121130933	121205358	T018601_T018601	0	+	121130933	121205358	0	4	511,7588,167,3486,	0,643,8547,70939,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	121130933	121172087	T018600_T018600	0	+	121130933	121172087	0	5	511,7588,167,83,1198,	0,643,8547,38908,39956,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	121130933	121172087	T018599_T018599	0	+	121130933	121172087	0	4	511,7588,83,1198,	0,643,38908,39956,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	121483950	121485436	T018636_T018636	0	+	121483950	121485436	0	2	244,223,	0,1263,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr1	121484049	121485436	T018637_T018637	0	+	121484049	121485436	0	1	1387,	0,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr1	121484052	121485436	T018639_T018639	0	-	121484052	121485436	0	1	1384,	0,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	121484052	121485436	T018638_T018638	0	-	121484052	121485436	0	2	655,390,	0,994,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	121484420	121485436	T018640_T018640	0	+	121484420	121485436	0	2	624,52,	0,964,
#Partially deleted in new
chr1	142647930	142891012	T018686_T018686	0	-	142647930	142891012	0	9	12267,2262,92,54,3717,268,88,59,199,	0,40283,44170,45031,133888,157163,167986,240808,242883,
#Partially deleted in new
chr1	142647930	142891012	T018687_T018687	0	-	142647930	142891012	0	8	12267,2262,92,54,3717,268,59,199,	0,40283,44170,45031,133888,157163,240808,242883,
#Partially deleted in new
chr1	142647930	142891051	T018688_T018688	0	-	142647930	142891051	0	12	12267,2262,92,54,3717,392,2690,268,88,60,59,238,	0,40283,44170,45031,133888,153375,153989,157163,167986,236815,240808,242883,
#Partially deleted in new
chr1	142647930	142888797	T018683_T018683	0	-	142647930	142888797	0	11	12267,2262,92,54,3717,392,2690,283,88,60,59,	0,40283,44170,45031,133888,153375,153989,157163,167986,236815,240808,
#Partially deleted in new
chr1	142647930	142891009	T018685_T018685	0	-	142647930	142891009	0	12	12267,2262,92,54,3717,392,2690,268,88,59,241,73,	0,40283,44170,45031,133888,153375,153989,157163,167986,240808,242283,243006,
#Partially deleted in new
chr1	142647930	142891009	T018684_T018684	0	-	142647930	142891009	0	11	12267,2262,92,54,3717,392,2690,268,88,59,196,	0,40283,44170,45031,133888,153375,153989,157163,167986,240808,242883,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	142781021	142891014	T018695_T018695	0	-	142781021	142891014	0	6	842,3188,283,88,59,201,	0,1326,24072,34895,107717,109792,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	142781021	142891012	T018692_T018692	0	-	142781021	142891012	0	3	4514,59,199,	0,107717,109792,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	142781021	142891014	T018696_T018696	0	-	142781021	142891014	0	4	842,3188,59,201,	0,1326,107717,109792,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	142781021	142816007	T018689_T018689	0	-	142781021	142816007	0	6	842,3188,392,3017,268,91,	0,1326,20284,20898,24072,34895,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	142781021	142891012	T018693_T018693	0	-	142781021	142891012	0	7	319,3717,283,88,60,59,199,	0,797,24072,34895,103724,107717,109792,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	142781021	142891012	T018690_T018690	0	-	142781021	142891012	0	5	4514,268,88,59,199,	0,24072,34895,107717,109792,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	142781021	142891013	T018694_T018694	0	-	142781021	142891013	0	5	4514,268,88,59,182,	0,24072,34895,107717,109810,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	142781021	142891012	T018691_T018691	0	-	142781021	142891012	0	6	4514,268,88,60,59,199,	0,24072,34895,103724,107717,109792,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	142781021	142891014	T018697_T018697	0	-	142781021	142891014	0	6	842,3188,268,88,59,201,	0,1326,24072,34895,107717,109792,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr1	143118592	143234944	T018744_T018744	0	+	143118592	143234944	0	3	17,59,3666,	0,468,112686,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr1	143118592	143234944	T018745_T018745	0	+	143118592	143234944	0	3	17,59,3651,	0,468,112701,
#Partially deleted in new
chr1	143119060	143206172	T018749_T018749	0	+	143119060	143206172	0	2	59,434,	0,86678,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr1	143119060	143234944	T018750_T018750	0	+	143119060	143234944	0	3	59,268,2898,	0,112233,112986,
#Partially deleted in new
chr1	143119060	143206172	T018748_T018748	0	+	143119060	143206172	0	3	59,134,434,	0,86350,86678,
#Partially deleted in new
chr1	143119061	143234944	T018752_T018752	0	+	143119061	143234944	0	4	58,88,45,3651,	0,101572,107297,112232,
#Partially deleted in new
chr1	143119063	143257201	T018755_T018755	0	+	143119063	143257201	0	4	56,955,3187,2713,	0,112230,131754,135425,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr1	143119063	143234944	T018753_T018753	0	+	143119063	143234944	0	3	56,283,2898,	0,112215,112983,
#Partially deleted in new
chr1	143119063	143234944	T018754_T018754	0	+	143119063	143234944	0	5	56,88,45,268,2898,	0,101570,107295,112230,112983,
#Partially deleted in new
chr1	143143720	143190655	T018758_T018758	0	+	143143720	143190655	0	4	11151,7965,196,1233,	0,25771,45108,45702,
#Partially deleted in new
chr1	143149360	143190655	T018759_T018759	0	+	143149360	143190655	0	3	12748,196,1233,	0,39468,40062,
#Partially deleted in new
chr1	143149360	143190655	T018760_T018760	0	+	143149360	143190655	0	3	28096,196,1233,	0,39468,40062,
#Partially deleted in new
chr1	143244794	143257201	T018788_T018788	0	+	143244794	143257201	0	3	1122,8038,2713,	0,1172,9694,
#Partially deleted in new
chr1	143279553	143467781	T018791_T018791	0	-	143279553	143467781	0	4	4945,60,59,933,	0,182730,185826,187295,
#Partially deleted in new
chr1	143279553	143467814	T018792_T018792	0	-	143279553	143467814	0	4	4945,60,59,244,	0,182730,185826,188017,
#Partially deleted in new
chr1	143279553	143467814	T018793_T018793	0	-	143279553	143467814	0	3	4945,59,244,	0,185826,188017,
#Partially deleted in new
chr1	143283105	143465413	T018794_T018794	0	+	143283105	143465413	0	2	207,94,	0,182214,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr1	143283165	143419349	T018796_T018796	0	+	143283165	143419349	0	17	147,692,31,70,1751,29,73,71,164,195,2918,150,282,214,54,2440,15960,	0,64253,72096,74807,77142,81683,81803,87829,91944,93484,93811,97298,108402,109277,110825,116529,120224,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr1	143283165	143432466	T018797_T018797	0	+	143283165	143432466	0	19	147,692,31,70,1751,29,73,71,164,195,2918,150,282,214,54,1840,1008,1148,19,	0,64253,72096,74807,77142,81683,81803,87829,91944,93484,93811,97298,108402,109277,110825,116529,118522,120274,149282,
#Partially deleted in new
chr1	143283165	143349088	T018795_T018795	0	+	143283165	143349088	0	2	147,1670,	0,64253,
#Partially deleted in new
chr1	143644576	143746101	T018869_T018869	0	-	143644576	143746101	0	5	2352,199,319,209,1901,	0,3255,19301,75170,99624,
#Partially deleted in new
chr1	143647291	143748351	T018872_T018872	0	-	143647291	143748351	0	10	739,109,1499,84,265,209,54,467,1183,364,	0,6670,15406,66175,70716,72455,95948,96540,97219,100696,
#Partially deleted in new
chr1	143647291	143746101	T018870_T018870	0	-	143647291	143746101	0	5	739,319,209,121,1901,	0,16586,72455,73753,96909,
#Partially deleted in new
chr1	143647291	143748351	T018871_T018871	0	-	143647291	143748351	0	9	739,319,84,265,209,54,467,1183,364,	0,16586,66175,70716,72455,95948,96540,97219,100696,
#Partially deleted in new
chr1	143662697	143745105	T018873_T018873	0	-	143662697	143745105	0	3	1499,209,905,	0,57049,81503,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	143686833	143717413	T018878_T018878	0	+	143686833	143717413	0	7	476,236,52,315,157,119,691,	0,18177,22432,23155,25640,26533,29889,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	143686833	143717413	T018877_T018877	0	+	143686833	143717413	0	9	476,236,130,94,52,315,123,119,691,	0,18177,19870,21868,22432,23155,25640,26533,29889,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	143686833	143717413	T018880_T018880	0	+	143686833	143717413	0	9	476,236,130,127,52,315,123,119,691,	0,18177,19870,21868,22432,23155,25640,26533,29889,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	143686833	143717413	T018879_T018879	0	+	143686833	143717413	0	8	476,236,127,52,315,123,97,691,	0,18177,21868,22432,23155,25640,26555,29889,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	143686833	143717413	T018875_T018875	0	+	143686833	143717413	0	8	476,236,127,52,315,123,119,691,	0,18177,21868,22432,23155,25640,26533,29889,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	143686833	143717413	T018876_T018876	0	+	143686833	143717413	0	7	476,236,94,52,315,119,691,	0,18177,21868,22432,23155,26533,29889,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	143686970	143717413	T018883_T018883	0	+	143686970	143717413	0	9	339,236,130,94,52,315,123,97,691,	0,18040,19733,21731,22295,23018,25503,26418,29752,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	143686970	143717413	T018889_T018889	0	+	143686970	143717413	0	8	339,236,94,52,315,157,119,691,	0,18040,21731,22295,23018,25503,26396,29752,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	143686970	143717413	T018888_T018888	0	+	143686970	143717413	0	9	339,236,1375,94,52,315,123,119,691,	0,18040,18488,21731,22295,23018,25503,26396,29752,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	143686983	143717413	T018899_T018899	0	+	143686983	143717413	0	7	326,236,127,1038,123,97,691,	0,18027,21718,22282,25490,26405,29739,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	143686983	143717413	T018898_T018898	0	+	143686983	143717413	0	7	326,236,510,1038,123,97,691,	0,18027,21718,22282,25490,26405,29739,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	143686983	143717413	T018890_T018890	0	+	143686983	143717413	0	8	326,236,127,52,315,157,119,691,	0,18027,21718,22282,23005,25490,26383,29739,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	143686983	143717413	T018893_T018893	0	+	143686983	143717413	0	8	326,236,127,83,315,123,97,691,	0,18027,21718,22282,23005,25490,26405,29739,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	143686983	143717413	T018897_T018897	0	+	143686983	143717413	0	8	326,236,94,52,315,123,119,691,	0,18027,21718,22282,23005,25490,26383,29739,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	143686983	143717413	T018891_T018891	0	+	143686983	143717413	0	7	326,236,127,1038,157,119,691,	0,18027,21718,22282,25490,26383,29739,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	143686983	143717413	T018894_T018894	0	+	143686983	143717413	0	8	326,236,94,52,315,123,97,691,	0,18027,21718,22282,23005,25490,26405,29739,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	143686994	143717413	T018901_T018901	0	+	143686994	143717413	0	5	315,236,52,315,691,	0,18016,22271,22994,29728,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	143686994	143717413	T018902_T018902	0	+	143686994	143717413	0	7	315,236,52,315,123,97,691,	0,18016,22271,22994,25479,26394,29728,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	143686994	143717413	T018903_T018903	0	+	143686994	143717413	0	7	315,236,52,315,123,119,691,	0,18016,22271,22994,25479,26372,29728,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	143686998	143717413	T018907_T018907	0	+	143686998	143717413	0	6	311,236,315,123,97,691,	0,18012,22990,25475,26390,29724,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	143686998	143717413	T018904_T018904	0	+	143686998	143717413	0	8	311,236,130,52,315,157,119,691,	0,18012,19705,22267,22990,25475,26368,29724,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	143686998	143717413	T018908_T018908	0	+	143686998	143717413	0	9	311,236,130,127,83,315,123,119,691,	0,18012,19705,21703,22267,22990,25475,26368,29724,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	143686998	143717413	T018911_T018911	0	+	143686998	143717413	0	6	311,236,315,123,119,691,	0,18012,22990,25475,26368,29724,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	143686998	143717413	T018906_T018906	0	+	143686998	143717413	0	6	311,236,315,157,119,691,	0,18012,22990,25475,26368,29724,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	143686998	143717413	T018912_T018912	0	+	143686998	143717413	0	9	311,236,130,127,52,315,123,97,691,	0,18012,19705,21703,22267,22990,25475,26390,29724,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	143686998	143717413	T018905_T018905	0	+	143686998	143717413	0	8	311,236,130,52,315,123,97,691,	0,18012,19705,22267,22990,25475,26390,29724,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	143687045	143717413	T018915_T018915	0	+	143687045	143717413	0	9	264,236,118,127,52,315,123,119,691,	0,17965,18413,21656,22220,22943,25428,26321,29677,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	143687047	143717413	T018916_T018916	0	+	143687047	143717413	0	9	262,236,130,94,52,315,157,119,691,	0,17963,19656,21654,22218,22941,25426,26319,29675,
#Partially deleted in new
chr1	143713129	143746098	T018918_T018918	0	-	143713129	143746098	0	5	421,209,121,98,1588,	0,6617,7915,31071,31381,
#Partially deleted in new
chr1	143713129	143746088	T018917_T018917	0	-	143713129	143746088	0	5	421,120,209,71,1578,	0,5023,6617,31071,31381,
#Partially deleted in new
chr1	143713129	143746101	T018921_T018921	0	-	143713129	143746101	0	4	421,120,209,1901,	0,5023,6617,31071,
#Partially deleted in new
chr1	143713129	143746101	T018922_T018922	0	-	143713129	143746101	0	5	421,120,209,121,1901,	0,5023,6617,7915,31071,
#Partially deleted in new
chr1	143713129	143746101	T018920_T018920	0	-	143713129	143746101	0	3	421,209,1901,	0,6617,31071,
#Partially deleted in new
chr1	143713129	143746098	T018919_T018919	0	-	143713129	143746098	0	6	421,265,209,121,98,1588,	0,4878,6617,7915,31071,31381,
#Partially deleted in new
chr1	143718272	143746066	T018925_T018925	0	-	143718272	143746066	0	4	1683,121,98,736,	0,2772,25928,27058,
#Partially deleted in new
chr1	143718272	143746101	T018930_T018930	0	-	143718272	143746101	0	3	1683,121,1901,	0,2772,25928,
#Partially deleted in new
chr1	143718272	143745105	T018924_T018924	0	-	143718272	143745105	0	3	1561,98,595,	0,25928,26238,
#Partially deleted in new
chr1	143718272	143746098	T018927_T018927	0	-	143718272	143746098	0	5	1683,121,54,524,1588,	0,2772,24967,25502,26238,
#Partially deleted in new
chr1	143718272	143745105	T018923_T018923	0	-	143718272	143745105	0	3	1683,98,595,	0,25928,26238,
#Partially deleted in new
chr1	143718272	143750106	T018931_T018931	0	-	143718272	143750106	0	3	1683,1493,2119,	0,25928,29715,
#Partially deleted in new
chr1	143718272	143746066	T018926_T018926	0	-	143718272	143746066	0	5	1683,121,54,524,736,	0,2772,24967,25502,27058,
#Partially deleted in new
chr1	143718272	143750106	T018932_T018932	0	-	143718272	143750106	0	4	1683,121,1493,2119,	0,2772,25928,29715,
#Partially deleted in new
chr1	143718272	143746101	T018929_T018929	0	-	143718272	143746101	0	4	914,209,121,1901,	0,1474,2772,25928,
#Partially deleted in new
chr1	143718272	143746101	T018928_T018928	0	-	143718272	143746101	0	4	1683,121,54,2327,	0,2772,24967,25502,
#Partially deleted in new
chr1	143742981	143745823	T018933_T018933	0	+	143742981	143745823	0	3	279,174,659,	0,1092,2183,
#Partially deleted in new
chr1	143743094	143746108	T018934_T018934	0	-	143743094	143746108	0	2	1204,1598,	0,1416,
#Partially deleted in new
chr1	143743094	143750106	T018935_T018935	0	-	143743094	143750106	0	3	199,1862,2119,	0,737,4893,
#Partially deleted in new
chr1	143746595	143748627	T018936_T018936	0	-	143746595	143748627	0	2	525,640,	0,1392,
#Partially deleted in new
chr1	143879380	143881527	T018943_T018943	0	+	143879380	143881527	0	2	558,1054,	0,1093,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr1	144045455	144095746	T018952_T018952	0	-	144045455	144095746	0	1	50291,	0,
#Partially deleted in new
chr1	144300993	144522647	T018956_T018956	0	-	144300993	144522647	0	3	543,55,1874,	0,218819,219780,
#Partially deleted in new
chr1	144478278	144522656	T018964_T018964	0	-	144478278	144522656	0	2	3487,1883,	0,42495,
#Partially deleted in new
chr1	144478278	144544403	T018968_T018968	0	-	144478278	144544403	0	7	2706,466,55,1473,155,185,283,	0,3021,41534,42495,46268,65555,65842,
#Partially deleted in new
chr1	144478278	144522611	T018963_T018963	0	-	144478278	144522611	0	3	2706,347,1838,	0,3140,42495,
#Partially deleted in new
chr1	144478278	144522603	T018962_T018962	0	-	144478278	144522603	0	3	2706,56,1830,	0,3431,42495,
#Partially deleted in new
chr1	144478278	144524699	T018966_T018966	0	-	144478278	144524699	0	3	3487,1473,153,	0,42495,46268,
#Partially deleted in new
chr1	144478278	144544403	T018967_T018967	0	-	144478278	144544403	0	6	3487,55,1473,155,185,283,	0,41534,42495,46268,65555,65842,
#Partially deleted in new
chr1	144478278	144522656	T018965_T018965	0	-	144478278	144522656	0	3	3487,55,1883,	0,41534,42495,
#Partially deleted in new
chr1	144505927	144524699	T018971_T018971	0	-	144505927	144524699	0	3	509,1473,153,	0,14846,18619,
#Partially deleted in new
chr1	144505927	144522642	T018969_T018969	0	-	144505927	144522642	0	2	509,1869,	0,14846,
#Partially deleted in new
chr1	144505927	144522647	T018970_T018970	0	-	144505927	144522647	0	3	509,55,1874,	0,13885,14846,
#Partially deleted in new
chr1	144505927	144544403	T018972_T018972	0	-	144505927	144544403	0	6	509,55,1473,155,185,283,	0,13885,14846,18619,37906,38193,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	144523155	144544403	T018973_T018973	0	-	144523155	144544403	0	5	523,155,1949,185,283,	0,1391,9862,20678,20965,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	144532319	144544594	T018975_T018975	0	-	144532319	144544594	0	3	2647,185,474,	0,11514,11801,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	144572561	144581427	T018985_T018985	0	+	144572561	144581427	0	5	121,110,161,57,177,	0,2541,2799,3782,8689,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	144572561	144581427	T018986_T018986	0	+	144572561	144581427	0	4	121,161,57,177,	0,2799,3782,8689,
#Partially deleted in new
chr1	144572578	144576742	T018987_T018987	0	+	144572578	144576742	0	3	104,161,399,	0,2782,3765,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr1	144572578	144576742	T018988_T018988	0	+	144572578	144576742	0	4	104,110,161,399,	0,2524,2782,3765,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	144572829	144576742	T018990_T018990	0	+	144572829	144576742	0	4	23,110,161,399,	0,2273,2531,3514,
#Partially deleted in new
chr1	144574216	144576742	T018991_T018991	0	+	144574216	144576742	0	2	1305,399,	0,2127,
#Partially deleted in new
chr1	144580204	144583571	T018992_T018992	0	+	144580204	144583571	0	1	3367,	0,
#Partially deleted in new
chr1	144580294	144583071	T018993_T018993	0	-	144580294	144583071	0	2	1051,1163,	0,1614,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	144583682	144586395	T019030_T019030	0	-	144583682	144586395	0	2	335,1466,	0,1247,
#Partially deleted in new
chr1	144672419	144686426	T019105_T019105	0	-	144672419	144686426	0	5	54,2194,176,124,6534,	0,2178,4454,4819,7473,
#Partially deleted in new
chr1	144672419	144709014	T019107_T019107	0	-	144672419	144709014	0	4	4630,124,77,828,	0,4819,7473,35767,
#Partially deleted in new
chr1	144672419	144686426	T019106_T019106	0	-	144672419	144686426	0	4	4372,176,124,6534,	0,4454,4819,7473,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	144693639	144703596	T019108_T019108	0	-	144693639	144703596	0	3	106,2470,5900,	0,1189,4057,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr1	144693965	144710723	T019110_T019110	0	+	144693965	144710723	0	4	578,2748,2011,10412,	0,882,4174,6346,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr1	144693965	144710723	T019112_T019112	0	+	144693965	144710723	0	1	16758,	0,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	144693965	144710723	T019111_T019111	0	+	144693965	144710723	0	2	578,15876,	0,882,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	144703710	144710725	T019113_T019113	0	-	144703710	144710725	0	2	3581,3299,	0,3716,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	144968935	144994657	T019172_T019172	0	+	144968935	144994657	0	2	4585,18943,	0,6779,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	144969023	144994657	T019174_T019174	0	+	144969023	144994657	0	2	835,24495,	0,1139,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	144996983	145019032	T019177_T019177	0	+	144996983	145019032	0	3	7677,9046,2645,	0,7799,19404,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145116344	145122167	T019193_T019193	0	-	145116344	145122167	0	2	41,5183,	0,640,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145116398	145122167	T019194_T019194	0	-	145116398	145122167	0	2	25,5300,	0,469,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145116812	145121499	T019196_T019196	0	-	145116812	145121499	0	2	306,2177,	0,2510,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145116812	145121909	T019197_T019197	0	-	145116812	145121909	0	2	125,4611,	0,486,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145116812	145122167	T019199_T019199	0	-	145116812	145122167	0	2	2077,2845,	0,2510,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145116812	145122287	T019200_T019200	0	-	145116812	145122287	0	2	2075,2965,	0,2510,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145116812	145122165	T019198_T019198	0	-	145116812	145122165	0	2	993,4110,	0,1243,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	145152736	145167403	T019207_T019207	0	+	145152736	145167403	0	3	424,127,11978,	0,1250,2689,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145152991	145167403	T019208_T019208	0	+	145152991	145167403	0	2	169,13417,	0,995,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	145153067	145167403	T019210_T019210	0	+	145153067	145167403	0	4	93,127,135,11023,	0,919,2358,3313,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	145153067	145167403	T019209_T019209	0	+	145153067	145167403	0	3	93,1574,11023,	0,919,3313,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145154493	145167403	T019211_T019211	0	+	145154493	145167403	0	2	2037,10477,	0,2433,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145199584	145208980	T019217_T019217	0	-	145199584	145208980	0	2	2935,130,	0,9266,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	145370258	145382721	T019321_T019321	0	-	145370258	145382721	0	4	4554,1423,149,666,	0,4766,6285,11797,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	145370258	145382653	T019313_T019313	0	-	145370258	145382653	0	4	6189,149,1030,598,	0,6285,6758,11797,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	145370258	145382055	T019309_T019309	0	-	145370258	145382055	0	4	3249,1105,149,5039,	0,5084,6285,6758,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	145370258	145380508	T019308_T019308	0	-	145370258	145380508	0	3	6189,149,3492,	0,6285,6758,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	145370258	145382653	T019312_T019312	0	-	145370258	145382653	0	5	6189,149,295,346,598,	0,6285,6758,7442,11797,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	145370258	145382653	T019311_T019311	0	-	145370258	145382653	0	5	6189,149,246,346,598,	0,6285,6758,7442,11797,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	145370258	145382653	T019315_T019315	0	-	145370258	145382653	0	6	3249,1105,149,295,346,598,	0,5084,6285,6758,7442,11797,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145376770	145380508	T019324_T019324	0	-	145376770	145380508	0	2	541,2808,	0,930,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	145438388	145450557	T019340_T019340	0	+	145438388	145450557	0	9	664,73,148,103,257,157,152,1696,217,	0,1204,1389,1649,1880,2243,2513,2794,11952,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	145438432	145450557	T019341_T019341	0	+	145438432	145450557	0	9	620,75,148,103,257,157,152,1696,217,	0,1158,1345,1605,1836,2199,2469,2750,11908,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	145438433	145442629	T019342_T019342	0	+	145438433	145442629	0	8	619,76,148,103,257,157,152,1447,	0,1156,1344,1604,1835,2198,2468,2749,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145589673	145592246	T019452_T019452	0	+	145589673	145592246	0	2	40,1046,	0,1527,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	145704248	145707860	T019470_T019470	0	+	145704248	145707860	0	2	1827,1671,	0,1941,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	145743157	145753488	T019481_T019481	0	-	145743157	145753488	0	3	2339,83,4213,	0,5159,6118,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	146353368	146373356	T019557_T019557	0	-	146353368	146373356	0	3	15734,742,564,	0,16116,19424,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	146353368	146373398	T019558_T019558	0	-	146353368	146373398	0	2	15734,3914,	0,16116,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	146471151	146472337	T019597_T019597	0	+	146471151	146472337	0	2	665,425,	0,761,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	146472961	146475928	T019602_T019602	0	-	146472961	146475928	0	2	930,1473,	0,1494,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	146472961	146475699	T019600_T019600	0	-	146472961	146475699	0	2	930,1712,	0,1026,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	146472961	146475699	T019599_T019599	0	-	146472961	146475699	0	3	930,149,1244,	0,1026,1494,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	146548416	146551321	T019645_T019645	0	-	146548416	146551321	0	2	21,2793,	0,112,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	146731603	146738171	T019695_T019695	0	-	146731603	146738171	0	2	3073,3409,	0,3159,
#Boundary problem: need 7, got 5, diff 2, mapped 0.7
chr1	146852472	147002719	T019707_T019707	0	-	146852472	147002719	0	7	3299,112,111,156,743,166,10311,	0,4001,133685,134871,136793,139569,139936,
#Boundary problem: need 7, got 5, diff 2, mapped 0.7
chr1	146852472	147002719	T019705_T019705	0	-	146852472	147002719	0	7	3299,196,111,156,743,166,10311,	0,3917,133685,134871,136793,139569,139936,
#Boundary problem: need 8, got 6, diff 2, mapped 0.8
chr1	146852472	147002719	T019708_T019708	0	-	146852472	147002719	0	8	3299,196,162,111,156,743,166,10311,	0,3917,98093,133685,134871,136793,139569,139936,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	146852472	146989689	T019702_T019702	0	-	146852472	146989689	0	5	1770,196,111,156,424,	0,3917,133685,134871,136793,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr1	146852472	147002719	T019706_T019706	0	-	146852472	147002719	0	6	4113,111,156,743,166,10311,	0,133685,134871,136793,139569,139936,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	146852472	146989742	T019704_T019704	0	-	146852472	146989742	0	5	1810,196,111,156,477,	0,3917,133685,134871,136793,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	146852472	146989689	T019703_T019703	0	-	146852472	146989689	0	5	1810,112,111,156,424,	0,4001,133685,134871,136793,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr1	146979437	147002719	T019715_T019715	0	-	146979437	147002719	0	6	130,111,156,743,166,10311,	0,6720,7906,9828,12604,12971,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	147101125	147109177	T019738_T019738	0	+	147101125	147109177	0	3	628,2503,2704,	0,1112,5348,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	147142666	147171418	T019742_T019742	0	+	147142666	147171418	0	4	398,1705,240,347,	0,514,27063,28405,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	147171452	147177914	T019746_T019746	0	-	147171452	147177914	0	2	1915,4366,	0,2096,
#Boundary problem: need 2, got 0, diff 2, mapped 0.0
chr1	147533468	147534571	T019777_T019777	0	+	147533468	147534571	0	2	304,620,	0,483,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	147633500	147636447	T019787_T019787	0	+	147633500	147636447	0	2	1771,1027,	0,1920,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	147724233	147727923	T019798_T019798	0	-	147724233	147727923	0	2	1509,846,	0,2844,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	147724233	147727923	T019799_T019799	0	-	147724233	147727923	0	2	1509,724,	0,2966,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	147735274	147738767	T019804_T019804	0	+	147735274	147738767	0	2	1359,1784,	0,1709,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr1	147735274	147768478	T019809_T019809	0	+	147735274	147768478	0	5	1359,559,600,1622,4193,	0,1709,15775,24521,29011,
#Boundary problem: need 7, got 5, diff 2, mapped 0.7
chr1	147735274	147768478	T019808_T019808	0	+	147735274	147768478	0	7	1359,559,600,226,1306,3118,616,	0,1709,15775,24521,24837,29011,32588,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	147735274	147738767	T019806_T019806	0	+	147735274	147738767	0	2	1342,1784,	0,1709,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	147735274	147763094	T019807_T019807	0	+	147735274	147763094	0	3	1342,559,3299,	0,1709,24521,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr1	147739391	147852482	T019833_T019833	0	-	147739391	147852482	0	16	27,202,184,3643,164,59,227,2705,169,116,161,704,10068,199,109,2283,	0,4572,5638,20373,28465,28839,28988,65947,76949,77380,77941,78246,84957,95928,102071,110808,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr1	147739391	147834921	T019831_T019831	0	-	147739391	147834921	0	14	27,202,184,3643,164,59,227,2705,169,116,161,704,10068,131,	0,4572,5638,20373,28465,28839,28988,65947,76949,77380,77941,78246,84957,95399,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	147739391	147766493	T019817_T019817	0	-	147739391	147766493	0	5	27,202,184,399,6165,	0,4572,5638,20373,20937,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr1	147739391	147835852	T019832_T019832	0	-	147739391	147835852	0	13	27,202,184,3643,164,59,227,2705,169,116,161,704,11504,	0,4572,5638,20373,28465,28839,28988,65947,76949,77380,77941,78246,84957,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr1	147743978	147841569	T019836_T019836	0	-	147743978	147841569	0	15	187,184,3643,164,59,227,2705,169,116,161,110,128,10068,728,107,	0,1051,15786,23878,24252,24401,61360,72362,72793,73354,73659,74235,80370,90812,97484,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	147751049	147768478	T019840_T019840	0	+	147751049	147768478	0	3	613,1622,4193,	0,8746,13236,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	147759009	147807029	T019853_T019853	0	-	147759009	147807029	0	5	4401,141,59,227,313,	0,8847,9221,9370,47707,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	147759009	147769377	T019841_T019841	0	-	147759009	147769377	0	5	4398,164,59,227,142,	0,8847,9221,9370,10226,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	147759009	147769378	T019849_T019849	0	-	147759009	147769378	0	6	4398,164,59,227,85,143,	0,8847,9221,9370,9911,10226,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	147759009	147769377	T019845_T019845	0	-	147759009	147769377	0	7	1154,2581,164,59,227,17,142,	0,1820,8847,9221,9370,9979,10226,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	147759009	147777257	T019852_T019852	0	-	147759009	147777257	0	5	4398,164,59,227,41,	0,8847,9221,9370,18207,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	147759009	147819750	T019855_T019855	0	-	147759009	147819750	0	8	4401,164,59,227,2705,169,116,2418,	0,8847,9221,9370,46329,57331,57762,58323,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	147759009	147769377	T019843_T019843	0	-	147759009	147769377	0	7	1154,2581,164,59,227,85,142,	0,1820,8847,9221,9370,9911,10226,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	147759009	147776663	T019850_T019850	0	-	147759009	147776663	0	6	1154,4325,164,59,227,13,	0,1820,8847,9221,9370,17641,
#Boundary problem: need 12, got 9, diff 3, mapped 0.8
chr1	147759009	147932073	T019859_T019859	0	-	147759009	147932073	0	12	4401,164,59,227,59,116,161,704,11170,109,319,350,	0,8847,9221,9370,57441,57762,58323,58628,65339,82453,92370,172714,
#Boundary problem: need 13, got 11, diff 2, mapped 0.8
chr1	147759009	147852482	T019858_T019858	0	-	147759009	147852482	0	13	4401,164,59,227,2705,169,116,161,704,1165,9910,109,1103,	0,8847,9221,9370,46329,57331,57762,58323,58628,65339,66599,82453,92370,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	147759009	147769377	T019847_T019847	0	-	147759009	147769377	0	7	1154,2578,164,59,227,85,142,	0,1820,8847,9221,9370,9911,10226,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	147759009	147840001	T019857_T019857	0	-	147759009	147840001	0	8	4401,164,59,227,1186,169,199,237,	0,8847,9221,9370,47848,57331,76310,80755,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	147759009	147769378	T019848_T019848	0	-	147759009	147769378	0	5	4401,164,59,227,143,	0,8847,9221,9370,10226,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	147759009	147769377	T019846_T019846	0	-	147759009	147769377	0	5	4398,164,59,227,103,	0,8847,9221,9370,10265,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	147759009	147819750	T019854_T019854	0	-	147759009	147819750	0	7	4401,164,59,227,2041,59,2418,	0,8847,9221,9370,46993,57441,58323,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	147759009	147769377	T019844_T019844	0	-	147759009	147769377	0	5	4398,141,59,227,142,	0,8847,9221,9370,10226,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	147759009	147769377	T019842_T019842	0	-	147759009	147769377	0	6	4401,164,59,227,85,142,	0,8847,9221,9370,9911,10226,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr1	147759009	147777257	T019851_T019851	0	-	147759009	147777257	0	5	1154,7692,59,227,41,	0,1319,9221,9370,18207,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	147759009	147826672	T019856_T019856	0	-	147759009	147826672	0	8	4398,164,59,227,169,110,1165,1064,	0,8847,9221,9370,57331,58628,65339,66599,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	147759067	147768478	T019860_T019860	0	+	147759067	147768478	0	4	338,226,1306,4193,	0,728,1044,5218,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	147805608	147932073	T019874_T019874	0	-	147805608	147932073	0	3	2435,169,350,	0,10732,126115,
#Boundary problem: need 8, got 6, diff 2, mapped 0.8
chr1	147805608	147932073	T019873_T019873	0	-	147805608	147932073	0	8	2435,169,161,704,11170,109,319,350,	0,10732,11724,12029,18740,35854,45771,126115,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	147805608	147852482	T019871_T019871	0	-	147805608	147852482	0	6	2435,169,704,13484,109,1103,	0,10732,12029,16426,35854,45771,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	147805608	147835574	T019868_T019868	0	-	147805608	147835574	0	5	2435,169,110,10068,255,	0,10732,12029,18740,29711,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	147806002	147807670	T019877_T019877	0	+	147806002	147807670	0	3	73,76,662,	0,805,1006,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	147813134	147834737	T019881_T019881	0	+	147813134	147834737	0	2	13237,8200,	0,13403,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	147825896	147834737	T019882_T019882	0	+	147825896	147834737	0	3	475,216,7582,	0,641,1259,
#Partially deleted in new
chr1	147927635	147932057	T019892_T019892	0	-	147927635	147932057	0	3	45,55,334,	0,3126,4088,
#Partially deleted in new
chr1	147931284	147931521	T019893_T019893	0	-	147931284	147931521	0	1	237,	0,
#Partially deleted in new
chr1	148176040	148179919	T019911_T019911	0	-	148176040	148179919	0	3	39,1308,152,	0,122,3727,
#Partially deleted in new
chr1	148240764	148244892	T019912_T019912	0	+	148240764	148244892	0	2	553,3495,	0,633,
#Partially deleted in new
chr1	148240846	148244892	T019913_T019913	0	+	148240846	148244892	0	2	483,3457,	0,589,
#Partially deleted in new
chr1	148241036	148242099	T019914_T019914	0	-	148241036	148242099	0	2	21,627,	0,436,
#Partially deleted in new
chr1	148241289	148242099	T019915_T019915	0	-	148241289	148242099	0	2	28,627,	0,183,
#Partially deleted in new
chr1	148241478	148244892	T019916_T019916	0	+	148241478	148244892	0	2	175,2869,	0,545,
#Partially deleted in new
chr1	148245086	148249419	T019918_T019918	0	-	148245086	148249419	0	2	2133,1435,	0,2898,
#Partially deleted in new
chr1	148329029	148349276	T019922_T019922	0	-	148329029	148349276	0	13	52,164,52,206,73,215,103,210,212,73,215,210,2388,	0,1094,5165,6505,7175,8288,9337,11208,12765,13440,14564,17552,17859,
#Partially deleted in new
chr1	148329029	148349293	T019923_T019923	0	-	148329029	148349293	0	14	52,164,52,206,73,215,103,210,212,73,215,103,210,2405,	0,1094,5165,6505,7175,8288,9337,11208,12765,13440,14564,15610,17552,17859,
#Partially deleted in new
chr1	148336244	148349276	T019924_T019924	0	-	148336244	148349276	0	6	33,215,103,139,71,2388,	0,1073,2122,3993,10476,10644,
#Partially deleted in new
chr1	148337075	148349293	T019925_T019925	0	-	148337075	148349293	0	9	457,103,210,212,73,215,103,210,2405,	0,1291,3162,4719,5394,6518,7564,9506,9813,
#Partially deleted in new
chr1	148338366	148359644	T019927_T019927	0	-	148338366	148359644	0	10	103,210,212,73,215,103,210,160,689,5205,	0,1871,3428,4103,5227,6273,8215,8522,15312,16073,
#Partially deleted in new
chr1	148338366	148359644	T019926_T019926	0	-	148338366	148359644	0	8	103,210,212,73,215,103,467,5205,	0,1871,3428,4103,5227,6273,8215,16073,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	148340376	148354829	T019928_T019928	0	-	148340376	148354829	0	6	71,212,73,215,753,604,	0,1418,2093,3217,6205,13849,
#Partially deleted in new
chr1	148341299	148349293	T019929_T019929	0	-	148341299	148349293	0	6	707,73,215,103,210,2405,	0,1170,2294,3340,5282,5589,
#Partially deleted in new
chr1	148349565	148359643	T019932_T019932	0	-	148349565	148359643	0	5	2228,95,59,1106,5965,	0,2535,2736,2849,4113,
#Partially deleted in new
chr1	148352100	148359643	T019933_T019933	0	-	148352100	148359643	0	5	260,1106,689,1887,613,	0,314,1578,2339,6930,
#Partially deleted in new
chr1	148360470	148361360	T019934_T019934	0	-	148360470	148361360	0	2	552,280,	0,610,
#Partially deleted in new
chr1	148360470	148361360	T019935_T019935	0	-	148360470	148361360	0	2	552,313,	0,577,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	148597804	148599879	T019988_T019988	0	+	148597804	148599879	0	2	713,593,	0,1482,
#Partially deleted in new
chr1	148677449	148684141	T019992_T019992	0	-	148677449	148684141	0	3	945,2326,493,	0,2244,6199,
#Partially deleted in new
chr1	148677449	148684141	T019993_T019993	0	-	148677449	148684141	0	4	438,88,2326,493,	0,854,2244,6199,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr1	148677449	148855479	T019994_T019994	0	-	148677449	148855479	0	6	438,88,2326,94,167,1788,	0,854,2244,167910,175958,176242,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr1	148677449	148684086	T019990_T019990	0	-	148677449	148684086	0	3	438,3716,438,	0,854,6199,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	148677449	148855479	T019996_T019996	0	-	148677449	148855479	0	3	438,3716,10120,	0,854,167910,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	148677449	148684141	T019991_T019991	0	-	148677449	148684141	0	2	4570,493,	0,6199,
#Partially deleted in new
chr1	148760085	148761856	T019999_T019999	0	+	148760085	148761856	0	2	474,531,	0,1240,
#Partially deleted in new
chr1	148822704	148859506	T020000_T020000	0	+	148822704	148859506	0	6	554,68,133,77,186,745,	0,24708,29697,30651,30824,36057,
#Partially deleted in new
chr1	148822830	148853848	T020001_T020001	0	+	148822830	148853848	0	4	428,68,133,320,	0,24582,29571,30698,
#Partially deleted in new
chr1	148839301	148855479	T020012_T020012	0	-	148839301	148855479	0	4	776,77,317,1590,	0,2075,4096,14588,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	148839301	148855479	T020011_T020011	0	-	148839301	148855479	0	5	773,2338,94,167,1590,	0,2075,6058,14106,14588,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr1	148839301	148855479	T020017_T020017	0	-	148839301	148855479	0	4	776,2338,183,1788,	0,2075,14106,14390,
#Partially deleted in new
chr1	148839301	148855479	T020004_T020004	0	-	148839301	148855479	0	5	776,77,317,167,1590,	0,2075,4096,14106,14588,
#Partially deleted in new
chr1	148839301	148855479	T020008_T020008	0	-	148839301	148855479	0	5	773,77,317,94,1590,	0,2075,4096,6058,14588,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	148839301	148855479	T020015_T020015	0	-	148839301	148855479	0	3	773,2338,10120,	0,2075,6058,
#Partially deleted in new
chr1	148839301	148855479	T020009_T020009	0	-	148839301	148855479	0	5	776,77,317,94,1590,	0,2075,4096,6058,14588,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	148839301	148855479	T020024_T020024	0	-	148839301	148855479	0	4	773,2338,167,1590,	0,2075,14106,14588,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	148839301	148855479	T020010_T020010	0	-	148839301	148855479	0	4	776,2338,8215,1590,	0,2075,6058,14588,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	148839301	148855479	T020023_T020023	0	-	148839301	148855479	0	3	773,2338,1590,	0,2075,14588,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	148839301	148855479	T020013_T020013	0	-	148839301	148855479	0	5	776,2338,94,183,1590,	0,2075,6058,14106,14588,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	148839301	148855479	T020018_T020018	0	-	148839301	148855479	0	3	1047,2338,1590,	0,2075,14588,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	148839301	148855479	T020019_T020019	0	-	148839301	148855479	0	3	776,2338,1590,	0,2075,14588,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	148839301	148855479	T020006_T020006	0	-	148839301	148855479	0	5	776,77,788,183,1590,	0,2075,3625,14106,14588,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	148839301	148855479	T020005_T020005	0	-	148839301	148855479	0	4	776,2338,167,1590,	0,2075,14106,14588,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	148839301	148855479	T020003_T020003	0	-	148839301	148855479	0	3	773,788,10120,	0,3625,6058,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	148844230	148853848	T020026_T020026	0	+	148844230	148853848	0	3	8304,77,320,	0,9125,9298,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	148864832	148870074	T020033_T020033	0	+	148864832	148870074	0	2	61,4541,	0,701,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	148864966	148870074	T020034_T020034	0	+	148864966	148870074	0	2	63,4541,	0,567,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	148873391	148891928	T020036_T020036	0	+	148873391	148891928	0	2	8658,9687,	0,8850,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr1	148887506	148954462	T020038_T020038	0	+	148887506	148954462	0	11	300,168,112,213,357,5024,11172,135,78,1233,1222,	0,555,2072,4022,13979,14516,29707,45279,45784,63738,65734,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	148889399	148954462	T020039_T020039	0	+	148889399	148954462	0	8	291,213,357,5024,11172,135,1233,1443,	0,2129,12086,12623,27814,43386,61845,63620,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	148899688	148954462	T020040_T020040	0	+	148899688	148954462	0	7	2154,5024,11172,135,78,1233,1443,	0,2334,17525,33097,33602,51556,53331,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	148900467	148954462	T020041_T020041	0	+	148900467	148954462	0	6	195,5024,11172,135,1233,1279,	0,1555,16746,32318,50777,52716,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	148901236	148954462	T020042_T020042	0	+	148901236	148954462	0	6	606,5024,11172,135,1233,1443,	0,786,15977,31549,50008,51783,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	148928112	148954462	T020046_T020046	0	+	148928112	148954462	0	4	273,135,1233,1222,	0,4673,23132,25128,
#Partially deleted in new
chr1	149025899	149041990	T020049_T020049	0	-	149025899	149041990	0	3	1098,71,226,	0,10511,15865,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149182042	149188412	T020083_T020083	0	+	149182042	149188412	0	4	485,157,1457,1589,	0,1963,3158,4781,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149223111	149225737	T020098_T020098	0	+	149223111	149225737	0	3	30,1445,746,	0,328,1880,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	149228941	149257453	T020104_T020104	0	+	149228941	149257453	0	9	75,56,2939,210,236,126,1279,108,2268,	0,1776,2598,10926,16108,21577,21900,25355,26244,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr1	149228941	149253103	T020101_T020101	0	+	149228941	149253103	0	6	75,56,5370,3068,236,2585,	0,1776,2598,8068,16108,21577,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	149228941	149253103	T020102_T020102	0	+	149228941	149253103	0	8	75,56,2939,210,236,126,51,1303,	0,1776,2598,10926,16108,21577,22139,22859,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	149228941	149257453	T020103_T020103	0	+	149228941	149257453	0	8	75,56,2939,210,236,126,1279,3157,	0,1776,2598,10926,16108,21577,21900,25355,
#Boundary problem: need 9, got 7, diff 2, mapped 0.8
chr1	149228941	149265493	T020106_T020106	0	+	149228941	149265493	0	9	75,56,5370,3068,236,1602,108,122,4178,	0,1776,2598,8068,16108,21577,25355,26244,32374,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr1	149228941	149257453	T020105_T020105	0	+	149228941	149257453	0	8	75,56,2939,210,236,126,51,2268,	0,1776,2598,10926,16108,21577,22139,26244,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	149266572	149279100	T020119_T020119	0	-	149266572	149279100	0	2	3298,9159,	0,3369,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	149279219	149303911	T020123_T020123	0	+	149279219	149303911	0	2	9677,12708,	0,11984,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149279219	149303911	T020124_T020124	0	+	149279219	149303911	0	3	5679,2142,12708,	0,7535,11984,
#Boundary problem: need 5, got 2, diff 3, mapped 0.4
chr1	149279219	149303911	T020122_T020122	0	+	149279219	149303911	0	5	7095,2142,1385,7465,2578,	0,7535,11984,14067,22114,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149279266	149303911	T020126_T020126	0	+	149279266	149303911	0	4	5632,89,2142,12708,	0,6959,7488,11937,
#Boundary problem: need 5, got 2, diff 3, mapped 0.4
chr1	149280335	149303911	T020129_T020129	0	+	149280335	149303911	0	5	5979,2573,1385,7465,2578,	0,6419,10868,12951,20998,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149283726	149303911	T020132_T020132	0	+	149283726	149303911	0	4	1172,139,2142,12708,	0,2449,3028,7477,
#Boundary problem: need 6, got 3, diff 3, mapped 0.5
