#Deleted in new
chr10	100190035	100190164	ENSG00000236308.1|AL138921.2|lncRNA|chr10:100190035:100190164:+	0	+
#Partially deleted in new
chr10	100229666	100229724	ENSG00000227492.1|AL138921.1|lncRNA|chr10:100229666:100229724:+	0	+
#Deleted in new
chr10	100282905	100282936	ENSG00000196072.11|BLOC1S2|pc|chr10:100282905:100282936:-	0	-
#Deleted in new
chr10	100335562	100335764	ENSG00000231188.1|AL139819.1|lncRNA|chr10:100335562:100335764:-	0	-
#Deleted in new
chr10	100336980	100337038	ENSG00000231188.1|AL139819.1|lncRNA|chr10:100336980:100337038:-	0	-
#Partially deleted in new
chr10	100373512	100374012	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100373512:100374012:+	0	+
#Partially deleted in new
chr10	100373543	100374012	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100373543:100374012:+	0	+
#Deleted in new
chr10	100380982	100381109	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100380982:100381109:+	0	+
#Deleted in new
chr10	100381215	100381448	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100381215:100381448:+	0	+
#Deleted in new
chr10	100381215	100381455	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100381215:100381455:+	0	+
#Partially deleted in new
chr10	100381215	100383368	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100381215:100383368:+	0	+
#Deleted in new
chr10	100388036	100388360	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100388036:100388360:+	0	+
#Deleted in new
chr10	100394497	100394622	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100394497:100394622:+	0	+
#Deleted in new
chr10	100395108	100395229	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100395108:100395229:+	0	+
#Deleted in new
chr10	100395116	100395229	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100395116:100395229:+	0	+
#Deleted in new
chr10	100406648	100409605	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100406648:100409605:+	0	+
#Deleted in new
chr10	100440647	100440791	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100440647:100440791:+	0	+
#Deleted in new
chr10	100442834	100442887	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100442834:100442887:+	0	+
#Partially deleted in new
chr10	100443568	100443728	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100443568:100443728:+	0	+
#Deleted in new
chr10	100450807	100450928	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100450807:100450928:+	0	+
#Deleted in new
chr10	100453989	100454043	ENSG00000235823.2|OLMALINC|lncRNA|chr10:100453989:100454043:+	0	+
#Partially deleted in new
chr10	100925948	100926760	ENSG00000119906.11|SLF2|pc|chr10:100925948:100926760:+	0	+
#Deleted in new
chr10	101017331	101017615	ENSG00000186862.17|PDZD7|pc|chr10:101017331:101017615:-	0	-
#Deleted in new
chr10	101090307	101090702	ENSG00000236311.6|TLX1NB|lncRNA|chr10:101090307:101090702:-	0	-
#Deleted in new
chr10	101176322	101176697	ENSG00000237579.2|LINC01514|lncRNA|chr10:101176322:101176697:+	0	+
#Deleted in new
chr10	101176988	101177102	ENSG00000237579.2|LINC01514|lncRNA|chr10:101176988:101177102:+	0	+
#Deleted in new
chr10	101193697	101194147	ENSG00000237579.2|LINC01514|lncRNA|chr10:101193697:101194147:+	0	+
#Deleted in new
chr10	101269967	101270148	ENSG00000227128.4|LBX1-AS1|lncRNA|chr10:101269967:101270148:+	0	+
#Partially deleted in new
chr10	101453500	101453556	ENSG00000166167.17|BTRC|pc|chr10:101453500:101453556:+	0	+
#Partially deleted in new
chr10	101780295	101780369	ENSG00000107831.12|FGF8|pc|chr10:101780295:101780369:-	0	-
#Deleted in new
chr10	102449816	102450022	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102449816:102450022:+	0	+
#Deleted in new
chr10	102449830	102450022	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102449830:102450022:+	0	+
#Deleted in new
chr10	102449852	102450022	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102449852:102450022:+	0	+
#Deleted in new
chr10	102450186	102450330	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102450186:102450330:+	0	+
#Deleted in new
chr10	102450186	102450360	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102450186:102450360:+	0	+
#Deleted in new
chr10	102450192	102450330	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102450192:102450330:+	0	+
#Deleted in new
chr10	102451601	102453539	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102451601:102453539:+	0	+
#Deleted in new
chr10	102452089	102452187	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102452089:102452187:+	0	+
#Deleted in new
chr10	102453839	102456292	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102453839:102456292:+	0	+
#Deleted in new
chr10	102455336	102455427	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102455336:102455427:+	0	+
#Deleted in new
chr10	102455336	102455883	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102455336:102455883:+	0	+
#Deleted in new
chr10	102455336	102456293	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102455336:102456293:+	0	+
#Deleted in new
chr10	102455336	102456297	ENSG00000269609.5|RPARP-AS1|lncRNA|chr10:102455336:102456297:+	0	+
#Deleted in new
chr10	102468286	102468332	ENSG00000138111.14|MFSD13A|pc|chr10:102468286:102468332:+	0	+
#Deleted in new
chr10	102468286	102468640	ENSG00000138111.14|MFSD13A|pc|chr10:102468286:102468640:+	0	+
#Deleted in new
chr10	102472021	102472247	ENSG00000138111.14|MFSD13A|pc|chr10:102472021:102472247:+	0	+
#Deleted in new
chr10	102472021	102472250	ENSG00000138111.14|MFSD13A|pc|chr10:102472021:102472250:+	0	+
#Deleted in new
chr10	1025815	1025859	ENSG00000148377.5|IDI2|pc|chr10:1025815:1025859:-	0	-
#Deleted in new
chr10	102590808	102591044	ENSG00000107882.11|SUFU|pc|chr10:102590808:102591044:+	0	+
#Deleted in new
chr10	102715222	102715328	ENSG00000156398.12|SFXN2|pc|chr10:102715222:102715328:+	0	+
#Deleted in new
chr10	102716588	102716711	ENSG00000156398.12|SFXN2|pc|chr10:102716588:102716711:+	0	+
#Deleted in new
chr10	102716613	102716711	ENSG00000156398.12|SFXN2|pc|chr10:102716613:102716711:+	0	+
#Deleted in new
chr10	102724935	102724996	ENSG00000156398.12|SFXN2|pc|chr10:102724935:102724996:+	0	+
#Partially deleted in new
chr10	102737662	102743492	ENSG00000156398.12|SFXN2|pc|chr10:102737662:102743492:+	0	+
#Partially deleted in new
chr10	102845982	102846303	ENSG00000282772.1|AL358790.1|lncRNA|chr10:102845982:102846303:-	0	-
#Deleted in new
chr10	102846114	102846303	ENSG00000282772.1|AL358790.1|lncRNA|chr10:102846114:102846303:-	0	-
#Deleted in new
chr10	102851507	102851605	ENSG00000282772.1|AL358790.1|lncRNA|chr10:102851507:102851605:-	0	-
#Deleted in new
chr10	102851507	102851629	ENSG00000282772.1|AL358790.1|lncRNA|chr10:102851507:102851629:-	0	-
#Partially deleted in new
chr10	102862872	102864961	ENSG00000166275.15|BORCS7|pc|chr10:102862872:102864961:+	0	+
#Deleted in new
chr10	102927344	102927618	ENSG00000148842.17|CNNM2|pc|chr10:102927344:102927618:+	0	+
#Deleted in new
chr10	103105357	103105381	ENSG00000076685.18|NT5C2|pc|chr10:103105357:103105381:-	0	-
#Deleted in new
chr10	103140116	103140192	ENSG00000076685.18|NT5C2|pc|chr10:103140116:103140192:-	0	-
#Deleted in new
chr10	103169283	103169449	ENSG00000076685.18|NT5C2|pc|chr10:103169283:103169449:-	0	-
#Deleted in new
chr10	103181184	103181320	ENSG00000076685.18|NT5C2|pc|chr10:103181184:103181320:-	0	-
#Deleted in new
chr10	103399646	103399830	ENSG00000148843.13|PDCD11|pc|chr10:103399646:103399830:+	0	+
#Deleted in new
chr10	103462429	103462695	ENSG00000234699.1|AL139339.1|lncRNA|chr10:103462429:103462695:+	0	+
#Partially deleted in new
chr10	103479602	103479997	ENSG00000235470.5|NEURL1-AS1|lncRNA|chr10:103479602:103479997:-	0	-
#Deleted in new
chr10	103517385	103517393	ENSG00000235470.5|NEURL1-AS1|lncRNA|chr10:103517385:103517393:-	0	-
#Deleted in new
chr10	1035289	1035422	ENSG00000232656.7|IDI2-AS1|lncRNA|chr10:1035289:1035422:+	0	+
#Deleted in new
chr10	1035289	1035506	ENSG00000232656.7|IDI2-AS1|lncRNA|chr10:1035289:1035506:+	0	+
#Deleted in new
chr10	103550518	103550964	ENSG00000226431.1|AL121929.1|lncRNA|chr10:103550518:103550964:+	0	+
#Deleted in new
chr10	1035813	1035921	ENSG00000232656.7|IDI2-AS1|lncRNA|chr10:1035813:1035921:+	0	+
#Deleted in new
chr10	1035813	1035976	ENSG00000232656.7|IDI2-AS1|lncRNA|chr10:1035813:1035976:+	0	+
#Deleted in new
chr10	103608618	103610050	ENSG00000273108.1|AL121929.2|lncRNA|chr10:103608618:103610050:+	0	+
#Deleted in new
chr10	103673437	103673556	ENSG00000107957.16|SH3PXD2A|pc|chr10:103673437:103673556:-	0	-
#Deleted in new
chr10	1036788	1036893	ENSG00000232656.7|IDI2-AS1|lncRNA|chr10:1036788:1036893:+	0	+
#Deleted in new
chr10	1036822	1036893	ENSG00000232656.7|IDI2-AS1|lncRNA|chr10:1036822:1036893:+	0	+
#Deleted in new
chr10	103745965	103746159	ENSG00000280693.2|SH3PXD2A-AS1|lncRNA|chr10:103745965:103746159:+	0	+
#Deleted in new
chr10	103749781	103749920	ENSG00000280693.2|SH3PXD2A-AS1|lncRNA|chr10:103749781:103749920:+	0	+
#Partially deleted in new
chr10	10394669	10395737	ENSG00000279575.1|AL583859.3|lncRNA|chr10:10394669:10395737:+	0	+
#Deleted in new
chr10	104039444	104039519	ENSG00000065618.18|COL17A1|pc|chr10:104039444:104039519:-	0	-
#Deleted in new
chr10	104039607	104039640	ENSG00000065618.18|COL17A1|pc|chr10:104039607:104039640:-	0	-
#Deleted in new
chr10	104063537	104063643	ENSG00000065618.18|COL17A1|pc|chr10:104063537:104063643:-	0	-
#Deleted in new
chr10	10419537	10419596	ENSG00000270111.2|AL583859.2|lncRNA|chr10:10419537:10419596:-	0	-
#Deleted in new
chr10	104235355	104235436	ENSG00000148834.12|GSTO1|pc|chr10:104235355:104235436:+	0	+
#Deleted in new
chr10	104252165	104252189	ENSG00000148834.12|GSTO1|pc|chr10:104252165:104252189:+	0	+
#Deleted in new
chr10	104254163	104254499	ENSG00000148834.12|GSTO1|pc|chr10:104254163:104254499:+	0	+
#Deleted in new
chr10	104254193	104254499	ENSG00000148834.12|GSTO1|pc|chr10:104254193:104254499:+	0	+
#Deleted in new
chr10	104254463	104254573	ENSG00000148834.12|GSTO1|pc|chr10:104254463:104254573:+	0	+
#Deleted in new
chr10	104285934	104285990	ENSG00000065621.14|GSTO2|pc|chr10:104285934:104285990:+	0	+
#Deleted in new
chr10	104285937	104285990	ENSG00000065621.14|GSTO2|pc|chr10:104285937:104285990:+	0	+
#Deleted in new
chr10	104288382	104288488	ENSG00000065621.14|GSTO2|pc|chr10:104288382:104288488:+	0	+
#Deleted in new
chr10	104294984	104295109	ENSG00000065621.14|GSTO2|pc|chr10:104294984:104295109:+	0	+
#Partially deleted in new
chr10	104295274	104297684	ENSG00000065621.14|GSTO2|pc|chr10:104295274:104297684:+	0	+
#Deleted in new
chr10	10433923	10434031	ENSG00000270111.2|AL583859.2|lncRNA|chr10:10433923:10434031:-	0	-
#Deleted in new
chr10	104351590	104351927	ENSG00000231233.1|CFAP58-AS1|lncRNA|chr10:104351590:104351927:-	0	-
#Partially deleted in new
chr10	1043528	1043586	ENSG00000232656.7|IDI2-AS1|lncRNA|chr10:1043528:1043586:+	0	+
#Partially deleted in new
chr10	1043528	1043683	ENSG00000232656.7|IDI2-AS1|lncRNA|chr10:1043528:1043683:+	0	+
#Deleted in new
chr10	104353117	104353575	ENSG00000231233.1|CFAP58-AS1|lncRNA|chr10:104353117:104353575:-	0	-
#Partially deleted in new
chr10	1043588	1043681	ENSG00000232656.7|IDI2-AS1|lncRNA|chr10:1043588:1043681:+	0	+
#Deleted in new
chr10	104616101	104616153	ENSG00000237761.1|AL161646.2|lncRNA|chr10:104616101:104616153:+	0	+
#Deleted in new
chr10	1049537	1049641	ENSG00000047056.14|WDR37|pc|chr10:1049537:1049641:+	0	+
#Deleted in new
chr10	105817917	105818026	ENSG00000229466.1|AL731574.1|lncRNA|chr10:105817917:105818026:-	0	-
#Deleted in new
chr10	105819067	105819197	ENSG00000229466.1|AL731574.1|lncRNA|chr10:105819067:105819197:-	0	-
#Deleted in new
chr10	106140263	106140326	ENSG00000229775.6|AL353148.1|lncRNA|chr10:106140263:106140326:+	0	+
#Deleted in new
chr10	106140290	106140326	ENSG00000229775.6|AL353148.1|lncRNA|chr10:106140290:106140326:+	0	+
#Deleted in new
chr10	106163347	106163830	ENSG00000229775.6|AL353148.1|lncRNA|chr10:106163347:106163830:+	0	+
#Deleted in new
chr10	106183785	106183898	ENSG00000229775.6|AL353148.1|lncRNA|chr10:106183785:106183898:+	0	+
#Deleted in new
chr10	106184384	106184594	ENSG00000229775.6|AL353148.1|lncRNA|chr10:106184384:106184594:+	0	+
#Deleted in new
chr10	106184546	106184594	ENSG00000229775.6|AL353148.1|lncRNA|chr10:106184546:106184594:+	0	+
#Partially deleted in new
chr10	106187528	106187795	ENSG00000229775.6|AL353148.1|lncRNA|chr10:106187528:106187795:+	0	+
#Deleted in new
chr10	106667083	106667308	ENSG00000108018.15|SORCS1|pc|chr10:106667083:106667308:-	0	-
#Deleted in new
chr10	1074382	1074508	ENSG00000047056.14|WDR37|pc|chr10:1074382:1074508:+	0	+
#Deleted in new
chr10	107757832	107758068	ENSG00000229981.7|LINC01435|lncRNA|chr10:107757832:107758068:-	0	-
#Deleted in new
chr10	107760822	107760875	ENSG00000229981.7|LINC01435|lncRNA|chr10:107760822:107760875:-	0	-
#Deleted in new
chr10	10784436	10784669	ENSG00000225383.7|SFTA1P|lncRNA|chr10:10784436:10784669:-	0	-
#Deleted in new
chr10	10784437	10784669	ENSG00000225383.7|SFTA1P|lncRNA|chr10:10784437:10784669:-	0	-
#Deleted in new
chr10	10784438	10784669	ENSG00000225383.7|SFTA1P|lncRNA|chr10:10784438:10784669:-	0	-
#Deleted in new
chr10	10784442	10784669	ENSG00000225383.7|SFTA1P|lncRNA|chr10:10784442:10784669:-	0	-
#Deleted in new
chr10	107853157	107853360	ENSG00000229981.7|LINC01435|lncRNA|chr10:107853157:107853360:-	0	-
#Deleted in new
chr10	107854434	107854483	ENSG00000229981.7|LINC01435|lncRNA|chr10:107854434:107854483:-	0	-
#Deleted in new
chr10	107859148	107859227	ENSG00000229981.7|LINC01435|lncRNA|chr10:107859148:107859227:-	0	-
#Deleted in new
chr10	107871575	107871753	ENSG00000229981.7|LINC01435|lncRNA|chr10:107871575:107871753:-	0	-
#Deleted in new
chr10	107871581	107871753	ENSG00000229981.7|LINC01435|lncRNA|chr10:107871581:107871753:-	0	-
#Deleted in new
chr10	107871640	107871753	ENSG00000229981.7|LINC01435|lncRNA|chr10:107871640:107871753:-	0	-
#Deleted in new
chr10	107873760	107873852	ENSG00000229981.7|LINC01435|lncRNA|chr10:107873760:107873852:-	0	-
#Deleted in new
chr10	10788993	10789036	ENSG00000225383.7|SFTA1P|lncRNA|chr10:10788993:10789036:-	0	-
#Deleted in new
chr10	107903081	107903166	ENSG00000229981.7|LINC01435|lncRNA|chr10:107903081:107903166:-	0	-
#Deleted in new
chr10	107909437	107909556	ENSG00000229981.7|LINC01435|lncRNA|chr10:107909437:107909556:-	0	-
#Partially deleted in new
chr10	107932237	107932440	ENSG00000229981.7|LINC01435|lncRNA|chr10:107932237:107932440:-	0	-
#Deleted in new
chr10	10794697	10794914	ENSG00000225383.7|SFTA1P|lncRNA|chr10:10794697:10794914:-	0	-
#Deleted in new
chr10	107947275	107947474	ENSG00000229981.7|LINC01435|lncRNA|chr10:107947275:107947474:-	0	-
#Deleted in new
chr10	10794838	10794957	ENSG00000225383.7|SFTA1P|lncRNA|chr10:10794838:10794957:-	0	-
#Deleted in new
chr10	10794838	10794967	ENSG00000225383.7|SFTA1P|lncRNA|chr10:10794838:10794967:-	0	-
#Deleted in new
chr10	10794838	10794980	ENSG00000225383.7|SFTA1P|lncRNA|chr10:10794838:10794980:-	0	-
#Deleted in new
chr10	107958218	107958301	ENSG00000229981.7|LINC01435|lncRNA|chr10:107958218:107958301:-	0	-
#Deleted in new
chr10	107959016	107959069	ENSG00000229981.7|LINC01435|lncRNA|chr10:107959016:107959069:-	0	-
#Deleted in new
chr10	107962903	107963048	ENSG00000229981.7|LINC01435|lncRNA|chr10:107962903:107963048:-	0	-
#Deleted in new
chr10	107964322	107964518	ENSG00000229981.7|LINC01435|lncRNA|chr10:107964322:107964518:-	0	-
#Partially deleted in new
chr10	107968354	107968471	ENSG00000229981.7|LINC01435|lncRNA|chr10:107968354:107968471:-	0	-
#Partially deleted in new
chr10	108001010	108001338	ENSG00000229981.7|LINC01435|lncRNA|chr10:108001010:108001338:-	0	-
#Deleted in new
chr10	108038611	108038719	ENSG00000229981.7|LINC01435|lncRNA|chr10:108038611:108038719:-	0	-
#Partially deleted in new
chr10	108039844	108040498	ENSG00000229981.7|LINC01435|lncRNA|chr10:108039844:108040498:-	0	-
#Deleted in new
chr10	108043177	108043324	ENSG00000229981.7|LINC01435|lncRNA|chr10:108043177:108043324:-	0	-
#Deleted in new
chr10	108046445	108046560	ENSG00000229981.7|LINC01435|lncRNA|chr10:108046445:108046560:-	0	-
#Deleted in new
chr10	108046686	108046784	ENSG00000229981.7|LINC01435|lncRNA|chr10:108046686:108046784:-	0	-
#Deleted in new
chr10	108048129	108048308	ENSG00000229981.7|LINC01435|lncRNA|chr10:108048129:108048308:-	0	-
#Deleted in new
chr10	108049271	108049346	ENSG00000229981.7|LINC01435|lncRNA|chr10:108049271:108049346:-	0	-
#Deleted in new
chr10	108053430	108053489	ENSG00000229981.7|LINC01435|lncRNA|chr10:108053430:108053489:-	0	-
#Deleted in new
chr10	108058845	108058917	ENSG00000229981.7|LINC01435|lncRNA|chr10:108058845:108058917:-	0	-
#Deleted in new
chr10	108060611	108060755	ENSG00000229981.7|LINC01435|lncRNA|chr10:108060611:108060755:-	0	-
#Deleted in new
chr10	108069181	108069293	ENSG00000229981.7|LINC01435|lncRNA|chr10:108069181:108069293:-	0	-
#Deleted in new
chr10	108069181	108069294	ENSG00000229981.7|LINC01435|lncRNA|chr10:108069181:108069294:-	0	-
#Partially deleted in new
chr10	108070456	108070626	ENSG00000229981.7|LINC01435|lncRNA|chr10:108070456:108070626:-	0	-
#Deleted in new
chr10	108111496	108111602	ENSG00000229981.7|LINC01435|lncRNA|chr10:108111496:108111602:-	0	-
#Deleted in new
chr10	108197727	108197777	ENSG00000229981.7|LINC01435|lncRNA|chr10:108197727:108197777:-	0	-
#Deleted in new
chr10	108197735	108197849	ENSG00000229981.7|LINC01435|lncRNA|chr10:108197735:108197849:-	0	-
#Deleted in new
chr10	108547974	108548357	ENSG00000203434.2|AL353740.1|lncRNA|chr10:108547974:108548357:-	0	-
#Deleted in new
chr10	108549904	108549957	ENSG00000203434.2|AL353740.1|lncRNA|chr10:108549904:108549957:-	0	-
#Deleted in new
chr10	108561676	108561815	ENSG00000203434.2|AL353740.1|lncRNA|chr10:108561676:108561815:-	0	-
#Deleted in new
chr10	108710517	108710535	ENSG00000223381.1|AL356476.1|lncRNA|chr10:108710517:108710535:+	0	+
#Deleted in new
chr10	108838952	108839363	ENSG00000223381.1|AL356476.1|lncRNA|chr10:108838952:108839363:+	0	+
#Deleted in new
chr10	10927057	10927233	ENSG00000229240.8|LINC00710|lncRNA|chr10:10927057:10927233:-	0	-
#Deleted in new
chr10	10944182	10944324	ENSG00000229240.8|LINC00710|lncRNA|chr10:10944182:10944324:-	0	-
#Deleted in new
chr10	10946785	10946802	ENSG00000229240.8|LINC00710|lncRNA|chr10:10946785:10946802:-	0	-
#Deleted in new
chr10	10948252	10948335	ENSG00000229240.8|LINC00710|lncRNA|chr10:10948252:10948335:-	0	-
#Deleted in new
chr10	10948252	10948401	ENSG00000229240.8|LINC00710|lncRNA|chr10:10948252:10948401:-	0	-
#Partially deleted in new
chr10	1096270	1096625	ENSG00000047056.14|WDR37|pc|chr10:1096270:1096625:+	0	+
#Deleted in new
chr10	10970683	10970816	ENSG00000231496.1|AL136369.2|lncRNA|chr10:10970683:10970816:+	0	+
#Deleted in new
chr10	109891265	109891354	ENSG00000108039.17|XPNPEP1|pc|chr10:109891265:109891354:-	0	-
#Partially deleted in new
chr10	109894015	109894110	ENSG00000108039.17|XPNPEP1|pc|chr10:109894015:109894110:-	0	-
#Deleted in new
chr10	109951843	109951965	ENSG00000203876.9|ADD3-AS1|lncRNA|chr10:109951843:109951965:-	0	-
#Partially deleted in new
chr10	109951843	109957911	ENSG00000203876.9|ADD3-AS1|lncRNA|chr10:109951843:109957911:-	0	-
#Deleted in new
chr10	109953755	109953891	ENSG00000203876.9|ADD3-AS1|lncRNA|chr10:109953755:109953891:-	0	-
#Deleted in new
chr10	11010163	11010194	ENSG00000228027.1|AL136369.1|lncRNA|chr10:11010163:11010194:-	0	-
#Deleted in new
chr10	110112140	110112355	ENSG00000148700.14|ADD3|pc|chr10:110112140:110112355:+	0	+
#Deleted in new
chr10	110245742	110245818	ENSG00000119950.20|MXI1|pc|chr10:110245742:110245818:+	0	+
#Deleted in new
chr10	110435123	110435207	ENSG00000273143.1|AL355512.1|lncRNA|chr10:110435123:110435207:-	0	-
#Deleted in new
chr10	110475103	110475226	ENSG00000273143.1|AL355512.1|lncRNA|chr10:110475103:110475226:-	0	-
#Deleted in new
chr10	110496118	110496187	ENSG00000273143.1|AL355512.1|lncRNA|chr10:110496118:110496187:-	0	-
#Deleted in new
chr10	110496118	110496204	ENSG00000273143.1|AL355512.1|lncRNA|chr10:110496118:110496204:-	0	-
#Deleted in new
chr10	11071540	11071694	ENSG00000237986.3|CELF2-AS2|lncRNA|chr10:11071540:11071694:-	0	-
#Deleted in new
chr10	11074947	11075335	ENSG00000237986.3|CELF2-AS2|lncRNA|chr10:11074947:11075335:-	0	-
#Partially deleted in new
chr10	110835177	110835691	ENSG00000203867.7|RBM20|pc|chr10:110835177:110835691:+	0	+
#Deleted in new
chr10	110869742	110869841	ENSG00000232470.1|AL136368.1|lncRNA|chr10:110869742:110869841:+	0	+
#Partially deleted in new
chr10	110869867	110870438	ENSG00000203497.2|PDCD4-AS1|lncRNA|chr10:110869867:110870438:-	0	-
#Deleted in new
chr10	110876669	110876753	ENSG00000150593.17|PDCD4|pc|chr10:110876669:110876753:+	0	+
#Partially deleted in new
chr10	110901025	110901122	ENSG00000214413.7|BBIP1|pc|chr10:110901025:110901122:-	0	-
#Deleted in new
chr10	110906478	110907836	ENSG00000214413.7|BBIP1|pc|chr10:110906478:110907836:-	0	-
#Deleted in new
chr10	110907482	110908182	ENSG00000278601.1|AL158163.2|lncRNA|chr10:110907482:110908182:+	0	+
#Deleted in new
chr10	110907679	110907836	ENSG00000214413.7|BBIP1|pc|chr10:110907679:110907836:-	0	-
#Deleted in new
chr10	11092275	11092395	ENSG00000237986.3|CELF2-AS2|lncRNA|chr10:11092275:11092395:-	0	-
#Deleted in new
chr10	110951607	110951792	ENSG00000108061.11|SHOC2|pc|chr10:110951607:110951792:+	0	+
#Deleted in new
chr10	111351936	111352103	ENSG00000227851.1|AC021035.1|lncRNA|chr10:111351936:111352103:-	0	-
#Partially deleted in new
chr10	112395812	112396400	ENSG00000232934.7|AL157786.1|lncRNA|chr10:112395812:112396400:-	0	-
#Deleted in new
chr10	112406170	112406348	ENSG00000232934.7|AL157786.1|lncRNA|chr10:112406170:112406348:-	0	-
#Deleted in new
chr10	112406273	112406348	ENSG00000232934.7|AL157786.1|lncRNA|chr10:112406273:112406348:-	0	-
#Deleted in new
chr10	112406293	112406348	ENSG00000232934.7|AL157786.1|lncRNA|chr10:112406293:112406348:-	0	-
#Deleted in new
chr10	112406562	112406651	ENSG00000232934.7|AL157786.1|lncRNA|chr10:112406562:112406651:-	0	-
#Deleted in new
chr10	112406562	112406674	ENSG00000232934.7|AL157786.1|lncRNA|chr10:112406562:112406674:-	0	-
#Deleted in new
chr10	112418783	112418848	ENSG00000232934.7|AL157786.1|lncRNA|chr10:112418783:112418848:-	0	-
#Deleted in new
chr10	112890965	112891072	ENSG00000225292.2|AL158212.1|lncRNA|chr10:112890965:112891072:+	0	+
#Deleted in new
chr10	113679161	113679349	ENSG00000165806.19|CASP7|pc|chr10:113679161:113679349:+	0	+
#Deleted in new
chr10	113679182	113679349	ENSG00000165806.19|CASP7|pc|chr10:113679182:113679349:+	0	+
#Deleted in new
chr10	113679203	113679349	ENSG00000165806.19|CASP7|pc|chr10:113679203:113679349:+	0	+
#Deleted in new
chr10	113679668	113679978	ENSG00000165806.19|CASP7|pc|chr10:113679668:113679978:+	0	+
#Deleted in new
chr10	113679876	113679978	ENSG00000165806.19|CASP7|pc|chr10:113679876:113679978:+	0	+
#Deleted in new
chr10	113679939	113679978	ENSG00000165806.19|CASP7|pc|chr10:113679939:113679978:+	0	+
#Deleted in new
chr10	113691963	113692070	ENSG00000165806.19|CASP7|pc|chr10:113691963:113692070:+	0	+
#Deleted in new
chr10	113691971	113692070	ENSG00000165806.19|CASP7|pc|chr10:113691971:113692070:+	0	+
#Deleted in new
chr10	113691996	113692070	ENSG00000165806.19|CASP7|pc|chr10:113691996:113692070:+	0	+
#Deleted in new
chr10	113719209	113719643	ENSG00000165806.19|CASP7|pc|chr10:113719209:113719643:+	0	+
#Deleted in new
chr10	113719212	113719332	ENSG00000234393.1|AL592546.1|lncRNA|chr10:113719212:113719332:-	0	-
#Deleted in new
chr10	113725816	113725890	ENSG00000165806.19|CASP7|pc|chr10:113725816:113725890:+	0	+
#Deleted in new
chr10	113777409	113777726	ENSG00000148735.14|PLEKHS1|pc|chr10:113777409:113777726:+	0	+
#Deleted in new
chr10	113777409	113777730	ENSG00000148735.14|PLEKHS1|pc|chr10:113777409:113777730:+	0	+
#Duplicated in new
chr10	113780601	113782432	ENSG00000148735.14|PLEKHS1|pc|chr10:113780601:113782432:+	0	+
#Duplicated in new
chr10	113780601	113782433	ENSG00000148735.14|PLEKHS1|pc|chr10:113780601:113782433:+	0	+
#Deleted in new
chr10	114280724	114281258	ENSG00000275024.1|AC005383.1|lncRNA|chr10:114280724:114281258:-	0	-
#Partially deleted in new
chr10	114424444	114427398	ENSG00000279796.1|AL133384.2|lncRNA|chr10:114424444:114427398:-	0	-
#Deleted in new
chr10	114764787	114764992	ENSG00000228484.1|AL137025.1|lncRNA|chr10:114764787:114764992:+	0	+
#Deleted in new
chr10	114775941	114776161	ENSG00000228484.1|AL137025.1|lncRNA|chr10:114775941:114776161:+	0	+
#Deleted in new
chr10	114777950	114779903	ENSG00000228484.1|AL137025.1|lncRNA|chr10:114777950:114779903:+	0	+
#Deleted in new
chr10	114899489	114899832	ENSG00000151553.14|FAM160B1|pc|chr10:114899489:114899832:+	0	+
#Deleted in new
chr10	115220373	115220460	ENSG00000107518.16|ATRNL1|pc|chr10:115220373:115220460:+	0	+
#Deleted in new
chr10	115597592	115597982	ENSG00000107518.16|ATRNL1|pc|chr10:115597592:115597982:+	0	+
#Deleted in new
chr10	1159767	1159990	ENSG00000229205.2|LINC00200|lncRNA|chr10:1159767:1159990:+	0	+
#Deleted in new
chr10	1159803	1159990	ENSG00000229205.2|LINC00200|lncRNA|chr10:1159803:1159990:+	0	+
#Deleted in new
chr10	1160552	1160637	ENSG00000229205.2|LINC00200|lncRNA|chr10:1160552:1160637:+	0	+
#Deleted in new
chr10	1160552	1160997	ENSG00000229205.2|LINC00200|lncRNA|chr10:1160552:1160997:+	0	+
#Deleted in new
chr10	1162546	1164672	ENSG00000229205.2|LINC00200|lncRNA|chr10:1162546:1164672:+	0	+
#Deleted in new
chr10	116324427	116324613	ENSG00000182645.5|CCDC172|pc|chr10:116324427:116324613:+	0	+
#Deleted in new
chr10	116379322	116380029	ENSG00000182645.5|CCDC172|pc|chr10:116379322:116380029:+	0	+
#Deleted in new
chr10	116427866	116428061	ENSG00000203837.4|PNLIPRP3|pc|chr10:116427866:116428061:+	0	+
#Deleted in new
chr10	116471767	116471879	ENSG00000203837.4|PNLIPRP3|pc|chr10:116471767:116471879:+	0	+
#Deleted in new
chr10	116476651	116476819	ENSG00000203837.4|PNLIPRP3|pc|chr10:116476651:116476819:+	0	+
#Deleted in new
chr10	116593744	116593912	ENSG00000187021.14|PNLIPRP1|pc|chr10:116593744:116593912:+	0	+
#Deleted in new
chr10	116864345	116864351	ENSG00000188316.13|ENO4|pc|chr10:116864345:116864351:+	0	+
#Deleted in new
chr10	117168859	117169059	ENSG00000234474.2|MIR3663HG|lncRNA|chr10:117168859:117169059:-	0	-
#Deleted in new
chr10	117314163	117314235	ENSG00000165650.11|PDZD8|pc|chr10:117314163:117314235:-	0	-
#Deleted in new
chr10	117425193	117425352	ENSG00000258114.1|AC005871.2|lncRNA|chr10:117425193:117425352:+	0	+
#Deleted in new
chr10	117436215	117436324	ENSG00000258114.1|AC005871.2|lncRNA|chr10:117436215:117436324:+	0	+
#Deleted in new
chr10	117473214	117473422	ENSG00000229847.8|EMX2OS|lncRNA|chr10:117473214:117473422:-	0	-
#Deleted in new
chr10	117473236	117473422	ENSG00000229847.8|EMX2OS|lncRNA|chr10:117473236:117473422:-	0	-
#Deleted in new
chr10	117473298	117473422	ENSG00000229847.8|EMX2OS|lncRNA|chr10:117473298:117473422:-	0	-
#Partially deleted in new
chr10	117476356	117477173	ENSG00000229847.8|EMX2OS|lncRNA|chr10:117476356:117477173:-	0	-
#Partially deleted in new
chr10	117476455	117476919	ENSG00000229847.8|EMX2OS|lncRNA|chr10:117476455:117476919:-	0	-
#Partially deleted in new
chr10	117484294	117490911	ENSG00000229847.8|EMX2OS|lncRNA|chr10:117484294:117490911:-	0	-
#Deleted in new
chr10	117485952	117486228	ENSG00000229847.8|EMX2OS|lncRNA|chr10:117485952:117486228:-	0	-
#Deleted in new
chr10	117492020	117492109	ENSG00000229847.8|EMX2OS|lncRNA|chr10:117492020:117492109:-	0	-
#Deleted in new
chr10	117572295	117572457	ENSG00000235198.1|AC005871.1|lncRNA|chr10:117572295:117572457:-	0	-
#Deleted in new
chr10	117735312	117735351	ENSG00000234952.1|AL139121.1|lncRNA|chr10:117735312:117735351:+	0	+
#Partially deleted in new
chr10	117825902	117826179	ENSG00000263041.1|AL513324.1|lncRNA|chr10:117825902:117826179:-	0	-
#Deleted in new
chr10	117826271	117826384	ENSG00000263041.1|AL513324.1|lncRNA|chr10:117826271:117826384:-	0	-
#Deleted in new
chr10	118052130	118052196	ENSG00000177640.15|CASC2|lncRNA|chr10:118052130:118052196:+	0	+
#Deleted in new
chr10	118247698	118247843	ENSG00000238276.5|AL354863.1|lncRNA|chr10:118247698:118247843:+	0	+
#Deleted in new
chr10	118247698	118247873	ENSG00000238276.5|AL354863.1|lncRNA|chr10:118247698:118247873:+	0	+
#Deleted in new
chr10	118309534	118309580	ENSG00000165669.13|FAM204A|pc|chr10:118309534:118309580:-	0	-
#Deleted in new
chr10	118364712	118365103	ENSG00000232139.5|LINC00867|lncRNA|chr10:118364712:118365103:+	0	+
#Deleted in new
chr10	11862816	11862930	ENSG00000225778.5|PROSER2-AS1|lncRNA|chr10:11862816:11862930:-	0	-
#Deleted in new
chr10	11862911	11863042	ENSG00000148426.12|PROSER2|pc|chr10:11862911:11863042:+	0	+
#Partially deleted in new
chr10	1186502	1186566	ENSG00000185736.15|ADARB2|pc|chr10:1186502:1186566:-	0	-
#Deleted in new
chr10	118674166	118674460	ENSG00000151893.14|CACUL1|pc|chr10:118674166:118674460:-	0	-
#Deleted in new
chr10	11887846	11887953	ENSG00000225778.5|PROSER2-AS1|lncRNA|chr10:11887846:11887953:-	0	-
#Deleted in new
chr10	11894181	11894700	ENSG00000225778.5|PROSER2-AS1|lncRNA|chr10:11894181:11894700:-	0	-
#Deleted in new
chr10	119003535	119003674	ENSG00000229272.1|AL157788.1|lncRNA|chr10:119003535:119003674:-	0	-
#Deleted in new
chr10	119003794	119003884	ENSG00000229272.1|AL157788.1|lncRNA|chr10:119003794:119003884:-	0	-
#Deleted in new
chr10	119134445	119135180	ENSG00000119979.16|FAM45A|pc|chr10:119134445:119135180:+	0	+
#Partially deleted in new
chr10	119169176	119170988	ENSG00000165672.6|PRDX3|pc|chr10:119169176:119170988:-	0	-
#Deleted in new
chr10	119330232	119330349	ENSG00000236426.5|AL583824.1|lncRNA|chr10:119330232:119330349:-	0	-
#Deleted in new
chr10	119335920	119335957	ENSG00000236426.5|AL583824.1|lncRNA|chr10:119335920:119335957:-	0	-
#Partially deleted in new
chr10	119335920	119336182	ENSG00000236426.5|AL583824.1|lncRNA|chr10:119335920:119336182:-	0	-
#Deleted in new
chr10	119825951	119826018	ENSG00000198825.12|INPP5F|pc|chr10:119825951:119826018:+	0	+
#Partially deleted in new
chr10	119842781	119843426	ENSG00000197771.12|MCMBP|pc|chr10:119842781:119843426:-	0	-
#Partially deleted in new
chr10	119857337	119858237	ENSG00000197771.12|MCMBP|pc|chr10:119857337:119858237:-	0	-
#Deleted in new
chr10	119890784	119890978	ENSG00000197771.12|MCMBP|pc|chr10:119890784:119890978:-	0	-
#Deleted in new
chr10	1199445	1199722	ENSG00000185736.15|ADARB2|pc|chr10:1199445:1199722:-	0	-
#Partially deleted in new
chr10	120597948	120600108	ENSG00000177234.7|LINC01561|lncRNA|chr10:120597948:120600108:+	0	+
#Partially deleted in new
chr10	120597948	120600124	ENSG00000177234.7|LINC01561|lncRNA|chr10:120597948:120600124:+	0	+
#Partially deleted in new
chr10	120761811	120763675	ENSG00000227165.7|WDR11-AS1|lncRNA|chr10:120761811:120763675:-	0	-
#Deleted in new
chr10	120763295	120763675	ENSG00000227165.7|WDR11-AS1|lncRNA|chr10:120763295:120763675:-	0	-
#Deleted in new
chr10	120763400	120763675	ENSG00000227165.7|WDR11-AS1|lncRNA|chr10:120763400:120763675:-	0	-
#Partially deleted in new
chr10	120791313	120791597	ENSG00000227165.7|WDR11-AS1|lncRNA|chr10:120791313:120791597:-	0	-
#Deleted in new
chr10	120791727	120791926	ENSG00000227165.7|WDR11-AS1|lncRNA|chr10:120791727:120791926:-	0	-
#Deleted in new
chr10	120793325	120793525	ENSG00000227165.7|WDR11-AS1|lncRNA|chr10:120793325:120793525:-	0	-
#Deleted in new
chr10	120809134	120809266	ENSG00000227165.7|WDR11-AS1|lncRNA|chr10:120809134:120809266:-	0	-
#Deleted in new
chr10	120821202	120821354	ENSG00000227165.7|WDR11-AS1|lncRNA|chr10:120821202:120821354:-	0	-
#Deleted in new
chr10	120830218	120830343	ENSG00000227165.7|WDR11-AS1|lncRNA|chr10:120830218:120830343:-	0	-
#Deleted in new
chr10	120830218	120830588	ENSG00000227165.7|WDR11-AS1|lncRNA|chr10:120830218:120830588:-	0	-
#Deleted in new
chr10	120868662	120868761	ENSG00000120008.15|WDR11|pc|chr10:120868662:120868761:+	0	+
#Partially deleted in new
chr10	120880462	120880667	ENSG00000271670.1|AC010998.2|lncRNA|chr10:120880462:120880667:-	0	-
#Deleted in new
chr10	120885009	120885125	ENSG00000120008.15|WDR11|pc|chr10:120885009:120885125:+	0	+
#Deleted in new
chr10	120925546	120926440	ENSG00000227307.1|AC010998.1|lncRNA|chr10:120925546:120926440:-	0	-
#Deleted in new
chr10	121178699	121178972	ENSG00000227143.1|LINC01153|lncRNA|chr10:121178699:121178972:+	0	+
#Partially deleted in new
chr10	121183375	121185966	ENSG00000227143.1|LINC01153|lncRNA|chr10:121183375:121185966:+	0	+
#Deleted in new
chr10	12142432	12142565	ENSG00000065665.20|SEC61A2|pc|chr10:12142432:12142565:+	0	+
#Partially deleted in new
chr10	121481834	121482177	ENSG00000066468.22|FGFR2|pc|chr10:121481834:121482177:-	0	-
#Partially deleted in new
chr10	121481855	121482177	ENSG00000066468.22|FGFR2|pc|chr10:121481855:121482177:-	0	-
#Partially deleted in new
chr10	121530321	121530458	ENSG00000066468.22|FGFR2|pc|chr10:121530321:121530458:-	0	-
#Partially deleted in new
chr10	121531266	121531314	ENSG00000066468.22|FGFR2|pc|chr10:121531266:121531314:-	0	-
#Partially deleted in new
chr10	1215675	1217119	ENSG00000185736.15|ADARB2|pc|chr10:1215675:1217119:-	0	-
#Deleted in new
chr10	121736302	121736406	ENSG00000224250.1|AC025947.1|lncRNA|chr10:121736302:121736406:+	0	+
#Deleted in new
chr10	121736790	121736902	ENSG00000224250.1|AC025947.1|lncRNA|chr10:121736790:121736902:+	0	+
#Deleted in new
chr10	121782493	121782699	ENSG00000107669.17|ATE1|pc|chr10:121782493:121782699:-	0	-
#Partially deleted in new
chr10	121961756	121962107	ENSG00000107672.14|NSMCE4A|pc|chr10:121961756:121962107:-	0	-
#Deleted in new
chr10	121961840	121962107	ENSG00000107672.14|NSMCE4A|pc|chr10:121961840:121962107:-	0	-
#Deleted in new
chr10	121989173	121989488	ENSG00000138162.18|TACC2|pc|chr10:121989173:121989488:+	0	+
#Deleted in new
chr10	121989193	121989488	ENSG00000138162.18|TACC2|pc|chr10:121989193:121989488:+	0	+
#Deleted in new
chr10	121989205	121989488	ENSG00000138162.18|TACC2|pc|chr10:121989205:121989488:+	0	+
#Deleted in new
chr10	121989262	121989488	ENSG00000138162.18|TACC2|pc|chr10:121989262:121989488:+	0	+
#Deleted in new
chr10	122209873	122209969	ENSG00000138162.18|TACC2|pc|chr10:122209873:122209969:+	0	+
#Deleted in new
chr10	12237461	12237534	ENSG00000151465.13|CDC123|pc|chr10:12237461:12237534:+	0	+
#Deleted in new
chr10	122386608	122387983	ENSG00000107679.14|PLEKHA1|pc|chr10:122386608:122387983:+	0	+
#Deleted in new
chr10	122392302	122392372	ENSG00000107679.14|PLEKHA1|pc|chr10:122392302:122392372:+	0	+
#Partially deleted in new
chr10	122411770	122413045	ENSG00000107679.14|PLEKHA1|pc|chr10:122411770:122413045:+	0	+
#Partially deleted in new
chr10	122417899	122424263	ENSG00000107679.14|PLEKHA1|pc|chr10:122417899:122424263:+	0	+
#Partially deleted in new
chr10	122429623	122442602	ENSG00000107679.14|PLEKHA1|pc|chr10:122429623:122442602:+	0	+
#Deleted in new
chr10	12244750	12245346	ENSG00000228302.2|AL512770.1|lncRNA|chr10:12244750:12245346:-	0	-
#Deleted in new
chr10	122454652	122455024	ENSG00000254636.1|ARMS2|pc|chr10:122454652:122455024:+	0	+
#Deleted in new
chr10	122456906	122457352	ENSG00000254636.1|ARMS2|pc|chr10:122456906:122457352:+	0	+
#Partially deleted in new
chr10	12245877	12246158	ENSG00000228302.2|AL512770.1|lncRNA|chr10:12245877:12246158:-	0	-
#Deleted in new
chr10	122565966	122565996	ENSG00000187908.16|DMBT1|pc|chr10:122565966:122565996:+	0	+
#Deleted in new
chr10	122570161	122570209	ENSG00000187908.16|DMBT1|pc|chr10:122570161:122570209:+	0	+
#Deleted in new
chr10	122570889	122570937	ENSG00000187908.16|DMBT1|pc|chr10:122570889:122570937:+	0	+
#Deleted in new
chr10	122572313	122572361	ENSG00000187908.16|DMBT1|pc|chr10:122572313:122572361:+	0	+
#Duplicated in new
chr10	122576398	122576722	ENSG00000187908.16|DMBT1|pc|chr10:122576398:122576722:+	0	+
#Deleted in new
chr10	122578717	122578759	ENSG00000187908.16|DMBT1|pc|chr10:122578717:122578759:+	0	+
#Deleted in new
chr10	122580865	122580895	ENSG00000187908.16|DMBT1|pc|chr10:122580865:122580895:+	0	+
#Deleted in new
chr10	122581792	122581825	ENSG00000187908.16|DMBT1|pc|chr10:122581792:122581825:+	0	+
#Duplicated in new
chr10	122582599	122582923	ENSG00000187908.16|DMBT1|pc|chr10:122582599:122582923:+	0	+
#Deleted in new
chr10	122584321	122584351	ENSG00000187908.16|DMBT1|pc|chr10:122584321:122584351:+	0	+
#Deleted in new
chr10	122585270	122585309	ENSG00000187908.16|DMBT1|pc|chr10:122585270:122585309:+	0	+
#Deleted in new
chr10	122590664	122590694	ENSG00000187908.16|DMBT1|pc|chr10:122590664:122590694:+	0	+
#Deleted in new
chr10	122591478	122591517	ENSG00000187908.16|DMBT1|pc|chr10:122591478:122591517:+	0	+
#Deleted in new
chr10	122593568	122593598	ENSG00000187908.16|DMBT1|pc|chr10:122593568:122593598:+	0	+
#Deleted in new
chr10	122594495	122594528	ENSG00000187908.16|DMBT1|pc|chr10:122594495:122594528:+	0	+
#Deleted in new
chr10	122597024	122597054	ENSG00000187908.16|DMBT1|pc|chr10:122597024:122597054:+	0	+
#Deleted in new
chr10	122597973	122598012	ENSG00000187908.16|DMBT1|pc|chr10:122597973:122598012:+	0	+
#Deleted in new
chr10	122600063	122600093	ENSG00000187908.16|DMBT1|pc|chr10:122600063:122600093:+	0	+
#Deleted in new
chr10	122600990	122601023	ENSG00000187908.16|DMBT1|pc|chr10:122600990:122601023:+	0	+
#Deleted in new
chr10	122603099	122603129	ENSG00000187908.16|DMBT1|pc|chr10:122603099:122603129:+	0	+
#Deleted in new
chr10	122605049	122605082	ENSG00000187908.16|DMBT1|pc|chr10:122605049:122605082:+	0	+
#Deleted in new
chr10	122607158	122607188	ENSG00000187908.16|DMBT1|pc|chr10:122607158:122607188:+	0	+
#Deleted in new
chr10	122609108	122609141	ENSG00000187908.16|DMBT1|pc|chr10:122609108:122609141:+	0	+
#Deleted in new
chr10	122611217	122611247	ENSG00000187908.16|DMBT1|pc|chr10:122611217:122611247:+	0	+
#Deleted in new
chr10	122613167	122613200	ENSG00000187908.16|DMBT1|pc|chr10:122613167:122613200:+	0	+
#Deleted in new
chr10	122615276	122615306	ENSG00000187908.16|DMBT1|pc|chr10:122615276:122615306:+	0	+
#Deleted in new
chr10	122617227	122617260	ENSG00000187908.16|DMBT1|pc|chr10:122617227:122617260:+	0	+
#Deleted in new
chr10	122619307	122619337	ENSG00000187908.16|DMBT1|pc|chr10:122619307:122619337:+	0	+
#Deleted in new
chr10	122620252	122620291	ENSG00000187908.16|DMBT1|pc|chr10:122620252:122620291:+	0	+
#Deleted in new
chr10	122630287	122630490	ENSG00000187908.16|DMBT1|pc|chr10:122630287:122630490:+	0	+
#Deleted in new
chr10	122631854	122631875	ENSG00000187908.16|DMBT1|pc|chr10:122631854:122631875:+	0	+
#Deleted in new
chr10	122632860	122632890	ENSG00000187908.16|DMBT1|pc|chr10:122632860:122632890:+	0	+
#Deleted in new
chr10	122855255	122855786	ENSG00000213185.6|FAM24B|pc|chr10:122855255:122855786:-	0	-
#Deleted in new
chr10	122855644	122855786	ENSG00000213185.6|FAM24B|pc|chr10:122855644:122855786:-	0	-
#Deleted in new
chr10	122933373	122933459	ENSG00000119965.12|C10orf88|pc|chr10:122933373:122933459:-	0	-
#Partially deleted in new
chr10	122987333	122987503	ENSG00000179988.13|PSTK|pc|chr10:122987333:122987503:+	0	+
#Partially deleted in new
chr10	122987333	122987504	ENSG00000179988.13|PSTK|pc|chr10:122987333:122987504:+	0	+
#Deleted in new
chr10	123027533	123027592	ENSG00000196177.12|ACADSB|pc|chr10:123027533:123027592:+	0	+
#Deleted in new
chr10	123449352	123449512	ENSG00000230131.5|AL160290.2|lncRNA|chr10:123449352:123449512:+	0	+
#Deleted in new
chr10	123488922	123489336	ENSG00000230131.5|AL160290.2|lncRNA|chr10:123488922:123489336:+	0	+
#Partially deleted in new
chr10	123574226	123574378	ENSG00000234542.1|AL357127.1|lncRNA|chr10:123574226:123574378:+	0	+
#Deleted in new
chr10	123581943	123582089	ENSG00000234542.1|AL357127.1|lncRNA|chr10:123581943:123582089:+	0	+
#Deleted in new
chr10	123713447	123713557	ENSG00000121898.12|CPXM2|pc|chr10:123713447:123713557:-	0	-
#Deleted in new
chr10	123769456	123769574	ENSG00000121898.12|CPXM2|pc|chr10:123769456:123769574:-	0	-
#Deleted in new
chr10	123931522	123931597	ENSG00000234677.1|AC068058.1|lncRNA|chr10:123931522:123931597:-	0	-
#Deleted in new
chr10	124407302	124407476	ENSG00000065154.11|OAT|pc|chr10:124407302:124407476:-	0	-
#Deleted in new
chr10	124407355	124407416	ENSG00000065154.11|OAT|pc|chr10:124407355:124407416:-	0	-
#Deleted in new
chr10	124498327	124498514	ENSG00000107902.13|LHPP|pc|chr10:124498327:124498514:+	0	+
#Deleted in new
chr10	124545983	124546189	ENSG00000107902.13|LHPP|pc|chr10:124545983:124546189:+	0	+
#Deleted in new
chr10	124546024	124546189	ENSG00000107902.13|LHPP|pc|chr10:124546024:124546189:+	0	+
#Deleted in new
chr10	124612832	124612950	ENSG00000107902.13|LHPP|pc|chr10:124612832:124612950:+	0	+
#Deleted in new
chr10	124616537	124617888	ENSG00000107902.13|LHPP|pc|chr10:124616537:124617888:+	0	+
#Partially deleted in new
chr10	124617079	124618793	ENSG00000258539.1|AC068896.1|pc|chr10:124617079:124618793:-	0	-
#Deleted in new
chr10	124667189	124667420	ENSG00000189319.13|FAM53B|pc|chr10:124667189:124667420:-	0	-
#Deleted in new
chr10	124762299	124762558	ENSG00000203791.14|EEF1AKMT2|pc|chr10:124762299:124762558:-	0	-
#Deleted in new
chr10	124946308	124946432	ENSG00000226899.1|AL731577.1|lncRNA|chr10:124946308:124946432:-	0	-
#Partially deleted in new
chr10	124996063	125001491	ENSG00000273599.1|AL731571.1|lncRNA|chr10:124996063:125001491:+	0	+
#Deleted in new
chr10	125088190	125088319	ENSG00000175029.16|CTBP2|pc|chr10:125088190:125088319:-	0	-
#Deleted in new
chr10	125138006	125138104	ENSG00000175029.16|CTBP2|pc|chr10:125138006:125138104:-	0	-
#Deleted in new
chr10	125138210	125138250	ENSG00000175029.16|CTBP2|pc|chr10:125138210:125138250:-	0	-
#Deleted in new
chr10	125574370	125574549	ENSG00000237675.5|TEX36-AS1|lncRNA|chr10:125574370:125574549:+	0	+
#Deleted in new
chr10	125574444	125574549	ENSG00000237675.5|TEX36-AS1|lncRNA|chr10:125574444:125574549:+	0	+
#Deleted in new
chr10	125575024	125575139	ENSG00000237675.5|TEX36-AS1|lncRNA|chr10:125575024:125575139:+	0	+
#Partially deleted in new
chr10	125576521	125576874	ENSG00000175018.12|TEX36|pc|chr10:125576521:125576874:-	0	-
#Deleted in new
chr10	125621612	125621645	ENSG00000175018.12|TEX36|pc|chr10:125621612:125621645:-	0	-
#Deleted in new
chr10	125686276	125686447	ENSG00000228021.7|AL158835.1|lncRNA|chr10:125686276:125686447:+	0	+
#Deleted in new
chr10	125686547	125686648	ENSG00000228021.7|AL158835.1|lncRNA|chr10:125686547:125686648:+	0	+
#Deleted in new
chr10	125697528	125697823	ENSG00000228021.7|AL158835.1|lncRNA|chr10:125697528:125697823:+	0	+
#Deleted in new
chr10	125697603	125697823	ENSG00000228021.7|AL158835.1|lncRNA|chr10:125697603:125697823:+	0	+
#Deleted in new
chr10	125697718	125697823	ENSG00000228021.7|AL158835.1|lncRNA|chr10:125697718:125697823:+	0	+
#Partially deleted in new
chr10	125709005	125709567	ENSG00000224023.10|FLJ37035|lncRNA|chr10:125709005:125709567:-	0	-
#Deleted in new
chr10	125709497	125709567	ENSG00000224023.10|FLJ37035|lncRNA|chr10:125709497:125709567:-	0	-
#Deleted in new
chr10	125709497	125709567	ENSG00000280561.1|AL158835.3|lncRNA|chr10:125709497:125709567:-	0	-
#Deleted in new
chr10	125711473	125711588	ENSG00000224023.10|FLJ37035|lncRNA|chr10:125711473:125711588:-	0	-
#Deleted in new
chr10	125718770	125718981	ENSG00000234134.1|AL158835.2|lncRNA|chr10:125718770:125718981:-	0	-
#Deleted in new
chr10	125719276	125719365	ENSG00000234134.1|AL158835.2|lncRNA|chr10:125719276:125719365:-	0	-
#Partially deleted in new
chr10	125719421	125719448	ENSG00000224023.10|FLJ37035|lncRNA|chr10:125719421:125719448:-	0	-
#Deleted in new
chr10	125731864	125731925	ENSG00000107938.17|EDRF1|pc|chr10:125731864:125731925:+	0	+
#Deleted in new
chr10	125742219	125742345	ENSG00000107938.17|EDRF1|pc|chr10:125742219:125742345:+	0	+
#Partially deleted in new
chr10	125744726	125744890	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125744726:125744890:-	0	-
#Partially deleted in new
chr10	125744728	125744851	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125744728:125744851:-	0	-
#Deleted in new
chr10	125744795	125744890	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125744795:125744890:-	0	-
#Deleted in new
chr10	125744800	125744890	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125744800:125744890:-	0	-
#Deleted in new
chr10	125744821	125744851	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125744821:125744851:-	0	-
#Deleted in new
chr10	125744821	125744890	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125744821:125744890:-	0	-
#Deleted in new
chr10	125744828	125744890	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125744828:125744890:-	0	-
#Deleted in new
chr10	125744836	125744890	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125744836:125744890:-	0	-
#Deleted in new
chr10	125744854	125744890	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125744854:125744890:-	0	-
#Partially deleted in new
chr10	125747862	125749096	ENSG00000107938.17|EDRF1|pc|chr10:125747862:125749096:+	0	+
#Deleted in new
chr10	125748814	125749240	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125748814:125749240:-	0	-
#Deleted in new
chr10	125750439	125750466	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125750439:125750466:-	0	-
#Deleted in new
chr10	125750439	125750481	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125750439:125750481:-	0	-
#Deleted in new
chr10	125750439	125750482	ENSG00000236991.6|EDRF1-AS1|lncRNA|chr10:125750439:125750482:-	0	-
#Deleted in new
chr10	125784979	125785260	ENSG00000188690.12|UROS|pc|chr10:125784979:125785260:-	0	-
#Deleted in new
chr10	125785516	125785839	ENSG00000188690.12|UROS|pc|chr10:125785516:125785839:-	0	-
#Partially deleted in new
chr10	125802056	125803024	ENSG00000188690.12|UROS|pc|chr10:125802056:125803024:-	0	-
#Partially deleted in new
chr10	125807149	125807487	ENSG00000188690.12|UROS|pc|chr10:125807149:125807487:-	0	-
#Deleted in new
chr10	125823028	125823089	ENSG00000188690.12|UROS|pc|chr10:125823028:125823089:-	0	-
#Partially deleted in new
chr10	125823028	125823196	ENSG00000188690.12|UROS|pc|chr10:125823028:125823196:-	0	-
#Partially deleted in new
chr10	125823028	125823227	ENSG00000188690.12|UROS|pc|chr10:125823028:125823227:-	0	-
#Split in new
chr10	125825493	125826665	ENSG00000107949.16|BCCIP|pc|chr10:125825493:125826665:+	0	+
#Deleted in new
chr10	125972187	125972341	ENSG00000233409.1|FANK1-AS1|lncRNA|chr10:125972187:125972341:-	0	-
#Deleted in new
chr10	125972736	125972845	ENSG00000233409.1|FANK1-AS1|lncRNA|chr10:125972736:125972845:-	0	-
#Deleted in new
chr10	125974894	125974953	ENSG00000203780.10|FANK1|pc|chr10:125974894:125974953:+	0	+
#Deleted in new
chr10	125989429	125989447	ENSG00000203780.10|FANK1|pc|chr10:125989429:125989447:+	0	+
#Deleted in new
chr10	126041345	126042235	ENSG00000148848.14|ADAM12|pc|chr10:126041345:126042235:-	0	-
#Deleted in new
chr10	126522722	126522950	ENSG00000154493.17|C10orf90|pc|chr10:126522722:126522950:-	0	-
#Deleted in new
chr10	127001554	127001609	ENSG00000223528.7|AL359094.1|lncRNA|chr10:127001554:127001609:-	0	-
#Deleted in new
chr10	127007410	127007573	ENSG00000223528.7|AL359094.1|lncRNA|chr10:127007410:127007573:-	0	-
#Deleted in new
chr10	127015922	127016097	ENSG00000223528.7|AL359094.1|lncRNA|chr10:127015922:127016097:-	0	-
#Deleted in new
chr10	127015922	127016097	ENSG00000232935.2|AL359094.2|lncRNA|chr10:127015922:127016097:-	0	-
#Deleted in new
chr10	127016042	127016097	ENSG00000223528.7|AL359094.1|lncRNA|chr10:127016042:127016097:-	0	-
#Deleted in new
chr10	127016497	127016581	ENSG00000223528.7|AL359094.1|lncRNA|chr10:127016497:127016581:-	0	-
#Deleted in new
chr10	127025953	127026052	ENSG00000223528.7|AL359094.1|lncRNA|chr10:127025953:127026052:-	0	-
#Partially deleted in new
chr10	128096658	128099255	ENSG00000148773.13|MKI67|pc|chr10:128096658:128099255:-	0	-
#Partially deleted in new
chr10	128126098	128126204	ENSG00000148773.13|MKI67|pc|chr10:128126098:128126204:-	0	-
#Deleted in new
chr10	128181031	128181156	ENSG00000280953.2|LINC01163|lncRNA|chr10:128181031:128181156:+	0	+
#Deleted in new
chr10	128181135	128181212	ENSG00000280953.2|LINC01163|lncRNA|chr10:128181135:128181212:+	0	+
#Deleted in new
chr10	128285951	128286025	ENSG00000280953.2|LINC01163|lncRNA|chr10:128285951:128286025:+	0	+
#Deleted in new
chr10	128306040	128306183	ENSG00000280953.2|LINC01163|lncRNA|chr10:128306040:128306183:+	0	+
#Deleted in new
chr10	128319961	128320214	ENSG00000234640.1|AL390763.1|lncRNA|chr10:128319961:128320214:-	0	-
#Deleted in new
chr10	129278250	129278333	ENSG00000225424.1|AL391869.1|lncRNA|chr10:129278250:129278333:+	0	+
#Deleted in new
chr10	129291330	129291722	ENSG00000225424.1|AL391869.1|lncRNA|chr10:129291330:129291722:+	0	+
#Deleted in new
chr10	129563778	129564162	ENSG00000170430.9|MGMT|pc|chr10:129563778:129564162:+	0	+
#Partially deleted in new
chr10	129693721	129693899	ENSG00000237224.4|AL157832.2|lncRNA|chr10:129693721:129693899:-	0	-
#Partially deleted in new
chr10	129693788	129693899	ENSG00000237224.4|AL157832.2|lncRNA|chr10:129693788:129693899:-	0	-
#Deleted in new
chr10	129802789	129802891	ENSG00000283141.1|AL157832.3|lncRNA|chr10:129802789:129802891:+	0	+
#Deleted in new
chr10	129805340	129805432	ENSG00000283141.1|AL157832.3|lncRNA|chr10:129805340:129805432:+	0	+
#Deleted in new
chr10	129806916	129806971	ENSG00000283141.1|AL157832.3|lncRNA|chr10:129806916:129806971:+	0	+
#Partially deleted in new
chr10	130066373	130068608	ENSG00000237489.3|LINC00959|pc|chr10:130066373:130068608:-	0	-
#Deleted in new
chr10	130101093	130101211	ENSG00000237489.3|LINC00959|pc|chr10:130101093:130101211:-	0	-
#Deleted in new
chr10	130104082	130104230	ENSG00000237489.3|LINC00959|pc|chr10:130104082:130104230:-	0	-
#Partially deleted in new
chr10	130104568	130104998	ENSG00000277218.1|AL139123.1|lncRNA|chr10:130104568:130104998:-	0	-
#Deleted in new
chr10	130180112	130180321	ENSG00000108010.11|GLRX3|pc|chr10:130180112:130180321:+	0	+
#Deleted in new
chr10	130180112	130180382	ENSG00000108010.11|GLRX3|pc|chr10:130180112:130180382:+	0	+
#Deleted in new
chr10	130180112	130182881	ENSG00000108010.11|GLRX3|pc|chr10:130180112:130182881:+	0	+
#Deleted in new
chr10	130180184	130180321	ENSG00000108010.11|GLRX3|pc|chr10:130180184:130180321:+	0	+
#Partially deleted in new
chr10	130183284	130183643	ENSG00000108010.11|GLRX3|pc|chr10:130183284:130183643:+	0	+
#Deleted in new
chr10	130183867	130184521	ENSG00000108010.11|GLRX3|pc|chr10:130183867:130184521:+	0	+
#Deleted in new
chr10	13073867	13074100	ENSG00000151468.10|CCDC3|pc|chr10:13073867:13074100:-	0	-
#Deleted in new
chr10	13098524	13098602	ENSG00000151468.10|CCDC3|pc|chr10:13098524:13098602:-	0	-
#Deleted in new
chr10	13099083	13099309	ENSG00000151468.10|CCDC3|pc|chr10:13099083:13099309:-	0	-
#Partially deleted in new
chr10	13099448	13099958	ENSG00000123240.16|OPTN|pc|chr10:13099448:13099958:+	0	+
#Deleted in new
chr10	13099505	13099652	ENSG00000151468.10|CCDC3|pc|chr10:13099505:13099652:-	0	-
#Partially deleted in new
chr10	13099602	13099958	ENSG00000123240.16|OPTN|pc|chr10:13099602:13099958:+	0	+
#Deleted in new
chr10	13108137	13108289	ENSG00000123240.16|OPTN|pc|chr10:13108137:13108289:+	0	+
#Deleted in new
chr10	13109472	13109662	ENSG00000123240.16|OPTN|pc|chr10:13109472:13109662:+	0	+
#Deleted in new
chr10	131095217	131095299	ENSG00000230098.1|TCERG1L-AS1|lncRNA|chr10:131095217:131095299:+	0	+
#Deleted in new
chr10	131164001	131164119	ENSG00000176769.9|TCERG1L|pc|chr10:131164001:131164119:-	0	-
#Partially deleted in new
chr10	13136744	13138291	ENSG00000123240.16|OPTN|pc|chr10:13136744:13138291:+	0	+
#Partially deleted in new
chr10	13136744	13138308	ENSG00000123240.16|OPTN|pc|chr10:13136744:13138308:+	0	+
#Deleted in new
chr10	131772397	131773687	ENSG00000189275.3|LINC01164|lncRNA|chr10:131772397:131773687:-	0	-
#Partially deleted in new
chr10	131774883	131776295	ENSG00000189275.3|LINC01164|lncRNA|chr10:131774883:131776295:-	0	-
#Deleted in new
chr10	131790076	131790199	ENSG00000189275.3|LINC01164|lncRNA|chr10:131790076:131790199:-	0	-
#Deleted in new
chr10	131831909	131833508	ENSG00000280446.1|AL607033.1|lncRNA|chr10:131831909:131833508:-	0	-
#Deleted in new
chr10	131891639	131892989	ENSG00000283095.1|FP565171.1|lncRNA|chr10:131891639:131892989:+	0	+
#Deleted in new
chr10	131934893	131935006	ENSG00000175470.18|PPP2R2D|pc|chr10:131934893:131935006:+	0	+
#Partially deleted in new
chr10	131945294	131945925	ENSG00000175470.18|PPP2R2D|pc|chr10:131945294:131945925:+	0	+
#Duplicated in new
chr10	131955683	131959827	ENSG00000175470.18|PPP2R2D|pc|chr10:131955683:131959827:+	0	+
#Deleted in new
chr10	131971201	131971533	ENSG00000277959.1|AL162274.2|lncRNA|chr10:131971201:131971533:+	0	+
#Partially deleted in new
chr10	131980239	131981337	ENSG00000273521.1|AL162274.1|lncRNA|chr10:131980239:131981337:+	0	+
#Deleted in new
chr10	131981760	131981923	ENSG00000176171.11|BNIP3|pc|chr10:131981760:131981923:-	0	-
#Deleted in new
chr10	131981760	131981965	ENSG00000176171.11|BNIP3|pc|chr10:131981760:131981965:-	0	-
#Deleted in new
chr10	131981760	131981967	ENSG00000176171.11|BNIP3|pc|chr10:131981760:131981967:-	0	-
#Deleted in new
chr10	131981760	131982013	ENSG00000176171.11|BNIP3|pc|chr10:131981760:131982013:-	0	-
#Deleted in new
chr10	131996737	131999846	ENSG00000279982.1|AL162274.3|lncRNA|chr10:131996737:131999846:+	0	+
#Partially deleted in new
chr10	132143715	132144697	ENSG00000188385.11|JAKMIP3|pc|chr10:132143715:132144697:+	0	+
#Deleted in new
chr10	132169855	132170252	ENSG00000188385.11|JAKMIP3|pc|chr10:132169855:132170252:+	0	+
#Deleted in new
chr10	132209294	132209364	ENSG00000165752.16|STK32C|pc|chr10:132209294:132209364:-	0	-
#Deleted in new
chr10	132249029	132249108	ENSG00000165752.16|STK32C|pc|chr10:132249029:132249108:-	0	-
#Deleted in new
chr10	132324036	132324373	ENSG00000165752.16|STK32C|pc|chr10:132324036:132324373:-	0	-
#Deleted in new
chr10	132330280	132330485	ENSG00000165752.16|STK32C|pc|chr10:132330280:132330485:-	0	-
#Deleted in new
chr10	132331435	132331831	ENSG00000165752.16|STK32C|pc|chr10:132331435:132331831:-	0	-
#Deleted in new
chr10	132331435	132331837	ENSG00000165752.16|STK32C|pc|chr10:132331435:132331837:-	0	-
#Deleted in new
chr10	132331435	132331847	ENSG00000165752.16|STK32C|pc|chr10:132331435:132331847:-	0	-
#Deleted in new
chr10	132332278	132332536	ENSG00000148814.17|LRRC27|pc|chr10:132332278:132332536:+	0	+
#Deleted in new
chr10	132335107	132335241	ENSG00000148814.17|LRRC27|pc|chr10:132335107:132335241:+	0	+
#Deleted in new
chr10	132337137	132337421	ENSG00000148814.17|LRRC27|pc|chr10:132337137:132337421:+	0	+
#Deleted in new
chr10	132348962	132349057	ENSG00000148814.17|LRRC27|pc|chr10:132348962:132349057:+	0	+
#Partially deleted in new
chr10	132350399	132351753	ENSG00000148814.17|LRRC27|pc|chr10:132350399:132351753:+	0	+
#Partially deleted in new
chr10	132366298	132366677	ENSG00000148814.17|LRRC27|pc|chr10:132366298:132366677:+	0	+
#Deleted in new
chr10	132366434	132366843	ENSG00000148814.17|LRRC27|pc|chr10:132366434:132366843:+	0	+
#Deleted in new
chr10	132366614	132366677	ENSG00000148814.17|LRRC27|pc|chr10:132366614:132366677:+	0	+
#Deleted in new
chr10	132366845	132367001	ENSG00000148814.17|LRRC27|pc|chr10:132366845:132367001:+	0	+
#Partially deleted in new
chr10	132375065	132379918	ENSG00000148814.17|LRRC27|pc|chr10:132375065:132379918:+	0	+
#Deleted in new
chr10	132419082	132419183	ENSG00000231705.1|AL451069.2|lncRNA|chr10:132419082:132419183:+	0	+
#Deleted in new
chr10	132433732	132434691	ENSG00000234311.1|AL451069.3|lncRNA|chr10:132433732:132434691:-	0	-
#Deleted in new
chr10	132441430	132441484	ENSG00000234311.1|AL451069.3|lncRNA|chr10:132441430:132441484:-	0	-
#Deleted in new
chr10	132445188	132445278	ENSG00000180066.9|C10orf91|lncRNA|chr10:132445188:132445278:+	0	+
#Deleted in new
chr10	132445695	132445779	ENSG00000180066.9|C10orf91|lncRNA|chr10:132445695:132445779:+	0	+
#Duplicated in new
chr10	132447736	132449408	ENSG00000180066.9|C10orf91|lncRNA|chr10:132447736:132449408:+	0	+
#Deleted in new
chr10	132511625	132512161	ENSG00000226900.1|AL451069.1|lncRNA|chr10:132511625:132512161:-	0	-
#Deleted in new
chr10	132832615	132832802	ENSG00000171811.13|CFAP46|pc|chr10:132832615:132832802:-	0	-
#Deleted in new
chr10	132877880	132878087	ENSG00000171811.13|CFAP46|pc|chr10:132877880:132878087:-	0	-
#Partially deleted in new
chr10	13291460	13291912	ENSG00000107537.13|PHYH|pc|chr10:13291460:13291912:-	0	-
#Partially deleted in new
chr10	132943966	132946481	ENSG00000232903.2|LINC01166|lncRNA|chr10:132943966:132946481:-	0	-
#Deleted in new
chr10	132961758	132962237	ENSG00000224758.1|LINC01167|lncRNA|chr10:132961758:132962237:-	0	-
#Deleted in new
chr10	132965185	132965289	ENSG00000232903.2|LINC01166|lncRNA|chr10:132965185:132965289:-	0	-
#Deleted in new
chr10	132965533	132965907	ENSG00000240707.2|LINC01168|lncRNA|chr10:132965533:132965907:+	0	+
#Deleted in new
chr10	132975231	132976354	ENSG00000240707.2|LINC01168|lncRNA|chr10:132975231:132976354:+	0	+
#Deleted in new
chr10	13299419	13299549	ENSG00000107537.13|PHYH|pc|chr10:13299419:13299549:-	0	-
#Deleted in new
chr10	13299419	13299763	ENSG00000107537.13|PHYH|pc|chr10:13299419:13299763:-	0	-
#Deleted in new
chr10	133070928	133071150	ENSG00000197177.15|ADGRA1|pc|chr10:133070928:133071150:+	0	+
#Deleted in new
chr10	133071959	133072101	ENSG00000197177.15|ADGRA1|pc|chr10:133071959:133072101:+	0	+
#Deleted in new
chr10	133072826	133073197	ENSG00000197177.15|ADGRA1|pc|chr10:133072826:133073197:+	0	+
#Deleted in new
chr10	133084808	133085033	ENSG00000197177.15|ADGRA1|pc|chr10:133084808:133085033:+	0	+
#Deleted in new
chr10	133085530	133085646	ENSG00000256925.2|ADGRA1-AS1|lncRNA|chr10:133085530:133085646:-	0	-
#Deleted in new
chr10	133092998	133093258	ENSG00000197177.15|ADGRA1|pc|chr10:133092998:133093258:+	0	+
#Deleted in new
chr10	133095650	133095780	ENSG00000197177.15|ADGRA1|pc|chr10:133095650:133095780:+	0	+
#Partially deleted in new
chr10	133102245	133102338	ENSG00000197177.15|ADGRA1|pc|chr10:133102245:133102338:+	0	+
#Deleted in new
chr10	133173930	133174244	ENSG00000171798.17|KNDC1|pc|chr10:133173930:133174244:+	0	+
#Deleted in new
chr10	133178834	133179149	ENSG00000171798.17|KNDC1|pc|chr10:133178834:133179149:+	0	+
#Deleted in new
chr10	133179261	133179374	ENSG00000171798.17|KNDC1|pc|chr10:133179261:133179374:+	0	+
#Deleted in new
chr10	133237403	133238155	ENSG00000151650.7|VENTX|pc|chr10:133237403:133238155:+	0	+
#Deleted in new
chr10	133246477	133247050	ENSG00000166917.10|MIR202HG|lncRNA|chr10:133246477:133247050:-	0	-
#Deleted in new
chr10	133246909	133247050	ENSG00000166917.10|MIR202HG|lncRNA|chr10:133246909:133247050:-	0	-
#Deleted in new
chr10	133257143	133257551	ENSG00000273980.1|AL592071.1|lncRNA|chr10:133257143:133257551:-	0	-
#Partially deleted in new
chr10	133278629	133279901	ENSG00000130640.13|TUBGCP2|pc|chr10:133278629:133279901:-	0	-
#Partially deleted in new
chr10	133289823	133291034	ENSG00000130640.13|TUBGCP2|pc|chr10:133289823:133291034:-	0	-
#Deleted in new
chr10	133295186	133295282	ENSG00000235245.1|AL360181.2|lncRNA|chr10:133295186:133295282:-	0	-
#Deleted in new
chr10	133295363	133295439	ENSG00000235245.1|AL360181.2|lncRNA|chr10:133295363:133295439:-	0	-
#Deleted in new
chr10	133295523	133295977	ENSG00000235245.1|AL360181.2|lncRNA|chr10:133295523:133295977:-	0	-
#Deleted in new
chr10	133297320	133297404	ENSG00000130640.13|TUBGCP2|pc|chr10:133297320:133297404:-	0	-
#Split in new
chr10	133301700	133302980	ENSG00000130640.13|TUBGCP2|pc|chr10:133301700:133302980:-	0	-
#Deleted in new
chr10	133345753	133345797	ENSG00000226699.1|AL360181.1|lncRNA|chr10:133345753:133345797:-	0	-
#Deleted in new
chr10	133347145	133347425	ENSG00000165828.14|PRAP1|pc|chr10:133347145:133347425:+	0	+
#Deleted in new
chr10	133347367	133347425	ENSG00000165828.14|PRAP1|pc|chr10:133347367:133347425:+	0	+
#Deleted in new
chr10	133374735	133374869	ENSG00000274685.1|AL360181.4|lncRNA|chr10:133374735:133374869:-	0	-
#Deleted in new
chr10	133382851	133382939	ENSG00000148832.15|PAOX|pc|chr10:133382851:133382939:+	0	+
#Partially deleted in new
chr10	133390833	133391098	ENSG00000254536.1|AL360181.3|pc|chr10:133390833:133391098:+	0	+
#Deleted in new
chr10	133391057	133391154	ENSG00000148832.15|PAOX|pc|chr10:133391057:133391154:+	0	+
#Partially deleted in new
chr10	133394272	133394792	ENSG00000148824.18|MTG1|pc|chr10:133394272:133394792:+	0	+
#Deleted in new
chr10	13340690	13340790	ENSG00000086475.14|SEPHS1|pc|chr10:13340690:13340790:-	0	-
#Deleted in new
chr10	133465874	133465924	ENSG00000214279.13|SCART1|pc|chr10:133465874:133465924:+	0	+
#Deleted in new
chr10	133466234	133466381	ENSG00000214279.13|SCART1|pc|chr10:133466234:133466381:+	0	+
#Deleted in new
chr10	133466973	133467353	ENSG00000214279.13|SCART1|pc|chr10:133466973:133467353:+	0	+
#Deleted in new
chr10	133467197	133467353	ENSG00000214279.13|SCART1|pc|chr10:133467197:133467353:+	0	+
#Deleted in new
chr10	133467846	133468412	ENSG00000214279.13|SCART1|pc|chr10:133467846:133468412:+	0	+
#Deleted in new
chr10	133467846	133468449	ENSG00000214279.13|SCART1|pc|chr10:133467846:133468449:+	0	+
#Deleted in new
chr10	133467846	133468991	ENSG00000214279.13|SCART1|pc|chr10:133467846:133468991:+	0	+
#Deleted in new
chr10	133467846	133469183	ENSG00000214279.13|SCART1|pc|chr10:133467846:133469183:+	0	+
#Deleted in new
chr10	133491221	133491319	ENSG00000214279.13|SCART1|pc|chr10:133491221:133491319:+	0	+
#Deleted in new
chr10	133493286	133493490	ENSG00000214279.13|SCART1|pc|chr10:133493286:133493490:+	0	+
#Deleted in new
chr10	133497828	133498005	ENSG00000214279.13|SCART1|pc|chr10:133497828:133498005:+	0	+
#Deleted in new
chr10	133523270	133523558	ENSG00000214279.13|SCART1|pc|chr10:133523270:133523558:+	0	+
#Deleted in new
chr10	133553900	133554328	ENSG00000171772.16|SYCE1|pc|chr10:133553900:133554328:-	0	-
#Deleted in new
chr10	133554289	133554328	ENSG00000171772.16|SYCE1|pc|chr10:133554289:133554328:-	0	-
#Deleted in new
chr10	133626564	133626792	ENSG00000225899.7|FRG2B|pc|chr10:133626564:133626792:-	0	-
#Deleted in new
chr10	133626564	133626795	ENSG00000225899.7|FRG2B|pc|chr10:133626564:133626795:-	0	-
#Partially deleted in new
chr10	13438483	13439497	ENSG00000165626.16|BEND7|pc|chr10:13438483:13439497:-	0	-
#Deleted in new
chr10	13438636	13439497	ENSG00000165626.16|BEND7|pc|chr10:13438636:13439497:-	0	-
#Partially deleted in new
chr10	13459504	13460083	ENSG00000165626.16|BEND7|pc|chr10:13459504:13460083:-	0	-
#Deleted in new
chr10	13636996	13637094	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13636996:13637094:+	0	+
#Deleted in new
chr10	13637015	13637187	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13637015:13637187:+	0	+
#Partially deleted in new
chr10	13637854	13638120	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13637854:13638120:+	0	+
#Deleted in new
chr10	13637996	13638120	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13637996:13638120:+	0	+
#Deleted in new
chr10	13637996	13638120	ENSG00000282246.1|AL157392.5|pc|chr10:13637996:13638120:+	0	+
#Deleted in new
chr10	13638015	13638120	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13638015:13638120:+	0	+
#Deleted in new
chr10	13638700	13638923	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13638700:13638923:+	0	+
#Deleted in new
chr10	13638700	13638923	ENSG00000282246.1|AL157392.5|pc|chr10:13638700:13638923:+	0	+
#Deleted in new
chr10	13638802	13638923	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13638802:13638923:+	0	+
#Deleted in new
chr10	13638824	13638923	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13638824:13638923:+	0	+
#Deleted in new
chr10	13648619	13648768	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13648619:13648768:+	0	+
#Deleted in new
chr10	13648625	13648768	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13648625:13648768:+	0	+
#Deleted in new
chr10	13648625	13648773	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13648625:13648773:+	0	+
#Deleted in new
chr10	13648763	13648768	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13648763:13648768:+	0	+
#Deleted in new
chr10	13649227	13649334	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649227:13649334:+	0	+
#Deleted in new
chr10	13649246	13649637	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649246:13649637:+	0	+
#Deleted in new
chr10	13649247	13649334	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649247:13649334:+	0	+
#Deleted in new
chr10	13649248	13649334	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649248:13649334:+	0	+
#Deleted in new
chr10	13649263	13649334	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649263:13649334:+	0	+
#Deleted in new
chr10	13649277	13649334	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649277:13649334:+	0	+
#Deleted in new
chr10	13649283	13649334	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649283:13649334:+	0	+
#Deleted in new
chr10	13649289	13649334	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649289:13649334:+	0	+
#Deleted in new
chr10	13649292	13649637	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649292:13649637:+	0	+
#Deleted in new
chr10	13649295	13649637	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649295:13649637:+	0	+
#Deleted in new
chr10	13649299	13649334	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649299:13649334:+	0	+
#Deleted in new
chr10	13649457	13649637	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13649457:13649637:+	0	+
#Deleted in new
chr10	13651065	13651426	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13651065:13651426:+	0	+
#Deleted in new
chr10	13651368	13651426	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13651368:13651426:+	0	+
#Deleted in new
chr10	13651369	13651426	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13651369:13651426:+	0	+
#Partially deleted in new
chr10	13653218	13653446	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13653218:13653446:+	0	+
#Partially deleted in new
chr10	13667393	13667577	ENSG00000239665.8|AL157392.3|lncRNA|chr10:13667393:13667577:+	0	+
#Deleted in new
chr10	13693481	13693517	ENSG00000151474.21|FRMD4A|pc|chr10:13693481:13693517:-	0	-
#Deleted in new
chr10	14060	14299	ENSG00000260370.1|AC215217.1|lncRNA|chr10:14060:14299:-	0	-
#Deleted in new
chr10	14097009	14097138	ENSG00000151474.21|FRMD4A|pc|chr10:14097009:14097138:-	0	-
#Deleted in new
chr10	14137	14299	ENSG00000260370.1|AC215217.1|lncRNA|chr10:14137:14299:-	0	-
#Deleted in new
chr10	14462067	14462094	ENSG00000151474.21|FRMD4A|pc|chr10:14462067:14462094:-	0	-
#Deleted in new
chr10	14462067	14462142	ENSG00000151474.21|FRMD4A|pc|chr10:14462067:14462142:-	0	-
#Deleted in new
chr10	14496	14604	ENSG00000260370.1|AC215217.1|lncRNA|chr10:14496:14604:-	0	-
#Deleted in new
chr10	14527936	14528039	ENSG00000065809.13|FAM107B|pc|chr10:14527936:14528039:-	0	-
#Deleted in new
chr10	14553321	14553387	ENSG00000065809.13|FAM107B|pc|chr10:14553321:14553387:-	0	-
#Deleted in new
chr10	14553321	14553454	ENSG00000065809.13|FAM107B|pc|chr10:14553321:14553454:-	0	-
#Deleted in new
chr10	14571762	14572155	ENSG00000065809.13|FAM107B|pc|chr10:14571762:14572155:-	0	-
#Deleted in new
chr10	14571762	14572189	ENSG00000065809.13|FAM107B|pc|chr10:14571762:14572189:-	0	-
#Deleted in new
chr10	14571923	14571999	ENSG00000065809.13|FAM107B|pc|chr10:14571923:14571999:-	0	-
#Deleted in new
chr10	14571923	14572030	ENSG00000065809.13|FAM107B|pc|chr10:14571923:14572030:-	0	-
#Deleted in new
chr10	14571923	14572096	ENSG00000065809.13|FAM107B|pc|chr10:14571923:14572096:-	0	-
#Deleted in new
chr10	14571923	14572128	ENSG00000065809.13|FAM107B|pc|chr10:14571923:14572128:-	0	-
#Deleted in new
chr10	14571990	14572032	ENSG00000065809.13|FAM107B|pc|chr10:14571990:14572032:-	0	-
#Deleted in new
chr10	14571990	14572113	ENSG00000065809.13|FAM107B|pc|chr10:14571990:14572113:-	0	-
#Deleted in new
chr10	14572228	14572314	ENSG00000065809.13|FAM107B|pc|chr10:14572228:14572314:-	0	-
#Deleted in new
chr10	14572228	14572339	ENSG00000065809.13|FAM107B|pc|chr10:14572228:14572339:-	0	-
#Deleted in new
chr10	14834216	14834333	ENSG00000185267.9|CDNF|pc|chr10:14834216:14834333:-	0	-
#Deleted in new
chr10	14836250	14836290	ENSG00000185267.9|CDNF|pc|chr10:14836250:14836290:-	0	-
#Deleted in new
chr10	14836250	14836294	ENSG00000185267.9|CDNF|pc|chr10:14836250:14836294:-	0	-
#Deleted in new
chr10	14911189	14911322	ENSG00000152457.17|DCLRE1C|pc|chr10:14911189:14911322:-	0	-
#Deleted in new
chr10	14942113	14942240	ENSG00000152457.17|DCLRE1C|pc|chr10:14942113:14942240:-	0	-
#Deleted in new
chr10	14942113	14942435	ENSG00000152457.17|DCLRE1C|pc|chr10:14942113:14942435:-	0	-
#Partially deleted in new
chr10	14945434	14945565	ENSG00000152457.17|DCLRE1C|pc|chr10:14945434:14945565:-	0	-
#Deleted in new
chr10	14947524	14947609	ENSG00000152457.17|DCLRE1C|pc|chr10:14947524:14947609:-	0	-
#Deleted in new
chr10	14970247	14970546	ENSG00000197889.9|MEIG1|pc|chr10:14970247:14970546:+	0	+
#Partially deleted in new
chr10	14987787	14988050	ENSG00000197889.9|MEIG1|pc|chr10:14987787:14988050:+	0	+
#Deleted in new
chr10	15032226	15032350	ENSG00000152463.14|OLAH|pc|chr10:15032226:15032350:+	0	+
#Deleted in new
chr10	15032252	15032350	ENSG00000152463.14|OLAH|pc|chr10:15032252:15032350:+	0	+
#Deleted in new
chr10	15038621	15038683	ENSG00000152463.14|OLAH|pc|chr10:15038621:15038683:+	0	+
#Deleted in new
chr10	15043895	15043986	ENSG00000152463.14|OLAH|pc|chr10:15043895:15043986:+	0	+
#Deleted in new
chr10	15043926	15043986	ENSG00000152463.14|OLAH|pc|chr10:15043926:15043986:+	0	+
#Deleted in new
chr10	15043962	15043986	ENSG00000152463.14|OLAH|pc|chr10:15043962:15043986:+	0	+
#Deleted in new
chr10	15056823	15056950	ENSG00000152463.14|OLAH|pc|chr10:15056823:15056950:+	0	+
#Deleted in new
chr10	15056823	15056982	ENSG00000152463.14|OLAH|pc|chr10:15056823:15056982:+	0	+
#Deleted in new
chr10	15068057	15068070	ENSG00000152463.14|OLAH|pc|chr10:15068057:15068070:+	0	+
#Partially deleted in new
chr10	15077522	15078603	ENSG00000176244.6|ACBD7|pc|chr10:15077522:15078603:-	0	-
#Partially deleted in new
chr10	15097419	15097766	ENSG00000152464.14|RPP38|pc|chr10:15097419:15097766:+	0	+
#Deleted in new
chr10	15102217	15102336	ENSG00000152464.14|RPP38|pc|chr10:15102217:15102336:+	0	+
#Deleted in new
chr10	15104436	15104455	ENSG00000152464.14|RPP38|pc|chr10:15104436:15104455:+	0	+
#Deleted in new
chr10	15106039	15106130	ENSG00000152464.14|RPP38|pc|chr10:15106039:15106130:+	0	+
#Deleted in new
chr10	15106372	15106698	ENSG00000152465.17|NMT2|pc|chr10:15106372:15106698:-	0	-
#Deleted in new
chr10	15111685	15111786	ENSG00000152464.14|RPP38|pc|chr10:15111685:15111786:+	0	+
#Partially deleted in new
chr10	15241146	15241767	ENSG00000232739.1|AL607028.1|lncRNA|chr10:15241146:15241767:+	0	+
#Partially deleted in new
chr10	1526636	1526899	ENSG00000205696.4|ADARB2-AS1|lncRNA|chr10:1526636:1526899:+	0	+
#Deleted in new
chr10	1534589	1534995	ENSG00000205696.4|ADARB2-AS1|lncRNA|chr10:1534589:1534995:+	0	+
#Deleted in new
chr10	1556610	1556984	ENSG00000205696.4|ADARB2-AS1|lncRNA|chr10:1556610:1556984:+	0	+
#Deleted in new
chr10	15611509	15611537	ENSG00000077943.7|ITGA8|pc|chr10:15611509:15611537:-	0	-
#Deleted in new
chr10	15660878	15660922	ENSG00000077943.7|ITGA8|pc|chr10:15660878:15660922:-	0	-
#Deleted in new
chr10	16283729	16283908	ENSG00000226140.5|AL355339.1|lncRNA|chr10:16283729:16283908:+	0	+
#Deleted in new
chr10	16288841	16288901	ENSG00000226140.5|AL355339.1|lncRNA|chr10:16288841:16288901:+	0	+
#Deleted in new
chr10	16288841	16289048	ENSG00000226140.5|AL355339.1|lncRNA|chr10:16288841:16289048:+	0	+
#Deleted in new
chr10	16295688	16295858	ENSG00000226140.5|AL355339.1|lncRNA|chr10:16295688:16295858:+	0	+
#Deleted in new
chr10	16437356	16437490	ENSG00000165983.14|PTER|pc|chr10:16437356:16437490:+	0	+
#Deleted in new
chr10	16501	16544	ENSG00000260370.1|AC215217.1|lncRNA|chr10:16501:16544:-	0	-
#Deleted in new
chr10	16721351	16721719	ENSG00000225213.2|AC073367.1|lncRNA|chr10:16721351:16721719:-	0	-
#Deleted in new
chr10	16748169	16748377	ENSG00000225213.2|AC073367.1|lncRNA|chr10:16748169:16748377:-	0	-
#Partially deleted in new
chr10	16823963	16825082	ENSG00000107611.14|CUBN|pc|chr10:16823963:16825082:-	0	-
#Partially deleted in new
chr10	17146736	17149140	ENSG00000107614.21|TRDMT1|pc|chr10:17146736:17149140:-	0	-
#Deleted in new
chr10	17171555	17172024	ENSG00000107614.21|TRDMT1|pc|chr10:17171555:17172024:-	0	-
#Deleted in new
chr10	17171819	17172024	ENSG00000107614.21|TRDMT1|pc|chr10:17171819:17172024:-	0	-
#Deleted in new
chr10	17171907	17172024	ENSG00000107614.21|TRDMT1|pc|chr10:17171907:17172024:-	0	-
#Deleted in new
chr10	17200519	17200567	ENSG00000107614.21|TRDMT1|pc|chr10:17200519:17200567:-	0	-
#Partially deleted in new
chr10	17409320	17410631	ENSG00000204832.9|ST8SIA6-AS1|lncRNA|chr10:17409320:17410631:+	0	+
#Deleted in new
chr10	17615476	17615964	ENSG00000165996.13|HACD1|pc|chr10:17615476:17615964:-	0	-
#Deleted in new
chr10	17672974	17673078	ENSG00000136738.14|STAM|pc|chr10:17672974:17673078:+	0	+
#Partially deleted in new
chr10	17696602	17696703	ENSG00000229190.1|AC069542.1|lncRNA|chr10:17696602:17696703:-	0	-
#Partially deleted in new
chr10	17862886	17863048	ENSG00000235637.1|AC069023.1|lncRNA|chr10:17862886:17863048:-	0	-
#Deleted in new
chr10	18007128	18007270	ENSG00000226083.5|SLC39A12-AS1|lncRNA|chr10:18007128:18007270:-	0	-
#Deleted in new
chr10	18008549	18008683	ENSG00000226083.5|SLC39A12-AS1|lncRNA|chr10:18008549:18008683:-	0	-
#Deleted in new
chr10	18010528	18010562	ENSG00000226083.5|SLC39A12-AS1|lncRNA|chr10:18010528:18010562:-	0	-
#Deleted in new
chr10	18181806	18182107	ENSG00000165995.18|CACNB2|pc|chr10:18181806:18182107:+	0	+
#Partially deleted in new
chr10	18206126	18206794	ENSG00000235020.4|AL390783.1|lncRNA|chr10:18206126:18206794:-	0	-
#Deleted in new
chr10	18224286	18224334	ENSG00000235020.4|AL390783.1|lncRNA|chr10:18224286:18224334:-	0	-
#Partially deleted in new
chr10	18234167	18234259	ENSG00000235020.4|AL390783.1|lncRNA|chr10:18234167:18234259:-	0	-
#Partially deleted in new
chr10	18256578	18257320	ENSG00000235020.4|AL390783.1|lncRNA|chr10:18256578:18257320:-	0	-
#Deleted in new
chr10	18513114	18513660	ENSG00000240291.1|AL450384.2|lncRNA|chr10:18513114:18513660:-	0	-
#Deleted in new
chr10	18531848	18531961	ENSG00000225527.1|AL450384.1|lncRNA|chr10:18531848:18531961:-	0	-
#Deleted in new
chr10	18533036	18533336	ENSG00000225527.1|AL450384.1|lncRNA|chr10:18533036:18533336:-	0	-
#Deleted in new
chr10	18541585	18542177	ENSG00000240291.1|AL450384.2|lncRNA|chr10:18541585:18542177:-	0	-
#Deleted in new
chr10	18542068	18542177	ENSG00000240291.1|AL450384.2|lncRNA|chr10:18542068:18542177:-	0	-
#Deleted in new
chr10	18653283	18653459	ENSG00000241058.3|NSUN6|pc|chr10:18653283:18653459:-	0	-
#Deleted in new
chr10	18746432	18746791	ENSG00000234244.1|AL512641.1|lncRNA|chr10:18746432:18746791:+	0	+
#Deleted in new
chr10	18747664	18747853	ENSG00000234244.1|AL512641.1|lncRNA|chr10:18747664:18747853:+	0	+
#Deleted in new
chr10	19290222	19290466	ENSG00000227734.1|AL590378.1|lncRNA|chr10:19290222:19290466:-	0	-
#Deleted in new
chr10	19291421	19291480	ENSG00000227734.1|AL590378.1|lncRNA|chr10:19291421:19291480:-	0	-
#Deleted in new
chr10	19488594	19488673	ENSG00000204740.10|MALRD1|pc|chr10:19488594:19488673:+	0	+
#Deleted in new
chr10	19493236	19493314	ENSG00000204740.10|MALRD1|pc|chr10:19493236:19493314:+	0	+
#Partially deleted in new
chr10	19710327	19711288	ENSG00000233968.6|AL157895.1|lncRNA|chr10:19710327:19711288:-	0	-
#Deleted in new
chr10	19716798	19716890	ENSG00000233968.6|AL157895.1|lncRNA|chr10:19716798:19716890:-	0	-
#Deleted in new
chr10	19721587	19722225	ENSG00000233968.6|AL157895.1|lncRNA|chr10:19721587:19722225:-	0	-
#Deleted in new
chr10	19721977	19722225	ENSG00000233968.6|AL157895.1|lncRNA|chr10:19721977:19722225:-	0	-
#Deleted in new
chr10	19722113	19722225	ENSG00000233968.6|AL157895.1|lncRNA|chr10:19722113:19722225:-	0	-
#Deleted in new
chr10	19722329	19722422	ENSG00000233968.6|AL157895.1|lncRNA|chr10:19722329:19722422:-	0	-
#Deleted in new
chr10	19722329	19722588	ENSG00000233968.6|AL157895.1|lncRNA|chr10:19722329:19722588:-	0	-
#Deleted in new
chr10	19724926	19724981	ENSG00000233968.6|AL157895.1|lncRNA|chr10:19724926:19724981:-	0	-
#Deleted in new
chr10	19790136	19790401	ENSG00000204740.10|MALRD1|pc|chr10:19790136:19790401:+	0	+
#Deleted in new
chr10	197910	198005	ENSG00000015171.19|ZMYND11|pc|chr10:197910:198005:+	0	+
#Deleted in new
chr10	197940	198005	ENSG00000015171.19|ZMYND11|pc|chr10:197940:198005:+	0	+
#Deleted in new
chr10	2005472	2007143	ENSG00000234962.5|LINC00700|lncRNA|chr10:2005472:2007143:-	0	-
#Deleted in new
chr10	20070804	20071252	ENSG00000238246.1|AC069549.1|lncRNA|chr10:20070804:20071252:-	0	-
#Partially deleted in new
chr10	2012652	2012971	ENSG00000234962.5|LINC00700|lncRNA|chr10:2012652:2012971:-	0	-
#Deleted in new
chr10	2013246	2013411	ENSG00000234962.5|LINC00700|lncRNA|chr10:2013246:2013411:-	0	-
#Deleted in new
chr10	2013246	2013458	ENSG00000234962.5|LINC00700|lncRNA|chr10:2013246:2013458:-	0	-
#Deleted in new
chr10	2013246	2013505	ENSG00000234962.5|LINC00700|lncRNA|chr10:2013246:2013505:-	0	-
#Deleted in new
chr10	2071844	2071975	ENSG00000226694.2|AL441943.1|lncRNA|chr10:2071844:2071975:+	0	+
#Deleted in new
chr10	21354670	21354764	ENSG00000230109.1|AL158209.1|lncRNA|chr10:21354670:21354764:-	0	-
#Deleted in new
chr10	21369966	21370115	ENSG00000230109.1|AL158209.1|lncRNA|chr10:21369966:21370115:-	0	-
#Deleted in new
chr10	21541262	21541361	ENSG00000078403.16|MLLT10|pc|chr10:21541262:21541361:+	0	+
#Deleted in new
chr10	21551815	21551921	ENSG00000078403.16|MLLT10|pc|chr10:21551815:21551921:+	0	+
#Deleted in new
chr10	21556642	21556677	ENSG00000078403.16|MLLT10|pc|chr10:21556642:21556677:+	0	+
#Deleted in new
chr10	21556642	21557025	ENSG00000078403.16|MLLT10|pc|chr10:21556642:21557025:+	0	+
#Deleted in new
chr10	21556642	21557182	ENSG00000078403.16|MLLT10|pc|chr10:21556642:21557182:+	0	+
#Deleted in new
chr10	21557620	21557824	ENSG00000078403.16|MLLT10|pc|chr10:21557620:21557824:+	0	+
#Deleted in new
chr10	21571974	21572026	ENSG00000078403.16|MLLT10|pc|chr10:21571974:21572026:+	0	+
#Deleted in new
chr10	2166331	2166405	ENSG00000227912.1|AL441943.2|lncRNA|chr10:2166331:2166405:+	0	+
#Partially deleted in new
chr10	2167213	2169460	ENSG00000227912.1|AL441943.2|lncRNA|chr10:2167213:2169460:+	0	+
#Deleted in new
chr10	21688490	21688538	ENSG00000078403.16|MLLT10|pc|chr10:21688490:21688538:+	0	+
#Deleted in new
chr10	2172739	2172834	ENSG00000231326.6|AL441943.3|lncRNA|chr10:2172739:2172834:-	0	-
#Deleted in new
chr10	21860743	21860906	ENSG00000136770.10|DNAJC1|pc|chr10:21860743:21860906:-	0	-
#Deleted in new
chr10	21865334	21865921	ENSG00000279623.1|AL359697.1|lncRNA|chr10:21865334:21865921:-	0	-
#Deleted in new
chr10	2189461	2189474	ENSG00000231326.6|AL441943.3|lncRNA|chr10:2189461:2189474:-	0	-
#Deleted in new
chr10	22218073	22221168	ENSG00000260205.1|AL157831.2|lncRNA|chr10:22218073:22221168:+	0	+
#Deleted in new
chr10	22360821	22360867	ENSG00000077327.15|SPAG6|pc|chr10:22360821:22360867:+	0	+
#Deleted in new
chr10	22412444	22412523	ENSG00000077327.15|SPAG6|pc|chr10:22412444:22412523:+	0	+
#Deleted in new
chr10	22659609	22659730	ENSG00000150867.13|PIP4K2A|pc|chr10:22659609:22659730:-	0	-
#Deleted in new
chr10	22691621	22691830	ENSG00000150867.13|PIP4K2A|pc|chr10:22691621:22691830:-	0	-
#Partially deleted in new
chr10	22693952	22694639	ENSG00000279819.1|AL390318.1|lncRNA|chr10:22693952:22694639:-	0	-
#Partially deleted in new
chr10	22946143	22946683	ENSG00000165309.13|ARMC3|pc|chr10:22946143:22946683:+	0	+
#Deleted in new
chr10	22955195	22955389	ENSG00000165309.13|ARMC3|pc|chr10:22955195:22955389:+	0	+
#Partially deleted in new
chr10	22959860	22959927	ENSG00000165309.13|ARMC3|pc|chr10:22959860:22959927:+	0	+
#Deleted in new
chr10	23014099	23014489	ENSG00000165309.13|ARMC3|pc|chr10:23014099:23014489:+	0	+
#Partially deleted in new
chr10	23120757	23122013	ENSG00000148450.12|MSRB2|pc|chr10:23120757:23122013:+	0	+
#Deleted in new
chr10	23316736	23318918	ENSG00000179133.12|C10orf67|pc|chr10:23316736:23318918:-	0	-
#Deleted in new
chr10	244470	244600	ENSG00000015171.19|ZMYND11|pc|chr10:244470:244600:+	0	+
#Partially deleted in new
chr10	2446252	2446950	ENSG00000234170.5|AC024908.1|lncRNA|chr10:2446252:2446950:-	0	-
#Partially deleted in new
chr10	2446257	2446913	ENSG00000234170.5|AC024908.1|lncRNA|chr10:2446257:2446913:-	0	-
#Partially deleted in new
chr10	24629013	24630050	ENSG00000107863.17|ARHGAP21|pc|chr10:24629013:24630050:-	0	-
#Partially deleted in new
chr10	24629523	24629862	ENSG00000107863.17|ARHGAP21|pc|chr10:24629523:24629862:-	0	-
#Partially deleted in new
chr10	24723561	24723668	ENSG00000107863.17|ARHGAP21|pc|chr10:24723561:24723668:-	0	-
#Deleted in new
chr10	2499720	2499808	ENSG00000237500.1|AL713851.2|lncRNA|chr10:2499720:2499808:+	0	+
#Deleted in new
chr10	2500326	2500570	ENSG00000237500.1|AL713851.2|lncRNA|chr10:2500326:2500570:+	0	+
#Deleted in new
chr10	2501782	2501989	ENSG00000235281.1|AL713851.1|lncRNA|chr10:2501782:2501989:+	0	+
#Deleted in new
chr10	2501802	2501989	ENSG00000235281.1|AL713851.1|lncRNA|chr10:2501802:2501989:+	0	+
#Partially deleted in new
chr10	25117291	25117413	ENSG00000231422.2|LINC01516|lncRNA|chr10:25117291:25117413:+	0	+
#Deleted in new
chr10	2537492	2537625	ENSG00000235281.1|AL713851.1|lncRNA|chr10:2537492:2537625:+	0	+
#Partially deleted in new
chr10	25466189	25466358	ENSG00000151025.9|GPR158|pc|chr10:25466189:25466358:+	0	+
#Deleted in new
chr10	25673189	25673416	ENSG00000280809.2|LINC00836|lncRNA|chr10:25673189:25673416:+	0	+
#Deleted in new
chr10	25695866	25695953	ENSG00000280809.2|LINC00836|lncRNA|chr10:25695866:25695953:+	0	+
#Deleted in new
chr10	25716744	25716981	ENSG00000280809.2|LINC00836|lncRNA|chr10:25716744:25716981:+	0	+
#Deleted in new
chr10	25731620	25731672	ENSG00000280809.2|LINC00836|lncRNA|chr10:25731620:25731672:+	0	+
#Deleted in new
chr10	25731620	25732935	ENSG00000280809.2|LINC00836|lncRNA|chr10:25731620:25732935:+	0	+
#Deleted in new
chr10	25924447	25924521	ENSG00000226304.1|AL358612.1|lncRNA|chr10:25924447:25924521:-	0	-
#Deleted in new
chr10	25932307	25932361	ENSG00000226304.1|AL358612.1|lncRNA|chr10:25932307:25932361:-	0	-
#Deleted in new
chr10	25933553	25933710	ENSG00000226304.1|AL358612.1|lncRNA|chr10:25933553:25933710:-	0	-
#Deleted in new
chr10	25934266	25934328	ENSG00000095777.14|MYO3A|pc|chr10:25934266:25934328:+	0	+
#Deleted in new
chr10	25934273	25934328	ENSG00000095777.14|MYO3A|pc|chr10:25934273:25934328:+	0	+
#Deleted in new
chr10	26644913	26645016	ENSG00000234296.1|AL390961.2|lncRNA|chr10:26644913:26645016:+	0	+
#Partially deleted in new
chr10	26695090	26697625	ENSG00000279212.1|AL390961.4|lncRNA|chr10:26695090:26697625:-	0	-
#Deleted in new
chr10	26702161	26702194	ENSG00000148459.15|PDSS1|pc|chr10:26702161:26702194:+	0	+
#Deleted in new
chr10	26839732	26839783	ENSG00000136754.17|ABI1|pc|chr10:26839732:26839783:-	0	-
#Deleted in new
chr10	26991913	26992005	ENSG00000107890.16|ANKRD26|pc|chr10:26991913:26992005:-	0	-
#Deleted in new
chr10	26995040	26995147	ENSG00000107890.16|ANKRD26|pc|chr10:26995040:26995147:-	0	-
#Partially deleted in new
chr10	27077022	27077540	ENSG00000107890.16|ANKRD26|pc|chr10:27077022:27077540:-	0	-
#Deleted in new
chr10	27080031	27080178	ENSG00000107890.16|ANKRD26|pc|chr10:27080031:27080178:-	0	-
#Deleted in new
chr10	27129236	27129357	ENSG00000136758.18|YME1L1|pc|chr10:27129236:27129357:-	0	-
#Partially deleted in new
chr10	27145418	27147668	ENSG00000136758.18|YME1L1|pc|chr10:27145418:27147668:-	0	-
#Deleted in new
chr10	27147497	27147668	ENSG00000136758.18|YME1L1|pc|chr10:27147497:27147668:-	0	-
#Deleted in new
chr10	27220372	27220464	ENSG00000107897.18|ACBD5|pc|chr10:27220372:27220464:-	0	-
#Deleted in new
chr10	27243129	27243384	ENSG00000262412.1|AL160291.1|lncRNA|chr10:27243129:27243384:+	0	+
#Partially deleted in new
chr10	27343435	27344651	ENSG00000260151.1|AL355493.2|lncRNA|chr10:27343435:27344651:+	0	+
#Deleted in new
chr10	27344738	27344917	ENSG00000260151.1|AL355493.2|lncRNA|chr10:27344738:27344917:+	0	+
#Deleted in new
chr10	27513962	27514217	ENSG00000099246.16|RAB18|pc|chr10:27513962:27514217:+	0	+
#Deleted in new
chr10	27531528	27531615	ENSG00000099246.16|RAB18|pc|chr10:27531528:27531615:+	0	+
#Deleted in new
chr10	27764650	27764773	ENSG00000230500.1|MKX-AS1|lncRNA|chr10:27764650:27764773:+	0	+
#Deleted in new
chr10	27813272	27813442	ENSG00000169126.15|ARMC4|pc|chr10:27813272:27813442:-	0	-
#Deleted in new
chr10	27835980	27836163	ENSG00000169126.15|ARMC4|pc|chr10:27835980:27836163:-	0	-
#Deleted in new
chr10	27998993	27999048	ENSG00000169126.15|ARMC4|pc|chr10:27998993:27999048:-	0	-
#Deleted in new
chr10	28049391	28049615	ENSG00000233472.1|AL390866.1|lncRNA|chr10:28049391:28049615:+	0	+
#Partially deleted in new
chr10	28254773	28254876	ENSG00000150054.18|MPP7|pc|chr10:28254773:28254876:-	0	-
#Deleted in new
chr10	28280099	28280140	ENSG00000150054.18|MPP7|pc|chr10:28280099:28280140:-	0	-
#Deleted in new
chr10	28280099	28280142	ENSG00000150054.18|MPP7|pc|chr10:28280099:28280142:-	0	-
#Deleted in new
chr10	28305398	28305966	ENSG00000282996.1|AC022021.1|lncRNA|chr10:28305398:28305966:+	0	+
#Deleted in new
chr10	28307552	28307658	ENSG00000282996.1|AC022021.1|lncRNA|chr10:28307552:28307658:+	0	+
#Deleted in new
chr10	28334417	28334486	ENSG00000150054.18|MPP7|pc|chr10:28334417:28334486:-	0	-
#Deleted in new
chr10	28495720	28495813	ENSG00000237128.1|AL358234.1|lncRNA|chr10:28495720:28495813:-	0	-
#Partially deleted in new
chr10	28522651	28524611	ENSG00000254635.5|WAC-AS1|lncRNA|chr10:28522651:28524611:-	0	-
#Partially deleted in new
chr10	28522684	28524611	ENSG00000254635.5|WAC-AS1|lncRNA|chr10:28522684:28524611:-	0	-
#Deleted in new
chr10	28525947	28526008	ENSG00000254635.5|WAC-AS1|lncRNA|chr10:28525947:28526008:-	0	-
#Partially deleted in new
chr10	28531734	28532354	ENSG00000254635.5|WAC-AS1|lncRNA|chr10:28531734:28532354:-	0	-
#Partially deleted in new
chr10	28588736	28589851	ENSG00000095787.21|WAC|pc|chr10:28588736:28589851:+	0	+
#Deleted in new
chr10	28743744	28744107	ENSG00000236716.1|AL355376.1|lncRNA|chr10:28743744:28744107:+	0	+
#Deleted in new
chr10	28744509	28744663	ENSG00000236716.1|AL355376.1|lncRNA|chr10:28744509:28744663:+	0	+
#Split in new
chr10	28789187	28792944	ENSG00000235824.4|LINC00837|lncRNA|chr10:28789187:28792944:-	0	-
#Deleted in new
chr10	28792568	28792944	ENSG00000235824.4|LINC00837|lncRNA|chr10:28792568:28792944:-	0	-
#Deleted in new
chr10	28792667	28792869	ENSG00000232624.6|LINC01517|lncRNA|chr10:28792667:28792869:+	0	+
#Deleted in new
chr10	28792667	28792944	ENSG00000235824.4|LINC00837|lncRNA|chr10:28792667:28792944:-	0	-
#Deleted in new
chr10	28792691	28792944	ENSG00000235824.4|LINC00837|lncRNA|chr10:28792691:28792944:-	0	-
#Deleted in new
chr10	28792802	28792869	ENSG00000232624.6|LINC01517|lncRNA|chr10:28792802:28792869:+	0	+
#Deleted in new
chr10	28793647	28793984	ENSG00000232624.6|LINC01517|lncRNA|chr10:28793647:28793984:+	0	+
#Deleted in new
chr10	28793676	28794133	ENSG00000232624.6|LINC01517|lncRNA|chr10:28793676:28794133:+	0	+
#Deleted in new
chr10	28793911	28794133	ENSG00000232624.6|LINC01517|lncRNA|chr10:28793911:28794133:+	0	+
#Deleted in new
chr10	28794541	28794643	ENSG00000235824.4|LINC00837|lncRNA|chr10:28794541:28794643:-	0	-
#Deleted in new
chr10	28794716	28795376	ENSG00000235824.4|LINC00837|lncRNA|chr10:28794716:28795376:-	0	-
#Deleted in new
chr10	28795772	28795972	ENSG00000235824.4|LINC00837|lncRNA|chr10:28795772:28795972:-	0	-
#Deleted in new
chr10	28795772	28796006	ENSG00000235824.4|LINC00837|lncRNA|chr10:28795772:28796006:-	0	-
#Deleted in new
chr10	28795893	28796113	ENSG00000235824.4|LINC00837|lncRNA|chr10:28795893:28796113:-	0	-
#Deleted in new
chr10	28795951	28796124	ENSG00000232624.6|LINC01517|lncRNA|chr10:28795951:28796124:+	0	+
#Deleted in new
chr10	28806046	28806054	ENSG00000232624.6|LINC01517|lncRNA|chr10:28806046:28806054:+	0	+
#Deleted in new
chr10	28806046	28806138	ENSG00000232624.6|LINC01517|lncRNA|chr10:28806046:28806138:+	0	+
#Deleted in new
chr10	28846407	28846463	ENSG00000204365.5|C10orf126|pc|chr10:28846407:28846463:+	0	+
#Deleted in new
chr10	28847118	28847263	ENSG00000204365.5|C10orf126|pc|chr10:28847118:28847263:+	0	+
#Deleted in new
chr10	28847240	28847263	ENSG00000204365.5|C10orf126|pc|chr10:28847240:28847263:+	0	+
#Deleted in new
chr10	28848215	28848366	ENSG00000204365.5|C10orf126|pc|chr10:28848215:28848366:+	0	+
#Deleted in new
chr10	28873255	28873291	ENSG00000204365.5|C10orf126|pc|chr10:28873255:28873291:+	0	+
#Deleted in new
chr10	29420490	29420524	ENSG00000224597.9|SVIL-AS1|lncRNA|chr10:29420490:29420524:+	0	+
#Deleted in new
chr10	29420490	29420748	ENSG00000224597.9|SVIL-AS1|lncRNA|chr10:29420490:29420748:+	0	+
#Deleted in new
chr10	29420490	29420750	ENSG00000224597.9|SVIL-AS1|lncRNA|chr10:29420490:29420750:+	0	+
#Deleted in new
chr10	29467239	29467278	ENSG00000224597.9|SVIL-AS1|lncRNA|chr10:29467239:29467278:+	0	+
#Deleted in new
chr10	29473533	29473687	ENSG00000197321.14|SVIL|pc|chr10:29473533:29473687:-	0	-
#Deleted in new
chr10	29475354	29475491	ENSG00000197321.14|SVIL|pc|chr10:29475354:29475491:-	0	-
#Partially deleted in new
chr10	29482832	29483185	ENSG00000224597.9|SVIL-AS1|lncRNA|chr10:29482832:29483185:+	0	+
#Partially deleted in new
chr10	29508030	29508389	ENSG00000197321.14|SVIL|pc|chr10:29508030:29508389:-	0	-
#Deleted in new
chr10	30012802	30013050	ENSG00000165757.8|JCAD|pc|chr10:30012802:30013050:-	0	-
#Deleted in new
chr10	30013482	30013918	ENSG00000165757.8|JCAD|pc|chr10:30013482:30013918:-	0	-
#Deleted in new
chr10	30069699	30069821	ENSG00000165757.8|JCAD|pc|chr10:30069699:30069821:-	0	-
#Deleted in new
chr10	3011589	3011705	ENSG00000234182.1|AL731533.1|lncRNA|chr10:3011589:3011705:+	0	+
#Deleted in new
chr10	3012818	3013111	ENSG00000234182.1|AL731533.1|lncRNA|chr10:3012818:3013111:+	0	+
#Partially deleted in new
chr10	30309800	30313971	ENSG00000107951.14|MTPAP|pc|chr10:30309800:30313971:-	0	-
#Deleted in new
chr10	30576698	30576837	ENSG00000230298.1|AL590068.2|lncRNA|chr10:30576698:30576837:+	0	+
#Deleted in new
chr10	30579943	30580182	ENSG00000230298.1|AL590068.2|lncRNA|chr10:30579943:30580182:+	0	+
#Partially deleted in new
chr10	3066332	3066422	ENSG00000067057.16|PFKP|pc|chr10:3066332:3066422:+	0	+
#Deleted in new
chr10	30820206	30820444	ENSG00000183621.15|ZNF438|pc|chr10:30820206:30820444:-	0	-
#Deleted in new
chr10	30908932	30909015	ENSG00000183621.15|ZNF438|pc|chr10:30908932:30909015:-	0	-
#Deleted in new
chr10	30984368	30984426	ENSG00000183621.15|ZNF438|pc|chr10:30984368:30984426:-	0	-
#Deleted in new
chr10	30999337	30999517	ENSG00000183621.15|ZNF438|pc|chr10:30999337:30999517:-	0	-
#Deleted in new
chr10	31307716	31308152	ENSG00000237036.4|ZEB1-AS1|lncRNA|chr10:31307716:31308152:-	0	-
#Deleted in new
chr10	31307992	31308152	ENSG00000237036.4|ZEB1-AS1|lncRNA|chr10:31307992:31308152:-	0	-
#Deleted in new
chr10	31309892	31310015	ENSG00000237036.4|ZEB1-AS1|lncRNA|chr10:31309892:31310015:-	0	-
#Deleted in new
chr10	31355143	31355192	ENSG00000148516.21|ZEB1|pc|chr10:31355143:31355192:+	0	+
#Deleted in new
chr10	31355146	31355192	ENSG00000148516.21|ZEB1|pc|chr10:31355146:31355192:+	0	+
#Deleted in new
chr10	31358144	31358590	ENSG00000148516.21|ZEB1|pc|chr10:31358144:31358590:+	0	+
#Deleted in new
chr10	31381722	31381829	ENSG00000148516.21|ZEB1|pc|chr10:31381722:31381829:+	0	+
#Deleted in new
chr10	31389604	31389660	ENSG00000148516.21|ZEB1|pc|chr10:31389604:31389660:+	0	+
#Deleted in new
chr10	31389604	31389695	ENSG00000148516.21|ZEB1|pc|chr10:31389604:31389695:+	0	+
#Deleted in new
chr10	3141507	3141737	ENSG00000107959.15|PITRM1|pc|chr10:3141507:3141737:-	0	-
#Deleted in new
chr10	3141631	3141769	ENSG00000237399.7|PITRM1-AS1|lncRNA|chr10:3141631:3141769:+	0	+
#Deleted in new
chr10	3141671	3141769	ENSG00000237399.7|PITRM1-AS1|lncRNA|chr10:3141671:3141769:+	0	+
#Deleted in new
chr10	3164094	3164249	ENSG00000237399.7|PITRM1-AS1|lncRNA|chr10:3164094:3164249:+	0	+
#Deleted in new
chr10	3164094	3164285	ENSG00000237399.7|PITRM1-AS1|lncRNA|chr10:3164094:3164285:+	0	+
#Deleted in new
chr10	3167831	3167972	ENSG00000237399.7|PITRM1-AS1|lncRNA|chr10:3167831:3167972:+	0	+
#Deleted in new
chr10	31693083	31693347	ENSG00000237797.1|AL161935.3|lncRNA|chr10:31693083:31693347:-	0	-
#Deleted in new
chr10	3223815	3223850	ENSG00000236968.1|AL451164.2|lncRNA|chr10:3223815:3223850:+	0	+
#Deleted in new
chr10	3225587	3225728	ENSG00000236968.1|AL451164.2|lncRNA|chr10:3225587:3225728:+	0	+
#Deleted in new
chr10	32266288	32266410	ENSG00000227253.3|AL158834.2|lncRNA|chr10:32266288:32266410:+	0	+
#Deleted in new
chr10	32266329	32266410	ENSG00000227253.3|AL158834.2|lncRNA|chr10:32266329:32266410:+	0	+
#Deleted in new
chr10	32266684	32266990	ENSG00000227253.3|AL158834.2|lncRNA|chr10:32266684:32266990:+	0	+
#Deleted in new
chr10	32281685	32281812	ENSG00000226842.1|AL158834.1|lncRNA|chr10:32281685:32281812:+	0	+
#Deleted in new
chr10	32347396	32347475	ENSG00000229327.1|AL391839.1|lncRNA|chr10:32347396:32347475:+	0	+
#Partially deleted in new
chr10	32446386	32446631	ENSG00000216937.13|CCDC7|pc|chr10:32446386:32446631:+	0	+
#Deleted in new
chr10	324638	325019	ENSG00000151240.16|DIP2C|pc|chr10:324638:325019:-	0	-
#Deleted in new
chr10	32472480	32472542	ENSG00000216937.13|CCDC7|pc|chr10:32472480:32472542:+	0	+
#Deleted in new
chr10	32473966	32474023	ENSG00000216937.13|CCDC7|pc|chr10:32473966:32474023:+	0	+
#Deleted in new
chr10	32481710	32481782	ENSG00000216937.13|CCDC7|pc|chr10:32481710:32481782:+	0	+
#Deleted in new
chr10	32499106	32499381	ENSG00000216937.13|CCDC7|pc|chr10:32499106:32499381:+	0	+
#Partially deleted in new
chr10	32511508	32514584	ENSG00000216937.13|CCDC7|pc|chr10:32511508:32514584:+	0	+
#Deleted in new
chr10	32512464	32512676	ENSG00000216937.13|CCDC7|pc|chr10:32512464:32512676:+	0	+
#Deleted in new
chr10	32543299	32543385	ENSG00000216937.13|CCDC7|pc|chr10:32543299:32543385:+	0	+
#Deleted in new
chr10	32543299	32543386	ENSG00000216937.13|CCDC7|pc|chr10:32543299:32543386:+	0	+
#Deleted in new
chr10	32543325	32543385	ENSG00000216937.13|CCDC7|pc|chr10:32543325:32543385:+	0	+
#Deleted in new
chr10	32544246	32544301	ENSG00000216937.13|CCDC7|pc|chr10:32544246:32544301:+	0	+
#Deleted in new
chr10	32544246	32544437	ENSG00000216937.13|CCDC7|pc|chr10:32544246:32544437:+	0	+
#Deleted in new
chr10	3256459	3256557	ENSG00000226762.1|AL451164.1|lncRNA|chr10:3256459:3256557:-	0	-
