# gffcompare v0.10.1 | Command line was:
#/users/rg/buszczynska/bin/gffcompare/gffcompare -N -M -r gen.lncRNAs.hg38.gtf refseq.lncRNAs.hg38.gtf -o refseq.genOverlap
#

#= Summary for dataset: refseq.lncRNAs.hg38.gtf 
#     Query mRNAs :   27603 in   15112 loci  (27603 multi-exon transcripts)
#            (5178 multi-transcript loci, ~1.8 transcripts per locus)
# Reference mRNAs :   23945 in   12185 loci  (23945 multi-exon)
# Super-loci w/ reference transcripts:     6086
#-----------------| Sensitivity | Precision  |
        Base level:    44.1     |    22.7    |
        Exon level:    30.7     |    25.3    |
      Intron level:    35.3     |    28.5    |
Intron chain level:    19.4     |    16.8    |
  Transcript level:    19.4     |    16.8    |
       Locus level:    31.6     |    25.7    |

     Matching intron chains:    4642
       Matching transcripts:    4642
              Matching loci:    3849

          Missed exons:   31490/64307	( 49.0%)
           Novel exons:   45202/69055	( 65.5%)
        Missed introns:   16666/41633	( 40.0%)
         Novel introns:   31119/51613	( 60.3%)
           Missed loci:    5639/12185	( 46.3%)
            Novel loci:    8504/15112	( 56.3%)

 Total union super-loci across all input datasets: 14829 
27603 out of 27603 consensus transcripts written in refseq.genOverlap.annotated.gtf (0 discarded as redundant)