chr1	149283726	149303911	T020131_T020131	0	+	149283726	149303911	0	6	1172,89,2142,1385,7465,2578,	0,2499,3028,7477,9560,17607,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149304254	149318214	T020144_T020144	0	-	149304254	149318214	0	3	1870,5655,2830,	0,3168,11130,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	149319687	149378361	T020154_T020154	0	+	149319687	149378361	0	6	264,40,201,255,284,506,	0,2365,50969,55310,56986,58168,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	149364679	149378361	T020160_T020160	0	+	149364679	149378361	0	5	4695,21,226,1960,506,	0,5090,5952,10318,13176,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	149364679	149378361	T020161_T020161	0	+	149364679	149378361	0	6	4695,21,255,255,284,506,	0,5090,5923,10318,11994,13176,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	149364679	149378361	T020162_T020162	0	+	149364679	149378361	0	5	4695,21,255,255,506,	0,5090,5923,10318,13176,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	149364679	149378361	T020163_T020163	0	+	149364679	149378361	0	5	4695,21,255,1960,506,	0,5090,5923,10318,13176,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr1	149365769	149378361	T020164_T020164	0	+	149365769	149378361	0	6	3605,21,226,255,284,506,	0,4000,4862,9228,10904,12086,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	149366579	149378361	T020168_T020168	0	+	149366579	149378361	0	5	2795,1088,255,284,506,	0,3190,8418,10094,11276,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	149366579	149378361	T020167_T020167	0	+	149366579	149378361	0	5	2795,21,226,255,506,	0,3190,4052,8418,11276,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149366579	149371197	T020165_T020165	0	+	149366579	149371197	0	3	2795,21,595,	0,3190,4023,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149366579	149371197	T020166_T020166	0	+	149366579	149371197	0	3	2795,21,566,	0,3190,4052,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	149374701	149378361	T020172_T020172	0	+	149374701	149378361	0	2	2256,506,	0,3154,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149374701	149378361	T020173_T020173	0	+	149374701	149378361	0	3	551,284,506,	0,1972,3154,
#Partially deleted in new
chr1	149510800	149514530	T020186_T020186	0	-	149510800	149514530	0	1	3730,	0,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	149576502	149577300	T020193_T020193	0	-	149576502	149577300	0	2	269,384,	0,414,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	149576502	149577296	T020192_T020192	0	-	149576502	149577296	0	2	325,380,	0,414,
#Partially deleted in new
chr1	149645050	149648834	T020212_T020212	0	-	149645050	149648834	0	2	1868,75,	0,3709,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149653234	149720572	T020214_T020214	0	-	149653234	149720572	0	4	5958,188,236,2123,	0,45184,47681,65215,
#Partially deleted in new
chr1	149669168	149670245	T020216_T020216	0	-	149669168	149670245	0	1	1077,	0,
#Partially deleted in new
chr1	149670315	149674104	T020218_T020218	0	-	149670315	149674104	0	2	2097,43,	0,3746,
#Partially deleted in new
chr1	149670315	149673036	T020217_T020217	0	-	149670315	149673036	0	1	2721,	0,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	149686393	149720635	T020223_T020223	0	+	149686393	149720635	0	5	4733,188,188,63,2260,	0,9089,18900,21189,31982,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr1	149690255	149720341	T020235_T020235	0	-	149690255	149720341	0	5	1391,188,52,236,1121,	0,8163,9512,10660,28965,
#Boundary problem: need 6, got 3, diff 3, mapped 0.5
chr1	149690255	149720399	T020238_T020238	0	-	149690255	149720399	0	6	1391,2908,188,52,236,1179,	0,1470,8163,9512,10660,28965,
#Partially deleted in new
chr1	149690255	149719685	T020230_T020230	0	-	149690255	149719685	0	6	8352,52,125,236,538,442,	0,9512,9666,10660,28194,28988,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr1	149690255	149720629	T020245_T020245	0	-	149690255	149720629	0	5	1391,188,52,236,2180,	0,8163,9512,10660,28194,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149690255	149720572	T020241_T020241	0	-	149690255	149720572	0	4	1391,52,236,2123,	0,9512,10660,28194,
#Partially deleted in new
chr1	149690255	149720341	T020231_T020231	0	-	149690255	149720341	0	3	8351,236,1121,	0,10660,28965,
#Partially deleted in new
chr1	149690255	149712246	T020227_T020227	0	-	149690255	149712246	0	3	9564,236,175,	0,10660,21816,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149690255	149694633	T020224_T020224	0	-	149690255	149694633	0	3	1422,131,223,	0,1435,4155,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149690255	149720629	T020246_T020246	0	-	149690255	149720629	0	4	4378,52,236,2180,	0,9512,10660,28194,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149690255	149720629	T020249_T020249	0	-	149690255	149720629	0	3	1391,236,2180,	0,10660,28194,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149690255	149712268	T020229_T020229	0	-	149690255	149712268	0	3	1391,236,193,	0,10660,21820,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr1	149690255	149720341	T020233_T020233	0	-	149690255	149720341	0	5	1391,1687,188,236,1121,	0,2691,8163,10660,28965,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr1	149690255	149700335	T020225_T020225	0	-	149690255	149700335	0	3	2826,1401,414,	0,8163,9666,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149690255	149722919	T020250_T020250	0	-	149690255	149722919	0	4	1391,236,1302,129,	0,10660,28194,32535,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr1	149690255	149720629	T020248_T020248	0	-	149690255	149720629	0	4	4378,188,236,1409,	0,8163,10660,28965,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149690255	149720629	T020243_T020243	0	-	149690255	149720629	0	3	1391,236,1409,	0,10660,28965,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr1	149690255	149720341	T020236_T020236	0	-	149690255	149720341	0	4	2826,188,236,1121,	0,8163,10660,28965,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149690255	149720341	T020232_T020232	0	-	149690255	149720341	0	3	4378,236,1121,	0,10660,28965,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr1	149690255	149720629	T020247_T020247	0	-	149690255	149720629	0	5	4378,188,52,236,2180,	0,8163,9512,10660,28194,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr1	149690255	149712246	T020226_T020226	0	-	149690255	149712246	0	3	1391,236,175,	0,10660,21816,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149690255	149720341	T020237_T020237	0	-	149690255	149720341	0	4	1391,52,236,1121,	0,9512,10660,28965,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr1	149690255	149720572	T020240_T020240	0	-	149690255	149720572	0	4	2826,1401,236,2123,	0,8163,10660,28194,
#Partially deleted in new
chr1	149690255	149720572	T020239_T020239	0	-	149690255	149720572	0	3	8351,236,2123,	0,10660,28194,
#Boundary problem: need 5, got 2, diff 3, mapped 0.4
chr1	149690255	149720341	T020234_T020234	0	-	149690255	149720341	0	5	1422,1391,1401,236,1121,	0,1435,8163,10660,28965,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr1	149690255	149720629	T020244_T020244	0	-	149690255	149720629	0	4	4378,188,236,2180,	0,8163,10660,28194,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr1	149690255	149712267	T020228_T020228	0	-	149690255	149712267	0	6	1391,1687,188,52,236,196,	0,2691,8163,9512,10660,21816,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr1	149690255	149720572	T020242_T020242	0	-	149690255	149720572	0	4	1391,188,236,2123,	0,8163,10660,28194,
#Partially deleted in new
chr1	149695101	149711717	T020251_T020251	0	+	149695101	149711717	0	4	569,188,63,26,	0,10192,12481,16590,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149695101	149720635	T020252_T020252	0	+	149695101	149720635	0	4	569,188,63,2260,	0,10192,12481,23274,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	149749613	149783350	T020259_T020259	0	+	149749613	149783350	0	9	4717,21,255,252,285,394,48,3181,1047,	0,5112,5945,10308,11996,13179,19415,21719,32690,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	149749613	149783350	T020260_T020260	0	+	149749613	149783350	0	9	4717,21,255,252,285,394,48,5315,1047,	0,5112,5945,10308,11996,13179,19415,19585,32690,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	149753081	149822544	T020265_T020265	0	-	149753081	149822544	0	5	1735,517,5563,13997,580,	0,6096,10432,18225,68883,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr1	149753081	149804265	T020263_T020263	0	-	149753081	149804265	0	6	1735,517,5563,5372,25884,1521,	0,6096,10432,18225,23734,49663,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr1	149753081	149814675	T020264_T020264	0	-	149753081	149814675	0	5	1735,517,13165,8488,788,	0,6096,10432,23734,60806,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	149753081	149822565	T020266_T020266	0	-	149753081	149822565	0	5	1735,517,5563,12341,7720,	0,6096,10432,18225,61764,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	149753081	149804164	T020262_T020262	0	-	149753081	149804164	0	5	1735,517,5563,13997,825,	0,6096,10432,18225,50258,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr1	149753081	149822565	T020267_T020267	0	-	149753081	149822565	0	6	1735,517,5563,5372,8403,7661,	0,6096,10432,18225,23734,61823,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr1	149757275	149804248	T020269_T020269	0	-	149757275	149804248	0	5	2419,1580,7650,8488,909,	0,6238,11753,19540,46064,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149764666	149783350	T020270_T020270	0	+	149764666	149783350	0	4	427,48,5315,1047,	0,4362,4532,17637,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr1	149764958	149783350	T020271_T020271	0	+	149764958	149783350	0	4	135,48,3181,1047,	0,4070,6374,17345,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr1	149764958	149783350	T020272_T020272	0	+	149764958	149783350	0	5	135,48,276,3181,1047,	0,4070,4240,6374,17345,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	149909552	149912249	T020358_T020358	0	+	149909552	149912249	0	2	31,2436,	0,261,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	150230818	150237087	T020417_T020417	0	-	150230818	150237087	0	2	131,4795,	0,1474,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr1	206239508	206277483	T029072_T029072	0	+	206239508	206277483	0	2	20452,13046,	0,24929,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	206516039	206581390	T029117_T029117	0	+	206516039	206581390	0	7	323,63,216,129,222,102,1655,	0,41329,50006,50862,58743,62568,63696,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr1	206516039	206581390	T029116_T029116	0	+	206516039	206581390	0	7	323,63,216,129,225,102,1655,	0,41329,50006,50862,58740,62568,63696,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr1	223797845	223853472	T031343_T031343	0	-	223797845	223853472	0	12	167,5726,2844,161,75,86,84,169,134,119,70,361,	0,276,6179,9149,10048,12671,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr1	223797845	223853476	T031355_T031355	0	-	223797845	223853476	0	11	2223,176,1959,161,75,86,84,169,119,70,365,	0,5826,6179,9149,10048,12671,15661,16845,18518,44186,55266,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr1	223797845	223853420	T031337_T031337	0	-	223797845	223853420	0	9	6002,161,75,86,84,169,119,70,309,	0,9149,10048,12671,15661,16845,18518,44186,55266,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr1	223797845	223853472	T031347_T031347	0	-	223797845	223853472	0	11	6002,2844,161,75,573,84,169,134,119,70,361,	0,6179,9149,10048,12184,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr1	223797845	223895465	T031359_T031359	0	-	223797845	223895465	0	12	2114,176,974,86,84,169,134,119,70,145,57,396,	0,5826,9149,12671,15661,16845,17865,18518,44186,67794,80628,97224,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr1	223797845	223853472	T031350_T031350	0	-	223797845	223853472	0	12	2114,176,2844,161,75,86,84,169,134,119,70,361,	0,5826,6179,9149,10048,12671,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr1	223797845	223853476	T031356_T031356	0	-	223797845	223853476	0	12	2223,176,1959,161,75,86,84,169,134,119,70,365,	0,5826,6179,9149,10048,12671,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr1	223797845	223853472	T031346_T031346	0	-	223797845	223853472	0	12	2114,176,2908,161,75,86,84,169,134,119,70,361,	0,5826,6115,9149,10048,12671,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr1	223797845	223853476	T031354_T031354	0	-	223797845	223853476	0	12	2114,176,1959,161,75,174,84,169,134,119,70,365,	0,5826,6179,9149,10048,12583,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr1	223797845	223853472	T031348_T031348	0	-	223797845	223853472	0	12	2223,176,2844,161,75,86,84,169,134,119,70,361,	0,5826,6179,9149,10048,12671,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr1	223797845	223853471	T031340_T031340	0	-	223797845	223853471	0	10	2114,2312,161,75,86,84,169,119,70,360,	0,5826,9149,10048,12671,15661,16845,18518,44186,55266,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr1	223797845	223853472	T031345_T031345	0	-	223797845	223853472	0	10	6002,161,75,573,84,169,134,119,70,361,	0,9149,10048,12184,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr1	223797845	223853476	T031352_T031352	0	-	223797845	223853476	0	12	2114,176,1959,161,75,86,84,169,134,119,70,365,	0,5826,6179,9149,10048,12671,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr1	223797845	223853472	T031342_T031342	0	-	223797845	223853472	0	11	2114,176,161,75,573,84,169,134,119,70,361,	0,5826,9149,10048,12184,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr1	223797845	223853476	T031353_T031353	0	-	223797845	223853476	0	11	2223,176,161,75,86,84,169,134,119,70,365,	0,5826,9149,10048,12671,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr1	223797845	223853472	T031349_T031349	0	-	223797845	223853472	0	10	6002,161,75,174,84,169,134,119,70,361,	0,9149,10048,12583,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr1	223797845	223853471	T031341_T031341	0	-	223797845	223853471	0	11	2114,176,2908,161,75,86,84,169,119,70,360,	0,5826,6115,9149,10048,12671,15661,16845,18518,44186,55266,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr1	223797845	223853471	T031339_T031339	0	-	223797845	223853471	0	11	2114,176,2844,161,75,86,84,169,119,70,360,	0,5826,6179,9149,10048,12671,15661,16845,18518,44186,55266,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr1	223797845	223853476	T031357_T031357	0	-	223797845	223853476	0	12	167,5726,1959,161,75,86,84,169,134,119,70,365,	0,276,6179,9149,10048,12671,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr1	223797845	223853476	T031351_T031351	0	-	223797845	223853476	0	11	2114,176,161,75,86,84,169,134,119,70,365,	0,5826,9149,10048,12671,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr1	223797845	223853476	T031358_T031358	0	-	223797845	223853476	0	13	5392,226,68,191,161,75,86,84,169,134,119,70,365,	0,5491,5730,5811,9149,10048,12671,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr1	223797845	223853472	T031344_T031344	0	-	223797845	223853472	0	11	2114,2312,161,75,573,84,169,134,119,70,361,	0,5826,9149,10048,12184,15661,16845,17865,18518,44186,55266,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr1	223797845	223853466	T031338_T031338	0	-	223797845	223853466	0	10	2223,3197,161,75,86,84,169,119,70,355,	0,5826,9149,10048,12671,15661,16845,18518,44186,55266,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr1	235186498	235192213	T033422_T033422	0	-	235186498	235192213	0	1	5715,	0,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	42384909	42662328	T040410_T040410	0	+	42384909	42662328	0	2	575,19,	0,277400,
#Partially deleted in new
chr10	42390272	42597394	T040418_T040418	0	-	42390272	42597394	0	2	1079,520,	0,206602,
#Partially deleted in new
chr10	46691228	46698509	T041121_T041121	0	+	46691228	46698509	0	2	3128,121,	0,7160,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	46691806	46698509	T041122_T041122	0	+	46691806	46698509	0	2	2603,121,	0,6582,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr10	47088702	47153509	T041271_T041271	0	-	47088702	47153509	0	7	9947,119,127,18874,990,86,933,	0,10588,10885,32418,62263,63600,63874,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr10	47088702	47151955	T041260_T041260	0	-	47088702	47151955	0	3	11012,1876,990,	0,32418,62263,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	47088702	47152484	T041263_T041263	0	-	47088702	47152484	0	6	9947,119,127,1876,990,182,	0,10588,10885,32418,62263,63600,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr10	47088702	47174132	T041273_T041273	0	-	47088702	47174132	0	5	11012,1876,6521,132,235,	0,32418,44092,62263,85195,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr10	47088702	47174175	T041275_T041275	0	-	47088702	47174175	0	6	9947,119,127,1876,5879,278,	0,10588,10885,32418,45413,85195,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr10	47088702	47153435	T041267_T041267	0	-	47088702	47153435	0	6	4156,6746,1876,7200,292,859,	0,4266,32418,44092,62263,63874,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr10	47088702	47174098	T041272_T041272	0	-	47088702	47174098	0	5	11012,1876,7200,132,201,	0,32418,44092,62263,85195,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr10	47088702	47153509	T041268_T041268	0	-	47088702	47153509	0	5	11012,18622,990,86,933,	0,32418,62263,63600,63874,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr10	47088702	47151955	T041258_T041258	0	-	47088702	47151955	0	5	9947,119,127,139,990,	0,10588,10885,32418,62263,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr10	47088702	47153509	T041270_T041270	0	-	47088702	47153509	0	6	10707,127,18874,990,86,933,	0,10885,32418,62263,63600,63874,
#Boundary problem: need 9, got 7, diff 2, mapped 0.8
chr10	47088702	47153509	T041269_T041269	0	-	47088702	47153509	0	9	4156,4971,507,424,1876,5627,990,86,933,	0,4266,9440,10588,32418,45413,62263,63600,63874,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr10	47088702	47174175	T041274_T041274	0	-	47088702	47174175	0	4	11012,18874,132,278,	0,32418,62263,85195,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr10	47088702	47151116	T041255_T041255	0	-	47088702	47151116	0	5	3115,5843,424,143,151,	0,4104,10588,32418,62263,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr10	47088702	47152576	T041264_T041264	0	-	47088702	47152576	0	5	4156,6441,127,990,274,	0,4266,10885,62263,63600,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr10	47088702	47152576	T041266_T041266	0	-	47088702	47152576	0	5	9947,119,127,990,274,	0,10588,10885,62263,63600,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	47088702	47151848	T041257_T041257	0	-	47088702	47151848	0	4	11012,1876,6521,883,	0,32418,44092,62263,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr10	47088702	47152576	T041265_T041265	0	-	47088702	47152576	0	7	9947,119,127,1876,6798,990,274,	0,10588,10885,32418,44494,62263,63600,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	47088702	47151848	T041256_T041256	0	-	47088702	47151848	0	4	11012,1876,7218,883,	0,32418,44092,62263,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr10	47088702	47174195	T041276_T041276	0	-	47088702	47174195	0	5	11012,1876,6948,132,298,	0,32418,44092,62263,85195,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	47088702	47151955	T041261_T041261	0	-	47088702	47151955	0	4	9947,424,143,990,	0,10588,32418,62263,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr10	47088702	47151955	T041259_T041259	0	-	47088702	47151955	0	4	3115,5843,424,990,	0,4104,10588,62263,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr10	47088702	47151955	T041262_T041262	0	-	47088702	47151955	0	3	11012,143,990,	0,32418,62263,
#Partially deleted in new
chr10	47122176	47174195	T041277_T041277	0	-	47122176	47174195	0	3	820,132,298,	0,28789,51721,
#Partially deleted in new
chr10	47330978	47338868	T041302_T041302	0	+	47330978	47338868	0	2	124,1002,	0,6888,
#Partially deleted in new
chr10	48899330	48900182	T041529_T041529	0	-	48899330	48900182	0	1	852,	0,
#Partially deleted in new
chr10	48942117	48942563	T041545_T041545	0	-	48942117	48942563	0	1	446,	0,
#Partially deleted in new
chr10	48975515	48998795	T041569_T041569	0	-	48975515	48998795	0	5	4793,120,137,123,226,	0,4893,5632,13624,23054,
#Boundary problem: need 8, got 6, diff 2, mapped 0.8
chr10	48975515	48989593	T041566_T041566	0	-	48975515	48989593	0	8	4793,120,137,140,59,133,2693,454,	0,4893,5632,7645,8954,9929,10243,13624,
#Partially deleted in new
chr10	48975515	48982689	T041564_T041564	0	-	48975515	48982689	0	2	4793,2281,	0,4893,
#Boundary problem: need 7, got 5, diff 2, mapped 0.7
chr10	48975515	49033431	T041570_T041570	0	-	48975515	49033431	0	7	4793,120,137,4793,22275,65,1302,	0,4893,5632,8954,23054,45434,56614,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr10	48975515	48982422	T041563_T041563	0	-	48975515	48982422	0	3	4793,120,1275,	0,4893,5632,
#Partially deleted in new
chr10	48975515	48990382	T041567_T041567	0	-	48975515	48990382	0	4	4793,120,137,5913,	0,4893,5632,8954,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr10	48975515	48982841	T041565_T041565	0	-	48975515	48982841	0	4	4793,120,137,630,	0,4893,5632,6696,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr10	48975515	48990382	T041568_T041568	0	-	48975515	48990382	0	6	4793,120,137,140,3982,1126,	0,4893,5632,7645,8954,13741,
#Boundary problem: need 7, got 4, diff 3, mapped 0.6
chr10	48980708	49018423	T041573_T041573	0	-	48980708	49018423	0	7	576,140,59,133,2693,123,115,	0,2452,3761,4736,5050,8431,37600,
#Partially deleted in new
chr10	48980708	48982407	T041571_T041571	0	-	48980708	48982407	0	2	576,196,	0,1503,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr10	48980708	48998795	T041572_T041572	0	-	48980708	48998795	0	6	576,208,830,2693,123,226,	0,3612,4039,5050,8431,17861,
#Boundary problem: need 4, got 1, diff 3, mapped 0.2
chr10	48983916	48998770	T041577_T041577	0	-	48983916	48998770	0	4	1661,2693,154,201,	0,1842,5192,14653,
#Boundary problem: need 4, got 1, diff 3, mapped 0.2
chr10	48983916	48998795	T041578_T041578	0	-	48983916	48998795	0	4	1661,3244,143,226,	0,1842,5203,14653,
#Boundary problem: need 2, got 0, diff 2, mapped 0.0
chr10	48983916	48990382	T041575_T041575	0	-	48983916	48990382	0	2	4535,1126,	0,5340,
#Boundary problem: need 5, got 2, diff 3, mapped 0.4
chr10	48983916	48998767	T041576_T041576	0	-	48983916	48998767	0	5	612,133,2693,181,198,	0,1528,1842,5165,14653,
#Boundary problem: need 5, got 1, diff 4, mapped 0.2
chr10	48983916	49018423	T041583_T041583	0	-	48983916	49018423	0	5	612,830,2693,123,115,	0,831,1842,5223,34392,
#Boundary problem: need 2, got 0, diff 2, mapped 0.0
chr10	48983916	48990382	T041574_T041574	0	-	48983916	48990382	0	2	4535,1274,	0,5192,
#Boundary problem: need 4, got 0, diff 4, mapped 0.0
chr10	48983916	49018421	T041580_T041580	0	-	48983916	49018421	0	4	1661,2693,154,113,	0,1842,5192,34392,
#Boundary problem: need 5, got 2, diff 3, mapped 0.4
chr10	48983916	48998795	T041579_T041579	0	-	48983916	48998795	0	5	612,133,2693,123,226,	0,1528,1842,5223,14653,
#Boundary problem: need 5, got 1, diff 4, mapped 0.2
chr10	48983916	49018421	T041581_T041581	0	-	48983916	49018421	0	5	612,133,2693,154,113,	0,1528,1842,5192,34392,
#Boundary problem: need 5, got 1, diff 4, mapped 0.2
chr10	48983916	49018423	T041582_T041582	0	-	48983916	49018423	0	5	612,133,2693,123,115,	0,1528,1842,5223,34392,
#Partially deleted in new
chr10	49089926	49091599	T041584_T041584	0	-	49089926	49091599	0	1	1673,	0,
#Partially deleted in new
chr10	51623391	51770873	T041888_T041888	0	+	51623391	51770873	0	21	231,184,84,75,87,93,158,80,61,76,148,131,93,1774,69,69,35,101,36,52,2403,	0,9454,19245,25524,32990,56263,61728,72008,76190,79927,84122,109380,117557,123533,125676,128044,130763,138364,141053,144393,145079,
#Partially deleted in new
chr10	51623391	51770873	T041883_T041883	0	+	51623391	51770873	0	23	510,987,184,84,75,87,93,158,80,61,76,148,3174,93,107,188,69,69,35,101,36,52,2403,	0,7578,9454,19245,25524,32990,56263,61728,72008,76190,79927,84122,109380,117557,123533,125119,125676,128044,130763,138364,141053,144393,145079,
#Partially deleted in new
chr10	51623391	51770873	T041886_T041886	0	+	51623391	51770873	0	22	510,987,184,121,86,75,93,158,80,61,76,148,131,93,1774,69,69,35,101,36,52,2403,	0,7578,9454,18995,19243,25524,56263,61728,72008,76190,79927,84122,109380,117557,123533,125676,128044,130763,138364,141053,144393,145079,
#Partially deleted in new
chr10	51623391	51770873	T041881_T041881	0	+	51623391	51770873	0	24	83,67,987,184,121,86,75,87,93,158,80,61,76,148,131,70,188,69,69,35,101,36,52,2403,	0,6594,7578,9454,18995,19243,25524,32990,56263,61728,72008,76190,79927,84122,109380,123533,125119,125676,128044,130763,138364,141053,144393,145079,
#Partially deleted in new
chr10	51623391	51770873	T041884_T041884	0	+	51623391	51770873	0	21	79,987,184,84,75,87,93,158,80,61,76,148,131,1774,69,69,35,101,36,52,2403,	0,7578,9454,19245,25524,32990,56263,61728,72008,76190,79927,84122,109380,123533,125676,128044,130763,138364,141053,144393,145079,
#Partially deleted in new
chr10	51623391	51770873	T041887_T041887	0	+	51623391	51770873	0	22	231,987,184,121,86,75,87,93,158,80,61,76,148,131,70,626,69,35,101,36,52,2403,	0,7578,9454,18995,19243,25524,32990,56263,61728,72008,76190,79927,84122,109380,123533,125119,128044,130763,138364,141053,144393,145079,
#Partially deleted in new
chr10	51623391	51770873	T041885_T041885	0	+	51623391	51770873	0	21	510,987,184,121,86,75,93,158,80,61,76,148,131,1774,69,69,35,101,36,52,2403,	0,7578,9454,18995,19243,25524,56263,61728,72008,76190,79927,84122,109380,123533,125676,128044,130763,138364,141053,144393,145079,
#Partially deleted in new
chr10	51623391	51770873	T041882_T041882	0	+	51623391	51770873	0	25	510,67,987,184,121,86,75,87,93,158,80,61,76,148,3174,93,107,188,69,69,35,101,36,52,2403,	0,6594,7578,9454,18995,19243,25524,32990,56263,61728,72008,76190,79927,84122,109380,117557,123533,125119,125676,128044,130763,138364,141053,144393,145079,
#Partially deleted in new
chr10	51623394	51770873	T041891_T041891	0	+	51623394	51770873	0	24	507,67,987,184,121,86,75,93,158,80,61,76,148,3174,93,107,188,69,69,35,101,36,52,2403,	0,6591,7575,9451,18992,19240,25521,56260,61725,72005,76187,79924,84119,109377,117554,123530,125116,125673,128041,130760,138361,141050,144390,145076,
#Partially deleted in new
chr10	51623394	51770873	T041889_T041889	0	+	51623394	51770873	0	23	507,67,987,184,121,86,75,87,93,158,80,61,76,148,131,1774,69,69,35,101,36,52,2403,	0,6591,7575,9451,18992,19240,25521,32987,56260,61725,72005,76187,79924,84119,109377,123530,125673,128041,130760,138361,141050,144390,145076,
#Partially deleted in new
chr10	51623394	51770873	T041890_T041890	0	+	51623394	51770873	0	24	507,987,184,121,86,75,87,93,158,80,61,76,148,3174,93,107,188,69,69,35,101,36,52,2403,	0,7575,9451,18992,19240,25521,32987,56260,61725,72005,76187,79924,84119,109377,117554,123530,125116,125673,128041,130760,138361,141050,144390,145076,
#Partially deleted in new
chr10	51623394	51770873	T041892_T041892	0	+	51623394	51770873	0	22	507,987,184,121,86,75,87,93,158,80,61,76,148,131,1774,69,69,35,101,36,52,2403,	0,7575,9451,18992,19240,25521,32987,56260,61725,72005,76187,79924,84119,109377,123530,125673,128041,130760,138361,141050,144390,145076,
#Partially deleted in new
chr10	51623396	51770873	T041893_T041893	0	+	51623396	51770873	0	24	505,67,987,184,121,86,75,87,93,158,80,61,76,148,131,93,1774,381,69,35,101,36,52,2403,	0,6589,7573,9449,18990,19238,25519,32985,56258,61723,72003,76185,79922,84117,109375,117552,123528,125359,128039,130758,138359,141048,144388,145074,
#Partially deleted in new
chr10	51623397	51770873	T041894_T041894	0	+	51623397	51770873	0	22	225,67,987,184,84,75,87,93,158,80,61,76,148,131,1774,69,69,35,101,36,52,2403,	0,6588,7572,9448,19239,25518,32984,56257,61722,72002,76184,79921,84116,109374,123527,125670,128038,130757,138358,141047,144387,145073,
#Partially deleted in new
chr10	51623398	51770873	T041895_T041895	0	+	51623398	51770873	0	23	76,67,987,184,121,86,75,93,158,80,61,76,148,131,70,188,69,69,35,101,36,52,2403,	0,6587,7571,9447,18988,19236,25517,56256,61721,72001,76183,79920,84115,109373,123526,125112,125669,128037,130756,138357,141046,144386,145072,
#Partially deleted in new
chr10	51623398	51770873	T041897_T041897	0	+	51623398	51770873	0	21	224,184,84,75,93,158,80,61,76,148,3174,93,107,188,69,69,35,101,36,52,2403,	0,9447,19238,25517,56256,61721,72001,76183,79920,84115,109373,117550,123526,125112,125669,128037,130756,138357,141046,144386,145072,
#Partially deleted in new
chr10	51623398	51770873	T041896_T041896	0	+	51623398	51770873	0	24	503,67,987,184,121,86,75,87,93,158,80,61,76,148,131,93,1774,69,69,35,101,36,52,2403,	0,6587,7571,9447,18988,19236,25517,32983,56256,61721,72001,76183,79920,84115,109373,117550,123526,125669,128037,130756,138357,141046,144386,145072,
#Partially deleted in new
chr10	51623398	51770873	T041898_T041898	0	+	51623398	51770873	0	24	76,67,987,184,121,86,75,93,158,80,61,76,148,3174,93,107,188,69,69,35,101,36,52,2403,	0,6587,7571,9447,18988,19236,25517,56256,61721,72001,76183,79920,84115,109373,117550,123526,125112,125669,128037,130756,138357,141046,144386,145072,
#Partially deleted in new
chr10	51623399	51770873	T041899_T041899	0	+	51623399	51770873	0	22	223,184,84,75,87,93,158,80,61,76,148,3174,93,107,188,69,69,35,101,36,52,2403,	0,9446,19237,25516,32982,56255,61720,72000,76182,79919,84114,109372,117549,123525,125111,125668,128036,130755,138356,141045,144385,145071,
#Partially deleted in new
chr10	51623402	51770873	T041901_T041901	0	+	51623402	51770873	0	22	499,67,987,184,121,86,75,93,158,80,61,76,148,131,1774,69,69,35,101,36,52,2403,	0,6583,7567,9443,18984,19232,25513,56252,61717,71997,76179,79916,84111,109369,123522,125665,128033,130752,138353,141042,144382,145068,
#Partially deleted in new
chr10	51623402	51770873	T041900_T041900	0	+	51623402	51770873	0	19	220,184,84,75,93,158,80,61,76,148,131,1774,69,69,35,101,36,52,2403,	0,9443,19234,25513,56252,61717,71997,76179,79916,84111,109369,123522,125665,128033,130752,138353,141042,144382,145068,
#Partially deleted in new
chr10	51623406	51770873	T041902_T041902	0	+	51623406	51770873	0	21	495,987,184,84,75,87,93,158,80,61,76,148,131,1774,69,69,35,101,36,52,2403,	0,7563,9439,19230,25509,32975,56248,61713,71993,76175,79912,84107,109365,123518,125661,128029,130748,138349,141038,144378,145064,
#Partially deleted in new
chr10	51623622	51770873	T041903_T041903	0	+	51623622	51770873	0	21	279,67,987,184,84,75,93,158,80,61,76,148,131,1774,69,69,35,101,36,52,2403,	0,6363,7347,9223,19014,25293,56032,61497,71777,75959,79696,83891,109149,123302,125445,127813,130532,138133,140822,144162,144848,
#Partially deleted in new
chr10	51623622	51770873	T041906_T041906	0	+	51623622	51770873	0	23	279,987,184,121,86,75,93,158,80,61,76,148,3174,93,107,188,69,69,35,101,36,52,2403,	0,7347,9223,18764,19012,25293,56032,61497,71777,75959,79696,83891,109149,117326,123302,124888,125445,127813,130532,138133,140822,144162,144848,
#Partially deleted in new
chr10	51623622	51770873	T041904_T041904	0	+	51623622	51770873	0	20	279,67,987,184,84,75,93,158,145,61,76,148,131,2212,69,35,101,36,52,2403,	0,6363,7347,9223,19014,25293,56032,61497,71777,75959,79696,83891,109149,123302,127813,130532,138133,140822,144162,144848,
#Partially deleted in new
chr10	51623622	51770873	T041905_T041905	0	+	51623622	51770873	0	24	279,67,987,184,84,75,87,93,158,80,61,76,148,3174,93,107,188,69,69,35,101,36,52,2403,	0,6363,7347,9223,19014,25293,32759,56032,61497,71777,75959,79696,83891,109149,117326,123302,124888,125445,127813,130532,138133,140822,144162,144848,
#Partially deleted in new
chr10	51679654	51770873	T041907_T041907	0	+	51679654	51770873	0	17	93,158,80,61,76,148,131,93,107,188,69,69,35,101,36,52,2403,	0,5465,15745,19927,23664,27859,53117,61294,67270,68856,69413,71781,74500,82101,84790,88130,88816,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr10	133727525	133733742	T051181_T051181	0	-	133727525	133733742	0	3	4496,1084,297,	0,4564,5920,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	133727525	133732308	T051179_T051179	0	-	133727525	133732308	0	2	3472,219,	0,4564,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	133727525	133734319	T051183_T051183	0	-	133727525	133734319	0	2	5236,1146,	0,5648,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	133727525	133733784	T051182_T051182	0	-	133727525	133733784	0	2	4322,133,	0,6126,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	133727525	133732308	T051178_T051178	0	-	133727525	133732308	0	2	2862,219,	0,4564,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	133727525	133732013	T051177_T051177	0	-	133727525	133732013	0	2	3508,26,	0,4462,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr10	133727525	133733409	T051180_T051180	0	-	133727525	133733409	0	2	3370,32,	0,5852,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr10	133727525	133736111	T051184_T051184	0	+	133727525	133736111	0	1	8586,	0,
#Boundary problem: need 30, got 29, diff 1, mapped 1.0
chr11	7685561	7927883	T054263_T054263	0	-	7685561	7927883	0	30	1216,100,86,84,130,107,73,144,268,1517,85,168,90,727,131,104,37,125,3777,152,96,173,92,110,77,165,61,118,74,734,	0,2120,3397,4147,4874,5294,8120,8417,9895,12817,14518,21795,25593,26938,30727,31239,31659,32450,32694,37309,37701,38142,39683,40550,214992,215580,217074,217941,218845,241588,
#Boundary problem: need 31, got 30, diff 1, mapped 1.0
chr11	7685561	7927883	T054262_T054262	0	-	7685561	7927883	0	31	1216,100,86,84,130,107,73,144,268,1517,85,168,90,132,94,616,37,125,2065,190,152,96,173,92,110,77,165,94,118,74,734,	0,2120,3397,4147,4874,5294,8120,8417,9895,12817,14518,21795,25593,26938,27571,30727,31659,32450,32694,36281,37309,37701,38142,39683,40550,214992,215580,217074,217941,218845,241588,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr11	13802535	14290233	T055115_T055115	0	+	13802535	14290233	0	20	420,149,113,169,1027,107,134,74,122,149,65,202,141,76,183,171,168,165,264,3164,	0,170224,170976,176731,181127,201858,260532,294356,298910,354430,462342,473538,474657,475627,476726,478290,478544,479598,481722,484534,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr11	13862208	14290233	T055119_T055119	0	+	13862208	14290233	0	18	190,169,954,107,134,74,122,149,65,202,141,76,183,171,168,165,264,3164,	0,117058,121527,142185,200859,234683,239237,294757,402669,413865,414984,415954,417053,418617,418871,419925,422049,424861,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr11	13943264	14290233	T055137_T055137	0	+	13943264	14290233	0	20	86,149,169,3248,1027,107,134,74,122,149,65,202,141,76,183,171,168,165,264,3164,	0,29495,36002,36934,40398,61129,119803,153627,158181,213701,321613,332809,333928,334898,335997,337561,337815,338869,340993,343805,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr11	13972768	14290233	T055139_T055139	0	+	13972768	14290233	0	20	140,113,169,3248,1027,107,134,74,122,149,65,202,141,76,183,171,168,165,264,3164,	0,743,6498,7430,10894,31625,90299,124123,128677,184197,292109,303305,304424,305394,306493,308057,308311,309365,311489,314301,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr11	13972836	14290233	T055140_T055140	0	+	13972836	14290233	0	19	72,119,169,954,107,134,74,122,149,65,202,141,76,183,171,168,165,264,3164,	0,669,6430,10899,31557,90231,124055,128609,184129,292041,303237,304356,305326,306425,307989,308243,309297,311421,314233,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr11	13976133	14290233	T055141_T055141	0	+	13976133	14290233	0	18	326,169,954,107,134,74,122,149,65,202,141,76,183,171,168,165,264,3164,	0,3133,7602,28260,86934,120758,125312,180832,288744,299940,301059,302029,303128,304692,304946,306000,308124,310936,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr11	13977740	14290233	T055142_T055142	0	+	13977740	14290233	0	18	395,169,1027,107,134,74,122,149,65,202,141,76,183,171,168,165,264,3164,	0,1526,5922,26653,85327,119151,123705,179225,287137,298333,299452,300422,301521,303085,303339,304393,306517,309329,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr11	13980198	14290233	T055143_T055143	0	+	13980198	14290233	0	17	3248,954,107,134,74,122,149,65,202,141,76,183,171,168,165,264,3164,	0,3537,24195,82869,116693,121247,176767,284679,295875,296994,297964,299063,300627,300881,301935,304059,306871,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr11	13982446	14290233	T055144_T055144	0	+	13982446	14290233	0	17	287,1027,107,134,74,122,149,65,202,141,76,183,171,168,165,264,3164,	0,1216,21947,80621,114445,118999,174519,282431,293627,294746,295716,296815,298379,298633,299687,301811,304623,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr11	13982446	14290233	T055145_T055145	0	+	13982446	14290233	0	17	424,1027,107,134,74,122,149,65,202,141,76,183,171,168,165,264,3164,	0,1216,21947,80621,114445,118999,174519,282431,293627,294746,295716,296815,298379,298633,299687,301811,304623,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr11	13983088	14290233	T055146_T055146	0	+	13983088	14290233	0	17	211,1027,107,134,74,122,149,65,202,141,76,183,171,168,165,264,3164,	0,574,21305,79979,113803,118357,173877,281789,292985,294104,295074,296173,297737,297991,299045,301169,303981,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr11	45736814	45746186	T057822_T057822	0	+	45736814	45746186	0	3	7193,253,475,	0,8055,8897,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr11	45743019	45746186	T057824_T057824	0	+	45743019	45746186	0	2	2103,475,	0,2692,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr11	68707990	68717039	T062496_T062496	0	-	68707990	68717039	0	2	1465,6803,	0,2246,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr11	70770786	70803966	T063038_T063038	0	+	70770786	70803966	0	5	2864,9443,7309,4611,6186,	0,3442,14927,22309,26994,
#Boundary problem: need 78, got 77, diff 1, mapped 1.0
chr11	72263417	72525164	T063469_T063469	0	-	72263417	72525164	0	78	234,345,384,3102,107,39,113,100,75,48,88,123,71,123,78,113,178,73,64,40,112,131,66,42,75,53,154,60,56,110,89,90,62,73,6608,2576,150,64,51,83,33,146,114,118,69,87,148,106,213,164,52,196,103,136,135,175,183,86,200,107,203,121,70,144,131,68,170,553,83,2815,53,118,104,148,320,1403,162,334,	0,1753,4054,22119,25859,26102,26523,26910,27160,28203,28512,28983,29503,30070,31064,31827,32177,32498,32997,33180,33696,36410,36801,37377,37533,37818,38053,38923,44219,45136,52764,56288,78704,89880,121763,130733,133669,135066,135315,136082,140380,140952,141319,142607,143014,143169,143345,144176,144610,144950,145225,145538,146632,147044,149276,150532,151779,153432,154802,157497,158012,158648,159057,159823,160065,160803,161779,174247,180142,199955,203328,205394,206157,206861,228602,240502,251226,261413,
#Boundary problem: need 77, got 76, diff 1, mapped 1.0
chr11	72263417	72525164	T063470_T063470	0	-	72263417	72525164	0	77	234,345,384,423,1454,107,39,113,100,75,48,88,123,71,123,78,113,178,73,64,40,112,131,66,42,75,53,154,60,56,110,89,90,62,73,6608,2576,150,64,51,83,146,114,118,69,87,148,106,213,164,52,196,103,136,135,175,86,200,107,203,121,70,144,131,68,170,553,83,2815,53,118,104,148,320,1403,162,334,	0,1753,4054,23076,23767,25859,26102,26523,26910,27160,28203,28512,28983,29503,30070,31064,31827,32177,32498,32997,33180,33696,36410,36801,37377,37533,37818,38053,38923,44219,45136,52764,56288,78704,89880,121763,130733,133669,135066,135315,136082,140952,141319,142607,143014,143169,143345,144176,144610,144950,145225,145538,146632,147044,149276,150532,153432,154802,157497,158012,158648,159057,159823,160065,160803,161779,174247,180142,199955,203328,205394,206157,206861,228602,240502,251226,261413,
#Boundary problem: need 72, got 71, diff 1, mapped 1.0
chr11	72263417	72492842	T063466_T063466	0	-	72263417	72492842	0	72	234,345,384,3102,107,39,113,100,75,48,88,123,71,123,78,113,178,73,64,40,112,131,66,42,75,53,154,60,56,110,89,90,73,6608,2576,150,64,51,83,33,146,114,118,69,87,148,106,213,164,52,196,103,136,135,175,86,200,107,203,121,70,144,131,68,170,553,2815,53,104,148,320,134,	0,1753,4054,22119,25859,26102,26523,26910,27160,28203,28512,28983,29503,30070,31064,31827,32177,32498,32997,33180,33696,36410,36801,37377,37533,37818,38053,38923,44219,45136,52764,56288,89880,121763,130733,133669,135066,135315,136082,140380,140952,141319,142607,143014,143169,143345,144176,144610,144950,145225,145538,146632,147044,149276,150532,153432,154802,157497,158012,158648,159057,159823,160065,160803,161779,174247,199955,203328,206157,206861,228602,229291,
#Boundary problem: need 77, got 76, diff 1, mapped 1.0
chr11	72263417	72493699	T063467_T063467	0	-	72263417	72493699	0	77	234,345,384,423,1454,107,39,113,100,75,48,88,123,71,123,78,113,178,73,64,40,112,131,66,42,75,53,154,60,56,110,89,90,73,8711,135,2258,150,64,51,83,33,146,114,118,69,87,148,106,213,164,52,196,103,136,135,175,183,86,200,107,203,121,70,144,131,68,170,553,83,2815,53,118,104,148,320,991,	0,1753,4054,23076,23767,25859,26102,26523,26910,27160,28203,28512,28983,29503,30070,31064,31827,32177,32498,32997,33180,33696,36410,36801,37377,37533,37818,38053,38923,44219,45136,52764,56288,89880,121763,130733,131051,133669,135066,135315,136082,140380,140952,141319,142607,143014,143169,143345,144176,144610,144950,145225,145538,146632,147044,149276,150532,151779,153432,154802,157497,158012,158648,159057,159823,160065,160803,161779,174247,180142,199955,203328,205394,206157,206861,228602,229291,
#Boundary problem: need 77, got 76, diff 1, mapped 1.0
chr11	72263417	72524951	T063468_T063468	0	-	72263417	72524951	0	77	234,345,384,3102,107,39,113,100,75,48,88,123,71,123,78,113,178,73,64,40,112,131,66,42,75,53,154,60,56,110,89,90,62,73,6608,2576,150,64,51,83,33,146,114,118,69,87,148,106,213,164,52,196,103,136,135,175,183,86,200,107,203,121,70,144,131,68,170,553,2815,53,118,104,148,320,108,868,121,	0,1753,4054,22119,25859,26102,26523,26910,27160,28203,28512,28983,29503,30070,31064,31827,32177,32498,32997,33180,33696,36410,36801,37377,37533,37818,38053,38923,44219,45136,52764,56288,78704,89880,121763,130733,133669,135066,135315,136082,140380,140952,141319,142607,143014,143169,143345,144176,144610,144950,145225,145538,146632,147044,149276,150532,151779,153432,154802,157497,158012,158648,159057,159823,160065,160803,161779,174247,199955,203328,205394,206157,206861,228602,240502,241037,261413,
#Boundary problem: need 73, got 72, diff 1, mapped 1.0
chr11	72286493	72493469	T063473_T063473	0	-	72286493	72493469	0	73	423,1454,107,39,113,100,75,48,88,123,71,123,78,113,178,73,64,40,112,131,66,42,75,53,154,60,56,110,89,90,62,73,6608,2576,150,64,51,83,146,114,118,69,87,148,106,213,164,52,196,103,136,135,175,183,86,200,107,203,121,70,144,131,68,170,553,83,2815,53,118,104,148,320,761,	0,691,2783,3026,3447,3834,4084,5127,5436,5907,6427,6994,7988,8751,9101,9422,9921,10104,10620,13334,13725,14301,14457,14742,14977,15847,21143,22060,29688,33212,55628,66804,98687,107657,110593,111990,112239,113006,117876,118243,119531,119938,120093,120269,121100,121534,121874,122149,122462,123556,123968,126200,127456,128703,130356,131726,134421,134936,135572,135981,136747,136989,137727,138703,151171,157066,176879,180252,182318,183081,183785,205526,206215,
#Boundary problem: need 34, got 33, diff 1, mapped 1.0
chr11	72378938	72433386	T063484_T063484	0	-	72378938	72433386	0	34	532,13859,2576,150,64,51,83,33,146,114,118,69,87,148,106,213,164,52,196,103,136,135,175,86,200,107,203,121,70,144,131,68,170,492,	0,1115,15212,18148,19545,19794,20561,24859,25431,25798,27086,27493,27648,27824,28655,29089,29429,29704,30017,31111,31523,33755,35011,37911,39281,41976,42491,43127,43536,44302,44544,45282,46258,53956,
#Boundary problem: need 35, got 34, diff 1, mapped 1.0
chr11	72378938	72433386	T063485_T063485	0	-	72378938	72433386	0	35	532,13859,2576,150,64,51,83,33,146,114,118,69,87,148,106,213,164,52,196,103,136,135,175,183,86,200,107,203,121,70,144,131,68,170,492,	0,1115,15212,18148,19545,19794,20561,24859,25431,25798,27086,27493,27648,27824,28655,29089,29429,29704,30017,31111,31523,33755,35011,36258,37911,39281,41976,42491,43127,43536,44302,44544,45282,46258,53956,
#Boundary problem: need 36, got 35, diff 1, mapped 1.0
chr11	72378938	72450076	T063486_T063486	0	-	72378938	72450076	0	36	532,13859,2576,150,64,51,83,146,114,118,69,87,148,106,213,164,52,196,103,136,135,175,183,86,200,107,203,121,70,144,131,68,170,553,83,79,	0,1115,15212,18148,19545,19794,20561,25431,25798,27086,27493,27648,27824,28655,29089,29429,29704,30017,31111,31523,33755,35011,36258,37911,39281,41976,42491,43127,43536,44302,44544,45282,46258,58726,64621,71059,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr11	102706525	102745881	T066562_T066562	0	-	102706525	102745881	0	19	432,104,160,134,145,165,126,149,245,19759,107,160,134,124,161,126,149,248,316,	0,1503,2756,3315,4313,4634,6359,6636,6877,7647,28351,29981,30520,31475,32113,35798,36008,37069,39040,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr11	102758686	102826558	T066566_T066566	0	-	102758686	102826558	0	11	4226,50095,104,160,134,118,162,126,149,242,244,	0,6314,57688,59933,61067,62152,64054,66198,66500,67294,67628,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr11	118928134	118952692	T068554_T068554	0	+	118928134	118952692	0	17	208,546,146,136,164,248,202,152,187,147,189,162,140,203,172,223,524,	0,10043,11774,12017,12809,14171,15773,16375,19472,20076,20453,20748,21140,21370,21704,23667,24034,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr11	118928134	118952692	T068555_T068555	0	+	118928134	118952692	0	18	208,136,544,148,136,164,248,202,152,187,147,189,162,140,203,172,223,524,	0,8643,10043,11772,12017,12809,14171,15773,16375,19472,20076,20453,20748,21140,21370,21704,23667,24034,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr11	118928144	118952692	T068557_T068557	0	+	118928144	118952692	0	18	198,269,544,148,136,164,248,202,152,187,147,189,162,140,203,172,223,524,	0,8500,10033,11762,12007,12799,14161,15763,16365,19462,20066,20443,20738,21130,21360,21694,23657,24024,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr11	118928144	118952692	T068556_T068556	0	+	118928144	118952692	0	18	198,269,546,146,136,164,248,202,152,187,147,189,162,140,203,172,223,524,	0,8500,10033,11764,12007,12799,14161,15763,16365,19462,20066,20443,20738,21130,21360,21694,23657,24024,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr11	118935017	118952692	T068563_T068563	0	+	118935017	118952692	0	18	657,269,544,148,136,164,248,202,152,187,147,189,162,140,203,172,223,524,	0,1627,3160,4889,5134,5926,7288,8890,9492,12589,13193,13570,13865,14257,14487,14821,16784,17151,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr11	118935017	118952692	T068562_T068562	0	+	118935017	118952692	0	18	657,269,546,146,136,164,248,202,152,187,147,189,162,140,203,172,223,524,	0,1627,3160,4891,5134,5926,7288,8890,9492,12589,13193,13570,13865,14257,14487,14821,16784,17151,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr11	118936777	118952692	T068564_T068564	0	+	118936777	118952692	0	17	136,546,148,136,164,248,202,152,187,147,189,162,140,203,172,223,524,	0,1398,3129,3374,4166,5528,7130,7732,10829,11433,11810,12105,12497,12727,13061,15024,15391,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr11	118938528	118952692	T068565_T068565	0	+	118938528	118952692	0	15	193,148,164,248,202,152,187,147,189,162,140,203,172,223,524,	0,1378,2415,3777,5379,5981,9078,9682,10059,10354,10746,10976,11310,13273,13640,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr11	118938723	118952692	T068566_T068566	0	+	118938723	118952692	0	16	190,171,136,164,248,202,152,187,147,189,162,140,203,172,223,524,	0,1160,1428,2220,3582,5184,5786,8883,9487,9864,10159,10551,10781,11115,13078,13445,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr11	119348680	119378876	T068763_T068763	0	-	119348680	119378876	0	5	184,5236,351,189,48,	0,1167,11408,12822,30148,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr11	119446511	119460023	T068785_T068785	0	-	119446511	119460023	0	2	5475,4107,	0,9405,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr11	119446511	119459069	T068782_T068782	0	-	119446511	119459069	0	2	5462,3153,	0,9405,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr11	119446511	119458241	T068781_T068781	0	-	119446511	119458241	0	4	5381,128,40,2325,	0,6033,6594,9405,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr11	119446511	119456843	T068778_T068778	0	-	119446511	119456843	0	3	5475,762,927,	0,6017,9405,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr11	119446511	119458241	T068780_T068780	0	-	119446511	119458241	0	3	5475,40,2451,	0,6594,9279,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr11	119446511	119460023	T068784_T068784	0	-	119446511	119460023	0	3	5475,40,4107,	0,6594,9405,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr11	119446511	119459075	T068783_T068783	0	-	119446511	119459075	0	3	5475,617,3159,	0,6017,9405,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr11	119446511	119457326	T068779_T068779	0	-	119446511	119457326	0	4	5475,144,40,1410,	0,6017,6594,9405,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr11	119446511	119460023	T068786_T068786	0	-	119446511	119460023	0	2	5381,4107,	0,9405,