#Partially deleted in new
chr10	3257143	3257210	ENSG00000226762.1|AL451164.1|lncRNA|chr10:3257143:3257210:-	0	-
#Deleted in new
chr10	32623718	32623817	ENSG00000216937.13|CCDC7|pc|chr10:32623718:32623817:+	0	+
#Deleted in new
chr10	3266002	3266107	ENSG00000227338.1|AL139280.1|lncRNA|chr10:3266002:3266107:+	0	+
#Deleted in new
chr10	32664053	32664161	ENSG00000216937.13|CCDC7|pc|chr10:32664053:32664161:+	0	+
#Deleted in new
chr10	3266657	3267015	ENSG00000227338.1|AL139280.1|lncRNA|chr10:3266657:3267015:+	0	+
#Deleted in new
chr10	32675664	32675813	ENSG00000216937.13|CCDC7|pc|chr10:32675664:32675813:+	0	+
#Deleted in new
chr10	32805014	32805098	ENSG00000216937.13|CCDC7|pc|chr10:32805014:32805098:+	0	+
#Deleted in new
chr10	32814369	32814453	ENSG00000216937.13|CCDC7|pc|chr10:32814369:32814453:+	0	+
#Deleted in new
chr10	32845242	32845326	ENSG00000216937.13|CCDC7|pc|chr10:32845242:32845326:+	0	+
#Deleted in new
chr10	32845875	32845959	ENSG00000216937.13|CCDC7|pc|chr10:32845875:32845959:+	0	+
#Deleted in new
chr10	32936216	32936251	ENSG00000150093.18|ITGB1|pc|chr10:32936216:32936251:-	0	-
#Deleted in new
chr10	32951674	32951758	ENSG00000150093.18|ITGB1|pc|chr10:32951674:32951758:-	0	-
#Partially deleted in new
chr10	32957758	32957794	ENSG00000150093.18|ITGB1|pc|chr10:32957758:32957794:-	0	-
#Deleted in new
chr10	32958844	32958903	ENSG00000229656.6|AL365203.1|lncRNA|chr10:32958844:32958903:+	0	+
#Deleted in new
chr10	32960289	32960366	ENSG00000150093.18|ITGB1|pc|chr10:32960289:32960366:-	0	-
#Deleted in new
chr10	32960324	32960503	ENSG00000150093.18|ITGB1|pc|chr10:32960324:32960503:-	0	-
#Deleted in new
chr10	32960969	32961062	ENSG00000229656.6|AL365203.1|lncRNA|chr10:32960969:32961062:+	0	+
#Deleted in new
chr10	32961107	32961160	ENSG00000150093.18|ITGB1|pc|chr10:32961107:32961160:-	0	-
#Deleted in new
chr10	32982540	32982685	ENSG00000229656.6|AL365203.1|lncRNA|chr10:32982540:32982685:+	0	+
#Deleted in new
chr10	32985622	32985757	ENSG00000229656.6|AL365203.1|lncRNA|chr10:32985622:32985757:+	0	+
#Deleted in new
chr10	32992330	32992463	ENSG00000150093.18|ITGB1|pc|chr10:32992330:32992463:-	0	-
#Partially deleted in new
chr10	33096256	33096606	ENSG00000233387.1|AL121748.1|lncRNA|chr10:33096256:33096606:-	0	-
#Partially deleted in new
chr10	33205448	33206353	ENSG00000099250.17|NRP1|pc|chr10:33205448:33206353:-	0	-
#Partially deleted in new
chr10	33341654	33341905	ENSG00000273012.1|AL353600.1|lncRNA|chr10:33341654:33341905:+	0	+
#Deleted in new
chr10	33590621	33590769	ENSG00000226412.1|AC018980.1|lncRNA|chr10:33590621:33590769:-	0	-
#Deleted in new
chr10	33599857	33600040	ENSG00000226412.1|AC018980.1|lncRNA|chr10:33599857:33600040:-	0	-
#Deleted in new
chr10	33684754	33685181	ENSG00000203565.2|AL450313.1|lncRNA|chr10:33684754:33685181:+	0	+
#Deleted in new
chr10	33909237	33909322	ENSG00000223470.3|AL117338.1|lncRNA|chr10:33909237:33909322:+	0	+
#Deleted in new
chr10	33909414	33909498	ENSG00000223470.3|AL117338.1|lncRNA|chr10:33909414:33909498:+	0	+
#Deleted in new
chr10	33910278	33910413	ENSG00000223470.3|AL117338.1|lncRNA|chr10:33910278:33910413:+	0	+
#Deleted in new
chr10	34426684	34426731	ENSG00000148498.15|PARD3|pc|chr10:34426684:34426731:-	0	-
#Deleted in new
chr10	3486893	3487010	ENSG00000233321.1|AL357833.1|lncRNA|chr10:3486893:3487010:-	0	-
#Deleted in new
chr10	3496152	3496236	ENSG00000233321.1|AL357833.1|lncRNA|chr10:3496152:3496236:-	0	-
#Deleted in new
chr10	34969908	34969954	ENSG00000283000.1|AL392046.2|lncRNA|chr10:34969908:34969954:+	0	+
#Deleted in new
chr10	34973983	34974088	ENSG00000283000.1|AL392046.2|lncRNA|chr10:34973983:34974088:+	0	+
#Deleted in new
chr10	34974193	34974282	ENSG00000283000.1|AL392046.2|lncRNA|chr10:34974193:34974282:+	0	+
#Deleted in new
chr10	34974657	34975576	ENSG00000283000.1|AL392046.2|lncRNA|chr10:34974657:34975576:+	0	+
#Deleted in new
chr10	34974657	34975578	ENSG00000283000.1|AL392046.2|lncRNA|chr10:34974657:34975578:+	0	+
#Deleted in new
chr10	3497652	3497724	ENSG00000233321.1|AL357833.1|lncRNA|chr10:3497652:3497724:-	0	-
#Deleted in new
chr10	3499183	3499234	ENSG00000233321.1|AL357833.1|lncRNA|chr10:3499183:3499234:-	0	-
#Deleted in new
chr10	35063845	35064116	ENSG00000108094.14|CUL2|pc|chr10:35063845:35064116:-	0	-
#Deleted in new
chr10	35074078	35074330	ENSG00000108094.14|CUL2|pc|chr10:35074078:35074330:-	0	-
#Deleted in new
chr10	35074191	35074286	ENSG00000108094.14|CUL2|pc|chr10:35074191:35074286:-	0	-
#Deleted in new
chr10	35074191	35074288	ENSG00000108094.14|CUL2|pc|chr10:35074191:35074288:-	0	-
#Deleted in new
chr10	35098005	35098122	ENSG00000230534.6|AL392046.1|lncRNA|chr10:35098005:35098122:-	0	-
#Deleted in new
chr10	35099513	35099600	ENSG00000230534.6|AL392046.1|lncRNA|chr10:35099513:35099600:-	0	-
#Deleted in new
chr10	35100843	35101060	ENSG00000230534.6|AL392046.1|lncRNA|chr10:35100843:35101060:-	0	-
#Deleted in new
chr10	35100889	35101060	ENSG00000230534.6|AL392046.1|lncRNA|chr10:35100889:35101060:-	0	-
#Deleted in new
chr10	35118182	35118740	ENSG00000230534.6|AL392046.1|lncRNA|chr10:35118182:35118740:-	0	-
#Deleted in new
chr10	35119985	35120035	ENSG00000230534.6|AL392046.1|lncRNA|chr10:35119985:35120035:-	0	-
#Deleted in new
chr10	35120410	35120505	ENSG00000230534.6|AL392046.1|lncRNA|chr10:35120410:35120505:-	0	-
#Partially deleted in new
chr10	35126567	35126660	ENSG00000230534.6|AL392046.1|lncRNA|chr10:35126567:35126660:-	0	-
#Deleted in new
chr10	35126604	35126657	ENSG00000230534.6|AL392046.1|lncRNA|chr10:35126604:35126657:-	0	-
#Deleted in new
chr10	35137781	35137879	ENSG00000095794.19|CREM|pc|chr10:35137781:35137879:+	0	+
#Deleted in new
chr10	35137835	35137879	ENSG00000095794.19|CREM|pc|chr10:35137835:35137879:+	0	+
#Deleted in new
chr10	35154060	35154565	ENSG00000095794.19|CREM|pc|chr10:35154060:35154565:+	0	+
#Deleted in new
chr10	35219893	35220100	ENSG00000233200.1|AL117336.1|lncRNA|chr10:35219893:35220100:-	0	-
#Deleted in new
chr10	35230425	35230598	ENSG00000233200.1|AL117336.1|lncRNA|chr10:35230425:35230598:-	0	-
#Deleted in new
chr10	35247024	35247130	ENSG00000108100.17|CCNY|pc|chr10:35247024:35247130:+	0	+
#Deleted in new
chr10	35247048	35247130	ENSG00000108100.17|CCNY|pc|chr10:35247048:35247130:+	0	+
#Deleted in new
chr10	35248108	35248211	ENSG00000108100.17|CCNY|pc|chr10:35248108:35248211:+	0	+
#Deleted in new
chr10	35250521	35250626	ENSG00000108100.17|CCNY|pc|chr10:35250521:35250626:+	0	+
#Deleted in new
chr10	35289400	35289431	ENSG00000108100.17|CCNY|pc|chr10:35289400:35289431:+	0	+
#Deleted in new
chr10	35314551	35315425	ENSG00000271335.5|AL117336.3|lncRNA|chr10:35314551:35315425:-	0	-
#Deleted in new
chr10	35315331	35315425	ENSG00000271335.5|AL117336.3|lncRNA|chr10:35315331:35315425:-	0	-
#Deleted in new
chr10	35316319	35316409	ENSG00000271335.5|AL117336.3|lncRNA|chr10:35316319:35316409:-	0	-
#Deleted in new
chr10	35320855	35320998	ENSG00000271335.5|AL117336.3|lncRNA|chr10:35320855:35320998:-	0	-
#Deleted in new
chr10	35327678	35327757	ENSG00000108100.17|CCNY|pc|chr10:35327678:35327757:+	0	+
#Deleted in new
chr10	35335927	35336050	ENSG00000271335.5|AL117336.3|lncRNA|chr10:35335927:35336050:-	0	-
#Deleted in new
chr10	35336219	35336401	ENSG00000271335.5|AL117336.3|lncRNA|chr10:35336219:35336401:-	0	-
#Deleted in new
chr10	3536778	3536857	ENSG00000236892.1|AL357833.2|lncRNA|chr10:3536778:3536857:-	0	-
#Deleted in new
chr10	3536778	3537031	ENSG00000236892.1|AL357833.2|lncRNA|chr10:3536778:3537031:-	0	-
#Deleted in new
chr10	35394815	35394878	ENSG00000108100.17|CCNY|pc|chr10:35394815:35394878:+	0	+
#Deleted in new
chr10	35434110	35434220	ENSG00000108100.17|CCNY|pc|chr10:35434110:35434220:+	0	+
#Deleted in new
chr10	35434112	35434220	ENSG00000108100.17|CCNY|pc|chr10:35434112:35434220:+	0	+
#Deleted in new
chr10	35455356	35455463	ENSG00000108100.17|CCNY|pc|chr10:35455356:35455463:+	0	+
#Deleted in new
chr10	35778301	35778515	ENSG00000280719.1|PCAT5|lncRNA|chr10:35778301:35778515:+	0	+
#Deleted in new
chr10	36089085	36089161	ENSG00000227475.1|AL355300.1|lncRNA|chr10:36089085:36089161:-	0	-
#Deleted in new
chr10	36089278	36089389	ENSG00000227475.1|AL355300.1|lncRNA|chr10:36089278:36089389:-	0	-
#Deleted in new
chr10	36441880	36442071	ENSG00000237002.6|AL590730.1|lncRNA|chr10:36441880:36442071:+	0	+
#Deleted in new
chr10	36442316	36442392	ENSG00000237002.6|AL590730.1|lncRNA|chr10:36442316:36442392:+	0	+
#Deleted in new
chr10	37125787	37126008	ENSG00000148513.17|ANKRD30A|pc|chr10:37125787:37126008:+	0	+
#Deleted in new
chr10	37125856	37126008	ENSG00000148513.17|ANKRD30A|pc|chr10:37125856:37126008:+	0	+
#Deleted in new
chr10	37141717	37142290	ENSG00000148513.17|ANKRD30A|pc|chr10:37141717:37142290:+	0	+
#Deleted in new
chr10	37152059	37152121	ENSG00000148513.17|ANKRD30A|pc|chr10:37152059:37152121:+	0	+
#Deleted in new
chr10	37153571	37153662	ENSG00000148513.17|ANKRD30A|pc|chr10:37153571:37153662:+	0	+
#Deleted in new
chr10	37165093	37165155	ENSG00000148513.17|ANKRD30A|pc|chr10:37165093:37165155:+	0	+
#Deleted in new
chr10	37166604	37166695	ENSG00000148513.17|ANKRD30A|pc|chr10:37166604:37166695:+	0	+
#Deleted in new
chr10	37176156	37176218	ENSG00000148513.17|ANKRD30A|pc|chr10:37176156:37176218:+	0	+
#Deleted in new
chr10	37177665	37177756	ENSG00000148513.17|ANKRD30A|pc|chr10:37177665:37177756:+	0	+
#Deleted in new
chr10	37184441	37184572	ENSG00000148513.17|ANKRD30A|pc|chr10:37184441:37184572:+	0	+
#Deleted in new
chr10	37187957	37188019	ENSG00000148513.17|ANKRD30A|pc|chr10:37187957:37188019:+	0	+
#Deleted in new
chr10	37189466	37189557	ENSG00000148513.17|ANKRD30A|pc|chr10:37189466:37189557:+	0	+
#Deleted in new
chr10	37199726	37199788	ENSG00000148513.17|ANKRD30A|pc|chr10:37199726:37199788:+	0	+
#Deleted in new
chr10	37201234	37201325	ENSG00000148513.17|ANKRD30A|pc|chr10:37201234:37201325:+	0	+
#Deleted in new
chr10	37241947	37242049	ENSG00000234918.1|AL157387.1|lncRNA|chr10:37241947:37242049:+	0	+
#Deleted in new
chr10	37384058	37384111	ENSG00000148513.17|ANKRD30A|pc|chr10:37384058:37384111:+	0	+
#Deleted in new
chr10	3752504	3752622	ENSG00000229672.2|AL450322.2|lncRNA|chr10:3752504:3752622:+	0	+
#Deleted in new
chr10	3759184	3759294	ENSG00000229672.2|AL450322.2|lncRNA|chr10:3759184:3759294:+	0	+
#Partially deleted in new
chr10	3759772	3759886	ENSG00000229672.2|AL450322.2|lncRNA|chr10:3759772:3759886:+	0	+
#Deleted in new
chr10	37775370	37775532	ENSG00000226578.1|AL132657.1|lncRNA|chr10:37775370:37775532:-	0	-
#Deleted in new
chr10	37776265	37776575	ENSG00000226578.1|AL132657.1|lncRNA|chr10:37776265:37776575:-	0	-
#Deleted in new
chr10	37776525	37776575	ENSG00000198105.13|ZNF248|pc|chr10:37776525:37776575:-	0	-
#Deleted in new
chr10	37783891	37784131	ENSG00000226578.1|AL132657.1|lncRNA|chr10:37783891:37784131:-	0	-
#Deleted in new
chr10	37802822	37803692	ENSG00000198105.13|ZNF248|pc|chr10:37802822:37803692:-	0	-
#Deleted in new
chr10	37803832	37803943	ENSG00000198105.13|ZNF248|pc|chr10:37803832:37803943:-	0	-
#Deleted in new
chr10	37859077	37859110	ENSG00000236514.1|AL135791.1|lncRNA|chr10:37859077:37859110:+	0	+
#Deleted in new
chr10	37967916	37967939	ENSG00000175395.15|ZNF25|pc|chr10:37967916:37967939:-	0	-
#Deleted in new
chr10	37980288	37980410	ENSG00000226447.1|AL117337.1|lncRNA|chr10:37980288:37980410:+	0	+
#Deleted in new
chr10	37992326	37992467	ENSG00000226447.1|AL117337.1|lncRNA|chr10:37992326:37992467:+	0	+
#Deleted in new
chr10	38010649	38010783	ENSG00000189180.15|ZNF33A|pc|chr10:38010649:38010783:+	0	+
#Deleted in new
chr10	38010654	38010783	ENSG00000189180.15|ZNF33A|pc|chr10:38010654:38010783:+	0	+
#Deleted in new
chr10	38010668	38010783	ENSG00000189180.15|ZNF33A|pc|chr10:38010668:38010783:+	0	+
#Deleted in new
chr10	38010669	38010783	ENSG00000189180.15|ZNF33A|pc|chr10:38010669:38010783:+	0	+
#Deleted in new
chr10	38010685	38010783	ENSG00000189180.15|ZNF33A|pc|chr10:38010685:38010783:+	0	+
#Deleted in new
chr10	38010692	38010783	ENSG00000189180.15|ZNF33A|pc|chr10:38010692:38010783:+	0	+
#Deleted in new
chr10	38010698	38010783	ENSG00000189180.15|ZNF33A|pc|chr10:38010698:38010783:+	0	+
#Deleted in new
chr10	38012297	38012350	ENSG00000189180.15|ZNF33A|pc|chr10:38012297:38012350:+	0	+
#Deleted in new
chr10	38015966	38016045	ENSG00000189180.15|ZNF33A|pc|chr10:38015966:38016045:+	0	+
#Partially deleted in new
chr10	38017290	38017707	ENSG00000189180.15|ZNF33A|pc|chr10:38017290:38017707:+	0	+
#Partially deleted in new
chr10	38064087	38065088	ENSG00000189180.15|ZNF33A|pc|chr10:38064087:38065088:+	0	+
#Deleted in new
chr10	38094333	38094490	ENSG00000075407.18|ZNF37A|pc|chr10:38094333:38094490:+	0	+
#Deleted in new
chr10	38094335	38094490	ENSG00000075407.18|ZNF37A|pc|chr10:38094335:38094490:+	0	+
#Deleted in new
chr10	38094346	38094490	ENSG00000075407.18|ZNF37A|pc|chr10:38094346:38094490:+	0	+
#Deleted in new
chr10	38094350	38094490	ENSG00000075407.18|ZNF37A|pc|chr10:38094350:38094490:+	0	+
#Deleted in new
chr10	38094367	38094490	ENSG00000283930.1|AL117339.5|pc|chr10:38094367:38094490:+	0	+
#Deleted in new
chr10	38094930	38095224	ENSG00000075407.18|ZNF37A|pc|chr10:38094930:38095224:+	0	+
#Deleted in new
chr10	38094930	38095224	ENSG00000283930.1|AL117339.5|pc|chr10:38094930:38095224:+	0	+
#Deleted in new
chr10	38095357	38095633	ENSG00000075407.18|ZNF37A|pc|chr10:38095357:38095633:+	0	+
#Deleted in new
chr10	38095537	38095559	ENSG00000075407.18|ZNF37A|pc|chr10:38095537:38095559:+	0	+
#Deleted in new
chr10	38095537	38095629	ENSG00000075407.18|ZNF37A|pc|chr10:38095537:38095629:+	0	+
#Deleted in new
chr10	38095537	38095629	ENSG00000283930.1|AL117339.5|pc|chr10:38095537:38095629:+	0	+
#Deleted in new
chr10	38095537	38095633	ENSG00000075407.18|ZNF37A|pc|chr10:38095537:38095633:+	0	+
#Deleted in new
chr10	38095743	38095804	ENSG00000075407.18|ZNF37A|pc|chr10:38095743:38095804:+	0	+
#Deleted in new
chr10	38095743	38095804	ENSG00000283930.1|AL117339.5|pc|chr10:38095743:38095804:+	0	+
#Deleted in new
chr10	38096573	38096632	ENSG00000075407.18|ZNF37A|pc|chr10:38096573:38096632:+	0	+
#Deleted in new
chr10	38096573	38096632	ENSG00000283930.1|AL117339.5|pc|chr10:38096573:38096632:+	0	+
#Partially deleted in new
chr10	38115194	38115693	ENSG00000075407.18|ZNF37A|pc|chr10:38115194:38115693:+	0	+
#Split in new
chr10	38117389	38123348	ENSG00000075407.18|ZNF37A|pc|chr10:38117389:38123348:+	0	+
#Split in new
chr10	38117389	38125544	ENSG00000075407.18|ZNF37A|pc|chr10:38117389:38125544:+	0	+
#Deleted in new
chr10	38137336	38144399	ENSG00000272983.1|AL117339.4|lncRNA|chr10:38137336:38144399:+	0	+
#Deleted in new
chr10	38146731	38150293	ENSG00000075407.18|ZNF37A|pc|chr10:38146731:38150293:+	0	+
#Deleted in new
chr10	38159635	38159828	ENSG00000283930.1|AL117339.5|pc|chr10:38159635:38159828:+	0	+
#Partially deleted in new
chr10	38358311	38360098	ENSG00000283930.1|AL117339.5|pc|chr10:38358311:38360098:+	0	+
#Deleted in new
chr10	4051725	4052157	ENSG00000236990.1|AC025822.2|lncRNA|chr10:4051725:4052157:+	0	+
#Deleted in new
chr10	4085196	4085293	ENSG00000236990.1|AC025822.2|lncRNA|chr10:4085196:4085293:+	0	+
#Partially deleted in new
chr10	4087358	4089013	ENSG00000236990.1|AC025822.2|lncRNA|chr10:4087358:4089013:+	0	+
#Deleted in new
chr10	42475542	42475880	ENSG00000185904.11|LINC00839|lncRNA|chr10:42475542:42475880:+	0	+
#Deleted in new
chr10	42475627	42475964	ENSG00000185904.11|LINC00839|lncRNA|chr10:42475627:42475964:+	0	+
#Deleted in new
chr10	42477260	42477442	ENSG00000185904.11|LINC00839|lncRNA|chr10:42477260:42477442:+	0	+
#Deleted in new
chr10	42486978	42487126	ENSG00000185904.11|LINC00839|lncRNA|chr10:42486978:42487126:+	0	+
#Deleted in new
chr10	42492079	42492342	ENSG00000185904.11|LINC00839|lncRNA|chr10:42492079:42492342:+	0	+
#Deleted in new
chr10	42494014	42495336	ENSG00000185904.11|LINC00839|lncRNA|chr10:42494014:42495336:+	0	+
#Deleted in new
chr10	42574184	42574678	ENSG00000196693.14|ZNF33B|pc|chr10:42574184:42574678:-	0	-
#Partially deleted in new
chr10	42581593	42583123	ENSG00000196693.14|ZNF33B|pc|chr10:42581593:42583123:-	0	-
#Deleted in new
chr10	42614281	42614358	ENSG00000196693.14|ZNF33B|pc|chr10:42614281:42614358:-	0	-
#Deleted in new
chr10	42632903	42632912	ENSG00000196693.14|ZNF33B|pc|chr10:42632903:42632912:-	0	-
#Deleted in new
chr10	42636825	42636972	ENSG00000196693.14|ZNF33B|pc|chr10:42636825:42636972:-	0	-
#Deleted in new
chr10	42636919	42636972	ENSG00000196693.14|ZNF33B|pc|chr10:42636919:42636972:-	0	-
#Deleted in new
chr10	42638473	42638521	ENSG00000196693.14|ZNF33B|pc|chr10:42638473:42638521:-	0	-
#Deleted in new
chr10	42638473	42638544	ENSG00000196693.14|ZNF33B|pc|chr10:42638473:42638544:-	0	-
#Deleted in new
chr10	42638473	42638551	ENSG00000196693.14|ZNF33B|pc|chr10:42638473:42638551:-	0	-
#Deleted in new
chr10	42638473	42638553	ENSG00000196693.14|ZNF33B|pc|chr10:42638473:42638553:-	0	-
#Deleted in new
chr10	42638473	42638568	ENSG00000196693.14|ZNF33B|pc|chr10:42638473:42638568:-	0	-
#Deleted in new
chr10	42674196	42674357	ENSG00000233515.1|LINC01518|lncRNA|chr10:42674196:42674357:-	0	-
#Deleted in new
chr10	42691534	42691723	ENSG00000233515.1|LINC01518|lncRNA|chr10:42691534:42691723:-	0	-
#Partially deleted in new
chr10	42830865	42834937	ENSG00000165733.7|BMS1|pc|chr10:42830865:42834937:+	0	+
#Deleted in new
chr10	43136823	43138334	ENSG00000273008.1|AC010864.1|lncRNA|chr10:43136823:43138334:-	0	-
#Partially deleted in new
chr10	43203611	43203819	ENSG00000198915.11|RASGEF1A|pc|chr10:43203611:43203819:-	0	-
#Partially deleted in new
chr10	43206683	43209184	ENSG00000198915.11|RASGEF1A|pc|chr10:43206683:43209184:-	0	-
#Deleted in new
chr10	43323664	43323700	ENSG00000224265.1|AC068707.1|lncRNA|chr10:43323664:43323700:+	0	+
#Deleted in new
chr10	43327370	43327462	ENSG00000224265.1|AC068707.1|lncRNA|chr10:43327370:43327462:+	0	+
#Deleted in new
chr10	43327669	43327932	ENSG00000224265.1|AC068707.1|lncRNA|chr10:43327669:43327932:+	0	+
#Deleted in new
chr10	43420737	43421066	ENSG00000230555.2|AL450326.1|lncRNA|chr10:43420737:43421066:+	0	+
#Partially deleted in new
chr10	43421669	43422100	ENSG00000230555.2|AL450326.1|lncRNA|chr10:43421669:43422100:+	0	+
#Deleted in new
chr10	43436840	43436935	ENSG00000243660.9|ZNF487|pc|chr10:43436840:43436935:+	0	+
#Deleted in new
chr10	43437125	43437262	ENSG00000243660.9|ZNF487|pc|chr10:43437125:43437262:+	0	+
#Deleted in new
chr10	43437147	43437262	ENSG00000243660.9|ZNF487|pc|chr10:43437147:43437262:+	0	+
#Deleted in new
chr10	43437157	43437262	ENSG00000243660.9|ZNF487|pc|chr10:43437157:43437262:+	0	+
#Deleted in new
chr10	43451919	43454664	ENSG00000243660.9|ZNF487|pc|chr10:43451919:43454664:+	0	+
#Deleted in new
chr10	43454064	43454532	ENSG00000243660.9|ZNF487|pc|chr10:43454064:43454532:+	0	+
#Partially deleted in new
chr10	43567898	43568459	ENSG00000196793.13|ZNF239|pc|chr10:43567898:43568459:-	0	-
#Deleted in new
chr10	43573636	43573677	ENSG00000196793.13|ZNF239|pc|chr10:43573636:43573677:-	0	-
#Deleted in new
chr10	43574539	43574584	ENSG00000196793.13|ZNF239|pc|chr10:43574539:43574584:-	0	-
#Deleted in new
chr10	43574539	43574597	ENSG00000196793.13|ZNF239|pc|chr10:43574539:43574597:-	0	-
#Deleted in new
chr10	43574539	43574618	ENSG00000196793.13|ZNF239|pc|chr10:43574539:43574618:-	0	-
#Deleted in new
chr10	43606406	43606546	ENSG00000198298.12|ZNF485|pc|chr10:43606406:43606546:+	0	+
#Deleted in new
chr10	43606418	43606541	ENSG00000198298.12|ZNF485|pc|chr10:43606418:43606541:+	0	+
#Deleted in new
chr10	43606418	43606546	ENSG00000198298.12|ZNF485|pc|chr10:43606418:43606546:+	0	+
#Deleted in new
chr10	43606425	43606563	ENSG00000198298.12|ZNF485|pc|chr10:43606425:43606563:+	0	+
#Deleted in new
chr10	43606996	43607074	ENSG00000198298.12|ZNF485|pc|chr10:43606996:43607074:+	0	+
#Deleted in new
chr10	43606996	43607400	ENSG00000198298.12|ZNF485|pc|chr10:43606996:43607400:+	0	+
#Deleted in new
chr10	43628816	43628978	ENSG00000223910.1|ZNF32-AS3|lncRNA|chr10:43628816:43628978:+	0	+
#Deleted in new
chr10	43647111	43647209	ENSG00000230565.1|ZNF32-AS2|lncRNA|chr10:43647111:43647209:+	0	+
#Deleted in new
chr10	43665667	43665793	ENSG00000228426.1|AL645634.1|lncRNA|chr10:43665667:43665793:+	0	+
#Deleted in new
chr10	43666669	43667005	ENSG00000228426.1|AL645634.1|lncRNA|chr10:43666669:43667005:+	0	+
#Deleted in new
chr10	437560	437915	ENSG00000233021.2|AL669841.1|lncRNA|chr10:437560:437915:+	0	+
#Deleted in new
chr10	43777561	43777850	ENSG00000234973.5|AL355989.1|lncRNA|chr10:43777561:43777850:-	0	-
#Deleted in new
chr10	43778581	43778626	ENSG00000234973.5|AL355989.1|lncRNA|chr10:43778581:43778626:-	0	-
#Deleted in new
chr10	43778706	43778825	ENSG00000234973.5|AL355989.1|lncRNA|chr10:43778706:43778825:-	0	-
#Deleted in new
chr10	43861878	43861927	ENSG00000226808.1|LINC00840|lncRNA|chr10:43861878:43861927:+	0	+
#Partially deleted in new
chr10	43867156	43867339	ENSG00000226808.1|LINC00840|lncRNA|chr10:43867156:43867339:+	0	+
#Deleted in new
chr10	43894864	43895433	ENSG00000226808.1|LINC00840|lncRNA|chr10:43894864:43895433:+	0	+
#Deleted in new
chr10	43901364	43901823	ENSG00000236769.1|AL139237.2|lncRNA|chr10:43901364:43901823:-	0	-
#Deleted in new
chr10	43912292	43912326	ENSG00000236769.1|AL139237.2|lncRNA|chr10:43912292:43912326:-	0	-
#Deleted in new
chr10	43912443	43912478	ENSG00000227029.1|AL139237.1|lncRNA|chr10:43912443:43912478:+	0	+
#Deleted in new
chr10	43913758	43914236	ENSG00000227029.1|AL139237.1|lncRNA|chr10:43913758:43914236:+	0	+
#Deleted in new
chr10	43943191	43943281	ENSG00000233395.1|LINC00841|lncRNA|chr10:43943191:43943281:+	0	+
#Partially deleted in new
chr10	43943856	43943991	ENSG00000233395.1|LINC00841|lncRNA|chr10:43943856:43943991:+	0	+
#Partially deleted in new
chr10	4415304	4415535	ENSG00000230096.1|AC022535.1|lncRNA|chr10:4415304:4415535:-	0	-
#Deleted in new
chr10	4423549	4423691	ENSG00000230096.1|AC022535.1|lncRNA|chr10:4423549:4423691:-	0	-
#Partially deleted in new
chr10	44259601	44260145	ENSG00000237590.1|AL137026.2|lncRNA|chr10:44259601:44260145:-	0	-
#Deleted in new
chr10	4426070	4426179	ENSG00000230096.1|AC022535.1|lncRNA|chr10:4426070:4426179:-	0	-
#Deleted in new
chr10	44292083	44292734	ENSG00000229116.2|AL137026.1|lncRNA|chr10:44292083:44292734:-	0	-
#Deleted in new
chr10	44292568	44292933	ENSG00000277288.3|C10orf142|pc|chr10:44292568:44292933:+	0	+
#Deleted in new
chr10	44292594	44292734	ENSG00000229116.2|AL137026.1|lncRNA|chr10:44292594:44292734:-	0	-
#Deleted in new
chr10	44292749	44292933	ENSG00000277288.3|C10orf142|pc|chr10:44292749:44292933:+	0	+
#Deleted in new
chr10	44293271	44293709	ENSG00000229116.2|AL137026.1|lncRNA|chr10:44293271:44293709:-	0	-
#Deleted in new
chr10	44293300	44293489	ENSG00000277288.3|C10orf142|pc|chr10:44293300:44293489:+	0	+
#Deleted in new
chr10	44293303	44293948	ENSG00000277288.3|C10orf142|pc|chr10:44293303:44293948:+	0	+
#Deleted in new
chr10	44293912	44294649	ENSG00000277288.3|C10orf142|pc|chr10:44293912:44294649:+	0	+
#Deleted in new
chr10	44825501	44825581	ENSG00000224812.2|TMEM72-AS1|lncRNA|chr10:44825501:44825581:-	0	-
#Deleted in new
chr10	44826151	44826368	ENSG00000224812.2|TMEM72-AS1|lncRNA|chr10:44826151:44826368:-	0	-
#Deleted in new
chr10	44830999	44831245	ENSG00000224812.2|TMEM72-AS1|lncRNA|chr10:44830999:44831245:-	0	-
#Deleted in new
chr10	44899613	44900525	ENSG00000234504.2|AL353801.2|lncRNA|chr10:44899613:44900525:-	0	-
#Partially deleted in new
chr10	44919922	44920220	ENSG00000234504.2|AL353801.2|lncRNA|chr10:44919922:44920220:-	0	-
#Deleted in new
chr10	44923080	44923226	ENSG00000224812.2|TMEM72-AS1|lncRNA|chr10:44923080:44923226:-	0	-
#Deleted in new
chr10	44937507	44937675	ENSG00000223462.2|AL353801.1|lncRNA|chr10:44937507:44937675:+	0	+
#Split in new
chr10	44970164	44971848	ENSG00000107551.20|RASSF4|pc|chr10:44970164:44971848:+	0	+
#Deleted in new
chr10	44970980	44971675	ENSG00000165507.8|C10orf10|pc|chr10:44970980:44971675:-	0	-
#Deleted in new
chr10	44980891	44980927	ENSG00000107551.20|RASSF4|pc|chr10:44980891:44980927:+	0	+
#Deleted in new
chr10	44997697	45000416	ENSG00000165511.6|C10orf25|lncRNA|chr10:44997697:45000416:-	0	-
#Deleted in new
chr10	45016079	45016168	ENSG00000277757.4|AL358394.3|lncRNA|chr10:45016079:45016168:-	0	-
#Deleted in new
chr10	45016100	45016168	ENSG00000277757.4|AL358394.3|lncRNA|chr10:45016100:45016168:-	0	-
#Deleted in new
chr10	45016104	45016168	ENSG00000277757.4|AL358394.3|lncRNA|chr10:45016104:45016168:-	0	-
#Deleted in new
chr10	45142094	45142154	ENSG00000277757.4|AL358394.3|lncRNA|chr10:45142094:45142154:-	0	-
#Deleted in new
chr10	45146827	45146916	ENSG00000277757.4|AL358394.3|lncRNA|chr10:45146827:45146916:-	0	-
#Deleted in new
chr10	45146827	45146945	ENSG00000277757.4|AL358394.3|lncRNA|chr10:45146827:45146945:-	0	-
#Partially deleted in new
chr10	45149625	45150659	ENSG00000243349.2|AL358394.2|lncRNA|chr10:45149625:45150659:+	0	+
#Deleted in new
chr10	45152837	45152902	ENSG00000243349.2|AL358394.2|lncRNA|chr10:45152837:45152902:+	0	+
#Deleted in new
chr10	45156777	45157182	ENSG00000243349.2|AL358394.2|lncRNA|chr10:45156777:45157182:+	0	+
#Deleted in new
chr10	45164227	45164416	ENSG00000227683.1|AL358394.1|lncRNA|chr10:45164227:45164416:-	0	-
#Deleted in new
chr10	45169434	45169513	ENSG00000243349.2|AL358394.2|lncRNA|chr10:45169434:45169513:+	0	+
#Deleted in new
chr10	45170006	45171389	ENSG00000243349.2|AL358394.2|lncRNA|chr10:45170006:45171389:+	0	+
#Deleted in new
chr10	45181081	45181427	ENSG00000227683.1|AL358394.1|lncRNA|chr10:45181081:45181427:-	0	-
#Deleted in new
chr10	45315523	45315608	ENSG00000256574.7|OR13A1|pc|chr10:45315523:45315608:-	0	-
#Deleted in new
chr10	45428360	45428486	ENSG00000012779.10|ALOX5|pc|chr10:45428360:45428486:+	0	+
#Deleted in new
chr10	45452843	45452940	ENSG00000231964.1|AL731567.1|lncRNA|chr10:45452843:45452940:-	0	-
#Deleted in new
chr10	45453039	45453121	ENSG00000231964.1|AL731567.1|lncRNA|chr10:45453039:45453121:-	0	-
#Deleted in new
chr10	45553111	45553204	ENSG00000165406.15|MARCH8|pc|chr10:45553111:45553204:-	0	-
#Deleted in new
chr10	45640240	45640421	ENSG00000172671.19|ZFAND4|pc|chr10:45640240:45640421:-	0	-
#Partially deleted in new
chr10	45650124	45651625	ENSG00000172671.19|ZFAND4|pc|chr10:45650124:45651625:-	0	-
#Deleted in new
chr10	45672249	45672275	ENSG00000172671.19|ZFAND4|pc|chr10:45672249:45672275:-	0	-
#Deleted in new
chr10	45672249	45672348	ENSG00000172671.19|ZFAND4|pc|chr10:45672249:45672348:-	0	-
#Partially deleted in new
chr10	45672249	45672732	ENSG00000172671.19|ZFAND4|pc|chr10:45672249:45672732:-	0	-
#Partially deleted in new
chr10	45672249	45672752	ENSG00000172671.19|ZFAND4|pc|chr10:45672249:45672752:-	0	-
#Duplicated in new
chr10	45825593	45827390	ENSG00000188234.13|AGAP4|pc|chr10:45825593:45827390:-	0	-
#Duplicated in new
chr10	45825601	45827390	ENSG00000188234.13|AGAP4|pc|chr10:45825601:45827390:-	0	-
#Deleted in new
chr10	45848842	45848912	ENSG00000188234.13|AGAP4|pc|chr10:45848842:45848912:-	0	-
#Deleted in new
chr10	45853654	45853875	ENSG00000188234.13|AGAP4|pc|chr10:45853654:45853875:-	0	-
#Deleted in new
chr10	46009123	46009212	ENSG00000266412.5|NCOA4|pc|chr10:46009123:46009212:-	0	-
#Partially deleted in new
chr10	46027431	46027528	ENSG00000266412.5|NCOA4|pc|chr10:46027431:46027528:-	0	-
#Deleted in new
chr10	46038965	46039071	ENSG00000263639.5|MSMB|pc|chr10:46038965:46039071:-	0	-
#Deleted in new
chr10	46292809	46293100	ENSG00000274209.4|ANTXRL|pc|chr10:46292809:46293100:+	0	+
#Deleted in new
chr10	46308457	46308666	ENSG00000274209.4|ANTXRL|pc|chr10:46308457:46308666:+	0	+
#Deleted in new
chr10	46398661	46398793	ENSG00000264230.7|ANXA8L1|pc|chr10:46398661:46398793:+	0	+
#Deleted in new
chr10	46450047	46450174	ENSG00000264230.7|ANXA8L1|pc|chr10:46450047:46450174:+	0	+
#Deleted in new
chr10	46451112	46453306	ENSG00000264230.7|ANXA8L1|pc|chr10:46451112:46453306:+	0	+
#Deleted in new
chr10	46476477	46476600	ENSG00000264230.7|ANXA8L1|pc|chr10:46476477:46476600:+	0	+
#Deleted in new
chr10	4657600	4657725	ENSG00000231298.6|LINC00704|lncRNA|chr10:4657600:4657725:-	0	-
#Deleted in new
chr10	46590402	46590499	ENSG00000204176.13|SYT15|pc|chr10:46590402:46590499:+	0	+
#Deleted in new
chr10	46593286	46593626	ENSG00000204176.13|SYT15|pc|chr10:46593286:46593626:+	0	+
#Deleted in new
chr10	46593988	46594173	ENSG00000204176.13|SYT15|pc|chr10:46593988:46594173:+	0	+
#Deleted in new
chr10	46601908	46602515	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46601908:46602515:+	0	+
#Deleted in new
chr10	46602064	46602515	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46602064:46602515:+	0	+
#Deleted in new
chr10	46602096	46602515	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46602096:46602515:+	0	+
#Deleted in new
chr10	46602289	46602515	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46602289:46602515:+	0	+
#Deleted in new
chr10	46602354	46602515	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46602354:46602515:+	0	+
#Deleted in new
chr10	46605208	46605641	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46605208:46605641:+	0	+
#Deleted in new
chr10	46607375	46607769	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46607375:46607769:+	0	+
#Deleted in new
chr10	46607726	46607769	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46607726:46607769:+	0	+
#Deleted in new
chr10	46609091	46609122	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46609091:46609122:+	0	+
#Deleted in new
chr10	46609091	46609255	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46609091:46609255:+	0	+
#Deleted in new
chr10	46611908	46611958	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46611908:46611958:+	0	+
#Deleted in new
chr10	46611908	46612005	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46611908:46612005:+	0	+
#Deleted in new
chr10	46611908	46612009	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46611908:46612009:+	0	+
#Deleted in new
chr10	46611908	46612154	ENSG00000229227.8|AL356056.1|lncRNA|chr10:46611908:46612154:+	0	+
#Deleted in new
chr10	46632386	46632455	ENSG00000272430.1|AL356056.3|lncRNA|chr10:46632386:46632455:+	0	+
#Deleted in new
chr10	46633016	46633099	ENSG00000272430.1|AL356056.3|lncRNA|chr10:46633016:46633099:+	0	+
#Deleted in new
chr10	4678048	4678132	ENSG00000231298.6|LINC00704|lncRNA|chr10:4678048:4678132:-	0	-
#Deleted in new
chr10	4678048	4678154	ENSG00000231298.6|LINC00704|lncRNA|chr10:4678048:4678154:-	0	-
#Deleted in new
chr10	46920900	46921205	ENSG00000204179.10|PTPN20|pc|chr10:46920900:46921205:+	0	+
#Deleted in new
chr10	46925997	46926127	ENSG00000204179.10|PTPN20|pc|chr10:46925997:46926127:+	0	+
#Deleted in new
chr10	46947840	46947955	ENSG00000204179.10|PTPN20|pc|chr10:46947840:46947955:+	0	+
#Deleted in new
chr10	46955095	46955203	ENSG00000204179.10|PTPN20|pc|chr10:46955095:46955203:+	0	+
#Partially deleted in new
chr10	47490286	47490407	ENSG00000189090.7|FAM25G|pc|chr10:47490286:47490407:-	0	-
#Deleted in new
chr10	47496211	47496298	ENSG00000224919.1|AL591684.1|lncRNA|chr10:47496211:47496298:+	0	+
#Duplicated in new
chr10	47501853	47503543	ENSG00000204172.12|AGAP9|pc|chr10:47501853:47503543:-	0	-
#Partially deleted in new
chr10	47553328	47553483	ENSG00000254929.6|AL591684.2|lncRNA|chr10:47553328:47553483:-	0	-
#Deleted in new
chr10	47588680	47589508	ENSG00000264404.2|BX547991.1|lncRNA|chr10:47588680:47589508:-	0	-
#Deleted in new
chr10	47589177	47589508	ENSG00000264404.2|BX547991.1|lncRNA|chr10:47589177:47589508:-	0	-
#Deleted in new
chr10	47590138	47590319	ENSG00000264404.2|BX547991.1|lncRNA|chr10:47590138:47590319:-	0	-
#Deleted in new
chr10	47590165	47590330	ENSG00000264404.2|BX547991.1|lncRNA|chr10:47590165:47590330:-	0	-
#Deleted in new
chr10	4786628	4786760	ENSG00000165568.17|AKR1E2|pc|chr10:4786628:4786760:+	0	+
#Deleted in new
chr10	4786708	4786760	ENSG00000165568.17|AKR1E2|pc|chr10:4786708:4786760:+	0	+
#Deleted in new
chr10	47908063	47908186	ENSG00000276850.4|AC245041.2|lncRNA|chr10:47908063:47908186:-	0	-
#Partially deleted in new
chr10	47934344	47934587	ENSG00000276850.4|AC245041.2|lncRNA|chr10:47934344:47934587:-	0	-
#Partially deleted in new
chr10	47934347	47934587	ENSG00000276850.4|AC245041.2|lncRNA|chr10:47934347:47934587:-	0	-
#Deleted in new
chr10	47956025	47956164	ENSG00000276850.4|AC245041.2|lncRNA|chr10:47956025:47956164:-	0	-
#Deleted in new
chr10	47970042	47970497	ENSG00000273760.1|AC245041.1|lncRNA|chr10:47970042:47970497:-	0	-
#Deleted in new
chr10	48158892	48159238	ENSG00000170324.20|FRMPD2|pc|chr10:48158892:48159238:-	0	-
#Deleted in new
chr10	48178817	48178890	ENSG00000170324.20|FRMPD2|pc|chr10:48178817:48178890:-	0	-
#Deleted in new
chr10	48199667	48199846	ENSG00000170324.20|FRMPD2|pc|chr10:48199667:48199846:-	0	-
#Deleted in new
chr10	48325896	48325965	ENSG00000107643.15|MAPK8|pc|chr10:48325896:48325965:+	0	+
#Deleted in new
chr10	4845777	4845811	ENSG00000165568.17|AKR1E2|pc|chr10:4845777:4845811:+	0	+
#Deleted in new
chr10	4845777	4846199	ENSG00000165568.17|AKR1E2|pc|chr10:4845777:4846199:+	0	+
#Deleted in new
chr10	48510524	48510939	ENSG00000248682.1|ARHGAP22-IT1|lncRNA|chr10:48510524:48510939:-	0	-
#Deleted in new
chr10	48511534	48511589	ENSG00000248682.1|ARHGAP22-IT1|lncRNA|chr10:48511534:48511589:-	0	-
#Deleted in new
chr10	48532483	48532955	ENSG00000128805.14|ARHGAP22|pc|chr10:48532483:48532955:-	0	-
#Deleted in new
chr10	48574701	48575220	ENSG00000128805.14|ARHGAP22|pc|chr10:48574701:48575220:-	0	-
#Deleted in new
chr10	48624003	48624432	ENSG00000251413.1|AC068898.2|lncRNA|chr10:48624003:48624432:-	0	-
#Deleted in new
chr10	48624925	48625093	ENSG00000251413.1|AC068898.2|lncRNA|chr10:48624925:48625093:-	0	-
#Deleted in new
chr10	48664198	48664412	ENSG00000236800.1|AC068898.1|lncRNA|chr10:48664198:48664412:-	0	-
#Deleted in new
chr10	48672303	48672424	ENSG00000236800.1|AC068898.1|lncRNA|chr10:48672303:48672424:-	0	-
#Deleted in new
chr10	48802737	48802786	ENSG00000128815.19|WDFY4|pc|chr10:48802737:48802786:+	0	+
#Deleted in new
chr10	48878021	48878126	ENSG00000228403.1|AC035139.1|lncRNA|chr10:48878021:48878126:+	0	+
#Deleted in new
chr10	48878481	48878649	ENSG00000228403.1|AC035139.1|lncRNA|chr10:48878481:48878649:+	0	+
#Partially deleted in new
chr10	48966525	48969248	ENSG00000128815.19|WDFY4|pc|chr10:48966525:48969248:+	0	+
#Deleted in new
chr10	48992409	48993046	ENSG00000233665.8|AC060234.2|lncRNA|chr10:48992409:48993046:-	0	-
#Deleted in new
chr10	49102171	49103860	ENSG00000165633.12|VSTM4|pc|chr10:49102171:49103860:-	0	-
#Deleted in new
chr10	49121838	49122276	ENSG00000234736.5|FAM170B-AS1|lncRNA|chr10:49121838:49122276:+	0	+
#Deleted in new
chr10	49121843	49122276	ENSG00000234736.5|FAM170B-AS1|lncRNA|chr10:49121843:49122276:+	0	+
#Deleted in new
chr10	49122085	49122276	ENSG00000234736.5|FAM170B-AS1|lncRNA|chr10:49122085:49122276:+	0	+
#Deleted in new
chr10	49141252	49141330	ENSG00000234736.5|FAM170B-AS1|lncRNA|chr10:49141252:49141330:+	0	+
#Deleted in new
chr10	49141252	49141367	ENSG00000234736.5|FAM170B-AS1|lncRNA|chr10:49141252:49141367:+	0	+
#Deleted in new
chr10	49142929	49143088	ENSG00000234736.5|FAM170B-AS1|lncRNA|chr10:49142929:49143088:+	0	+
#Deleted in new
chr10	49178187	49178401	ENSG00000204161.13|C10orf128|pc|chr10:49178187:49178401:-	0	-
#Deleted in new
chr10	49407	49521	ENSG00000261456.5|TUBB8|pc|chr10:49407:49521:-	0	-
#Deleted in new
chr10	49407	50233	ENSG00000261456.5|TUBB8|pc|chr10:49407:50233:-	0	-
#Deleted in new
chr10	49419276	49419510	ENSG00000235939.1|AL138760.1|lncRNA|chr10:49419276:49419510:+	0	+
#Partially deleted in new
chr10	49502037	49502122	ENSG00000225830.12|ERCC6|pc|chr10:49502037:49502122:-	0	-
#Deleted in new
chr10	49539431	49539538	ENSG00000225830.12|ERCC6|pc|chr10:49539431:49539538:-	0	-
#Deleted in new
chr10	49637399	49637654	ENSG00000070748.18|CHAT|pc|chr10:49637399:49637654:+	0	+
#Deleted in new
chr10	49637528	49637654	ENSG00000070748.18|CHAT|pc|chr10:49637528:49637654:+	0	+
#Partially deleted in new
chr10	4966926	4968386	ENSG00000187134.13|AKR1C1|pc|chr10:4966926:4968386:+	0	+
#Deleted in new
chr10	4969674	4969941	ENSG00000187134.13|AKR1C1|pc|chr10:4969674:4969941:+	0	+
#Deleted in new
chr10	49708360	49709966	ENSG00000178645.12|C10orf53|pc|chr10:49708360:49709966:+	0	+
#Partially deleted in new
chr10	49708360	49710261	ENSG00000178645.12|C10orf53|pc|chr10:49708360:49710261:+	0	+
#Partially deleted in new
chr10	49710006	49710261	ENSG00000178645.12|C10orf53|pc|chr10:49710006:49710261:+	0	+
#Partially deleted in new
chr10	49737946	49739499	ENSG00000197444.9|OGDHL|pc|chr10:49737946:49739499:-	0	-
#Split in new
chr10	4977699	4983283	ENSG00000187134.13|AKR1C1|pc|chr10:4977699:4983283:+	0	+
#Split in new
chr10	4987399	4990038	ENSG00000151632.17|AKR1C2|pc|chr10:4987399:4990038:-	0	-
#Deleted in new
chr10	49943234	49943358	ENSG00000204152.10|TIMM23B|pc|chr10:49943234:49943358:+	0	+
#Deleted in new
chr10	49970041	49970458	ENSG00000204152.10|TIMM23B|pc|chr10:49970041:49970458:+	0	+
#Deleted in new
chr10	49970166	49970203	ENSG00000227345.8|PARG|pc|chr10:49970166:49970203:-	0	-
#Deleted in new
chr10	4997239	4997374	ENSG00000224251.6|AL391427.1|lncRNA|chr10:4997239:4997374:+	0	+
#Deleted in new
chr10	4997239	4997380	ENSG00000224251.6|AL391427.1|lncRNA|chr10:4997239:4997380:+	0	+
#Deleted in new
chr10	49981188	49981281	ENSG00000178440.5|LINC00843|lncRNA|chr10:49981188:49981281:+	0	+
#Deleted in new
chr10	49981188	49981370	ENSG00000178440.5|LINC00843|lncRNA|chr10:49981188:49981370:+	0	+
#Deleted in new
chr10	49981904	49982053	ENSG00000178440.5|LINC00843|lncRNA|chr10:49981904:49982053:+	0	+
#Deleted in new
chr10	49982189	49982412	ENSG00000204149.10|AGAP6|pc|chr10:49982189:49982412:+	0	+
#Deleted in new
chr10	49987164	49987234	ENSG00000204149.10|AGAP6|pc|chr10:49987164:49987234:+	0	+
#Partially deleted in new
chr10	4999199	5000666	ENSG00000151632.17|AKR1C2|pc|chr10:4999199:5000666:-	0	-
#Deleted in new
chr10	4999910	5000460	ENSG00000151632.17|AKR1C2|pc|chr10:4999910:5000460:-	0	-
#Deleted in new
chr10	5000302	5000460	ENSG00000151632.17|AKR1C2|pc|chr10:5000302:5000460:-	0	-
#Duplicated in new
chr10	50008710	50010425	ENSG00000204149.10|AGAP6|pc|chr10:50008710:50010425:+	0	+
#Duplicated in new
chr10	50008710	50010497	ENSG00000204149.10|AGAP6|pc|chr10:50008710:50010497:+	0	+
#Duplicated in new
chr10	50008710	50010499	ENSG00000204149.10|AGAP6|pc|chr10:50008710:50010499:+	0	+
#Deleted in new
chr10	5005994	5006052	ENSG00000151632.17|AKR1C2|pc|chr10:5005994:5006052:-	0	-
#Deleted in new
chr10	5006461	5006592	ENSG00000151632.17|AKR1C2|pc|chr10:5006461:5006592:-	0	-
#Deleted in new
chr10	5007406	5007506	ENSG00000151632.17|AKR1C2|pc|chr10:5007406:5007506:-	0	-
#Deleted in new
chr10	50078125	50078152	ENSG00000099290.15|WASHC2A|pc|chr10:50078125:50078152:+	0	+
#Deleted in new
chr10	5010343	5010653	ENSG00000151632.17|AKR1C2|pc|chr10:5010343:5010653:-	0	-
#Deleted in new
chr10	5010462	5010653	ENSG00000151632.17|AKR1C2|pc|chr10:5010462:5010653:-	0	-
#Deleted in new
chr10	5014902	5015048	ENSG00000151632.17|AKR1C2|pc|chr10:5014902:5015048:-	0	-
#Deleted in new
chr10	5014902	5015234	ENSG00000151632.17|AKR1C2|pc|chr10:5014902:5015234:-	0	-
#Deleted in new
chr10	5015836	5015892	ENSG00000151632.17|AKR1C2|pc|chr10:5015836:5015892:-	0	-
#Deleted in new
chr10	5017899	5017934	ENSG00000151632.17|AKR1C2|pc|chr10:5017899:5017934:-	0	-
#Deleted in new
chr10	5017899	5017955	ENSG00000151632.17|AKR1C2|pc|chr10:5017899:5017955:-	0	-
#Deleted in new
chr10	5017899	5018031	ENSG00000151632.17|AKR1C2|pc|chr10:5017899:5018031:-	0	-
#Partially deleted in new
chr10	50334537	50336123	ENSG00000279863.1|AC069547.1|lncRNA|chr10:50334537:50336123:+	0	+
#Deleted in new
chr10	5035353	5035616	ENSG00000196139.13|AKR1C3|pc|chr10:5035353:5035616:+	0	+
#Deleted in new
chr10	5035356	5035616	ENSG00000196139.13|AKR1C3|pc|chr10:5035356:5035616:+	0	+
#Deleted in new
chr10	5035357	5035616	ENSG00000196139.13|AKR1C3|pc|chr10:5035357:5035616:+	0	+
#Deleted in new
chr10	50459940	50460152	ENSG00000198964.13|SGMS1|pc|chr10:50459940:50460152:-	0	-
#Deleted in new
chr10	50629030	50629178	ENSG00000226200.6|SGMS1-AS1|lncRNA|chr10:50629030:50629178:+	0	+
#Split in new
chr10	50629576	50641451	ENSG00000226200.6|SGMS1-AS1|lncRNA|chr10:50629576:50641451:+	0	+
#Deleted in new
chr10	50739317	50740002	ENSG00000204147.9|ASAH2B|pc|chr10:50739317:50740002:+	0	+
#Deleted in new
chr10	50739947	50740002	ENSG00000204147.9|ASAH2B|pc|chr10:50739947:50740002:+	0	+
#Deleted in new
chr10	50739951	50739983	ENSG00000204147.9|ASAH2B|pc|chr10:50739951:50739983:+	0	+
#Deleted in new
chr10	5077637	5077977	ENSG00000196139.13|AKR1C3|pc|chr10:5077637:5077977:+	0	+
#Deleted in new
chr10	5077869	5077977	ENSG00000196139.13|AKR1C3|pc|chr10:5077869:5077977:+	0	+
#Deleted in new
chr10	5077899	5077977	ENSG00000196139.13|AKR1C3|pc|chr10:5077899:5077977:+	0	+
#Deleted in new
chr10	5080745	5080901	ENSG00000196139.13|AKR1C3|pc|chr10:5080745:5080901:+	0	+
#Deleted in new
chr10	5081681	5081885	ENSG00000196139.13|AKR1C3|pc|chr10:5081681:5081885:+	0	+
#Split in new
chr10	5093792	5094528	ENSG00000196139.13|AKR1C3|pc|chr10:5093792:5094528:+	0	+
#Duplicated in new
chr10	5099326	5099893	ENSG00000196139.13|AKR1C3|pc|chr10:5099326:5099893:+	0	+
#Deleted in new
chr10	51062578	51062930	ENSG00000223502.1|AL731537.1|lncRNA|chr10:51062578:51062930:-	0	-
#Deleted in new
chr10	5195461	5195575	ENSG00000198610.10|AKR1C4|pc|chr10:5195461:5195575:+	0	+
#Deleted in new
chr10	5195462	5195575	ENSG00000198610.10|AKR1C4|pc|chr10:5195462:5195575:+	0	+
#Deleted in new
chr10	5196228	5196320	ENSG00000198610.10|AKR1C4|pc|chr10:5196228:5196320:+	0	+
#Deleted in new
chr10	52046776	52046926	ENSG00000185532.15|PRKG1|pc|chr10:52046776:52046926:+	0	+
#Deleted in new
chr10	52081596	52081657	ENSG00000185532.15|PRKG1|pc|chr10:52081596:52081657:+	0	+
#Deleted in new
chr10	52242106	52242241	ENSG00000236671.7|PRKG1-AS1|lncRNA|chr10:52242106:52242241:-	0	-
#Deleted in new
chr10	52253370	52253440	ENSG00000236671.7|PRKG1-AS1|lncRNA|chr10:52253370:52253440:-	0	-
#Deleted in new
chr10	52300802	52300838	ENSG00000236671.7|PRKG1-AS1|lncRNA|chr10:52300802:52300838:-	0	-
#Deleted in new
chr10	52301260	52301302	ENSG00000236671.7|PRKG1-AS1|lncRNA|chr10:52301260:52301302:-	0	-
#Deleted in new
chr10	52301260	52301400	ENSG00000236671.7|PRKG1-AS1|lncRNA|chr10:52301260:52301400:-	0	-
#Deleted in new
chr10	52304228	52304302	ENSG00000236671.7|PRKG1-AS1|lncRNA|chr10:52304228:52304302:-	0	-
#Deleted in new
chr10	52454585	52454749	ENSG00000231131.6|LINC01468|lncRNA|chr10:52454585:52454749:-	0	-
#Deleted in new
chr10	52455105	52455272	ENSG00000231131.6|LINC01468|lncRNA|chr10:52455105:52455272:-	0	-
#Deleted in new
chr10	52556701	52557141	ENSG00000228651.1|AC074327.1|lncRNA|chr10:52556701:52557141:-	0	-
#Deleted in new
chr10	52556982	52557141	ENSG00000228651.1|AC074327.1|lncRNA|chr10:52556982:52557141:-	0	-
#Deleted in new
chr10	52561005	52561105	ENSG00000228651.1|AC074327.1|lncRNA|chr10:52561005:52561105:-	0	-
#Deleted in new
chr10	52561005	52561115	ENSG00000228651.1|AC074327.1|lncRNA|chr10:52561005:52561115:-	0	-
#Deleted in new
chr10	5262964	5263408	ENSG00000231039.2|AL355303.1|lncRNA|chr10:5262964:5263408:+	0	+
#Deleted in new
chr10	5266032	5266685	ENSG00000224034.1|LINC02561|lncRNA|chr10:5266032:5266685:-	0	-
#Deleted in new
chr10	5271197	5271236	ENSG00000224034.1|LINC02561|lncRNA|chr10:5271197:5271236:-	0	-
#Deleted in new
chr10	52755309	52755409	ENSG00000228651.1|AC074327.1|lncRNA|chr10:52755309:52755409:-	0	-
#Deleted in new
chr10	52973487	52973690	ENSG00000227121.1|AC073174.1|lncRNA|chr10:52973487:52973690:-	0	-
#Deleted in new
chr10	52974664	52974800	ENSG00000227121.1|AC073174.1|lncRNA|chr10:52974664:52974800:-	0	-
#Deleted in new
chr10	52975739	52975815	ENSG00000227121.1|AC073174.1|lncRNA|chr10:52975739:52975815:-	0	-
#Deleted in new
chr10	53291071	53291594	ENSG00000226296.1|AC036101.1|lncRNA|chr10:53291071:53291594:-	0	-
#Deleted in new
chr10	53310991	53311065	ENSG00000226296.1|AC036101.1|lncRNA|chr10:53310991:53311065:-	0	-
#Deleted in new
chr10	5346650	5347277	ENSG00000280450.1|AL683826.1|lncRNA|chr10:5346650:5347277:+	0	+
#Deleted in new
chr10	53905192	53905242	ENSG00000150275.17|PCDH15|pc|chr10:53905192:53905242:-	0	-
#Partially deleted in new
chr10	54605691	54606985	ENSG00000234173.1|AL353784.1|lncRNA|chr10:54605691:54606985:+	0	+
#Deleted in new
chr10	54619133	54619324	ENSG00000234173.1|AL353784.1|lncRNA|chr10:54619133:54619324:+	0	+
#Deleted in new
chr10	54864673	54864796	ENSG00000236958.1|AC051618.1|lncRNA|chr10:54864673:54864796:-	0	-
#Deleted in new
chr10	5517280	5517512	ENSG00000205488.8|CALML3-AS1|lncRNA|chr10:5517280:5517512:-	0	-
#Deleted in new
chr10	5517368	5517512	ENSG00000205488.8|CALML3-AS1|lncRNA|chr10:5517368:5517512:-	0	-
#Deleted in new
chr10	55247754	55247888	ENSG00000236744.2|AC016822.1|lncRNA|chr10:55247754:55247888:-	0	-
#Deleted in new
chr10	55319598	55319614	ENSG00000150275.17|PCDH15|pc|chr10:55319598:55319614:-	0	-
#Deleted in new
chr10	55366091	55366213	ENSG00000236744.2|AC016822.1|lncRNA|chr10:55366091:55366213:-	0	-
#Deleted in new
chr10	55468326	55468496	ENSG00000223800.1|AL355314.1|lncRNA|chr10:55468326:55468496:+	0	+
#Deleted in new
chr10	55469076	55469222	ENSG00000223800.1|AL355314.1|lncRNA|chr10:55469076:55469222:+	0	+
#Deleted in new
chr10	55506218	55506286	ENSG00000228048.1|AL355314.2|lncRNA|chr10:55506218:55506286:+	0	+
#Deleted in new
chr10	5608474	5608731	ENSG00000231483.1|AL365356.4|lncRNA|chr10:5608474:5608731:-	0	-
#Deleted in new
chr10	5610107	5610167	ENSG00000231483.1|AL365356.4|lncRNA|chr10:5610107:5610167:-	0	-
#Deleted in new
chr10	5610313	5610436	ENSG00000231483.1|AL365356.4|lncRNA|chr10:5610313:5610436:-	0	-
#Partially deleted in new
chr10	5610731	5610793	ENSG00000231483.1|AL365356.4|lncRNA|chr10:5610731:5610793:-	0	-
#Deleted in new
chr10	56357227	56358185	ENSG00000122952.16|ZWINT|pc|chr10:56357227:56358185:-	0	-
#Deleted in new
chr10	56357437	56358185	ENSG00000122952.16|ZWINT|pc|chr10:56357437:56358185:-	0	-
#Partially deleted in new
chr10	56357437	56358459	ENSG00000122952.16|ZWINT|pc|chr10:56357437:56358459:-	0	-
#Partially deleted in new
chr10	56357444	56358459	ENSG00000122952.16|ZWINT|pc|chr10:56357444:56358459:-	0	-
#Deleted in new
chr10	56357478	56358185	ENSG00000122952.16|ZWINT|pc|chr10:56357478:56358185:-	0	-
#Deleted in new
chr10	56357815	56358185	ENSG00000122952.16|ZWINT|pc|chr10:56357815:56358185:-	0	-
#Deleted in new
chr10	56358142	56358185	ENSG00000122952.16|ZWINT|pc|chr10:56358142:56358185:-	0	-
#Deleted in new
chr10	56361195	56361259	ENSG00000122952.16|ZWINT|pc|chr10:56361195:56361259:-	0	-
#Deleted in new
chr10	56361195	56361265	ENSG00000122952.16|ZWINT|pc|chr10:56361195:56361265:-	0	-
#Deleted in new
chr10	56361195	56361266	ENSG00000122952.16|ZWINT|pc|chr10:56361195:56361266:-	0	-
#Deleted in new
chr10	56361195	56361273	ENSG00000122952.16|ZWINT|pc|chr10:56361195:56361273:-	0	-
#Deleted in new
chr10	56361195	56361275	ENSG00000122952.16|ZWINT|pc|chr10:56361195:56361275:-	0	-
#Deleted in new
chr10	5684837	5685175	ENSG00000108021.19|FAM208B|pc|chr10:5684837:5685175:+	0	+
#Deleted in new
chr10	5684941	5685175	ENSG00000108021.19|FAM208B|pc|chr10:5684941:5685175:+	0	+
#Deleted in new
chr10	5684947	5685175	ENSG00000108021.19|FAM208B|pc|chr10:5684947:5685175:+	0	+
#Deleted in new
chr10	5684964	5685175	ENSG00000108021.19|FAM208B|pc|chr10:5684964:5685175:+	0	+
#Deleted in new
chr10	5692815	5692918	ENSG00000108021.19|FAM208B|pc|chr10:5692815:5692918:+	0	+
#Deleted in new
chr10	5699447	5699737	ENSG00000108021.19|FAM208B|pc|chr10:5699447:5699737:+	0	+
#Deleted in new
chr10	5699492	5699737	ENSG00000108021.19|FAM208B|pc|chr10:5699492:5699737:+	0	+
#Deleted in new
chr10	5712173	5712688	ENSG00000226647.2|AL365356.1|lncRNA|chr10:5712173:5712688:-	0	-
#Deleted in new
chr10	5712393	5712539	ENSG00000108021.19|FAM208B|pc|chr10:5712393:5712539:+	0	+
#Deleted in new
chr10	5712419	5712688	ENSG00000226647.2|AL365356.1|lncRNA|chr10:5712419:5712688:-	0	-
#Deleted in new
chr10	5712822	5712872	ENSG00000108021.19|FAM208B|pc|chr10:5712822:5712872:+	0	+
#Deleted in new
chr10	5712822	5712918	ENSG00000108021.19|FAM208B|pc|chr10:5712822:5712918:+	0	+
#Partially deleted in new
chr10	5714134	5714176	ENSG00000108021.19|FAM208B|pc|chr10:5714134:5714176:+	0	+
#Deleted in new
chr10	5717658	5717750	ENSG00000108021.19|FAM208B|pc|chr10:5717658:5717750:+	0	+
#Deleted in new
chr10	5813984	5814045	ENSG00000272764.1|AL596094.1|lncRNA|chr10:5813984:5814045:+	0	+
#Deleted in new
chr10	5814107	5814329	ENSG00000057608.16|GDI2|pc|chr10:5814107:5814329:-	0	-
#Deleted in new
chr10	5814226	5814441	ENSG00000272764.1|AL596094.1|lncRNA|chr10:5814226:5814441:+	0	+
#Deleted in new
chr10	5814540	5814587	ENSG00000057608.16|GDI2|pc|chr10:5814540:5814587:-	0	-
#Partially deleted in new
chr10	58267421	58267934	ENSG00000151151.5|IPMK|pc|chr10:58267421:58267934:-	0	-
#Deleted in new
chr10	58282898	58283082	ENSG00000122873.11|CISD1|pc|chr10:58282898:58283082:+	0	+
#Deleted in new
chr10	58304552	58304819	ENSG00000228527.1|AC016396.1|lncRNA|chr10:58304552:58304819:+	0	+
#Deleted in new
chr10	58305560	58305621	ENSG00000228527.1|AC016396.1|lncRNA|chr10:58305560:58305621:+	0	+
#Deleted in new
chr10	58386649	58386716	ENSG00000108064.10|TFAM|pc|chr10:58386649:58386716:+	0	+
#Deleted in new
chr10	5842066	5842132	ENSG00000057608.16|GDI2|pc|chr10:5842066:5842132:-	0	-
#Partially deleted in new
chr10	5894385	5894511	ENSG00000134452.19|FBXO18|pc|chr10:5894385:5894511:+	0	+
#Deleted in new
chr10	5905217	5905287	ENSG00000134452.19|FBXO18|pc|chr10:5905217:5905287:+	0	+
#Deleted in new
chr10	59206753	59206844	ENSG00000165443.11|PHYHIPL|pc|chr10:59206753:59206844:+	0	+
#Deleted in new
chr10	5924750	5924801	ENSG00000134452.19|FBXO18|pc|chr10:5924750:5924801:+	0	+
#Deleted in new
chr10	5929374	5929866	ENSG00000134452.19|FBXO18|pc|chr10:5929374:5929866:+	0	+
#Partially deleted in new
chr10	59296901	59297258	ENSG00000148541.12|FAM13C|pc|chr10:59296901:59297258:-	0	-
#Partially deleted in new
chr10	59300705	59301247	ENSG00000148541.12|FAM13C|pc|chr10:59300705:59301247:-	0	-
#Deleted in new
chr10	59327624	59327713	ENSG00000148541.12|FAM13C|pc|chr10:59327624:59327713:-	0	-
#Deleted in new
chr10	5943489	5943915	ENSG00000232807.2|AL137186.2|lncRNA|chr10:5943489:5943915:-	0	-
#Deleted in new
chr10	5943503	5943789	ENSG00000232807.2|AL137186.2|lncRNA|chr10:5943503:5943789:-	0	-
#Deleted in new
chr10	5943638	5943789	ENSG00000134470.20|IL15RA|pc|chr10:5943638:5943789:-	0	-
#Deleted in new
chr10	5945654	5945738	ENSG00000232807.2|AL137186.2|lncRNA|chr10:5945654:5945738:-	0	-
#Deleted in new
chr10	5945654	5945749	ENSG00000232807.2|AL137186.2|lncRNA|chr10:5945654:5945749:-	0	-
#Deleted in new
chr10	5945654	5945900	ENSG00000232807.2|AL137186.2|lncRNA|chr10:5945654:5945900:-	0	-
#Deleted in new
chr10	5948891	5949240	ENSG00000134470.20|IL15RA|pc|chr10:5948891:5949240:-	0	-
#Deleted in new
chr10	5950742	5950824	ENSG00000134470.20|IL15RA|pc|chr10:5950742:5950824:-	0	-
#Deleted in new
chr10	5958202	5958351	ENSG00000134470.20|IL15RA|pc|chr10:5958202:5958351:-	0	-
#Deleted in new
chr10	5958240	5958351	ENSG00000134470.20|IL15RA|pc|chr10:5958240:5958351:-	0	-
#Deleted in new
chr10	59589149	59589371	ENSG00000235140.1|AC026391.1|lncRNA|chr10:59589149:59589371:+	0	+
#Deleted in new
chr10	59594951	59595051	ENSG00000235140.1|AC026391.1|lncRNA|chr10:59594951:59595051:+	0	+
#Deleted in new
chr10	59596324	59596421	ENSG00000235140.1|AC026391.1|lncRNA|chr10:59596324:59596421:+	0	+
#Deleted in new
chr10	59611130	59611248	ENSG00000235140.1|AC026391.1|lncRNA|chr10:59611130:59611248:+	0	+
#Deleted in new
chr10	5968593	5968703	ENSG00000134470.20|IL15RA|pc|chr10:5968593:5968703:-	0	-
#Deleted in new
chr10	5968775	5968928	ENSG00000134470.20|IL15RA|pc|chr10:5968775:5968928:-	0	-
#Deleted in new
chr10	59735929	59736002	ENSG00000165449.11|SLC16A9|pc|chr10:59735929:59736002:-	0	-
#Deleted in new
chr10	59738997	59739095	ENSG00000227877.6|MRLN|pc|chr10:59738997:59739095:-	0	-
#Deleted in new
chr10	59738997	59739119	ENSG00000227877.6|MRLN|pc|chr10:59738997:59739119:-	0	-
#Deleted in new
chr10	59738997	59739291	ENSG00000227877.6|MRLN|pc|chr10:59738997:59739291:-	0	-
#Deleted in new
chr10	59738997	59739370	ENSG00000227877.6|MRLN|pc|chr10:59738997:59739370:-	0	-
#Deleted in new
chr10	59738997	59739682	ENSG00000227877.6|MRLN|pc|chr10:59738997:59739682:-	0	-
#Deleted in new
chr10	59744183	59744244	ENSG00000227877.6|MRLN|pc|chr10:59744183:59744244:-	0	-
#Deleted in new
chr10	59744808	59744864	ENSG00000227877.6|MRLN|pc|chr10:59744808:59744864:-	0	-
#Deleted in new
chr10	59755483	59756041	ENSG00000227877.6|MRLN|pc|chr10:59755483:59756041:-	0	-
#Partially deleted in new
chr10	59806443	59807078	ENSG00000108091.10|CCDC6|pc|chr10:59806443:59807078:-	0	-
#Deleted in new
chr10	59955429	59959323	ENSG00000235931.2|LINC01553|lncRNA|chr10:59955429:59959323:-	0	-
#Deleted in new
chr10	59958216	59959968	ENSG00000235931.2|LINC01553|lncRNA|chr10:59958216:59959968:-	0	-
#Deleted in new
chr10	59958284	59958671	ENSG00000235931.2|LINC01553|lncRNA|chr10:59958284:59958671:-	0	-
#Deleted in new
chr10	59959565	59959968	ENSG00000235931.2|LINC01553|lncRNA|chr10:59959565:59959968:-	0	-
#Deleted in new
chr10	59960850	59960882	ENSG00000235931.2|LINC01553|lncRNA|chr10:59960850:59960882:-	0	-
#Deleted in new
chr10	59960850	59960913	ENSG00000235931.2|LINC01553|lncRNA|chr10:59960850:59960913:-	0	-
#Partially deleted in new
chr10	60050667	60050729	ENSG00000232682.2|AL592430.1|lncRNA|chr10:60050667:60050729:+	0	+
#Partially deleted in new
chr10	6036184	6036427	ENSG00000229664.1|AL137186.1|lncRNA|chr10:6036184:6036427:+	0	+
#Deleted in new
chr10	60741481	60741828	ENSG00000254271.1|AC022390.1|lncRNA|chr10:60741481:60741828:+	0	+
#Partially deleted in new
chr10	60778492	60778668	ENSG00000170312.15|CDK1|pc|chr10:60778492:60778668:+	0	+
#Deleted in new
chr10	60778495	60778570	ENSG00000170312.15|CDK1|pc|chr10:60778495:60778570:+	0	+
#Deleted in new
chr10	60783493	60783593	ENSG00000170312.15|CDK1|pc|chr10:60783493:60783593:+	0	+
#Deleted in new
chr10	61001398	61001440	ENSG00000072422.16|RHOBTB1|pc|chr10:61001398:61001440:-	0	-
#Deleted in new
chr10	61016274	61016341	ENSG00000227244.2|LINC00845|lncRNA|chr10:61016274:61016341:+	0	+
#Deleted in new
chr10	61025791	61026420	ENSG00000227244.2|LINC00845|lncRNA|chr10:61025791:61026420:+	0	+
#Partially deleted in new
chr10	6108487	6108742	ENSG00000134453.15|RBM17|pc|chr10:6108487:6108742:+	0	+
#Deleted in new
chr10	61684891	61685388	ENSG00000272592.1|AL451049.1|lncRNA|chr10:61684891:61685388:-	0	-
#Deleted in new
chr10	61782227	61782405	ENSG00000233643.2|AC022398.1|lncRNA|chr10:61782227:61782405:-	0	-
#Deleted in new
chr10	6197611	6197795	ENSG00000213994.3|AL157395.1|lncRNA|chr10:6197611:6197795:-	0	-
#Deleted in new
chr10	62215028	62215091	ENSG00000182010.10|RTKN2|pc|chr10:62215028:62215091:-	0	-
#Deleted in new
chr10	6224505	6224623	ENSG00000170525.19|PFKFB3|pc|chr10:6224505:6224623:+	0	+
#Deleted in new
chr10	6229108	6229180	ENSG00000170525.19|PFKFB3|pc|chr10:6229108:6229180:+	0	+
#Partially deleted in new
chr10	62303499	62304033	ENSG00000234756.1|AC024597.1|lncRNA|chr10:62303499:62304033:+	0	+
#Deleted in new
chr10	62520447	62520597	ENSG00000138311.15|ZNF365|pc|chr10:62520447:62520597:+	0	+
#Deleted in new
chr10	6254177	6254644	ENSG00000170525.19|PFKFB3|pc|chr10:6254177:6254644:+	0	+
#Deleted in new
chr10	62658002	62659272	ENSG00000138311.15|ZNF365|pc|chr10:62658002:62659272:+	0	+
#Deleted in new
chr10	6277686	6277807	ENSG00000215244.2|AL137145.2|lncRNA|chr10:6277686:6277807:+	0	+
#Deleted in new
chr10	62793561	62793974	ENSG00000238280.1|AL133417.1|lncRNA|chr10:62793561:62793974:-	0	-
#Deleted in new
chr10	62794292	62794408	ENSG00000238280.1|AL133417.1|lncRNA|chr10:62794292:62794408:-	0	-
#Deleted in new
chr10	628637	628897	ENSG00000225140.1|AL358216.1|lncRNA|chr10:628637:628897:+	0	+
#Deleted in new
chr10	62919100	62919210	ENSG00000122877.15|EGR2|pc|chr10:62919100:62919210:-	0	-
#Deleted in new
chr10	62919817	62919900	ENSG00000122877.15|EGR2|pc|chr10:62919817:62919900:-	0	-
#Deleted in new
chr10	63123937	63124182	ENSG00000224301.1|AL590502.1|lncRNA|chr10:63123937:63124182:-	0	-
#Deleted in new
chr10	63124724	63124871	ENSG00000224301.1|AL590502.1|lncRNA|chr10:63124724:63124871:-	0	-
#Deleted in new
chr10	63125424	63125537	ENSG00000224301.1|AL590502.1|lncRNA|chr10:63125424:63125537:-	0	-
#Deleted in new
chr10	6330952	6331016	ENSG00000215244.2|AL137145.2|lncRNA|chr10:6330952:6331016:+	0	+
#Deleted in new
chr10	6331210	6331306	ENSG00000215244.2|AL137145.2|lncRNA|chr10:6331210:6331306:+	0	+
#Deleted in new
chr10	6331500	6331603	ENSG00000215244.2|AL137145.2|lncRNA|chr10:6331500:6331603:+	0	+
#Partially deleted in new
chr10	6335256	6335982	ENSG00000215244.2|AL137145.2|lncRNA|chr10:6335256:6335982:+	0	+
#Partially deleted in new
chr10	6350315	6352762	ENSG00000212743.2|AL137145.1|lncRNA|chr10:6350315:6352762:+	0	+
#Deleted in new
chr10	63664663	63664772	ENSG00000228566.1|AC022387.1|lncRNA|chr10:63664663:63664772:+	0	+
#Deleted in new
chr10	63990268	63990568	ENSG00000228566.1|AC022387.1|lncRNA|chr10:63990268:63990568:+	0	+
#Deleted in new
chr10	64901135	64903425	ENSG00000224714.2|AC024600.1|lncRNA|chr10:64901135:64903425:-	0	-
#Deleted in new
chr10	64924236	64924518	ENSG00000224714.2|AC024600.1|lncRNA|chr10:64924236:64924518:-	0	-
#Deleted in new
chr10	65134494	65134674	ENSG00000282906.1|AL513321.2|lncRNA|chr10:65134494:65134674:+	0	+
#Deleted in new
chr10	65138711	65138820	ENSG00000282906.1|AL513321.2|lncRNA|chr10:65138711:65138820:+	0	+
#Deleted in new
chr10	65140379	65141011	ENSG00000282906.1|AL513321.2|lncRNA|chr10:65140379:65141011:+	0	+
#Deleted in new
chr10	65140379	65141185	ENSG00000282906.1|AL513321.2|lncRNA|chr10:65140379:65141185:+	0	+
#Deleted in new
chr10	65313784	65313828	ENSG00000235356.1|AL592466.1|lncRNA|chr10:65313784:65313828:+	0	+
#Deleted in new
chr10	65314002	65314094	ENSG00000235356.1|AL592466.1|lncRNA|chr10:65314002:65314094:+	0	+
#Deleted in new
chr10	65314799	65314970	ENSG00000235356.1|AL592466.1|lncRNA|chr10:65314799:65314970:+	0	+
#Partially deleted in new
chr10	65570337	65570545	ENSG00000228065.10|LINC01515|lncRNA|chr10:65570337:65570545:+	0	+
#Deleted in new
chr10	65570451	65570545	ENSG00000228065.10|LINC01515|lncRNA|chr10:65570451:65570545:+	0	+
#Deleted in new
chr10	65570501	65570759	ENSG00000228065.10|LINC01515|lncRNA|chr10:65570501:65570759:+	0	+
#Deleted in new
chr10	65570512	65570545	ENSG00000228065.10|LINC01515|lncRNA|chr10:65570512:65570545:+	0	+
#Deleted in new
chr10	65570535	65570759	ENSG00000228065.10|LINC01515|lncRNA|chr10:65570535:65570759:+	0	+
#Deleted in new
chr10	65570874	65571579	ENSG00000228065.10|LINC01515|lncRNA|chr10:65570874:65571579:+	0	+
#Deleted in new
chr10	65571424	65571579	ENSG00000228065.10|LINC01515|lncRNA|chr10:65571424:65571579:+	0	+
#Deleted in new
chr10	65572934	65573056	ENSG00000228065.10|LINC01515|lncRNA|chr10:65572934:65573056:+	0	+
#Deleted in new
chr10	65579882	65579948	ENSG00000228065.10|LINC01515|lncRNA|chr10:65579882:65579948:+	0	+
#Deleted in new
chr10	65581611	65581673	ENSG00000228065.10|LINC01515|lncRNA|chr10:65581611:65581673:+	0	+
#Deleted in new
chr10	65585484	65585567	ENSG00000228065.10|LINC01515|lncRNA|chr10:65585484:65585567:+	0	+
#Deleted in new
chr10	65585484	65585775	ENSG00000228065.10|LINC01515|lncRNA|chr10:65585484:65585775:+	0	+
#Deleted in new
chr10	65585484	65585802	ENSG00000228065.10|LINC01515|lncRNA|chr10:65585484:65585802:+	0	+
#Deleted in new
chr10	65585664	65585801	ENSG00000228065.10|LINC01515|lncRNA|chr10:65585664:65585801:+	0	+
#Deleted in new
chr10	65585664	65585802	ENSG00000228065.10|LINC01515|lncRNA|chr10:65585664:65585802:+	0	+
#Deleted in new
chr10	65628012	65628903	ENSG00000228065.10|LINC01515|lncRNA|chr10:65628012:65628903:+	0	+
#Deleted in new
chr10	65632079	65632828	ENSG00000228065.10|LINC01515|lncRNA|chr10:65632079:65632828:+	0	+
#Deleted in new
chr10	65637869	65638413	ENSG00000228065.10|LINC01515|lncRNA|chr10:65637869:65638413:+	0	+
#Partially deleted in new
chr10	65670688	65670871	ENSG00000228065.10|LINC01515|lncRNA|chr10:65670688:65670871:+	0	+
#Deleted in new
chr10	65682189	65683232	ENSG00000228065.10|LINC01515|lncRNA|chr10:65682189:65683232:+	0	+
#Partially deleted in new
chr10	65691700	65692187	ENSG00000228065.10|LINC01515|lncRNA|chr10:65691700:65692187:+	0	+
#Deleted in new
chr10	65698102	65698716	ENSG00000228065.10|LINC01515|lncRNA|chr10:65698102:65698716:+	0	+
#Deleted in new
chr10	65736896	65736999	ENSG00000228065.10|LINC01515|lncRNA|chr10:65736896:65736999:+	0	+
#Deleted in new
chr10	65750827	65751248	ENSG00000228065.10|LINC01515|lncRNA|chr10:65750827:65751248:+	0	+
#Deleted in new
chr10	65766477	65766541	ENSG00000228065.10|LINC01515|lncRNA|chr10:65766477:65766541:+	0	+
#Deleted in new
chr10	65766555	65766623	ENSG00000228065.10|LINC01515|lncRNA|chr10:65766555:65766623:+	0	+
#Deleted in new
chr10	65768392	65768453	ENSG00000228065.10|LINC01515|lncRNA|chr10:65768392:65768453:+	0	+
#Partially deleted in new
chr10	65768392	65768835	ENSG00000228065.10|LINC01515|lncRNA|chr10:65768392:65768835:+	0	+
#Deleted in new
chr10	6582137	6582201	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6582137:6582201:+	0	+
#Deleted in new
chr10	6585557	6585679	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6585557:6585679:+	0	+
#Deleted in new
chr10	6585557	6585712	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6585557:6585712:+	0	+
#Deleted in new
chr10	6585797	6585846	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6585797:6585846:+	0	+
#Deleted in new
chr10	6590949	6591097	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6590949:6591097:+	0	+
#Deleted in new
chr10	6590949	6591105	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6590949:6591105:+	0	+
#Deleted in new
chr10	6590949	6591132	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6590949:6591132:+	0	+
#Deleted in new
chr10	6590949	6591134	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6590949:6591134:+	0	+
#Deleted in new
chr10	6596845	6596894	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6596845:6596894:+	0	+
#Deleted in new
chr10	6607286	6607415	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6607286:6607415:+	0	+
#Deleted in new
chr10	6607320	6607415	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6607320:6607415:+	0	+
#Partially deleted in new
chr10	66084870	66085045	ENSG00000273360.1|AC022017.1|lncRNA|chr10:66084870:66085045:+	0	+
#Deleted in new
chr10	66118252	66118326	ENSG00000273360.1|AC022017.1|lncRNA|chr10:66118252:66118326:+	0	+
#Deleted in new
chr10	6613630	6613689	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6613630:6613689:+	0	+
#Deleted in new
chr10	6613630	6613903	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6613630:6613903:+	0	+
#Deleted in new
chr10	6613933	6613987	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6613933:6613987:+	0	+
#Deleted in new
chr10	6615369	6615637	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6615369:6615637:+	0	+
#Deleted in new
chr10	6615518	6615637	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6615518:6615637:+	0	+
#Deleted in new
chr10	6615762	6615893	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6615762:6615893:+	0	+
#Deleted in new
chr10	6615762	6615901	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6615762:6615901:+	0	+
#Deleted in new
chr10	6615762	6615909	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6615762:6615909:+	0	+
#Deleted in new
chr10	6615762	6615924	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6615762:6615924:+	0	+
#Deleted in new
chr10	6615762	6615950	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6615762:6615950:+	0	+
#Deleted in new
chr10	6615762	6615959	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6615762:6615959:+	0	+
#Deleted in new
chr10	6616005	6616397	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6616005:6616397:+	0	+
#Deleted in new
chr10	6616005	6616452	ENSG00000237943.6|PRKCQ-AS1|lncRNA|chr10:6616005:6616452:+	0	+
#Deleted in new
chr10	6618715	6618776	ENSG00000225948.2|AL158210.1|lncRNA|chr10:6618715:6618776:+	0	+
#Deleted in new
chr10	662025	662118	ENSG00000180525.11|PRR26|pc|chr10:662025:662118:+	0	+
#Deleted in new
chr10	663557	663702	ENSG00000180525.11|PRR26|pc|chr10:663557:663702:+	0	+
#Deleted in new
chr10	67052608	67052700	ENSG00000225299.1|AL139240.1|lncRNA|chr10:67052608:67052700:+	0	+
#Deleted in new
chr10	6774306	6774935	ENSG00000281186.1|LINC00706|lncRNA|chr10:6774306:6774935:-	0	-
#Deleted in new
chr10	6779110	6779180	ENSG00000281186.1|LINC00706|lncRNA|chr10:6779110:6779180:-	0	-
#Deleted in new
chr10	6779597	6779887	ENSG00000238266.1|LINC00707|lncRNA|chr10:6779597:6779887:+	0	+
#Deleted in new
chr10	67816039	67816129	ENSG00000108176.14|DNAJC12|pc|chr10:67816039:67816129:-	0	-
#Deleted in new
chr10	67816039	67816133	ENSG00000108176.14|DNAJC12|pc|chr10:67816039:67816133:-	0	-
#Partially deleted in new
chr10	67964791	67966802	ENSG00000148634.15|HERC4|pc|chr10:67964791:67966802:-	0	-
#Deleted in new
chr10	67996045	67996138	ENSG00000148634.15|HERC4|pc|chr10:67996045:67996138:-	0	-
#Partially deleted in new
chr10	68067688	68070599	ENSG00000148634.15|HERC4|pc|chr10:68067688:68070599:-	0	-
#Deleted in new
chr10	68135458	68135512	ENSG00000138347.15|MYPN|pc|chr10:68135458:68135512:+	0	+
#Partially deleted in new
chr10	68235337	68235433	ENSG00000233590.1|AC016395.1|lncRNA|chr10:68235337:68235433:-	0	-
#Deleted in new
chr10	68237549	68237631	ENSG00000233590.1|AC016395.1|lncRNA|chr10:68237549:68237631:-	0	-
#Deleted in new
chr10	68242319	68242379	ENSG00000233590.1|AC016395.1|lncRNA|chr10:68242319:68242379:-	0	-
#Partially deleted in new
chr10	68282659	68284289	ENSG00000108187.15|PBLD|pc|chr10:68282659:68284289:-	0	-
#Deleted in new
chr10	68283063	68283290	ENSG00000108187.15|PBLD|pc|chr10:68283063:68283290:-	0	-
#Partially deleted in new
chr10	68283063	68284289	ENSG00000108187.15|PBLD|pc|chr10:68283063:68284289:-	0	-
#Partially deleted in new
chr10	68285080	68285410	ENSG00000108187.15|PBLD|pc|chr10:68285080:68285410:-	0	-
#Partially deleted in new
chr10	68287026	68289019	ENSG00000108187.15|PBLD|pc|chr10:68287026:68289019:-	0	-
#Partially deleted in new
chr10	68295946	68296364	ENSG00000108187.15|PBLD|pc|chr10:68295946:68296364:-	0	-
#Deleted in new
chr10	6833642	6833688	ENSG00000238266.1|LINC00707|lncRNA|chr10:6833642:6833688:+	0	+
#Partially deleted in new
chr10	68346006	68346724	ENSG00000204130.12|RUFY2|pc|chr10:68346006:68346724:-	0	-
#Deleted in new
chr10	68477998	68478803	ENSG00000122912.14|SLC25A16|pc|chr10:68477998:68478803:-	0	-
#Partially deleted in new
chr10	68478000	68483588	ENSG00000122912.14|SLC25A16|pc|chr10:68478000:68483588:-	0	-
#Partially deleted in new
chr10	68479790	68480764	ENSG00000122912.14|SLC25A16|pc|chr10:68479790:68480764:-	0	-
#Deleted in new
chr10	68496433	68496512	ENSG00000122912.14|SLC25A16|pc|chr10:68496433:68496512:-	0	-
#Partially deleted in new
chr10	68517083	68517185	ENSG00000122912.14|SLC25A16|pc|chr10:68517083:68517185:-	0	-
#Duplicated in new
chr10	68827623	68827933	ENSG00000165730.14|STOX1|pc|chr10:68827623:68827933:+	0	+
#Deleted in new
chr10	68895241	68895432	ENSG00000165730.14|STOX1|pc|chr10:68895241:68895432:+	0	+
#Deleted in new
chr10	6891456	6891603	ENSG00000234248.1|AL392086.1|lncRNA|chr10:6891456:6891603:-	0	-
#Deleted in new
chr10	6891849	6891957	ENSG00000234248.1|AL392086.1|lncRNA|chr10:6891849:6891957:-	0	-
#Deleted in new
chr10	68956439	68956748	ENSG00000165732.12|DDX21|pc|chr10:68956439:68956748:+	0	+
#Deleted in new
chr10	68989480	68989629	ENSG00000198954.7|KIF1BP|pc|chr10:68989480:68989629:+	0	+
#Deleted in new
chr10	68989716	68989742	ENSG00000198954.7|KIF1BP|pc|chr10:68989716:68989742:+	0	+
#Deleted in new
chr10	68989716	68989859	ENSG00000198954.7|KIF1BP|pc|chr10:68989716:68989859:+	0	+
#Deleted in new
chr10	68995203	68995278	ENSG00000198954.7|KIF1BP|pc|chr10:68995203:68995278:+	0	+
#Deleted in new
chr10	68999714	68999814	ENSG00000198954.7|KIF1BP|pc|chr10:68999714:68999814:+	0	+
#Deleted in new
chr10	69011201	69011300	ENSG00000198954.7|KIF1BP|pc|chr10:69011201:69011300:+	0	+
#Deleted in new
chr10	69015357	69015436	ENSG00000198954.7|KIF1BP|pc|chr10:69015357:69015436:+	0	+
#Deleted in new
chr10	69041563	69042006	ENSG00000198954.7|KIF1BP|pc|chr10:69041563:69042006:+	0	+
#Deleted in new
chr10	69041563	69043544	ENSG00000198954.7|KIF1BP|pc|chr10:69041563:69043544:+	0	+
#Deleted in new
chr10	69042141	69043526	ENSG00000198954.7|KIF1BP|pc|chr10:69042141:69043526:+	0	+
#Deleted in new
chr10	69123511	69123546	ENSG00000122958.14|VPS26A|pc|chr10:69123511:69123546:+	0	+
#Partially deleted in new
chr10	69170033	69170369	ENSG00000122958.14|VPS26A|pc|chr10:69170033:69170369:+	0	+
#Deleted in new
chr10	69182519	69182654	ENSG00000156502.13|SUPV3L1|pc|chr10:69182519:69182654:+	0	+
#Deleted in new
chr10	69187432	69187466	ENSG00000156502.13|SUPV3L1|pc|chr10:69187432:69187466:+	0	+
#Partially deleted in new
chr10	69191654	69193263	ENSG00000156502.13|SUPV3L1|pc|chr10:69191654:69193263:+	0	+
#Deleted in new
chr10	69225821	69225986	ENSG00000229261.1|AL596223.1|lncRNA|chr10:69225821:69225986:-	0	-
#Deleted in new
chr10	69268100	69268148	ENSG00000231748.1|AL596223.2|lncRNA|chr10:69268100:69268148:-	0	-
#Deleted in new
chr10	69295632	69295680	ENSG00000156515.21|HK1|pc|chr10:69295632:69295680:+	0	+
#Partially deleted in new
chr10	69296204	69296326	ENSG00000156515.21|HK1|pc|chr10:69296204:69296326:+	0	+
#Deleted in new
chr10	69684898	69685118	ENSG00000235645.2|AL450311.1|lncRNA|chr10:69684898:69685118:+	0	+
#Deleted in new
chr10	69690600	69690729	ENSG00000235645.2|AL450311.1|lncRNA|chr10:69690600:69690729:+	0	+
#Deleted in new
chr10	69691069	69691145	ENSG00000235645.2|AL450311.1|lncRNA|chr10:69691069:69691145:+	0	+
#Deleted in new
chr10	69994625	69994854	ENSG00000224222.1|AC024601.1|lncRNA|chr10:69994625:69994854:-	0	-
#Deleted in new
chr10	70098222	70099619	ENSG00000042286.14|AIFM2|pc|chr10:70098222:70099619:-	0	-
#Deleted in new
chr10	70132733	70132934	ENSG00000042286.14|AIFM2|pc|chr10:70132733:70132934:-	0	-
#Deleted in new
chr10	70162689	70162759	ENSG00000079332.14|SAR1A|pc|chr10:70162689:70162759:-	0	-
#Deleted in new
chr10	70162689	70163031	ENSG00000079332.14|SAR1A|pc|chr10:70162689:70163031:-	0	-
#Deleted in new
chr10	70166726	70166822	ENSG00000079332.14|SAR1A|pc|chr10:70166726:70166822:-	0	-
#Partially deleted in new
chr10	70167421	70167525	ENSG00000079332.14|SAR1A|pc|chr10:70167421:70167525:-	0	-
#Partially deleted in new
chr10	70210194	70210419	ENSG00000180817.11|PPA1|pc|chr10:70210194:70210419:-	0	-
#Partially deleted in new
chr10	70218444	70218817	ENSG00000180817.11|PPA1|pc|chr10:70218444:70218817:-	0	-
#Deleted in new
chr10	70447923	70447951	ENSG00000156574.9|NODAL|pc|chr10:70447923:70447951:-	0	-
#Deleted in new
chr10	70860392	70860486	ENSG00000166224.16|SGPL1|pc|chr10:70860392:70860486:+	0	+
#Deleted in new
chr10	70887852	70888254	ENSG00000166228.8|PCBD1|pc|chr10:70887852:70888254:-	0	-
#Deleted in new
chr10	70888530	70888784	ENSG00000166228.8|PCBD1|pc|chr10:70888530:70888784:-	0	-
#Deleted in new
chr10	7097151	7097353	ENSG00000223581.1|AL590095.1|lncRNA|chr10:7097151:7097353:+	0	+
#Deleted in new
chr10	7097441	7097675	ENSG00000223581.1|AL590095.1|lncRNA|chr10:7097441:7097675:+	0	+
#Deleted in new
chr10	71319257	71319310	ENSG00000198246.7|SLC29A3|pc|chr10:71319257:71319310:+	0	+
#Deleted in new
chr10	71319281	71319731	ENSG00000198246.7|SLC29A3|pc|chr10:71319281:71319731:+	0	+
#Deleted in new
chr10	71364242	71366374	ENSG00000279406.1|AL359183.1|lncRNA|chr10:71364242:71366374:+	0	+
#Deleted in new
chr10	71734655	71734658	ENSG00000107736.19|CDH23|pc|chr10:71734655:71734658:+	0	+
#Partially deleted in new
chr10	71760481	71760924	ENSG00000107738.19|VSIR|pc|chr10:71760481:71760924:-	0	-
#Deleted in new
chr10	71878355	71878485	ENSG00000230526.1|AC073370.1|lncRNA|chr10:71878355:71878485:+	0	+
#Deleted in new
chr10	71878712	71879107	ENSG00000230526.1|AC073370.1|lncRNA|chr10:71878712:71879107:+	0	+
#Deleted in new
chr10	72053293	72054037	ENSG00000272988.1|AC022392.1|lncRNA|chr10:72053293:72054037:-	0	-
#Deleted in new
chr10	72068730	72068865	ENSG00000107742.12|SPOCK2|pc|chr10:72068730:72068865:-	0	-
#Deleted in new
chr10	72069209	72069251	ENSG00000107742.12|SPOCK2|pc|chr10:72069209:72069251:-	0	-
#Deleted in new
chr10	72102333	72102412	ENSG00000138303.17|ASCC1|pc|chr10:72102333:72102412:-	0	-
#Deleted in new
chr10	72102368	72102412	ENSG00000138303.17|ASCC1|pc|chr10:72102368:72102412:-	0	-
#Deleted in new
chr10	72102849	72102967	ENSG00000138303.17|ASCC1|pc|chr10:72102849:72102967:-	0	-
#Deleted in new
chr10	72198448	72198665	ENSG00000138303.17|ASCC1|pc|chr10:72198448:72198665:-	0	-
#Deleted in new
chr10	72212187	72212285	ENSG00000138303.17|ASCC1|pc|chr10:72212187:72212285:-	0	-
#Deleted in new
chr10	72220053	72220379	ENSG00000166295.8|ANAPC16|pc|chr10:72220053:72220379:+	0	+
#Partially deleted in new
chr10	72467748	72467945	ENSG00000282915.1|AC091769.2|lncRNA|chr10:72467748:72467945:-	0	-
#Deleted in new
chr10	72473022	72473304	ENSG00000282915.1|AC091769.2|lncRNA|chr10:72473022:72473304:-	0	-
#Partially deleted in new
chr10	72477492	72477603	ENSG00000107745.18|MICU1|pc|chr10:72477492:72477603:-	0	-
#Deleted in new
chr10	72531459	72531690	ENSG00000107745.18|MICU1|pc|chr10:72531459:72531690:-	0	-
#Deleted in new
chr10	72760550	72760672	ENSG00000156026.14|MCU|pc|chr10:72760550:72760672:+	0	+
#Deleted in new
chr10	72861678	72861776	ENSG00000156026.14|MCU|pc|chr10:72861678:72861776:+	0	+
#Deleted in new
chr10	73071294	73071357	ENSG00000237768.2|AL731563.2|lncRNA|chr10:73071294:73071357:+	0	+
#Partially deleted in new
chr10	73098043	73099834	ENSG00000272630.1|AL731563.3|lncRNA|chr10:73098043:73099834:-	0	-
#Deleted in new
chr10	73100083	73101297	ENSG00000272630.1|AL731563.3|lncRNA|chr10:73100083:73101297:-	0	-
#Deleted in new
chr10	73114943	73115168	ENSG00000166321.13|NUDT13|pc|chr10:73114943:73115168:+	0	+
#Deleted in new
chr10	73130154	73130459	ENSG00000122882.10|ECD|pc|chr10:73130154:73130459:-	0	-
#Deleted in new
chr10	73141386	73141485	ENSG00000122882.10|ECD|pc|chr10:73141386:73141485:-	0	-
#Deleted in new
chr10	73183361	73183576	ENSG00000213551.4|DNAJC9|pc|chr10:73183361:73183576:-	0	-
#Deleted in new
chr10	73241661	73241760	ENSG00000213551.4|DNAJC9|pc|chr10:73241661:73241760:-	0	-
#Partially deleted in new
chr10	73247009	73248862	ENSG00000213551.4|DNAJC9|pc|chr10:73247009:73248862:-	0	-
#Partially deleted in new
chr10	73247341	73247504	ENSG00000213551.4|DNAJC9|pc|chr10:73247341:73247504:-	0	-
#Deleted in new
chr10	73247359	73247383	ENSG00000236756.4|DNAJC9-AS1|lncRNA|chr10:73247359:73247383:+	0	+
#Deleted in new
chr10	73247808	73248268	ENSG00000213551.4|DNAJC9|pc|chr10:73247808:73248268:-	0	-
#Deleted in new
chr10	73248292	73248450	ENSG00000236756.4|DNAJC9-AS1|lncRNA|chr10:73248292:73248450:+	0	+
#Deleted in new
chr10	73248382	73248450	ENSG00000236756.4|DNAJC9-AS1|lncRNA|chr10:73248382:73248450:+	0	+
#Split in new
chr10	73248842	73250991	ENSG00000182180.13|MRPS16|pc|chr10:73248842:73250991:-	0	-
#Partially deleted in new
chr10	73248937	73249318	ENSG00000182180.13|MRPS16|pc|chr10:73248937:73249318:-	0	-
#Partially deleted in new
chr10	73248963	73249358	ENSG00000236756.4|DNAJC9-AS1|lncRNA|chr10:73248963:73249358:+	0	+
#Deleted in new
chr10	73252790	73253095	ENSG00000227540.1|DNAJC9-AS1|lncRNA|chr10:73252790:73253095:+	0	+
#Deleted in new
chr10	73253031	73253063	ENSG00000227540.1|DNAJC9-AS1|lncRNA|chr10:73253031:73253063:+	0	+
#Deleted in new
chr10	73253168	73253254	ENSG00000227540.1|DNAJC9-AS1|lncRNA|chr10:73253168:73253254:+	0	+
#Deleted in new
chr10	73253190	73253254	ENSG00000227540.1|DNAJC9-AS1|lncRNA|chr10:73253190:73253254:+	0	+
#Partially deleted in new
chr10	73358777	73358854	ENSG00000156042.17|CFAP70|pc|chr10:73358777:73358854:-	0	-
#Partially deleted in new
chr10	73358777	73358859	ENSG00000156042.17|CFAP70|pc|chr10:73358777:73358859:-	0	-
#Partially deleted in new
chr10	73408194	73408407	ENSG00000138279.15|ANXA7|pc|chr10:73408194:73408407:-	0	-
#Deleted in new
chr10	73504537	73504717	ENSG00000221817.9|PPP3CB-AS1|lncRNA|chr10:73504537:73504717:+	0	+
#Deleted in new
chr10	73504542	73504737	ENSG00000221817.9|PPP3CB-AS1|lncRNA|chr10:73504542:73504737:+	0	+
#Deleted in new
chr10	73504804	73504911	ENSG00000221817.9|PPP3CB-AS1|lncRNA|chr10:73504804:73504911:+	0	+
#Deleted in new
chr10	73504849	73504990	ENSG00000166348.18|USP54|pc|chr10:73504849:73504990:-	0	-
#Partially deleted in new
chr10	73504849	73505196	ENSG00000166348.18|USP54|pc|chr10:73504849:73505196:-	0	-
#Deleted in new
chr10	73513209	73513474	ENSG00000221817.9|PPP3CB-AS1|lncRNA|chr10:73513209:73513474:+	0	+
#Deleted in new
chr10	73518743	73518864	ENSG00000221817.9|PPP3CB-AS1|lncRNA|chr10:73518743:73518864:+	0	+
#Deleted in new
chr10	73546533	73546636	ENSG00000166348.18|USP54|pc|chr10:73546533:73546636:-	0	-
#Deleted in new
chr10	73606368	73606468	ENSG00000166348.18|USP54|pc|chr10:73606368:73606468:-	0	-
#Deleted in new
chr10	73611530	73611626	ENSG00000166348.18|USP54|pc|chr10:73611530:73611626:-	0	-
#Deleted in new
chr10	73613944	73614037	ENSG00000166348.18|USP54|pc|chr10:73613944:73614037:-	0	-
#Deleted in new
chr10	73615074	73615187	ENSG00000166348.18|USP54|pc|chr10:73615074:73615187:-	0	-
#Deleted in new
chr10	73667725	73668028	ENSG00000271848.1|AC073389.2|lncRNA|chr10:73667725:73668028:+	0	+
#Deleted in new
chr10	73668274	73668361	ENSG00000271848.1|AC073389.2|lncRNA|chr10:73668274:73668361:+	0	+
#Duplicated in new
chr10	73674284	73676074	ENSG00000172650.13|AGAP5|pc|chr10:73674284:73676074:-	0	-
#Duplicated in new
chr10	73674286	73676074	ENSG00000172650.13|AGAP5|pc|chr10:73674286:73676074:-	0	-
#Duplicated in new
chr10	73674294	73676074	ENSG00000242288.9|AC022400.3|lncRNA|chr10:73674294:73676074:-	0	-
#Duplicated in new
chr10	73674377	73676074	ENSG00000172650.13|AGAP5|pc|chr10:73674377:73676074:-	0	-
#Deleted in new
chr10	73699150	73699588	ENSG00000271816.1|BMS1P4|lncRNA|chr10:73699150:73699588:-	0	-
#Deleted in new
chr10	73703734	73704366	ENSG00000272140.2|AC022400.5|lncRNA|chr10:73703734:73704366:-	0	-
#Deleted in new
chr10	73704896	73705078	ENSG00000272140.2|AC022400.5|lncRNA|chr10:73704896:73705078:-	0	-
#Deleted in new
chr10	73704985	73705078	ENSG00000242288.9|AC022400.3|lncRNA|chr10:73704985:73705078:-	0	-
#Deleted in new
chr10	73704985	73705078	ENSG00000271816.1|BMS1P4|lncRNA|chr10:73704985:73705078:-	0	-
#Deleted in new
chr10	73704985	73705078	ENSG00000272140.2|AC022400.5|lncRNA|chr10:73704985:73705078:-	0	-
#Deleted in new
chr10	73718014	73718165	ENSG00000242288.9|AC022400.3|lncRNA|chr10:73718014:73718165:-	0	-
#Deleted in new
chr10	73718014	73718165	ENSG00000271816.1|BMS1P4|lncRNA|chr10:73718014:73718165:-	0	-
#Deleted in new
chr10	73796320	73796351	ENSG00000214655.10|ZSWIM8|pc|chr10:73796320:73796351:+	0	+
#Deleted in new
chr10	73796320	73796360	ENSG00000214655.10|ZSWIM8|pc|chr10:73796320:73796360:+	0	+
#Partially deleted in new
chr10	73922632	73922777	ENSG00000222047.8|C10orf55|pc|chr10:73922632:73922777:-	0	-
#Deleted in new
chr10	73968	74163	ENSG00000261456.5|TUBB8|pc|chr10:73968:74163:-	0	-
#Partially deleted in new
chr10	73997181	73997221	ENSG00000035403.17|VCL|pc|chr10:73997181:73997221:+	0	+
#Deleted in new
chr10	74016831	74016878	ENSG00000035403.17|VCL|pc|chr10:74016831:74016878:+	0	+
#Deleted in new
chr10	74063685	74063890	ENSG00000035403.17|VCL|pc|chr10:74063685:74063890:+	0	+
#Deleted in new
chr10	74138805	74138931	ENSG00000185009.12|AP3M1|pc|chr10:74138805:74138931:-	0	-
#Deleted in new
chr10	74174415	74174618	ENSG00000156110.13|ADK|pc|chr10:74174415:74174618:+	0	+
#Deleted in new
chr10	744576	744958	ENSG00000231601.1|AL157709.1|lncRNA|chr10:744576:744958:+	0	+
#Deleted in new
chr10	74506080	74506593	ENSG00000232342.7|AC022540.1|lncRNA|chr10:74506080:74506593:-	0	-
#Deleted in new
chr10	74509352	74509509	ENSG00000232342.7|AC022540.1|lncRNA|chr10:74509352:74509509:-	0	-
#Deleted in new
chr10	74509391	74509509	ENSG00000232342.7|AC022540.1|lncRNA|chr10:74509391:74509509:-	0	-
#Deleted in new
chr10	74516722	74516901	ENSG00000232342.7|AC022540.1|lncRNA|chr10:74516722:74516901:-	0	-
#Deleted in new
chr10	74529292	74529318	ENSG00000232342.7|AC022540.1|lncRNA|chr10:74529292:74529318:-	0	-
#Deleted in new
chr10	74529292	74529355	ENSG00000232342.7|AC022540.1|lncRNA|chr10:74529292:74529355:-	0	-
#Deleted in new
chr10	74530506	74530553	ENSG00000232342.7|AC022540.1|lncRNA|chr10:74530506:74530553:-	0	-
#Deleted in new
chr10	7467396	7467526	ENSG00000232591.1|AL139125.1|lncRNA|chr10:7467396:7467526:-	0	-
#Deleted in new
chr10	7469433	7469593	ENSG00000232591.1|AL139125.1|lncRNA|chr10:7469433:7469593:-	0	-
#Deleted in new
chr10	75024142	75024251	ENSG00000227186.1|AC018511.1|lncRNA|chr10:75024142:75024251:-	0	-
#Deleted in new
chr10	75217887	75217991	ENSG00000165637.13|VDAC2|pc|chr10:75217887:75217991:+	0	+
#Deleted in new
chr10	75217887	75218238	ENSG00000165637.13|VDAC2|pc|chr10:75217887:75218238:+	0	+
#Deleted in new
chr10	75217932	75217991	ENSG00000165637.13|VDAC2|pc|chr10:75217932:75217991:+	0	+
#Deleted in new
chr10	75269818	75269991	ENSG00000226051.6|ZNF503-AS1|lncRNA|chr10:75269818:75269991:+	0	+
#Deleted in new
chr10	75273296	75273411	ENSG00000226051.6|ZNF503-AS1|lncRNA|chr10:75273296:75273411:+	0	+
#Deleted in new
chr10	75280057	75280120	ENSG00000270087.5|AC010997.3|lncRNA|chr10:75280057:75280120:-	0	-
#Deleted in new
chr10	75298951	75299074	ENSG00000226051.6|ZNF503-AS1|lncRNA|chr10:75298951:75299074:+	0	+
#Deleted in new
chr10	75350351	75350470	ENSG00000226051.6|ZNF503-AS1|lncRNA|chr10:75350351:75350470:+	0	+
#Deleted in new
chr10	7536337	7536565	ENSG00000230121.1|AL445070.1|lncRNA|chr10:7536337:7536565:+	0	+
#Deleted in new
chr10	75373380	75373500	ENSG00000226051.6|ZNF503-AS1|lncRNA|chr10:75373380:75373500:+	0	+
#Partially deleted in new
chr10	7572771	7573195	ENSG00000123243.14|ITIH5|pc|chr10:7572771:7573195:-	0	-
#Deleted in new
chr10	75742739	75742883	ENSG00000228280.1|AL731568.1|lncRNA|chr10:75742739:75742883:+	0	+
#Partially deleted in new
chr10	7578295	7578704	ENSG00000123243.14|ITIH5|pc|chr10:7578295:7578704:-	0	-
#Deleted in new
chr10	7619580	7619660	ENSG00000123243.14|ITIH5|pc|chr10:7619580:7619660:-	0	-
#Deleted in new
chr10	76535797	76535920	ENSG00000148655.14|LRMDA|pc|chr10:76535797:76535920:+	0	+
#Deleted in new
chr10	76535797	76535987	ENSG00000148655.14|LRMDA|pc|chr10:76535797:76535987:+	0	+
#Deleted in new
chr10	76556386	76556494	ENSG00000148655.14|LRMDA|pc|chr10:76556386:76556494:+	0	+
#Deleted in new
chr10	76888043	76888281	ENSG00000236467.8|KCNMA1-AS1|lncRNA|chr10:76888043:76888281:+	0	+
#Deleted in new
chr10	76888061	76888281	ENSG00000236467.8|KCNMA1-AS1|lncRNA|chr10:76888061:76888281:+	0	+
#Deleted in new
chr10	76888075	76888281	ENSG00000236467.8|KCNMA1-AS1|lncRNA|chr10:76888075:76888281:+	0	+
#Deleted in new
chr10	76888212	76888281	ENSG00000236467.8|KCNMA1-AS1|lncRNA|chr10:76888212:76888281:+	0	+
#Deleted in new
chr10	76901803	76901852	ENSG00000236467.8|KCNMA1-AS1|lncRNA|chr10:76901803:76901852:+	0	+
#Deleted in new
chr10	76901803	76902022	ENSG00000236467.8|KCNMA1-AS1|lncRNA|chr10:76901803:76902022:+	0	+
#Deleted in new
chr10	76901817	76902022	ENSG00000236467.8|KCNMA1-AS1|lncRNA|chr10:76901817:76902022:+	0	+
#Deleted in new
chr10	76904726	76904875	ENSG00000236467.8|KCNMA1-AS1|lncRNA|chr10:76904726:76904875:+	0	+
#Deleted in new
chr10	77309479	77309618	ENSG00000156113.22|KCNMA1|pc|chr10:77309479:77309618:-	0	-
#Deleted in new
chr10	77309479	77309621	ENSG00000156113.22|KCNMA1|pc|chr10:77309479:77309621:-	0	-
#Deleted in new
chr10	77309479	77309643	ENSG00000156113.22|KCNMA1|pc|chr10:77309479:77309643:-	0	-
#Deleted in new
chr10	77355168	77355228	ENSG00000225652.1|KCNMA1-AS3|lncRNA|chr10:77355168:77355228:+	0	+
#Partially deleted in new
chr10	7750961	7756142	ENSG00000151657.11|KIN|pc|chr10:7750961:7756142:-	0	-
#Deleted in new
chr10	7753224	7753602	ENSG00000151657.11|KIN|pc|chr10:7753224:7753602:-	0	-
#Deleted in new
chr10	7753951	7754069	ENSG00000151657.11|KIN|pc|chr10:7753951:7754069:-	0	-
#Deleted in new
chr10	7761232	7761447	ENSG00000151657.11|KIN|pc|chr10:7761232:7761447:-	0	-
#Partially deleted in new
chr10	7766052	7766359	ENSG00000151657.11|KIN|pc|chr10:7766052:7766359:-	0	-
#Deleted in new
chr10	7766335	7766384	ENSG00000151657.11|KIN|pc|chr10:7766335:7766384:-	0	-
#Deleted in new
chr10	77782865	77783329	ENSG00000228748.2|AL450306.1|lncRNA|chr10:77782865:77783329:+	0	+
#Deleted in new
chr10	77783165	77783881	ENSG00000228748.2|AL450306.1|lncRNA|chr10:77783165:77783881:+	0	+
#Deleted in new
chr10	77806104	77806171	ENSG00000151208.16|DLG5|pc|chr10:77806104:77806171:-	0	-
#Partially deleted in new
chr10	7796605	7796895	ENSG00000165629.19|ATP5C1|pc|chr10:7796605:7796895:+	0	+
#Partially deleted in new
chr10	78013085	78013790	ENSG00000148606.12|POLR3A|pc|chr10:78013085:78013790:-	0	-
#Deleted in new
chr10	7801512	7801569	ENSG00000165629.19|ATP5C1|pc|chr10:7801512:7801569:+	0	+
#Partially deleted in new
chr10	78054530	78056812	ENSG00000138326.18|RPS24|pc|chr10:78054530:78056812:+	0	+
#Deleted in new
chr10	78191148	78191232	ENSG00000230417.11|LINC00595|lncRNA|chr10:78191148:78191232:+	0	+
#Deleted in new
chr10	78191870	78191932	ENSG00000230417.11|LINC00595|lncRNA|chr10:78191870:78191932:+	0	+
#Deleted in new
chr10	78210844	78210998	ENSG00000230417.11|LINC00595|lncRNA|chr10:78210844:78210998:+	0	+
#Deleted in new
chr10	78213813	78214015	ENSG00000230417.11|LINC00595|lncRNA|chr10:78213813:78214015:+	0	+
#Deleted in new
chr10	78213813	78214996	ENSG00000230417.11|LINC00595|lncRNA|chr10:78213813:78214996:+	0	+
#Deleted in new
chr10	78238254	78238304	ENSG00000282863.1|AC012560.1|lncRNA|chr10:78238254:78238304:+	0	+
#Partially deleted in new
chr10	78267309	78267486	ENSG00000230417.11|LINC00595|lncRNA|chr10:78267309:78267486:+	0	+
#Partially deleted in new
chr10	78267327	78267486	ENSG00000230417.11|LINC00595|lncRNA|chr10:78267327:78267486:+	0	+
#Partially deleted in new
chr10	78267341	78267486	ENSG00000230417.11|LINC00595|lncRNA|chr10:78267341:78267486:+	0	+
#Partially deleted in new
chr10	78267378	78267486	ENSG00000230417.11|LINC00595|lncRNA|chr10:78267378:78267486:+	0	+
#Partially deleted in new
chr10	78267409	78267486	ENSG00000230417.11|LINC00595|lncRNA|chr10:78267409:78267486:+	0	+
#Partially deleted in new
chr10	78267441	78267486	ENSG00000230417.11|LINC00595|lncRNA|chr10:78267441:78267486:+	0	+
#Deleted in new
chr10	78279398	78279494	ENSG00000230417.11|LINC00595|lncRNA|chr10:78279398:78279494:+	0	+
#Deleted in new
chr10	78352596	78352809	ENSG00000230229.1|AC010163.2|lncRNA|chr10:78352596:78352809:+	0	+
#Deleted in new
chr10	78373919	78374042	ENSG00000230417.11|LINC00595|lncRNA|chr10:78373919:78374042:+	0	+
#Deleted in new
chr10	78396410	78396465	ENSG00000230417.11|LINC00595|lncRNA|chr10:78396410:78396465:+	0	+
#Deleted in new
chr10	78396410	78396552	ENSG00000230417.11|LINC00595|lncRNA|chr10:78396410:78396552:+	0	+
#Deleted in new
chr10	78465993	78466178	ENSG00000282863.1|AC012560.1|lncRNA|chr10:78465993:78466178:+	0	+
#Deleted in new
chr10	78527292	78527338	ENSG00000282863.1|AC012560.1|lncRNA|chr10:78527292:78527338:+	0	+
#Deleted in new
chr10	78527292	78527587	ENSG00000230417.11|LINC00595|lncRNA|chr10:78527292:78527587:+	0	+
#Deleted in new
chr10	78549699	78549783	ENSG00000282952.1|AL583852.1|lncRNA|chr10:78549699:78549783:-	0	-
#Partially deleted in new
chr10	78943327	78944747	ENSG00000224596.7|ZMIZ1-AS1|lncRNA|chr10:78943327:78944747:-	0	-
#Partially deleted in new
chr10	78961253	78962394	ENSG00000224596.7|ZMIZ1-AS1|lncRNA|chr10:78961253:78962394:-	0	-
#Deleted in new
chr10	78961898	78962049	ENSG00000224596.7|ZMIZ1-AS1|lncRNA|chr10:78961898:78962049:-	0	-
#Deleted in new
chr10	78962823	78962886	ENSG00000224596.7|ZMIZ1-AS1|lncRNA|chr10:78962823:78962886:-	0	-
#Deleted in new
chr10	79050281	79050417	ENSG00000224596.7|ZMIZ1-AS1|lncRNA|chr10:79050281:79050417:-	0	-
#Deleted in new
chr10	79139681	79139777	ENSG00000108175.16|ZMIZ1|pc|chr10:79139681:79139777:+	0	+
#Deleted in new
chr10	79285452	79285621	ENSG00000108175.16|ZMIZ1|pc|chr10:79285452:79285621:+	0	+
#Deleted in new
chr10	79504072	79504210	ENSG00000241317.1|AL133481.3|lncRNA|chr10:79504072:79504210:-	0	-
#Split in new
chr10	79512600	79516440	ENSG00000253626.3|EIF5AL1|pc|chr10:79512600:79516440:+	0	+
#Partially deleted in new
chr10	79559968	79560163	ENSG00000185303.16|SFTPA2|pc|chr10:79559968:79560163:-	0	-
#Partially deleted in new
chr10	79628756	79629056	ENSG00000226676.1|BX248123.1|lncRNA|chr10:79628756:79629056:-	0	-
#Deleted in new
chr10	79631981	79632186	ENSG00000226676.1|BX248123.1|lncRNA|chr10:79631981:79632186:-	0	-
#Deleted in new
chr10	79631981	79632188	ENSG00000226676.1|BX248123.1|lncRNA|chr10:79631981:79632188:-	0	-
#Deleted in new
chr10	79660890	79660994	ENSG00000244733.5|AL132656.2|lncRNA|chr10:79660890:79660994:+	0	+
#Deleted in new
chr10	79663087	79663234	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79663087:79663234:-	0	-
#Deleted in new
chr10	79666784	79666858	ENSG00000244733.5|AL132656.2|lncRNA|chr10:79666784:79666858:+	0	+
#Deleted in new
chr10	79667996	79668452	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79667996:79668452:-	0	-
#Deleted in new
chr10	79668385	79668452	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79668385:79668452:-	0	-
#Deleted in new
chr10	79669487	79669574	ENSG00000244733.5|AL132656.2|lncRNA|chr10:79669487:79669574:+	0	+
#Deleted in new
chr10	79671090	79671133	ENSG00000244733.5|AL132656.2|lncRNA|chr10:79671090:79671133:+	0	+
#Partially deleted in new
chr10	79716444	79723654	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79716444:79723654:-	0	-
#Deleted in new
chr10	79723914	79724012	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79723914:79724012:-	0	-
#Partially deleted in new
chr10	79762709	79766324	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79762709:79766324:-	0	-
#Deleted in new
chr10	79797833	79798027	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79797833:79798027:-	0	-
#Deleted in new
chr10	79804056	79804527	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79804056:79804527:-	0	-
#Deleted in new
chr10	79804484	79804527	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79804484:79804527:-	0	-
#Deleted in new
chr10	79806038	79806122	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79806038:79806122:-	0	-
#Deleted in new
chr10	79808758	79808832	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79808758:79808832:-	0	-
#Deleted in new
chr10	79808762	79808963	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79808762:79808963:-	0	-
#Deleted in new
chr10	79814612	79814644	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79814612:79814644:-	0	-
#Deleted in new
chr10	79814612	79814654	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79814612:79814654:-	0	-
#Deleted in new
chr10	79814612	79814716	ENSG00000225484.6|NUTM2B-AS1|lncRNA|chr10:79814612:79814716:-	0	-
#Deleted in new
chr10	79931710	79931818	ENSG00000283913.1|AL512662.2|lncRNA|chr10:79931710:79931818:+	0	+
#Deleted in new
chr10	79931725	79931818	ENSG00000283913.1|AL512662.2|lncRNA|chr10:79931725:79931818:+	0	+
#Deleted in new
chr10	79950027	79950336	ENSG00000283913.1|AL512662.2|lncRNA|chr10:79950027:79950336:+	0	+
#Deleted in new
chr10	79950027	79951029	ENSG00000283913.1|AL512662.2|lncRNA|chr10:79950027:79951029:+	0	+
#Deleted in new
chr10	79968212	79973213	ENSG00000273372.1|SFTPD-AS1|lncRNA|chr10:79968212:79973213:+	0	+
#Deleted in new
chr10	79970962	79973213	ENSG00000280259.1|AL512662.1|lncRNA|chr10:79970962:79973213:-	0	-
#Split in new
chr10	80046859	80049178	ENSG00000230091.6|TMEM254-AS1|lncRNA|chr10:80046859:80049178:-	0	-
#Deleted in new
chr10	80055915	80056126	ENSG00000230091.6|TMEM254-AS1|lncRNA|chr10:80055915:80056126:-	0	-
#Deleted in new
chr10	80056318	80056405	ENSG00000230091.6|TMEM254-AS1|lncRNA|chr10:80056318:80056405:-	0	-
#Deleted in new
chr10	80060789	80060933	ENSG00000230091.6|TMEM254-AS1|lncRNA|chr10:80060789:80060933:-	0	-
#Deleted in new
chr10	80060815	80060933	ENSG00000230091.6|TMEM254-AS1|lncRNA|chr10:80060815:80060933:-	0	-
#Deleted in new
chr10	80081639	80081734	ENSG00000133678.13|TMEM254|pc|chr10:80081639:80081734:+	0	+
#Deleted in new
chr10	80081702	80081734	ENSG00000133678.13|TMEM254|pc|chr10:80081702:80081734:+	0	+
#Deleted in new
chr10	80081722	80081741	ENSG00000133678.13|TMEM254|pc|chr10:80081722:80081741:+	0	+
#Deleted in new
chr10	80086230	80086258	ENSG00000133678.13|TMEM254|pc|chr10:80086230:80086258:+	0	+
#Deleted in new
chr10	80086230	80086441	ENSG00000133678.13|TMEM254|pc|chr10:80086230:80086441:+	0	+
#Deleted in new
chr10	80090379	80090412	ENSG00000133678.13|TMEM254|pc|chr10:80090379:80090412:+	0	+
#Deleted in new
chr10	80090379	80090431	ENSG00000133678.13|TMEM254|pc|chr10:80090379:80090431:+	0	+
#Deleted in new
chr10	80091410	80091867	ENSG00000279399.1|AL356095.2|lncRNA|chr10:80091410:80091867:-	0	-
#Deleted in new
chr10	80131681	80131831	ENSG00000189129.13|PLAC9|pc|chr10:80131681:80131831:+	0	+
#Partially deleted in new
chr10	80144899	80145359	ENSG00000189129.13|PLAC9|pc|chr10:80144899:80145359:+	0	+
#Partially deleted in new
chr10	80150888	80155912	ENSG00000122359.17|ANXA11|pc|chr10:80150888:80155912:-	0	-
#Deleted in new
chr10	80171612	80171881	ENSG00000122359.17|ANXA11|pc|chr10:80171612:80171881:-	0	-
#Deleted in new
chr10	80176106	80176155	ENSG00000122359.17|ANXA11|pc|chr10:80176106:80176155:-	0	-
#Deleted in new
chr10	80180940	80181136	ENSG00000122359.17|ANXA11|pc|chr10:80180940:80181136:-	0	-
#Deleted in new
chr10	80180940	80181455	ENSG00000122359.17|ANXA11|pc|chr10:80180940:80181455:-	0	-
#Deleted in new
chr10	80181101	80181455	ENSG00000122359.17|ANXA11|pc|chr10:80181101:80181455:-	0	-
#Deleted in new
chr10	80195730	80195832	ENSG00000122359.17|ANXA11|pc|chr10:80195730:80195832:-	0	-
#Deleted in new
chr10	80207709	80208231	ENSG00000237523.1|LINC00857|lncRNA|chr10:80207709:80208231:+	0	+
#Deleted in new
chr10	80208208	80208241	ENSG00000237523.1|LINC00857|lncRNA|chr10:80208208:80208241:+	0	+
#Partially deleted in new
chr10	80218018	80219657	ENSG00000237523.1|LINC00857|lncRNA|chr10:80218018:80219657:+	0	+
#Split in new
