# gffcompare v0.10.1 | Command line was:
#/users/rg/buszczynska/bin/gffcompare/gffcompare -N -M -r gen.lncRNAs.hg38.gtf noncode.lncRNAs.hg38.gtf -o noncode.genOverlap
#

#= Summary for dataset: noncode.lncRNAs.hg38.gtf 
#     Query mRNAs :  114269 in   51664 loci  (114269 multi-exon transcripts)
#            (18279 multi-transcript loci, ~2.2 transcripts per locus)
# Reference mRNAs :   23945 in   12185 loci  (23945 multi-exon)
# Super-loci w/ reference transcripts:    11119
#-----------------| Sensitivity | Precision  |
        Base level:    96.2     |    13.9    |
        Exon level:    90.6     |    20.4    |
      Intron level:    94.0     |    20.0    |
Intron chain level:    90.1     |    18.9    |
  Transcript level:    90.1     |    18.9    |
       Locus level:    94.4     |    21.6    |

     Matching intron chains:   21569
       Matching transcripts:   21569
              Matching loci:   11498

          Missed exons:    1795/64307	(  2.8%)
           Novel exons:  194747/300514	( 64.8%)
        Missed introns:    1406/41633	(  3.4%)
         Novel introns:  116949/195371	( 59.9%)
           Missed loci:     164/12185	(  1.3%)
            Novel loci:   38040/51664	( 73.6%)

 Total union super-loci across all input datasets: 51594 
114269 out of 114269 consensus transcripts written in noncode.genOverlap.annotated.gtf (0 discarded as redundant)