#Partially deleted in new
chr12	145756	150176	T071149_T071149	0	-	145756	150176	0	2	1626,1125,	0,3295,
#Partially deleted in new
chr12	145756	148507	T071148_T071148	0	-	145756	148507	0	1	2751,	0,
#Partially deleted in new
chr12	148611	151115	T071150_T071150	0	-	148611	151115	0	1	2504,	0,
#Partially deleted in new
chr12	148611	151201	T071151_T071151	0	-	148611	151201	0	2	681,146,	0,2444,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr12	9921529	9997682	T073670_T073670	0	+	9921529	9997682	0	9	70,88,75,114,99,150,143,113,666,	0,251,2057,31083,63382,64369,72878,73390,75487,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr12	9952608	9997682	T073672_T073672	0	+	9952608	9997682	0	6	118,99,163,143,113,666,	0,32303,33277,41799,42311,44408,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr12	9952608	9997682	T073673_T073673	0	+	9952608	9997682	0	6	118,99,150,143,132,666,	0,32303,33290,41799,42292,44408,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr12	9979891	9997682	T073677_T073677	0	+	9979891	9997682	0	6	334,99,150,143,132,666,	0,5020,6007,14516,15009,17125,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr12	9979891	9997682	T073676_T073676	0	+	9979891	9997682	0	6	334,99,150,143,113,666,	0,5020,6007,14516,15028,17125,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr12	9980054	9997682	T073679_T073679	0	+	9980054	9997682	0	6	171,99,293,143,132,666,	0,4857,5701,14353,14846,16962,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr12	9984911	9997682	T073680_T073680	0	+	9984911	9997682	0	5	99,163,143,132,666,	0,974,9496,9989,12105,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr12	80849165	80855943	T083008_T083008	0	-	80849165	80855943	0	4	359,200,70,29,	0,1528,3367,6749,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr12	124534292	124580034	T088574_T088574	0	+	124534292	124580034	0	4	283,214,130,4916,	0,38518,40295,40826,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr12	124534292	124580034	T088575_T088575	0	+	124534292	124580034	0	3	283,1907,4916,	0,38518,40826,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr12	124568856	124573212	T088580_T088580	0	+	124568856	124573212	0	2	1588,402,	0,3954,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr13	20525047	20666213	T090909_T090909	0	+	20525047	20666213	0	28	94,100,1526,69,47,857,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2131,6408,9050,19117,42155,51942,54166,55466,68639,75704,76295,80411,83346,85829,100525,101369,107667,108539,110145,111938,113543,115943,116331,131108,131873,132748,134914,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr13	20531632	20666213	T090916_T090916	0	+	20531632	20666213	0	26	1467,69,47,857,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2465,12532,35570,45357,47581,48881,62054,69119,69710,73826,76761,79244,93940,94784,101082,101954,103560,105353,106958,109358,109746,124523,125288,126163,128329,
#Boundary problem: need 25, got 24, diff 1, mapped 1.0
chr13	20531632	20666213	T090915_T090915	0	+	20531632	20666213	0	25	1467,69,857,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2465,35570,45357,47581,48881,62054,69119,69710,73826,76761,79244,93940,94784,101082,101954,103560,105353,106958,109358,109746,124523,125288,126163,128329,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr13	20531632	20666213	T090914_T090914	0	+	20531632	20666213	0	27	1643,69,47,502,94,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2465,12532,35570,36333,45357,47581,48881,62054,69119,69710,73826,76761,79244,93940,94784,101082,101954,103560,105353,106958,109358,109746,124523,125288,126163,128329,
#Boundary problem: need 25, got 24, diff 1, mapped 1.0
chr13	20531632	20666213	T090912_T090912	0	+	20531632	20666213	0	25	1349,69,857,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2465,35570,45357,47581,48881,62054,69119,69710,73826,76761,79244,93940,94784,101082,101954,103560,105353,106958,109358,109746,124523,125288,126163,128329,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr13	20531632	20666213	T090917_T090917	0	+	20531632	20666213	0	26	1349,69,502,94,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2465,35570,36333,45357,47581,48881,62054,69119,69710,73826,76761,79244,93940,94784,101082,101954,103560,105353,106958,109358,109746,124523,125288,126163,128329,
#Boundary problem: need 25, got 24, diff 1, mapped 1.0
chr13	20531632	20666213	T090911_T090911	0	+	20531632	20666213	0	25	1643,69,857,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2465,35570,45357,47581,48881,62054,69119,69710,73826,76761,79244,93940,94784,101082,101954,103560,105353,106958,109358,109746,124523,125288,126163,128329,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr13	20531632	20666213	T090913_T090913	0	+	20531632	20666213	0	27	1349,69,47,502,94,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2465,12532,35570,36333,45357,47581,48881,62054,69119,69710,73826,76761,79244,93940,94784,101082,101954,103560,105353,106958,109358,109746,124523,125288,126163,128329,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr13	20531674	20666213	T090920_T090920	0	+	20531674	20666213	0	26	1307,69,857,286,166,213,72,150,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2423,35528,45315,47539,48839,62012,67691,69077,69668,73784,76719,79202,93898,94742,101040,101912,103518,105311,106916,109316,109704,124481,125246,126121,128287,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr13	20531674	20666213	T090919_T090919	0	+	20531674	20666213	0	26	1601,69,47,857,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2423,12490,35528,45315,47539,48839,62012,69077,69668,73784,76719,79202,93898,94742,101040,101912,103518,105311,106916,109316,109704,124481,125246,126121,128287,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr13	20531674	20666213	T090918_T090918	0	+	20531674	20666213	0	26	1601,69,502,94,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2423,35528,36291,45315,47539,48839,62012,69077,69668,73784,76719,79202,93898,94742,101040,101912,103518,105311,106916,109316,109704,124481,125246,126121,128287,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr13	20531674	20666213	T090922_T090922	0	+	20531674	20666213	0	26	1307,69,857,286,166,213,72,151,116,80,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2423,35528,45315,47539,48839,62012,69077,69668,70450,73784,76719,79202,93898,94742,101040,101912,103518,105311,106916,109316,109704,124481,125246,126121,128287,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr13	20531674	20666213	T090921_T090921	0	+	20531674	20666213	0	27	1307,69,502,94,286,166,213,72,150,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2423,35528,36291,45315,47539,48839,62012,67691,69077,69668,73784,76719,79202,93898,94742,101040,101912,103518,105311,106916,109316,109704,124481,125246,126121,128287,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr13	20531933	20666213	T090923_T090923	0	+	20531933	20666213	0	26	1166,69,502,94,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2164,35269,36032,45056,47280,48580,61753,68818,69409,73525,76460,78943,93639,94483,100781,101653,103259,105052,106657,109057,109445,124222,124987,125862,128028,
#Boundary problem: need 27, got 26, diff 1, mapped 1.0
chr13	20531933	20666213	T090924_T090924	0	+	20531933	20666213	0	27	1166,69,47,502,94,286,166,213,72,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,2164,12231,35269,36032,45056,47280,48580,61753,68818,69409,73525,76460,78943,93639,94483,100781,101653,103259,105052,106657,109057,109445,124222,124987,125862,128028,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr13	20532888	20666213	T090925_T090925	0	+	20532888	20666213	0	28	93,69,47,502,94,286,166,213,72,150,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,1209,11276,34314,35077,44101,46325,47625,60798,66477,67863,68454,72570,75505,77988,92684,93528,99826,100698,102304,104097,105702,108102,108490,123267,124032,124907,127073,
#Boundary problem: need 28, got 27, diff 1, mapped 1.0
chr13	20533099	20666213	T090927_T090927	0	+	20533099	20666213	0	28	176,69,47,502,94,286,166,213,72,150,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,998,11065,34103,34866,43890,46114,47414,60587,66266,67652,68243,72359,75294,77777,92473,93317,99615,100487,102093,103886,105491,107891,108279,123056,123821,124696,126862,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr13	20593758	20666213	T090929_T090929	0	+	20593758	20666213	0	19	5757,151,116,117,151,173,166,35,130,116,172,126,95,169,152,115,252,121,6252,	0,6993,7584,11700,14635,17118,31814,32658,38956,39828,41434,43227,44832,47232,47620,62397,63162,64037,66203,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr13	45409130	45447786	T093890_T093890	0	-	45409130	45447786	0	2	1350,928,	0,37728,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr13	45409130	45447389	T093889_T093889	0	-	45409130	45447389	0	2	1404,531,	0,37728,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr13	45409130	45447786	T093891_T093891	0	-	45409130	45447786	0	3	1404,191,928,	0,9428,37728,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr13	45444460	45447389	T093893_T093893	0	-	45444460	45447389	0	2	28,531,	0,2398,
#Partially deleted in new
chr13	86910322	86926202	T097117_T097117	0	+	86910322	86926202	0	2	2215,1228,	0,14652,
#Partially deleted in new
chr13	86912042	86926202	T097118_T097118	0	+	86912042	86926202	0	3	495,206,1228,	0,7827,12932,
#Partially deleted in new
chr13	86914908	86926202	T097119_T097119	0	+	86914908	86926202	0	3	45,206,1228,	0,4961,10066,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr13	86914928	86926202	T097120_T097120	0	+	86914928	86926202	0	2	25,1228,	0,10046,
#Partially deleted in new
chr13	86919420	86926202	T097121_T097121	0	+	86919420	86926202	0	2	655,1228,	0,5554,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr13	114626324	114639950	T099933_T099933	0	-	114626324	114639950	0	2	5127,8315,	0,5311,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr13	114626324	114639950	T099936_T099936	0	-	114626324	114639950	0	2	1105,11588,	0,2038,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr13	114626324	114639950	T099934_T099934	0	-	114626324	114639950	0	2	1129,11588,	0,2038,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr13	114626324	114639950	T099935_T099935	0	-	114626324	114639950	0	3	5127,2876,4994,	0,5311,8632,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr14	19502351	19552675	T100093_T100093	0	+	19502351	19552675	0	11	3818,154,158,107,113,111,165,114,113,112,194,	0,5030,13104,15149,17448,25737,35682,38145,40675,42785,50130,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr14	19502351	19552675	T100092_T100092	0	+	19502351	19552675	0	13	3818,154,158,107,113,111,134,126,165,114,113,112,194,	0,5030,13104,15149,17448,25737,27684,29348,35682,38145,40675,42785,50130,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr14	19502351	19552675	T100091_T100091	0	+	19502351	19552675	0	7	3818,154,158,107,113,112,194,	0,5030,13104,15149,17448,42785,50130,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	19536025	19552675	T100111_T100111	0	+	19536025	19552675	0	5	2173,114,113,112,194,	0,4471,7001,9111,16456,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	19552836	19563538	T100112_T100112	0	+	19552836	19563538	0	6	1101,115,174,1181,107,135,	0,5880,6154,7881,9157,10567,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr14	19553009	19590697	T100114_T100114	0	+	19553009	19590697	0	13	928,115,174,256,107,138,71,71,45,167,49,119,6101,	0,5707,5981,7708,8984,10394,13002,18338,20090,21176,25315,29961,31587,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr14	19641464	19874738	T100123_T100123	0	+	19641464	19874738	0	10	934,7055,111,148,112,138,136,91,16985,28,	0,1607,10779,12160,12428,14269,14624,39130,42227,233246,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr14	19641464	19874738	T100122_T100122	0	+	19641464	19874738	0	10	929,7055,111,148,112,138,136,91,16985,28,	0,1607,10779,12160,12428,14269,14624,39130,42227,233246,
#Partially deleted in new
chr14	19741958	19749897	T100149_T100149	0	+	19741958	19749897	0	2	83,7142,	0,797,
#Partially deleted in new
chr14	19741958	19749897	T100148_T100148	0	+	19741958	19749897	0	2	83,7172,	0,767,
#Partially deleted in new
chr14	19741958	19760522	T100150_T100150	0	+	19741958	19760522	0	3	83,77,2319,	0,767,16245,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	19741971	19832493	T100153_T100153	0	+	19741971	19832493	0	3	70,5977,5294,	0,691,85228,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr14	19741971	19749897	T100151_T100151	0	+	19741971	19749897	0	3	70,4500,2340,	0,691,5586,
#Partially deleted in new
chr14	19741971	19832493	T100154_T100154	0	+	19741971	19832493	0	3	70,5249,4709,	0,691,85813,
#Partially deleted in new
chr14	19741971	19749897	T100152_T100152	0	+	19741971	19749897	0	2	70,7235,	0,691,
#Partially deleted in new
chr14	19756725	19760522	T100157_T100157	0	+	19756725	19760522	0	1	3797,	0,
#Partially deleted in new
chr14	19809029	19832493	T100165_T100165	0	+	19809029	19832493	0	1	23464,	0,
#Partially deleted in new
chr14	19817511	19820045	T100166_T100166	0	-	19817511	19820045	0	3	1842,126,238,	0,1898,2296,
#Partially deleted in new
chr14	19817511	19820153	T100167_T100167	0	-	19817511	19820153	0	2	1842,744,	0,1898,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr14	19855602	19976658	T100174_T100174	0	-	19855602	19976658	0	11	31,1335,79,91,138,112,3885,66,270,4041,600,	0,133,16833,39097,63889,65756,69637,100277,107817,113274,120456,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr14	19855602	19976658	T100171_T100171	0	-	19855602	19976658	0	8	31,1335,91,3885,66,270,4041,600,	0,133,39097,69637,100277,107817,113274,120456,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr14	19855602	19976658	T100175_T100175	0	-	19855602	19976658	0	12	31,1335,79,91,136,138,112,3885,66,270,4041,600,	0,133,16833,39097,63535,63889,65756,69637,100277,107817,113274,120456,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr14	19855602	19976658	T100173_T100173	0	-	19855602	19976658	0	11	31,1335,91,112,148,111,3885,66,270,4041,600,	0,133,39097,65756,65988,67410,69637,100277,107817,113274,120456,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr14	19855602	19976658	T100177_T100177	0	-	19855602	19976658	0	10	31,1335,79,91,112,3885,66,270,4041,600,	0,133,16833,39097,65756,69637,100277,107817,113274,120456,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr14	19855602	19975373	T100170_T100170	0	-	19855602	19975373	0	10	31,1335,91,136,138,112,148,111,3885,6497,	0,133,39097,63535,63889,65756,65988,67410,69637,113274,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr14	19855602	19976658	T100172_T100172	0	-	19855602	19976658	0	9	31,1335,91,112,3885,66,270,4041,600,	0,133,39097,65756,69637,100277,107817,113274,120456,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr14	19855602	19976658	T100176_T100176	0	-	19855602	19976658	0	12	31,1335,91,136,138,112,115,3885,66,270,4041,600,	0,133,39097,63535,63889,65756,65988,69637,100277,107817,113274,120456,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr14	19931621	19995311	T100211_T100211	0	-	19931621	19995311	0	7	695,66,270,15996,3459,119,49,	0,24258,31798,37255,53959,58925,63641,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	19931621	19995311	T100212_T100212	0	-	19931621	19995311	0	6	695,66,15996,3459,119,49,	0,24258,37255,53959,58925,63641,
#Boundary problem: need 19, got 17, diff 2, mapped 0.9
chr14	19931621	20020375	T100214_T100214	0	-	19931621	20020375	0	19	695,66,270,4662,1143,7855,3754,119,49,167,45,71,71,138,107,1193,174,115,676,	0,24258,31798,37255,43894,45665,53664,58925,63641,67663,68871,70603,75940,78481,79929,80131,82877,83210,88078,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr14	19931621	20020455	T100215_T100215	0	-	19931621	20020455	0	16	695,66,6639,10589,119,49,167,45,71,71,138,107,1193,174,115,756,	0,24258,37255,46829,58925,63641,67663,68871,70603,75940,78481,79929,80131,82877,83210,88078,
#Boundary problem: need 19, got 17, diff 2, mapped 0.9
chr14	19935616	20020375	T100233_T100233	0	-	19935616	20020375	0	19	1324,262,66,270,5204,5878,3459,119,49,167,45,71,71,138,107,1193,174,115,676,	0,8942,20263,27803,33260,43378,49964,54930,59646,63668,64876,66608,71945,74486,75934,76136,78882,79215,84083,
#Boundary problem: need 11, got 9, diff 2, mapped 0.8
chr14	19935616	20002295	T100223_T100223	0	-	19935616	20002295	0	11	1324,556,66,270,4547,6537,3459,119,167,45,71,	0,8942,20263,27803,33260,42719,49964,54930,63668,64876,66608,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr14	19935616	20020375	T100234_T100234	0	-	19935616	20020375	0	17	1324,262,66,4041,4454,8526,119,167,45,71,71,138,107,1193,174,115,676,	0,8942,20263,33260,38464,44897,54930,63668,64876,66608,71945,74486,75934,76136,78882,79215,84083,
#Boundary problem: need 17, got 15, diff 2, mapped 0.9
chr14	19935616	20020375	T100232_T100232	0	-	19935616	20020375	0	17	5280,262,66,4662,7855,3754,119,167,45,71,71,138,107,1193,174,115,676,	0,8942,20263,33260,41670,49669,54930,63668,64876,66608,71945,74486,75934,76136,78882,79215,84083,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr14	19935616	20020455	T100237_T100237	0	-	19935616	20020455	0	16	9204,66,270,20163,119,49,167,45,71,71,138,107,1193,174,115,756,	0,20263,27803,33260,54930,59646,63668,64876,66608,71945,74486,75934,76136,78882,79215,84083,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr14	19935616	20020375	T100235_T100235	0	-	19935616	20020375	0	15	764,66,4041,10045,119,167,45,71,71,138,107,1193,174,115,676,	0,20263,33260,43378,54930,63668,64876,66608,71945,74486,75934,76136,78882,79215,84083,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr14	19935616	20004830	T100225_T100225	0	-	19935616	20004830	0	12	1324,556,66,270,5204,7043,3459,119,49,167,45,2606,	0,8942,20263,27803,33260,42213,49964,54930,59646,63668,64876,66608,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr14	19935616	20020455	T100236_T100236	0	-	19935616	20020455	0	15	9204,66,20163,119,49,167,45,71,71,138,107,1193,174,115,756,	0,20263,33260,54930,59646,63668,64876,66608,71945,74486,75934,76136,78882,79215,84083,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr14	19935616	19995311	T100222_T100222	0	-	19935616	19995311	0	8	1324,262,66,270,15996,3459,119,49,	0,8942,20263,27803,33260,49964,54930,59646,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr14	20067757	20110254	T100245_T100245	0	+	20067757	20110254	0	17	297,141,64,65,217,238,73,154,248,82,442,127,122,84,110,123,2427,	0,3622,3843,4879,5621,7007,10275,12432,13759,14925,16420,17239,17662,18539,19900,38413,40070,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr14	20067829	20115271	T100247_T100247	0	+	20067829	20115271	0	15	225,141,64,65,238,73,154,248,82,443,127,122,84,110,220,	0,3550,3771,4807,6935,10203,12360,13687,14853,16348,17167,17590,18467,19828,47222,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr14	20067829	20129497	T100248_T100248	0	+	20067829	20129497	0	16	225,141,64,65,238,73,154,248,82,443,127,122,84,110,98,808,	0,3550,3771,4807,6935,10203,12360,13687,14853,16348,17167,17590,18467,19828,56486,60860,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr14	20067829	20101626	T100246_T100246	0	+	20067829	20101626	0	15	225,141,64,65,238,73,154,248,82,443,127,122,84,110,4688,	0,3550,3771,4807,6935,10203,12360,13687,14853,16348,17167,17590,18467,19828,29109,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr14	20067829	20154785	T100249_T100249	0	+	20067829	20154785	0	18	225,141,64,65,238,73,154,248,82,198,127,122,110,98,48,3865,109,3101,	0,3550,3771,4807,6935,10203,12360,13687,14853,16348,17167,17590,19828,56486,60860,78054,82180,83855,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr14	20068054	20110254	T100251_T100251	0	+	20068054	20110254	0	14	3466,64,65,238,73,248,82,443,127,122,84,110,123,2427,	0,3546,4582,6710,9978,13462,14628,16123,16942,17365,18242,19603,38116,39773,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr14	20070436	20154785	T100252_T100252	0	+	20070436	20154785	0	21	767,126,64,65,217,238,73,154,248,82,443,127,122,84,110,43,98,48,3865,109,3101,	0,958,1164,2200,2942,4328,7596,9753,11080,12246,13741,14560,14983,15860,17221,50822,53879,58253,75447,79573,81248,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr14	20071286	20129497	T100253_T100253	0	+	20071286	20129497	0	16	234,64,65,217,238,73,154,248,82,198,127,122,84,110,98,808,	0,314,1350,2092,3478,6746,8903,10230,11396,12891,13710,14133,15010,16371,53029,57403,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr14	20071314	20154785	T100254_T100254	0	+	20071314	20154785	0	18	206,64,65,238,73,154,248,82,443,127,122,84,110,43,98,48,4235,3101,	0,286,1322,3450,6718,8875,10202,11368,12863,13682,14105,14982,16343,49944,53001,57375,74569,80370,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	20105405	20110254	T100265_T100265	0	+	20105405	20110254	0	4	98,82,784,1006,	0,806,2422,3843,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	20106478	20110254	T100266_T100266	0	+	20106478	20110254	0	2	2133,1006,	0,2770,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	22389181	22408775	T100813_T100813	0	-	22389181	22408775	0	3	3084,309,4743,	0,10257,14851,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	22535783	22610238	T100841_T100841	0	-	22535783	22610238	0	5	1210,151,145,1395,1124,	0,61963,62395,71237,73331,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	22595098	22598743	T100846_T100846	0	-	22595098	22598743	0	2	2799,565,	0,3080,
#Partially deleted in new
chr14	22880718	22887438	T100933_T100933	0	+	22880718	22887438	0	1	6720,	0,
#Partially deleted in new
chr14	22881186	22887438	T100934_T100934	0	+	22881186	22887438	0	3	3373,320,111,	0,5456,6141,
#Partially deleted in new
chr14	22881222	22887438	T100936_T100936	0	+	22881222	22887438	0	2	3337,796,	0,5420,
#Partially deleted in new
chr14	22881222	22887438	T100935_T100935	0	+	22881222	22887438	0	2	5740,111,	0,6105,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	22882258	22901881	T100943_T100943	0	-	22882258	22901881	0	3	5667,137,224,	0,14422,19399,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	22882258	22902144	T100947_T100947	0	-	22882258	22902144	0	3	5667,134,487,	0,14422,19399,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	22882258	22901757	T100941_T100941	0	-	22882258	22901757	0	3	5667,134,4192,	0,14422,15307,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	22882258	22902235	T100948_T100948	0	-	22882258	22902235	0	2	5667,578,	0,19399,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	22882258	22901736	T100940_T100940	0	-	22882258	22901736	0	4	5667,134,172,79,	0,14422,15659,19399,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr14	22882258	22900987	T100939_T100939	0	-	22882258	22900987	0	6	5667,134,61,172,148,913,	0,14422,15307,15659,16849,17816,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	22882258	22898961	T100937_T100937	0	-	22882258	22898961	0	4	5667,134,61,1044,	0,14422,15307,15659,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	22882258	22899598	T100938_T100938	0	-	22882258	22899598	0	2	5667,2918,	0,14422,
#Boundary problem: need 7, got 5, diff 2, mapped 0.7
chr14	22882258	22901983	T100945_T100945	0	-	22882258	22901983	0	7	5667,134,61,172,148,123,326,	0,14422,15307,15659,16849,17816,19399,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	22882258	22901881	T100942_T100942	0	-	22882258	22901881	0	4	5667,134,61,224,	0,14422,15307,19399,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	22882258	22901983	T100946_T100946	0	-	22882258	22901983	0	5	5362,134,134,524,326,	0,5533,14422,15307,19399,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	22882258	22901983	T100944_T100944	0	-	22882258	22901983	0	4	5667,134,2632,326,	0,14422,15307,19399,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	23020999	23022028	T101010_T101010	0	-	23020999	23022028	0	2	304,376,	0,653,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	23062748	23072383	T101023_T101023	0	-	23062748	23072383	0	2	2368,7056,	0,2579,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	23062748	23072383	T101022_T101022	0	-	23062748	23072383	0	2	2368,7121,	0,2514,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	23062748	23072383	T101021_T101021	0	-	23062748	23072383	0	2	2368,6800,	0,2835,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	106331208	106400506	T112051_T112051	0	+	106331208	106400506	0	4	464,186,146,10312,	0,55713,56849,58986,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106345519	106400506	T112053_T112053	0	+	106345519	106400506	0	5	490,196,146,582,10312,	0,41402,42538,42880,44675,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	106345519	106400506	T112054_T112054	0	+	106345519	106400506	0	4	490,196,146,10312,	0,41402,42538,44675,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106346009	106400506	T112055_T112055	0	+	106346009	106400506	0	5	2105,10134,146,735,9423,	0,30974,42048,44185,45074,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106353001	106400506	T112059_T112059	0	+	106353001	106400506	0	6	17,186,146,103,108,10312,	0,33920,35056,35398,35872,37193,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106355592	106400506	T112077_T112077	0	+	106355592	106400506	0	6	28781,196,146,103,108,10312,	0,31329,32465,32807,33281,34602,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106355592	106400506	T112080_T112080	0	+	106355592	106400506	0	5	28781,196,146,582,10312,	0,31329,32465,32807,34602,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106355592	106400506	T112083_T112083	0	+	106355592	106400506	0	6	28781,186,146,103,108,10312,	0,31329,32465,32807,33281,34602,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106355592	106400506	T112084_T112084	0	+	106355592	106400506	0	5	28781,500,146,582,10312,	0,31329,32465,32807,34602,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106355592	106400506	T112076_T112076	0	+	106355592	106400506	0	5	6840,413,146,582,10312,	0,31416,32465,32807,34602,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr14	106355592	106400506	T112079_T112079	0	+	106355592	106400506	0	7	28781,1374,196,146,103,108,10312,	0,28937,31329,32465,32807,33281,34602,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106355592	106400506	T112074_T112074	0	+	106355592	106400506	0	6	15576,453,196,146,582,10312,	0,15635,31329,32465,32807,34602,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	106355592	106400506	T112081_T112081	0	+	106355592	106400506	0	3	31515,146,10312,	0,32465,34602,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106355592	106400506	T112069_T112069	0	+	106355592	106400506	0	5	28781,186,146,582,10312,	0,31329,32465,32807,34602,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	106355592	106400506	T112073_T112073	0	+	106355592	106400506	0	4	28781,1282,582,10312,	0,31329,32807,34602,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106355592	106400506	T112075_T112075	0	+	106355592	106400506	0	5	31190,196,146,582,10312,	0,31329,32465,32807,34602,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106355592	106400506	T112082_T112082	0	+	106355592	106400506	0	5	31515,146,103,108,10312,	0,32465,32807,33281,34602,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	106355592	106400506	T112070_T112070	0	+	106355592	106400506	0	4	31515,146,582,10312,	0,32465,32807,34602,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106355592	106400506	T112085_T112085	0	+	106355592	106400506	0	6	31190,196,146,103,108,10312,	0,31329,32465,32807,33281,34602,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106355974	106400506	T112087_T112087	0	+	106355974	106400506	0	6	146,196,146,103,108,10312,	0,30947,32083,32425,32899,34220,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106356120	106400506	T112088_T112088	0	+	106356120	106400506	0	6	1074,703,196,146,582,10312,	0,27550,30801,31937,32279,34074,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106356466	106400506	T112091_T112091	0	+	106356466	106400506	0	6	5966,196,146,103,108,10312,	0,30455,31591,31933,32407,33728,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106361366	106400506	T112094_T112094	0	+	106361366	106400506	0	6	809,99,196,935,582,10312,	0,967,25555,25902,27033,28828,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106362355	106400506	T112096_T112096	0	+	106362355	106400506	0	5	77,99,146,2530,9423,	0,24653,25702,26044,28728,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106362355	106400506	T112097_T112097	0	+	106362355	106400506	0	5	77,186,146,108,10312,	0,24566,25702,26518,27839,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	106365505	106400506	T112099_T112099	0	+	106365505	106400506	0	4	3035,8971,146,10312,	0,12641,22552,24689,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106365505	106400506	T112100_T112100	0	+	106365505	106400506	0	6	9306,196,146,103,108,10312,	0,21416,22552,22894,23368,24689,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106370250	106400506	T112102_T112102	0	+	106370250	106400506	0	5	4561,196,146,582,10312,	0,16671,17807,18149,19944,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106370272	106400506	T112104_T112104	0	+	106370272	106400506	0	6	1408,196,146,103,108,10312,	0,16649,17785,18127,18601,19922,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106378038	106400506	T112109_T112109	0	+	106378038	106400506	0	6	2679,186,146,103,108,10312,	0,8883,10019,10361,10835,12156,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106380100	106400506	T112116_T112116	0	+	106380100	106400506	0	6	1206,186,146,103,108,10312,	0,6821,7957,8299,8773,10094,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106380100	106400506	T112114_T112114	0	+	106380100	106400506	0	6	1206,196,146,103,108,10312,	0,6821,7957,8299,8773,10094,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106380100	106400506	T112113_T112113	0	+	106380100	106400506	0	5	1206,196,146,582,10312,	0,6821,7957,8299,10094,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106380100	106400506	T112115_T112115	0	+	106380100	106400506	0	5	1206,196,146,108,10312,	0,6821,7957,8773,10094,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106384782	106400506	T112123_T112123	0	+	106384782	106400506	0	6	1718,196,146,103,108,10312,	0,2139,3275,3617,4091,5412,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr14	106384782	106400506	T112120_T112120	0	+	106384782	106400506	0	5	1718,196,146,582,10312,	0,2139,3275,3617,5412,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106384782	106400506	T112121_T112121	0	+	106384782	106400506	0	6	1718,215,146,103,108,10312,	0,2139,3275,3617,4091,5412,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr14	106384782	106400506	T112122_T112122	0	+	106384782	106400506	0	6	1873,196,146,103,108,10312,	0,2139,3275,3617,4091,5412,
#Partially deleted in new
chr14	106478351	106485762	T112136_T112136	0	+	106478351	106485762	0	3	301,1251,4735,	0,1099,2676,
#Partially deleted in new
chr14	106478351	106485762	T112137_T112137	0	+	106478351	106485762	0	3	301,1257,2391,	0,2676,5020,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	106653599	106666933	T112152_T112152	0	+	106653599	106666933	0	4	74,3259,76,4213,	0,2274,8119,9121,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	106653642	106666933	T112154_T112154	0	+	106653642	106666933	0	4	31,3445,76,4213,	0,2045,8076,9078,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	106692311	106692993	T112165_T112165	0	+	106692311	106692993	0	2	42,512,	0,170,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	106744181	106745541	T112169_T112169	0	+	106744181	106745541	0	2	380,877,	0,483,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	106744196	106745541	T112170_T112170	0	+	106744196	106745541	0	2	361,877,	0,468,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	106829779	106881318	T112193_T112193	0	+	106829779	106881318	0	3	65,2170,1185,	0,48096,50354,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	107019330	107025274	T112231_T112231	0	+	107019330	107025274	0	3	238,194,4140,	0,1517,1804,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	107175596	107177024	T112250_T112250	0	+	107175596	107177024	0	2	265,1065,	0,363,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	107178169	107178893	T112251_T112251	0	+	107178169	107178893	0	2	284,337,	0,387,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	107251481	107271949	T112263_T112263	0	+	107251481	107271949	0	4	1028,1285,1575,1048,	0,1362,16465,19420,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	107251481	107271949	T112265_T112265	0	+	107251481	107271949	0	3	1028,1285,4003,	0,1362,16465,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	107251481	107271949	T112264_T112264	0	+	107251481	107271949	0	3	1028,1285,1048,	0,1362,19420,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	107253216	107271949	T112270_T112270	0	+	107253216	107271949	0	2	724,4003,	0,14730,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	107253216	107271949	T112269_T112269	0	+	107253216	107271949	0	3	724,3288,7937,	0,6273,10796,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	107253964	107271949	T112275_T112275	0	+	107253964	107271949	0	2	164,1064,	0,16921,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr14	107258616	107271949	T112276_T112276	0	+	107258616	107271949	0	4	765,2938,5509,1048,	0,986,5396,12285,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr14	107274044	107286183	T112286_T112286	0	+	107274044	107286183	0	2	1878,10158,	0,1981,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	107274044	107286183	T112285_T112285	0	+	107274044	107286183	0	3	1878,2013,5912,	0,1981,6227,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr14	107274044	107286183	T112284_T112284	0	+	107274044	107286183	0	3	1878,378,7381,	0,3827,4758,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr15	22038756	22044625	T112566_T112566	0	+	22038756	22044625	0	2	4672,567,	0,5302,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr15	22040048	22048933	T112567_T112567	0	+	22040048	22048933	0	2	4660,3734,	0,5151,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr15	22156809	22385577	T112593_T112593	0	+	22156809	22385577	0	8	470,140,109,95,92,89,204,3114,	0,2305,132807,162067,189862,190462,190773,225654,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr15	22156809	22385577	T112594_T112594	0	+	22156809	22385577	0	8	470,140,109,95,96,89,204,3114,	0,2305,132807,162067,189862,190462,190773,225654,
#Partially deleted in new
chr15	22662213	22728690	T112683_T112683	0	+	22662213	22728690	0	3	999,92,70,	0,2761,66407,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr15	74667150	74691463	T119497_T119497	0	+	74667150	74691463	0	3	29,563,5817,	0,15708,18496,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr15	74670964	74691463	T119500_T119500	0	+	74670964	74691463	0	4	558,83,563,5817,	0,2945,11894,14682,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr16	3219656	3235507	T126168_T126168	0	-	3219656	3235507	0	2	1435,13830,	0,2021,
#Partially deleted in new
chr16	46385800	46409271	T131650_T131650	0	-	46385800	46409271	0	2	9666,1889,	0,21582,
#Partially deleted in new
chr16	46385800	46400805	T131649_T131649	0	-	46385800	46400805	0	3	7858,3651,26,	0,7946,14979,
#Partially deleted in new
chr16	46385800	46412446	T131651_T131651	0	-	46385800	46412446	0	2	3013,480,	0,26166,
#Partially deleted in new
chr16	46385811	46402317	T131652_T131652	0	+	46385811	46402317	0	2	4347,250,	0,16256,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	1	5900	T139142_T139142	0	+	1	5900	0	2	785,4459,	0,1440,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	1029874	1033045	T139342_T139342	0	+	1029874	1033045	0	2	542,1339,	0,1832,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	1048925	1050918	T139347_T139347	0	+	1048925	1050918	0	2	850,1010,	0,983,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	1048925	1050918	T139346_T139346	0	+	1048925	1050918	0	2	950,943,	0,1050,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	1049150	1052097	T139348_T139348	0	+	1049150	1052097	0	2	1059,206,	0,2741,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr17	8669587	8776006	T141549_T141549	0	-	8669587	8776006	0	22	880,785,113,116,90,71,91,111,123,79,424,87,157,184,70,133,69,114,92,84,104,5161,	0,36375,37771,52813,55576,56316,56725,57116,60901,61841,62296,63435,66618,69002,70276,70520,71532,72025,72293,73343,83511,101258,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr17	8700197	8776006	T141555_T141555	0	-	8700197	8776006	0	22	2026,649,113,116,90,71,91,111,123,79,424,87,157,184,70,133,69,116,92,84,104,5161,	0,5901,7161,22203,24966,25706,26115,26506,30291,31231,31686,32825,36008,38392,39666,39910,40922,41415,41683,42733,52901,70648,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr17	8705901	8741876	T141557_T141557	0	-	8705901	8741876	0	15	846,113,90,71,91,111,79,424,87,157,184,70,133,69,264,	0,1457,19262,20002,20411,20802,25527,25982,27121,30304,32688,33962,34206,35218,35711,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr17	8705901	8771028	T141560_T141560	0	-	8705901	8771028	0	21	846,113,116,90,71,91,111,123,79,424,87,157,184,70,133,69,111,92,84,104,183,	0,1457,16499,19262,20002,20411,20802,24587,25527,25982,27121,30304,32688,33962,34206,35218,35711,35979,37029,47197,64944,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr17	8705901	8770999	T141558_T141558	0	-	8705901	8770999	0	21	846,113,116,90,71,91,111,123,79,424,87,157,184,70,133,69,56,92,84,104,154,	0,1457,16499,19262,20002,20411,20802,24587,25527,25982,27121,30304,32688,33962,34206,35218,35711,35979,37029,47197,64944,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr17	8705901	8774128	T141563_T141563	0	-	8705901	8774128	0	21	846,113,116,90,71,91,111,123,79,424,87,157,184,70,133,69,92,84,104,142,479,	0,1457,16499,19262,20002,20411,20802,24587,25527,25982,27121,30304,32688,33962,34206,35218,35979,37029,47197,64944,67748,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr17	8705901	8771010	T141559_T141559	0	-	8705901	8771010	0	20	846,113,116,90,71,91,111,123,79,424,72,157,184,70,133,69,360,84,104,165,	0,1457,16499,19262,20002,20411,20802,24587,25527,25982,27136,30304,32688,33962,34206,35218,35711,37029,47197,64944,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr17	8705901	8773266	T141562_T141562	0	-	8705901	8773266	0	20	846,113,116,90,71,91,111,123,79,424,87,157,184,70,133,69,92,84,104,2421,	0,1457,16499,19262,20002,20411,20802,24587,25527,25982,27121,30304,32688,33962,34206,35218,35979,37029,47197,64944,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr17	8705901	8773266	T141561_T141561	0	-	8705901	8773266	0	20	846,113,116,90,71,91,111,123,79,424,72,157,184,70,133,69,92,84,104,2421,	0,1457,16499,19262,20002,20411,20802,24587,25527,25982,27136,30304,32688,33962,34206,35218,35979,37029,47197,64944,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr17	21096497	21156751	T144027_T144027	0	-	21096497	21156751	0	7	1682,972,292,2857,10387,119,280,	0,4684,17751,20906,39858,50921,59974,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr17	21096497	21156751	T144026_T144026	0	-	21096497	21156751	0	6	1682,972,2857,10387,119,280,	0,4684,20906,39858,50921,59974,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr17	21096497	21156751	T144025_T144025	0	-	21096497	21156751	0	7	966,4552,292,2857,10387,119,280,	0,1104,17751,20906,39858,50921,59974,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr17	21096497	21156751	T144028_T144028	0	-	21096497	21156751	0	6	966,4552,2857,10387,119,280,	0,1104,20906,39858,50921,59974,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr17	21099907	21156746	T144031_T144031	0	-	21099907	21156746	0	7	681,887,654,2030,10387,119,275,	0,1359,17496,18323,36448,47511,56564,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr17	21099907	21156751	T144032_T144032	0	-	21099907	21156751	0	7	681,887,292,2857,10387,119,280,	0,1359,14341,17496,36448,47511,56564,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	21406752	21407889	T144088_T144088	0	-	21406752	21407889	0	2	960,45,	0,1092,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	21406752	21407889	T144089_T144089	0	-	21406752	21407889	0	2	957,45,	0,1092,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	21419775	21422338	T144094_T144094	0	+	21419775	21422338	0	3	817,126,677,	0,1094,1886,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr17	21420633	21428109	T144095_T144095	0	+	21420633	21428109	0	5	39,59,220,1246,1019,	0,1028,2112,3692,6457,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr17	21420783	21428109	T144096_T144096	0	+	21420783	21428109	0	6	371,59,134,220,1246,1019,	0,878,1492,1962,3542,6307,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr17	21420783	21428109	T144097_T144097	0	+	21420783	21428109	0	6	371,59,59,220,1246,1019,	0,878,1567,1962,3542,6307,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr17	21823724	21918702	T144147_T144147	0	+	21823724	21918702	0	6	1850,1664,2324,1873,1663,7049,	0,2371,78164,80967,85699,87929,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr17	21823724	21918702	T144148_T144148	0	+	21823724	21918702	0	6	1850,1664,2324,1873,1663,7002,	0,2371,78164,80967,85699,87976,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr17	21823724	21918702	T144149_T144149	0	+	21823724	21918702	0	7	1850,1664,759,567,1873,1663,7049,	0,2371,78164,79921,80967,85699,87929,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	21923987	21944267	T144169_T144169	0	-	21923987	21944267	0	3	8142,67,1857,	0,17896,18423,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	21923987	21944267	T144170_T144170	0	-	21923987	21944267	0	2	8142,1857,	0,18423,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	30761013	30762461	T145470_T145470	0	+	30761013	30762461	0	2	674,532,	0,916,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	34374028	34376287	T146000_T146000	0	+	34374028	34376287	0	2	174,1551,	0,708,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr17	34428115	34462598	T146011_T146011	0	+	34428115	34462598	0	5	3259,115,10993,14089,65,	0,3805,4502,17000,34418,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr17	34428115	34504944	T146012_T146012	0	+	34428115	34504944	0	5	3259,115,10993,116,390,	0,3805,4502,46845,76439,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	34430959	34479338	T146013_T146013	0	+	34430959	34479338	0	3	415,10993,4378,	0,1658,44001,
#Partially deleted in new
chr17	34509670	34518754	T146030_T146030	0	+	34509670	34518754	0	3	1329,343,3115,	0,5519,5969,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr17	34509670	34511488	T146028_T146028	0	+	34509670	34511488	0	1	1818,	0,
#Partially deleted in new
chr17	34509670	34518754	T146031_T146031	0	+	34509670	34518754	0	3	1329,214,2956,	0,5519,6128,
#Partially deleted in new
chr17	34509670	34518754	T146032_T146032	0	+	34509670	34518754	0	4	1329,182,214,2956,	0,5202,5519,6128,
#Partially deleted in new
chr17	34509670	34518754	T146029_T146029	0	+	34509670	34518754	0	2	1329,3882,	0,5202,
#Partially deleted in new
chr17	34510448	34518754	T146033_T146033	0	+	34510448	34518754	0	3	551,873,2956,	0,4082,5350,
#Partially deleted in new
chr17	34510448	34518754	T146034_T146034	0	+	34510448	34518754	0	2	551,4224,	0,4082,
#Partially deleted in new
chr17	34510448	34602721	T146035_T146035	0	+	34510448	34602721	0	2	551,127,	0,92146,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	34510471	34518754	T146036_T146036	0	+	34510471	34518754	0	3	528,3547,2956,	0,1385,5327,
#Partially deleted in new
chr17	34510524	34616515	T146038_T146038	0	+	34510524	34616515	0	2	475,53,	0,105938,
#Partially deleted in new
chr17	34513843	34518754	T146039_T146039	0	+	34513843	34518754	0	1	4911,	0,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	35106325	35129324	T146151_T146151	0	+	35106325	35129324	0	3	952,965,600,	0,1920,22399,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	35106325	35129324	T146152_T146152	0	+	35106325	35129324	0	3	952,965,550,	0,1920,22449,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	35107957	35129324	T146153_T146153	0	+	35107957	35129324	0	2	1253,550,	0,20817,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	35107957	35129324	T146154_T146154	0	+	35107957	35129324	0	2	1253,600,	0,20767,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	35108312	35129324	T146156_T146156	0	+	35108312	35129324	0	3	139,119,600,	0,779,20412,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	35108427	35129324	T146157_T146157	0	+	35108427	35129324	0	3	24,66,600,	0,717,20297,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	35108798	35129324	T146158_T146158	0	+	35108798	35129324	0	3	20,119,600,	0,293,19926,