chr10	80249709	80254121	ENSG00000279359.1|AL359195.2|lncRNA|chr10:80249709:80254121:+	0	+
#Deleted in new
chr10	80333770	80333858	ENSG00000235858.1|AL359195.1|lncRNA|chr10:80333770:80333858:+	0	+
#Deleted in new
chr10	80334175	80334426	ENSG00000235858.1|AL359195.1|lncRNA|chr10:80334175:80334426:+	0	+
#Deleted in new
chr10	80344744	80344815	ENSG00000133665.12|DYDC2|pc|chr10:80344744:80344815:+	0	+
#Deleted in new
chr10	80344758	80344815	ENSG00000133665.12|DYDC2|pc|chr10:80344758:80344815:+	0	+
#Deleted in new
chr10	80354360	80354458	ENSG00000170788.13|DYDC1|pc|chr10:80354360:80354458:-	0	-
#Deleted in new
chr10	80354360	80354483	ENSG00000170788.13|DYDC1|pc|chr10:80354360:80354483:-	0	-
#Deleted in new
chr10	80357892	80358045	ENSG00000133665.12|DYDC2|pc|chr10:80357892:80358045:+	0	+
#Deleted in new
chr10	80407828	80407956	ENSG00000122378.13|FAM213A|pc|chr10:80407828:80407956:+	0	+
#Deleted in new
chr10	80466440	80466538	ENSG00000108219.14|TSPAN14|pc|chr10:80466440:80466538:+	0	+
#Deleted in new
chr10	80529596	80529831	ENSG00000226659.1|AC021028.1|lncRNA|chr10:80529596:80529831:-	0	-
#Partially deleted in new
chr10	80540818	80540933	ENSG00000178217.13|SH2D4B|pc|chr10:80540818:80540933:+	0	+
#Deleted in new
chr10	80607298	80607500	ENSG00000178217.13|SH2D4B|pc|chr10:80607298:80607500:+	0	+
#Deleted in new
chr10	80653489	80653732	ENSG00000231082.1|AL731544.1|lncRNA|chr10:80653489:80653732:+	0	+
#Deleted in new
chr10	806913	808272	ENSG00000107929.14|LARP4B|pc|chr10:806913:808272:-	0	-
#Partially deleted in new
chr10	817724	820930	ENSG00000107929.14|LARP4B|pc|chr10:817724:820930:-	0	-
#Deleted in new
chr10	82166726	82166826	ENSG00000185737.12|NRG3|pc|chr10:82166726:82166826:+	0	+
#Deleted in new
chr10	82225398	82225525	ENSG00000229458.2|AC010157.1|lncRNA|chr10:82225398:82225525:-	0	-
#Deleted in new
chr10	82230129	82230365	ENSG00000225738.2|NRG3-AS1|lncRNA|chr10:82230129:82230365:-	0	-
#Deleted in new
chr10	82230210	82230365	ENSG00000225738.2|NRG3-AS1|lncRNA|chr10:82230210:82230365:-	0	-
#Partially deleted in new
chr10	8266253	8266349	ENSG00000232170.5|LINC00708|lncRNA|chr10:8266253:8266349:-	0	-
#Deleted in new
chr10	8268198	8268305	ENSG00000232170.5|LINC00708|lncRNA|chr10:8268198:8268305:-	0	-
#Deleted in new
chr10	82859133	82859224	ENSG00000185737.12|NRG3|pc|chr10:82859133:82859224:+	0	+
#Deleted in new
chr10	83912751	83912922	ENSG00000233258.1|AL390786.1|lncRNA|chr10:83912751:83912922:-	0	-
#Partially deleted in new
chr10	8401373	8401430	ENSG00000226990.1|AC025946.1|lncRNA|chr10:8401373:8401430:+	0	+
#Deleted in new
chr10	84219078	84219092	ENSG00000148600.14|CDHR1|pc|chr10:84219078:84219092:+	0	+
#Deleted in new
chr10	84250384	84250927	ENSG00000148604.13|RGR|pc|chr10:84250384:84250927:+	0	+
#Partially deleted in new
chr10	84258507	84259960	ENSG00000148604.13|RGR|pc|chr10:84258507:84259960:+	0	+
#Deleted in new
chr10	84279979	84280065	ENSG00000229404.5|LINC00858|lncRNA|chr10:84279979:84280065:+	0	+
#Deleted in new
chr10	84279990	84280065	ENSG00000229404.5|LINC00858|lncRNA|chr10:84279990:84280065:+	0	+
#Duplicated in new
chr10	84291406	84292137	ENSG00000229404.5|LINC00858|lncRNA|chr10:84291406:84292137:+	0	+
#Deleted in new
chr10	84473031	84473146	ENSG00000107771.15|CCSER2|pc|chr10:84473031:84473146:+	0	+
#Partially deleted in new
chr10	8461065	8461175	ENSG00000226990.1|AC025946.1|lncRNA|chr10:8461065:8461175:+	0	+
#Partially deleted in new
chr10	85195853	85196933	ENSG00000237267.1|LINC01519|lncRNA|chr10:85195853:85196933:-	0	-
#Deleted in new
chr10	85444724	85444930	ENSG00000224504.2|AC025428.2|lncRNA|chr10:85444724:85444930:+	0	+
#Deleted in new
chr10	85461595	85461697	ENSG00000230962.1|LINC01520|lncRNA|chr10:85461595:85461697:+	0	+
#Deleted in new
chr10	85555483	85557436	ENSG00000280134.1|AL731532.2|lncRNA|chr10:85555483:85557436:-	0	-
#Deleted in new
chr10	85579490	85579603	ENSG00000234942.2|GRID1-AS1|lncRNA|chr10:85579490:85579603:+	0	+
#Deleted in new
chr10	86843405	86843510	ENSG00000107779.13|BMPR1A|pc|chr10:86843405:86843510:+	0	+
#Deleted in new
chr10	86929296	86929738	ENSG00000107779.13|BMPR1A|pc|chr10:86929296:86929738:+	0	+
#Deleted in new
chr10	86929299	86929746	ENSG00000107779.13|BMPR1A|pc|chr10:86929299:86929746:+	0	+
#Deleted in new
chr10	86930300	86932825	ENSG00000107779.13|BMPR1A|pc|chr10:86930300:86932825:+	0	+
#Deleted in new
chr10	86948676	86949875	ENSG00000281974.1|AC025268.1|lncRNA|chr10:86948676:86949875:+	0	+
#Deleted in new
chr10	86965344	86967549	ENSG00000272734.1|ADIRF-AS1|lncRNA|chr10:86965344:86967549:-	0	-
#Deleted in new
chr10	86965738	86966103	ENSG00000272734.1|ADIRF-AS1|lncRNA|chr10:86965738:86966103:-	0	-
#Deleted in new
chr10	86965739	86966237	ENSG00000272734.1|ADIRF-AS1|lncRNA|chr10:86965739:86966237:-	0	-
#Deleted in new
chr10	86965740	86966103	ENSG00000272734.1|ADIRF-AS1|lncRNA|chr10:86965740:86966103:-	0	-
#Deleted in new
chr10	86967768	86969374	ENSG00000272734.1|ADIRF-AS1|lncRNA|chr10:86967768:86969374:-	0	-
#Deleted in new
chr10	86968191	86968605	ENSG00000148671.13|ADIRF|pc|chr10:86968191:86968605:+	0	+
#Deleted in new
chr10	86968431	86968605	ENSG00000148671.13|ADIRF|pc|chr10:86968431:86968605:+	0	+
#Deleted in new
chr10	86968489	86968605	ENSG00000148671.13|ADIRF|pc|chr10:86968489:86968605:+	0	+
#Deleted in new
chr10	86969041	86969121	ENSG00000272734.1|ADIRF-AS1|lncRNA|chr10:86969041:86969121:-	0	-
#Deleted in new
chr10	86969041	86969178	ENSG00000272734.1|ADIRF-AS1|lncRNA|chr10:86969041:86969178:-	0	-
#Deleted in new
chr10	86969041	86969312	ENSG00000173269.13|MMRN2|pc|chr10:86969041:86969312:-	0	-
#Deleted in new
chr10	86969041	86969481	ENSG00000173269.13|MMRN2|pc|chr10:86969041:86969481:-	0	-
#Partially deleted in new
chr10	86969262	86971311	ENSG00000272734.1|ADIRF-AS1|lncRNA|chr10:86969262:86971311:-	0	-
#Deleted in new
chr10	86970199	86970262	ENSG00000148671.13|ADIRF|pc|chr10:86970199:86970262:+	0	+
#Deleted in new
chr10	86983139	86983240	ENSG00000271880.1|AGAP11|lncRNA|chr10:86983139:86983240:+	0	+
#Duplicated in new
chr10	87008354	87010126	ENSG00000271880.1|AGAP11|lncRNA|chr10:87008354:87010126:+	0	+
#Duplicated in new
chr10	87008354	87010203	ENSG00000151303.11|AL136982.1|lncRNA|chr10:87008354:87010203:+	0	+
#Deleted in new
chr10	87015695	87015782	ENSG00000229969.1|AL136982.2|lncRNA|chr10:87015695:87015782:-	0	-
#Partially deleted in new
chr10	87113953	87114446	ENSG00000237280.1|AL136982.3|lncRNA|chr10:87113953:87114446:+	0	+
#Deleted in new
chr10	87115328	87115523	ENSG00000237280.1|AL136982.3|lncRNA|chr10:87115328:87115523:+	0	+
#Deleted in new
chr10	87244131	87245855	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87244131:87245855:-	0	-
#Deleted in new
chr10	87246114	87246212	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87246114:87246212:-	0	-
#Partially deleted in new
chr10	87286897	87288495	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87286897:87288495:-	0	-
#Deleted in new
chr10	87307956	87308060	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87307956:87308060:-	0	-
#Deleted in new
chr10	87319855	87320199	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87319855:87320199:-	0	-
#Deleted in new
chr10	87320552	87320743	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87320552:87320743:-	0	-
#Deleted in new
chr10	87326629	87326672	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87326629:87326672:-	0	-
#Deleted in new
chr10	87326629	87326674	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87326629:87326674:-	0	-
#Deleted in new
chr10	87329771	87329843	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87329771:87329843:-	0	-
#Deleted in new
chr10	87330891	87330952	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87330891:87330952:-	0	-
#Deleted in new
chr10	87330891	87331096	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87330891:87331096:-	0	-
#Deleted in new
chr10	87334039	87334814	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87334039:87334814:-	0	-
#Deleted in new
chr10	87336785	87336808	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87336785:87336808:-	0	-
#Deleted in new
chr10	87336785	87336829	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87336785:87336829:-	0	-
#Deleted in new
chr10	87336785	87336874	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87336785:87336874:-	0	-
#Deleted in new
chr10	87336785	87336889	ENSG00000223482.7|NUTM2A-AS1|lncRNA|chr10:87336785:87336889:-	0	-
#Deleted in new
chr10	87344436	87344495	ENSG00000224914.3|LINC00863|lncRNA|chr10:87344436:87344495:+	0	+
#Deleted in new
chr10	87354619	87354897	ENSG00000224914.3|LINC00863|lncRNA|chr10:87354619:87354897:+	0	+
#Deleted in new
chr10	87355090	87355425	ENSG00000224914.3|LINC00863|lncRNA|chr10:87355090:87355425:+	0	+
#Deleted in new
chr10	87355937	87357301	ENSG00000224914.3|LINC00863|lncRNA|chr10:87355937:87357301:+	0	+
#Partially deleted in new
chr10	87355937	87357882	ENSG00000224914.3|LINC00863|lncRNA|chr10:87355937:87357882:+	0	+
#Partially deleted in new
chr10	87367333	87370695	ENSG00000214562.14|NUTM2D|pc|chr10:87367333:87370695:+	0	+
#Deleted in new
chr10	87397022	87397389	ENSG00000228055.2|LINC00864|lncRNA|chr10:87397022:87397389:-	0	-
#Deleted in new
chr10	87397061	87397389	ENSG00000228055.2|LINC00864|lncRNA|chr10:87397061:87397389:-	0	-
#Deleted in new
chr10	87398019	87398200	ENSG00000228055.2|LINC00864|lncRNA|chr10:87398019:87398200:-	0	-
#Deleted in new
chr10	87398046	87398200	ENSG00000228055.2|LINC00864|lncRNA|chr10:87398046:87398200:-	0	-
#Deleted in new
chr10	87424763	87424792	ENSG00000228055.2|LINC00864|lncRNA|chr10:87424763:87424792:-	0	-
#Deleted in new
chr10	87591606	87591743	ENSG00000223761.1|AL138767.2|lncRNA|chr10:87591606:87591743:-	0	-
#Deleted in new
chr10	87605993	87606024	ENSG00000223761.1|AL138767.2|lncRNA|chr10:87605993:87606024:-	0	-
#Deleted in new
chr10	87607984	87608026	ENSG00000225913.2|AL138767.3|lncRNA|chr10:87607984:87608026:+	0	+
#Deleted in new
chr10	87610162	87610474	ENSG00000196566.2|AL138767.1|lncRNA|chr10:87610162:87610474:-	0	-
#Deleted in new
chr10	87611955	87612079	ENSG00000196566.2|AL138767.1|lncRNA|chr10:87611955:87612079:-	0	-
#Deleted in new
chr10	87630189	87630255	ENSG00000225913.2|AL138767.3|lncRNA|chr10:87630189:87630255:+	0	+
#Deleted in new
chr10	87880071	87880110	ENSG00000224745.1|AC063965.1|lncRNA|chr10:87880071:87880110:+	0	+
#Deleted in new
chr10	87880299	87880427	ENSG00000224745.1|AC063965.1|lncRNA|chr10:87880299:87880427:+	0	+
#Partially deleted in new
chr10	88273863	88275032	ENSG00000184719.11|RNLS|pc|chr10:88273863:88275032:-	0	-
#Deleted in new
chr10	88586752	88587392	ENSG00000204022.9|LIPJ|pc|chr10:88586752:88587392:+	0	+
#Deleted in new
chr10	88586761	88586845	ENSG00000204022.9|LIPJ|pc|chr10:88586761:88586845:+	0	+
#Deleted in new
chr10	88587265	88587392	ENSG00000204022.9|LIPJ|pc|chr10:88587265:88587392:+	0	+
#Partially deleted in new
chr10	88591377	88594312	ENSG00000204022.9|LIPJ|pc|chr10:88591377:88594312:+	0	+
#Deleted in new
chr10	88665478	88665559	ENSG00000182333.14|LIPF|pc|chr10:88665478:88665559:+	0	+
#Deleted in new
chr10	88805978	88806005	ENSG00000173239.13|LIPM|pc|chr10:88805978:88806005:+	0	+
#Deleted in new
chr10	88932389	88932959	ENSG00000180139.11|ACTA2-AS1|lncRNA|chr10:88932389:88932959:+	0	+
#Deleted in new
chr10	88932642	88932959	ENSG00000180139.11|ACTA2-AS1|lncRNA|chr10:88932642:88932959:+	0	+
#Deleted in new
chr10	88933640	88933886	ENSG00000180139.11|ACTA2-AS1|lncRNA|chr10:88933640:88933886:+	0	+
#Deleted in new
chr10	88933646	88933838	ENSG00000180139.11|ACTA2-AS1|lncRNA|chr10:88933646:88933838:+	0	+
#Partially deleted in new
chr10	88940211	88940820	ENSG00000180139.11|ACTA2-AS1|lncRNA|chr10:88940211:88940820:+	0	+
#Deleted in new
chr10	89012198	89012222	ENSG00000026103.21|FAS|pc|chr10:89012198:89012222:+	0	+
#Deleted in new
chr10	89012198	89012335	ENSG00000026103.21|FAS|pc|chr10:89012198:89012335:+	0	+
#Deleted in new
chr10	89012681	89012831	ENSG00000026103.21|FAS|pc|chr10:89012681:89012831:+	0	+
#Partially deleted in new
chr10	89014118	89015532	ENSG00000026103.21|FAS|pc|chr10:89014118:89015532:+	0	+
#Partially deleted in new
chr10	89014118	89015541	ENSG00000026103.21|FAS|pc|chr10:89014118:89015541:+	0	+
#Partially deleted in new
chr10	89014118	89015542	ENSG00000026103.21|FAS|pc|chr10:89014118:89015542:+	0	+
#Deleted in new
chr10	8914486	8914596	ENSG00000234752.1|AC044784.2|lncRNA|chr10:8914486:8914596:+	0	+
#Deleted in new
chr10	89284037	89284554	ENSG00000232110.7|AL353751.1|lncRNA|chr10:89284037:89284554:+	0	+
#Deleted in new
chr10	89285035	89285264	ENSG00000119922.9|IFIT2|pc|chr10:89285035:89285264:+	0	+
#Deleted in new
chr10	89285035	89285264	ENSG00000232110.7|AL353751.1|lncRNA|chr10:89285035:89285264:+	0	+
#Deleted in new
chr10	89291986	89292125	ENSG00000232110.7|AL353751.1|lncRNA|chr10:89291986:89292125:+	0	+
#Deleted in new
chr10	89291990	89292353	ENSG00000107798.17|LIPA|pc|chr10:89291990:89292353:-	0	-
#Deleted in new
chr10	89292288	89292473	ENSG00000119922.9|IFIT2|pc|chr10:89292288:89292473:+	0	+
#Deleted in new
chr10	89293571	89293668	ENSG00000107798.17|LIPA|pc|chr10:89293571:89293668:-	0	-
#Deleted in new
chr10	89314542	89314659	ENSG00000107798.17|LIPA|pc|chr10:89314542:89314659:-	0	-
#Deleted in new
chr10	89332483	89332627	ENSG00000119917.13|IFIT3|pc|chr10:89332483:89332627:+	0	+
#Deleted in new
chr10	89335335	89335534	ENSG00000107798.17|LIPA|pc|chr10:89335335:89335534:-	0	-
#Deleted in new
chr10	89338194	89338288	ENSG00000107798.17|LIPA|pc|chr10:89338194:89338288:-	0	-
#Deleted in new
chr10	89342491	89342659	ENSG00000107798.17|LIPA|pc|chr10:89342491:89342659:-	0	-
#Deleted in new
chr10	89342560	89342610	ENSG00000107798.17|LIPA|pc|chr10:89342560:89342610:-	0	-
#Deleted in new
chr10	89342610	89342674	ENSG00000107798.17|LIPA|pc|chr10:89342610:89342674:-	0	-
#Deleted in new
chr10	89342610	89342704	ENSG00000107798.17|LIPA|pc|chr10:89342610:89342704:-	0	-
#Deleted in new
chr10	89393106	89393341	ENSG00000185745.9|IFIT1|pc|chr10:89393106:89393341:+	0	+
#Duplicated in new
chr10	89402280	89403988	ENSG00000185745.9|IFIT1|pc|chr10:89402280:89403988:+	0	+
#Split in new
chr10	89402280	89406486	ENSG00000185745.9|IFIT1|pc|chr10:89402280:89406486:+	0	+
#Deleted in new
chr10	89412790	89412922	ENSG00000107798.17|LIPA|pc|chr10:89412790:89412922:-	0	-
#Deleted in new
chr10	89414406	89414557	ENSG00000107798.17|LIPA|pc|chr10:89414406:89414557:-	0	-
#Deleted in new
chr10	89414585	89414803	ENSG00000152778.8|IFIT5|pc|chr10:89414585:89414803:+	0	+
#Deleted in new
chr10	89462866	89463078	ENSG00000234452.5|SLC16A12-AS1|lncRNA|chr10:89462866:89463078:+	0	+
#Deleted in new
chr10	89534500	89534640	ENSG00000152779.13|SLC16A12|pc|chr10:89534500:89534640:-	0	-
#Deleted in new
chr10	89555881	89555981	ENSG00000152779.13|SLC16A12|pc|chr10:89555881:89555981:-	0	-
#Deleted in new
chr10	89556523	89556641	ENSG00000152779.13|SLC16A12|pc|chr10:89556523:89556641:-	0	-
#Deleted in new
chr10	89648922	89649021	ENSG00000232936.5|AL157400.2|lncRNA|chr10:89648922:89649021:+	0	+
#Deleted in new
chr10	89650058	89650231	ENSG00000232936.5|AL157400.2|lncRNA|chr10:89650058:89650231:+	0	+
#Deleted in new
chr10	89650552	89650667	ENSG00000232936.5|AL157400.2|lncRNA|chr10:89650552:89650667:+	0	+
#Deleted in new
chr10	89650712	89650822	ENSG00000225836.1|AL157400.1|lncRNA|chr10:89650712:89650822:-	0	-
#Deleted in new
chr10	89667180	89668251	ENSG00000235100.3|AL157400.3|lncRNA|chr10:89667180:89668251:-	0	-
#Deleted in new
chr10	89692528	89692607	ENSG00000235100.3|AL157400.3|lncRNA|chr10:89692528:89692607:-	0	-
#Deleted in new
chr10	89694294	89694802	ENSG00000240996.1|AL157400.4|lncRNA|chr10:89694294:89694802:-	0	-
#Deleted in new
chr10	89697769	89697928	ENSG00000240996.1|AL157400.4|lncRNA|chr10:89697769:89697928:-	0	-
#Deleted in new
chr10	89699523	89699671	ENSG00000235100.3|AL157400.3|lncRNA|chr10:89699523:89699671:-	0	-
#Deleted in new
chr10	8970124	8970272	ENSG00000223808.1|AC044784.1|lncRNA|chr10:8970124:8970272:+	0	+
#Deleted in new
chr10	89829509	89829745	ENSG00000232229.5|LINC00865|lncRNA|chr10:89829509:89829745:+	0	+
#Deleted in new
chr10	89829555	89829745	ENSG00000232229.5|LINC00865|lncRNA|chr10:89829555:89829745:+	0	+
#Deleted in new
chr10	89829969	89830304	ENSG00000232229.5|LINC00865|lncRNA|chr10:89829969:89830304:+	0	+
#Deleted in new
chr10	89835200	89835257	ENSG00000232229.5|LINC00865|lncRNA|chr10:89835200:89835257:+	0	+
#Deleted in new
chr10	89853905	89854007	ENSG00000280560.1|AL138924.1|lncRNA|chr10:89853905:89854007:+	0	+
#Partially deleted in new
chr10	89957148	89957373	ENSG00000226159.1|LINC01375|lncRNA|chr10:89957148:89957373:-	0	-
#Deleted in new
chr10	90406449	90406595	ENSG00000236373.1|AL391704.2|lncRNA|chr10:90406449:90406595:-	0	-
#Deleted in new
chr10	90451679	90451833	ENSG00000236373.1|AL391704.2|lncRNA|chr10:90451679:90451833:-	0	-
#Deleted in new
chr10	90454169	90454315	ENSG00000224750.6|AL391704.1|lncRNA|chr10:90454169:90454315:+	0	+
#Deleted in new
chr10	90454679	90454823	ENSG00000224750.6|AL391704.1|lncRNA|chr10:90454679:90454823:+	0	+
#Deleted in new
chr10	90454697	90454823	ENSG00000224750.6|AL391704.1|lncRNA|chr10:90454697:90454823:+	0	+
#Deleted in new
chr10	90462716	90463386	ENSG00000238291.1|AL391704.3|lncRNA|chr10:90462716:90463386:+	0	+
#Deleted in new
chr10	90467864	90467952	ENSG00000238291.1|AL391704.3|lncRNA|chr10:90467864:90467952:+	0	+
#Deleted in new
chr10	90486018	90486072	ENSG00000224750.6|AL391704.1|lncRNA|chr10:90486018:90486072:+	0	+
#Deleted in new
chr10	90499272	90499371	ENSG00000224750.6|AL391704.1|lncRNA|chr10:90499272:90499371:+	0	+
#Deleted in new
chr10	90527273	90527439	ENSG00000236373.1|AL391704.2|lncRNA|chr10:90527273:90527439:-	0	-
#Deleted in new
chr10	90540731	90540805	ENSG00000236373.1|AL391704.2|lncRNA|chr10:90540731:90540805:-	0	-
#Deleted in new
chr10	90902242	90902344	ENSG00000148688.13|RPP30|pc|chr10:90902242:90902344:+	0	+
#Deleted in new
chr10	90903191	90903262	ENSG00000148688.13|RPP30|pc|chr10:90903191:90903262:+	0	+
#Deleted in new
chr10	90903191	90903276	ENSG00000148688.13|RPP30|pc|chr10:90903191:90903276:+	0	+
#Deleted in new
chr10	90905301	90905638	ENSG00000148688.13|RPP30|pc|chr10:90905301:90905638:+	0	+
#Deleted in new
chr10	90905301	90906065	ENSG00000148688.13|RPP30|pc|chr10:90905301:90906065:+	0	+
#Deleted in new
chr10	90908282	90908553	ENSG00000148688.13|RPP30|pc|chr10:90908282:90908553:+	0	+
#Deleted in new
chr10	90994619	90994753	ENSG00000225519.1|AL365434.1|lncRNA|chr10:90994619:90994753:+	0	+
#Partially deleted in new
chr10	91462094	91463664	ENSG00000165338.16|HECTD2|pc|chr10:91462094:91463664:+	0	+
#Deleted in new
chr10	91782838	91783160	ENSG00000228701.1|TNKS2-AS1|lncRNA|chr10:91782838:91783160:-	0	-
#Deleted in new
chr10	91782935	91783160	ENSG00000228701.1|TNKS2-AS1|lncRNA|chr10:91782935:91783160:-	0	-
#Deleted in new
chr10	91935151	91935160	ENSG00000095564.13|BTAF1|pc|chr10:91935151:91935160:+	0	+
#Deleted in new
chr10	92308477	92308603	ENSG00000198060.9|MARCH5|pc|chr10:92308477:92308603:+	0	+
#Deleted in new
chr10	92333506	92333625	ENSG00000198060.9|MARCH5|pc|chr10:92333506:92333625:+	0	+
#Partially deleted in new
chr10	92474471	92474961	ENSG00000119912.15|IDE|pc|chr10:92474471:92474961:-	0	-
#Partially deleted in new
chr10	92480792	92480916	ENSG00000119912.15|IDE|pc|chr10:92480792:92480916:-	0	-
#Deleted in new
chr10	92554721	92554769	ENSG00000119912.15|IDE|pc|chr10:92554721:92554769:-	0	-
#Deleted in new
chr10	92554880	92554917	ENSG00000119912.15|IDE|pc|chr10:92554880:92554917:-	0	-
#Deleted in new
chr10	92558793	92558922	ENSG00000119912.15|IDE|pc|chr10:92558793:92558922:-	0	-
#Deleted in new
chr10	92559033	92559215	ENSG00000119912.15|IDE|pc|chr10:92559033:92559215:-	0	-
#Deleted in new
chr10	9275832	9275860	ENSG00000230014.1|LINC00709|lncRNA|chr10:9275832:9275860:+	0	+
#Deleted in new
chr10	92999249	92999387	ENSG00000138190.16|EXOC6|pc|chr10:92999249:92999387:+	0	+
#Deleted in new
chr10	933025	933115	ENSG00000229869.1|AL359878.2|lncRNA|chr10:933025:933115:+	0	+
#Partially deleted in new
chr10	93519681	93520277	ENSG00000138180.15|CEP55|pc|chr10:93519681:93520277:+	0	+
#Deleted in new
chr10	93579158	93579206	ENSG00000186188.10|FFAR4|pc|chr10:93579158:93579206:+	0	+
#Partially deleted in new
chr10	93667882	93669868	ENSG00000148690.11|FRA10AC1|pc|chr10:93667882:93669868:-	0	-
#Deleted in new
chr10	93772680	93772907	ENSG00000280485.1|AL358154.1|lncRNA|chr10:93772680:93772907:-	0	-
#Deleted in new
chr10	93793893	93794161	ENSG00000108231.12|LGI1|pc|chr10:93793893:93794161:+	0	+
#Deleted in new
chr10	93801167	93802324	ENSG00000108231.12|LGI1|pc|chr10:93801167:93802324:+	0	+
#Deleted in new
chr10	93954008	93954168	ENSG00000176273.14|SLC35G1|pc|chr10:93954008:93954168:+	0	+
#Deleted in new
chr10	93954008	93954256	ENSG00000176273.14|SLC35G1|pc|chr10:93954008:93954256:+	0	+
#Deleted in new
chr10	94096379	94096449	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94096379:94096449:-	0	-
#Deleted in new
chr10	94096758	94096876	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94096758:94096876:-	0	-
#Deleted in new
chr10	94106020	94106159	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94106020:94106159:-	0	-
#Deleted in new
chr10	94106020	94106194	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94106020:94106194:-	0	-
#Deleted in new
chr10	94107592	94107870	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94107592:94107870:-	0	-
#Deleted in new
chr10	94107710	94107870	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94107710:94107870:-	0	-
#Deleted in new
chr10	94107731	94107870	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94107731:94107870:-	0	-
#Deleted in new
chr10	94107731	94107872	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94107731:94107872:-	0	-
#Deleted in new
chr10	94108357	94108391	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94108357:94108391:-	0	-
#Deleted in new
chr10	94108357	94108475	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94108357:94108475:-	0	-
#Deleted in new
chr10	94108357	94108536	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94108357:94108536:-	0	-
#Partially deleted in new
chr10	94108357	94108680	ENSG00000232913.7|PLCE1-AS2|lncRNA|chr10:94108357:94108680:-	0	-
#Deleted in new
chr10	94120716	94121107	ENSG00000231575.1|AL139118.1|lncRNA|chr10:94120716:94121107:+	0	+
#Deleted in new
chr10	942186	942239	ENSG00000229869.1|AL359878.2|lncRNA|chr10:942186:942239:+	0	+
#Deleted in new
chr10	942479	942743	ENSG00000229869.1|AL359878.2|lncRNA|chr10:942479:942743:+	0	+
#Partially deleted in new
chr10	94325202	94325656	ENSG00000138193.15|PLCE1|pc|chr10:94325202:94325656:+	0	+
#Partially deleted in new
chr10	94508441	94510179	ENSG00000108239.8|TBC1D12|pc|chr10:94508441:94510179:+	0	+
#Deleted in new
chr10	94534338	94534455	ENSG00000108239.8|TBC1D12|pc|chr10:94534338:94534455:+	0	+
#Deleted in new
chr10	94550971	94550996	ENSG00000119969.14|HELLS|pc|chr10:94550971:94550996:+	0	+
#Deleted in new
chr10	94557178	94557196	ENSG00000119969.14|HELLS|pc|chr10:94557178:94557196:+	0	+
#Partially deleted in new
chr10	94569194	94571429	ENSG00000119969.14|HELLS|pc|chr10:94569194:94571429:+	0	+
#Deleted in new
chr10	94570786	94571280	ENSG00000119969.14|HELLS|pc|chr10:94570786:94571280:+	0	+
#Partially deleted in new
chr10	94577438	94577645	ENSG00000244332.1|AL138759.1|lncRNA|chr10:94577438:94577645:+	0	+
#Deleted in new
chr10	94583987	94584125	ENSG00000119969.14|HELLS|pc|chr10:94583987:94584125:+	0	+
#Deleted in new
chr10	94607909	94608026	ENSG00000119969.14|HELLS|pc|chr10:94607909:94608026:+	0	+
#Deleted in new
chr10	94609852	94613905	ENSG00000119969.14|HELLS|pc|chr10:94609852:94613905:+	0	+
#Deleted in new
chr10	94610800	94611238	ENSG00000244332.1|AL138759.1|lncRNA|chr10:94610800:94611238:+	0	+
#Duplicated in new
chr10	95038896	95039375	ENSG00000138115.13|CYP2C8|pc|chr10:95038896:95039375:-	0	-
#Deleted in new
chr10	95040921	95040960	ENSG00000138115.13|CYP2C8|pc|chr10:95040921:95040960:-	0	-
#Deleted in new
chr10	95040927	95040960	ENSG00000138115.13|CYP2C8|pc|chr10:95040927:95040960:-	0	-
#Deleted in new
chr10	95141924	95142004	ENSG00000231829.2|AL157834.1|lncRNA|chr10:95141924:95142004:-	0	-
#Deleted in new
chr10	95142609	95142697	ENSG00000231829.2|AL157834.1|lncRNA|chr10:95142609:95142697:-	0	-
#Deleted in new
chr10	95143235	95143294	ENSG00000231829.2|AL157834.1|lncRNA|chr10:95143235:95143294:-	0	-
#Deleted in new
chr10	95144270	95144418	ENSG00000231829.2|AL157834.1|lncRNA|chr10:95144270:95144418:-	0	-
#Deleted in new
chr10	95168380	95168425	ENSG00000231829.2|AL157834.1|lncRNA|chr10:95168380:95168425:-	0	-
#Deleted in new
chr10	95194199	95194303	ENSG00000173124.14|ACSM6|pc|chr10:95194199:95194303:+	0	+
#Deleted in new
chr10	95201440	95201521	ENSG00000173124.14|ACSM6|pc|chr10:95201440:95201521:+	0	+
#Deleted in new
chr10	95211877	95212034	ENSG00000173124.14|ACSM6|pc|chr10:95211877:95212034:+	0	+
#Deleted in new
chr10	95212857	95212940	ENSG00000173124.14|ACSM6|pc|chr10:95212857:95212940:+	0	+
#Deleted in new
chr10	95219890	95219971	ENSG00000173124.14|ACSM6|pc|chr10:95219890:95219971:+	0	+
#Partially deleted in new
chr10	95225289	95226405	ENSG00000173124.14|ACSM6|pc|chr10:95225289:95226405:+	0	+
#Deleted in new
chr10	95228242	95228426	ENSG00000234026.1|AL157834.2|lncRNA|chr10:95228242:95228426:-	0	-
#Deleted in new
chr10	95230665	95231144	ENSG00000234026.1|AL157834.2|lncRNA|chr10:95230665:95231144:-	0	-
#Deleted in new
chr10	95386990	95387119	ENSG00000095637.21|SORBS1|pc|chr10:95386990:95387119:-	0	-
#Deleted in new
chr10	95711778	95711993	ENSG00000138185.19|ENTPD1|pc|chr10:95711778:95711993:+	0	+
#Partially deleted in new
chr10	95846082	95846220	ENSG00000138185.19|ENTPD1|pc|chr10:95846082:95846220:+	0	+
#Deleted in new
chr10	95861312	95861669	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95861312:95861669:-	0	-
#Deleted in new
chr10	95873431	95873758	ENSG00000240527.1|AL365273.1|lncRNA|chr10:95873431:95873758:+	0	+
#Deleted in new
chr10	95875083	95875666	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95875083:95875666:-	0	-
#Deleted in new
chr10	95875281	95875666	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95875281:95875666:-	0	-
#Deleted in new
chr10	95875387	95875666	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95875387:95875666:-	0	-
#Deleted in new
chr10	95875525	95875666	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95875525:95875666:-	0	-
#Deleted in new
chr10	95876517	95876660	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95876517:95876660:-	0	-
#Deleted in new
chr10	95897557	95897679	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95897557:95897679:-	0	-
#Deleted in new
chr10	95904655	95904938	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95904655:95904938:-	0	-
#Deleted in new
chr10	95904829	95904935	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95904829:95904935:-	0	-
#Deleted in new
chr10	95904829	95904938	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95904829:95904938:-	0	-
#Deleted in new
chr10	95907602	95907761	ENSG00000188649.12|CC2D2B|pc|chr10:95907602:95907761:+	0	+
#Deleted in new
chr10	95907662	95907775	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95907662:95907775:-	0	-
#Deleted in new
chr10	95907662	95907863	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95907662:95907863:-	0	-
#Deleted in new
chr10	95907777	95907882	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95907777:95907882:-	0	-
#Deleted in new
chr10	95907777	95907883	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95907777:95907883:-	0	-
#Deleted in new
chr10	95907964	95908057	ENSG00000188649.12|CC2D2B|pc|chr10:95907964:95908057:+	0	+
#Deleted in new
chr10	95911253	95911359	ENSG00000188649.12|CC2D2B|pc|chr10:95911253:95911359:+	0	+
#Deleted in new
chr10	95911300	95911359	ENSG00000188649.12|CC2D2B|pc|chr10:95911300:95911359:+	0	+
#Deleted in new
chr10	95911300	95911359	ENSG00000270099.1|AL365273.2|pc|chr10:95911300:95911359:+	0	+
#Deleted in new
chr10	95913381	95913437	ENSG00000188649.12|CC2D2B|pc|chr10:95913381:95913437:+	0	+
#Deleted in new
chr10	95913381	95913437	ENSG00000270099.1|AL365273.2|pc|chr10:95913381:95913437:+	0	+
#Deleted in new
chr10	95918937	95921597	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:95918937:95921597:-	0	-
#Deleted in new
chr10	95952322	95952425	ENSG00000188649.12|CC2D2B|pc|chr10:95952322:95952425:+	0	+
#Deleted in new
chr10	95984596	95984695	ENSG00000188649.12|CC2D2B|pc|chr10:95984596:95984695:+	0	+
#Deleted in new
chr10	96000794	96000827	ENSG00000188649.12|CC2D2B|pc|chr10:96000794:96000827:+	0	+
#Deleted in new
chr10	96021277	96021568	ENSG00000226688.6|ENTPD1-AS1|lncRNA|chr10:96021277:96021568:-	0	-
#Deleted in new
chr10	96135169	96135289	ENSG00000177853.14|ZNF518A|pc|chr10:96135169:96135289:+	0	+
#Deleted in new
chr10	96155325	96155398	ENSG00000177853.14|ZNF518A|pc|chr10:96155325:96155398:+	0	+
#Deleted in new
chr10	96155342	96156047	ENSG00000177853.14|ZNF518A|pc|chr10:96155342:96156047:+	0	+
#Deleted in new
chr10	96155923	96156019	ENSG00000177853.14|ZNF518A|pc|chr10:96155923:96156019:+	0	+
#Deleted in new
chr10	96155923	96156047	ENSG00000177853.14|ZNF518A|pc|chr10:96155923:96156047:+	0	+
#Deleted in new
chr10	96156012	96156047	ENSG00000177853.14|ZNF518A|pc|chr10:96156012:96156047:+	0	+
#Deleted in new
chr10	96294881	96294967	ENSG00000229418.2|AL136181.1|lncRNA|chr10:96294881:96294967:-	0	-
#Deleted in new
chr10	96353446	96353455	ENSG00000197430.10|OPALIN|pc|chr10:96353446:96353455:-	0	-
#Deleted in new
chr10	96669530	96669611	ENSG00000155629.14|PIK3AP1|pc|chr10:96669530:96669611:-	0	-
#Deleted in new
chr10	97102295	97102393	ENSG00000187122.16|SLIT1|pc|chr10:97102295:97102393:-	0	-
#Deleted in new
chr10	97102518	97102556	ENSG00000187122.16|SLIT1|pc|chr10:97102518:97102556:-	0	-
#Deleted in new
chr10	97102755	97103110	ENSG00000234855.1|SLIT1-AS1|lncRNA|chr10:97102755:97103110:+	0	+
#Deleted in new
chr10	97103319	97103491	ENSG00000234855.1|SLIT1-AS1|lncRNA|chr10:97103319:97103491:+	0	+
#Deleted in new
chr10	97103585	97103747	ENSG00000234855.1|SLIT1-AS1|lncRNA|chr10:97103585:97103747:+	0	+
#Partially deleted in new
chr10	971145	972993	ENSG00000205740.2|AL359878.1|lncRNA|chr10:971145:972993:-	0	-
#Partially deleted in new
chr10	97256462	97256515	ENSG00000213390.10|ARHGAP19|pc|chr10:97256462:97256515:-	0	-
#Deleted in new
chr10	97258659	97258754	ENSG00000213390.10|ARHGAP19|pc|chr10:97258659:97258754:-	0	-
#Deleted in new
chr10	97342806	97343203	ENSG00000225850.3|AL355490.1|lncRNA|chr10:97342806:97343203:+	0	+
#Deleted in new
chr10	97409523	97409581	ENSG00000052749.13|RRP12|pc|chr10:97409523:97409581:-	0	-
#Deleted in new
chr10	97409661	97409859	ENSG00000052749.13|RRP12|pc|chr10:97409661:97409859:-	0	-
#Deleted in new
chr10	97423887	97424278	ENSG00000052749.13|RRP12|pc|chr10:97423887:97424278:-	0	-
#Deleted in new
chr10	97424798	97424893	ENSG00000052749.13|RRP12|pc|chr10:97424798:97424893:-	0	-
#Deleted in new
chr10	97424800	97424893	ENSG00000052749.13|RRP12|pc|chr10:97424800:97424893:-	0	-
#Deleted in new
chr10	97444221	97444255	ENSG00000171311.12|EXOSC1|pc|chr10:97444221:97444255:-	0	-
#Deleted in new
chr10	97444753	97444877	ENSG00000171311.12|EXOSC1|pc|chr10:97444753:97444877:-	0	-
#Deleted in new
chr10	97480240	97480357	ENSG00000155229.20|MMS19|pc|chr10:97480240:97480357:-	0	-
#Deleted in new
chr10	9758782	9758967	ENSG00000228636.1|AL157401.1|lncRNA|chr10:9758782:9758967:-	0	-
#Deleted in new
chr10	9759078	9759237	ENSG00000228636.1|AL157401.1|lncRNA|chr10:9759078:9759237:-	0	-
#Deleted in new
chr10	98186466	98186563	ENSG00000166024.13|R3HCC1L|pc|chr10:98186466:98186563:+	0	+
#Deleted in new
chr10	98387864	98388084	ENSG00000119943.12|PYROXD2|pc|chr10:98387864:98388084:-	0	-
#Partially deleted in new
chr10	98442387	98442957	ENSG00000107521.18|HPS1|pc|chr10:98442387:98442957:-	0	-
#Partially deleted in new
chr10	99651988	99652210	ENSG00000229278.1|AL133353.1|lncRNA|chr10:99651988:99652210:-	0	-
#Deleted in new
chr10	99653824	99653905	ENSG00000229278.1|AL133353.1|lncRNA|chr10:99653824:99653905:-	0	-
#Deleted in new
chr10	99711843	99713479	ENSG00000014919.12|COX15|pc|chr10:99711843:99713479:-	0	-
#Partially deleted in new
chr1	100007033	100009576	ENSG00000117620.14|SLC35A3|pc|chr1:100007033:100009576:+	0	+
#Deleted in new
chr1	100009287	100009323	ENSG00000117620.14|SLC35A3|pc|chr1:100009287:100009323:+	0	+
#Partially deleted in new
chr1	100027141	100027689	ENSG00000117620.14|SLC35A3|pc|chr1:100027141:100027689:+	0	+
#Partially deleted in new
chr1	100027141	100027712	ENSG00000117620.14|SLC35A3|pc|chr1:100027141:100027712:+	0	+
#Partially deleted in new
chr1	100027141	100027722	ENSG00000117620.14|SLC35A3|pc|chr1:100027141:100027722:+	0	+
#Deleted in new
chr1	10004092	10004307	ENSG00000162444.11|RBP7|pc|chr1:10004092:10004307:+	0	+
#Deleted in new
chr1	100057989	100058081	ENSG00000241073.1|AC093019.2|lncRNA|chr1:100057989:100058081:-	0	-
#Deleted in new
chr1	1001137	1001281	ENSG00000187608.8|ISG15|pc|chr1:1001137:1001281:+	0	+
#Deleted in new
chr1	1001144	1001263	ENSG00000187608.8|ISG15|pc|chr1:1001144:1001263:+	0	+
#Partially deleted in new
chr1	100144068	100144567	ENSG00000122435.9|TRMT13|pc|chr1:100144068:100144567:+	0	+
#Deleted in new
chr1	100149365	100149435	ENSG00000122477.12|LRRC39|pc|chr1:100149365:100149435:-	0	-
#Deleted in new
chr1	100173330	100173370	ENSG00000122477.12|LRRC39|pc|chr1:100173330:100173370:-	0	-
#Partially deleted in new
chr1	100186918	100196422	ENSG00000137992.14|DBT|pc|chr1:100186918:100196422:-	0	-
#Deleted in new
chr1	100264008	100264031	ENSG00000224616.1|RTCA-AS1|lncRNA|chr1:100264008:100264031:-	0	-
#Deleted in new
chr1	100265067	100265247	ENSG00000224616.1|RTCA-AS1|lncRNA|chr1:100265067:100265247:-	0	-
#Partially deleted in new
chr1	100265814	100265917	ENSG00000224616.1|RTCA-AS1|lncRNA|chr1:100265814:100265917:-	0	-
#Deleted in new
chr1	100267165	100267245	ENSG00000137996.12|RTCA|pc|chr1:100267165:100267245:+	0	+
#Deleted in new
chr1	100267499	100267538	ENSG00000137996.12|RTCA|pc|chr1:100267499:100267538:+	0	+
#Deleted in new
chr1	100485915	100485997	ENSG00000228086.1|AL589990.1|lncRNA|chr1:100485915:100485997:-	0	-
#Deleted in new
chr1	100878393	100878447	ENSG00000162694.13|EXTL2|pc|chr1:100878393:100878447:-	0	-
#Deleted in new
chr1	100878423	100878447	ENSG00000162694.13|EXTL2|pc|chr1:100878423:100878447:-	0	-
#Deleted in new
chr1	101011590	101011649	ENSG00000117543.20|DPH5|pc|chr1:101011590:101011649:-	0	-
#Partially deleted in new
chr1	101022934	101023329	ENSG00000117543.20|DPH5|pc|chr1:101022934:101023329:-	0	-
#Deleted in new
chr1	101063610	101063639	ENSG00000233184.6|AC093157.1|lncRNA|chr1:101063610:101063639:+	0	+
#Deleted in new
chr1	101077362	101077508	ENSG00000233184.6|AC093157.1|lncRNA|chr1:101077362:101077508:+	0	+
#Deleted in new
chr1	101085051	101085157	ENSG00000233184.6|AC093157.1|lncRNA|chr1:101085051:101085157:+	0	+
#Deleted in new
chr1	1011996	1012190	ENSG00000224969.1|AL645608.2|lncRNA|chr1:1011996:1012190:-	0	-
#Partially deleted in new
chr1	101243157	101243749	ENSG00000260940.1|AL109741.3|lncRNA|chr1:101243157:101243749:+	0	+
#Partially deleted in new
chr1	10128338	10129448	ENSG00000130939.18|UBE4B|pc|chr1:10128338:10129448:+	0	+
#Deleted in new
chr1	101345762	101345845	ENSG00000231671.1|LINC01307|lncRNA|chr1:101345762:101345845:+	0	+
#Deleted in new
chr1	101350046	101350176	ENSG00000231671.1|LINC01307|lncRNA|chr1:101350046:101350176:+	0	+
#Deleted in new
chr1	101350046	101350185	ENSG00000231671.1|LINC01307|lncRNA|chr1:101350046:101350185:+	0	+
#Deleted in new
chr1	101350048	101350185	ENSG00000231671.1|LINC01307|lncRNA|chr1:101350048:101350185:+	0	+
#Deleted in new
chr1	101639547	101639703	ENSG00000226715.2|LINC01709|lncRNA|chr1:101639547:101639703:+	0	+
#Deleted in new
chr1	101639585	101639703	ENSG00000226715.2|LINC01709|lncRNA|chr1:101639585:101639703:+	0	+
#Deleted in new
chr1	10166243	10166342	ENSG00000130939.18|UBE4B|pc|chr1:10166243:10166342:+	0	+
#Deleted in new
chr1	101723741	101723875	ENSG00000226715.2|LINC01709|lncRNA|chr1:101723741:101723875:+	0	+
#Deleted in new
chr1	101729270	101729614	ENSG00000226715.2|LINC01709|lncRNA|chr1:101729270:101729614:+	0	+
#Deleted in new
chr1	101784923	101785031	ENSG00000226715.2|LINC01709|lncRNA|chr1:101784923:101785031:+	0	+
#Duplicated in new
chr1	101787110	101787572	ENSG00000226715.2|LINC01709|lncRNA|chr1:101787110:101787572:+	0	+
#Deleted in new
chr1	101812409	101813146	ENSG00000118733.16|OLFM3|pc|chr1:101812409:101813146:-	0	-
#Deleted in new
chr1	101837659	101837898	ENSG00000118733.16|OLFM3|pc|chr1:101837659:101837898:-	0	-
#Deleted in new
chr1	102199738	102199997	ENSG00000233359.1|AC114485.1|lncRNA|chr1:102199738:102199997:-	0	-
#Deleted in new
chr1	10230763	10230997	ENSG00000054523.17|KIF1B|pc|chr1:10230763:10230997:+	0	+
#Deleted in new
chr1	102310269	102310328	ENSG00000233359.1|AC114485.1|lncRNA|chr1:102310269:102310328:-	0	-
#Deleted in new
chr1	102387204	102387251	ENSG00000233359.1|AC114485.1|lncRNA|chr1:102387204:102387251:-	0	-
#Deleted in new
chr1	102387361	102387421	ENSG00000233359.1|AC114485.1|lncRNA|chr1:102387361:102387421:-	0	-
#Deleted in new
chr1	102388534	102388629	ENSG00000233359.1|AC114485.1|lncRNA|chr1:102388534:102388629:-	0	-
#Deleted in new
chr1	102763321	102763505	ENSG00000230864.1|AC099567.1|lncRNA|chr1:102763321:102763505:-	0	-
#Deleted in new
chr1	102767522	102767630	ENSG00000230864.1|AC099567.1|lncRNA|chr1:102767522:102767630:-	0	-
#Deleted in new
chr1	102767774	102767802	ENSG00000230864.1|AC099567.1|lncRNA|chr1:102767774:102767802:-	0	-
#Deleted in new
chr1	102772957	102773092	ENSG00000230864.1|AC099567.1|lncRNA|chr1:102772957:102773092:-	0	-
#Deleted in new
chr1	102853591	102853842	ENSG00000230864.1|AC099567.1|lncRNA|chr1:102853591:102853842:-	0	-
#Deleted in new
chr1	102884354	102884585	ENSG00000060718.20|COL11A1|pc|chr1:102884354:102884585:-	0	-
#Deleted in new
chr1	103418078	103418224	ENSG00000224613.6|AC095032.1|lncRNA|chr1:103418078:103418224:-	0	-
#Deleted in new
chr1	103425104	103425465	ENSG00000230759.1|AC095032.2|lncRNA|chr1:103425104:103425465:+	0	+
#Deleted in new
chr1	103429286	103429373	ENSG00000224613.6|AC095032.1|lncRNA|chr1:103429286:103429373:-	0	-
#Deleted in new
chr1	103432890	103433096	ENSG00000224613.6|AC095032.1|lncRNA|chr1:103432890:103433096:-	0	-
#Deleted in new
chr1	10344774	10344917	ENSG00000054523.17|KIF1B|pc|chr1:10344774:10344917:+	0	+
#Deleted in new
chr1	103469341	103469390	ENSG00000224613.6|AC095032.1|lncRNA|chr1:103469341:103469390:-	0	-
#Deleted in new
chr1	103525696	103525823	ENSG00000185946.15|RNPC3|pc|chr1:103525696:103525823:+	0	+
#Partially deleted in new
chr1	103525698	103525930	ENSG00000185946.15|RNPC3|pc|chr1:103525698:103525930:+	0	+
#Deleted in new
chr1	103525756	103525823	ENSG00000185946.15|RNPC3|pc|chr1:103525756:103525823:+	0	+
#Partially deleted in new
chr1	103565030	103565594	ENSG00000240038.6|AMY2B|pc|chr1:103565030:103565594:+	0	+
#Deleted in new
chr1	10381905	10382001	ENSG00000284735.1|AL139424.3|lncRNA|chr1:10381905:10382001:-	0	-
#Deleted in new
chr1	10381977	10382024	ENSG00000284735.1|AL139424.3|lncRNA|chr1:10381977:10382024:-	0	-
#Deleted in new
chr1	10382235	10383105	ENSG00000284735.1|AL139424.3|lncRNA|chr1:10382235:10383105:-	0	-
#Deleted in new
chr1	10384627	10384971	ENSG00000284735.1|AL139424.3|lncRNA|chr1:10384627:10384971:-	0	-
#Partially deleted in new
chr1	10386102	10387150	ENSG00000284735.1|AL139424.3|lncRNA|chr1:10386102:10387150:-	0	-
#Deleted in new
chr1	10386238	10386541	ENSG00000284735.1|AL139424.3|lncRNA|chr1:10386238:10386541:-	0	-
#Deleted in new
chr1	10395415	10395523	ENSG00000284642.1|AL139424.2|lncRNA|chr1:10395415:10395523:+	0	+
#Deleted in new
chr1	10395617	10396376	ENSG00000284642.1|AL139424.2|lncRNA|chr1:10395617:10396376:+	0	+
#Deleted in new
chr1	10395782	10396370	ENSG00000284642.1|AL139424.2|lncRNA|chr1:10395782:10396370:+	0	+
#Deleted in new
chr1	10395850	10396041	ENSG00000284642.1|AL139424.2|lncRNA|chr1:10395850:10396041:+	0	+
#Deleted in new
chr1	10396237	10396376	ENSG00000284642.1|AL139424.2|lncRNA|chr1:10396237:10396376:+	0	+
#Deleted in new
chr1	10396822	10397376	ENSG00000284642.1|AL139424.2|lncRNA|chr1:10396822:10397376:+	0	+
#Deleted in new
chr1	10396822	10397432	ENSG00000284642.1|AL139424.2|lncRNA|chr1:10396822:10397432:+	0	+
#Deleted in new
chr1	10396832	10397363	ENSG00000284642.1|AL139424.2|lncRNA|chr1:10396832:10397363:+	0	+
#Deleted in new
chr1	10398591	10398751	ENSG00000142657.20|PGD|pc|chr1:10398591:10398751:+	0	+
#Deleted in new
chr1	10430782	10431401	ENSG00000175279.21|CENPS|pc|chr1:10430782:10431401:+	0	+
#Deleted in new
chr1	10430803	10431401	ENSG00000251503.8|CENPS-CORT|pc|chr1:10430803:10431401:+	0	+
#Deleted in new
chr1	10430875	10431130	ENSG00000175279.21|CENPS|pc|chr1:10430875:10431130:+	0	+
#Deleted in new
chr1	10431122	10431401	ENSG00000175279.21|CENPS|pc|chr1:10431122:10431401:+	0	+
#Deleted in new
chr1	10431257	10431401	ENSG00000251503.8|CENPS-CORT|pc|chr1:10431257:10431401:+	0	+
#Partially deleted in new
chr1	10456521	10461702	ENSG00000160049.11|DFFA|pc|chr1:10456521:10461702:-	0	-
#Deleted in new
chr1	10458554	10458772	ENSG00000203469.2|AL354956.1|lncRNA|chr1:10458554:10458772:+	0	+
#Deleted in new
chr1	105587574	105587848	ENSG00000230768.7|LINC01676|lncRNA|chr1:105587574:105587848:-	0	-
#Deleted in new
chr1	105587579	105587848	ENSG00000230768.7|LINC01676|lncRNA|chr1:105587579:105587848:-	0	-
#Deleted in new
chr1	105587693	105587848	ENSG00000230768.7|LINC01676|lncRNA|chr1:105587693:105587848:-	0	-
#Deleted in new
chr1	105589679	105589785	ENSG00000230768.7|LINC01676|lncRNA|chr1:105589679:105589785:-	0	-
#Deleted in new
chr1	105589692	105589785	ENSG00000230768.7|LINC01676|lncRNA|chr1:105589692:105589785:-	0	-
#Deleted in new
chr1	105589693	105589785	ENSG00000230768.7|LINC01676|lncRNA|chr1:105589693:105589785:-	0	-
#Deleted in new
chr1	105589696	105589785	ENSG00000230768.7|LINC01676|lncRNA|chr1:105589696:105589785:-	0	-
#Deleted in new
chr1	105590017	105590232	ENSG00000230768.7|LINC01676|lncRNA|chr1:105590017:105590232:-	0	-
#Deleted in new
chr1	105590038	105590232	ENSG00000230768.7|LINC01676|lncRNA|chr1:105590038:105590232:-	0	-
#Deleted in new
chr1	105600491	105600759	ENSG00000230768.7|LINC01676|lncRNA|chr1:105600491:105600759:-	0	-
#Deleted in new
chr1	105600630	105600759	ENSG00000230768.7|LINC01676|lncRNA|chr1:105600630:105600759:-	0	-
#Deleted in new
chr1	105601149	105601385	ENSG00000230768.7|LINC01676|lncRNA|chr1:105601149:105601385:-	0	-
#Deleted in new
chr1	105601269	105601385	ENSG00000230768.7|LINC01676|lncRNA|chr1:105601269:105601385:-	0	-
#Deleted in new
chr1	105602151	105603558	ENSG00000230768.7|LINC01676|lncRNA|chr1:105602151:105603558:-	0	-
#Deleted in new
chr1	105602937	105603558	ENSG00000230768.7|LINC01676|lncRNA|chr1:105602937:105603558:-	0	-
#Deleted in new
chr1	105603276	105603558	ENSG00000230768.7|LINC01676|lncRNA|chr1:105603276:105603558:-	0	-
#Deleted in new
chr1	105603276	105603562	ENSG00000230768.7|LINC01676|lncRNA|chr1:105603276:105603562:-	0	-
#Deleted in new
chr1	105604162	105604260	ENSG00000230768.7|LINC01676|lncRNA|chr1:105604162:105604260:-	0	-
#Deleted in new
chr1	105604162	105604265	ENSG00000230768.7|LINC01676|lncRNA|chr1:105604162:105604265:-	0	-
#Deleted in new
chr1	105605934	105606003	ENSG00000230768.7|LINC01676|lncRNA|chr1:105605934:105606003:-	0	-
#Deleted in new
chr1	105605934	105606007	ENSG00000230768.7|LINC01676|lncRNA|chr1:105605934:105606007:-	0	-
#Deleted in new
chr1	105605934	105606089	ENSG00000230768.7|LINC01676|lncRNA|chr1:105605934:105606089:-	0	-
#Deleted in new
chr1	105605976	105606089	ENSG00000230768.7|LINC01676|lncRNA|chr1:105605976:105606089:-	0	-
#Deleted in new
chr1	105612899	105612944	ENSG00000230768.7|LINC01676|lncRNA|chr1:105612899:105612944:-	0	-
#Deleted in new
chr1	105618774	105618958	ENSG00000230768.7|LINC01676|lncRNA|chr1:105618774:105618958:-	0	-
#Deleted in new
chr1	105618858	105618875	ENSG00000230768.7|LINC01676|lncRNA|chr1:105618858:105618875:-	0	-
#Deleted in new
chr1	105618858	105618918	ENSG00000230768.7|LINC01676|lncRNA|chr1:105618858:105618918:-	0	-
#Deleted in new
chr1	105618858	105618928	ENSG00000230768.7|LINC01676|lncRNA|chr1:105618858:105618928:-	0	-
#Deleted in new
chr1	105618858	105618935	ENSG00000230768.7|LINC01676|lncRNA|chr1:105618858:105618935:-	0	-
#Deleted in new
chr1	105927623	105927714	ENSG00000233047.6|LINC01677|lncRNA|chr1:105927623:105927714:-	0	-
#Deleted in new
chr1	105927624	105927714	ENSG00000233047.6|LINC01677|lncRNA|chr1:105927624:105927714:-	0	-
#Deleted in new
chr1	105935331	105935385	ENSG00000233047.6|LINC01677|lncRNA|chr1:105935331:105935385:-	0	-
#Deleted in new
chr1	105952207	105952279	ENSG00000233047.6|LINC01677|lncRNA|chr1:105952207:105952279:-	0	-
#Deleted in new
chr1	105952503	105952600	ENSG00000233047.6|LINC01677|lncRNA|chr1:105952503:105952600:-	0	-
#Deleted in new
chr1	105952503	105952894	ENSG00000233047.6|LINC01677|lncRNA|chr1:105952503:105952894:-	0	-
#Deleted in new
chr1	105952503	105953712	ENSG00000233047.6|LINC01677|lncRNA|chr1:105952503:105953712:-	0	-
#Deleted in new
chr1	105953371	105953489	ENSG00000233047.6|LINC01677|lncRNA|chr1:105953371:105953489:-	0	-
#Deleted in new
chr1	105953371	105953712	ENSG00000233047.6|LINC01677|lncRNA|chr1:105953371:105953712:-	0	-
#Deleted in new
chr1	105954509	105954711	ENSG00000233047.6|LINC01677|lncRNA|chr1:105954509:105954711:-	0	-
#Deleted in new
chr1	105956501	105956664	ENSG00000233047.6|LINC01677|lncRNA|chr1:105956501:105956664:-	0	-
#Deleted in new
chr1	105956501	105956845	ENSG00000233047.6|LINC01677|lncRNA|chr1:105956501:105956845:-	0	-
#Deleted in new
chr1	105956693	105956847	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105956693:105956847:+	0	+
#Deleted in new
chr1	105956714	105956847	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105956714:105956847:+	0	+
#Deleted in new
chr1	105956715	105956847	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105956715:105956847:+	0	+
#Deleted in new
chr1	105956739	105956847	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105956739:105956847:+	0	+
#Deleted in new
chr1	105957963	105958162	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105957963:105958162:+	0	+
#Deleted in new
chr1	105958754	105958871	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105958754:105958871:+	0	+
#Deleted in new
chr1	105961469	105961523	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105961469:105961523:+	0	+
#Partially deleted in new
chr1	105965679	105965822	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105965679:105965822:+	0	+
#Partially deleted in new
chr1	105965679	105966202	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105965679:105966202:+	0	+
#Partially deleted in new
chr1	105965679	105967623	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105965679:105967623:+	0	+
#Partially deleted in new
chr1	105965683	105965822	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105965683:105965822:+	0	+
#Deleted in new
chr1	105978906	105979020	ENSG00000237480.2|AL355306.2|lncRNA|chr1:105978906:105979020:+	0	+
#Deleted in new
chr1	105992153	105992344	ENSG00000233047.6|LINC01677|lncRNA|chr1:105992153:105992344:-	0	-
#Deleted in new
chr1	105992165	105992344	ENSG00000233047.6|LINC01677|lncRNA|chr1:105992165:105992344:-	0	-
#Deleted in new
chr1	106023081	106023168	ENSG00000233047.6|LINC01677|lncRNA|chr1:106023081:106023168:-	0	-
#Deleted in new
chr1	106023081	106023212	ENSG00000233047.6|LINC01677|lncRNA|chr1:106023081:106023212:-	0	-
#Deleted in new
chr1	106027805	106028062	ENSG00000233047.6|LINC01677|lncRNA|chr1:106027805:106028062:-	0	-
#Deleted in new
chr1	106027805	106028277	ENSG00000233047.6|LINC01677|lncRNA|chr1:106027805:106028277:-	0	-
#Partially deleted in new
chr1	106038349	106038604	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106038349:106038604:+	0	+
#Partially deleted in new
chr1	106038366	106038604	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106038366:106038604:+	0	+
#Deleted in new
chr1	106038546	106038604	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106038546:106038604:+	0	+
#Deleted in new
chr1	106041566	106041651	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106041566:106041651:+	0	+
#Deleted in new
chr1	106041831	106041911	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106041831:106041911:+	0	+
#Deleted in new
chr1	106041831	106042040	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106041831:106042040:+	0	+
#Deleted in new
chr1	106041831	106042738	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106041831:106042738:+	0	+
#Deleted in new
chr1	106046553	106046664	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106046553:106046664:+	0	+
#Partially deleted in new
chr1	106048218	106048753	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106048218:106048753:+	0	+
#Deleted in new
chr1	106073246	106073411	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106073246:106073411:+	0	+
#Deleted in new
chr1	106082964	106083086	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106082964:106083086:+	0	+
#Deleted in new
chr1	106082964	106084304	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106082964:106084304:+	0	+
#Deleted in new
chr1	106084429	106084496	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106084429:106084496:+	0	+
#Deleted in new
chr1	106084429	106084499	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106084429:106084499:+	0	+
#Deleted in new
chr1	106123775	106124564	ENSG00000237480.2|AL355306.2|lncRNA|chr1:106123775:106124564:+	0	+
#Deleted in new
chr1	1062207	1062808	ENSG00000273443.1|AL645608.9|lncRNA|chr1:1062207:1062808:-	0	-
#Deleted in new
chr1	106818238	106818359	ENSG00000237460.2|LINC01661|lncRNA|chr1:106818238:106818359:+	0	+
#Deleted in new
chr1	106820203	106820742	ENSG00000237460.2|LINC01661|lncRNA|chr1:106820203:106820742:+	0	+
#Partially deleted in new
chr1	107672143	107672261	ENSG00000134215.15|VAV3|pc|chr1:107672143:107672261:-	0	-
#Deleted in new
chr1	107820785	107820896	ENSG00000134215.15|VAV3|pc|chr1:107820785:107820896:-	0	-
#Partially deleted in new
chr1	108040262	108040379	ENSG00000226822.2|AL390036.1|lncRNA|chr1:108040262:108040379:+	0	+
#Deleted in new
chr1	108059043	108059448	ENSG00000226822.2|AL390036.1|lncRNA|chr1:108059043:108059448:+	0	+
#Deleted in new
chr1	108071483	108071637	ENSG00000226822.2|AL390036.1|lncRNA|chr1:108071483:108071637:+	0	+
#Deleted in new
chr1	108071483	108072022	ENSG00000226822.2|AL390036.1|lncRNA|chr1:108071483:108072022:+	0	+
#Partially deleted in new
chr1	108072370	108072697	ENSG00000226822.2|AL390036.1|lncRNA|chr1:108072370:108072697:+	0	+
#Deleted in new
chr1	108072548	108072697	ENSG00000226822.2|AL390036.1|lncRNA|chr1:108072548:108072697:+	0	+
#Deleted in new
chr1	108074392	108074493	ENSG00000226822.2|AL390036.1|lncRNA|chr1:108074392:108074493:+	0	+
#Deleted in new
chr1	108074392	108074518	ENSG00000226822.2|AL390036.1|lncRNA|chr1:108074392:108074518:+	0	+
#Deleted in new
chr1	108074392	108074519	ENSG00000226822.2|AL390036.1|lncRNA|chr1:108074392:108074519:+	0	+
#Deleted in new
chr1	108074392	108076020	ENSG00000226822.2|AL390036.1|lncRNA|chr1:108074392:108076020:+	0	+
#Partially deleted in new
chr1	1082145	1082253	ENSG00000131591.17|C1orf159|pc|chr1:1082145:1082253:-	0	-
#Deleted in new
chr1	108223340	108223746	ENSG00000196427.13|NBPF4|pc|chr1:108223340:108223746:-	0	-
#Deleted in new
chr1	108223704	108223746	ENSG00000196427.13|NBPF4|pc|chr1:108223704:108223746:-	0	-
#Deleted in new
chr1	108233159	108233211	ENSG00000196427.13|NBPF4|pc|chr1:108233159:108233211:-	0	-
#Deleted in new
chr1	108234241	108234411	ENSG00000196427.13|NBPF4|pc|chr1:108234241:108234411:-	0	-
#Deleted in new
chr1	108235235	108235287	ENSG00000196427.13|NBPF4|pc|chr1:108235235:108235287:-	0	-
#Deleted in new
chr1	108236269	108236409	ENSG00000196427.13|NBPF4|pc|chr1:108236269:108236409:-	0	-
#Deleted in new
chr1	108237010	108237097	ENSG00000196427.13|NBPF4|pc|chr1:108237010:108237097:-	0	-
#Deleted in new
chr1	108237286	108237338	ENSG00000196427.13|NBPF4|pc|chr1:108237286:108237338:-	0	-
#Deleted in new
chr1	108238747	108238959	ENSG00000196427.13|NBPF4|pc|chr1:108238747:108238959:-	0	-
#Deleted in new
chr1	108239827	108239906	ENSG00000196427.13|NBPF4|pc|chr1:108239827:108239906:-	0	-
#Deleted in new
chr1	108242073	108242173	ENSG00000196427.13|NBPF4|pc|chr1:108242073:108242173:-	0	-
#Deleted in new
chr1	108261195	108262790	ENSG00000238122.1|AL359258.1|lncRNA|chr1:108261195:108262790:-	0	-
#Deleted in new
chr1	108431589	108433184	ENSG00000224698.1|AL390038.1|lncRNA|chr1:108431589:108433184:+	0	+
#Deleted in new
chr1	108454438	108454517	ENSG00000186086.18|NBPF6|pc|chr1:108454438:108454517:+	0	+
#Deleted in new
chr1	108455385	108455597	ENSG00000186086.18|NBPF6|pc|chr1:108455385:108455597:+	0	+
#Deleted in new
chr1	108457006	108457058	ENSG00000186086.18|NBPF6|pc|chr1:108457006:108457058:+	0	+
#Deleted in new
chr1	108457247	108457334	ENSG00000186086.18|NBPF6|pc|chr1:108457247:108457334:+	0	+
#Deleted in new
chr1	108457935	108458075	ENSG00000186086.18|NBPF6|pc|chr1:108457935:108458075:+	0	+
#Deleted in new
chr1	108459057	108459109	ENSG00000186086.18|NBPF6|pc|chr1:108459057:108459109:+	0	+
#Deleted in new
chr1	108459932	108460102	ENSG00000186086.18|NBPF6|pc|chr1:108459932:108460102:+	0	+
#Deleted in new
chr1	108461132	108461184	ENSG00000186086.18|NBPF6|pc|chr1:108461132:108461184:+	0	+
#Deleted in new
chr1	108470596	108470638	ENSG00000186086.18|NBPF6|pc|chr1:108470596:108470638:+	0	+
#Deleted in new
chr1	108470596	108471002	ENSG00000186086.18|NBPF6|pc|chr1:108470596:108471002:+	0	+
#Deleted in new
chr1	1085250	1085310	ENSG00000131591.17|C1orf159|pc|chr1:1085250:1085310:-	0	-
#Deleted in new
chr1	108649340	108649433	ENSG00000162639.15|HENMT1|pc|chr1:108649340:108649433:-	0	-
#Deleted in new
chr1	108660962	108661055	ENSG00000162639.15|HENMT1|pc|chr1:108660962:108661055:-	0	-
#Deleted in new
chr1	108660962	108661064	ENSG00000162639.15|HENMT1|pc|chr1:108660962:108661064:-	0	-
#Partially deleted in new
chr1	108660962	108661122	ENSG00000162639.15|HENMT1|pc|chr1:108660962:108661122:-	0	-
#Deleted in new
chr1	108759056	108759223	ENSG00000116266.10|STXBP3|pc|chr1:108759056:108759223:+	0	+
#Deleted in new
chr1	108843133	108843267	ENSG00000162641.18|AKNAD1|pc|chr1:108843133:108843267:-	0	-
#Deleted in new
chr1	108843133	108843267	ENSG00000274068.1|AL449266.1|pc|chr1:108843133:108843267:-	0	-
#Deleted in new
chr1	108843133	108843284	ENSG00000162641.18|AKNAD1|pc|chr1:108843133:108843284:-	0	-
#Partially deleted in new
chr1	108849536	108849576	ENSG00000162641.18|AKNAD1|pc|chr1:108849536:108849576:-	0	-
#Partially deleted in new
chr1	108849536	108849576	ENSG00000274068.1|AL449266.1|pc|chr1:108849536:108849576:-	0	-
#Partially deleted in new
chr1	108877407	108877574	ENSG00000121957.12|GPSM2|pc|chr1:108877407:108877574:+	0	+
#Partially deleted in new
chr1	108929938	108931485	ENSG00000121940.15|CLCC1|pc|chr1:108929938:108931485:-	0	-
#Partially deleted in new
chr1	108931985	108932501	ENSG00000121940.15|CLCC1|pc|chr1:108931985:108932501:-	0	-
#Deleted in new
chr1	109024864	109024992	ENSG00000085433.15|WDR47|pc|chr1:109024864:109024992:-	0	-
#Partially deleted in new
chr1	1090352	1091374	ENSG00000131591.17|C1orf159|pc|chr1:1090352:1091374:-	0	-
#Deleted in new
chr1	1090875	1090983	ENSG00000131591.17|C1orf159|pc|chr1:1090875:1090983:-	0	-
#Partially deleted in new
chr1	109087970	109090858	ENSG00000273382.1|AL356488.3|lncRNA|chr1:109087970:109090858:-	0	-
#Deleted in new
chr1	109186548	109187670	ENSG00000116299.16|KIAA1324|pc|chr1:109186548:109187670:+	0	+
#Partially deleted in new
chr1	1091990	1092294	ENSG00000131591.17|C1orf159|pc|chr1:1091990:1092294:-	0	-
#Deleted in new
chr1	1092565	1092813	ENSG00000131591.17|C1orf159|pc|chr1:1092565:1092813:-	0	-
#Partially deleted in new
chr1	109366782	109367481	ENSG00000134243.11|SORT1|pc|chr1:109366782:109367481:-	0	-
#Partially deleted in new
chr1	109368477	109368808	ENSG00000134243.11|SORT1|pc|chr1:109368477:109368808:-	0	-
#Duplicated in new
chr1	109656080	109656425	ENSG00000168765.16|GSTM4|pc|chr1:109656080:109656425:+	0	+
#Duplicated in new
chr1	109656116	109656425	ENSG00000168765.16|GSTM4|pc|chr1:109656116:109656425:+	0	+
#Duplicated in new
chr1	109656117	109656425	ENSG00000168765.16|GSTM4|pc|chr1:109656117:109656425:+	0	+
#Duplicated in new
chr1	109656120	109656425	ENSG00000168765.16|GSTM4|pc|chr1:109656120:109656425:+	0	+
#Duplicated in new
chr1	109656121	109656425	ENSG00000168765.16|GSTM4|pc|chr1:109656121:109656425:+	0	+
#Duplicated in new
chr1	109658999	109661742	ENSG00000168765.16|GSTM4|pc|chr1:109658999:109661742:+	0	+
#Partially deleted in new
chr1	109669470	109670099	ENSG00000213366.12|GSTM2|pc|chr1:109669470:109670099:+	0	+
#Partially deleted in new
chr1	109669546	109670063	ENSG00000213366.12|GSTM2|pc|chr1:109669546:109670063:+	0	+
#Deleted in new
chr1	109669635	109670023	ENSG00000213366.12|GSTM2|pc|chr1:109669635:109670023:+	0	+
#Deleted in new
chr1	109670174	109670234	ENSG00000213366.12|GSTM2|pc|chr1:109670174:109670234:+	0	+
#Deleted in new
chr1	109681808	109681834	ENSG00000213366.12|GSTM2|pc|chr1:109681808:109681834:+	0	+
#Deleted in new
chr1	109683206	109683584	ENSG00000213366.12|GSTM2|pc|chr1:109683206:109683584:+	0	+
#Deleted in new
chr1	109683206	109683997	ENSG00000213366.12|GSTM2|pc|chr1:109683206:109683997:+	0	+
#Deleted in new
chr1	109705230	109709551	ENSG00000213366.12|GSTM2|pc|chr1:109705230:109709551:+	0	+
#Deleted in new
chr1	109708480	109708685	ENSG00000134184.12|GSTM1|pc|chr1:109708480:109708685:+	0	+
#Deleted in new
chr1	109708480	109709039	ENSG00000134184.12|GSTM1|pc|chr1:109708480:109709039:+	0	+
#Deleted in new
chr1	109708480	109709549	ENSG00000213366.12|GSTM2|pc|chr1:109708480:109709549:+	0	+
#Duplicated in new
chr1	109717336	109718266	ENSG00000134201.10|GSTM5|pc|chr1:109717336:109718266:+	0	+
#Deleted in new
chr1	109725819	109726068	ENSG00000241720.2|AL158847.1|lncRNA|chr1:109725819:109726068:+	0	+
#Partially deleted in new
chr1	109733931	109737169	ENSG00000134202.10|GSTM3|pc|chr1:109733931:109737169:-	0	-
#Deleted in new
chr1	109737429	109737432	ENSG00000134202.10|GSTM3|pc|chr1:109737429:109737432:-	0	-
#Deleted in new
chr1	109740952	109741038	ENSG00000134202.10|GSTM3|pc|chr1:109740952:109741038:-	0	-
#Deleted in new
chr1	109775071	109775252	ENSG00000241720.2|AL158847.1|lncRNA|chr1:109775071:109775252:+	0	+
#Deleted in new
chr1	109775071	109775428	ENSG00000134201.10|GSTM5|pc|chr1:109775071:109775428:+	0	+
#Deleted in new
chr1	109833299	109833415	ENSG00000228420.1|LINC01768|lncRNA|chr1:109833299:109833415:+	0	+
#Deleted in new
chr11	10016467	10016979	ENSG00000133812.15|SBF2|pc|chr11:10016467:10016979:-	0	-
#Deleted in new
chr1	110031576	110031640	ENSG00000143093.14|STRIP1|pc|chr1:110031576:110031640:+	0	+
#Deleted in new
chr11	10044518	10044606	ENSG00000133812.15|SBF2|pc|chr11:10044518:10044606:-	0	-
#Partially deleted in new
chr11	100738442	100738498	ENSG00000165895.17|ARHGAP42|pc|chr11:100738442:100738498:+	0	+
#Deleted in new
chr11	100839403	100839592	ENSG00000165895.17|ARHGAP42|pc|chr11:100839403:100839592:+	0	+
#Deleted in new
chr11	100840559	100840671	ENSG00000165895.17|ARHGAP42|pc|chr11:100840559:100840671:+	0	+
#Deleted in new
chr11	100986073	100986352	ENSG00000165895.17|ARHGAP42|pc|chr11:100986073:100986352:+	0	+
#Partially deleted in new
chr11	101062446	101064025	ENSG00000082175.14|PGR|pc|chr11:101062446:101064025:-	0	-
#Deleted in new
chr1	110109604	110109719	ENSG00000258673.1|LINC01397|lncRNA|chr1:110109604:110109719:+	0	+
#Deleted in new
chr11	101133010	101133125	ENSG00000282728.1|PGR-AS1|lncRNA|chr11:101133010:101133125:+	0	+
#Deleted in new
chr11	101148142	101148232	ENSG00000282728.1|PGR-AS1|lncRNA|chr11:101148142:101148232:+	0	+
#Deleted in new
chr11	101148149	101148232	ENSG00000282728.1|PGR-AS1|lncRNA|chr11:101148149:101148232:+	0	+
#Deleted in new
chr11	101159158	101159255	ENSG00000282728.1|PGR-AS1|lncRNA|chr11:101159158:101159255:+	0	+
#Deleted in new
chr11	101195484	101195639	ENSG00000282728.1|PGR-AS1|lncRNA|chr11:101195484:101195639:+	0	+
#Deleted in new
chr11	10149191	10149562	ENSG00000254865.1|AC100763.1|lncRNA|chr11:10149191:10149562:+	0	+
#Deleted in new
chr1	11015523	11015646	ENSG00000120948.16|TARDBP|pc|chr1:11015523:11015646:+	0	+
#Deleted in new
chr1	11016122	11016254	ENSG00000120948.16|TARDBP|pc|chr1:11016122:11016254:+	0	+
#Deleted in new
chr11	10164958	10165109	ENSG00000254865.1|AC100763.1|lncRNA|chr11:10164958:10165109:+	0	+
#Deleted in new
chr1	11018373	11018453	ENSG00000120948.16|TARDBP|pc|chr1:11018373:11018453:+	0	+
#Deleted in new
chr11	101872297	101872562	ENSG00000137672.12|TRPC6|pc|chr11:101872297:101872562:-	0	-
#Deleted in new
chr11	101997598	101998028	ENSG00000110318.13|CEP126|pc|chr11:101997598:101998028:+	0	+
#Deleted in new
chr11	101997598	101998030	ENSG00000110318.13|CEP126|pc|chr11:101997598:101998030:+	0	+
#Deleted in new
chr11	101997598	102001058	ENSG00000110318.13|CEP126|pc|chr11:101997598:102001058:+	0	+
#Deleted in new
chr11	102319876	102320006	ENSG00000023445.13|BIRC3|pc|chr11:102319876:102320006:+	0	+
#Deleted in new
chr11	102320285	102320400	ENSG00000023445.13|BIRC3|pc|chr11:102320285:102320400:+	0	+
#Deleted in new
chr11	102326728	102326851	ENSG00000023445.13|BIRC3|pc|chr11:102326728:102326851:+	0	+
#Partially deleted in new
chr11	102336908	102339394	ENSG00000023445.13|BIRC3|pc|chr11:102336908:102339394:+	0	+
#Partially deleted in new
chr11	102336908	102339403	ENSG00000023445.13|BIRC3|pc|chr11:102336908:102339403:+	0	+
#Deleted in new
chr11	102347210	102347376	ENSG00000110330.8|BIRC2|pc|chr11:102347210:102347376:+	0	+
#Deleted in new
chr11	102347213	102347376	ENSG00000110330.8|BIRC2|pc|chr11:102347213:102347376:+	0	+
#Deleted in new
chr11	102347216	102347376	ENSG00000110330.8|BIRC2|pc|chr11:102347216:102347376:+	0	+
#Deleted in new
chr11	102347223	102347376	ENSG00000110330.8|BIRC2|pc|chr11:102347223:102347376:+	0	+
#Deleted in new
chr11	102347234	102347376	ENSG00000110330.8|BIRC2|pc|chr11:102347234:102347376:+	0	+
#Deleted in new
chr11	102347246	102347376	ENSG00000110330.8|BIRC2|pc|chr11:102347246:102347376:+	0	+
#Deleted in new
chr11	102347252	102347376	ENSG00000110330.8|BIRC2|pc|chr11:102347252:102347376:+	0	+
#Deleted in new
chr11	102347268	102347376	ENSG00000110330.8|BIRC2|pc|chr11:102347268:102347376:+	0	+
#Deleted in new
chr11	102347373	102347845	ENSG00000110330.8|BIRC2|pc|chr11:102347373:102347845:+	0	+
#Deleted in new
chr11	102452918	102453049	ENSG00000255337.1|AP001830.1|lncRNA|chr11:102452918:102453049:+	0	+
#Deleted in new
chr11	102461447	102462008	ENSG00000255337.1|AP001830.1|lncRNA|chr11:102461447:102462008:+	0	+
#Deleted in new
chr11	102467254	102467368	ENSG00000255482.1|AP001830.2|lncRNA|chr11:102467254:102467368:+	0	+
#Deleted in new
chr11	102493779	102493864	ENSG00000255482.1|AP001830.2|lncRNA|chr11:102493779:102493864:+	0	+
#Deleted in new
chr11	102498506	102498801	ENSG00000255482.1|AP001830.2|lncRNA|chr11:102498506:102498801:+	0	+
#Deleted in new
chr11	102583462	102583607	ENSG00000137674.3|MMP20|pc|chr11:102583462:102583607:-	0	-
#Deleted in new
chr11	102607200	102607452	ENSG00000256916.1|AP000851.1|lncRNA|chr11:102607200:102607452:+	0	+
#Deleted in new
chr11	102607366	102607452	ENSG00000256916.1|AP000851.1|lncRNA|chr11:102607366:102607452:+	0	+
#Deleted in new
chr11	102607695	102607850	ENSG00000137674.3|MMP20|pc|chr11:102607695:102607850:-	0	-
#Deleted in new
chr11	102607709	102608122	ENSG00000256916.1|AP000851.1|lncRNA|chr11:102607709:102608122:+	0	+
#Deleted in new
chr11	102626658	102626780	ENSG00000256916.1|AP000851.1|lncRNA|chr11:102626658:102626780:+	0	+
#Deleted in new
chr11	102627708	102628070	ENSG00000256916.1|AP000851.1|lncRNA|chr11:102627708:102628070:+	0	+
#Deleted in new
chr11	102681821	102681888	ENSG00000281655.1|AP000851.2|lncRNA|chr11:102681821:102681888:+	0	+
#Deleted in new
chr11	102683324	102683913	ENSG00000281655.1|AP000851.2|lncRNA|chr11:102683324:102683913:+	0	+
#Deleted in new
chr11	102723479	102723546	ENSG00000118113.11|MMP8|pc|chr11:102723479:102723546:-	0	-
#Deleted in new
chr11	102723834	102723945	ENSG00000118113.11|MMP8|pc|chr11:102723834:102723945:-	0	-
#Deleted in new
chr11	102726983	102727050	ENSG00000118113.11|MMP8|pc|chr11:102726983:102727050:-	0	-
#Deleted in new
chr1	110283000	110283100	ENSG00000116396.14|KCNC4|pc|chr1:110283000:110283100:+	0	+
#Deleted in new
chr1	110286374	110288571	ENSG00000227963.1|AL355488.1|lncRNA|chr1:110286374:110288571:-	0	-
#Deleted in new
chr11	102945118	102945236	ENSG00000137745.11|MMP13|pc|chr11:102945118:102945236:-	0	-
#Deleted in new
chr1	11029686	11029781	ENSG00000277726.4|AL109811.4|pc|chr1:11029686:11029781:+	0	+
#Deleted in new
chr1	11029757	11029781	ENSG00000271895.2|AL109811.3|lncRNA|chr1:11029757:11029781:+	0	+
#Deleted in new
chr11	103079908	103079997	ENSG00000137692.11|DCUN1D5|pc|chr11:103079908:103079997:-	0	-
#Deleted in new
chr1	110318764	110318882	ENSG00000227963.1|AL355488.1|lncRNA|chr1:110318764:110318882:-	0	-
#Deleted in new
chr11	10330569	10330709	ENSG00000133805.15|AMPD3|pc|chr11:10330569:10330709:+	0	+
#Deleted in new
chr11	10330659	10330709	ENSG00000133805.15|AMPD3|pc|chr11:10330659:10330709:+	0	+
#Deleted in new
chr11	10357272	10357391	ENSG00000133805.15|AMPD3|pc|chr11:10357272:10357391:+	0	+
#Deleted in new
chr11	103675993	103676174	ENSG00000254987.1|AP002989.1|lncRNA|chr11:103675993:103676174:-	0	-
#Deleted in new
chr11	103680233	103680342	ENSG00000254987.1|AP002989.1|lncRNA|chr11:103680233:103680342:-	0	-
#Deleted in new
chr1	110379796	110379889	ENSG00000168679.17|SLC16A4|pc|chr1:110379796:110379889:-	0	-
#Deleted in new
chr11	103893874	103893953	ENSG00000254987.1|AP002989.1|lncRNA|chr11:103893874:103893953:-	0	-
#Deleted in new
chr11	103895223	103895271	ENSG00000254987.1|AP002989.1|lncRNA|chr11:103895223:103895271:-	0	-
#Deleted in new
chr11	103945547	103945997	ENSG00000255548.1|AP003043.1|lncRNA|chr11:103945547:103945997:+	0	+
#Deleted in new
chr11	10408367	10408505	ENSG00000133805.15|AMPD3|pc|chr11:10408367:10408505:+	0	+
#Partially deleted in new
chr1	110408921	110409158	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110408921:110409158:+	0	+
#Deleted in new
chr1	110408969	110409158	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110408969:110409158:+	0	+
#Deleted in new
chr1	110409084	110409158	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110409084:110409158:+	0	+
#Deleted in new
chr11	10410756	10410822	ENSG00000133805.15|AMPD3|pc|chr11:10410756:10410822:+	0	+
#Deleted in new
chr11	10410756	10410838	ENSG00000133805.15|AMPD3|pc|chr11:10410756:10410838:+	0	+
#Partially deleted in new
chr1	110412014	110412293	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110412014:110412293:+	0	+
#Deleted in new
chr1	110413320	110413410	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110413320:110413410:+	0	+
#Deleted in new
chr1	110417488	110417640	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110417488:110417640:+	0	+
#Deleted in new
chr1	110417499	110417640	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110417499:110417640:+	0	+
#Deleted in new
chr1	110417578	110417640	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110417578:110417640:+	0	+
#Deleted in new
chr1	110417793	110417916	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110417793:110417916:+	0	+
#Deleted in new
chr1	110417818	110417916	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110417818:110417916:+	0	+
#Deleted in new
chr1	110418246	110418274	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418274:+	0	+
#Deleted in new
chr1	110418246	110418293	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418293:+	0	+
#Deleted in new
chr1	110418246	110418303	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418303:+	0	+
#Deleted in new
chr1	110418246	110418307	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418307:+	0	+
#Deleted in new
chr1	110418246	110418311	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418311:+	0	+
#Deleted in new
chr1	110418246	110418312	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418312:+	0	+
#Deleted in new
chr1	110418246	110418313	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418313:+	0	+
#Deleted in new
chr1	110418246	110418314	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418314:+	0	+
#Deleted in new
chr1	110418246	110418356	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418356:+	0	+
#Deleted in new
chr1	110418246	110418362	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418362:+	0	+
#Deleted in new
chr1	110418246	110418366	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418366:+	0	+
#Deleted in new
chr1	110418246	110418375	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418375:+	0	+
#Deleted in new
chr1	110418246	110418673	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418246:110418673:+	0	+
#Deleted in new
chr1	110418276	110418366	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110418276:110418366:+	0	+
#Deleted in new
chr1	110421352	110421638	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110421352:110421638:+	0	+
#Deleted in new
chr1	110421634	110421716	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110421634:110421716:+	0	+
#Deleted in new
chr1	110421634	110422024	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110421634:110422024:+	0	+
#Deleted in new
chr1	110423468	110423526	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110423468:110423526:+	0	+
#Deleted in new
chr1	110423654	110423878	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110423654:110423878:+	0	+
#Deleted in new
chr1	110431276	110431361	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110431276:110431361:+	0	+
#Deleted in new
chr1	110437111	110437621	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110437111:110437621:+	0	+
#Deleted in new
chr1	110437111	110437632	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110437111:110437632:+	0	+
#Deleted in new
chr1	110437111	110437745	ENSG00000224699.8|LAMTOR5-AS1|lncRNA|chr1:110437111:110437745:+	0	+
#Deleted in new
chr11	104512148	104512233	ENSG00000256422.5|LINC02552|lncRNA|chr11:104512148:104512233:-	0	-
#Deleted in new
chr11	104539930	104540025	ENSG00000256422.5|LINC02552|lncRNA|chr11:104539930:104540025:-	0	-
#Deleted in new
chr11	104544698	104544786	ENSG00000256422.5|LINC02552|lncRNA|chr11:104544698:104544786:-	0	-
#Deleted in new
chr11	104544875	104545149	ENSG00000256422.5|LINC02552|lncRNA|chr11:104544875:104545149:-	0	-
#Deleted in new
chr11	104568529	104568921	ENSG00000256422.5|LINC02552|lncRNA|chr11:104568529:104568921:-	0	-
#Deleted in new
chr11	104569047	104569131	ENSG00000256422.5|LINC02552|lncRNA|chr11:104569047:104569131:-	0	-
#Deleted in new
chr1	110457045	110457354	ENSG00000270380.1|AL358215.1|lncRNA|chr1:110457045:110457354:-	0	-
#Deleted in new
chr11	104572556	104572597	ENSG00000256422.5|LINC02552|lncRNA|chr11:104572556:104572597:-	0	-
#Deleted in new
chr1	110472542	110472862	ENSG00000282887.2|AL358215.2|lncRNA|chr1:110472542:110472862:+	0	+
#Deleted in new
chr1	110473566	110473794	ENSG00000282887.2|AL358215.2|lncRNA|chr1:110473566:110473794:+	0	+
#Deleted in new
chr1	110473755	110473794	ENSG00000283999.1|AL358215.3|lncRNA|chr1:110473755:110473794:+	0	+
#Deleted in new
chr1	110473775	110473794	ENSG00000282887.2|AL358215.2|lncRNA|chr1:110473775:110473794:+	0	+
#Deleted in new
chr1	110473943	110474082	ENSG00000282887.2|AL358215.2|lncRNA|chr1:110473943:110474082:+	0	+
#Deleted in new
chr1	110473943	110474082	ENSG00000283999.1|AL358215.3|lncRNA|chr1:110473943:110474082:+	0	+
#Deleted in new
chr1	110474707	110474966	ENSG00000282887.2|AL358215.2|lncRNA|chr1:110474707:110474966:+	0	+
#Deleted in new
chr1	110474707	110474980	ENSG00000282887.2|AL358215.2|lncRNA|chr1:110474707:110474980:+	0	+
#Deleted in new
chr11	104942865	104942973	ENSG00000196954.13|CASP4|pc|chr11:104942865:104942973:-	0	-
#Deleted in new
chr11	104942867	104942973	ENSG00000196954.13|CASP4|pc|chr11:104942867:104942973:-	0	-
#Deleted in new
chr11	104942868	104942973	ENSG00000196954.13|CASP4|pc|chr11:104942868:104942973:-	0	-
#Partially deleted in new
chr11	104942869	104944851	ENSG00000196954.13|CASP4|pc|chr11:104942869:104944851:-	0	-
#Deleted in new
chr11	104942872	104942973	ENSG00000196954.13|CASP4|pc|chr11:104942872:104942973:-	0	-
#Partially deleted in new
chr11	104968518	104969436	ENSG00000196954.13|CASP4|pc|chr11:104968518:104969436:-	0	-
#Deleted in new
chr11	104969249	104969366	ENSG00000196954.13|CASP4|pc|chr11:104969249:104969366:-	0	-
#Deleted in new
chr11	10498400	10498436	ENSG00000133805.15|AMPD3|pc|chr11:10498400:10498436:+	0	+
#Deleted in new
chr11	1049879	1049962	ENSG00000254872.3|AC139749.1|lncRNA|chr11:1049879:1049962:+	0	+
#Deleted in new
chr11	10499244	10499356	ENSG00000133805.15|AMPD3|pc|chr11:10499244:10499356:+	0	+
#Deleted in new
chr11	104994234	104994347	ENSG00000137757.10|CASP5|pc|chr11:104994234:104994347:-	0	-
#Deleted in new
chr11	104994239	104994347	ENSG00000137757.10|CASP5|pc|chr11:104994239:104994347:-	0	-
#Deleted in new
chr11	104994242	104994347	ENSG00000137757.10|CASP5|pc|chr11:104994242:104994347:-	0	-
#Deleted in new
chr11	104994276	104994347	ENSG00000137757.10|CASP5|pc|chr11:104994276:104994347:-	0	-
#Deleted in new
chr11	104995188	104995253	ENSG00000137757.10|CASP5|pc|chr11:104995188:104995253:-	0	-
#Deleted in new
chr11	105008806	105008980	ENSG00000137757.10|CASP5|pc|chr11:105008806:105008980:-	0	-
#Deleted in new
chr11	105008806	105009019	ENSG00000137757.10|CASP5|pc|chr11:105008806:105009019:-	0	-
#Deleted in new
chr11	105008806	105009053	ENSG00000137757.10|CASP5|pc|chr11:105008806:105009053:-	0	-
#Deleted in new
chr11	105033063	105033126	ENSG00000137752.23|CASP1|pc|chr11:105033063:105033126:-	0	-
#Deleted in new
chr11	105041325	105041719	ENSG00000204397.7|CARD16|pc|chr11:105041325:105041719:-	0	-
#Deleted in new
chr11	105041522	105041719	ENSG00000204397.7|CARD16|pc|chr11:105041522:105041719:-	0	-
#Deleted in new
chr11	105041570	105041719	ENSG00000204397.7|CARD16|pc|chr11:105041570:105041719:-	0	-
#Deleted in new
chr11	105041658	105041719	ENSG00000204397.7|CARD16|pc|chr11:105041658:105041719:-	0	-
#Deleted in new
chr11	105043482	105043545	ENSG00000204397.7|CARD16|pc|chr11:105043482:105043545:-	0	-
#Duplicated in new
chr11	105044391	105044658	ENSG00000204397.7|CARD16|pc|chr11:105044391:105044658:-	0	-
#Deleted in new
chr11	105137720	105138098	ENSG00000255501.1|CARD18|pc|chr11:105137720:105138098:-	0	-
#Deleted in new
chr11	105137942	105138098	ENSG00000255501.1|CARD18|pc|chr11:105137942:105138098:-	0	-
#Deleted in new
chr11	105138027	105138098	ENSG00000255501.1|CARD18|pc|chr11:105138027:105138098:-	0	-
#Deleted in new
chr11	105139509	105139593	ENSG00000255501.1|CARD18|pc|chr11:105139509:105139593:-	0	-
#Deleted in new
chr11	105139719	105139726	ENSG00000255501.1|CARD18|pc|chr11:105139719:105139726:-	0	-
#Deleted in new
chr11	105157926	105158090	ENSG00000254998.1|AP003181.1|lncRNA|chr11:105157926:105158090:-	0	-
#Deleted in new
chr11	105160264	105160356	ENSG00000254998.1|AP003181.1|lncRNA|chr11:105160264:105160356:-	0	-
#Deleted in new
chr11	105259641	105259685	ENSG00000254998.1|AP003181.1|lncRNA|chr11:105259641:105259685:-	0	-
#Partially deleted in new
chr11	1052610	1055749	ENSG00000254872.3|AC139749.1|lncRNA|chr11:1052610:1055749:+	0	+
#Deleted in new
chr11	105268262	105268311	ENSG00000254998.1|AP003181.1|lncRNA|chr11:105268262:105268311:-	0	-
#Deleted in new
chr1	110532749	110533148	ENSG00000177301.14|KCNA2|pc|chr1:110532749:110533148:-	0	-
#Partially deleted in new
chr11	10541271	10541542	ENSG00000177112.7|MRVI1-AS1|lncRNA|chr11:10541271:10541542:+	0	+
#Deleted in new
chr11	10541296	10541542	ENSG00000177112.7|MRVI1-AS1|lncRNA|chr11:10541296:10541542:+	0	+
#Partially deleted in new
chr11	1055113	1055749	ENSG00000254872.3|AC139749.1|lncRNA|chr11:1055113:1055749:+	0	+
#Deleted in new
chr11	105531601	105531697	ENSG00000254998.1|AP003181.1|lncRNA|chr11:105531601:105531697:-	0	-
#Deleted in new
chr1	110557398	110557435	ENSG00000177301.14|KCNA2|pc|chr1:110557398:110557435:-	0	-
#Deleted in new
chr1	110577088	110577173	ENSG00000177301.14|KCNA2|pc|chr1:110577088:110577173:-	0	-
#Deleted in new
chr11	105797725	105797913	ENSG00000152578.12|GRIA4|pc|chr11:105797725:105797913:+	0	+
#Deleted in new
chr1	1105955	1106049	ENSG00000131591.17|C1orf159|pc|chr1:1105955:1106049:-	0	-
#Deleted in new
chr1	1105955	1106127	ENSG00000131591.17|C1orf159|pc|chr1:1105955:1106127:-	0	-
#Deleted in new
chr11	10595720	10595795	ENSG00000177112.7|MRVI1-AS1|lncRNA|chr11:10595720:10595795:+	0	+
#Deleted in new
chr11	105995622	105996049	ENSG00000170903.10|MSANTD4|pc|chr11:105995622:105996049:-	0	-
#Deleted in new
chr11	105996202	105996617	ENSG00000170903.10|MSANTD4|pc|chr11:105996202:105996617:-	0	-
#Partially deleted in new
chr11	106057425	106058052	ENSG00000182359.14|KBTBD3|pc|chr11:106057425:106058052:-	0	-
#Deleted in new
chr11	106075500	106075576	ENSG00000149313.10|AASDHPPT|pc|chr11:106075500:106075576:+	0	+
#Deleted in new
chr11	106085989	106086372	ENSG00000254433.1|AP001001.1|lncRNA|chr11:106085989:106086372:-	0	-
#Deleted in new
chr11	106089525	106089557	ENSG00000254433.1|AP001001.1|lncRNA|chr11:106089525:106089557:-	0	-
#Partially deleted in new
chr11	106091466	106094654	ENSG00000149313.10|AASDHPPT|pc|chr11:106091466:106094654:+	0	+
#Deleted in new
chr11	106095783	106095851	ENSG00000254433.1|AP001001.1|lncRNA|chr11:106095783:106095851:-	0	-
#Deleted in new
chr11	106119713	106119906	ENSG00000254580.1|AP001001.2|lncRNA|chr11:106119713:106119906:-	0	-
#Deleted in new
chr11	106132065	106132116	ENSG00000254580.1|AP001001.2|lncRNA|chr11:106132065:106132116:-	0	-
#Deleted in new
chr11	10630005	10630071	ENSG00000072952.18|MRVI1|pc|chr11:10630005:10630071:-	0	-
#Deleted in new
chr1	1106649	1106871	ENSG00000131591.17|C1orf159|pc|chr1:1106649:1106871:-	0	-
#Deleted in new
chr11	106746550	106746643	ENSG00000152402.10|GUCY1A2|pc|chr11:106746550:106746643:-	0	-
#Deleted in new
chr11	10687508	10687777	ENSG00000072952.18|MRVI1|pc|chr11:10687508:10687777:-	0	-
#Deleted in new
chr11	10690264	10690369	ENSG00000072952.18|MRVI1|pc|chr11:10690264:10690369:-	0	-
#Partially deleted in new
chr11	106936649	106936712	ENSG00000152402.10|GUCY1A2|pc|chr11:106936649:106936712:-	0	-
#Deleted in new
chr11	107312131	107316271	ENSG00000261098.1|AP000766.1|lncRNA|chr11:107312131:107316271:-	0	-
#Deleted in new
chr11	107345413	107345490	ENSG00000152404.15|CWF19L2|pc|chr11:107345413:107345490:-	0	-
#Deleted in new
chr11	107563546	107563736	ENSG00000137760.14|ALKBH8|pc|chr11:107563546:107563736:-	0	-
#Partially deleted in new
chr11	107653435	107654222	ENSG00000110675.12|ELMOD1|pc|chr11:107653435:107654222:+	0	+
#Duplicated in new
chr11	10767050	10767991	ENSG00000198730.7|CTR9|pc|chr11:10767050:10767991:+	0	+
#Partially deleted in new
chr1	11077008	11077443	ENSG00000171824.13|EXOSC10|pc|chr1:11077008:11077443:-	0	-
#Deleted in new
chr11	10783312	10783374	ENSG00000255125.1|AC116535.2|lncRNA|chr11:10783312:10783374:+	0	+
#Deleted in new
chr11	10792094	10792302	ENSG00000255125.1|AC116535.2|lncRNA|chr11:10792094:10792302:+	0	+
#Partially deleted in new
chr11	108073799	108074066	ENSG00000166266.13|CUL5|pc|chr11:108073799:108074066:+	0	+
#Partially deleted in new
chr11	10809296	10809366	ENSG00000246308.1|AC116535.1|lncRNA|chr11:10809296:10809366:+	0	+
#Deleted in new
chr11	108110270	108110394	ENSG00000255467.1|AP002433.1|lncRNA|chr11:108110270:108110394:-	0	-
#Partially deleted in new
chr11	10812073	10815122	ENSG00000236287.7|ZBED5|pc|chr11:10812073:10815122:-	0	-
#Deleted in new
chr11	108121295	108121684	ENSG00000255467.1|AP002433.1|lncRNA|chr11:108121295:108121684:-	0	-
#Deleted in new
chr11	108121515	108121678	ENSG00000075239.13|ACAT1|pc|chr11:108121515:108121678:+	0	+
#Deleted in new
chr11	108121566	108121678	ENSG00000075239.13|ACAT1|pc|chr11:108121566:108121678:+	0	+
#Deleted in new
chr11	108121583	108121678	ENSG00000075239.13|ACAT1|pc|chr11:108121583:108121678:+	0	+
#Deleted in new
chr11	108121750	108121893	ENSG00000075239.13|ACAT1|pc|chr11:108121750:108121893:+	0	+
#Deleted in new
chr11	108121795	108121926	ENSG00000075239.13|ACAT1|pc|chr11:108121795:108121926:+	0	+
#Deleted in new
chr11	108121804	108121926	ENSG00000075239.13|ACAT1|pc|chr11:108121804:108121926:+	0	+
#Deleted in new
chr11	108127885	108127979	ENSG00000075239.13|ACAT1|pc|chr11:108127885:108127979:+	0	+
#Deleted in new
chr11	108128642	108129201	ENSG00000075239.13|ACAT1|pc|chr11:108128642:108129201:+	0	+
#Deleted in new
chr11	108129102	108129201	ENSG00000075239.13|ACAT1|pc|chr11:108129102:108129201:+	0	+
#Deleted in new
chr11	108136069	108136939	ENSG00000075239.13|ACAT1|pc|chr11:108136069:108136939:+	0	+
#Partially deleted in new
chr11	108142436	108143946	ENSG00000075239.13|ACAT1|pc|chr11:108142436:108143946:+	0	+
#Deleted in new
chr11	10820731	10822931	ENSG00000246308.1|AC116535.1|lncRNA|chr11:10820731:10822931:+	0	+
#Deleted in new
chr11	108208420	108208584	ENSG00000149308.16|NPAT|pc|chr11:108208420:108208584:-	0	-
#Deleted in new
chr11	108224782	108224871	ENSG00000149311.18|ATM|pc|chr11:108224782:108224871:+	0	+
#Deleted in new
chr11	108224783	108224871	ENSG00000149311.18|ATM|pc|chr11:108224783:108224871:+	0	+
#Deleted in new
chr11	108225500	108225574	ENSG00000149311.18|ATM|pc|chr11:108225500:108225574:+	0	+
#Deleted in new
chr11	108226163	108226247	ENSG00000149311.18|ATM|pc|chr11:108226163:108226247:+	0	+
#Partially deleted in new
chr11	108229177	108230912	ENSG00000149311.18|ATM|pc|chr11:108229177:108230912:+	0	+
#Deleted in new
chr11	10823103	10823267	ENSG00000236287.7|ZBED5|pc|chr11:10823103:10823267:-	0	-
#Deleted in new
chr11	108231487	108231594	ENSG00000149311.18|ATM|pc|chr11:108231487:108231594:+	0	+
#Deleted in new
chr1	11082533	11082623	ENSG00000171824.13|EXOSC10|pc|chr1:11082533:11082623:-	0	-
#Deleted in new
chr11	10825649	10826582	ENSG00000236287.7|ZBED5|pc|chr11:10825649:10826582:-	0	-
#Partially deleted in new
chr11	108289601	108290667	ENSG00000149311.18|ATM|pc|chr11:108289601:108290667:+	0	+
#Partially deleted in new
chr11	108294926	108295996	ENSG00000149311.18|ATM|pc|chr11:108294926:108295996:+	0	+
#Partially deleted in new
chr11	108336183	108336408	ENSG00000149311.18|ATM|pc|chr11:108336183:108336408:+	0	+
#Deleted in new
chr11	108340158	108340364	ENSG00000166323.12|C11orf65|pc|chr11:108340158:108340364:-	0	-
#Deleted in new
chr11	108365897	108366565	ENSG00000149311.18|ATM|pc|chr11:108365897:108366565:+	0	+
#Deleted in new
chr11	10836983	10837067	ENSG00000236287.7|ZBED5|pc|chr11:10836983:10837067:-	0	-
#Deleted in new
chr11	10838268	10838573	ENSG00000236287.7|ZBED5|pc|chr11:10838268:10838573:-	0	-
#Deleted in new
chr11	108462547	108462640	ENSG00000166323.12|C11orf65|pc|chr11:108462547:108462640:-	0	-
#Deleted in new
chr11	108462547	108462641	ENSG00000166323.12|C11orf65|pc|chr11:108462547:108462641:-	0	-
#Partially deleted in new
chr11	108472104	108474952	ENSG00000178202.12|KDELC2|pc|chr11:108472104:108474952:-	0	-
#Partially deleted in new
chr11	108472111	108474952	ENSG00000178202.12|KDELC2|pc|chr11:108472111:108474952:-	0	-
#Partially deleted in new
chr11	108473074	108474952	ENSG00000178202.12|KDELC2|pc|chr11:108473074:108474952:-	0	-
#Partially deleted in new
chr11	108486737	108486964	ENSG00000178202.12|KDELC2|pc|chr11:108486737:108486964:-	0	-
#Deleted in new
chr11	108552019	108552205	ENSG00000110723.11|EXPH5|pc|chr11:108552019:108552205:-	0	-
#Partially deleted in new
chr11	10858267	10858942	ENSG00000247271.6|ZBED5-AS1|lncRNA|chr11:10858267:10858942:+	0	+
#Deleted in new
chr11	108767313	108767404	ENSG00000178105.9|DDX10|pc|chr11:108767313:108767404:+	0	+
#Deleted in new
chr11	108767936	108768001	ENSG00000178105.9|DDX10|pc|chr11:108767936:108768001:+	0	+
#Deleted in new
chr11	10878380	10878409	ENSG00000247271.6|ZBED5-AS1|lncRNA|chr11:10878380:10878409:+	0	+
#Deleted in new
chr11	10878380	10879276	ENSG00000247271.6|ZBED5-AS1|lncRNA|chr11:10878380:10879276:+	0	+
#Partially deleted in new
chr1	110880236	110880332	ENSG00000143119.12|CD53|pc|chr1:110880236:110880332:+	0	+
#Deleted in new
chr11	10884884	10885124	ENSG00000250041.2|AC069360.1|lncRNA|chr11:10884884:10885124:-	0	-
#Deleted in new
chr11	108860574	108860957	ENSG00000178105.9|DDX10|pc|chr11:108860574:108860957:+	0	+
#Deleted in new
chr11	108868247	108868332	ENSG00000178105.9|DDX10|pc|chr11:108868247:108868332:+	0	+
#Deleted in new
chr11	10906454	10906802	ENSG00000247271.6|ZBED5-AS1|lncRNA|chr11:10906454:10906802:+	0	+
#Deleted in new
chr11	109355084	109355134	ENSG00000255028.5|AP003049.2|lncRNA|chr11:109355084:109355134:-	0	-
#Deleted in new
chr1	110936368	110942353	ENSG00000261654.1|AL360270.2|lncRNA|chr1:110936368:110942353:-	0	-
#Deleted in new
chr1	110943466	110945160	ENSG00000232811.1|AL360270.1|lncRNA|chr1:110943466:110945160:+	0	+
#Deleted in new
chr1	110952	111357	ENSG00000238009.6|AL627309.1|lncRNA|chr1:110952:111357:-	0	-
#Deleted in new
chr1	11095415	11095547	ENSG00000171824.13|EXOSC10|pc|chr1:11095415:11095547:-	0	-
#Deleted in new
chr11	110174879	110175234	ENSG00000137710.14|RDX|pc|chr11:110174879:110175234:-	0	-
#Deleted in new
chr1	11101800	11102051	ENSG00000230337.1|AL109811.2|lncRNA|chr1:11101800:11102051:+	0	+
#Deleted in new
chr1	11101800	11102100	ENSG00000230337.1|AL109811.2|lncRNA|chr1:11101800:11102100:+	0	+
#Deleted in new
chr11	110181791	110181838	ENSG00000137710.14|RDX|pc|chr11:110181791:110181838:-	0	-
#Deleted in new
chr11	110237786	110237886	ENSG00000137710.14|RDX|pc|chr11:110237786:110237886:-	0	-
#Deleted in new
chr11	110272910	110273033	ENSG00000137710.14|RDX|pc|chr11:110272910:110273033:-	0	-
#Deleted in new
chr11	110272910	110273051	ENSG00000137710.14|RDX|pc|chr11:110272910:110273051:-	0	-
#Deleted in new
chr11	110381925	110381986	ENSG00000254416.5|AP000924.1|lncRNA|chr11:110381925:110381986:+	0	+
#Deleted in new
chr11	110406243	110406400	ENSG00000254416.5|AP000924.1|lncRNA|chr11:110406243:110406400:+	0	+
#Deleted in new
chr11	110690971	110691039	ENSG00000137727.12|ARHGAP20|pc|chr11:110690971:110691039:-	0	-
#Partially deleted in new
chr11	111089869	111090368	ENSG00000271390.1|AP003973.2|lncRNA|chr11:111089869:111090368:-	0	-
#Deleted in new
chr11	111097229	111097357	ENSG00000271584.2|LINC02550|lncRNA|chr11:111097229:111097357:-	0	-
#Deleted in new
chr1	11111513	11111753	ENSG00000198793.12|MTOR|pc|chr1:11111513:11111753:-	0	-
#Deleted in new
chr11	11117853	11117949	ENSG00000254401.1|AC111188.1|lncRNA|chr11:11117853:11117949:+	0	+
#Deleted in new
chr11	111179174	111179641	ENSG00000271584.2|LINC02550|lncRNA|chr11:111179174:111179641:-	0	-
#Deleted in new
chr1	111119614	111119681	ENSG00000156171.14|DRAM2|pc|chr1:111119614:111119681:-	0	-
#Deleted in new
chr11	11120523	11120535	ENSG00000254401.1|AC111188.1|lncRNA|chr11:11120523:11120535:+	0	+
#Deleted in new
chr1	111122615	111122643	ENSG00000156171.14|DRAM2|pc|chr1:111122615:111122643:-	0	-
#Partially deleted in new
chr1	111125388	111125650	ENSG00000156171.14|DRAM2|pc|chr1:111125388:111125650:-	0	-
#Deleted in new
chr1	111127982	111128027	ENSG00000156171.14|DRAM2|pc|chr1:111127982:111128027:-	0	-
#Deleted in new
chr1	111139500	111139520	ENSG00000156171.14|DRAM2|pc|chr1:111139500:111139520:-	0	-
#Deleted in new
chr11	111399097	111399151	ENSG00000110777.11|POU2AF1|pc|chr11:111399097:111399151:-	0	-
#Deleted in new
chr11	111399097	111399242	ENSG00000110777.11|POU2AF1|pc|chr11:111399097:111399242:-	0	-
#Deleted in new
chr11	111400984	111401041	ENSG00000110777.11|POU2AF1|pc|chr11:111400984:111401041:-	0	-
#Deleted in new
chr11	111415918	111416040	ENSG00000255428.1|AP002008.3|lncRNA|chr11:111415918:111416040:-	0	-
#Deleted in new
chr11	111524882	111524963	ENSG00000183644.13|C11orf88|pc|chr11:111524882:111524963:+	0	+
#Deleted in new
chr11	111526651	111526755	ENSG00000254980.1|AP002008.1|lncRNA|chr11:111526651:111526755:-	0	-
#Deleted in new
chr11	111768667	111769139	ENSG00000254990.5|AP001781.2|lncRNA|chr11:111768667:111769139:-	0	-
#Deleted in new
chr11	111768856	111769139	ENSG00000254990.5|AP001781.2|lncRNA|chr11:111768856:111769139:-	0	-
#Deleted in new
chr11	111769358	111769452	ENSG00000254990.5|AP001781.2|lncRNA|chr11:111769358:111769452:-	0	-
#Partially deleted in new
chr11	111788440	111788569	ENSG00000086848.14|ALG9|pc|chr11:111788440:111788569:-	0	-
#Deleted in new
chr11	111805093	111805315	ENSG00000086848.14|ALG9|pc|chr11:111805093:111805315:-	0	-
#Deleted in new
chr11	111817213	111817539	ENSG00000254450.1|ALG9-IT1|lncRNA|chr11:111817213:111817539:-	0	-
#Partially deleted in new
chr11	11182326	11183251	ENSG00000254401.1|AC111188.1|lncRNA|chr11:11182326:11183251:+	0	+
#Deleted in new
chr11	111828854	111829212	ENSG00000254450.1|ALG9-IT1|lncRNA|chr11:111828854:111829212:-	0	-
#Deleted in new
chr11	11183362	11183611	ENSG00000254401.1|AC111188.1|lncRNA|chr11:11183362:11183611:+	0	+
#Deleted in new
chr11	111845178	111845391	ENSG00000086848.14|ALG9|pc|chr11:111845178:111845391:-	0	-
#Deleted in new
chr11	111849463	111849790	ENSG00000086848.14|ALG9|pc|chr11:111849463:111849790:-	0	-
#Partially deleted in new
chr11	111883770	111885975	ENSG00000137720.7|C11orf1|pc|chr11:111883770:111885975:+	0	+
#Deleted in new
chr11	112015306	112015525	ENSG00000255334.1|AP000907.3|lncRNA|chr11:112015306:112015525:+	0	+
#Deleted in new
chr11	112016021	112016124	ENSG00000255334.1|AP000907.3|lncRNA|chr11:112016021:112016124:+	0	+
#Deleted in new
chr11	112072738	112072859	ENSG00000150773.10|PIH1D2|pc|chr11:112072738:112072859:-	0	-
#Partially deleted in new
chr11	112088244	112088535	ENSG00000204370.9|SDHD|pc|chr11:112088244:112088535:+	0	+
#Deleted in new
chr11	112091078	112091132	ENSG00000204370.9|SDHD|pc|chr11:112091078:112091132:+	0	+
#Deleted in new
chr11	112093079	112093197	ENSG00000255292.7|SDHD|pc|chr11:112093079:112093197:+	0	+
#Deleted in new
chr11	112093079	112093209	ENSG00000204370.9|SDHD|pc|chr11:112093079:112093209:+	0	+
#Deleted in new
chr11	112107544	112107708	ENSG00000204370.9|SDHD|pc|chr11:112107544:112107708:+	0	+
#Deleted in new
chr11	112119291	112119442	ENSG00000204370.9|SDHD|pc|chr11:112119291:112119442:+	0	+
#Deleted in new
chr11	112119291	112120013	ENSG00000204370.9|SDHD|pc|chr11:112119291:112120013:+	0	+
#Partially deleted in new
chr11	112152998	112153603	ENSG00000150782.11|IL18|pc|chr11:112152998:112153603:-	0	-
#Duplicated in new
chr11	112165196	112165519	ENSG00000254638.1|AP002884.4|lncRNA|chr11:112165196:112165519:-	0	-
#Deleted in new
chr11	112223932	112224699	ENSG00000197580.11|BCO2|pc|chr11:112223932:112224699:+	0	+
#Deleted in new
chr1	111225943	111226028	ENSG00000064886.13|CHI3L2|pc|chr1:111225943:111226028:+	0	+
#Deleted in new
chr1	111227015	111227132	ENSG00000064886.13|CHI3L2|pc|chr1:111227015:111227132:+	0	+
#Deleted in new
chr1	111227067	111227132	ENSG00000064886.13|CHI3L2|pc|chr1:111227067:111227132:+	0	+
#Deleted in new
chr1	111227485	111227769	ENSG00000064886.13|CHI3L2|pc|chr1:111227485:111227769:+	0	+
#Deleted in new
chr1	111227562	111227769	ENSG00000064886.13|CHI3L2|pc|chr1:111227562:111227769:+	0	+
#Deleted in new
chr1	111227609	111227769	ENSG00000064886.13|CHI3L2|pc|chr1:111227609:111227769:+	0	+
#Deleted in new
chr1	111227658	111227769	ENSG00000064886.13|CHI3L2|pc|chr1:111227658:111227769:+	0	+
#Deleted in new
chr1	111227677	111227769	ENSG00000064886.13|CHI3L2|pc|chr1:111227677:111227769:+	0	+
#Deleted in new
chr11	112293726	112293929	ENSG00000250303.3|AP002884.3|lncRNA|chr11:112293726:112293929:+	0	+
#Deleted in new
chr11	112293726	112294116	ENSG00000250303.3|AP002884.3|lncRNA|chr11:112293726:112294116:+	0	+
#Deleted in new
chr1	111229691	111229881	ENSG00000064886.13|CHI3L2|pc|chr1:111229691:111229881:+	0	+
#Deleted in new
chr1	111229705	111229757	ENSG00000064886.13|CHI3L2|pc|chr1:111229705:111229757:+	0	+
#Deleted in new
chr1	111229752	111229881	ENSG00000064886.13|CHI3L2|pc|chr1:111229752:111229881:+	0	+
#Deleted in new
chr1	111229756	111229810	ENSG00000064886.13|CHI3L2|pc|chr1:111229756:111229810:+	0	+
#Deleted in new
chr1	111229777	111229881	ENSG00000064886.13|CHI3L2|pc|chr1:111229777:111229881:+	0	+
#Deleted in new
chr1	111229787	111229881	ENSG00000064886.13|CHI3L2|pc|chr1:111229787:111229881:+	0	+
#Deleted in new
chr1	111229819	111229881	ENSG00000064886.13|CHI3L2|pc|chr1:111229819:111229881:+	0	+
#Deleted in new
chr1	111229851	111229881	ENSG00000064886.13|CHI3L2|pc|chr1:111229851:111229881:+	0	+
#Partially deleted in new
chr1	111231237	111231472	ENSG00000064886.13|CHI3L2|pc|chr1:111231237:111231472:+	0	+
#Deleted in new
chr11	112358102	112358147	ENSG00000250303.3|AP002884.3|lncRNA|chr11:112358102:112358147:+	0	+
#Deleted in new
chr11	112360068	112362534	ENSG00000250303.3|AP002884.3|lncRNA|chr11:112360068:112362534:+	0	+
#Deleted in new
chr1	111239305	111239363	ENSG00000064886.13|CHI3L2|pc|chr1:111239305:111239363:+	0	+
#Partially deleted in new
chr1	111242226	111242634	ENSG00000064886.13|CHI3L2|pc|chr1:111242226:111242634:+	0	+
#Deleted in new
chr1	111243216	111243432	ENSG00000064886.13|CHI3L2|pc|chr1:111243216:111243432:+	0	+
#Deleted in new
chr1	111243216	111243438	ENSG00000064886.13|CHI3L2|pc|chr1:111243216:111243438:+	0	+
#Deleted in new
chr1	111243216	111243439	ENSG00000064886.13|CHI3L2|pc|chr1:111243216:111243439:+	0	+
#Deleted in new
chr1	111243216	111243440	ENSG00000064886.13|CHI3L2|pc|chr1:111243216:111243440:+	0	+
#Deleted in new
chr11	11243688	11243715	ENSG00000255260.1|KC877392.1|lncRNA|chr11:11243688:11243715:-	0	-
#Partially deleted in new
chr11	112484344	112484616	ENSG00000254968.6|AP003063.1|lncRNA|chr11:112484344:112484616:+	0	+
#Deleted in new
chr11	112548246	112548357	ENSG00000255484.2|AP003063.2|lncRNA|chr11:112548246:112548357:-	0	-
#Deleted in new
chr1	111290861	111290950	ENSG00000134216.18|CHIA|pc|chr1:111290861:111290950:+	0	+
#Deleted in new
chr1	111290915	111290950	ENSG00000134216.18|CHIA|pc|chr1:111290915:111290950:+	0	+
#Deleted in new
chr11	113003845	113003856	ENSG00000149294.16|NCAM1|pc|chr11:113003845:113003856:+	0	+
#Deleted in new
chr11	113280490	113280632	ENSG00000255129.5|AP000880.1|lncRNA|chr11:113280490:113280632:-	0	-
#Deleted in new
