# gffcompare v0.10.1 | Command line was:
#/users/rg/buszczynska/bin/gffcompare/gffcompare -N -M -r gen.lncRNAs.hg38.gtf pcConf.lncRNAs.hg38.gtf -o pcConf.genOverlap
#

#= Summary for dataset: pcConf.lncRNAs.hg38.gtf 
#     Query mRNAs :   53133 in   17968 loci  (53133 multi-exon transcripts)
#            (12852 multi-transcript loci, ~3.0 transcripts per locus)
# Reference mRNAs :   23945 in   12185 loci  (23945 multi-exon)
# Super-loci w/ reference transcripts:      829
#-----------------| Sensitivity | Precision  |
        Base level:     1.3     |     0.3    |
        Exon level:     1.1     |     0.3    |
      Intron level:     1.5     |     0.3    |
Intron chain level:     0.0     |     0.0    |
  Transcript level:     0.0     |     0.0    |
       Locus level:     0.0     |     0.0    |

     Matching intron chains:       0
       Matching transcripts:       0
              Matching loci:       0

          Missed exons:   62995/64307	( 98.0%)
           Novel exons:  269967/271449	( 99.5%)
        Missed introns:   39698/41633	( 95.4%)
         Novel introns:  217360/219834	( 98.9%)
           Missed loci:   11298/12185	( 92.7%)
            Novel loci:   17045/17968	( 94.9%)

 Total union super-loci across all input datasets: 17890 
53133 out of 53133 consensus transcripts written in pcConf.genOverlap.annotated.gtf (0 discarded as redundant)