#Partially deleted in new
chr17	35117032	35118531	T146160_T146160	0	+	35117032	35118531	0	2	1249,29,	0,1470,
#Partially deleted in new
chr17	35117439	35118945	T146161_T146161	0	+	35117439	35118945	0	2	503,378,	0,1128,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	35128170	35129324	T146162_T146162	0	+	35128170	35129324	0	2	411,600,	0,554,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	35128308	35129324	T146165_T146165	0	+	35128308	35129324	0	2	21,793,	0,223,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	35165350	35167624	T146169_T146169	0	-	35165350	35167624	0	2	38,1718,	0,556,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	35165525	35167624	T146172_T146172	0	-	35165525	35167624	0	2	211,1583,	0,516,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	35263994	35294156	T146191_T146191	0	-	35263994	35294156	0	3	830,5818,2054,	0,20999,28108,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	35283321	35294156	T146195_T146195	0	-	35283321	35294156	0	3	1778,308,2054,	0,7182,8781,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	35601660	35608782	T146227_T146227	0	+	35601660	35608782	0	2	38,462,	0,6660,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	35767724	35770962	T146246_T146246	0	-	35767724	35770962	0	2	363,2509,	0,729,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	36105176	36109970	T146340_T146340	0	+	36105176	36109970	0	3	228,417,1451,	0,1969,3343,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	36105176	36109970	T146341_T146341	0	+	36105176	36109970	0	3	228,789,1833,	0,1969,2961,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	36105183	36109970	T146343_T146343	0	+	36105183	36109970	0	2	2379,1451,	0,3336,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	36105183	36109970	T146342_T146342	0	+	36105183	36109970	0	2	2681,1964,	0,2823,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	36105196	36109970	T146344_T146344	0	+	36105196	36109970	0	4	208,800,269,1598,	0,1949,2824,3176,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	36128957	36131792	T146348_T146348	0	-	36128957	36131792	0	3	254,95,997,	0,1655,1838,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	36275469	36282008	T146378_T146378	0	+	36275469	36282008	0	2	6115,157,	0,6382,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr17	36283862	36292891	T146379_T146379	0	+	36283862	36292891	0	13	253,73,86,40,81,108,110,49,121,95,66,100,256,	0,1681,1916,3285,3807,4331,4768,6131,6723,7557,8036,8565,8773,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr17	36284797	36292891	T146380_T146380	0	+	36284797	36292891	0	12	819,86,40,81,108,110,49,121,95,66,100,256,	0,981,2350,2872,3396,3833,5196,5788,6622,7101,7630,7838,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr17	36286273	36292891	T146383_T146383	0	+	36286273	36292891	0	9	914,81,108,110,49,121,95,100,256,	0,1396,1920,2357,3720,4312,5146,6154,6362,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr17	36286273	36292891	T146382_T146382	0	+	36286273	36292891	0	9	914,81,108,110,49,121,95,66,464,	0,1396,1920,2357,3720,4312,5146,5625,6154,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr17	36685787	36752382	T146476_T146476	0	-	36685787	36752382	0	21	3879,147,585,1422,153,155,235,247,148,131,176,188,44,93,866,94,199,196,21,302,63,	0,14270,15322,16908,19005,19504,21603,22334,22895,23173,28675,30033,30502,30781,31911,33275,33771,34566,38671,48955,66532,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr17	36685787	36715820	T146470_T146470	0	-	36685787	36715820	0	13	3879,147,585,477,123,153,155,235,247,148,131,176,518,	0,14270,15322,16908,18207,19005,19504,21603,22334,22895,23173,28675,29515,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr17	36685787	36761995	T146479_T146479	0	-	36685787	36761995	0	24	3879,1637,477,123,153,155,235,247,148,131,176,188,44,93,866,94,199,196,24,99,302,105,63,59,	0,14270,16908,18207,19005,19504,21603,22334,22895,23173,28675,30033,30502,30781,31911,33275,33771,34566,38671,45335,48955,64647,66532,76149,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr17	36685787	36734950	T146474_T146474	0	-	36685787	36734950	0	19	3879,147,585,1422,153,155,235,247,148,131,1546,44,93,866,94,199,196,99,208,	0,14270,15322,16908,19005,19504,21603,22334,22895,23173,28675,30502,30781,31911,33275,33771,34566,45335,48955,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr17	36685787	36752382	T146477_T146477	0	-	36685787	36752382	0	23	3879,147,585,477,123,153,155,235,247,148,131,176,188,44,93,866,94,199,196,24,99,302,63,	0,14270,15322,16908,18207,19005,19504,21603,22334,22895,23173,28675,30033,30502,30781,31911,33275,33771,34566,38671,45335,48955,66532,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr17	36685787	36763366	T146487_T146487	0	-	36685787	36763366	0	22	3879,147,585,1422,153,155,235,247,148,131,176,188,44,93,866,94,199,196,24,99,302,353,	0,14270,15322,16908,19005,19504,21603,22334,22895,23173,28675,30033,30502,30781,31911,33275,33771,34566,38671,45335,48955,77226,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr17	36689666	36763424	T146510_T146510	0	-	36689666	36763424	0	22	6052,3453,147,585,1422,153,155,235,247,148,131,176,188,44,93,866,94,199,196,24,302,411,	0,6252,10391,11443,13029,15126,15625,17724,18455,19016,19294,24796,26154,26623,26902,28032,29396,29892,30687,34792,45076,73347,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr17	36689666	36735044	T146491_T146491	0	-	36689666	36735044	0	21	9705,147,585,477,123,153,155,235,247,148,131,176,188,44,93,866,94,199,196,99,302,	0,10391,11443,13029,14328,15126,15625,17724,18455,19016,19294,24796,26154,26623,26902,28032,29396,29892,30687,41456,45076,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr17	36689666	36763253	T146506_T146506	0	-	36689666	36763253	0	22	9705,147,585,1422,153,155,235,247,148,131,176,706,44,93,866,94,199,196,24,99,302,240,	0,10391,11443,13029,15126,15625,17724,18455,19016,19294,24796,25636,26623,26902,28032,29396,29892,30687,34792,41456,45076,73347,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr17	36689666	36763354	T146508_T146508	0	-	36689666	36763354	0	22	9705,147,585,477,123,153,155,235,247,148,131,176,188,44,93,866,94,199,196,21,302,341,	0,10391,11443,13029,14328,15126,15625,17724,18455,19016,19294,24796,26154,26623,26902,28032,29396,29892,30687,34792,45076,73347,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr17	36689666	36763355	T146509_T146509	0	-	36689666	36763355	0	21	9705,147,585,1422,153,155,235,247,148,131,176,188,44,93,866,94,199,196,21,302,342,	0,10391,11443,13029,15126,15625,17724,18455,19016,19294,24796,26154,26623,26902,28032,29396,29892,30687,34792,45076,73347,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr17	36689666	36763253	T146507_T146507	0	-	36689666	36763253	0	22	9705,147,585,477,123,153,155,235,247,148,131,1546,44,93,866,94,199,196,24,99,302,240,	0,10391,11443,13029,14328,15126,15625,17724,18455,19016,19294,24796,26623,26902,28032,29396,29892,30687,34792,41456,45076,73347,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr17	36689666	36763253	T146505_T146505	0	-	36689666	36763253	0	21	9705,147,585,1422,153,155,235,247,148,131,1546,44,93,866,94,199,196,24,99,302,240,	0,10391,11443,13029,15126,15625,17724,18455,19016,19294,24796,26623,26902,28032,29396,29892,30687,34792,41456,45076,73347,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr17	36689666	36762188	T146499_T146499	0	-	36689666	36762188	0	22	9705,1637,477,123,153,155,235,247,148,131,176,188,44,93,866,94,199,196,24,99,302,252,	0,10391,13029,14328,15126,15625,17724,18455,19016,19294,24796,26154,26623,26902,28032,29396,29892,30687,34792,41456,45076,72270,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	36700114	36703619	T146514_T146514	0	+	36700114	36703619	0	2	43,506,	0,2999,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr17	36700805	36763260	T146516_T146516	0	-	36700805	36763260	0	20	889,1422,153,155,235,247,148,131,176,188,44,93,866,94,199,196,24,99,302,247,	0,1890,3987,4486,6585,7316,7877,8155,13657,15015,15484,15763,16893,18257,18753,19548,23653,30317,33937,62208,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr17	36700805	36763384	T146518_T146518	0	-	36700805	36763384	0	19	889,1422,153,155,235,247,148,131,176,188,44,93,866,94,199,196,21,302,371,	0,1890,3987,4486,6585,7316,7877,8155,13657,15015,15484,15763,16893,18257,18753,19548,23653,33937,62208,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr17	36700805	36763366	T146517_T146517	0	-	36700805	36763366	0	18	889,1422,153,155,235,247,148,131,176,188,44,93,866,94,199,196,302,353,	0,1890,3987,4486,6585,7316,7877,8155,13657,15015,15484,15763,16893,18257,18753,19548,33937,62208,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr17	36700805	36763384	T146519_T146519	0	-	36700805	36763384	0	19	889,1422,153,155,235,247,148,131,176,188,44,93,866,94,199,196,99,302,371,	0,1890,3987,4486,6585,7316,7877,8155,13657,15015,15484,15763,16893,18257,18753,19548,30317,33937,62208,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	41391801	41393813	T148181_T148181	0	-	41391801	41393813	0	2	335,1304,	0,708,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr17	47865923	47927917	T150158_T150158	0	+	47865923	47927917	0	18	288,148,177,240,83,99,111,192,90,141,94,147,107,9303,159,121,97,3624,	0,3324,8188,9757,16801,22914,27241,29258,32775,33088,34640,37438,38131,38839,56367,57324,57583,58370,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr17	47865923	47927917	T150159_T150159	0	+	47865923	47927917	0	19	288,148,177,240,83,90,99,111,192,90,141,94,147,107,9303,159,121,467,3624,	0,3324,8188,9757,16801,20557,22914,27241,29258,32775,33088,34640,37438,38131,38839,56367,57324,57583,58370,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr17	47865950	47927917	T150161_T150161	0	+	47865950	47927917	0	19	261,148,177,240,83,99,111,192,90,141,94,147,107,2148,6598,121,97,149,3537,	0,3297,8161,9730,16774,22887,27214,29231,32748,33061,34613,37411,38104,38812,41337,57297,57556,57874,58430,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr17	47865950	47927917	T150162_T150162	0	+	47865950	47927917	0	20	261,148,177,240,83,90,99,111,192,90,141,94,147,107,2148,6598,121,97,149,3537,	0,3297,8161,9730,16774,20530,22887,27214,29231,32748,33061,34613,37411,38104,38812,41337,57297,57556,57874,58430,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr17	47920486	47927917	T150182_T150182	0	+	47920486	47927917	0	5	1963,121,97,149,3624,	0,2761,3020,3338,3807,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	47921191	47927917	T150183_T150183	0	+	47921191	47927917	0	4	1258,753,97,3624,	0,1424,2315,3102,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	47921191	47927917	T150185_T150185	0	+	47921191	47927917	0	4	1258,121,467,3624,	0,2056,2315,3102,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	47921191	47927917	T150186_T150186	0	+	47921191	47927917	0	4	1258,121,97,3624,	0,2056,2315,3102,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	47921191	47927917	T150184_T150184	0	+	47921191	47927917	0	4	1258,121,525,3624,	0,2056,2257,3102,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	47921534	47927917	T150189_T150189	0	+	47921534	47927917	0	3	1834,467,3624,	0,1972,2759,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr17	47921534	47927917	T150190_T150190	0	+	47921534	47927917	0	5	915,196,97,149,3624,	0,1638,1972,2290,2759,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	47921534	47927917	T150188_T150188	0	+	47921534	47927917	0	4	915,151,467,3624,	0,1713,1972,2759,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	47921534	47927917	T150187_T150187	0	+	47921534	47927917	0	4	1834,97,149,3624,	0,1972,2290,2759,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	47921987	47927917	T150191_T150191	0	+	47921987	47927917	0	4	462,121,467,3686,	0,1260,1519,2244,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	47922034	47927917	T150192_T150192	0	+	47922034	47927917	0	4	415,121,467,3674,	0,1213,1472,2209,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	47922035	47927917	T150193_T150193	0	+	47922035	47927917	0	3	414,726,3537,	0,1212,2345,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	47923001	47927917	T150194_T150194	0	+	47923001	47927917	0	3	367,467,3686,	0,505,1230,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	47923247	47927917	T150195_T150195	0	+	47923247	47927917	0	4	121,97,149,3674,	0,259,577,996,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr17	62407999	62410762	T152329_T152329	0	-	62407999	62410762	0	1	2763,	0,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	77639827	77653072	T155834_T155834	0	-	77639827	77653072	0	4	1667,152,150,353,	0,2954,7241,12892,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	77639827	77653874	T155835_T155835	0	-	77639827	77653874	0	3	1667,152,307,	0,2954,13740,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	77639827	77653072	T155833_T155833	0	-	77639827	77653072	0	3	1667,152,353,	0,2954,12892,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	77672650	77674236	T155838_T155838	0	-	77672650	77674236	0	2	626,855,	0,731,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr17	77677105	77688628	T155839_T155839	0	+	77677105	77688628	0	3	4360,1488,4772,	0,5175,6751,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr17	77679935	77688628	T155843_T155843	0	+	77679935	77688628	0	3	1513,1313,4772,	0,2345,3921,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr17	77679935	77688628	T155842_T155842	0	+	77679935	77688628	0	3	1530,1313,4772,	0,2345,3921,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr17	77681068	77688628	T155844_T155844	0	+	77681068	77688628	0	3	397,1357,4772,	0,1212,2788,
#Partially deleted in new
chr17	77705760	77707033	T155854_T155854	0	-	77705760	77707033	0	3	307,96,342,	0,598,931,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	79707726	79709049	T156618_T156618	0	+	79707726	79709049	0	2	46,803,	0,520,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	79759047	79762882	T156630_T156630	0	-	79759047	79762882	0	4	151,230,232,349,	0,311,947,3486,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	79759047	79762882	T156629_T156629	0	-	79759047	79762882	0	4	229,152,304,349,	0,389,947,3486,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	79759047	79761897	T156626_T156626	0	-	79759047	79761897	0	2	229,1903,	0,947,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	79759047	79761897	T156624_T156624	0	-	79759047	79761897	0	2	151,1903,	0,947,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	79759047	79761645	T156619_T156619	0	-	79759047	79761645	0	3	229,426,1651,	0,311,947,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	79759047	79762882	T156628_T156628	0	-	79759047	79762882	0	4	151,152,797,349,	0,389,947,3486,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	79759047	79761867	T156622_T156622	0	-	79759047	79761867	0	3	229,371,1873,	0,311,947,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	79759047	79766499	T156636_T156636	0	-	79759047	79766499	0	3	73,78,7063,	0,151,389,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	79759047	79766491	T156633_T156633	0	-	79759047	79766491	0	3	229,232,3524,	0,947,3920,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	79759047	79766499	T156634_T156634	0	-	79759047	79766499	0	4	229,152,232,3532,	0,389,947,3920,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	79759047	79766499	T156637_T156637	0	-	79759047	79766499	0	2	229,7141,	0,311,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	79759047	79761719	T156620_T156620	0	-	79759047	79761719	0	3	229,137,1725,	0,545,947,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	79759047	79766491	T156632_T156632	0	-	79759047	79766491	0	4	229,293,232,3524,	0,389,947,3920,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	79759047	79761867	T156623_T156623	0	-	79759047	79761867	0	3	229,152,1873,	0,389,947,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	79759047	79762882	T156631_T156631	0	-	79759047	79762882	0	4	229,181,232,349,	0,360,947,3486,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	79759047	79761867	T156621_T156621	0	-	79759047	79761867	0	3	229,293,1873,	0,389,947,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	79759047	79762882	T156627_T156627	0	-	79759047	79762882	0	4	229,152,232,349,	0,389,947,3486,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	79759047	79766499	T156635_T156635	0	-	79759047	79766499	0	4	151,230,232,3532,	0,311,947,3920,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	79759047	79761897	T156625_T156625	0	-	79759047	79761897	0	3	229,230,1903,	0,311,947,
#Boundary problem: need 9, got 6, diff 3, mapped 0.7
chr17	81052581	81061275	T157242_T157242	0	-	81052581	81061275	0	9	51,503,59,790,337,39,3255,907,1400,	0,198,799,939,1896,2418,2519,6290,7294,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	81052581	81063151	T157247_T157247	0	-	81052581	81063151	0	4	51,2329,1891,32,	0,198,3236,10538,
#Partially deleted in new
chr17	81052581	81061275	T157243_T157243	0	-	81052581	81061275	0	5	51,2259,341,1046,2826,	0,198,2519,4728,5868,
#Boundary problem: need 4, got 1, diff 3, mapped 0.2
chr17	81052581	81058556	T157239_T157239	0	-	81052581	81058556	0	4	51,2259,1863,24,	0,198,2519,5951,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr17	81052581	81061275	T157246_T157246	0	-	81052581	81061275	0	6	51,1460,749,1349,907,1400,	0,198,1944,4042,6290,7294,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	81052581	81061275	T157244_T157244	0	-	81052581	81061275	0	3	51,5193,2282,	0,198,6412,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	81052581	81061275	T157241_T157241	0	-	81052581	81061275	0	3	51,5665,2086,	0,198,6608,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	81052581	81057523	T157238_T157238	0	-	81052581	81057523	0	3	51,790,1110,	0,198,3832,
#Boundary problem: need 6, got 2, diff 4, mapped 0.3
chr17	81052581	81061275	T157240_T157240	0	-	81052581	81061275	0	6	51,701,702,561,3255,2826,	0,198,1027,1896,2519,5868,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr17	81052815	81061235	T157250_T157250	0	-	81052815	81061235	0	4	2293,2538,965,1349,	0,3002,6056,7071,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr17	81052815	81061275	T157252_T157252	0	-	81052815	81061275	0	5	1321,3830,334,895,1400,	0,1710,5634,6068,7060,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr17	81052815	81057602	T157249_T157249	0	-	81052815	81057602	0	2	1456,3077,	0,1710,
#Boundary problem: need 4, got 1, diff 3, mapped 0.2
chr17	81052815	81061275	T157253_T157253	0	-	81052815	81061275	0	4	1422,3830,1329,1439,	0,1710,5634,7021,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr17	81052815	81061275	T157251_T157251	0	-	81052815	81061275	0	3	1303,3830,2826,	0,1710,5634,
#Partially deleted in new
chr17	81058737	81060357	T157255_T157255	0	-	81058737	81060357	0	3	166,874,45,	0,241,1575,
#Partially deleted in new
chr17	81058737	81060032	T157254_T157254	0	-	81058737	81060032	0	2	834,133,	0,1162,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr18	35250356	35323815	T161029_T161029	0	+	35250356	35323815	0	4	139,224,84,1158,	0,60770,63292,72301,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr18	35250356	35323815	T161031_T161031	0	+	35250356	35323815	0	6	139,72,224,84,116,1158,	0,55450,60770,63292,70873,72301,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr18	35250356	35323815	T161030_T161030	0	+	35250356	35323815	0	4	139,224,116,1158,	0,60770,70873,72301,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr18	35250378	35323815	T161046_T161046	0	+	35250378	35323815	0	6	117,76,224,87,116,1158,	0,52982,60748,63267,70851,72279,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr18	52040535	52059138	T162439_T162439	0	+	52040535	52059138	0	3	302,132,155,	0,11267,18448,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr18	52040605	52059138	T162440_T162440	0	+	52040605	52059138	0	2	232,155,	0,18378,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr18	52051505	52059138	T162441_T162441	0	+	52051505	52059138	0	3	189,193,155,	0,236,7478,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr18	52051505	52059138	T162442_T162442	0	+	52051505	52059138	0	3	189,132,155,	0,297,7478,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr18	66892197	66913579	T163670_T163670	0	+	66892197	66913579	0	2	107,6545,	0,14837,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr18	72832614	72843331	T164178_T164178	0	+	72832614	72843331	0	3	3617,1649,703,	0,7574,10014,
#Partially deleted in new
chr18	77830914	77832655	T165026_T165026	0	-	77830914	77832655	0	2	319,1277,	0,464,
#Partially deleted in new
chr18	77830914	77832655	T165025_T165025	0	-	77830914	77832655	0	2	319,1349,	0,392,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr18	77831378	77832655	T165027_T165027	0	-	77831378	77832655	0	2	109,878,	0,399,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	8665978	8669253	T167664_T167664	0	+	8665978	8669253	0	2	1864,628,	0,2647,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	8737205	8794017	T167666_T167666	0	+	8737205	8794017	0	4	7995,52,98,7432,	0,47180,48988,49380,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	8737205	8794017	T167665_T167665	0	+	8737205	8794017	0	4	7995,50,98,7433,	0,47180,48988,49379,
#Partially deleted in new
chr19	8740077	8794017	T167667_T167667	0	+	8740077	8794017	0	5	117,150,97,50,7824,	0,1848,5026,44308,46116,
#Boundary problem: need 4, got 1, diff 3, mapped 0.2
chr19	8762622	8766147	T167669_T167669	0	-	8762622	8766147	0	4	3148,35,36,108,	0,3202,3291,3417,
#Boundary problem: need 2, got 0, diff 2, mapped 0.0
chr19	8762622	8766781	T167672_T167672	0	-	8762622	8766781	0	2	3166,922,	0,3237,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	8762622	8766184	T167670_T167670	0	-	8762622	8766184	0	3	3037,18,145,	0,3184,3417,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	8762622	8766781	T167675_T167675	0	-	8762622	8766781	0	3	3095,18,742,	0,3166,3417,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	8762622	8766781	T167673_T167673	0	-	8762622	8766781	0	3	3037,125,760,	0,3184,3399,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	8762622	8766205	T167671_T167671	0	-	8762622	8766205	0	3	3130,17,256,	0,3202,3327,
#Partially deleted in new
chr19	8764245	8794017	T167677_T167677	0	+	8764245	8794017	0	3	823,50,7432,	0,20140,22340,
#Partially deleted in new
chr19	8764245	8794017	T167676_T167676	0	+	8764245	8794017	0	4	823,50,98,7432,	0,20140,21948,22340,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	8764245	8794017	T167678_T167678	0	+	8764245	8794017	0	4	823,50,98,7609,	0,20140,21948,22163,
#Partially deleted in new
chr19	8764292	8794017	T167679_T167679	0	+	8764292	8794017	0	4	776,50,99,7432,	0,20093,21900,22293,
#Partially deleted in new
chr19	8771347	8775525	T167680_T167680	0	+	8771347	8775525	0	2	1747,2343,	0,1835,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr19	23945647	23973576	T171967_T171967	0	+	23945647	23973576	0	7	289,98,374,175,128,275,3630,	0,9445,13076,14819,19526,23928,24299,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	23969575	23973576	T171982_T171982	0	+	23969575	23973576	0	2	270,3630,	0,371,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	23970088	23972642	T171984_T171984	0	-	23970088	23972642	0	2	26,2194,	0,360,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	35838184	35848511	T173619_T173619	0	-	35838184	35848511	0	2	341,4875,	0,5452,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	35838184	35849470	T173620_T173620	0	-	35838184	35849470	0	2	341,5791,	0,5495,
#Partially deleted in new
chr19	40353960	40476875	T175382_T175382	0	-	40353960	40476875	0	40	176,272,384,200,574,572,544,617,574,338,142,200,595,593,544,617,574,338,142,200,595,593,544,617,574,338,142,200,595,593,568,605,571,350,1248,57,155,121,175,89,	0,300,3416,6895,8757,9903,12067,13337,14342,16234,19984,22352,22670,26158,28322,29590,30601,32485,35691,38037,38355,41843,44006,45278,46289,48173,51958,53975,54293,57677,65636,67131,70018,76329,79005,86510,86925,96146,101956,122826,
#Partially deleted in new
chr19	40353960	40440542	T175381_T175381	0	-	40353960	40440542	0	21	176,272,384,200,574,572,544,617,76,498,338,142,200,595,593,568,605,571,350,1248,72,	0,300,3416,6895,8757,9903,12067,13337,14342,46365,48173,51958,53975,54293,57677,65636,67131,70018,76329,79005,86510,
#Partially deleted in new
chr19	40353960	40440542	T175380_T175380	0	-	40353960	40440542	0	29	176,272,384,200,574,572,544,617,574,338,142,200,595,593,544,617,574,338,81,61,200,595,593,568,605,571,350,1248,72,	0,300,3416,6895,8757,9903,12067,13337,14342,16234,19984,22352,22670,26158,28322,29590,30601,32485,35691,52039,53975,54293,57677,65636,67131,70018,76329,79005,86510,
#Partially deleted in new
chr19	40353960	40440527	T175379_T175379	0	-	40353960	40440527	0	29	176,272,384,200,574,572,544,617,574,338,142,200,595,593,544,617,574,338,24,118,200,595,593,568,605,571,350,1248,57,	0,300,3416,6895,8757,9903,12067,13337,14342,16234,19984,22352,22670,26158,28322,29590,30601,32485,35691,51982,53975,54293,57677,65636,67131,70018,76329,79005,86510,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	41959783	42007255	T175922_T175922	0	-	41959783	42007255	0	6	849,127,204,126,204,454,	0,2482,25205,41426,46710,47018,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	41959783	41963205	T175910_T175910	0	-	41959783	41963205	0	2	2609,685,	0,2737,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	41959783	42007255	T175921_T175921	0	-	41959783	42007255	0	5	849,127,204,204,454,	0,2482,25205,46710,47018,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	41959783	42007255	T175920_T175920	0	-	41959783	42007255	0	5	863,127,204,204,454,	0,2482,25205,46710,47018,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	41959783	42007262	T175925_T175925	0	-	41959783	42007262	0	5	2609,204,126,204,461,	0,25205,41426,46710,47018,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	41959783	42007262	T175926_T175926	0	-	41959783	42007262	0	4	2609,204,204,461,	0,25205,46710,47018,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	41959783	42007255	T175923_T175923	0	-	41959783	42007255	0	6	863,127,204,126,204,454,	0,2482,25205,41426,46710,47018,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	41959783	42007255	T175924_T175924	0	-	41959783	42007255	0	6	863,127,204,158,204,454,	0,2482,25205,25503,46710,47018,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	42022663	42026639	T175930_T175930	0	+	42022663	42026639	0	2	2887,894,	0,3082,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42035445	42047295	T175933_T175933	0	+	42035445	42047295	0	4	2920,56,167,922,	0,6644,8013,10928,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42036381	42047295	T175936_T175936	0	+	42036381	42047295	0	4	5582,70,663,922,	0,5694,6581,9992,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42036381	42047295	T175937_T175937	0	+	42036381	42047295	0	4	5582,70,721,922,	0,5694,6523,9992,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42036381	42047295	T175939_T175939	0	+	42036381	42047295	0	4	5582,70,666,922,	0,5694,6578,9992,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42036381	42047295	T175943_T175943	0	+	42036381	42047295	0	4	5582,56,167,922,	0,5708,7077,9992,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	42036381	42047295	T175935_T175935	0	+	42036381	42047295	0	3	5582,1550,922,	0,5694,9992,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42036381	42047295	T175940_T175940	0	+	42036381	42047295	0	4	1984,56,666,922,	0,5708,6578,9992,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr19	42036381	42047295	T175934_T175934	0	+	42036381	42047295	0	5	1717,3751,56,666,922,	0,1831,5708,6578,9992,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	42036381	42047295	T175941_T175941	0	+	42036381	42047295	0	3	1984,1550,922,	0,5694,9992,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	42036381	42047295	T175938_T175938	0	+	42036381	42047295	0	3	5582,1536,922,	0,5708,9992,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42036381	42047295	T175942_T175942	0	+	42036381	42047295	0	4	5582,70,167,922,	0,5694,7077,9992,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr19	42036630	42047295	T175953_T175953	0	+	42036630	42047295	0	5	1382,3734,70,666,922,	0,1599,5445,6329,9743,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42036630	42047295	T175954_T175954	0	+	42036630	42047295	0	4	1305,56,167,922,	0,5459,6828,9743,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42036630	42047295	T175951_T175951	0	+	42036630	42047295	0	4	1735,70,167,922,	0,5445,6828,9743,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr19	42036630	42047295	T175952_T175952	0	+	42036630	42047295	0	4	1382,3734,1550,922,	0,1599,5445,9743,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr19	42036630	42047295	T175955_T175955	0	+	42036630	42047295	0	4	1382,3734,1536,922,	0,1599,5459,9743,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	42038106	42041768	T175958_T175958	0	-	42038106	42041768	0	2	427,3158,	0,504,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	42055678	42073181	T175964_T175964	0	+	42055678	42073181	0	6	242,1359,1394,876,375,1256,	0,827,4397,5901,15357,16247,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	42055747	42094727	T175965_T175965	0	+	42055747	42094727	0	9	173,1359,375,360,276,94,53,32,1911,	0,758,15288,27804,29958,34955,36048,36445,37069,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	42055752	42094727	T175967_T175967	0	+	42055752	42094727	0	12	168,1937,41,149,876,375,360,276,94,53,32,1911,	0,175,4323,5568,5827,15283,27799,29953,34950,36043,36440,37064,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr19	42055752	42073181	T175966_T175966	0	+	42055752	42073181	0	7	168,1937,41,149,876,375,1256,	0,175,4323,5568,5827,15283,16173,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	42055789	42094727	T175971_T175971	0	+	42055789	42094727	0	9	131,1359,375,360,359,94,53,32,1911,	0,716,15246,27762,29833,34913,36006,36403,37027,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	42055789	42073181	T175970_T175970	0	+	42055789	42073181	0	6	2075,41,388,876,375,1369,	0,4286,5292,5790,15246,16023,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	42055824	42094727	T175981_T175981	0	+	42055824	42094727	0	11	96,1359,149,876,375,360,359,94,53,32,2221,	0,681,5496,5755,15211,27727,29798,34878,35971,36368,36682,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	42055824	42094727	T175983_T175983	0	+	42055824	42094727	0	12	96,1359,41,149,876,375,360,276,94,53,32,1911,	0,681,4251,5496,5755,15211,27727,29881,34878,35971,36368,36992,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	42055824	42073181	T175975_T175975	0	+	42055824	42073181	0	6	96,1359,149,876,375,1260,	0,681,5496,5755,15211,16097,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42055824	42073181	T175977_T175977	0	+	42055824	42073181	0	4	96,1359,375,1256,	0,681,15211,16101,
#Boundary problem: need 7, got 5, diff 2, mapped 0.7
chr19	42055824	42073181	T175976_T175976	0	+	42055824	42073181	0	7	96,1359,41,149,876,375,1400,	0,681,4251,5496,5755,15211,15957,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr19	42055824	42073181	T175978_T175978	0	+	42055824	42073181	0	7	96,1359,41,149,876,375,1256,	0,681,4251,5496,5755,15211,16101,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	42055824	42094727	T175979_T175979	0	+	42055824	42094727	0	9	96,1359,375,360,276,97,53,32,1911,	0,681,15211,27727,29881,34875,35971,36368,36992,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	42055824	42073181	T175974_T175974	0	+	42055824	42073181	0	4	96,1359,375,1260,	0,681,15211,16097,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	42055824	42094727	T175982_T175982	0	+	42055824	42094727	0	12	96,1359,41,149,876,375,360,359,97,53,32,1911,	0,681,4251,5496,5755,15211,27727,29798,34875,35971,36368,36992,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	42055824	42094727	T175980_T175980	0	+	42055824	42094727	0	12	96,1359,41,149,876,375,360,359,94,53,32,1911,	0,681,4251,5496,5755,15211,27727,29798,34878,35971,36368,36992,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr19	42055849	42073181	T175990_T175990	0	+	42055849	42073181	0	7	71,1937,41,149,876,375,1260,	0,78,4226,5471,5730,15186,16072,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr19	42082302	42125391	T176002_T176002	0	+	42082302	42125391	0	8	388,360,276,94,53,32,4117,4661,	0,1249,3403,8400,9493,9890,10514,38428,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr19	42082302	42125391	T176004_T176004	0	+	42082302	42125391	0	8	388,360,276,97,53,32,4117,4661,	0,1249,3403,8397,9493,9890,10514,38428,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr19	42082302	42125391	T176003_T176003	0	+	42082302	42125391	0	8	388,360,276,94,53,32,4427,4661,	0,1249,3403,8400,9493,9890,10204,38428,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr19	42300383	42331591	T176054_T176054	0	+	42300383	42331591	0	7	290,360,1820,53,32,6467,6964,	0,1137,10765,13619,13977,14486,24244,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr19	42300383	42331591	T176052_T176052	0	+	42300383	42331591	0	8	290,360,1820,53,32,66,6127,6964,	0,1137,10765,13619,13977,14486,14826,24244,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr19	42300383	42316527	T176051_T176051	0	+	42300383	42316527	0	8	290,360,507,115,53,32,66,1318,	0,1137,10765,12470,13619,13977,14486,14826,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr19	42300383	42331591	T176053_T176053	0	+	42300383	42331591	0	8	290,360,118,53,32,66,6127,6964,	0,1137,12467,13619,13977,14486,14826,24244,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	42300402	42316527	T176055_T176055	0	+	42300402	42316527	0	6	271,360,1820,32,66,1318,	0,1118,10746,13958,14467,14807,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	42301156	42331591	T176056_T176056	0	+	42301156	42331591	0	6	49,360,1820,32,6467,6964,	0,364,9992,13204,13713,23471,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	42301808	42306351	T176058_T176058	0	-	42301808	42306351	0	2	1201,2470,	0,2073,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	42312853	42316527	T176060_T176060	0	+	42312853	42316527	0	5	115,53,32,66,1266,	0,1149,1507,2016,2408,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	43856867	43874756	T176535_T176535	0	+	43856867	43874756	0	11	254,79,141,186,123,117,141,186,135,6927,175,	0,972,1137,1491,2945,3276,7549,8427,8729,9372,17714,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	43857497	43889459	T176536_T176536	0	+	43857497	43889459	0	10	421,141,186,123,117,141,186,135,17997,2400,	0,507,861,2315,2646,6919,7797,8099,8742,29562,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	43857789	43871238	T176537_T176537	0	+	43857789	43871238	0	10	129,141,186,123,117,141,186,135,141,3505,	0,215,569,2023,2354,6627,7505,7807,8450,9944,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	45020338	45023320	T176888_T176888	0	+	45020338	45023320	0	2	549,2121,	0,861,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	45073790	45077385	T176894_T176894	0	+	45073790	45077385	0	2	1204,2030,	0,1565,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	45099978	45111494	T176897_T176897	0	+	45099978	45111494	0	3	276,2132,3703,	0,394,7813,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	45099978	45105499	T176896_T176896	0	+	45099978	45105499	0	2	276,5127,	0,394,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	46603088	46628131	T177556_T177556	0	-	46603088	46628131	0	6	2048,1858,1578,271,54,250,	0,7407,18948,24054,24436,24793,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	46603088	46628128	T177555_T177555	0	-	46603088	46628128	0	6	2048,1858,2611,271,54,247,	0,7407,18948,24054,24436,24793,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	46603088	46622915	T177554_T177554	0	-	46603088	46622915	0	4	2048,1585,155,879,	0,7426,9110,18948,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	46603088	46628131	T177558_T177558	0	-	46603088	46628131	0	9	2048,1585,155,105,205,1578,158,54,250,	0,7426,9110,13434,15985,18948,24054,24436,24793,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr19	46603088	46628131	T177559_T177559	0	-	46603088	46628131	0	7	2048,1858,205,3227,271,54,250,	0,7407,15985,18473,24054,24436,24793,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr19	46603088	46628131	T177557_T177557	0	-	46603088	46628131	0	7	2048,1858,205,2053,271,54,250,	0,7407,15985,18473,24054,24436,24793,
#Partially deleted in new
chr19	54636511	54637742	T180678_T180678	0	-	54636511	54637742	0	3	866,102,23,	0,955,1208,
#Partially deleted in new
chr19	54636511	54637754	T180679_T180679	0	-	54636511	54637754	0	2	984,35,	0,1208,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	54636511	54637735	T180677_T180677	0	-	54636511	54637735	0	2	673,47,	0,1177,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	54731922	54740512	T180750_T180750	0	+	54731922	54740512	0	2	1526,6787,	0,1803,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	54841588	54844406	T180795_T180795	0	+	54841588	54844406	0	2	1439,1110,	0,1708,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	54862626	54865341	T180811_T180811	0	+	54862626	54865341	0	2	1472,1172,	0,1543,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	54948811	54957213	T180847_T180847	0	-	54948811	54957213	0	2	2789,3951,	0,4451,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	54948811	54960138	T180850_T180850	0	-	54948811	54960138	0	3	2789,3095,796,	0,4451,10531,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	55024748	55039357	T180880_T180880	0	-	55024748	55039357	0	5	1580,242,205,492,145,	0,2502,12991,13345,14464,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	55024748	55038340	T180879_T180879	0	-	55024748	55038340	0	3	1580,205,247,	0,12991,13345,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	55024748	55038340	T180878_T180878	0	-	55024748	55038340	0	4	1580,242,115,247,	0,2502,13081,13345,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr19	55235666	55237391	T180999_T180999	0	-	55235666	55237391	0	2	440,784,	0,941,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr19	58524724	58595293	T182260_T182260	0	+	58524724	58595293	0	13	16206,3670,42,479,95,11823,5882,67,127,96,3974,1839,10658,	0,17135,22613,24371,27093,27449,40072,46612,48223,50089,53348,58020,59911,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	58524724	58595293	T182259_T182259	0	+	58524724	58595293	0	12	16206,3670,42,479,95,11823,5882,127,96,3938,1839,10658,	0,17135,22613,24371,27093,27449,40072,48223,50089,53384,58020,59911,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	58524724	58595293	T182258_T182258	0	+	58524724	58595293	0	12	16206,3670,42,479,95,11823,5882,127,96,3974,1839,10658,	0,17135,22613,24371,27093,27449,40072,48223,50089,53348,58020,59911,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	58524724	58595293	T182265_T182265	0	+	58524724	58595293	0	12	16206,3670,42,479,95,11823,5882,67,127,96,3980,12549,	0,17135,22613,24371,27093,27449,40072,46612,48223,50089,53348,58020,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	58524724	58595293	T182262_T182262	0	+	58524724	58595293	0	11	16206,3670,42,479,95,11823,5882,67,127,96,17221,	0,17135,22613,24371,27093,27449,40072,46612,48223,50089,53348,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr19	58524724	58596645	T182266_T182266	0	+	58524724	58596645	0	15	16206,3670,42,479,95,11823,5882,67,127,96,8050,1774,4954,36,46,	0,17135,22613,24371,27093,27449,40072,46612,48223,50089,53348,62236,65648,71025,71875,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	58524724	58595293	T182261_T182261	0	+	58524724	58595293	0	10	16206,3670,42,479,95,11823,5882,127,96,17221,	0,17135,22613,24371,27093,27449,40072,48223,50089,53348,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	58545353	58595293	T182275_T182275	0	+	58545353	58595293	0	11	176,572,687,95,139,6607,127,96,8050,1774,3973,	0,1984,3534,6464,18504,19443,27594,29460,32719,41607,45967,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	58545353	58595293	T182285_T182285	0	+	58545353	58595293	0	10	176,1490,687,95,139,5882,430,127,96,17185,	0,1984,3534,6464,18504,19443,25983,27594,29460,32755,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	58545353	58595293	T182279_T182279	0	+	58545353	58595293	0	10	176,1490,687,95,139,5882,67,127,96,17221,	0,1984,3534,6464,18504,19443,25983,27594,29460,32719,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	58545353	58595293	T182278_T182278	0	+	58545353	58595293	0	9	176,1116,479,95,139,5882,127,96,17185,	0,1984,3742,6464,18504,19443,27594,29460,32755,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	58545353	58595591	T182296_T182296	0	+	58545353	58595591	0	11	176,572,687,95,139,5882,127,11309,1774,3003,5,	0,1984,3534,6464,18504,19443,27594,29460,41607,45019,50233,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr19	58545353	58596645	T182297_T182297	0	+	58545353	58596645	0	13	176,524,1174,95,139,5882,127,96,8014,1774,4954,36,46,	0,1984,3047,6464,18504,19443,27594,29460,32755,41607,45019,50396,51246,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	58545353	58595293	T182276_T182276	0	+	58545353	58595293	0	9	176,1490,687,95,139,5882,67,127,20480,	0,1984,3534,6464,18504,19443,25983,27594,29460,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	58545353	58595293	T182284_T182284	0	+	58545353	58595293	0	12	176,1490,687,95,139,5882,67,127,96,3579,1839,10658,	0,1984,3534,6464,18504,19443,25983,27594,29460,33114,37391,39282,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	58545353	58595293	T182289_T182289	0	+	58545353	58595293	0	10	176,1490,687,95,139,5882,67,127,96,17185,	0,1984,3534,6464,18504,19443,25983,27594,29460,32755,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	58545353	58595293	T182292_T182292	0	+	58545353	58595293	0	9	176,1490,687,95,139,5882,127,96,17221,	0,1984,3534,6464,18504,19443,27594,29460,32719,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	58545353	58595293	T182290_T182290	0	+	58545353	58595293	0	10	176,1490,1110,95,139,5882,67,127,96,17221,	0,1984,3534,6464,18504,19443,25983,27594,29460,32719,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	58545353	58595293	T182280_T182280	0	+	58545353	58595293	0	10	176,1490,687,95,139,5882,62,127,96,17221,	0,1984,3534,6464,18504,19443,25988,27594,29460,32719,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	58545353	58595293	T182295_T182295	0	+	58545353	58595293	0	12	176,1490,687,95,139,5882,67,127,96,3938,1839,10658,	0,1984,3534,6464,18504,19443,25983,27594,29460,32755,37391,39282,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	58545353	58595293	T182286_T182286	0	+	58545353	58595293	0	11	176,572,687,95,139,5882,67,127,96,3938,12556,	0,1984,3534,6464,18504,19443,25983,27594,29460,32755,37384,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	58545353	58595293	T182282_T182282	0	+	58545353	58595293	0	10	176,1490,687,95,139,6421,67,127,96,17221,	0,1984,3534,6464,18504,19443,25983,27594,29460,32719,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr19	58545353	58595293	T182281_T182281	0	+	58545353	58595293	0	8	176,1490,687,95,139,5882,127,20480,	0,1984,3534,6464,18504,19443,27594,29460,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	58545353	58595293	T182288_T182288	0	+	58545353	58595293	0	10	176,1490,687,95,139,5882,127,96,863,15518,	0,1984,3534,6464,18504,19443,27594,29460,32719,34422,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	58545353	58595293	T182287_T182287	0	+	58545353	58595293	0	10	176,1490,687,95,139,5882,62,127,96,10034,	0,1984,3534,6464,18504,19443,25988,27594,29460,39906,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr19	58545353	58595293	T182277_T182277	0	+	58545353	58595293	0	11	176,572,687,95,139,5882,67,127,11309,1774,3973,	0,1984,3534,6464,18504,19443,25983,27594,29460,41607,45967,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr19	58545353	58595293	T182291_T182291	0	+	58545353	58595293	0	10	176,1490,1110,95,139,5882,67,127,96,17185,	0,1984,3534,6464,18504,19443,25983,27594,29460,32755,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	58545353	58595293	T182283_T182283	0	+	58545353	58595293	0	9	176,1490,687,95,139,5882,127,96,17185,	0,1984,3534,6464,18504,19443,27594,29460,32755,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr19	58547043	58595293	T182298_T182298	0	+	58547043	58595293	0	8	818,1174,95,139,5882,127,96,17185,	0,1357,4774,16814,17753,25904,27770,31065,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr19	58547043	58596645	T182299_T182299	0	+	58547043	58596645	0	12	2531,95,139,5882,67,127,96,8014,1774,4954,36,46,	0,4774,16814,17753,24293,25904,27770,31065,39917,43329,48706,49556,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	58561785	58595293	T182302_T182302	0	+	58561785	58595293	0	5	2211,6970,127,96,17185,	0,3011,11162,13028,16323,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr19	58561785	58595293	T182301_T182301	0	+	58561785	58595293	0	4	2211,6970,127,20480,	0,3011,11162,13028,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr19	58561785	58595293	T182303_T182303	0	+	58561785	58595293	0	5	2211,6970,127,96,17221,	0,3011,11162,13028,16287,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	58561785	58595293	T182300_T182300	0	+	58561785	58595293	0	6	2211,6607,127,96,3944,12549,	0,3011,11162,13028,16323,20959,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr19	58562028	58596645	T182304_T182304	0	+	58562028	58596645	0	9	1968,5882,127,96,8050,1774,4954,36,46,	0,2768,10919,12785,16044,24932,28344,33721,34571,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr19	58570678	58595293	T182308_T182308	0	+	58570678	58595293	0	6	725,127,96,8014,1774,3973,	0,2269,4135,7430,16282,20642,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr19	58570678	58595293	T182309_T182309	0	+	58570678	58595293	0	3	725,127,20480,	0,2269,4135,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	833777	849742	T183009_T183009	0	+	833777	849742	0	4	11510,31,12,3936,	0,11748,11874,12029,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr2	833777	849742	T183010_T183010	0	+	833777	849742	0	5	11558,31,12,14,3828,	0,11748,11874,12029,12137,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	838954	849742	T183011_T183011	0	+	838954	849742	0	2	6618,3932,	0,6856,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	843417	849742	T183014_T183014	0	+	843417	849742	0	4	1870,47,1238,2007,	0,2108,2393,4318,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr2	843417	849742	T183013_T183013	0	+	843417	849742	0	5	1870,31,12,1242,2007,	0,2108,2234,2389,4318,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	844160	849742	T183019_T183019	0	+	844160	849742	0	3	1412,1238,2007,	0,1650,3575,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr2	844184	864631	T183021_T183021	0	-	844184	864631	0	5	5373,239,200,300,264,	0,5473,6717,19619,20183,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	844184	867404	T183023_T183023	0	-	844184	867404	0	4	5712,200,344,3125,	0,6717,19619,20095,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr2	844184	867404	T183022_T183022	0	-	844184	867404	0	5	5373,239,200,300,3125,	0,5473,6717,19619,20095,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr2	844184	881218	T183025_T183025	0	-	844184	881218	0	5	5373,446,200,300,16939,	0,5473,6717,19619,20095,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	844184	878623	T183024_T183024	0	-	844184	878623	0	4	5373,239,300,14344,	0,5473,19619,20095,