chr11	113283856	113283990	ENSG00000255129.5|AP000880.1|lncRNA|chr11:113283856:113283990:-	0	-
#Deleted in new
chr11	113329641	113329808	ENSG00000149292.16|TTC12|pc|chr11:113329641:113329808:+	0	+
#Deleted in new
chr11	113364380	113364694	ENSG00000149292.16|TTC12|pc|chr11:113364380:113364694:+	0	+
#Deleted in new
chr11	113368424	113368576	ENSG00000149292.16|TTC12|pc|chr11:113368424:113368576:+	0	+
#Deleted in new
chr11	113368477	113369117	ENSG00000270179.1|AP002840.2|lncRNA|chr11:113368477:113369117:+	0	+
#Deleted in new
chr11	113693603	113693737	ENSG00000166682.10|TMPRSS5|pc|chr11:113693603:113693737:-	0	-
#Deleted in new
chr11	113818076	113818207	ENSG00000256452.1|AP003170.3|lncRNA|chr11:113818076:113818207:+	0	+
#Deleted in new
chr11	113820291	113820358	ENSG00000048028.11|USP28|pc|chr11:113820291:113820358:-	0	-
#Deleted in new
chr11	113820439	113820442	ENSG00000256452.1|AP003170.3|lncRNA|chr11:113820439:113820442:+	0	+
#Deleted in new
chr11	113822434	113822458	ENSG00000256452.1|AP003170.3|lncRNA|chr11:113822434:113822458:+	0	+
#Deleted in new
chr11	113835206	113835327	ENSG00000048028.11|USP28|pc|chr11:113835206:113835327:-	0	-
#Deleted in new
chr11	113977499	113977576	ENSG00000166736.11|HTR3A|pc|chr11:113977499:113977576:+	0	+
#Partially deleted in new
chr11	114186951	114189764	ENSG00000109906.13|ZBTB16|pc|chr11:114186951:114189764:+	0	+
#Deleted in new
chr11	114297362	114297398	ENSG00000166741.7|NNMT|pc|chr11:114297362:114297398:+	0	+
#Deleted in new
chr1	111431045	111433068	ENSG00000260948.1|AL390195.2|lncRNA|chr1:111431045:111433068:-	0	-
#Deleted in new
chr11	114356521	114356571	ENSG00000256947.1|AP002518.2|lncRNA|chr11:114356521:114356571:-	0	-
#Deleted in new
chr11	114360634	114364167	ENSG00000256195.2|AP002518.1|lncRNA|chr11:114360634:114364167:-	0	-
#Partially deleted in new
chr11	114378739	114378990	ENSG00000256195.2|AP002518.1|lncRNA|chr11:114378739:114378990:-	0	-
#Deleted in new
chr11	114413955	114414203	ENSG00000076053.10|RBM7|pc|chr11:114413955:114414203:+	0	+
#Deleted in new
chr11	114431528	114431665	ENSG00000255663.1|AP002373.1|pc|chr11:114431528:114431665:+	0	+
#Deleted in new
chr11	114559797	114559858	ENSG00000095110.7|NXPE1|pc|chr11:114559797:114559858:-	0	-
#Deleted in new
chr11	114559797	114559895	ENSG00000095110.7|NXPE1|pc|chr11:114559797:114559895:-	0	-
#Partially deleted in new
chr1	111460916	111462773	ENSG00000116459.10|ATP5F1|pc|chr1:111460916:111462773:+	0	+
#Deleted in new
chr1	11149269	11149537	ENSG00000225602.5|MTOR-AS1|lncRNA|chr1:11149269:11149537:+	0	+
#Deleted in new
chr1	1115021	1115075	ENSG00000131591.17|C1orf159|pc|chr1:1115021:1115075:-	0	-
#Deleted in new
chr11	115445760	115445836	ENSG00000182985.17|CADM1|pc|chr11:115445760:115445836:-	0	-
#Partially deleted in new
chr11	115532321	115532581	ENSG00000256281.1|AP003174.2|lncRNA|chr11:115532321:115532581:-	0	-
#Deleted in new
chr11	115582296	115582509	ENSG00000255689.1|AP003174.1|lncRNA|chr11:115582296:115582509:+	0	+
#Deleted in new
chr11	115593150	115593194	ENSG00000255689.1|AP003174.1|lncRNA|chr11:115593150:115593194:+	0	+
#Deleted in new
chr11	115600220	115600339	ENSG00000255689.1|AP003174.1|lncRNA|chr11:115600220:115600339:+	0	+
#Deleted in new
chr11	115628569	115628687	ENSG00000255599.1|AP000997.1|lncRNA|chr11:115628569:115628687:+	0	+
#Deleted in new
chr11	11573524	11573782	ENSG00000255462.1|AC104031.1|lncRNA|chr11:11573524:11573782:+	0	+
#Deleted in new
chr1	111599654	111600095	ENSG00000231346.5|LINC01160|lncRNA|chr1:111599654:111600095:-	0	-
#Deleted in new
chr1	111599864	111600095	ENSG00000231346.5|LINC01160|lncRNA|chr1:111599864:111600095:-	0	-
#Deleted in new
chr1	1116059	1116081	ENSG00000131591.17|C1orf159|pc|chr1:1116059:1116081:-	0	-
#Deleted in new
chr1	1116059	1116087	ENSG00000131591.17|C1orf159|pc|chr1:1116059:1116087:-	0	-
#Deleted in new
chr1	1116059	1116089	ENSG00000131591.17|C1orf159|pc|chr1:1116059:1116089:-	0	-
#Deleted in new
chr1	1116059	1116095	ENSG00000131591.17|C1orf159|pc|chr1:1116059:1116095:-	0	-
#Deleted in new
chr1	1116059	1116098	ENSG00000131591.17|C1orf159|pc|chr1:1116059:1116098:-	0	-
#Deleted in new
chr1	1116059	1116243	ENSG00000131591.17|C1orf159|pc|chr1:1116059:1116243:-	0	-
#Deleted in new
chr1	1116059	1116356	ENSG00000131591.17|C1orf159|pc|chr1:1116059:1116356:-	0	-
#Deleted in new
chr1	1116059	1116361	ENSG00000131591.17|C1orf159|pc|chr1:1116059:1116361:-	0	-
#Deleted in new
chr1	111608135	111608318	ENSG00000231346.5|LINC01160|lncRNA|chr1:111608135:111608318:-	0	-
#Deleted in new
chr1	111608135	111608324	ENSG00000231346.5|LINC01160|lncRNA|chr1:111608135:111608324:-	0	-
#Deleted in new
chr1	111608212	111608723	ENSG00000231346.5|LINC01160|lncRNA|chr1:111608212:111608723:-	0	-
#Deleted in new
chr11	116655034	116655189	ENSG00000237937.5|AP000770.1|lncRNA|chr11:116655034:116655189:+	0	+
#Deleted in new
chr11	116773388	116773511	ENSG00000226645.1|AP006216.1|lncRNA|chr11:116773388:116773511:+	0	+
#Partially deleted in new
chr11	116773798	116779059	ENSG00000109917.10|ZPR1|pc|chr11:116773798:116779059:-	0	-
#Deleted in new
chr11	116773909	116774205	ENSG00000226645.1|AP006216.1|lncRNA|chr11:116773909:116774205:+	0	+
#Deleted in new
chr11	116775109	116775333	ENSG00000109917.10|ZPR1|pc|chr11:116775109:116775333:-	0	-
#Deleted in new
chr11	116775502	116775876	ENSG00000109917.10|ZPR1|pc|chr11:116775502:116775876:-	0	-
#Deleted in new
chr1	111680629	111680774	ENSG00000197852.9|FAM212B|pc|chr1:111680629:111680774:-	0	-
#Deleted in new
chr11	116855289	116855729	ENSG00000235910.1|APOA1-AS|lncRNA|chr11:116855289:116855729:+	0	+
#Deleted in new
chr1	111686545	111686683	ENSG00000197852.9|FAM212B|pc|chr1:111686545:111686683:-	0	-
#Deleted in new
chr11	116893844	116893967	ENSG00000160584.15|SIK3|pc|chr11:116893844:116893967:-	0	-
#Deleted in new
chr11	116904745	116905003	ENSG00000160584.15|SIK3|pc|chr11:116904745:116905003:-	0	-
#Deleted in new
chr11	116950132	116950256	ENSG00000160584.15|SIK3|pc|chr11:116950132:116950256:-	0	-
#Deleted in new
chr11	117107946	117108170	ENSG00000224077.1|AP000936.1|lncRNA|chr11:117107946:117108170:+	0	+
#Partially deleted in new
chr11	117159386	117160023	ENSG00000168092.13|PAFAH1B2|pc|chr11:117159386:117160023:+	0	+
#Deleted in new
chr11	117171621	117171746	ENSG00000168092.13|PAFAH1B2|pc|chr11:117171621:117171746:+	0	+
#Partially deleted in new
chr11	117209181	117218464	ENSG00000160613.12|PCSK7|pc|chr11:117209181:117218464:-	0	-
#Split in new
chr11	11725331	11726702	ENSG00000280288.1|AC131935.2|lncRNA|chr11:11725331:11726702:-	0	-
#Deleted in new
chr11	117292210	117292333	ENSG00000278768.1|BACE1-AS|lncRNA|chr11:117292210:117292333:+	0	+
#Deleted in new
chr11	117323869	117324008	ENSG00000250699.1|AP000892.1|lncRNA|chr11:117323869:117324008:-	0	-
#Partially deleted in new
chr11	117328084	117328208	ENSG00000110274.15|CEP164|pc|chr11:117328084:117328208:+	0	+
#Partially deleted in new
chr11	117328102	117328208	ENSG00000110274.15|CEP164|pc|chr11:117328102:117328208:+	0	+
#Deleted in new
chr1	111744374	111744529	ENSG00000227811.2|FAM212B-AS1|lncRNA|chr1:111744374:111744529:+	0	+
#Deleted in new
chr11	117817389	117817525	ENSG00000177103.13|DSCAML1|pc|chr11:117817389:117817525:-	0	-
#Deleted in new
chr11	117836268	117836502	ENSG00000254528.7|AP000757.1|lncRNA|chr11:117836268:117836502:+	0	+
#Deleted in new
chr11	117838606	117838942	ENSG00000254528.7|AP000757.1|lncRNA|chr11:117838606:117838942:+	0	+
#Deleted in new
chr11	117858210	117858286	ENSG00000137726.16|FXYD6|pc|chr11:117858210:117858286:-	0	-
#Partially deleted in new
chr11	117903041	117903451	ENSG00000137747.15|TMPRSS13|pc|chr11:117903041:117903451:-	0	-
#Deleted in new
chr11	118031820	118031969	ENSG00000255274.9|TMPRSS4-AS1|pc|chr11:118031820:118031969:-	0	-
#Partially deleted in new
chr11	118117901	118119839	ENSG00000137648.17|TMPRSS4|pc|chr11:118117901:118119839:+	0	+
#Partially deleted in new
chr11	118117901	118121890	ENSG00000137648.17|TMPRSS4|pc|chr11:118117901:118121890:+	0	+
#Partially deleted in new
chr11	118353118	118355161	ENSG00000160654.9|CD3G|pc|chr11:118353118:118355161:+	0	+
#Deleted in new
chr11	118405656	118405709	ENSG00000167283.7|ATP5L|pc|chr11:118405656:118405709:+	0	+
#Deleted in new
chr11	118546118	118546484	ENSG00000149582.15|TMEM25|pc|chr11:118546118:118546484:+	0	+
#Deleted in new
chr11	118546118	118547280	ENSG00000149582.15|TMEM25|pc|chr11:118546118:118547280:+	0	+
#Partially deleted in new
chr11	118559784	118560422	ENSG00000118096.7|IFT46|pc|chr11:118559784:118560422:-	0	-
#Deleted in new
chr11	118560064	118560418	ENSG00000118096.7|IFT46|pc|chr11:118560064:118560418:-	0	-
#Partially deleted in new
chr11	118615584	118615622	ENSG00000019144.18|PHLDB1|pc|chr11:118615584:118615622:+	0	+
#Deleted in new
chr11	118624791	118624845	ENSG00000019144.18|PHLDB1|pc|chr11:118624791:118624845:+	0	+
#Deleted in new
chr11	118704606	118704838	ENSG00000255422.1|AP002954.1|lncRNA|chr11:118704606:118704838:+	0	+
#Deleted in new
chr11	118708381	118708523	ENSG00000255422.1|AP002954.1|lncRNA|chr11:118708381:118708523:+	0	+
#Deleted in new
chr11	118951203	118951265	ENSG00000110375.2|UPK2|pc|chr11:118951203:118951265:+	0	+
#Deleted in new
chr11	118980228	118980303	ENSG00000176302.12|FOXR1|pc|chr11:118980228:118980303:+	0	+
#Deleted in new
chr11	118994823	118994970	ENSG00000255121.2|AP003392.4|lncRNA|chr11:118994823:118994970:-	0	-
#Partially deleted in new
chr11	118996194	118997276	ENSG00000255121.2|AP003392.4|lncRNA|chr11:118996194:118997276:-	0	-
#Deleted in new
chr11	119001612	119001825	ENSG00000186166.8|CCDC84|pc|chr11:119001612:119001825:+	0	+
#Deleted in new
chr11	119004478	119004893	ENSG00000254428.1|AP003392.1|lncRNA|chr11:119004478:119004893:-	0	-
#Partially deleted in new
chr11	119009533	119010830	ENSG00000186166.8|CCDC84|pc|chr11:119009533:119010830:+	0	+
#Partially deleted in new
chr11	119014065	119015083	ENSG00000186166.8|CCDC84|pc|chr11:119014065:119015083:+	0	+
#Deleted in new
chr11	119014213	119014346	ENSG00000186166.8|CCDC84|pc|chr11:119014213:119014346:+	0	+
#Partially deleted in new
chr11	119023009	119023282	ENSG00000196655.11|TRAPPC4|pc|chr11:119023009:119023282:+	0	+
#Partially deleted in new
chr11	119047169	119047818	ENSG00000149428.18|HYOU1|pc|chr11:119047169:119047818:-	0	-
#Deleted in new
chr11	119067373	119067698	ENSG00000272186.1|AP003392.6|lncRNA|chr11:119067373:119067698:-	0	-
#Deleted in new
chr11	119091860	119091874	ENSG00000256269.7|HMBS|pc|chr11:119091860:119091874:+	0	+
#Partially deleted in new
chr1	111909684	111909716	ENSG00000237556.1|KCND3-AS1|lncRNA|chr1:111909684:111909716:+	0	+
#Deleted in new
chr11	119123732	119124236	ENSG00000172273.12|HINFP|pc|chr11:119123732:119124236:+	0	+
#Deleted in new
chr11	119131113	119131231	ENSG00000172273.12|HINFP|pc|chr11:119131113:119131231:+	0	+
#Partially deleted in new
chr11	119133094	119133898	ENSG00000172273.12|HINFP|pc|chr11:119133094:119133898:+	0	+
#Deleted in new
chr11	119177776	119177956	ENSG00000160703.15|NLRX1|pc|chr11:119177776:119177956:+	0	+
#Deleted in new
chr11	119394980	119395154	ENSG00000245248.7|USP2-AS1|lncRNA|chr11:119394980:119395154:+	0	+
#Deleted in new
chr11	119395031	119395154	ENSG00000245248.7|USP2-AS1|lncRNA|chr11:119395031:119395154:+	0	+
#Deleted in new
chr11	119395541	119395663	ENSG00000245248.7|USP2-AS1|lncRNA|chr11:119395541:119395663:+	0	+
#Deleted in new
chr11	119409500	119409762	ENSG00000245248.7|USP2-AS1|lncRNA|chr11:119409500:119409762:+	0	+
#Deleted in new
chr11	119469808	119469975	ENSG00000245248.7|USP2-AS1|lncRNA|chr11:119469808:119469975:+	0	+
#Deleted in new
chr11	119509113	119509225	ENSG00000245248.7|USP2-AS1|lncRNA|chr11:119509113:119509225:+	0	+
#Deleted in new
chr11	119521680	119522214	ENSG00000245248.7|USP2-AS1|lncRNA|chr11:119521680:119522214:+	0	+
#Deleted in new
chr11	119522657	119522737	ENSG00000245248.7|USP2-AS1|lncRNA|chr11:119522657:119522737:+	0	+
#Deleted in new
chr11	119526361	119526664	ENSG00000245248.7|USP2-AS1|lncRNA|chr11:119526361:119526664:+	0	+
#Deleted in new
chr11	119631247	119631436	ENSG00000254561.3|AP003393.1|lncRNA|chr11:119631247:119631436:+	0	+
#Deleted in new
chr11	119636924	119637028	ENSG00000254561.3|AP003393.1|lncRNA|chr11:119636924:119637028:+	0	+
#Deleted in new
chr11	11978839	11979054	ENSG00000050165.17|DKK3|pc|chr11:11978839:11979054:-	0	-
#Deleted in new
chr11	119987953	119988227	ENSG00000254863.1|AP001360.1|lncRNA|chr11:119987953:119988227:-	0	-
#Deleted in new
chr11	12001674	12001875	ENSG00000050165.17|DKK3|pc|chr11:12001674:12001875:-	0	-
#Partially deleted in new
chr11	120213735	120213969	ENSG00000184232.8|OAF|pc|chr11:120213735:120213969:+	0	+
#Deleted in new
chr11	120236639	120236707	ENSG00000137709.9|POU2F3|pc|chr11:120236639:120236707:+	0	+
#Deleted in new
chr11	120253583	120253654	ENSG00000259541.5|AP001150.1|lncRNA|chr11:120253583:120253654:-	0	-
#Deleted in new
chr11	120254111	120254174	ENSG00000259541.5|AP001150.1|lncRNA|chr11:120254111:120254174:-	0	-
#Partially deleted in new
chr11	120265326	120265440	ENSG00000259541.5|AP001150.1|lncRNA|chr11:120265326:120265440:-	0	-
#Deleted in new
chr11	120265865	120265932	ENSG00000259541.5|AP001150.1|lncRNA|chr11:120265865:120265932:-	0	-
#Deleted in new
chr11	12030874	12030930	ENSG00000254486.1|LINC02547|lncRNA|chr11:12030874:12030930:+	0	+
#Partially deleted in new
chr11	120438447	120440221	ENSG00000196914.8|ARHGEF12|pc|chr11:120438447:120440221:+	0	+
#Partially deleted in new
chr11	120449274	120451724	ENSG00000196914.8|ARHGEF12|pc|chr11:120449274:120451724:+	0	+
#Partially deleted in new
chr11	120575798	120575904	ENSG00000149403.12|GRIK4|pc|chr11:120575798:120575904:+	0	+
#Deleted in new
chr11	12058533	12061785	ENSG00000254486.1|LINC02547|lncRNA|chr11:12058533:12061785:+	0	+
#Deleted in new
chr11	12072190	12073014	ENSG00000254991.1|AC124276.1|lncRNA|chr11:12072190:12073014:+	0	+
#Deleted in new
chr11	121057507	121057614	ENSG00000154114.12|TBCEL|pc|chr11:121057507:121057614:+	0	+
#Deleted in new
chr11	121292758	121292816	ENSG00000109929.9|SC5D|pc|chr11:121292758:121292816:+	0	+
#Deleted in new
chr11	121292770	121292816	ENSG00000109929.9|SC5D|pc|chr11:121292770:121292816:+	0	+
#Deleted in new
chr11	121292851	121293078	ENSG00000109929.9|SC5D|pc|chr11:121292851:121293078:+	0	+
#Deleted in new
chr11	12138387	12138464	ENSG00000133816.13|MICAL2|pc|chr11:12138387:12138464:+	0	+
#Deleted in new
chr11	12138389	12138460	ENSG00000133816.13|MICAL2|pc|chr11:12138389:12138460:+	0	+
#Deleted in new
chr11	12138389	12138464	ENSG00000133816.13|MICAL2|pc|chr11:12138389:12138464:+	0	+
#Deleted in new
chr11	122038026	122038243	ENSG00000255248.7|MIR100HG|lncRNA|chr11:122038026:122038243:-	0	-
#Partially deleted in new
chr11	122064179	122064271	ENSG00000255248.7|MIR100HG|lncRNA|chr11:122064179:122064271:-	0	-
#Partially deleted in new
chr11	122115353	122116215	ENSG00000259571.1|BLID|pc|chr11:122115353:122116215:-	0	-
#Deleted in new
chr11	122116132	122116323	ENSG00000255248.7|MIR100HG|lncRNA|chr11:122116132:122116323:-	0	-
#Deleted in new
chr11	12225584	12225762	ENSG00000133816.13|MICAL2|pc|chr11:12225584:12225762:+	0	+
#Partially deleted in new
chr11	12252531	12255750	ENSG00000133816.13|MICAL2|pc|chr11:12252531:12255750:+	0	+
#Deleted in new
chr11	122539478	122539506	ENSG00000255248.7|MIR100HG|lncRNA|chr11:122539478:122539506:-	0	-
#Deleted in new
chr11	122553938	122554025	ENSG00000255248.7|MIR100HG|lncRNA|chr11:122553938:122554025:-	0	-
#Deleted in new
chr11	122556403	122556721	ENSG00000255248.7|MIR100HG|lncRNA|chr11:122556403:122556721:-	0	-
#Deleted in new
chr11	122709261	122709474	ENSG00000154127.9|UBASH3B|pc|chr11:122709261:122709474:+	0	+
#Partially deleted in new
chr11	122727513	122727599	ENSG00000154127.9|UBASH3B|pc|chr11:122727513:122727599:+	0	+
#Partially deleted in new
chr11	122905171	122905892	ENSG00000109944.10|C11orf63|pc|chr11:122905171:122905892:+	0	+
#Deleted in new
chr11	12303532	12303800	ENSG00000254983.1|AC025300.1|lncRNA|chr11:12303532:12303800:+	0	+
#Duplicated in new
chr11	123057488	123057828	ENSG00000109971.13|HSPA8|pc|chr11:123057488:123057828:-	0	-
#Duplicated in new
chr11	123057488	123057919	ENSG00000109971.13|HSPA8|pc|chr11:123057488:123057919:-	0	-
#Duplicated in new
chr11	123057495	123057919	ENSG00000109971.13|HSPA8|pc|chr11:123057495:123057919:-	0	-
#Duplicated in new
chr11	123057496	123057919	ENSG00000109971.13|HSPA8|pc|chr11:123057496:123057919:-	0	-
#Duplicated in new
chr11	123057497	123057919	ENSG00000109971.13|HSPA8|pc|chr11:123057497:123057919:-	0	-
#Deleted in new
chr11	12308100	12308216	ENSG00000254983.1|AC025300.1|lncRNA|chr11:12308100:12308216:+	0	+
#Deleted in new
chr11	123191414	123191500	ENSG00000254710.1|AP001970.1|lncRNA|chr11:123191414:123191500:+	0	+
#Deleted in new
chr11	123193008	123193092	ENSG00000254710.1|AP001970.1|lncRNA|chr11:123193008:123193092:+	0	+
#Partially deleted in new
chr11	123314320	123314398	ENSG00000254823.1|AP001782.1|lncRNA|chr11:123314320:123314398:-	0	-
#Partially deleted in new
chr11	123458371	123460410	ENSG00000023171.16|GRAMD1B|pc|chr11:123458371:123460410:+	0	+
#Partially deleted in new
chr11	123629186	123629450	ENSG00000166257.8|SCN3B|pc|chr11:123629186:123629450:-	0	-
#Deleted in new
chr11	124026797	124026867	ENSG00000234560.4|OR10G8|pc|chr11:124026797:124026867:+	0	+
#Duplicated in new
chr11	124124236	124124841	ENSG00000110002.15|VWA5A|pc|chr11:124124236:124124841:+	0	+
#Partially deleted in new
chr11	124185258	124188780	ENSG00000197309.3|OR10D3|pc|chr11:124185258:124188780:+	0	+
#Deleted in new
chr11	124247800	124247880	ENSG00000197849.6|OR8G1|pc|chr11:124247800:124247880:+	0	+
#Split in new
chr11	124302830	124310782	ENSG00000196341.3|OR8D1|pc|chr11:124302830:124310782:-	0	-
#Deleted in new
chr11	124314933	124315099	ENSG00000196341.3|OR8D1|pc|chr11:124314933:124315099:-	0	-
#Deleted in new
chr11	124539634	124540719	ENSG00000170953.3|OR8B12|pc|chr11:124539634:124540719:-	0	-
#Partially deleted in new
chr11	124570100	124575764	ENSG00000196119.7|OR8A1|pc|chr11:124570100:124575764:+	0	+
#Partially deleted in new
chr11	124632092	124634802	ENSG00000154144.12|TBRG1|pc|chr11:124632092:124634802:+	0	+
#Partially deleted in new
chr11	124694302	124697518	ENSG00000064199.6|SPA17|pc|chr11:124694302:124697518:+	0	+
#Deleted in new
chr11	124695608	124695707	ENSG00000110013.12|SIAE|pc|chr11:124695608:124695707:-	0	-
#Deleted in new
chr11	124696176	124696686	ENSG00000064199.6|SPA17|pc|chr11:124696176:124696686:+	0	+
#Deleted in new
chr11	12477116	12477221	ENSG00000197702.11|PARVA|pc|chr11:12477116:12477221:+	0	+
#Deleted in new
chr11	124804730	124804848	ENSG00000245498.6|AP000866.1|lncRNA|chr11:124804730:124804848:+	0	+
#Deleted in new
chr11	124805319	124805504	ENSG00000245498.6|AP000866.1|lncRNA|chr11:124805319:124805504:+	0	+
#Deleted in new
chr11	124805319	124806745	ENSG00000245498.6|AP000866.1|lncRNA|chr11:124805319:124806745:+	0	+
#Partially deleted in new
chr11	124832885	124834487	ENSG00000245498.6|AP000866.1|lncRNA|chr11:124832885:124834487:+	0	+
#Deleted in new
chr1	112491010	112491081	ENSG00000134245.17|WNT2B|pc|chr1:112491010:112491081:+	0	+
#Deleted in new
chr11	125037455	125037514	ENSG00000149548.14|CCDC15|pc|chr11:125037455:125037514:+	0	+
#Partially deleted in new
chr11	125111538	125111579	ENSG00000150433.9|TMEM218|pc|chr11:125111538:125111579:-	0	-
#Partially deleted in new
chr11	125111538	125111589	ENSG00000150433.9|TMEM218|pc|chr11:125111538:125111589:-	0	-
#Deleted in new
chr11	125184186	125184385	ENSG00000165495.15|PKNOX2|pc|chr11:125184186:125184385:+	0	+
#Deleted in new
chr11	125189969	125190068	ENSG00000259290.1|AP001007.3|lncRNA|chr11:125189969:125190068:+	0	+
#Partially deleted in new
chr11	125239615	125239728	ENSG00000165495.15|PKNOX2|pc|chr11:125239615:125239728:+	0	+
#Deleted in new
chr11	125266639	125266798	ENSG00000254932.2|AP001007.1|lncRNA|chr11:125266639:125266798:-	0	-
#Partially deleted in new
chr1	112526885	112526952	ENSG00000007341.18|ST7L|pc|chr1:112526885:112526952:-	0	-
#Deleted in new
chr11	12538082	12538544	ENSG00000254847.1|AC009806.1|lncRNA|chr11:12538082:12538544:-	0	-
#Deleted in new
chr11	125469048	125469156	ENSG00000149557.12|FEZ1|pc|chr11:125469048:125469156:-	0	-
#Split in new
chr11	125496507	125499528	ENSG00000255537.1|AP000708.1|lncRNA|chr11:125496507:125499528:+	0	+
#Deleted in new
chr11	125573455	125573574	ENSG00000254671.2|STT3A-AS1|lncRNA|chr11:125573455:125573574:-	0	-
#Deleted in new
chr11	125575802	125575931	ENSG00000149547.14|EI24|pc|chr11:125575802:125575931:+	0	+
#Deleted in new
chr11	125609709	125609736	ENSG00000134910.12|STT3A|pc|chr11:125609709:125609736:+	0	+
#Deleted in new
chr11	125624872	125625215	ENSG00000134910.12|STT3A|pc|chr11:125624872:125625215:+	0	+
#Partially deleted in new
chr11	125675927	125676255	ENSG00000149554.12|CHEK1|pc|chr11:125675927:125676255:+	0	+
#Deleted in new
chr11	125835001	125835900	ENSG00000237353.6|PATE4|pc|chr11:125835001:125835900:+	0	+
#Deleted in new
chr11	125873030	125873685	ENSG00000260209.1|AP000842.3|lncRNA|chr11:125873030:125873685:-	0	-
#Deleted in new
chr11	125873448	125874528	ENSG00000260209.1|AP000842.3|lncRNA|chr11:125873448:125874528:-	0	-
#Deleted in new
chr11	125874245	125874398	ENSG00000260209.1|AP000842.3|lncRNA|chr11:125874245:125874398:-	0	-
#Deleted in new
chr11	125883613	125884017	ENSG00000198331.10|HYLS1|pc|chr11:125883613:125884017:+	0	+
#Partially deleted in new
chr11	125900678	125900844	ENSG00000110060.8|PUS3|pc|chr11:125900678:125900844:-	0	-
#Deleted in new
chr11	125942594	125942652	ENSG00000109832.13|DDX25|pc|chr11:125942594:125942652:+	0	+
#Deleted in new
chr11	125942883	125943085	ENSG00000109832.13|DDX25|pc|chr11:125942883:125943085:+	0	+
#Deleted in new
chr11	125942883	125943684	ENSG00000109832.13|DDX25|pc|chr11:125942883:125943684:+	0	+
#Deleted in new
chr11	125943614	125943702	ENSG00000109832.13|DDX25|pc|chr11:125943614:125943702:+	0	+
#Deleted in new
chr1	112607103	112607597	ENSG00000007341.18|ST7L|pc|chr1:112607103:112607597:-	0	-
#Deleted in new
chr1	112607240	112607597	ENSG00000007341.18|ST7L|pc|chr1:112607240:112607597:-	0	-
#Partially deleted in new
chr11	126205687	126206512	ENSG00000165526.8|RPUSD4|pc|chr11:126205687:126206512:-	0	-
#Deleted in new
chr11	126206253	126206553	ENSG00000165526.8|RPUSD4|pc|chr11:126206253:126206553:-	0	-
#Deleted in new
chr11	126208610	126208872	ENSG00000254694.1|AP001893.1|lncRNA|chr11:126208610:126208872:-	0	-
#Deleted in new
chr11	126208927	126209027	ENSG00000254694.1|AP001893.1|lncRNA|chr11:126208927:126209027:-	0	-
#Partially deleted in new
chr11	126260398	126261484	ENSG00000197798.8|FAM118B|pc|chr11:126260398:126261484:+	0	+
#Deleted in new
chr11	126272477	126272682	ENSG00000110074.10|FOXRED1|pc|chr11:126272477:126272682:+	0	+
#Partially deleted in new
chr11	126294297	126294602	ENSG00000255062.1|AP001318.3|lncRNA|chr11:126294297:126294602:-	0	-
#Partially deleted in new
chr11	126294306	126294656	ENSG00000255062.1|AP001318.3|lncRNA|chr11:126294306:126294656:-	0	-
#Deleted in new
chr11	126296967	126297126	ENSG00000255062.1|AP001318.3|lncRNA|chr11:126296967:126297126:-	0	-
#Deleted in new
chr11	126298257	126298845	ENSG00000150455.13|TIRAP|pc|chr11:126298257:126298845:+	0	+
#Deleted in new
chr11	126350171	126351777	ENSG00000280832.1|GSEC|lncRNA|chr11:126350171:126351777:-	0	-
#Deleted in new
chr11	126375019	126375124	ENSG00000110080.18|ST3GAL4|pc|chr11:126375019:126375124:+	0	+
#Deleted in new
chr11	126393227	126393303	ENSG00000110080.18|ST3GAL4|pc|chr11:126393227:126393303:+	0	+
#Partially deleted in new
chr11	126405586	126405699	ENSG00000110080.18|ST3GAL4|pc|chr11:126405586:126405699:+	0	+
#Deleted in new
chr1	112646754	112646794	ENSG00000116489.12|CAPZA1|pc|chr1:112646754:112646794:+	0	+
#Partially deleted in new
chr1	112649417	112650013	ENSG00000116489.12|CAPZA1|pc|chr1:112649417:112650013:+	0	+
#Deleted in new
chr1	112685034	112685162	ENSG00000155363.18|MOV10|pc|chr1:112685034:112685162:+	0	+
#Partially deleted in new
chr1	112704281	112704440	ENSG00000155366.16|RHOC|pc|chr1:112704281:112704440:-	0	-
#Deleted in new
chr11	127203	127462	ENSG00000230724.9|LINC01001|lncRNA|chr11:127203:127462:-	0	-
#Deleted in new
chr11	127335023	127335145	ENSG00000273409.2|AP003481.1|lncRNA|chr11:127335023:127335145:+	0	+
#Deleted in new
chr11	127336764	127337033	ENSG00000273409.2|AP003481.1|lncRNA|chr11:127336764:127337033:+	0	+
#Deleted in new
chr11	127513	127648	ENSG00000230724.9|LINC01001|lncRNA|chr11:127513:127648:-	0	-
#Partially deleted in new
chr11	128182800	128183554	ENSG00000273415.1|AP000904.1|lncRNA|chr11:128182800:128183554:+	0	+
#Deleted in new
chr1	112820169	112820538	ENSG00000215866.7|LINC01356|lncRNA|chr1:112820169:112820538:-	0	-
#Deleted in new
chr1	112820173	112820541	ENSG00000215866.7|LINC01356|lncRNA|chr1:112820173:112820541:-	0	-
#Deleted in new
chr1	112820289	112820538	ENSG00000215866.7|LINC01356|lncRNA|chr1:112820289:112820538:-	0	-
#Deleted in new
chr1	112823652	112823754	ENSG00000215866.7|LINC01356|lncRNA|chr1:112823652:112823754:-	0	-
#Deleted in new
chr1	112825512	112825672	ENSG00000215866.7|LINC01356|lncRNA|chr1:112825512:112825672:-	0	-
#Deleted in new
chr1	112828476	112828511	ENSG00000215866.7|LINC01356|lncRNA|chr1:112828476:112828511:-	0	-
#Deleted in new
chr1	112840487	112840580	ENSG00000215866.7|LINC01356|lncRNA|chr1:112840487:112840580:-	0	-
#Deleted in new
chr11	12848794	12848879	ENSG00000255067.1|AC013549.3|lncRNA|chr11:12848794:12848879:+	0	+
#Deleted in new
chr1	112848953	112849050	ENSG00000215866.7|LINC01356|lncRNA|chr1:112848953:112849050:-	0	-
#Deleted in new
chr11	12849099	12849433	ENSG00000255067.1|AC013549.3|lncRNA|chr11:12849099:12849433:+	0	+
#Deleted in new
chr1	112849679	112849777	ENSG00000215866.7|LINC01356|lncRNA|chr1:112849679:112849777:-	0	-
#Deleted in new
chr1	112849679	112849815	ENSG00000215866.7|LINC01356|lncRNA|chr1:112849679:112849815:-	0	-
#Deleted in new
chr1	112849679	112850643	ENSG00000215866.7|LINC01356|lncRNA|chr1:112849679:112850643:-	0	-
#Deleted in new
chr1	112850027	112850427	ENSG00000224167.1|AL390729.1|lncRNA|chr1:112850027:112850427:+	0	+
#Deleted in new
chr1	112850075	112850427	ENSG00000224167.1|AL390729.1|lncRNA|chr1:112850075:112850427:+	0	+
#Deleted in new
chr11	128571807	128572314	ENSG00000134954.14|ETS1|pc|chr11:128571807:128572314:-	0	-
#Deleted in new
chr11	128651856	128651936	ENSG00000245008.3|AP001122.1|lncRNA|chr11:128651856:128651936:-	0	-
#Deleted in new
chr1	112876939	112876984	ENSG00000224167.1|AL390729.1|lncRNA|chr1:112876939:112876984:+	0	+
#Deleted in new
chr11	128902419	128902713	ENSG00000174370.9|C11orf45|pc|chr11:128902419:128902713:-	0	-
#Deleted in new
chr11	128902556	128902713	ENSG00000174370.9|C11orf45|pc|chr11:128902556:128902713:-	0	-
#Deleted in new
chr11	128905548	128905697	ENSG00000174370.9|C11orf45|pc|chr11:128905548:128905697:-	0	-
#Deleted in new
chr11	128905909	128906035	ENSG00000174370.9|C11orf45|pc|chr11:128905909:128906035:-	0	-
#Deleted in new
chr11	128934730	128935044	ENSG00000120471.15|TP53AIP1|pc|chr11:128934730:128935044:-	0	-
#Partially deleted in new
chr11	128935369	128935712	ENSG00000120471.15|TP53AIP1|pc|chr11:128935369:128935712:-	0	-
#Deleted in new
chr11	128935590	128935700	ENSG00000120471.15|TP53AIP1|pc|chr11:128935590:128935700:-	0	-
#Deleted in new
chr11	128937677	128937818	ENSG00000120471.15|TP53AIP1|pc|chr11:128937677:128937818:-	0	-
#Deleted in new
chr11	128937677	128937894	ENSG00000120471.15|TP53AIP1|pc|chr11:128937677:128937894:-	0	-
#Deleted in new
chr11	128942793	128942927	ENSG00000120471.15|TP53AIP1|pc|chr11:128942793:128942927:-	0	-
#Deleted in new
chr11	128942793	128943143	ENSG00000120471.15|TP53AIP1|pc|chr11:128942793:128943143:-	0	-
#Deleted in new
chr11	128942793	128943145	ENSG00000120471.15|TP53AIP1|pc|chr11:128942793:128943145:-	0	-
#Deleted in new
chr11	128942793	128943399	ENSG00000120471.15|TP53AIP1|pc|chr11:128942793:128943399:-	0	-
#Deleted in new
chr11	1290914	1291193	ENSG00000078902.15|TOLLIP|pc|chr11:1290914:1291193:-	0	-
#Partially deleted in new
chr11	1291825	1292170	ENSG00000078902.15|TOLLIP|pc|chr11:1291825:1292170:-	0	-
#Deleted in new
chr1	11292048	11292147	ENSG00000120942.13|UBIAD1|pc|chr1:11292048:11292147:+	0	+
#Deleted in new
chr11	12921185	12921276	ENSG00000203258.3|AC013549.1|lncRNA|chr11:12921185:12921276:-	0	-
#Deleted in new
chr11	12922450	12922925	ENSG00000203258.3|AC013549.1|lncRNA|chr11:12922450:12922925:-	0	-
#Deleted in new
chr11	129278	129513	ENSG00000255229.1|AC069287.3|lncRNA|chr11:129278:129513:+	0	+
#Deleted in new
chr1	112935823	112935988	ENSG00000155380.11|SLC16A1|pc|chr1:112935823:112935988:-	0	-
#Deleted in new
chr11	129571	131373	ENSG00000230724.9|LINC01001|lncRNA|chr11:129571:131373:-	0	-
#Partially deleted in new
chr11	129617010	129617269	ENSG00000281097.1|LINC01395|lncRNA|chr11:129617010:129617269:-	0	-
#Partially deleted in new
chr11	12961841	12962763	ENSG00000251381.7|LINC00958|lncRNA|chr11:12961841:12962763:-	0	-
#Deleted in new
chr1	112963971	112964072	ENSG00000226419.7|SLC16A1-AS1|lncRNA|chr1:112963971:112964072:+	0	+
#Deleted in new
chr11	12965107	12965214	ENSG00000251381.7|LINC00958|lncRNA|chr11:12965107:12965214:-	0	-
#Deleted in new
chr11	129815818	129815898	ENSG00000151715.7|TMEM45B|pc|chr11:129815818:129815898:+	0	+
#Deleted in new
chr11	129815849	129815898	ENSG00000151715.7|TMEM45B|pc|chr11:129815849:129815898:+	0	+
#Deleted in new
chr11	129815862	129815898	ENSG00000151715.7|TMEM45B|pc|chr11:129815862:129815898:+	0	+
#Deleted in new
chr11	129815870	129815898	ENSG00000151715.7|TMEM45B|pc|chr11:129815870:129815898:+	0	+
#Deleted in new
chr11	129827023	129827114	ENSG00000151715.7|TMEM45B|pc|chr11:129827023:129827114:+	0	+
#Deleted in new
chr11	12984225	12984292	ENSG00000251381.7|LINC00958|lncRNA|chr11:12984225:12984292:-	0	-
#Deleted in new
chr11	12984225	12984338	ENSG00000251381.7|LINC00958|lncRNA|chr11:12984225:12984338:-	0	-
#Deleted in new
chr11	129850331	129850604	ENSG00000151715.7|TMEM45B|pc|chr11:129850331:129850604:+	0	+
#Deleted in new
chr11	12986039	12986144	ENSG00000251381.7|LINC00958|lncRNA|chr11:12986039:12986144:-	0	-
#Deleted in new
chr11	12988401	12988466	ENSG00000251381.7|LINC00958|lncRNA|chr11:12988401:12988466:-	0	-
#Deleted in new
chr11	12989455	12989537	ENSG00000251381.7|LINC00958|lncRNA|chr11:12989455:12989537:-	0	-
#Deleted in new
chr11	12989455	12989538	ENSG00000251381.7|LINC00958|lncRNA|chr11:12989455:12989538:-	0	-
#Deleted in new
chr11	12989455	12989539	ENSG00000251381.7|LINC00958|lncRNA|chr11:12989455:12989539:-	0	-
#Deleted in new
chr11	12989455	12989546	ENSG00000251381.7|LINC00958|lncRNA|chr11:12989455:12989546:-	0	-
#Deleted in new
chr11	12989455	12989547	ENSG00000251381.7|LINC00958|lncRNA|chr11:12989455:12989547:-	0	-
#Deleted in new
chr11	12989455	12989548	ENSG00000251381.7|LINC00958|lncRNA|chr11:12989455:12989548:-	0	-
#Deleted in new
chr1	113008129	113008360	ENSG00000226419.7|SLC16A1-AS1|lncRNA|chr1:113008129:113008360:+	0	+
#Deleted in new
chr1	113008253	113008360	ENSG00000226419.7|SLC16A1-AS1|lncRNA|chr1:113008253:113008360:+	0	+
#Deleted in new
chr11	130108604	130108983	ENSG00000084234.16|APLP2|pc|chr11:130108604:130108983:+	0	+
#Partially deleted in new
chr11	130238814	130239896	ENSG00000196323.12|ZBTB44|pc|chr11:130238814:130239896:-	0	-
#Deleted in new
chr11	1302583	1302790	ENSG00000078902.15|TOLLIP|pc|chr11:1302583:1302790:-	0	-
#Deleted in new
chr11	130323913	130324061	ENSG00000175773.12|AP002986.1|lncRNA|chr11:130323913:130324061:+	0	+
#Deleted in new
chr11	130333863	130333970	ENSG00000175773.12|AP002986.1|lncRNA|chr11:130333863:130333970:+	0	+
#Deleted in new
chr1	113033672	113033838	ENSG00000226419.7|SLC16A1-AS1|lncRNA|chr1:113033672:113033838:+	0	+
#Deleted in new
chr1	113033674	113033838	ENSG00000226419.7|SLC16A1-AS1|lncRNA|chr1:113033674:113033838:+	0	+
#Partially deleted in new
chr11	130393494	130393596	ENSG00000175773.12|AP002986.1|lncRNA|chr11:130393494:130393596:+	0	+
#Partially deleted in new
chr11	130401787	130403017	ENSG00000175773.12|AP002986.1|lncRNA|chr11:130401787:130403017:+	0	+
#Deleted in new
chr1	113046785	113047051	ENSG00000226419.7|SLC16A1-AS1|lncRNA|chr1:113046785:113047051:+	0	+
#Deleted in new
chr1	113046785	113047055	ENSG00000226419.7|SLC16A1-AS1|lncRNA|chr1:113046785:113047055:+	0	+
#Deleted in new
chr1	113048422	113048561	ENSG00000238198.1|AL357055.3|lncRNA|chr1:113048422:113048561:-	0	-
#Partially deleted in new
chr11	13054614	13055034	ENSG00000255558.1|AC013762.1|lncRNA|chr11:13054614:13055034:-	0	-
#Deleted in new
chr11	130713193	130713300	ENSG00000175728.4|C11orf44|lncRNA|chr11:130713193:130713300:+	0	+
#Deleted in new
chr11	130901810	130901845	ENSG00000120451.10|SNX19|pc|chr11:130901810:130901845:-	0	-
#Partially deleted in new
chr11	1309768	1310707	ENSG00000255153.1|TOLLIP-AS1|lncRNA|chr11:1309768:1310707:+	0	+
#Duplicated in new
chr1	113123874	113127200	ENSG00000198799.11|LRIG2|pc|chr1:113123874:113127200:+	0	+
#Deleted in new
chr11	13134792	13134839	ENSG00000255558.1|AC013762.1|lncRNA|chr11:13134792:13134839:-	0	-
#Deleted in new
chr11	131466	131524	ENSG00000230724.9|LINC01001|lncRNA|chr11:131466:131524:-	0	-
#Deleted in new
chr11	131502758	131502964	ENSG00000237654.5|AP003025.2|lncRNA|chr11:131502758:131502964:-	0	-
#Partially deleted in new
chr11	131537042	131537171	ENSG00000237654.5|AP003025.2|lncRNA|chr11:131537042:131537171:-	0	-
#Deleted in new
chr11	131537070	131537171	ENSG00000237654.5|AP003025.2|lncRNA|chr11:131537070:131537171:-	0	-
#Partially deleted in new
chr11	131539091	131539276	ENSG00000237654.5|AP003025.2|lncRNA|chr11:131539091:131539276:-	0	-
#Deleted in new
chr11	131573545	131573600	ENSG00000236082.2|AP003025.1|lncRNA|chr11:131573545:131573600:-	0	-
#Deleted in new
chr1	11319006	11319093	ENSG00000284646.1|AL031291.1|lncRNA|chr1:11319006:11319093:-	0	-
#Partially deleted in new
chr11	133064696	133068129	ENSG00000279711.1|AP004782.1|lncRNA|chr11:133064696:133068129:+	0	+
#Deleted in new
chr11	13326412	13326467	ENSG00000133794.17|ARNTL|pc|chr11:13326412:13326467:+	0	+
#Partially deleted in new
chr11	133360028	133362192	ENSG00000254896.1|OPCML-IT1|lncRNA|chr11:133360028:133362192:-	0	-
#Deleted in new
chr11	133572	133778	ENSG00000230724.9|LINC01001|lncRNA|chr11:133572:133778:-	0	-
#Deleted in new
chr11	133587	133778	ENSG00000230724.9|LINC01001|lncRNA|chr11:133587:133778:-	0	-
#Deleted in new
chr11	133613	133778	ENSG00000230724.9|LINC01001|lncRNA|chr11:133613:133778:-	0	-
#Deleted in new
chr1	113403654	113404455	ENSG00000081026.18|MAGI3|pc|chr1:113403654:113404455:+	0	+
#Deleted in new
chr11	134126338	134126478	ENSG00000166086.12|JAM3|pc|chr11:134126338:134126478:+	0	+
#Partially deleted in new
chr11	134139639	134139745	ENSG00000166086.12|JAM3|pc|chr11:134139639:134139745:+	0	+
#Deleted in new
chr11	134185928	134186166	ENSG00000255348.1|AP001775.2|lncRNA|chr11:134185928:134186166:+	0	+
#Deleted in new
chr11	134202815	134202905	ENSG00000151503.12|NCAPD3|pc|chr11:134202815:134202905:-	0	-
#Deleted in new
chr11	134236341	134236746	ENSG00000151502.10|VPS26B|pc|chr11:134236341:134236746:+	0	+
#Deleted in new
chr11	134251748	134251895	ENSG00000151500.14|THYN1|pc|chr11:134251748:134251895:-	0	-
#Deleted in new
chr11	134253226	134253248	ENSG00000151500.14|THYN1|pc|chr11:134253226:134253248:-	0	-
#Deleted in new
chr11	134253226	134253301	ENSG00000151500.14|THYN1|pc|chr11:134253226:134253301:-	0	-
#Deleted in new
chr11	134253226	134253350	ENSG00000151500.14|THYN1|pc|chr11:134253226:134253350:-	0	-
#Deleted in new
chr11	134253226	134253353	ENSG00000151500.14|THYN1|pc|chr11:134253226:134253353:-	0	-
#Partially deleted in new
chr11	134253298	134253370	ENSG00000151500.14|THYN1|pc|chr11:134253298:134253370:-	0	-
#Deleted in new
chr11	134274244	134276763	ENSG00000166105.15|GLB1L3|pc|chr11:134274244:134276763:+	0	+
#Deleted in new
chr11	134276740	134276763	ENSG00000166105.15|GLB1L3|pc|chr11:134276740:134276763:+	0	+
#Deleted in new
chr11	134287101	134287327	ENSG00000166105.15|GLB1L3|pc|chr11:134287101:134287327:+	0	+
#Deleted in new
chr11	134287116	134287327	ENSG00000166105.15|GLB1L3|pc|chr11:134287116:134287327:+	0	+
#Deleted in new
chr11	134287139	134287327	ENSG00000166105.15|GLB1L3|pc|chr11:134287139:134287327:+	0	+
#Deleted in new
chr11	134305114	134305308	ENSG00000166105.15|GLB1L3|pc|chr11:134305114:134305308:+	0	+
#Partially deleted in new
chr11	134318876	134319284	ENSG00000166105.15|GLB1L3|pc|chr11:134318876:134319284:+	0	+
#Deleted in new
chr11	134372429	134372598	ENSG00000149328.14|GLB1L2|pc|chr11:134372429:134372598:+	0	+
#Partially deleted in new
chr11	134381644	134381817	ENSG00000109956.12|B3GAT1|pc|chr11:134381644:134381817:-	0	-
#Deleted in new
chr11	134436734	134436784	ENSG00000255545.7|AP004608.1|lncRNA|chr11:134436734:134436784:+	0	+
#Partially deleted in new
chr11	134466339	134467615	ENSG00000255545.7|AP004608.1|lncRNA|chr11:134466339:134467615:+	0	+
#Deleted in new
chr11	134467864	134467987	ENSG00000255545.7|AP004608.1|lncRNA|chr11:134467864:134467987:+	0	+
#Deleted in new
chr11	134485961	134487915	ENSG00000255545.7|AP004608.1|lncRNA|chr11:134485961:134487915:+	0	+
#Partially deleted in new
chr11	134504797	134505040	ENSG00000255545.7|AP004608.1|lncRNA|chr11:134504797:134505040:+	0	+
#Deleted in new
chr11	134563	134796	ENSG00000230724.9|LINC01001|lncRNA|chr11:134563:134796:-	0	-
#Deleted in new
chr11	134563395	134563434	ENSG00000254573.1|AP004550.1|lncRNA|chr11:134563395:134563434:+	0	+
#Deleted in new
chr11	134566218	134566315	ENSG00000254573.1|AP004550.1|lncRNA|chr11:134566218:134566315:+	0	+
#Partially deleted in new
chr11	134671425	134671756	ENSG00000254989.1|AP001999.2|lncRNA|chr11:134671425:134671756:-	0	-
#Deleted in new
chr11	134671966	134672024	ENSG00000254989.1|AP001999.2|lncRNA|chr11:134671966:134672024:-	0	-
#Deleted in new
chr11	134715706	134715922	ENSG00000255344.1|AP001999.3|lncRNA|chr11:134715706:134715922:+	0	+
#Deleted in new
chr11	134735595	134736542	ENSG00000251226.1|AP001999.1|lncRNA|chr11:134735595:134736542:+	0	+
#Deleted in new
chr11	134889	134947	ENSG00000230724.9|LINC01001|lncRNA|chr11:134889:134947:-	0	-
#Deleted in new
chr11	134950707	134951297	ENSG00000255327.1|AP003062.1|lncRNA|chr11:134950707:134951297:+	0	+
#Deleted in new
chr11	134951396	134951568	ENSG00000255327.1|AP003062.1|lncRNA|chr11:134951396:134951568:+	0	+
#Deleted in new
chr11	134985682	134986799	ENSG00000279046.1|AP003062.2|lncRNA|chr11:134985682:134986799:+	0	+
#Deleted in new
chr11	135061780	135061947	ENSG00000255512.1|AP005135.1|lncRNA|chr11:135061780:135061947:-	0	-
#Deleted in new
chr11	135074113	135074371	ENSG00000255512.1|AP005135.1|lncRNA|chr11:135074113:135074371:-	0	-
#Deleted in new
chr11	135075610	135075899	ENSG00000255512.1|AP005135.1|lncRNA|chr11:135075610:135075899:-	0	-
#Deleted in new
chr11	135174	135860	ENSG00000230724.9|LINC01001|lncRNA|chr11:135174:135860:-	0	-
#Deleted in new
chr1	113618531	113618606	ENSG00000081026.18|MAGI3|pc|chr1:113618531:113618606:+	0	+
#Deleted in new
chr11	13670111	13670149	ENSG00000254791.1|FAR1-IT1|lncRNA|chr11:13670111:13670149:+	0	+
#Deleted in new
chr1	1137016	1137110	ENSG00000223823.1|LINC01342|lncRNA|chr1:1137016:1137110:+	0	+
#Partially deleted in new
chr1	113713278	113715212	ENSG00000116793.15|PHTF1|pc|chr1:113713278:113715212:-	0	-
#Partially deleted in new
chr1	113725668	113725961	ENSG00000116793.15|PHTF1|pc|chr1:113725668:113725961:-	0	-
#Partially deleted in new
chr11	13785989	13786113	ENSG00000255411.1|LINC02548|lncRNA|chr11:13785989:13786113:+	0	+
#Deleted in new
chr11	138046	138111	ENSG00000230724.9|LINC01001|lncRNA|chr11:138046:138111:-	0	-
#Partially deleted in new
chr11	13826842	13827280	ENSG00000254927.1|AC027779.1|lncRNA|chr11:13826842:13827280:-	0	-
#Deleted in new
chr1	113829085	113829171	ENSG00000231128.5|AL137856.1|lncRNA|chr1:113829085:113829171:+	0	+
#Partially deleted in new
chr11	13844861	13845006	ENSG00000254930.1|LINC02545|lncRNA|chr11:13844861:13845006:-	0	-
#Deleted in new
chr1	113857982	113858016	ENSG00000226167.1|AP4B1-AS1|lncRNA|chr1:113857982:113858016:+	0	+
#Deleted in new
chr1	113864197	113864382	ENSG00000134242.15|PTPN22|pc|chr1:113864197:113864382:-	0	-
#Deleted in new
chr11	13868636	13868676	ENSG00000254930.1|LINC02545|lncRNA|chr11:13868636:13868676:-	0	-
#Deleted in new
chr11	13870547	13870616	ENSG00000254930.1|LINC02545|lncRNA|chr11:13870547:13870616:-	0	-
#Deleted in new
chr11	138955	138998	ENSG00000230724.9|LINC01001|lncRNA|chr11:138955:138998:-	0	-
#Deleted in new
chr11	138955	139117	ENSG00000230724.9|LINC01001|lncRNA|chr11:138955:139117:-	0	-
#Deleted in new
chr11	138955	139152	ENSG00000230724.9|LINC01001|lncRNA|chr11:138955:139152:-	0	-
#Deleted in new
chr1	113923999	113924332	ENSG00000235527.6|HIPK1-AS1|lncRNA|chr1:113923999:113924332:-	0	-
#Deleted in new
chr1	113924000	113924332	ENSG00000235527.6|HIPK1-AS1|lncRNA|chr1:113924000:113924332:-	0	-
#Deleted in new
chr1	113926627	113926741	ENSG00000235527.6|HIPK1-AS1|lncRNA|chr1:113926627:113926741:-	0	-
#Partially deleted in new
chr1	113926852	113927822	ENSG00000235527.6|HIPK1-AS1|lncRNA|chr1:113926852:113927822:-	0	-
#Deleted in new
chr1	113933139	113933234	ENSG00000163349.21|HIPK1|pc|chr1:113933139:113933234:+	0	+
#Deleted in new
chr11	139488	139612	ENSG00000230724.9|LINC01001|lncRNA|chr11:139488:139612:-	0	-
#Deleted in new
chr1	113951144	113951292	ENSG00000163349.21|HIPK1|pc|chr1:113951144:113951292:+	0	+
#Deleted in new
chr1	113953876	113953932	ENSG00000163349.21|HIPK1|pc|chr1:113953876:113953932:+	0	+
#Deleted in new
chr1	1140824	1141032	ENSG00000223823.1|LINC01342|lncRNA|chr1:1140824:1141032:+	0	+
#Deleted in new
chr11	1409758	1409859	ENSG00000174672.15|BRSK2|pc|chr11:1409758:1409859:+	0	+
#Deleted in new
chr1	114206426	114206685	ENSG00000232895.2|AL121999.1|lncRNA|chr1:114206426:114206685:-	0	-
#Deleted in new
chr11	14273653	14273691	ENSG00000254418.1|SPON1-AS1|lncRNA|chr11:14273653:14273691:-	0	-
#Deleted in new
chr1	1142738	1144056	ENSG00000223823.1|LINC01342|lncRNA|chr1:1142738:1144056:+	0	+
#Deleted in new
chr11	14337000	14337166	ENSG00000133818.13|RRAS2|pc|chr11:14337000:14337166:-	0	-
#Partially deleted in new
chr1	114404325	114405759	ENSG00000197323.11|TRIM33|pc|chr1:114404325:114405759:-	0	-
#Partially deleted in new
chr1	114586735	114587473	ENSG00000175984.14|DENND2C|pc|chr1:114586735:114587473:-	0	-
#Deleted in new
chr1	114645447	114645559	ENSG00000175984.14|DENND2C|pc|chr1:114645447:114645559:-	0	-
#Deleted in new
chr1	114654504	114654761	ENSG00000175984.14|DENND2C|pc|chr1:114654504:114654761:-	0	-
#Split in new
chr11	1471294	1473436	ENSG00000182208.13|MOB2|pc|chr11:1471294:1473436:-	0	-
#Partially deleted in new
chr1	114746542	114746859	ENSG00000009307.15|CSDE1|pc|chr1:114746542:114746859:-	0	-
#Partially deleted in new
chr11	14771936	14776663	ENSG00000152270.8|PDE3B|pc|chr11:14771936:14776663:+	0	+
#Deleted in new
chr1	114778931	114779054	ENSG00000052723.11|SIKE1|pc|chr1:114778931:114779054:-	0	-
#Deleted in new
chr1	114854802	114855018	ENSG00000198765.11|SYCP1|pc|chr1:114854802:114855018:+	0	+
#Deleted in new
chr1	114854867	114855018	ENSG00000198765.11|SYCP1|pc|chr1:114854867:114855018:+	0	+
#Deleted in new
chr1	114855132	114855281	ENSG00000198765.11|SYCP1|pc|chr1:114855132:114855281:+	0	+
#Deleted in new
chr1	114862911	114863110	ENSG00000198765.11|SYCP1|pc|chr1:114862911:114863110:+	0	+
#Deleted in new
chr11	14890431	14890469	ENSG00000186104.10|CYP2R1|pc|chr11:14890431:14890469:-	0	-
#Deleted in new
chr11	14890431	14890531	ENSG00000186104.10|CYP2R1|pc|chr11:14890431:14890531:-	0	-
#Deleted in new
chr11	14890899	14891651	ENSG00000186104.10|CYP2R1|pc|chr11:14890899:14891651:-	0	-
#Deleted in new
chr11	14891152	14891640	ENSG00000186104.10|CYP2R1|pc|chr11:14891152:14891640:-	0	-
#Deleted in new
chr11	14891152	14891662	ENSG00000186104.10|CYP2R1|pc|chr11:14891152:14891662:-	0	-
#Deleted in new
chr11	14891363	14891492	ENSG00000186104.10|CYP2R1|pc|chr11:14891363:14891492:-	0	-
#Deleted in new
chr11	14891363	14891530	ENSG00000186104.10|CYP2R1|pc|chr11:14891363:14891530:-	0	-
#Partially deleted in new
chr11	14904996	14905469	ENSG00000175868.13|CALCB|pc|chr11:14904996:14905469:+	0	+
#Deleted in new
chr1	114910078	114910113	ENSG00000198765.11|SYCP1|pc|chr1:114910078:114910113:+	0	+
#Deleted in new
chr11	14913386	14913476	ENSG00000175868.13|CALCB|pc|chr11:14913386:14913476:+	0	+
#Deleted in new
chr11	1501076	1501247	ENSG00000182208.13|MOB2|pc|chr11:1501076:1501247:-	0	-
#Deleted in new
chr1	115102247	115102658	ENSG00000233730.1|LINC01765|lncRNA|chr1:115102247:115102658:+	0	+
#Deleted in new
chr11	15184417	15184522	ENSG00000188487.11|INSC|pc|chr11:15184417:15184522:+	0	+
#Deleted in new
chr11	15188187	15188334	ENSG00000188487.11|INSC|pc|chr11:15188187:15188334:+	0	+
#Deleted in new
chr11	15552854	15552913	ENSG00000254946.1|AC073172.2|lncRNA|chr11:15552854:15552913:+	0	+
#Deleted in new
chr11	15557217	15557262	ENSG00000254946.1|AC073172.2|lncRNA|chr11:15557217:15557262:+	0	+
#Partially deleted in new
chr11	15561877	15562228	ENSG00000254946.1|AC073172.2|lncRNA|chr11:15561877:15562228:+	0	+
#Deleted in new
chr11	15589080	15589250	ENSG00000254789.2|AC073172.1|lncRNA|chr11:15589080:15589250:-	0	-
#Deleted in new
chr11	15643884	15644035	ENSG00000254695.1|AC087379.2|lncRNA|chr11:15643884:15644035:+	0	+
#Deleted in new
chr11	15701962	15702183	ENSG00000254645.1|AC087379.1|lncRNA|chr11:15701962:15702183:-	0	-
#Deleted in new
chr11	15702281	15702342	ENSG00000254645.1|AC087379.1|lncRNA|chr11:15702281:15702342:-	0	-
#Deleted in new
chr11	15705174	15705368	ENSG00000254695.1|AC087379.2|lncRNA|chr11:15705174:15705368:+	0	+
#Deleted in new
chr11	15714335	15714378	ENSG00000254645.1|AC087379.1|lncRNA|chr11:15714335:15714378:-	0	-
#Deleted in new
chr11	15716120	15716278	ENSG00000254645.1|AC087379.1|lncRNA|chr11:15716120:15716278:-	0	-
#Deleted in new
chr1	115732113	115732208	ENSG00000118729.11|CASQ2|pc|chr1:115732113:115732208:-	0	-
#Deleted in new
chr1	115919349	115919559	ENSG00000228127.2|LINC01649|lncRNA|chr1:115919349:115919559:+	0	+
#Deleted in new
chr1	115919387	115919559	ENSG00000228127.2|LINC01649|lncRNA|chr1:115919387:115919559:+	0	+
#Deleted in new
chr11	15927231	15927443	ENSG00000254661.2|AC009869.1|lncRNA|chr11:15927231:15927443:+	0	+
#Deleted in new
chr1	115931314	115931561	ENSG00000228127.2|LINC01649|lncRNA|chr1:115931314:115931561:+	0	+
#Deleted in new
chr1	11609530	11610113	ENSG00000235643.1|LINC01647|lncRNA|chr1:11609530:11610113:+	0	+
#Deleted in new
chr1	11611842	11611978	ENSG00000235643.1|LINC01647|lncRNA|chr1:11611842:11611978:+	0	+
#Deleted in new
chr1	11612789	11613355	ENSG00000235643.1|LINC01647|lncRNA|chr1:11612789:11613355:+	0	+
#Deleted in new
chr1	11623557	11623610	ENSG00000284708.1|AL031731.1|lncRNA|chr1:11623557:11623610:+	0	+
#Deleted in new
chr11	16252372	16252536	ENSG00000110693.17|SOX6|pc|chr11:16252372:16252536:-	0	-
#Deleted in new
chr11	16269943	16270068	ENSG00000110693.17|SOX6|pc|chr11:16269943:16270068:-	0	-
#Deleted in new
chr1	11637017	11637669	ENSG00000116661.10|FBXO2|pc|chr1:11637017:11637669:-	0	-
#Partially deleted in new
chr11	16408697	16408884	ENSG00000110693.17|SOX6|pc|chr11:16408697:16408884:-	0	-
#Deleted in new
chr1	116411260	116411315	ENSG00000203865.9|ATP1A1-AS1|lncRNA|chr1:116411260:116411315:-	0	-
#Deleted in new
chr1	116418458	116418536	ENSG00000203865.9|ATP1A1-AS1|lncRNA|chr1:116418458:116418536:-	0	-
#Deleted in new
chr1	116418458	116418564	ENSG00000203865.9|ATP1A1-AS1|lncRNA|chr1:116418458:116418564:-	0	-
#Deleted in new
chr1	116418458	116418575	ENSG00000203865.9|ATP1A1-AS1|lncRNA|chr1:116418458:116418575:-	0	-
#Deleted in new
chr1	116418458	116418622	ENSG00000203865.9|ATP1A1-AS1|lncRNA|chr1:116418458:116418622:-	0	-
#Deleted in new
chr1	116428381	116428494	ENSG00000233154.5|LINC01762|lncRNA|chr1:116428381:116428494:-	0	-
#Deleted in new
chr1	116429048	116429280	ENSG00000230381.2|AL136376.1|lncRNA|chr1:116429048:116429280:-	0	-
#Deleted in new
chr1	11645049	11645205	ENSG00000116661.10|FBXO2|pc|chr1:11645049:11645205:-	0	-
#Deleted in new
chr1	116455064	116455215	ENSG00000233154.5|LINC01762|lncRNA|chr1:116455064:116455215:-	0	-
#Deleted in new
chr1	116474233	116474338	ENSG00000233154.5|LINC01762|lncRNA|chr1:116474233:116474338:-	0	-
#Deleted in new
chr1	116514534	116514822	ENSG00000116815.15|CD58|pc|chr1:116514534:116514822:-	0	-
#Deleted in new
chr1	116514738	116514822	ENSG00000116815.15|CD58|pc|chr1:116514738:116514822:-	0	-
#Deleted in new
chr1	116518699	116519267	ENSG00000116815.15|CD58|pc|chr1:116518699:116519267:-	0	-
#Deleted in new
chr1	116519230	116519267	ENSG00000116815.15|CD58|pc|chr1:116519230:116519267:-	0	-
#Deleted in new
chr1	116519230	116519302	ENSG00000116815.15|CD58|pc|chr1:116519230:116519302:-	0	-
#Deleted in new
chr1	116521786	116521983	ENSG00000116815.15|CD58|pc|chr1:116521786:116521983:-	0	-
#Deleted in new
chr1	116521905	116521983	ENSG00000116815.15|CD58|pc|chr1:116521905:116521983:-	0	-
#Deleted in new
chr1	116535964	116536228	ENSG00000116815.15|CD58|pc|chr1:116535964:116536228:-	0	-
#Deleted in new
chr1	116544310	116544590	ENSG00000116815.15|CD58|pc|chr1:116544310:116544590:-	0	-
#Deleted in new
chr1	116544310	116544604	ENSG00000116815.15|CD58|pc|chr1:116544310:116544604:-	0	-
#Deleted in new
chr11	16567326	16567378	ENSG00000110693.17|SOX6|pc|chr11:16567326:16567378:-	0	-
#Deleted in new
chr1	116570902	116570984	ENSG00000116815.15|CD58|pc|chr1:116570902:116570984:-	0	-
#Deleted in new
chr1	116570902	116571026	ENSG00000116815.15|CD58|pc|chr1:116570902:116571026:-	0	-
#Deleted in new
chr1	116570902	116571039	ENSG00000116815.15|CD58|pc|chr1:116570902:116571039:-	0	-
#Deleted in new
chr11	1662583	1663138	ENSG00000231487.1|AP006285.2|lncRNA|chr11:1662583:1663138:-	0	-
#Deleted in new
chr1	11662624	11662731	ENSG00000132879.13|FBXO44|pc|chr1:11662624:11662731:+	0	+
#Deleted in new
chr1	11662624	11663117	ENSG00000132879.13|FBXO44|pc|chr1:11662624:11663117:+	0	+
#Deleted in new
chr1	11662851	11662928	ENSG00000132879.13|FBXO44|pc|chr1:11662851:11662928:+	0	+
#Deleted in new
chr1	11663141	11663324	ENSG00000132879.13|FBXO44|pc|chr1:11663141:11663324:+	0	+
#Deleted in new
chr11	1663310	1663343	ENSG00000231487.1|AP006285.2|lncRNA|chr11:1663310:1663343:-	0	-
#Partially deleted in new
chr1	11664485	11664735	ENSG00000116663.10|FBXO6|pc|chr1:11664485:11664735:+	0	+
#Deleted in new
chr11	16645988	16646309	ENSG00000110696.9|C11orf58|pc|chr11:16645988:16646309:+	0	+
#Deleted in new
chr11	1665596	1665764	ENSG00000205866.3|FAM99A|lncRNA|chr11:1665596:1665764:+	0	+
#Deleted in new
chr1	116705948	116706004	ENSG00000203864.3|C1orf137|lncRNA|chr1:116705948:116706004:+	0	+
#Partially deleted in new
chr11	16748096	16748591	ENSG00000110696.9|C11orf58|pc|chr11:16748096:16748591:+	0	+
#Partially deleted in new
chr11	16749113	16752894	ENSG00000110696.9|C11orf58|pc|chr11:16749113:16752894:+	0	+
#Deleted in new
chr11	16753883	16754035	ENSG00000110696.9|C11orf58|pc|chr11:16753883:16754035:+	0	+
#Deleted in new
chr11	16756815	16756881	ENSG00000110696.9|C11orf58|pc|chr11:16756815:16756881:+	0	+
#Deleted in new
chr11	167783	167884	ENSG00000177951.17|BET1L|pc|chr11:167783:167884:-	0	-
#Deleted in new
chr11	1685437	1685629	ENSG00000205865.4|FAM99B|lncRNA|chr11:1685437:1685629:-	0	-
#Deleted in new
chr11	1688296	1688329	ENSG00000227306.1|AP006285.1|lncRNA|chr11:1688296:1688329:+	0	+
#Deleted in new
chr11	1688502	1689056	ENSG00000227306.1|AP006285.1|lncRNA|chr11:1688502:1689056:+	0	+
#Deleted in new
chr1	1169356	1170343	ENSG00000272141.1|AL390719.2|lncRNA|chr1:1169356:1170343:+	0	+
#Deleted in new
chr1	117036155	117036476	ENSG00000134256.12|CD101|pc|chr1:117036155:117036476:+	0	+
#Deleted in new
chr1	117036167	117036356	ENSG00000134256.12|CD101|pc|chr1:117036167:117036356:+	0	+
#Deleted in new
chr1	117036198	117036417	ENSG00000134256.12|CD101|pc|chr1:117036198:117036417:+	0	+
#Deleted in new
chr11	17076442	17076547	ENSG00000110700.6|RPS13|pc|chr11:17076442:17076547:-	0	-
#Partially deleted in new
chr11	17076708	17077246	ENSG00000110700.6|RPS13|pc|chr11:17076708:17077246:-	0	-
#Partially deleted in new
chr11	17076824	17077246	ENSG00000110700.6|RPS13|pc|chr11:17076824:17077246:-	0	-
#Deleted in new
chr11	17141321	17141381	ENSG00000011405.13|PIK3C2A|pc|chr11:17141321:17141381:-	0	-
#Deleted in new
chr11	171597	171716	ENSG00000255229.1|AC069287.3|lncRNA|chr11:171597:171716:+	0	+
#Deleted in new
chr1	117173186	117173266	ENSG00000134258.16|VTCN1|pc|chr1:117173186:117173266:-	0	-
#Deleted in new
chr11	17204306	17204375	ENSG00000011405.13|PIK3C2A|pc|chr11:17204306:17204375:-	0	-
#Deleted in new
chr11	17260355	17260501	ENSG00000070081.15|NUCB2|pc|chr11:17260355:17260501:+	0	+
#Partially deleted in new
chr11	17260536	17261465	ENSG00000070081.15|NUCB2|pc|chr11:17260536:17261465:+	0	+
#Deleted in new
chr11	17267587	17267681	ENSG00000070081.15|NUCB2|pc|chr11:17267587:17267681:+	0	+
#Deleted in new
chr11	17275612	17275909	ENSG00000070081.15|NUCB2|pc|chr11:17275612:17275909:+	0	+
#Deleted in new
chr11	17275616	17275913	ENSG00000070081.15|NUCB2|pc|chr11:17275616:17275913:+	0	+
#Partially deleted in new
chr11	17276007	17276203	ENSG00000070081.15|NUCB2|pc|chr11:17276007:17276203:+	0	+
#Partially deleted in new
chr11	17276010	17276203	ENSG00000070081.15|NUCB2|pc|chr11:17276010:17276203:+	0	+
#Partially deleted in new
chr11	17278361	17278537	ENSG00000070081.15|NUCB2|pc|chr11:17278361:17278537:+	0	+
#Deleted in new
chr11	17282788	17282870	ENSG00000070081.15|NUCB2|pc|chr11:17282788:17282870:+	0	+
#Deleted in new
chr11	17282788	17282943	ENSG00000070081.15|NUCB2|pc|chr11:17282788:17282943:+	0	+
#Partially deleted in new
chr11	17291239	17291365	ENSG00000070081.15|NUCB2|pc|chr11:17291239:17291365:+	0	+
#Partially deleted in new
chr1	1173055	1176396	ENSG00000205231.1|TTLL10-AS1|lncRNA|chr1:1173055:1176396:-	0	-
#Deleted in new
chr11	17317583	17317706	ENSG00000070081.15|NUCB2|pc|chr11:17317583:17317706:+	0	+
#Deleted in new
chr1	117321123	117321336	ENSG00000235202.1|LINC01525|lncRNA|chr1:117321123:117321336:+	0	+
#Partially deleted in new
chr11	1732409	1735429	ENSG00000244242.1|IFITM10|pc|chr11:1732409:1735429:-	0	-
#Deleted in new
chr11	17337347	17337534	ENSG00000070081.15|NUCB2|pc|chr11:17337347:17337534:+	0	+
#Deleted in new
chr11	17349344	17349974	ENSG00000070081.15|NUCB2|pc|chr11:17349344:17349974:+	0	+
#Deleted in new
chr11	17351725	17352039	ENSG00000188211.8|NCR3LG1|pc|chr11:17351725:17352039:+	0	+
#Deleted in new
chr11	17351898	17352039	ENSG00000188211.8|NCR3LG1|pc|chr11:17351898:17352039:+	0	+
#Deleted in new
chr11	17367008	17367347	ENSG00000188211.8|NCR3LG1|pc|chr11:17367008:17367347:+	0	+
#Deleted in new
chr11	17368866	17368964	ENSG00000188211.8|NCR3LG1|pc|chr11:17368866:17368964:+	0	+
#Deleted in new
chr11	17372005	17373474	ENSG00000188211.8|NCR3LG1|pc|chr11:17372005:17373474:+	0	+
#Deleted in new
chr11	17372005	17377341	ENSG00000188211.8|NCR3LG1|pc|chr11:17372005:17377341:+	0	+
#Deleted in new
chr11	17373623	17373654	ENSG00000188211.8|NCR3LG1|pc|chr11:17373623:17373654:+	0	+
#Deleted in new
chr1	11744532	11744568	ENSG00000177674.15|AGTRAP|pc|chr1:11744532:11744568:+	0	+
#Deleted in new
chr1	117514848	117515939	ENSG00000198162.12|MAN1A2|pc|chr1:117514848:117515939:+	0	+
#Deleted in new
chr11	1755235	1755247	ENSG00000117984.13|CTSD|pc|chr11:1755235:1755247:-	0	-
#Deleted in new
chr1	117596831	117596994	ENSG00000236866.5|AL157902.1|lncRNA|chr1:117596831:117596994:-	0	-
#Partially deleted in new
chr11	17638748	17638934	ENSG00000188162.10|OTOG|pc|chr11:17638748:17638934:+	0	+
#Deleted in new
chr11	1764519	1764573	ENSG00000117984.13|CTSD|pc|chr11:1764519:1764573:-	0	-
#Deleted in new
chr1	11771523	11771636	ENSG00000215910.7|C1orf167|pc|chr1:11771523:11771636:+	0	+
#Deleted in new
chr1	11772081	11772259	ENSG00000215910.7|C1orf167|pc|chr1:11772081:11772259:+	0	+
#Deleted in new
chr1	11772121	11772259	ENSG00000215910.7|C1orf167|pc|chr1:11772121:11772259:+	0	+
#Deleted in new
chr1	11777076	11778284	ENSG00000177553.6|AL953897.1|lncRNA|chr1:11777076:11778284:-	0	-
#Deleted in new
chr1	11777128	11778310	ENSG00000215910.7|C1orf167|pc|chr1:11777128:11778310:+	0	+
#Deleted in new
chr11	17853542	17853678	ENSG00000129159.7|KCNC1|pc|chr11:17853542:17853678:+	0	+
#Deleted in new
chr11	17853542	17853730	ENSG00000129159.7|KCNC1|pc|chr11:17853542:17853730:+	0	+
#Deleted in new
chr11	17853542	17854007	ENSG00000129159.7|KCNC1|pc|chr11:17853542:17854007:+	0	+
#Deleted in new
chr11	17866790	17866864	ENSG00000129158.10|SERGEF|pc|chr11:17866790:17866864:-	0	-
#Deleted in new
chr1	11791636	11791745	ENSG00000177000.11|MTHFR|pc|chr1:11791636:11791745:-	0	-
#Partially deleted in new
chr1	117959291	117966542	ENSG00000065183.15|WDR3|pc|chr1:117959291:117966542:+	0	+
#Deleted in new
chr1	117964680	117964741	ENSG00000155761.13|SPAG17|pc|chr1:117964680:117964741:-	0	-
#Deleted in new
chr1	117964680	117964810	ENSG00000155761.13|SPAG17|pc|chr1:117964680:117964810:-	0	-
#Deleted in new
chr1	117966172	117966225	ENSG00000155761.13|SPAG17|pc|chr1:117966172:117966225:-	0	-
#Deleted in new
chr11	17999493	17999572	ENSG00000129158.10|SERGEF|pc|chr11:17999493:17999572:-	0	-
#Deleted in new
chr11	17999545	17999572	ENSG00000129158.10|SERGEF|pc|chr11:17999545:17999572:-	0	-
#Deleted in new
chr11	180208	180404	ENSG00000177951.17|BET1L|pc|chr11:180208:180404:-	0	-
#Deleted in new
chr11	18042363	18042426	ENSG00000129167.9|TPH1|pc|chr11:18042363:18042426:-	0	-
#Deleted in new
chr11	18120954	18121164	ENSG00000179826.6|MRGPRX3|pc|chr11:18120954:18121164:+	0	+
#Deleted in new
chr11	18140185	18140611	ENSG00000255470.1|AC090099.4|lncRNA|chr11:18140185:18140611:-	0	-
#Deleted in new
chr1	1181740	1181815	ENSG00000162571.13|TTLL10|pc|chr1:1181740:1181815:+	0	+
#Duplicated in new
chr11	18188894	18189495	ENSG00000255470.1|AC090099.4|lncRNA|chr11:18188894:18189495:-	0	-
#Deleted in new
chr1	11820361	11820779	ENSG00000011021.21|CLCN6|pc|chr1:11820361:11820779:+	0	+
#Deleted in new
chr11	18239222	18239969	ENSG00000134339.8|SAA2|pc|chr11:18239222:18239969:-	0	-
#Deleted in new
chr11	18240202	18240287	ENSG00000134339.8|SAA2|pc|chr11:18240202:18240287:-	0	-
#Deleted in new
chr11	18242138	18242819	ENSG00000134339.8|SAA2|pc|chr11:18242138:18242819:-	0	-
#Deleted in new
chr11	18248455	18248516	ENSG00000134339.8|SAA2|pc|chr11:18248455:18248516:-	0	-
#Partially deleted in new
chr11	18248455	18248635	ENSG00000134339.8|SAA2|pc|chr11:18248455:18248635:-	0	-
#Partially deleted in new
chr11	18266263	18266443	ENSG00000173432.10|SAA1|pc|chr11:18266263:18266443:+	0	+
#Deleted in new
chr11	18266382	18266443	ENSG00000173432.10|SAA1|pc|chr11:18266382:18266443:+	0	+
#Deleted in new
chr11	18280508	18280642	ENSG00000110756.17|HPS5|pc|chr11:18280508:18280642:-	0	-
#Deleted in new
chr1	11829848	11830270	ENSG00000011021.21|CLCN6|pc|chr1:11829848:11830270:+	0	+
#Deleted in new
chr11	18314403	18314519	ENSG00000110756.17|HPS5|pc|chr11:18314403:18314519:-	0	-
#Deleted in new
chr11	18324235	18324296	ENSG00000110768.11|GTF2H1|pc|chr11:18324235:18324296:+	0	+
#Partially deleted in new
chr11	18347103	18347715	ENSG00000110768.11|GTF2H1|pc|chr11:18347103:18347715:+	0	+
#Partially deleted in new
chr11	18398629	18399548	ENSG00000134333.13|LDHA|pc|chr11:18398629:18399548:+	0	+
#Deleted in new
chr11	18398797	18398988	ENSG00000134333.13|LDHA|pc|chr11:18398797:18398988:+	0	+
#Deleted in new
chr11	18398865	18398988	ENSG00000134333.13|LDHA|pc|chr11:18398865:18398988:+	0	+
#Partially deleted in new
chr11	18399430	18400360	ENSG00000134333.13|LDHA|pc|chr11:18399430:18400360:+	0	+
#Partially deleted in new
chr11	18399725	18401010	ENSG00000134333.13|LDHA|pc|chr11:18399725:18401010:+	0	+
#Deleted in new
chr11	18400629	18400745	ENSG00000134333.13|LDHA|pc|chr11:18400629:18400745:+	0	+
#Duplicated in new
chr11	18402534	18403013	ENSG00000134333.13|LDHA|pc|chr11:18402534:18403013:+	0	+
#Deleted in new
chr11	18406651	18406731	ENSG00000256006.1|AC084117.1|lncRNA|chr11:18406651:18406731:+	0	+
#Deleted in new
chr11	18412306	18412408	ENSG00000166796.11|LDHC|pc|chr11:18412306:18412408:+	0	+
#Deleted in new
chr11	18412322	18412408	ENSG00000166796.11|LDHC|pc|chr11:18412322:18412408:+	0	+
#Deleted in new
chr11	18412330	18412462	ENSG00000166796.11|LDHC|pc|chr11:18412330:18412462:+	0	+
#Deleted in new
chr11	18412359	18412408	ENSG00000166796.11|LDHC|pc|chr11:18412359:18412408:+	0	+
#Deleted in new
chr1	11843703	11844073	ENSG00000242349.5|NPPA-AS1|lncRNA|chr1:11843703:11844073:+	0	+
#Deleted in new
chr1	11843860	11844073	ENSG00000242349.5|NPPA-AS1|lncRNA|chr1:11843860:11844073:+	0	+
#Partially deleted in new
chr11	18450962	18452058	ENSG00000166796.11|LDHC|pc|chr11:18450962:18452058:+	0	+
#Split in new
chr11	18455883	18456806	ENSG00000166800.9|LDHAL6A|pc|chr11:18455883:18456806:+	0	+
#Partially deleted in new
chr11	18468335	18469218	ENSG00000074319.12|TSG101|pc|chr11:18468335:18469218:-	0	-
#Partially deleted in new
chr11	18478705	18479600	ENSG00000166800.9|LDHAL6A|pc|chr11:18478705:18479600:+	0	+
#Deleted in new
chr11	18479902	18480046	ENSG00000074319.12|TSG101|pc|chr11:18479902:18480046:-	0	-
#Partially deleted in new
chr1	1184968	1185864	ENSG00000162571.13|TTLL10|pc|chr1:1184968:1185864:+	0	+
#Deleted in new
chr11	18525660	18525702	ENSG00000074319.12|TSG101|pc|chr11:18525660:18525702:-	0	-
#Deleted in new
chr11	18563645	18564001	ENSG00000151116.16|UEVLD|pc|chr11:18563645:18564001:-	0	-
#Deleted in new
chr11	18570620	18570738	ENSG00000151116.16|UEVLD|pc|chr11:18570620:18570738:-	0	-
#Deleted in new
chr11	18587676	18587795	ENSG00000151116.16|UEVLD|pc|chr11:18587676:18587795:-	0	-
#Partially deleted in new
chr11	18588780	18588995	ENSG00000247595.4|SPTY2D1-AS1|pc|chr11:18588780:18588995:+	0	+
#Deleted in new
chr11	185901	186136	ENSG00000255229.1|AC069287.3|lncRNA|chr11:185901:186136:+	0	+
#Partially deleted in new
chr11	18601473	18601764	ENSG00000247595.4|SPTY2D1-AS1|pc|chr11:18601473:18601764:+	0	+
#Deleted in new
chr11	1902646	1902724	ENSG00000229671.1|LINC01150|lncRNA|chr11:1902646:1902724:+	0	+
#Deleted in new
chr11	1903103	1903256	ENSG00000229671.1|LINC01150|lncRNA|chr11:1903103:1903256:+	0	+
#Deleted in new
chr1	119062853	119064785	ENSG00000224238.2|WARS2-IT1|lncRNA|chr1:119062853:119064785:+	0	+
#Deleted in new
chr1	119082339	119082541	ENSG00000116874.11|WARS2|pc|chr1:119082339:119082541:-	0	-
#Partially deleted in new
chr11	19148613	19148820	ENSG00000177054.13|ZDHHC13|pc|chr11:19148613:19148820:+	0	+
#Partially deleted in new
chr11	19148669	19148751	ENSG00000177054.13|ZDHHC13|pc|chr11:19148669:19148751:+	0	+
#Deleted in new
chr1	119150564	119150652	ENSG00000231365.5|AL359915.2|lncRNA|chr1:119150564:119150652:+	0	+
#Deleted in new
chr1	119150564	119150746	ENSG00000231365.5|AL359915.2|lncRNA|chr1:119150564:119150746:+	0	+
#Deleted in new
chr1	119150792	119150934	ENSG00000231365.5|AL359915.2|lncRNA|chr1:119150792:119150934:+	0	+
#Deleted in new
chr1	119181389	119181461	ENSG00000231365.5|AL359915.2|lncRNA|chr1:119181389:119181461:+	0	+
#Deleted in new
chr1	119181977	119183823	ENSG00000231365.5|AL359915.2|lncRNA|chr1:119181977:119183823:+	0	+
#Partially deleted in new
chr11	19210449	19210573	ENSG00000129170.8|CSRP3|pc|chr11:19210449:19210573:-	0	-
#Deleted in new
chr1	119233457	119234181	ENSG00000231365.5|AL359915.2|lncRNA|chr1:119233457:119234181:+	0	+
#Deleted in new
chr11	19301160	19301244	ENSG00000255160.5|AC009652.1|lncRNA|chr11:19301160:19301244:+	0	+
#Deleted in new
chr11	19301376	19301483	ENSG00000255160.5|AC009652.1|lncRNA|chr11:19301376:19301483:+	0	+
#Partially deleted in new
chr1	119328175	119328287	ENSG00000232650.5|LINC01780|lncRNA|chr1:119328175:119328287:+	0	+
#Partially deleted in new
chr1	119328251	119328287	ENSG00000232650.5|LINC01780|lncRNA|chr1:119328251:119328287:+	0	+
#Deleted in new
chr1	11934204	11934323	ENSG00000083444.16|PLOD1|pc|chr1:11934204:11934323:+	0	+
#Deleted in new
chr1	119355990	119356182	ENSG00000232650.5|LINC01780|lncRNA|chr1:119355990:119356182:+	0	+
#Partially deleted in new
chr1	119370083	119370331	ENSG00000230921.1|HAO2-IT1|lncRNA|chr1:119370083:119370331:+	0	+
#Deleted in new
chr11	1947553	1947578	ENSG00000214026.10|MRPL23|pc|chr11:1947553:1947578:+	0	+
#Deleted in new
chr11	1949539	1950161	ENSG00000214026.10|MRPL23|pc|chr11:1949539:1950161:+	0	+
#Deleted in new
chr11	19502671	19503858	ENSG00000255043.1|NAV2-AS5|lncRNA|chr11:19502671:19503858:-	0	-
#Deleted in new
chr11	19505691	19505900	ENSG00000255043.1|NAV2-AS5|lncRNA|chr11:19505691:19505900:-	0	-
#Partially deleted in new
chr11	19518396	19518595	ENSG00000254622.1|NAV2-AS4|lncRNA|chr11:19518396:19518595:-	0	-
#Deleted in new
chr11	19519749	19519896	ENSG00000254622.1|NAV2-AS4|lncRNA|chr11:19519749:19519896:-	0	-
#Deleted in new
chr11	1956541	1956609	ENSG00000214026.10|MRPL23|pc|chr11:1956541:1956609:+	0	+
#Deleted in new
chr1	119659797	119659913	ENSG00000092621.12|PHGDH|pc|chr1:119659797:119659913:+	0	+
#Deleted in new
chr1	119669190	119669401	ENSG00000092621.12|PHGDH|pc|chr1:119669190:119669401:+	0	+
#Deleted in new
chr1	119669193	119669401	ENSG00000092621.12|PHGDH|pc|chr1:119669193:119669401:+	0	+
#Deleted in new
chr1	119670542	119670663	ENSG00000092621.12|PHGDH|pc|chr1:119670542:119670663:+	0	+
#Partially deleted in new
chr1	11971542	11972997	ENSG00000083444.16|PLOD1|pc|chr1:11971542:11972997:+	0	+
#Deleted in new
chr11	1984437	1984522	ENSG00000214026.10|MRPL23|pc|chr11:1984437:1984522:+	0	+
#Deleted in new
chr11	1984849	1984982	ENSG00000226416.1|MRPL23-AS1|lncRNA|chr11:1984849:1984982:-	0	-
#Partially deleted in new
chr11	1985442	1985641	ENSG00000226416.1|MRPL23-AS1|lncRNA|chr11:1985442:1985641:-	0	-
#Partially deleted in new
chr1	119909254	119910613	ENSG00000261662.1|AL359752.1|lncRNA|chr1:119909254:119910613:-	0	-
#Partially deleted in new
chr1	119950119	119950837	ENSG00000134250.19|NOTCH2|pc|chr1:119950119:119950837:-	0	-
#Deleted in new
chr11	19981236	19981337	ENSG00000254542.1|NAV2-AS3|lncRNA|chr11:19981236:19981337:-	0	-
#Deleted in new
chr11	2001217	2001470	ENSG00000130600.17|H19|lncRNA|chr11:2001217:2001470:-	0	-
#Partially deleted in new
chr11	20104210	20105727	ENSG00000166833.19|NAV2|pc|chr11:20104210:20105727:+	0	+
#Deleted in new
chr11	20131729	20135465	ENSG00000279266.1|AC068860.1|lncRNA|chr11:20131729:20135465:+	0	+
#Deleted in new
chr11	20387529	20387774	ENSG00000185238.12|PRMT3|pc|chr11:20387529:20387774:+	0	+
#Deleted in new
chr11	20387557	20387774	ENSG00000185238.12|PRMT3|pc|chr11:20387557:20387774:+	0	+
#Deleted in new
chr11	20387639	20387774	ENSG00000185238.12|PRMT3|pc|chr11:20387639:20387774:+	0	+
#Deleted in new
chr11	20387715	20387774	ENSG00000185238.12|PRMT3|pc|chr11:20387715:20387774:+	0	+
#Partially deleted in new
chr11	20405445	20408032	ENSG00000185238.12|PRMT3|pc|chr11:20405445:20408032:+	0	+
#Deleted in new
chr11	20674488	20674572	ENSG00000165973.18|NELL1|pc|chr11:20674488:20674572:+	0	+
#Partially deleted in new
chr11	20770819	20770900	ENSG00000165973.18|NELL1|pc|chr11:20770819:20770900:+	0	+
#Partially deleted in new
chr11	20770828	20770900	ENSG00000165973.18|NELL1|pc|chr11:20770828:20770900:+	0	+
#Deleted in new
chr11	20773516	20773640	ENSG00000165973.18|NELL1|pc|chr11:20773516:20773640:+	0	+
#Deleted in new
chr1	120805417	120805453	ENSG00000273136.6|NBPF26|pc|chr1:120805417:120805453:+	0	+
#Deleted in new
chr1	120805417	120805458	ENSG00000273136.6|NBPF26|pc|chr1:120805417:120805458:+	0	+
#Deleted in new
chr1	120805417	120805584	ENSG00000273136.6|NBPF26|pc|chr1:120805417:120805584:+	0	+
#Deleted in new
chr1	120805417	120805765	ENSG00000273136.6|NBPF26|pc|chr1:120805417:120805765:+	0	+
#Deleted in new
chr1	120805555	120805710	ENSG00000273136.6|NBPF26|pc|chr1:120805555:120805710:+	0	+
#Deleted in new
chr1	120805555	120805765	ENSG00000273136.6|NBPF26|pc|chr1:120805555:120805765:+	0	+
#Deleted in new
chr1	120805712	120805765	ENSG00000273136.6|NBPF26|pc|chr1:120805712:120805765:+	0	+
#Deleted in new
chr1	120807606	120807709	ENSG00000273136.6|NBPF26|pc|chr1:120807606:120807709:+	0	+
#Deleted in new
chr1	120808544	120808759	ENSG00000273136.6|NBPF26|pc|chr1:120808544:120808759:+	0	+
#Deleted in new
chr1	120809810	120809883	ENSG00000273136.6|NBPF26|pc|chr1:120809810:120809883:+	0	+
#Deleted in new
chr1	120810346	120810558	ENSG00000273136.6|NBPF26|pc|chr1:120810346:120810558:+	0	+
#Deleted in new
chr1	120811885	120812095	ENSG00000273136.6|NBPF26|pc|chr1:120811885:120812095:+	0	+
#Deleted in new
chr1	120811914	120812095	ENSG00000273136.6|NBPF26|pc|chr1:120811914:120812095:+	0	+
#Deleted in new
chr1	120813890	120813993	ENSG00000273136.6|NBPF26|pc|chr1:120813890:120813993:+	0	+
#Deleted in new
chr1	120813905	120813993	ENSG00000273136.6|NBPF26|pc|chr1:120813905:120813993:+	0	+
#Deleted in new
chr1	120814828	120815043	ENSG00000273136.6|NBPF26|pc|chr1:120814828:120815043:+	0	+
#Deleted in new
chr1	120816084	120816157	ENSG00000273136.6|NBPF26|pc|chr1:120816084:120816157:+	0	+
#Deleted in new
chr1	120816621	120816827	ENSG00000273136.6|NBPF26|pc|chr1:120816621:120816827:+	0	+
#Deleted in new
chr1	120818122	120818174	ENSG00000273136.6|NBPF26|pc|chr1:120818122:120818174:+	0	+
#Deleted in new
chr1	120822103	120822267	ENSG00000273136.6|NBPF26|pc|chr1:120822103:120822267:+	0	+
#Deleted in new
chr1	120823308	120823360	ENSG00000273136.6|NBPF26|pc|chr1:120823308:120823360:+	0	+
#Deleted in new
chr1	120823973	120824146	ENSG00000273136.6|NBPF26|pc|chr1:120823973:120824146:+	0	+
#Deleted in new
chr1	120824865	120824917	ENSG00000273136.6|NBPF26|pc|chr1:120824865:120824917:+	0	+
#Deleted in new
chr1	120829763	120829815	ENSG00000273136.6|NBPF26|pc|chr1:120829763:120829815:+	0	+
#Deleted in new
chr1	120830415	120830588	ENSG00000273136.6|NBPF26|pc|chr1:120830415:120830588:+	0	+
#Deleted in new
chr1	120831297	120831349	ENSG00000273136.6|NBPF26|pc|chr1:120831297:120831349:+	0	+
#Deleted in new
chr1	120831987	120832160	ENSG00000273136.6|NBPF26|pc|chr1:120831987:120832160:+	0	+
#Deleted in new
chr1	120832874	120832983	ENSG00000273136.6|NBPF26|pc|chr1:120832874:120832983:+	0	+
#Deleted in new
chr1	120833602	120833775	ENSG00000273136.6|NBPF26|pc|chr1:120833602:120833775:+	0	+
#Deleted in new
chr1	120834494	120834546	ENSG00000273136.6|NBPF26|pc|chr1:120834494:120834546:+	0	+
#Deleted in new
chr1	120834629	120834802	ENSG00000273136.6|NBPF26|pc|chr1:120834629:120834802:+	0	+
#Deleted in new
chr1	120836516	120836568	ENSG00000273136.6|NBPF26|pc|chr1:120836516:120836568:+	0	+
#Deleted in new
chr1	120837168	120837341	ENSG00000273136.6|NBPF26|pc|chr1:120837168:120837341:+	0	+
#Deleted in new
chr1	120838050	120838102	ENSG00000273136.6|NBPF26|pc|chr1:120838050:120838102:+	0	+
#Deleted in new
chr1	120838744	120838917	ENSG00000273136.6|NBPF26|pc|chr1:120838744:120838917:+	0	+
#Deleted in new
chr1	120839631	120839740	ENSG00000273136.6|NBPF26|pc|chr1:120839631:120839740:+	0	+
#Deleted in new
chr1	120840349	120840618	ENSG00000273136.6|NBPF26|pc|chr1:120840349:120840618:+	0	+
#Deleted in new
chr1	120840349	120840619	ENSG00000273136.6|NBPF26|pc|chr1:120840349:120840619:+	0	+
#Deleted in new
chr1	120840349	120840627	ENSG00000273136.6|NBPF26|pc|chr1:120840349:120840627:+	0	+
#Deleted in new
chr1	120840349	120841481	ENSG00000273136.6|NBPF26|pc|chr1:120840349:120841481:+	0	+
#Deleted in new
chr1	120952438	120952625	ENSG00000226067.6|LINC00623|lncRNA|chr1:120952438:120952625:+	0	+
#Deleted in new
chr1	120952438	120952785	ENSG00000226067.6|LINC00623|lncRNA|chr1:120952438:120952785:+	0	+
#Deleted in new
chr1	120953219	120953463	ENSG00000226067.6|LINC00623|lncRNA|chr1:120953219:120953463:+	0	+
#Deleted in new
chr1	120953222	120953449	ENSG00000226067.6|LINC00623|lncRNA|chr1:120953222:120953449:+	0	+
#Deleted in new
chr1	121006846	121007090	ENSG00000226067.6|LINC00623|lncRNA|chr1:121006846:121007090:+	0	+
#Deleted in new
chr1	121008410	121008499	ENSG00000226067.6|LINC00623|lncRNA|chr1:121008410:121008499:+	0	+
#Deleted in new
chr1	121008939	121009109	ENSG00000226067.6|LINC00623|lncRNA|chr1:121008939:121009109:+	0	+
#Deleted in new
chr1	121008939	121009291	ENSG00000226067.6|LINC00623|lncRNA|chr1:121008939:121009291:+	0	+
#Partially deleted in new
chr1	121090288	121092768	ENSG00000233029.3|AC244453.2|lncRNA|chr1:121090288:121092768:-	0	-
#Deleted in new
chr1	121116601	121116676	ENSG00000234998.1|AC244453.3|lncRNA|chr1:121116601:121116676:-	0	-
#Deleted in new
chr1	121128109	121128232	ENSG00000227193.2|AC244453.1|lncRNA|chr1:121128109:121128232:+	0	+
#Deleted in new
chr1	121146649	121146826	ENSG00000227193.2|AC244453.1|lncRNA|chr1:121146649:121146826:+	0	+
#Deleted in new
chr11	21262537	21262570	ENSG00000255167.1|AC090857.2|lncRNA|chr11:21262537:21262570:-	0	-
#Partially deleted in new
chr1	12135587	12135613	ENSG00000120949.14|TNFRSF8|pc|chr1:12135587:12135613:+	0	+
#Deleted in new
chr1	121397762	121397839	ENSG00000230806.1|SRGAP2-AS1|lncRNA|chr1:121397762:121397839:-	0	-
#Deleted in new
chr1	121412718	121412752	ENSG00000231429.2|AC244021.2|lncRNA|chr1:121412718:121412752:+	0	+
#Deleted in new
chr1	121425063	121425212	ENSG00000231429.2|AC244021.2|lncRNA|chr1:121425063:121425212:+	0	+
#Deleted in new
chr1	121460018	121463129	ENSG00000227082.1|AC244021.1|lncRNA|chr1:121460018:121463129:+	0	+
#Deleted in new
chr1	121494378	121494595	ENSG00000228826.2|AL592494.1|lncRNA|chr1:121494378:121494595:-	0	-
#Deleted in new
chr1	121509740	121509804	ENSG00000228826.2|AL592494.1|lncRNA|chr1:121509740:121509804:-	0	-
#Deleted in new
chr1	121510355	121510383	ENSG00000228826.2|AL592494.1|lncRNA|chr1:121510355:121510383:-	0	-
#Partially deleted in new
chr11	2158266	2158336	ENSG00000129965.14|INS-IGF2|pc|chr11:2158266:2158336:-	0	-
#Partially deleted in new
chr1	1218768	1221351	ENSG00000078808.16|SDF4|pc|chr1:1218768:1221351:-	0	-
#Deleted in new
chr11	22113447	22113481	ENSG00000254820.1|AC107882.1|lncRNA|chr11:22113447:22113481:+	0	+
#Partially deleted in new
chr11	22116558	22117001	ENSG00000254820.1|AC107882.1|lncRNA|chr11:22116558:22117001:+	0	+
#Partially deleted in new
chr11	222378	223849	ENSG00000142082.14|SIRT3|pc|chr11:222378:223849:-	0	-
#Deleted in new
chr11	22261208	22261636	ENSG00000255372.1|AC107886.1|lncRNA|chr11:22261208:22261636:-	0	-
#Deleted in new
chr11	22277785	22278034	ENSG00000171714.10|ANO5|pc|chr11:22277785:22278034:+	0	+
#Deleted in new
chr11	22283729	22283824	ENSG00000254768.5|AC104009.1|lncRNA|chr11:22283729:22283824:-	0	-
#Deleted in new
chr11	22305656	22305807	ENSG00000254768.5|AC104009.1|lncRNA|chr11:22305656:22305807:-	0	-
#Deleted in new
chr11	22307236	22307374	ENSG00000254768.5|AC104009.1|lncRNA|chr11:22307236:22307374:-	0	-
#Deleted in new
chr11	22317751	22318046	ENSG00000254768.5|AC104009.1|lncRNA|chr11:22317751:22318046:-	0	-
#Deleted in new
chr11	22319819	22320160	ENSG00000254768.5|AC104009.1|lncRNA|chr11:22319819:22320160:-	0	-
#Deleted in new
chr11	22447113	22447376	ENSG00000255323.5|LINC01495|lncRNA|chr11:22447113:22447376:-	0	-
#Deleted in new
chr11	22480072	22480209	ENSG00000255323.5|LINC01495|lncRNA|chr11:22480072:22480209:-	0	-
#Deleted in new
chr11	225672	226081	ENSG00000142082.14|SIRT3|pc|chr11:225672:226081:-	0	-
#Deleted in new
chr11	225761	226081	ENSG00000142082.14|SIRT3|pc|chr11:225761:226081:-	0	-
#Deleted in new
chr11	22702207	22702630	ENSG00000148935.10|GAS2|pc|chr11:22702207:22702630:+	0	+
#Deleted in new
chr1	1227271	1227319	ENSG00000078808.16|SDF4|pc|chr1:1227271:1227319:-	0	-
#Deleted in new
chr11	22830163	22830299	ENSG00000198168.8|SVIP|pc|chr11:22830163:22830299:-	0	-
#Deleted in new
chr11	22834906	22835064	ENSG00000246225.6|AC006299.1|lncRNA|chr11:22834906:22835064:+	0	+
#Deleted in new
chr11	22838228	22838364	ENSG00000246225.6|AC006299.1|lncRNA|chr11:22838228:22838364:+	0	+
#Deleted in new
chr11	22846930	22847521	ENSG00000255359.2|CCDC179|pc|chr11:22846930:22847521:-	0	-
#Deleted in new
chr11	22847378	22847521	ENSG00000255359.2|CCDC179|pc|chr11:22847378:22847521:-	0	-
#Deleted in new
chr11	22876499	22876848	ENSG00000246225.6|AC006299.1|lncRNA|chr11:22876499:22876848:+	0	+
#Deleted in new
chr11	22920517	22920649	ENSG00000246225.6|AC006299.1|lncRNA|chr11:22920517:22920649:+	0	+
#Deleted in new
chr11	22920517	22920650	ENSG00000246225.6|AC006299.1|lncRNA|chr11:22920517:22920650:+	0	+
#Deleted in new
chr11	2295644	2297921	ENSG00000110665.11|C11orf21|pc|chr11:2295644:2297921:-	0	-
#Deleted in new
chr11	2297172	2297921	ENSG00000110665.11|C11orf21|pc|chr11:2297172:2297921:-	0	-
#Deleted in new
chr11	2297823	2297921	ENSG00000110665.11|C11orf21|pc|chr11:2297823:2297921:-	0	-
#Deleted in new
chr11	2300519	2300613	ENSG00000110665.11|C11orf21|pc|chr11:2300519:2300613:-	0	-
#Deleted in new
chr11	2300683	2300768	ENSG00000110665.11|C11orf21|pc|chr11:2300683:2300768:-	0	-
#Partially deleted in new
chr11	2300683	2301872	ENSG00000110665.11|C11orf21|pc|chr11:2300683:2301872:-	0	-
#Partially deleted in new
chr11	2303409	2303481	ENSG00000064201.15|TSPAN32|pc|chr11:2303409:2303481:+	0	+
#Deleted in new
chr11	2306944	2306990	ENSG00000064201.15|TSPAN32|pc|chr11:2306944:2306990:+	0	+
#Deleted in new
chr11	2309320	2309510	ENSG00000064201.15|TSPAN32|pc|chr11:2309320:2309510:+	0	+
#Deleted in new
chr11	23164899	23165093	ENSG00000255418.5|AC090092.1|lncRNA|chr11:23164899:23165093:+	0	+
#Deleted in new
chr11	23165186	23165333	ENSG00000255418.5|AC090092.1|lncRNA|chr11:23165186:23165333:+	0	+
#Deleted in new
chr11	23165189	23165333	ENSG00000255418.5|AC090092.1|lncRNA|chr11:23165189:23165333:+	0	+
#Deleted in new
chr11	23166492	23166613	ENSG00000255418.5|AC090092.1|lncRNA|chr11:23166492:23166613:+	0	+
#Partially deleted in new
chr11	23166735	23166786	ENSG00000255418.5|AC090092.1|lncRNA|chr11:23166735:23166786:+	0	+
#Deleted in new
chr11	2317862	2317924	ENSG00000064201.15|TSPAN32|pc|chr11:2317862:2317924:+	0	+
#Deleted in new
chr11	2317862	2318142	ENSG00000064201.15|TSPAN32|pc|chr11:2317862:2318142:+	0	+
#Deleted in new
chr11	2317862	2318200	ENSG00000064201.15|TSPAN32|pc|chr11:2317862:2318200:+	0	+
#Deleted in new
chr11	23183399	23183474	ENSG00000255418.5|AC090092.1|lncRNA|chr11:23183399:23183474:+	0	+
#Deleted in new
chr11	23189998	23190046	ENSG00000255418.5|AC090092.1|lncRNA|chr11:23189998:23190046:+	0	+
#Deleted in new
chr11	23192012	23192084	ENSG00000255418.5|AC090092.1|lncRNA|chr11:23192012:23192084:+	0	+
#Deleted in new
chr11	23192345	23192403	ENSG00000255418.5|AC090092.1|lncRNA|chr11:23192345:23192403:+	0	+
#Deleted in new
chr11	23202997	23203161	ENSG00000255418.5|AC090092.1|lncRNA|chr11:23202997:23203161:+	0	+
#Deleted in new
chr11	2328748	2329303	ENSG00000238184.1|CD81-AS1|lncRNA|chr11:2328748:2329303:-	0	-
#Deleted in new
chr11	2328748	2329692	ENSG00000238184.1|CD81-AS1|lncRNA|chr11:2328748:2329692:-	0	-
#Deleted in new
chr11	2329562	2329774	ENSG00000238184.1|CD81-AS1|lncRNA|chr11:2329562:2329774:-	0	-
#Deleted in new
chr11	2334910	2335019	ENSG00000238184.1|CD81-AS1|lncRNA|chr11:2334910:2335019:-	0	-
#Deleted in new
chr11	233910	233928	ENSG00000142082.14|SIRT3|pc|chr11:233910:233928:-	0	-
#Deleted in new
chr11	233910	234004	ENSG00000142082.14|SIRT3|pc|chr11:233910:234004:-	0	-
#Deleted in new
chr1	12367669	12367701	ENSG00000048707.13|VPS13D|pc|chr1:12367669:12367701:+	0	+
#Deleted in new
chr11	23731599	23731658	ENSG00000255193.1|AC100768.2|lncRNA|chr11:23731599:23731658:+	0	+
#Deleted in new
chr11	23761329	23761630	ENSG00000254861.1|AC100768.1|lncRNA|chr11:23761329:23761630:-	0	-
#Deleted in new
chr11	23780787	23780872	ENSG00000254861.1|AC100768.1|lncRNA|chr11:23780787:23780872:-	0	-
#Deleted in new
chr11	2379155	2379206	ENSG00000110651.11|CD81|pc|chr11:2379155:2379206:+	0	+
#Deleted in new
chr11	23794822	23794884	ENSG00000255193.1|AC100768.2|lncRNA|chr11:23794822:23794884:+	0	+
#Partially deleted in new
chr11	23796707	23796970	ENSG00000255193.1|AC100768.2|lncRNA|chr11:23796707:23796970:+	0	+
#Deleted in new
chr11	23804478	23804598	ENSG00000254861.1|AC100768.1|lncRNA|chr11:23804478:23804598:-	0	-
#Deleted in new
chr11	2382459	2382550	ENSG00000110651.11|CD81|pc|chr11:2382459:2382550:+	0	+
#Deleted in new
chr11	2385665	2385806	ENSG00000110651.11|CD81|pc|chr11:2385665:2385806:+	0	+
#Deleted in new
chr11	2386056	2386156	ENSG00000110651.11|CD81|pc|chr11:2386056:2386156:+	0	+
#Deleted in new
chr11	2386085	2386639	ENSG00000110651.11|CD81|pc|chr11:2386085:2386639:+	0	+
#Deleted in new
chr11	2386554	2386639	ENSG00000110651.11|CD81|pc|chr11:2386554:2386639:+	0	+
#Deleted in new
chr11	2390094	2390183	ENSG00000110651.11|CD81|pc|chr11:2390094:2390183:+	0	+
#Deleted in new
chr11	2390102	2390183	ENSG00000110651.11|CD81|pc|chr11:2390102:2390183:+	0	+
#Deleted in new
chr11	2400755	2400798	ENSG00000184281.14|TSSC4|pc|chr11:2400755:2400798:+	0	+
#Deleted in new
chr11	2400762	2400798	ENSG00000184281.14|TSSC4|pc|chr11:2400762:2400798:+	0	+
#Deleted in new
chr11	2401017	2401485	ENSG00000184281.14|TSSC4|pc|chr11:2401017:2401485:+	0	+
#Deleted in new
chr11	2401838	2401979	ENSG00000184281.14|TSSC4|pc|chr11:2401838:2401979:+	0	+
#Deleted in new
chr11	2401838	2402147	ENSG00000184281.14|TSSC4|pc|chr11:2401838:2402147:+	0	+
#Deleted in new
chr11	2401975	2402147	ENSG00000184281.14|TSSC4|pc|chr11:2401975:2402147:+	0	+
#Deleted in new
chr11	2402099	2402147	ENSG00000184281.14|TSSC4|pc|chr11:2402099:2402147:+	0	+
#Deleted in new
chr11	2402135	2402450	ENSG00000184281.14|TSSC4|pc|chr11:2402135:2402450:+	0	+
#Deleted in new
chr11	2402292	2402450	ENSG00000184281.14|TSSC4|pc|chr11:2402292:2402450:+	0	+
#Deleted in new
chr11	2402293	2402450	ENSG00000184281.14|TSSC4|pc|chr11:2402293:2402450:+	0	+
#Deleted in new
chr1	12409837	12409894	ENSG00000048707.13|VPS13D|pc|chr1:12409837:12409894:+	0	+
#Deleted in new
chr11	24235476	24235505	ENSG00000254594.5|AC015771.1|lncRNA|chr11:24235476:24235505:-	0	-
#Deleted in new
chr11	24248872	24248929	ENSG00000254594.5|AC015771.1|lncRNA|chr11:24248872:24248929:-	0	-
#Deleted in new
chr11	24259398	24259562	ENSG00000254594.5|AC015771.1|lncRNA|chr11:24259398:24259562:-	0	-
#Deleted in new
chr11	24259435	24259562	ENSG00000254594.5|AC015771.1|lncRNA|chr11:24259435:24259562:-	0	-
#Deleted in new
chr11	24262080	24262205	ENSG00000254594.5|AC015771.1|lncRNA|chr11:24262080:24262205:-	0	-
#Deleted in new
chr11	24262080	24262218	ENSG00000254594.5|AC015771.1|lncRNA|chr11:24262080:24262218:-	0	-
#Partially deleted in new
chr11	2461435	2461714	ENSG00000053918.15|KCNQ1|pc|chr11:2461435:2461714:+	0	+
#Partially deleted in new
chr11	2461886	2461977	ENSG00000053918.15|KCNQ1|pc|chr11:2461886:2461977:+	0	+
#Deleted in new
chr11	24751454	24751542	ENSG00000187398.11|LUZP2|pc|chr11:24751454:24751542:+	0	+
#Deleted in new
chr11	24785814	24786695	ENSG00000187398.11|LUZP2|pc|chr11:24785814:24786695:+	0	+
#Deleted in new
chr11	24831903	24832049	ENSG00000187398.11|LUZP2|pc|chr11:24831903:24832049:+	0	+
#Split in new
chr11	24890918	24893337	ENSG00000187398.11|LUZP2|pc|chr11:24890918:24893337:+	0	+
#Deleted in new
chr11	24891764	24891928	ENSG00000187398.11|LUZP2|pc|chr11:24891764:24891928:+	0	+
#Partially deleted in new
chr11	24892228	24892521	ENSG00000187398.11|LUZP2|pc|chr11:24892228:24892521:+	0	+
#Deleted in new
chr1	1249776	1251334	ENSG00000260179.1|AL162741.1|lncRNA|chr1:1249776:1251334:-	0	-
#Deleted in new
chr11	251226	251340	ENSG00000185627.17|PSMD13|pc|chr11:251226:251340:+	0	+
#Deleted in new
chr11	2521478	2521570	ENSG00000053918.15|KCNQ1|pc|chr11:2521478:2521570:+	0	+
#Deleted in new
chr11	25734769	25734869	ENSG00000254456.5|AC090592.1|lncRNA|chr11:25734769:25734869:+	0	+
#Deleted in new
chr11	25734808	25734869	ENSG00000254456.5|AC090592.1|lncRNA|chr11:25734808:25734869:+	0	+
#Deleted in new
chr11	25740475	25740560	ENSG00000254456.5|AC090592.1|lncRNA|chr11:25740475:25740560:+	0	+
#Deleted in new
chr11	25770470	25770568	ENSG00000254456.5|AC090592.1|lncRNA|chr11:25770470:25770568:+	0	+
#Deleted in new
chr11	25774169	25774423	ENSG00000254456.5|AC090592.1|lncRNA|chr11:25774169:25774423:+	0	+
#Deleted in new
chr11	25777693	25777791	ENSG00000254456.5|AC090592.1|lncRNA|chr11:25777693:25777791:+	0	+
#Deleted in new
chr11	25780480	25780622	ENSG00000254456.5|AC090592.1|lncRNA|chr11:25780480:25780622:+	0	+
#Deleted in new
chr11	25781628	25781666	ENSG00000254456.5|AC090592.1|lncRNA|chr11:25781628:25781666:+	0	+
#Deleted in new
chr11	25781628	25781758	ENSG00000254456.5|AC090592.1|lncRNA|chr11:25781628:25781758:+	0	+
#Deleted in new
chr11	25924187	25924332	ENSG00000254754.1|AC013799.1|lncRNA|chr11:25924187:25924332:+	0	+
#Deleted in new
chr11	25926605	25926808	ENSG00000254754.1|AC013799.1|lncRNA|chr11:25926605:25926808:+	0	+
#Deleted in new
chr11	26208045	26208347	ENSG00000255243.1|AC099687.1|lncRNA|chr11:26208045:26208347:+	0	+
#Partially deleted in new
chr1	1262169	1262390	ENSG00000160087.20|UBE2J2|pc|chr1:1262169:1262390:-	0	-
#Partially deleted in new
chr1	1262268	1262390	ENSG00000160087.20|UBE2J2|pc|chr1:1262268:1262390:-	0	-
#Deleted in new
chr11	26285710	26286156	ENSG00000254819.1|AC021698.1|lncRNA|chr11:26285710:26286156:-	0	-
#Deleted in new
chr11	26287327	26287549	ENSG00000254819.1|AC021698.1|lncRNA|chr11:26287327:26287549:-	0	-
#Deleted in new
chr11	26287959	26288007	ENSG00000254819.1|AC021698.1|lncRNA|chr11:26287959:26288007:-	0	-
#Deleted in new
chr1	1264782	1264830	ENSG00000160087.20|UBE2J2|pc|chr1:1264782:1264830:-	0	-
#Deleted in new
chr11	26567051	26567094	ENSG00000169550.12|MUC15|pc|chr11:26567051:26567094:-	0	-
#Deleted in new
chr11	26567051	26567139	ENSG00000169550.12|MUC15|pc|chr11:26567051:26567139:-	0	-
#Deleted in new
chr1	1266097	1266290	ENSG00000160087.20|UBE2J2|pc|chr1:1266097:1266290:-	0	-
#Partially deleted in new
chr11	26716272	26716354	ENSG00000148942.14|SLC5A12|pc|chr11:26716272:26716354:-	0	-
#Deleted in new
chr11	27066491	27066662	ENSG00000254560.5|BBOX1-AS1|lncRNA|chr11:27066491:27066662:-	0	-
#Deleted in new
chr11	27151049	27151152	ENSG00000254560.5|BBOX1-AS1|lncRNA|chr11:27151049:27151152:-	0	-
#Partially deleted in new
chr11	27219686	27220086	ENSG00000254560.5|BBOX1-AS1|lncRNA|chr11:27219686:27220086:-	0	-
#Partially deleted in new
chr11	27219686	27220102	ENSG00000254560.5|BBOX1-AS1|lncRNA|chr11:27219686:27220102:-	0	-
#Deleted in new
chr11	27220046	27220113	ENSG00000254560.5|BBOX1-AS1|lncRNA|chr11:27220046:27220113:-	0	-
#Deleted in new
chr11	27338097	27338235	ENSG00000109881.16|CCDC34|pc|chr11:27338097:27338235:-	0	-
#Deleted in new
chr11	27482207	27482433	ENSG00000254862.5|AC100771.2|lncRNA|chr11:27482207:27482433:+	0	+
#Deleted in new
chr1	12753357	12753926	ENSG00000157330.9|C1orf158|pc|chr1:12753357:12753926:+	0	+
#Deleted in new
chr11	27540019	27540116	ENSG00000245573.7|BDNF-AS|lncRNA|chr11:27540019:27540116:+	0	+
#Deleted in new
chr11	27620756	27620875	ENSG00000254934.5|LINC00678|lncRNA|chr11:27620756:27620875:-	0	-
#Deleted in new
chr11	27634330	27634522	ENSG00000254934.5|LINC00678|lncRNA|chr11:27634330:27634522:-	0	-
#Deleted in new
chr11	27634330	27634627	ENSG00000254934.5|LINC00678|lncRNA|chr11:27634330:27634627:-	0	-
#Partially deleted in new
chr11	27660155	27660272	ENSG00000176697.18|BDNF|pc|chr11:27660155:27660272:-	0	-
#Partially deleted in new
chr11	27665259	27665392	ENSG00000245573.7|BDNF-AS|lncRNA|chr11:27665259:27665392:+	0	+
#Deleted in new
chr11	27691105	27691140	ENSG00000245573.7|BDNF-AS|lncRNA|chr11:27691105:27691140:+	0	+
#Partially deleted in new
chr11	2777574	2777813	ENSG00000053918.15|KCNQ1|pc|chr11:2777574:2777813:+	0	+
#Deleted in new
chr1	1279067	1279148	ENSG00000230415.1|LINC01786|lncRNA|chr1:1279067:1279148:+	0	+
#Deleted in new
chr1	1279067	1279393	ENSG00000230415.1|LINC01786|lncRNA|chr1:1279067:1279393:+	0	+
#Deleted in new
chr1	12791396	12791474	ENSG00000116721.9|PRAMEF1|pc|chr1:12791396:12791474:+	0	+
#Deleted in new
chr11	28002425	28002500	ENSG00000255094.1|AC090159.1|lncRNA|chr11:28002425:28002500:-	0	-
#Deleted in new
chr1	1280310	1280420	ENSG00000230415.1|LINC01786|lncRNA|chr1:1280310:1280420:+	0	+
#Deleted in new
chr1	1280435	1280666	ENSG00000162572.20|SCNN1D|pc|chr1:1280435:1280666:+	0	+
#Deleted in new
chr1	1280471	1280666	ENSG00000162572.20|SCNN1D|pc|chr1:1280471:1280666:+	0	+
#Deleted in new
chr11	28076481	28076932	ENSG00000121621.6|KIF18A|pc|chr11:28076481:28076932:-	0	-
#Deleted in new
chr11	28125509	28125587	ENSG00000169519.20|METTL15|pc|chr11:28125509:28125587:+	0	+
#Deleted in new
chr11	28125509	28125866	ENSG00000169519.20|METTL15|pc|chr11:28125509:28125866:+	0	+
#Deleted in new
chr11	28134545	28134645	ENSG00000169519.20|METTL15|pc|chr11:28134545:28134645:+	0	+
#Deleted in new
chr1	1281410	1281610	ENSG00000162572.20|SCNN1D|pc|chr1:1281410:1281610:+	0	+
#Partially deleted in new
chr11	28145503	28145747	ENSG00000169519.20|METTL15|pc|chr11:28145503:28145747:+	0	+
#Deleted in new
chr1	1281924	1282010	ENSG00000162572.20|SCNN1D|pc|chr1:1281924:1282010:+	0	+
#Deleted in new
chr1	1282108	1282315	ENSG00000162572.20|SCNN1D|pc|chr1:1282108:1282315:+	0	+
#Deleted in new
chr1	1282116	1282319	ENSG00000162572.20|SCNN1D|pc|chr1:1282116:1282319:+	0	+
#Deleted in new
chr1	1282163	1282187	ENSG00000162572.20|SCNN1D|pc|chr1:1282163:1282187:+	0	+
#Deleted in new
chr1	1282241	1282315	ENSG00000162572.20|SCNN1D|pc|chr1:1282241:1282315:+	0	+
#Deleted in new
chr1	12822685	12822939	ENSG00000228338.1|LINC01784|lncRNA|chr1:12822685:12822939:-	0	-
#Deleted in new
chr1	1282275	1282315	ENSG00000162572.20|SCNN1D|pc|chr1:1282275:1282315:+	0	+
#Deleted in new
chr1	12823035	12823159	ENSG00000228338.1|LINC01784|lncRNA|chr1:12823035:12823159:-	0	-
#Duplicated in new
chr1	12824604	12825503	ENSG00000239810.3|PRAMEF11|pc|chr1:12824604:12825503:-	0	-
#Deleted in new
chr11	28332182	28332422	ENSG00000169519.20|METTL15|pc|chr11:28332182:28332422:+	0	+
#Deleted in new
chr11	28361936	28362036	ENSG00000169519.20|METTL15|pc|chr11:28361936:28362036:+	0	+
#Partially deleted in new
chr1	1283977	1284090	ENSG00000162572.20|SCNN1D|pc|chr1:1283977:1284090:+	0	+
#Deleted in new
chr11	28398787	28399086	ENSG00000169519.20|METTL15|pc|chr11:28398787:28399086:+	0	+
#Deleted in new
chr11	2840134	2840442	ENSG00000229414.2|KCNQ1-AS1|lncRNA|chr11:2840134:2840442:-	0	-
#Deleted in new
chr11	28410675	28410799	ENSG00000169519.20|METTL15|pc|chr11:28410675:28410799:+	0	+
#Deleted in new
chr1	12848680	12848725	ENSG00000179172.9|HNRNPCL1|pc|chr1:12848680:12848725:-	0	-
#Deleted in new
chr11	28519078	28519341	ENSG00000254606.1|AC013714.1|lncRNA|chr11:28519078:28519341:+	0	+
#Deleted in new
chr1	1285570	1285597	ENSG00000162572.20|SCNN1D|pc|chr1:1285570:1285597:+	0	+
#Deleted in new
chr1	1285570	1285664	ENSG00000162572.20|SCNN1D|pc|chr1:1285570:1285664:+	0	+
#Deleted in new
chr11	2858742	2858939	ENSG00000229414.2|KCNQ1-AS1|lncRNA|chr11:2858742:2858939:-	0	-
#Duplicated in new
chr1	1285925	1286168	ENSG00000162572.20|SCNN1D|pc|chr1:1285925:1286168:+	0	+
#Deleted in new
chr11	287304	287334	ENSG00000255026.1|AC136475.3|lncRNA|chr11:287304:287334:+	0	+
#Deleted in new
chr11	288019	288298	ENSG00000255026.1|AC136475.3|lncRNA|chr11:288019:288298:+	0	+
#Deleted in new
chr11	288037	288811	ENSG00000255026.1|AC136475.3|lncRNA|chr11:288037:288811:+	0	+
#Deleted in new
chr11	288085	288492	ENSG00000255026.1|AC136475.3|lncRNA|chr11:288085:288492:+	0	+
#Deleted in new
chr11	288618	288799	ENSG00000255026.1|AC136475.3|lncRNA|chr11:288618:288799:+	0	+
#Partially deleted in new
chr11	2888094	2888635	ENSG00000254827.5|SLC22A18AS|pc|chr11:2888094:2888635:-	0	-
#Partially deleted in new
chr11	2888096	2888635	ENSG00000254827.5|SLC22A18AS|pc|chr11:2888096:2888635:-	0	-
#Deleted in new
chr11	288949	288978	ENSG00000255026.1|AC136475.3|lncRNA|chr11:288949:288978:+	0	+
#Deleted in new
chr11	288949	288987	ENSG00000255026.1|AC136475.3|lncRNA|chr11:288949:288987:+	0	+
#Deleted in new
chr11	289134	289239	ENSG00000142102.15|PGGHG|pc|chr11:289134:289239:+	0	+
#Deleted in new
chr11	289137	289239	ENSG00000142102.15|PGGHG|pc|chr11:289137:289239:+	0	+
#Deleted in new
chr11	289171	289239	ENSG00000142102.15|PGGHG|pc|chr11:289171:289239:+	0	+
#Deleted in new
chr11	289177	289239	ENSG00000142102.15|PGGHG|pc|chr11:289177:289239:+	0	+
#Deleted in new
chr11	29037741	29037816	ENSG00000249867.5|AC090833.1|lncRNA|chr11:29037741:29037816:+	0	+
#Deleted in new
chr11	29044444	29044871	ENSG00000249867.5|AC090833.1|lncRNA|chr11:29044444:29044871:+	0	+
#Deleted in new
chr11	29059388	29059472	ENSG00000249867.5|AC090833.1|lncRNA|chr11:29059388:29059472:+	0	+
#Deleted in new
chr11	29063288	29063821	ENSG00000249867.5|AC090833.1|lncRNA|chr11:29063288:29063821:+	0	+
#Deleted in new
chr11	29159955	29160062	ENSG00000254526.1|AC090791.1|lncRNA|chr11:29159955:29160062:+	0	+
#Deleted in new
chr11	29160191	29160268	ENSG00000254526.1|AC090791.1|lncRNA|chr11:29160191:29160268:+	0	+
#Deleted in new
chr11	2921351	2921826	ENSG00000110628.13|SLC22A18|pc|chr11:2921351:2921826:+	0	+
#Deleted in new
chr11	29261052	29261136	ENSG00000254526.1|AC090791.1|lncRNA|chr11:29261052:29261136:+	0	+
#Deleted in new
chr11	29266621	29266734	ENSG00000254526.1|AC090791.1|lncRNA|chr11:29266621:29266734:+	0	+
#Deleted in new
chr11	29395362	29395452	ENSG00000254530.1|AC090124.1|lncRNA|chr11:29395362:29395452:-	0	-
#Deleted in new
chr11	29445486	29445570	ENSG00000255227.1|AC090124.2|lncRNA|chr11:29445486:29445570:+	0	+
#Partially deleted in new
chr11	294555	296107	ENSG00000142102.15|PGGHG|pc|chr11:294555:296107:+	0	+
#Deleted in new
chr11	29457310	29457393	ENSG00000255227.1|AC090124.2|lncRNA|chr11:29457310:29457393:+	0	+
#Deleted in new
chr11	2950968	2951016	ENSG00000205531.12|NAP1L4|pc|chr11:2950968:2951016:-	0	-
#Partially deleted in new
chr11	2951779	2952769	ENSG00000205531.12|NAP1L4|pc|chr11:2951779:2952769:-	0	-
#Partially deleted in new
chr11	2951897	2952037	ENSG00000205531.12|NAP1L4|pc|chr11:2951897:2952037:-	0	-
#Deleted in new
chr11	29519075	29519358	ENSG00000255029.1|AC110058.1|lncRNA|chr11:29519075:29519358:+	0	+
#Deleted in new
chr11	2955743	2955766	ENSG00000205531.12|NAP1L4|pc|chr11:2955743:2955766:-	0	-
#Deleted in new
chr11	2955743	2955790	ENSG00000205531.12|NAP1L4|pc|chr11:2955743:2955790:-	0	-
#Deleted in new
chr11	29596805	29596851	ENSG00000255117.5|LINC02546|lncRNA|chr11:29596805:29596851:+	0	+
#Deleted in new
chr11	29618801	29618859	ENSG00000255117.5|LINC02546|lncRNA|chr11:29618801:29618859:+	0	+
#Deleted in new
chr11	29622634	29623076	ENSG00000255117.5|LINC02546|lncRNA|chr11:29622634:29623076:+	0	+
#Partially deleted in new
chr11	29713908	29714140	ENSG00000254734.1|AC107973.1|lncRNA|chr11:29713908:29714140:+	0	+
#Deleted in new
chr11	2981701	2981799	ENSG00000205531.12|NAP1L4|pc|chr11:2981701:2981799:-	0	-
#Deleted in new
chr11	2983745	2983813	ENSG00000205531.12|NAP1L4|pc|chr11:2983745:2983813:-	0	-
#Deleted in new
chr11	29881481	29881714	ENSG00000254734.1|AC107973.1|lncRNA|chr11:29881481:29881714:+	0	+
#Partially deleted in new
chr11	3006878	3008897	ENSG00000110619.17|CARS|pc|chr11:3006878:3008897:-	0	-
#Deleted in new
chr11	3007619	3009533	ENSG00000110619.17|CARS|pc|chr11:3007619:3009533:-	0	-
#Deleted in new
chr11	30084312	30084343	ENSG00000254532.1|AC124657.1|lncRNA|chr11:30084312:30084343:-	0	-
#Partially deleted in new
chr11	3029393	3031576	ENSG00000247473.2|CARS-AS1|lncRNA|chr11:3029393:3031576:+	0	+
#Deleted in new
chr11	3029718	3029753	ENSG00000247473.2|CARS-AS1|lncRNA|chr11:3029718:3029753:+	0	+
#Partially deleted in new
chr1	1303209	1303281	ENSG00000131584.18|ACAP3|pc|chr1:1303209:1303281:-	0	-
#Deleted in new
chr11	3040447	3040581	ENSG00000110619.17|CARS|pc|chr11:3040447:3040581:-	0	-
#Deleted in new
chr11	3040523	3040581	ENSG00000110619.17|CARS|pc|chr11:3040523:3040581:-	0	-
#Duplicated in new
chr1	13049475	13050369	ENSG00000274764.5|PRAMEF27|pc|chr1:13049475:13050369:-	0	-
#Deleted in new
chr11	3054876	3055039	ENSG00000110619.17|CARS|pc|chr11:3054876:3055039:-	0	-
#Deleted in new
chr1	13060868	13060930	ENSG00000277058.2|HNRNPCL3|pc|chr1:13060868:13060930:+	0	+
#Deleted in new
chr11	307630	307792	ENSG00000185201.16|IFITM2|pc|chr11:307630:307792:+	0	+
#Deleted in new
chr11	30831287	30831369	ENSG00000170959.14|DCDC1|pc|chr11:30831287:30831369:-	0	-
#Deleted in new
chr11	30882042	30883518	ENSG00000170959.14|DCDC1|pc|chr11:30882042:30883518:-	0	-
#Duplicated in new
chr11	309012	309230	ENSG00000185201.16|IFITM2|pc|chr11:309012:309230:+	0	+
#Duplicated in new
chr11	309012	309392	ENSG00000185201.16|IFITM2|pc|chr11:309012:309392:+	0	+
#Duplicated in new
chr11	309012	309395	ENSG00000185201.16|IFITM2|pc|chr11:309012:309395:+	0	+
#Partially deleted in new
chr11	3094236	3094879	ENSG00000021762.19|OSBPL5|pc|chr11:3094236:3094879:-	0	-
#Partially deleted in new
chr11	30943201	30944340	ENSG00000170959.14|DCDC1|pc|chr11:30943201:30944340:-	0	-
#Deleted in new
chr11	30943581	30943674	ENSG00000170959.14|DCDC1|pc|chr11:30943581:30943674:-	0	-
#Partially deleted in new
chr11	30992458	30992684	ENSG00000170959.14|DCDC1|pc|chr11:30992458:30992684:-	0	-
#Partially deleted in new
chr11	30992458	30992686	ENSG00000170959.14|DCDC1|pc|chr11:30992458:30992686:-	0	-
#Deleted in new
chr11	310138	310423	ENSG00000254910.1|AC136475.2|lncRNA|chr11:310138:310423:-	0	-
#Deleted in new
chr11	311034	311141	ENSG00000254910.1|AC136475.2|lncRNA|chr11:311034:311141:-	0	-
#Deleted in new
chr11	31155902	31156063	ENSG00000170959.14|DCDC1|pc|chr11:31155902:31156063:-	0	-
#Deleted in new
chr1	13116792	13116854	ENSG00000275774.2|HNRNPCL2|pc|chr1:13116792:13116854:-	0	-
#Partially deleted in new
chr11	3119546	3119987	ENSG00000021762.19|OSBPL5|pc|chr11:3119546:3119987:-	0	-
#Deleted in new
chr11	31215169	31215263	ENSG00000170959.14|DCDC1|pc|chr11:31215169:31215263:-	0	-
#Deleted in new
chr11	31312682	31312813	ENSG00000255525.1|AL137804.1|lncRNA|chr11:31312682:31312813:+	0	+
#Deleted in new
chr11	31314463	31314548	ENSG00000255525.1|AL137804.1|lncRNA|chr11:31314463:31314548:+	0	+
#Deleted in new
chr11	31328116	31328280	ENSG00000170959.14|DCDC1|pc|chr11:31328116:31328280:-	0	-
#Deleted in new
chr11	31328116	31328286	ENSG00000170959.14|DCDC1|pc|chr11:31328116:31328286:-	0	-
#Deleted in new
chr11	31335446	31335564	ENSG00000170959.14|DCDC1|pc|chr11:31335446:31335564:-	0	-
#Deleted in new
chr11	313505	313691	ENSG00000185885.15|IFITM1|pc|chr11:313505:313691:+	0	+
#Deleted in new
chr11	313526	313691	ENSG00000185885.15|IFITM1|pc|chr11:313526:313691:+	0	+
#Deleted in new
chr11	31374102	31374205	ENSG00000170946.14|DNAJC24|pc|chr11:31374102:31374205:+	0	+
#Partially deleted in new
chr11	31384593	31385100	ENSG00000170946.14|DNAJC24|pc|chr11:31384593:31385100:+	0	+
#Deleted in new
chr11	31396282	31396394	ENSG00000170946.14|DNAJC24|pc|chr11:31396282:31396394:+	0	+
#Deleted in new
chr11	31407455	31407543	ENSG00000170946.14|DNAJC24|pc|chr11:31407455:31407543:+	0	+
#Deleted in new
chr11	31408109	31408175	ENSG00000170946.14|DNAJC24|pc|chr11:31408109:31408175:+	0	+
#Deleted in new
chr11	31408109	31408319	ENSG00000170946.14|DNAJC24|pc|chr11:31408109:31408319:+	0	+
#Deleted in new
chr11	31408109	31408330	ENSG00000170946.14|DNAJC24|pc|chr11:31408109:31408330:+	0	+
#Partially deleted in new
chr11	31426286	31427978	ENSG00000170946.14|DNAJC24|pc|chr11:31426286:31427978:+	0	+
#Deleted in new
chr11	31429482	31429606	ENSG00000170946.14|DNAJC24|pc|chr11:31429482:31429606:+	0	+
#Deleted in new
chr11	31429482	31429866	ENSG00000170946.14|DNAJC24|pc|chr11:31429482:31429866:+	0	+
#Partially deleted in new
chr11	31437075	31437154	ENSG00000148950.9|IMMP1L|pc|chr11:31437075:31437154:-	0	-
#Deleted in new
chr11	31452197	31453092	ENSG00000148950.9|IMMP1L|pc|chr11:31452197:31453092:-	0	-
#Deleted in new
chr11	31452544	31453092	ENSG00000148950.9|IMMP1L|pc|chr11:31452544:31453092:-	0	-
#Deleted in new
chr11	3146179	3146661	ENSG00000021762.19|OSBPL5|pc|chr11:3146179:3146661:-	0	-
#Deleted in new
chr11	31469739	31469797	ENSG00000148950.9|IMMP1L|pc|chr11:31469739:31469797:-	0	-
#Deleted in new
chr11	31469757	31469797	ENSG00000148950.9|IMMP1L|pc|chr11:31469757:31469797:-	0	-
#Deleted in new
chr1	13146980	13147240	ENSG00000233336.1|AC245056.1|lncRNA|chr1:13146980:13147240:-	0	-
#Deleted in new
chr1	13147336	13147460	ENSG00000233336.1|AC245056.1|lncRNA|chr1:13147336:13147460:-	0	-
#Deleted in new
chr11	31473723	31473786	ENSG00000148950.9|IMMP1L|pc|chr11:31473723:31473786:-	0	-
#Deleted in new
chr11	31573586	31573624	ENSG00000109911.18|ELP4|pc|chr11:31573586:31573624:+	0	+
#Deleted in new
chr11	31580682	31580800	ENSG00000109911.18|ELP4|pc|chr11:31580682:31580800:+	0	+
#Partially deleted in new
chr11	31598909	31600553	ENSG00000109911.18|ELP4|pc|chr11:31598909:31600553:+	0	+
#Deleted in new
chr1	1316156	1317450	ENSG00000127054.20|INTS11|pc|chr1:1316156:1317450:-	0	-
#Deleted in new
chr11	31681786	31682075	ENSG00000109911.18|ELP4|pc|chr11:31681786:31682075:+	0	+
#Deleted in new
chr11	31687660	31687702	ENSG00000109911.18|ELP4|pc|chr11:31687660:31687702:+	0	+
#Deleted in new
chr11	31689181	31689436	ENSG00000228061.5|AC131571.1|lncRNA|chr11:31689181:31689436:-	0	-
#Deleted in new
chr11	31719472	31719703	ENSG00000109911.18|ELP4|pc|chr11:31719472:31719703:+	0	+
#Deleted in new
chr11	31719472	31719712	ENSG00000109911.18|ELP4|pc|chr11:31719472:31719712:+	0	+
#Deleted in new
chr11	31719472	31719957	ENSG00000109911.18|ELP4|pc|chr11:31719472:31719957:+	0	+
#Deleted in new
chr1	1317580	1317899	ENSG00000240731.1|AL139287.1|lncRNA|chr1:1317580:1317899:-	0	-
#Deleted in new
chr1	1318622	1318689	ENSG00000240731.1|AL139287.1|lncRNA|chr1:1318622:1318689:-	0	-
#Deleted in new
chr11	318639	318746	ENSG00000251661.3|AC136475.1|lncRNA|chr11:318639:318746:+	0	+
#Deleted in new
chr11	318652	318746	ENSG00000251661.3|AC136475.1|lncRNA|chr11:318652:318746:+	0	+
#Deleted in new
chr11	318671	318746	ENSG00000251661.3|AC136475.1|lncRNA|chr11:318671:318746:+	0	+
#Deleted in new
chr11	3189545	3189618	ENSG00000234791.1|AC108448.1|lncRNA|chr11:3189545:3189618:+	0	+
#Deleted in new
chr11	3189709	3189929	ENSG00000234791.1|AC108448.1|lncRNA|chr11:3189709:3189929:+	0	+
#Deleted in new
chr11	32035980	32036248	ENSG00000254584.1|AL035078.1|lncRNA|chr11:32035980:32036248:-	0	-
#Deleted in new
chr11	32064911	32064939	ENSG00000254627.1|AL035078.2|lncRNA|chr11:32064911:32064939:+	0	+
#Deleted in new
chr11	32067457	32067561	ENSG00000254627.1|AL035078.2|lncRNA|chr11:32067457:32067561:+	0	+
#Deleted in new
chr11	321223	321340	ENSG00000142089.15|IFITM3|pc|chr11:321223:321340:-	0	-
#Deleted in new
chr11	32132698	32132786	ENSG00000255375.1|AL078612.2|lncRNA|chr11:32132698:32132786:+	0	+
#Deleted in new
chr11	32137120	32137242	ENSG00000255375.1|AL078612.2|lncRNA|chr11:32137120:32137242:+	0	+
#Deleted in new
chr11	32143143	32143579	ENSG00000255375.1|AL078612.2|lncRNA|chr11:32143143:32143579:+	0	+
#Deleted in new
chr11	321990	322223	ENSG00000255089.1|AC136475.4|lncRNA|chr11:321990:322223:+	0	+
#Deleted in new
chr11	3220226	3220359	ENSG00000236301.5|MRGPRG-AS1|lncRNA|chr11:3220226:3220359:+	0	+
#Deleted in new
chr11	3221569	3221797	ENSG00000236301.5|MRGPRG-AS1|lncRNA|chr11:3221569:3221797:+	0	+
#Deleted in new
chr11	3221569	3223126	ENSG00000236301.5|MRGPRG-AS1|lncRNA|chr11:3221569:3223126:+	0	+
#Deleted in new
chr11	3221569	3223131	ENSG00000236301.5|MRGPRG-AS1|lncRNA|chr11:3221569:3223131:+	0	+
#Deleted in new
chr11	322185	322400	ENSG00000270105.1|AC136475.8|lncRNA|chr11:322185:322400:-	0	-
#Deleted in new
chr11	322379	322426	ENSG00000255089.1|AC136475.4|lncRNA|chr11:322379:322426:+	0	+
#Deleted in new
chr11	322556	322727	ENSG00000270105.1|AC136475.8|lncRNA|chr11:322556:322727:-	0	-
#Deleted in new
chr11	3226060	3226182	ENSG00000224513.2|AC109309.1|lncRNA|chr11:3226060:3226182:+	0	+
#Deleted in new
chr11	3226315	3226402	ENSG00000224513.2|AC109309.1|lncRNA|chr11:3226315:3226402:+	0	+
#Deleted in new
chr1	1322770	1323287	ENSG00000127054.20|INTS11|pc|chr1:1322770:1323287:-	0	-
#Deleted in new
chr1	1322891	1323287	ENSG00000127054.20|INTS11|pc|chr1:1322891:1323287:-	0	-
#Deleted in new
chr1	1323146	1323287	ENSG00000127054.20|INTS11|pc|chr1:1323146:1323287:-	0	-
#Deleted in new
chr1	1323176	1323287	ENSG00000127054.20|INTS11|pc|chr1:1323176:1323287:-	0	-
#Deleted in new
chr1	1323180	1323287	ENSG00000127054.20|INTS11|pc|chr1:1323180:1323287:-	0	-
#Deleted in new
chr11	324110	325069	ENSG00000251661.3|AC136475.1|lncRNA|chr11:324110:325069:+	0	+
#Deleted in new
chr11	324574	325631	ENSG00000251661.3|AC136475.1|lncRNA|chr11:324574:325631:+	0	+
#Deleted in new
chr1	13254211	13254275	ENSG00000270601.4|PRAMEF5|pc|chr1:13254211:13254275:+	0	+
#Deleted in new
chr11	325702	326294	ENSG00000270030.1|AC136475.7|lncRNA|chr11:325702:326294:-	0	-
#Deleted in new
chr11	327170	327736	ENSG00000255328.1|AC136475.5|lncRNA|chr11:327170:327736:+	0	+
#Deleted in new
chr11	327250	327537	ENSG00000142089.15|IFITM3|pc|chr11:327250:327537:-	0	-
#Deleted in new
chr11	327309	327628	ENSG00000255328.1|AC136475.5|lncRNA|chr11:327309:327628:+	0	+
#Deleted in new
chr11	327399	327628	ENSG00000255328.1|AC136475.5|lncRNA|chr11:327399:327628:+	0	+
#Deleted in new
chr11	327729	327957	ENSG00000255328.1|AC136475.5|lncRNA|chr11:327729:327957:+	0	+
#Deleted in new
chr11	329103	329231	ENSG00000255328.1|AC136475.5|lncRNA|chr11:329103:329231:+	0	+
#Deleted in new
chr11	329192	329453	ENSG00000255328.1|AC136475.5|lncRNA|chr11:329192:329453:+	0	+
#Deleted in new
chr11	32925971	32926149	ENSG00000060749.14|QSER1|pc|chr11:32925971:32926149:+	0	+
#Deleted in new
chr11	32984158	32984225	ENSG00000060749.14|QSER1|pc|chr11:32984158:32984225:+	0	+
#Deleted in new
chr11	32993157	32993316	ENSG00000060749.14|QSER1|pc|chr11:32993157:32993316:+	0	+
#Deleted in new
chr11	329982	330122	ENSG00000255328.1|AC136475.5|lncRNA|chr11:329982:330122:+	0	+
#Deleted in new
chr11	33056587	33056723	ENSG00000176148.15|TCP11L1|pc|chr11:33056587:33056723:+	0	+
#Split in new
chr11	33076148	33079454	ENSG00000280798.1|LINC00294|lncRNA|chr11:33076148:33079454:+	0	+
#Deleted in new
chr11	33081114	33081224	ENSG00000176148.15|TCP11L1|pc|chr11:33081114:33081224:+	0	+
#Deleted in new
chr11	33134412	33134469	ENSG00000176102.11|CSTF3|pc|chr11:33134412:33134469:-	0	-
#Deleted in new
chr11	33144869	33144973	ENSG00000176102.11|CSTF3|pc|chr11:33144869:33144973:-	0	-
#Deleted in new
chr1	13315580	13315658	ENSG00000204501.7|PRAMEF15|pc|chr1:13315580:13315658:+	0	+
#Deleted in new
chr11	33156707	33156803	ENSG00000176102.11|CSTF3|pc|chr11:33156707:33156803:-	0	-
#Deleted in new
chr11	33189367	33189557	ENSG00000247151.6|CSTF3-AS1|lncRNA|chr11:33189367:33189557:+	0	+
#Deleted in new
chr1	13324038	13324162	ENSG00000228229.2|AC243961.1|lncRNA|chr1:13324038:13324162:+	0	+
#Deleted in new
chr1	13324258	13324518	ENSG00000228229.2|AC243961.1|lncRNA|chr1:13324258:13324518:+	0	+
#Deleted in new
chr11	333191	333688	ENSG00000270972.1|AC136475.9|lncRNA|chr11:333191:333688:+	0	+
#Deleted in new
chr11	3336720	3336815	ENSG00000254592.1|AC123788.1|lncRNA|chr11:3336720:3336815:+	0	+
#Deleted in new
chr11	3339942	3340630	ENSG00000254592.1|AC123788.1|lncRNA|chr11:3339942:3340630:+	0	+
#Deleted in new
chr11	3360719	3360788	ENSG00000005801.16|ZNF195|pc|chr11:3360719:3360788:-	0	-
#Deleted in new
chr11	3361742	3361889	ENSG00000005801.16|ZNF195|pc|chr11:3361742:3361889:-	0	-
#Deleted in new
chr11	3361782	3361889	ENSG00000005801.16|ZNF195|pc|chr11:3361782:3361889:-	0	-
#Deleted in new
chr11	3361808	3361889	ENSG00000005801.16|ZNF195|pc|chr11:3361808:3361889:-	0	-
#Deleted in new
chr11	3361975	3362032	ENSG00000005801.16|ZNF195|pc|chr11:3361975:3362032:-	0	-
#Deleted in new
chr11	3361975	3362073	ENSG00000005801.16|ZNF195|pc|chr11:3361975:3362073:-	0	-
#Deleted in new
chr11	3362017	3362073	ENSG00000005801.16|ZNF195|pc|chr11:3362017:3362073:-	0	-
#Deleted in new
chr11	3362532	3362602	ENSG00000005801.16|ZNF195|pc|chr11:3362532:3362602:-	0	-
#Deleted in new
chr11	3362532	3362720	ENSG00000005801.16|ZNF195|pc|chr11:3362532:3362720:-	0	-
#Deleted in new
chr11	3362545	3362602	ENSG00000005801.16|ZNF195|pc|chr11:3362545:3362602:-	0	-
#Deleted in new
chr11	3362545	3362831	ENSG00000005801.16|ZNF195|pc|chr11:3362545:3362831:-	0	-
#Deleted in new
chr11	3362567	3362602	ENSG00000005801.16|ZNF195|pc|chr11:3362567:3362602:-	0	-
#Deleted in new
chr11	3363317	3363391	ENSG00000005801.16|ZNF195|pc|chr11:3363317:3363391:-	0	-
#Deleted in new
chr11	33665219	33665564	ENSG00000255202.1|AL049629.1|lncRNA|chr11:33665219:33665564:-	0	-
#Deleted in new
chr11	3366690	3367119	ENSG00000005801.16|ZNF195|pc|chr11:3366690:3367119:-	0	-
#Deleted in new
chr11	3366843	3367057	ENSG00000005801.16|ZNF195|pc|chr11:3366843:3367057:-	0	-
#Deleted in new
chr11	3366945	3367057	ENSG00000005801.16|ZNF195|pc|chr11:3366945:3367057:-	0	-
#Deleted in new
chr11	3368791	3368855	ENSG00000005801.16|ZNF195|pc|chr11:3368791:3368855:-	0	-
#Deleted in new
chr11	3368820	3368855	ENSG00000005801.16|ZNF195|pc|chr11:3368820:3368855:-	0	-
#Deleted in new
chr11	3369240	3369502	ENSG00000005801.16|ZNF195|pc|chr11:3369240:3369502:-	0	-
#Deleted in new
chr11	3369356	3369502	ENSG00000005801.16|ZNF195|pc|chr11:3369356:3369502:-	0	-
#Partially deleted in new
chr11	33696585	33696701	ENSG00000255202.1|AL049629.1|lncRNA|chr11:33696585:33696701:-	0	-
#Deleted in new
chr11	33702667	33702737	ENSG00000085063.14|CD59|pc|chr11:33702667:33702737:-	0	-
#Deleted in new
chr11	33702691	33702737	ENSG00000085063.14|CD59|pc|chr11:33702691:33702737:-	0	-
#Deleted in new
chr11	33711383	33711505	ENSG00000085063.14|CD59|pc|chr11:33711383:33711505:-	0	-
#Deleted in new
chr11	33733494	33733610	ENSG00000085063.14|CD59|pc|chr11:33733494:33733610:-	0	-
#Deleted in new
chr11	33736381	33736408	ENSG00000085063.14|CD59|pc|chr11:33736381:33736408:-	0	-
#Deleted in new
chr11	33736381	33736422	ENSG00000085063.14|CD59|pc|chr11:33736381:33736422:-	0	-
#Deleted in new
chr11	33736381	33736425	ENSG00000085063.14|CD59|pc|chr11:33736381:33736425:-	0	-
#Deleted in new
chr11	33736381	33736439	ENSG00000085063.14|CD59|pc|chr11:33736381:33736439:-	0	-
#Deleted in new
chr11	33736381	33736445	ENSG00000085063.14|CD59|pc|chr11:33736381:33736445:-	0	-
#Deleted in new
chr11	3375496	3375662	ENSG00000005801.16|ZNF195|pc|chr11:3375496:3375662:-	0	-
#Deleted in new
chr11	33763205	33763286	ENSG00000110429.13|FBXO3|pc|chr11:33763205:33763286:-	0	-
#Deleted in new
chr11	33771832	33772003	ENSG00000110429.13|FBXO3|pc|chr11:33771832:33772003:-	0	-
#Deleted in new
chr11	33775253	33775363	ENSG00000254508.5|FBXO3-AS1|lncRNA|chr11:33775253:33775363:+	0	+
#Deleted in new
chr11	33775447	33775670	ENSG00000254508.5|FBXO3-AS1|lncRNA|chr11:33775447:33775670:+	0	+
#Deleted in new
chr11	33775451	33775670	ENSG00000254508.5|FBXO3-AS1|lncRNA|chr11:33775451:33775670:+	0	+
#Deleted in new
chr11	3377616	3377802	ENSG00000005801.16|ZNF195|pc|chr11:3377616:3377802:-	0	-
#Deleted in new
chr11	3377616	3377900	ENSG00000005801.16|ZNF195|pc|chr11:3377616:3377900:-	0	-
#Deleted in new
chr11	33776187	33776340	ENSG00000255272.1|AC113192.5|lncRNA|chr11:33776187:33776340:+	0	+
#Deleted in new
chr11	3379037	3379100	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379100:-	0	-
#Deleted in new
chr11	3379037	3379102	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379102:-	0	-
#Deleted in new
chr11	3379037	3379109	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379109:-	0	-
#Deleted in new
chr11	3379037	3379116	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379116:-	0	-
#Deleted in new
chr11	3379037	3379123	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379123:-	0	-
#Deleted in new
chr11	3379037	3379125	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379125:-	0	-
#Deleted in new
chr11	3379037	3379126	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379126:-	0	-
#Deleted in new
chr11	3379037	3379130	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379130:-	0	-
#Deleted in new
chr11	3379037	3379133	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379133:-	0	-
#Deleted in new
chr11	3379037	3379134	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379134:-	0	-
#Deleted in new
chr11	3379037	3379138	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379138:-	0	-
#Deleted in new
chr11	3379037	3379139	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379139:-	0	-
#Deleted in new
chr11	3379037	3379145	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379145:-	0	-
#Deleted in new
chr11	3379037	3379146	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379146:-	0	-
#Deleted in new
chr11	3379037	3379152	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379152:-	0	-
#Deleted in new
chr11	3379037	3379154	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379154:-	0	-
#Deleted in new
chr11	3379037	3379167	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379167:-	0	-
#Deleted in new
chr11	3379037	3379218	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379218:-	0	-
#Deleted in new
chr11	3379037	3379222	ENSG00000005801.16|ZNF195|pc|chr11:3379037:3379222:-	0	-
#Deleted in new
chr11	33804767	33804874	ENSG00000255169.1|AC113192.4|lncRNA|chr11:33804767:33804874:+	0	+
#Deleted in new
chr11	33804996	33805086	ENSG00000255169.1|AC113192.4|lncRNA|chr11:33804996:33805086:+	0	+
#Deleted in new
chr11	33805291	33805641	ENSG00000255169.1|AC113192.4|lncRNA|chr11:33805291:33805641:+	0	+
#Deleted in new
chr11	33810144	33810231	ENSG00000254619.1|AC113192.1|lncRNA|chr11:33810144:33810231:+	0	+
#Deleted in new
chr11	33810944	33811178	ENSG00000254619.1|AC113192.1|lncRNA|chr11:33810944:33811178:+	0	+
#Deleted in new
chr11	33814876	33814967	ENSG00000255133.1|AC113192.2|lncRNA|chr11:33814876:33814967:-	0	-
#Deleted in new
chr11	33819789	33819904	ENSG00000255133.1|AC113192.2|lncRNA|chr11:33819789:33819904:-	0	-
#Deleted in new
chr11	33821993	33822095	ENSG00000255133.1|AC113192.2|lncRNA|chr11:33821993:33822095:-	0	-
#Deleted in new
chr11	34055685	34055740	ENSG00000135387.20|CAPRIN1|pc|chr11:34055685:34055740:+	0	+
#Partially deleted in new
chr11	34055737	34055805	ENSG00000135387.20|CAPRIN1|pc|chr11:34055737:34055805:+	0	+
#Partially deleted in new
chr11	34106028	34106074	ENSG00000135372.8|NAT10|pc|chr11:34106028:34106074:+	0	+
#Deleted in new
chr11	34107052	34107319	ENSG00000135372.8|NAT10|pc|chr11:34107052:34107319:+	0	+
#Deleted in new
chr11	34147542	34147670	ENSG00000135372.8|NAT10|pc|chr11:34147542:34147670:+	0	+
#Deleted in new
chr11	34544760	34544868	ENSG00000255271.1|AL137224.1|lncRNA|chr11:34544760:34544868:-	0	-
#Deleted in new
chr11	3469318	3469408	ENSG00000254757.1|AC127526.3|lncRNA|chr11:3469318:3469408:+	0	+
#Deleted in new
chr11	3481519	3481739	ENSG00000255367.3|AC127526.4|lncRNA|chr11:3481519:3481739:-	0	-
#Deleted in new
chr11	3482817	3482975	ENSG00000255367.3|AC127526.4|lncRNA|chr11:3482817:3482975:-	0	-
#Deleted in new
chr11	3482862	3482982	ENSG00000254757.1|AC127526.3|lncRNA|chr11:3482862:3482982:+	0	+
#Deleted in new
chr11	34860920	34861036	ENSG00000149089.12|APIP|pc|chr11:34860920:34861036:-	0	-
#Deleted in new
chr11	34875166	34875283	ENSG00000149089.12|APIP|pc|chr11:34875166:34875283:-	0	-
#Partially deleted in new
chr11	34915828	34915938	ENSG00000110435.11|PDHX|pc|chr11:34915828:34915938:+	0	+
#Deleted in new
chr11	35020207	35020591	ENSG00000110435.11|PDHX|pc|chr11:35020207:35020591:+	0	+
#Deleted in new
chr11	3507979	3508396	ENSG00000255367.3|AC127526.4|lncRNA|chr11:3507979:3508396:-	0	-
#Deleted in new
chr11	3508212	3508396	ENSG00000255367.3|AC127526.4|lncRNA|chr11:3508212:3508396:-	0	-
#Deleted in new
chr11	3515090	3515198	ENSG00000255367.3|AC127526.4|lncRNA|chr11:3515090:3515198:-	0	-
#Partially deleted in new
chr11	3531088	3531328	ENSG00000254757.1|AC127526.3|lncRNA|chr11:3531088:3531328:+	0	+
#Deleted in new
chr11	35370940	35371096	ENSG00000110436.11|SLC1A2|pc|chr11:35370940:35371096:-	0	-
#Partially deleted in new
chr11	35420535	35421002	ENSG00000255542.1|AC090625.2|lncRNA|chr11:35420535:35421002:+	0	+
#Deleted in new
chr11	35579429	35579557	ENSG00000254669.1|AL135934.1|lncRNA|chr11:35579429:35579557:-	0	-
#Deleted in new
chr11	35656693	35656858	ENSG00000254686.2|AL138812.1|lncRNA|chr11:35656693:35656858:+	0	+
#Deleted in new
chr11	3571934	3571987	ENSG00000255367.3|AC127526.4|lncRNA|chr11:3571934:3571987:-	0	-
#Deleted in new
chr11	35988860	35989007	ENSG00000255256.1|AL136146.2|lncRNA|chr11:35988860:35989007:+	0	+
#Deleted in new
chr11	36101914	36102031	ENSG00000179241.12|LDLRAD3|pc|chr11:36101914:36102031:+	0	+
#Partially deleted in new
chr1	1361241	1361777	ENSG00000162576.16|MXRA8|pc|chr1:1361241:1361777:-	0	-
#Deleted in new
chr11	36269283	36271827	ENSG00000110442.11|COMMD9|pc|chr11:36269283:36271827:-	0	-
#Deleted in new
chr11	36349867	36350065	ENSG00000135362.13|PRR5L|pc|chr11:36349867:36350065:+	0	+
#Partially deleted in new
chr11	36386520	36386558	ENSG00000255186.1|AC087277.2|lncRNA|chr11:36386520:36386558:+	0	+
#Deleted in new
chr11	36388137	36388250	ENSG00000255186.1|AC087277.2|lncRNA|chr11:36388137:36388250:+	0	+
#Deleted in new
chr11	36396113	36396196	ENSG00000135362.13|PRR5L|pc|chr11:36396113:36396196:+	0	+
#Deleted in new
chr11	36425446	36425800	ENSG00000255060.1|AC009656.1|lncRNA|chr11:36425446:36425800:-	0	-
#Deleted in new
chr11	36425998	36426122	ENSG00000255060.1|AC009656.1|lncRNA|chr11:36425998:36426122:-	0	-
#Deleted in new
chr11	36454668	36454818	ENSG00000135362.13|PRR5L|pc|chr11:36454668:36454818:+	0	+
#Deleted in new
chr11	36496359	36496510	ENSG00000175104.14|TRAF6|pc|chr11:36496359:36496510:-	0	-
#Partially deleted in new
chr11	36510360	36510537	ENSG00000280331.1|AC061999.1|lncRNA|chr11:36510360:36510537:+	0	+
#Deleted in new
chr11	36515463	36515531	ENSG00000166349.9|RAG1|pc|chr11:36515463:36515531:+	0	+
#Deleted in new
chr11	36520131	36520229	ENSG00000166349.9|RAG1|pc|chr11:36520131:36520229:+	0	+
#Deleted in new
chr11	36535958	36536012	ENSG00000166349.9|RAG1|pc|chr11:36535958:36536012:+	0	+
#Deleted in new
chr11	36535975	36536034	ENSG00000166349.9|RAG1|pc|chr11:36535975:36536034:+	0	+
#Deleted in new
chr11	3655503	3655655	ENSG00000129744.2|ART1|pc|chr11:3655503:3655655:+	0	+
#Deleted in new
chr11	36563384	36563498	ENSG00000166349.9|RAG1|pc|chr11:36563384:36563498:+	0	+
#Deleted in new
chr11	36590383	36590475	ENSG00000166349.9|RAG1|pc|chr11:36590383:36590475:+	0	+
#Deleted in new
chr11	3696684	3697260	ENSG00000110713.15|NUP98|pc|chr11:3696684:3697260:-	0	-
#Deleted in new
chr1	13738749	13738940	ENSG00000116731.22|PRDM2|pc|chr1:13738749:13738940:+	0	+
#Deleted in new
chr1	13738784	13738940	ENSG00000116731.22|PRDM2|pc|chr1:13738784:13738940:+	0	+
#Deleted in new
chr11	37954450	37954663	ENSG00000254516.1|AC103798.1|lncRNA|chr11:37954450:37954663:+	0	+
#Deleted in new
chr11	38013509	38014141	ENSG00000279004.1|AC103798.2|lncRNA|chr11:38013509:38014141:-	0	-
#Deleted in new
chr11	3830527	3830651	ENSG00000177105.9|RHOG|pc|chr11:3830527:3830651:-	0	-
#Deleted in new
chr11	38498994	38499234	ENSG00000255477.1|AC021713.1|lncRNA|chr11:38498994:38499234:+	0	+
#Deleted in new
chr11	38499916	38500186	ENSG00000255477.1|AC021713.1|lncRNA|chr11:38499916:38500186:+	0	+
#Deleted in new
chr11	38633746	38633808	ENSG00000255175.5|AC022796.1|lncRNA|chr11:38633746:38633808:-	0	-
#Deleted in new
chr11	38646322	38646348	ENSG00000255175.5|AC022796.1|lncRNA|chr11:38646322:38646348:-	0	-
#Deleted in new
chr11	38646322	38646356	ENSG00000255175.5|AC022796.1|lncRNA|chr11:38646322:38646356:-	0	-
#Deleted in new
chr11	38646475	38646594	ENSG00000254562.5|LINC01493|lncRNA|chr11:38646475:38646594:+	0	+
#Deleted in new
chr11	38663861	38663983	ENSG00000254562.5|LINC01493|lncRNA|chr11:38663861:38663983:+	0	+
#Partially deleted in new
chr1	1387953	1388713	ENSG00000221978.11|CCNL2|pc|chr1:1387953:1388713:-	0	-
#Deleted in new
chr1	1388491	1388510	ENSG00000221978.11|CCNL2|pc|chr1:1388491:1388510:-	0	-
#Deleted in new
chr1	1388625	1388743	ENSG00000221978.11|CCNL2|pc|chr1:1388625:1388743:-	0	-
#Deleted in new
chr1	1388815	1388830	ENSG00000221978.11|CCNL2|pc|chr1:1388815:1388830:-	0	-
#Deleted in new
chr1	1388949	1389047	ENSG00000221978.11|CCNL2|pc|chr1:1388949:1389047:-	0	-
#Deleted in new
chr1	1389345	1389473	ENSG00000221978.11|CCNL2|pc|chr1:1389345:1389473:-	0	-
#Deleted in new
chr11	3921811	3921911	ENSG00000167323.11|STIM1|pc|chr11:3921811:3921911:+	0	+
#Deleted in new
chr1	139789	139847	ENSG00000239906.1|AL627309.2|lncRNA|chr1:139789:139847:-	0	-
#Partially deleted in new
chr1	1399529	1400303	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1399529:1400303:+	0	+
#Partially deleted in new
chr1	1399805	1402033	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1399805:1402033:+	0	+
#Deleted in new
chr11	3999601	3999687	ENSG00000167323.11|STIM1|pc|chr11:3999601:3999687:+	0	+
#Deleted in new
chr1	1399980	1400303	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1399980:1400303:+	0	+
#Deleted in new
chr1	1400157	1400303	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1400157:1400303:+	0	+
#Deleted in new
chr1	1400157	1400544	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1400157:1400544:+	0	+
#Deleted in new
chr1	1400157	1400608	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1400157:1400608:+	0	+
#Deleted in new
chr1	1400418	1400472	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1400418:1400472:+	0	+
#Partially deleted in new
chr1	1400604	1401087	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1400604:1401087:+	0	+
#Partially deleted in new
chr1	1400604	1402006	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1400604:1402006:+	0	+
#Partially deleted in new
chr1	1400604	1402026	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1400604:1402026:+	0	+
#Partially deleted in new
chr1	1400604	1402046	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1400604:1402046:+	0	+
#Deleted in new
chr1	140074	140339	ENSG00000239906.1|AL627309.2|lncRNA|chr1:140074:140339:-	0	-
#Partially deleted in new
chr1	1401242	1402046	ENSG00000224870.6|AL391244.1|lncRNA|chr1:1401242:1402046:+	0	+
#Partially deleted in new
chr1	1402181	1402601	ENSG00000242485.5|MRPL20|pc|chr1:1402181:1402601:-	0	-
#Deleted in new
chr11	4049513	4049608	ENSG00000167323.11|STIM1|pc|chr11:4049513:4049608:+	0	+
#Partially deleted in new
chr1	1405108	1405886	ENSG00000242485.5|MRPL20|pc|chr1:1405108:1405886:-	0	-
#Partially deleted in new
chr1	1405808	1407019	ENSG00000242485.5|MRPL20|pc|chr1:1405808:1407019:-	0	-
#Deleted in new
chr1	1406225	1406307	ENSG00000242485.5|MRPL20|pc|chr1:1406225:1406307:-	0	-
#Deleted in new
chr1	1406248	1406346	ENSG00000242485.5|MRPL20|pc|chr1:1406248:1406346:-	0	-
#Partially deleted in new
chr11	4088883	4089085	ENSG00000167323.11|STIM1|pc|chr11:4088883:4089085:+	0	+
#Deleted in new
chr1	1409095	1410618	ENSG00000272455.1|AL391244.3|lncRNA|chr1:1409095:1410618:+	0	+
#Deleted in new
chr11	4099324	4099468	ENSG00000167325.14|RRM1|pc|chr11:4099324:4099468:+	0	+
#Deleted in new
chr11	4105605	4105691	ENSG00000167325.14|RRM1|pc|chr11:4105605:4105691:+	0	+
#Deleted in new
chr11	4116077	4116360	ENSG00000167325.14|RRM1|pc|chr11:4116077:4116360:+	0	+
#Deleted in new
chr11	4116242	4116360	ENSG00000167325.14|RRM1|pc|chr11:4116242:4116360:+	0	+
#Deleted in new
chr11	4137115	4137289	ENSG00000255276.1|RRM1-AS1|lncRNA|chr11:4137115:4137289:-	0	-
#Deleted in new
chr11	41423910	41423979	ENSG00000255132.1|AC090138.1|lncRNA|chr11:41423910:41423979:+	0	+
#Deleted in new
chr1	141473	143011	ENSG00000241860.6|AL627309.5|lncRNA|chr1:141473:143011:-	0	-
#Deleted in new
chr11	41518894	41519164	ENSG00000255388.5|AC021006.2|lncRNA|chr11:41518894:41519164:-	0	-
#Deleted in new
chr11	41586734	41586901	ENSG00000255388.5|AC021006.2|lncRNA|chr11:41586734:41586901:-	0	-
#Deleted in new
chr11	41589418	41589645	ENSG00000255388.5|AC021006.2|lncRNA|chr11:41589418:41589645:-	0	-
#Deleted in new
chr11	41591105	41591196	ENSG00000255388.5|AC021006.2|lncRNA|chr11:41591105:41591196:-	0	-
#Deleted in new
chr11	41620347	41620399	ENSG00000255388.5|AC021006.2|lncRNA|chr11:41620347:41620399:-	0	-
#Deleted in new
chr11	41712348	41712408	ENSG00000255388.5|AC021006.2|lncRNA|chr11:41712348:41712408:-	0	-
#Deleted in new
chr11	41712348	41712453	ENSG00000255388.5|AC021006.2|lncRNA|chr11:41712348:41712453:-	0	-
#Deleted in new
chr11	41714404	41714448	ENSG00000255388.5|AC021006.2|lncRNA|chr11:41714404:41714448:-	0	-
#Deleted in new
chr11	41714567	41714603	ENSG00000255171.5|LINC01499|lncRNA|chr11:41714567:41714603:+	0	+
#Deleted in new
chr11	41714989	41715035	ENSG00000255171.5|LINC01499|lncRNA|chr11:41714989:41715035:+	0	+
#Deleted in new
chr11	41718305	41718427	ENSG00000255171.5|LINC01499|lncRNA|chr11:41718305:41718427:+	0	+
#Deleted in new
chr11	41720442	41720914	ENSG00000255171.5|LINC01499|lncRNA|chr11:41720442:41720914:+	0	+
#Deleted in new
chr11	41808966	41809083	ENSG00000255171.5|LINC01499|lncRNA|chr11:41808966:41809083:+	0	+
#Deleted in new
chr11	41826150	41826222	ENSG00000255171.5|LINC01499|lncRNA|chr11:41826150:41826222:+	0	+
#Deleted in new
chr11	41826150	41826277	ENSG00000255171.5|LINC01499|lncRNA|chr11:41826150:41826277:+	0	+
#Deleted in new
chr11	41836348	41836442	ENSG00000255171.5|LINC01499|lncRNA|chr11:41836348:41836442:+	0	+
#Deleted in new
chr11	41855919	41856057	ENSG00000255279.1|AC023442.3|lncRNA|chr11:41855919:41856057:+	0	+
#Deleted in new
chr11	41856327	41856554	ENSG00000255279.1|AC023442.3|lncRNA|chr11:41856327:41856554:+	0	+
#Deleted in new
chr11	41856345	41856554	ENSG00000255279.1|AC023442.3|lncRNA|chr11:41856345:41856554:+	0	+
#Deleted in new
chr11	41861700	41861790	ENSG00000255279.1|AC023442.3|lncRNA|chr11:41861700:41861790:+	0	+
#Deleted in new
chr11	41861700	41861830	ENSG00000255279.1|AC023442.3|lncRNA|chr11:41861700:41861830:+	0	+
#Deleted in new
chr11	4202258	4202655	ENSG00000254480.1|AC015689.1|lncRNA|chr11:4202258:4202655:+	0	+
#Deleted in new
chr11	42110506	42110597	ENSG00000255300.5|AC079917.1|lncRNA|chr11:42110506:42110597:-	0	-
#Deleted in new
chr11	42126614	42126699	ENSG00000255300.5|AC079917.1|lncRNA|chr11:42126614:42126699:-	0	-
#Deleted in new
chr11	42163807	42163851	ENSG00000255300.5|AC079917.1|lncRNA|chr11:42163807:42163851:-	0	-
#Deleted in new
chr11	42183291	42183390	ENSG00000255109.5|AC090458.1|lncRNA|chr11:42183291:42183390:-	0	-
#Deleted in new
chr11	42183296	42183390	ENSG00000255109.5|AC090458.1|lncRNA|chr11:42183296:42183390:-	0	-
#Deleted in new
chr11	42187614	42187778	ENSG00000255109.5|AC090458.1|lncRNA|chr11:42187614:42187778:-	0	-
#Deleted in new
chr11	42202333	42202504	ENSG00000255109.5|AC090458.1|lncRNA|chr11:42202333:42202504:-	0	-
#Deleted in new
chr11	42214794	42214986	ENSG00000255109.5|AC090458.1|lncRNA|chr11:42214794:42214986:-	0	-
#Deleted in new
chr1	1422468	1422691	ENSG00000225905.1|AL391244.2|lncRNA|chr1:1422468:1422691:+	0	+
#Deleted in new
chr11	42253613	42253712	ENSG00000255109.5|AC090458.1|lncRNA|chr11:42253613:42253712:-	0	-
#Deleted in new
chr1	142807	143011	ENSG00000241860.6|AL627309.5|lncRNA|chr1:142807:143011:-	0	-
#Deleted in new
chr1	1431804	1431843	ENSG00000225285.1|LINC01770|lncRNA|chr1:1431804:1431843:-	0	-
#Deleted in new
chr11	43332040	43332086	ENSG00000254907.1|AC087276.3|lncRNA|chr11:43332040:43332086:-	0	-
#Deleted in new
chr11	43340223	43340226	ENSG00000166181.12|API5|pc|chr11:43340223:43340226:+	0	+
#Deleted in new
chr11	43385614	43385671	ENSG00000255340.1|AC087276.4|lncRNA|chr11:43385614:43385671:-	0	-
#Deleted in new
chr11	43390282	43390333	ENSG00000254577.1|AC087276.2|lncRNA|chr11:43390282:43390333:+	0	+
#Deleted in new
chr11	43395363	43395495	ENSG00000254577.1|AC087276.2|lncRNA|chr11:43395363:43395495:+	0	+
#Partially deleted in new
chr11	43468155	43468363	ENSG00000052841.14|TTC17|pc|chr11:43468155:43468363:+	0	+
#Deleted in new
chr11	43486415	43486451	ENSG00000052841.14|TTC17|pc|chr11:43486415:43486451:+	0	+
#Deleted in new
chr1	14348954	14349378	ENSG00000234593.2|AL359873.1|lncRNA|chr1:14348954:14349378:-	0	-
#Duplicated in new
chr1	143499186	143499375	ENSG00000235887.2|AC239859.3|lncRNA|chr1:143499186:143499375:-	0	-
#Deleted in new
chr11	43670285	43670474	ENSG00000283217.1|AC068205.1|lncRNA|chr11:43670285:43670474:+	0	+
#Deleted in new
chr1	143736065	143736123	ENSG00000232721.2|AC239800.2|lncRNA|chr1:143736065:143736123:+	0	+
#Deleted in new
chr1	143736889	143739506	ENSG00000232721.2|AC239800.2|lncRNA|chr1:143736889:143739506:+	0	+
#Deleted in new
chr11	43754872	43755536	ENSG00000149084.12|HSD17B12|pc|chr11:43754872:43755536:+	0	+
#Deleted in new
chr1	143790009	143790263	ENSG00000263590.2|AC239800.3|lncRNA|chr1:143790009:143790263:+	0	+
#Deleted in new
chr1	143792119	143797108	ENSG00000263590.2|AC239800.3|lncRNA|chr1:143792119:143797108:+	0	+
#Deleted in new
chr11	43806244	43806461	ENSG00000149084.12|HSD17B12|pc|chr11:43806244:43806461:+	0	+
#Deleted in new
chr11	43848424	43848516	ENSG00000246250.2|AC087521.2|lncRNA|chr11:43848424:43848516:-	0	-
#Deleted in new
chr11	43874558	43874929	ENSG00000246250.2|AC087521.2|lncRNA|chr11:43874558:43874929:-	0	-
#Partially deleted in new
chr1	143877730	143880209	ENSG00000234571.1|AC239798.2|lncRNA|chr1:143877730:143880209:-	0	-
#Deleted in new
chr11	43877982	43878073	ENSG00000246250.2|AC087521.2|lncRNA|chr11:43877982:43878073:-	0	-
#Deleted in new
chr11	43877982	43878076	ENSG00000246250.2|AC087521.2|lncRNA|chr11:43877982:43878076:-	0	-
#Deleted in new
chr1	14390685	14390751	ENSG00000234593.2|AL359873.1|lncRNA|chr1:14390685:14390751:-	0	-
#Deleted in new
chr1	14391458	14391575	ENSG00000234593.2|AL359873.1|lncRNA|chr1:14391458:14391575:-	0	-
#Deleted in new
chr1	143915418	143915541	ENSG00000230186.3|AC246680.1|lncRNA|chr1:143915418:143915541:+	0	+
#Deleted in new
chr11	43919585	43919662	ENSG00000244926.6|ALKBH3-AS1|lncRNA|chr11:43919585:43919662:-	0	-
#Deleted in new
chr1	143934599	143934776	ENSG00000230186.3|AC246680.1|lncRNA|chr1:143934599:143934776:+	0	+
#Deleted in new
chr11	43947051	43947206	ENSG00000244953.1|AC087521.1|lncRNA|chr11:43947051:43947206:-	0	-
#Deleted in new
chr11	43971442	43971527	ENSG00000254409.1|AC087521.3|lncRNA|chr11:43971442:43971527:+	0	+
#Deleted in new
chr11	43995013	43995054	ENSG00000254409.1|AC087521.3|lncRNA|chr11:43995013:43995054:+	0	+
#Deleted in new
chr11	43995309	43995491	ENSG00000254409.1|AC087521.3|lncRNA|chr11:43995309:43995491:+	0	+
#Deleted in new
chr11	44001098	44001157	ENSG00000254409.1|AC087521.3|lncRNA|chr11:44001098:44001157:+	0	+
#Deleted in new
chr11	44065924	44066012	ENSG00000110455.13|ACCS|pc|chr11:44065924:44066012:+	0	+
#Deleted in new
chr11	44066178	44066322	ENSG00000110455.13|ACCS|pc|chr11:44066178:44066322:+	0	+
#Partially deleted in new
chr11	44066267	44066701	ENSG00000110455.13|ACCS|pc|chr11:44066267:44066701:+	0	+
#Partially deleted in new
chr11	44066523	44066701	ENSG00000110455.13|ACCS|pc|chr11:44066523:44066701:+	0	+
#Partially deleted in new
chr11	44066535	44066701	ENSG00000110455.13|ACCS|pc|chr11:44066535:44066701:+	0	+
#Deleted in new
chr11	44071461	44071724	ENSG00000255165.1|AC134775.1|lncRNA|chr11:44071461:44071724:+	0	+
#Deleted in new
chr11	44072202	44072403	ENSG00000255165.1|AC134775.1|lncRNA|chr11:44072202:44072403:+	0	+
#Partially deleted in new
chr11	44075525	44075856	ENSG00000110455.13|ACCS|pc|chr11:44075525:44075856:+	0	+
#Deleted in new
chr11	44096196	44096321	ENSG00000151348.13|EXT2|pc|chr11:44096196:44096321:+	0	+
#Deleted in new
chr11	44096222	44096321	ENSG00000151348.13|EXT2|pc|chr11:44096222:44096321:+	0	+
#Deleted in new
chr11	44103689	44103745	ENSG00000151348.13|EXT2|pc|chr11:44103689:44103745:+	0	+
#Deleted in new
chr11	44103706	44103745	ENSG00000151348.13|EXT2|pc|chr11:44103706:44103745:+	0	+
#Deleted in new
chr11	44104616	44104783	ENSG00000151348.13|EXT2|pc|chr11:44104616:44104783:+	0	+
#Deleted in new
chr1	144227029	144227379	ENSG00000232527.7|AC245595.1|lncRNA|chr1:144227029:144227379:-	0	-
#Deleted in new
chr1	144418112	144418370	ENSG00000237343.1|AC246785.3|lncRNA|chr1:144418112:144418370:-	0	-
#Deleted in new
chr1	144419136	144419192	ENSG00000237343.1|AC246785.3|lncRNA|chr1:144419136:144419192:-	0	-
#Deleted in new
chr1	144421385	144423256	ENSG00000266338.6|NBPF15|pc|chr1:144421385:144423256:-	0	-
#Deleted in new
chr1	144421389	144423256	ENSG00000266338.6|NBPF15|pc|chr1:144421389:144423256:-	0	-
#Deleted in new
chr1	144423869	144423975	ENSG00000266338.6|NBPF15|pc|chr1:144423869:144423975:-	0	-
#Deleted in new
chr1	144424689	144424862	ENSG00000266338.6|NBPF15|pc|chr1:144424689:144424862:-	0	-
#Deleted in new
chr1	144425516	144425568	ENSG00000266338.6|NBPF15|pc|chr1:144425516:144425568:-	0	-
#Deleted in new
chr1	144426277	144426450	ENSG00000266338.6|NBPF15|pc|chr1:144426277:144426450:-	0	-
#Deleted in new
chr1	144427046	144427098	ENSG00000266338.6|NBPF15|pc|chr1:144427046:144427098:-	0	-
#Deleted in new
chr1	144427817	144427990	ENSG00000266338.6|NBPF15|pc|chr1:144427817:144427990:-	0	-
#Deleted in new
chr1	144428605	144428657	ENSG00000266338.6|NBPF15|pc|chr1:144428605:144428657:-	0	-
#Deleted in new
chr1	144429699	144429863	ENSG00000266338.6|NBPF15|pc|chr1:144429699:144429863:-	0	-
#Deleted in new
chr1	144433772	144433824	ENSG00000266338.6|NBPF15|pc|chr1:144433772:144433824:-	0	-
#Deleted in new
chr1	144435110	144435316	ENSG00000266338.6|NBPF15|pc|chr1:144435110:144435316:-	0	-
#Deleted in new
chr1	144435780	144435853	ENSG00000266338.6|NBPF15|pc|chr1:144435780:144435853:-	0	-
#Deleted in new
chr1	144436894	144437109	ENSG00000266338.6|NBPF15|pc|chr1:144436894:144437109:-	0	-
#Deleted in new
chr1	144437944	144438047	ENSG00000266338.6|NBPF15|pc|chr1:144437944:144438047:-	0	-
#Deleted in new
chr1	144439828	144440038	ENSG00000266338.6|NBPF15|pc|chr1:144439828:144440038:-	0	-
#Deleted in new
chr1	144439992	144440038	ENSG00000266338.6|NBPF15|pc|chr1:144439992:144440038:-	0	-
#Deleted in new
chr1	144440140	144440295	ENSG00000266338.6|NBPF15|pc|chr1:144440140:144440295:-	0	-
#Deleted in new
chr1	144440208	144440295	ENSG00000266338.6|NBPF15|pc|chr1:144440208:144440295:-	0	-
#Deleted in new
chr1	144440401	144440581	ENSG00000266338.6|NBPF15|pc|chr1:144440401:144440581:-	0	-
#Deleted in new
chr1	144450771	144450802	ENSG00000266338.6|NBPF15|pc|chr1:144450771:144450802:-	0	-
#Deleted in new
chr1	144450771	144450870	ENSG00000266338.6|NBPF15|pc|chr1:144450771:144450870:-	0	-
#Deleted in new
chr1	144456536	144456761	ENSG00000266338.6|NBPF15|pc|chr1:144456536:144456761:-	0	-
#Deleted in new
chr1	144456536	144456805	ENSG00000266338.6|NBPF15|pc|chr1:144456536:144456805:-	0	-
#Deleted in new
chr1	144456536	144456809	ENSG00000266338.6|NBPF15|pc|chr1:144456536:144456809:-	0	-
#Deleted in new
chr1	144459365	144459483	ENSG00000266338.6|NBPF15|pc|chr1:144459365:144459483:-	0	-
#Deleted in new
chr1	144460842	144460961	ENSG00000266338.6|NBPF15|pc|chr1:144460842:144460961:-	0	-
#Deleted in new
chr1	144461380	144461558	ENSG00000266338.6|NBPF15|pc|chr1:144461380:144461558:-	0	-
#Deleted in new
chr1	144461380	144461591	ENSG00000266338.6|NBPF15|pc|chr1:144461380:144461591:-	0	-
#Deleted in new
chr1	144461380	144461644	ENSG00000266338.6|NBPF15|pc|chr1:144461380:144461644:-	0	-
#Deleted in new
chr1	144461380	144461647	ENSG00000266338.6|NBPF15|pc|chr1:144461380:144461647:-	0	-
#Deleted in new
chr1	144461380	144461674	ENSG00000266338.6|NBPF15|pc|chr1:144461380:144461674:-	0	-
#Partially deleted in new
chr11	44469482	44469614	ENSG00000255451.1|AC010768.4|lncRNA|chr11:44469482:44469614:+	0	+
#Partially deleted in new
chr11	44585142	44585292	ENSG00000085117.11|CD82|pc|chr11:44585142:44585292:+	0	+
#Deleted in new
chr11	44587231	44587556	ENSG00000085117.11|CD82|pc|chr11:44587231:44587556:+	0	+
#Deleted in new
chr11	44587474	44587503	ENSG00000085117.11|CD82|pc|chr11:44587474:44587503:+	0	+
#Deleted in new
chr11	44587474	44587556	ENSG00000085117.11|CD82|pc|chr11:44587474:44587556:+	0	+
#Deleted in new
chr11	44587709	44587886	ENSG00000085117.11|CD82|pc|chr11:44587709:44587886:+	0	+
#Deleted in new
chr11	44596855	44596969	ENSG00000085117.11|CD82|pc|chr11:44596855:44596969:+	0	+
#Deleted in new
chr11	44604427	44604501	ENSG00000085117.11|CD82|pc|chr11:44604427:44604501:+	0	+
#Deleted in new
chr11	44604507	44604730	ENSG00000254693.1|AC010768.1|lncRNA|chr11:44604507:44604730:-	0	-
#Partially deleted in new
chr11	44606169	44606460	ENSG00000255092.1|AC010768.2|lncRNA|chr11:44606169:44606460:-	0	-
#Deleted in new
chr11	44606670	44606768	ENSG00000255092.1|AC010768.2|lncRNA|chr11:44606670:44606768:-	0	-
#Deleted in new
chr11	44606852	44606934	ENSG00000255092.1|AC010768.2|lncRNA|chr11:44606852:44606934:-	0	-
#Deleted in new
chr1	144627191	144627237	ENSG00000277199.1|LINC01632|lncRNA|chr1:144627191:144627237:-	0	-
#Deleted in new
chr1	144628536	144628613	ENSG00000277199.1|LINC01632|lncRNA|chr1:144628536:144628613:-	0	-
#Deleted in new
chr1	144630085	144630103	ENSG00000277199.1|LINC01632|lncRNA|chr1:144630085:144630103:-	0	-
#Deleted in new
chr1	144630743	144630862	ENSG00000277199.1|LINC01632|lncRNA|chr1:144630743:144630862:-	0	-
#Deleted in new
chr1	144632495	144632587	ENSG00000277199.1|LINC01632|lncRNA|chr1:144632495:144632587:-	0	-
#Duplicated in new
chr1	144641607	144641793	ENSG00000224363.2|FP700111.1|lncRNA|chr1:144641607:144641793:+	0	+
#Deleted in new
chr11	44696220	44696301	ENSG00000255079.1|AC104241.2|lncRNA|chr11:44696220:44696301:-	0	-
#Deleted in new
chr11	44719391	44719616	ENSG00000255032.1|AC104241.1|lncRNA|chr11:44719391:44719616:-	0	-
#Deleted in new
chr11	44736174	44736289	ENSG00000255032.1|AC104241.1|lncRNA|chr11:44736174:44736289:-	0	-
#Deleted in new
chr11	44736404	44736692	ENSG00000255032.1|AC104241.1|lncRNA|chr11:44736404:44736692:-	0	-
#Deleted in new
chr11	4482645	4483176	ENSG00000196778.3|OR52K1|pc|chr11:4482645:4483176:+	0	+
#Deleted in new
chr11	448267	448419	ENSG00000174915.11|PTDSS2|pc|chr11:448267:448419:+	0	+
#Deleted in new
chr11	44859602	44859740	ENSG00000157570.11|TSPAN18|pc|chr11:44859602:44859740:+	0	+
#Deleted in new
chr11	44860327	44860469	ENSG00000157570.11|TSPAN18|pc|chr11:44860327:44860469:+	0	+
#Split in new
chr11	4488572	4493497	ENSG00000196778.3|OR52K1|pc|chr11:4488572:4493497:+	0	+
#Deleted in new
chr11	44885902	44886564	ENSG00000175274.18|TP53I11|pc|chr11:44885902:44886564:-	0	-
#Split in new
chr11	4488952	4493497	ENSG00000196778.3|OR52K1|pc|chr11:4488952:4493497:+	0	+
#Deleted in new
chr11	44901219	44901318	ENSG00000175274.18|TP53I11|pc|chr11:44901219:44901318:-	0	-
#Deleted in new
chr11	44903355	44903659	ENSG00000175274.18|TP53I11|pc|chr11:44903355:44903659:-	0	-
#Deleted in new
chr11	44903779	44903890	ENSG00000175274.18|TP53I11|pc|chr11:44903779:44903890:-	0	-
#Partially deleted in new
chr11	44935560	44936056	ENSG00000175274.18|TP53I11|pc|chr11:44935560:44936056:-	0	-
#Partially deleted in new
chr11	44936217	44936689	ENSG00000175274.18|TP53I11|pc|chr11:44936217:44936689:-	0	-
#Partially deleted in new
chr1	1449688	1450758	ENSG00000215915.9|ATAD3C|pc|chr1:1449688:1450758:+	0	+
#Partially deleted in new
chr11	44973901	44974407	ENSG00000254654.1|AC068858.1|lncRNA|chr11:44973901:44974407:+	0	+
#Deleted in new
chr11	44974795	44974893	ENSG00000254654.1|AC068858.1|lncRNA|chr11:44974795:44974893:+	0	+
#Deleted in new
chr11	44977308	44977402	ENSG00000254654.1|AC068858.1|lncRNA|chr11:44977308:44977402:+	0	+
#Deleted in new
chr1	1449913	1450041	ENSG00000215915.9|ATAD3C|pc|chr1:1449913:1450041:+	0	+
#Deleted in new
chr11	45095805	45095901	ENSG00000019485.13|PRDM11|pc|chr11:45095805:45095901:+	0	+
#Partially deleted in new
chr11	45254373	45254649	ENSG00000254497.1|AC103681.1|lncRNA|chr11:45254373:45254649:+	0	+
#Deleted in new
chr11	45269406	45269508	ENSG00000019505.7|SYT13|pc|chr11:45269406:45269508:-	0	-
#Deleted in new
chr1	145281115	145281462	ENSG00000276216.1|AC245014.3|lncRNA|chr1:145281115:145281462:+	0	+
#Deleted in new
chr1	145286609	145286870	ENSG00000236140.1|AC245014.1|lncRNA|chr1:145286609:145286870:-	0	-
#Deleted in new
chr1	145287635	145287755	ENSG00000236140.1|AC245014.1|lncRNA|chr1:145287635:145287755:-	0	-
#Deleted in new
chr1	145289899	145291769	ENSG00000162825.16|NBPF20|pc|chr1:145289899:145291769:-	0	-
#Deleted in new
chr1	145290619	145291769	ENSG00000162825.16|NBPF20|pc|chr1:145290619:145291769:-	0	-
#Deleted in new
chr1	145290638	145291769	ENSG00000162825.16|NBPF20|pc|chr1:145290638:145291769:-	0	-
#Deleted in new
chr1	145291499	145291769	ENSG00000162825.16|NBPF20|pc|chr1:145291499:145291769:-	0	-
#Deleted in new
chr1	145292380	145292489	ENSG00000162825.16|NBPF20|pc|chr1:145292380:145292489:-	0	-
#Deleted in new
chr1	145293203	145293376	ENSG00000162825.16|NBPF20|pc|chr1:145293203:145293376:-	0	-
#Deleted in new
chr1	145294020	145294072	ENSG00000162825.16|NBPF20|pc|chr1:145294020:145294072:-	0	-
#Deleted in new
chr1	145294781	145294954	ENSG00000162825.16|NBPF20|pc|chr1:145294781:145294954:-	0	-
#Deleted in new
chr1	145295566	145295618	ENSG00000162825.16|NBPF20|pc|chr1:145295566:145295618:-	0	-
#Deleted in new
chr1	145296337	145296510	ENSG00000162825.16|NBPF20|pc|chr1:145296337:145296510:-	0	-
#Deleted in new
chr1	145297138	145297247	ENSG00000162825.16|NBPF20|pc|chr1:145297138:145297247:-	0	-
#Deleted in new
chr1	145297961	145298134	ENSG00000162825.16|NBPF20|pc|chr1:145297961:145298134:-	0	-
#Deleted in new
chr1	145298786	145298838	ENSG00000162825.16|NBPF20|pc|chr1:145298786:145298838:-	0	-
#Deleted in new
chr1	145299547	145299720	ENSG00000162825.16|NBPF20|pc|chr1:145299547:145299720:-	0	-
#Deleted in new
chr1	145300328	145300380	ENSG00000162825.16|NBPF20|pc|chr1:145300328:145300380:-	0	-
#Deleted in new
chr1	145301099	145301192	ENSG00000162825.16|NBPF20|pc|chr1:145301099:145301192:-	0	-
#Deleted in new
chr1	145301099	145301272	ENSG00000162825.16|NBPF20|pc|chr1:145301099:145301272:-	0	-
#Deleted in new
chr1	145301900	145302009	ENSG00000162825.16|NBPF20|pc|chr1:145301900:145302009:-	0	-
#Deleted in new
chr1	145302723	145302896	ENSG00000162825.16|NBPF20|pc|chr1:145302723:145302896:-	0	-
#Deleted in new
chr1	145302816	145302896	ENSG00000162825.16|NBPF20|pc|chr1:145302816:145302896:-	0	-
#Deleted in new
chr1	145303532	145303584	ENSG00000162825.16|NBPF20|pc|chr1:145303532:145303584:-	0	-
#Deleted in new
chr1	145304293	145304466	ENSG00000162825.16|NBPF20|pc|chr1:145304293:145304466:-	0	-
#Deleted in new
chr1	145305069	145305178	ENSG00000162825.16|NBPF20|pc|chr1:145305069:145305178:-	0	-
#Deleted in new
chr1	145305892	145306065	ENSG00000162825.16|NBPF20|pc|chr1:145305892:145306065:-	0	-
#Deleted in new
chr1	145306715	145306767	ENSG00000162825.16|NBPF20|pc|chr1:145306715:145306767:-	0	-
#Deleted in new
chr1	145307476	145307649	ENSG00000162825.16|NBPF20|pc|chr1:145307476:145307649:-	0	-
#Deleted in new
chr1	145308252	145308361	ENSG00000162825.16|NBPF20|pc|chr1:145308252:145308361:-	0	-
#Deleted in new
chr1	145309075	145309248	ENSG00000162825.16|NBPF20|pc|chr1:145309075:145309248:-	0	-
#Deleted in new
chr1	145309896	145309948	ENSG00000162825.16|NBPF20|pc|chr1:145309896:145309948:-	0	-
#Deleted in new
chr1	145310657	145310830	ENSG00000162825.16|NBPF20|pc|chr1:145310657:145310830:-	0	-
#Deleted in new
chr1	145311436	145311488	ENSG00000162825.16|NBPF20|pc|chr1:145311436:145311488:-	0	-
#Deleted in new
chr1	145312207	145312380	ENSG00000162825.16|NBPF20|pc|chr1:145312207:145312380:-	0	-
#Deleted in new
chr1	145313008	145313117	ENSG00000162825.16|NBPF20|pc|chr1:145313008:145313117:-	0	-
#Deleted in new
chr1	145313831	145314004	ENSG00000162825.16|NBPF20|pc|chr1:145313831:145314004:-	0	-
#Deleted in new
chr1	145314664	145314716	ENSG00000162825.16|NBPF20|pc|chr1:145314664:145314716:-	0	-
#Deleted in new
chr1	145315425	145315598	ENSG00000162825.16|NBPF20|pc|chr1:145315425:145315598:-	0	-
#Deleted in new
chr1	145316206	145316258	ENSG00000162825.16|NBPF20|pc|chr1:145316206:145316258:-	0	-
#Deleted in new
chr1	145316977	145317150	ENSG00000162825.16|NBPF20|pc|chr1:145316977:145317150:-	0	-
#Deleted in new
chr1	145317780	145317889	ENSG00000162825.16|NBPF20|pc|chr1:145317780:145317889:-	0	-
#Deleted in new
chr1	145318603	145318776	ENSG00000162825.16|NBPF20|pc|chr1:145318603:145318776:-	0	-
#Deleted in new
chr1	145319434	145319486	ENSG00000162825.16|NBPF20|pc|chr1:145319434:145319486:-	0	-
#Deleted in new
chr1	145320195	145320368	ENSG00000162825.16|NBPF20|pc|chr1:145320195:145320368:-	0	-
#Deleted in new
chr1	145320968	145321020	ENSG00000162825.16|NBPF20|pc|chr1:145320968:145321020:-	0	-
#Deleted in new
chr1	145321739	145321912	ENSG00000162825.16|NBPF20|pc|chr1:145321739:145321912:-	0	-
#Deleted in new
chr1	145322542	145322651	ENSG00000162825.16|NBPF20|pc|chr1:145322542:145322651:-	0	-
#Deleted in new
chr1	145323365	145323538	ENSG00000162825.16|NBPF20|pc|chr1:145323365:145323538:-	0	-
#Deleted in new
chr1	145324184	145324236	ENSG00000162825.16|NBPF20|pc|chr1:145324184:145324236:-	0	-
#Deleted in new
chr1	145324945	145325118	ENSG00000162825.16|NBPF20|pc|chr1:145324945:145325118:-	0	-
#Deleted in new
chr1	145325718	145325770	ENSG00000162825.16|NBPF20|pc|chr1:145325718:145325770:-	0	-
#Deleted in new
chr1	145326489	145326662	ENSG00000162825.16|NBPF20|pc|chr1:145326489:145326662:-	0	-
#Deleted in new
chr1	145327290	145327399	ENSG00000162825.16|NBPF20|pc|chr1:145327290:145327399:-	0	-
#Deleted in new
chr1	145328113	145328286	ENSG00000162825.16|NBPF20|pc|chr1:145328113:145328286:-	0	-
#Deleted in new
chr1	145328944	145328996	ENSG00000162825.16|NBPF20|pc|chr1:145328944:145328996:-	0	-
#Deleted in new
chr1	145329705	145329878	ENSG00000162825.16|NBPF20|pc|chr1:145329705:145329878:-	0	-
#Deleted in new
chr1	145330485	145330537	ENSG00000162825.16|NBPF20|pc|chr1:145330485:145330537:-	0	-
#Deleted in new
chr1	145331256	145331429	ENSG00000162825.16|NBPF20|pc|chr1:145331256:145331429:-	0	-
#Deleted in new
chr1	145332057	145332166	ENSG00000162825.16|NBPF20|pc|chr1:145332057:145332166:-	0	-
#Deleted in new
chr1	145332880	145333053	ENSG00000162825.16|NBPF20|pc|chr1:145332880:145333053:-	0	-
#Deleted in new
chr1	145333697	145333749	ENSG00000162825.16|NBPF20|pc|chr1:145333697:145333749:-	0	-
#Deleted in new
chr1	145334458	145334631	ENSG00000162825.16|NBPF20|pc|chr1:145334458:145334631:-	0	-
#Deleted in new
chr1	145335241	145335293	ENSG00000162825.16|NBPF20|pc|chr1:145335241:145335293:-	0	-
#Deleted in new
chr1	145336012	145336185	ENSG00000162825.16|NBPF20|pc|chr1:145336012:145336185:-	0	-
#Deleted in new
chr1	145336813	145336922	ENSG00000162825.16|NBPF20|pc|chr1:145336813:145336922:-	0	-
#Deleted in new
chr1	145337636	145337809	ENSG00000162825.16|NBPF20|pc|chr1:145337636:145337809:-	0	-
#Deleted in new
chr1	145338453	145338505	ENSG00000162825.16|NBPF20|pc|chr1:145338453:145338505:-	0	-
#Deleted in new
chr1	145339214	145339387	ENSG00000162825.16|NBPF20|pc|chr1:145339214:145339387:-	0	-
#Deleted in new
chr1	145339995	145340047	ENSG00000162825.16|NBPF20|pc|chr1:145339995:145340047:-	0	-
#Deleted in new
chr1	145340766	145340939	ENSG00000162825.16|NBPF20|pc|chr1:145340766:145340939:-	0	-
#Deleted in new
chr1	145341563	145341672	ENSG00000162825.16|NBPF20|pc|chr1:145341563:145341672:-	0	-
#Deleted in new
chr1	145342386	145342559	ENSG00000162825.16|NBPF20|pc|chr1:145342386:145342559:-	0	-
#Deleted in new
chr1	145343207	145343259	ENSG00000162825.16|NBPF20|pc|chr1:145343207:145343259:-	0	-
#Deleted in new
chr1	145343968	145344141	ENSG00000162825.16|NBPF20|pc|chr1:145343968:145344141:-	0	-
#Deleted in new
chr1	145344749	145344801	ENSG00000162825.16|NBPF20|pc|chr1:145344749:145344801:-	0	-
#Deleted in new
chr1	145345520	145345693	ENSG00000162825.16|NBPF20|pc|chr1:145345520:145345693:-	0	-
#Deleted in new
chr1	145346321	145346430	ENSG00000162825.16|NBPF20|pc|chr1:145346321:145346430:-	0	-
#Deleted in new
chr1	145347144	145347317	ENSG00000162825.16|NBPF20|pc|chr1:145347144:145347317:-	0	-
#Deleted in new
chr1	145347977	145348029	ENSG00000162825.16|NBPF20|pc|chr1:145347977:145348029:-	0	-
#Deleted in new
chr1	145348738	145348911	ENSG00000162825.16|NBPF20|pc|chr1:145348738:145348911:-	0	-
#Deleted in new
chr1	145349519	145349571	ENSG00000162825.16|NBPF20|pc|chr1:145349519:145349571:-	0	-
#Deleted in new
chr1	145350290	145350463	ENSG00000162825.16|NBPF20|pc|chr1:145350290:145350463:-	0	-
#Deleted in new
chr1	145351093	145351202	ENSG00000162825.16|NBPF20|pc|chr1:145351093:145351202:-	0	-
#Deleted in new
chr1	145351916	145352089	ENSG00000162825.16|NBPF20|pc|chr1:145351916:145352089:-	0	-
#Deleted in new
chr1	145352741	145352793	ENSG00000162825.16|NBPF20|pc|chr1:145352741:145352793:-	0	-
#Deleted in new
chr1	145353502	145353675	ENSG00000162825.16|NBPF20|pc|chr1:145353502:145353675:-	0	-
#Deleted in new
chr1	145354283	145354335	ENSG00000162825.16|NBPF20|pc|chr1:145354283:145354335:-	0	-
#Deleted in new
chr1	145355054	145355227	ENSG00000162825.16|NBPF20|pc|chr1:145355054:145355227:-	0	-
#Deleted in new
chr1	145355855	145355964	ENSG00000162825.16|NBPF20|pc|chr1:145355855:145355964:-	0	-
#Deleted in new
chr1	145356678	145356851	ENSG00000162825.16|NBPF20|pc|chr1:145356678:145356851:-	0	-
#Deleted in new
chr1	145357489	145357541	ENSG00000162825.16|NBPF20|pc|chr1:145357489:145357541:-	0	-
#Deleted in new
chr1	145358250	145358423	ENSG00000162825.16|NBPF20|pc|chr1:145358250:145358423:-	0	-
#Deleted in new
chr1	145359030	145359082	ENSG00000162825.16|NBPF20|pc|chr1:145359030:145359082:-	0	-
#Deleted in new
chr1	145359801	145359974	ENSG00000162825.16|NBPF20|pc|chr1:145359801:145359974:-	0	-
#Deleted in new
chr1	145360602	145360711	ENSG00000162825.16|NBPF20|pc|chr1:145360602:145360711:-	0	-
#Deleted in new
chr1	145361425	145361598	ENSG00000162825.16|NBPF20|pc|chr1:145361425:145361598:-	0	-
#Deleted in new
chr1	145362242	145362294	ENSG00000162825.16|NBPF20|pc|chr1:145362242:145362294:-	0	-
#Deleted in new
chr1	145363003	145363176	ENSG00000162825.16|NBPF20|pc|chr1:145363003:145363176:-	0	-
#Deleted in new
chr1	145363784	145363836	ENSG00000162825.16|NBPF20|pc|chr1:145363784:145363836:-	0	-
#Deleted in new
chr1	145364555	145364728	ENSG00000162825.16|NBPF20|pc|chr1:145364555:145364728:-	0	-
#Deleted in new
chr1	145365356	145365465	ENSG00000162825.16|NBPF20|pc|chr1:145365356:145365465:-	0	-
#Deleted in new
chr1	145366179	145366352	ENSG00000162825.16|NBPF20|pc|chr1:145366179:145366352:-	0	-
#Deleted in new
chr1	145367002	145367054	ENSG00000162825.16|NBPF20|pc|chr1:145367002:145367054:-	0	-
#Deleted in new
chr1	145367763	145367936	ENSG00000162825.16|NBPF20|pc|chr1:145367763:145367936:-	0	-
#Deleted in new
chr1	145368544	145368596	ENSG00000162825.16|NBPF20|pc|chr1:145368544:145368596:-	0	-
#Deleted in new
chr1	145369315	145369488	ENSG00000162825.16|NBPF20|pc|chr1:145369315:145369488:-	0	-
#Deleted in new
chr1	145370116	145370225	ENSG00000162825.16|NBPF20|pc|chr1:145370116:145370225:-	0	-
#Deleted in new
chr1	145370939	145371112	ENSG00000162825.16|NBPF20|pc|chr1:145370939:145371112:-	0	-
#Deleted in new
chr1	145371750	145371802	ENSG00000162825.16|NBPF20|pc|chr1:145371750:145371802:-	0	-
#Deleted in new
chr1	145372511	145372684	ENSG00000162825.16|NBPF20|pc|chr1:145372511:145372684:-	0	-
#Deleted in new
chr1	145373292	145373344	ENSG00000162825.16|NBPF20|pc|chr1:145373292:145373344:-	0	-
#Deleted in new
chr1	145374063	145374236	ENSG00000162825.16|NBPF20|pc|chr1:145374063:145374236:-	0	-
#Deleted in new
chr1	145374864	145374973	ENSG00000162825.16|NBPF20|pc|chr1:145374864:145374973:-	0	-
#Deleted in new
chr1	145375687	145375860	ENSG00000162825.16|NBPF20|pc|chr1:145375687:145375860:-	0	-
#Deleted in new
chr1	145376504	145376556	ENSG00000162825.16|NBPF20|pc|chr1:145376504:145376556:-	0	-
#Deleted in new
chr1	145377265	145377438	ENSG00000162825.16|NBPF20|pc|chr1:145377265:145377438:-	0	-
#Deleted in new
chr1	145378042	145378094	ENSG00000162825.16|NBPF20|pc|chr1:145378042:145378094:-	0	-
#Deleted in new
chr1	145378813	145378986	ENSG00000162825.16|NBPF20|pc|chr1:145378813:145378986:-	0	-
#Deleted in new
chr1	145379616	145379725	ENSG00000162825.16|NBPF20|pc|chr1:145379616:145379725:-	0	-
#Deleted in new
chr1	145380439	145380612	ENSG00000162825.16|NBPF20|pc|chr1:145380439:145380612:-	0	-
#Deleted in new
chr1	145381256	145381308	ENSG00000162825.16|NBPF20|pc|chr1:145381256:145381308:-	0	-
#Deleted in new
chr1	145382017	145382190	ENSG00000162825.16|NBPF20|pc|chr1:145382017:145382190:-	0	-
#Deleted in new
chr1	145382798	145382850	ENSG00000162825.16|NBPF20|pc|chr1:145382798:145382850:-	0	-
#Deleted in new
chr1	145383569	145383742	ENSG00000162825.16|NBPF20|pc|chr1:145383569:145383742:-	0	-
#Deleted in new
chr1	145384370	145384479	ENSG00000162825.16|NBPF20|pc|chr1:145384370:145384479:-	0	-
#Deleted in new
chr1	145385193	145385366	ENSG00000162825.16|NBPF20|pc|chr1:145385193:145385366:-	0	-
#Deleted in new
chr1	145386012	145386064	ENSG00000162825.16|NBPF20|pc|chr1:145386012:145386064:-	0	-
#Deleted in new
chr1	145386773	145386946	ENSG00000162825.16|NBPF20|pc|chr1:145386773:145386946:-	0	-
#Deleted in new
chr1	145387546	145387598	ENSG00000162825.16|NBPF20|pc|chr1:145387546:145387598:-	0	-
#Deleted in new
chr1	145388317	145388490	ENSG00000162825.16|NBPF20|pc|chr1:145388317:145388490:-	0	-
#Deleted in new
chr1	145389120	145389229	ENSG00000162825.16|NBPF20|pc|chr1:145389120:145389229:-	0	-
#Deleted in new
chr1	145389943	145390116	ENSG00000162825.16|NBPF20|pc|chr1:145389943:145390116:-	0	-
#Deleted in new
chr1	145390768	145390820	ENSG00000162825.16|NBPF20|pc|chr1:145390768:145390820:-	0	-
#Deleted in new
chr1	145391529	145391702	ENSG00000162825.16|NBPF20|pc|chr1:145391529:145391702:-	0	-
#Deleted in new
chr1	145392302	145392354	ENSG00000162825.16|NBPF20|pc|chr1:145392302:145392354:-	0	-
#Deleted in new
chr1	145393073	145393246	ENSG00000162825.16|NBPF20|pc|chr1:145393073:145393246:-	0	-
#Deleted in new
chr1	145393721	145393734	ENSG00000162825.16|NBPF20|pc|chr1:145393721:145393734:-	0	-
#Deleted in new
chr1	145393860	145393935	ENSG00000162825.16|NBPF20|pc|chr1:145393860:145393935:-	0	-
#Deleted in new
chr1	145393883	145393935	ENSG00000162825.16|NBPF20|pc|chr1:145393883:145393935:-	0	-
#Deleted in new
chr1	145394977	145395141	ENSG00000162825.16|NBPF20|pc|chr1:145394977:145395141:-	0	-
#Deleted in new
chr1	145399048	145399100	ENSG00000162825.16|NBPF20|pc|chr1:145399048:145399100:-	0	-
#Deleted in new
chr1	145400385	145400594	ENSG00000162825.16|NBPF20|pc|chr1:145400385:145400594:-	0	-
#Deleted in new
chr1	145400388	145400594	ENSG00000162825.16|NBPF20|pc|chr1:145400388:145400594:-	0	-
#Deleted in new
chr1	145401058	145401131	ENSG00000162825.16|NBPF20|pc|chr1:145401058:145401131:-	0	-
#Deleted in new
chr1	145402166	145402381	ENSG00000162825.16|NBPF20|pc|chr1:145402166:145402381:-	0	-
#Deleted in new
chr1	145403215	145403303	ENSG00000162825.16|NBPF20|pc|chr1:145403215:145403303:-	0	-
#Deleted in new
chr1	145403215	145403318	ENSG00000162825.16|NBPF20|pc|chr1:145403215:145403318:-	0	-
#Deleted in new
chr1	145405097	145405307	ENSG00000162825.16|NBPF20|pc|chr1:145405097:145405307:-	0	-
#Deleted in new
chr1	145405097	145405445	ENSG00000162825.16|NBPF20|pc|chr1:145405097:145405445:-	0	-
#Deleted in new
chr1	145405409	145405567	ENSG00000162825.16|NBPF20|pc|chr1:145405409:145405567:-	0	-
#Deleted in new
chr1	145405681	145405778	ENSG00000162825.16|NBPF20|pc|chr1:145405681:145405778:-	0	-
#Deleted in new
chr11	45513272	45513802	ENSG00000255041.1|AC103855.3|lncRNA|chr11:45513272:45513802:-	0	-
#Deleted in new
chr11	45531215	45531617	ENSG00000254746.5|AC103855.2|lncRNA|chr11:45531215:45531617:-	0	-
#Deleted in new
chr11	45531319	45531617	ENSG00000254746.5|AC103855.2|lncRNA|chr11:45531319:45531617:-	0	-
#Deleted in new
chr11	45531524	45531617	ENSG00000254746.5|AC103855.2|lncRNA|chr11:45531524:45531617:-	0	-
#Deleted in new
chr11	45532648	45532880	ENSG00000254746.5|AC103855.2|lncRNA|chr11:45532648:45532880:-	0	-
#Deleted in new
chr11	45532991	45533125	ENSG00000254746.5|AC103855.2|lncRNA|chr11:45532991:45533125:-	0	-
#Deleted in new
chr11	45533422	45533532	ENSG00000254746.5|AC103855.2|lncRNA|chr11:45533422:45533532:-	0	-
#Deleted in new
chr11	45533422	45533534	ENSG00000254746.5|AC103855.2|lncRNA|chr11:45533422:45533534:-	0	-
#Deleted in new
chr11	45541142	45541269	ENSG00000254746.5|AC103855.2|lncRNA|chr11:45541142:45541269:-	0	-
#Deleted in new
chr11	45582524	45582729	ENSG00000254514.1|AC103855.1|lncRNA|chr11:45582524:45582729:+	0	+
#Deleted in new
chr11	45583115	45583474	ENSG00000254514.1|AC103855.1|lncRNA|chr11:45583115:45583474:+	0	+
#Deleted in new
chr1	145612201	145612247	ENSG00000117262.18|GPR89A|pc|chr1:145612201:145612247:+	0	+
#Deleted in new
chr1	145671591	145671639	ENSG00000174827.13|PDZK1|pc|chr1:145671591:145671639:-	0	-
#Deleted in new
chr1	145691731	145691802	ENSG00000174827.13|PDZK1|pc|chr1:145691731:145691802:-	0	-
#Deleted in new
chr11	4571422	4571629	ENSG00000171987.1|C11orf40|pc|chr11:4571422:4571629:-	0	-
#Deleted in new
chr11	4572155	4572294	ENSG00000171987.1|C11orf40|pc|chr11:4572155:4572294:-	0	-
#Deleted in new
chr11	45723308	45723572	ENSG00000254519.3|AC044839.1|lncRNA|chr11:45723308:45723572:+	0	+
#Deleted in new
chr11	45723319	45723572	ENSG00000254519.3|AC044839.1|lncRNA|chr11:45723319:45723572:+	0	+
#Deleted in new
chr11	45723319	45724553	ENSG00000254519.3|AC044839.1|lncRNA|chr11:45723319:45724553:+	0	+
#Deleted in new
chr11	45723477	45723572	ENSG00000254519.3|AC044839.1|lncRNA|chr11:45723477:45723572:+	0	+
#Deleted in new
chr11	45724161	45724299	ENSG00000254519.3|AC044839.1|lncRNA|chr11:45724161:45724299:+	0	+
#Deleted in new
chr11	45724161	45724551	ENSG00000254519.3|AC044839.1|lncRNA|chr11:45724161:45724551:+	0	+
#Deleted in new
chr1	145724800	145724906	ENSG00000117281.15|CD160|pc|chr1:145724800:145724906:+	0	+
#Deleted in new
chr11	4573305	4573472	ENSG00000171987.1|C11orf40|pc|chr11:4573305:4573472:-	0	-
#Partially deleted in new
chr11	45739409	45739542	ENSG00000254519.3|AC044839.1|lncRNA|chr11:45739409:45739542:+	0	+
#Partially deleted in new
chr11	45739449	45739542	ENSG00000254519.3|AC044839.1|lncRNA|chr11:45739449:45739542:+	0	+
#Deleted in new
chr11	45742423	45742670	ENSG00000254519.3|AC044839.1|lncRNA|chr11:45742423:45742670:+	0	+
#Deleted in new
chr11	45750822	45751208	ENSG00000255226.1|AC044839.2|lncRNA|chr11:45750822:45751208:-	0	-
#Deleted in new
chr11	45751105	45751208	ENSG00000255226.1|AC044839.2|lncRNA|chr11:45751105:45751208:-	0	-
#Partially deleted in new
chr1	145771710	145773843	ENSG00000265491.4|RNF115|pc|chr1:145771710:145773843:-	0	-
#Deleted in new
chr11	4577679	4577820	ENSG00000171987.1|C11orf40|pc|chr11:4577679:4577820:-	0	-
#Deleted in new
chr11	45823860	45824142	ENSG00000255447.1|AC044839.4|lncRNA|chr11:45823860:45824142:+	0	+
#Deleted in new
chr11	45825127	45825258	ENSG00000255447.1|AC044839.4|lncRNA|chr11:45825127:45825258:+	0	+
#Partially deleted in new
chr1	145839514	145839784	ENSG00000186141.8|POLR3C|pc|chr1:145839514:145839784:+	0	+
#Partially deleted in new
chr11	458673	460288	ENSG00000174915.11|PTDSS2|pc|chr11:458673:460288:+	0	+
#Duplicated in new
chr11	4586871	4593340	ENSG00000226288.2|OR52I2|pc|chr11:4586871:4593340:+	0	+
#Deleted in new
chr11	458860	459111	ENSG00000174915.11|PTDSS2|pc|chr11:458860:459111:+	0	+
#Deleted in new
chr11	45911898	45912015	ENSG00000121680.15|PEX16|pc|chr11:45911898:45912015:-	0	-
#Deleted in new
chr1	145919186	145919306	ENSG00000265241.6|RBM8A|pc|chr1:145919186:145919306:-	0	-
#Split in new
chr1	145921555	145925927	ENSG00000265241.6|RBM8A|pc|chr1:145921555:145925927:-	0	-
#Deleted in new
chr1	145921631	145921833	ENSG00000265241.6|RBM8A|pc|chr1:145921631:145921833:-	0	-
#Deleted in new
chr1	145927598	145927678	ENSG00000265241.6|RBM8A|pc|chr1:145927598:145927678:-	0	-
#Deleted in new
chr1	145927602	145927794	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145927602:145927794:+	0	+
#Deleted in new
chr1	145932083	145932159	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145932083:145932159:+	0	+
#Deleted in new
chr1	145934252	145934390	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145934252:145934390:+	0	+
#Deleted in new
chr11	45935120	45935157	ENSG00000135365.15|PHF21A|pc|chr11:45935120:45935157:-	0	-
#Partially deleted in new
chr11	45935120	45935246	ENSG00000135365.15|PHF21A|pc|chr11:45935120:45935246:-	0	-
#Deleted in new
chr1	145937356	145937464	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145937356:145937464:+	0	+
#Deleted in new
chr1	145939823	145940066	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145939823:145940066:+	0	+
#Deleted in new
chr1	145941111	145941194	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145941111:145941194:+	0	+
#Deleted in new
chr1	145941111	145941203	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145941111:145941203:+	0	+
#Deleted in new
chr1	145941111	145941206	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145941111:145941206:+	0	+
#Deleted in new
chr1	145941111	145941227	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145941111:145941227:+	0	+
#Deleted in new
chr1	145941127	145941227	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145941127:145941227:+	0	+
#Deleted in new
chr1	145941195	145941227	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145941195:145941227:+	0	+
#Deleted in new
chr1	145941904	145942081	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145941904:145942081:+	0	+
#Deleted in new
chr1	145941904	145942249	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145941904:145942249:+	0	+
#Deleted in new
chr1	145947096	145947145	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145947096:145947145:+	0	+
#Partially deleted in new
chr1	145947096	145947361	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145947096:145947361:+	0	+
#Deleted in new
chr1	145950188	145950335	ENSG00000234222.6|LIX1L-AS1|lncRNA|chr1:145950188:145950335:+	0	+
#Partially deleted in new
chr11	460186	461051	ENSG00000174915.11|PTDSS2|pc|chr11:460186:461051:+	0	+
#Deleted in new
chr1	146036657	146036746	ENSG00000168509.19|HFE2|pc|chr1:146036657:146036746:-	0	-
#Deleted in new
chr1	146052565	146052948	ENSG00000233396.7|LINC01719|lncRNA|chr1:146052565:146052948:+	0	+
#Deleted in new
chr1	146052602	146052948	ENSG00000233396.7|LINC01719|lncRNA|chr1:146052602:146052948:+	0	+
#Deleted in new
chr1	146052621	146052948	ENSG00000233396.7|LINC01719|lncRNA|chr1:146052621:146052948:+	0	+
#Deleted in new
chr1	146052637	146052948	ENSG00000233396.7|LINC01719|lncRNA|chr1:146052637:146052948:+	0	+
#Deleted in new
chr1	146057232	146057304	ENSG00000233396.7|LINC01719|lncRNA|chr1:146057232:146057304:+	0	+
#Deleted in new
chr1	146057693	146057988	ENSG00000233396.7|LINC01719|lncRNA|chr1:146057693:146057988:+	0	+
#Deleted in new
chr1	146058312	146058461	ENSG00000233396.7|LINC01719|lncRNA|chr1:146058312:146058461:+	0	+
#Deleted in new
chr1	146058557	146058678	ENSG00000233396.7|LINC01719|lncRNA|chr1:146058557:146058678:+	0	+
#Deleted in new
chr1	146058557	146058838	ENSG00000233396.7|LINC01719|lncRNA|chr1:146058557:146058838:+	0	+
#Deleted in new
chr1	146058557	146059662	ENSG00000233396.7|LINC01719|lncRNA|chr1:146058557:146059662:+	0	+
#Deleted in new
chr1	146058995	146059356	ENSG00000233396.7|LINC01719|lncRNA|chr1:146058995:146059356:+	0	+
#Deleted in new
chr1	146061494	146061705	ENSG00000233396.7|LINC01719|lncRNA|chr1:146061494:146061705:+	0	+
#Deleted in new
chr1	146061494	146061706	ENSG00000233396.7|LINC01719|lncRNA|chr1:146061494:146061706:+	0	+
#Deleted in new
chr1	146061494	146061948	ENSG00000233396.7|LINC01719|lncRNA|chr1:146061494:146061948:+	0	+
#Deleted in new
chr1	146064698	146066561	ENSG00000271425.7|NBPF10|pc|chr1:146064698:146066561:-	0	-
#Deleted in new
chr1	146066317	146066561	ENSG00000271425.7|NBPF10|pc|chr1:146066317:146066561:-	0	-
#Deleted in new
chr1	146067179	146067288	ENSG00000271425.7|NBPF10|pc|chr1:146067179:146067288:-	0	-
#Deleted in new
chr1	146068002	146068175	ENSG00000271425.7|NBPF10|pc|chr1:146068002:146068175:-	0	-
#Deleted in new
chr1	146068771	146068823	ENSG00000271425.7|NBPF10|pc|chr1:146068771:146068823:-	0	-
#Deleted in new
chr1	146069542	146069715	ENSG00000271425.7|NBPF10|pc|chr1:146069542:146069715:-	0	-
#Deleted in new
chr1	146070323	146070432	ENSG00000271425.7|NBPF10|pc|chr1:146070323:146070432:-	0	-
#Deleted in new
chr1	146071146	146071319	ENSG00000271425.7|NBPF10|pc|chr1:146071146:146071319:-	0	-
#Deleted in new
chr1	146071967	146072019	ENSG00000271425.7|NBPF10|pc|chr1:146071967:146072019:-	0	-
#Deleted in new
chr1	146072728	146072901	ENSG00000271425.7|NBPF10|pc|chr1:146072728:146072901:-	0	-
#Deleted in new
chr1	146073499	146073551	ENSG00000271425.7|NBPF10|pc|chr1:146073499:146073551:-	0	-
#Deleted in new
chr1	146074270	146074443	ENSG00000271425.7|NBPF10|pc|chr1:146074270:146074443:-	0	-
#Deleted in new
chr1	146074270	146074504	ENSG00000271425.7|NBPF10|pc|chr1:146074270:146074504:-	0	-
#Deleted in new
chr1	146074571	146074717	ENSG00000271425.7|NBPF10|pc|chr1:146074571:146074717:-	0	-
#Deleted in new
chr1	146075045	146075154	ENSG00000271425.7|NBPF10|pc|chr1:146075045:146075154:-	0	-
#Deleted in new
chr1	146075868	146076041	ENSG00000271425.7|NBPF10|pc|chr1:146075868:146076041:-	0	-
#Deleted in new
chr11	460760	460879	ENSG00000174915.11|PTDSS2|pc|chr11:460760:460879:+	0	+
#Deleted in new
chr1	146076705	146076757	ENSG00000271425.7|NBPF10|pc|chr1:146076705:146076757:-	0	-
#Deleted in new
chr1	146077466	146077639	ENSG00000271425.7|NBPF10|pc|chr1:146077466:146077639:-	0	-
#Deleted in new
chr1	146078235	146078287	ENSG00000271425.7|NBPF10|pc|chr1:146078235:146078287:-	0	-
#Deleted in new
chr1	146079006	146079179	ENSG00000271425.7|NBPF10|pc|chr1:146079006:146079179:-	0	-
#Deleted in new
chr1	146079781	146079890	ENSG00000271425.7|NBPF10|pc|chr1:146079781:146079890:-	0	-
#Deleted in new
chr1	146080604	146080777	ENSG00000271425.7|NBPF10|pc|chr1:146080604:146080777:-	0	-
#Deleted in new
chr1	146081435	146081487	ENSG00000271425.7|NBPF10|pc|chr1:146081435:146081487:-	0	-
#Deleted in new
chr1	146082196	146082369	ENSG00000271425.7|NBPF10|pc|chr1:146082196:146082369:-	0	-
#Deleted in new
chr1	146082965	146083017	ENSG00000271425.7|NBPF10|pc|chr1:146082965:146083017:-	0	-
#Deleted in new
chr1	146083736	146083909	ENSG00000271425.7|NBPF10|pc|chr1:146083736:146083909:-	0	-
#Deleted in new
chr1	146084517	146084626	ENSG00000271425.7|NBPF10|pc|chr1:146084517:146084626:-	0	-
#Deleted in new
chr1	146085340	146085513	ENSG00000271425.7|NBPF10|pc|chr1:146085340:146085513:-	0	-
#Deleted in new
chr1	146086163	146086215	ENSG00000271425.7|NBPF10|pc|chr1:146086163:146086215:-	0	-
#Deleted in new
chr1	146086923	146087096	ENSG00000271425.7|NBPF10|pc|chr1:146086923:146087096:-	0	-
#Deleted in new
chr1	146087692	146087744	ENSG00000271425.7|NBPF10|pc|chr1:146087692:146087744:-	0	-
#Deleted in new
chr1	146088463	146088636	ENSG00000271425.7|NBPF10|pc|chr1:146088463:146088636:-	0	-
#Deleted in new
chr1	146089238	146089347	ENSG00000271425.7|NBPF10|pc|chr1:146089238:146089347:-	0	-
#Deleted in new
chr1	146090061	146090234	ENSG00000271425.7|NBPF10|pc|chr1:146090061:146090234:-	0	-
#Deleted in new
chr1	146090880	146090932	ENSG00000271425.7|NBPF10|pc|chr1:146090880:146090932:-	0	-
#Deleted in new
chr1	146091641	146091814	ENSG00000271425.7|NBPF10|pc|chr1:146091641:146091814:-	0	-
#Deleted in new
chr1	146092410	146092462	ENSG00000271425.7|NBPF10|pc|chr1:146092410:146092462:-	0	-
#Deleted in new
chr1	146093181	146093354	ENSG00000271425.7|NBPF10|pc|chr1:146093181:146093354:-	0	-
#Deleted in new
chr1	146093956	146094065	ENSG00000271425.7|NBPF10|pc|chr1:146093956:146094065:-	0	-
#Deleted in new
chr1	146094779	146094952	ENSG00000271425.7|NBPF10|pc|chr1:146094779:146094952:-	0	-
#Deleted in new
chr1	146095602	146095654	ENSG00000271425.7|NBPF10|pc|chr1:146095602:146095654:-	0	-
#Deleted in new
chr1	146096363	146096536	ENSG00000271425.7|NBPF10|pc|chr1:146096363:146096536:-	0	-
#Deleted in new
chr1	146097132	146097184	ENSG00000271425.7|NBPF10|pc|chr1:146097132:146097184:-	0	-
#Deleted in new
chr1	146097903	146098076	ENSG00000271425.7|NBPF10|pc|chr1:146097903:146098076:-	0	-
#Deleted in new
chr1	146098678	146098787	ENSG00000271425.7|NBPF10|pc|chr1:146098678:146098787:-	0	-
#Deleted in new
chr1	146099501	146099674	ENSG00000271425.7|NBPF10|pc|chr1:146099501:146099674:-	0	-
#Deleted in new
chr1	146100324	146100376	ENSG00000271425.7|NBPF10|pc|chr1:146100324:146100376:-	0	-
#Deleted in new
chr1	146101085	146101258	ENSG00000271425.7|NBPF10|pc|chr1:146101085:146101258:-	0	-
#Deleted in new
chr1	146101854	146101906	ENSG00000271425.7|NBPF10|pc|chr1:146101854:146101906:-	0	-
#Deleted in new
chr1	146102625	146102798	ENSG00000271425.7|NBPF10|pc|chr1:146102625:146102798:-	0	-
#Deleted in new
chr1	146103400	146103509	ENSG00000271425.7|NBPF10|pc|chr1:146103400:146103509:-	0	-
#Deleted in new
chr1	146104223	146104396	ENSG00000271425.7|NBPF10|pc|chr1:146104223:146104396:-	0	-
#Deleted in new
chr1	146105042	146105094	ENSG00000271425.7|NBPF10|pc|chr1:146105042:146105094:-	0	-
#Deleted in new
chr1	146105803	146105976	ENSG00000271425.7|NBPF10|pc|chr1:146105803:146105976:-	0	-
#Deleted in new
chr1	146106572	146106624	ENSG00000271425.7|NBPF10|pc|chr1:146106572:146106624:-	0	-
#Deleted in new
chr1	146107343	146107516	ENSG00000271425.7|NBPF10|pc|chr1:146107343:146107516:-	0	-
#Deleted in new
chr1	146108118	146108227	ENSG00000271425.7|NBPF10|pc|chr1:146108118:146108227:-	0	-
#Deleted in new
chr1	146108941	146109114	ENSG00000271425.7|NBPF10|pc|chr1:146108941:146109114:-	0	-
#Deleted in new
chr1	146109750	146109802	ENSG00000271425.7|NBPF10|pc|chr1:146109750:146109802:-	0	-
#Deleted in new
chr1	146110511	146110684	ENSG00000271425.7|NBPF10|pc|chr1:146110511:146110684:-	0	-
#Deleted in new
chr1	146111280	146111332	ENSG00000271425.7|NBPF10|pc|chr1:146111280:146111332:-	0	-
#Deleted in new
chr1	146112053	146112226	ENSG00000271425.7|NBPF10|pc|chr1:146112053:146112226:-	0	-
#Deleted in new
chr1	146112828	146112937	ENSG00000271425.7|NBPF10|pc|chr1:146112828:146112937:-	0	-
#Deleted in new
chr1	146113651	146113824	ENSG00000213240.8|AC239799.1|pc|chr1:146113651:146113824:-	0	-
#Deleted in new
chr1	146113651	146113824	ENSG00000271425.7|NBPF10|pc|chr1:146113651:146113824:-	0	-
#Deleted in new
chr1	146114468	146114520	ENSG00000213240.8|AC239799.1|pc|chr1:146114468:146114520:-	0	-
#Deleted in new
chr1	146114468	146114520	ENSG00000271425.7|NBPF10|pc|chr1:146114468:146114520:-	0	-
#Deleted in new
chr1	146115229	146115402	ENSG00000271425.7|NBPF10|pc|chr1:146115229:146115402:-	0	-
#Deleted in new
chr1	146115998	146116050	ENSG00000271425.7|NBPF10|pc|chr1:146115998:146116050:-	0	-
#Deleted in new
chr1	146116771	146116944	ENSG00000271425.7|NBPF10|pc|chr1:146116771:146116944:-	0	-
#Deleted in new
chr1	146117546	146117655	ENSG00000271425.7|NBPF10|pc|chr1:146117546:146117655:-	0	-
#Deleted in new
chr1	146118369	146118542	ENSG00000271425.7|NBPF10|pc|chr1:146118369:146118542:-	0	-
#Deleted in new
chr1	146119194	146119246	ENSG00000271425.7|NBPF10|pc|chr1:146119194:146119246:-	0	-
#Deleted in new
chr1	146119955	146120128	ENSG00000271425.7|NBPF10|pc|chr1:146119955:146120128:-	0	-
#Deleted in new
chr1	146120724	146120776	ENSG00000271425.7|NBPF10|pc|chr1:146120724:146120776:-	0	-
#Deleted in new
chr1	146121497	146121670	ENSG00000213240.8|AC239799.1|pc|chr1:146121497:146121670:-	0	-
#Deleted in new
chr1	146121497	146121670	ENSG00000271425.7|NBPF10|pc|chr1:146121497:146121670:-	0	-
#Deleted in new
chr1	146122282	146122391	ENSG00000271425.7|NBPF10|pc|chr1:146122282:146122391:-	0	-
#Deleted in new
chr1	146123105	146123278	ENSG00000271425.7|NBPF10|pc|chr1:146123105:146123278:-	0	-
#Deleted in new
chr1	146123926	146123978	ENSG00000271425.7|NBPF10|pc|chr1:146123926:146123978:-	0	-
#Deleted in new
chr1	146124687	146124860	ENSG00000271425.7|NBPF10|pc|chr1:146124687:146124860:-	0	-
#Deleted in new
chr1	146125464	146125516	ENSG00000271425.7|NBPF10|pc|chr1:146125464:146125516:-	0	-
#Deleted in new
chr1	146126235	146126408	ENSG00000271425.7|NBPF10|pc|chr1:146126235:146126408:-	0	-
#Deleted in new
chr1	146127027	146127079	ENSG00000213240.8|AC239799.1|pc|chr1:146127027:146127079:-	0	-
#Deleted in new
chr1	146127027	146127079	ENSG00000271425.7|NBPF10|pc|chr1:146127027:146127079:-	0	-
#Deleted in new
chr1	146128118	146128282	ENSG00000213240.8|AC239799.1|pc|chr1:146128118:146128282:-	0	-
#Deleted in new
chr1	146128118	146128282	ENSG00000271425.7|NBPF10|pc|chr1:146128118:146128282:-	0	-
#Deleted in new
chr1	146132185	146132237	ENSG00000213240.8|AC239799.1|pc|chr1:146132185:146132237:-	0	-
#Deleted in new
chr1	146132185	146132237	ENSG00000271425.7|NBPF10|pc|chr1:146132185:146132237:-	0	-
#Deleted in new
chr1	146133522	146133728	ENSG00000213240.8|AC239799.1|pc|chr1:146133522:146133728:-	0	-
#Deleted in new
chr1	146133522	146133728	ENSG00000271425.7|NBPF10|pc|chr1:146133522:146133728:-	0	-
#Deleted in new
chr1	146134192	146134265	ENSG00000213240.8|AC239799.1|pc|chr1:146134192:146134265:-	0	-
#Deleted in new
chr1	146134192	146134265	ENSG00000271425.7|NBPF10|pc|chr1:146134192:146134265:-	0	-
#Deleted in new
chr1	146135306	146135521	ENSG00000213240.8|AC239799.1|pc|chr1:146135306:146135521:-	0	-
#Deleted in new
chr1	146135306	146135521	ENSG00000271425.7|NBPF10|pc|chr1:146135306:146135521:-	0	-
#Deleted in new
chr1	146136352	146136455	ENSG00000213240.8|AC239799.1|pc|chr1:146136352:146136455:-	0	-
#Deleted in new
chr1	146136352	146136455	ENSG00000271425.7|NBPF10|pc|chr1:146136352:146136455:-	0	-
#Deleted in new
chr1	146138235	146138445	ENSG00000213240.8|AC239799.1|pc|chr1:146138235:146138445:-	0	-
#Deleted in new
chr1	146138235	146138445	ENSG00000271425.7|NBPF10|pc|chr1:146138235:146138445:-	0	-
#Deleted in new
chr1	146139808	146140020	ENSG00000213240.8|AC239799.1|pc|chr1:146139808:146140020:-	0	-
#Deleted in new
chr1	146139808	146140020	ENSG00000271425.7|NBPF10|pc|chr1:146139808:146140020:-	0	-
#Deleted in new
chr1	146140483	146140556	ENSG00000213240.8|AC239799.1|pc|chr1:146140483:146140556:-	0	-
#Deleted in new
chr1	146140483	146140556	ENSG00000271425.7|NBPF10|pc|chr1:146140483:146140556:-	0	-
#Deleted in new
chr1	146141603	146141818	ENSG00000213240.8|AC239799.1|pc|chr1:146141603:146141818:-	0	-
#Deleted in new
chr1	146141603	146141818	ENSG00000271425.7|NBPF10|pc|chr1:146141603:146141818:-	0	-
#Deleted in new
chr1	146142649	146142752	ENSG00000213240.8|AC239799.1|pc|chr1:146142649:146142752:-	0	-
#Deleted in new
chr1	146142649	146142752	ENSG00000271425.7|NBPF10|pc|chr1:146142649:146142752:-	0	-
#Deleted in new
chr1	146144594	146144804	ENSG00000213240.8|AC239799.1|pc|chr1:146144594:146144804:-	0	-
#Deleted in new
chr1	146144594	146144804	ENSG00000271425.7|NBPF10|pc|chr1:146144594:146144804:-	0	-
#Deleted in new
chr1	146144906	146145061	ENSG00000213240.8|AC239799.1|pc|chr1:146144906:146145061:-	0	-
#Deleted in new
chr1	146146202	146146320	ENSG00000264343.5|NOTCH2NL|pc|chr1:146146202:146146320:-	0	-
#Deleted in new
chr1	146146520	146147395	ENSG00000264343.5|NOTCH2NL|pc|chr1:146146520:146147395:-	0	-
#Deleted in new
chr1	146147325	146147395	ENSG00000264343.5|NOTCH2NL|pc|chr1:146147325:146147395:-	0	-
#Deleted in new
chr1	146147664	146147747	ENSG00000264343.5|NOTCH2NL|pc|chr1:146147664:146147747:-	0	-
#Deleted in new
chr1	146147664	146147754	ENSG00000264343.5|NOTCH2NL|pc|chr1:146147664:146147754:-	0	-
#Deleted in new
chr11	46171946	46172024	ENSG00000255314.2|AC024475.4|lncRNA|chr11:46171946:46172024:+	0	+
#Deleted in new
chr11	46174584	46174690	ENSG00000255314.2|AC024475.4|lncRNA|chr11:46174584:46174690:+	0	+
#Deleted in new
chr11	46213823	46214224	ENSG00000255269.2|AC024475.3|lncRNA|chr11:46213823:46214224:-	0	-
#Deleted in new
chr11	46213827	46214224	ENSG00000255269.2|AC024475.3|lncRNA|chr11:46213827:46214224:-	0	-
#Deleted in new
chr11	46214099	46214224	ENSG00000255269.2|AC024475.3|lncRNA|chr11:46214099:46214224:-	0	-
#Deleted in new
chr11	46215726	46215891	ENSG00000255269.2|AC024475.3|lncRNA|chr11:46215726:46215891:-	0	-
#Deleted in new
chr11	46219580	46219655	ENSG00000255269.2|AC024475.3|lncRNA|chr11:46219580:46219655:-	0	-
#Deleted in new
chr11	46219771	46219854	ENSG00000255269.2|AC024475.3|lncRNA|chr11:46219771:46219854:-	0	-
#Deleted in new
chr11	46219941	46220229	ENSG00000255269.2|AC024475.3|lncRNA|chr11:46219941:46220229:-	0	-
#Deleted in new
chr11	46220362	46220438	ENSG00000255269.2|AC024475.3|lncRNA|chr11:46220362:46220438:-	0	-
#Deleted in new
chr11	46256354	46256541	ENSG00000255007.1|LINC02489|lncRNA|chr11:46256354:46256541:-	0	-
#Deleted in new
chr11	462929	463041	ENSG00000255237.1|AC138230.1|lncRNA|chr11:462929:463041:-	0	-
#Deleted in new
chr11	463347	463899	ENSG00000255237.1|AC138230.1|lncRNA|chr11:463347:463899:-	0	-
#Deleted in new
chr1	146385	146509	ENSG00000241860.6|AL627309.5|lncRNA|chr1:146385:146509:-	0	-
#Deleted in new
chr1	146385	149707	ENSG00000241860.6|AL627309.5|lncRNA|chr1:146385:149707:-	0	-
#Partially deleted in new
chr1	146524727	146525289	ENSG00000277420.1|AC245407.1|lncRNA|chr1:146524727:146525289:+	0	+
#Deleted in new
chr11	46530582	46530607	ENSG00000110497.14|AMBRA1|pc|chr11:46530582:46530607:-	0	-
#Deleted in new
chr11	46546070	46546117	ENSG00000110497.14|AMBRA1|pc|chr11:46546070:46546117:-	0	-
#Deleted in new
chr11	46549019	46549051	ENSG00000110497.14|AMBRA1|pc|chr11:46549019:46549051:-	0	-
#Deleted in new
chr11	46591124	46591364	ENSG00000110497.14|AMBRA1|pc|chr11:46591124:46591364:-	0	-
#Deleted in new
chr11	46591124	46591423	ENSG00000110497.14|AMBRA1|pc|chr11:46591124:46591423:-	0	-
#Deleted in new
chr11	46621041	46621157	ENSG00000175224.16|ATG13|pc|chr11:46621041:46621157:+	0	+
#Deleted in new
chr11	46621059	46621157	ENSG00000175224.16|ATG13|pc|chr11:46621059:46621157:+	0	+
#Deleted in new
chr11	46625300	46625417	ENSG00000175224.16|ATG13|pc|chr11:46625300:46625417:+	0	+
#Deleted in new
chr11	46625320	46625364	ENSG00000175224.16|ATG13|pc|chr11:46625320:46625364:+	0	+
#Deleted in new
chr11	46629906	46630022	ENSG00000175224.16|ATG13|pc|chr11:46629906:46630022:+	0	+
#Deleted in new
chr11	46629906	46630028	ENSG00000175224.16|ATG13|pc|chr11:46629906:46630028:+	0	+
#Deleted in new
chr11	46630044	46630100	ENSG00000175224.16|ATG13|pc|chr11:46630044:46630100:+	0	+
#Deleted in new
chr11	46630896	46630991	ENSG00000175224.16|ATG13|pc|chr11:46630896:46630991:+	0	+
#Deleted in new
chr11	46632322	46632459	ENSG00000175224.16|ATG13|pc|chr11:46632322:46632459:+	0	+
#Deleted in new
chr11	46638498	46638610	ENSG00000175224.16|ATG13|pc|chr11:46638498:46638610:+	0	+
#Deleted in new
chr1	146641	146831	ENSG00000241860.6|AL627309.5|lncRNA|chr1:146641:146831:-	0	-
#Deleted in new
chr11	46648726	46648867	ENSG00000175224.16|ATG13|pc|chr11:46648726:46648867:+	0	+
#Split in new
chr1	1468383	1470158	ENSG00000215915.9|ATAD3C|pc|chr1:1468383:1470158:+	0	+
#Deleted in new
chr11	46852851	46852946	ENSG00000247675.6|LRP4-AS1|lncRNA|chr11:46852851:46852946:+	0	+
#Deleted in new
chr1	146943290	146943562	ENSG00000268043.7|NBPF12|pc|chr1:146943290:146943562:+	0	+
#Deleted in new
chr1	146949313	146949422	ENSG00000268043.7|NBPF12|pc|chr1:146949313:146949422:+	0	+
#Deleted in new
chr1	146959858	146960006	ENSG00000268043.7|NBPF12|pc|chr1:146959858:146960006:+	0	+
#Deleted in new
chr1	146959970	146960006	ENSG00000268043.7|NBPF12|pc|chr1:146959970:146960006:+	0	+
#Deleted in new
chr1	146959970	146960011	ENSG00000268043.7|NBPF12|pc|chr1:146959970:146960011:+	0	+
#Deleted in new
chr1	146959970	146960224	ENSG00000268043.7|NBPF12|pc|chr1:146959970:146960224:+	0	+
#Deleted in new
chr1	146960108	146960318	ENSG00000268043.7|NBPF12|pc|chr1:146960108:146960318:+	0	+
#Deleted in new
chr1	146962160	146962263	ENSG00000268043.7|NBPF12|pc|chr1:146962160:146962263:+	0	+
#Deleted in new
chr1	146963094	146963309	ENSG00000268043.7|NBPF12|pc|chr1:146963094:146963309:+	0	+
#Deleted in new
chr1	146964356	146964429	ENSG00000268043.7|NBPF12|pc|chr1:146964356:146964429:+	0	+
#Deleted in new
chr1	146964892	146964988	ENSG00000268043.7|NBPF12|pc|chr1:146964892:146964988:+	0	+
#Deleted in new
chr1	146964892	146965104	ENSG00000268043.7|NBPF12|pc|chr1:146964892:146965104:+	0	+
#Deleted in new
chr1	146966463	146966673	ENSG00000268043.7|NBPF12|pc|chr1:146966463:146966673:+	0	+
#Deleted in new
chr1	146966579	146966673	ENSG00000268043.7|NBPF12|pc|chr1:146966579:146966673:+	0	+
#Deleted in new
chr1	146968447	146968550	ENSG00000268043.7|NBPF12|pc|chr1:146968447:146968550:+	0	+
#Deleted in new
chr1	146969381	146969596	ENSG00000268043.7|NBPF12|pc|chr1:146969381:146969596:+	0	+
#Deleted in new
chr1	146970646	146970719	ENSG00000268043.7|NBPF12|pc|chr1:146970646:146970719:+	0	+
#Deleted in new
chr1	146971182	146971394	ENSG00000268043.7|NBPF12|pc|chr1:146971182:146971394:+	0	+
#Deleted in new
chr1	146971278	146971394	ENSG00000268043.7|NBPF12|pc|chr1:146971278:146971394:+	0	+
#Deleted in new
chr1	146972750	146972960	ENSG00000268043.7|NBPF12|pc|chr1:146972750:146972960:+	0	+
#Deleted in new
chr1	146974738	146974841	ENSG00000268043.7|NBPF12|pc|chr1:146974738:146974841:+	0	+
#Deleted in new
chr1	146975676	146975891	ENSG00000268043.7|NBPF12|pc|chr1:146975676:146975891:+	0	+
#Deleted in new
chr1	146976928	146977001	ENSG00000268043.7|NBPF12|pc|chr1:146976928:146977001:+	0	+
#Deleted in new
chr1	146977465	146977671	ENSG00000268043.7|NBPF12|pc|chr1:146977465:146977671:+	0	+
#Deleted in new
chr1	146978958	146979010	ENSG00000268043.7|NBPF12|pc|chr1:146978958:146979010:+	0	+
#Deleted in new
chr1	146982927	146983091	ENSG00000268043.7|NBPF12|pc|chr1:146982927:146983091:+	0	+
#Deleted in new
chr1	146984133	146984185	ENSG00000268043.7|NBPF12|pc|chr1:146984133:146984185:+	0	+
#Deleted in new
chr1	146984812	146984985	ENSG00000268043.7|NBPF12|pc|chr1:146984812:146984985:+	0	+
#Deleted in new
chr1	146985704	146985756	ENSG00000268043.7|NBPF12|pc|chr1:146985704:146985756:+	0	+
#Deleted in new
chr1	146986351	146986524	ENSG00000268043.7|NBPF12|pc|chr1:146986351:146986524:+	0	+
#Deleted in new
chr1	146987233	146987285	ENSG00000268043.7|NBPF12|pc|chr1:146987233:146987285:+	0	+
#Deleted in new
chr1	146987953	146988008	ENSG00000268043.7|NBPF12|pc|chr1:146987953:146988008:+	0	+
#Deleted in new
chr1	146987953	146988126	ENSG00000268043.7|NBPF12|pc|chr1:146987953:146988126:+	0	+
#Deleted in new
chr1	146988012	146988126	ENSG00000268043.7|NBPF12|pc|chr1:146988012:146988126:+	0	+
#Deleted in new
chr1	146988840	146988949	ENSG00000268043.7|NBPF12|pc|chr1:146988840:146988949:+	0	+
#Deleted in new
chr1	146989573	146989746	ENSG00000268043.7|NBPF12|pc|chr1:146989573:146989746:+	0	+
#Deleted in new
chr1	146990465	146990517	ENSG00000268043.7|NBPF12|pc|chr1:146990465:146990517:+	0	+
#Deleted in new
chr1	146991112	146991285	ENSG00000268043.7|NBPF12|pc|chr1:146991112:146991285:+	0	+
#Deleted in new
chr1	146991994	146992046	ENSG00000268043.7|NBPF12|pc|chr1:146991994:146992046:+	0	+
#Deleted in new
chr1	146992711	146992884	ENSG00000268043.7|NBPF12|pc|chr1:146992711:146992884:+	0	+
#Deleted in new
chr1	146993598	146993707	ENSG00000268043.7|NBPF12|pc|chr1:146993598:146993707:+	0	+
#Deleted in new
chr1	146994331	146994601	ENSG00000268043.7|NBPF12|pc|chr1:146994331:146994601:+	0	+
#Deleted in new
chr1	146994331	146996093	ENSG00000268043.7|NBPF12|pc|chr1:146994331:146996093:+	0	+
#Deleted in new
chr1	146994331	146996197	ENSG00000268043.7|NBPF12|pc|chr1:146994331:146996197:+	0	+
#Deleted in new
chr1	146994331	146996198	ENSG00000268043.7|NBPF12|pc|chr1:146994331:146996198:+	0	+
#Deleted in new
chr1	146994331	146996202	ENSG00000268043.7|NBPF12|pc|chr1:146994331:146996202:+	0	+
#Deleted in new
chr1	147001930	147002332	ENSG00000234225.2|AC244394.2|lncRNA|chr1:147001930:147002332:-	0	-
#Deleted in new
chr1	147002281	147002332	ENSG00000234225.2|AC244394.2|lncRNA|chr1:147002281:147002332:-	0	-
#Deleted in new
chr1	147002428	147002577	ENSG00000234225.2|AC244394.2|lncRNA|chr1:147002428:147002577:-	0	-
#Deleted in new
chr1	147002896	147003184	ENSG00000234225.2|AC244394.2|lncRNA|chr1:147002896:147003184:-	0	-
#Deleted in new
chr1	147002896	147003191	ENSG00000234225.2|AC244394.2|lncRNA|chr1:147002896:147003191:-	0	-
#Deleted in new
chr1	147003580	147003618	ENSG00000234225.2|AC244394.2|lncRNA|chr1:147003580:147003618:-	0	-
#Deleted in new
chr11	47004364	47004456	ENSG00000149179.13|C11orf49|pc|chr11:47004364:47004456:+	0	+
#Deleted in new
chr11	47103701	47103811	ENSG00000149179.13|C11orf49|pc|chr11:47103701:47103811:+	0	+
#Deleted in new
chr11	47123103	47123341	ENSG00000255520.1|AC090589.2|lncRNA|chr11:47123103:47123341:-	0	-
#Deleted in new
chr11	47159632	47159811	ENSG00000149179.13|C11orf49|pc|chr11:47159632:47159811:+	0	+
#Deleted in new
chr11	47169295	47169563	ENSG00000270060.1|AC090589.3|lncRNA|chr11:47169295:47169563:-	0	-
#Deleted in new
chr1	147172770	147173559	ENSG00000237188.3|AC242426.3|lncRNA|chr1:147172770:147173559:+	0	+
#Deleted in new
chr1	147173185	147173559	ENSG00000273071.1|AC242426.4|lncRNA|chr1:147173185:147173559:+	0	+
#Deleted in new
chr1	147173371	147173559	ENSG00000237188.3|AC242426.3|lncRNA|chr1:147173371:147173559:+	0	+
#Deleted in new
chr1	147173384	147173559	ENSG00000237188.3|AC242426.3|lncRNA|chr1:147173384:147173559:+	0	+
#Deleted in new
chr1	147174423	147174585	ENSG00000237188.3|AC242426.3|lncRNA|chr1:147174423:147174585:+	0	+
#Deleted in new
chr1	147174423	147174585	ENSG00000273071.1|AC242426.4|lncRNA|chr1:147174423:147174585:+	0	+
#Deleted in new
chr1	147174423	147175205	ENSG00000237188.3|AC242426.3|lncRNA|chr1:147174423:147175205:+	0	+
#Deleted in new
chr1	147174502	147174585	ENSG00000237188.3|AC242426.3|lncRNA|chr1:147174502:147174585:+	0	+
#Deleted in new
chr1	147175350	147176390	ENSG00000131781.12|FMO5|pc|chr1:147175350:147176390:-	0	-
#Deleted in new
chr11	47214464	47214674	ENSG00000134574.11|DDB2|pc|chr11:47214464:47214674:+	0	+
#Deleted in new
chr11	47214569	47214674	ENSG00000134574.11|DDB2|pc|chr11:47214569:47214674:+	0	+
#Deleted in new
chr11	47221689	47221751	ENSG00000256897.1|AC018410.2|lncRNA|chr11:47221689:47221751:-	0	-
#Deleted in new
chr1	147225728	147225873	ENSG00000131781.12|FMO5|pc|chr1:147225728:147225873:-	0	-
#Deleted in new
chr11	47237618	47237712	ENSG00000134574.11|DDB2|pc|chr11:47237618:47237712:+	0	+
#Deleted in new
chr11	47250465	47250551	ENSG00000025434.18|NR1H3|pc|chr11:47250465:47250551:+	0	+
#Deleted in new
chr11	47335577	47335625	ENSG00000134571.10|MYBPC3|pc|chr11:47335577:47335625:-	0	-
#Deleted in new
chr11	47405509	47405547	ENSG00000255197.5|AC090559.1|lncRNA|chr11:47405509:47405547:-	0	-
#Deleted in new
chr1	147408589	147408689	ENSG00000278811.4|LINC00624|lncRNA|chr1:147408589:147408689:-	0	-
#Deleted in new
chr11	47494330	47494443	ENSG00000149187.18|CELF1|pc|chr11:47494330:47494443:-	0	-
#Deleted in new
chr11	47494330	47494521	ENSG00000149187.18|CELF1|pc|chr11:47494330:47494521:-	0	-
#Deleted in new
chr11	47506857	47506897	ENSG00000149187.18|CELF1|pc|chr11:47506857:47506897:-	0	-
#Deleted in new
chr11	47513604	47513994	ENSG00000270072.1|AC090559.2|lncRNA|chr11:47513604:47513994:-	0	-
#Partially deleted in new
chr1	147517442	147517875	ENSG00000278811.4|LINC00624|lncRNA|chr1:147517442:147517875:-	0	-
#Deleted in new
chr11	47564350	47564469	ENSG00000149187.18|CELF1|pc|chr11:47564350:47564469:-	0	-
#Partially deleted in new
chr11	47580834	47581848	ENSG00000213619.9|NDUFS3|pc|chr11:47580834:47581848:+	0	+
#Deleted in new
chr11	47581175	47581303	ENSG00000213619.9|NDUFS3|pc|chr11:47581175:47581303:+	0	+
#Deleted in new
chr11	4767269	4767341	ENSG00000167346.7|MMP26|pc|chr11:4767269:4767341:+	0	+
#Deleted in new
chr1	147697793	147697849	ENSG00000227139.1|AC241644.1|lncRNA|chr1:147697793:147697849:+	0	+
#Deleted in new
chr1	147698945	147699335	ENSG00000227139.1|AC241644.1|lncRNA|chr1:147698945:147699335:+	0	+
#Partially deleted in new
chr11	47705099	47705917	ENSG00000165923.15|AGBL2|pc|chr11:47705099:47705917:-	0	-
#Deleted in new
chr11	47705520	47705634	ENSG00000165923.15|AGBL2|pc|chr11:47705520:47705634:-	0	-
#Deleted in new
chr11	47710213	47710312	ENSG00000165923.15|AGBL2|pc|chr11:47710213:47710312:-	0	-
#Deleted in new
chr11	47786988	47787079	ENSG00000030066.13|NUP160|pc|chr11:47786988:47787079:-	0	-
#Deleted in new
chr1	147788607	147788953	ENSG00000234190.1|AC241644.2|lncRNA|chr1:147788607:147788953:+	0	+
#Partially deleted in new
chr1	1478025	1478745	ENSG00000160072.19|ATAD3B|pc|chr1:1478025:1478745:+	0	+
#Deleted in new
chr11	47827074	47827194	ENSG00000030066.13|NUP160|pc|chr11:47827074:47827194:-	0	-
#Deleted in new
chr1	148011798	148012228	ENSG00000273059.1|AC239803.2|lncRNA|chr1:148011798:148012228:+	0	+
#Deleted in new
chr11	480124	480594	ENSG00000174915.11|PTDSS2|pc|chr11:480124:480594:+	0	+
#Deleted in new
chr11	48015826	48015855	ENSG00000254879.1|PTPRJ-AS1|lncRNA|chr11:48015826:48015855:-	0	-
#Deleted in new
chr1	148021849	148021998	ENSG00000274372.4|AC239803.3|lncRNA|chr1:148021849:148021998:+	0	+
#Deleted in new
chr1	148024435	148024719	ENSG00000274372.4|AC239803.3|lncRNA|chr1:148024435:148024719:+	0	+
#Deleted in new
chr1	148024529	148024719	ENSG00000274372.4|AC239803.3|lncRNA|chr1:148024529:148024719:+	0	+
#Deleted in new
chr1	148025776	148025931	ENSG00000274372.4|AC239803.3|lncRNA|chr1:148025776:148025931:+	0	+
#Deleted in new
chr11	48046229	48046331	ENSG00000149177.12|PTPRJ|pc|chr11:48046229:48046331:+	0	+
#Deleted in new