#Partially deleted in new
chr2	1226505	1235645	T183091_T183091	0	-	1226505	1235645	0	3	1253,379,38,	0,1816,9102,
#Partially deleted in new
chr2	1226505	1232307	T183087_T183087	0	-	1226505	1232307	0	4	1253,192,863,1238,	0,2003,2398,4564,
#Partially deleted in new
chr2	1226505	1228072	T183083_T183083	0	-	1226505	1228072	0	2	1151,351,	0,1216,
#Partially deleted in new
chr2	1226505	1235645	T183090_T183090	0	-	1226505	1235645	0	3	1331,379,38,	0,1816,9102,
#Partially deleted in new
chr2	1226505	1235645	T183089_T183089	0	-	1226505	1235645	0	4	645,214,192,38,	0,1039,2003,9102,
#Partially deleted in new
chr2	1226505	1235645	T183092_T183092	0	-	1226505	1235645	0	3	645,1156,38,	0,1039,9102,
#Partially deleted in new
chr2	1226505	1230329	T183085_T183085	0	-	1226505	1230329	0	3	1331,192,1426,	0,2003,2398,
#Partially deleted in new
chr2	1226505	1235645	T183088_T183088	0	-	1226505	1235645	0	4	645,292,379,38,	0,1039,1816,9102,
#Partially deleted in new
chr2	1226505	1232307	T183086_T183086	0	-	1226505	1232307	0	3	1253,192,1238,	0,2003,4564,
#Partially deleted in new
chr2	1226505	1230329	T183084_T183084	0	-	1226505	1230329	0	2	1331,1821,	0,2003,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	10142391	10151152	T184335_T184335	0	-	10142391	10151152	0	3	887,4851,1633,	0,2157,7128,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	10142391	10161564	T184340_T184340	0	-	10142391	10161564	0	3	887,1503,12045,	0,2157,7128,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	10142391	10151152	T184334_T184334	0	-	10142391	10151152	0	3	887,4356,1633,	0,2157,7128,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	10142391	10161564	T184337_T184337	0	-	10142391	10161564	0	2	7008,12045,	0,7128,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	10142391	10161564	T184338_T184338	0	-	10142391	10161564	0	2	3660,12045,	0,7128,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	10282326	10301721	T184383_T184383	0	-	10282326	10301721	0	3	7834,5856,707,	0,12658,18688,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr2	31747552	31808067	T187322_T187322	0	-	31747552	31808067	0	5	3780,151,102,164,2378,	0,6824,8888,11120,58137,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr2	73153693	73340060	T191738_T191738	0	-	73153693	73340060	0	23	2659,249,884,3631,74,118,86,116,91,66,57,54,26,55,27,78,69,4120,190,1879,700,437,586,	0,10572,12255,13709,18461,34566,41883,45005,61693,72384,73866,74960,93674,95957,96623,114289,131963,145039,149427,153085,161484,162313,185781,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr2	73153693	73340060	T191737_T191737	0	-	73153693	73340060	0	23	2659,249,884,3631,74,118,86,116,91,66,57,54,26,55,27,78,69,4120,190,2013,700,437,586,	0,10572,12255,13709,18461,34566,41883,45005,61693,72384,73866,74960,93674,95957,96623,114289,131963,145039,149427,153085,161484,162313,185781,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr2	73153693	73340983	T191744_T191744	0	-	73153693	73340983	0	22	2659,249,884,4826,118,86,116,91,66,57,54,26,55,27,78,69,4120,190,2013,700,437,1509,	0,10572,12255,13709,34566,41883,45005,61693,72384,73866,74960,93674,95957,96623,114289,131963,145039,149427,153085,161484,162313,185781,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr2	73153693	73340067	T191739_T191739	0	-	73153693	73340067	0	23	2659,249,884,3631,74,118,86,116,91,66,57,54,26,55,27,78,69,4120,190,1695,700,437,593,	0,10572,12255,13709,18461,34566,41883,45005,61693,72384,73866,74960,93674,95957,96623,114289,131963,145039,149427,153085,161484,162313,185781,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr2	73153693	73340081	T191742_T191742	0	-	73153693	73340081	0	22	2659,249,884,4826,86,116,91,66,57,54,26,55,27,78,55,69,4120,190,2013,700,437,607,	0,10572,12255,13709,41883,45005,61693,72384,73866,74960,93674,95957,96623,114289,115042,131963,145039,149427,153085,161484,162313,185781,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr2	73153693	73340983	T191746_T191746	0	-	73153693	73340983	0	21	2659,249,884,4826,118,86,116,91,66,57,54,26,55,27,78,69,4120,190,700,437,1509,	0,10572,12255,13709,34566,41883,45005,61693,72384,73866,74960,93674,95957,96623,114289,131963,145039,149427,161484,162313,185781,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr2	73153693	73340067	T191740_T191740	0	-	73153693	73340067	0	22	2659,249,884,4826,124,118,86,91,66,57,54,26,55,27,78,55,69,4120,190,700,437,593,	0,10572,12255,13709,30415,34566,41883,61693,72384,73866,74960,93674,95957,96623,114289,115042,131963,145039,149427,161484,162313,185781,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr2	73153693	73340983	T191745_T191745	0	-	73153693	73340983	0	22	2659,249,884,4826,118,86,116,91,66,57,54,26,55,27,78,69,4120,190,1695,700,437,1509,	0,10572,12255,13709,34566,41883,45005,61693,72384,73866,74960,93674,95957,96623,114289,131963,145039,149427,153085,161484,162313,185781,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr2	73153693	73340081	T191743_T191743	0	-	73153693	73340081	0	22	2659,249,884,4826,86,116,68,66,57,54,26,55,27,78,55,69,4120,190,1879,700,437,607,	0,10572,12255,13709,41883,45005,61716,72384,73866,74960,93674,95957,96623,114289,115042,131963,145039,149427,153085,161484,162313,185781,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr2	73153693	73340983	T191747_T191747	0	-	73153693	73340983	0	21	2659,249,884,4826,118,86,91,66,57,54,26,55,27,78,69,4120,190,1695,700,437,1509,	0,10572,12255,13709,34566,41883,61693,72384,73866,74960,93674,95957,96623,114289,131963,145039,149427,153085,161484,162313,185781,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr2	73168891	73316754	T191754_T191754	0	-	73168891	73316754	0	19	3337,118,86,116,91,66,57,54,26,55,27,78,69,4120,190,1695,700,437,21,	0,19368,26685,29807,46495,57186,58668,59762,78476,80759,81425,99091,116765,129841,134229,137887,146286,147115,147842,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	81107267	81148594	T192636_T192636	0	+	81107267	81148594	0	3	31,161,2093,	0,14999,39234,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	81107270	81148594	T192637_T192637	0	+	81107270	81148594	0	3	28,182,2093,	0,2137,39231,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	89152685	89165767	T193662_T193662	0	-	89152685	89165767	0	4	1082,2506,198,637,	0,2005,8712,12445,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	89152685	89165767	T193660_T193660	0	-	89152685	89165767	0	4	1044,2506,1198,637,	0,2005,7712,12445,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	89152685	89165725	T193659_T193659	0	-	89152685	89165725	0	4	1082,2506,559,595,	0,2005,8351,12445,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	89152685	89165767	T193663_T193663	0	-	89152685	89165767	0	4	1047,2506,198,637,	0,2005,8712,12445,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr2	89152685	89165767	T193661_T193661	0	-	89152685	89165767	0	4	1082,2506,1516,637,	0,2005,7394,12445,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	89153506	89155129	T193664_T193664	0	+	89153506	89155129	0	2	273,439,	0,1184,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	89156655	89165725	T193666_T193666	0	-	89156655	89165725	0	3	541,4132,595,	0,808,8475,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	89339952	89350941	T193685_T193685	0	+	89339952	89350941	0	2	111,2640,	0,8349,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	89340314	89350941	T193686_T193686	0	+	89340314	89350941	0	3	64,74,2640,	0,6725,7987,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	89346294	89350941	T193690_T193690	0	+	89346294	89350941	0	2	819,3233,	0,1414,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	89346294	89350941	T193689_T193689	0	+	89346294	89350941	0	2	819,2640,	0,2007,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	90188036	90191378	T193762_T193762	0	-	90188036	90191378	0	2	1261,942,	0,2400,
#Partially deleted in new
chr2	90476546	90482928	T193788_T193788	0	+	90476546	90482928	0	1	6382,	0,
#Partially deleted in new
chr2	90476627	90485277	T193791_T193791	0	-	90476627	90485277	0	2	5853,32,	0,8618,
#Partially deleted in new
chr2	90476627	90483449	T193789_T193789	0	-	90476627	90483449	0	2	4677,56,	0,6766,
#Partially deleted in new
chr2	90476627	90483511	T193790_T193790	0	-	90476627	90483511	0	2	4677,488,	0,6396,
#Partially deleted in new
chr2	90476627	90485788	T193792_T193792	0	-	90476627	90485788	0	2	4143,28,	0,9133,
#Partially deleted in new
chr2	90479513	90484027	T193793_T193793	0	+	90479513	90484027	0	2	2128,26,	0,4488,
#Partially deleted in new
chr2	90480510	90483070	T193794_T193794	0	+	90480510	90483070	0	2	911,1209,	0,1351,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	91671839	91673988	T193799_T193799	0	-	91671839	91673988	0	2	1050,975,	0,1174,
#Partially deleted in new
chr2	91734411	91735954	T193804_T193804	0	-	91734411	91735954	0	1	1543,	0,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr2	91734411	91750940	T193805_T193805	0	-	91734411	91750940	0	5	1298,2890,128,170,609,	0,3043,13054,14046,15920,
#Partially deleted in new
chr2	91744077	91751855	T193807_T193807	0	-	91744077	91751855	0	3	3516,170,1524,	0,4380,6254,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	97069342	97079837	T194492_T194492	0	+	97069342	97079837	0	2	436,6604,	0,3891,
#Partially deleted in new
chr2	98013046	98013725	T194794_T194794	0	-	98013046	98013725	0	1	679,	0,
#Partially deleted in new
chr2	98019637	98036091	T194797_T194797	0	+	98019637	98036091	0	3	168,5920,5462,	0,287,10992,
#Partially deleted in new
chr2	98081510	98106677	T194800_T194800	0	-	98081510	98106677	0	4	504,130,12546,2576,	0,7037,7259,22591,
#Boundary problem: need 45, got 42, diff 3, mapped 0.9
chr2	98081510	98206653	T194809_T194809	0	-	98081510	98206653	0	45	504,130,15229,3035,1342,30,308,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,138,107,174,115,666,	0,7037,7259,22591,26467,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,113858,115414,119896,120236,124477,
#Boundary problem: need 46, got 45, diff 1, mapped 1.0
chr2	98081510	98207256	T194819_T194819	0	-	98081510	98207256	0	46	504,221,130,16159,2753,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,107,174,115,1269,	0,6521,7037,7259,25056,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,115414,119896,120236,124477,
#Boundary problem: need 44, got 43, diff 1, mapped 1.0
chr2	98081510	98207266	T194829_T194829	0	-	98081510	98207266	0	44	504,221,130,20550,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,174,115,1279,	0,6521,7037,7259,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,119896,120236,124477,
#Boundary problem: need 44, got 42, diff 2, mapped 1.0
chr2	98081510	98206997	T194816_T194816	0	-	98081510	98206997	0	44	504,221,130,742,15255,2505,30,502,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,107,174,115,1010,	0,6521,7037,7259,9946,25304,41988,42516,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,115414,119896,120236,124477,
#Partially deleted in new
chr2	98081510	98107548	T194801_T194801	0	-	98081510	98107548	0	5	504,221,130,18367,206,	0,6521,7037,7259,25832,
#Boundary problem: need 44, got 43, diff 1, mapped 1.0
chr2	98081510	98207266	T194831_T194831	0	-	98081510	98207266	0	44	504,221,130,15229,2642,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,56,73,29,73,29,73,29,73,29,73,29,73,29,73,29,174,115,1279,	0,6521,7037,7259,25167,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,83172,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,119896,120236,124477,
#Boundary problem: need 46, got 45, diff 1, mapped 1.0
chr2	98081510	98207256	T194822_T194822	0	-	98081510	98207256	0	46	504,130,20550,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,68,138,107,174,115,1269,	0,7037,7259,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,111331,113858,115414,119896,120236,124477,
#Boundary problem: need 43, got 42, diff 1, mapped 1.0
chr2	98081510	98206997	T194815_T194815	0	-	98081510	98206997	0	43	504,130,96,17317,2505,30,502,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,29,174,115,1010,	0,7037,7259,7884,25304,41988,42516,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95784,119896,120236,124477,
#Boundary problem: need 40, got 39, diff 1, mapped 1.0
chr2	98081510	98206653	T194808_T194808	0	-	98081510	98206653	0	40	504,130,20550,30,502,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,174,115,666,	0,7037,7259,41988,42516,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,119896,120236,124477,
#Boundary problem: need 44, got 43, diff 1, mapped 1.0
chr2	98081510	98206573	T194805_T194805	0	-	98081510	98206573	0	44	504,130,17394,2341,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,174,115,586,	0,7037,7259,25468,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,119896,120236,124477,
#Boundary problem: need 47, got 46, diff 1, mapped 1.0
chr2	98081510	98206722	T194812_T194812	0	-	98081510	98206722	0	47	504,130,15961,2642,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,68,138,107,174,115,735,	0,7037,7259,25167,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,111331,113858,115414,119896,120236,124477,
#Boundary problem: need 42, got 41, diff 1, mapped 1.0
chr2	98081510	98207256	T194821_T194821	0	-	98081510	98207256	0	42	504,221,130,20550,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,174,115,1269,	0,6521,7037,7259,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,119896,120236,124477,
#Boundary problem: need 45, got 44, diff 1, mapped 1.0
chr2	98081510	98207256	T194824_T194824	0	-	98081510	98207256	0	45	504,130,12546,2642,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,107,174,115,1269,	0,7037,7259,25167,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,115414,119896,120236,124477,
#Boundary problem: need 44, got 43, diff 1, mapped 1.0
chr2	98081510	98207256	T194823_T194823	0	-	98081510	98207256	0	44	504,130,15229,2642,30,129,168,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,138,107,174,115,1269,	0,7037,7259,25167,41988,42516,42850,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,113858,115414,119896,120236,124477,
#Boundary problem: need 45, got 44, diff 1, mapped 1.0
chr2	98081510	98207266	T194830_T194830	0	-	98081510	98207266	0	45	504,130,20550,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,138,107,174,115,1279,	0,7037,7259,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,113858,115414,119896,120236,124477,
#Boundary problem: need 43, got 41, diff 2, mapped 1.0
chr2	98081510	98206710	T194810_T194810	0	-	98081510	98206710	0	43	504,130,12546,34,2402,30,239,89,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,174,115,723,	0,7037,7259,25167,25407,41988,42516,42929,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,119896,120236,124477,
#Boundary problem: need 46, got 45, diff 1, mapped 1.0
chr2	98081510	98206616	T194806_T194806	0	-	98081510	98206616	0	46	504,130,16159,2341,30,230,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,138,107,174,115,629,	0,7037,7259,25468,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,113858,115414,119896,120236,124477,
#Boundary problem: need 44, got 42, diff 2, mapped 1.0
chr2	98081510	98207266	T194832_T194832	0	-	98081510	98207266	0	44	504,130,17942,2505,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,174,115,1279,	0,7037,7259,25304,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,119896,120236,124477,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr2	98081510	98106677	T194799_T194799	0	-	98081510	98106677	0	5	504,221,130,15126,103,	0,6521,7037,7259,25064,
#Boundary problem: need 44, got 42, diff 2, mapped 1.0
chr2	98081510	98206362	T194802_T194802	0	-	98081510	98206362	0	44	504,221,130,17942,2402,30,308,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,107,174,115,375,	0,6521,7037,7259,25407,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,115414,119896,120236,124477,
#Boundary problem: need 47, got 45, diff 2, mapped 1.0
chr2	98081510	98207266	T194828_T194828	0	-	98081510	98207266	0	47	504,221,130,17942,2505,30,502,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,68,138,107,174,115,1279,	0,6521,7037,7259,25304,41988,42516,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,111331,113858,115414,119896,120236,124477,
#Boundary problem: need 47, got 45, diff 2, mapped 1.0
chr2	98081510	98207266	T194826_T194826	0	-	98081510	98207266	0	47	504,221,130,14098,3787,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,138,107,174,115,1279,	0,6521,7037,7259,24022,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,113858,115414,119896,120236,124477,
#Boundary problem: need 47, got 46, diff 1, mapped 1.0
chr2	98081510	98206616	T194807_T194807	0	-	98081510	98206616	0	47	504,221,130,12546,2642,30,308,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,138,107,174,115,629,	0,6521,7037,7259,25167,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,113858,115414,119896,120236,124477,
#Boundary problem: need 45, got 44, diff 1, mapped 1.0
chr2	98081510	98207266	T194825_T194825	0	-	98081510	98207266	0	45	504,221,130,16167,4186,30,502,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,68,138,107,174,115,1279,	0,6521,7037,7259,23623,41988,42516,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,111331,113858,115414,119896,120236,124477,
#Boundary problem: need 45, got 44, diff 1, mapped 1.0
chr2	98081510	98207256	T194820_T194820	0	-	98081510	98207256	0	45	504,221,130,16562,2341,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,174,115,1269,	0,6521,7037,7259,25468,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,119896,120236,124477,
#Boundary problem: need 47, got 46, diff 1, mapped 1.0
chr2	98081510	98206470	T194804_T194804	0	-	98081510	98206470	0	47	504,221,130,14084,2094,30,230,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,138,107,174,115,483,	0,6521,7037,7259,25715,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,113858,115414,119896,120236,124477,
#Boundary problem: need 44, got 43, diff 1, mapped 1.0
chr2	98081510	98206415	T194803_T194803	0	-	98081510	98206415	0	44	504,221,130,14084,1476,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,107,174,115,428,	0,6521,7037,7259,26333,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,115414,119896,120236,124477,
#Boundary problem: need 44, got 43, diff 1, mapped 1.0
chr2	98081510	98206764	T194814_T194814	0	-	98081510	98206764	0	44	504,130,12546,2642,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,138,107,174,115,777,	0,7037,7259,25167,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,113858,115414,119896,120236,124477,
#Boundary problem: need 42, got 40, diff 2, mapped 1.0
chr2	98081510	98207071	T194818_T194818	0	-	98081510	98207071	0	42	504,130,14098,3787,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,174,115,1084,	0,7037,7259,24022,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,119896,120236,124477,
#Boundary problem: need 45, got 44, diff 1, mapped 1.0
chr2	98081510	98206740	T194813_T194813	0	-	98081510	98206740	0	45	504,221,130,20550,30,502,153,915,184,1259,42,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,68,138,107,174,115,753,	0,6521,7037,7259,41988,42516,44533,46090,48132,50684,52254,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,111331,113858,115414,119896,120236,124477,
#Boundary problem: need 42, got 41, diff 1, mapped 1.0
chr2	98081510	98206997	T194817_T194817	0	-	98081510	98206997	0	42	504,130,20550,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,29,138,107,174,115,1010,	0,7037,7259,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95784,113858,115414,119896,120236,124477,
#Boundary problem: need 47, got 46, diff 1, mapped 1.0
chr2	98081510	98207266	T194827_T194827	0	-	98081510	98207266	0	47	504,130,96,14604,5218,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,138,107,174,115,1279,	0,7037,7259,7884,22591,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,74986,75153,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,113858,115414,119896,120236,124477,
#Boundary problem: need 45, got 43, diff 2, mapped 1.0
chr2	98081510	98206722	T194811_T194811	0	-	98081510	98206722	0	45	504,221,130,12546,5218,30,94,71,153,915,184,214,142,74,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,73,29,138,107,174,115,735,	0,6521,7037,7259,22591,41988,42516,42947,44533,46090,48132,50684,58278,67263,71252,71420,73120,73287,76863,77031,78742,78909,80618,80785,82488,82655,84371,84538,86241,86404,88120,88295,90012,90178,91889,92056,93751,93918,95617,95784,113858,115414,119896,120236,124477,
#Partially deleted in new
chr2	98104239	98107258	T194837_T194837	0	+	98104239	98107258	0	2	27,1231,	0,1788,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	103510692	103512208	T195711_T195711	0	-	103510692	103512208	0	2	544,117,	0,1399,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr2	127291615	127403760	T198451_T198451	0	-	127291615	127403760	0	5	2479,114,1800,277,153,	0,98911,105677,109468,111992,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	240197164	240212977	T210903_T210903	0	+	240197164	240212977	0	3	1385,1447,9791,	0,4471,6022,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr2	240198397	240212977	T210905_T210905	0	+	240198397	240212977	0	3	152,1949,8864,	0,3238,5716,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	240202714	240212977	T210907_T210907	0	+	240202714	240212977	0	2	17,9513,	0,750,
#Partially deleted in new
chr2	242743549	242746937	T211895_T211895	0	-	242743549	242746937	0	2	1215,33,	0,3355,
#Partially deleted in new
chr2	242743549	242750824	T211896_T211896	0	-	242743549	242750824	0	2	1215,3843,	0,3432,
#Partially deleted in new
chr2	242743549	242752182	T211903_T211903	0	-	242743549	242752182	0	4	1215,1479,270,23,	0,5389,8012,8610,
#Partially deleted in new
chr2	242743549	242752032	T211897_T211897	0	-	242743549	242752032	0	3	4238,1344,338,	0,5570,8145,
#Partially deleted in new
chr2	242743549	242752096	T211901_T211901	0	-	242743549	242752096	0	3	1215,2899,535,	0,4015,8012,
#Partially deleted in new
chr2	242743549	242752100	T211902_T211902	0	-	242743549	242752100	0	1	8551,	0,
#Partially deleted in new
chr2	242743549	242744640	T211893_T211893	0	-	242743549	242744640	0	2	157,333,	0,758,
#Partially deleted in new
chr2	242743549	242752096	T211900_T211900	0	-	242743549	242752096	0	4	1215,2116,48,402,	0,4798,8012,8145,
#Partially deleted in new
chr2	242743549	242752096	T211899_T211899	0	-	242743549	242752096	0	3	1215,3414,555,	0,3938,7992,
#Partially deleted in new
chr2	242743549	242752050	T211898_T211898	0	-	242743549	242752050	0	3	1215,1525,356,	0,5389,8145,
#Partially deleted in new
chr2	242743549	242744754	T211894_T211894	0	-	242743549	242744754	0	2	157,485,	0,720,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	242752239	242754514	T211913_T211913	0	-	242752239	242754514	0	2	73,1716,	0,559,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	242815614	242816529	T211952_T211952	0	-	242815614	242816529	0	2	54,709,	0,206,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	243082771	243189373	T212112_T212112	0	-	243082771	243189373	0	2	6503,320,	0,106282,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr2	243082771	243189373	T212111_T212111	0	-	243082771	243189373	0	2	6297,182,	0,106420,
#Partially deleted in new
chr2	243094709	243186512	T212113_T212113	0	-	243094709	243186512	0	2	162,3267,	0,88536,
#Partially deleted in new
chr2	243095920	243186512	T212115_T212115	0	-	243095920	243186512	0	2	104,1835,	0,88757,
#Partially deleted in new
chr2	243095920	243186512	T212114_T212114	0	-	243095920	243186512	0	2	38,4247,	0,86345,
#Partially deleted in new
chr2	243096142	243186512	T212117_T212117	0	-	243096142	243186512	0	2	251,4641,	0,85729,
#Partially deleted in new
chr2	243096142	243182156	T212116_T212116	0	-	243096142	243182156	0	2	1711,1771,	0,84243,
#Partially deleted in new
chr2	243098561	243185722	T212118_T212118	0	-	243098561	243185722	0	2	78,6123,	0,81038,
#Partially deleted in new
chr2	243101148	243179222	T212119_T212119	0	-	243101148	243179222	0	2	430,2659,	0,75415,
#Partially deleted in new
chr2	243160759	243186512	T212121_T212121	0	-	243160759	243186512	0	2	78,10005,	0,15748,
#Partially deleted in new
chr2	243161781	243186512	T212124_T212124	0	-	243161781	243186512	0	2	1665,10005,	0,14726,
#Partially deleted in new
chr2	243168773	243186512	T212126_T212126	0	-	243168773	243186512	0	4	46,49,2005,7949,	0,139,7734,9790,
#Partially deleted in new
chr2	243175332	243181862	T212127_T212127	0	+	243175332	243181862	0	2	17,2305,	0,4225,
#Partially deleted in new
chr2	243176496	243183531	T212128_T212128	0	-	243176496	243183531	0	2	161,5417,	0,1618,
#Partially deleted in new
chr2	243179893	243181862	T212129_T212129	0	+	243179893	243181862	0	2	810,770,	0,1199,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr20	1391755	1472299	T212442_T212442	0	-	1391755	1472299	0	20	3203,172,92,6461,165,138,110,93,166,6,75,98,1627,298,143,2545,66,342,72,379,	0,6272,7801,26340,34555,41382,41920,43102,43856,44603,47089,53218,55609,61604,62007,62681,66227,67155,68883,80165,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr20	1391755	1472272	T212440_T212440	0	-	1391755	1472272	0	20	3203,172,92,6461,165,138,110,93,166,75,98,397,1154,298,143,79,66,342,366,352,	0,6272,7801,26340,34555,41382,41920,43102,43856,47089,53218,55609,56082,61604,62007,62681,66227,67155,68589,80165,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr20	1391755	1472272	T212441_T212441	0	-	1391755	1472272	0	20	3203,172,92,6461,165,138,110,93,166,75,98,397,1154,298,143,79,66,342,72,352,	0,6272,7801,26340,34555,41382,41920,43102,43856,47089,53218,55609,56082,61604,62007,62681,66227,67155,68883,80165,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr20	29645031	29653910	T215912_T215912	0	-	29645031	29653910	0	2	1374,7442,	0,1437,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr20	34099740	34107034	T216836_T216836	0	-	34099740	34107034	0	2	2518,4179,	0,3115,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr20	34148266	34151682	T216986_T216986	0	+	34148266	34151682	0	2	73,2204,	0,1212,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr20	37007559	37012423	T217508_T217508	0	+	37007559	37012423	0	2	2738,1680,	0,3184,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr20	45766728	45792172	T218960_T218960	0	-	45766728	45792172	0	2	12226,9467,	0,15977,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	47099590	47133424	T219375_T219375	0	+	47099590	47133424	0	4	142,3769,393,980,	0,28400,32266,32854,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	47131274	47133424	T219398_T219398	0	-	47131274	47133424	0	4	300,413,411,632,	0,398,909,1518,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr20	61085794	61091439	T221809_T221809	0	-	61085794	61091439	0	3	4712,531,230,	0,4819,5415,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147124	T221831_T221831	0	-	61141435	61147124	0	6	1139,1153,155,174,169,146,	0,1477,3319,3598,5244,5543,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61148915	T221885_T221885	0	-	61141435	61148915	0	6	2630,155,174,197,146,283,	0,3319,3598,5216,5543,7197,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr20	61141435	61144376	T221812_T221812	0	-	61141435	61144376	0	2	535,1950,	0,991,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr20	61141435	61145207	T221815_T221815	0	-	61141435	61145207	0	3	1618,204,174,	0,2426,3598,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147124	T221828_T221828	0	-	61141435	61147124	0	6	535,148,1153,174,108,104,	0,991,1477,3598,5305,5585,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148915	T221879_T221879	0	-	61141435	61148915	0	5	836,148,1153,174,283,	0,991,1477,3598,7197,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr20	61141435	61148725	T221856_T221856	0	-	61141435	61148725	0	8	1613,619,155,174,150,652,104,93,	0,2011,3319,3598,4083,4761,5585,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148743	T221861_T221861	0	-	61141435	61148743	0	5	1721,619,162,174,111,	0,2011,3312,3598,7197,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr20	61141435	61144740	T221813_T221813	0	-	61141435	61144740	0	3	1139,1153,580,	0,1477,2725,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147161	T221839_T221839	0	-	61141435	61147161	0	7	535,627,204,162,174,1330,183,	0,991,2426,3312,3598,4083,5543,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	61141435	61150709	T221891_T221891	0	-	61141435	61150709	0	4	2393,162,174,2077,	0,3312,3598,7197,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	61141435	61150709	T221893_T221893	0	-	61141435	61150709	0	4	2630,155,174,2077,	0,3319,3598,7197,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147649	T221851_T221851	0	-	61141435	61147649	0	6	1139,1464,162,174,1330,671,	0,1477,3312,3598,4083,5543,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61145964	T221820_T221820	0	-	61141435	61145964	0	6	535,148,1153,155,174,446,	0,991,1477,3319,3598,4083,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61145927	T221819_T221819	0	-	61141435	61145927	0	5	1139,1153,162,174,409,	0,1477,3312,3598,4083,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61148915	T221883_T221883	0	-	61141435	61148915	0	6	535,148,1153,155,174,283,	0,991,1477,3319,3598,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148814	T221869_T221869	0	-	61141435	61148814	0	5	2630,174,1330,146,182,	0,3598,4083,5543,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61147124	T221825_T221825	0	-	61141435	61147124	0	5	2630,155,174,197,104,	0,3319,3598,5216,5585,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148911	T221873_T221873	0	-	61141435	61148911	0	5	2630,155,174,197,279,	0,3319,3598,5216,7197,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr20	61141435	61147124	T221834_T221834	0	-	61141435	61147124	0	8	535,148,1153,162,174,150,652,146,	0,991,1477,3312,3598,4083,4761,5543,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61148725	T221855_T221855	0	-	61141435	61148725	0	7	1139,1153,155,174,1330,104,93,	0,1477,3319,3598,4083,5585,7197,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147124	T221827_T221827	0	-	61141435	61147124	0	7	535,148,1153,155,174,203,146,	0,991,1477,3319,3598,5210,5543,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147309	T221842_T221842	0	-	61141435	61147309	0	6	1139,1153,155,174,1330,331,	0,1477,3319,3598,4083,5543,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61147161	T221841_T221841	0	-	61141435	61147161	0	5	2393,162,174,1330,183,	0,3312,3598,4083,5543,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr20	61141435	61148714	T221854_T221854	0	-	61141435	61148714	0	3	2630,97,82,	0,3598,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148911	T221875_T221875	0	-	61141435	61148911	0	5	2630,155,174,1330,279,	0,3319,3598,4083,7197,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr20	61141435	61144065	T221811_T221811	0	-	61141435	61144065	0	3	1139,136,619,	0,1477,2011,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr20	61141435	61148743	T221864_T221864	0	-	61141435	61148743	0	8	535,148,1153,162,174,1330,146,111,	0,991,1477,3312,3598,4083,5543,7197,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61148911	T221877_T221877	0	-	61141435	61148911	0	6	2393,155,174,197,146,279,	0,3319,3598,5216,5543,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148726	T221860_T221860	0	-	61141435	61148726	0	5	535,148,1153,174,94,	0,991,1477,3598,7197,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	61141435	61149516	T221888_T221888	0	-	61141435	61149516	0	4	2393,174,197,884,	0,3598,5216,7197,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	61141435	61145888	T221817_T221817	0	-	61141435	61145888	0	4	2630,162,174,370,	0,3312,3598,4083,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	61141435	61148915	T221882_T221882	0	-	61141435	61148915	0	4	2630,162,174,283,	0,3312,3598,7197,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr20	61141435	61146788	T221821_T221821	0	-	61141435	61146788	0	3	2630,174,48,	0,3598,5305,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147649	T221848_T221848	0	-	61141435	61147649	0	6	1139,916,155,174,1330,671,	0,1477,3319,3598,4083,5543,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61148814	T221866_T221866	0	-	61141435	61148814	0	7	1139,1153,155,174,197,146,182,	0,1477,3319,3598,5216,5543,7197,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	61141435	61147161	T221840_T221840	0	-	61141435	61147161	0	4	2630,174,169,183,	0,3598,5244,5543,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61145207	T221814_T221814	0	-	61141435	61145207	0	6	535,148,141,619,155,174,	0,991,1477,2011,3319,3598,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147132	T221835_T221835	0	-	61141435	61147132	0	6	2630,174,150,213,197,112,	0,3598,4083,4761,5216,5585,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147863	T221853_T221853	0	-	61141435	61147863	0	7	535,1639,155,174,169,104,34,	0,991,3319,3598,5244,5585,6394,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147124	T221824_T221824	0	-	61141435	61147124	0	6	535,1639,155,174,1330,104,	0,991,3319,3598,4083,5585,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147309	T221844_T221844	0	-	61141435	61147309	0	7	535,148,1153,155,174,197,331,	0,991,1477,3319,3598,5216,5543,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	61141435	61145668	T221816_T221816	0	-	61141435	61145668	0	4	2393,155,174,150,	0,3319,3598,4083,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr20	61141435	61148915	T221884_T221884	0	-	61141435	61148915	0	3	2393,174,283,	0,3598,7197,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61150709	T221892_T221892	0	-	61141435	61150709	0	7	2630,162,174,150,652,146,2077,	0,3312,3598,4083,4761,5543,7197,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147863	T221852_T221852	0	-	61141435	61147863	0	7	1139,1153,155,174,169,104,34,	0,1477,3319,3598,5244,5585,6394,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61148743	T221862_T221862	0	-	61141435	61148743	0	6	535,1639,174,197,104,111,	0,991,3598,5216,5585,7197,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr20	61141435	61148726	T221859_T221859	0	-	61141435	61148726	0	9	535,148,1153,155,174,150,652,104,94,	0,991,1477,3319,3598,4083,4761,5585,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61147161	T221836_T221836	0	-	61141435	61147161	0	5	2393,162,174,197,183,	0,3312,3598,5216,5543,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147124	T221832_T221832	0	-	61141435	61147124	0	6	1139,1153,155,174,203,104,	0,1477,3319,3598,5210,5585,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	61141435	61148743	T221863_T221863	0	-	61141435	61148743	0	4	2630,174,197,111,	0,3598,5216,7197,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147649	T221846_T221846	0	-	61141435	61147649	0	7	535,148,1153,162,174,1330,629,	0,991,1477,3312,3598,4083,5585,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61145927	T221818_T221818	0	-	61141435	61145927	0	5	836,148,1153,174,409,	0,991,1477,3598,4083,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147124	T221829_T221829	0	-	61141435	61147124	0	6	535,1402,162,174,169,99,	0,991,3312,3598,5244,5590,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	61141435	61148915	T221886_T221886	0	-	61141435	61148915	0	4	2393,155,174,283,	0,3319,3598,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148814	T221867_T221867	0	-	61141435	61148814	0	5	2630,162,174,197,182,	0,3312,3598,5216,7197,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr20	61141435	61149516	T221889_T221889	0	-	61141435	61149516	0	4	2630,174,169,884,	0,3598,5244,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148911	T221874_T221874	0	-	61141435	61148911	0	5	2630,155,174,169,279,	0,3319,3598,5244,7197,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61148814	T221868_T221868	0	-	61141435	61148814	0	7	535,148,1153,155,174,150,182,	0,991,1477,3319,3598,4083,7197,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr20	61141435	61146848	T221822_T221822	0	-	61141435	61146848	0	3	2630,174,652,	0,3598,4761,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147124	T221826_T221826	0	-	61141435	61147124	0	7	1139,916,155,174,150,652,104,	0,1477,3319,3598,4083,4761,5585,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147161	T221837_T221837	0	-	61141435	61147161	0	7	535,148,1153,155,174,788,183,	0,991,1477,3319,3598,4625,5543,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61149516	T221887_T221887	0	-	61141435	61149516	0	5	1139,916,162,174,884,	0,1477,3312,3598,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148911	T221872_T221872	0	-	61141435	61148911	0	5	2630,155,174,108,279,	0,3319,3598,5305,7197,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147309	T221843_T221843	0	-	61141435	61147309	0	7	535,403,1153,155,174,1330,331,	0,991,1477,3319,3598,4083,5543,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148814	T221871_T221871	0	-	61141435	61148814	0	5	2630,174,197,146,182,	0,3598,5216,5543,7197,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147124	T221830_T221830	0	-	61141435	61147124	0	6	1139,1153,155,174,108,104,	0,1477,3319,3598,5305,5585,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147161	T221838_T221838	0	-	61141435	61147161	0	6	535,148,1153,174,1330,183,	0,991,1477,3598,4083,5543,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr20	61141435	61150709	T221894_T221894	0	-	61141435	61150709	0	3	2630,174,2077,	0,3598,7197,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61148911	T221876_T221876	0	-	61141435	61148911	0	7	535,946,604,162,174,1330,279,	0,991,2026,3312,3598,4083,7197,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61147649	T221850_T221850	0	-	61141435	61147649	0	6	1618,619,155,174,1330,671,	0,2011,3319,3598,4083,5543,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61148726	T221858_T221858	0	-	61141435	61148726	0	7	1139,1153,155,174,197,110,94,	0,1477,3319,3598,5216,5579,7197,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr20	61141435	61147124	T221833_T221833	0	-	61141435	61147124	0	9	535,148,141,619,174,150,213,197,104,	0,991,1477,2011,3598,4083,4761,5216,5585,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61148725	T221857_T221857	0	-	61141435	61148725	0	7	1139,1153,155,174,150,213,93,	0,1477,3319,3598,4083,4761,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148915	T221881_T221881	0	-	61141435	61148915	0	5	1618,619,155,174,283,	0,2011,3319,3598,7197,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147649	T221849_T221849	0	-	61141435	61147649	0	7	1139,1153,155,174,150,652,671,	0,1477,3319,3598,4083,4761,5543,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr20	61141435	61147649	T221847_T221847	0	-	61141435	61147649	0	7	535,148,1464,162,174,1330,671,	0,991,1477,3312,3598,4083,5543,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61147649	T221845_T221845	0	-	61141435	61147649	0	5	2630,155,174,1330,671,	0,3319,3598,4083,5543,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61149516	T221890_T221890	0	-	61141435	61149516	0	5	1618,204,155,174,884,	0,2426,3319,3598,7197,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61148915	T221880_T221880	0	-	61141435	61148915	0	6	1139,389,619,155,174,283,	0,1477,2011,3319,3598,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148814	T221870_T221870	0	-	61141435	61148814	0	5	2630,155,174,891,182,	0,3319,3598,4083,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61148915	T221878_T221878	0	-	61141435	61148915	0	5	2393,155,174,197,283,	0,3319,3598,5216,7197,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr20	61141435	61148814	T221865_T221865	0	-	61141435	61148814	0	6	836,148,1153,174,197,182,	0,991,1477,3598,5216,7197,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr20	61141435	61146848	T221823_T221823	0	-	61141435	61146848	0	5	1139,1153,162,174,197,	0,1477,3312,3598,5216,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr21	17255807	17267087	T223670_T223670	0	-	17255807	17267087	0	2	8470,1720,	0,9560,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr21	17443433	17984499	T223686_T223686	0	+	17443433	17984499	0	8	285,97,60,72,49,61,115,5186,	0,110477,159942,320500,416376,466265,523226,535880,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr21	17566609	17984499	T223691_T223691	0	+	17566609	17984499	0	6	344,60,72,49,61,5186,	0,36766,197324,293200,343089,412704,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr21	17566620	17984499	T223694_T223694	0	+	17566620	17984499	0	7	333,60,72,49,61,115,5186,	0,36755,197313,293189,343078,400039,412693,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	17566780	17984499	T223698_T223698	0	+	17566780	17984499	0	5	173,60,72,49,5186,	0,36595,197153,293029,412533,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	17566780	17984499	T223699_T223699	0	+	17566780	17984499	0	5	173,60,49,61,5186,	0,36595,293029,342918,412533,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	17791585	17984499	T223708_T223708	0	+	17791585	17984499	0	3	476,49,5186,	0,68224,187728,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	17791585	17984499	T223707_T223707	0	+	17791585	17984499	0	5	476,49,61,115,5186,	0,68224,118113,175074,187728,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	17791585	17984499	T223706_T223706	0	+	17791585	17984499	0	4	476,49,61,5186,	0,68224,118113,187728,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	18619769	18640770	T223818_T223818	0	-	18619769	18640770	0	4	1380,110,84,3677,	0,11885,12523,17324,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr21	22593818	22607552	T224121_T224121	0	-	22593818	22607552	0	2	2250,8584,	0,5150,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr21	26541796	26839878	T224434_T224434	0	-	26541796	26839878	0	14	163,150,205,88,93,216,166,13000,93,96,244,236,55,967,	0,1274,5758,164254,191705,192262,203393,203855,251223,255069,260281,283706,296938,297115,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr21	26541796	26797195	T224432_T224432	0	-	26541796	26797195	0	11	163,150,205,88,93,216,166,13000,169,93,330,	0,1274,5758,164254,191705,192262,203393,203855,219429,251223,255069,
#Boundary problem: need 17, got 16, diff 1, mapped 0.9
chr21	26541796	26839878	T224433_T224433	0	-	26541796	26839878	0	17	163,150,205,88,93,216,166,13000,169,93,96,2162,18197,236,63,55,1003,	0,1274,5758,164254,191705,192262,203393,203855,219429,251223,255069,260281,262773,283706,290871,296938,297079,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr21	26599346	26839878	T224438_T224438	0	-	26599346	26839878	0	12	1689,88,93,216,13462,93,96,2162,18197,236,55,1003,	0,106704,134155,134712,145843,193673,197519,202731,205223,226156,239388,239529,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	30734169	30758795	T224876_T224876	0	-	30734169	30758795	0	4	9121,1458,111,935,	0,9239,15331,23691,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr21	31903045	31994802	T224962_T224962	0	+	31903045	31994802	0	6	236,51,133,123,198,1561,	0,37260,45905,89102,89864,90196,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	31903045	31994802	T224961_T224961	0	+	31903045	31994802	0	5	236,51,123,198,1561,	0,37260,89102,89864,90196,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr21	33780533	33897366	T225104_T225104	0	+	33780533	33897366	0	10	1622,2581,197,124,153,144,81,90,3892,5441,	0,2207,45086,49371,59470,86803,93191,95702,106590,111392,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr21	33780533	33897366	T225105_T225105	0	+	33780533	33897366	0	10	1622,2581,197,124,153,144,72,90,3892,5441,	0,2207,45086,49371,59470,86803,93191,95702,106590,111392,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr21	33780533	33889016	T225102_T225102	0	+	33780533	33889016	0	7	1622,2581,153,144,72,90,1893,	0,2207,59470,86803,93191,95702,106590,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr21	33780533	33897366	T225106_T225106	0	+	33780533	33897366	0	11	1622,1761,197,124,153,144,81,90,2199,284,5441,	0,2207,45086,49371,59470,86803,93191,95702,106590,110198,111392,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr21	33780533	33897366	T225103_T225103	0	+	33780533	33897366	0	11	1622,2581,197,124,153,144,81,90,1893,1599,5441,	0,2207,45086,49371,59470,86803,93191,95702,106590,108883,111392,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	39580833	39588592	T225968_T225968	0	-	39580833	39588592	0	4	1922,375,368,794,	0,3683,6260,6965,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	39580833	39588592	T225964_T225964	0	-	39580833	39588592	0	3	741,368,794,	0,6260,6965,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	39580833	39588592	T225966_T225966	0	-	39580833	39588592	0	4	741,368,73,794,	0,6260,6796,6965,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	39580833	39588592	T225965_T225965	0	-	39580833	39588592	0	4	741,368,151,794,	0,6260,6718,6965,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	39580833	39588592	T225969_T225969	0	-	39580833	39588592	0	5	1922,375,368,151,794,	0,3683,6260,6718,6965,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	39580833	39588592	T225967_T225967	0	-	39580833	39588592	0	4	1922,313,368,794,	0,3683,6260,6965,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	39584516	39588592	T225970_T225970	0	-	39584516	39588592	0	5	313,156,368,73,794,	0,2078,2577,3113,3282,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	39586345	39588592	T225974_T225974	0	-	39586345	39588592	0	3	405,368,794,	0,748,1453,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	39586345	39588592	T225973_T225973	0	-	39586345	39588592	0	4	405,368,78,794,	0,748,1279,1453,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	39586345	39588592	T225972_T225972	0	-	39586345	39588592	0	4	405,373,73,794,	0,743,1284,1453,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	39586345	39588592	T225971_T225971	0	-	39586345	39588592	0	4	405,373,78,794,	0,743,1279,1453,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr21	41234072	41236505	T226414_T226414	0	-	41234072	41236505	0	2	33,1941,	0,492,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr21	41234380	41236505	T226415_T226415	0	-	41234380	41236505	0	2	256,1408,	0,717,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	42921363	42955561	T226584_T226584	0	-	42921363	42955561	0	5	3756,77,121,273,2370,	0,9860,10895,13470,31828,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	42929491	42955561	T226587_T226587	0	-	42929491	42955561	0	4	1809,121,273,2370,	0,2767,5342,23700,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	42929491	42955561	T226588_T226588	0	-	42929491	42955561	0	5	1809,121,273,600,2370,	0,2767,5342,5719,23700,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr21	42948068	42955561	T226591_T226591	0	-	42948068	42955561	0	2	284,2370,	0,5123,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	42948997	42955549	T226593_T226593	0	+	42948997	42955549	0	3	3610,210,2071,	0,4186,4481,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	42948997	42955549	T226592_T226592	0	+	42948997	42955549	0	3	3610,262,2071,	0,4134,4481,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	42949169	42955549	T226594_T226594	0	+	42949169	42955549	0	3	3438,682,2071,	0,3542,4309,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	42951486	42955549	T226595_T226595	0	+	42951486	42955549	0	4	458,225,682,2071,	0,896,1225,1992,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	42951648	42955549	T226597_T226597	0	+	42951648	42955549	0	4	92,225,210,2071,	0,734,1535,1830,