chr1	148102045	148103912	ENSG00000263956.6|NBPF11|pc|chr1:148102045:148103912:-	0	-
#Deleted in new
chr1	148102046	148103912	ENSG00000263956.6|NBPF11|pc|chr1:148102046:148103912:-	0	-
#Deleted in new
chr1	148102150	148103912	ENSG00000263956.6|NBPF11|pc|chr1:148102150:148103912:-	0	-
#Deleted in new
chr1	148104536	148104645	ENSG00000263956.6|NBPF11|pc|chr1:148104536:148104645:-	0	-
#Deleted in new
chr1	148104582	148104645	ENSG00000263956.6|NBPF11|pc|chr1:148104582:148104645:-	0	-
#Deleted in new
chr1	148105359	148105528	ENSG00000263956.6|NBPF11|pc|chr1:148105359:148105528:-	0	-
#Deleted in new
chr1	148106180	148106232	ENSG00000263956.6|NBPF11|pc|chr1:148106180:148106232:-	0	-
#Deleted in new
chr1	148106941	148107114	ENSG00000263956.6|NBPF11|pc|chr1:148106941:148107114:-	0	-
#Deleted in new
chr1	148107710	148107762	ENSG00000263956.6|NBPF11|pc|chr1:148107710:148107762:-	0	-
#Deleted in new
chr1	148108481	148108654	ENSG00000263956.6|NBPF11|pc|chr1:148108481:148108654:-	0	-
#Deleted in new
chr1	148109283	148109335	ENSG00000263956.6|NBPF11|pc|chr1:148109283:148109335:-	0	-
#Deleted in new
chr1	148109283	148109411	ENSG00000263956.6|NBPF11|pc|chr1:148109283:148109411:-	0	-
#Deleted in new
chr1	148110377	148110541	ENSG00000263956.6|NBPF11|pc|chr1:148110377:148110541:-	0	-
#Deleted in new
chr11	48112746	48112983	ENSG00000149177.12|PTPRJ|pc|chr11:48112746:48112983:+	0	+
#Deleted in new
chr1	148114436	148114488	ENSG00000263956.6|NBPF11|pc|chr1:148114436:148114488:-	0	-
#Deleted in new
chr1	148115792	148115998	ENSG00000263956.6|NBPF11|pc|chr1:148115792:148115998:-	0	-
#Deleted in new
chr1	148116462	148116535	ENSG00000263956.6|NBPF11|pc|chr1:148116462:148116535:-	0	-
#Deleted in new
chr1	148117571	148117786	ENSG00000263956.6|NBPF11|pc|chr1:148117571:148117786:-	0	-
#Deleted in new
chr1	148118619	148118722	ENSG00000263956.6|NBPF11|pc|chr1:148118619:148118722:-	0	-
#Deleted in new
chr1	148120500	148120710	ENSG00000263956.6|NBPF11|pc|chr1:148120500:148120710:-	0	-
#Deleted in new
chr1	148122054	148122266	ENSG00000263956.6|NBPF11|pc|chr1:148122054:148122266:-	0	-
#Deleted in new
chr1	148122728	148122801	ENSG00000263956.6|NBPF11|pc|chr1:148122728:148122801:-	0	-
#Deleted in new
chr1	148123852	148124067	ENSG00000263956.6|NBPF11|pc|chr1:148123852:148124067:-	0	-
#Deleted in new
chr1	148124898	148125001	ENSG00000263956.6|NBPF11|pc|chr1:148124898:148125001:-	0	-
#Deleted in new
chr1	148126828	148126884	ENSG00000263956.6|NBPF11|pc|chr1:148126828:148126884:-	0	-
#Deleted in new
chr1	148126828	148127038	ENSG00000263956.6|NBPF11|pc|chr1:148126828:148127038:-	0	-
#Deleted in new
chr1	148126886	148127003	ENSG00000263956.6|NBPF11|pc|chr1:148126886:148127003:-	0	-
#Deleted in new
chr1	148127140	148127288	ENSG00000263956.6|NBPF11|pc|chr1:148127140:148127288:-	0	-
#Deleted in new
chr11	48131510	48132720	ENSG00000149177.12|PTPRJ|pc|chr11:48131510:48132720:+	0	+
#Deleted in new
chr1	148137710	148137802	ENSG00000263956.6|NBPF11|pc|chr1:148137710:148137802:-	0	-
#Deleted in new
chr1	148137710	148137809	ENSG00000263956.6|NBPF11|pc|chr1:148137710:148137809:-	0	-
#Deleted in new
chr1	148143414	148143686	ENSG00000263956.6|NBPF11|pc|chr1:148143414:148143686:-	0	-
#Partially deleted in new
chr1	148159212	148162859	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148159212:148162859:-	0	-
#Deleted in new
chr1	148186164	148186630	ENSG00000232265.7|AC239803.1|lncRNA|chr1:148186164:148186630:+	0	+
#Deleted in new
chr1	148199994	148200094	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148199994:148200094:-	0	-
#Deleted in new
chr1	148199999	148200094	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148199999:148200094:-	0	-
#Deleted in new
chr1	148200530	148200553	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148200530:148200553:-	0	-
#Deleted in new
chr1	148200530	148200633	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148200530:148200633:-	0	-
#Deleted in new
chr1	148201407	148201478	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148201407:148201478:-	0	-
#Deleted in new
chr1	148206494	148206633	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148206494:148206633:-	0	-
#Deleted in new
chr1	148206595	148206633	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148206595:148206633:-	0	-
#Deleted in new
chr1	148206601	148206633	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148206601:148206633:-	0	-
#Partially deleted in new
chr1	148208087	148208654	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148208087:148208654:-	0	-
#Partially deleted in new
chr1	148208090	148208654	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148208090:148208654:-	0	-
#Partially deleted in new
chr1	148208093	148208654	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148208093:148208654:-	0	-
#Partially deleted in new
chr1	148208095	148208654	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148208095:148208654:-	0	-
#Deleted in new
chr1	148208532	148208654	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148208532:148208654:-	0	-
#Deleted in new
chr1	148208587	148208654	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148208587:148208654:-	0	-
#Deleted in new
chr1	148246294	148246463	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148246294:148246463:-	0	-
#Deleted in new
chr1	148246628	148246686	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148246628:148246686:-	0	-
#Deleted in new
chr1	148246628	148246764	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148246628:148246764:-	0	-
#Deleted in new
chr1	148246628	148247108	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148246628:148247108:-	0	-
#Deleted in new
chr1	148254928	148255012	ENSG00000227733.9|AC239809.3|lncRNA|chr1:148254928:148255012:-	0	-
#Deleted in new
chr1	148271883	148272035	ENSG00000234283.1|LINC01731|lncRNA|chr1:148271883:148272035:-	0	-
#Deleted in new
chr1	148272899	148273083	ENSG00000234283.1|LINC01731|lncRNA|chr1:148272899:148273083:-	0	-
#Deleted in new
chr1	148280665	148280749	ENSG00000234283.1|LINC01731|lncRNA|chr1:148280665:148280749:-	0	-
#Deleted in new
chr1	148290888	148291301	ENSG00000274020.2|LINC01138|lncRNA|chr1:148290888:148291301:-	0	-
#Deleted in new
chr1	148290888	148291304	ENSG00000274020.2|LINC01138|lncRNA|chr1:148290888:148291304:-	0	-
#Deleted in new
chr1	148290889	148291301	ENSG00000274020.2|LINC01138|lncRNA|chr1:148290889:148291301:-	0	-
#Deleted in new
chr1	148295179	148295296	ENSG00000238107.1|AC245100.6|lncRNA|chr1:148295179:148295296:+	0	+
#Deleted in new
chr1	148295749	148295913	ENSG00000274020.2|LINC01138|lncRNA|chr1:148295749:148295913:-	0	-
#Deleted in new
chr1	148295755	148297556	ENSG00000238107.1|AC245100.6|lncRNA|chr1:148295755:148297556:+	0	+
#Deleted in new
chr1	148296123	148296182	ENSG00000274020.2|LINC01138|lncRNA|chr1:148296123:148296182:-	0	-
#Deleted in new
chr1	148296272	148296499	ENSG00000274020.2|LINC01138|lncRNA|chr1:148296272:148296499:-	0	-
#Deleted in new
chr1	148296272	148296776	ENSG00000274020.2|LINC01138|lncRNA|chr1:148296272:148296776:-	0	-
#Deleted in new
chr1	148297128	148297271	ENSG00000274020.2|LINC01138|lncRNA|chr1:148297128:148297271:-	0	-
#Deleted in new
chr11	48327658	48327673	ENSG00000176547.9|OR4C3|pc|chr11:48327658:48327673:+	0	+
#Deleted in new
chr11	48328464	48328471	ENSG00000176547.9|OR4C3|pc|chr11:48328464:48328471:+	0	+
#Deleted in new
chr1	148328998	148329362	ENSG00000224481.1|AC245100.1|lncRNA|chr1:148328998:148329362:+	0	+
#Deleted in new
chr1	148329525	148330084	ENSG00000224481.1|AC245100.1|lncRNA|chr1:148329525:148330084:+	0	+
#Deleted in new
chr1	148333213	148333278	ENSG00000274020.2|LINC01138|lncRNA|chr1:148333213:148333278:-	0	-
#Deleted in new
chr1	148333878	148334113	ENSG00000274020.2|LINC01138|lncRNA|chr1:148333878:148334113:-	0	-
#Deleted in new
chr1	148335898	148335919	ENSG00000274020.2|LINC01138|lncRNA|chr1:148335898:148335919:-	0	-
#Deleted in new
chr1	148343861	148344094	ENSG00000274020.2|LINC01138|lncRNA|chr1:148343861:148344094:-	0	-
#Split in new
chr1	1483484	1485171	ENSG00000160072.19|ATAD3B|pc|chr1:1483484:1485171:+	0	+
#Deleted in new
chr1	148358244	148358686	ENSG00000272824.1|AC245100.7|lncRNA|chr1:148358244:148358686:-	0	-
#Deleted in new
chr1	148362994	148363386	ENSG00000274020.2|LINC01138|lncRNA|chr1:148362994:148363386:-	0	-
#Deleted in new
chr1	148369317	148369426	ENSG00000274020.2|LINC01138|lncRNA|chr1:148369317:148369426:-	0	-
#Deleted in new
chr1	148378055	148379554	ENSG00000274020.2|LINC01138|lncRNA|chr1:148378055:148379554:-	0	-
#Deleted in new
chr1	148388742	148388974	ENSG00000274020.2|LINC01138|lncRNA|chr1:148388742:148388974:-	0	-
#Deleted in new
chr1	148432955	148433643	ENSG00000274020.2|LINC01138|lncRNA|chr1:148432955:148433643:-	0	-
#Deleted in new
chr1	148432958	148433643	ENSG00000274020.2|LINC01138|lncRNA|chr1:148432958:148433643:-	0	-
#Deleted in new
chr1	148463387	148463542	ENSG00000274020.2|LINC01138|lncRNA|chr1:148463387:148463542:-	0	-
#Split in new
chr1	148479823	148483679	ENSG00000236334.2|PPIAL4G|pc|chr1:148479823:148483679:-	0	-
#Deleted in new
chr1	148487743	148487816	ENSG00000274020.2|LINC01138|lncRNA|chr1:148487743:148487816:-	0	-
#Deleted in new
chr1	148519472	148519604	ENSG00000274020.2|LINC01138|lncRNA|chr1:148519472:148519604:-	0	-
#Deleted in new
chr1	148531384	148533248	ENSG00000270629.5|NBPF14|pc|chr1:148531384:148533248:-	0	-
#Deleted in new
chr1	148532117	148533248	ENSG00000270629.5|NBPF14|pc|chr1:148532117:148533248:-	0	-
#Deleted in new
chr1	148532978	148533248	ENSG00000270629.5|NBPF14|pc|chr1:148532978:148533248:-	0	-
#Deleted in new
chr1	148532979	148533248	ENSG00000270629.5|NBPF14|pc|chr1:148532979:148533248:-	0	-
#Deleted in new
chr1	148533860	148533969	ENSG00000270629.5|NBPF14|pc|chr1:148533860:148533969:-	0	-
#Deleted in new
chr1	148534683	148534856	ENSG00000270629.5|NBPF14|pc|chr1:148534683:148534856:-	0	-
#Deleted in new
chr1	148535452	148535504	ENSG00000270629.5|NBPF14|pc|chr1:148535452:148535504:-	0	-
#Deleted in new
chr1	148536223	148536396	ENSG00000270629.5|NBPF14|pc|chr1:148536223:148536396:-	0	-
#Deleted in new
chr1	148537010	148537119	ENSG00000270629.5|NBPF14|pc|chr1:148537010:148537119:-	0	-
#Deleted in new
chr1	148537833	148538006	ENSG00000270629.5|NBPF14|pc|chr1:148537833:148538006:-	0	-
#Deleted in new
chr1	148538648	148538700	ENSG00000270629.5|NBPF14|pc|chr1:148538648:148538700:-	0	-
#Deleted in new
chr1	148539409	148539582	ENSG00000270629.5|NBPF14|pc|chr1:148539409:148539582:-	0	-
#Deleted in new
chr1	148540178	148540230	ENSG00000270629.5|NBPF14|pc|chr1:148540178:148540230:-	0	-
#Deleted in new
chr1	148540949	148541122	ENSG00000270629.5|NBPF14|pc|chr1:148540949:148541122:-	0	-
#Deleted in new
chr1	148541730	148541839	ENSG00000270629.5|NBPF14|pc|chr1:148541730:148541839:-	0	-
#Deleted in new
chr1	148542553	148542726	ENSG00000270629.5|NBPF14|pc|chr1:148542553:148542726:-	0	-
#Deleted in new
chr1	148543362	148543414	ENSG00000270629.5|NBPF14|pc|chr1:148543362:148543414:-	0	-
#Deleted in new
chr1	148544123	148544296	ENSG00000270629.5|NBPF14|pc|chr1:148544123:148544296:-	0	-
#Deleted in new
chr1	148544892	148544944	ENSG00000270629.5|NBPF14|pc|chr1:148544892:148544944:-	0	-
#Deleted in new
chr1	148545663	148545836	ENSG00000270629.5|NBPF14|pc|chr1:148545663:148545836:-	0	-
#Deleted in new
chr1	148546444	148546553	ENSG00000270629.5|NBPF14|pc|chr1:148546444:148546553:-	0	-
#Deleted in new
chr1	148547267	148547440	ENSG00000270629.5|NBPF14|pc|chr1:148547267:148547440:-	0	-
#Deleted in new
chr1	148548070	148548122	ENSG00000270629.5|NBPF14|pc|chr1:148548070:148548122:-	0	-
#Deleted in new
chr1	148548831	148549004	ENSG00000270629.5|NBPF14|pc|chr1:148548831:148549004:-	0	-
#Deleted in new
chr1	148549600	148549652	ENSG00000270629.5|NBPF14|pc|chr1:148549600:148549652:-	0	-
#Deleted in new
chr1	148550371	148550544	ENSG00000270629.5|NBPF14|pc|chr1:148550371:148550544:-	0	-
#Deleted in new
chr1	148551152	148551261	ENSG00000270629.5|NBPF14|pc|chr1:148551152:148551261:-	0	-
#Deleted in new
chr1	148551975	148552148	ENSG00000270629.5|NBPF14|pc|chr1:148551975:148552148:-	0	-
#Deleted in new
chr1	148552778	148552830	ENSG00000270629.5|NBPF14|pc|chr1:148552778:148552830:-	0	-
#Deleted in new
chr1	148553539	148553712	ENSG00000270629.5|NBPF14|pc|chr1:148553539:148553712:-	0	-
#Deleted in new
chr1	148554308	148554360	ENSG00000270629.5|NBPF14|pc|chr1:148554308:148554360:-	0	-
#Deleted in new
chr1	148555079	148555252	ENSG00000270629.5|NBPF14|pc|chr1:148555079:148555252:-	0	-
#Deleted in new
chr1	148555866	148555975	ENSG00000270629.5|NBPF14|pc|chr1:148555866:148555975:-	0	-
#Deleted in new
chr1	148556689	148556862	ENSG00000270629.5|NBPF14|pc|chr1:148556689:148556862:-	0	-
#Deleted in new
chr1	148557490	148557542	ENSG00000270629.5|NBPF14|pc|chr1:148557490:148557542:-	0	-
#Deleted in new
chr1	148558251	148558424	ENSG00000270629.5|NBPF14|pc|chr1:148558251:148558424:-	0	-
#Deleted in new
chr1	148559020	148559072	ENSG00000270629.5|NBPF14|pc|chr1:148559020:148559072:-	0	-
#Deleted in new
chr1	148559792	148559965	ENSG00000270629.5|NBPF14|pc|chr1:148559792:148559965:-	0	-
#Deleted in new
chr1	148560583	148560692	ENSG00000270629.5|NBPF14|pc|chr1:148560583:148560692:-	0	-
#Deleted in new
chr1	148561406	148561579	ENSG00000270629.5|NBPF14|pc|chr1:148561406:148561579:-	0	-
#Deleted in new
chr1	148562235	148562287	ENSG00000270629.5|NBPF14|pc|chr1:148562235:148562287:-	0	-
#Deleted in new
chr1	148562996	148563169	ENSG00000270629.5|NBPF14|pc|chr1:148562996:148563169:-	0	-
#Deleted in new
chr1	148563765	148563817	ENSG00000270629.5|NBPF14|pc|chr1:148563765:148563817:-	0	-
#Deleted in new
chr1	148564538	148564711	ENSG00000270629.5|NBPF14|pc|chr1:148564538:148564711:-	0	-
#Deleted in new
chr1	148565319	148565428	ENSG00000270629.5|NBPF14|pc|chr1:148565319:148565428:-	0	-
#Deleted in new
chr1	148566142	148566315	ENSG00000270629.5|NBPF14|pc|chr1:148566142:148566315:-	0	-
#Deleted in new
chr1	148566951	148567003	ENSG00000270629.5|NBPF14|pc|chr1:148566951:148567003:-	0	-
#Deleted in new
chr1	148567712	148567885	ENSG00000270629.5|NBPF14|pc|chr1:148567712:148567885:-	0	-
#Deleted in new
chr1	148568481	148568533	ENSG00000270629.5|NBPF14|pc|chr1:148568481:148568533:-	0	-
#Deleted in new
chr1	148569254	148569427	ENSG00000270629.5|NBPF14|pc|chr1:148569254:148569427:-	0	-
#Deleted in new
chr1	148570041	148570150	ENSG00000270629.5|NBPF14|pc|chr1:148570041:148570150:-	0	-
#Deleted in new
chr1	148570864	148571037	ENSG00000270629.5|NBPF14|pc|chr1:148570864:148571037:-	0	-
#Deleted in new
chr1	148571681	148571733	ENSG00000270629.5|NBPF14|pc|chr1:148571681:148571733:-	0	-
#Deleted in new
chr1	148572442	148572615	ENSG00000270629.5|NBPF14|pc|chr1:148572442:148572615:-	0	-
#Deleted in new
chr1	148573229	148573338	ENSG00000270629.5|NBPF14|pc|chr1:148573229:148573338:-	0	-
#Deleted in new
chr1	148574052	148574225	ENSG00000270629.5|NBPF14|pc|chr1:148574052:148574225:-	0	-
#Deleted in new
chr1	148574877	148574929	ENSG00000270629.5|NBPF14|pc|chr1:148574877:148574929:-	0	-
#Deleted in new
chr1	148575638	148575811	ENSG00000270629.5|NBPF14|pc|chr1:148575638:148575811:-	0	-
#Deleted in new
chr1	148576409	148576461	ENSG00000270629.5|NBPF14|pc|chr1:148576409:148576461:-	0	-
#Deleted in new
chr1	148577182	148577355	ENSG00000270629.5|NBPF14|pc|chr1:148577182:148577355:-	0	-
#Deleted in new
chr1	148577982	148578034	ENSG00000270629.5|NBPF14|pc|chr1:148577982:148578034:-	0	-
#Duplicated in new
chr1	1485781	1486235	ENSG00000160072.19|ATAD3B|pc|chr1:1485781:1486235:+	0	+
#Deleted in new
chr1	148579073	148579237	ENSG00000270629.5|NBPF14|pc|chr1:148579073:148579237:-	0	-
#Deleted in new
chr1	148583140	148583192	ENSG00000270629.5|NBPF14|pc|chr1:148583140:148583192:-	0	-
#Deleted in new
chr1	148584470	148584676	ENSG00000270629.5|NBPF14|pc|chr1:148584470:148584676:-	0	-
#Deleted in new
chr1	148585140	148585213	ENSG00000270629.5|NBPF14|pc|chr1:148585140:148585213:-	0	-
#Deleted in new
chr1	148586254	148586469	ENSG00000270629.5|NBPF14|pc|chr1:148586254:148586469:-	0	-
#Deleted in new
chr1	148587300	148587403	ENSG00000270629.5|NBPF14|pc|chr1:148587300:148587403:-	0	-
#Deleted in new
chr1	148589183	148589364	ENSG00000270629.5|NBPF14|pc|chr1:148589183:148589364:-	0	-
#Deleted in new
chr1	148589183	148589393	ENSG00000270629.5|NBPF14|pc|chr1:148589183:148589393:-	0	-
#Deleted in new
chr1	148590756	148590968	ENSG00000270629.5|NBPF14|pc|chr1:148590756:148590968:-	0	-
#Deleted in new
chr1	148591431	148591504	ENSG00000270629.5|NBPF14|pc|chr1:148591431:148591504:-	0	-
#Deleted in new
chr1	148592551	148592766	ENSG00000270629.5|NBPF14|pc|chr1:148592551:148592766:-	0	-
#Deleted in new
chr1	148593597	148593685	ENSG00000270629.5|NBPF14|pc|chr1:148593597:148593685:-	0	-
#Deleted in new
chr1	148593597	148593700	ENSG00000270629.5|NBPF14|pc|chr1:148593597:148593700:-	0	-
#Deleted in new
chr1	148593644	148593700	ENSG00000270629.5|NBPF14|pc|chr1:148593644:148593700:-	0	-
#Deleted in new
chr1	148595542	148595595	ENSG00000270629.5|NBPF14|pc|chr1:148595542:148595595:-	0	-
#Deleted in new
chr1	148595542	148595717	ENSG00000270629.5|NBPF14|pc|chr1:148595542:148595717:-	0	-
#Deleted in new
chr1	148595542	148595752	ENSG00000270629.5|NBPF14|pc|chr1:148595542:148595752:-	0	-
#Deleted in new
chr1	148595542	148595890	ENSG00000270629.5|NBPF14|pc|chr1:148595542:148595890:-	0	-
#Deleted in new
chr1	148595597	148595752	ENSG00000270629.5|NBPF14|pc|chr1:148595597:148595752:-	0	-
#Deleted in new
chr1	148595723	148595890	ENSG00000270629.5|NBPF14|pc|chr1:148595723:148595890:-	0	-
#Deleted in new
chr1	148595849	148595890	ENSG00000270629.5|NBPF14|pc|chr1:148595849:148595890:-	0	-
#Deleted in new
chr1	148595854	148595890	ENSG00000270629.5|NBPF14|pc|chr1:148595854:148595890:-	0	-
#Deleted in new
chr1	148595854	148596011	ENSG00000270629.5|NBPF14|pc|chr1:148595854:148596011:-	0	-
#Deleted in new
chr1	148598273	148598343	ENSG00000270629.5|NBPF14|pc|chr1:148598273:148598343:-	0	-
#Deleted in new
chr1	148598612	148598695	ENSG00000270629.5|NBPF14|pc|chr1:148598612:148598695:-	0	-
#Deleted in new
chr1	148915506	148915750	ENSG00000178104.19|PDE4DIP|pc|chr1:148915506:148915750:+	0	+
#Split in new
chr1	1489203	1490671	ENSG00000160072.19|ATAD3B|pc|chr1:1489203:1490671:+	0	+
#Deleted in new
chr1	1489691	1489811	ENSG00000160072.19|ATAD3B|pc|chr1:1489691:1489811:+	0	+
#Deleted in new
chr1	149025661	149025804	ENSG00000255148.2|AC239802.2|lncRNA|chr1:149025661:149025804:-	0	-
#Deleted in new
chr1	149025920	149026269	ENSG00000255148.2|AC239802.2|lncRNA|chr1:149025920:149026269:-	0	-
#Deleted in new
chr11	49027500	49027639	ENSG00000182053.12|TRIM49B|pc|chr11:49027500:49027639:+	0	+
#Deleted in new
chr11	49028789	49028975	ENSG00000182053.12|TRIM49B|pc|chr11:49028789:49028975:+	0	+
#Deleted in new
chr11	49028856	49028975	ENSG00000182053.12|TRIM49B|pc|chr11:49028856:49028975:+	0	+
#Deleted in new
chr11	49032275	49032371	ENSG00000182053.12|TRIM49B|pc|chr11:49032275:49032371:+	0	+
#Deleted in new
chr11	49035094	49035117	ENSG00000182053.12|TRIM49B|pc|chr11:49035094:49035117:+	0	+
#Deleted in new
chr11	49036300	49036398	ENSG00000182053.12|TRIM49B|pc|chr11:49036300:49036398:+	0	+
#Duplicated in new
chr11	49037477	49038029	ENSG00000182053.12|TRIM49B|pc|chr11:49037477:49038029:+	0	+
#Deleted in new
chr1	149046558	149046630	ENSG00000178104.19|PDE4DIP|pc|chr1:149046558:149046630:+	0	+
#Deleted in new
chr1	149046558	149046787	ENSG00000178104.19|PDE4DIP|pc|chr1:149046558:149046787:+	0	+
#Deleted in new
chr1	149046592	149046630	ENSG00000178104.19|PDE4DIP|pc|chr1:149046592:149046630:+	0	+
#Deleted in new
chr1	149047013	149047314	ENSG00000178104.19|PDE4DIP|pc|chr1:149047013:149047314:+	0	+
#Deleted in new
chr1	149047019	149047267	ENSG00000178104.19|PDE4DIP|pc|chr1:149047019:149047267:+	0	+
#Deleted in new
chr1	149047019	149047314	ENSG00000178104.19|PDE4DIP|pc|chr1:149047019:149047314:+	0	+
#Deleted in new
chr1	149047638	149047788	ENSG00000178104.19|PDE4DIP|pc|chr1:149047638:149047788:+	0	+
#Deleted in new
chr1	149047884	149048058	ENSG00000178104.19|PDE4DIP|pc|chr1:149047884:149048058:+	0	+
#Deleted in new
chr1	149047884	149048286	ENSG00000178104.19|PDE4DIP|pc|chr1:149047884:149048286:+	0	+
#Deleted in new
chr1	149048575	149048990	ENSG00000254539.1|AC239804.1|lncRNA|chr1:149048575:149048990:+	0	+
#Deleted in new
chr1	149050819	149051273	ENSG00000254539.1|AC239804.1|lncRNA|chr1:149050819:149051273:+	0	+
#Deleted in new
chr1	149054026	149055899	ENSG00000269713.7|NBPF9|pc|chr1:149054026:149055899:-	0	-
#Deleted in new
chr1	149054032	149055899	ENSG00000269713.7|NBPF9|pc|chr1:149054032:149055899:-	0	-
#Deleted in new
chr1	149054137	149055899	ENSG00000269713.7|NBPF9|pc|chr1:149054137:149055899:-	0	-
#Deleted in new
chr11	49055309	49055407	ENSG00000214891.9|TRIM64C|pc|chr11:49055309:49055407:-	0	-
#Deleted in new
chr1	149055629	149055899	ENSG00000269713.7|NBPF9|pc|chr1:149055629:149055899:-	0	-
#Deleted in new
chr11	49056358	49056381	ENSG00000214891.9|TRIM64C|pc|chr11:49056358:49056381:-	0	-
#Deleted in new
chr1	149056511	149056620	ENSG00000269713.7|NBPF9|pc|chr1:149056511:149056620:-	0	-
#Deleted in new
chr1	149057334	149057507	ENSG00000269713.7|NBPF9|pc|chr1:149057334:149057507:-	0	-
#Deleted in new
chr1	149058163	149058215	ENSG00000269713.7|NBPF9|pc|chr1:149058163:149058215:-	0	-
#Deleted in new
chr1	149058924	149059097	ENSG00000269713.7|NBPF9|pc|chr1:149058924:149059097:-	0	-
#Deleted in new
chr1	149059699	149059808	ENSG00000269713.7|NBPF9|pc|chr1:149059699:149059808:-	0	-
#Deleted in new
chr1	149059762	149059808	ENSG00000269713.7|NBPF9|pc|chr1:149059762:149059808:-	0	-
#Deleted in new
chr1	149060522	149060695	ENSG00000269713.7|NBPF9|pc|chr1:149060522:149060695:-	0	-
#Deleted in new
chr1	149060522	149061383	ENSG00000269713.7|NBPF9|pc|chr1:149060522:149061383:-	0	-
#Deleted in new
chr1	149061331	149061383	ENSG00000269713.7|NBPF9|pc|chr1:149061331:149061383:-	0	-
#Deleted in new
chr1	149062092	149062265	ENSG00000269713.7|NBPF9|pc|chr1:149062092:149062265:-	0	-
#Deleted in new
chr1	149062861	149062913	ENSG00000269713.7|NBPF9|pc|chr1:149062861:149062913:-	0	-
#Deleted in new
chr1	149063632	149063805	ENSG00000269713.7|NBPF9|pc|chr1:149063632:149063805:-	0	-
#Deleted in new
chr1	149064430	149064482	ENSG00000269713.7|NBPF9|pc|chr1:149064430:149064482:-	0	-
#Deleted in new
chr1	149064430	149066634	ENSG00000269713.7|NBPF9|pc|chr1:149064430:149066634:-	0	-
#Deleted in new
chr1	149065525	149065689	ENSG00000269713.7|NBPF9|pc|chr1:149065525:149065689:-	0	-
#Deleted in new
chr1	149065636	149065689	ENSG00000269713.7|NBPF9|pc|chr1:149065636:149065689:-	0	-
#Deleted in new
chr1	149069593	149069645	ENSG00000269713.7|NBPF9|pc|chr1:149069593:149069645:-	0	-
#Deleted in new
chr1	149070933	149071139	ENSG00000269713.7|NBPF9|pc|chr1:149070933:149071139:-	0	-
#Deleted in new
chr1	149071603	149071676	ENSG00000269713.7|NBPF9|pc|chr1:149071603:149071676:-	0	-
#Deleted in new
chr1	149072717	149072932	ENSG00000269713.7|NBPF9|pc|chr1:149072717:149072932:-	0	-
#Deleted in new
chr1	149073767	149073870	ENSG00000269713.7|NBPF9|pc|chr1:149073767:149073870:-	0	-
#Deleted in new
chr1	149075654	149075864	ENSG00000269713.7|NBPF9|pc|chr1:149075654:149075864:-	0	-
#Deleted in new
chr1	149075654	149075866	ENSG00000269713.7|NBPF9|pc|chr1:149075654:149075866:-	0	-
#Deleted in new
chr1	149077207	149077419	ENSG00000269713.7|NBPF9|pc|chr1:149077207:149077419:-	0	-
#Deleted in new
chr1	149077882	149077955	ENSG00000269713.7|NBPF9|pc|chr1:149077882:149077955:-	0	-
#Deleted in new
chr1	149079006	149079221	ENSG00000269713.7|NBPF9|pc|chr1:149079006:149079221:-	0	-
#Deleted in new
chr1	149080052	149080155	ENSG00000269713.7|NBPF9|pc|chr1:149080052:149080155:-	0	-
#Deleted in new
chr1	149081964	149082174	ENSG00000269713.7|NBPF9|pc|chr1:149081964:149082174:-	0	-
#Deleted in new
chr1	149081964	149082311	ENSG00000269713.7|NBPF9|pc|chr1:149081964:149082311:-	0	-
#Deleted in new
chr1	149082271	149082311	ENSG00000269713.7|NBPF9|pc|chr1:149082271:149082311:-	0	-
#Deleted in new
chr1	149082276	149082430	ENSG00000269713.7|NBPF9|pc|chr1:149082276:149082430:-	0	-
#Deleted in new
chr1	149092754	149092785	ENSG00000269713.7|NBPF9|pc|chr1:149092754:149092785:-	0	-
#Deleted in new
chr1	149098437	149098706	ENSG00000269713.7|NBPF9|pc|chr1:149098437:149098706:-	0	-
#Deleted in new
chr1	149101261	149101379	ENSG00000269713.7|NBPF9|pc|chr1:149101261:149101379:-	0	-
#Deleted in new
chr11	49162802	49162890	ENSG00000086205.16|FOLH1|pc|chr11:49162802:49162890:-	0	-
#Deleted in new
chr1	149190635	149190795	ENSG00000274265.4|AC245297.3|lncRNA|chr1:149190635:149190795:+	0	+
#Deleted in new
chr1	149250564	149251013	ENSG00000274265.4|AC245297.3|lncRNA|chr1:149250564:149251013:+	0	+
#Split in new
chr11	4942830	4947162	ENSG00000205497.4|OR51A4|pc|chr11:4942830:4947162:-	0	-
#Deleted in new
chr11	4947544	4947605	ENSG00000205497.4|OR51A4|pc|chr11:4947544:4947605:-	0	-
#Deleted in new
chr1	149475640	149476107	ENSG00000271383.6|NBPF19|pc|chr1:149475640:149476107:+	0	+
#Deleted in new
chr1	149475759	149476107	ENSG00000271383.6|NBPF19|pc|chr1:149475759:149476107:+	0	+
#Deleted in new
chr1	149475932	149476107	ENSG00000271383.6|NBPF19|pc|chr1:149475932:149476107:+	0	+
#Deleted in new
chr1	149477944	149478047	ENSG00000271383.6|NBPF19|pc|chr1:149477944:149478047:+	0	+
#Deleted in new
chr1	149477959	149478047	ENSG00000271383.6|NBPF19|pc|chr1:149477959:149478047:+	0	+
#Deleted in new
chr1	149478879	149479094	ENSG00000271383.6|NBPF19|pc|chr1:149478879:149479094:+	0	+
#Deleted in new
chr1	149480141	149480214	ENSG00000271383.6|NBPF19|pc|chr1:149480141:149480214:+	0	+
#Deleted in new
chr1	149480678	149480884	ENSG00000271383.6|NBPF19|pc|chr1:149480678:149480884:+	0	+
#Deleted in new
chr1	149482174	149482226	ENSG00000271383.6|NBPF19|pc|chr1:149482174:149482226:+	0	+
#Deleted in new
chr1	149486129	149486293	ENSG00000271383.6|NBPF19|pc|chr1:149486129:149486293:+	0	+
#Deleted in new
chr1	149487331	149487383	ENSG00000271383.6|NBPF19|pc|chr1:149487331:149487383:+	0	+
#Deleted in new
chr1	149488012	149488185	ENSG00000271383.6|NBPF19|pc|chr1:149488012:149488185:+	0	+
#Deleted in new
chr1	149488904	149488956	ENSG00000271383.6|NBPF19|pc|chr1:149488904:149488956:+	0	+
#Deleted in new
chr1	149489560	149489733	ENSG00000271383.6|NBPF19|pc|chr1:149489560:149489733:+	0	+
#Deleted in new
chr1	149490442	149490494	ENSG00000271383.6|NBPF19|pc|chr1:149490442:149490494:+	0	+
#Deleted in new
chr1	149491138	149491311	ENSG00000271383.6|NBPF19|pc|chr1:149491138:149491311:+	0	+
#Deleted in new
chr1	149492025	149492134	ENSG00000271383.6|NBPF19|pc|chr1:149492025:149492134:+	0	+
#Deleted in new
chr1	149492767	149492940	ENSG00000271383.6|NBPF19|pc|chr1:149492767:149492940:+	0	+
#Deleted in new
chr1	149493659	149493711	ENSG00000271383.6|NBPF19|pc|chr1:149493659:149493711:+	0	+
#Deleted in new
chr1	149494317	149494490	ENSG00000271383.6|NBPF19|pc|chr1:149494317:149494490:+	0	+
#Deleted in new
chr1	149495199	149495251	ENSG00000271383.6|NBPF19|pc|chr1:149495199:149495251:+	0	+
#Deleted in new
chr1	149495901	149496074	ENSG00000271383.6|NBPF19|pc|chr1:149495901:149496074:+	0	+
#Deleted in new
chr1	149496788	149496897	ENSG00000271383.6|NBPF19|pc|chr1:149496788:149496897:+	0	+
#Deleted in new
chr1	149497524	149497697	ENSG00000271383.6|NBPF19|pc|chr1:149497524:149497697:+	0	+
#Deleted in new
chr1	149498416	149498468	ENSG00000271383.6|NBPF19|pc|chr1:149498416:149498468:+	0	+
#Deleted in new
chr1	149499072	149499245	ENSG00000271383.6|NBPF19|pc|chr1:149499072:149499245:+	0	+
#Deleted in new
chr1	149499954	149500006	ENSG00000271383.6|NBPF19|pc|chr1:149499954:149500006:+	0	+
#Deleted in new
chr1	149499965	149500006	ENSG00000271383.6|NBPF19|pc|chr1:149499965:149500006:+	0	+
#Deleted in new
chr1	149500656	149500829	ENSG00000271383.6|NBPF19|pc|chr1:149500656:149500829:+	0	+
#Deleted in new
chr1	149500665	149500833	ENSG00000271383.6|NBPF19|pc|chr1:149500665:149500833:+	0	+
#Deleted in new
chr1	149501543	149501652	ENSG00000271383.6|NBPF19|pc|chr1:149501543:149501652:+	0	+
#Deleted in new
chr1	149501604	149501652	ENSG00000271383.6|NBPF19|pc|chr1:149501604:149501652:+	0	+
#Deleted in new
chr1	149502285	149502458	ENSG00000271383.6|NBPF19|pc|chr1:149502285:149502458:+	0	+
#Deleted in new
chr1	149503177	149503229	ENSG00000271383.6|NBPF19|pc|chr1:149503177:149503229:+	0	+
#Deleted in new
chr1	149503833	149504006	ENSG00000271383.6|NBPF19|pc|chr1:149503833:149504006:+	0	+
#Deleted in new
chr1	149504715	149504767	ENSG00000271383.6|NBPF19|pc|chr1:149504715:149504767:+	0	+
#Deleted in new
chr1	149505417	149505590	ENSG00000271383.6|NBPF19|pc|chr1:149505417:149505590:+	0	+
#Deleted in new
chr1	149506304	149506413	ENSG00000271383.6|NBPF19|pc|chr1:149506304:149506413:+	0	+
#Deleted in new
chr1	149507046	149507219	ENSG00000271383.6|NBPF19|pc|chr1:149507046:149507219:+	0	+
#Deleted in new
chr1	149507938	149507990	ENSG00000271383.6|NBPF19|pc|chr1:149507938:149507990:+	0	+
#Deleted in new
chr1	149508594	149508767	ENSG00000271383.6|NBPF19|pc|chr1:149508594:149508767:+	0	+
#Deleted in new
chr1	149509476	149509528	ENSG00000271383.6|NBPF19|pc|chr1:149509476:149509528:+	0	+
#Deleted in new
chr1	149510178	149510351	ENSG00000271383.6|NBPF19|pc|chr1:149510178:149510351:+	0	+
#Deleted in new
chr1	149511065	149511174	ENSG00000271383.6|NBPF19|pc|chr1:149511065:149511174:+	0	+
#Deleted in new
chr1	149511807	149511980	ENSG00000271383.6|NBPF19|pc|chr1:149511807:149511980:+	0	+
#Deleted in new
chr1	149512699	149512751	ENSG00000271383.6|NBPF19|pc|chr1:149512699:149512751:+	0	+
#Deleted in new
chr1	149513355	149513528	ENSG00000271383.6|NBPF19|pc|chr1:149513355:149513528:+	0	+
#Deleted in new
chr1	149514237	149514289	ENSG00000271383.6|NBPF19|pc|chr1:149514237:149514289:+	0	+
#Deleted in new
chr1	149514935	149515108	ENSG00000271383.6|NBPF19|pc|chr1:149514935:149515108:+	0	+
#Deleted in new
chr1	149515821	149515930	ENSG00000271383.6|NBPF19|pc|chr1:149515821:149515930:+	0	+
#Deleted in new
chr1	149516563	149516736	ENSG00000271383.6|NBPF19|pc|chr1:149516563:149516736:+	0	+
#Deleted in new
chr1	149517455	149517507	ENSG00000271383.6|NBPF19|pc|chr1:149517455:149517507:+	0	+
#Deleted in new
chr1	149518109	149518282	ENSG00000271383.6|NBPF19|pc|chr1:149518109:149518282:+	0	+
#Deleted in new
chr1	149518991	149519043	ENSG00000271383.6|NBPF19|pc|chr1:149518991:149519043:+	0	+
#Deleted in new
chr1	149519687	149519860	ENSG00000271383.6|NBPF19|pc|chr1:149519687:149519860:+	0	+
#Deleted in new
chr1	149520574	149520683	ENSG00000271383.6|NBPF19|pc|chr1:149520574:149520683:+	0	+
#Deleted in new
chr1	149521318	149521491	ENSG00000271383.6|NBPF19|pc|chr1:149521318:149521491:+	0	+
#Deleted in new
chr1	149522210	149522262	ENSG00000271383.6|NBPF19|pc|chr1:149522210:149522262:+	0	+
#Deleted in new
chr1	149522864	149523037	ENSG00000271383.6|NBPF19|pc|chr1:149522864:149523037:+	0	+
#Deleted in new
chr1	149523746	149523798	ENSG00000271383.6|NBPF19|pc|chr1:149523746:149523798:+	0	+
#Deleted in new
chr1	149524444	149524617	ENSG00000271383.6|NBPF19|pc|chr1:149524444:149524617:+	0	+
#Deleted in new
chr1	149525331	149525440	ENSG00000271383.6|NBPF19|pc|chr1:149525331:149525440:+	0	+
#Deleted in new
chr1	149526069	149526242	ENSG00000271383.6|NBPF19|pc|chr1:149526069:149526242:+	0	+
#Deleted in new
chr1	149526961	149527013	ENSG00000271383.6|NBPF19|pc|chr1:149526961:149527013:+	0	+
#Deleted in new
chr1	149527613	149527786	ENSG00000271383.6|NBPF19|pc|chr1:149527613:149527786:+	0	+
#Deleted in new
chr1	149528495	149528547	ENSG00000271383.6|NBPF19|pc|chr1:149528495:149528547:+	0	+
#Deleted in new
chr1	149529173	149529346	ENSG00000271383.6|NBPF19|pc|chr1:149529173:149529346:+	0	+
#Deleted in new
chr1	149530060	149530169	ENSG00000271383.6|NBPF19|pc|chr1:149530060:149530169:+	0	+
#Deleted in new
chr1	149530798	149530971	ENSG00000271383.6|NBPF19|pc|chr1:149530798:149530971:+	0	+
#Deleted in new
chr1	149531690	149531742	ENSG00000271383.6|NBPF19|pc|chr1:149531690:149531742:+	0	+
#Deleted in new
chr1	149532344	149532517	ENSG00000271383.6|NBPF19|pc|chr1:149532344:149532517:+	0	+
#Deleted in new
chr1	149533226	149533278	ENSG00000271383.6|NBPF19|pc|chr1:149533226:149533278:+	0	+
#Deleted in new
chr1	149533924	149534097	ENSG00000271383.6|NBPF19|pc|chr1:149533924:149534097:+	0	+
#Deleted in new
chr1	149534811	149534920	ENSG00000271383.6|NBPF19|pc|chr1:149534811:149534920:+	0	+
#Deleted in new
chr1	149535553	149535726	ENSG00000271383.6|NBPF19|pc|chr1:149535553:149535726:+	0	+
#Deleted in new
chr1	149536445	149536497	ENSG00000271383.6|NBPF19|pc|chr1:149536445:149536497:+	0	+
#Deleted in new
chr1	149537099	149537272	ENSG00000271383.6|NBPF19|pc|chr1:149537099:149537272:+	0	+
#Deleted in new
chr1	149537981	149538033	ENSG00000271383.6|NBPF19|pc|chr1:149537981:149538033:+	0	+
#Deleted in new
chr1	149538675	149538848	ENSG00000271383.6|NBPF19|pc|chr1:149538675:149538848:+	0	+
#Deleted in new
chr1	149539562	149539671	ENSG00000271383.6|NBPF19|pc|chr1:149539562:149539671:+	0	+
#Deleted in new
chr1	149540300	149540473	ENSG00000271383.6|NBPF19|pc|chr1:149540300:149540473:+	0	+
#Deleted in new
chr1	149541192	149541244	ENSG00000271383.6|NBPF19|pc|chr1:149541192:149541244:+	0	+
#Deleted in new
chr1	149541852	149542025	ENSG00000271383.6|NBPF19|pc|chr1:149541852:149542025:+	0	+
#Deleted in new
chr1	149542734	149542786	ENSG00000271383.6|NBPF19|pc|chr1:149542734:149542786:+	0	+
#Deleted in new
chr1	149543412	149543585	ENSG00000271383.6|NBPF19|pc|chr1:149543412:149543585:+	0	+
#Deleted in new
chr1	149544299	149544408	ENSG00000271383.6|NBPF19|pc|chr1:149544299:149544408:+	0	+
#Deleted in new
chr1	149545037	149545210	ENSG00000271383.6|NBPF19|pc|chr1:149545037:149545210:+	0	+
#Deleted in new
chr1	149545929	149545981	ENSG00000271383.6|NBPF19|pc|chr1:149545929:149545981:+	0	+
#Deleted in new
chr1	149546589	149546762	ENSG00000271383.6|NBPF19|pc|chr1:149546589:149546762:+	0	+
#Deleted in new
chr1	149547471	149547523	ENSG00000271383.6|NBPF19|pc|chr1:149547471:149547523:+	0	+
#Deleted in new
chr1	149548149	149548322	ENSG00000271383.6|NBPF19|pc|chr1:149548149:149548322:+	0	+
#Duplicated in new
chr1	1495484	1496201	ENSG00000160072.19|ATAD3B|pc|chr1:1495484:1496201:+	0	+
#Duplicated in new
chr1	1495484	1496202	ENSG00000160072.19|ATAD3B|pc|chr1:1495484:1496202:+	0	+
#Split in new
chr1	1495484	1497848	ENSG00000160072.19|ATAD3B|pc|chr1:1495484:1497848:+	0	+
#Deleted in new
chr1	149549036	149549145	ENSG00000271383.6|NBPF19|pc|chr1:149549036:149549145:+	0	+
#Deleted in new
chr1	149549774	149549947	ENSG00000271383.6|NBPF19|pc|chr1:149549774:149549947:+	0	+
#Deleted in new
chr1	149550666	149550718	ENSG00000271383.6|NBPF19|pc|chr1:149550666:149550718:+	0	+
#Deleted in new
chr1	149551326	149551499	ENSG00000271383.6|NBPF19|pc|chr1:149551326:149551499:+	0	+
#Deleted in new
chr1	149552208	149552260	ENSG00000271383.6|NBPF19|pc|chr1:149552208:149552260:+	0	+
#Deleted in new
chr1	149552886	149553059	ENSG00000271383.6|NBPF19|pc|chr1:149552886:149553059:+	0	+
#Deleted in new
chr1	149553773	149553882	ENSG00000271383.6|NBPF19|pc|chr1:149553773:149553882:+	0	+
#Deleted in new
chr1	149554494	149554764	ENSG00000271383.6|NBPF19|pc|chr1:149554494:149554764:+	0	+
#Deleted in new
chr1	149554494	149555625	ENSG00000271383.6|NBPF19|pc|chr1:149554494:149555625:+	0	+
#Deleted in new
chr1	149554494	149555644	ENSG00000271383.6|NBPF19|pc|chr1:149554494:149555644:+	0	+
#Deleted in new
chr1	149554494	149556361	ENSG00000271383.6|NBPF19|pc|chr1:149554494:149556361:+	0	+
#Deleted in new
chr1	149636488	149636716	ENSG00000277147.4|LINC00869|lncRNA|chr1:149636488:149636716:+	0	+
#Deleted in new
chr1	149636543	149636716	ENSG00000277147.4|LINC00869|lncRNA|chr1:149636543:149636716:+	0	+
#Deleted in new
chr1	149636649	149636716	ENSG00000277147.4|LINC00869|lncRNA|chr1:149636649:149636716:+	0	+
#Deleted in new
chr1	149646598	149646654	ENSG00000277147.4|LINC00869|lncRNA|chr1:149646598:149646654:+	0	+
#Deleted in new
chr1	149646598	149646737	ENSG00000277147.4|LINC00869|lncRNA|chr1:149646598:149646737:+	0	+
#Deleted in new
chr1	149646598	149646809	ENSG00000277147.4|LINC00869|lncRNA|chr1:149646598:149646809:+	0	+
#Deleted in new
chr1	149646598	149646945	ENSG00000277147.4|LINC00869|lncRNA|chr1:149646598:149646945:+	0	+
#Deleted in new
chr1	149646598	149647064	ENSG00000277147.4|LINC00869|lncRNA|chr1:149646598:149647064:+	0	+
#Deleted in new
chr1	149646598	149647610	ENSG00000277147.4|LINC00869|lncRNA|chr1:149646598:149647610:+	0	+
#Deleted in new
chr1	149646749	149647064	ENSG00000277147.4|LINC00869|lncRNA|chr1:149646749:149647064:+	0	+
#Deleted in new
chr1	149647380	149647619	ENSG00000277147.4|LINC00869|lncRNA|chr1:149647380:149647619:+	0	+
#Deleted in new
chr1	149647380	149647624	ENSG00000277147.4|LINC00869|lncRNA|chr1:149647380:149647624:+	0	+
#Deleted in new
chr1	149647380	149648388	ENSG00000277147.4|LINC00869|lncRNA|chr1:149647380:149648388:+	0	+
#Deleted in new
chr1	149661301	149661419	ENSG00000277147.4|LINC00869|lncRNA|chr1:149661301:149661419:+	0	+
#Deleted in new
chr1	149661301	149661606	ENSG00000277147.4|LINC00869|lncRNA|chr1:149661301:149661606:+	0	+
#Deleted in new
chr1	149664520	149664646	ENSG00000277147.4|LINC00869|lncRNA|chr1:149664520:149664646:+	0	+
#Deleted in new
chr1	149672578	149672793	ENSG00000277147.4|LINC00869|lncRNA|chr1:149672578:149672793:+	0	+
#Partially deleted in new
chr1	149785658	149788138	ENSG00000233030.2|AC243772.2|lncRNA|chr1:149785658:149788138:-	0	-
#Deleted in new
chr1	149803601	149803961	ENSG00000203814.6|HIST2H2BF|pc|chr1:149803601:149803961:-	0	-
#Deleted in new
chr1	149805259	149805555	ENSG00000203814.6|HIST2H2BF|pc|chr1:149805259:149805555:-	0	-
#Partially deleted in new
chr1	149810405	149812359	ENSG00000203814.6|HIST2H2BF|pc|chr1:149810405:149812359:-	0	-
#Deleted in new
chr1	149811682	149811757	ENSG00000203814.6|HIST2H2BF|pc|chr1:149811682:149811757:-	0	-
#Partially deleted in new
chr1	149834134	149834484	ENSG00000270882.2|HIST2H4A|pc|chr1:149834134:149834484:+	0	+
#Deleted in new
chr1	149839594	149839767	ENSG00000270882.2|HIST2H4A|pc|chr1:149839594:149839767:+	0	+
#Deleted in new
chr1	149844497	149849024	ENSG00000261716.1|AC239868.2|lncRNA|chr1:149844497:149849024:-	0	-
#Deleted in new
chr1	149845815	149846486	ENSG00000272993.1|AC239868.4|lncRNA|chr1:149845815:149846486:+	0	+
#Deleted in new
chr1	149854044	149854217	ENSG00000270276.2|HIST2H4B|pc|chr1:149854044:149854217:-	0	-
#Deleted in new
chr1	149859184	149859681	ENSG00000270276.2|HIST2H4B|pc|chr1:149859184:149859681:-	0	-
#Deleted in new
chr11	4988067	4988310	ENSG00000167346.7|MMP26|pc|chr11:4988067:4988310:+	0	+
#Deleted in new
chr11	4988193	4988310	ENSG00000167346.7|MMP26|pc|chr11:4988193:4988310:+	0	+
#Deleted in new
chr11	4988269	4988310	ENSG00000167346.7|MMP26|pc|chr11:4988269:4988310:+	0	+
#Partially deleted in new
chr11	4989647	4989830	ENSG00000167346.7|MMP26|pc|chr11:4989647:4989830:+	0	+
#Deleted in new
chr11	4990597	4990746	ENSG00000167346.7|MMP26|pc|chr11:4990597:4990746:+	0	+
#Deleted in new
chr11	4992213	4992427	ENSG00000167346.7|MMP26|pc|chr11:4992213:4992427:+	0	+
#Deleted in new
chr11	4992213	4992429	ENSG00000167346.7|MMP26|pc|chr11:4992213:4992429:+	0	+
#Partially deleted in new
chr11	4998823	5005536	ENSG00000176798.2|OR51L1|pc|chr11:4998823:5005536:+	0	+
#Deleted in new
chr11	5002570	5003800	ENSG00000176798.2|OR51L1|pc|chr11:5002570:5003800:+	0	+
#Deleted in new
chr11	5002570	5005536	ENSG00000176798.2|OR51L1|pc|chr11:5002570:5005536:+	0	+
#Deleted in new
chr11	5005229	5005536	ENSG00000176798.2|OR51L1|pc|chr11:5005229:5005536:+	0	+
#Partially deleted in new
chr1	150067347	150067606	ENSG00000136631.12|VPS45|pc|chr1:150067347:150067606:+	0	+
#Partially deleted in new
chr1	150067368	150067606	ENSG00000136631.12|VPS45|pc|chr1:150067368:150067606:+	0	+
#Partially deleted in new
chr1	150067381	150067606	ENSG00000136631.12|VPS45|pc|chr1:150067381:150067606:+	0	+
#Deleted in new
chr1	150142837	150142931	ENSG00000136631.12|VPS45|pc|chr1:150142837:150142931:+	0	+
#Deleted in new
chr1	150149182	150149786	ENSG00000023902.13|PLEKHO1|pc|chr1:150149182:150149786:+	0	+
#Deleted in new
chr1	150149979	150150287	ENSG00000023902.13|PLEKHO1|pc|chr1:150149979:150150287:+	0	+
#Deleted in new
chr1	150164436	150164720	ENSG00000023902.13|PLEKHO1|pc|chr1:150164436:150164720:+	0	+
#Deleted in new
chr1	150223185	150223240	ENSG00000143401.14|ANP32E|pc|chr1:150223185:150223240:-	0	-
#Deleted in new
chr1	150223185	150223294	ENSG00000143401.14|ANP32E|pc|chr1:150223185:150223294:-	0	-
#Partially deleted in new
chr1	150272283	150272413	ENSG00000118292.8|C1orf54|pc|chr1:150272283:150272413:+	0	+
#Deleted in new
chr11	50298578	50298917	ENSG00000254518.1|AC109635.2|lncRNA|chr11:50298578:50298917:+	0	+
#Deleted in new
chr11	50298617	50298917	ENSG00000254518.1|AC109635.2|lncRNA|chr11:50298617:50298917:+	0	+
#Deleted in new
chr11	50301943	50302128	ENSG00000254518.1|AC109635.2|lncRNA|chr11:50301943:50302128:+	0	+
#Deleted in new
chr11	50303138	50303262	ENSG00000254518.1|AC109635.2|lncRNA|chr11:50303138:50303262:+	0	+
#Deleted in new
chr11	50304580	50304656	ENSG00000254518.1|AC109635.2|lncRNA|chr11:50304580:50304656:+	0	+
#Deleted in new
chr1	150329751	150330498	ENSG00000117360.12|PRPF3|pc|chr1:150329751:150330498:+	0	+
#Partially deleted in new
chr1	150348683	150349218	ENSG00000117360.12|PRPF3|pc|chr1:150348683:150349218:+	0	+
#Deleted in new
chr1	150363090	150363398	ENSG00000163125.15|RPRD2|pc|chr1:150363090:150363398:+	0	+
#Deleted in new
chr1	150408905	150409052	ENSG00000163125.15|RPRD2|pc|chr1:150408905:150409052:+	0	+
#Deleted in new
chr11	504426	504552	ENSG00000023191.16|RNH1|pc|chr11:504426:504552:-	0	-
#Partially deleted in new
chr11	504823	505881	ENSG00000023191.16|RNH1|pc|chr11:504823:505881:-	0	-
#Deleted in new
chr1	150517772	150518032	ENSG00000228126.1|FALEC|lncRNA|chr1:150517772:150518032:+	0	+
#Deleted in new
chr11	505377	505461	ENSG00000023191.16|RNH1|pc|chr11:505377:505461:-	0	-
#Deleted in new
chr1	150600850	150601279	ENSG00000143420.18|ENSA|pc|chr1:150600850:150601279:-	0	-
#Deleted in new
chr11	507112	507195	ENSG00000023191.16|RNH1|pc|chr11:507112:507195:-	0	-
#Deleted in new
chr11	507112	507212	ENSG00000023191.16|RNH1|pc|chr11:507112:507212:-	0	-
#Deleted in new
chr11	507112	507218	ENSG00000023191.16|RNH1|pc|chr11:507112:507218:-	0	-
#Deleted in new
chr11	507112	507221	ENSG00000023191.16|RNH1|pc|chr11:507112:507221:-	0	-
#Deleted in new
chr11	507112	507227	ENSG00000023191.16|RNH1|pc|chr11:507112:507227:-	0	-
#Deleted in new
chr11	507112	507253	ENSG00000023191.16|RNH1|pc|chr11:507112:507253:-	0	-
#Deleted in new
chr11	507112	507257	ENSG00000023191.16|RNH1|pc|chr11:507112:507257:-	0	-
#Deleted in new
chr11	507112	507259	ENSG00000023191.16|RNH1|pc|chr11:507112:507259:-	0	-
#Deleted in new
chr11	507112	507264	ENSG00000023191.16|RNH1|pc|chr11:507112:507264:-	0	-
#Deleted in new
chr11	507112	507300	ENSG00000023191.16|RNH1|pc|chr11:507112:507300:-	0	-
#Partially deleted in new
chr1	150730195	150733145	ENSG00000163131.10|CTSS|pc|chr1:150730195:150733145:-	0	-
#Deleted in new
chr1	150730881	150731134	ENSG00000163131.10|CTSS|pc|chr1:150730881:150731134:-	0	-
#Deleted in new
chr1	150730885	150731120	ENSG00000163131.10|CTSS|pc|chr1:150730885:150731120:-	0	-
#Deleted in new
chr1	150748164	150748285	ENSG00000163131.10|CTSS|pc|chr1:150748164:150748285:-	0	-
#Deleted in new
chr1	150861246	150861302	ENSG00000143437.20|ARNT|pc|chr1:150861246:150861302:-	0	-
#Deleted in new
chr1	150973122	150973169	ENSG00000231073.1|AL590133.1|lncRNA|chr1:150973122:150973169:+	0	+
#Partially deleted in new
chr1	150975312	150975534	ENSG00000231073.1|AL590133.1|lncRNA|chr1:150975312:150975534:+	0	+
#Partially deleted in new
chr1	150996085	150996287	ENSG00000143409.15|MINDY1|pc|chr1:150996085:150996287:-	0	-
#Deleted in new
chr1	151044879	151045033	ENSG00000163141.18|BNIPL|pc|chr1:151044879:151045033:+	0	+
#Deleted in new
chr1	151049580	151049713	ENSG00000143443.9|C1orf56|pc|chr1:151049580:151049713:+	0	+
#Deleted in new
chr11	5106061	5106837	ENSG00000236897.1|AC113331.1|lncRNA|chr11:5106061:5106837:-	0	-
#Deleted in new
chr1	151073038	151073157	ENSG00000143458.11|GABPB2|pc|chr1:151073038:151073157:+	0	+
#Deleted in new
chr11	5107437	5107530	ENSG00000236897.1|AC113331.1|lncRNA|chr11:5107437:5107530:-	0	-
#Deleted in new
chr1	15120576	15120697	ENSG00000175147.11|TMEM51-AS1|lncRNA|chr1:15120576:15120697:-	0	-
#Deleted in new
chr1	15120971	15121059	ENSG00000175147.11|TMEM51-AS1|lncRNA|chr1:15120971:15121059:-	0	-
#Deleted in new
chr1	151213516	151213547	ENSG00000143398.19|PIP5K1A|pc|chr1:151213516:151213547:+	0	+
#Deleted in new
chr1	151224370	151224406	ENSG00000143398.19|PIP5K1A|pc|chr1:151224370:151224406:+	0	+
#Deleted in new
chr1	151233328	151233398	ENSG00000143398.19|PIP5K1A|pc|chr1:151233328:151233398:+	0	+
#Deleted in new
chr1	151233621	151233784	ENSG00000143398.19|PIP5K1A|pc|chr1:151233621:151233784:+	0	+
#Deleted in new
chr1	15124227	15124373	ENSG00000175147.11|TMEM51-AS1|lncRNA|chr1:15124227:15124373:-	0	-
#Deleted in new
chr1	151259062	151259221	ENSG00000159352.15|PSMD4|pc|chr1:151259062:151259221:+	0	+
#Deleted in new
chr1	151262559	151262604	ENSG00000159352.15|PSMD4|pc|chr1:151262559:151262604:+	0	+
#Deleted in new
chr1	151280023	151280258	ENSG00000232671.5|AL391069.2|lncRNA|chr1:151280023:151280258:-	0	-
#Partially deleted in new
chr1	151285205	151286074	ENSG00000143373.17|ZNF687|pc|chr1:151285205:151286074:+	0	+
#Deleted in new
chr1	151347631	151348027	ENSG00000237976.1|AL391069.3|lncRNA|chr1:151347631:151348027:+	0	+
#Partially deleted in new
chr1	151370200	151370285	ENSG00000143416.20|SELENBP1|pc|chr1:151370200:151370285:-	0	-
#Deleted in new
chr11	5138185	5138251	ENSG00000171944.2|OR52A5|pc|chr11:5138185:5138251:-	0	-
#Split in new
chr11	5143218	5152690	ENSG00000182070.5|OR52A1|pc|chr11:5143218:5152690:-	0	-
#Deleted in new
chr1	151450909	151451047	ENSG00000143442.21|POGZ|pc|chr1:151450909:151451047:-	0	-
#Deleted in new
chr1	151454961	151455057	ENSG00000143442.21|POGZ|pc|chr1:151454961:151455057:-	0	-
#Deleted in new
chr1	151454961	151455197	ENSG00000143442.21|POGZ|pc|chr1:151454961:151455197:-	0	-
#Deleted in new
chr1	151515494	151515616	ENSG00000143375.14|CGN|pc|chr1:151515494:151515616:+	0	+
#Deleted in new
chr11	5154446	5154757	ENSG00000182070.5|OR52A1|pc|chr11:5154446:5154757:-	0	-
#Deleted in new
chr1	15164343	15164461	ENSG00000204464.7|C1orf195|lncRNA|chr1:15164343:15164461:-	0	-
#Deleted in new
chr1	151669140	151669361	ENSG00000143376.12|SNX27|pc|chr1:151669140:151669361:+	0	+
#Deleted in new
chr1	151701025	151701138	ENSG00000227045.1|AL589765.1|lncRNA|chr1:151701025:151701138:+	0	+
#Deleted in new
chr1	15171180	15171317	ENSG00000204464.7|C1orf195|lncRNA|chr1:15171180:15171317:-	0	-
#Duplicated in new
chr1	1517166	1517412	ENSG00000197785.13|ATAD3A|pc|chr1:1517166:1517412:+	0	+
#Deleted in new
chr1	151719595	151719688	ENSG00000178796.12|RIIAD1|pc|chr1:151719595:151719688:+	0	+
#Deleted in new
chr1	151755540	151755826	ENSG00000269621.1|AL589765.7|lncRNA|chr1:151755540:151755826:+	0	+
#Duplicated in new
chr1	1517620	1517775	ENSG00000197785.13|ATAD3A|pc|chr1:1517620:1517775:+	0	+
#Deleted in new
chr1	151765708	151765750	ENSG00000232937.1|AL589765.2|lncRNA|chr1:151765708:151765750:+	0	+
#Deleted in new
chr1	151769343	151769501	ENSG00000249602.1|AL589765.4|lncRNA|chr1:151769343:151769501:-	0	-
#Partially deleted in new
chr1	151798053	151798602	ENSG00000269489.1|AL589765.6|lncRNA|chr1:151798053:151798602:+	0	+
#Deleted in new
chr1	151844044	151844242	ENSG00000234614.1|AL450992.2|lncRNA|chr1:151844044:151844242:+	0	+
#Deleted in new
chr1	151850232	151850385	ENSG00000234614.1|AL450992.2|lncRNA|chr1:151850232:151850385:+	0	+
#Deleted in new
chr1	151889982	151890214	ENSG00000159445.12|THEM4|pc|chr1:151889982:151890214:-	0	-
#Partially deleted in new
chr1	151889982	151891440	ENSG00000159445.12|THEM4|pc|chr1:151889982:151891440:-	0	-
#Partially deleted in new
chr1	151994530	151994606	ENSG00000229021.2|AL450992.1|lncRNA|chr1:151994530:151994606:+	0	+
#Deleted in new
chr1	152010872	152010982	ENSG00000229021.2|AL450992.1|lncRNA|chr1:152010872:152010982:+	0	+
#Deleted in new
chr1	152015674	152015732	ENSG00000229021.2|AL450992.1|lncRNA|chr1:152015674:152015732:+	0	+
#Deleted in new
chr1	152016005	152016075	ENSG00000229021.2|AL450992.1|lncRNA|chr1:152016005:152016075:+	0	+
#Deleted in new
chr1	152016899	152018528	ENSG00000229021.2|AL450992.1|lncRNA|chr1:152016899:152018528:+	0	+
#Deleted in new
chr1	152018626	152018837	ENSG00000229021.2|AL450992.1|lncRNA|chr1:152018626:152018837:+	0	+
#Deleted in new
chr1	152020236	152020339	ENSG00000229021.2|AL450992.1|lncRNA|chr1:152020236:152020339:+	0	+
#Deleted in new
chr1	152021601	152021752	ENSG00000229021.2|AL450992.1|lncRNA|chr1:152021601:152021752:+	0	+
#Deleted in new
chr1	152022436	152022509	ENSG00000229021.2|AL450992.1|lncRNA|chr1:152022436:152022509:+	0	+
#Deleted in new
chr11	5205040	5205087	ENSG00000224091.1|AC104389.1|lncRNA|chr11:5205040:5205087:+	0	+
#Deleted in new
chr11	5206833	5207308	ENSG00000224091.1|AC104389.1|lncRNA|chr11:5206833:5207308:+	0	+
#Deleted in new
chr1	15210489	15210562	ENSG00000171729.13|TMEM51|pc|chr1:15210489:15210562:+	0	+
#Deleted in new
chr1	152248894	152249012	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152248894:152249012:+	0	+
#Deleted in new
chr1	152249002	152249012	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152249002:152249012:+	0	+
#Deleted in new
chr1	152251652	152251758	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152251652:152251758:+	0	+
#Deleted in new
chr1	152269416	152271094	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152269416:152271094:+	0	+
#Deleted in new
chr11	5229251	5229395	ENSG00000244734.3|HBB|pc|chr11:5229251:5229395:-	0	-
#Deleted in new
chr1	152301753	152301833	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152301753:152301833:+	0	+
#Deleted in new
chr11	5232677	5232798	ENSG00000223609.7|HBD|pc|chr11:5232677:5232798:-	0	-
#Deleted in new
chr1	152335338	152335439	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152335338:152335439:+	0	+
#Deleted in new
chr1	152335378	152335439	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152335378:152335439:+	0	+
#Deleted in new
chr1	152337067	152337094	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152337067:152337094:+	0	+
#Deleted in new
chr1	152337988	152338089	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152337988:152338089:+	0	+
#Deleted in new
chr1	152341086	152341110	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152341086:152341110:+	0	+
#Deleted in new
chr1	152341086	152341210	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152341086:152341210:+	0	+
#Duplicated in new
chr11	5234341	5234648	ENSG00000223609.7|HBD|pc|chr11:5234341:5234648:-	0	-
#Deleted in new
chr11	5235214	5235370	ENSG00000223609.7|HBD|pc|chr11:5235214:5235370:-	0	-
#Deleted in new
chr1	152373953	152374047	ENSG00000237975.6|FLG-AS1|lncRNA|chr1:152373953:152374047:+	0	+
#Deleted in new
chr11	5244553	5245547	ENSG00000260629.1|BGLT3|lncRNA|chr11:5244553:5245547:-	0	-
#Deleted in new
chr1	152655476	152655547	ENSG00000176075.7|LINC00302|lncRNA|chr1:152655476:152655547:+	0	+
#Deleted in new
chr1	152656599	152656804	ENSG00000176075.7|LINC00302|lncRNA|chr1:152656599:152656804:+	0	+
#Deleted in new
chr1	152663395	152663429	ENSG00000187223.3|LCE2D|pc|chr1:152663395:152663429:+	0	+
#Deleted in new
chr1	152675294	152675328	ENSG00000187180.3|LCE2C|pc|chr1:152675294:152675328:+	0	+
#Duplicated in new
chr1	152675994	152676574	ENSG00000187180.3|LCE2C|pc|chr1:152675994:152676574:+	0	+
#Deleted in new
chr1	152686122	152686156	ENSG00000159455.8|LCE2B|pc|chr1:152686122:152686156:+	0	+
#Deleted in new
chr1	152698363	152698394	ENSG00000187173.3|LCE2A|pc|chr1:152698363:152698394:+	0	+
#Deleted in new
chr1	152708159	152708394	ENSG00000187170.4|LCE4A|pc|chr1:152708159:152708394:+	0	+
#Deleted in new
chr1	1527160	1527238	ENSG00000197785.13|ATAD3A|pc|chr1:1527160:1527238:+	0	+
#Deleted in new
chr1	15287044	15287157	ENSG00000142621.19|FHAD1|pc|chr1:15287044:15287157:+	0	+
#Deleted in new
chr11	528906	528947	ENSG00000254739.1|AC137894.1|lncRNA|chr11:528906:528947:+	0	+
#Deleted in new
chr11	529153	529659	ENSG00000254739.1|AC137894.1|lncRNA|chr11:529153:529659:+	0	+
#Deleted in new
chr1	152930039	152931811	ENSG00000224308.1|LINC01527|lncRNA|chr1:152930039:152931811:-	0	-
#Deleted in new
chr1	153001746	153001793	ENSG00000163209.14|SPRR3|pc|chr1:153001746:153001793:+	0	+
#Deleted in new
chr1	153001748	153001793	ENSG00000163209.14|SPRR3|pc|chr1:153001748:153001793:+	0	+
#Deleted in new
chr1	153001750	153001793	ENSG00000163209.14|SPRR3|pc|chr1:153001750:153001793:+	0	+
#Deleted in new
chr1	153001770	153001793	ENSG00000163209.14|SPRR3|pc|chr1:153001770:153001793:+	0	+
#Deleted in new
chr1	153001945	153002400	ENSG00000163209.14|SPRR3|pc|chr1:153001945:153002400:+	0	+
#Duplicated in new
chr1	153003001	153003855	ENSG00000163209.14|SPRR3|pc|chr1:153003001:153003855:+	0	+
#Duplicated in new
chr1	153003001	153003856	ENSG00000163209.14|SPRR3|pc|chr1:153003001:153003856:+	0	+
#Deleted in new
chr1	15305760	15305819	ENSG00000142621.19|FHAD1|pc|chr1:15305760:15305819:+	0	+
#Deleted in new
chr1	15305761	15305819	ENSG00000142621.19|FHAD1|pc|chr1:15305761:15305819:+	0	+
#Deleted in new
chr1	15305768	15305819	ENSG00000142621.19|FHAD1|pc|chr1:15305768:15305819:+	0	+
#Deleted in new
chr1	15305779	15305819	ENSG00000142621.19|FHAD1|pc|chr1:15305779:15305819:+	0	+
#Deleted in new
chr1	153106128	153106184	ENSG00000203785.8|SPRR2E|pc|chr1:153106128:153106184:-	0	-
#Deleted in new
chr1	15312104	15312187	ENSG00000142621.19|FHAD1|pc|chr1:15312104:15312187:+	0	+
#Deleted in new
chr1	15314441	15314598	ENSG00000142621.19|FHAD1|pc|chr1:15314441:15314598:+	0	+
#Deleted in new
chr1	15315046	15315239	ENSG00000142621.19|FHAD1|pc|chr1:15315046:15315239:+	0	+
#Deleted in new
chr1	153176112	153176640	ENSG00000229699.1|AL161636.1|lncRNA|chr1:153176112:153176640:+	0	+
#Partially deleted in new
chr1	15334165	15334699	ENSG00000236045.1|AL031283.3|lncRNA|chr1:15334165:15334699:-	0	-
#Deleted in new
chr1	153373705	153373967	ENSG00000163221.8|S100A12|pc|chr1:153373705:153373967:-	0	-
#Deleted in new
chr1	153374454	153374612	ENSG00000163221.8|S100A12|pc|chr1:153374454:153374612:-	0	-
#Deleted in new
chr11	5340537	5341362	ENSG00000167355.7|AC087380.1|lncRNA|chr11:5340537:5341362:-	0	-
#Deleted in new
chr11	5341166	5341362	ENSG00000167355.7|AC087380.1|lncRNA|chr11:5341166:5341362:-	0	-
#Deleted in new
chr1	153417222	153417278	ENSG00000184330.11|S100A7A|pc|chr1:153417222:153417278:+	0	+
#Deleted in new
chr1	153419144	153419355	ENSG00000184330.11|S100A7A|pc|chr1:153419144:153419355:+	0	+
#Deleted in new
chr1	153419144	153419370	ENSG00000184330.11|S100A7A|pc|chr1:153419144:153419370:+	0	+
#Partially deleted in new
chr1	153419144	153423225	ENSG00000184330.11|S100A7A|pc|chr1:153419144:153423225:+	0	+
#Deleted in new
chr1	153437057	153437222	ENSG00000197364.6|S100A7L2|pc|chr1:153437057:153437222:-	0	-
#Deleted in new
chr11	5345772	5345899	ENSG00000167355.7|AC087380.1|lncRNA|chr11:5345772:5345899:-	0	-
#Deleted in new
chr11	5345772	5345899	ENSG00000196565.13|HBG2|pc|chr11:5345772:5345899:-	0	-
#Deleted in new
chr1	153457743	153457970	ENSG00000143556.8|S100A7|pc|chr1:153457743:153457970:-	0	-
#Deleted in new
chr1	153459817	153459874	ENSG00000143556.8|S100A7|pc|chr1:153459817:153459874:-	0	-
#Deleted in new
chr11	5346261	5346353	ENSG00000167355.7|AC087380.1|lncRNA|chr11:5346261:5346353:-	0	-
#Deleted in new
chr11	5346875	5346910	ENSG00000167355.7|AC087380.1|lncRNA|chr11:5346875:5346910:-	0	-
#Deleted in new
chr1	153631010	153631078	ENSG00000271853.5|AL162258.1|lncRNA|chr1:153631010:153631078:-	0	-
#Deleted in new
chr1	153631010	153631111	ENSG00000271853.5|AL162258.1|lncRNA|chr1:153631010:153631111:-	0	-
#Deleted in new
chr1	153631010	153631360	ENSG00000189171.14|S100A13|pc|chr1:153631010:153631360:-	0	-
#Deleted in new
chr1	153633035	153633157	ENSG00000272030.1|AL162258.2|lncRNA|chr1:153633035:153633157:-	0	-
#Deleted in new
chr1	15363740	15364317	ENSG00000142621.19|FHAD1|pc|chr1:15363740:15364317:+	0	+
#Deleted in new
chr11	536852	537287	ENSG00000174775.16|HRAS|pc|chr11:536852:537287:-	0	-
#Deleted in new
chr1	153753700	153753818	ENSG00000143624.13|INTS3|pc|chr1:153753700:153753818:+	0	+
#Deleted in new
chr1	153789029	153789782	ENSG00000143614.9|GATAD2B|pc|chr1:153789029:153789782:-	0	-
#Deleted in new
chr1	153789937	153790076	ENSG00000143614.9|GATAD2B|pc|chr1:153789937:153790076:-	0	-
#Deleted in new
chr1	15383155	15383402	ENSG00000142621.19|FHAD1|pc|chr1:15383155:15383402:+	0	+
#Deleted in new
chr1	15383158	15383280	ENSG00000142621.19|FHAD1|pc|chr1:15383158:15383280:+	0	+
#Deleted in new
chr1	15383376	15383402	ENSG00000142621.19|FHAD1|pc|chr1:15383376:15383402:+	0	+
#Deleted in new
chr11	538597	538860	ENSG00000161328.10|LRRC56|pc|chr11:538597:538860:+	0	+
#Deleted in new
chr1	153886423	153886521	ENSG00000143614.9|GATAD2B|pc|chr1:153886423:153886521:-	0	-
#Deleted in new
chr1	153898855	153898951	ENSG00000143614.9|GATAD2B|pc|chr1:153898855:153898951:-	0	-
#Deleted in new
chr1	153898916	153898982	ENSG00000143614.9|GATAD2B|pc|chr1:153898916:153898982:-	0	-
#Deleted in new
chr1	153914673	153914740	ENSG00000143614.9|GATAD2B|pc|chr1:153914673:153914740:-	0	-
#Partially deleted in new
chr11	5391596	5393263	ENSG00000184698.5|OR51M1|pc|chr11:5391596:5393263:+	0	+
#Deleted in new
chr1	153928634	153928770	ENSG00000284738.1|AL358472.5|lncRNA|chr1:153928634:153928770:+	0	+
#Deleted in new
chr1	15393099	15393217	ENSG00000142621.19|FHAD1|pc|chr1:15393099:15393217:+	0	+
#Partially deleted in new
chr11	539579	539726	ENSG00000161328.10|LRRC56|pc|chr11:539579:539726:+	0	+
#Deleted in new
chr1	153964360	153965070	ENSG00000282386.1|AL358472.4|lncRNA|chr1:153964360:153965070:+	0	+
#Deleted in new
chr1	153967385	153967712	ENSG00000143570.17|SLC39A1|pc|chr1:153967385:153967712:-	0	-
#Deleted in new
chr1	153967450	153967621	ENSG00000143570.17|SLC39A1|pc|chr1:153967450:153967621:-	0	-
#Deleted in new
chr1	153969635	153969753	ENSG00000143578.15|CREB3L4|pc|chr1:153969635:153969753:+	0	+
#Partially deleted in new
chr1	153977742	153979160	ENSG00000272654.1|AL358472.2|lncRNA|chr1:153977742:153979160:+	0	+
#Deleted in new
chr1	154208480	154208517	ENSG00000143612.19|C1orf43|pc|chr1:154208480:154208517:-	0	-
#Deleted in new
chr1	15427897	15428009	ENSG00000142634.12|EFHD2|pc|chr1:15427897:15428009:+	0	+
#Partially deleted in new
chr1	154341166	154341788	ENSG00000143515.16|ATP8B2|pc|chr1:154341166:154341788:+	0	+
#Deleted in new
chr1	154437434	154437544	ENSG00000160712.12|IL6R|pc|chr1:154437434:154437544:+	0	+
#Deleted in new
chr1	154445046	154445094	ENSG00000160712.12|IL6R|pc|chr1:154445046:154445094:+	0	+
#Partially deleted in new
chr1	15446574	15449242	ENSG00000162438.11|CTRC|pc|chr1:15446574:15449242:+	0	+
#Partially deleted in new
chr1	1544862	1546487	ENSG00000160075.11|SSU72|pc|chr1:1544862:1546487:-	0	-
#Deleted in new
chr1	154502971	154503029	ENSG00000163239.12|TDRD10|pc|chr1:154502971:154503029:+	0	+
#Deleted in new
chr1	154508422	154508481	ENSG00000163239.12|TDRD10|pc|chr1:154508422:154508481:+	0	+
#Deleted in new
chr1	154521322	154521479	ENSG00000163239.12|TDRD10|pc|chr1:154521322:154521479:+	0	+
#Deleted in new
chr1	154521365	154521479	ENSG00000163239.12|TDRD10|pc|chr1:154521365:154521479:+	0	+
#Deleted in new
chr1	154534540	154534604	ENSG00000163239.12|TDRD10|pc|chr1:154534540:154534604:+	0	+
#Deleted in new
chr1	154542730	154542821	ENSG00000163239.12|TDRD10|pc|chr1:154542730:154542821:+	0	+
#Deleted in new
chr1	154543962	154544110	ENSG00000163239.12|TDRD10|pc|chr1:154543962:154544110:+	0	+
#Deleted in new
chr1	154544371	154544517	ENSG00000163239.12|TDRD10|pc|chr1:154544371:154544517:+	0	+
#Partially deleted in new
chr1	15457085	15457623	ENSG00000142615.7|CELA2A|pc|chr1:15457085:15457623:+	0	+
#Deleted in new
chr1	154577005	154577253	ENSG00000160716.5|CHRNB2|pc|chr1:154577005:154577253:+	0	+
#Partially deleted in new
chr1	154607991	154608206	ENSG00000160710.15|ADAR|pc|chr1:154607991:154608206:-	0	-
#Deleted in new
chr1	154608750	154608812	ENSG00000160710.15|ADAR|pc|chr1:154608750:154608812:-	0	-
#Deleted in new
chr1	15481644	15481749	ENSG00000215704.9|CELA2B|pc|chr1:15481644:15481749:+	0	+
#Deleted in new
chr1	154973292	154973508	ENSG00000160691.18|SHC1|pc|chr1:154973292:154973508:-	0	-
#Deleted in new
chr1	154975530	154975624	ENSG00000173207.12|CKS1B|pc|chr1:154975530:154975624:+	0	+
#Deleted in new
chr1	154975538	154975608	ENSG00000173207.12|CKS1B|pc|chr1:154975538:154975608:+	0	+
#Partially deleted in new
chr1	154977298	154978114	ENSG00000173207.12|CKS1B|pc|chr1:154977298:154978114:+	0	+
#Deleted in new
chr11	5505350	5505605	ENSG00000196565.13|HBG2|pc|chr11:5505350:5505605:-	0	-
#Deleted in new
chr11	5505350	5505652	ENSG00000167355.7|AC087380.1|lncRNA|chr11:5505350:5505652:-	0	-
#Deleted in new
chr11	5505568	5505604	ENSG00000213931.5|HBE1|pc|chr11:5505568:5505604:-	0	-
#Deleted in new
chr11	5505568	5505613	ENSG00000167355.7|AC087380.1|lncRNA|chr11:5505568:5505613:-	0	-
#Deleted in new
chr11	5505568	5505617	ENSG00000213931.5|HBE1|pc|chr11:5505568:5505617:-	0	-
#Deleted in new
chr11	5505568	5505652	ENSG00000167355.7|AC087380.1|lncRNA|chr11:5505568:5505652:-	0	-
#Deleted in new
chr1	155138759	155138853	ENSG00000169241.17|SLC50A1|pc|chr1:155138759:155138853:+	0	+
#Deleted in new
chr1	155180434	155180621	ENSG00000163462.17|TRIM46|pc|chr1:155180434:155180621:+	0	+
#Duplicated in new
chr1	155188162	155188987	ENSG00000185499.16|MUC1|pc|chr1:155188162:155188987:-	0	-
#Deleted in new
chr1	15519880	15520001	ENSG00000132906.17|CASP9|pc|chr1:15519880:15520001:-	0	-
#Deleted in new
chr1	155244094	155244230	ENSG00000177628.15|GBA|pc|chr1:155244094:155244230:-	0	-
#Deleted in new
chr1	155244094	155244233	ENSG00000177628.15|GBA|pc|chr1:155244094:155244233:-	0	-
#Deleted in new
chr1	15524851	15524889	ENSG00000132906.17|CASP9|pc|chr1:15524851:15524889:-	0	-
#Partially deleted in new
chr1	155252748	155253732	ENSG00000160767.20|FAM189B|pc|chr1:155252748:155253732:-	0	-
#Deleted in new
chr11	55262181	55262311	ENSG00000150244.11|TRIM48|pc|chr11:55262181:55262311:+	0	+
#Deleted in new
chr11	55265599	55265695	ENSG00000150244.11|TRIM48|pc|chr11:55265599:55265695:+	0	+
#Deleted in new
chr11	55268349	55268372	ENSG00000150244.11|TRIM48|pc|chr11:55268349:55268372:+	0	+
#Deleted in new
chr1	155310335	155310453	ENSG00000160752.14|FDPS|pc|chr1:155310335:155310453:+	0	+
#Partially deleted in new
chr1	155316862	155318005	ENSG00000225855.6|RUSC1-AS1|lncRNA|chr1:155316862:155318005:-	0	-
#Deleted in new
chr1	155345962	155346207	ENSG00000116539.12|ASH1L|pc|chr1:155345962:155346207:-	0	-
#Deleted in new
chr1	155396009	155396402	ENSG00000227773.1|ASH1L-IT1|lncRNA|chr1:155396009:155396402:-	0	-
#Deleted in new
chr1	155396923	155396978	ENSG00000227773.1|ASH1L-IT1|lncRNA|chr1:155396923:155396978:-	0	-
#Deleted in new
chr1	155520224	155520356	ENSG00000116539.12|ASH1L|pc|chr1:155520224:155520356:-	0	-
#Deleted in new
chr1	15560130	15560329	ENSG00000116138.12|DNAJC16|pc|chr1:15560130:15560329:+	0	+
#Deleted in new
chr11	55605125	55605287	ENSG00000172188.5|OR4C11|pc|chr11:55605125:55605287:-	0	-
#Deleted in new
chr1	15565181	15565453	ENSG00000116138.12|DNAJC16|pc|chr1:15565181:15565453:+	0	+
#Partially deleted in new
chr1	15565610	15565956	ENSG00000272510.1|AL121992.3|lncRNA|chr1:15565610:15565956:-	0	-
#Deleted in new
chr11	55662200	55662248	ENSG00000181903.5|OR4C6|pc|chr11:55662200:55662248:+	0	+
#Partially deleted in new
chr1	155670319	155671091	ENSG00000163374.19|YY1AP1|pc|chr1:155670319:155671091:-	0	-
#Deleted in new
chr1	155679927	155680008	ENSG00000163374.19|YY1AP1|pc|chr1:155679927:155680008:-	0	-
#Deleted in new
chr11	55685900	55686160	ENSG00000254804.1|AP006437.2|lncRNA|chr11:55685900:55686160:-	0	-
#Deleted in new
chr1	155709032	155709125	ENSG00000132676.15|DAP3|pc|chr1:155709032:155709125:+	0	+
#Deleted in new
chr1	155710097	155710228	ENSG00000227673.1|AL162734.1|lncRNA|chr1:155710097:155710228:-	0	-
#Deleted in new
chr1	155710537	155710563	ENSG00000227673.1|AL162734.1|lncRNA|chr1:155710537:155710563:-	0	-
#Partially deleted in new
chr1	15572352	15573724	ENSG00000116771.5|AGMAT|pc|chr1:15572352:15573724:-	0	-
#Deleted in new
chr1	155726133	155726294	ENSG00000132676.15|DAP3|pc|chr1:155726133:155726294:+	0	+
#Deleted in new
chr1	155726835	155727038	ENSG00000132676.15|DAP3|pc|chr1:155726835:155727038:+	0	+
#Partially deleted in new
chr1	155738608	155739010	ENSG00000132676.15|DAP3|pc|chr1:155738608:155739010:+	0	+
#Partially deleted in new
chr1	15574759	15576092	ENSG00000116138.12|DNAJC16|pc|chr1:15574759:15576092:+	0	+
#Deleted in new
chr1	15575334	15575472	ENSG00000116138.12|DNAJC16|pc|chr1:15575334:15575472:+	0	+
#Deleted in new
chr1	155766	155831	ENSG00000241860.6|AL627309.5|lncRNA|chr1:155766:155831:-	0	-
#Partially deleted in new
chr1	155784374	155785374	ENSG00000116580.18|GON4L|pc|chr1:155784374:155785374:-	0	-
#Deleted in new
chr1	155831534	155831620	ENSG00000116580.18|GON4L|pc|chr1:155831534:155831620:-	0	-
#Deleted in new
chr1	155832831	155832950	ENSG00000116580.18|GON4L|pc|chr1:155832831:155832950:-	0	-
#Deleted in new
chr1	15586135	15588442	ENSG00000237301.1|AL121992.1|lncRNA|chr1:15586135:15588442:-	0	-
#Deleted in new
chr11	55883296	55883384	ENSG00000124900.12|TRIM51|pc|chr11:55883296:55883384:+	0	+
#Deleted in new
chr11	55885919	55886218	ENSG00000124900.12|TRIM51|pc|chr11:55885919:55886218:+	0	+
#Deleted in new
chr11	55886122	55886218	ENSG00000124900.12|TRIM51|pc|chr11:55886122:55886218:+	0	+
#Deleted in new
chr11	55888978	55889001	ENSG00000124900.12|TRIM51|pc|chr11:55888978:55889001:+	0	+
#Deleted in new
chr11	5590824	5591023	ENSG00000196565.13|HBG2|pc|chr11:5590824:5591023:-	0	-
#Deleted in new
chr11	5590956	5591023	ENSG00000239920.1|AC015691.1|lncRNA|chr11:5590956:5591023:-	0	-
#Deleted in new
chr1	155932272	155932714	ENSG00000132680.10|KIAA0907|pc|chr1:155932272:155932714:-	0	-
#Partially deleted in new
chr1	156001507	156001787	ENSG00000224276.1|AL355388.1|lncRNA|chr1:156001507:156001787:+	0	+
#Partially deleted in new
chr1	156010220	156015069	ENSG00000163479.13|SSR2|pc|chr1:156010220:156015069:-	0	-
#Deleted in new
chr1	156020265	156020346	ENSG00000163479.13|SSR2|pc|chr1:156020265:156020346:-	0	-
#Partially deleted in new
chr1	156020423	156020845	ENSG00000163479.13|SSR2|pc|chr1:156020423:156020845:-	0	-
#Deleted in new
chr1	156020675	156020789	ENSG00000163479.13|SSR2|pc|chr1:156020675:156020789:-	0	-
#Partially deleted in new
chr11	56030390	56038191	ENSG00000181785.2|OR5AS1|pc|chr11:56030390:56038191:+	0	+
#Deleted in new
chr1	15603088	15603626	ENSG00000237301.1|AL121992.1|lncRNA|chr1:15603088:15603626:-	0	-
#Partially deleted in new
chr1	156055262	156055993	ENSG00000116586.11|LAMTOR2|pc|chr1:156055262:156055993:+	0	+
#Deleted in new
chr1	156055495	156055675	ENSG00000116586.11|LAMTOR2|pc|chr1:156055495:156055675:+	0	+
#Deleted in new
chr1	156083520	156083613	ENSG00000160789.19|LMNA|pc|chr1:156083520:156083613:+	0	+
#Partially deleted in new
chr1	1560847	1564916	ENSG00000160075.11|SSU72|pc|chr1:1560847:1564916:-	0	-
#Duplicated in new
chr11	56104867	56107658	ENSG00000181767.3|OR8H2|pc|chr11:56104867:56107658:+	0	+
#Duplicated in new
chr11	56104871	56107658	ENSG00000181767.3|OR8H2|pc|chr11:56104871:56107658:+	0	+
#Partially deleted in new
chr11	56134720	56137038	ENSG00000167822.2|OR8J3|pc|chr11:56134720:56137038:-	0	-
#Deleted in new
chr11	56140172	56140201	ENSG00000167822.2|OR8J3|pc|chr11:56140172:56140201:-	0	-
#Deleted in new
chr11	5619763	5620023	ENSG00000258659.6|TRIM34|pc|chr11:5619763:5620023:+	0	+
#Deleted in new
chr1	156220676	156220887	ENSG00000160783.19|PMF1|pc|chr1:156220676:156220887:+	0	+
#Deleted in new
chr1	156223850	156223942	ENSG00000160783.19|PMF1|pc|chr1:156223850:156223942:+	0	+
#Deleted in new
chr1	156225556	156225668	ENSG00000160783.19|PMF1|pc|chr1:156225556:156225668:+	0	+
#Deleted in new
chr11	5626600	5626854	ENSG00000196565.13|HBG2|pc|chr11:5626600:5626854:-	0	-
#Deleted in new
chr11	56274635	56274753	ENSG00000181698.4|OR5T1|pc|chr11:56274635:56274753:+	0	+
#Deleted in new
chr1	156290088	156290360	ENSG00000198715.11|GLMP|pc|chr1:156290088:156290360:-	0	-
#Deleted in new
chr1	156290095	156290360	ENSG00000198715.11|GLMP|pc|chr1:156290095:156290360:-	0	-
#Deleted in new
chr1	156332652	156333284	ENSG00000163468.14|CCT3|pc|chr1:156332652:156333284:-	0	-
#Deleted in new
chr1	156333215	156333284	ENSG00000163468.14|CCT3|pc|chr1:156333215:156333284:-	0	-
#Deleted in new
chr1	156337078	156337240	ENSG00000163468.14|CCT3|pc|chr1:156337078:156337240:-	0	-
#Deleted in new
chr1	156338901	156338925	ENSG00000163467.11|TSACC|pc|chr1:156338901:156338925:+	0	+
#Deleted in new
chr1	156367743	156367837	ENSG00000163468.14|CCT3|pc|chr1:156367743:156367837:-	0	-
#Deleted in new
chr1	156367743	156367859	ENSG00000163468.14|CCT3|pc|chr1:156367743:156367859:-	0	-
#Deleted in new
chr1	156367743	156367873	ENSG00000163468.14|CCT3|pc|chr1:156367743:156367873:-	0	-
#Deleted in new
chr1	156371181	156371254	ENSG00000132677.12|RHBG|pc|chr1:156371181:156371254:+	0	+
#Deleted in new
chr1	156374606	156374729	ENSG00000132677.12|RHBG|pc|chr1:156374606:156374729:+	0	+
#Deleted in new
chr1	156404249	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404249:156404601:-	0	-
#Deleted in new
chr1	156404251	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404251:156404601:-	0	-
#Deleted in new
chr1	156404252	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404252:156404601:-	0	-
#Deleted in new
chr1	156404255	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404255:156404601:-	0	-
#Deleted in new
chr1	156404256	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404256:156404601:-	0	-
#Deleted in new
chr1	156404257	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404257:156404601:-	0	-
#Deleted in new
chr1	156404258	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404258:156404601:-	0	-
#Deleted in new
chr1	156404260	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404260:156404601:-	0	-
#Deleted in new
chr1	156404262	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404262:156404601:-	0	-
#Deleted in new
chr1	156404263	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404263:156404601:-	0	-
#Deleted in new
chr1	156404363	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404363:156404601:-	0	-
#Deleted in new
chr1	156404379	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404379:156404601:-	0	-
#Deleted in new
chr1	156404411	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404411:156404601:-	0	-
#Deleted in new
chr1	156404507	156404601	ENSG00000125462.16|C1orf61|pc|chr1:156404507:156404601:-	0	-
#Duplicated in new
chr11	5641166	5641298	ENSG00000258659.6|TRIM34|pc|chr11:5641166:5641298:+	0	+
#Deleted in new
chr1	156416768	156416839	ENSG00000125462.16|C1orf61|pc|chr1:156416768:156416839:-	0	-
#Deleted in new
chr1	156416768	156416864	ENSG00000125462.16|C1orf61|pc|chr1:156416768:156416864:-	0	-
#Deleted in new
chr1	156452896	156453252	ENSG00000236947.5|AL139412.1|lncRNA|chr1:156452896:156453252:-	0	-
#Deleted in new
chr1	156454642	156454795	ENSG00000236947.5|AL139412.1|lncRNA|chr1:156454642:156454795:-	0	-
#Deleted in new
chr1	156455627	156455721	ENSG00000236947.5|AL139412.1|lncRNA|chr1:156455627:156455721:-	0	-
#Deleted in new
chr1	156456352	156456466	ENSG00000236947.5|AL139412.1|lncRNA|chr1:156456352:156456466:-	0	-
#Partially deleted in new
chr1	156456352	156456577	ENSG00000236947.5|AL139412.1|lncRNA|chr1:156456352:156456577:-	0	-
#Deleted in new
chr11	5645684	5645789	ENSG00000196565.13|HBG2|pc|chr11:5645684:5645789:-	0	-
#Deleted in new
chr11	56466106	56466248	ENSG00000284732.1|AP002512.4|pc|chr11:56466106:56466248:-	0	-
#Partially deleted in new
chr1	156509853	156511681	ENSG00000260460.1|AL365181.1|lncRNA|chr1:156509853:156511681:+	0	+
#Split in new
chr11	56609235	56613519	ENSG00000255012.2|OR5M1|pc|chr11:56609235:56613519:-	0	-
#Partially deleted in new
chr1	156614741	156615288	ENSG00000272971.1|AL365181.4|lncRNA|chr1:156614741:156615288:-	0	-
#Deleted in new
chr11	5663562	5664173	ENSG00000132256.18|TRIM5|pc|chr11:5663562:5664173:-	0	-
#Deleted in new
chr11	5663830	5664173	ENSG00000132256.18|TRIM5|pc|chr11:5663830:5664173:-	0	-
#Deleted in new
chr11	5664057	5664173	ENSG00000132256.18|TRIM5|pc|chr11:5664057:5664173:-	0	-
#Partially deleted in new
chr1	156641665	156644887	ENSG00000272405.1|AL365181.3|lncRNA|chr1:156641665:156644887:-	0	-
#Partially deleted in new
chr1	156687694	156690881	ENSG00000237588.2|AL590666.3|lncRNA|chr1:156687694:156690881:-	0	-
#Deleted in new
chr1	156712211	156712347	ENSG00000223356.1|AL590666.1|lncRNA|chr1:156712211:156712347:-	0	-
#Deleted in new
chr1	156712877	156713174	ENSG00000223356.1|AL590666.1|lncRNA|chr1:156712877:156713174:-	0	-
#Partially deleted in new
chr1	156721890	156723462	ENSG00000143319.16|ISG20L2|pc|chr1:156721890:156723462:-	0	-
#Deleted in new
chr1	156729515	156729562	ENSG00000143303.11|RRNAD1|pc|chr1:156729515:156729562:+	0	+
#Deleted in new
chr1	156740378	156740562	ENSG00000143314.12|MRPL24|pc|chr1:156740378:156740562:-	0	-
#Duplicated in new
chr11	56741222	56743708	ENSG00000172457.6|OR9G4|pc|chr11:56741222:56743708:-	0	-
#Duplicated in new
chr11	56741222	56743711	ENSG00000172457.6|OR9G4|pc|chr11:56741222:56743711:-	0	-
#Duplicated in new
chr11	56741222	56743784	ENSG00000172457.6|OR9G4|pc|chr11:56741222:56743784:-	0	-
#Duplicated in new
chr11	56741222	56743788	ENSG00000172457.6|OR9G4|pc|chr11:56741222:56743788:-	0	-
#Deleted in new
chr1	156752228	156752272	ENSG00000143321.18|HDGF|pc|chr1:156752228:156752272:-	0	-
#Deleted in new
chr1	156752228	156752448	ENSG00000143321.18|HDGF|pc|chr1:156752228:156752448:-	0	-
#Deleted in new
chr1	156755536	156755664	ENSG00000143321.18|HDGF|pc|chr1:156755536:156755664:-	0	-
#Deleted in new
chr1	156758982	156759219	ENSG00000143321.18|HDGF|pc|chr1:156758982:156759219:-	0	-
#Deleted in new
chr1	156791066	156791162	ENSG00000143294.14|PRCC|pc|chr1:156791066:156791162:+	0	+
#Deleted in new
chr1	156837208	156837225	ENSG00000198400.11|NTRK1|pc|chr1:156837208:156837225:+	0	+
#Deleted in new
chr1	156837725	156837865	ENSG00000198400.11|NTRK1|pc|chr1:156837725:156837865:+	0	+
#Deleted in new
chr11	5683985	5684139	ENSG00000132256.18|TRIM5|pc|chr11:5683985:5684139:-	0	-
#Deleted in new
chr11	56848477	56848615	ENSG00000255433.5|AP001803.2|lncRNA|chr11:56848477:56848615:+	0	+
#Deleted in new
chr11	56848567	56848615	ENSG00000255433.5|AP001803.2|lncRNA|chr11:56848567:56848615:+	0	+
#Deleted in new
chr11	56871090	56871251	ENSG00000255433.5|AP001803.2|lncRNA|chr11:56871090:56871251:+	0	+
#Deleted in new
chr1	156893697	156893837	ENSG00000187800.13|PEAR1|pc|chr1:156893697:156893837:+	0	+
#Deleted in new
chr1	156893719	156893837	ENSG00000187800.13|PEAR1|pc|chr1:156893719:156893837:+	0	+
#Deleted in new
chr1	156893724	156893837	ENSG00000187800.13|PEAR1|pc|chr1:156893724:156893837:+	0	+
#Deleted in new
chr1	156893730	156893837	ENSG00000187800.13|PEAR1|pc|chr1:156893730:156893837:+	0	+
#Deleted in new
chr11	5689696	5689704	ENSG00000132274.15|TRIM22|pc|chr11:5689696:5689704:+	0	+
#Deleted in new
chr11	5691026	5691176	ENSG00000132274.15|TRIM22|pc|chr11:5691026:5691176:+	0	+
#Deleted in new
chr11	5714686	5715043	ENSG00000132274.15|TRIM22|pc|chr11:5714686:5715043:+	0	+
#Deleted in new
chr1	157232230	157232540	ENSG00000228239.1|AL138900.1|lncRNA|chr1:157232230:157232540:-	0	-
#Deleted in new
chr1	157237047	157237136	ENSG00000228239.1|AL138900.1|lncRNA|chr1:157237047:157237136:-	0	-
#Deleted in new
chr1	15725592	15725872	ENSG00000237938.5|AL450998.3|lncRNA|chr1:15725592:15725872:-	0	-
#Deleted in new
chr1	157280715	157280853	ENSG00000271736.1|AL138900.3|lncRNA|chr1:157280715:157280853:+	0	+
#Deleted in new
chr1	157282577	157283068	ENSG00000271736.1|AL138900.3|lncRNA|chr1:157282577:157283068:+	0	+
#Deleted in new
chr1	157287702	157287786	ENSG00000237189.1|AL138900.2|lncRNA|chr1:157287702:157287786:-	0	-
#Deleted in new
chr1	157287981	157288053	ENSG00000237189.1|AL138900.2|lncRNA|chr1:157287981:157288053:-	0	-
#Partially deleted in new
chr11	57350324	57350701	ENSG00000109991.8|P2RX3|pc|chr11:57350324:57350701:+	0	+
#Deleted in new
chr1	15739034	15739097	ENSG00000162461.7|SLC25A34|pc|chr1:15739034:15739097:+	0	+
#Deleted in new
chr1	15740050	15740222	ENSG00000224459.1|AL450998.2|lncRNA|chr1:15740050:15740222:-	0	-
#Deleted in new
chr11	57423682	57423723	ENSG00000134802.17|SLC43A3|pc|chr11:57423682:57423723:-	0	-
#Partially deleted in new
chr1	1574974	1577075	ENSG00000215014.4|AL645728.1|lncRNA|chr1:1574974:1577075:+	0	+
#Deleted in new
chr1	157513376	157515764	ENSG00000143297.18|FCRL5|pc|chr1:157513376:157515764:-	0	-
#Deleted in new
chr1	157513377	157515764	ENSG00000143297.18|FCRL5|pc|chr1:157513377:157515764:-	0	-
#Deleted in new
chr1	157515841	157515873	ENSG00000143297.18|FCRL5|pc|chr1:157515841:157515873:-	0	-
#Deleted in new
chr1	157515841	157516073	ENSG00000143297.18|FCRL5|pc|chr1:157515841:157516073:-	0	-
#Partially deleted in new
chr1	157531963	157534892	ENSG00000143297.18|FCRL5|pc|chr1:157531963:157534892:-	0	-
#Partially deleted in new
chr1	157541824	157543137	ENSG00000143297.18|FCRL5|pc|chr1:157541824:157543137:-	0	-
#Deleted in new
chr1	157546187	157546280	ENSG00000143297.18|FCRL5|pc|chr1:157546187:157546280:-	0	-
#Deleted in new
chr1	157573748	157575610	ENSG00000163518.10|FCRL4|pc|chr1:157573748:157575610:-	0	-
#Deleted in new
chr1	157574820	157575610	ENSG00000163518.10|FCRL4|pc|chr1:157574820:157575610:-	0	-
#Deleted in new
chr1	157575568	157575610	ENSG00000163518.10|FCRL4|pc|chr1:157575568:157575610:-	0	-
#Deleted in new
chr1	157575698	157575730	ENSG00000163518.10|FCRL4|pc|chr1:157575698:157575730:-	0	-
#Deleted in new
chr1	157578473	157578542	ENSG00000163518.10|FCRL4|pc|chr1:157578473:157578542:-	0	-
#Partially deleted in new
chr1	157578473	157578852	ENSG00000163518.10|FCRL4|pc|chr1:157578473:157578852:-	0	-
#Deleted in new
chr1	157580320	157580348	ENSG00000163518.10|FCRL4|pc|chr1:157580320:157580348:-	0	-
#Deleted in new
chr1	157580320	157580537	ENSG00000163518.10|FCRL4|pc|chr1:157580320:157580537:-	0	-
#Deleted in new
chr1	157581530	157581644	ENSG00000163518.10|FCRL4|pc|chr1:157581530:157581644:-	0	-
#Partially deleted in new
chr1	157587864	157588119	ENSG00000163518.10|FCRL4|pc|chr1:157587864:157588119:-	0	-
#Duplicated in new
chr1	157589203	157589458	ENSG00000163518.10|FCRL4|pc|chr1:157589203:157589458:-	0	-
#Deleted in new
chr1	157597913	157598080	ENSG00000163518.10|FCRL4|pc|chr1:157597913:157598080:-	0	-
#Partially deleted in new
chr11	57650297	57652790	ENSG00000254602.1|AP000662.2|lncRNA|chr11:57650297:57652790:+	0	+
#Deleted in new
chr1	157674320	157674677	ENSG00000160856.20|FCRL3|pc|chr1:157674320:157674677:-	0	-
#Deleted in new
chr1	157676480	157676768	ENSG00000160856.20|FCRL3|pc|chr1:157676480:157676768:-	0	-
#Deleted in new
chr1	157676481	157678856	ENSG00000160856.20|FCRL3|pc|chr1:157676481:157678856:-	0	-
#Deleted in new
chr1	157676675	157676732	ENSG00000160856.20|FCRL3|pc|chr1:157676675:157676732:-	0	-
#Deleted in new
chr1	157678320	157678856	ENSG00000160856.20|FCRL3|pc|chr1:157678320:157678856:-	0	-
#Deleted in new
chr1	157678594	157678856	ENSG00000160856.20|FCRL3|pc|chr1:157678594:157678856:-	0	-
#Deleted in new
chr1	157678690	157679185	ENSG00000160856.20|FCRL3|pc|chr1:157678690:157679185:-	0	-
#Deleted in new
chr1	157678742	157678856	ENSG00000160856.20|FCRL3|pc|chr1:157678742:157678856:-	0	-
#Deleted in new
chr1	157678941	157678973	ENSG00000160856.20|FCRL3|pc|chr1:157678941:157678973:-	0	-
#Deleted in new
chr1	157680701	157680770	ENSG00000160856.20|FCRL3|pc|chr1:157680701:157680770:-	0	-
#Deleted in new
chr1	157683216	157683244	ENSG00000160856.20|FCRL3|pc|chr1:157683216:157683244:-	0	-
#Deleted in new
chr1	15768527	15768630	ENSG00000162458.12|FBLIM1|pc|chr1:15768527:15768630:+	0	+
#Deleted in new
chr1	157689797	157689890	ENSG00000160856.20|FCRL3|pc|chr1:157689797:157689890:-	0	-
#Deleted in new
chr1	157689797	157689917	ENSG00000160856.20|FCRL3|pc|chr1:157689797:157689917:-	0	-
#Deleted in new
chr1	157691761	157692024	ENSG00000227217.1|AL356276.1|lncRNA|chr1:157691761:157692024:+	0	+
#Deleted in new
chr1	157698383	157698629	ENSG00000160856.20|FCRL3|pc|chr1:157698383:157698629:-	0	-
#Deleted in new
chr1	157699691	157699712	ENSG00000160856.20|FCRL3|pc|chr1:157699691:157699712:-	0	-
#Deleted in new
chr1	157745732	157746774	ENSG00000132704.15|FCRL2|pc|chr1:157745732:157746774:-	0	-
#Deleted in new
chr1	157745734	157746774	ENSG00000132704.15|FCRL2|pc|chr1:157745734:157746774:-	0	-
#Deleted in new
chr1	157746870	157746899	ENSG00000132704.15|FCRL2|pc|chr1:157746870:157746899:-	0	-
#Deleted in new
chr1	157748552	157748618	ENSG00000132704.15|FCRL2|pc|chr1:157748552:157748618:-	0	-
#Deleted in new
chr1	157748874	157748960	ENSG00000132704.15|FCRL2|pc|chr1:157748874:157748960:-	0	-
#Deleted in new
chr1	157749649	157749677	ENSG00000132704.15|FCRL2|pc|chr1:157749649:157749677:-	0	-
#Deleted in new
chr1	157766613	157766971	ENSG00000132704.15|FCRL2|pc|chr1:157766613:157766971:-	0	-
#Deleted in new
chr1	157766854	157766971	ENSG00000132704.15|FCRL2|pc|chr1:157766854:157766971:-	0	-
#Deleted in new
chr1	157775774	157775795	ENSG00000132704.15|FCRL2|pc|chr1:157775774:157775795:-	0	-
#Deleted in new
chr1	157777042	157777122	ENSG00000132704.15|FCRL2|pc|chr1:157777042:157777122:-	0	-
#Deleted in new
chr1	157777042	157777132	ENSG00000132704.15|FCRL2|pc|chr1:157777042:157777132:-	0	-
#Deleted in new
chr1	157898199	157898256	ENSG00000073754.5|CD5L|pc|chr1:157898199:157898256:-	0	-
#Deleted in new
chr11	58023880	58024104	ENSG00000186509.4|OR9Q1|pc|chr11:58023880:58024104:+	0	+
#Deleted in new
chr11	58047256	58047547	ENSG00000255146.1|AP004247.2|lncRNA|chr11:58047256:58047547:-	0	-
#Deleted in new
chr11	58055869	58055947	ENSG00000186509.4|OR9Q1|pc|chr11:58055869:58055947:+	0	+
#Deleted in new
chr11	58057682	58057835	ENSG00000255146.1|AP004247.2|lncRNA|chr11:58057682:58057835:-	0	-
#Deleted in new
chr11	58059925	58060138	ENSG00000255146.1|AP004247.2|lncRNA|chr11:58059925:58060138:-	0	-
#Split in new
chr1	15807168	15809348	ENSG00000233954.6|UQCRHL|pc|chr1:15807168:15809348:-	0	-
#Duplicated in new
chr11	58116741	58119466	ENSG00000172377.2|OR9I1|pc|chr11:58116741:58119466:-	0	-
#Deleted in new
chr1	158132039	158132656	ENSG00000231666.6|LINC01704|lncRNA|chr1:158132039:158132656:-	0	-
#Deleted in new
chr1	158132043	158132401	ENSG00000231666.6|LINC01704|lncRNA|chr1:158132043:158132401:-	0	-
#Deleted in new
chr1	158132043	158132656	ENSG00000231666.6|LINC01704|lncRNA|chr1:158132043:158132656:-	0	-
#Deleted in new
chr1	158132577	158132656	ENSG00000231666.6|LINC01704|lncRNA|chr1:158132577:158132656:-	0	-
#Deleted in new
chr1	158133114	158133193	ENSG00000231666.6|LINC01704|lncRNA|chr1:158133114:158133193:-	0	-
#Deleted in new
chr1	158140497	158140630	ENSG00000231666.6|LINC01704|lncRNA|chr1:158140497:158140630:-	0	-
#Deleted in new
chr1	158140497	158140639	ENSG00000231666.6|LINC01704|lncRNA|chr1:158140497:158140639:-	0	-
#Deleted in new
chr1	158146766	158146929	ENSG00000231666.6|LINC01704|lncRNA|chr1:158146766:158146929:-	0	-
#Deleted in new
chr1	158197921	158199835	ENSG00000176320.2|AL138899.1|lncRNA|chr1:158197921:158199835:-	0	-
#Deleted in new
chr1	158203792	158203877	ENSG00000176320.2|AL138899.1|lncRNA|chr1:158203792:158203877:-	0	-
#Deleted in new
chr1	158254136	158254727	ENSG00000158477.6|CD1A|pc|chr1:158254136:158254727:+	0	+
#Deleted in new
chr1	158257420	158257511	ENSG00000158477.6|CD1A|pc|chr1:158257420:158257511:+	0	+
#Deleted in new
chr1	158257680	158258269	ENSG00000158477.6|CD1A|pc|chr1:158257680:158258269:+	0	+
#Deleted in new
chr1	158289785	158290125	ENSG00000158481.12|CD1C|pc|chr1:158289785:158290125:+	0	+
#Deleted in new
chr1	158293211	158293302	ENSG00000158481.12|CD1C|pc|chr1:158293211:158293302:+	0	+
#Deleted in new
chr1	158293454	158293617	ENSG00000158481.12|CD1C|pc|chr1:158293454:158293617:+	0	+
#Deleted in new
chr1	158293454	158293630	ENSG00000158481.12|CD1C|pc|chr1:158293454:158293630:+	0	+
#Deleted in new
chr1	158327950	158328257	ENSG00000158485.10|CD1B|pc|chr1:158327950:158328257:-	0	-
#Deleted in new
chr1	158328920	158329014	ENSG00000158485.10|CD1B|pc|chr1:158328920:158329014:-	0	-
#Deleted in new
chr1	158331362	158331531	ENSG00000158485.10|CD1B|pc|chr1:158331362:158331531:-	0	-
#Deleted in new
chr1	158353695	158354046	ENSG00000158488.15|CD1E|pc|chr1:158353695:158354046:+	0	+
#Deleted in new
chr1	158353749	158354046	ENSG00000158488.15|CD1E|pc|chr1:158353749:158354046:+	0	+
#Deleted in new
chr1	158353843	158354046	ENSG00000158488.15|CD1E|pc|chr1:158353843:158354046:+	0	+
#Deleted in new
chr1	158353882	158354046	ENSG00000158488.15|CD1E|pc|chr1:158353882:158354046:+	0	+
#Deleted in new
chr1	158353884	158354046	ENSG00000158488.15|CD1E|pc|chr1:158353884:158354046:+	0	+
#Deleted in new
chr1	158353909	158354046	ENSG00000158488.15|CD1E|pc|chr1:158353909:158354046:+	0	+
#Deleted in new
chr1	158353915	158354046	ENSG00000158488.15|CD1E|pc|chr1:158353915:158354046:+	0	+
#Deleted in new
chr1	158353988	158354046	ENSG00000158488.15|CD1E|pc|chr1:158353988:158354046:+	0	+
#Deleted in new
chr1	158354179	158354265	ENSG00000158488.15|CD1E|pc|chr1:158354179:158354265:+	0	+
#Deleted in new
chr1	158356497	158356591	ENSG00000158488.15|CD1E|pc|chr1:158356497:158356591:+	0	+
#Deleted in new
chr1	158356727	158356896	ENSG00000158488.15|CD1E|pc|chr1:158356727:158356896:+	0	+
#Deleted in new
chr1	158356727	158356948	ENSG00000158488.15|CD1E|pc|chr1:158356727:158356948:+	0	+
#Deleted in new
chr1	158356727	158357196	ENSG00000158488.15|CD1E|pc|chr1:158356727:158357196:+	0	+
#Deleted in new
chr1	158356727	158357522	ENSG00000158488.15|CD1E|pc|chr1:158356727:158357522:+	0	+
#Deleted in new
chr1	158356727	158357553	ENSG00000158488.15|CD1E|pc|chr1:158356727:158357553:+	0	+
#Deleted in new
chr1	158356763	158356896	ENSG00000158488.15|CD1E|pc|chr1:158356763:158356896:+	0	+
#Deleted in new
chr1	158356763	158357492	ENSG00000158488.15|CD1E|pc|chr1:158356763:158357492:+	0	+
#Deleted in new
chr1	158356763	158357497	ENSG00000158488.15|CD1E|pc|chr1:158356763:158357497:+	0	+
#Deleted in new
chr1	158356763	158357499	ENSG00000158488.15|CD1E|pc|chr1:158356763:158357499:+	0	+
#Deleted in new
chr1	158356763	158357529	ENSG00000158488.15|CD1E|pc|chr1:158356763:158357529:+	0	+
#Deleted in new
chr11	58428018	58428121	ENSG00000172365.3|OR5B2|pc|chr11:58428018:58428121:-	0	-
#Deleted in new
chr1	158461573	158461774	ENSG00000173285.4|OR10K1|pc|chr1:158461573:158461774:+	0	+
#Deleted in new
chr1	158461717	158461774	ENSG00000173285.4|OR10K1|pc|chr1:158461717:158461774:+	0	+
#Deleted in new
chr1	158461833	158461904	ENSG00000173285.4|OR10K1|pc|chr1:158461833:158461904:+	0	+
#Split in new
chr1	158465405	158468979	ENSG00000173285.4|OR10K1|pc|chr1:158465405:158468979:+	0	+
#Deleted in new
chr1	158470767	158470857	ENSG00000173285.4|OR10K1|pc|chr1:158470767:158470857:+	0	+
#Deleted in new
chr1	158472219	158472352	ENSG00000198965.4|OR10R2|pc|chr1:158472219:158472352:+	0	+
#Deleted in new
chr1	158474453	158474667	ENSG00000236656.1|AL365440.2|lncRNA|chr1:158474453:158474667:-	0	-
#Deleted in new
chr1	158474455	158474667	ENSG00000236656.1|AL365440.2|lncRNA|chr1:158474455:158474667:-	0	-
#Deleted in new
chr1	158494401	158494554	ENSG00000236656.1|AL365440.2|lncRNA|chr1:158494401:158494554:-	0	-
#Deleted in new
chr1	158494401	158494886	ENSG00000236656.1|AL365440.2|lncRNA|chr1:158494401:158494886:-	0	-
#Deleted in new
chr1	158494654	158494717	ENSG00000236656.1|AL365440.2|lncRNA|chr1:158494654:158494717:-	0	-
#Deleted in new
chr11	58497887	58498004	ENSG00000255299.5|AP003557.1|lncRNA|chr11:58497887:58498004:-	0	-
#Deleted in new
chr11	58497914	58498004	ENSG00000255299.5|AP003557.1|lncRNA|chr11:58497914:58498004:-	0	-
#Deleted in new
chr11	58497983	58498004	ENSG00000255299.5|AP003557.1|lncRNA|chr11:58497983:58498004:-	0	-
#Deleted in new
chr11	58498172	58498390	ENSG00000255299.5|AP003557.1|lncRNA|chr11:58498172:58498390:-	0	-
#Deleted in new
chr11	58502786	58503036	ENSG00000255299.5|AP003557.1|lncRNA|chr11:58502786:58503036:-	0	-
#Deleted in new
chr11	58503689	58503816	ENSG00000255299.5|AP003557.1|lncRNA|chr11:58503689:58503816:-	0	-
#Deleted in new
chr11	58505468	58505595	ENSG00000255299.5|AP003557.1|lncRNA|chr11:58505468:58505595:-	0	-
#Deleted in new
chr11	58505468	58505758	ENSG00000255299.5|AP003557.1|lncRNA|chr11:58505468:58505758:-	0	-
#Split in new
chr1	158544549	158548111	ENSG00000197532.2|OR6Y1|pc|chr1:158544549:158548111:-	0	-
#Deleted in new
chr11	5855751	5855854	ENSG00000132256.18|TRIM5|pc|chr11:5855751:5855854:-	0	-
#Deleted in new
chr1	158611785	158612025	ENSG00000163554.12|SPTA1|pc|chr1:158611785:158612025:-	0	-
#Deleted in new
chr11	58640425	58640676	ENSG00000149124.10|GLYAT|pc|chr11:58640425:58640676:-	0	-
#Deleted in new
chr1	158720682	158720720	ENSG00000203757.2|OR6K3|pc|chr1:158720682:158720720:-	0	-
#Deleted in new
chr11	58728663	58728729	ENSG00000149124.10|GLYAT|pc|chr11:58728663:58728729:-	0	-
#Deleted in new
chr11	58731834	58731928	ENSG00000149124.10|GLYAT|pc|chr11:58731834:58731928:-	0	-
#Deleted in new
chr11	58731834	58731961	ENSG00000149124.10|GLYAT|pc|chr11:58731834:58731961:-	0	-
#Deleted in new
chr11	58731834	58731974	ENSG00000149124.10|GLYAT|pc|chr11:58731834:58731974:-	0	-
#Deleted in new
chr1	158747813	158747899	ENSG00000197403.4|OR6N1|pc|chr1:158747813:158747899:-	0	-
#Deleted in new
chr1	158831316	158831557	ENSG00000163563.7|MNDA|pc|chr1:158831316:158831557:+	0	+
#Deleted in new
chr1	158831350	158831557	ENSG00000163563.7|MNDA|pc|chr1:158831350:158831557:+	0	+
#Partially deleted in new
chr11	58834064	58834837	ENSG00000156689.6|GLYATL2|pc|chr11:58834064:58834837:-	0	-
#Partially deleted in new
chr11	58834096	58834837	ENSG00000156689.6|GLYATL2|pc|chr11:58834096:58834837:-	0	-
#Deleted in new
chr11	58837014	58837177	ENSG00000156689.6|GLYATL2|pc|chr11:58837014:58837177:-	0	-
#Deleted in new
chr11	58840693	58840831	ENSG00000156689.6|GLYATL2|pc|chr11:58840693:58840831:-	0	-
#Deleted in new
chr11	58844433	58844526	ENSG00000156689.6|GLYATL2|pc|chr11:58844433:58844526:-	0	-
#Deleted in new
chr11	58844433	58844784	ENSG00000156689.6|GLYATL2|pc|chr11:58844433:58844784:-	0	-
#Deleted in new
chr11	58904155	58904215	ENSG00000156689.6|GLYATL2|pc|chr11:58904155:58904215:-	0	-
#Deleted in new
chr11	58905397	58905661	ENSG00000166840.13|GLYATL1|pc|chr11:58905397:58905661:+	0	+
#Deleted in new
chr11	58905423	58905661	ENSG00000166840.13|GLYATL1|pc|chr11:58905423:58905661:+	0	+
#Deleted in new
chr11	58907240	58908598	ENSG00000166840.13|GLYATL1|pc|chr11:58907240:58908598:+	0	+
#Deleted in new
chr11	58917014	58917284	ENSG00000255523.1|AP001652.1|lncRNA|chr11:58917014:58917284:-	0	-
#Deleted in new
chr11	58927628	58927829	ENSG00000166840.13|GLYATL1|pc|chr11:58927628:58927829:+	0	+
#Deleted in new
chr11	58927634	58927829	ENSG00000166840.13|GLYATL1|pc|chr11:58927634:58927829:+	0	+
#Deleted in new
chr11	58927700	58927829	ENSG00000166840.13|GLYATL1|pc|chr11:58927700:58927829:+	0	+
#Deleted in new
chr11	58927712	58927829	ENSG00000166840.13|GLYATL1|pc|chr11:58927712:58927829:+	0	+
#Deleted in new
chr11	58928316	58928689	ENSG00000255523.1|AP001652.1|lncRNA|chr11:58928316:58928689:-	0	-
#Deleted in new
chr11	58933642	58935698	ENSG00000255240.5|AP001636.3|lncRNA|chr11:58933642:58935698:-	0	-
#Deleted in new
chr11	58939447	58939650	ENSG00000166840.13|GLYATL1|pc|chr11:58939447:58939650:+	0	+
#Deleted in new
chr11	58939483	58939650	ENSG00000166840.13|GLYATL1|pc|chr11:58939483:58939650:+	0	+
#Deleted in new
chr11	58942539	58942584	ENSG00000166840.13|GLYATL1|pc|chr11:58942539:58942584:+	0	+
#Deleted in new
chr11	58943248	58943322	ENSG00000166840.13|GLYATL1|pc|chr11:58943248:58943322:+	0	+
#Deleted in new
chr11	58943259	58943322	ENSG00000166840.13|GLYATL1|pc|chr11:58943259:58943322:+	0	+
#Deleted in new
chr11	58943286	58943322	ENSG00000166840.13|GLYATL1|pc|chr11:58943286:58943322:+	0	+
#Deleted in new
chr11	58943311	58943666	ENSG00000166840.13|GLYATL1|pc|chr11:58943311:58943666:+	0	+
#Deleted in new
chr11	58943315	58943666	ENSG00000166840.13|GLYATL1|pc|chr11:58943315:58943666:+	0	+
#Deleted in new
chr11	58943370	58943460	ENSG00000166840.13|GLYATL1|pc|chr11:58943370:58943460:+	0	+
#Deleted in new
chr11	58943542	58943666	ENSG00000166840.13|GLYATL1|pc|chr11:58943542:58943666:+	0	+
#Partially deleted in new
chr11	58946783	58947965	ENSG00000166840.13|GLYATL1|pc|chr11:58946783:58947965:+	0	+
#Deleted in new
chr11	58947045	58947068	ENSG00000166840.13|GLYATL1|pc|chr11:58947045:58947068:+	0	+
#Deleted in new
chr11	58947045	58947165	ENSG00000166840.13|GLYATL1|pc|chr11:58947045:58947165:+	0	+
#Deleted in new
chr11	58947045	58947261	ENSG00000166840.13|GLYATL1|pc|chr11:58947045:58947261:+	0	+
#Deleted in new
chr11	58947045	58947475	ENSG00000166840.13|GLYATL1|pc|chr11:58947045:58947475:+	0	+
#Deleted in new
chr11	58947087	58947165	ENSG00000166840.13|GLYATL1|pc|chr11:58947087:58947165:+	0	+
#Deleted in new
chr11	58955175	58955313	ENSG00000166840.13|GLYATL1|pc|chr11:58955175:58955313:+	0	+
#Deleted in new
chr11	58955175	58955319	ENSG00000166840.13|GLYATL1|pc|chr11:58955175:58955319:+	0	+
#Deleted in new
chr11	58955175	58955334	ENSG00000166840.13|GLYATL1|pc|chr11:58955175:58955334:+	0	+
#Deleted in new
chr11	58955175	58955353	ENSG00000166840.13|GLYATL1|pc|chr11:58955175:58955353:+	0	+
#Partially deleted in new
chr11	58955609	58956403	ENSG00000166840.13|GLYATL1|pc|chr11:58955609:58956403:+	0	+
#Partially deleted in new
chr11	58955609	58956405	ENSG00000166840.13|GLYATL1|pc|chr11:58955609:58956405:+	0	+
#Partially deleted in new
chr11	58955609	58956406	ENSG00000166840.13|GLYATL1|pc|chr11:58955609:58956406:+	0	+
#Partially deleted in new
chr11	58955609	58956430	ENSG00000166840.13|GLYATL1|pc|chr11:58955609:58956430:+	0	+
#Partially deleted in new
chr11	58955609	58957043	ENSG00000166840.13|GLYATL1|pc|chr11:58955609:58957043:+	0	+
#Deleted in new
chr11	58958216	58958820	ENSG00000255240.5|AP001636.3|lncRNA|chr11:58958216:58958820:-	0	-
#Deleted in new
chr11	58968941	58969073	ENSG00000255240.5|AP001636.3|lncRNA|chr11:58968941:58969073:-	0	-
#Deleted in new
chr11	58968952	58969073	ENSG00000255240.5|AP001636.3|lncRNA|chr11:58968952:58969073:-	0	-
#Deleted in new
chr11	58979127	58979285	ENSG00000255240.5|AP001636.3|lncRNA|chr11:58979127:58979285:-	0	-
#Partially deleted in new
chr11	58979127	58979325	ENSG00000255240.5|AP001636.3|lncRNA|chr11:58979127:58979325:-	0	-
#Deleted in new
chr11	58994002	58994051	ENSG00000255240.5|AP001636.3|lncRNA|chr11:58994002:58994051:-	0	-
#Deleted in new
chr1	159005961	159006041	ENSG00000163565.18|IFI16|pc|chr1:159005961:159006041:+	0	+
#Deleted in new
chr11	59051259	59051308	ENSG00000255240.5|AP001636.3|lncRNA|chr11:59051259:59051308:-	0	-
#Deleted in new
chr11	59053456	59053626	ENSG00000255240.5|AP001636.3|lncRNA|chr11:59053456:59053626:-	0	-
#Deleted in new
chr11	59055294	59055446	ENSG00000255240.5|AP001636.3|lncRNA|chr11:59055294:59055446:-	0	-
#Deleted in new
chr11	59058371	59058450	ENSG00000255240.5|AP001636.3|lncRNA|chr11:59058371:59058450:-	0	-
#Deleted in new
chr11	59058371	59058659	ENSG00000255240.5|AP001636.3|lncRNA|chr11:59058371:59058659:-	0	-
#Deleted in new
chr11	59086306	59086384	ENSG00000255151.2|GLYATL1P3|pc|chr11:59086306:59086384:+	0	+
#Deleted in new
chr11	59093933	59094111	ENSG00000255151.2|GLYATL1P3|pc|chr11:59093933:59094111:+	0	+
#Deleted in new
chr11	59107184	59107296	ENSG00000189057.10|FAM111B|pc|chr11:59107184:59107296:+	0	+
#Deleted in new
chr11	59107235	59107296	ENSG00000189057.10|FAM111B|pc|chr11:59107235:59107296:+	0	+
#Deleted in new
chr11	59107236	59107296	ENSG00000189057.10|FAM111B|pc|chr11:59107236:59107296:+	0	+
#Deleted in new
chr11	59108667	59108712	ENSG00000189057.10|FAM111B|pc|chr11:59108667:59108712:+	0	+
#Deleted in new
chr11	59109533	59109706	ENSG00000189057.10|FAM111B|pc|chr11:59109533:59109706:+	0	+
#Deleted in new
chr11	59109539	59109706	ENSG00000189057.10|FAM111B|pc|chr11:59109539:59109706:+	0	+
#Deleted in new
chr11	59109539	59110007	ENSG00000189057.10|FAM111B|pc|chr11:59109539:59110007:+	0	+
#Deleted in new
chr11	59130132	59130300	ENSG00000245571.6|AP001258.1|lncRNA|chr11:59130132:59130300:-	0	-
#Deleted in new
chr1	159132242	159132356	ENSG00000163568.14|AIM2|pc|chr1:159132242:159132356:-	0	-
#Deleted in new
chr11	59134223	59135588	ENSG00000245571.6|AP001258.1|lncRNA|chr11:59134223:59135588:-	0	-
#Deleted in new
chr11	59135289	59135588	ENSG00000245571.6|AP001258.1|lncRNA|chr11:59135289:59135588:-	0	-
#Deleted in new
chr11	59135924	59136281	ENSG00000245571.6|AP001258.1|lncRNA|chr11:59135924:59136281:-	0	-
#Deleted in new
chr11	59136056	59136281	ENSG00000245571.6|AP001258.1|lncRNA|chr11:59136056:59136281:-	0	-
#Deleted in new
chr11	59139714	59140091	ENSG00000245571.6|AP001258.1|lncRNA|chr11:59139714:59140091:-	0	-
#Deleted in new
chr11	59139956	59140115	ENSG00000245571.6|AP001258.1|lncRNA|chr11:59139956:59140115:-	0	-
#Deleted in new
chr11	59139956	59140167	ENSG00000245571.6|AP001258.1|lncRNA|chr11:59139956:59140167:-	0	-
#Deleted in new
chr11	59142614	59142755	ENSG00000245571.6|AP001258.1|lncRNA|chr11:59142614:59142755:-	0	-
#Deleted in new
chr11	59142614	59142771	ENSG00000245571.6|AP001258.1|lncRNA|chr11:59142614:59142771:-	0	-
#Deleted in new
chr11	59142747	59142946	ENSG00000166801.15|FAM111A|pc|chr11:59142747:59142946:+	0	+
#Deleted in new
chr11	59142844	59142969	ENSG00000166801.15|FAM111A|pc|chr11:59142844:59142969:+	0	+
#Deleted in new
chr11	59142855	59142969	ENSG00000166801.15|FAM111A|pc|chr11:59142855:59142969:+	0	+
#Deleted in new
chr11	59142856	59142969	ENSG00000166801.15|FAM111A|pc|chr11:59142856:59142969:+	0	+
#Deleted in new
chr11	59142858	59142969	ENSG00000166801.15|FAM111A|pc|chr11:59142858:59142969:+	0	+
#Deleted in new
chr11	59142870	59143015	ENSG00000245571.6|AP001258.1|lncRNA|chr11:59142870:59143015:-	0	-
#Deleted in new
chr11	59143082	59143304	ENSG00000166801.15|FAM111A|pc|chr11:59143082:59143304:+	0	+
#Deleted in new
chr1	159147009	159147096	ENSG00000163568.14|AIM2|pc|chr1:159147009:159147096:-	0	-
#Deleted in new
chr11	59268875	59271608	ENSG00000214797.3|AP002358.1|lncRNA|chr11:59268875:59271608:-	0	-
#Deleted in new
chr1	159346165	159346689	ENSG00000228560.1|AL513323.1|lncRNA|chr1:159346165:159346689:-	0	-
#Deleted in new
chr1	159361773	159361899	ENSG00000228560.1|AL513323.1|lncRNA|chr1:159361773:159361899:-	0	-
#Partially deleted in new
chr11	59364445	59371714	ENSG00000176495.3|OR5AN1|pc|chr11:59364445:59371714:+	0	+
#Deleted in new
chr11	5937400	5937505	ENSG00000132256.18|TRIM5|pc|chr11:5937400:5937505:-	0	-
#Deleted in new
chr11	5938359	5938619	ENSG00000132256.18|TRIM5|pc|chr11:5938359:5938619:-	0	-
#Deleted in new
chr11	5938750	5938987	ENSG00000184478.7|OR56A3|pc|chr11:5938750:5938987:+	0	+
#Split in new
chr11	59416968	59423381	ENSG00000172324.5|OR5A2|pc|chr11:59416968:59423381:-	0	-
#Split in new
chr11	59416968	59426412	ENSG00000172324.5|OR5A2|pc|chr11:59416968:59426412:-	0	-
#Partially deleted in new
chr1	159466320	159466623	ENSG00000224943.1|AL663023.1|lncRNA|chr1:159466320:159466623:+	0	+
#Partially deleted in new
chr1	159468841	159469068	ENSG00000228560.1|AL513323.1|lncRNA|chr1:159468841:159469068:-	0	-
#Partially deleted in new
chr1	15947156	15947292	ENSG00000116809.11|ZBTB17|pc|chr1:15947156:15947292:-	0	-
#Partially deleted in new
chr11	5947310	5951347	ENSG00000184478.7|OR56A3|pc|chr11:5947310:5951347:+	0	+
#Deleted in new
chr11	5948686	5951347	ENSG00000184478.7|OR56A3|pc|chr11:5948686:5951347:+	0	+
#Deleted in new
chr11	59514672	59514766	ENSG00000172742.5|OR4D9|pc|chr11:59514672:59514766:+	0	+
#Deleted in new
chr11	59514675	59514766	ENSG00000172742.5|OR4D9|pc|chr11:59514675:59514766:+	0	+
#Split in new
chr11	59514882	59520703	ENSG00000172742.5|OR4D9|pc|chr11:59514882:59520703:+	0	+
#Deleted in new
chr1	15952909	15952973	ENSG00000116809.11|ZBTB17|pc|chr1:15952909:15952973:-	0	-
#Deleted in new
chr11	59562518	59562584	ENSG00000255008.2|AP000442.1|lncRNA|chr11:59562518:59562584:-	0	-
#Deleted in new
chr11	59563813	59563906	ENSG00000255008.2|AP000442.1|lncRNA|chr11:59563813:59563906:-	0	-
#Deleted in new
chr11	59565014	59565100	ENSG00000255008.2|AP000442.1|lncRNA|chr11:59565014:59565100:-	0	-
#Deleted in new
chr11	59565452	59565568	ENSG00000255008.2|AP000442.1|lncRNA|chr11:59565452:59565568:-	0	-
#Deleted in new
chr11	59565764	59566074	ENSG00000255008.2|AP000442.1|lncRNA|chr11:59565764:59566074:-	0	-
#Deleted in new
chr11	59620413	59620472	ENSG00000255139.1|AP000442.2|lncRNA|chr11:59620413:59620472:+	0	+
#Deleted in new
chr11	59620414	59620472	ENSG00000255139.1|AP000442.2|lncRNA|chr11:59620414:59620472:+	0	+
#Deleted in new
chr11	59635419	59635532	ENSG00000255139.1|AP000442.2|lncRNA|chr11:59635419:59635532:+	0	+
#Partially deleted in new
chr11	59639319	59639861	ENSG00000255139.1|AP000442.2|lncRNA|chr11:59639319:59639861:+	0	+
#Deleted in new
chr11	59674935	59674973	ENSG00000255355.1|AP000640.2|lncRNA|chr11:59674935:59674973:+	0	+
#Deleted in new
chr11	59675396	59675795	ENSG00000255355.1|AP000640.2|lncRNA|chr11:59675396:59675795:+	0	+
#Deleted in new
chr11	59675396	59676041	ENSG00000255355.1|AP000640.2|lncRNA|chr11:59675396:59676041:+	0	+
#Partially deleted in new
chr1	159712290	159712794	ENSG00000132693.12|CRP|pc|chr1:159712290:159712794:-	0	-
#Partially deleted in new
chr1	159712292	159712794	ENSG00000132693.12|CRP|pc|chr1:159712292:159712794:-	0	-
#Deleted in new
chr1	159712409	159712794	ENSG00000132693.12|CRP|pc|chr1:159712409:159712794:-	0	-
#Deleted in new
chr1	159712503	159712580	ENSG00000132693.12|CRP|pc|chr1:159712503:159712580:-	0	-
#Deleted in new
chr1	159712534	159712794	ENSG00000132693.12|CRP|pc|chr1:159712534:159712794:-	0	-
#Deleted in new
chr1	159712562	159712794	ENSG00000132693.12|CRP|pc|chr1:159712562:159712794:-	0	-
#Partially deleted in new
chr11	59753014	59753197	ENSG00000254477.1|AP000640.1|lncRNA|chr11:59753014:59753197:-	0	-
#Deleted in new
chr1	159806595	159806616	ENSG00000181036.13|FCRL6|pc|chr1:159806595:159806616:+	0	+
#Partially deleted in new
chr11	59808732	59808872	ENSG00000166902.4|MRPL16|pc|chr11:59808732:59808872:-	0	-
#Deleted in new
chr11	59810239	59810300	ENSG00000166902.4|MRPL16|pc|chr11:59810239:59810300:-	0	-
#Deleted in new
chr1	159813488	159813554	ENSG00000181036.13|FCRL6|pc|chr1:159813488:159813554:+	0	+
#Deleted in new
chr1	159814220	159814292	ENSG00000181036.13|FCRL6|pc|chr1:159814220:159814292:+	0	+
#Deleted in new
chr11	59861526	59861679	ENSG00000134827.7|TCN1|pc|chr11:59861526:59861679:-	0	-
#Deleted in new
chr11	59861526	59861682	ENSG00000134827.7|TCN1|pc|chr11:59861526:59861682:-	0	-
#Deleted in new
chr11	59862581	59862635	ENSG00000134827.7|TCN1|pc|chr11:59862581:59862635:-	0	-
#Deleted in new
chr11	59862581	59862722	ENSG00000134827.7|TCN1|pc|chr11:59862581:59862722:-	0	-
#Deleted in new
chr11	59863906	59864086	ENSG00000134827.7|TCN1|pc|chr11:59863906:59864086:-	0	-
#Deleted in new
chr1	159976643	159977112	ENSG00000224259.6|LINC01133|lncRNA|chr1:159976643:159977112:+	0	+
#Partially deleted in new
chr1	159978599	159979061	ENSG00000224259.6|LINC01133|lncRNA|chr1:159978599:159979061:+	0	+
#Deleted in new
chr1	159980561	159980636	ENSG00000224259.6|LINC01133|lncRNA|chr1:159980561:159980636:+	0	+
#Partially deleted in new
chr1	159998650	159999494	ENSG00000177807.8|KCNJ10|pc|chr1:159998650:159999494:-	0	-
#Partially deleted in new
chr1	159998840	159999494	ENSG00000177807.8|KCNJ10|pc|chr1:159998840:159999494:-	0	-
#Partially deleted in new
chr1	160044755	160044821	ENSG00000177807.8|KCNJ10|pc|chr1:160044755:160044821:-	0	-
#Partially deleted in new
chr11	60046713	60046891	ENSG00000149507.6|OOSP2|pc|chr11:60046713:60046891:+	0	+
#Deleted in new
chr11	60061489	60061498	ENSG00000149516.13|MS4A3|pc|chr11:60061489:60061498:+	0	+
#Deleted in new
chr11	60061489	60061554	ENSG00000149516.13|MS4A3|pc|chr11:60061489:60061554:+	0	+
#Deleted in new
chr11	6006248	6006403	ENSG00000183389.5|OR56A4|pc|chr11:6006248:6006403:-	0	-
#Deleted in new
chr1	160063488	160063589	ENSG00000225279.1|AL121987.1|lncRNA|chr1:160063488:160063589:+	0	+
#Partially deleted in new
chr1	160098798	160098828	ENSG00000162729.13|IGSF8|pc|chr1:160098798:160098828:-	0	-
#Deleted in new
chr11	60159686	60159869	ENSG00000254952.1|AP001257.1|lncRNA|chr11:60159686:60159869:-	0	-
#Deleted in new
chr11	60160278	60160382	ENSG00000254952.1|AP001257.1|lncRNA|chr11:60160278:60160382:-	0	-
#Deleted in new
chr11	60160724	60160822	ENSG00000254952.1|AP001257.1|lncRNA|chr11:60160724:60160822:-	0	-
#Partially deleted in new
chr11	60177018	60177415	ENSG00000110077.14|MS4A6A|pc|chr11:60177018:60177415:-	0	-
#Deleted in new
chr1	160182691	160182814	ENSG00000132681.16|ATP1A4|pc|chr1:160182691:160182814:+	0	+
#Deleted in new
chr1	160182691	160183428	ENSG00000132681.16|ATP1A4|pc|chr1:160182691:160183428:+	0	+
#Split in new
chr11	6019335	6027726	ENSG00000180934.6|OR56A1|pc|chr11:6019335:6027726:-	0	-
#Deleted in new
chr1	160198209	160198324	ENSG00000143318.12|CASQ1|pc|chr1:160198209:160198324:+	0	+
#Partially deleted in new
chr1	16020035	16020233	ENSG00000186510.11|CLCNKA|pc|chr1:16020035:16020233:+	0	+
#Deleted in new
chr11	60201252	60201879	ENSG00000214787.9|MS4A4E|pc|chr11:60201252:60201879:-	0	-
#Deleted in new
chr1	16021029	16021094	ENSG00000186510.11|CLCNKA|pc|chr1:16021029:16021094:+	0	+
#Deleted in new
chr1	16021030	16021094	ENSG00000186510.11|CLCNKA|pc|chr1:16021030:16021094:+	0	+
#Split in new
chr11	6021685	6027726	ENSG00000180934.6|OR56A1|pc|chr11:6021685:6027726:-	0	-
#Deleted in new
chr11	60228593	60228627	ENSG00000214787.9|MS4A4E|pc|chr11:60228593:60228627:-	0	-
#Deleted in new
chr1	160263264	160263462	ENSG00000258465.6|AL139011.2|pc|chr1:160263264:160263462:-	0	-
#Deleted in new
chr1	160281185	160281295	ENSG00000162735.18|PEX19|pc|chr1:160281185:160281295:-	0	-
#Deleted in new
chr1	160286284	160286348	ENSG00000162735.18|PEX19|pc|chr1:160286284:160286348:-	0	-
#Deleted in new
chr11	60290048	60290242	ENSG00000110079.16|MS4A4A|pc|chr11:60290048:60290242:+	0	+
#Deleted in new
chr11	6030701	6030758	ENSG00000180934.6|OR56A1|pc|chr11:6030701:6030758:-	0	-
#Deleted in new
chr11	6034283	6034338	ENSG00000180934.6|OR56A1|pc|chr11:6034283:6034338:-	0	-
#Deleted in new
chr11	60404545	60404666	ENSG00000166928.10|MS4A14|pc|chr11:60404545:60404666:+	0	+
#Deleted in new
chr11	60435406	60435515	ENSG00000166930.6|MS4A5|pc|chr11:60435406:60435515:+	0	+
#Deleted in new
chr1	160537072	160537187	ENSG00000234425.1|AL138930.1|lncRNA|chr1:160537072:160537187:+	0	+
#Deleted in new
chr11	60542518	60542621	ENSG00000204979.7|MS4A13|pc|chr11:60542518:60542621:+	0	+
#Deleted in new
chr11	60542518	60542721	ENSG00000204979.7|MS4A13|pc|chr11:60542518:60542721:+	0	+
#Deleted in new
chr1	160552704	160552737	ENSG00000066294.14|CD84|pc|chr1:160552704:160552737:-	0	-
#Deleted in new
chr1	160570938	160571458	ENSG00000234425.1|AL138930.1|lncRNA|chr1:160570938:160571458:+	0	+
#Deleted in new
chr11	60621020	60621118	ENSG00000181995.11|LINC00301|lncRNA|chr11:60621020:60621118:+	0	+
#Deleted in new
chr11	60628288	60628408	ENSG00000181995.11|LINC00301|lncRNA|chr11:60628288:60628408:+	0	+
#Deleted in new
chr11	60649167	60649310	ENSG00000181995.11|LINC00301|lncRNA|chr11:60649167:60649310:+	0	+
#Deleted in new
chr1	160673011	160673654	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160673011:160673654:+	0	+
#Deleted in new
chr1	160673521	160673654	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160673521:160673654:+	0	+
#Deleted in new
chr1	160678323	160678520	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160678323:160678520:+	0	+
#Deleted in new
chr1	160683598	160683695	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160683598:160683695:+	0	+
#Deleted in new
chr1	160683598	160683785	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160683598:160683785:+	0	+
#Deleted in new
chr1	160683598	160683908	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160683598:160683908:+	0	+
#Deleted in new
chr1	160683598	160684067	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160683598:160684067:+	0	+
#Deleted in new
chr1	160683598	160684314	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160683598:160684314:+	0	+
#Deleted in new
chr1	160686608	160686692	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160686608:160686692:+	0	+
#Deleted in new
chr1	160686608	160686693	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160686608:160686693:+	0	+
#Deleted in new
chr1	160691694	160692240	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160691694:160692240:+	0	+
#Deleted in new
chr1	160698954	160699028	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160698954:160699028:+	0	+
#Deleted in new
chr1	160698954	160699205	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160698954:160699205:+	0	+
#Deleted in new
chr1	160698954	160699285	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160698954:160699285:+	0	+
#Deleted in new
chr1	160698954	160699310	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160698954:160699310:+	0	+
#Deleted in new
chr1	160698954	160699761	ENSG00000228863.8|AL121985.1|lncRNA|chr1:160698954:160699761:+	0	+
#Deleted in new
chr11	60711829	60712027	ENSG00000166959.7|MS4A8|pc|chr11:60711829:60712027:+	0	+
#Deleted in new
chr11	60756952	60757058	ENSG00000166961.14|MS4A15|pc|chr11:60756952:60757058:+	0	+
#Deleted in new
chr11	60757002	60757058	ENSG00000166961.14|MS4A15|pc|chr11:60757002:60757058:+	0	+
#Deleted in new
chr11	60757003	60757058	ENSG00000166961.14|MS4A15|pc|chr11:60757003:60757058:+	0	+
#Deleted in new
chr11	60757007	60757058	ENSG00000166961.14|MS4A15|pc|chr11:60757007:60757058:+	0	+
#Deleted in new
chr1	160797109	160797275	ENSG00000122224.17|LY9|pc|chr1:160797109:160797275:+	0	+
#Partially deleted in new
chr11	60799827	60801305	ENSG00000172689.1|MS4A10|pc|chr11:60799827:60801305:+	0	+
#Deleted in new
chr11	60813931	60814120	ENSG00000255845.1|AP000777.1|lncRNA|chr11:60813931:60814120:-	0	-
#Deleted in new
chr11	60821273	60821396	ENSG00000255845.1|AP000777.1|lncRNA|chr11:60821273:60821396:-	0	-
#Deleted in new
chr11	60821696	60821739	ENSG00000255845.1|AP000777.1|lncRNA|chr11:60821696:60821739:-	0	-
#Deleted in new
chr11	60847472	60847623	ENSG00000110104.11|CCDC86|pc|chr11:60847472:60847623:+	0	+
#Deleted in new
chr1	160885060	160885170	ENSG00000179914.4|ITLN1|pc|chr1:160885060:160885170:-	0	-
#Deleted in new
chr11	60909426	60909742	ENSG00000257052.1|AP003721.4|lncRNA|chr11:60909426:60909742:+	0	+
#Deleted in new
chr11	60913165	60913477	ENSG00000256944.1|AP003721.3|lncRNA|chr11:60913165:60913477:-	0	-
#Deleted in new
chr1	160931738	160932177	ENSG00000232188.1|AL354714.4|lncRNA|chr1:160931738:160932177:-	0	-
#Deleted in new
chr1	160932464	160932591	ENSG00000198358.4|AL354714.1|lncRNA|chr1:160932464:160932591:+	0	+
#Deleted in new
chr1	160932916	160933326	ENSG00000198358.4|AL354714.1|lncRNA|chr1:160932916:160933326:+	0	+
#Deleted in new
chr11	60933996	60934205	ENSG00000006118.14|TMEM132A|pc|chr11:60933996:60934205:+	0	+
#Deleted in new
chr1	160934244	160934380	ENSG00000232188.1|AL354714.4|lncRNA|chr1:160934244:160934380:-	0	-
#Deleted in new
chr1	160934309	160934401	ENSG00000198358.4|AL354714.1|lncRNA|chr1:160934309:160934401:+	0	+
#Deleted in new
chr1	160944857	160944958	ENSG00000198358.4|AL354714.1|lncRNA|chr1:160944857:160944958:+	0	+
#Partially deleted in new
chr1	160948650	160949922	ENSG00000198358.4|AL354714.1|lncRNA|chr1:160948650:160949922:+	0	+
#Deleted in new
chr1	160954726	160954799	ENSG00000158764.6|ITLN2|pc|chr1:160954726:160954799:-	0	-
#Deleted in new
chr11	60989271	60989392	ENSG00000013725.14|CD6|pc|chr11:60989271:60989392:+	0	+
#Partially deleted in new
chr1	160995210	160998906	ENSG00000158769.17|F11R|pc|chr1:160995210:160998906:-	0	-
#Deleted in new
chr1	161022749	161022827	ENSG00000270149.5|AL591806.3|pc|chr1:161022749:161022827:-	0	-
#Deleted in new
chr1	161060155	161060262	ENSG00000186517.13|ARHGAP30|pc|chr1:161060155:161060262:-	0	-
#Deleted in new
chr11	61067430	61067535	ENSG00000256733.1|AP003721.2|lncRNA|chr11:61067430:61067535:+	0	+
#Deleted in new
chr11	6110263	6110348	ENSG00000254444.1|AC022762.1|lncRNA|chr11:6110263:6110348:-	0	-
#Split in new
chr11	61143379	61145464	ENSG00000279549.1|AP000437.1|lncRNA|chr11:61143379:61145464:-	0	-
#Deleted in new
chr1	161152775	161152991	ENSG00000143222.11|UFC1|pc|chr1:161152775:161152991:+	0	+
#Deleted in new
chr1	161153353	161153457	ENSG00000143222.11|UFC1|pc|chr1:161153353:161153457:+	0	+
#Deleted in new
chr1	161167609	161167707	ENSG00000143224.17|PPOX|pc|chr1:161167609:161167707:+	0	+
#Partially deleted in new
chr11	61203306	61204269	ENSG00000229859.9|PGA3|pc|chr11:61203306:61204269:+	0	+
#Deleted in new
chr1	161203786	161203837	ENSG00000158864.12|NDUFS2|pc|chr1:161203786:161203837:+	0	+
#Partially deleted in new
chr11	61204106	61204739	ENSG00000229859.9|PGA3|pc|chr11:61204106:61204739:+	0	+
#Partially deleted in new
chr11	61205679	61206627	ENSG00000229859.9|PGA3|pc|chr11:61205679:61206627:+	0	+
#Partially deleted in new
chr1	161212591	161212654	ENSG00000158864.12|NDUFS2|pc|chr1:161212591:161212654:+	0	+
#Deleted in new
chr11	61222215	61222456	ENSG00000229183.8|PGA4|pc|chr11:61222215:61222456:+	0	+
#Deleted in new
chr11	61222350	61222456	ENSG00000229183.8|PGA4|pc|chr11:61222350:61222456:+	0	+
#Split in new
chr11	61228376	61231694	ENSG00000229183.8|PGA4|pc|chr11:61228376:61231694:+	0	+
#Duplicated in new
chr11	61231381	61231668	ENSG00000229183.8|PGA4|pc|chr11:61231381:61231668:+	0	+
#Split in new
chr11	61231381	61231927	ENSG00000229183.8|PGA4|pc|chr11:61231381:61231927:+	0	+
#Deleted in new
chr11	61241041	61241282	ENSG00000256713.7|PGA5|pc|chr11:61241041:61241282:+	0	+
#Deleted in new
chr11	61241176	61241282	ENSG00000256713.7|PGA5|pc|chr11:61241176:61241282:+	0	+
#Deleted in new
chr11	61245151	61245270	ENSG00000256713.7|PGA5|pc|chr11:61245151:61245270:+	0	+
#Deleted in new
chr11	61245151	61245519	ENSG00000256713.7|PGA5|pc|chr11:61245151:61245519:+	0	+
#Partially deleted in new
chr11	61249332	61249813	ENSG00000256713.7|PGA5|pc|chr11:61249332:61249813:+	0	+
#Partially deleted in new
chr11	61315331	61315523	ENSG00000167986.13|DDB1|pc|chr11:61315331:61315523:-	0	-
#Deleted in new
chr1	161326650	161326768	ENSG00000143252.14|SDHC|pc|chr1:161326650:161326768:+	0	+
#Deleted in new
chr11	61327510	61327551	ENSG00000167986.13|DDB1|pc|chr11:61327510:61327551:-	0	-
#Partially deleted in new
chr11	61335839	61335937	ENSG00000149476.15|TKFC|pc|chr11:61335839:61335937:+	0	+
#Deleted in new
chr1	161339561	161339588	ENSG00000143252.14|SDHC|pc|chr1:161339561:161339588:+	0	+
#Deleted in new
chr1	161340593	161340655	ENSG00000143252.14|SDHC|pc|chr1:161340593:161340655:+	0	+
#Deleted in new
chr11	61356014	61356088	ENSG00000162144.9|CYB561A3|pc|chr11:61356014:61356088:-	0	-
#Deleted in new
chr11	61368251	61368283	ENSG00000149483.11|TMEM138|pc|chr11:61368251:61368283:+	0	+
#Deleted in new
chr1	161371295	161371964	ENSG00000143252.14|SDHC|pc|chr1:161371295:161371964:+	0	+
#Partially deleted in new
chr1	1613757	1615795	ENSG00000272106.1|AL691432.2|lncRNA|chr1:1613757:1615795:-	0	-
#Deleted in new
chr1	161399408	161399912	ENSG00000283696.1|AL592295.4|lncRNA|chr1:161399408:161399912:+	0	+
#Deleted in new
chr1	161403408	161403626	ENSG00000283360.1|AL592295.3|lncRNA|chr1:161403408:161403626:-	0	-
#Deleted in new
chr1	161419668	161419888	ENSG00000283360.1|AL592295.3|lncRNA|chr1:161419668:161419888:-	0	-
#Deleted in new
chr1	161420222	161420399	ENSG00000283360.1|AL592295.3|lncRNA|chr1:161420222:161420399:-	0	-
#Deleted in new
chr1	161421931	161422424	ENSG00000283696.1|AL592295.4|lncRNA|chr1:161421931:161422424:+	0	+
#Partially deleted in new
chr11	61426447	61427325	ENSG00000279632.1|AP003108.4|lncRNA|chr11:61426447:61427325:-	0	-
#Deleted in new
chr1	161427825	161428019	ENSG00000283360.1|AL592295.3|lncRNA|chr1:161427825:161428019:-	0	-
#Split in new
chr11	61430123	61436135	ENSG00000256591.5|AP003108.2|pc|chr11:61430123:61436135:+	0	+
#Deleted in new
chr1	161433443	161433895	ENSG00000283317.1|AL831711.1|lncRNA|chr1:161433443:161433895:-	0	-
#Deleted in new
chr11	61436760	61436960	ENSG00000167985.6|SDHAF2|pc|chr11:61436760:61436960:+	0	+
#Partially deleted in new
chr11	61438244	61438342	ENSG00000167985.6|SDHAF2|pc|chr11:61438244:61438342:+	0	+
#Partially deleted in new
chr11	61438294	61438342	ENSG00000167985.6|SDHAF2|pc|chr11:61438294:61438342:+	0	+
#Deleted in new
chr1	161440879	161440996	ENSG00000283317.1|AL831711.1|lncRNA|chr1:161440879:161440996:-	0	-
#Deleted in new
chr11	61468663	61468714	ENSG00000256591.5|AP003108.2|pc|chr11:61468663:61468714:+	0	+
#Deleted in new
chr11	61468663	61468716	ENSG00000256591.5|AP003108.2|pc|chr11:61468663:61468716:+	0	+
#Deleted in new
chr1	161470469	161470523	ENSG00000283360.1|AL592295.3|lncRNA|chr1:161470469:161470523:-	0	-
#Deleted in new
chr11	61488841	61488962	ENSG00000162148.10|PPP1R32|pc|chr11:61488841:61488962:+	0	+
#Duplicated in new
chr1	161509819	161510350	ENSG00000143226.13|FCGR2A|pc|chr1:161509819:161510350:+	0	+
#Deleted in new
chr1	161514619	161514874	ENSG00000143226.13|FCGR2A|pc|chr1:161514619:161514874:+	0	+
#Deleted in new
chr1	161517974	161518137	ENSG00000143226.13|FCGR2A|pc|chr1:161517974:161518137:+	0	+
#Deleted in new
chr1	161517974	161518137	ENSG00000273112.1|AL590385.2|lncRNA|chr1:161517974:161518137:+	0	+
#Deleted in new
chr1	161517974	161518355	ENSG00000143226.13|FCGR2A|pc|chr1:161517974:161518355:+	0	+
#Deleted in new
chr1	161517974	161518558	ENSG00000143226.13|FCGR2A|pc|chr1:161517974:161518558:+	0	+
#Deleted in new
chr1	161517974	161518565	ENSG00000143226.13|FCGR2A|pc|chr1:161517974:161518565:+	0	+
#Deleted in new
chr1	161517974	161518590	ENSG00000143226.13|FCGR2A|pc|chr1:161517974:161518590:+	0	+
#Deleted in new
chr1	161517974	161518603	ENSG00000143226.13|FCGR2A|pc|chr1:161517974:161518603:+	0	+
#Deleted in new
chr1	161522794	161523099	ENSG00000143226.13|FCGR2A|pc|chr1:161522794:161523099:+	0	+
#Deleted in new
chr1	161523289	161524013	ENSG00000143226.13|FCGR2A|pc|chr1:161523289:161524013:+	0	+
#Partially deleted in new
chr1	1615414	1615633	ENSG00000197530.12|MIB2|pc|chr1:1615414:1615633:+	0	+
#Partially deleted in new
chr1	1615420	1615633	ENSG00000197530.12|MIB2|pc|chr1:1615420:1615633:+	0	+
#Partially deleted in new
chr1	1615436	1615633	ENSG00000197530.12|MIB2|pc|chr1:1615436:1615633:+	0	+
#Deleted in new
chr1	1615442	1615633	ENSG00000197530.12|MIB2|pc|chr1:1615442:1615633:+	0	+
#Deleted in new
chr1	1615453	1615633	ENSG00000197530.12|MIB2|pc|chr1:1615453:1615633:+	0	+
#Deleted in new
chr1	1615495	1615633	ENSG00000197530.12|MIB2|pc|chr1:1615495:1615633:+	0	+
#Partially deleted in new
chr1	161550530	161550591	ENSG00000203747.10|FCGR3A|pc|chr1:161550530:161550591:-	0	-
#Deleted in new
chr1	1615513	1615633	ENSG00000197530.12|MIB2|pc|chr1:1615513:1615633:+	0	+
#Deleted in new
chr1	1615515	1615633	ENSG00000197530.12|MIB2|pc|chr1:1615515:1615633:+	0	+
#Deleted in new
chr1	1615529	1615633	ENSG00000197530.12|MIB2|pc|chr1:1615529:1615633:+	0	+
#Deleted in new
chr1	161556904	161557078	ENSG00000224515.1|AL590385.1|lncRNA|chr1:161556904:161557078:-	0	-
#Deleted in new
chr1	161604942	161605099	ENSG00000273112.1|AL590385.2|lncRNA|chr1:161604942:161605099:+	0	+
#Deleted in new
chr1	16161500	16161883	ENSG00000224621.1|AL451042.1|lncRNA|chr1:16161500:16161883:+	0	+
#Deleted in new
chr11	61654664	61655071	ENSG00000255947.1|AP002754.2|lncRNA|chr11:61654664:61655071:-	0	-
#Deleted in new
chr11	61655647	61655702	ENSG00000255947.1|AP002754.2|lncRNA|chr11:61655647:61655702:-	0	-
#Deleted in new
chr1	161674627	161674764	ENSG00000234211.2|AL451067.1|lncRNA|chr1:161674627:161674764:-	0	-
#Deleted in new
chr1	161674627	161674824	ENSG00000234211.2|AL451067.1|lncRNA|chr1:161674627:161674824:-	0	-
#Deleted in new
chr11	61748542	61748693	ENSG00000124915.10|DKFZP434K028|lncRNA|chr11:61748542:61748693:-	0	-
#Deleted in new
chr1	161751131	161751377	ENSG00000081721.11|DUSP12|pc|chr1:161751131:161751377:+	0	+
#Deleted in new
chr11	61811818	61811978	ENSG00000149485.18|FADS1|pc|chr11:61811818:61811978:-	0	-
#Partially deleted in new
chr11	61813454	61813568	ENSG00000149485.18|FADS1|pc|chr11:61813454:61813568:-	0	-
#Deleted in new
chr11	61813502	61813568	ENSG00000149485.18|FADS1|pc|chr11:61813502:61813568:-	0	-
#Deleted in new
chr11	61814141	61814649	ENSG00000149485.18|FADS1|pc|chr11:61814141:61814649:-	0	-
#Partially deleted in new
chr11	61816402	61816426	ENSG00000134824.13|FADS2|pc|chr11:61816402:61816426:+	0	+
#Deleted in new
chr11	61816416	61816461	ENSG00000149485.18|FADS1|pc|chr11:61816416:61816461:-	0	-
#Partially deleted in new
chr11	61816991	61817197	ENSG00000149485.18|FADS1|pc|chr11:61816991:61817197:-	0	-
#Deleted in new
chr11	61821380	61821468	ENSG00000134824.13|FADS2|pc|chr11:61821380:61821468:+	0	+
#Partially deleted in new
chr11	61846590	61848284	ENSG00000134824.13|FADS2|pc|chr11:61846590:61848284:+	0	+
#Deleted in new
chr11	61849748	61849800	ENSG00000134824.13|FADS2|pc|chr11:61849748:61849800:+	0	+
#Deleted in new
chr11	6185290	6185576	ENSG00000254444.1|AC022762.1|lncRNA|chr11:6185290:6185576:-	0	-
#Partially deleted in new
chr11	61955342	61955387	ENSG00000167995.15|BEST1|pc|chr11:61955342:61955387:+	0	+
#Deleted in new
chr1	16197853	16198216	ENSG00000234166.1|ARHGEF19-AS1|lncRNA|chr1:16197853:16198216:+	0	+
#Partially deleted in new
chr1	16197853	16198744	ENSG00000142632.16|ARHGEF19|pc|chr1:16197853:16198744:-	0	-
#Partially deleted in new
chr1	16198103	16198744	ENSG00000142632.16|ARHGEF19|pc|chr1:16198103:16198744:-	0	-
#Deleted in new
chr1	16198281	16198357	ENSG00000234166.1|ARHGEF19-AS1|lncRNA|chr1:16198281:16198357:+	0	+
#Deleted in new
chr1	162039015	162039243	ENSG00000227818.1|AL590408.1|lncRNA|chr1:162039015:162039243:+	0	+
#Deleted in new
chr1	162039342	162039567	ENSG00000227818.1|AL590408.1|lncRNA|chr1:162039342:162039567:+	0	+
#Deleted in new
chr11	62077276	62077493	ENSG00000255553.1|AP003733.3|lncRNA|chr11:62077276:62077493:-	0	-
#Deleted in new
chr11	62081613	62082184	ENSG00000255553.1|AP003733.3|lncRNA|chr11:62081613:62082184:-	0	-
#Deleted in new
chr11	62208667	62208786	ENSG00000124939.5|SCGB2A1|pc|chr11:62208667:62208786:+	0	+
#Deleted in new
chr11	62210412	62210600	ENSG00000124939.5|SCGB2A1|pc|chr11:62210412:62210600:+	0	+
#Deleted in new
chr11	62213426	62213626	ENSG00000254404.1|AP003306.1|lncRNA|chr11:62213426:62213626:-	0	-
#Deleted in new
chr11	62213725	62213939	ENSG00000124939.5|SCGB2A1|pc|chr11:62213725:62213939:+	0	+
#Deleted in new
chr11	62214475	62214576	ENSG00000254404.1|AP003306.1|lncRNA|chr11:62214475:62214576:-	0	-
#Deleted in new
chr11	62242209	62242362	ENSG00000124935.3|SCGB1D2|pc|chr11:62242209:62242362:+	0	+
#Deleted in new
chr11	62260497	62260549	ENSG00000254404.1|AP003306.1|lncRNA|chr11:62260497:62260549:-	0	-
#Split in new
chr11	62270880	62272071	ENSG00000110484.6|SCGB2A2|pc|chr11:62270880:62272071:+	0	+
#Partially deleted in new
chr1	1623121	1623482	ENSG00000197530.12|MIB2|pc|chr1:1623121:1623482:+	0	+
#Deleted in new
chr11	62336910	62337215	ENSG00000255118.1|AP003306.2|lncRNA|chr11:62336910:62337215:-	0	-
#Deleted in new
chr11	62381796	62383247	ENSG00000162174.12|ASRGL1|pc|chr11:62381796:62383247:+	0	+
#Partially deleted in new
chr11	62391896	62391934	ENSG00000162174.12|ASRGL1|pc|chr11:62391896:62391934:+	0	+
#Deleted in new
chr11	62405102	62405169	ENSG00000149021.6|SCGB1A1|pc|chr11:62405102:62405169:+	0	+
#Deleted in new
chr11	62416563	62416637	ENSG00000149021.6|SCGB1A1|pc|chr11:62416563:62416637:+	0	+
#Deleted in new
chr1	162497250	162497296	ENSG00000152332.15|UHMK1|pc|chr1:162497250:162497296:+	0	+
#Deleted in new
chr11	62537311	62537466	ENSG00000250659.2|AP001363.1|lncRNA|chr11:62537311:62537466:+	0	+
#Deleted in new
chr11	62541909	62542018	ENSG00000250659.2|AP001363.1|lncRNA|chr11:62541909:62542018:+	0	+
#Deleted in new
chr11	62582470	62582592	ENSG00000149016.15|TUT1|pc|chr11:62582470:62582592:-	0	-
#Deleted in new
chr1	162593658	162593754	ENSG00000272574.1|AL596325.2|lncRNA|chr1:162593658:162593754:+	0	+
#Deleted in new
chr11	62616066	62616240	ENSG00000149541.9|B3GAT3|pc|chr11:62616066:62616240:-	0	-
#Partially deleted in new
chr11	6264473	6264633	ENSG00000110148.9|CCKBR|pc|chr11:6264473:6264633:+	0	+
#Partially deleted in new
chr11	62665646	62668496	ENSG00000214756.7|METTL12|pc|chr11:62665646:62668496:+	0	+
#Partially deleted in new
chr11	62666353	62667397	ENSG00000214756.7|METTL12|pc|chr11:62666353:62667397:+	0	+
#Partially deleted in new
chr11	62666395	62668108	ENSG00000214756.7|METTL12|pc|chr11:62666395:62668108:+	0	+
#Deleted in new
chr11	62671239	62671388	ENSG00000162194.12|LBHD1|pc|chr11:62671239:62671388:-	0	-
#Deleted in new
chr11	62671239	62671540	ENSG00000162194.12|LBHD1|pc|chr11:62671239:62671540:-	0	-
#Partially deleted in new
chr11	62671563	62671614	ENSG00000162194.12|LBHD1|pc|chr11:62671563:62671614:-	0	-
#Deleted in new
chr11	62697482	62697566	ENSG00000168000.14|BSCL2|pc|chr11:62697482:62697566:-	0	-
#Partially deleted in new
chr11	62735381	62736243	ENSG00000162222.13|TTC9C|pc|chr11:62735381:62736243:+	0	+
#Partially deleted in new
chr11	62748318	62748688	ENSG00000185670.7|ZBTB3|pc|chr11:62748318:62748688:-	0	-
#Partially deleted in new
chr11	62762541	62762742	ENSG00000168002.11|POLR2G|pc|chr11:62762541:62762742:+	0	+
#Deleted in new
chr11	62774594	62774665	ENSG00000168569.7|TMEM223|pc|chr11:62774594:62774665:-	0	-
#Partially deleted in new
chr11	62787508	62787925	ENSG00000168569.7|TMEM223|pc|chr11:62787508:62787925:-	0	-
#Deleted in new
chr11	62796941	62797058	ENSG00000162231.13|NXF1|pc|chr11:62796941:62797058:-	0	-
#Deleted in new
chr11	62806190	62806302	ENSG00000162231.13|NXF1|pc|chr11:62806190:62806302:-	0	-
#Deleted in new
chr11	62830357	62830520	ENSG00000162236.11|STX5|pc|chr11:62830357:62830520:-	0	-
#Partially deleted in new
chr11	62835960	62836676	ENSG00000133316.15|WDR74|pc|chr11:62835960:62836676:-	0	-
#Deleted in new
chr11	62840077	62840156	ENSG00000133316.15|WDR74|pc|chr11:62840077:62840156:-	0	-
#Deleted in new
chr11	62840077	62840380	ENSG00000133316.15|WDR74|pc|chr11:62840077:62840380:-	0	-
#Deleted in new
chr11	62841568	62841809	ENSG00000133316.15|WDR74|pc|chr11:62841568:62841809:-	0	-
#Partially deleted in new
chr1	162851315	162853161	ENSG00000185860.13|CCDC190|pc|chr1:162851315:162853161:-	0	-
#Deleted in new
chr11	62851987	62852275	ENSG00000255717.6|SNHG1|lncRNA|chr11:62851987:62852275:-	0	-
#Deleted in new
chr11	62851987	62852681	ENSG00000255717.6|SNHG1|lncRNA|chr11:62851987:62852681:-	0	-
#Deleted in new
chr11	62851988	62852681	ENSG00000255717.6|SNHG1|lncRNA|chr11:62851988:62852681:-	0	-
#Deleted in new
chr11	62851990	62852681	ENSG00000255717.6|SNHG1|lncRNA|chr11:62851990:62852681:-	0	-
#Deleted in new
chr11	62852019	62852681	ENSG00000255717.6|SNHG1|lncRNA|chr11:62852019:62852681:-	0	-
#Deleted in new
chr11	62852047	62852681	ENSG00000255717.6|SNHG1|lncRNA|chr11:62852047:62852681:-	0	-
#Deleted in new
chr11	62852251	62852681	ENSG00000255717.6|SNHG1|lncRNA|chr11:62852251:62852681:-	0	-
#Deleted in new
chr11	62852257	62852681	ENSG00000255717.6|SNHG1|lncRNA|chr11:62852257:62852681:-	0	-
#Deleted in new
chr11	62852289	62852666	ENSG00000255717.6|SNHG1|lncRNA|chr11:62852289:62852666:-	0	-
#Deleted in new
chr11	62852296	62852436	ENSG00000255717.6|SNHG1|lncRNA|chr11:62852296:62852436:-	0	-
#Deleted in new
chr11	62852608	62852681	ENSG00000255717.6|SNHG1|lncRNA|chr11:62852608:62852681:-	0	-
#Deleted in new
chr11	62852655	62852681	ENSG00000255717.6|SNHG1|lncRNA|chr11:62852655:62852681:-	0	-
#Split in new
chr11	62854079	62854551	ENSG00000255717.6|SNHG1|lncRNA|chr11:62854079:62854551:-	0	-
#Partially deleted in new
chr11	62854367	62854551	ENSG00000255717.6|SNHG1|lncRNA|chr11:62854367:62854551:-	0	-
#Deleted in new
chr1	162868652	162868761	ENSG00000185860.13|CCDC190|pc|chr1:162868652:162868761:-	0	-
#Deleted in new
chr1	162868652	162868815	ENSG00000185860.13|CCDC190|pc|chr1:162868652:162868815:-	0	-
#Deleted in new
chr11	62870744	62870837	ENSG00000168003.16|SLC3A2|pc|chr11:62870744:62870837:+	0	+
#Deleted in new
chr11	62870813	62870837	ENSG00000168003.16|SLC3A2|pc|chr11:62870813:62870837:+	0	+
#Deleted in new
chr11	62871576	62871669	ENSG00000168003.16|SLC3A2|pc|chr11:62871576:62871669:+	0	+
#Deleted in new
chr11	62876783	62876879	ENSG00000168003.16|SLC3A2|pc|chr11:62876783:62876879:+	0	+
#Deleted in new
chr11	62876786	62876879	ENSG00000168003.16|SLC3A2|pc|chr11:62876786:62876879:+	0	+
#Deleted in new
chr11	62882504	62882618	ENSG00000168003.16|SLC3A2|pc|chr11:62882504:62882618:+	0	+
#Deleted in new
chr11	62882529	62882618	ENSG00000168003.16|SLC3A2|pc|chr11:62882529:62882618:+	0	+
#Partially deleted in new
chr11	62882666	62882807	ENSG00000168003.16|SLC3A2|pc|chr11:62882666:62882807:+	0	+
#Deleted in new
chr11	62886436	62886568	ENSG00000168003.16|SLC3A2|pc|chr11:62886436:62886568:+	0	+
#Deleted in new
chr11	62886460	62886526	ENSG00000168003.16|SLC3A2|pc|chr11:62886460:62886526:+	0	+
#Partially deleted in new
chr1	163070536	163070719	ENSG00000117152.13|RGS4|pc|chr1:163070536:163070719:+	0	+
#Partially deleted in new
chr1	163072145	163072255	ENSG00000117152.13|RGS4|pc|chr1:163072145:163072255:+	0	+
#Deleted in new
chr1	163111120	163111317	ENSG00000143248.12|RGS5|pc|chr1:163111120:163111317:-	0	-
#Deleted in new
chr11	63137866	63137878	ENSG00000184999.11|SLC22A10|pc|chr11:63137866:63137878:+	0	+
#Duplicated in new
chr11	63143377	63144221	ENSG00000197658.9|SLC22A24|pc|chr11:63143377:63144221:-	0	-
#Deleted in new
chr11	63154506	63154551	ENSG00000184999.11|SLC22A10|pc|chr11:63154506:63154551:+	0	+
#Partially deleted in new
chr11	63166043	63168060	ENSG00000196600.12|SLC22A25|pc|chr11:63166043:63168060:-	0	-
#Deleted in new
chr11	63166864	63166944	ENSG00000184999.11|SLC22A10|pc|chr11:63166864:63166944:+	0	+
#Deleted in new
chr11	63167908	63168060	ENSG00000196600.12|SLC22A25|pc|chr11:63167908:63168060:-	0	-
#Deleted in new
chr11	63208130	63208285	ENSG00000184999.11|SLC22A10|pc|chr11:63208130:63208285:+	0	+
#Partially deleted in new
chr1	163217525	163217636	ENSG00000143248.12|RGS5|pc|chr1:163217525:163217636:-	0	-
#Deleted in new
chr11	63218080	63218225	ENSG00000196600.12|SLC22A25|pc|chr11:63218080:63218225:-	0	-
#Deleted in new
chr11	63219908	63220021	ENSG00000196600.12|SLC22A25|pc|chr11:63219908:63220021:-	0	-
#Deleted in new
chr11	63219914	63220043	ENSG00000184999.11|SLC22A10|pc|chr11:63219914:63220043:+	0	+
#Deleted in new
chr11	6323553	6323692	ENSG00000282556.1|AC068733.3|lncRNA|chr11:6323553:6323692:+	0	+
#Deleted in new
chr11	6323893	6324023	ENSG00000282556.1|AC068733.3|lncRNA|chr11:6323893:6324023:+	0	+
#Deleted in new
chr1	163260549	163260659	ENSG00000237756.1|AL592435.1|lncRNA|chr1:163260549:163260659:+	0	+
#Deleted in new
chr1	163266575	163266674	ENSG00000143228.12|NUF2|pc|chr1:163266575:163266674:+	0	+
#Deleted in new
chr1	163267269	163267344	ENSG00000143228.12|NUF2|pc|chr1:163267269:163267344:+	0	+
#Deleted in new
chr1	163308543	163308577	ENSG00000232995.7|RGS5|lncRNA|chr1:163308543:163308577:-	0	-
#Deleted in new
chr1	163308543	163308631	ENSG00000143248.12|RGS5|pc|chr1:163308543:163308631:-	0	-
#Deleted in new
chr1	163308543	163308631	ENSG00000232995.7|RGS5|lncRNA|chr1:163308543:163308631:-	0	-
#Deleted in new
chr11	63311006	63311101	ENSG00000184999.11|SLC22A10|pc|chr11:63311006:63311101:+	0	+
#Deleted in new
chr11	63311006	63311432	ENSG00000184999.11|SLC22A10|pc|chr11:63311006:63311432:+	0	+
#Deleted in new
chr11	63311006	63311771	ENSG00000184999.11|SLC22A10|pc|chr11:63311006:63311771:+	0	+
#Deleted in new
chr1	163318837	163319291	ENSG00000232995.7|RGS5|lncRNA|chr1:163318837:163319291:-	0	-
#Deleted in new
chr1	163319181	163319291	ENSG00000143248.12|RGS5|pc|chr1:163319181:163319291:-	0	-
#Deleted in new
chr1	163319181	163319291	ENSG00000232995.7|RGS5|lncRNA|chr1:163319181:163319291:-	0	-
#Deleted in new
chr1	163319226	163319291	ENSG00000232995.7|RGS5|lncRNA|chr1:163319226:163319291:-	0	-
#Partially deleted in new
chr1	163321621	163321704	ENSG00000232995.7|RGS5|lncRNA|chr1:163321621:163321704:-	0	-
#Partially deleted in new
chr1	163321621	163321735	ENSG00000143248.12|RGS5|pc|chr1:163321621:163321735:-	0	-
#Partially deleted in new
chr1	163321621	163321741	ENSG00000232995.7|RGS5|lncRNA|chr1:163321621:163321741:-	0	-
#Partially deleted in new
chr1	163321621	163321751	ENSG00000143248.12|RGS5|pc|chr1:163321621:163321751:-	0	-
#Partially deleted in new
chr1	163321621	163321752	ENSG00000232995.7|RGS5|lncRNA|chr1:163321621:163321752:-	0	-
#Deleted in new
chr1	163328457	163328530	ENSG00000143228.12|NUF2|pc|chr1:163328457:163328530:+	0	+
#Partially deleted in new
chr11	63409801	63410294	ENSG00000149742.9|SLC22A9|pc|chr11:63409801:63410294:+	0	+
#Deleted in new
chr1	16353299	16353423	ENSG00000055070.16|SZRD1|pc|chr1:16353299:16353423:+	0	+
#Deleted in new
chr11	63538395	63538414	ENSG00000133321.10|RARRES3|pc|chr11:63538395:63538414:+	0	+
#Deleted in new
chr11	63546148	63546325	ENSG00000133321.10|RARRES3|pc|chr11:63546148:63546325:+	0	+
#Deleted in new
chr11	63546148	63546457	ENSG00000133321.10|RARRES3|pc|chr11:63546148:63546457:+	0	+
#Deleted in new
chr11	63546148	63546462	ENSG00000133321.10|RARRES3|pc|chr11:63546148:63546462:+	0	+
#Deleted in new
chr11	63563315	63563383	ENSG00000133328.3|HRASLS2|pc|chr11:63563315:63563383:-	0	-
#Deleted in new
chr11	63598703	63598715	ENSG00000176485.11|PLA2G16|pc|chr11:63598703:63598715:-	0	-
#Deleted in new
chr11	63608453	63608581	ENSG00000176485.11|PLA2G16|pc|chr11:63608453:63608581:-	0	-
#Deleted in new
chr11	63616307	63616412	ENSG00000203520.3|AP000753.1|lncRNA|chr11:63616307:63616412:+	0	+
#Deleted in new
chr11	63616586	63616883	ENSG00000176485.11|PLA2G16|pc|chr11:63616586:63616883:-	0	-
#Partially deleted in new
chr11	6364286	6365262	ENSG00000254443.1|AC068733.1|lncRNA|chr11:6364286:6365262:+	0	+
#Deleted in new
chr11	63650559	63650747	ENSG00000256789.1|AP000753.2|lncRNA|chr11:63650559:63650747:+	0	+
#Deleted in new
chr11	63746946	63747024	ENSG00000133318.13|RTN3|pc|chr11:63746946:63747024:+	0	+
#Partially deleted in new
chr11	63822588	63823261	ENSG00000168005.8|C11orf84|pc|chr11:63822588:63823261:+	0	+
#Deleted in new
chr11	63823134	63823371	ENSG00000168005.8|C11orf84|pc|chr11:63823134:63823371:+	0	+
#Deleted in new
chr1	16387054	16387125	ENSG00000055070.16|SZRD1|pc|chr1:16387054:16387125:+	0	+
#Deleted in new
chr1	16387116	16387301	ENSG00000187144.11|SPATA21|pc|chr1:16387116:16387301:-	0	-
#Partially deleted in new
chr1	16387501	16387794	ENSG00000055070.16|SZRD1|pc|chr1:16387501:16387794:+	0	+
#Deleted in new
chr11	639056	639158	ENSG00000069696.6|DRD4|pc|chr11:639056:639158:+	0	+
#Partially deleted in new
chr11	63945839	63947003	ENSG00000110583.12|NAA40|pc|chr11:63945839:63947003:+	0	+
#Partially deleted in new
chr11	63990286	63990632	ENSG00000167770.11|OTUB1|pc|chr11:63990286:63990632:+	0	+
#Deleted in new
chr11	64082952	64083070	ENSG00000256481.1|AP006333.2|lncRNA|chr11:64082952:64083070:+	0	+
#Deleted in new
chr1	16408497	16408705	ENSG00000187144.11|SPATA21|pc|chr1:16408497:16408705:-	0	-
#Deleted in new
chr1	16410777	16410915	ENSG00000187144.11|SPATA21|pc|chr1:16410777:16410915:-	0	-
#Partially deleted in new
chr11	64202404	64202912	ENSG00000168439.16|STIP1|pc|chr11:64202404:64202912:+	0	+
#Deleted in new
chr11	64228571	64228986	ENSG00000149761.8|NUDT22|pc|chr11:64228571:64228986:+	0	+
#Deleted in new
chr1	16424903	16425210	ENSG00000187144.11|SPATA21|pc|chr1:16424903:16425210:-	0	-
#Deleted in new
chr1	16425096	16425210	ENSG00000187144.11|SPATA21|pc|chr1:16425096:16425210:-	0	-
#Deleted in new
chr11	64272718	64272856	ENSG00000002330.13|BAD|pc|chr11:64272718:64272856:-	0	-
#Deleted in new
chr11	64275687	64275759	ENSG00000173264.14|GPR137|pc|chr11:64275687:64275759:+	0	+
#Deleted in new
chr11	64276347	64276421	ENSG00000173264.14|GPR137|pc|chr11:64276347:64276421:+	0	+
#Partially deleted in new
chr11	64276760	64277043	ENSG00000002330.13|BAD|pc|chr11:64276760:64277043:-	0	-
#Deleted in new
chr11	64276903	64277043	ENSG00000002330.13|BAD|pc|chr11:64276903:64277043:-	0	-
#Deleted in new
chr11	64325049	64325331	ENSG00000236935.1|AP003774.4|lncRNA|chr11:64325049:64325331:-	0	-
#Deleted in new
chr11	64327483	64327536	ENSG00000236935.1|AP003774.4|lncRNA|chr11:64327483:64327536:-	0	-
#Deleted in new
chr11	64329167	64329504	ENSG00000236935.1|AP003774.4|lncRNA|chr11:64329167:64329504:-	0	-
#Partially deleted in new
chr11	64349550	64350695	ENSG00000168071.21|CCDC88B|pc|chr11:64349550:64350695:+	0	+
#Partially deleted in new
chr11	64349890	64350387	ENSG00000168071.21|CCDC88B|pc|chr11:64349890:64350387:+	0	+
#Deleted in new
chr1	16437127	16437190	ENSG00000187144.11|SPATA21|pc|chr1:16437127:16437190:-	0	-
#Deleted in new
chr1	16437127	16437393	ENSG00000187144.11|SPATA21|pc|chr1:16437127:16437393:-	0	-
#Deleted in new
chr1	16437127	16437416	ENSG00000187144.11|SPATA21|pc|chr1:16437127:16437416:-	0	-
#Deleted in new
chr1	16437127	16437424	ENSG00000187144.11|SPATA21|pc|chr1:16437127:16437424:-	0	-
#Deleted in new
chr11	64394341	64394699	ENSG00000231680.1|AP003774.3|lncRNA|chr11:64394341:64394699:-	0	-
#Deleted in new
chr11	64395204	64395831	ENSG00000231680.1|AP003774.3|lncRNA|chr11:64395204:64395831:-	0	-
#Deleted in new
chr11	64420390	64420622	ENSG00000231492.2|AP003774.2|lncRNA|chr11:64420390:64420622:+	0	+
#Deleted in new
chr11	64420534	64420561	ENSG00000231492.2|AP003774.2|lncRNA|chr11:64420534:64420561:+	0	+
#Deleted in new
chr11	64420731	64421057	ENSG00000231492.2|AP003774.2|lncRNA|chr11:64420731:64421057:+	0	+
#Deleted in new
chr11	6442486	6442617	ENSG00000110169.10|HPX|pc|chr11:6442486:6442617:-	0	-
#Deleted in new
chr11	64428160	64428198	ENSG00000231492.2|AP003774.2|lncRNA|chr11:64428160:64428198:+	0	+
#Deleted in new
chr11	64432303	64432368	ENSG00000231492.2|AP003774.2|lncRNA|chr11:64432303:64432368:+	0	+
#Deleted in new
chr11	64432459	64432670	ENSG00000231492.2|AP003774.2|lncRNA|chr11:64432459:64432670:+	0	+
#Deleted in new
chr11	64449073	64449652	ENSG00000181908.5|AP003774.1|lncRNA|chr11:64449073:64449652:+	0	+
#Deleted in new
chr11	64449896	64451657	ENSG00000181908.5|AP003774.1|lncRNA|chr11:64449896:64451657:+	0	+
#Deleted in new
chr11	64500852	64500914	ENSG00000232500.1|AP005273.1|lncRNA|chr11:64500852:64500914:+	0	+
#Deleted in new
chr11	64502437	64502581	ENSG00000232500.1|AP005273.1|lncRNA|chr11:64502437:64502581:+	0	+
#Deleted in new
chr11	64505070	64505386	ENSG00000232500.1|AP005273.1|lncRNA|chr11:64505070:64505386:+	0	+
#Deleted in new
chr1	1645459	1645497	ENSG00000248333.8|CDK11B|pc|chr1:1645459:1645497:-	0	-
#Deleted in new
chr1	1645459	1645508	ENSG00000248333.8|CDK11B|pc|chr1:1645459:1645508:-	0	-
#Partially deleted in new
chr1	164555583	164555719	ENSG00000185630.18|PBX1|pc|chr1:164555583:164555719:+	0	+
#Deleted in new
chr1	1645578	1645643	ENSG00000248333.8|CDK11B|pc|chr1:1645578:1645643:-	0	-
#Deleted in new
chr1	1645610	1645643	ENSG00000248333.8|CDK11B|pc|chr1:1645610:1645643:-	0	-
#Deleted in new
chr11	64564307	64564428	ENSG00000168065.15|SLC22A11|pc|chr11:64564307:64564428:+	0	+
#Deleted in new
chr11	64565221	64565337	ENSG00000168065.15|SLC22A11|pc|chr11:64565221:64565337:+	0	+
#Deleted in new
chr11	64565221	64565365	ENSG00000168065.15|SLC22A11|pc|chr11:64565221:64565365:+	0	+
#Deleted in new
chr11	64565221	64566283	ENSG00000168065.15|SLC22A11|pc|chr11:64565221:64566283:+	0	+
#Deleted in new
chr11	64565221	64566699	ENSG00000168065.15|SLC22A11|pc|chr11:64565221:64566699:+	0	+
#Deleted in new
chr11	64570978	64571527	ENSG00000168065.15|SLC22A11|pc|chr11:64570978:64571527:+	0	+
#Deleted in new
chr11	64570978	64572875	ENSG00000168065.15|SLC22A11|pc|chr11:64570978:64572875:+	0	+
#Deleted in new
chr1	1645772	1645866	ENSG00000248333.8|CDK11B|pc|chr1:1645772:1645866:-	0	-
#Deleted in new
chr1	1645772	1645884	ENSG00000248333.8|CDK11B|pc|chr1:1645772:1645884:-	0	-
#Deleted in new
chr1	1645952	1645969	ENSG00000248333.8|CDK11B|pc|chr1:1645952:1645969:-	0	-
#Deleted in new
chr1	1645997	1646048	ENSG00000248333.8|CDK11B|pc|chr1:1645997:1646048:-	0	-
#Partially deleted in new
chr11	64601487	64602348	ENSG00000197891.11|SLC22A12|pc|chr11:64601487:64602348:+	0	+
#Partially deleted in new
chr11	64601487	64602353	ENSG00000197891.11|SLC22A12|pc|chr11:64601487:64602353:+	0	+
#Deleted in new
chr1	164605192	164605419	ENSG00000185630.18|PBX1|pc|chr1:164605192:164605419:+	0	+
#Partially deleted in new
chr1	16460947	16463287	ENSG00000226029.1|LINC01772|lncRNA|chr1:16460947:16463287:+	0	+
#Deleted in new
chr1	1646110	1646178	ENSG00000248333.8|CDK11B|pc|chr1:1646110:1646178:-	0	-
#Deleted in new
chr1	1646125	1646143	ENSG00000248333.8|CDK11B|pc|chr1:1646125:1646143:-	0	-
#Deleted in new
chr11	646326	646596	ENSG00000177030.16|DEAF1|pc|chr11:646326:646596:-	0	-
#Deleted in new
chr1	16467576	16468481	ENSG00000226029.1|LINC01772|lncRNA|chr1:16467576:16468481:+	0	+
#Partially deleted in new
chr11	64747223	64748888	ENSG00000068976.13|PYGM|pc|chr11:64747223:64748888:-	0	-
#Deleted in new
chr11	64810813	64810905	ENSG00000133895.14|MEN1|pc|chr11:64810813:64810905:-	0	-
#Deleted in new
chr11	64810813	64811294	ENSG00000133895.14|MEN1|pc|chr11:64810813:64811294:-	0	-
#Deleted in new
chr11	64811033	64811294	ENSG00000133895.14|MEN1|pc|chr11:64811033:64811294:-	0	-
#Split in new
chr11	64855321	64856663	ENSG00000110047.17|EHD1|pc|chr11:64855321:64856663:-	0	-
#Deleted in new
chr1	164899187	164899296	ENSG00000185630.18|PBX1|pc|chr1:164899187:164899296:+	0	+
#Deleted in new
chr11	64918267	64918349	ENSG00000068971.13|PPP2R5B|pc|chr11:64918267:64918349:+	0	+
#Deleted in new
chr11	64922984	64923102	ENSG00000068971.13|PPP2R5B|pc|chr11:64922984:64923102:+	0	+
#Deleted in new
chr11	64960088	64960135	ENSG00000168070.11|MAJIN|pc|chr11:64960088:64960135:-	0	-
#Deleted in new
chr11	64960088	64960137	ENSG00000168070.11|MAJIN|pc|chr11:64960088:64960137:-	0	-
#Partially deleted in new
chr11	64990073	64990274	ENSG00000168062.9|BATF2|pc|chr11:64990073:64990274:-	0	-
#Partially deleted in new
chr11	64990192	64990273	ENSG00000168062.9|BATF2|pc|chr11:64990192:64990273:-	0	-
#Partially deleted in new
chr11	65035519	65038829	ENSG00000110025.12|SNX15|pc|chr11:65035519:65038829:+	0	+
#Partially deleted in new
chr11	65040900	65041106	ENSG00000168061.14|SAC3D1|pc|chr11:65040900:65041106:+	0	+
#Partially deleted in new
chr11	65040940	65041106	ENSG00000168061.14|SAC3D1|pc|chr11:65040940:65041106:+	0	+
#Deleted in new
chr11	65043024	65043164	ENSG00000168061.14|SAC3D1|pc|chr11:65043024:65043164:+	0	+
#Partially deleted in new
chr11	65066364	65066473	ENSG00000146670.9|CDCA5|pc|chr11:65066364:65066473:-	0	-
#Deleted in new
chr11	65090407	65090536	ENSG00000149823.8|VPS51|pc|chr11:65090407:65090536:+	0	+
#Deleted in new
chr11	65105407	65105440	ENSG00000149823.8|VPS51|pc|chr11:65105407:65105440:+	0	+
#Deleted in new
chr11	65107186	65107372	ENSG00000149823.8|VPS51|pc|chr11:65107186:65107372:+	0	+
#Deleted in new
chr11	65115774	65115822	ENSG00000149809.14|TM7SF2|pc|chr11:65115774:65115822:+	0	+
#Deleted in new
chr11	651161	651407	ENSG00000177030.16|DEAF1|pc|chr11:651161:651407:-	0	-
#Deleted in new
chr11	65118309	65119111	ENSG00000278952.1|AP003068.4|lncRNA|chr11:65118309:65119111:+	0	+
#Deleted in new
chr1	16514644	16515754	ENSG00000261135.1|AL137802.2|lncRNA|chr1:16514644:16515754:+	0	+
#Deleted in new
chr11	65170153	65170261	ENSG00000204710.2|SPDYC|pc|chr11:65170153:65170261:+	0	+
#Deleted in new
chr11	65171326	65171499	ENSG00000204710.2|SPDYC|pc|chr11:65171326:65171499:+	0	+
#Deleted in new
chr11	65171942	65172001	ENSG00000204710.2|SPDYC|pc|chr11:65171942:65172001:+	0	+
#Deleted in new
chr11	65177605	65177734	ENSG00000254614.2|AP003068.2|lncRNA|chr11:65177605:65177734:-	0	-
#Partially deleted in new
chr11	65180565	65180645	ENSG00000014216.15|CAPN1|pc|chr11:65180565:65180645:+	0	+
#Deleted in new
chr11	65203371	65203454	ENSG00000014216.15|CAPN1|pc|chr11:65203371:65203454:+	0	+
#Deleted in new
chr11	65203544	65203638	ENSG00000014216.15|CAPN1|pc|chr11:65203544:65203638:+	0	+
#Deleted in new
chr1	16520693	16520787	ENSG00000224174.2|AL137802.1|lncRNA|chr1:16520693:16520787:+	0	+
#Deleted in new
chr1	165207481	165207614	ENSG00000162761.14|LMX1A|pc|chr1:165207481:165207614:-	0	-
#Partially deleted in new
chr11	65208949	65209387	ENSG00000014216.15|CAPN1|pc|chr11:65208949:65209387:+	0	+
#Deleted in new
chr1	16521563	16521796	ENSG00000224174.2|AL137802.1|lncRNA|chr1:16521563:16521796:+	0	+
#Deleted in new
chr11	65305372	65305589	ENSG00000014138.8|POLA2|pc|chr11:65305372:65305589:+	0	+
#Deleted in new
chr1	16533885	16534209	ENSG00000233421.4|LINC01783|lncRNA|chr1:16533885:16534209:-	0	-
#Deleted in new
chr1	16534425	16535649	ENSG00000233421.4|LINC01783|lncRNA|chr1:16534425:16535649:-	0	-
#Deleted in new
chr1	16535341	16535776	ENSG00000233421.4|LINC01783|lncRNA|chr1:16535341:16535776:-	0	-
#Deleted in new
chr1	16535779	16536172	ENSG00000233421.4|LINC01783|lncRNA|chr1:16535779:16536172:-	0	-
#Deleted in new
chr11	65367437	65367815	ENSG00000255478.1|AP000944.1|lncRNA|chr11:65367437:65367815:+	0	+
#Deleted in new
chr11	65367926	65368043	ENSG00000255478.1|AP000944.1|lncRNA|chr11:65367926:65368043:+	0	+
#Deleted in new
chr11	65382724	65383047	ENSG00000162241.12|SLC25A45|pc|chr11:65382724:65383047:-	0	-
#Deleted in new
chr11	65383317	65383701	ENSG00000162241.12|SLC25A45|pc|chr11:65383317:65383701:-	0	-
#Deleted in new
chr1	16539065	16539575	ENSG00000268991.2|FAM231B|pc|chr1:16539065:16539575:+	0	+
#Deleted in new
chr1	165476840	165477115	ENSG00000237463.5|AL157714.2|lncRNA|chr1:165476840:165477115:-	0	-
#Deleted in new
chr1	165476841	165477115	ENSG00000237463.5|AL157714.2|lncRNA|chr1:165476841:165477115:-	0	-
#Deleted in new
chr1	165528782	165528882	ENSG00000237463.5|AL157714.2|lncRNA|chr1:165528782:165528882:-	0	-
#Deleted in new
chr1	165528782	165528884	ENSG00000237463.5|AL157714.2|lncRNA|chr1:165528782:165528884:-	0	-
#Partially deleted in new
chr11	65543426	65545770	ENSG00000168056.15|LTBP3|pc|chr11:65543426:65545770:-	0	-
#Deleted in new
chr11	65544063	65544704	ENSG00000168056.15|LTBP3|pc|chr11:65544063:65544704:-	0	-
#Deleted in new
chr11	65561483	65561607	ENSG00000279093.1|AP001362.1|lncRNA|chr11:65561483:65561607:+	0	+
#Partially deleted in new
chr11	65568481	65570423	ENSG00000260233.3|SSSCA1-AS1|lncRNA|chr11:65568481:65570423:-	0	-
#Partially deleted in new
chr1	165575282	165575369	ENSG00000237463.5|AL157714.2|lncRNA|chr1:165575282:165575369:-	0	-
#Deleted in new
chr1	165605595	165605688	ENSG00000236206.1|AL356441.1|lncRNA|chr1:165605595:165605688:+	0	+
#Deleted in new
chr1	165621517	165621607	ENSG00000236206.1|AL356441.1|lncRNA|chr1:165621517:165621607:+	0	+
#Deleted in new
chr1	16562318	16564186	ENSG00000219481.10|NBPF1|pc|chr1:16562318:16564186:-	0	-
#Deleted in new
chr1	165623244	165623331	ENSG00000236206.1|AL356441.1|lncRNA|chr1:165623244:165623331:+	0	+
#Deleted in new
chr11	65639135	65639251	ENSG00000213445.9|SIPA1|pc|chr11:65639135:65639251:+	0	+
#Deleted in new
chr1	16564017	16564186	ENSG00000219481.10|NBPF1|pc|chr1:16564017:16564186:-	0	-
#Deleted in new
chr1	16564806	16564865	ENSG00000219481.10|NBPF1|pc|chr1:16564806:16564865:-	0	-
#Deleted in new
chr1	16564806	16564918	ENSG00000219481.10|NBPF1|pc|chr1:16564806:16564918:-	0	-
#Deleted in new
chr1	16564852	16564918	ENSG00000219481.10|NBPF1|pc|chr1:16564852:16564918:-	0	-
#Deleted in new
chr1	16565632	16565805	ENSG00000219481.10|NBPF1|pc|chr1:16565632:16565805:-	0	-
#Deleted in new
chr1	16565636	16565805	ENSG00000219481.10|NBPF1|pc|chr1:16565636:16565805:-	0	-
#Partially deleted in new
chr1	165661428	165661796	ENSG00000143198.12|MGST3|pc|chr1:165661428:165661796:+	0	+
#Deleted in new
chr1	16566407	16566459	ENSG00000219481.10|NBPF1|pc|chr1:16566407:16566459:-	0	-
#Deleted in new
chr1	16567178	16567351	ENSG00000219481.10|NBPF1|pc|chr1:16567178:16567351:-	0	-
#Deleted in new
chr1	16567978	16568030	ENSG00000219481.10|NBPF1|pc|chr1:16567978:16568030:-	0	-
#Deleted in new
chr1	16569072	16569236	ENSG00000219481.10|NBPF1|pc|chr1:16569072:16569236:-	0	-
#Deleted in new
chr1	165706555	165707284	ENSG00000273365.1|AL451074.6|lncRNA|chr1:165706555:165707284:-	0	-
#Partially deleted in new
chr1	165724292	165728121	ENSG00000143183.16|TMCO1|pc|chr1:165724292:165728121:-	0	-
#Deleted in new
chr1	16573141	16573193	ENSG00000219481.10|NBPF1|pc|chr1:16573141:16573193:-	0	-
#Deleted in new
chr1	16574486	16574692	ENSG00000219481.10|NBPF1|pc|chr1:16574486:16574692:-	0	-
#Deleted in new
chr11	65745728	65745798	ENSG00000255557.1|AP001266.2|lncRNA|chr11:65745728:65745798:+	0	+
#Deleted in new
chr1	16575156	16575229	ENSG00000219481.10|NBPF1|pc|chr1:16575156:16575229:-	0	-
#Deleted in new
chr1	165754853	165754990	ENSG00000143183.16|TMCO1|pc|chr1:165754853:165754990:-	0	-
#Deleted in new
chr1	165754892	165754990	ENSG00000143183.16|TMCO1|pc|chr1:165754892:165754990:-	0	-
#Deleted in new
chr1	16576266	16576481	ENSG00000219481.10|NBPF1|pc|chr1:16576266:16576481:-	0	-
#Deleted in new
chr11	65771191	65771585	ENSG00000255557.1|AP001266.2|lncRNA|chr11:65771191:65771585:+	0	+
#Deleted in new
chr1	16577316	16577419	ENSG00000219481.10|NBPF1|pc|chr1:16577316:16577419:-	0	-
#Partially deleted in new
chr1	165773473	165775176	ENSG00000224358.1|AL451074.2|lncRNA|chr1:165773473:165775176:+	0	+
#Deleted in new
chr1	16579192	16579402	ENSG00000219481.10|NBPF1|pc|chr1:16579192:16579402:-	0	-
#Deleted in new
chr1	165797696	165797813	ENSG00000143183.16|TMCO1|pc|chr1:165797696:165797813:-	0	-
#Deleted in new
chr1	165799917	165800035	ENSG00000143183.16|TMCO1|pc|chr1:165799917:165800035:-	0	-
#Deleted in new
chr1	16580744	16580956	ENSG00000219481.10|NBPF1|pc|chr1:16580744:16580956:-	0	-
#Deleted in new
chr1	16581419	16581492	ENSG00000219481.10|NBPF1|pc|chr1:16581419:16581492:-	0	-
#Deleted in new
chr1	16582543	16582758	ENSG00000219481.10|NBPF1|pc|chr1:16582543:16582758:-	0	-
#Deleted in new
chr1	16583593	16583696	ENSG00000219481.10|NBPF1|pc|chr1:16583593:16583696:-	0	-
#Deleted in new
chr1	16585488	16585698	ENSG00000219481.10|NBPF1|pc|chr1:16585488:16585698:-	0	-
#Deleted in new
chr1	16587049	16587261	ENSG00000219481.10|NBPF1|pc|chr1:16587049:16587261:-	0	-
#Partially deleted in new
chr11	65872682	65872740	ENSG00000172638.12|EFEMP2|pc|chr11:65872682:65872740:-	0	-
#Deleted in new
chr1	16587724	16587797	ENSG00000219481.10|NBPF1|pc|chr1:16587724:16587797:-	0	-
#Deleted in new
chr11	65886106	65886138	ENSG00000172500.12|FIBP|pc|chr11:65886106:65886138:-	0	-
#Deleted in new
chr1	16588848	16589063	ENSG00000219481.10|NBPF1|pc|chr1:16588848:16589063:-	0	-
#Deleted in new
chr1	165892124	165892178	ENSG00000236364.3|AL358115.1|lncRNA|chr1:165892124:165892178:-	0	-
#Deleted in new
chr1	165892651	165892774	ENSG00000143179.14|UCK2|pc|chr1:165892651:165892774:+	0	+
#Deleted in new
chr1	165894165	165894579	ENSG00000143179.14|UCK2|pc|chr1:165894165:165894579:+	0	+
#Deleted in new
chr1	165897978	165898004	ENSG00000143179.14|UCK2|pc|chr1:165897978:165898004:+	0	+
#Deleted in new
chr1	16589898	16590001	ENSG00000219481.10|NBPF1|pc|chr1:16589898:16590001:-	0	-
#Deleted in new
chr1	16591846	16592056	ENSG00000219481.10|NBPF1|pc|chr1:16591846:16592056:-	0	-
#Deleted in new
chr1	16592158	16592313	ENSG00000219481.10|NBPF1|pc|chr1:16592158:16592313:-	0	-
#Deleted in new
chr1	1659324	1659452	ENSG00000272004.1|FO704657.1|lncRNA|chr1:1659324:1659452:+	0	+
#Deleted in new
chr1	16593440	16593567	ENSG00000219481.10|NBPF1|pc|chr1:16593440:16593567:-	0	-
#Deleted in new
chr1	16593561	16593753	ENSG00000219481.10|NBPF1|pc|chr1:16593561:16593753:-	0	-
#Deleted in new
chr11	6593633	6593758	ENSG00000179532.12|DNHD1|pc|chr11:6593633:6593758:+	0	+
#Deleted in new
chr1	16594591	16594661	ENSG00000219481.10|NBPF1|pc|chr1:16594591:16594661:-	0	-
#Deleted in new
chr1	16594930	16595009	ENSG00000219481.10|NBPF1|pc|chr1:16594930:16595009:-	0	-
#Deleted in new
chr1	16594930	16595013	ENSG00000219481.10|NBPF1|pc|chr1:16594930:16595013:-	0	-
#Deleted in new
chr1	1659528	1660111	ENSG00000189339.11|SLC35E2B|pc|chr1:1659528:1660111:-	0	-
#Partially deleted in new
chr11	65979011	65979828	ENSG00000175467.14|SART1|pc|chr11:65979011:65979828:+	0	+
#Deleted in new
chr11	66051519	66051603	ENSG00000087365.15|SF3B2|pc|chr11:66051519:66051603:+	0	+
#Partially deleted in new
chr1	16605405	16607691	ENSG00000219481.10|NBPF1|pc|chr1:16605405:16607691:-	0	-
#Partially deleted in new
chr11	66064640	66068045	ENSG00000087365.15|SF3B2|pc|chr11:66064640:66068045:+	0	+
#Deleted in new
chr11	66067276	66067539	ENSG00000255038.1|AP006287.2|lncRNA|chr11:66067276:66067539:-	0	-
#Deleted in new
chr1	166082604	166082731	ENSG00000203307.2|AL626787.1|lncRNA|chr1:166082604:166082731:+	0	+
#Deleted in new
chr1	16608507	16608650	ENSG00000219481.10|NBPF1|pc|chr1:16608507:16608650:-	0	-
#Deleted in new
chr1	16608507	16608779	ENSG00000219481.10|NBPF1|pc|chr1:16608507:16608779:-	0	-
#Deleted in new
chr11	66100762	66100874	ENSG00000175115.11|PACS1|pc|chr11:66100762:66100874:+	0	+
#Deleted in new
chr11	66121020	66121067	ENSG00000175115.11|PACS1|pc|chr11:66121020:66121067:+	0	+
#Partially deleted in new
chr1	1661477	1666019	ENSG00000189339.11|SLC35E2B|pc|chr1:1661477:1666019:-	0	-
#Partially deleted in new
chr1	166147781	166147959	ENSG00000230898.1|AL596087.2|lncRNA|chr1:166147781:166147959:-	0	-
#Partially deleted in new
chr1	1661478	1666019	ENSG00000189339.11|SLC35E2B|pc|chr1:1661478:1666019:-	0	-
#Deleted in new
chr1	16617390	16617729	ENSG00000271732.1|AL137798.1|lncRNA|chr1:16617390:16617729:+	0	+
#Deleted in new
chr1	1662330	1662602	ENSG00000272004.1|FO704657.1|lncRNA|chr1:1662330:1662602:+	0	+
#Deleted in new
chr11	66246115	66246239	ENSG00000255320.1|AP000759.1|lncRNA|chr11:66246115:66246239:-	0	-
#Partially deleted in new
chr11	66318833	66319237	ENSG00000254458.1|AP001107.3|lncRNA|chr11:66318833:66319237:+	0	+
#Deleted in new
chr11	66339782	66339875	ENSG00000254756.1|AP001107.6|lncRNA|chr11:66339782:66339875:+	0	+
#Deleted in new
chr11	66349334	66349470	ENSG00000255468.6|AP001107.9|lncRNA|chr11:66349334:66349470:+	0	+
#Deleted in new
chr11	66351196	66351374	ENSG00000255468.6|AP001107.9|lncRNA|chr11:66351196:66351374:+	0	+
#Deleted in new
chr11	66353454	66353619	ENSG00000255468.6|AP001107.9|lncRNA|chr11:66353454:66353619:+	0	+
#Deleted in new
chr11	66358224	66358322	ENSG00000255468.6|AP001107.9|lncRNA|chr11:66358224:66358322:+	0	+
#Deleted in new
chr11	66364524	66364804	ENSG00000255468.6|AP001107.9|lncRNA|chr11:66364524:66364804:+	0	+
#Deleted in new
chr11	66372009	66372099	ENSG00000174669.11|SLC29A2|pc|chr11:66372009:66372099:-	0	-
#Deleted in new
chr11	66372009	66372174	ENSG00000174669.11|SLC29A2|pc|chr11:66372009:66372174:-	0	-
#Deleted in new
chr11	66372009	66372214	ENSG00000174669.11|SLC29A2|pc|chr11:66372009:66372214:-	0	-
#Partially deleted in new
chr1	1663781	1666019	ENSG00000189339.11|SLC35E2B|pc|chr1:1663781:1666019:-	0	-
#Partially deleted in new
chr11	66436801	66436909	ENSG00000174547.13|MRPL11|pc|chr11:66436801:66436909:-	0	-
#Partially deleted in new
chr1	166475771	166476204	ENSG00000234142.1|LINC01675|lncRNA|chr1:166475771:166476204:-	0	-
#Deleted in new
chr1	166476880	166476969	ENSG00000234142.1|LINC01675|lncRNA|chr1:166476880:166476969:-	0	-
#Partially deleted in new
chr11	66483050	66483169	ENSG00000254986.7|DPP3|pc|chr11:66483050:66483169:+	0	+
#Deleted in new
chr1	166489860	166490039	ENSG00000234142.1|LINC01675|lncRNA|chr1:166489860:166490039:-	0	-
#Deleted in new
chr11	66520309	66520427	ENSG00000174483.19|BBS1|pc|chr11:66520309:66520427:+	0	+
#Deleted in new
chr11	66520778	66520889	ENSG00000174483.19|BBS1|pc|chr11:66520778:66520889:+	0	+
#Deleted in new
chr11	66524154	66524276	ENSG00000174165.7|ZDHHC24|pc|chr11:66524154:66524276:-	0	-
#Deleted in new
chr11	66526935	66527006	ENSG00000174165.7|ZDHHC24|pc|chr11:66526935:66527006:-	0	-
#Deleted in new
chr11	66527572	66527701	ENSG00000174483.19|BBS1|pc|chr11:66527572:66527701:+	0	+
#Partially deleted in new
chr11	66535897	66539824	ENSG00000174165.7|ZDHHC24|pc|chr11:66535897:66539824:-	0	-
#Deleted in new
chr11	665909	666490	ENSG00000255158.1|AC131934.1|lncRNA|chr11:665909:666490:+	0	+
#Deleted in new
chr11	66605153	66605298	ENSG00000173992.8|CCS|pc|chr11:66605153:66605298:+	0	+
#Deleted in new
chr11	66620845	66620938	ENSG00000239306.4|RBM14|pc|chr11:66620845:66620938:+	0	+
#Partially deleted in new
chr11	66649735	66649930	ENSG00000173933.19|RBM4|pc|chr11:66649735:66649930:+	0	+
#Deleted in new
chr11	66652276	66652372	ENSG00000173933.19|RBM4|pc|chr11:66652276:66652372:+	0	+
#Deleted in new
chr1	16665390	16665527	ENSG00000282143.1|AL137798.2|lncRNA|chr1:16665390:16665527:+	0	+
#Deleted in new
chr1	16666940	16667524	ENSG00000282143.1|AL137798.2|lncRNA|chr1:16666940:16667524:+	0	+
#Deleted in new
chr11	66670935	66670983	ENSG00000173914.11|RBM4B|pc|chr11:66670935:66670983:-	0	-
#Deleted in new
chr11	66689350	66689356	ENSG00000173898.11|SPTBN2|pc|chr11:66689350:66689356:-	0	-
#Deleted in new
chr11	66721349	66721370	ENSG00000173898.11|SPTBN2|pc|chr11:66721349:66721370:-	0	-
#Deleted in new
chr11	66721349	66721399	ENSG00000173898.11|SPTBN2|pc|chr11:66721349:66721399:-	0	-
#Deleted in new
chr11	66721349	66721440	ENSG00000173898.11|SPTBN2|pc|chr11:66721349:66721440:-	0	-
#Deleted in new
chr1	16673002	16673512	ENSG00000237847.2|FAM231A|pc|chr1:16673002:16673512:+	0	+
#Deleted in new
chr11	66756352	66756505	ENSG00000173715.15|C11orf80|pc|chr11:66756352:66756505:+	0	+
#Deleted in new
chr11	66756354	66756505	ENSG00000173715.15|C11orf80|pc|chr11:66756354:66756505:+	0	+
#Deleted in new
chr11	66828715	66828797	ENSG00000173715.15|C11orf80|pc|chr11:66828715:66828797:+	0	+
#Deleted in new
chr11	66839131	66839207	ENSG00000173715.15|C11orf80|pc|chr11:66839131:66839207:+	0	+
#Deleted in new
chr1	166895710	166896101	ENSG00000143195.12|ILDR2|pc|chr1:166895710:166896101:-	0	-
#Deleted in new
chr11	66907820	66907901	ENSG00000173599.13|PC|pc|chr11:66907820:66907901:-	0	-
#Partially deleted in new
chr1	166989924	166990697	ENSG00000143194.12|MAEL|pc|chr1:166989924:166990697:+	0	+
#Deleted in new
chr11	67010822	67010994	ENSG00000173227.13|SYT12|pc|chr11:67010822:67010994:+	0	+
#Partially deleted in new
chr1	1670424	1671629	ENSG00000189339.11|SLC35E2B|pc|chr1:1670424:1671629:-	0	-
#Deleted in new
chr1	16705458	16705594	ENSG00000279151.1|AL021920.1|lncRNA|chr1:16705458:16705594:+	0	+
#Deleted in new
chr11	67131951	67132073	ENSG00000173120.14|KDM2A|pc|chr11:67131951:67132073:+	0	+
#Deleted in new
chr11	67143203	67143371	ENSG00000173120.14|KDM2A|pc|chr11:67143203:67143371:+	0	+
#Partially deleted in new
chr11	67149054	67149207	ENSG00000173120.14|KDM2A|pc|chr11:67149054:67149207:+	0	+
#Deleted in new
chr1	167175916	167176412	ENSG00000231605.5|LINC01363|lncRNA|chr1:167175916:167176412:-	0	-
#Deleted in new
chr1	167176073	167176815	ENSG00000231605.5|LINC01363|lncRNA|chr1:167176073:167176815:-	0	-
#Deleted in new
chr1	167176220	167176815	ENSG00000231605.5|LINC01363|lncRNA|chr1:167176220:167176815:-	0	-
#Deleted in new
chr1	167176346	167176815	ENSG00000231605.5|LINC01363|lncRNA|chr1:167176346:167176815:-	0	-
#Deleted in new
chr1	167176692	167176815	ENSG00000231605.5|LINC01363|lncRNA|chr1:167176692:167176815:-	0	-
#Partially deleted in new
chr1	167195688	167195748	ENSG00000231605.5|LINC01363|lncRNA|chr1:167195688:167195748:-	0	-
#Partially deleted in new
chr11	67243506	67243816	ENSG00000173120.14|KDM2A|pc|chr11:67243506:67243816:+	0	+
#Partially deleted in new
chr1	167257819	167257917	ENSG00000143190.21|POU2F1|pc|chr1:167257819:167257917:+	0	+
#Partially deleted in new
chr11	67276536	67277348	ENSG00000173020.10|GRK2|pc|chr11:67276536:67277348:+	0	+
#Deleted in new
chr1	167319013	167319056	ENSG00000143190.21|POU2F1|pc|chr1:167319013:167319056:+	0	+
#Deleted in new
chr1	167337969	167338258	ENSG00000143190.21|POU2F1|pc|chr1:167337969:167338258:+	0	+
#Deleted in new
chr1	16733951	16734461	ENSG00000279132.2|FAM231C|pc|chr1:16733951:16734461:-	0	-
#Deleted in new
chr1	167357459	167357521	ENSG00000143190.21|POU2F1|pc|chr1:167357459:167357521:+	0	+
#Deleted in new
chr1	167376552	167376587	ENSG00000143190.21|POU2F1|pc|chr1:167376552:167376587:+	0	+
#Partially deleted in new
chr1	167379107	167381000	ENSG00000272033.1|AL136984.1|lncRNA|chr1:167379107:167381000:+	0	+
#Deleted in new
chr11	67387534	67387671	ENSG00000172613.7|RAD9A|pc|chr11:67387534:67387671:+	0	+
#Deleted in new
chr1	16739937	16740523	ENSG00000282740.1|AL021920.3|lncRNA|chr1:16739937:16740523:-	0	-
#Partially deleted in new
chr11	673997	674259	ENSG00000255158.1|AC131934.1|lncRNA|chr11:673997:674259:+	0	+
#Deleted in new
chr1	16740272	16740397	ENSG00000058453.16|CROCC|pc|chr1:16740272:16740397:+	0	+
#Deleted in new
chr1	16741936	16742073	ENSG00000282740.1|AL021920.3|lncRNA|chr1:16741936:16742073:-	0	-
#Deleted in new
chr11	67443752	67443821	ENSG00000172725.13|CORO1B|pc|chr11:67443752:67443821:-	0	-
#Deleted in new
chr11	67453560	67453669	ENSG00000175544.13|CABP4|pc|chr11:67453560:67453669:+	0	+
#Partially deleted in new
chr11	67458630	67460313	ENSG00000175544.13|CABP4|pc|chr11:67458630:67460313:+	0	+
#Deleted in new
chr1	167459607	167459891	ENSG00000273160.1|AL359962.2|lncRNA|chr1:167459607:167459891:-	0	-
#Partially deleted in new
chr11	67461709	67464696	ENSG00000172663.8|TMEM134|pc|chr11:67461709:67464696:-	0	-
#Partially deleted in new
chr11	67602879	67605103	ENSG00000184224.3|C11orf72|lncRNA|chr11:67602879:67605103:-	0	-
#Partially deleted in new
chr11	67604052	67605106	ENSG00000184224.3|C11orf72|lncRNA|chr11:67604052:67605106:-	0	-
#Deleted in new
chr11	67605892	67605964	ENSG00000184224.3|C11orf72|lncRNA|chr11:67605892:67605964:-	0	-
#Deleted in new
chr11	67605892	67606011	ENSG00000184224.3|C11orf72|lncRNA|chr11:67605892:67606011:-	0	-
#Deleted in new
chr1	167640570	167640712	ENSG00000198771.10|RCSD1|pc|chr1:167640570:167640712:+	0	+
#Deleted in new
chr1	167641390	167641741	ENSG00000198771.10|RCSD1|pc|chr1:167641390:167641741:+	0	+
#Partially deleted in new
chr1	167641390	167642006	ENSG00000198771.10|RCSD1|pc|chr1:167641390:167642006:+	0	+
#Deleted in new
chr11	67650582	67650659	ENSG00000132744.7|ACY3|pc|chr11:67650582:67650659:-	0	-
#Partially deleted in new
chr11	67662161	67663399	ENSG00000132746.14|ALDH3B2|pc|chr11:67662161:67663399:-	0	-
#Partially deleted in new
chr11	67662162	67663399	ENSG00000132746.14|ALDH3B2|pc|chr11:67662162:67663399:-	0	-
#Deleted in new
chr1	167663490	167665040	ENSG00000198771.10|RCSD1|pc|chr1:167663490:167665040:+	0	+
#Deleted in new
chr11	67667937	67667970	ENSG00000132746.14|ALDH3B2|pc|chr11:67667937:67667970:-	0	-
#Partially deleted in new
chr11	67671062	67671321	ENSG00000132746.14|ALDH3B2|pc|chr11:67671062:67671321:-	0	-
#Partially deleted in new
chr11	67671062	67671325	ENSG00000132746.14|ALDH3B2|pc|chr11:67671062:67671325:-	0	-
#Deleted in new
chr11	67673733	67673791	ENSG00000132746.14|ALDH3B2|pc|chr11:67673733:67673791:-	0	-
#Deleted in new
chr11	67674436	67674631	ENSG00000132746.14|ALDH3B2|pc|chr11:67674436:67674631:-	0	-
#Deleted in new
chr11	67674692	67674731	ENSG00000132746.14|ALDH3B2|pc|chr11:67674692:67674731:-	0	-
#Deleted in new
chr11	67681175	67681200	ENSG00000132746.14|ALDH3B2|pc|chr11:67681175:67681200:-	0	-
#Deleted in new
chr1	167820662	167821224	ENSG00000232194.1|Z99943.1|lncRNA|chr1:167820662:167821224:+	0	+
#Deleted in new
chr11	678322	678391	ENSG00000255158.1|AC131934.1|lncRNA|chr11:678322:678391:+	0	+
#Deleted in new
chr1	167834446	167834694	ENSG00000143199.17|ADCY10|pc|chr1:167834446:167834694:-	0	-
#Split in new
chr11	6785017	6791558	ENSG00000279486.5|OR2AG1|pc|chr11:6785017:6791558:+	0	+
#Deleted in new
chr11	67886476	67886689	ENSG00000251637.6|AP003716.1|lncRNA|chr11:67886476:67886689:+	0	+
#Deleted in new
chr11	67886495	67886689	ENSG00000251637.6|AP003716.1|lncRNA|chr11:67886495:67886689:+	0	+
#Deleted in new
chr11	67886589	67886689	ENSG00000251637.6|AP003716.1|lncRNA|chr11:67886589:67886689:+	0	+
#Deleted in new
chr11	67888152	67888324	ENSG00000251637.6|AP003716.1|lncRNA|chr11:67888152:67888324:+	0	+
#Deleted in new
chr11	67888152	67891345	ENSG00000251637.6|AP003716.1|lncRNA|chr11:67888152:67891345:+	0	+
#Deleted in new
chr11	67893878	67894093	ENSG00000251637.6|AP003716.1|lncRNA|chr11:67893878:67894093:+	0	+
#Partially deleted in new
chr11	6790661	6791558	ENSG00000279486.5|OR2AG1|pc|chr11:6790661:6791558:+	0	+
#Deleted in new
chr1	167968489	167968533	ENSG00000143164.15|DCAF6|pc|chr1:167968489:167968533:+	0	+
#Deleted in new
chr1	167969203	167969259	ENSG00000143164.15|DCAF6|pc|chr1:167969203:167969259:+	0	+
#Deleted in new
chr11	68004806	68004982	ENSG00000110057.7|UNC93B1|pc|chr11:68004806:68004982:-	0	-
#Deleted in new
chr11	68024207	68024615	ENSG00000006534.15|ALDH3B1|pc|chr11:68024207:68024615:+	0	+
#Deleted in new
chr11	68029283	68029420	ENSG00000255306.1|AC004923.4|lncRNA|chr11:68029283:68029420:-	0	-
#Partially deleted in new
chr11	68032285	68035278	ENSG00000110717.12|NDUFS8|pc|chr11:68032285:68035278:+	0	+
#Partially deleted in new
chr11	68033110	68033730	ENSG00000110717.12|NDUFS8|pc|chr11:68033110:68033730:+	0	+
#Deleted in new
chr11	68033851	68034174	ENSG00000110717.12|NDUFS8|pc|chr11:68033851:68034174:+	0	+
#Deleted in new
chr11	68035627	68035683	ENSG00000110717.12|NDUFS8|pc|chr11:68035627:68035683:+	0	+
#Deleted in new
chr11	68035627	68035788	ENSG00000110717.12|NDUFS8|pc|chr11:68035627:68035788:+	0	+
#Deleted in new
chr11	68046936	68046998	ENSG00000110719.9|TCIRG1|pc|chr11:68046936:68046998:+	0	+
#Deleted in new
chr11	68052092	68052441	ENSG00000255031.5|AP002807.1|lncRNA|chr11:68052092:68052441:+	0	+
#Deleted in new
chr11	68053358	68053385	ENSG00000255031.5|AP002807.1|lncRNA|chr11:68053358:68053385:+	0	+
#Partially deleted in new
chr11	68061492	68061830	ENSG00000110721.11|CHKA|pc|chr11:68061492:68061830:-	0	-
#Deleted in new
chr11	68061599	68061725	ENSG00000110721.11|CHKA|pc|chr11:68061599:68061725:-	0	-
#Partially deleted in new
chr1	168087584	168089565	ENSG00000143147.14|GPR161|pc|chr1:168087584:168089565:-	0	-
#Deleted in new
chr1	168114455	168114549	ENSG00000143147.14|GPR161|pc|chr1:168114455:168114549:-	0	-
#Deleted in new
chr1	168118600	168118735	ENSG00000143147.14|GPR161|pc|chr1:168118600:168118735:-	0	-
#Deleted in new
chr11	68129797	68130082	ENSG00000255236.2|AP002992.1|lncRNA|chr11:68129797:68130082:+	0	+
#Deleted in new
chr11	68130178	68130444	ENSG00000255236.2|AP002992.1|lncRNA|chr11:68130178:68130444:+	0	+
#Deleted in new
chr11	68130178	68130518	ENSG00000255236.2|AP002992.1|lncRNA|chr11:68130178:68130518:+	0	+
#Deleted in new
chr11	68174087	68174210	ENSG00000110066.14|KMT5B|pc|chr11:68174087:68174210:-	0	-
#Deleted in new
chr1	168192207	168192395	ENSG00000143155.12|TIPRL|pc|chr1:168192207:168192395:+	0	+
#Partially deleted in new
chr11	6821941	6826094	ENSG00000283415.1|AC087280.2|lncRNA|chr11:6821941:6826094:-	0	-
#Deleted in new
chr11	68267100	68267397	ENSG00000171067.10|C11orf24|pc|chr11:68267100:68267397:-	0	-
#Deleted in new
chr11	68267179	68267397	ENSG00000171067.10|C11orf24|pc|chr11:68267179:68267397:-	0	-
#Deleted in new
chr11	68267460	68267685	ENSG00000171067.10|C11orf24|pc|chr11:68267460:68267685:-	0	-
#Partially deleted in new
chr1	168400828	168402343	ENSG00000228697.2|AL023755.1|lncRNA|chr1:168400828:168402343:-	0	-
#Deleted in new
chr1	168401482	168401530	ENSG00000283255.1|AL022100.2|lncRNA|chr1:168401482:168401530:-	0	-
#Deleted in new
chr11	68404222	68404416	ENSG00000162337.11|LRP5|pc|chr11:68404222:68404416:+	0	+
#Deleted in new
chr1	168407238	168407274	ENSG00000283255.1|AL022100.2|lncRNA|chr1:168407238:168407274:-	0	-
#Partially deleted in new
chr1	168412792	168412936	ENSG00000228697.2|AL023755.1|lncRNA|chr1:168412792:168412936:-	0	-
#Deleted in new
chr11	68412958	68413195	ENSG00000162337.11|LRP5|pc|chr11:68412958:68413195:+	0	+
#Deleted in new
chr1	168413591	168413687	ENSG00000228697.2|AL023755.1|lncRNA|chr1:168413591:168413687:-	0	-
#Deleted in new
chr11	68445572	68445686	ENSG00000162337.11|LRP5|pc|chr11:68445572:68445686:+	0	+
#Deleted in new
chr11	68446980	68447157	ENSG00000162337.11|LRP5|pc|chr11:68446980:68447157:+	0	+
#Deleted in new
chr1	168464213	168464373	ENSG00000228697.2|AL023755.1|lncRNA|chr1:168464213:168464373:-	0	-
#Deleted in new
chr1	168464312	168464373	ENSG00000228697.2|AL023755.1|lncRNA|chr1:168464312:168464373:-	0	-
#Deleted in new
chr1	168485242	168485306	ENSG00000228697.2|AL023755.1|lncRNA|chr1:168485242:168485306:-	0	-
#Deleted in new
chr1	168485572	168485731	ENSG00000228697.2|AL023755.1|lncRNA|chr1:168485572:168485731:-	0	-
#Deleted in new
chr11	6850753	6850818	ENSG00000283415.1|AC087280.2|lncRNA|chr11:6850753:6850818:-	0	-
#Deleted in new
chr1	16851256	16851477	ENSG00000223643.6|BX284668.1|lncRNA|chr1:16851256:16851477:-	0	-
#Deleted in new
chr1	16851320	16851477	ENSG00000223643.6|BX284668.1|lncRNA|chr1:16851320:16851477:-	0	-
#Deleted in new
chr11	68515027	68515166	ENSG00000110075.14|PPP6R3|pc|chr11:68515027:68515166:+	0	+
#Deleted in new
chr1	16851573	16851723	ENSG00000223643.6|BX284668.1|lncRNA|chr1:16851573:16851723:-	0	-
#Deleted in new
chr1	16852074	16852369	ENSG00000223643.6|BX284668.1|lncRNA|chr1:16852074:16852369:-	0	-
#Deleted in new
chr11	68522493	68522689	ENSG00000110075.14|PPP6R3|pc|chr11:68522493:68522689:+	0	+
#Deleted in new
chr1	16852761	16852799	ENSG00000223643.6|BX284668.1|lncRNA|chr1:16852761:16852799:-	0	-
#Deleted in new
chr1	16852996	16853129	ENSG00000223643.6|BX284668.1|lncRNA|chr1:16852996:16853129:-	0	-
#Deleted in new
chr1	168609	168767	ENSG00000241860.6|AL627309.5|lncRNA|chr1:168609:168767:-	0	-
#Deleted in new
chr11	68615744	68616019	ENSG00000260808.1|AP003096.1|lncRNA|chr11:68615744:68616019:-	0	-
#Deleted in new
chr11	68615791	68616019	ENSG00000260808.1|AP003096.1|lncRNA|chr11:68615791:68616019:-	0	-
#Deleted in new
chr11	68615881	68616019	ENSG00000260808.1|AP003096.1|lncRNA|chr11:68615881:68616019:-	0	-
#Deleted in new
chr11	68616188	68616230	ENSG00000260808.1|AP003096.1|lncRNA|chr11:68616188:68616230:-	0	-
#Deleted in new
chr11	68616188	68616286	ENSG00000260808.1|AP003096.1|lncRNA|chr11:68616188:68616286:-	0	-
#Deleted in new
chr11	68616188	68616447	ENSG00000260808.1|AP003096.1|lncRNA|chr11:68616188:68616447:-	0	-
#Deleted in new
chr11	68616474	68616711	ENSG00000260808.1|AP003096.1|lncRNA|chr11:68616474:68616711:-	0	-
#Partially deleted in new
chr11	6863056	6863351	ENSG00000170790.5|OR10A2|pc|chr11:6863056:6863351:+	0	+
#Deleted in new
chr11	68683778	68684126	ENSG00000069482.6|GAL|pc|chr11:68683778:68684126:+	0	+
#Deleted in new
chr1	16870944	16873107	ENSG00000228549.3|BX284668.2|lncRNA|chr1:16870944:16873107:+	0	+
#Deleted in new
chr11	68710510	68710606	ENSG00000132749.10|TESMIN|pc|chr11:68710510:68710606:-	0	-
#Deleted in new
chr1	16871760	16872153	ENSG00000228549.3|BX284668.2|lncRNA|chr1:16871760:16872153:+	0	+
#Deleted in new
chr1	16872156	16872591	ENSG00000228549.3|BX284668.2|lncRNA|chr1:16872156:16872591:+	0	+
#Deleted in new
chr1	16872257	16872342	ENSG00000228549.3|BX284668.2|lncRNA|chr1:16872257:16872342:+	0	+
#Deleted in new
chr1	16872283	16873507	ENSG00000228549.3|BX284668.2|lncRNA|chr1:16872283:16873507:+	0	+
#Deleted in new
chr1	16873038	16873143	ENSG00000228549.3|BX284668.2|lncRNA|chr1:16873038:16873143:+	0	+
#Partially deleted in new
chr11	68732586	68732914	ENSG00000132749.10|TESMIN|pc|chr11:68732586:68732914:-	0	-
#Partially deleted in new
chr11	68736131	68738788	ENSG00000132749.10|TESMIN|pc|chr11:68736131:68738788:-	0	-
#Deleted in new
chr1	16873692	16874041	ENSG00000228549.3|BX284668.2|lncRNA|chr1:16873692:16874041:+	0	+
#Deleted in new
chr1	16873722	16874044	ENSG00000228549.3|BX284668.2|lncRNA|chr1:16873722:16874044:+	0	+
#Deleted in new
chr1	16873722	16874079	ENSG00000228549.3|BX284668.2|lncRNA|chr1:16873722:16874079:+	0	+
#Deleted in new
chr1	16873722	16874092	ENSG00000228549.3|BX284668.2|lncRNA|chr1:16873722:16874092:+	0	+
#Deleted in new
chr11	68737327	68737885	ENSG00000132749.10|TESMIN|pc|chr11:68737327:68737885:-	0	-
#Deleted in new
chr11	68751419	68751460	ENSG00000132749.10|TESMIN|pc|chr11:68751419:68751460:-	0	-
#Deleted in new
chr11	68751419	68751467	ENSG00000132749.10|TESMIN|pc|chr11:68751419:68751467:-	0	-
#Deleted in new
chr11	68751419	68751564	ENSG00000132749.10|TESMIN|pc|chr11:68751419:68751564:-	0	-
#Partially deleted in new
chr11	68754619	68754851	ENSG00000110090.12|CPT1A|pc|chr11:68754619:68754851:-	0	-
#Partially deleted in new
chr11	68754621	68754851	ENSG00000110090.12|CPT1A|pc|chr11:68754621:68754851:-	0	-
#Deleted in new
chr11	68773602	68773887	ENSG00000110090.12|CPT1A|pc|chr11:68773602:68773887:-	0	-
#Deleted in new
chr1	168774324	168774490	ENSG00000235736.1|AL031275.1|lncRNA|chr1:168774324:168774490:-	0	-
#Deleted in new
chr11	68785743	68786035	ENSG00000110090.12|CPT1A|pc|chr11:68785743:68786035:-	0	-
#Deleted in new
chr1	168786938	168787228	ENSG00000225826.1|LINC00626|lncRNA|chr1:168786938:168787228:+	0	+
#Deleted in new
chr11	68818598	68818692	ENSG00000110090.12|CPT1A|pc|chr11:68818598:68818692:-	0	-
#Deleted in new
chr11	68870663	68870915	ENSG00000250508.1|AP000808.1|lncRNA|chr11:68870663:68870915:+	0	+
#Deleted in new
chr11	68871542	68874542	ENSG00000250508.1|AP000808.1|lncRNA|chr11:68871542:68874542:+	0	+
#Deleted in new
chr1	16888537	16888785	ENSG00000238142.1|BX284668.5|lncRNA|chr1:16888537:16888785:-	0	-
#Deleted in new
chr1	16888541	16888782	ENSG00000238142.1|BX284668.5|lncRNA|chr1:16888541:16888782:-	0	-
#Deleted in new
chr1	16888541	16888785	ENSG00000238142.1|BX284668.5|lncRNA|chr1:16888541:16888785:-	0	-
#Split in new
chr11	68891278	68892993	ENSG00000197345.12|MRPL21|pc|chr11:68891278:68892993:-	0	-
#Deleted in new
chr1	16889215	16889373	ENSG00000238142.1|BX284668.5|lncRNA|chr1:16889215:16889373:-	0	-
#Deleted in new
chr1	16889547	16889642	ENSG00000238142.1|BX284668.5|lncRNA|chr1:16889547:16889642:-	0	-
#Deleted in new
chr1	16889547	16889649	ENSG00000238142.1|BX284668.5|lncRNA|chr1:16889547:16889649:-	0	-
#Partially deleted in new
chr1	168903904	168904712	ENSG00000203601.3|LINC00970|lncRNA|chr1:168903904:168904712:-	0	-
#Deleted in new
chr1	168907858	168907970	ENSG00000203601.3|LINC00970|lncRNA|chr1:168907858:168907970:-	0	-
#Deleted in new
chr11	68926195	68926365	ENSG00000132740.8|IGHMBP2|pc|chr11:68926195:68926365:+	0	+
#Deleted in new
chr11	68930090	68930434	ENSG00000132740.8|IGHMBP2|pc|chr11:68930090:68930434:+	0	+
#Deleted in new
chr11	68930322	68930434	ENSG00000132740.8|IGHMBP2|pc|chr11:68930322:68930434:+	0	+
#Deleted in new
chr11	68942768	68942852	ENSG00000255741.1|AP000808.2|lncRNA|chr11:68942768:68942852:-	0	-
#Deleted in new
chr11	689662	689813	ENSG00000177030.16|DEAF1|pc|chr11:689662:689813:-	0	-
#Partially deleted in new
chr11	69000764	69002048	ENSG00000261625.1|AP003071.4|lncRNA|chr11:69000764:69002048:-	0	-
#Deleted in new
chr11	69015610	69015719	ENSG00000256508.2|MRGPRF-AS1|lncRNA|chr11:69015610:69015719:+	0	+
#Deleted in new
chr11	69017635	69018447	ENSG00000256508.2|MRGPRF-AS1|lncRNA|chr11:69017635:69018447:+	0	+
#Deleted in new
chr1	16904338	16904776	ENSG00000272426.1|BX284668.6|lncRNA|chr1:16904338:16904776:-	0	-
#Deleted in new
chr1	169048	169264	ENSG00000241860.6|AL627309.5|lncRNA|chr1:169048:169264:-	0	-
#Deleted in new
chr11	69048896	69049106	ENSG00000162341.16|TPCN2|pc|chr11:69048896:69049106:+	0	+
#Deleted in new
chr11	69048931	69049106	ENSG00000162341.16|TPCN2|pc|chr11:69048931:69049106:+	0	+
#Deleted in new
chr11	69048933	69049106	ENSG00000162341.16|TPCN2|pc|chr11:69048933:69049106:+	0	+
#Deleted in new
chr11	69048960	69049106	ENSG00000162341.16|TPCN2|pc|chr11:69048960:69049106:+	0	+
#Deleted in new
chr11	69048974	69049106	ENSG00000162341.16|TPCN2|pc|chr11:69048974:69049106:+	0	+
#Deleted in new
chr11	69049029	69049106	ENSG00000162341.16|TPCN2|pc|chr11:69049029:69049106:+	0	+
#Deleted in new
chr1	1690975	1691393	ENSG00000189339.11|SLC35E2B|pc|chr1:1690975:1691393:-	0	-
#Deleted in new
chr11	69108852	69109094	ENSG00000260895.1|AP003071.1|lncRNA|chr11:69108852:69109094:+	0	+
#Deleted in new
chr11	69129454	69129600	ENSG00000162341.16|TPCN2|pc|chr11:69129454:69129600:+	0	+
#Deleted in new
chr11	69135434	69135532	ENSG00000162341.16|TPCN2|pc|chr11:69135434:69135532:+	0	+
#Deleted in new
chr11	69135434	69136264	ENSG00000162341.16|TPCN2|pc|chr11:69135434:69136264:+	0	+
#Deleted in new
chr11	69135434	69136296	ENSG00000162341.16|TPCN2|pc|chr11:69135434:69136296:+	0	+
#Deleted in new
chr11	69135434	69136316	ENSG00000162341.16|TPCN2|pc|chr11:69135434:69136316:+	0	+
#Deleted in new
chr11	69147227	69147740	ENSG00000261070.1|AP003071.2|lncRNA|chr11:69147227:69147740:-	0	-
#Deleted in new
chr11	69159445	69159740	ENSG00000284713.1|AP003071.5|pc|chr11:69159445:69159740:+	0	+
#Deleted in new
chr11	69159445	69159752	ENSG00000284713.1|AP003071.5|pc|chr11:69159445:69159752:+	0	+
#Deleted in new
chr11	69159445	69162440	ENSG00000162341.16|TPCN2|pc|chr11:69159445:69162440:+	0	+
#Deleted in new
chr11	69168328	69168439	ENSG00000261070.1|AP003071.2|lncRNA|chr11:69168328:69168439:-	0	-
#Deleted in new
chr11	69171198	69171564	ENSG00000261070.1|AP003071.2|lncRNA|chr11:69171198:69171564:-	0	-
#Deleted in new
chr1	169190642	169190705	ENSG00000143156.13|NME7|pc|chr1:169190642:169190705:-	0	-
#Deleted in new
chr1	169190642	169190710	ENSG00000143156.13|NME7|pc|chr1:169190642:169190710:-	0	-
#Deleted in new
chr1	1692448	1692644	ENSG00000189339.11|SLC35E2B|pc|chr1:1692448:1692644:-	0	-
#Deleted in new
chr1	1692448	1692709	ENSG00000189339.11|SLC35E2B|pc|chr1:1692448:1692709:-	0	-
#Deleted in new
chr1	1692448	1692724	ENSG00000189339.11|SLC35E2B|pc|chr1:1692448:1692724:-	0	-
#Deleted in new
chr1	1692448	1692728	ENSG00000189339.11|SLC35E2B|pc|chr1:1692448:1692728:-	0	-
#Deleted in new
chr11	6924497	6924575	ENSG00000283415.1|AC087280.2|lncRNA|chr11:6924497:6924575:-	0	-
#Deleted in new
chr11	6927661	6927807	ENSG00000149054.15|ZNF215|pc|chr11:6927661:6927807:+	0	+
#Deleted in new
chr11	69294137	69294576	ENSG00000172927.7|MYEOV|pc|chr11:69294137:69294576:+	0	+
#Deleted in new
chr11	69294150	69294576	ENSG00000172927.7|MYEOV|pc|chr11:69294150:69294576:+	0	+
#Deleted in new
chr11	69294154	69294576	ENSG00000172927.7|MYEOV|pc|chr11:69294154:69294576:+	0	+
#Deleted in new
chr11	69294157	69294576	ENSG00000172927.7|MYEOV|pc|chr11:69294157:69294576:+	0	+
#Deleted in new
chr11	69294163	69294576	ENSG00000172927.7|MYEOV|pc|chr11:69294163:69294576:+	0	+
#Deleted in new
chr11	69294173	69294576	ENSG00000172927.7|MYEOV|pc|chr11:69294173:69294576:+	0	+
#Deleted in new
chr11	69295232	69295495	ENSG00000172927.7|MYEOV|pc|chr11:69295232:69295495:+	0	+
#Deleted in new
chr11	69295326	69295495	ENSG00000172927.7|MYEOV|pc|chr11:69295326:69295495:+	0	+
#Deleted in new
chr11	69295400	69295495	ENSG00000172927.7|MYEOV|pc|chr11:69295400:69295495:+	0	+
#Deleted in new
chr11	69295585	69295639	ENSG00000172927.7|MYEOV|pc|chr11:69295585:69295639:+	0	+
#Deleted in new
chr11	69295591	69295662	ENSG00000172927.7|MYEOV|pc|chr11:69295591:69295662:+	0	+
#Partially deleted in new
chr11	69295591	69296885	ENSG00000172927.7|MYEOV|pc|chr11:69295591:69296885:+	0	+
#Deleted in new
chr11	69295639	69295850	ENSG00000172927.7|MYEOV|pc|chr11:69295639:69295850:+	0	+
#Deleted in new
chr11	69295899	69296171	ENSG00000172927.7|MYEOV|pc|chr11:69295899:69296171:+	0	+
#Deleted in new
chr11	69299273	69299428	ENSG00000172927.7|MYEOV|pc|chr11:69299273:69299428:+	0	+
#Deleted in new
chr1	169301969	169302053	ENSG00000143156.13|NME7|pc|chr1:169301969:169302053:-	0	-
#Deleted in new
chr1	169302306	169302374	ENSG00000143156.13|NME7|pc|chr1:169302306:169302374:-	0	-
#Deleted in new
chr1	169310664	169310771	ENSG00000235575.1|Z99758.1|lncRNA|chr1:169310664:169310771:+	0	+
#Deleted in new
chr11	69316831	69316925	ENSG00000172927.7|MYEOV|pc|chr11:69316831:69316925:+	0	+
#Partially deleted in new
chr1	169322218	169322479	ENSG00000235575.1|Z99758.1|lncRNA|chr1:169322218:169322479:+	0	+
#Deleted in new
chr11	69337359	69337436	ENSG00000172927.7|MYEOV|pc|chr11:69337359:69337436:+	0	+
#Deleted in new
chr11	69341509	69341677	ENSG00000172927.7|MYEOV|pc|chr11:69341509:69341677:+	0	+
#Deleted in new
chr11	69341509	69341678	ENSG00000172927.7|MYEOV|pc|chr11:69341509:69341678:+	0	+
#Deleted in new
chr11	69341509	69341682	ENSG00000172927.7|MYEOV|pc|chr11:69341509:69341682:+	0	+
#Deleted in new
chr11	69341555	69341678	ENSG00000172927.7|MYEOV|pc|chr11:69341555:69341678:+	0	+
#Deleted in new
chr11	693488	693644	ENSG00000177030.16|DEAF1|pc|chr11:693488:693644:-	0	-
#Deleted in new
chr11	69366742	69366866	ENSG00000172927.7|MYEOV|pc|chr11:69366742:69366866:+	0	+
#Deleted in new
chr11	69366742	69367003	ENSG00000172927.7|MYEOV|pc|chr11:69366742:69367003:+	0	+
#Deleted in new
chr11	69367038	69367112	ENSG00000172927.7|MYEOV|pc|chr11:69367038:69367112:+	0	+
#Deleted in new
chr11	69367294	69367415	ENSG00000172927.7|MYEOV|pc|chr11:69367294:69367415:+	0	+
#Deleted in new
chr11	69367294	69367726	ENSG00000172927.7|MYEOV|pc|chr11:69367294:69367726:+	0	+
#Deleted in new
chr11	69371462	69371547	ENSG00000260877.2|AP005233.2|lncRNA|chr11:69371462:69371547:+	0	+
#Deleted in new
chr11	69372225	69372512	ENSG00000260877.2|AP005233.2|lncRNA|chr11:69372225:69372512:+	0	+
#Deleted in new
chr1	16940771	16941434	ENSG00000058453.16|CROCC|pc|chr1:16940771:16941434:+	0	+
#Partially deleted in new
chr11	69414306	69415626	ENSG00000259854.1|AP005233.1|lncRNA|chr11:69414306:69415626:+	0	+
#Deleted in new
chr11	6941570	6941653	ENSG00000149054.15|ZNF215|pc|chr11:6941570:6941653:+	0	+
#Deleted in new
chr11	69415728	69416832	ENSG00000259854.1|AP005233.1|lncRNA|chr11:69415728:69416832:+	0	+
#Deleted in new
chr11	69425689	69425806	ENSG00000255980.1|AP000439.3|lncRNA|chr11:69425689:69425806:+	0	+
#Partially deleted in new
chr11	69427362	69429621	ENSG00000255980.1|AP000439.3|lncRNA|chr11:69427362:69429621:+	0	+
#Deleted in new
chr11	69438364	69438853	ENSG00000255606.1|AP000439.1|lncRNA|chr11:69438364:69438853:-	0	-
#Deleted in new
chr1	169451132	169451311	ENSG00000117477.12|CCDC181|pc|chr1:169451132:169451311:-	0	-
#Deleted in new
chr1	169452557	169452749	ENSG00000117477.12|CCDC181|pc|chr1:169452557:169452749:-	0	-
#Deleted in new
chr1	169454390	169454580	ENSG00000117477.12|CCDC181|pc|chr1:169454390:169454580:-	0	-
#Deleted in new
chr1	169454499	169454580	ENSG00000117477.12|CCDC181|pc|chr1:169454499:169454580:-	0	-
#Deleted in new
chr1	169459796	169459864	ENSG00000117477.12|CCDC181|pc|chr1:169459796:169459864:-	0	-
#Deleted in new
chr11	69467597	69467753	ENSG00000261347.1|AP000439.4|lncRNA|chr11:69467597:69467753:+	0	+
#Deleted in new
chr11	69477132	69477613	ENSG00000255774.1|AP000439.2|lncRNA|chr11:69477132:69477613:-	0	-
#Deleted in new
chr1	16951912	16951955	ENSG00000058453.16|CROCC|pc|chr1:16951912:16951955:+	0	+
#Deleted in new
chr11	6955689	6955782	ENSG00000149054.15|ZNF215|pc|chr11:6955689:6955782:+	0	+
#Partially deleted in new
chr11	6955689	6956105	ENSG00000149054.15|ZNF215|pc|chr11:6955689:6956105:+	0	+
#Partially deleted in new
chr11	6955689	6956110	ENSG00000149054.15|ZNF215|pc|chr11:6955689:6956110:+	0	+
#Partially deleted in new
chr11	6955689	6957837	ENSG00000149054.15|ZNF215|pc|chr11:6955689:6957837:+	0	+
#Partially deleted in new
chr11	6955689	6957848	ENSG00000149054.15|ZNF215|pc|chr11:6955689:6957848:+	0	+
#Deleted in new
chr11	69656599	69656652	ENSG00000149716.12|ORAOV1|pc|chr11:69656599:69656652:-	0	-
#Deleted in new
chr1	169662006	169662523	ENSG00000000460.16|C1orf112|pc|chr1:169662006:169662523:+	0	+
#Deleted in new
chr11	69665648	69666409	ENSG00000149716.12|ORAOV1|pc|chr11:69665648:69666409:-	0	-
#Deleted in new
chr11	69668177	69668398	ENSG00000149716.12|ORAOV1|pc|chr11:69668177:69668398:-	0	-
#Partially deleted in new
chr11	69674550	69674751	ENSG00000149716.12|ORAOV1|pc|chr11:69674550:69674751:-	0	-
#Partially deleted in new
chr11	69674550	69674766	ENSG00000149716.12|ORAOV1|pc|chr11:69674550:69674766:-	0	-
#Deleted in new
chr1	169683468	169683625	ENSG00000000460.16|C1orf112|pc|chr1:169683468:169683625:+	0	+
#Deleted in new
chr1	169683755	169683932	ENSG00000000460.16|C1orf112|pc|chr1:169683755:169683932:+	0	+
#Partially deleted in new
chr1	169764382	169764705	ENSG00000007908.15|SELE|pc|chr1:169764382:169764705:-	0	-
#Deleted in new
chr1	169783810	169783928	ENSG00000000460.16|C1orf112|pc|chr1:169783810:169783928:+	0	+
#Deleted in new
chr11	6984128	6984238	ENSG00000149054.15|ZNF215|pc|chr11:6984128:6984238:+	0	+
#Deleted in new
chr11	6984128	6984632	ENSG00000149054.15|ZNF215|pc|chr11:6984128:6984632:+	0	+
#Deleted in new
chr11	6988215	6988320	ENSG00000149054.15|ZNF215|pc|chr11:6988215:6988320:+	0	+
#Deleted in new
chr11	6988215	6988930	ENSG00000149054.15|ZNF215|pc|chr11:6988215:6988930:+	0	+
#Deleted in new
chr11	69909183	69909507	ENSG00000260348.1|AP007216.1|lncRNA|chr11:69909183:69909507:-	0	-
#Deleted in new
chr11	69910933	69910994	ENSG00000260348.1|AP007216.1|lncRNA|chr11:69910933:69910994:-	0	-
#Deleted in new
chr11	7001447	7001555	ENSG00000149050.9|ZNF214|pc|chr11:7001447:7001555:-	0	-
#Deleted in new
chr11	70014857	70015211	ENSG00000254605.1|AP003555.2|lncRNA|chr11:70014857:70015211:-	0	-
#Deleted in new
chr11	70014866	70015211	ENSG00000254605.1|AP003555.2|lncRNA|chr11:70014866:70015211:-	0	-
#Deleted in new
chr11	70015674	70015815	ENSG00000255191.1|AP003555.3|lncRNA|chr11:70015674:70015815:+	0	+
#Deleted in new
chr11	70016426	70016450	ENSG00000254605.1|AP003555.2|lncRNA|chr11:70016426:70016450:-	0	-
#Deleted in new
chr11	70018231	70018355	ENSG00000254605.1|AP003555.2|lncRNA|chr11:70018231:70018355:-	0	-
#Partially deleted in new
chr11	70020882	70021059	ENSG00000254605.1|AP003555.2|lncRNA|chr11:70020882:70021059:-	0	-
#Deleted in new
chr1	170041676	170041840	ENSG00000075945.12|KIFAP3|pc|chr1:170041676:170041840:-	0	-
#Deleted in new
chr11	70056229	70056535	ENSG00000248844.6|AP003555.1|lncRNA|chr11:70056229:70056535:-	0	-
#Deleted in new
chr1	170067503	170068917	ENSG00000075945.12|KIFAP3|pc|chr1:170067503:170068917:-	0	-
#Deleted in new
chr11	70072433	70072939	ENSG00000254417.1|ANO1-AS2|lncRNA|chr11:70072433:70072939:-	0	-
#Deleted in new
chr11	70072739	70072939	ENSG00000254417.1|ANO1-AS2|lncRNA|chr11:70072739:70072939:-	0	-
#Deleted in new
chr11	70149548	70149623	ENSG00000255143.1|AP000879.2|lncRNA|chr11:70149548:70149623:+	0	+
#Deleted in new
chr11	7015819	7016024	ENSG00000149050.9|ZNF214|pc|chr11:7015819:7016024:-	0	-
#Deleted in new
chr1	170161605	170161668	ENSG00000203740.3|METTL11B|pc|chr1:170161605:170161668:+	0	+
#Deleted in new
chr11	7019682	7019745	ENSG00000149050.9|ZNF214|pc|chr11:7019682:7019745:-	0	-
#Deleted in new
chr11	7020072	7020235	ENSG00000149050.9|ZNF214|pc|chr11:7020072:7020235:-	0	-
#Deleted in new
chr11	7020072	7020314	ENSG00000149050.9|ZNF214|pc|chr11:7020072:7020314:-	0	-
#Deleted in new
chr11	7020072	7020342	ENSG00000149050.9|ZNF214|pc|chr11:7020072:7020342:-	0	-
#Deleted in new
chr11	7020072	7020368	ENSG00000149050.9|ZNF214|pc|chr11:7020072:7020368:-	0	-
#Deleted in new
chr11	7020445	7020770	ENSG00000158077.4|NLRP14|pc|chr11:7020445:7020770:+	0	+
#Partially deleted in new
chr11	70206132	70207390	ENSG00000168040.4|FADD|pc|chr11:70206132:70207390:+	0	+
#Partially deleted in new
chr11	70206290	70206934	ENSG00000254721.1|AP000879.1|lncRNA|chr11:70206290:70206934:-	0	-
#Deleted in new
chr11	70206570	70206969	ENSG00000254721.1|AP000879.1|lncRNA|chr11:70206570:70206969:-	0	-
#Deleted in new
chr11	70207058	70207390	ENSG00000254721.1|AP000879.1|lncRNA|chr11:70207058:70207390:-	0	-
#Deleted in new
chr11	70207067	70207387	ENSG00000254721.1|AP000879.1|lncRNA|chr11:70207067:70207387:-	0	-
#Deleted in new
chr1	170278829	170278932	ENSG00000224286.5|LINC01142|lncRNA|chr1:170278829:170278932:-	0	-
#Deleted in new
chr11	70282366	70282412	ENSG00000254604.1|AP002336.2|lncRNA|chr11:70282366:70282412:-	0	-
#Deleted in new
chr1	170284138	170284208	ENSG00000224286.5|LINC01142|lncRNA|chr1:170284138:170284208:-	0	-
#Split in new
chr1	1703087	1703940	ENSG00000008128.22|CDK11A|pc|chr1:1703087:1703940:-	0	-
#Deleted in new
chr11	70319927	70320198	ENSG00000254484.1|AP002336.1|lncRNA|chr11:70319927:70320198:+	0	+
#Deleted in new
chr11	70321264	70321415	ENSG00000254484.1|AP002336.1|lncRNA|chr11:70321264:70321415:+	0	+
#Deleted in new
chr11	70327099	70327209	ENSG00000255539.1|AP002336.3|lncRNA|chr11:70327099:70327209:-	0	-
#Deleted in new
chr11	70327553	70327714	ENSG00000131626.16|PPFIA1|pc|chr11:70327553:70327714:+	0	+
#Deleted in new