#Partially deleted in new
chr21	43005587	43005823	T226598_T226598	0	+	43005587	43005823	0	2	85,13,	0,223,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr21	43005589	43013654	T226600_T226600	0	-	43005589	43013654	0	2	4558,758,	0,7307,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr21	43005589	43010565	T226599_T226599	0	-	43005589	43010565	0	2	3974,515,	0,4461,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	44682662	44698275	T227208_T227208	0	+	44682662	44698275	0	5	797,84,1552,1803,2443,	0,1061,7187,11155,13170,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	44682662	44698275	T227209_T227209	0	+	44682662	44698275	0	4	797,3408,1803,2443,	0,7187,11155,13170,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	44682662	44698275	T227207_T227207	0	+	44682662	44698275	0	5	1145,1797,227,1803,2443,	0,7187,10368,11155,13170,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr21	44682662	44698275	T227210_T227210	0	+	44682662	44698275	0	4	1145,3408,1803,2443,	0,7187,11155,13170,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr21	44682666	44692514	T227211_T227211	0	+	44682666	44692514	0	2	1729,2665,	0,7183,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr21	44682669	44692514	T227212_T227212	0	+	44682669	44692514	0	2	790,2662,	0,7183,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	44682669	44698275	T227213_T227213	0	+	44682669	44698275	0	3	1138,1797,5245,	0,7180,10361,
#Boundary problem: need 50, got 49, diff 1, mapped 1.0
chr21	45431598	45570492	T227493_T227493	0	+	45431598	45570492	0	50	843,82,136,197,196,112,248,147,115,77,92,141,113,515,142,159,230,101,127,171,178,195,4142,113,95,100,144,136,230,144,71,137,149,148,151,181,148,109,66,219,151,75,2929,265,53,114,120,157,3830,1908,	0,20373,26074,40562,43980,47385,51820,62606,63321,64834,65975,67846,68297,71070,72404,75084,75981,78115,80205,82345,86639,91060,91575,97266,102035,102461,102907,103546,103973,106102,107045,107669,108630,108913,109234,110459,112862,114293,115182,116214,116529,116834,118880,121857,122385,124343,125460,131488,133104,136986,
#Boundary problem: need 51, got 50, diff 1, mapped 1.0
chr21	45431598	45570492	T227494_T227494	0	+	45431598	45570492	0	51	843,82,136,197,196,112,248,147,115,77,92,141,113,515,142,159,230,101,127,171,178,195,4142,113,95,100,144,136,230,144,71,137,149,148,151,181,148,109,66,219,151,75,2929,265,54,114,120,93,157,3830,1908,	0,20373,26074,40562,43980,47385,51820,62606,63321,64834,65975,67846,68297,71070,72404,75084,75981,78115,80205,82345,86639,91060,91575,97266,102035,102461,102907,103546,103973,106102,107045,107669,108630,108913,109234,110459,112862,114293,115182,116214,116529,116834,118880,121857,122384,124343,125460,128533,131488,133104,136986,
#Boundary problem: need 50, got 49, diff 1, mapped 1.0
chr21	45431937	45578750	T227496_T227496	0	+	45431937	45578750	0	50	504,82,136,197,196,112,248,147,115,77,92,141,113,515,142,159,230,101,127,171,178,195,4142,113,95,100,144,136,230,144,71,137,149,148,151,181,148,109,66,219,151,75,3242,53,114,120,93,157,13468,515,	0,20034,25735,40223,43641,47046,51481,62267,62982,64495,65636,67507,67958,70731,72065,74745,75642,77776,79866,82006,86300,90721,91236,96927,101696,102122,102568,103207,103634,105763,106706,107330,108291,108574,108895,110120,112523,113954,114843,115875,116190,116495,118541,122046,124004,125121,128194,131149,132765,146298,
#Boundary problem: need 56, got 55, diff 1, mapped 1.0
chr21	45431980	45607197	T227497_T227497	0	+	45431980	45607197	0	56	461,82,136,197,196,112,248,147,115,77,92,141,113,515,142,159,230,101,127,171,178,195,4142,113,95,100,144,136,230,144,71,137,149,148,151,181,148,109,66,119,219,151,75,538,1450,53,114,120,93,157,13172,3271,5777,3491,7828,3655,	0,19991,25692,40180,43598,47003,51438,62224,62939,64452,65593,67464,67915,70688,72022,74702,75599,77733,79823,81963,86257,90678,91193,96884,101653,102079,102525,103164,103591,105720,106663,107287,108248,108531,108852,110077,112480,113911,114800,115475,115832,116147,116452,118498,120290,122003,123961,125078,128151,131106,132722,150484,153937,159947,163582,171562,
#Boundary problem: need 51, got 50, diff 1, mapped 1.0
chr21	45432235	45586522	T227498_T227498	0	+	45432235	45586522	0	51	206,82,136,197,196,112,248,147,115,77,92,141,113,515,142,159,230,101,127,171,178,195,4142,113,95,100,144,136,230,144,71,137,149,148,151,181,148,109,66,219,151,75,3242,53,114,120,93,157,13172,2746,409,	0,19736,25437,39925,43343,46748,51183,61969,62684,64197,65338,67209,67660,70433,71767,74447,75344,77478,79568,81708,86002,90423,90938,96629,101398,101824,102270,102909,103336,105465,106408,107032,107993,108276,108597,109822,112225,113656,114545,115577,115892,116197,118243,121748,123706,124823,127896,130851,132467,150229,153878,
#Boundary problem: need 55, got 54, diff 1, mapped 1.0
chr21	45432235	45607197	T227499_T227499	0	+	45432235	45607197	0	55	206,82,136,197,196,112,116,248,147,115,77,92,141,113,515,142,159,230,101,127,171,178,195,4142,113,95,100,144,136,230,144,71,137,149,148,151,181,148,109,66,219,151,75,3242,53,114,120,93,157,13172,2654,4199,3491,7828,3655,	0,19736,25437,39925,43343,46748,50698,51183,61969,62684,64197,65338,67209,67660,70433,71767,74447,75344,77478,79568,81708,86002,90423,90938,96629,101398,101824,102270,102909,103336,105465,106408,107032,107993,108276,108597,109822,112225,113656,114545,115577,115892,116197,118243,121748,123706,124823,127896,130851,132467,150229,155260,159692,163327,171307,
#Boundary problem: need 55, got 54, diff 1, mapped 1.0
chr21	45432317	45607197	T227500_T227500	0	+	45432317	45607197	0	55	124,82,136,197,196,112,248,147,115,77,92,141,113,515,142,159,230,101,127,171,109,178,195,4142,113,95,100,144,136,230,144,71,137,149,148,151,181,148,109,66,219,151,75,3242,53,114,120,93,157,13172,2416,5998,3491,7828,3655,	0,19654,25355,39843,43261,46666,51101,61887,62602,64115,65256,67127,67578,70351,71685,74365,75262,77396,79486,81626,84168,85920,90341,90856,96547,101316,101742,102188,102827,103254,105383,106326,106950,107911,108194,108515,109740,112143,113574,114463,115495,115810,116115,118161,121666,123624,124741,127814,130769,132385,150147,153379,159610,163245,171225,
#Boundary problem: need 49, got 48, diff 1, mapped 1.0
chr21	45432333	45578750	T227502_T227502	0	+	45432333	45578750	0	49	108,82,136,197,196,112,248,147,115,77,92,141,113,515,142,159,230,101,127,171,195,4142,113,95,100,144,136,230,144,71,137,149,148,151,181,148,109,66,219,151,75,3242,53,114,120,93,157,5706,3968,	0,19638,25339,39827,43245,46650,51085,61871,62586,64099,65240,67111,67562,70335,71669,74349,75246,77380,79470,81610,90325,90840,96531,101300,101726,102172,102811,103238,105367,106310,106934,107895,108178,108499,109724,112127,113558,114447,115479,115794,116099,118145,121650,123608,124725,127798,130753,132369,142449,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	46408486	46425486	T227876_T227876	0	-	46408486	46425486	0	3	3261,5753,1128,	0,5332,15872,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	46408486	46424986	T227871_T227871	0	-	46408486	46424986	0	5	2788,392,129,5753,628,	0,2872,3384,5332,15872,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	46408486	46424986	T227870_T227870	0	-	46408486	46424986	0	3	2788,8213,628,	0,2872,15872,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr21	46408486	46425486	T227875_T227875	0	-	46408486	46425486	0	3	3264,5753,1128,	0,5332,15872,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr21	46408486	46424934	T227869_T227869	0	-	46408486	46424934	0	5	3261,1403,488,1608,576,	0,5332,8897,9477,15872,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	18033773	18044159	T228835_T228835	0	-	18033773	18044159	0	3	705,3394,27,	0,853,10359,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	18033773	18050100	T228836_T228836	0	-	18033773	18050100	0	3	705,3608,58,	0,853,16269,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	18033773	18050123	T228837_T228837	0	-	18033773	18050123	0	3	705,3394,81,	0,853,16269,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	18033773	18043813	T228834_T228834	0	-	18033773	18043813	0	3	705,3394,170,	0,853,9870,
#Partially deleted in new
chr22	20328707	20341098	T229518_T229518	0	-	20328707	20341098	0	4	469,979,133,89,	0,1352,3048,12302,
#Partially deleted in new
chr22	20328707	20341100	T229519_T229519	0	-	20328707	20341100	0	5	469,979,348,1445,91,	0,1352,3048,8298,12302,
#Partially deleted in new
chr22	20328707	20341090	T229517_T229517	0	-	20328707	20341090	0	5	469,979,133,117,81,	0,1352,3048,9626,12302,
#Partially deleted in new
chr22	20329534	20341100	T229520_T229520	0	-	20329534	20341100	0	4	1504,348,1445,91,	0,2221,7471,11475,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	22463674	22478157	T230196_T230196	0	-	22463674	22478157	0	4	5964,879,474,228,	0,8203,9222,14255,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	22567058	22585733	T230211_T230211	0	-	22567058	22585733	0	3	1026,143,8574,	0,9602,10101,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	22616719	22631271	T230216_T230216	0	-	22616719	22631271	0	2	8160,5511,	0,9041,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	22636866	22652430	T230227_T230227	0	-	22636866	22652430	0	5	3671,1484,128,171,384,	0,3734,12301,13293,15180,
#Partially deleted in new
chr22	22640303	22641605	T230229_T230229	0	+	22640303	22641605	0	2	128,439,	0,863,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	22700359	22730642	T230291_T230291	0	-	22700359	22730642	0	3	30,154,2417,	0,27130,27866,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr22	27053070	27067844	T231407_T231407	0	+	27053070	27067844	0	8	248,173,83,1480,126,245,2545,24,	0,375,6209,8350,10077,11050,12125,14750,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr22	27053070	27067844	T231408_T231408	0	+	27053070	27067844	0	8	248,173,194,1480,126,245,2545,24,	0,375,6209,8350,10077,11050,12125,14750,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr22	27053070	27067844	T231409_T231409	0	+	27053070	27067844	0	8	248,173,83,1406,126,245,2545,24,	0,375,6209,8424,10077,11050,12125,14750,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	27053248	27064163	T231410_T231410	0	+	27053248	27064163	0	5	70,83,1406,126,43,	0,6031,8246,9899,10872,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	27053248	27064163	T231411_T231411	0	+	27053248	27064163	0	5	70,83,1480,126,43,	0,6031,8172,9899,10872,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr22	27053248	27067844	T231415_T231415	0	+	27053248	27067844	0	8	70,173,194,1406,126,245,2545,24,	0,197,6031,8246,9899,10872,11947,14572,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr22	27053248	27064400	T231413_T231413	0	+	27053248	27064400	0	7	70,173,83,1406,126,158,24,	0,197,6031,8246,9899,10872,11128,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr22	27053248	27064400	T231412_T231412	0	+	27053248	27064400	0	7	70,173,83,1480,126,158,24,	0,197,6031,8172,9899,10872,11128,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr22	27053248	27064400	T231414_T231414	0	+	27053248	27064400	0	7	70,173,194,1406,126,158,24,	0,197,6031,8246,9899,10872,11128,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	27598859	27611076	T231510_T231510	0	-	27598859	27611076	0	2	2191,8188,	0,4029,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	28071045	28091928	T231595_T231595	0	-	28071045	28091928	0	5	372,679,192,166,472,	0,480,2285,14672,20411,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr22	36536382	36603568	T232958_T232958	0	-	36536382	36603568	0	7	536,2282,127,47,97,63,2895,	0,49294,54974,58993,61363,61656,64291,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	37122784	37142402	T233060_T233060	0	-	37122784	37142402	0	4	730,628,194,180,	0,17548,18988,19438,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	37136841	37142465	T233062_T233062	0	-	37136841	37142465	0	3	730,1634,243,	0,3491,5381,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	37343352	37351909	T233114_T233114	0	-	37343352	37351909	0	3	3033,303,221,	0,3484,8336,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	37343352	37359527	T233117_T233117	0	-	37343352	37359527	0	4	3033,303,51,167,	0,3484,13837,16008,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	37343352	37348022	T233103_T233103	0	-	37343352	37348022	0	2	3033,1212,	0,3458,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	37343352	37350780	T233106_T233106	0	-	37343352	37350780	0	3	3033,594,1092,	0,3484,6336,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	37343352	37351909	T233113_T233113	0	-	37343352	37351909	0	4	3033,303,252,221,	0,3484,6336,8336,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	37343352	37350843	T233108_T233108	0	-	37343352	37350843	0	3	3033,2240,1155,	0,3484,6336,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	37343352	37350686	T233104_T233104	0	-	37343352	37350686	0	3	3033,303,998,	0,3484,6336,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	37343352	37352213	T233116_T233116	0	-	37343352	37352213	0	2	3033,5377,	0,3484,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	37415663	37431557	T233137_T233137	0	+	37415663	37431557	0	5	152,619,3315,201,1453,	0,4569,9593,13503,14441,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr22	37415663	37431557	T233139_T233139	0	+	37415663	37431557	0	6	152,619,3315,806,18,1357,	0,4569,9593,13503,14441,14537,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr22	37415663	37431557	T233138_T233138	0	+	37415663	37431557	0	6	250,176,619,3315,201,1453,	0,4129,4569,9593,13503,14441,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	37415663	37431557	T233136_T233136	0	+	37415663	37431557	0	4	250,619,3315,2391,	0,4569,9593,13503,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	37427950	37431549	T233148_T233148	0	-	37427950	37431549	0	2	1357,1546,	0,2053,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr22	45272017	45397167	T235102_T235102	0	-	45272017	45397167	0	14	1038,5350,104,76,159,55,77,52,141,351,93,150,211,30001,	0,1817,9288,9725,11825,15168,17319,19894,37684,40142,44260,90877,92857,95149,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr22	45276929	45397167	T235105_T235105	0	-	45276929	45397167	0	14	2255,104,76,159,23,55,77,52,141,351,93,150,211,30001,	0,4376,4813,6913,8710,10256,12407,14982,32772,35230,39348,85965,87945,90237,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr22	47158526	47575066	T235557_T235557	0	+	47158526	47575066	0	14	219,57,341,177,71,129,63,115,110,76,128,96,2874,2651,	0,29890,30871,34814,116022,128635,132153,149443,211659,235003,274440,348877,410614,413889,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	47572029	47573513	T235562_T235562	0	-	47572029	47573513	0	2	54,1187,	0,297,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	47575285	47582971	T235564_T235564	0	-	47575285	47582971	0	2	496,5859,	0,1827,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr22	48027367	48418740	T235636_T235636	0	+	48027367	48418740	0	11	268,174,113,121,136,66,159,143,196,78,7172,	0,3561,54581,54956,55184,55522,72970,106815,382131,383949,384201,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr22	48027435	48418740	T235648_T235648	0	+	48027435	48418740	0	9	200,174,113,121,136,131,200,78,7172,	0,3493,54513,54888,55116,230305,382059,383881,384133,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	48188101	48418740	T235660_T235660	0	+	48188101	48418740	0	5	1165,196,78,1516,5530,	0,221397,223215,223467,225109,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	48408737	48418740	T235670_T235670	0	+	48408737	48418740	0	5	217,196,78,1516,5530,	0,761,2579,2831,4473,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	48409476	48418740	T235674_T235674	0	+	48409476	48418740	0	4	218,78,149,6627,	0,1840,2092,2637,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	48409476	48418740	T235675_T235675	0	+	48409476	48418740	0	4	218,78,263,6627,	0,1840,2092,2637,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	48409476	48418740	T235673_T235673	0	+	48409476	48418740	0	4	218,78,149,5771,	0,1840,2092,3493,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	48409476	48418740	T235672_T235672	0	+	48409476	48418740	0	4	218,78,195,6181,	0,1840,2092,3083,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr22	49471949	49523742	T235872_T235872	0	+	49471949	49523742	0	6	380,98,1728,105,1091,3200,	0,15084,17029,21105,21322,48593,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr22	49471949	49523742	T235873_T235873	0	+	49471949	49523742	0	6	380,9139,1728,105,1091,3200,	0,6043,17029,21105,21322,48593,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr22	49487834	49508137	T235876_T235876	0	+	49487834	49508137	0	7	238,1728,151,105,1091,243,412,	0,1144,4599,5220,5437,18842,19891,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	49487834	49508137	T235875_T235875	0	+	49487834	49508137	0	4	238,5384,243,412,	0,1144,18842,19891,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	49487834	49523742	T235878_T235878	0	+	49487834	49523742	0	5	238,1728,105,1091,3200,	0,1144,5220,5437,32708,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	49487834	49508137	T235877_T235877	0	+	49487834	49508137	0	3	238,5384,412,	0,1144,19891,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr22	49487916	49508137	T235880_T235880	0	+	49487916	49508137	0	6	156,114,3606,105,1091,412,	0,619,1062,5138,5355,19809,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	49545964	49548070	T235896_T235896	0	+	49545964	49548070	0	2	17,1866,	0,240,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	49671355	49703671	T235916_T235916	0	+	49671355	49703671	0	5	387,6291,1002,7096,1334,	0,15651,22065,23151,30982,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr22	49671355	49707893	T235917_T235917	0	+	49671355	49707893	0	6	387,6291,1002,7096,109,4022,	0,15651,22065,23151,30982,32516,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr22	49680684	49701601	T235927_T235927	0	-	49680684	49701601	0	7	455,133,258,5343,574,3854,936,	0,956,1863,7405,13113,13785,19981,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	49680684	49701674	T235930_T235930	0	-	49680684	49701674	0	5	547,133,11486,4110,1009,	0,956,1863,13529,19981,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr22	49680684	49701674	T235931_T235931	0	-	49680684	49701674	0	8	547,133,258,2059,7283,2016,968,1009,	0,956,1863,3628,6404,13785,16671,19981,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr22	49680684	49701674	T235929_T235929	0	-	49680684	49701674	0	8	455,133,258,2059,6945,158,3854,1009,	0,956,1863,3628,6404,13529,13785,19981,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr22	49680684	49695556	T235924_T235924	0	-	49680684	49695556	0	5	455,133,258,6282,1087,	0,956,1863,7405,13785,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	49686752	49701674	T235933_T235933	0	-	49686752	49701674	0	4	1002,5944,4110,1009,	0,1337,7461,13913,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	49730988	49750342	T235942_T235942	0	+	49730988	49750342	0	2	32,2569,	0,16785,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	49741289	49750342	T235943_T235943	0	+	49741289	49750342	0	2	25,2569,	0,6484,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr22	49747291	49750342	T235946_T235946	0	+	49747291	49750342	0	2	197,2569,	0,482,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	49760528	49784754	T235953_T235953	0	+	49760528	49784754	0	4	9619,46,9297,3045,	0,9791,11683,21181,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr22	49760528	49784754	T235954_T235954	0	+	49760528	49784754	0	4	8554,46,9297,3045,	0,9791,11683,21181,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	49760528	49784754	T235952_T235952	0	+	49760528	49784754	0	3	8554,9297,3045,	0,11683,21181,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr22	49913928	49999833	T235976_T235976	0	+	49913928	49999833	0	3	8289,41337,24014,	0,8428,61891,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr22	50414776	50420134	T236131_T236131	0	+	50414776	50420134	0	1	5358,	0,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr22	51021489	51052690	T236624_T236624	0	+	51021489	51052690	0	21	263,1656,509,110,110,186,72,169,143,291,106,276,94,1223,76,173,110,108,71,99,3556,	0,537,2386,3469,3782,4209,12130,16880,17149,17532,18728,20162,20565,20780,22306,22500,22763,23596,23859,27150,27645,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr22	51021489	51052690	T236626_T236626	0	+	51021489	51052690	0	22	263,1656,509,110,110,186,2003,169,143,291,106,276,94,334,58,76,173,110,108,71,99,3556,	0,537,2386,3469,3782,4209,12130,16880,17149,17532,18728,20162,20565,20780,21945,22306,22500,22763,23596,23859,27150,27645,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr22	51021489	51052690	T236623_T236623	0	+	51021489	51052690	0	21	263,1656,509,110,110,186,2003,169,674,106,276,94,334,58,76,173,110,108,71,99,3556,	0,537,2386,3469,3782,4209,12130,16880,17149,18728,20162,20565,20780,21945,22306,22500,22763,23596,23859,27150,27645,
#Boundary problem: need 18, got 17, diff 1, mapped 0.9
chr22	51021531	51052690	T236630_T236630	0	+	51021531	51052690	0	18	221,110,110,186,72,169,674,106,276,94,1223,76,173,110,108,71,99,3556,	0,3427,3740,4167,12088,16838,17107,18686,20120,20523,20738,22264,22458,22721,23554,23817,27108,27603,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr22	51021531	51052690	T236629_T236629	0	+	51021531	51052690	0	19	221,110,110,186,72,169,674,106,276,94,1223,76,173,110,108,71,99,1140,1984,	0,3427,3740,4167,12088,16838,17107,18686,20120,20523,20738,22264,22458,22721,23554,23817,27108,27603,29175,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr22	51021536	51052690	T236635_T236635	0	+	51021536	51052690	0	20	216,110,110,186,142,72,169,143,291,106,276,94,1223,76,173,110,108,71,99,3556,	0,3422,3735,4162,9375,12083,16833,17102,17485,18681,20115,20518,20733,22259,22453,22716,23549,23812,27103,27598,
#Boundary problem: need 19, got 18, diff 1, mapped 0.9
chr22	51021539	51052690	T236638_T236638	0	+	51021539	51052690	0	19	290,3042,110,186,142,72,174,674,106,276,94,1223,76,173,110,108,71,99,3556,	0,487,3732,4159,9372,12080,16825,17099,18678,20112,20515,20730,22256,22450,22713,23546,23809,27100,27595,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr22	51021539	51052690	T236639_T236639	0	+	51021539	51052690	0	20	286,3042,110,186,142,72,166,169,674,106,276,94,1223,76,173,110,108,71,99,3556,	0,487,3732,4159,9372,12080,13917,16830,17099,18678,20112,20515,20730,22256,22450,22713,23546,23809,27100,27595,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr22	51021554	51052690	T236641_T236641	0	+	51021554	51052690	0	20	271,2358,110,110,186,72,169,143,291,106,276,94,1223,76,173,110,108,71,99,3556,	0,472,3404,3717,4144,12065,16815,17084,17467,18663,20097,20500,20715,22241,22435,22698,23531,23794,27085,27580,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr22	51039127	51052690	T236645_T236645	0	+	51039127	51052690	0	13	185,106,276,94,1223,76,173,110,108,71,99,1140,1763,	0,1090,2524,2927,3142,4668,4862,5125,5958,6221,9512,10007,11800,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr22	51039181	51052690	T236647_T236647	0	+	51039181	51052690	0	14	131,106,276,94,334,58,76,173,110,108,71,99,1140,1984,	0,1036,2470,2873,3088,4253,4614,4808,5071,5904,6167,9458,9953,11525,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr22	51039182	51052690	T236648_T236648	0	+	51039182	51052690	0	12	130,106,276,94,1112,76,173,110,108,71,99,3556,	0,1035,2469,2872,3198,4613,4807,5070,5903,6166,9457,9952,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr3	89703	92802	T236738_T236738	0	+	89703	92802	0	2	670,1748,	0,1351,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr3	4924059	4993065	T237096_T237096	0	-	4924059	4993065	0	4	3413,11708,157,1822,	0,4853,18166,67184,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr3	16923651	16926521	T238798_T238798	0	-	16923651	16926521	0	4	1106,165,190,396,	0,1247,1682,2474,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr3	16923651	16926515	T238794_T238794	0	-	16923651	16926515	0	3	1106,165,1178,	0,1247,1686,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr3	16923651	16926515	T238795_T238795	0	-	16923651	16926515	0	4	1106,323,186,390,	0,1247,1686,2474,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr3	16923651	16926516	T238797_T238797	0	-	16923651	16926516	0	2	1106,1618,	0,1247,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr3	16923651	16926479	T238793_T238793	0	-	16923651	16926479	0	4	1106,107,186,354,	0,1247,1686,2474,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr3	16923651	16926516	T238796_T238796	0	-	16923651	16926516	0	3	1106,165,1183,	0,1247,1682,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr3	16923651	16926478	T238792_T238792	0	-	16923651	16926478	0	4	1106,165,186,353,	0,1247,1686,2474,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr3	16923651	16926521	T238799_T238799	0	-	16923651	16926521	0	4	1106,224,190,396,	0,1247,1682,2474,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr3	16923651	16926521	T238800_T238800	0	-	16923651	16926521	0	3	1106,165,396,	0,1247,2474,
#Boundary problem: need 57, got 56, diff 1, mapped 1.0
chr3	57327116	57535129	T244017_T244017	0	-	57327116	57535129	0	57	883,68,92,138,205,104,189,234,138,141,254,151,145,159,3116,179,300,256,167,139,152,189,120,189,84,141,184,110,120,246,240,153,173,157,120,86,122,195,201,186,244,194,135,126,136,179,92,157,189,196,159,73,190,27,82,203,5206,	0,2436,3255,3758,8646,16062,16577,17628,21405,29254,29918,30380,41376,41693,58996,63579,64263,66890,72356,74036,77977,80128,83632,87243,88301,91977,92255,95561,103307,103784,104641,105147,111453,111857,113385,116331,116709,118202,120099,121300,127346,129053,130082,131156,141986,148119,159931,160933,162626,166253,166992,167750,169400,182193,182413,201311,202807,
#Boundary problem: need 57, got 56, diff 1, mapped 1.0
chr3	57327116	57541768	T244020_T244020	0	-	57327116	57541768	0	57	883,68,92,138,205,104,189,234,138,141,254,151,145,159,3116,179,300,256,167,139,152,189,120,189,84,141,184,110,120,246,240,153,173,157,120,122,195,201,186,244,194,135,126,136,179,92,157,189,196,159,73,190,27,82,203,267,372,	0,2436,3255,3758,8646,16062,16577,17628,21405,29254,29918,30380,41376,41693,58996,63579,64263,66890,72356,74036,77977,80128,83632,87243,88301,91977,92255,95561,103307,103784,104641,105147,111453,111857,113385,116709,118202,120099,121300,127346,129053,130082,131156,141986,148119,159931,160933,162626,166253,166992,167750,169400,182193,182413,201311,202807,214280,
#Boundary problem: need 56, got 55, diff 1, mapped 1.0
chr3	57327116	57535129	T244018_T244018	0	-	57327116	57535129	0	56	883,68,92,138,205,104,189,234,138,141,254,151,145,159,3116,179,300,256,167,139,152,189,120,141,84,184,110,120,246,56,153,173,157,120,86,122,195,201,186,244,194,135,126,136,179,92,157,189,196,159,73,190,27,82,203,5206,	0,2436,3255,3758,8646,16062,16577,17628,21405,29254,29918,30380,41376,41693,58996,63579,64263,66890,72356,74036,77977,80128,83632,87243,88301,92255,95561,103307,103784,104641,105147,111453,111857,113385,116331,116709,118202,120099,121300,127346,129053,130082,131156,141986,148119,159931,160933,162626,166253,166992,167750,169400,182193,182413,201311,202807,
#Boundary problem: need 58, got 57, diff 1, mapped 1.0
chr3	57327116	57541876	T244021_T244021	0	-	57327116	57541876	0	58	883,68,92,138,205,104,189,234,138,141,254,151,145,159,3116,179,300,256,167,139,152,189,120,189,84,141,184,110,120,246,240,153,173,157,120,283,122,195,201,186,244,194,135,126,136,179,92,157,189,196,159,73,190,27,82,203,1900,480,	0,2436,3255,3758,8646,16062,16577,17628,21405,29254,29918,30380,41376,41693,58996,63579,64263,66890,72356,74036,77977,80128,83632,87243,88301,91977,92255,95561,103307,103784,104641,105147,111453,111857,113385,116331,116709,118202,120099,121300,127346,129053,130082,131156,141986,148119,159931,160933,162626,166253,166992,167750,169400,182193,182413,201311,202807,214280,
#Boundary problem: need 58, got 57, diff 1, mapped 1.0
chr3	57327116	57541644	T244019_T244019	0	-	57327116	57541644	0	58	883,68,92,138,205,104,189,234,138,141,254,151,145,159,3116,179,300,256,167,139,152,189,120,189,84,141,184,110,120,246,56,153,173,157,120,86,122,195,201,186,244,194,135,126,136,179,92,157,189,196,159,73,190,27,82,203,267,248,	0,2436,3255,3758,8646,16062,16577,17628,21405,29254,29918,30380,41376,41693,58996,63579,64263,66890,72356,74036,77977,80128,83632,87243,88301,91977,92255,95561,103307,103784,104641,105147,111453,111857,113385,116331,116709,118202,120099,121300,127346,129053,130082,131156,141986,148119,159931,160933,162626,166253,166992,167750,169400,182193,182413,201311,202807,214280,
#Boundary problem: need 58, got 57, diff 1, mapped 1.0
chr3	57327116	57541876	T244022_T244022	0	-	57327116	57541876	0	58	883,68,92,138,205,104,189,234,138,141,254,151,145,159,3116,179,300,256,167,139,152,189,120,189,84,141,184,110,120,246,240,153,173,157,120,86,122,195,201,186,244,194,135,126,136,179,92,157,189,196,159,73,190,27,82,203,1900,480,	0,2436,3255,3758,8646,16062,16577,17628,21405,29254,29918,30380,41376,41693,58996,63579,64263,66890,72356,74036,77977,80128,83632,87243,88301,91977,92255,95561,103307,103784,104641,105147,111453,111857,113385,116331,116709,118202,120099,121300,127346,129053,130082,131156,141986,148119,159931,160933,162626,166253,166992,167750,169400,182193,182413,201311,202807,214280,
#Boundary problem: need 33, got 32, diff 1, mapped 1.0
chr3	57327116	57437367	T244014_T244014	0	-	57327116	57437367	0	33	883,68,92,138,205,104,189,234,138,141,254,151,145,159,3116,179,300,256,167,139,152,189,120,189,84,141,184,110,120,246,240,153,406,	0,2436,3255,3758,8646,16062,16577,17628,21405,29254,29918,30380,41376,41693,58996,63579,64263,66890,72356,74036,77977,80128,83632,87243,88301,91977,92255,95561,103307,103784,104641,105147,109845,
#Boundary problem: need 56, got 55, diff 1, mapped 1.0
chr3	57327116	57535129	T244016_T244016	0	-	57327116	57535129	0	56	883,68,92,138,205,104,189,234,138,141,254,151,145,159,3116,179,300,256,167,139,152,189,120,189,84,141,184,110,120,246,240,153,173,157,120,122,195,201,186,244,194,135,126,136,179,92,157,189,196,159,73,190,27,82,203,5206,	0,2436,3255,3758,8646,16062,16577,17628,21405,29254,29918,30380,41376,41693,58996,63579,64263,66890,72356,74036,77977,80128,83632,87243,88301,91977,92255,95561,103307,103784,104641,105147,111453,111857,113385,116709,118202,120099,121300,127346,129053,130082,131156,141986,148119,159931,160933,162626,166253,166992,167750,169400,182193,182413,201311,202807,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr3	90478531	90504855	T246319_T246319	0	+	90478531	90504855	0	4	580,2379,10194,2875,	0,9858,12576,23449,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr3	90485762	90504855	T246320_T246320	0	+	90485762	90504855	0	2	412,16466,	0,2627,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr3	90485762	90504855	T246321_T246321	0	+	90485762	90504855	0	3	412,5404,1551,	0,2627,17542,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr3	90485762	90504855	T246322_T246322	0	+	90485762	90504855	0	3	412,12912,2875,	0,2627,16218,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr3	174901685	174992095	T254879_T254879	0	-	174901685	174992095	0	5	303,180,27131,89,196,	0,4020,31403,87160,90214,
#Partially deleted in new
chr3	195231565	195237614	T257900_T257900	0	-	195231565	195237614	0	1	6049,	0,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr3	195270195	195282526	T257905_T257905	0	+	195270195	195282526	0	4	592,361,2253,1107,	0,786,1289,11224,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr3	195270195	195274276	T257904_T257904	0	+	195270195	195274276	0	3	592,361,2792,	0,786,1289,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr4	31902	52081	T258778_T258778	0	-	31902	52081	0	3	403,17246,596,	0,2182,19583,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr4	31902	52081	T258779_T258779	0	-	31902	52081	0	3	403,17246,660,	0,2182,19519,
#Partially deleted in new
chr4	124385	131334	T258794_T258794	0	+	124385	131334	0	2	170,4603,	0,2346,
#Partially deleted in new
chr4	124385	158509	T258795_T258795	0	+	124385	158509	0	3	793,280,3808,	0,2346,30316,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr4	124385	173436	T258797_T258797	0	+	124385	173436	0	4	170,280,11996,3660,	0,2346,30316,45391,
#Partially deleted in new
chr4	124385	131334	T258793_T258793	0	+	124385	131334	0	2	793,4603,	0,2346,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr4	127432	140489	T258801_T258801	0	-	127432	140489	0	2	2216,10347,	0,2710,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr4	75589858	75600104	T266574_T266574	0	+	75589858	75600104	0	4	113,691,32,1867,	0,261,3276,8379,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr4	89332634	89378201	T267939_T267939	0	-	89332634	89378201	0	5	640,107,139,73,1832,	0,7819,8091,8873,43735,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	89332634	89378168	T267937_T267937	0	-	89332634	89378168	0	6	640,107,139,73,58,1799,	0,7819,8091,8873,30982,43735,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	89332634	89378201	T267938_T267938	0	-	89332634	89378201	0	6	640,107,139,73,82,262,	0,7819,8091,8873,30958,45305,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	89336343	89378168	T267945_T267945	0	-	89336343	89378168	0	6	888,107,126,73,58,1799,	0,4110,4382,5164,27273,40026,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	89336343	89378168	T267946_T267946	0	-	89336343	89378168	0	6	888,107,139,73,58,1799,	0,4110,4382,5164,27273,40026,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	148490624	148518351	T272658_T272658	0	+	148490624	148518351	0	6	586,120,91,123,125,2935,	0,3208,3743,5970,9258,24792,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	148491772	148518351	T272660_T272660	0	+	148491772	148518351	0	6	310,120,91,123,125,2935,	0,2060,2595,4822,8110,23644,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr4	148499302	148518351	T272662_T272662	0	+	148499302	148518351	0	2	705,2935,	0,16114,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr4	185279511	185303721	T275526_T275526	0	-	185279511	185303721	0	10	1543,1151,2636,2481,3173,139,142,104,431,434,	0,1681,4652,7467,10055,13311,13981,18083,20341,23776,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr4	185279511	185300283	T275523_T275523	0	-	185279511	185300283	0	8	1543,1151,2636,123,3395,433,104,79,	0,1681,4652,7467,10055,13690,18083,20693,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr4	185279511	185303721	T275531_T275531	0	-	185279511	185303721	0	7	1543,1151,2636,5761,812,2689,434,	0,1681,4652,7467,13311,18083,23776,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr4	185279511	185303721	T275529_T275529	0	-	185279511	185303721	0	8	1543,1151,2636,5761,139,142,104,434,	0,1681,4652,7467,13311,13981,18083,23776,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr4	185279511	185303526	T275524_T275524	0	-	185279511	185303526	0	9	1543,1151,2633,2481,55,142,104,2128,239,	0,1681,4652,7467,10055,13981,18083,18644,23776,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr4	185279511	185303721	T275527_T275527	0	-	185279511	185303721	0	9	1543,1151,2636,5761,139,142,104,2128,434,	0,1681,4652,7467,13311,13981,18083,18644,23776,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr4	185279511	185303671	T275525_T275525	0	-	185279511	185303671	0	9	1543,1151,2636,5761,139,142,149,2128,384,	0,1681,4652,7467,13311,13981,18083,18644,23776,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr4	185279511	185303721	T275528_T275528	0	-	185279511	185303721	0	9	1543,1151,2636,5761,139,142,104,165,434,	0,1681,4652,7467,13311,13981,18083,20607,23776,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr4	185279511	185303721	T275530_T275530	0	-	185279511	185303721	0	9	1543,1151,2636,5761,139,142,104,792,434,	0,1681,4652,7467,13311,13981,18083,19980,23776,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185282540	185303721	T275547_T275547	0	-	185282540	185303721	0	6	4259,5056,139,142,104,434,	0,4438,10282,10952,15054,20747,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr4	185282540	185303721	T275546_T275546	0	-	185282540	185303721	0	8	4259,123,55,139,142,104,165,434,	0,4438,7026,10282,10952,15054,17578,20747,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185282540	185303721	T275544_T275544	0	-	185282540	185303721	0	6	4259,123,2468,812,104,434,	0,4438,7026,10282,15054,20747,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr4	185282540	185303774	T275562_T275562	0	-	185282540	185303774	0	8	4259,2481,2468,139,142,104,165,487,	0,4438,7026,10282,10952,15054,17578,20747,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185282540	185303721	T275536_T275536	0	-	185282540	185303721	0	6	4259,123,3395,142,104,434,	0,4438,7026,10952,15054,20747,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr4	185282540	185303721	T275555_T275555	0	-	185282540	185303721	0	7	4259,123,2468,166,142,104,434,	0,4438,7026,10255,10952,15054,20747,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr4	185282540	185303721	T275537_T275537	0	-	185282540	185303721	0	4	4259,6656,2689,434,	0,4438,15054,20747,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr4	185282540	185303721	T275553_T275553	0	-	185282540	185303721	0	8	4259,123,2468,337,145,104,2128,434,	0,4438,7026,10084,10949,15054,15615,20747,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185282540	185303538	T275533_T275533	0	-	185282540	185303538	0	6	4259,123,142,104,792,251,	0,4438,10952,15054,16951,20747,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185282540	185303721	T275540_T275540	0	-	185282540	185303721	0	6	4259,5056,812,104,165,434,	0,4438,10282,15054,17578,20747,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr4	185282540	185303721	T275556_T275556	0	-	185282540	185303721	0	7	4259,123,55,812,377,2128,434,	0,4438,7026,10282,15054,15615,20747,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr4	185282540	185303721	T275549_T275549	0	-	185282540	185303721	0	7	4259,123,55,135,146,104,434,	0,4438,7026,10282,10948,15054,20747,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr4	185282540	185303721	T275539_T275539	0	-	185282540	185303721	0	5	4259,5983,142,2689,434,	0,4438,10952,15054,20747,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr4	185282540	185303721	T275542_T275542	0	-	185282540	185303721	0	4	4259,6656,104,434,	0,4438,15054,20747,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr4	185282540	185303774	T275560_T275560	0	-	185282540	185303774	0	8	4259,123,2468,139,365,104,2128,487,	0,4438,7026,10282,10729,15054,15615,20747,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185282540	185303721	T275538_T275538	0	-	185282540	185303721	0	6	4259,123,3395,142,2689,434,	0,4438,7026,10952,15054,20747,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr4	185282540	185303721	T275554_T275554	0	-	185282540	185303721	0	7	4259,123,880,139,142,104,434,	0,4438,7026,10282,10952,15054,20747,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr4	185282540	185303721	T275541_T275541	0	-	185282540	185303721	0	7	4259,123,55,812,104,165,434,	0,4438,7026,10282,15054,17578,20747,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr4	185282540	185303671	T275535_T275535	0	-	185282540	185303671	0	7	4259,5056,139,142,104,2128,384,	0,4438,10282,10952,15054,15615,20747,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185282540	185303721	T275558_T275558	0	-	185282540	185303721	0	6	4259,123,4068,104,165,434,	0,4438,7026,15054,17578,20747,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185282540	185303774	T275561_T275561	0	-	185282540	185303774	0	6	4259,123,139,142,104,487,	0,4438,10282,10952,15054,20747,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr4	185282540	185303721	T275551_T275551	0	-	185282540	185303721	0	7	4259,2481,2468,337,145,104,434,	0,4438,7026,10084,10949,15054,20747,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr4	185282540	185291160	T275532_T275532	0	-	185282540	185291160	0	4	4259,123,55,829,	0,4438,7026,7791,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr4	185282540	185303721	T275545_T275545	0	-	185282540	185303721	0	7	4259,2481,2468,139,142,2689,434,	0,4438,7026,10282,10952,15054,20747,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr4	185282540	185303721	T275548_T275548	0	-	185282540	185303721	0	8	4259,123,880,139,142,104,165,434,	0,4438,7026,10282,10952,15054,17578,20747,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr4	185282540	185303611	T275534_T275534	0	-	185282540	185303611	0	7	4259,123,55,812,104,792,324,	0,4438,7026,10282,15054,16951,20747,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr4	185282540	185303721	T275559_T275559	0	-	185282540	185303721	0	5	4259,123,4068,2689,434,	0,4438,7026,15054,20747,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185282540	185303721	T275550_T275550	0	-	185282540	185303721	0	6	4259,123,142,104,165,434,	0,4438,10952,15054,17578,20747,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr4	185282540	185303721	T275557_T275557	0	-	185282540	185303721	0	6	4259,123,142,377,2128,434,	0,4438,10952,15054,15615,20747,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr4	185282540	185303721	T275552_T275552	0	-	185282540	185303721	0	7	4259,123,139,142,104,165,434,	0,4438,10282,10952,15054,17578,20747,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr4	185282540	185303721	T275543_T275543	0	-	185282540	185303721	0	5	4259,5056,812,104,434,	0,4438,10282,15054,20747,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	24555	35598	T276839_T276839	0	+	24555	35598	0	4	1596,65,77,2943,	0,4907,6155,8100,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr5	24884	35598	T276840_T276840	0	+	24884	35598	0	2	266,10369,	0,345,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr5	24884	35598	T276841_T276841	0	+	24884	35598	0	3	266,4298,4888,	0,345,5826,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr5	29296	35598	T276844_T276844	0	+	29296	35598	0	3	231,77,1769,	0,1414,4533,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr5	29465	35598	T276846_T276846	0	+	29465	35598	0	3	62,289,2943,	0,1245,3190,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	72689556	72744711	T284198_T284198	0	-	72689556	72744711	0	4	232,374,364,1951,	0,12715,51084,53204,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr5	72739910	72744740	T284203_T284203	0	-	72739910	72744740	0	2	1094,1980,	0,2850,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	140474224	140575217	T290293_T290293	0	+	140474224	140575217	0	4	6044,23041,13473,7107,	0,40428,79230,93886,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr5	140552186	140575217	T290306_T290306	0	+	140552186	140575217	0	2	9983,12075,	0,10956,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr5	140552186	140608818	T290307_T290307	0	+	140552186	140608818	0	3	14741,6563,20905,	0,15666,35727,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr5	140579151	140608818	T290314_T290314	0	+	140579151	140608818	0	3	231,4916,20905,	0,928,8762,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr5	141164097	141188077	T290415_T290415	0	+	141164097	141188077	0	5	434,131,111,503,3343,	0,3898,5656,19907,20637,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr5	141164097	141188077	T290414_T290414	0	+	141164097	141188077	0	3	434,111,4073,	0,5656,19907,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr5	141164097	141188077	T290413_T290413	0	+	141164097	141188077	0	4	434,111,503,3343,	0,5656,19907,20637,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr6	904220	906356	T295605_T295605	0	-	904220	906356	0	1	2136,	0,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr6	12288209	12335167	T297560_T297560	0	+	12288209	12335167	0	11	98,123,1909,169,156,144,1230,17096,65,58,403,	0,396,808,4364,5964,6284,7985,9401,34353,34630,46555,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr6	12288209	12335167	T297561_T297561	0	+	12288209	12335167	0	11	98,123,1909,169,156,144,1230,16851,107,58,403,	0,396,808,4364,5964,6284,7985,9401,34311,34630,46555,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr6	12288209	12335167	T297559_T297559	0	+	12288209	12335167	0	11	98,123,1909,169,156,144,1230,17096,107,58,403,	0,396,808,4364,5964,6284,7985,9401,34311,34630,46555,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr6	12288209	12335167	T297562_T297562	0	+	12288209	12335167	0	11	98,123,65,169,156,144,1230,16851,107,58,403,	0,396,2652,4364,5964,6284,7985,9401,34311,34630,46555,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	12296664	12301668	T297565_T297565	0	-	12296664	12301668	0	3	58,692,1957,	0,1193,3047,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr6	12297415	12302564	T297567_T297567	0	-	12297415	12302564	0	2	1134,3199,	0,1950,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr6	12297415	12302564	T297566_T297566	0	-	12297415	12302564	0	2	1134,2853,	0,2296,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr6	12297415	12314520	T297571_T297571	0	-	12297415	12314520	0	5	1134,2303,58,105,232,	0,1950,13997,16172,16873,
#Partially deleted in new
chr6	26671449	26797109	T299358_T299358	0	-	26671449	26797109	0	3	11700,2169,3929,	0,11975,121731,
#Partially deleted in new
chr6	26671449	26797109	T299356_T299356	0	-	26671449	26797109	0	2	14176,3897,	0,121763,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr6	26671449	26796493	T299354_T299354	0	-	26671449	26796493	0	2	10856,30,	0,125014,
#Partially deleted in new
chr6	26671449	26797109	T299357_T299357	0	-	26671449	26797109	0	2	4462,3401,	0,122259,
#Partially deleted in new
chr6	26671449	26797109	T299359_T299359	0	-	26671449	26797109	0	2	11800,1273,	0,124387,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	26671449	26805271	T299361_T299361	0	-	26671449	26805271	0	3	4357,2388,5785,	0,122382,128037,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr6	26671449	26797109	T299355_T299355	0	-	26671449	26797109	0	2	13497,3278,	0,122382,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr6	26671449	26797109	T299360_T299360	0	-	26671449	26797109	0	2	13065,2795,	0,122865,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	26671449	26805271	T299362_T299362	0	-	26671449	26805271	0	3	14144,3039,5785,	0,121731,128037,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr6	26700195	26746442	T299380_T299380	0	-	26700195	26746442	0	4	1595,182,193,42,	0,5946,20267,46205,
#Partially deleted in new
chr6	26731591	26758261	T299384_T299384	0	-	26731591	26758261	0	3	824,3512,167,	0,22808,26503,
#Partially deleted in new
chr6	26731591	26758291	T299385_T299385	0	-	26731591	26758291	0	4	824,2874,91,197,	0,22808,26229,26503,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	26751720	26754852	T299387_T299387	0	+	26751720	26754852	0	3	91,125,2122,	0,464,1010,
#Partially deleted in new
chr6	26755665	26767961	T299389_T299389	0	-	26755665	26767961	0	2	438,25,	0,12271,
#Partially deleted in new
chr6	26798035	26805029	T299391_T299391	0	-	26798035	26805029	0	1	6994,	0,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	58138638	58148777	T305700_T305700	0	-	58138638	58148777	0	3	3211,589,2254,	0,3631,7885,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr6	58138638	58147926	T305690_T305690	0	-	58138638	58147926	0	4	3211,97,91,763,	0,3631,4129,8525,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr6	58138638	58148777	T305694_T305694	0	-	58138638	58148777	0	6	3211,125,91,2222,674,1614,	0,3631,4129,5173,7471,8525,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr6	58138638	58148777	T305695_T305695	0	-	58138638	58148777	0	4	3211,125,91,1614,	0,3631,4129,8525,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr6	58138638	58148777	T305698_T305698	0	-	58138638	58148777	0	2	4220,1614,	0,8525,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr6	58138638	58148841	T305701_T305701	0	-	58138638	58148841	0	4	3211,765,994,64,	0,3455,8525,10139,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr6	58138638	58148777	T305697_T305697	0	-	58138638	58148777	0	6	3211,125,91,111,260,1614,	0,3631,4129,5173,7885,8525,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	58138638	58148777	T305693_T305693	0	-	58138638	58148777	0	3	4220,297,1614,	0,7848,8525,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr6	58138638	58148777	T305692_T305692	0	-	58138638	58148777	0	4	3211,125,91,2291,	0,3631,4129,7848,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr6	58138638	58148841	T305702_T305702	0	-	58138638	58148841	0	5	3211,125,270,994,64,	0,3631,3950,8525,10139,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr6	58138638	58148777	T305699_T305699	0	-	58138638	58148777	0	4	3211,125,270,1614,	0,3631,3950,8525,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr6	58138638	58148777	T305691_T305691	0	-	58138638	58148777	0	5	3211,589,2222,674,1614,	0,3631,5173,7471,8525,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr6	58138638	58147762	T305688_T305688	0	-	58138638	58147762	0	4	3211,589,111,599,	0,3631,5173,8525,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr6	58138638	58147888	T305689_T305689	0	-	58138638	58147888	0	2	4220,1402,	0,7848,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	58138638	58148777	T305696_T305696	0	-	58138638	58148777	0	3	3211,589,2291,	0,3631,7848,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	58143811	58147926	T305712_T305712	0	-	58143811	58147926	0	3	111,297,763,	0,2675,3352,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr6	64408917	64421080	T305949_T305949	0	-	64408917	64421080	0	3	926,45,3889,	0,4503,8274,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr6	107306500	107309337	T309061_T309061	0	+	107306500	107309337	0	2	517,1656,	0,1181,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr6	114205900	114208243	T310007_T310007	0	+	114205900	114208243	0	2	478,1755,	0,588,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr6	165202524	165205707	T315052_T315052	0	+	165202524	165205707	0	2	731,1920,	0,1263,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr6	167932192	167942075	T315462_T315462	0	-	167932192	167942075	0	1	9883,	0,
#Partially deleted in new
chr6	169089034	169118669	T315863_T315863	0	+	169089034	169118669	0	6	6304,116,820,225,153,1949,	0,8537,20899,22766,23400,27686,
#Partially deleted in new
chr6	169089034	169118669	T315862_T315862	0	+	169089034	169118669	0	8	6304,116,119,196,340,225,153,1949,	0,8537,19851,20899,21379,22766,23400,27686,
#Partially deleted in new
chr6	169089034	169098488	T315859_T315859	0	+	169089034	169098488	0	2	6304,917,	0,8537,
#Partially deleted in new
chr6	169089034	169118669	T315861_T315861	0	+	169089034	169118669	0	7	6091,63,97,820,225,153,1949,	0,6241,8537,20899,22766,23400,27686,
#Partially deleted in new
chr6	169089034	169118669	T315860_T315860	0	+	169089034	169118669	0	7	6304,116,820,225,153,104,1214,	0,8537,20899,22766,23400,27686,28421,
#Partially deleted in new
chr6	169089034	169118669	T315864_T315864	0	+	169089034	169118669	0	7	6304,116,119,820,225,153,1949,	0,8537,19851,20899,22766,23400,27686,
#Boundary problem: need 5, got 2, diff 3, mapped 0.4
chr6	169107597	169118669	T315865_T315865	0	+	169107597	169118669	0	5	1407,820,1081,153,1949,	0,2336,3347,4837,9123,
#Boundary problem: need 5, got 2, diff 3, mapped 0.4
chr6	169107846	169118669	T315866_T315866	0	+	169107846	169118669	0	5	1158,820,225,153,1949,	0,2087,3954,4588,8874,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr6	169109562	169118669	T315867_T315867	0	+	169109562	169118669	0	5	101,820,1081,153,1949,	0,371,1382,2872,7158,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr6	169109562	169118669	T315868_T315868	0	+	169109562	169118669	0	5	101,820,225,153,1949,	0,371,2238,2872,7158,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr6	169109616	169118669	T315869_T315869	0	+	169109616	169118669	0	5	47,717,214,153,1949,	0,317,2195,2818,7104,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr6	169109616	169118669	T315870_T315870	0	+	169109616	169118669	0	5	47,2092,153,104,1214,	0,317,2818,7104,7839,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr6	169109933	169118669	T315871_T315871	0	+	169109933	169118669	0	5	196,340,1081,153,1949,	0,480,1011,2501,6787,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	52723994	52737950	T324117_T324117	0	+	52723994	52737950	0	3	182,134,2920,	0,10469,11036,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr7	52726769	52739115	T324118_T324118	0	-	52726769	52739115	0	4	395,248,1461,717,	0,7927,8820,11629,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	52726769	52739115	T324119_T324119	0	-	52726769	52739115	0	3	395,2354,717,	0,7927,11629,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	52729828	52737950	T324121_T324121	0	+	52729828	52737950	0	3	3589,134,2920,	0,4635,5202,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	52729828	52737950	T324120_T324120	0	+	52729828	52737950	0	2	3589,3487,	0,4635,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	52733055	52739115	T324123_T324123	0	-	52733055	52739115	0	3	1889,1461,717,	0,2534,5343,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	57469588	57471840	T324799_T324799	0	-	57469588	57471840	0	2	1253,81,	0,2171,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	57469606	57482632	T324800_T324800	0	+	57469606	57482632	0	6	2469,97,68,126,140,4046,	0,5173,5582,6375,8733,8980,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	57471880	57482632	T324802_T324802	0	+	57471880	57482632	0	6	821,97,76,126,86,4046,	0,2899,3308,4101,6513,6706,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	57471880	57482632	T324801_T324801	0	+	57471880	57482632	0	6	821,97,76,126,140,4046,	0,2899,3308,4101,6459,6706,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	57471899	57482632	T324804_T324804	0	+	57471899	57482632	0	6	176,97,76,126,140,4046,	0,2880,3289,4082,6440,6687,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr7	57472075	57482632	T324811_T324811	0	+	57472075	57482632	0	5	56,424,126,140,4046,	0,202,3906,6264,6511,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr7	57472140	57482632	T324815_T324815	0	+	57472140	57482632	0	5	1792,97,126,140,4046,	0,2639,3841,6199,6446,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	57472140	57482632	T324814_T324814	0	+	57472140	57482632	0	6	1792,97,76,126,140,4046,	0,2639,3048,3841,6199,6446,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	57472140	57482632	T324813_T324813	0	+	57472140	57482632	0	6	1792,97,68,126,140,4046,	0,2639,3048,3841,6199,6446,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr7	57472427	57482632	T324820_T324820	0	+	57472427	57482632	0	7	274,188,97,80,126,140,4046,	0,1317,2352,2761,3554,5912,6159,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	57472427	57482632	T324819_T324819	0	+	57472427	57482632	0	6	274,97,68,126,140,4046,	0,2352,2761,3554,5912,6159,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	57472427	57482632	T324823_T324823	0	+	57472427	57482632	0	6	1766,97,68,126,140,4046,	0,2352,2761,3554,5912,6159,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	57472427	57482632	T324822_T324822	0	+	57472427	57482632	0	6	1073,97,76,126,140,4046,	0,2352,2761,3554,5912,6159,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	61813790	61819640	T324891_T324891	0	-	61813790	61819640	0	3	2712,212,67,	0,4081,5783,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	61813790	61820475	T324892_T324892	0	-	61813790	61820475	0	2	4293,902,	0,5783,
#Partially deleted in new
chr7	61813790	61823571	T324897_T324897	0	-	61813790	61823571	0	3	3243,356,128,	0,8484,9653,
#Partially deleted in new
chr7	61813790	61823571	T324896_T324896	0	-	61813790	61823571	0	3	4293,356,128,	0,8484,9653,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	61813790	61820475	T324893_T324893	0	-	61813790	61820475	0	2	1899,902,	0,5783,
#Partially deleted in new
chr7	61813790	61822710	T324894_T324894	0	-	61813790	61822710	0	4	2712,212,183,33,	0,4081,8484,8887,
#Partially deleted in new
chr7	61813790	61822710	T324895_T324895	0	-	61813790	61822710	0	3	4293,183,33,	0,8484,8887,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	65198906	65201832	T325497_T325497	0	+	65198906	65201832	0	2	546,1216,	0,1710,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chr7	74266541	74293564	T326532_T326532	0	+	74266541	74293564	0	3	17223,5694,3081,	0,17876,23942,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr7	74266541	74299173	T326533_T326533	0	+	74266541	74299173	0	5	17223,6652,2385,2996,163,	0,17876,24638,28882,32469,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	74281439	74284806	T326536_T326536	0	+	74281439	74284806	0	2	2320,394,	0,2973,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr7	74293675	74299173	T326543_T326543	0	+	74293675	74299173	0	4	94,194,3061,163,	0,553,1683,5335,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	74293675	74299173	T326544_T326544	0	+	74293675	74299173	0	3	1638,3014,113,	0,1770,5385,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	74293675	74297914	T326541_T326541	0	+	74293675	74297914	0	3	94,2849,417,	0,553,3822,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	74293675	74299173	T326542_T326542	0	+	74293675	74299173	0	3	94,4231,113,	0,553,5385,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	74360048	74362458	T326607_T326607	0	+	74360048	74362458	0	2	1215,949,	0,1461,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	74854764	74864851	T326656_T326656	0	+	74854764	74864851	0	2	853,2552,	0,7535,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	74854764	74857238	T326652_T326652	0	+	74854764	74857238	0	2	922,1261,	0,1213,
#Partially deleted in new
chr7	74854764	74857238	T326654_T326654	0	+	74854764	74857238	0	1	2474,	0,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	74854764	74864851	T326657_T326657	0	+	74854764	74864851	0	3	853,638,1197,	0,7535,8890,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr7	74856143	74857951	T326660_T326660	0	-	74856143	74857951	0	1	1808,	0,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	74856143	74857951	T326659_T326659	0	-	74856143	74857951	0	2	586,710,	0,1098,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	74861328	74864851	T326661_T326661	0	+	74861328	74864851	0	2	1609,1197,	0,2326,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr7	74861328	74864851	T326662_T326662	0	+	74861328	74864851	0	1	3523,	0,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	74861657	74864851	T326663_T326663	0	+	74861657	74864851	0	2	1280,1416,	0,1778,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	75209174	75213434	T326799_T326799	0	+	75209174	75213434	0	2	479,508,	0,3752,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr7	100361670	100400260	T329824_T329824	0	+	100361670	100400260	0	26	149,203,142,248,181,112,95,177,209,144,218,165,125,305,212,145,248,130,172,183,140,439,141,103,47,4932,	0,1304,2477,2962,3783,4562,5832,7796,9237,9673,11279,11620,12391,15397,20574,21948,23840,25169,26893,27917,28356,29771,31147,33314,33528,33658,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr7	100361670	100400260	T329822_T329822	0	+	100361670	100400260	0	23	149,203,142,248,181,112,95,209,144,248,165,125,212,145,248,130,172,183,140,141,103,47,4932,	0,1304,2477,2962,3783,4562,5832,9237,9673,11279,11620,12391,20574,21948,23840,25169,26893,27917,28356,31147,33314,33528,33658,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr7	100361670	100391547	T329821_T329821	0	+	100361670	100391547	0	21	149,203,142,248,181,112,95,177,209,144,248,165,125,305,212,145,248,130,172,140,106,	0,1304,2477,2962,3783,4562,5832,7796,9237,9673,11279,11620,12391,15397,20574,21948,23840,25169,26893,28356,29771,
#Boundary problem: need 26, got 25, diff 1, mapped 1.0
chr7	100361670	100400260	T329823_T329823	0	+	100361670	100400260	0	26	149,203,142,248,181,112,95,177,209,144,218,165,125,305,212,145,248,130,172,183,140,139,141,103,47,4932,	0,1304,2477,2962,3783,4562,5832,7796,9237,9673,11279,11620,12391,15397,20574,21948,23840,25169,26893,27917,28356,30071,31147,33314,33528,33658,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr7	100362664	100400260	T329828_T329828	0	+	100362664	100400260	0	23	513,142,248,181,112,95,177,209,144,248,165,125,305,212,145,248,130,172,140,141,103,47,4932,	0,1483,1968,2789,3568,4838,6802,8243,8679,10285,10626,11397,14403,19580,20954,22846,24175,25899,27362,30153,32320,32534,32664,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr7	100362664	100400260	T329827_T329827	0	+	100362664	100400260	0	23	513,142,248,181,112,95,177,209,144,248,165,125,194,212,145,248,130,172,140,141,103,47,4932,	0,1483,1968,2789,3568,4838,6802,8243,8679,10285,10626,11397,14403,19580,20954,22846,24175,25899,27362,30153,32320,32534,32664,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr7	100362664	100400260	T329825_T329825	0	+	100362664	100400260	0	24	513,142,248,181,112,95,177,209,144,248,165,125,305,212,145,248,130,172,183,140,141,103,47,4932,	0,1483,1968,2789,3568,4838,6802,8243,8679,10285,10626,11397,14403,19580,20954,22846,24175,25899,26923,27362,30153,32320,32534,32664,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr7	100362664	100400260	T329829_T329829	0	+	100362664	100400260	0	24	513,142,248,181,112,95,177,209,144,248,165,125,194,212,145,248,130,172,88,140,141,103,47,4932,	0,1483,1968,2789,3568,4838,6802,8243,8679,10285,10626,11397,14403,19580,20954,22846,24175,25899,26923,27362,30153,32320,32534,32664,
#Boundary problem: need 24, got 23, diff 1, mapped 1.0
chr7	100362664	100400260	T329826_T329826	0	+	100362664	100400260	0	24	513,142,248,181,112,95,177,209,144,248,165,125,194,212,145,248,130,172,183,140,141,103,47,4932,	0,1483,1968,2789,3568,4838,6802,8243,8679,10285,10626,11397,14403,19580,20954,22846,24175,25899,26923,27362,30153,32320,32534,32664,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr7	100362817	100377261	T329830_T329830	0	+	100362817	100377261	0	12	360,142,248,181,112,95,209,144,248,165,125,194,	0,1330,1815,2636,3415,4685,8090,8526,10132,10473,11244,14250,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr7	100486237	100494594	T329949_T329949	0	-	100486237	100494594	0	5	247,1298,170,1922,1172,	0,421,2552,3717,7185,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	100486237	100494586	T329946_T329946	0	-	100486237	100494586	0	6	247,2051,170,485,1088,413,	0,421,2552,3717,4548,7936,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	100486237	100525959	T329954_T329954	0	-	100486237	100525959	0	6	247,2051,170,310,1088,32537,	0,421,2552,3717,4548,7185,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	100486237	100494594	T329948_T329948	0	-	100486237	100494594	0	6	247,1298,170,310,1088,1172,	0,421,2552,3717,4548,7185,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr7	100486237	100494275	T329945_T329945	0	-	100486237	100494275	0	5	247,2051,170,1922,596,	0,421,2552,3717,7442,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	100486237	100525959	T329953_T329953	0	-	100486237	100525959	0	6	247,1298,170,485,1088,32537,	0,421,2552,3717,4548,7185,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	100486237	100525959	T329951_T329951	0	-	100486237	100525959	0	6	247,2051,170,485,1091,32537,	0,421,2552,3717,4548,7185,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	100486237	100525959	T329952_T329952	0	-	100486237	100525959	0	6	247,2051,170,221,1088,32537,	0,421,2552,3717,4548,7185,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr7	100486237	100494600	T329950_T329950	0	-	100486237	100494600	0	7	247,2051,170,485,1088,394,427,	0,421,2552,3717,4548,7442,7936,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr7	100486237	100494589	T329947_T329947	0	-	100486237	100494589	0	6	247,1298,170,485,1088,416,	0,421,2552,3717,4548,7936,
#Partially deleted in new
chr7	100538028	100613813	T329966_T329966	0	-	100538028	100613813	0	10	1936,186,118,113,1131,1095,316,77,972,1067,	0,6168,14899,15214,68154,69742,71493,72465,73126,74718,
#Partially deleted in new
chr7	100538028	100556037	T329965_T329965	0	-	100538028	100556037	0	4	1936,186,1691,108,	0,6168,16067,17901,
#Partially deleted in new
chr7	100550807	100551062	T329985_T329985	0	-	100550807	100551062	0	1	255,	0,
#Partially deleted in new
chr7	100553003	100556039	T329986_T329986	0	-	100553003	100556039	0	3	42,2544,110,	0,239,2926,
#Partially deleted in new
chr7	100606050	100609095	T329990_T329990	0	-	100606050	100609095	0	2	1456,1325,	0,1720,
#Partially deleted in new
chr7	100606050	100609602	T329992_T329992	0	-	100606050	100609602	0	3	1263,1095,42,	0,1720,3510,
#Partially deleted in new
chr7	100606050	100609095	T329989_T329989	0	-	100606050	100609095	0	2	1263,1325,	0,1720,
#Partially deleted in new
chr7	100606050	100609602	T329991_T329991	0	-	100606050	100609602	0	4	1215,122,1095,81,	0,1334,1720,3471,
#Partially deleted in new
chr7	100606050	100613813	T329995_T329995	0	-	100606050	100613813	0	5	2815,316,77,801,1067,	0,3471,4443,5275,6696,
#Partially deleted in new
chr7	100606050	100608865	T329987_T329987	0	-	100606050	100608865	0	3	1456,228,399,	0,1720,2416,
#Partially deleted in new
chr7	100606050	100610344	T329993_T329993	0	-	100606050	100610344	0	2	2815,784,	0,3510,
#Partially deleted in new
chr7	100606050	100610344	T329994_T329994	0	-	100606050	100610344	0	3	1215,1481,823,	0,1334,3471,
#Partially deleted in new
chr7	100606050	100609095	T329988_T329988	0	-	100606050	100609095	0	1	3045,	0,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr7	100992298	101203285	T330131_T330131	0	+	100992298	101203285	0	14	864,145,123,104,62,157,99,153,84,53,36,51,85,2635,	0,13504,70959,98666,184064,190875,194980,196320,198138,200153,202090,204308,206769,208352,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr7	100992775	101203285	T330133_T330133	0	+	100992775	101203285	0	14	387,669,123,104,62,157,99,153,84,53,36,51,85,2635,	0,13027,70482,98189,183587,190398,194503,195843,197661,199676,201613,203831,206292,207875,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr7	100992775	101203285	T330132_T330132	0	+	100992775	101203285	0	14	387,669,123,98,62,157,99,153,84,53,36,51,85,2635,	0,13027,70482,98195,183587,190398,194503,195843,197661,199676,201613,203831,206292,207875,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr7	101005437	101203285	T330141_T330141	0	+	101005437	101203285	0	13	1034,123,98,62,157,99,153,84,53,36,51,85,2635,	0,57820,85533,170925,177736,181841,183181,184999,187014,188951,191169,193630,195213,
#Boundary problem: need 14, got 13, diff 1, mapped 0.9
chr7	101005437	101203285	T330140_T330140	0	+	101005437	101203285	0	14	274,669,123,104,62,157,99,153,84,53,36,51,85,2635,	0,365,57820,85527,170925,177736,181841,183181,184999,187014,188951,191169,193630,195213,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr7	101005540	101203285	T330142_T330142	0	+	101005540	101203285	0	13	407,123,104,62,157,99,153,84,53,36,51,85,2635,	0,57717,85424,170822,177633,181738,183078,184896,186911,188848,191066,193527,195110,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr7	110005160	110230616	T331167_T331167	0	-	110005160	110230616	0	5	187,96,55,106,520,	0,67707,145956,160352,224936,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr7	110070948	110230558	T331179_T331179	0	-	110070948	110230558	0	5	1419,96,55,106,462,	0,1919,80168,94564,159148,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr7	110070948	110230534	T331178_T331178	0	-	110070948	110230534	0	4	1419,96,106,438,	0,1919,94564,159148,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr7	110138850	110230569	T331181_T331181	0	-	110138850	110230569	0	4	88,55,106,473,	0,12266,26662,91246,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr7	128747838	128824214	T333050_T333050	0	+	128747838	128824214	0	11	34,284,58,128,75,96,129,162,3849,3921,29,	0,36800,53681,54396,54835,56476,58780,59401,59775,68633,76347,
#Boundary problem: need 10, got 9, diff 1, mapped 0.9
chr7	128747838	128813104	T333049_T333049	0	+	128747838	128813104	0	10	34,284,58,128,75,96,129,162,3849,1194,	0,36800,53681,54396,54835,56476,58780,59401,59775,64072,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr7	130147968	130154525	T333272_T333272	0	+	130147968	130154525	0	1	6557,	0,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	130148570	130154525	T333273_T333273	0	+	130148570	130154525	0	2	1410,3507,	0,2448,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	130153308	130154525	T333274_T333274	0	+	130153308	130154525	0	2	85,692,	0,525,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	132913490	132930672	T333572_T333572	0	+	132913490	132930672	0	3	939,100,11938,	0,1973,5244,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	142021571	142028151	T334606_T334606	0	-	142021571	142028151	0	2	497,5124,	0,1456,
#Partially deleted in new
chr7	142460855	142478272	T334706_T334706	0	-	142460855	142478272	0	3	2258,2419,1489,	0,2936,15928,
#Partially deleted in new
chr7	142471727	142478272	T334714_T334714	0	-	142471727	142478272	0	3	491,137,5619,	0,692,926,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr7	142471727	142475383	T334710_T334710	0	-	142471727	142475383	0	4	491,69,268,2207,	0,692,926,1449,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr7	142471727	142473891	T334709_T334709	0	-	142471727	142473891	0	4	491,130,268,715,	0,692,926,1449,
#Partially deleted in new
chr7	142471727	142478272	T334712_T334712	0	-	142471727	142478272	0	3	491,120,5619,	0,692,926,
#Partially deleted in new
chr7	142471727	142478272	T334713_T334713	0	-	142471727	142478272	0	4	491,137,268,5096,	0,692,926,1449,
#Partially deleted in new
chr7	142471727	142478272	T334711_T334711	0	-	142471727	142478272	0	4	491,120,268,5096,	0,692,926,1449,
#Partially deleted in new
chr7	142475557	142478497	T334715_T334715	0	-	142475557	142478497	0	2	416,225,	0,2715,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr7	142510717	142569467	T334731_T334731	0	+	142510717	142569467	0	23	498,52,1833,135,117,78,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,334,51,	0,3042,40597,48092,49057,49796,50167,50671,51006,52512,52997,53518,53943,54645,55034,55278,55529,56009,56852,57249,57565,57831,58699,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr7	142510848	142571293	T334734_T334734	0	+	142510848	142571293	0	22	367,1833,135,117,78,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,334,1622,	0,40466,47961,48926,49665,50036,50540,50875,52381,52866,53387,53812,54514,54903,55147,55398,55878,56721,57118,57434,57700,58823,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr7	142510848	142571293	T334733_T334733	0	+	142510848	142571293	0	22	367,135,1833,135,78,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,334,1622,	0,2828,40466,47961,49665,50036,50540,50875,52381,52866,53387,53812,54514,54903,55147,55398,55878,56721,57118,57434,57700,58823,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr7	142510848	142571293	T334732_T334732	0	+	142510848	142571293	0	21	367,1833,135,78,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,334,1622,	0,40466,47961,49665,50036,50540,50875,52381,52866,53387,53812,54514,54903,55147,55398,55878,56721,57118,57434,57700,58823,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr7	142510848	142571293	T334735_T334735	0	+	142510848	142571293	0	23	367,135,1833,135,117,78,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,334,1622,	0,2828,40466,47961,48926,49665,50036,50540,50875,52381,52866,53387,53812,54514,54903,55147,55398,55878,56721,57118,57434,57700,58823,
#Boundary problem: need 23, got 22, diff 1, mapped 1.0
chr7	142511078	142569467	T334737_T334737	0	+	142511078	142569467	0	23	137,135,1833,135,117,78,197,65,781,156,357,125,163,115,53,120,248,174,150,194,156,334,51,	0,2598,40236,47731,48696,49435,49810,50310,50645,52151,52636,53157,53582,54284,54673,54917,55168,55648,56491,56888,57204,57470,58338,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr7	142511078	142571293	T334740_T334740	0	+	142511078	142571293	0	22	137,135,1833,135,78,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,309,1622,	0,2598,40236,47731,49435,49806,50310,50645,52151,52636,53157,53582,54284,54673,54917,55168,55648,56491,56888,57204,57470,58593,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr7	142511078	142569467	T334739_T334739	0	+	142511078	142569467	0	22	137,135,1833,135,78,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,334,51,	0,2598,40236,47731,49435,49806,50310,50645,52151,52636,53157,53582,54284,54673,54917,55168,55648,56491,56888,57204,57470,58338,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr7	142511078	142569467	T334738_T334738	0	+	142511078	142569467	0	22	137,135,1833,135,242,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,334,51,	0,2598,40236,47731,49435,49806,50310,50645,52151,52636,53157,53582,54284,54673,54917,55168,55648,56491,56888,57204,57470,58338,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr7	142552430	142571293	T334743_T334743	0	+	142552430	142571293	0	21	717,135,78,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,334,55,1622,	0,6379,8083,8454,8958,9293,10799,11284,11805,12230,12932,13321,13565,13816,14296,15139,15536,15852,16118,17089,17241,
#Boundary problem: need 22, got 21, diff 1, mapped 1.0
chr7	142552430	142571293	T334742_T334742	0	+	142552430	142571293	0	22	717,135,117,78,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,334,55,1622,	0,6379,7344,8083,8454,8958,9293,10799,11284,11805,12230,12932,13321,13565,13816,14296,15139,15536,15852,16118,17089,17241,
#Boundary problem: need 21, got 20, diff 1, mapped 1.0
chr7	142552838	142571293	T334745_T334745	0	+	142552838	142571293	0	21	309,135,117,78,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,299,1622,	0,5971,6936,7675,8046,8550,8885,10391,10876,11397,11822,12524,12913,13157,13408,13888,14731,15128,15444,15710,16833,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr7	142552838	142571293	T334744_T334744	0	+	142552838	142571293	0	20	309,135,78,201,65,781,156,357,125,163,115,53,120,248,174,150,194,156,299,1622,	0,5971,7675,8046,8550,8885,10391,10876,11397,11822,12524,12913,13157,13408,13888,14731,15128,15444,15710,16833,
#Boundary problem: need 20, got 19, diff 1, mapped 0.9
chr7	142552838	142571293	T334746_T334746	0	+	142552838	142571293	0	20	309,135,117,78,201,781,156,357,125,163,115,53,120,248,174,150,194,156,299,1622,	0,5971,6936,7675,8046,8885,10391,10876,11397,11822,12524,12913,13157,13408,13888,14731,15128,15444,15710,16833,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	142624654	142630247	T334772_T334772	0	+	142624654	142630247	0	2	921,2784,	0,2809,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	150071989	150085534	T335719_T335719	0	-	150071989	150085534	0	3	2099,1430,8527,	0,3492,5018,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	150076357	150087549	T335722_T335722	0	-	150076357	150087549	0	3	554,6992,2422,	0,650,8770,
#Partially deleted in new
chr7	155101634	155128344	T336633_T336633	0	-	155101634	155128344	0	4	45,2975,205,2919,	0,107,12748,23791,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr7	155101634	155143577	T336637_T336637	0	-	155101634	155143577	0	4	45,2975,92,1422,	0,107,40061,40521,
#Partially deleted in new
chr7	155101634	155128344	T336632_T336632	0	-	155101634	155128344	0	4	45,2975,159,2675,	0,107,23769,24035,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr7	155101634	155133449	T336635_T336635	0	-	155101634	155133449	0	4	45,2975,159,376,	0,107,23769,31439,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr7	155104100	155133449	T336639_T336639	0	-	155104100	155133449	0	3	616,137,376,	0,21325,28973,
#Partially deleted in new
chr7	155104100	155143577	T336640_T336640	0	-	155104100	155143577	0	3	616,205,1765,	0,10282,37712,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	155141485	155143287	T336642_T336642	0	-	155141485	155143287	0	2	302,875,	0,927,
#Partially deleted in new
chr7	155141485	155143577	T336643_T336643	0	-	155141485	155143577	0	2	302,1422,	0,670,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr7	155141485	155143057	T336641_T336641	0	-	155141485	155143057	0	2	302,514,	0,1058,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	2069802	2075774	T337737_T337737	0	-	2069802	2075774	0	2	4004,48,	0,5924,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr8	2094721	2165296	T337748_T337748	0	+	2094721	2165296	0	7	1729,243,81,1178,7921,147,12051,	0,38426,45744,47291,48547,57125,58524,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr8	2094721	2165296	T337749_T337749	0	+	2094721	2165296	0	6	1729,243,231,7921,147,12051,	0,38426,48238,48547,57125,58524,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr8	2094721	2165296	T337747_T337747	0	+	2094721	2165296	0	5	1729,81,231,7632,13450,	0,45744,48238,48547,57125,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	2103578	2165296	T337753_T337753	0	+	2103578	2165296	0	3	1135,2725,22028,	0,36887,39690,
#Boundary problem: need 7, got 5, diff 2, mapped 0.7
chr8	2103578	2165296	T337755_T337755	0	+	2103578	2165296	0	7	1135,170,243,81,218,231,22028,	0,28642,29569,36887,38434,39381,39690,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr8	2103578	2165296	T337754_T337754	0	+	2103578	2165296	0	4	1135,81,231,22028,	0,36887,39381,39690,
#Boundary problem: need 7, got 4, diff 3, mapped 0.6
chr8	2103876	2165296	T337758_T337758	0	+	2103876	2165296	0	7	837,170,243,81,1178,7921,13450,	0,28344,29271,36589,38136,39392,47970,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr8	2103876	2165296	T337757_T337757	0	+	2103876	2165296	0	4	837,81,1178,22028,	0,36589,38136,39392,
#Boundary problem: need 10, got 6, diff 4, mapped 0.6
chr8	2103876	2165296	T337759_T337759	0	+	2103876	2165296	0	10	837,170,243,81,1178,7252,189,4253,149,6342,	0,28344,29271,36589,38136,39392,46835,47970,53953,55078,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr8	2104574	2165296	T337760_T337760	0	+	2104574	2165296	0	5	139,81,231,7632,13450,	0,35891,38385,38694,47272,
#Boundary problem: need 7, got 4, diff 3, mapped 0.6
chr8	2104600	2165296	T337761_T337761	0	+	2104600	2165296	0	7	113,170,243,81,231,7632,13450,	0,27620,28547,35865,38359,38668,47246,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr8	2104620	2165296	T337763_T337763	0	+	2104620	2165296	0	7	93,81,218,231,7921,147,12051,	0,35845,37392,38339,38648,47226,48625,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr8	2104620	2165296	T337764_T337764	0	+	2104620	2165296	0	6	93,81,1178,7921,147,12051,	0,35845,37392,38648,47226,48625,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr8	2132220	2165296	T337768_T337768	0	+	2132220	2165296	0	4	170,243,2725,22028,	0,927,8245,11048,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr8	2132220	2165296	T337767_T337767	0	+	2132220	2165296	0	4	170,243,81,15986,	0,927,8245,17090,
#Boundary problem: need 7, got 5, diff 2, mapped 0.7
chr8	2132856	2165296	T337771_T337771	0	+	2132856	2165296	0	7	534,81,231,7921,147,188,10495,	0,7609,10103,10412,18990,20389,21945,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr8	2132856	2165296	T337769_T337769	0	+	2132856	2165296	0	4	534,81,10474,10495,	0,7609,10103,21945,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr8	2132856	2165296	T337770_T337770	0	+	2132856	2165296	0	5	534,81,231,7632,13450,	0,7609,10103,10412,18990,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr8	2141620	2165296	T337773_T337773	0	+	2141620	2165296	0	4	1570,7921,147,12051,	0,1648,10226,11625,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	2142594	2152846	T337774_T337774	0	-	2142594	2152846	0	2	4489,5384,	0,4868,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chr8	2142594	2153887	T337775_T337775	0	-	2142594	2153887	0	4	600,1871,3149,5444,	0,677,2614,5849,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	2359769	2380597	T337795_T337795	0	+	2359769	2380597	0	3	5387,1676,3828,	0,14357,17000,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	2359769	2380597	T337797_T337797	0	+	2359769	2380597	0	2	5387,6471,	0,14357,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	2388201	2390778	T337805_T337805	0	-	2388201	2390778	0	2	142,660,	0,1917,
#Partially deleted in new
chr8	2480409	2525698	T337813_T337813	0	+	2480409	2525698	0	2	583,7010,	0,38279,
#Partially deleted in new
chr8	2480409	2525698	T337814_T337814	0	+	2480409	2525698	0	3	583,204,3836,	0,38279,41453,
#Partially deleted in new
chr8	2480409	2534793	T337815_T337815	0	+	2480409	2534793	0	3	583,204,27,	0,38279,54357,
#Partially deleted in new
chr8	2480447	2534793	T337816_T337816	0	+	2480447	2534793	0	4	545,153,204,27,	0,36817,38241,54319,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr8	29411874	29449415	T341222_T341222	0	-	29411874	29449415	0	6	1311,294,148,13183,160,939,	0,3923,8719,20989,35631,36602,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr8	29411874	29449415	T341221_T341221	0	-	29411874	29449415	0	5	1311,294,13183,160,939,	0,3923,20989,35631,36602,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr8	29411874	29449415	T341219_T341219	0	-	29411874	29449415	0	5	6318,148,13183,160,939,	0,8719,20989,35631,36602,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr8	29411874	29449415	T341220_T341220	0	-	29411874	29449415	0	5	4217,148,13183,160,939,	0,8719,20989,35631,36602,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	41513171	41522414	T342907_T342907	0	+	41513171	41522414	0	3	1674,1973,810,	0,4083,8433,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	41513179	41522414	T342908_T342908	0	+	41513179	41522414	0	3	2977,2517,810,	0,3531,8425,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	41513179	41523091	T342909_T342909	0	+	41513179	41523091	0	3	2977,2517,376,	0,3531,9536,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	41513181	41522414	T342910_T342910	0	+	41513181	41522414	0	3	1664,2837,810,	0,3209,8423,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	49596592	49608759	T343530_T343530	0	-	49596592	49608759	0	2	1743,1461,	0,10706,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	49604637	49609195	T343534_T343534	0	-	49604637	49609195	0	2	2127,1897,	0,2661,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	116441789	116471317	T349866_T349866	0	+	116441789	116471317	0	2	125,2902,	0,26626,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr8	117220373	117257903	T349932_T349932	0	+	117220373	117257903	0	4	2928,162,166,2045,	0,10591,32218,35485,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	117246179	117247940	T349937_T349937	0	+	117246179	117247940	0	2	337,1165,	0,596,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	117254314	117257903	T349938_T349938	0	+	117254314	117257903	0	2	299,2045,	0,1544,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	117254314	117257903	T349939_T349939	0	+	117254314	117257903	0	2	326,2045,	0,1544,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	117301547	117315803	T349948_T349948	0	+	117301547	117315803	0	2	381,11582,	0,2674,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	125740858	125746146	T350824_T350824	0	+	125740858	125746146	0	3	1309,63,1540,	0,2440,3748,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	125740858	125746146	T350825_T350825	0	+	125740858	125746146	0	3	1449,63,1540,	0,2440,3748,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	125740869	125746146	T350826_T350826	0	+	125740869	125746146	0	2	1298,2848,	0,2429,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	125740903	125746146	T350834_T350834	0	+	125740903	125746146	0	2	1404,2848,	0,2395,
#Partially deleted in new
chr8	142753179	142825270	T352814_T352814	0	+	142753179	142825270	0	2	349,562,	0,71529,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	144275510	144280253	T353278_T353278	0	+	144275510	144280253	0	2	41,3940,	0,803,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr8	144283272	144305112	T353294_T353294	0	-	144283272	144305112	0	9	3329,2426,671,125,133,85,111,114,3776,	0,4355,11811,12706,14184,14477,15940,16330,18064,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr8	144283272	144301828	T353292_T353292	0	-	144283272	144301828	0	9	3329,2426,671,125,133,139,111,200,1223,	0,4355,11811,12706,14184,14477,15940,16330,17333,
#Boundary problem: need 11, got 10, diff 1, mapped 0.9
chr8	144283272	144305112	T353295_T353295	0	-	144283272	144305112	0	11	4013,2439,131,78,125,133,85,104,114,104,2697,	0,4355,11811,12404,12706,14184,14477,15947,16330,18133,19143,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	144283272	144292471	T353282_T353282	0	-	144283272	144292471	0	2	4013,4844,	0,4355,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	144300511	144306363	T353315_T353315	0	+	144300511	144306363	0	3	2744,711,735,	0,3730,5117,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	144300511	144305112	T353314_T353314	0	+	144300511	144305112	0	3	1002,813,871,	0,1931,3730,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	144300511	144305112	T353313_T353313	0	+	144300511	144305112	0	3	1002,252,871,	0,2492,3730,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	144300511	144306363	T353316_T353316	0	+	144300511	144306363	0	3	2744,710,735,	0,3730,5117,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	144925654	144939570	T353800_T353800	0	+	144925654	144939570	0	2	7714,5143,	0,8773,
#Partially deleted in new
chr8	144925845	144952623	T353803_T353803	0	-	144925845	144952623	0	3	2191,12943,18,	0,8678,26760,
#Partially deleted in new
chr8	144932577	144939570	T353805_T353805	0	+	144932577	144939570	0	2	4167,1420,	0,5573,
#Partially deleted in new
chr8	144937536	145061587	T353806_T353806	0	-	144937536	145061587	0	45	3093,4479,3381,99,105,84,357,139,179,158,184,127,155,153,126,96,105,162,78,319,155,94,128,96,120,107,116,167,93,78,90,62,199,1128,175,134,645,97,222,785,237,255,179,81,416,	0,54548,59135,63415,63608,63883,64041,64485,65734,66045,66277,66567,66775,67015,68165,68568,68761,69031,69266,69424,69828,70629,70949,71266,71441,71642,71829,72479,73610,73796,74782,75262,111808,113334,114538,119563,119798,120639,120841,121175,122043,122352,122686,122989,123635,
#Partially deleted in new
chr8	144937536	145065435	T353807_T353807	0	-	144937536	145065435	0	44	3093,4479,99,105,84,357,139,179,158,184,127,155,153,126,96,105,162,78,319,155,94,128,96,120,95,116,167,93,78,90,62,199,1128,175,134,645,97,222,785,237,255,179,81,235,	0,54548,63415,63608,63883,64041,64485,65734,66045,66277,66567,66775,67015,68165,68568,68761,69031,69266,69424,69828,70629,70949,71266,71441,71654,71829,72479,73610,73796,74782,75262,111808,113334,114538,119563,119798,120639,120841,121175,122043,122352,122686,122989,127664,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr8	145558488	145564797	T354056_T354056	0	+	145558488	145564797	0	2	753,603,	0,5706,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr8	145588018	145595392	T354129_T354129	0	-	145588018	145595392	0	3	39,5376,290,	0,597,7084,
#Partially deleted in new
chr9	39735875	39745348	T358495_T358495	0	+	39735875	39745348	0	3	206,151,965,	0,7643,8508,
#Partially deleted in new
chr9	39735875	39745348	T358494_T358494	0	+	39735875	39745348	0	3	206,1380,965,	0,6414,8508,
#Partially deleted in new
chr9	39743518	39745348	T358496_T358496	0	+	39743518	39745348	0	2	151,891,	0,939,
#Partially deleted in new
chr9	39900172	39908437	T358504_T358504	0	+	39900172	39908437	0	2	719,2295,	0,5970,
#Partially deleted in new
chr9	39904997	39908437	T358505_T358505	0	+	39904997	39908437	0	1	3440,	0,
#Partially deleted in new
chr9	40103854	40153061	T358509_T358509	0	-	40103854	40153061	0	4	643,154,184,106,	0,33861,48435,49101,
#Partially deleted in new
chr9	40103854	40153061	T358510_T358510	0	-	40103854	40153061	0	3	643,184,106,	0,48435,49101,
#Partially deleted in new
chr9	41013113	41018199	T358544_T358544	0	-	41013113	41018199	0	2	524,330,	0,4756,
#Partially deleted in new
chr9	41276085	41278980	T358548_T358548	0	+	41276085	41278980	0	1	2895,	0,
#Partially deleted in new
chr9	41277590	41287292	T358549_T358549	0	+	41277590	41287292	0	2	410,1049,	0,8653,
#Partially deleted in new
chr9	41305352	41306339	T358550_T358550	0	-	41305352	41306339	0	1	987,	0,
#Partially deleted in new
chr9	41313577	41322498	T358551_T358551	0	+	41313577	41322498	0	3	994,84,37,	0,8241,8884,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	43000298	43007621	T358669_T358669	0	-	43000298	43007621	0	4	1754,130,123,668,	0,3875,6443,6655,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chr9	43000298	43007621	T358670_T358670	0	-	43000298	43007621	0	5	1754,117,130,123,668,	0,3225,3875,6443,6655,
#Partially deleted in new
chr9	43138626	43160283	T358686_T358686	0	-	43138626	43160283	0	3	2181,152,420,	0,4002,21237,
#Partially deleted in new
chr9	43138626	43160351	T358688_T358688	0	-	43138626	43160351	0	9	392,121,152,75,146,424,61,224,488,	0,2060,4002,4764,6246,6517,9218,13158,21237,
#Partially deleted in new
chr9	43138626	43160283	T358687_T358687	0	-	43138626	43160283	0	7	2181,152,75,146,424,224,420,	0,4002,4764,6246,6517,13158,21237,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	43138626	43146658	T358683_T358683	0	-	43138626	43146658	0	3	2181,2390,1515,	0,4002,6517,
#Partially deleted in new
chr9	43138626	43160566	T358691_T358691	0	-	43138626	43160566	0	8	2181,152,75,146,424,224,164,248,	0,4002,4764,6246,6517,13158,21237,21692,
#Partially deleted in new
chr9	43138626	43160171	T358684_T358684	0	-	43138626	43160171	0	9	392,121,152,75,146,424,61,153,308,	0,2060,4002,4764,6246,6517,9218,13229,21237,
#Partially deleted in new
chr9	43138626	43160566	T358690_T358690	0	-	43138626	43160566	0	8	392,121,152,146,424,153,164,248,	0,2060,4002,6246,6517,13229,21237,21692,
#Partially deleted in new
chr9	43138626	43160283	T358685_T358685	0	-	43138626	43160283	0	8	392,121,152,75,146,424,224,420,	0,2060,4002,4764,6246,6517,13158,21237,
#Partially deleted in new
chr9	43138626	43160396	T358689_T358689	0	-	43138626	43160396	0	9	2181,152,75,146,424,61,224,164,78,	0,4002,4764,6246,6517,9218,13158,21237,21692,
#Partially deleted in new
chr9	43141920	43160129	T358694_T358694	0	-	43141920	43160129	0	5	1545,146,424,224,221,	0,2952,3223,9864,17988,
#Partially deleted in new
chr9	43141920	43160283	T358695_T358695	0	-	43141920	43160283	0	4	1545,424,224,420,	0,3223,9864,17943,
#Partially deleted in new
chr9	43150088	43160396	T358696_T358696	0	-	43150088	43160396	0	4	28,224,164,78,	0,1696,9775,10230,
#Partially deleted in new
chr9	43330966	43583126	T358703_T358703	0	-	43330966	43583126	0	3	578,72,574,	0,136994,251586,
#Partially deleted in new
chr9	43354387	43583126	T358704_T358704	0	-	43354387	43583126	0	3	180,72,574,	0,113573,228165,
#Partially deleted in new
chr9	43354625	43582949	T358705_T358705	0	-	43354625	43582949	0	3	541,72,397,	0,113335,227927,
#Partially deleted in new
chr9	43462969	43583126	T358710_T358710	0	-	43462969	43583126	0	3	1239,72,574,	0,4991,119583,
#Partially deleted in new
chr9	43462969	43490455	T358709_T358709	0	-	43462969	43490455	0	3	1239,72,107,	0,4991,27379,
#Partially deleted in new
chr9	43462969	43490449	T358708_T358708	0	-	43462969	43490449	0	3	478,72,101,	0,4991,27379,
#Partially deleted in new
chr9	43472350	43490449	T358711_T358711	0	-	43472350	43490449	0	2	350,101,	0,17998,
#Partially deleted in new
chr9	43517894	43540780	T358712_T358712	0	-	43517894	43540780	0	2	823,56,	0,22830,
#Partially deleted in new
chr9	43580987	43589578	T358713_T358713	0	+	43580987	43589578	0	2	304,78,	0,8513,
#Partially deleted in new
chr9	43589698	43610101	T358714_T358714	0	+	43589698	43610101	0	3	306,132,268,	0,11060,20135,
#Partially deleted in new
chr9	43589698	43610101	T358715_T358715	0	+	43589698	43610101	0	3	306,107,268,	0,11085,20135,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr9	44169947	44245808	T358785_T358785	0	-	44169947	44245808	0	8	574,85,60,42,1397,114,236,60,	0,2230,2974,3123,4383,12744,44206,75801,
#Partially deleted in new
chr9	44181658	44245805	T358788_T358788	0	-	44181658	44245805	0	4	74,114,236,57,	0,1033,32495,64090,
#Partially deleted in new
chr9	44181658	44245788	T358787_T358787	0	-	44181658	44245788	0	4	74,207,236,40,	0,940,32495,64090,
#Partially deleted in new
chr9	44181658	44245788	T358786_T358786	0	-	44181658	44245788	0	4	74,227,236,40,	0,920,32495,64090,
#Partially deleted in new
chr9	44182162	44245805	T358790_T358790	0	-	44182162	44245805	0	3	643,250,57,	0,31991,63586,
#Partially deleted in new
chr9	44182162	44245805	T358791_T358791	0	-	44182162	44245805	0	3	643,236,57,	0,31991,63586,
#Partially deleted in new
chr9	44182162	44214623	T358789_T358789	0	-	44182162	44214623	0	2	643,470,	0,31991,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	44212505	44245813	T358792_T358792	0	-	44212505	44245813	0	2	1884,65,	0,33243,
#Partially deleted in new
chr9	44213632	44291080	T358793_T358793	0	+	44213632	44291080	0	3	757,315,100,	0,32116,77348,
#Partially deleted in new
chr9	44239525	44245813	T358794_T358794	0	-	44239525	44245813	0	2	381,65,	0,6223,
#Partially deleted in new
chr9	44239530	44291080	T358795_T358795	0	+	44239530	44291080	0	3	376,315,100,	0,6218,51450,
#Partially deleted in new
chr9	44253901	44273892	T358797_T358797	0	-	44253901	44273892	0	4	2916,88,96,218,	0,6150,6520,19773,
#Partially deleted in new
chr9	44253901	44264331	T358796_T358796	0	-	44253901	44264331	0	3	2916,88,3910,	0,6150,6520,
#Partially deleted in new
chr9	44253901	44324201	T358798_T358798	0	-	44253901	44324201	0	4	2916,88,96,19,	0,6150,6520,70281,
#Partially deleted in new
chr9	44269721	44326117	T358800_T358800	0	-	44269721	44326117	0	4	3843,217,161,198,	0,3953,54461,56198,
#Partially deleted in new
chr9	44269721	44314508	T358799_T358799	0	-	44269721	44314508	0	3	3843,217,98,	0,3953,44689,
#Partially deleted in new
chr9	44326253	44335178	T358801_T358801	0	+	44326253	44335178	0	2	260,581,	0,8344,
#Partially deleted in new
chr9	44326312	44397368	T358803_T358803	0	+	44326312	44397368	0	4	201,2140,86,6292,	0,59031,61455,64764,
#Partially deleted in new
chr9	44326312	44397368	T358802_T358802	0	+	44326312	44397368	0	4	201,96,86,6292,	0,61075,61455,64764,
#Partially deleted in new
chr9	44333932	44335178	T358804_T358804	0	+	44333932	44335178	0	1	1246,	0,
#Partially deleted in new
chr9	44384834	44397368	T358808_T358808	0	+	44384834	44397368	0	3	2649,86,6292,	0,2933,6242,
#Partially deleted in new
chr9	44390619	44397368	T358809_T358809	0	+	44390619	44397368	0	1	6749,	0,
#Partially deleted in new
chr9	44401765	44464693	T358816_T358816	0	+	44401765	44464693	0	3	325,235,1199,	0,31439,61729,
#Partially deleted in new
chr9	44432700	44464693	T358818_T358818	0	+	44432700	44464693	0	2	739,1199,	0,30794,
#Partially deleted in new
chr9	44432785	44464693	T358819_T358819	0	+	44432785	44464693	0	3	92,235,1199,	0,419,30709,
#Partially deleted in new
chr9	44432877	44464693	T358820_T358820	0	+	44432877	44464693	0	3	7,235,1199,	0,327,30617,
#Partially deleted in new
chr9	45352674	45442103	T358925_T358925	0	+	45352674	45442103	0	4	3904,448,851,1183,	0,4094,87221,88246,
#Partially deleted in new
chr9	45352674	45442103	T358924_T358924	0	+	45352674	45442103	0	3	3904,552,2368,	0,4094,87061,
#Partially deleted in new
chr9	45357252	45442103	T358929_T358929	0	+	45357252	45442103	0	3	73,1423,736,	0,82483,84115,
#Partially deleted in new
chr9	45357404	45442103	T358930_T358930	0	+	45357404	45442103	0	2	126,2368,	0,82331,
#Partially deleted in new
chr9	45428024	45442103	T358943_T358943	0	+	45428024	45442103	0	3	1444,6405,736,	0,6729,13343,
#Partially deleted in new
chr9	45428024	45442103	T358945_T358945	0	+	45428024	45442103	0	3	1444,5352,1162,	0,6729,12917,
#Partially deleted in new
chr9	45428024	45442103	T358944_T358944	0	+	45428024	45442103	0	2	1444,7350,	0,6729,
#Partially deleted in new
chr9	45432418	45442103	T358947_T358947	0	+	45432418	45442103	0	2	57,7930,	0,1755,
#Partially deleted in new
chr9	45433633	45442103	T358949_T358949	0	+	45433633	45442103	0	3	2739,2758,1103,	0,4202,7367,
#Partially deleted in new
chr9	45433633	45442103	T358948_T358948	0	+	45433633	45442103	0	2	6960,1103,	0,7367,
#Partially deleted in new
chr9	45433784	45442103	T358950_T358950	0	+	45433784	45442103	0	2	6026,2145,	0,6174,
#Partially deleted in new
chr9	45433784	45442103	T358952_T358952	0	+	45433784	45442103	0	3	6045,1180,736,	0,6194,7583,
#Partially deleted in new
chr9	45433784	45442103	T358951_T358951	0	+	45433784	45442103	0	4	3922,1819,731,1103,	0,4132,6078,7216,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	45435341	45442103	T358953_T358953	0	+	45435341	45442103	0	2	29,3854,	0,2908,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	45435341	45442103	T358954_T358954	0	+	45435341	45442103	0	3	29,1343,1103,	0,2908,5659,
#Partially deleted in new
chr9	45436753	45615168	T358956_T358956	0	+	45436753	45615168	0	2	4405,525,	0,177890,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	45438262	45442103	T358958_T358958	0	+	45438262	45442103	0	2	1548,2000,	0,1841,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	45484550	45496066	T358965_T358965	0	+	45484550	45496066	0	4	128,1089,83,3650,	0,3322,7422,7866,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	45484550	45496066	T358966_T358966	0	+	45484550	45496066	0	3	128,1089,3650,	0,3322,7866,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	45484550	45496066	T358967_T358967	0	+	45484550	45496066	0	3	128,4183,3650,	0,3322,7866,
#Partially deleted in new
chr9	45722334	45722619	T358972_T358972	0	-	45722334	45722619	0	1	285,	0,
#Partially deleted in new
chr9	45727057	45740245	T358973_T358973	0	+	45727057	45740245	0	5	264,506,186,2342,2130,	0,816,6003,6513,11058,
#Partially deleted in new
chr9	45727106	45728571	T358974_T358974	0	+	45727106	45728571	0	3	215,403,97,	0,828,1368,
#Partially deleted in new
chr9	45727106	45728571	T358976_T358976	0	+	45727106	45728571	0	3	215,464,97,	0,767,1368,
#Partially deleted in new
chr9	45727106	45728571	T358975_T358975	0	+	45727106	45728571	0	3	215,506,97,	0,767,1368,
#Partially deleted in new
chr9	45728883	45740245	T358978_T358978	0	+	45728883	45740245	0	4	901,2947,2504,2130,	0,1416,4525,9232,
#Partially deleted in new
chr9	45728883	45729994	T358977_T358977	0	+	45728883	45729994	0	1	1111,	0,
#Partially deleted in new
chr9	45728947	45734928	T358979_T358979	0	+	45728947	45734928	0	2	498,531,	0,5450,
#Partially deleted in new
chr9	45728973	45734105	T358982_T358982	0	-	45728973	45734105	0	6	1438,1649,259,406,115,26,	0,1598,3462,3867,4478,5106,
#Partially deleted in new
chr9	45728973	45733971	T358981_T358981	0	-	45728973	45733971	0	2	1438,21,	0,4977,
#Partially deleted in new
chr9	45728973	45734327	T358984_T358984	0	-	45728973	45734327	0	4	1438,1778,1025,248,	0,1598,3568,5106,
#Partially deleted in new
chr9	45728973	45734122	T358983_T358983	0	-	45728973	45734122	0	2	1438,43,	0,5106,
#Partially deleted in new
chr9	45728973	45733543	T358980_T358980	0	-	45728973	45733543	0	4	1438,1649,259,703,	0,1598,3462,3867,
#Partially deleted in new
chr9	45728973	45734327	T358985_T358985	0	-	45728973	45734327	0	3	1438,1922,248,	0,2671,5106,
#Partially deleted in new
chr9	45728977	45732417	T358986_T358986	0	+	45728977	45732417	0	2	79,949,	0,2491,
#Partially deleted in new
chr9	45732746	45736681	T358988_T358988	0	+	45732746	45736681	0	3	500,1426,1393,	0,813,2542,
#Partially deleted in new
chr9	45732746	45736681	T358987_T358987	0	+	45732746	45736681	0	3	500,1415,1393,	0,824,2542,
#Partially deleted in new
chr9	45732746	45740245	T358989_T358989	0	+	45732746	45740245	0	3	500,2342,2130,	0,824,5369,
#Partially deleted in new
chr9	45732841	45740245	T358990_T358990	0	+	45732841	45740245	0	3	405,2548,2130,	0,523,5274,
#Partially deleted in new
chr9	45733558	45736681	T358991_T358991	0	+	45733558	45736681	0	2	929,1393,	0,1730,
#Partially deleted in new
chr9	45738129	45740495	T358997_T358997	0	+	45738129	45740495	0	3	34,1521,106,	0,330,2260,
#Partially deleted in new
chr9	45754389	45755347	T358998_T358998	0	-	45754389	45755347	0	1	958,	0,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	45767747	45769693	T358999_T358999	0	+	45767747	45769693	0	2	824,1044,	0,902,
#Partially deleted in new
chr9	46177553	46293613	T359012_T359012	0	+	46177553	46293613	0	3	133,829,209,	0,32635,115851,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	46206063	46291977	T359015_T359015	0	-	46206063	46291977	0	2	5759,45,	0,85869,
#Partially deleted in new
chr9	46208311	46293613	T359017_T359017	0	+	46208311	46293613	0	2	2706,209,	0,85093,
#Partially deleted in new
chr9	46208560	46296831	T359018_T359018	0	+	46208560	46296831	0	2	728,1827,	0,86444,
#Partially deleted in new
chr9	46270652	46329842	T359023_T359023	0	-	46270652	46329842	0	4	511,122,481,447,	0,601,3845,58743,
#Partially deleted in new
chr9	46270652	46329829	T359021_T359021	0	-	46270652	46329829	0	4	723,177,481,434,	0,2836,3845,58743,
#Partially deleted in new
chr9	46270652	46329829	T359022_T359022	0	-	46270652	46329829	0	4	511,122,587,434,	0,601,3739,58743,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	46270652	46275291	T359019_T359019	0	-	46270652	46275291	0	3	511,122,794,	0,601,3845,
#Partially deleted in new
chr9	46270652	46329538	T359020_T359020	0	-	46270652	46329538	0	5	511,122,481,75,143,	0,601,3845,50364,58743,
#Partially deleted in new
chr9	46270652	46329842	T359024_T359024	0	-	46270652	46329842	0	3	511,122,447,	0,601,58743,
#Partially deleted in new
chr9	46273307	46275291	T359025_T359025	0	-	46273307	46275291	0	2	358,794,	0,1190,
#Partially deleted in new
chr9	46342807	46390825	T359028_T359028	0	-	46342807	46390825	0	2	488,22,	0,47996,
#Partially deleted in new
chr9	46342807	46387106	T359027_T359027	0	-	46342807	46387106	0	2	488,1007,	0,43292,
#Partially deleted in new
chr9	46359811	46363316	T359030_T359030	0	+	46359811	46363316	0	1	3505,	0,
#Partially deleted in new
chr9	46385603	46387106	T359036_T359036	0	-	46385603	46387106	0	1	1503,	0,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	47160138	47164662	T359069_T359069	0	+	47160138	47164662	0	3	172,2089,830,	0,520,3694,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr9	47160212	47162956	T359070_T359070	0	+	47160212	47162956	0	1	2744,	0,
#Partially deleted in new
chr9	47163278	47169446	T359072_T359072	0	+	47163278	47169446	0	2	649,3556,	0,2612,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	47163343	47165837	T359073_T359073	0	+	47163343	47165837	0	2	2288,23,	0,2471,
#Partially deleted in new
chr9	47163352	47169446	T359074_T359074	0	+	47163352	47169446	0	3	575,68,3556,	0,2211,2538,
#Partially deleted in new
chr9	47163667	47169446	T359075_T359075	0	+	47163667	47169446	0	4	260,68,2542,267,	0,1896,2223,5512,
#Partially deleted in new
chr9	47164757	47169446	T359077_T359077	0	+	47164757	47169446	0	3	874,445,267,	0,1133,4422,
#Partially deleted in new
chr9	65736492	65782849	T359108_T359108	0	-	65736492	65782849	0	4	122,151,184,259,	0,30859,45432,46098,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359150_T359150	0	+	66454654	66470398	0	5	3379,157,1458,2308,1782,	0,5153,7480,10937,13962,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359169_T359169	0	+	66454654	66470398	0	5	392,2841,157,1822,2636,	0,1432,5153,10937,13108,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359145_T359145	0	+	66454654	66470398	0	3	4369,157,4807,	0,5153,10937,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359165_T359165	0	+	66454654	66470398	0	3	5310,2308,1782,	0,10937,13962,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr9	66454654	66470398	T359148_T359148	0	+	66454654	66470398	0	6	392,2841,157,1822,137,1757,	0,1432,5153,10937,13108,13987,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359141_T359141	0	+	66454654	66470398	0	5	4369,157,1822,228,1782,	0,5153,10937,13017,13962,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66503198	T359195_T359195	0	+	66454654	66503198	0	4	3379,157,378,2756,	0,5153,44974,45788,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470824	T359192_T359192	0	+	66454654	66470824	0	4	4369,157,22,426,	0,5153,7480,15744,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359166_T359166	0	+	66454654	66470398	0	4	392,1269,157,4807,	0,1432,5153,10937,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359151_T359151	0	+	66454654	66470398	0	4	3379,157,2308,1782,	0,5153,10937,13962,
#Boundary problem: need 1, got 0, diff 1, mapped 0.0
chr9	66454654	66456179	T359133_T359133	0	-	66454654	66456179	0	1	1525,	0,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359163_T359163	0	+	66454654	66470398	0	4	3379,157,1822,2636,	0,5153,10937,13108,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66503198	T359196_T359196	0	+	66454654	66503198	0	4	4273,157,378,2756,	0,5153,44974,45788,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	66454654	66465530	T359139_T359139	0	-	66454654	66465530	0	2	432,9134,	0,1742,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359153_T359153	0	+	66454654	66470398	0	4	4369,157,3473,4807,	0,5153,5465,10937,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359154_T359154	0	+	66454654	66470398	0	3	5310,3473,4807,	0,5465,10937,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	66454654	66465530	T359140_T359140	0	-	66454654	66465530	0	2	432,8625,	0,2251,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359161_T359161	0	+	66454654	66470398	0	3	3379,157,4807,	0,5153,10937,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359168_T359168	0	+	66454654	66470398	0	4	392,2841,157,4807,	0,1432,5153,10937,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359185_T359185	0	+	66454654	66470398	0	3	4273,157,8264,	0,5153,7480,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359184_T359184	0	+	66454654	66470398	0	4	4273,157,2308,1782,	0,5153,10937,13962,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66459068	T359135_T359135	0	-	66454654	66459068	0	3	432,943,877,	0,2251,3537,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359175_T359175	0	+	66454654	66470398	0	4	392,3878,2308,1757,	0,1432,10937,13987,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66459068	T359134_T359134	0	-	66454654	66459068	0	3	432,916,877,	0,2278,3537,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359178_T359178	0	+	66454654	66470398	0	5	4369,157,1458,2308,1757,	0,5153,7480,10937,13987,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359181_T359181	0	+	66454654	66470398	0	4	2701,157,1822,2636,	0,5153,10937,13108,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359149_T359149	0	+	66454654	66470398	0	4	392,1947,157,8264,	0,1432,5153,7480,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66459789	T359137_T359137	0	-	66454654	66459789	0	3	432,1452,1598,	0,1742,3537,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359162_T359162	0	+	66454654	66470398	0	4	4369,157,7780,1757,	0,5153,5465,13987,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359144_T359144	0	+	66454654	66470398	0	3	2701,157,8264,	0,5153,7480,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359183_T359183	0	+	66454654	66470398	0	4	4273,157,1822,2636,	0,5153,10937,13108,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359152_T359152	0	+	66454654	66470398	0	4	4273,157,1822,1757,	0,5153,10937,13987,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359179_T359179	0	+	66454654	66470398	0	3	2701,157,4807,	0,5153,10937,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359146_T359146	0	+	66454654	66470398	0	4	392,2937,157,10279,	0,1432,5153,5465,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359142_T359142	0	+	66454654	66470398	0	4	4273,157,2308,1757,	0,5153,10937,13987,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470824	T359194_T359194	0	+	66454654	66470824	0	4	3379,157,22,426,	0,5153,7480,15744,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359174_T359174	0	+	66454654	66470398	0	3	4273,157,10279,	0,5153,5465,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	66454654	66459836	T359138_T359138	0	-	66454654	66459836	0	2	432,2904,	0,2278,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359156_T359156	0	+	66454654	66470398	0	5	3379,157,1822,341,1870,	0,5153,10937,13017,13874,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	66454654	66470398	T359182_T359182	0	+	66454654	66470398	0	2	5310,8264,	0,7480,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470824	T359191_T359191	0	+	66454654	66470824	0	4	2701,157,22,426,	0,5153,7480,15744,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359160_T359160	0	+	66454654	66470398	0	4	392,1269,157,8264,	0,1432,5153,7480,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359173_T359173	0	+	66454654	66470398	0	5	392,1947,157,2308,1782,	0,1432,5153,10937,13962,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359147_T359147	0	+	66454654	66470398	0	3	392,3878,8264,	0,1432,7480,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr9	66454654	66470398	T359170_T359170	0	+	66454654	66470398	0	6	392,2841,157,1822,137,1782,	0,1432,5153,10937,13108,13962,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	66454654	66470398	T359187_T359187	0	+	66454654	66470398	0	2	5310,4807,	0,10937,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359164_T359164	0	+	66454654	66470398	0	3	3379,8092,1757,	0,5153,13987,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359157_T359157	0	+	66454654	66470398	0	4	392,3878,2308,1782,	0,1432,10937,13962,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359171_T359171	0	+	66454654	66470398	0	4	2701,157,2308,1782,	0,5153,10937,13962,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359190_T359190	0	+	66454654	66470398	0	5	4273,157,1822,228,1782,	0,5153,10937,13017,13962,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359172_T359172	0	+	66454654	66470398	0	5	4273,157,1822,137,1782,	0,5153,10937,13108,13962,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	66454654	66459546	T359136_T359136	0	-	66454654	66459546	0	2	432,2530,	0,2362,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470824	T359193_T359193	0	+	66454654	66470824	0	4	4273,157,22,426,	0,5153,7480,15744,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359158_T359158	0	+	66454654	66470398	0	3	4273,157,4807,	0,5153,10937,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359180_T359180	0	+	66454654	66470398	0	5	392,2937,157,2308,1782,	0,1432,5153,10937,13962,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359143_T359143	0	+	66454654	66470398	0	5	3379,157,5404,2308,1782,	0,5153,5465,10937,13962,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359155_T359155	0	+	66454654	66470398	0	5	3379,157,1458,1822,1757,	0,5153,7480,10937,13987,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359189_T359189	0	+	66454654	66470398	0	4	392,1947,157,4807,	0,1432,5153,10937,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359167_T359167	0	+	66454654	66470398	0	5	4369,157,1822,137,1782,	0,5153,10937,13108,13962,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359186_T359186	0	+	66454654	66470398	0	4	2701,157,5404,4807,	0,5153,5465,10937,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454654	66470398	T359188_T359188	0	+	66454654	66470398	0	5	392,2937,157,5279,2636,	0,1432,5153,7480,13108,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359177_T359177	0	+	66454654	66470398	0	3	3379,157,8264,	0,5153,7480,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454654	66470398	T359159_T359159	0	+	66454654	66470398	0	3	4369,157,8264,	0,5153,7480,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	66454654	66470398	T359176_T359176	0	+	66454654	66470398	0	4	392,2937,157,4807,	0,1432,5153,10937,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454655	66470398	T359199_T359199	0	+	66454655	66470398	0	3	5309,1822,2636,	0,10936,13107,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	66454655	66503198	T359200_T359200	0	+	66454655	66503198	0	3	5309,378,2756,	0,44973,45787,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	66454655	66470398	T359198_T359198	0	+	66454655	66470398	0	2	5309,10279,	0,5464,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	66454655	66470398	T359197_T359197	0	+	66454655	66470398	0	5	391,1947,157,2308,1757,	0,1431,5152,10936,13986,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	66763145	67005351	T359266_T359266	0	+	66763145	67005351	0	2	4889,112,	0,242094,
#Partially deleted in new
chr9	67680248	67681592	T359396_T359396	0	-	67680248	67681592	0	2	41,704,	0,640,
#Partially deleted in new
chr9	67682384	67685732	T359398_T359398	0	-	67682384	67685732	0	2	1184,201,	0,3147,
#Partially deleted in new
chr9	67682384	67730102	T359399_T359399	0	-	67682384	67730102	0	2	1184,179,	0,47539,
#Partially deleted in new
chr9	67682384	67684567	T359397_T359397	0	-	67682384	67684567	0	2	1184,740,	0,1443,
#Partially deleted in new
chr9	67683831	67705762	T359400_T359400	0	-	67683831	67705762	0	2	64,4271,	0,17660,
#Partially deleted in new
chr9	67693501	67695612	T359402_T359402	0	-	67693501	67695612	0	1	2111,	0,
#Partially deleted in new
chr9	67693501	67721691	T359403_T359403	0	-	67693501	67721691	0	2	1263,270,	0,27920,
#Partially deleted in new
chr9	67700685	67736388	T359405_T359405	0	-	67700685	67736388	0	2	2333,877,	0,34826,
#Partially deleted in new
chr9	67700685	67707195	T359404_T359404	0	-	67700685	67707195	0	1	6510,	0,
#Partially deleted in new
chr9	67729523	67735785	T359406_T359406	0	-	67729523	67735785	0	2	475,279,	0,5983,
#Partially deleted in new
chr9	67732781	67735806	T359407_T359407	0	-	67732781	67735806	0	3	321,954,295,	0,1319,2730,
#Partially deleted in new
chr9	67915108	67921540	T359430_T359430	0	+	67915108	67921540	0	4	61,1629,152,252,	0,186,2425,6180,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr9	68397491	68725768	T359507_T359507	0	-	68397491	68725768	0	15	4406,16326,3712,124,26,1508,110,92,102,1640,58,126,69,2340,1332,	0,6170,23314,27101,27299,27405,31581,32678,35973,36808,40227,41066,55442,57667,326945,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr9	68397491	68725768	T359509_T359509	0	-	68397491	68725768	0	16	1082,137,7295,17218,124,30,1506,110,92,102,1640,58,126,69,2340,1332,	0,1799,2283,9733,27101,27299,27407,31581,32678,35973,36808,40227,41066,55442,57667,326945,
#Boundary problem: need 16, got 15, diff 1, mapped 0.9
chr9	68397491	68725768	T359508_T359508	0	-	68397491	68725768	0	16	1936,7295,878,2834,6708,1076,3942,4284,92,102,1640,58,126,69,2636,1332,	0,2283,9733,10770,14641,21420,23314,27407,32678,35973,36808,40227,41066,55442,57371,326945,
#Boundary problem: need 15, got 14, diff 1, mapped 0.9
chr9	68397491	68725768	T359506_T359506	0	-	68397491	68725768	0	15	1936,7295,157,11726,99,3814,92,102,1640,58,126,171,69,2636,1332,	0,2283,9733,10770,23314,27877,32678,35973,36808,40227,41066,42453,55442,57371,326945,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr9	68397491	68725768	T359505_T359505	0	-	68397491	68725768	0	13	1936,7295,11616,5606,45,4392,92,102,1640,126,69,2636,1332,	0,2283,9733,21420,27180,27299,32678,35973,36808,41066,55442,57371,326945,
#Partially deleted in new
chr9	68424898	68725768	T359536_T359536	0	-	68424898	68725768	0	10	4284,92,102,123,58,126,171,69,2340,1332,	0,5271,8566,10918,12820,13659,15046,28035,30260,299538,
#Partially deleted in new
chr9	68455440	68686313	T359544_T359544	0	+	68455440	68686313	0	6	624,1570,32,60,1420,1533,	0,38446,40078,40172,40391,229340,
#Partially deleted in new
chr9	68475494	68705962	T359547_T359547	0	+	68475494	68705962	0	2	719,340,	0,230128,
#Partially deleted in new
chr9	68479322	68704146	T359549_T359549	0	+	68479322	68704146	0	2	241,1800,	0,223024,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	68491836	68691058	T359550_T359550	0	+	68491836	68691058	0	2	18,1042,	0,198180,
#Partially deleted in new
chr9	69174136	69232137	T359691_T359691	0	-	69174136	69232137	0	12	387,69,111,692,224,152,162,130,66,69,52,2526,	0,1555,1823,3560,5257,18587,30771,31320,32597,32766,44373,55475,
#Partially deleted in new
chr9	69204810	69219546	T359697_T359697	0	-	69204810	69219546	0	5	259,130,66,69,1037,	0,646,1923,2092,13699,
#Partially deleted in new
chr9	69204810	69240059	T359698_T359698	0	-	69204810	69240059	0	10	259,130,66,69,52,57,123,45,87,47,	0,646,1923,2092,13699,24801,30019,30751,33419,35202,
#Partially deleted in new
chr9	69204810	69274961	T359700_T359700	0	-	69204810	69274961	0	17	259,130,66,69,52,57,45,87,47,88,38,92,97,87,129,59,2629,	0,646,1923,2092,13699,24801,30751,33419,35202,40265,41130,50793,51982,54411,64585,67225,67522,
#Partially deleted in new
chr9	69204810	69247549	T359699_T359699	0	-	69204810	69247549	0	13	259,130,66,69,52,57,786,45,87,47,88,38,28,	0,646,1923,2092,13699,24801,29356,30751,33419,35202,40265,41130,42711,
#Partially deleted in new
chr9	69232900	69256901	T359709_T359709	0	-	69232900	69256901	0	7	2052,45,47,38,60,92,109,	0,2661,7112,13040,14621,22703,23892,
#Partially deleted in new
chr9	69232900	69247581	T359703_T359703	0	-	69232900	69247581	0	6	2052,45,47,88,38,60,	0,2661,7112,12175,13040,14621,
#Partially deleted in new
chr9	69232900	69255695	T359708_T359708	0	-	69232900	69255695	0	8	2052,45,87,47,88,38,60,92,	0,2661,5329,7112,12175,13040,14621,22703,
#Partially deleted in new
chr9	69232900	69247581	T359704_T359704	0	-	69232900	69247581	0	6	2065,45,87,47,38,60,	0,2661,5329,7112,13040,14621,
#Partially deleted in new
chr9	69232900	69247844	T359707_T359707	0	-	69232900	69247844	0	6	2597,45,87,47,38,323,	0,2661,5329,7112,13040,14621,
#Partially deleted in new
chr9	69232900	69259308	T359711_T359711	0	-	69232900	69259308	0	9	2052,45,87,47,38,60,92,97,87,	0,2661,5329,7112,13040,14621,22703,23892,26321,
#Partially deleted in new
chr9	69232900	69256901	T359710_T359710	0	-	69232900	69256901	0	8	1350,45,47,88,38,60,92,109,	0,2661,7112,12175,13040,14621,22703,23892,
#Partially deleted in new
chr9	69232900	69247844	T359706_T359706	0	-	69232900	69247844	0	6	2706,87,47,88,38,323,	0,5329,7112,12175,13040,14621,
#Partially deleted in new
chr9	69232900	69247844	T359705_T359705	0	-	69232900	69247844	0	6	2706,47,140,88,38,323,	0,7112,10612,12175,13040,14621,
#Partially deleted in new
chr9	69232900	69247549	T359702_T359702	0	-	69232900	69247549	0	8	2635,45,87,47,140,88,38,28,	0,2661,5329,7112,10612,12175,13040,14621,
#Partially deleted in new
chr9	69232900	69275137	T359716_T359716	0	-	69232900	69275137	0	12	2052,45,87,47,88,38,92,97,87,129,59,2805,	0,2661,5329,7112,12175,13040,22703,23892,26321,36495,39135,39432,
#Partially deleted in new
chr9	69232900	69274961	T359714_T359714	0	-	69232900	69274961	0	13	2052,45,87,47,140,88,38,92,97,87,129,59,2629,	0,2661,5329,7112,10612,12175,13040,22703,23892,26321,36495,39135,39432,
#Partially deleted in new
chr9	69232900	69274324	T359712_T359712	0	-	69232900	69274324	0	12	2052,45,47,140,88,38,92,97,87,129,59,1992,	0,2661,7112,10612,12175,13040,22703,23892,26321,36495,39135,39432,
#Partially deleted in new
chr9	69232900	69275137	T359715_T359715	0	-	69232900	69275137	0	13	2052,45,47,140,88,38,60,92,97,87,129,59,2805,	0,2661,7112,10612,12175,13040,14621,22703,23892,26321,36495,39135,39432,
#Partially deleted in new
chr9	69232900	69245163	T359701_T359701	0	-	69232900	69245163	0	5	1350,45,87,47,88,	0,2661,5329,7112,12175,
#Partially deleted in new
chr9	69232900	69274961	T359713_T359713	0	-	69232900	69274961	0	13	2635,45,87,47,140,88,38,92,97,87,129,59,2629,	0,2661,5329,7112,10612,12175,13040,22703,23892,26321,36495,39135,39432,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	70594937	70654470	T359854_T359854	0	-	70594937	70654470	0	5	667,83,1652,2475,3349,	0,1028,51303,53521,56184,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	70594937	70654470	T359855_T359855	0	-	70594937	70654470	0	5	667,83,2437,4130,658,	0,1028,51303,54454,58875,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	70594937	70654470	T359853_T359853	0	-	70594937	70654470	0	5	667,83,1236,1895,4067,	0,1028,51303,53374,55466,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	70594937	70662071	T359857_T359857	0	-	70594937	70662071	0	5	667,83,1627,5141,7601,	0,1028,51303,53352,59533,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chr9	70594937	70662071	T359859_T359859	0	-	70594937	70662071	0	6	667,83,2073,1513,5346,6402,	0,1028,51303,53516,55225,60732,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	70594937	70652651	T359852_T359852	0	-	70594937	70652651	0	5	667,83,1821,3598,155,	0,1028,51303,53352,57559,
#Partially deleted in new
chr9	70594937	70596632	T359849_T359849	0	-	70594937	70596632	0	2	667,667,	0,1028,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	70600435	70658762	T359860_T359860	0	-	70600435	70658762	0	4	67,2073,6279,1145,	0,45805,48023,57182,
#Partially deleted in new
chr9	70611673	70612498	T359861_T359861	0	-	70611673	70612498	0	2	34,620,	0,205,
#Partially deleted in new
chr9	70615206	70629050	T359864_T359864	0	-	70615206	70629050	0	3	7099,48,23,	0,8342,13821,
#Partially deleted in new
chr9	70615206	70624141	T359862_T359862	0	-	70615206	70624141	0	2	7099,593,	0,8342,
#Partially deleted in new
chr9	70615206	70624556	T359863_T359863	0	-	70615206	70624556	0	3	7099,48,32,	0,8342,9318,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	70630502	70654470	T359867_T359867	0	-	70630502	70654470	0	4	1505,2073,1552,4067,	0,15738,17956,19901,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	92678794	92688128	T362134_T362134	0	+	92678794	92688128	0	2	3253,2080,	0,7254,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	92678794	92688128	T362133_T362133	0	+	92678794	92688128	0	2	7181,1936,	0,7398,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	92678794	92686661	T362131_T362131	0	-	92678794	92686661	0	2	7304,438,	0,7429,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	92678794	92686661	T362130_T362130	0	-	92678794	92686661	0	2	7304,449,	0,7418,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	92678794	92688128	T362132_T362132	0	+	92678794	92688128	0	3	7181,215,316,	0,7398,9018,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr9	136108499	136150993	T368163_T368163	0	-	136108499	136150993	0	7	497,3879,727,48,57,70,416,	0,19365,24296,26723,28221,29002,42078,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	136124990	136137501	T368170_T368170	0	-	136124990	136137501	0	2	11385,781,	0,11730,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	136124990	136137698	T368173_T368173	0	-	136124990	136137698	0	5	6753,134,1784,162,978,	0,7805,8496,11223,11730,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	136124990	136151199	T368193_T368193	0	-	136124990	136151199	0	4	5508,2802,48,622,	0,5730,10232,25587,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	136124990	136151199	T368195_T368195	0	-	136124990	136151199	0	4	5730,869,4776,622,	0,5884,7805,25587,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr9	136124990	136150577	T368176_T368176	0	-	136124990	136150577	0	8	1549,5065,36,48,162,4454,7026,599,	0,2874,8496,10232,11223,11730,17809,24988,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chr9	136124990	136151377	T368200_T368200	0	-	136124990	136151377	0	7	1549,6190,437,48,57,70,800,	0,1749,8095,10232,11730,12511,25587,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chr9	136124990	136135222	T368168_T368168	0	-	136124990	136135222	0	4	1549,2634,44,2970,	0,2874,5730,7262,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chr9	136124990	136150632	T368178_T368178	0	-	136124990	136150632	0	6	1549,26,5496,1153,851,55,	0,2874,3036,10232,11730,25587,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr9	136124990	136151377	T368202_T368202	0	-	136124990	136151377	0	8	1549,5065,437,48,162,57,70,800,	0,2874,8095,10232,11223,11730,12511,25587,
#Boundary problem: need 9, got 8, diff 1, mapped 0.9
chr9	136124990	136150633	T368179_T368179	0	-	136124990	136150633	0	9	1549,3879,134,511,48,175,57,70,56,	0,2874,7805,8021,10232,11223,11730,12511,25587,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	136124990	136151199	T368196_T368196	0	-	136124990	136151199	0	5	1549,6783,48,851,622,	0,1749,10232,11730,25587,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr9	136124990	136150653	T368180_T368180	0	-	136124990	136150653	0	8	1549,3879,134,437,48,57,70,76,	0,2874,7805,8095,10232,11730,12511,25587,
#Boundary problem: need 8, got 7, diff 1, mapped 0.9
chr9	136124990	136151377	T368198_T368198	0	-	136124990	136151377	0	8	1549,5004,134,437,48,57,70,800,	0,1749,7805,8095,10232,11730,12511,25587,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chr9	136124990	136136777	T368169_T368169	0	-	136124990	136136777	0	3	6753,2475,57,	0,7805,11730,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chr9	136125054	136146334	T368209_T368209	0	+	136125054	136146334	0	5	4370,1028,200,5239,8679,	0,4454,5637,6620,12601,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	136179955	136182698	T368218_T368218	0	+	136179955	136182698	0	2	339,1450,	0,1293,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	136261118	136264057	T368260_T368260	0	-	136261118	136264057	0	2	1272,786,	0,2153,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr9	139142954	139166998	T369103_T369103	0	-	139142954	139166998	0	13	4026,77,113,104,70,86,146,152,177,88,134,77,270,	0,4548,5102,5596,7823,8254,9010,11202,12513,14847,16275,16940,23774,
#Boundary problem: need 13, got 12, diff 1, mapped 0.9
chr9	139142954	139166998	T369102_T369102	0	-	139142954	139166998	0	13	4026,143,113,137,70,86,146,152,177,88,134,77,270,	0,4548,5102,5596,7823,8254,9010,11202,12513,14847,16275,16940,23774,
#Boundary problem: need 12, got 11, diff 1, mapped 0.9
chr9	139142954	139166998	T369104_T369104	0	-	139142954	139166998	0	12	4026,667,137,70,86,146,152,177,88,134,77,270,	0,4548,5596,7823,8254,9010,11202,12513,14847,16275,16940,23774,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chr9	141083002	141088286	T370359_T370359	0	+	141083002	141088286	0	2	145,1540,	0,3744,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrM	1	1769	T370377_T370377	0	-	1	1769	0	2	262,69,	0,1699,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chrM	1	16571	T370374_T370374	0	-	1	16571	0	5	332,471,4974,913,1564,	0,5368,9003,14072,15006,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrM	89	16570	T370381_T370381	0	+	89	16570	0	3	201,4942,2539,	0,7645,13942,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrM	3102	16570	T370382_T370382	0	+	3102	16570	0	2	11168,2241,	0,11227,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chrM	3182	15577	T370383_T370383	0	-	3182	15577	0	6	6983,3207,208,47,797,86,	0,7053,10402,10673,10873,12309,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chrM	3182	16568	T370392_T370392	0	-	3182	16568	0	5	3038,213,195,5832,1561,	0,5290,5594,5849,11825,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrM	3182	15577	T370384_T370384	0	-	3182	15577	0	4	5443,148,3396,68,	0,7964,8313,12327,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chrM	3182	16571	T370394_T370394	0	-	3182	16571	0	5	3639,3314,1959,913,1564,	0,5443,8837,10891,11825,
#Boundary problem: need 5, got 3, diff 2, mapped 0.6
chrM	3182	16571	T370395_T370395	0	-	3182	16571	0	5	5503,3147,1959,913,1564,	0,5610,8837,10891,11825,
#Boundary problem: need 4, got 1, diff 3, mapped 0.2
chrM	3182	16561	T370390_T370390	0	-	3182	16561	0	4	5610,4512,484,821,	0,7292,11825,12558,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chrM	3182	15627	T370386_T370386	0	-	3182	15627	0	6	8351,484,9,843,96,44,	0,8438,10664,10817,12251,12401,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chrM	3182	16568	T370391_T370391	0	-	3182	16568	0	4	1326,4718,3368,1561,	0,3375,8313,11825,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrM	3182	16571	T370397_T370397	0	-	3182	16571	0	4	8757,1959,790,1564,	0,8837,10891,11825,
#Boundary problem: need 4, got 2, diff 2, mapped 0.5
chrM	3182	16571	T370396_T370396	0	-	3182	16571	0	4	872,2998,913,1564,	0,7798,10891,11825,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrM	3203	16570	T370399_T370399	0	+	3203	16570	0	2	1095,8971,	0,4396,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chrM	8933	16570	T370401_T370401	0	+	8933	16570	0	3	62,3538,2241,	0,1799,5396,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chrM	12301	16571	T370415_T370415	0	-	12301	16571	0	3	1326,1327,854,	0,1754,3416,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrM	12301	16571	T370413_T370413	0	-	12301	16571	0	2	1152,2716,	0,1554,
#Boundary problem: need 3, got 1, diff 2, mapped 0.3
chrM	12301	16571	T370414_T370414	0	-	12301	16571	0	3	1287,1411,994,	0,1703,3276,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrM	12301	16567	T370411_T370411	0	-	12301	16567	0	2	1339,2512,	0,1754,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrM	12301	16567	T370412_T370412	0	-	12301	16567	0	2	1343,2623,	0,1643,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrM	13687	16567	T370418_T370418	0	-	13687	16567	0	2	99,2500,	0,380,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	281382	288990	T370436_T370436	0	+	281382	288990	0	4	601,1885,179,4237,	0,1035,3078,3371,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	17562899	17578375	T371906_T371906	0	-	17562899	17578375	0	4	2645,111,105,161,	0,3077,14329,15315,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	22270731	22273888	T372332_T372332	0	+	22270731	22273888	0	2	1474,851,	0,2306,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	39121597	39159194	T373228_T373228	0	-	39121597	39159194	0	4	304,123,170,218,	0,536,37019,37379,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	39121597	39159194	T373229_T373229	0	-	39121597	39159194	0	4	304,123,101,218,	0,536,37019,37379,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	45571353	45572730	T373816_T373816	0	+	45571353	45572730	0	2	620,412,	0,965,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	45604474	45607336	T373822_T373822	0	-	45604474	45607336	0	3	1227,741,95,	0,1346,2767,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	45604474	45630610	T373825_T373825	0	-	45604474	45630610	0	4	1227,741,167,1123,	0,1346,24714,25013,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chrX	45604474	45712063	T373827_T373827	0	-	45604474	45712063	0	5	1227,741,167,98,1280,	0,1346,24714,104334,106309,
#Boundary problem: need 6, got 4, diff 2, mapped 0.7
chrX	45649756	45667425	T373838_T373838	0	+	45649756	45667425	0	6	3865,81,5667,83,176,4171,	0,4158,5953,12085,13056,13498,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	45686179	45696122	T373843_T373843	0	+	45686179	45696122	0	2	1339,7891,	0,2052,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	45710390	45715294	T373851_T373851	0	+	45710390	45715294	0	2	101,1029,	0,3875,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	48683318	48685231	T374481_T374481	0	-	48683318	48685231	0	2	1112,288,	0,1625,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	48995596	49012664	T374603_T374603	0	+	48995596	49012664	0	2	6923,9711,	0,7357,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	48995937	49012664	T374604_T374604	0	+	48995937	49012664	0	2	213,15042,	0,1685,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	49055429	49060651	T374646_T374646	0	+	49055429	49060651	0	2	254,2021,	0,3201,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	49126968	49133816	T374725_T374725	0	-	49126968	49133816	0	3	56,4646,1863,	0,233,4985,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	50195995	50206996	T374780_T374780	0	+	50195995	50206996	0	2	871,6721,	0,4280,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	69110794	69120161	T375933_T375933	0	-	69110794	69120161	0	3	1211,152,3066,	0,5715,6301,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	75398048	75410941	T376577_T376577	0	-	75398048	75410941	0	3	6542,5326,768,	0,6684,12125,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	100719159	100738025	T377773_T377773	0	-	100719159	100738025	0	2	6905,3840,	0,15026,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	100883412	100900379	T377799_T377799	0	-	100883412	100900379	0	2	8256,8385,	0,8582,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	103159638	103165359	T378208_T378208	0	+	103159638	103165359	0	2	725,1993,	0,3728,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	113028992	113030720	T378965_T378965	0	-	113028992	113030720	0	2	508,844,	0,884,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	113213158	113220990	T378979_T378979	0	+	113213158	113220990	0	3	159,142,740,	0,5757,7092,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	113213993	113220990	T378980_T378980	0	+	113213993	113220990	0	3	101,142,740,	0,4922,6257,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	113213994	113220990	T378981_T378981	0	+	113213994	113220990	0	3	100,142,753,	0,4921,6243,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	113214072	113220990	T378983_T378983	0	+	113214072	113220990	0	3	22,109,740,	0,4876,6178,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	114443940	114556759	T379027_T379027	0	+	114443940	114556759	0	4	136,132,119,15990,	0,92616,93924,96829,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	114443940	114556759	T379028_T379028	0	+	114443940	114556759	0	3	136,132,15990,	0,92616,96829,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	114524236	114556759	T379031_T379031	0	+	114524236	114556759	0	3	180,132,15990,	0,12320,16533,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	114524236	114556759	T379030_T379030	0	+	114524236	114556759	0	4	180,132,119,15990,	0,12320,13628,16533,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	114524249	114556759	T379032_T379032	0	+	114524249	114556759	0	4	167,132,75,15990,	0,12307,13344,16520,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	114536281	114556759	T379035_T379035	0	+	114536281	114556759	0	2	407,15990,	0,4488,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	114536281	114556759	T379036_T379036	0	+	114536281	114556759	0	3	407,119,15990,	0,1583,4488,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	114952202	114958553	T379093_T379093	0	-	114952202	114958553	0	3	763,3890,1214,	0,821,5137,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrX	114952202	115086161	T379094_T379094	0	-	114952202	115086161	0	3	763,3890,868,	0,821,133091,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chrX	130720639	130745758	T380142_T380142	0	+	130720639	130745758	0	6	52,38,331,150,134,717,	0,873,2023,2451,19530,24402,
#Partially deleted in new
chrX	140048564	140085846	T380939_T380939	0	+	140048564	140085846	0	6	90,89,40,255,185,251,	0,7624,30249,30995,36199,37031,
#Partially deleted in new
chrX	140048564	140085846	T380938_T380938	0	+	140048564	140085846	0	5	90,89,40,255,251,	0,7624,30249,30995,37031,
#Partially deleted in new
chrX	140048728	140085846	T380940_T380940	0	+	140048728	140085846	0	6	78,89,40,255,185,251,	0,7460,30085,30831,36035,36867,
#Partially deleted in new
chrX	140048728	140085846	T380941_T380941	0	+	140048728	140085846	0	5	78,89,255,185,251,	0,7460,30831,36035,36867,
#Partially deleted in new
chrX	140084763	140097886	T380948_T380948	0	+	140084763	140097886	0	3	155,21,286,	0,12169,12837,
#Partially deleted in new
chrX	149565984	149584796	T381640_T381640	0	-	149565984	149584796	0	2	402,70,	0,18742,
#Partially deleted in new
chrX	149583468	149584305	T381642_T381642	0	-	149583468	149584305	0	1	837,	0,
#Partially deleted in new
chrX	151887936	151893898	T381947_T381947	0	-	151887936	151893898	0	2	1905,3959,	0,2003,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chrX	151938275	151978593	T381976_T381976	0	+	151938275	151978593	0	6	86,59,60,110,145,4451,	0,1063,20970,21779,34592,35867,
#Boundary problem: need 7, got 6, diff 1, mapped 0.9
chrX	151938275	151978593	T381978_T381978	0	+	151938275	151978593	0	7	86,59,60,110,98,145,4451,	0,1063,20970,21779,32485,34592,35867,
#Boundary problem: need 6, got 5, diff 1, mapped 0.8
chrX	151938288	151978593	T381981_T381981	0	+	151938288	151978593	0	6	73,59,60,159,145,4451,	0,1050,20957,21717,34579,35854,
#Partially deleted in new
chrX	152338247	152569671	T382057_T382057	0	+	152338247	152569671	0	2	204,896,	0,230528,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	152350272	152358264	T382059_T382059	0	+	152350272	152358264	0	4	53,181,2015,431,	0,4771,5452,7561,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrX	152350289	152358264	T382060_T382060	0	+	152350289	152358264	0	4	36,151,2015,431,	0,4784,5435,7544,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	152486250	152489469	T382068_T382068	0	+	152486250	152489469	0	2	560,1180,	0,2039,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrX	152486360	152541983	T382071_T382071	0	+	152486360	152541983	0	2	450,21,	0,55602,
#Boundary problem: need 2, got 1, diff 1, mapped 0.5
chrY	23951427	23958065	T383944_T383944	0	-	23951427	23958065	0	2	5416,26,	0,6612,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chrY	23951427	23971825	T383948_T383948	0	-	23951427	23971825	0	5	1866,2256,136,162,4066,	0,3160,12795,15926,16332,
#Boundary problem: need 3, got 2, diff 1, mapped 0.7
chrY	23951427	23971825	T383947_T383947	0	-	23951427	23971825	0	3	5416,3293,4066,	0,12795,16332,
#Boundary problem: need 5, got 4, diff 1, mapped 0.8
chrY	23951427	23968097	T383945_T383945	0	-	23951427	23968097	0	5	1866,2256,136,75,338,	0,3160,12795,15926,16332,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrY	23951427	23968145	T383946_T383946	0	-	23951427	23968145	0	4	5416,136,75,386,	0,12795,15926,16332,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrY	23951427	23971825	T383949_T383949	0	-	23951427	23971825	0	4	5416,136,162,4066,	0,12795,15926,16332,
#Boundary problem: need 4, got 3, diff 1, mapped 0.8
chrY	23951427	23971825	T383950_T383950	0	-	23951427	23971825	0	4	1866,2256,162,4066,	0,3160,15926,16332,