chr11	70334351	70334632	ENSG00000131626.16|PPFIA1|pc|chr11:70334351:70334632:+	0	+
#Deleted in new
chr11	70340976	70341097	ENSG00000131626.16|PPFIA1|pc|chr11:70340976:70341097:+	0	+
#Deleted in new
chr11	70340995	70341097	ENSG00000131626.16|PPFIA1|pc|chr11:70340995:70341097:+	0	+
#Deleted in new
chr11	70341006	70341097	ENSG00000131626.16|PPFIA1|pc|chr11:70341006:70341097:+	0	+
#Deleted in new
chr11	70341872	70342143	ENSG00000131626.16|PPFIA1|pc|chr11:70341872:70342143:+	0	+
#Deleted in new
chr11	70345914	70346009	ENSG00000131626.16|PPFIA1|pc|chr11:70345914:70346009:+	0	+
#Duplicated in new
chr1	1703475	1703624	ENSG00000008128.22|CDK11A|pc|chr1:1703475:1703624:-	0	-
#Duplicated in new
chr1	1703475	1703624	ENSG00000268575.1|AL031282.2|lncRNA|chr1:1703475:1703624:-	0	-
#Deleted in new
chr11	70358197	70358249	ENSG00000254495.1|AP000487.2|lncRNA|chr11:70358197:70358249:-	0	-
#Deleted in new
chr11	70358335	70358677	ENSG00000254495.1|AP000487.2|lncRNA|chr11:70358335:70358677:-	0	-
#Deleted in new
chr11	70362875	70363368	ENSG00000254604.1|AP002336.2|lncRNA|chr11:70362875:70363368:-	0	-
#Deleted in new
chr11	70367505	70367629	ENSG00000131626.16|PPFIA1|pc|chr11:70367505:70367629:+	0	+
#Deleted in new
chr11	70381090	70381277	ENSG00000246889.2|AP000487.1|lncRNA|chr11:70381090:70381277:-	0	-
#Duplicated in new
chr1	1703823	1703995	ENSG00000008128.22|CDK11A|pc|chr1:1703823:1703995:-	0	-
#Duplicated in new
chr1	1703823	1703995	ENSG00000268575.1|AL031282.2|lncRNA|chr1:1703823:1703995:-	0	-
#Duplicated in new
chr1	1703867	1703995	ENSG00000008128.22|CDK11A|pc|chr1:1703867:1703995:-	0	-
#Deleted in new
chr11	70398097	70398302	ENSG00000246889.2|AP000487.1|lncRNA|chr11:70398097:70398302:-	0	-
#Deleted in new
chr11	70398097	70398362	ENSG00000246889.2|AP000487.1|lncRNA|chr11:70398097:70398362:-	0	-
#Partially deleted in new
chr11	70398097	70398488	ENSG00000246889.2|AP000487.1|lncRNA|chr11:70398097:70398488:-	0	-
#Deleted in new
chr11	70405264	70405361	ENSG00000085733.15|CTTN|pc|chr11:70405264:70405361:+	0	+
#Partially deleted in new
chr11	70415662	70416204	ENSG00000085733.15|CTTN|pc|chr11:70415662:70416204:+	0	+
#Partially deleted in new
chr11	70477569	70477592	ENSG00000227726.1|AP001271.1|lncRNA|chr11:70477569:70477592:-	0	-
#Partially deleted in new
chr11	70566386	70566624	ENSG00000162105.17|SHANK2|pc|chr11:70566386:70566624:-	0	-
#Deleted in new
chr11	70570561	70570713	ENSG00000162105.17|SHANK2|pc|chr11:70570561:70570713:-	0	-
#Deleted in new
chr11	70571292	70571341	ENSG00000162105.17|SHANK2|pc|chr11:70571292:70571341:-	0	-
#Deleted in new
chr1	170598853	170599015	ENSG00000235303.1|AL023495.1|lncRNA|chr1:170598853:170599015:+	0	+
#Deleted in new
chr11	70603303	70604859	ENSG00000279459.1|AP001271.2|lncRNA|chr11:70603303:70604859:+	0	+
#Deleted in new
chr11	70631093	70631234	ENSG00000226627.1|SHANK2-AS1|lncRNA|chr11:70631093:70631234:+	0	+
#Deleted in new
chr11	70631776	70631930	ENSG00000226627.1|SHANK2-AS1|lncRNA|chr11:70631776:70631930:+	0	+
#Deleted in new
chr11	70633533	70635490	ENSG00000226627.1|SHANK2-AS1|lncRNA|chr11:70633533:70635490:+	0	+
#Deleted in new
chr1	170639108	170639797	ENSG00000235303.1|AL023495.1|lncRNA|chr1:170639108:170639797:+	0	+
#Partially deleted in new
chr11	70647340	70647562	ENSG00000236262.1|SHANK2-AS2|lncRNA|chr11:70647340:70647562:+	0	+
#Partially deleted in new
chr11	70667838	70669643	ENSG00000162105.17|SHANK2|pc|chr11:70667838:70669643:-	0	-
#Partially deleted in new
chr1	17082544	17083138	ENSG00000117115.12|PADI2|pc|chr1:17082544:17083138:-	0	-
#Partially deleted in new
chr1	17083235	17083426	ENSG00000117115.12|PADI2|pc|chr1:17083235:17083426:-	0	-
#Partially deleted in new
chr11	708574	708643	ENSG00000177106.14|EPS8L2|pc|chr11:708574:708643:+	0	+
#Deleted in new
chr11	70862789	70862867	ENSG00000171671.6|SHANK2-AS3|lncRNA|chr11:70862789:70862867:+	0	+
#Deleted in new
chr11	70863284	70863561	ENSG00000171671.6|SHANK2-AS3|lncRNA|chr11:70863284:70863561:+	0	+
#Deleted in new
chr11	70907634	70908092	ENSG00000162105.17|SHANK2|pc|chr11:70907634:70908092:-	0	-
#Deleted in new
chr1	170945519	170945581	ENSG00000117501.14|MROH9|pc|chr1:170945519:170945581:+	0	+
#Deleted in new
chr11	70951005	70951071	ENSG00000162105.17|SHANK2|pc|chr11:70951005:70951071:-	0	-
#Deleted in new
chr11	70952701	70952821	ENSG00000162105.17|SHANK2|pc|chr11:70952701:70952821:-	0	-
#Deleted in new
chr1	171099804	171100413	ENSG00000007933.12|FMO3|pc|chr1:171099804:171100413:+	0	+
#Deleted in new
chr1	171099808	171100735	ENSG00000007933.12|FMO3|pc|chr1:171099808:171100735:+	0	+
#Deleted in new
chr1	171100761	171101206	ENSG00000007933.12|FMO3|pc|chr1:171100761:171101206:+	0	+
#Deleted in new
chr1	171101079	171101206	ENSG00000007933.12|FMO3|pc|chr1:171101079:171101206:+	0	+
#Deleted in new
chr11	71174692	71174844	ENSG00000162105.17|SHANK2|pc|chr11:71174692:71174844:-	0	-
#Deleted in new
chr1	171223996	171224284	ENSG00000225243.5|AL021026.1|lncRNA|chr1:171223996:171224284:-	0	-
#Deleted in new
chr11	71224696	71224762	ENSG00000162105.17|SHANK2|pc|chr11:71224696:71224762:-	0	-
#Deleted in new
chr11	71224696	71224796	ENSG00000162105.17|SHANK2|pc|chr11:71224696:71224796:-	0	-
#Deleted in new
chr11	71226564	71226669	ENSG00000162105.17|SHANK2|pc|chr11:71226564:71226669:-	0	-
#Deleted in new
chr1	171227650	171227725	ENSG00000225243.5|AL021026.1|lncRNA|chr1:171227650:171227725:-	0	-
#Deleted in new
chr1	171227650	171227788	ENSG00000225243.5|AL021026.1|lncRNA|chr1:171227650:171227788:-	0	-
#Deleted in new
chr11	71240795	71240924	ENSG00000162105.17|SHANK2|pc|chr11:71240795:71240924:-	0	-
#Deleted in new
chr1	171247579	171247723	ENSG00000231424.2|AL445673.1|lncRNA|chr1:171247579:171247723:-	0	-
#Deleted in new
chr1	171251522	171251794	ENSG00000231424.2|AL445673.1|lncRNA|chr1:171251522:171251794:-	0	-
#Deleted in new
chr1	171314207	171314413	ENSG00000076258.9|FMO4|pc|chr1:171314207:171314413:+	0	+
#Deleted in new
chr1	171314233	171314413	ENSG00000076258.9|FMO4|pc|chr1:171314233:171314413:+	0	+
#Deleted in new
chr1	171341944	171342084	ENSG00000076258.9|FMO4|pc|chr1:171341944:171342084:+	0	+
#Deleted in new
chr11	71428192	71428852	ENSG00000172893.15|DHCR7|pc|chr11:71428192:71428852:-	0	-
#Deleted in new
chr11	71447609	71447726	ENSG00000172893.15|DHCR7|pc|chr11:71447609:71447726:-	0	-
#Deleted in new
chr11	71447609	71447734	ENSG00000172893.15|DHCR7|pc|chr11:71447609:71447734:-	0	-
#Deleted in new
chr11	71447609	71448078	ENSG00000172893.15|DHCR7|pc|chr11:71447609:71448078:-	0	-
#Deleted in new
chr11	71451689	71452157	ENSG00000254682.1|AP002387.1|lncRNA|chr11:71451689:71452157:+	0	+
#Deleted in new
chr11	71452693	71452868	ENSG00000172893.15|DHCR7|pc|chr11:71452693:71452868:-	0	-
#Partially deleted in new
chr11	71455109	71455460	ENSG00000172890.11|NADSYN1|pc|chr11:71455109:71455460:+	0	+
#Deleted in new
chr11	71459674	71460075	ENSG00000172890.11|NADSYN1|pc|chr11:71459674:71460075:+	0	+
#Deleted in new
chr11	71460040	71460213	ENSG00000172890.11|NADSYN1|pc|chr11:71460040:71460213:+	0	+
#Deleted in new
chr11	71460721	71460947	ENSG00000172890.11|NADSYN1|pc|chr11:71460721:71460947:+	0	+
#Partially deleted in new
chr11	71464052	71464508	ENSG00000172890.11|NADSYN1|pc|chr11:71464052:71464508:+	0	+
#Deleted in new
chr11	71466723	71466766	ENSG00000172890.11|NADSYN1|pc|chr11:71466723:71466766:+	0	+
#Partially deleted in new
chr11	71474394	71475622	ENSG00000172890.11|NADSYN1|pc|chr11:71474394:71475622:+	0	+
#Deleted in new
chr11	71476032	71477438	ENSG00000172890.11|NADSYN1|pc|chr11:71476032:71477438:+	0	+
#Deleted in new
chr11	71476200	71477225	ENSG00000172890.11|NADSYN1|pc|chr11:71476200:71477225:+	0	+
#Deleted in new
chr11	71477346	71477438	ENSG00000172890.11|NADSYN1|pc|chr11:71477346:71477438:+	0	+
#Partially deleted in new
chr11	71478394	71479082	ENSG00000172890.11|NADSYN1|pc|chr11:71478394:71479082:+	0	+
#Deleted in new
chr11	71479293	71480274	ENSG00000172890.11|NADSYN1|pc|chr11:71479293:71480274:+	0	+
#Deleted in new
chr11	71480148	71480274	ENSG00000172890.11|NADSYN1|pc|chr11:71480148:71480274:+	0	+
#Deleted in new
chr11	71480151	71480274	ENSG00000172890.11|NADSYN1|pc|chr11:71480151:71480274:+	0	+
#Deleted in new
chr11	71480218	71480274	ENSG00000172890.11|NADSYN1|pc|chr11:71480218:71480274:+	0	+
#Partially deleted in new
chr11	71496434	71497611	ENSG00000172890.11|NADSYN1|pc|chr11:71496434:71497611:+	0	+
#Partially deleted in new
chr11	71498351	71500035	ENSG00000172890.11|NADSYN1|pc|chr11:71498351:71500035:+	0	+
#Deleted in new
chr11	71503089	71503303	ENSG00000172890.11|NADSYN1|pc|chr11:71503089:71503303:+	0	+
#Split in new
chr11	71503863	71505874	ENSG00000172890.11|NADSYN1|pc|chr11:71503863:71505874:+	0	+
#Deleted in new
chr11	71504065	71504478	ENSG00000172890.11|NADSYN1|pc|chr11:71504065:71504478:+	0	+
#Deleted in new
chr11	71505567	71505872	ENSG00000172890.11|NADSYN1|pc|chr11:71505567:71505872:+	0	+
#Partially deleted in new
chr1	171509559	171513172	ENSG00000117523.15|PRRC2C|pc|chr1:171509559:171513172:+	0	+
#Deleted in new
chr11	71521089	71521204	ENSG00000172890.11|NADSYN1|pc|chr11:71521089:71521204:+	0	+
#Deleted in new
chr1	171522514	171522556	ENSG00000117523.15|PRRC2C|pc|chr1:171522514:171522556:+	0	+
#Deleted in new
chr11	71523995	71524107	ENSG00000172890.11|NADSYN1|pc|chr11:71523995:71524107:+	0	+
#Duplicated in new
chr11	71565562	71566738	ENSG00000204572.9|KRTAP5-10|pc|chr11:71565562:71566738:+	0	+
#Deleted in new
chr11	71598996	71599325	ENSG00000204571.6|KRTAP5-11|pc|chr11:71598996:71599325:-	0	-
#Deleted in new
chr1	171600620	171601080	ENSG00000283683.1|MYOCOS|pc|chr1:171600620:171601080:+	0	+
#Deleted in new
chr1	171604119	171604377	ENSG00000283683.1|MYOCOS|pc|chr1:171604119:171604377:+	0	+
#Deleted in new
chr1	171614797	171615005	ENSG00000283683.1|MYOCOS|pc|chr1:171614797:171615005:+	0	+
#Deleted in new
chr1	171643387	171643391	ENSG00000034971.16|MYOC|pc|chr1:171643387:171643391:-	0	-
#Deleted in new
chr11	71701267	71701485	ENSG00000254972.1|AP003498.1|lncRNA|chr11:71701267:71701485:-	0	-
#Deleted in new
chr11	71704176	71704260	ENSG00000254972.1|AP003498.1|lncRNA|chr11:71704176:71704260:-	0	-
#Deleted in new
chr11	71705359	71705404	ENSG00000254972.1|AP003498.1|lncRNA|chr11:71705359:71705404:-	0	-
#Partially deleted in new
chr11	71796016	71796940	ENSG00000158483.15|FAM86C1|pc|chr11:71796016:71796940:+	0	+
#Partially deleted in new
chr11	71799560	71800099	ENSG00000158483.15|FAM86C1|pc|chr11:71799560:71800099:+	0	+
#Partially deleted in new
chr11	71799560	71800103	ENSG00000158483.15|FAM86C1|pc|chr11:71799560:71800103:+	0	+
#Partially deleted in new
chr11	71799560	71800724	ENSG00000158483.15|FAM86C1|pc|chr11:71799560:71800724:+	0	+
#Deleted in new
chr11	71807590	71807656	ENSG00000248671.7|ALG1L9P|lncRNA|chr11:71807590:71807656:-	0	-
#Deleted in new
chr11	71807592	71807656	ENSG00000248671.7|ALG1L9P|lncRNA|chr11:71807592:71807656:-	0	-
#Deleted in new
chr11	71810300	71811948	ENSG00000248671.7|ALG1L9P|lncRNA|chr11:71810300:71811948:-	0	-
#Deleted in new
chr11	71813342	71813446	ENSG00000248671.7|ALG1L9P|lncRNA|chr11:71813342:71813446:-	0	-
#Deleted in new
chr11	71813342	71813845	ENSG00000248671.7|ALG1L9P|lncRNA|chr11:71813342:71813845:-	0	-
#Deleted in new
chr11	71813342	71813859	ENSG00000248671.7|ALG1L9P|lncRNA|chr11:71813342:71813859:-	0	-
#Split in new
chr11	71814044	71817096	ENSG00000214534.5|ZNF705E|pc|chr11:71814044:71817096:-	0	-
#Duplicated in new
chr11	71816909	71817096	ENSG00000248671.7|ALG1L9P|lncRNA|chr11:71816909:71817096:-	0	-
#Deleted in new
chr11	71818152	71818235	ENSG00000214534.5|ZNF705E|pc|chr11:71818152:71818235:-	0	-
#Deleted in new
chr11	71818152	71818238	ENSG00000248671.7|ALG1L9P|lncRNA|chr11:71818152:71818238:-	0	-
#Deleted in new
chr11	71818772	71818868	ENSG00000214534.5|ZNF705E|pc|chr11:71818772:71818868:-	0	-
#Deleted in new
chr11	71821464	71821548	ENSG00000214534.5|ZNF705E|pc|chr11:71821464:71821548:-	0	-
#Deleted in new
chr11	71837023	71837172	ENSG00000184276.2|DEFB108B|pc|chr11:71837023:71837172:+	0	+
#Deleted in new
chr11	71837398	71837562	ENSG00000184276.2|DEFB108B|pc|chr11:71837398:71837562:+	0	+
#Deleted in new
chr11	71837398	71837710	ENSG00000184276.2|DEFB108B|pc|chr11:71837398:71837710:+	0	+
#Deleted in new
chr11	71865508	71865854	ENSG00000254469.7|AP002495.1|pc|chr11:71865508:71865854:-	0	-
#Deleted in new
chr1	17189782	17189930	ENSG00000204362.6|AL590644.1|lncRNA|chr1:17189782:17189930:+	0	+
#Deleted in new
chr1	17189788	17189930	ENSG00000204362.6|AL590644.1|lncRNA|chr1:17189788:17189930:+	0	+
#Deleted in new
chr11	71917164	71917238	ENSG00000254469.7|AP002495.1|pc|chr11:71917164:71917238:-	0	-
#Deleted in new
chr11	71917190	71917307	ENSG00000254469.7|AP002495.1|pc|chr11:71917190:71917307:-	0	-
#Deleted in new
chr11	71925932	71926104	ENSG00000254469.7|AP002495.1|pc|chr11:71925932:71926104:-	0	-
#Deleted in new
chr11	71927577	71928035	ENSG00000254469.7|AP002495.1|pc|chr11:71927577:71928035:-	0	-
#Deleted in new
chr1	17195019	17195133	ENSG00000282843.1|AL590644.3|lncRNA|chr1:17195019:17195133:-	0	-
#Deleted in new
chr1	17195442	17195601	ENSG00000204362.6|AL590644.1|lncRNA|chr1:17195442:17195601:+	0	+
#Deleted in new
chr11	71962151	71962289	ENSG00000137522.17|RNF121|pc|chr11:71962151:71962289:+	0	+
#Deleted in new
chr1	17196299	17196387	ENSG00000204362.6|AL590644.1|lncRNA|chr1:17196299:17196387:+	0	+
#Partially deleted in new
chr1	17196528	17196754	ENSG00000282843.1|AL590644.3|lncRNA|chr1:17196528:17196754:-	0	-
#Deleted in new
chr11	71978085	71978235	ENSG00000137522.17|RNF121|pc|chr11:71978085:71978235:+	0	+
#Deleted in new
chr11	72049418	72049539	ENSG00000137497.17|NUMA1|pc|chr11:72049418:72049539:-	0	-
#Deleted in new
chr11	72050661	72050833	ENSG00000137497.17|NUMA1|pc|chr11:72050661:72050833:-	0	-
#Deleted in new
chr11	72062588	72062686	ENSG00000137497.17|NUMA1|pc|chr11:72062588:72062686:-	0	-
#Deleted in new
chr11	72068495	72068617	ENSG00000137497.17|NUMA1|pc|chr11:72068495:72068617:-	0	-
#Deleted in new
chr11	72076567	72076757	ENSG00000137497.17|NUMA1|pc|chr11:72076567:72076757:-	0	-
#Partially deleted in new
chr11	72094437	72094777	ENSG00000149357.9|LAMTOR1|pc|chr11:72094437:72094777:-	0	-
#Partially deleted in new
chr11	72095378	72096890	ENSG00000184154.13|LRTOMT|pc|chr11:72095378:72096890:+	0	+
#Partially deleted in new
chr11	72095378	72096895	ENSG00000184154.13|LRTOMT|pc|chr11:72095378:72096895:+	0	+
#Deleted in new
chr11	72095693	72095839	ENSG00000184154.13|LRTOMT|pc|chr11:72095693:72095839:+	0	+
#Deleted in new
chr11	72096722	72096895	ENSG00000184154.13|LRTOMT|pc|chr11:72096722:72096895:+	0	+
#Partially deleted in new
chr11	72106377	72107605	ENSG00000110200.8|ANAPC15|pc|chr11:72106377:72107605:-	0	-
#Deleted in new
chr11	72107158	72107605	ENSG00000110200.8|ANAPC15|pc|chr11:72107158:72107605:-	0	-
#Deleted in new
chr11	72114868	72114925	ENSG00000110203.8|FOLR3|pc|chr11:72114868:72114925:+	0	+
#Deleted in new
chr1	172132888	172133392	ENSG00000197959.13|DNM3|pc|chr1:172132888:172133392:+	0	+
#Deleted in new
chr11	72163321	72163379	ENSG00000204971.3|AP000812.1|lncRNA|chr11:72163321:72163379:-	0	-
#Deleted in new
chr11	72198512	72198736	ENSG00000204971.3|AP000812.1|lncRNA|chr11:72198512:72198736:-	0	-
#Deleted in new
chr11	72209046	72209241	ENSG00000204971.3|AP000812.1|lncRNA|chr11:72209046:72209241:-	0	-
#Deleted in new
chr11	72217336	72217423	ENSG00000165457.13|FOLR2|pc|chr11:72217336:72217423:+	0	+
#Deleted in new
chr11	7230409	7230863	ENSG00000255179.1|AC027804.1|lncRNA|chr11:7230409:7230863:+	0	+
#Deleted in new
chr11	72363382	72363555	ENSG00000255672.1|AP002892.1|lncRNA|chr11:72363382:72363555:+	0	+
#Deleted in new
chr1	172370188	172370311	ENSG00000135845.9|PIGC|pc|chr1:172370188:172370311:-	0	-
#Deleted in new
chr11	7238777	7238916	ENSG00000170743.16|SYT9|pc|chr11:7238777:7238916:+	0	+
#Deleted in new
chr1	172428793	172428830	ENSG00000180999.10|C1orf105|pc|chr1:172428793:172428830:+	0	+
#Deleted in new
chr1	172431079	172431287	ENSG00000180999.10|C1orf105|pc|chr1:172431079:172431287:+	0	+
#Partially deleted in new
chr1	172465606	172465681	ENSG00000180999.10|C1orf105|pc|chr1:172465606:172465681:+	0	+
#Deleted in new
chr1	1724837	1725422	ENSG00000215790.6|SLC35E2|pc|chr1:1724837:1725422:-	0	-
#Deleted in new
chr1	172556	172688	ENSG00000241860.6|AL627309.5|lncRNA|chr1:172556:172688:-	0	-
#Deleted in new
chr11	72571027	72573229	ENSG00000227467.3|LINC01537|lncRNA|chr11:72571027:72573229:+	0	+
#Deleted in new
chr11	72587800	72587979	ENSG00000256633.1|AP005019.1|lncRNA|chr11:72587800:72587979:+	0	+
#Partially deleted in new
chr1	172752585	172752924	ENSG00000279061.1|Z98043.1|lncRNA|chr1:172752585:172752924:+	0	+
#Partially deleted in new
chr11	72755328	72755753	ENSG00000214530.8|STARD10|pc|chr11:72755328:72755753:-	0	-
#Partially deleted in new
chr11	72815886	72816349	ENSG00000168010.10|ATG16L2|pc|chr11:72815886:72816349:+	0	+
#Deleted in new
chr1	173004281	173004435	ENSG00000224228.2|AL031599.1|lncRNA|chr1:173004281:173004435:+	0	+
#Deleted in new
chr1	173023497	173023573	ENSG00000224228.2|AL031599.1|lncRNA|chr1:173023497:173023573:+	0	+
#Deleted in new
chr1	173063872	173064015	ENSG00000224228.2|AL031599.1|lncRNA|chr1:173063872:173064015:+	0	+
#Deleted in new
chr11	73077617	73077670	ENSG00000137478.14|FCHSD2|pc|chr11:73077617:73077670:-	0	-
#Deleted in new
chr1	173174299	173174574	ENSG00000226375.1|AL022310.1|lncRNA|chr1:173174299:173174574:-	0	-
#Partially deleted in new
chr1	173175088	173175503	ENSG00000226375.1|AL022310.1|lncRNA|chr1:173175088:173175503:-	0	-
#Deleted in new
chr11	73181171	73181696	ENSG00000256568.1|AP002761.2|lncRNA|chr11:73181171:73181696:+	0	+
#Deleted in new
chr1	1731827	1732523	ENSG00000215790.6|SLC35E2|pc|chr1:1731827:1732523:-	0	-
#Deleted in new
chr11	73214997	73215188	ENSG00000215841.3|AP002761.1|lncRNA|chr11:73214997:73215188:-	0	-
#Deleted in new
chr1	1732241	1732523	ENSG00000215790.6|SLC35E2|pc|chr1:1732241:1732523:-	0	-
#Deleted in new
chr1	17334323	17334796	ENSG00000159339.13|PADI4|pc|chr1:17334323:17334796:+	0	+
#Deleted in new
chr11	73410485	73410672	ENSG00000256448.5|AP000763.3|lncRNA|chr11:73410485:73410672:+	0	+
#Deleted in new
chr11	73410485	73410682	ENSG00000256448.5|AP000763.3|lncRNA|chr11:73410485:73410682:+	0	+
#Deleted in new
chr1	173441918	173442097	ENSG00000203739.3|AL645568.1|lncRNA|chr1:173441918:173442097:-	0	-
#Deleted in new
chr1	173460377	173461362	ENSG00000203739.3|AL645568.1|lncRNA|chr1:173460377:173461362:-	0	-
#Deleted in new
chr1	1735203	1735620	ENSG00000215790.6|SLC35E2|pc|chr1:1735203:1735620:-	0	-
#Partially deleted in new
chr1	1735203	1737688	ENSG00000268575.1|AL031282.2|lncRNA|chr1:1735203:1737688:-	0	-
#Partially deleted in new
chr1	173555250	173555318	ENSG00000238272.1|AL139142.1|lncRNA|chr1:173555250:173555318:+	0	+
#Deleted in new
chr1	173571501	173571728	ENSG00000162753.11|SLC9C2|pc|chr1:173571501:173571728:-	0	-
#Deleted in new
chr1	173596417	173596678	ENSG00000162753.11|SLC9C2|pc|chr1:173596417:173596678:-	0	-
#Deleted in new
chr1	173612623	173612772	ENSG00000238272.1|AL139142.1|lncRNA|chr1:173612623:173612772:+	0	+
#Partially deleted in new
chr1	173657625	173659433	ENSG00000183831.6|ANKRD45|pc|chr1:173657625:173659433:-	0	-
#Deleted in new
chr1	173669816	173669832	ENSG00000183831.6|ANKRD45|pc|chr1:173669816:173669832:-	0	-
#Deleted in new
chr1	173669816	173669862	ENSG00000183831.6|ANKRD45|pc|chr1:173669816:173669862:-	0	-
#Deleted in new
chr11	73704163	73704215	ENSG00000175582.19|RAB6A|pc|chr11:73704163:73704215:-	0	-
#Deleted in new
chr11	73722348	73722476	ENSG00000255928.1|AP002993.1|lncRNA|chr11:73722348:73722476:+	0	+
#Deleted in new
chr11	73722612	73722694	ENSG00000255928.1|AP002993.1|lncRNA|chr11:73722612:73722694:+	0	+
#Partially deleted in new
chr11	73729463	73730823	ENSG00000175582.19|RAB6A|pc|chr11:73729463:73730823:-	0	-
#Partially deleted in new
chr11	73789334	73789490	ENSG00000175581.13|MRPL48|pc|chr11:73789334:73789490:+	0	+
#Deleted in new
chr1	173806438	173806576	ENSG00000120334.15|CENPL|pc|chr1:173806438:173806576:-	0	-
#Deleted in new
chr1	173806458	173806576	ENSG00000120334.15|CENPL|pc|chr1:173806458:173806576:-	0	-
#Deleted in new
chr11	73817822	73817947	ENSG00000175581.13|MRPL48|pc|chr11:73817822:73817947:+	0	+
#Partially deleted in new
chr1	173821808	173824019	ENSG00000120334.15|CENPL|pc|chr1:173821808:173824019:-	0	-
#Deleted in new
chr11	73823012	73823070	ENSG00000175581.13|MRPL48|pc|chr11:73823012:73823070:+	0	+
#Deleted in new
chr11	73842112	73843367	ENSG00000175581.13|MRPL48|pc|chr11:73842112:73843367:+	0	+
#Deleted in new
chr11	73843246	73843367	ENSG00000175581.13|MRPL48|pc|chr11:73843246:73843367:+	0	+
#Deleted in new
chr1	173851835	173852018	ENSG00000117593.9|DARS2|pc|chr1:173851835:173852018:+	0	+
#Deleted in new
chr1	173863247	173863941	ENSG00000270084.1|GAS5-AS1|lncRNA|chr1:173863247:173863941:+	0	+
#Partially deleted in new
chr1	173863899	173864075	ENSG00000234741.7|GAS5|lncRNA|chr1:173863899:173864075:-	0	-
#Partially deleted in new
chr1	173863900	173864075	ENSG00000234741.7|GAS5|lncRNA|chr1:173863900:173864075:-	0	-
#Partially deleted in new
chr1	173863901	173864075	ENSG00000234741.7|GAS5|lncRNA|chr1:173863901:173864075:-	0	-
#Partially deleted in new
chr1	173863903	173864075	ENSG00000234741.7|GAS5|lncRNA|chr1:173863903:173864075:-	0	-
#Partially deleted in new
chr1	173863910	173864075	ENSG00000234741.7|GAS5|lncRNA|chr1:173863910:173864075:-	0	-
#Partially deleted in new
chr1	173863953	173864075	ENSG00000234741.7|GAS5|lncRNA|chr1:173863953:173864075:-	0	-
#Partially deleted in new
chr1	173864015	173864075	ENSG00000234741.7|GAS5|lncRNA|chr1:173864015:173864075:-	0	-
#Partially deleted in new
chr1	173864033	173864075	ENSG00000234741.7|GAS5|lncRNA|chr1:173864033:173864075:-	0	-
#Partially deleted in new
chr1	173864483	173864704	ENSG00000234741.7|GAS5|lncRNA|chr1:173864483:173864704:-	0	-
#Deleted in new
chr1	173864674	173864704	ENSG00000234741.7|GAS5|lncRNA|chr1:173864674:173864704:-	0	-
#Partially deleted in new
chr1	173864674	173864871	ENSG00000234741.7|GAS5|lncRNA|chr1:173864674:173864871:-	0	-
#Partially deleted in new
chr1	173864954	173865282	ENSG00000234741.7|GAS5|lncRNA|chr1:173864954:173865282:-	0	-
#Partially deleted in new
chr1	173866990	173867689	ENSG00000234741.7|GAS5|lncRNA|chr1:173866990:173867689:-	0	-
#Partially deleted in new
chr1	173867154	173867729	ENSG00000234741.7|GAS5|lncRNA|chr1:173867154:173867729:-	0	-
#Deleted in new
chr11	73874420	73874475	ENSG00000181924.6|COA4|pc|chr11:73874420:73874475:-	0	-
#Partially deleted in new
chr11	73875758	73876119	ENSG00000181924.6|COA4|pc|chr11:73875758:73876119:-	0	-
#Deleted in new
chr11	73878776	73878819	ENSG00000175575.12|PAAF1|pc|chr11:73878776:73878819:+	0	+
#Deleted in new
chr11	73878778	73878819	ENSG00000175575.12|PAAF1|pc|chr11:73878778:73878819:+	0	+
#Partially deleted in new
chr11	73878778	73880703	ENSG00000175575.12|PAAF1|pc|chr11:73878778:73880703:+	0	+
#Deleted in new
chr11	73878782	73878819	ENSG00000175575.12|PAAF1|pc|chr11:73878782:73878819:+	0	+
#Deleted in new
chr11	73886928	73887099	ENSG00000175575.12|PAAF1|pc|chr11:73886928:73887099:+	0	+
#Deleted in new
chr11	73887030	73887099	ENSG00000175575.12|PAAF1|pc|chr11:73887030:73887099:+	0	+
#Deleted in new
chr11	73887039	73887099	ENSG00000175575.12|PAAF1|pc|chr11:73887039:73887099:+	0	+
#Deleted in new
chr11	73887062	73887099	ENSG00000175575.12|PAAF1|pc|chr11:73887062:73887099:+	0	+
#Deleted in new
chr11	73887076	73887099	ENSG00000175575.12|PAAF1|pc|chr11:73887076:73887099:+	0	+
#Partially deleted in new
chr11	73888793	73889245	ENSG00000175575.12|PAAF1|pc|chr11:73888793:73889245:+	0	+
#Deleted in new
chr11	73899145	73899244	ENSG00000175575.12|PAAF1|pc|chr11:73899145:73899244:+	0	+
#Deleted in new
chr11	73909398	73909512	ENSG00000175575.12|PAAF1|pc|chr11:73909398:73909512:+	0	+
#Deleted in new
chr11	73909398	73909593	ENSG00000175575.12|PAAF1|pc|chr11:73909398:73909593:+	0	+
#Deleted in new
chr11	73914412	73914447	ENSG00000175575.12|PAAF1|pc|chr11:73914412:73914447:+	0	+
#Deleted in new
chr11	73914412	73914477	ENSG00000175575.12|PAAF1|pc|chr11:73914412:73914477:+	0	+
#Deleted in new
chr11	73914412	73914504	ENSG00000175575.12|PAAF1|pc|chr11:73914412:73914504:+	0	+
#Deleted in new
chr11	73916544	73916616	ENSG00000175575.12|PAAF1|pc|chr11:73916544:73916616:+	0	+
#Deleted in new
chr11	73916544	73916645	ENSG00000175575.12|PAAF1|pc|chr11:73916544:73916645:+	0	+
#Deleted in new
chr11	73916544	73916660	ENSG00000175575.12|PAAF1|pc|chr11:73916544:73916660:+	0	+
#Deleted in new
chr11	73918949	73919032	ENSG00000175575.12|PAAF1|pc|chr11:73918949:73919032:+	0	+
#Deleted in new
chr11	73924614	73924697	ENSG00000175575.12|PAAF1|pc|chr11:73924614:73924697:+	0	+
#Partially deleted in new
chr11	73927284	73931124	ENSG00000175575.12|PAAF1|pc|chr11:73927284:73931124:+	0	+
#Deleted in new
chr11	73928532	73928810	ENSG00000175575.12|PAAF1|pc|chr11:73928532:73928810:+	0	+
#Deleted in new
chr11	73930267	73930372	ENSG00000175575.12|PAAF1|pc|chr11:73930267:73930372:+	0	+
#Deleted in new
chr1	17397070	17397141	ENSG00000276747.1|PADI6|pc|chr1:17397070:17397141:+	0	+
#Deleted in new
chr1	174009266	174009361	ENSG00000236535.1|RC3H1-IT1|lncRNA|chr1:174009266:174009361:-	0	-
#Deleted in new
chr1	174015853	174016206	ENSG00000236535.1|RC3H1-IT1|lncRNA|chr1:174015853:174016206:-	0	-
#Deleted in new
chr1	174022782	174022985	ENSG00000224977.1|AL121983.1|lncRNA|chr1:174022782:174022985:+	0	+
#Partially deleted in new
chr11	74036127	74036484	ENSG00000168014.16|C2CD3|pc|chr11:74036127:74036484:-	0	-
#Deleted in new
chr11	74070505	74070869	ENSG00000168014.16|C2CD3|pc|chr11:74070505:74070869:-	0	-
#Deleted in new
chr11	74091297	74091364	ENSG00000168014.16|C2CD3|pc|chr11:74091297:74091364:-	0	-
#Partially deleted in new
chr11	74113200	74113892	ENSG00000168014.16|C2CD3|pc|chr11:74113200:74113892:-	0	-
#Deleted in new
chr1	174115299	174115649	ENSG00000227373.5|AL121983.2|lncRNA|chr1:174115299:174115649:-	0	-
#Deleted in new
chr1	174115382	174115649	ENSG00000227373.5|AL121983.2|lncRNA|chr1:174115382:174115649:-	0	-
#Deleted in new
chr1	174115600	174115643	ENSG00000227373.5|AL121983.2|lncRNA|chr1:174115600:174115643:-	0	-
#Deleted in new
chr1	174121637	174121786	ENSG00000227373.5|AL121983.2|lncRNA|chr1:174121637:174121786:-	0	-
#Deleted in new
chr1	174122083	174122192	ENSG00000227373.5|AL121983.2|lncRNA|chr1:174122083:174122192:-	0	-
#Deleted in new
chr11	74128529	74129842	ENSG00000168014.16|C2CD3|pc|chr11:74128529:74129842:-	0	-
#Deleted in new
chr11	74129173	74129972	ENSG00000168014.16|C2CD3|pc|chr11:74129173:74129972:-	0	-
#Deleted in new
chr1	174155626	174155697	ENSG00000227373.5|AL121983.2|lncRNA|chr1:174155626:174155697:-	0	-
#Deleted in new
chr11	74164809	74164876	ENSG00000168014.16|C2CD3|pc|chr11:74164809:74164876:-	0	-
#Partially deleted in new
chr11	74204868	74205746	ENSG00000280269.1|AP000577.1|lncRNA|chr11:74204868:74205746:+	0	+
#Deleted in new
chr11	74205776	74205923	ENSG00000214517.9|PPME1|pc|chr11:74205776:74205923:+	0	+
#Deleted in new
chr11	74222670	74222733	ENSG00000214517.9|PPME1|pc|chr11:74222670:74222733:+	0	+
#Partially deleted in new
chr11	74237787	74239256	ENSG00000214517.9|PPME1|pc|chr11:74237787:74239256:+	0	+
#Deleted in new
chr1	174238821	174238949	ENSG00000152061.23|RABGAP1L|pc|chr1:174238821:174238949:+	0	+
#Deleted in new
chr11	74243387	74243568	ENSG00000149380.11|P4HA3|pc|chr11:74243387:74243568:-	0	-
#Partially deleted in new
chr11	74248242	74251018	ENSG00000214517.9|PPME1|pc|chr11:74248242:74251018:+	0	+
#Deleted in new
chr11	74259840	74260136	ENSG00000149380.11|P4HA3|pc|chr11:74259840:74260136:-	0	-
#Deleted in new
chr11	74259922	74260136	ENSG00000149380.11|P4HA3|pc|chr11:74259922:74260136:-	0	-
#Partially deleted in new
chr11	74287115	74287291	ENSG00000149380.11|P4HA3|pc|chr11:74287115:74287291:-	0	-
#Deleted in new
chr11	74322233	74322301	ENSG00000246211.2|P4HA3-AS1|lncRNA|chr11:74322233:74322301:+	0	+
#Deleted in new
chr11	74322706	74324003	ENSG00000246211.2|P4HA3-AS1|lncRNA|chr11:74322706:74324003:+	0	+
#Deleted in new
chr11	74324094	74324210	ENSG00000246211.2|P4HA3-AS1|lncRNA|chr11:74324094:74324210:+	0	+
#Deleted in new
chr11	74324340	74324705	ENSG00000246211.2|P4HA3-AS1|lncRNA|chr11:74324340:74324705:+	0	+
#Deleted in new
chr11	7435722	7435977	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7435722:7435977:-	0	-
#Deleted in new
chr11	7435827	7435977	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7435827:7435977:-	0	-
#Deleted in new
chr11	7440493	7440525	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7440493:7440525:-	0	-
#Deleted in new
chr1	1744250	1744668	ENSG00000215790.6|SLC35E2|pc|chr1:1744250:1744668:-	0	-
#Deleted in new
chr11	74428332	74428565	ENSG00000254631.5|AP001372.1|lncRNA|chr11:74428332:74428565:+	0	+
#Deleted in new
chr11	74464261	74464325	ENSG00000175538.10|KCNE3|pc|chr11:74464261:74464325:-	0	-
#Deleted in new
chr11	74484176	74484248	ENSG00000254631.5|AP001372.1|lncRNA|chr11:74484176:74484248:+	0	+
#Deleted in new
chr11	74496648	74498533	ENSG00000254837.2|AP001372.2|lncRNA|chr11:74496648:74498533:+	0	+
#Deleted in new
chr11	74497187	74498084	ENSG00000254837.2|AP001372.2|lncRNA|chr11:74497187:74498084:+	0	+
#Deleted in new
chr11	7450372	7450442	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7450372:7450442:-	0	-
#Deleted in new
chr11	7450376	7450442	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7450376:7450442:-	0	-
#Deleted in new
chr1	174544843	174545911	ENSG00000152061.23|RABGAP1L|pc|chr1:174544843:174545911:+	0	+
#Deleted in new
chr11	7456817	7456849	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7456817:7456849:-	0	-
#Deleted in new
chr1	1745723	1745919	ENSG00000215790.6|SLC35E2|pc|chr1:1745723:1745919:-	0	-
#Deleted in new
chr1	1745723	1745992	ENSG00000215790.6|SLC35E2|pc|chr1:1745723:1745992:-	0	-
#Deleted in new
chr11	74595146	74595502	ENSG00000077514.8|POLD3|pc|chr11:74595146:74595502:+	0	+
#Deleted in new
chr11	7465752	7465774	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7465752:7465774:-	0	-
#Deleted in new
chr11	7465752	7465790	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7465752:7465790:-	0	-
#Deleted in new
chr11	7465752	7465822	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7465752:7465822:-	0	-
#Deleted in new
chr11	7465752	7465830	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7465752:7465830:-	0	-
#Deleted in new
chr11	7465752	7465835	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7465752:7465835:-	0	-
#Partially deleted in new
chr11	74668776	74669117	ENSG00000077514.8|POLD3|pc|chr11:74668776:74669117:+	0	+
#Deleted in new
chr11	7469640	7469766	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7469640:7469766:-	0	-
#Deleted in new
chr11	7469686	7469766	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7469686:7469766:-	0	-
#Deleted in new
chr1	174700412	174700746	ENSG00000152061.23|RABGAP1L|pc|chr1:174700412:174700746:+	0	+
#Deleted in new
chr1	174700524	174700865	ENSG00000152061.23|RABGAP1L|pc|chr1:174700524:174700865:+	0	+
#Deleted in new
chr1	174700730	174700865	ENSG00000152061.23|RABGAP1L|pc|chr1:174700730:174700865:+	0	+
#Deleted in new
chr11	74700921	74701507	ENSG00000054938.15|CHRDL2|pc|chr11:74700921:74701507:-	0	-
#Deleted in new
chr1	174701019	174701145	ENSG00000152061.23|RABGAP1L|pc|chr1:174701019:174701145:+	0	+
#Deleted in new
chr1	174701021	174701122	ENSG00000152061.23|RABGAP1L|pc|chr1:174701021:174701122:+	0	+
#Deleted in new
chr11	74701591	74701646	ENSG00000054938.15|CHRDL2|pc|chr11:74701591:74701646:-	0	-
#Deleted in new
chr11	74807738	74808186	ENSG00000166435.15|XRRA1|pc|chr11:74807738:74808186:-	0	-
#Deleted in new
chr1	174896957	174897474	ENSG00000223525.1|RABGAP1L-IT1|lncRNA|chr1:174896957:174897474:+	0	+
#Deleted in new
chr1	174897776	174897996	ENSG00000223525.1|RABGAP1L-IT1|lncRNA|chr1:174897776:174897996:+	0	+
#Deleted in new
chr11	74931764	74931796	ENSG00000166435.15|XRRA1|pc|chr11:74931764:74931796:-	0	-
#Deleted in new
chr1	174934946	174935100	ENSG00000229531.5|Z99127.1|lncRNA|chr1:174934946:174935100:-	0	-
#Deleted in new
chr1	174935398	174935506	ENSG00000229531.5|Z99127.1|lncRNA|chr1:174935398:174935506:-	0	-
#Deleted in new
chr1	174948722	174948876	ENSG00000229531.5|Z99127.1|lncRNA|chr1:174948722:174948876:-	0	-
#Partially deleted in new
chr11	74963594	74963687	ENSG00000118363.11|SPCS2|pc|chr11:74963594:74963687:+	0	+
#Partially deleted in new
chr11	75004304	75004405	ENSG00000162139.9|NEU3|pc|chr11:75004304:75004405:+	0	+
#Partially deleted in new
chr1	175010788	175011096	ENSG00000120333.4|MRPS14|pc|chr1:175010788:175011096:-	0	-
#Deleted in new
chr1	175011672	175011751	ENSG00000120333.4|MRPS14|pc|chr1:175011672:175011751:-	0	-
#Deleted in new
chr11	75018690	75018893	ENSG00000162139.9|NEU3|pc|chr11:75018690:75018893:+	0	+
#Deleted in new
chr11	7504765	7504872	ENSG00000251364.6|AC107884.1|lncRNA|chr11:7504765:7504872:-	0	-
#Partially deleted in new
chr11	75081752	75089774	ENSG00000171561.4|OR2AT4|pc|chr11:75081752:75089774:-	0	-
#Partially deleted in new
chr11	75081752	75090364	ENSG00000171561.4|OR2AT4|pc|chr11:75081752:75090364:-	0	-
#Deleted in new
chr11	75096088	75096160	ENSG00000171561.4|OR2AT4|pc|chr11:75096088:75096160:-	0	-
#Deleted in new
chr11	75096088	75096222	ENSG00000171561.4|OR2AT4|pc|chr11:75096088:75096222:-	0	-
#Partially deleted in new
chr11	75099171	75099518	ENSG00000255395.1|AP001972.4|lncRNA|chr11:75099171:75099518:-	0	-
#Deleted in new
chr11	75099842	75099880	ENSG00000255395.1|AP001972.4|lncRNA|chr11:75099842:75099880:-	0	-
#Deleted in new
chr11	75133818	75133929	ENSG00000255395.1|AP001972.4|lncRNA|chr11:75133818:75133929:-	0	-
#Deleted in new
chr11	75157070	75157115	ENSG00000137491.14|SLCO2B1|pc|chr11:75157070:75157115:+	0	+
#Deleted in new
chr1	175166561	175166737	ENSG00000235750.9|KIAA0040|pc|chr1:175166561:175166737:-	0	-
#Deleted in new
chr1	175166561	175166741	ENSG00000235750.9|KIAA0040|pc|chr1:175166561:175166741:-	0	-
#Deleted in new
chr11	75210838	75211109	ENSG00000255136.2|AP001972.3|lncRNA|chr11:75210838:75211109:-	0	-
#Deleted in new
chr11	75210848	75211109	ENSG00000255136.2|AP001972.3|lncRNA|chr11:75210848:75211109:-	0	-
#Deleted in new
chr11	75210908	75211109	ENSG00000255136.2|AP001972.3|lncRNA|chr11:75210908:75211109:-	0	-
#Deleted in new
chr11	752263	752473	ENSG00000177156.10|TALDO1|pc|chr11:752263:752473:+	0	+
#Deleted in new
chr11	75303598	75303670	ENSG00000137486.16|ARRB1|pc|chr11:75303598:75303670:-	0	-
#Partially deleted in new
chr11	75405613	75406913	ENSG00000149273.14|RPS3|pc|chr11:75405613:75406913:+	0	+
#Partially deleted in new
chr11	75421726	75422280	ENSG00000149273.14|RPS3|pc|chr11:75421726:75422280:+	0	+
#Deleted in new
chr11	75448491	75448649	ENSG00000158555.14|GDPD5|pc|chr11:75448491:75448649:-	0	-
#Deleted in new
chr11	75450392	75451233	ENSG00000158555.14|GDPD5|pc|chr11:75450392:75451233:-	0	-
#Deleted in new
chr11	75515974	75516166	ENSG00000158555.14|GDPD5|pc|chr11:75515974:75516166:-	0	-
#Deleted in new
chr11	75516092	75516166	ENSG00000158555.14|GDPD5|pc|chr11:75516092:75516166:-	0	-
#Deleted in new
chr11	75517328	75517426	ENSG00000158555.14|GDPD5|pc|chr11:75517328:75517426:-	0	-
#Deleted in new
chr11	75583195	75583281	ENSG00000255326.1|AP001922.5|lncRNA|chr11:75583195:75583281:+	0	+
#Partially deleted in new
chr1	1756003	1756343	ENSG00000008130.15|NADK|pc|chr1:1756003:1756343:-	0	-
#Deleted in new
chr11	75638508	75638587	ENSG00000254630.1|AP001922.2|lncRNA|chr11:75638508:75638587:-	0	-
#Deleted in new
chr11	7573904	7574022	ENSG00000166387.11|PPFIBP2|pc|chr11:7573904:7574022:+	0	+
#Deleted in new
chr11	75759511	75759626	ENSG00000062282.14|DGAT2|pc|chr11:75759511:75759626:+	0	+
#Partially deleted in new
chr11	75762134	75762544	ENSG00000247867.2|AP001922.1|lncRNA|chr11:75762134:75762544:-	0	-
#Deleted in new
chr11	75773721	75774042	ENSG00000062282.14|DGAT2|pc|chr11:75773721:75774042:+	0	+
#Partially deleted in new
chr11	75803430	75803517	ENSG00000255507.5|AP003031.2|lncRNA|chr11:75803430:75803517:-	0	-
#Deleted in new
chr11	75803461	75803517	ENSG00000255507.5|AP003031.2|lncRNA|chr11:75803461:75803517:-	0	-
#Deleted in new
chr11	75803518	75803725	ENSG00000255507.5|AP003031.2|lncRNA|chr11:75803518:75803725:-	0	-
#Deleted in new
chr11	75809272	75809374	ENSG00000255507.5|AP003031.2|lncRNA|chr11:75809272:75809374:-	0	-
#Deleted in new
chr11	75838943	75839042	ENSG00000198382.8|UVRAG|pc|chr11:75838943:75839042:+	0	+
#Deleted in new
chr11	75878403	75878485	ENSG00000198382.8|UVRAG|pc|chr11:75878403:75878485:+	0	+
#Deleted in new
chr1	175908546	175908770	ENSG00000227740.1|AL513329.1|lncRNA|chr1:175908546:175908770:-	0	-
#Deleted in new
chr11	75915130	75915213	ENSG00000255081.1|AP003168.2|lncRNA|chr11:75915130:75915213:+	0	+
#Deleted in new
chr1	1759733	1759902	ENSG00000008130.15|NADK|pc|chr1:1759733:1759902:-	0	-
#Deleted in new
chr11	75979525	75980038	ENSG00000198382.8|UVRAG|pc|chr11:75979525:75980038:+	0	+
#Deleted in new
chr11	75980059	75980119	ENSG00000198382.8|UVRAG|pc|chr11:75980059:75980119:+	0	+
#Partially deleted in new
chr11	760121	760965	ENSG00000177156.10|TALDO1|pc|chr11:760121:760965:+	0	+
#Deleted in new
chr1	176017276	176017569	ENSG00000228686.2|AL590723.1|lncRNA|chr1:176017276:176017569:+	0	+
#Deleted in new
chr1	176018424	176018760	ENSG00000228686.2|AL590723.1|lncRNA|chr1:176018424:176018760:+	0	+
#Deleted in new
chr1	17604475	17604882	ENSG00000074964.16|ARHGEF10L|pc|chr1:17604475:17604882:+	0	+
#Deleted in new
chr1	176133846	176133900	ENSG00000143207.19|RFWD2|pc|chr1:176133846:176133900:-	0	-
#Deleted in new
chr11	76137594	76137731	ENSG00000255421.1|AP002340.1|lncRNA|chr11:76137594:76137731:-	0	-
#Deleted in new
chr1	176168664	176168748	ENSG00000143207.19|RFWD2|pc|chr1:176168664:176168748:-	0	-
#Partially deleted in new
chr1	176207647	176207871	ENSG00000236021.1|AL359265.3|lncRNA|chr1:176207647:176207871:+	0	+
#Deleted in new
chr1	176218533	176218646	ENSG00000236021.1|AL359265.3|lncRNA|chr1:176218533:176218646:+	0	+
#Deleted in new
chr1	176229088	176229330	ENSG00000236021.1|AL359265.3|lncRNA|chr1:176229088:176229330:+	0	+
#Partially deleted in new
chr11	76355617	76359573	ENSG00000137492.7|THAP12|pc|chr11:76355617:76359573:-	0	-
#Deleted in new
chr11	76368565	76368643	ENSG00000137492.7|THAP12|pc|chr11:76368565:76368643:-	0	-
#Deleted in new
chr11	76382784	76382904	ENSG00000179240.9|AP002360.1|pc|chr11:76382784:76382904:+	0	+
#Deleted in new
chr11	76394973	76395099	ENSG00000179240.9|AP002360.1|pc|chr11:76394973:76395099:+	0	+
#Deleted in new
chr11	76403659	76403870	ENSG00000179240.9|AP002360.1|pc|chr11:76403659:76403870:+	0	+
#Deleted in new
chr11	76403659	76403921	ENSG00000179240.9|AP002360.1|pc|chr11:76403659:76403921:+	0	+
#Partially deleted in new
chr11	76403659	76408136	ENSG00000179240.9|AP002360.1|pc|chr11:76403659:76408136:+	0	+
#Deleted in new
chr11	76441337	76441639	ENSG00000255135.3|AP002360.2|lncRNA|chr11:76441337:76441639:-	0	-
#Deleted in new
chr11	76441353	76441639	ENSG00000255135.3|AP002360.2|lncRNA|chr11:76441353:76441639:-	0	-
#Partially deleted in new
chr1	176463170	176463418	ENSG00000116183.10|PAPPA2|pc|chr1:176463170:176463418:+	0	+
#Deleted in new
chr11	76607852	76608238	ENSG00000255363.2|AP001189.5|lncRNA|chr11:76607852:76608238:-	0	-
#Partially deleted in new
chr11	76657055	76657156	ENSG00000236304.1|AP001189.1|lncRNA|chr11:76657055:76657156:+	0	+
#Partially deleted in new
chr11	76675078	76675186	ENSG00000254975.1|AP001189.4|lncRNA|chr11:76675078:76675186:+	0	+
#Deleted in new
chr11	767219	767373	ENSG00000177225.16|GATD1|pc|chr11:767219:767373:-	0	-
#Deleted in new
chr11	767221	767373	ENSG00000177225.16|GATD1|pc|chr11:767221:767373:-	0	-
#Partially deleted in new
chr11	767224	770398	ENSG00000177225.16|GATD1|pc|chr11:767224:770398:-	0	-
#Split in new
chr11	767224	770903	ENSG00000177225.16|GATD1|pc|chr11:767224:770903:-	0	-
#Deleted in new
chr11	767227	767368	ENSG00000177225.16|GATD1|pc|chr11:767227:767368:-	0	-
#Deleted in new
chr11	767227	767373	ENSG00000177225.16|GATD1|pc|chr11:767227:767373:-	0	-
#Partially deleted in new
chr11	76759915	76760339	ENSG00000254632.1|AP003119.1|lncRNA|chr11:76759915:76760339:-	0	-
#Deleted in new
chr11	7677147	7677222	ENSG00000166394.14|CYB5R2|pc|chr11:7677147:7677222:-	0	-
#Deleted in new
chr11	76791751	76792769	ENSG00000182704.7|TSKU|pc|chr11:76791751:76792769:+	0	+
#Partially deleted in new
chr1	17694046	17695280	ENSG00000074964.16|ARHGEF10L|pc|chr1:17694046:17695280:+	0	+
#Deleted in new
chr11	76955416	76955585	ENSG00000254988.1|AP002498.1|lncRNA|chr11:76955416:76955585:-	0	-
#Deleted in new
chr11	76957464	76957586	ENSG00000078124.11|ACER3|pc|chr11:76957464:76957586:+	0	+
#Deleted in new
chr11	76978400	76978619	ENSG00000254988.1|AP002498.1|lncRNA|chr11:76978400:76978619:-	0	-
#Deleted in new
chr1	176981414	176981773	ENSG00000152092.15|ASTN1|pc|chr1:176981414:176981773:-	0	-
#Deleted in new
chr11	76994155	76994212	ENSG00000078124.11|ACER3|pc|chr11:76994155:76994212:+	0	+
#Deleted in new
chr11	76994155	76994226	ENSG00000078124.11|ACER3|pc|chr11:76994155:76994226:+	0	+
#Deleted in new
chr11	77037175	77037298	ENSG00000198488.10|B3GNT6|pc|chr11:77037175:77037298:+	0	+
#Deleted in new
chr11	7709400	7709517	ENSG00000254707.1|AC104237.1|lncRNA|chr11:7709400:7709517:+	0	+
#Deleted in new
chr1	17717686	17717744	ENSG00000236648.1|AL136529.1|lncRNA|chr1:17717686:17717744:+	0	+
#Deleted in new
chr1	17718559	17718720	ENSG00000236648.1|AL136529.1|lncRNA|chr1:17718559:17718720:+	0	+
#Partially deleted in new
chr11	77208696	77209356	ENSG00000137474.19|MYO7A|pc|chr11:77208696:77209356:+	0	+
#Deleted in new
chr11	77210886	77210911	ENSG00000137474.19|MYO7A|pc|chr11:77210886:77210911:+	0	+
#Deleted in new
chr1	17721679	17721768	ENSG00000236648.1|AL136529.1|lncRNA|chr1:17721679:17721768:+	0	+
#Deleted in new
chr11	77224237	77224302	ENSG00000178795.9|GDPD4|pc|chr11:77224237:77224302:-	0	-
#Deleted in new
chr11	77301604	77301649	ENSG00000178795.9|GDPD4|pc|chr11:77301604:77301649:-	0	-
#Deleted in new
chr11	77301604	77301666	ENSG00000178795.9|GDPD4|pc|chr11:77301604:77301666:-	0	-
#Deleted in new
chr11	77301604	77301687	ENSG00000178795.9|GDPD4|pc|chr11:77301604:77301687:-	0	-
#Deleted in new
chr11	77325327	77325376	ENSG00000149269.9|PAK1|pc|chr11:77325327:77325376:-	0	-
#Deleted in new
chr11	77329149	77329312	ENSG00000149269.9|PAK1|pc|chr11:77329149:77329312:-	0	-
#Deleted in new
chr11	77397026	77397093	ENSG00000149269.9|PAK1|pc|chr11:77397026:77397093:-	0	-
#Deleted in new
chr11	77397026	77397158	ENSG00000149269.9|PAK1|pc|chr11:77397026:77397158:-	0	-
#Deleted in new
chr1	17749676	17749978	ENSG00000236648.1|AL136529.1|lncRNA|chr1:17749676:17749978:+	0	+
#Deleted in new
chr11	77529947	77530014	ENSG00000074201.8|CLNS1A|pc|chr11:77529947:77530014:-	0	-
#Deleted in new
chr11	7754392	7754521	ENSG00000254951.7|AC044810.2|lncRNA|chr11:7754392:7754521:-	0	-
#Deleted in new
chr1	17755312	17755504	ENSG00000117148.7|ACTL8|pc|chr1:17755312:17755504:+	0	+
#Deleted in new
chr11	77585361	77585459	ENSG00000074201.8|CLNS1A|pc|chr11:77585361:77585459:-	0	-
#Deleted in new
chr11	77611314	77611374	ENSG00000074201.8|CLNS1A|pc|chr11:77611314:77611374:-	0	-
#Deleted in new
chr11	77621865	77622044	ENSG00000074201.8|CLNS1A|pc|chr11:77621865:77622044:-	0	-
#Partially deleted in new
chr11	776679	777179	ENSG00000177225.16|GATD1|pc|chr11:776679:777179:-	0	-
#Deleted in new
chr1	177700523	177701362	ENSG00000236720.1|LINC01741|lncRNA|chr1:177700523:177701362:+	0	+
#Deleted in new
chr1	177701458	177701574	ENSG00000236720.1|LINC01741|lncRNA|chr1:177701458:177701574:+	0	+
#Deleted in new
chr11	77717711	77718046	ENSG00000254985.1|RSF1-IT2|lncRNA|chr11:77717711:77718046:-	0	-
#Deleted in new
chr11	77718180	77718411	ENSG00000254985.1|RSF1-IT2|lncRNA|chr11:77718180:77718411:-	0	-
#Deleted in new
chr11	77738679	77738930	ENSG00000255409.1|RSF1-IT1|lncRNA|chr11:77738679:77738930:-	0	-
#Deleted in new
chr11	778112	778218	ENSG00000255284.1|AP006621.3|lncRNA|chr11:778112:778218:+	0	+
#Deleted in new
chr11	778112	778285	ENSG00000255284.1|AP006621.3|lncRNA|chr11:778112:778285:+	0	+
#Deleted in new
chr11	77829653	77830127	ENSG00000254459.1|AP002812.2|lncRNA|chr11:77829653:77830127:-	0	-
#Deleted in new
chr11	77831891	77832012	ENSG00000087884.14|AAMDC|pc|chr11:77831891:77832012:+	0	+
#Deleted in new
chr11	77841018	77841060	ENSG00000087884.14|AAMDC|pc|chr11:77841018:77841060:+	0	+
#Deleted in new
chr11	77841018	77841255	ENSG00000087884.14|AAMDC|pc|chr11:77841018:77841255:+	0	+
#Deleted in new
chr11	77841137	77841224	ENSG00000087884.14|AAMDC|pc|chr11:77841137:77841224:+	0	+
#Deleted in new
chr11	77850603	77851000	ENSG00000254691.1|AP002812.3|lncRNA|chr11:77850603:77851000:+	0	+
#Deleted in new
chr11	77851357	77851511	ENSG00000254691.1|AP002812.3|lncRNA|chr11:77851357:77851511:+	0	+
#Deleted in new
chr11	77855344	77855482	ENSG00000087884.14|AAMDC|pc|chr11:77855344:77855482:+	0	+
#Deleted in new
chr1	1778745	1778790	ENSG00000008130.15|NADK|pc|chr1:1778745:1778790:-	0	-
#Deleted in new
chr11	77876947	77877049	ENSG00000087884.14|AAMDC|pc|chr11:77876947:77877049:+	0	+
#Deleted in new
chr11	77876949	77877049	ENSG00000087884.14|AAMDC|pc|chr11:77876949:77877049:+	0	+
#Deleted in new
chr11	77884779	77884916	ENSG00000087884.14|AAMDC|pc|chr11:77884779:77884916:+	0	+
#Deleted in new
chr11	77900570	77900686	ENSG00000087884.14|AAMDC|pc|chr11:77900570:77900686:+	0	+
#Deleted in new
chr11	77900570	77900714	ENSG00000087884.14|AAMDC|pc|chr11:77900570:77900714:+	0	+
#Deleted in new
chr11	77900570	77900732	ENSG00000087884.14|AAMDC|pc|chr11:77900570:77900732:+	0	+
#Deleted in new
chr11	77900570	77900771	ENSG00000087884.14|AAMDC|pc|chr11:77900570:77900771:+	0	+
#Deleted in new
chr11	77900570	77900785	ENSG00000087884.14|AAMDC|pc|chr11:77900570:77900785:+	0	+
#Deleted in new
chr1	1779156	1779196	ENSG00000008130.15|NADK|pc|chr1:1779156:1779196:-	0	-
#Partially deleted in new
chr1	177927565	177928023	ENSG00000120341.18|SEC16B|pc|chr1:177927565:177928023:-	0	-
#Partially deleted in new
chr11	779616	780755	ENSG00000279672.1|AP006621.5|lncRNA|chr11:779616:780755:+	0	+
#Partially deleted in new
chr11	77977888	77979100	ENSG00000149262.16|INTS4|pc|chr11:77977888:77979100:-	0	-
#Deleted in new
chr11	77987015	77987698	ENSG00000149262.16|INTS4|pc|chr11:77987015:77987698:-	0	-
#Deleted in new
chr11	77987528	77987698	ENSG00000149262.16|INTS4|pc|chr11:77987528:77987698:-	0	-
#Deleted in new
chr11	77987603	77987698	ENSG00000149262.16|INTS4|pc|chr11:77987603:77987698:-	0	-
#Deleted in new
chr11	780116	780155	ENSG00000279672.1|AP006621.5|lncRNA|chr11:780116:780155:+	0	+
#Partially deleted in new
chr11	780156	780666	ENSG00000279672.1|AP006621.5|lncRNA|chr11:780156:780666:+	0	+
#Deleted in new
chr11	78015714	78016025	ENSG00000254829.1|AP003032.2|lncRNA|chr11:78015714:78016025:+	0	+
#Deleted in new
chr11	78016120	78016495	ENSG00000254829.1|AP003032.2|lncRNA|chr11:78016120:78016495:+	0	+
#Deleted in new
chr11	78022932	78023021	ENSG00000254675.1|AP003032.1|lncRNA|chr11:78022932:78023021:+	0	+
#Deleted in new
chr11	78023159	78023294	ENSG00000151364.16|KCTD14|pc|chr11:78023159:78023294:-	0	-
#Deleted in new
chr11	78023533	78023721	ENSG00000254675.1|AP003032.1|lncRNA|chr11:78023533:78023721:+	0	+
#Deleted in new
chr11	78038663	78038758	ENSG00000151364.16|KCTD14|pc|chr11:78038663:78038758:-	0	-
#Deleted in new
chr11	78038663	78038758	ENSG00000259112.2|NDUFC2-KCTD14|pc|chr11:78038663:78038758:-	0	-
#Deleted in new
chr11	78046060	78046191	ENSG00000151364.16|KCTD14|pc|chr11:78046060:78046191:-	0	-
#Partially deleted in new
chr11	78068303	78070036	ENSG00000151366.12|NDUFC2|pc|chr11:78068303:78070036:-	0	-
#Partially deleted in new
chr11	78068348	78069910	ENSG00000151366.12|NDUFC2|pc|chr11:78068348:78069910:-	0	-
#Deleted in new
chr11	78102873	78102948	ENSG00000159063.12|ALG8|pc|chr11:78102873:78102948:-	0	-
#Deleted in new
chr11	78102893	78102948	ENSG00000159063.12|ALG8|pc|chr11:78102893:78102948:-	0	-
#Deleted in new
chr11	78103386	78103461	ENSG00000159063.12|ALG8|pc|chr11:78103386:78103461:-	0	-
#Deleted in new
chr11	78107716	78107764	ENSG00000159063.12|ALG8|pc|chr11:78107716:78107764:-	0	-
#Deleted in new
chr11	78114703	78114798	ENSG00000159063.12|ALG8|pc|chr11:78114703:78114798:-	0	-
#Deleted in new
chr1	178120960	178121087	ENSG00000075391.16|RASAL2|pc|chr1:178120960:178121087:+	0	+
#Deleted in new
chr1	178123718	178123815	ENSG00000075391.16|RASAL2|pc|chr1:178123718:178123815:+	0	+
#Deleted in new
chr1	178125326	178125501	ENSG00000075391.16|RASAL2|pc|chr1:178125326:178125501:+	0	+
#Deleted in new
chr11	78135229	78135347	ENSG00000159063.12|ALG8|pc|chr11:78135229:78135347:-	0	-
#Deleted in new
chr11	78135288	78135347	ENSG00000159063.12|ALG8|pc|chr11:78135288:78135347:-	0	-
#Deleted in new
chr11	78137241	78137645	ENSG00000159063.12|ALG8|pc|chr11:78137241:78137645:-	0	-
#Deleted in new
chr11	78138709	78138767	ENSG00000159063.12|ALG8|pc|chr11:78138709:78138767:-	0	-
#Deleted in new
chr11	78148976	78149093	ENSG00000246174.7|KCTD21-AS1|lncRNA|chr11:78148976:78149093:+	0	+
#Partially deleted in new
chr11	781644	781750	ENSG00000255142.1|AP006621.2|lncRNA|chr11:781644:781750:+	0	+
#Deleted in new
chr11	78167180	78167239	ENSG00000246174.7|KCTD21-AS1|lncRNA|chr11:78167180:78167239:+	0	+
#Deleted in new
chr11	78176253	78176302	ENSG00000188997.7|KCTD21|pc|chr11:78176253:78176302:-	0	-
#Deleted in new
chr11	78176887	78176985	ENSG00000188997.7|KCTD21|pc|chr11:78176887:78176985:-	0	-
#Partially deleted in new
chr11	781927	782105	ENSG00000255142.1|AP006621.2|lncRNA|chr11:781927:782105:+	0	+
#Partially deleted in new
chr1	17825766	17827061	ENSG00000117148.7|ACTL8|pc|chr1:17825766:17827061:+	0	+
#Partially deleted in new
chr1	17825766	17827063	ENSG00000117148.7|ACTL8|pc|chr1:17825766:17827063:+	0	+
#Deleted in new
chr11	78318142	78318219	ENSG00000033327.12|GAB2|pc|chr11:78318142:78318219:-	0	-
#Partially deleted in new
chr11	783529	783671	ENSG00000255284.1|AP006621.3|lncRNA|chr11:783529:783671:+	0	+
#Deleted in new
chr11	78364015	78364103	ENSG00000033327.12|GAB2|pc|chr11:78364015:78364103:-	0	-
#Deleted in new
chr11	78388060	78388155	ENSG00000254649.1|AP003086.3|lncRNA|chr11:78388060:78388155:+	0	+
#Deleted in new
chr11	78392135	78392405	ENSG00000254649.1|AP003086.3|lncRNA|chr11:78392135:78392405:+	0	+
#Deleted in new
chr11	784023	784297	ENSG00000255284.1|AP006621.3|lncRNA|chr11:784023:784297:+	0	+
#Deleted in new
chr1	178499533	178499634	ENSG00000188585.8|CLEC20A|pc|chr1:178499533:178499634:-	0	-
#Deleted in new
chr1	178522324	178522649	ENSG00000240021.9|TEX35|pc|chr1:178522324:178522649:+	0	+
#Deleted in new
chr1	178523301	178523431	ENSG00000240021.9|TEX35|pc|chr1:178523301:178523431:+	0	+
#Deleted in new
chr1	178525370	178525468	ENSG00000240021.9|TEX35|pc|chr1:178525370:178525468:+	0	+
#Deleted in new
chr11	78533175	78533303	ENSG00000255084.1|AP003110.1|lncRNA|chr11:78533175:78533303:+	0	+
#Partially deleted in new
chr1	178533724	178533885	ENSG00000240021.9|TEX35|pc|chr1:178533724:178533885:+	0	+
#Deleted in new
chr1	178541886	178541978	ENSG00000240021.9|TEX35|pc|chr1:178541886:178541978:+	0	+
#Deleted in new
chr1	178542751	178542885	ENSG00000213057.5|C1orf220|lncRNA|chr1:178542751:178542885:+	0	+
#Deleted in new
chr1	178542795	178542885	ENSG00000213057.5|C1orf220|lncRNA|chr1:178542795:178542885:+	0	+
#Deleted in new
chr11	78546508	78546640	ENSG00000255084.1|AP003110.1|lncRNA|chr11:78546508:78546640:+	0	+
#Deleted in new
chr1	178547093	178547163	ENSG00000240021.9|TEX35|pc|chr1:178547093:178547163:+	0	+
#Deleted in new
chr11	78555214	78555369	ENSG00000255084.1|AP003110.1|lncRNA|chr11:78555214:78555369:+	0	+
#Partially deleted in new
chr11	78573133	78573530	ENSG00000137513.9|NARS2|pc|chr11:78573133:78573530:-	0	-
#Deleted in new
chr11	7879006	7879083	ENSG00000254951.7|AC044810.2|lncRNA|chr11:7879006:7879083:-	0	-
#Deleted in new
chr11	7879006	7879083	ENSG00000271758.2|AC044810.3|lncRNA|chr11:7879006:7879083:-	0	-
#Deleted in new
chr11	7879594	7879713	ENSG00000254951.7|AC044810.2|lncRNA|chr11:7879594:7879713:-	0	-
#Deleted in new
chr11	7879594	7879759	ENSG00000254951.7|AC044810.2|lncRNA|chr11:7879594:7879759:-	0	-
#Deleted in new
chr11	7879594	7879759	ENSG00000271758.2|AC044810.3|lncRNA|chr11:7879594:7879759:-	0	-
#Deleted in new
chr11	7881955	7882073	ENSG00000254951.7|AC044810.2|lncRNA|chr11:7881955:7882073:-	0	-
#Deleted in new
chr11	7881955	7882073	ENSG00000271758.2|AC044810.3|lncRNA|chr11:7881955:7882073:-	0	-
#Partially deleted in new
chr1	178893918	178894325	ENSG00000116191.17|RALGPS2|pc|chr1:178893918:178894325:+	0	+
#Deleted in new
chr11	7905602	7905955	ENSG00000254951.7|AC044810.2|lncRNA|chr11:7905602:7905955:-	0	-
#Deleted in new
chr1	179097827	179098023	ENSG00000186283.13|TOR3A|pc|chr1:179097827:179098023:+	0	+
#Deleted in new
chr1	179110580	179110845	ENSG00000143322.19|ABL2|pc|chr1:179110580:179110845:-	0	-
#Deleted in new
chr1	179133311	179133374	ENSG00000143322.19|ABL2|pc|chr1:179133311:179133374:-	0	-
#Deleted in new
chr11	79191557	79191792	ENSG00000254885.1|AP001547.1|lncRNA|chr11:79191557:79191792:+	0	+
#Partially deleted in new
chr1	1793244	1794197	ENSG00000078369.17|GNB1|pc|chr1:1793244:1794197:-	0	-
#Deleted in new
chr1	179449070	179449213	ENSG00000162779.21|AXDND1|pc|chr1:179449070:179449213:+	0	+
#Deleted in new
chr1	179506832	179506926	ENSG00000162779.21|AXDND1|pc|chr1:179506832:179506926:+	0	+
#Deleted in new
chr1	179525333	179525447	ENSG00000162779.21|AXDND1|pc|chr1:179525333:179525447:+	0	+
#Deleted in new
chr1	179532969	179533104	ENSG00000162779.21|AXDND1|pc|chr1:179532969:179533104:+	0	+
#Deleted in new
chr1	179548681	179548922	ENSG00000261250.1|AL160286.3|lncRNA|chr1:179548681:179548922:-	0	-
#Deleted in new
chr11	7970250	7970307	ENSG00000175390.13|EIF3F|pc|chr11:7970250:7970307:+	0	+
#Deleted in new
chr11	7981669	7981783	ENSG00000175390.13|EIF3F|pc|chr11:7981669:7981783:+	0	+
#Deleted in new
chr1	179817367	179817424	ENSG00000229407.5|AL359853.1|lncRNA|chr1:179817367:179817424:-	0	-
#Deleted in new
chr1	179817991	179818191	ENSG00000229407.5|AL359853.1|lncRNA|chr1:179817991:179818191:-	0	-
#Deleted in new
chr1	179829608	179829831	ENSG00000231966.1|AL359853.2|lncRNA|chr1:179829608:179829831:-	0	-
#Deleted in new
chr1	179835994	179836124	ENSG00000231966.1|AL359853.2|lncRNA|chr1:179835994:179836124:-	0	-
#Deleted in new
chr1	179867526	179869196	ENSG00000169905.12|TOR1AIP2|pc|chr1:179867526:179869196:-	0	-
#Deleted in new
chr1	179887828	179887959	ENSG00000143337.18|TOR1AIP1|pc|chr1:179887828:179887959:+	0	+
#Deleted in new
chr1	179903965	179904022	ENSG00000143337.18|TOR1AIP1|pc|chr1:179903965:179904022:+	0	+
#Deleted in new
chr1	179904651	179904741	ENSG00000143337.18|TOR1AIP1|pc|chr1:179904651:179904741:+	0	+
#Deleted in new
chr1	179904651	179904767	ENSG00000143337.18|TOR1AIP1|pc|chr1:179904651:179904767:+	0	+
#Partially deleted in new
chr11	7992126	7992430	ENSG00000175390.13|EIF3F|pc|chr11:7992126:7992430:+	0	+
#Deleted in new
chr1	179926640	179926667	ENSG00000261831.2|AL353708.2|lncRNA|chr1:179926640:179926667:-	0	-
#Deleted in new
chr1	179926794	179926896	ENSG00000261831.2|AL353708.2|lncRNA|chr1:179926794:179926896:-	0	-
#Partially deleted in new
chr11	7995944	8001862	ENSG00000175390.13|EIF3F|pc|chr11:7995944:8001862:+	0	+
#Partially deleted in new
chr11	79966804	79968708	ENSG00000279295.1|AP001541.1|lncRNA|chr11:79966804:79968708:+	0	+
#Deleted in new
chr1	180052223	180052316	ENSG00000135837.15|CEP350|pc|chr1:180052223:180052316:+	0	+
#Deleted in new
chr11	8011277	8012268	ENSG00000255420.1|CASC23|lncRNA|chr11:8011277:8012268:-	0	-
#Deleted in new
chr1	180122968	180123225	ENSG00000261817.1|AL390718.1|lncRNA|chr1:180122968:180123225:-	0	-
#Deleted in new
chr11	8013573	8013730	ENSG00000255420.1|CASC23|lncRNA|chr11:8013573:8013730:-	0	-
#Partially deleted in new
chr1	180286982	180287402	ENSG00000230124.6|ACBD6|pc|chr1:180286982:180287402:-	0	-
#Deleted in new
chr1	180326410	180326562	ENSG00000230124.6|ACBD6|pc|chr1:180326410:180326562:-	0	-
#Partially deleted in new
chr11	805178	805230	ENSG00000177595.17|PIDD1|pc|chr11:805178:805230:-	0	-
#Deleted in new
chr1	180558975	180559055	ENSG00000236719.2|OVAAL|lncRNA|chr1:180558975:180559055:+	0	+
#Deleted in new
chr11	805776	806095	ENSG00000177595.17|PIDD1|pc|chr11:805776:806095:-	0	-
#Deleted in new
chr1	18065656	18065847	ENSG00000261781.1|LINC01654|lncRNA|chr1:18065656:18065847:+	0	+
#Deleted in new
chr11	8067422	8067479	ENSG00000248332.6|TUB-AS1|lncRNA|chr11:8067422:8067479:+	0	+
#Deleted in new
chr11	8067609	8067940	ENSG00000248332.6|TUB-AS1|lncRNA|chr11:8067609:8067940:+	0	+
#Deleted in new
chr1	18068191	18068278	ENSG00000261781.1|LINC01654|lncRNA|chr1:18068191:18068278:+	0	+
#Deleted in new
chr11	80751199	80751830	ENSG00000255178.1|AP002759.1|lncRNA|chr11:80751199:80751830:-	0	-
#Deleted in new
chr1	180907800	180908005	ENSG00000225857.5|AL162431.1|lncRNA|chr1:180907800:180908005:+	0	+
#Deleted in new
chr1	180908202	180908291	ENSG00000225857.5|AL162431.1|lncRNA|chr1:180908202:180908291:+	0	+
#Deleted in new
chr1	180908691	180908771	ENSG00000225857.5|AL162431.1|lncRNA|chr1:180908691:180908771:+	0	+
#Deleted in new
chr1	180908872	180908942	ENSG00000225857.5|AL162431.1|lncRNA|chr1:180908872:180908942:+	0	+
#Partially deleted in new
chr1	180908872	180909166	ENSG00000225857.5|AL162431.1|lncRNA|chr1:180908872:180909166:+	0	+
#Deleted in new
chr1	180954667	180954887	ENSG00000232586.1|KIAA1614-AS1|lncRNA|chr1:180954667:180954887:-	0	-
#Partially deleted in new
chr11	810397	810497	ENSG00000177600.8|RPLP2|pc|chr11:810397:810497:+	0	+
#Partially deleted in new
chr11	811371	811645	ENSG00000177600.8|RPLP2|pc|chr11:811371:811645:+	0	+
#Deleted in new
chr1	181174483	181174575	ENSG00000237292.1|LINC01732|lncRNA|chr1:181174483:181174575:+	0	+
#Deleted in new
chr1	181175336	181175433	ENSG00000237292.1|LINC01732|lncRNA|chr1:181175336:181175433:+	0	+
#Deleted in new
chr1	181175336	181175466	ENSG00000237292.1|LINC01732|lncRNA|chr1:181175336:181175466:+	0	+
#Deleted in new
chr1	181175709	181175834	ENSG00000237292.1|LINC01732|lncRNA|chr1:181175709:181175834:+	0	+
#Deleted in new
chr1	181181888	181182207	ENSG00000237292.1|LINC01732|lncRNA|chr1:181181888:181182207:+	0	+
#Deleted in new
chr1	181181888	181182208	ENSG00000237292.1|LINC01732|lncRNA|chr1:181181888:181182208:+	0	+
#Deleted in new
chr1	181190470	181190808	ENSG00000225359.1|AL358393.1|lncRNA|chr1:181190470:181190808:-	0	-
#Partially deleted in new
chr1	181190955	181191149	ENSG00000225359.1|AL358393.1|lncRNA|chr1:181190955:181191149:-	0	-
#Partially deleted in new
chr11	812078	812633	ENSG00000177600.8|RPLP2|pc|chr11:812078:812633:+	0	+
#Deleted in new
chr11	8135581	8135844	ENSG00000166405.14|RIC3|pc|chr11:8135581:8135844:-	0	-
#Deleted in new
chr11	8135786	8135844	ENSG00000166405.14|RIC3|pc|chr11:8135786:8135844:-	0	-
#Deleted in new
chr1	18166928	18167024	ENSG00000230035.2|AL359738.1|lncRNA|chr1:18166928:18167024:-	0	-
#Partially deleted in new
chr1	18167746	18167763	ENSG00000230035.2|AL359738.1|lncRNA|chr1:18167746:18167763:-	0	-
#Deleted in new
chr1	18176152	18176174	ENSG00000230035.2|AL359738.1|lncRNA|chr1:18176152:18176174:-	0	-
#Deleted in new
chr11	81882153	81882296	ENSG00000245832.6|MIR4300HG|lncRNA|chr11:81882153:81882296:-	0	-
#Deleted in new
chr11	81970993	81971248	ENSG00000254511.1|AP002802.1|lncRNA|chr11:81970993:81971248:+	0	+
#Deleted in new
chr11	81987726	81987813	ENSG00000254511.1|AP002802.1|lncRNA|chr11:81987726:81987813:+	0	+
#Partially deleted in new
chr1	182062676	182064901	ENSG00000224810.1|AL355482.1|lncRNA|chr1:182062676:182064901:-	0	-
#Deleted in new
chr11	82096460	82096608	ENSG00000245832.6|MIR4300HG|lncRNA|chr11:82096460:82096608:-	0	-
#Deleted in new
chr11	82099973	82100043	ENSG00000245832.6|MIR4300HG|lncRNA|chr11:82099973:82100043:-	0	-
#Deleted in new
chr11	82099973	82100207	ENSG00000245832.6|MIR4300HG|lncRNA|chr11:82099973:82100207:-	0	-
#Deleted in new
chr11	82100192	82100207	ENSG00000245832.6|MIR4300HG|lncRNA|chr11:82100192:82100207:-	0	-
#Partially deleted in new
chr1	182127810	182127927	ENSG00000232309.1|AL390856.1|lncRNA|chr1:182127810:182127927:-	0	-
#Deleted in new
chr1	182130812	182130877	ENSG00000228918.3|LINC01344|lncRNA|chr1:182130812:182130877:-	0	-
#Deleted in new
chr1	182130988	182131084	ENSG00000228918.3|LINC01344|lncRNA|chr1:182130988:182131084:-	0	-
#Deleted in new
chr1	182131171	182131241	ENSG00000228918.3|LINC01344|lncRNA|chr1:182131171:182131241:-	0	-
#Deleted in new
chr1	182131386	182131484	ENSG00000228918.3|LINC01344|lncRNA|chr1:182131386:182131484:-	0	-
#Partially deleted in new
chr1	182131689	182131810	ENSG00000228918.3|LINC01344|lncRNA|chr1:182131689:182131810:-	0	-
#Deleted in new
chr1	182133328	182133415	ENSG00000228918.3|LINC01344|lncRNA|chr1:182133328:182133415:-	0	-
#Deleted in new
chr1	182153723	182153830	ENSG00000228918.3|LINC01344|lncRNA|chr1:182153723:182153830:-	0	-
#Deleted in new
chr1	182162343	182162443	ENSG00000228918.3|LINC01344|lncRNA|chr1:182162343:182162443:-	0	-
#Deleted in new
chr1	182190119	182190239	ENSG00000228918.3|LINC01344|lncRNA|chr1:182190119:182190239:-	0	-
#Deleted in new
chr1	182219510	182219688	ENSG00000228918.3|LINC01344|lncRNA|chr1:182219510:182219688:-	0	-
#Deleted in new
chr1	182243123	182243196	ENSG00000228918.3|LINC01344|lncRNA|chr1:182243123:182243196:-	0	-
#Deleted in new
chr1	182244354	182244399	ENSG00000228918.3|LINC01344|lncRNA|chr1:182244354:182244399:-	0	-
#Deleted in new
chr1	182313947	182314061	ENSG00000228918.3|LINC01344|lncRNA|chr1:182313947:182314061:-	0	-
#Deleted in new
chr11	82356511	82356628	ENSG00000245832.6|MIR4300HG|lncRNA|chr11:82356511:82356628:-	0	-
#Deleted in new
chr11	82403678	82403913	ENSG00000245832.6|MIR4300HG|lncRNA|chr11:82403678:82403913:-	0	-
#Deleted in new
chr1	182414685	182414815	ENSG00000203729.8|LINC00272|lncRNA|chr1:182414685:182414815:+	0	+
#Deleted in new
chr1	182448246	182448364	ENSG00000121446.18|RGSL1|pc|chr1:182448246:182448364:+	0	+
#Deleted in new
chr1	182449277	182449299	ENSG00000121446.18|RGSL1|pc|chr1:182449277:182449299:+	0	+
#Deleted in new
chr1	182450361	182450576	ENSG00000121446.18|RGSL1|pc|chr1:182450361:182450576:+	0	+
#Deleted in new
chr1	182460623	182460734	ENSG00000121446.18|RGSL1|pc|chr1:182460623:182460734:+	0	+
#Deleted in new
chr1	182460623	182460756	ENSG00000121446.18|RGSL1|pc|chr1:182460623:182460756:+	0	+
#Deleted in new
chr1	182507200	182507266	ENSG00000121446.18|RGSL1|pc|chr1:182507200:182507266:+	0	+
#Deleted in new
chr1	182578120	182580007	ENSG00000135828.11|RNASEL|pc|chr1:182578120:182580007:-	0	-
#Partially deleted in new
chr11	82603742	82604101	ENSG00000255246.1|AP000793.1|lncRNA|chr11:82603742:82604101:-	0	-
#Deleted in new
chr11	82618520	82618630	ENSG00000255246.1|AP000793.1|lncRNA|chr11:82618520:82618630:-	0	-
#Deleted in new
chr11	82642426	82642497	ENSG00000255246.1|AP000793.1|lncRNA|chr11:82642426:82642497:-	0	-
#Deleted in new
chr11	82643219	82643419	ENSG00000255246.1|AP000793.1|lncRNA|chr11:82643219:82643419:-	0	-
#Deleted in new
chr1	182714312	182714544	ENSG00000227181.1|LINC01688|lncRNA|chr1:182714312:182714544:+	0	+
#Deleted in new
chr11	82717788	82718082	ENSG00000245832.6|MIR4300HG|lncRNA|chr11:82717788:82718082:-	0	-
#Deleted in new
chr1	18278844	18278884	ENSG00000117154.11|IGSF21|pc|chr1:18278844:18278884:+	0	+
#Partially deleted in new
chr1	182792230	182792286	ENSG00000135838.13|NPL|pc|chr1:182792230:182792286:+	0	+
#Partially deleted in new
chr1	182792231	182792286	ENSG00000135838.13|NPL|pc|chr1:182792231:182792286:+	0	+
#Deleted in new
chr1	182792258	182792286	ENSG00000135838.13|NPL|pc|chr1:182792258:182792286:+	0	+
#Partially deleted in new
chr1	182809184	182809307	ENSG00000135838.13|NPL|pc|chr1:182809184:182809307:+	0	+
#Deleted in new
chr1	182809842	182809970	ENSG00000135838.13|NPL|pc|chr1:182809842:182809970:+	0	+
#Deleted in new
chr11	82816763	82817146	ENSG00000255382.1|AP001646.3|lncRNA|chr11:82816763:82817146:+	0	+
#Partially deleted in new
chr1	182828723	182830384	ENSG00000135838.13|NPL|pc|chr1:182828723:182830384:+	0	+
#Deleted in new
chr1	182829602	182829679	ENSG00000135838.13|NPL|pc|chr1:182829602:182829679:+	0	+
#Deleted in new
chr1	182829602	182829909	ENSG00000135838.13|NPL|pc|chr1:182829602:182829909:+	0	+
#Deleted in new
chr1	182829602	182830384	ENSG00000135838.13|NPL|pc|chr1:182829602:182830384:+	0	+
#Deleted in new
chr11	82843183	82843304	ENSG00000137509.10|PRCP|pc|chr11:82843183:82843304:-	0	-
#Partially deleted in new
chr1	182876913	182877047	ENSG00000135829.16|DHX9|pc|chr1:182876913:182877047:+	0	+
#Partially deleted in new
chr1	182877417	182878173	ENSG00000135829.16|DHX9|pc|chr1:182877417:182878173:+	0	+
#Deleted in new
chr11	82909257	82909331	ENSG00000165490.12|DDIAS|pc|chr11:82909257:82909331:+	0	+
#Deleted in new
chr11	82913282	82913386	ENSG00000165490.12|DDIAS|pc|chr11:82913282:82913386:+	0	+
#Deleted in new
chr11	82913286	82913386	ENSG00000165490.12|DDIAS|pc|chr11:82913286:82913386:+	0	+
#Deleted in new
chr11	82913654	82913746	ENSG00000165490.12|DDIAS|pc|chr11:82913654:82913746:+	0	+
#Deleted in new
chr11	82913956	82914031	ENSG00000165490.12|DDIAS|pc|chr11:82913956:82914031:+	0	+
#Deleted in new
chr11	82913956	82914170	ENSG00000165490.12|DDIAS|pc|chr11:82913956:82914170:+	0	+
#Deleted in new
chr11	82922613	82922682	ENSG00000165490.12|DDIAS|pc|chr11:82922613:82922682:+	0	+
#Deleted in new
chr1	182950522	182950681	ENSG00000157060.15|SHCBP1L|pc|chr1:182950522:182950681:-	0	-
#Deleted in new
chr1	182951936	182951984	ENSG00000157060.15|SHCBP1L|pc|chr1:182951936:182951984:-	0	-
#Deleted in new
chr1	182951936	182951989	ENSG00000157060.15|SHCBP1L|pc|chr1:182951936:182951989:-	0	-
#Deleted in new
chr11	82957064	82957115	ENSG00000137509.10|PRCP|pc|chr11:82957064:82957115:-	0	-
#Deleted in new
chr11	82963680	82963741	ENSG00000254698.1|AP000893.2|lncRNA|chr11:82963680:82963741:-	0	-
#Deleted in new
chr11	82970481	82970584	ENSG00000137509.10|PRCP|pc|chr11:82970481:82970584:-	0	-
#Deleted in new
chr11	83038743	83039115	ENSG00000254698.1|AP000893.2|lncRNA|chr11:83038743:83039115:-	0	-
#Deleted in new
chr11	83060076	83060178	ENSG00000137502.9|RAB30|pc|chr11:83060076:83060178:-	0	-
#Partially deleted in new
chr11	83077033	83077173	ENSG00000246067.7|RAB30-AS1|lncRNA|chr11:83077033:83077173:+	0	+
#Partially deleted in new
chr11	83083686	83084138	ENSG00000279900.1|AP001767.4|lncRNA|chr11:83083686:83084138:+	0	+
#Deleted in new
chr11	83096068	83096147	ENSG00000255503.1|AP001767.3|lncRNA|chr11:83096068:83096147:-	0	-
#Deleted in new
chr11	83097134	83097196	ENSG00000255503.1|AP001767.3|lncRNA|chr11:83097134:83097196:-	0	-
#Deleted in new
chr1	183141141	183141282	ENSG00000224468.3|AL354953.1|lncRNA|chr1:183141141:183141282:-	0	-
#Partially deleted in new
chr11	83180143	83180609	ENSG00000254676.1|AP000873.4|lncRNA|chr11:83180143:83180609:+	0	+
#Partially deleted in new
chr11	83190905	83193200	ENSG00000247137.8|AP000873.2|lncRNA|chr11:83190905:83193200:-	0	-
#Deleted in new
chr11	83191028	83191168	ENSG00000247137.8|AP000873.2|lncRNA|chr11:83191028:83191168:-	0	-
#Deleted in new
chr11	83191054	83191097	ENSG00000247137.8|AP000873.2|lncRNA|chr11:83191054:83191097:-	0	-
#Deleted in new
chr11	83191062	83191168	ENSG00000247137.8|AP000873.2|lncRNA|chr11:83191062:83191168:-	0	-
#Deleted in new
chr11	83191064	83191168	ENSG00000247137.8|AP000873.2|lncRNA|chr11:83191064:83191168:-	0	-
#Deleted in new
chr11	83192019	83192197	ENSG00000247137.8|AP000873.2|lncRNA|chr11:83192019:83192197:-	0	-
#Deleted in new
chr11	83192123	83192197	ENSG00000247137.8|AP000873.2|lncRNA|chr11:83192123:83192197:-	0	-
#Partially deleted in new
chr11	83192136	83192816	ENSG00000247137.8|AP000873.2|lncRNA|chr11:83192136:83192816:-	0	-
#Deleted in new
chr11	83192272	83192541	ENSG00000247137.8|AP000873.2|lncRNA|chr11:83192272:83192541:-	0	-
#Deleted in new
chr11	83192427	83192541	ENSG00000247137.8|AP000873.2|lncRNA|chr11:83192427:83192541:-	0	-
#Split in new
chr11	83212652	83215200	ENSG00000137494.13|ANKRD42|pc|chr11:83212652:83215200:+	0	+
#Split in new
chr11	83212978	83215200	ENSG00000137494.13|ANKRD42|pc|chr11:83212978:83215200:+	0	+
#Partially deleted in new
chr11	83259096	83261966	ENSG00000137500.9|CCDC90B|pc|chr11:83259096:83261966:-	0	-
#Deleted in new
chr11	83260056	83260694	ENSG00000137494.13|ANKRD42|pc|chr11:83260056:83260694:+	0	+
#Deleted in new
chr11	83266866	83267038	ENSG00000137500.9|CCDC90B|pc|chr11:83266866:83267038:-	0	-
#Deleted in new
chr11	83266866	83267472	ENSG00000137500.9|CCDC90B|pc|chr11:83266866:83267472:-	0	-
#Deleted in new
chr11	83304922	83305124	ENSG00000255234.5|AP000446.1|lncRNA|chr11:83304922:83305124:+	0	+
#Deleted in new
chr11	83340466	83340521	ENSG00000255234.5|AP000446.1|lncRNA|chr11:83340466:83340521:+	0	+
#Deleted in new
chr11	83419535	83419693	ENSG00000255234.5|AP000446.1|lncRNA|chr11:83419535:83419693:+	0	+
#Deleted in new
chr11	83421568	83423516	ENSG00000255234.5|AP000446.1|lncRNA|chr11:83421568:83423516:+	0	+
#Deleted in new
chr11	834457	834591	ENSG00000177697.17|CD151|pc|chr11:834457:834591:+	0	+
#Deleted in new
chr11	834526	834591	ENSG00000177697.17|CD151|pc|chr11:834526:834591:+	0	+
#Deleted in new
chr11	834529	834591	ENSG00000177697.17|CD151|pc|chr11:834529:834591:+	0	+
#Deleted in new
chr11	834529	834745	ENSG00000177697.17|CD151|pc|chr11:834529:834745:+	0	+
#Deleted in new
chr11	834529	834803	ENSG00000177697.17|CD151|pc|chr11:834529:834803:+	0	+
#Partially deleted in new
chr1	183460873	183461668	ENSG00000232860.7|SMG7-AS1|lncRNA|chr1:183460873:183461668:-	0	-
#Partially deleted in new
chr1	183461745	183461839	ENSG00000232860.7|SMG7-AS1|lncRNA|chr1:183461745:183461839:-	0	-
#Partially deleted in new
chr11	835550	836153	ENSG00000177697.17|CD151|pc|chr11:835550:836153:+	0	+
#Deleted in new
chr1	183590839	183590876	ENSG00000116701.14|NCF2|pc|chr1:183590839:183590876:-	0	-
#Deleted in new
chr1	183597768	183597855	ENSG00000116698.21|SMG7|pc|chr1:183597768:183597855:+	0	+
#Deleted in new
chr1	183598010	183598246	ENSG00000116698.21|SMG7|pc|chr1:183598010:183598246:+	0	+
#Deleted in new
chr11	83643601	83643714	ENSG00000255311.5|AP002370.2|lncRNA|chr11:83643601:83643714:+	0	+
#Deleted in new
chr1	183754417	183754579	ENSG00000227554.1|AL590422.1|lncRNA|chr1:183754417:183754579:-	0	-
#Deleted in new
chr1	183754663	183754770	ENSG00000227554.1|AL590422.1|lncRNA|chr1:183754663:183754770:-	0	-
#Deleted in new
chr1	183754842	183754937	ENSG00000227554.1|AL590422.1|lncRNA|chr1:183754842:183754937:-	0	-
#Deleted in new
chr1	18388415	18388514	ENSG00000225387.1|AL591896.1|lncRNA|chr1:18388415:18388514:+	0	+
#Deleted in new
chr1	1839628	1839682	ENSG00000078369.17|GNB1|pc|chr1:1839628:1839682:-	0	-
#Deleted in new
chr11	839655	839831	ENSG00000177697.17|CD151|pc|chr11:839655:839831:+	0	+
#Deleted in new
chr1	184058160	184058240	ENSG00000198860.11|TSEN15|pc|chr1:184058160:184058240:+	0	+
#Deleted in new
chr1	184070615	184070732	ENSG00000198860.11|TSEN15|pc|chr1:184070615:184070732:+	0	+
#Deleted in new
chr1	184070615	184070812	ENSG00000198860.11|TSEN15|pc|chr1:184070615:184070812:+	0	+
#Partially deleted in new
chr1	184072826	184073846	ENSG00000198860.11|TSEN15|pc|chr1:184072826:184073846:+	0	+
#Deleted in new
chr1	184329070	184329174	ENSG00000231791.1|AL445228.1|lncRNA|chr1:184329070:184329174:+	0	+
#Partially deleted in new
chr11	8433859	8434243	ENSG00000130413.15|STK33|pc|chr11:8433859:8434243:-	0	-
#Deleted in new
chr1	184542545	184542648	ENSG00000116667.12|C1orf21|pc|chr1:184542545:184542648:+	0	+
#Deleted in new
chr1	184592224	184592248	ENSG00000116667.12|C1orf21|pc|chr1:184592224:184592248:+	0	+
#Partially deleted in new
chr11	8464708	8467654	ENSG00000130413.15|STK33|pc|chr11:8464708:8467654:-	0	-
#Deleted in new
chr11	847169	847300	ENSG00000214063.10|TSPAN4|pc|chr11:847169:847300:+	0	+
#Deleted in new
chr11	847196	847300	ENSG00000214063.10|TSPAN4|pc|chr11:847196:847300:+	0	+
#Deleted in new
chr11	847200	847300	ENSG00000214063.10|TSPAN4|pc|chr11:847200:847300:+	0	+
#Deleted in new
chr11	84762110	84762168	ENSG00000254787.1|AP001825.1|lncRNA|chr11:84762110:84762168:+	0	+
#Deleted in new
chr11	84936688	84936741	ENSG00000255555.1|AP000857.2|lncRNA|chr11:84936688:84936741:+	0	+
#Deleted in new
chr11	84955339	84955705	ENSG00000255555.1|AP000857.2|lncRNA|chr11:84955339:84955705:+	0	+
#Deleted in new
chr1	185001526	185001627	ENSG00000260976.1|LINC01633|lncRNA|chr1:185001526:185001627:+	0	+
#Deleted in new
chr1	185292383	185294372	ENSG00000279838.1|AL356273.3|lncRNA|chr1:185292383:185294372:-	0	-
#Deleted in new
chr11	85469337	85469722	ENSG00000150672.16|DLG2|pc|chr11:85469337:85469722:-	0	-
#Partially deleted in new
chr1	185518650	185520986	ENSG00000279401.1|AL133383.2|lncRNA|chr1:185518650:185520986:+	0	+
#Deleted in new
chr11	85524990	85525022	ENSG00000150672.16|DLG2|pc|chr11:85524990:85525022:-	0	-
#Deleted in new
chr1	185607183	185607401	ENSG00000228309.6|LINC01350|lncRNA|chr1:185607183:185607401:-	0	-
#Deleted in new
chr1	185621460	185621586	ENSG00000228309.6|LINC01350|lncRNA|chr1:185621460:185621586:-	0	-
#Deleted in new
chr1	185622726	185622839	ENSG00000228309.6|LINC01350|lncRNA|chr1:185622726:185622839:-	0	-
#Deleted in new
chr1	185626491	185626555	ENSG00000228309.6|LINC01350|lncRNA|chr1:185626491:185626555:-	0	-
#Partially deleted in new
chr11	85631144	85631316	ENSG00000171204.12|TMEM126B|pc|chr11:85631144:85631316:+	0	+
#Deleted in new
chr1	185656476	185657168	ENSG00000261729.1|AL133383.1|lncRNA|chr1:185656476:185657168:+	0	+
#Deleted in new
chr11	85682716	85682863	ENSG00000137504.13|CREBZF|pc|chr11:85682716:85682863:-	0	-
#Deleted in new
chr11	85682856	85682908	ENSG00000137504.13|CREBZF|pc|chr11:85682856:85682908:-	0	-
#Split in new
chr11	856879	858691	ENSG00000250397.2|AP006623.1|lncRNA|chr11:856879:858691:-	0	-
#Deleted in new
chr11	85708037	85708150	ENSG00000137501.17|SYTL2|pc|chr11:85708037:85708150:-	0	-
#Deleted in new
chr11	8580813	8580960	ENSG00000130413.15|STK33|pc|chr11:8580813:8580960:-	0	-
#Partially deleted in new
chr11	85852556	85854943	ENSG00000279742.1|AP000974.1|lncRNA|chr11:85852556:85854943:-	0	-
#Deleted in new
chr11	85912648	85912741	ENSG00000150676.12|CCDC83|pc|chr11:85912648:85912741:+	0	+
#Deleted in new
chr11	85923305	85923331	ENSG00000255005.1|AP003128.1|lncRNA|chr11:85923305:85923331:-	0	-
#Deleted in new
chr11	85923578	85923682	ENSG00000255005.1|AP003128.1|lncRNA|chr11:85923578:85923682:-	0	-
#Deleted in new
chr11	859546	859795	ENSG00000250397.2|AP006623.1|lncRNA|chr11:859546:859795:-	0	-
#Deleted in new
chr1	186176813	186176908	ENSG00000224691.1|AL133553.1|lncRNA|chr1:186176813:186176908:-	0	-
#Deleted in new
chr1	186177044	186177302	ENSG00000224691.1|AL133553.1|lncRNA|chr1:186177044:186177302:-	0	-
#Partially deleted in new
chr11	86192786	86192914	ENSG00000254699.1|AP003097.2|lncRNA|chr11:86192786:86192914:-	0	-
#Deleted in new
chr11	862296	862329	ENSG00000214063.10|TSPAN4|pc|chr11:862296:862329:+	0	+
#Partially deleted in new
chr11	86267894	86268561	ENSG00000074266.19|EED|pc|chr11:86267894:86268561:+	0	+
#Deleted in new
chr11	86326512	86326676	ENSG00000149196.15|HIKESHI|pc|chr11:86326512:86326676:+	0	+
#Partially deleted in new
chr11	863271	864511	ENSG00000214063.10|TSPAN4|pc|chr11:863271:864511:+	0	+
#Deleted in new
chr1	186400571	186401455	ENSG00000262180.1|OCLM|pc|chr1:186400571:186401455:+	0	+
#Partially deleted in new
chr11	86434923	86437282	ENSG00000278989.1|AP001148.1|lncRNA|chr11:86434923:86437282:-	0	-
#Deleted in new
chr1	186466287	186466367	ENSG00000229739.2|AL596220.1|lncRNA|chr1:186466287:186466367:+	0	+
#Deleted in new
chr1	186470270	186470291	ENSG00000229739.2|AL596220.1|lncRNA|chr1:186470270:186470291:+	0	+
#Deleted in new
chr1	186521772	186522304	ENSG00000273198.1|AL096803.3|lncRNA|chr1:186521772:186522304:+	0	+
#Deleted in new
chr11	86622724	86622867	ENSG00000254733.1|AP001831.1|lncRNA|chr11:86622724:86622867:+	0	+
#Deleted in new
chr11	8663128	8663248	ENSG00000166436.15|TRIM66|pc|chr11:8663128:8663248:-	0	-
#Partially deleted in new
chr11	86667738	86668242	ENSG00000151376.16|ME3|pc|chr11:86667738:86668242:-	0	-
#Deleted in new
chr11	86713689	86714092	ENSG00000254731.1|AP003059.1|lncRNA|chr11:86713689:86714092:+	0	+
#Deleted in new
chr11	86761950	86762106	ENSG00000255250.1|AP003059.2|lncRNA|chr11:86761950:86762106:+	0	+
#Deleted in new
chr11	86763591	86763679	ENSG00000255250.1|AP003059.2|lncRNA|chr11:86763591:86763679:+	0	+
#Deleted in new
chr11	8680666	8680913	ENSG00000254900.1|AC091053.2|lncRNA|chr11:8680666:8680913:+	0	+
#Partially deleted in new
chr11	8683201	8683779	ENSG00000166441.12|RPL27A|pc|chr11:8683201:8683779:+	0	+
#Deleted in new
chr11	868394	868671	ENSG00000177830.17|CHID1|pc|chr11:868394:868671:-	0	-
#Deleted in new
chr11	868398	868671	ENSG00000177830.17|CHID1|pc|chr11:868398:868671:-	0	-
#Split in new
chr11	8685677	8689872	ENSG00000166441.12|RPL27A|pc|chr11:8685677:8689872:+	0	+
#Deleted in new
chr11	8689129	8689303	ENSG00000166441.12|RPL27A|pc|chr11:8689129:8689303:+	0	+
#Partially deleted in new
chr11	86908989	86912238	ENSG00000280339.1|AP001528.3|lncRNA|chr11:86908989:86912238:-	0	-
#Deleted in new
chr11	8697923	8697964	ENSG00000166444.18|ST5|pc|chr11:8697923:8697964:-	0	-
#Deleted in new
chr11	8699856	8700012	ENSG00000166444.18|ST5|pc|chr11:8699856:8700012:-	0	-
#Deleted in new
chr11	8699965	8700012	ENSG00000166444.18|ST5|pc|chr11:8699965:8700012:-	0	-
#Deleted in new
chr1	187092841	187092946	ENSG00000236030.1|LINC01036|lncRNA|chr1:187092841:187092946:+	0	+
#Deleted in new
chr11	87121057	87121596	ENSG00000279836.1|AP002967.1|lncRNA|chr11:87121057:87121596:+	0	+
#Deleted in new
chr11	87277152	87277448	ENSG00000166575.16|TMEM135|pc|chr11:87277152:87277448:+	0	+
#Deleted in new
chr1	187303465	187303539	ENSG00000236030.1|LINC01036|lncRNA|chr1:187303465:187303539:+	0	+
#Deleted in new
chr1	187470070	187470192	ENSG00000231599.1|LINC01037|lncRNA|chr1:187470070:187470192:+	0	+
#Deleted in new
chr1	187470070	187470239	ENSG00000231599.1|LINC01037|lncRNA|chr1:187470070:187470239:+	0	+
#Deleted in new
chr11	874721	874910	ENSG00000177830.17|CHID1|pc|chr11:874721:874910:-	0	-
#Deleted in new
chr1	187480292	187480614	ENSG00000272827.1|AL391813.2|lncRNA|chr1:187480292:187480614:+	0	+
#Deleted in new
chr1	187641225	187641269	ENSG00000230426.2|ERVMER61-1|lncRNA|chr1:187641225:187641269:+	0	+
#Deleted in new
chr1	187641375	187641481	ENSG00000230426.2|ERVMER61-1|lncRNA|chr1:187641375:187641481:+	0	+
#Partially deleted in new
chr1	187641615	187643849	ENSG00000230426.2|ERVMER61-1|lncRNA|chr1:187641615:187643849:+	0	+
#Partially deleted in new
chr1	187641617	187643860	ENSG00000230426.2|ERVMER61-1|lncRNA|chr1:187641617:187643860:+	0	+
#Deleted in new
chr11	8771673	8771919	ENSG00000166444.18|ST5|pc|chr11:8771673:8771919:-	0	-
#Partially deleted in new
chr11	8776191	8776679	ENSG00000166444.18|ST5|pc|chr11:8776191:8776679:-	0	-
#Deleted in new
chr11	8784018	8784208	ENSG00000255159.1|AC026894.1|lncRNA|chr11:8784018:8784208:+	0	+
#Deleted in new
chr11	8784540	8784557	ENSG00000255159.1|AC026894.1|lncRNA|chr11:8784540:8784557:+	0	+
#Deleted in new
chr11	8785155	8785462	ENSG00000255159.1|AC026894.1|lncRNA|chr11:8785155:8785462:+	0	+
#Deleted in new
chr11	8785155	8785771	ENSG00000255159.1|AC026894.1|lncRNA|chr11:8785155:8785771:+	0	+
#Deleted in new
chr11	8785400	8785462	ENSG00000255159.1|AC026894.1|lncRNA|chr11:8785400:8785462:+	0	+
#Deleted in new
chr11	8787053	8787286	ENSG00000255159.1|AC026894.1|lncRNA|chr11:8787053:8787286:+	0	+
#Deleted in new
chr11	88050105	88050182	ENSG00000255516.1|AP005436.3|lncRNA|chr11:88050105:88050182:+	0	+
#Deleted in new
chr11	882327	882515	ENSG00000177830.17|CHID1|pc|chr11:882327:882515:-	0	-
#Partially deleted in new
chr11	8831555	8831688	ENSG00000166444.18|ST5|pc|chr11:8831555:8831688:-	0	-
#Deleted in new
chr11	8839309	8839350	ENSG00000166444.18|ST5|pc|chr11:8839309:8839350:-	0	-
#Deleted in new
chr1	188508537	188508665	ENSG00000225006.1|AL929288.1|lncRNA|chr1:188508537:188508665:+	0	+
#Deleted in new
chr1	188529195	188529377	ENSG00000225006.1|AL929288.1|lncRNA|chr1:188529195:188529377:+	0	+
#Deleted in new
chr1	188535755	188535858	ENSG00000225006.1|AL929288.1|lncRNA|chr1:188535755:188535858:+	0	+
#Deleted in new
chr11	8857342	8857436	ENSG00000166444.18|ST5|pc|chr11:8857342:8857436:-	0	-
#Deleted in new
chr1	188705622	188706285	ENSG00000237283.1|AL691515.1|lncRNA|chr1:188705622:188706285:-	0	-
#Deleted in new
chr1	188710810	188710880	ENSG00000237283.1|AL691515.1|lncRNA|chr1:188710810:188710880:-	0	-
#Deleted in new
chr1	188869476	188869748	ENSG00000238054.1|AL691515.2|lncRNA|chr1:188869476:188869748:-	0	-
#Deleted in new
chr1	188887240	188887434	ENSG00000238054.1|AL691515.2|lncRNA|chr1:188887240:188887434:-	0	-
#Deleted in new
chr1	188905687	188905926	ENSG00000226486.1|LINC01035|lncRNA|chr1:188905687:188905926:+	0	+
#Deleted in new
chr11	88925766	88925831	ENSG00000168959.14|GRM5|pc|chr11:88925766:88925831:-	0	-
#Deleted in new
chr11	8895533	8895581	ENSG00000166444.18|ST5|pc|chr11:8895533:8895581:-	0	-
#Deleted in new
chr11	88984701	88984874	ENSG00000168959.14|GRM5|pc|chr11:88984701:88984874:-	0	-
#Deleted in new
chr11	89009034	89009098	ENSG00000168959.14|GRM5|pc|chr11:89009034:89009098:-	0	-
#Deleted in new
chr1	189036717	189037262	ENSG00000226486.1|LINC01035|lncRNA|chr1:189036717:189037262:+	0	+
#Partially deleted in new
chr11	8910820	8910951	ENSG00000166444.18|ST5|pc|chr11:8910820:8910951:-	0	-
#Deleted in new
chr11	89200262	89200611	ENSG00000077498.8|TYR|pc|chr11:89200262:89200611:+	0	+
#Deleted in new
chr11	8927502	8927682	ENSG00000176029.13|C11orf16|pc|chr11:8927502:8927682:-	0	-
#Deleted in new
chr11	8927502	8927708	ENSG00000176029.13|C11orf16|pc|chr11:8927502:8927708:-	0	-
#Deleted in new
chr11	8927570	8927708	ENSG00000176029.13|C11orf16|pc|chr11:8927570:8927708:-	0	-
#Deleted in new
chr11	89300708	89301477	ENSG00000279603.1|AP000720.2|lncRNA|chr11:89300708:89301477:-	0	-
#Deleted in new
chr11	89497996	89498187	ENSG00000086991.12|NOX4|pc|chr11:89497996:89498187:-	0	-
#Deleted in new
chr11	89546636	89546695	ENSG00000255429.1|AP003400.1|lncRNA|chr11:89546636:89546695:-	0	-
#Deleted in new
chr11	89589439	89589611	ENSG00000255429.1|AP003400.1|lncRNA|chr11:89589439:89589611:-	0	-
#Deleted in new
chr11	8966540	8966656	ENSG00000254860.5|TMEM9B-AS1|lncRNA|chr11:8966540:8966656:+	0	+
#Deleted in new
chr11	8966579	8966656	ENSG00000254860.5|TMEM9B-AS1|lncRNA|chr11:8966579:8966656:+	0	+
#Deleted in new
chr11	8967838	8968041	ENSG00000254860.5|TMEM9B-AS1|lncRNA|chr11:8967838:8968041:+	0	+
#Deleted in new
chr11	89704163	89704658	ENSG00000279163.1|AP003122.6|lncRNA|chr11:89704163:89704658:+	0	+
#Deleted in new
chr11	89711409	89711505	ENSG00000214414.9|TRIM77|pc|chr11:89711409:89711505:+	0	+
#Deleted in new
chr11	89754584	89754953	ENSG00000254971.1|AP003122.2|lncRNA|chr11:89754584:89754953:-	0	-
#Deleted in new
chr11	8976164	8976283	ENSG00000254860.5|TMEM9B-AS1|lncRNA|chr11:8976164:8976283:+	0	+
#Deleted in new
chr11	8977418	8977472	ENSG00000254860.5|TMEM9B-AS1|lncRNA|chr11:8977418:8977472:+	0	+
#Deleted in new
chr11	8977424	8977527	ENSG00000254860.5|TMEM9B-AS1|lncRNA|chr11:8977424:8977527:+	0	+
#Deleted in new
chr1	189775464	189775565	ENSG00000232212.1|LINC01701|lncRNA|chr1:189775464:189775565:+	0	+
#Deleted in new
chr1	189777259	189777337	ENSG00000232212.1|LINC01701|lncRNA|chr1:189777259:189777337:+	0	+
#Deleted in new
chr11	89800965	89800988	ENSG00000168930.13|TRIM49|pc|chr11:89800965:89800988:-	0	-
#Deleted in new
chr11	89801701	89801932	ENSG00000168930.13|TRIM49|pc|chr11:89801701:89801932:-	0	-
#Deleted in new
chr11	89803697	89803793	ENSG00000168930.13|TRIM49|pc|chr11:89803697:89803793:-	0	-
#Deleted in new
chr11	89807098	89807220	ENSG00000168930.13|TRIM49|pc|chr11:89807098:89807220:-	0	-
#Deleted in new
chr11	89807098	89807284	ENSG00000168930.13|TRIM49|pc|chr11:89807098:89807284:-	0	-
#Deleted in new
chr11	89808436	89808575	ENSG00000168930.13|TRIM49|pc|chr11:89808436:89808575:-	0	-
#Deleted in new
chr1	189814831	189814918	ENSG00000232212.1|LINC01701|lncRNA|chr1:189814831:189814918:+	0	+
#Deleted in new
chr1	189868000	189868212	ENSG00000238270.1|AL591504.1|lncRNA|chr1:189868000:189868212:-	0	-
#Deleted in new
chr1	189868326	189868528	ENSG00000238270.1|AL591504.1|lncRNA|chr1:189868326:189868528:-	0	-
#Partially deleted in new
chr11	89869281	89871114	ENSG00000189253.7|TRIM64B|pc|chr11:89869281:89871114:-	0	-
#Deleted in new
chr11	89872214	89872312	ENSG00000189253.7|TRIM64B|pc|chr11:89872214:89872312:-	0	-
#Deleted in new
chr11	89873267	89873290	ENSG00000189253.7|TRIM64B|pc|chr11:89873267:89873290:-	0	-
#Deleted in new
chr11	89914174	89914197	ENSG00000223417.8|TRIM49D1|pc|chr11:89914174:89914197:-	0	-
#Deleted in new
chr11	89914911	89915142	ENSG00000223417.8|TRIM49D1|pc|chr11:89914911:89915142:-	0	-
#Deleted in new
chr11	89916918	89917014	ENSG00000223417.8|TRIM49D1|pc|chr11:89916918:89917014:-	0	-
#Deleted in new
chr11	89920298	89920408	ENSG00000223417.8|TRIM49D1|pc|chr11:89920298:89920408:-	0	-
#Deleted in new
chr11	89920298	89920428	ENSG00000223417.8|TRIM49D1|pc|chr11:89920298:89920428:-	0	-
#Deleted in new
chr11	89920298	89920488	ENSG00000223417.8|TRIM49D1|pc|chr11:89920298:89920488:-	0	-
#Deleted in new
chr11	89921632	89921767	ENSG00000223417.8|TRIM49D1|pc|chr11:89921632:89921767:-	0	-
#Deleted in new
chr11	89924063	89924173	ENSG00000233802.8|TRIM49D2|pc|chr11:89924063:89924173:+	0	+
#Deleted in new
chr11	89927457	89927553	ENSG00000233802.8|TRIM49D2|pc|chr11:89927457:89927553:+	0	+
#Deleted in new
chr11	89929329	89929560	ENSG00000233802.8|TRIM49D2|pc|chr11:89929329:89929560:+	0	+
#Deleted in new
chr11	89930274	89930297	ENSG00000233802.8|TRIM49D2|pc|chr11:89930274:89930297:+	0	+
#Duplicated in new
chr11	89932385	89932937	ENSG00000233802.8|TRIM49D2|pc|chr11:89932385:89932937:+	0	+
#Deleted in new
chr11	89971232	89971255	ENSG00000204450.7|TRIM64|pc|chr11:89971232:89971255:+	0	+
#Deleted in new
chr11	89972196	89972294	ENSG00000204450.7|TRIM64|pc|chr11:89972196:89972294:+	0	+
#Partially deleted in new
chr11	89973395	89975228	ENSG00000204450.7|TRIM64|pc|chr11:89973395:89975228:+	0	+
#Deleted in new
chr11	90031105	90031244	ENSG00000204449.3|TRIM49C|pc|chr11:90031105:90031244:+	0	+
#Deleted in new
chr11	90032396	90032582	ENSG00000204449.3|TRIM49C|pc|chr11:90032396:90032582:+	0	+
#Deleted in new
chr11	90035887	90035983	ENSG00000204449.3|TRIM49C|pc|chr11:90035887:90035983:+	0	+
#Deleted in new
chr11	90037748	90037979	ENSG00000204449.3|TRIM49C|pc|chr11:90037748:90037979:+	0	+
#Deleted in new
chr11	90038692	90038715	ENSG00000204449.3|TRIM49C|pc|chr11:90038692:90038715:+	0	+
#Deleted in new
chr11	90125657	90126061	ENSG00000279299.1|AP000648.2|lncRNA|chr11:90125657:90126061:+	0	+
#Partially deleted in new
chr11	90191557	90192611	ENSG00000077616.10|NAALAD2|pc|chr11:90191557:90192611:+	0	+
#Partially deleted in new
chr11	90191557	90192894	ENSG00000077616.10|NAALAD2|pc|chr11:90191557:90192894:+	0	+
#Partially deleted in new
chr11	90193613	90198120	ENSG00000280385.1|AP000648.3|lncRNA|chr11:90193613:90198120:+	0	+
#Deleted in new
chr11	90216463	90216553	ENSG00000110172.11|CHORDC1|pc|chr11:90216463:90216553:-	0	-
#Deleted in new
chr11	90251231	90251317	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90251231:90251317:+	0	+
#Deleted in new
chr11	90251284	90251317	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90251284:90251317:+	0	+
#Partially deleted in new
chr1	190302702	190302791	ENSG00000225811.1|AL354771.1|lncRNA|chr1:190302702:190302791:+	0	+
#Deleted in new
chr1	190342428	190342532	ENSG00000225811.1|AL354771.1|lncRNA|chr1:190342428:190342532:+	0	+
#Deleted in new
chr1	190342696	190342755	ENSG00000225811.1|AL354771.1|lncRNA|chr1:190342696:190342755:+	0	+
#Deleted in new
chr1	190362062	190362270	ENSG00000225811.1|AL354771.1|lncRNA|chr1:190362062:190362270:+	0	+
#Deleted in new
chr11	903655	903753	ENSG00000177830.17|CHID1|pc|chr11:903655:903753:-	0	-
#Deleted in new
chr11	903703	903778	ENSG00000177830.17|CHID1|pc|chr11:903703:903778:-	0	-
#Deleted in new
chr11	90489309	90489352	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90489309:90489352:+	0	+
#Deleted in new
chr11	90491718	90491789	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90491718:90491789:+	0	+
#Deleted in new
chr11	90602804	90602908	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90602804:90602908:+	0	+
#Deleted in new
chr1	190624889	190625033	ENSG00000231175.1|LINC01720|lncRNA|chr1:190624889:190625033:+	0	+
#Deleted in new
chr11	90716396	90716440	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90716396:90716440:+	0	+
#Deleted in new
chr1	190738437	190738510	ENSG00000231175.1|LINC01720|lncRNA|chr1:190738437:190738510:+	0	+
#Deleted in new
chr1	190791513	190791563	ENSG00000231175.1|LINC01720|lncRNA|chr1:190791513:190791563:+	0	+
#Deleted in new
chr1	190793505	190793596	ENSG00000231175.1|LINC01720|lncRNA|chr1:190793505:190793596:+	0	+
#Deleted in new
chr11	90801765	90801862	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90801765:90801862:+	0	+
#Partially deleted in new
chr1	19081348	19082240	ENSG00000127481.14|UBR4|pc|chr1:19081348:19082240:-	0	-
#Deleted in new
chr11	90844879	90844949	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90844879:90844949:+	0	+
#Deleted in new
chr11	90844879	90844957	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90844879:90844957:+	0	+
#Deleted in new
chr11	90852615	90852657	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90852615:90852657:+	0	+
#Deleted in new
chr11	90852615	90852707	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90852615:90852707:+	0	+
#Deleted in new
chr11	90863352	90863359	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90863352:90863359:+	0	+
#Deleted in new
chr11	90863352	90863696	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90863352:90863696:+	0	+
#Deleted in new
chr11	90914869	90915052	ENSG00000261645.5|DISC1FP1|lncRNA|chr11:90914869:90915052:+	0	+
#Deleted in new
chr11	90972315	90972521	ENSG00000280085.1|AP001002.3|lncRNA|chr11:90972315:90972521:-	0	-
#Deleted in new
chr11	91013786	91015299	ENSG00000279209.1|AP001002.1|lncRNA|chr11:91013786:91015299:+	0	+
#Deleted in new
chr11	91093874	91094260	ENSG00000279438.1|AP001002.2|lncRNA|chr11:91093874:91094260:-	0	-
#Deleted in new
chr1	191151509	191154634	ENSG00000261642.1|AL713866.1|lncRNA|chr1:191151509:191154634:+	0	+
#Deleted in new
chr11	91158082	91158287	ENSG00000255187.1|AP003386.1|lncRNA|chr11:91158082:91158287:+	0	+
#Deleted in new
chr11	91166748	91166892	ENSG00000255187.1|AP003386.1|lncRNA|chr11:91166748:91166892:+	0	+
#Deleted in new
chr11	91184933	91185543	ENSG00000280124.1|AP003485.2|lncRNA|chr11:91184933:91185543:-	0	-
#Deleted in new
chr11	91208837	91209590	ENSG00000278980.1|AP003485.1|lncRNA|chr11:91208837:91209590:-	0	-
#Deleted in new
chr1	191221158	191221312	ENSG00000233882.2|LINC01680|lncRNA|chr1:191221158:191221312:-	0	-
#Deleted in new
chr11	9122771	9122894	ENSG00000175356.12|SCUBE2|pc|chr11:9122771:9122894:-	0	-
#Deleted in new
chr1	191228322	191228467	ENSG00000233882.2|LINC01680|lncRNA|chr1:191228322:191228467:-	0	-
#Deleted in new
chr1	19125602	19125699	ENSG00000127481.14|UBR4|pc|chr1:19125602:19125699:-	0	-
#Partially deleted in new
chr11	914522	914801	ENSG00000177830.17|CHID1|pc|chr11:914522:914801:-	0	-
#Deleted in new
chr11	914746	914820	ENSG00000177830.17|CHID1|pc|chr11:914746:914820:-	0	-
#Partially deleted in new
chr11	9170626	9172245	ENSG00000184014.7|DENND5A|pc|chr11:9170626:9172245:-	0	-
#Partially deleted in new
chr1	1917146	1917294	ENSG00000169885.9|CALML6|pc|chr1:1917146:1917294:+	0	+
#Partially deleted in new
chr1	1917146	1917296	ENSG00000169885.9|CALML6|pc|chr1:1917146:1917296:+	0	+
#Deleted in new
chr11	9175239	9175694	ENSG00000184014.7|DENND5A|pc|chr11:9175239:9175694:-	0	-
#Deleted in new
chr11	9176771	9176902	ENSG00000184014.7|DENND5A|pc|chr11:9176771:9176902:-	0	-
#Deleted in new
chr11	91794361	91794422	ENSG00000255332.7|AP003028.1|lncRNA|chr11:91794361:91794422:+	0	+
#Deleted in new
chr11	91795306	91795412	ENSG00000255332.7|AP003028.1|lncRNA|chr11:91795306:91795412:+	0	+
#Deleted in new
chr11	91795308	91795461	ENSG00000255332.7|AP003028.1|lncRNA|chr11:91795308:91795461:+	0	+
#Deleted in new
chr11	91796000	91796108	ENSG00000255332.7|AP003028.1|lncRNA|chr11:91796000:91796108:+	0	+
#Deleted in new
chr11	91800220	91800931	ENSG00000255332.7|AP003028.1|lncRNA|chr11:91800220:91800931:+	0	+
#Deleted in new
chr1	191858706	191859180	ENSG00000223344.1|AL359081.1|lncRNA|chr1:191858706:191859180:-	0	-
#Deleted in new
chr1	191858762	191859180	ENSG00000223344.1|AL359081.1|lncRNA|chr1:191858762:191859180:-	0	-
#Deleted in new
chr1	191866819	191866960	ENSG00000223344.1|AL359081.1|lncRNA|chr1:191866819:191866960:-	0	-
#Deleted in new
chr1	191875494	191875700	ENSG00000228215.2|AL954650.1|lncRNA|chr1:191875494:191875700:+	0	+
#Deleted in new
chr1	191975970	191976084	ENSG00000228215.2|AL954650.1|lncRNA|chr1:191975970:191976084:+	0	+
#Deleted in new
chr1	191977238	191977359	ENSG00000228215.2|AL954650.1|lncRNA|chr1:191977238:191977359:+	0	+
#Deleted in new
chr11	91992832	91993255	ENSG00000278859.1|AP002799.1|lncRNA|chr11:91992832:91993255:+	0	+
#Deleted in new
chr1	192009838	192011260	ENSG00000228215.2|AL954650.1|lncRNA|chr1:192009838:192011260:+	0	+
#Partially deleted in new
chr1	19215663	19219482	ENSG00000127463.14|EMC1|pc|chr1:19215663:19219482:-	0	-
#Deleted in new
chr1	19229354	19229395	ENSG00000127463.14|EMC1|pc|chr1:19229354:19229395:-	0	-
#Deleted in new
chr11	92403220	92403392	ENSG00000254705.1|AP000722.1|lncRNA|chr11:92403220:92403392:-	0	-
#Partially deleted in new
chr11	92406596	92406710	ENSG00000254705.1|AP000722.1|lncRNA|chr11:92406596:92406710:-	0	-
#Deleted in new
chr11	9245330	9245509	ENSG00000255097.1|AP006259.1|lncRNA|chr11:9245330:9245509:-	0	-
#Deleted in new
chr11	924893	924937	ENSG00000183020.13|AP2A2|pc|chr11:924893:924937:+	0	+
#Partially deleted in new
chr1	19251834	19252248	ENSG00000053372.4|MRTO4|pc|chr1:19251834:19252248:+	0	+
#Deleted in new
chr1	192537753	192538102	ENSG00000236069.1|AL136987.2|lncRNA|chr1:192537753:192538102:+	0	+
#Partially deleted in new
chr1	19258680	19260128	ENSG00000053372.4|MRTO4|pc|chr1:19258680:19260128:+	0	+
#Deleted in new
chr11	92914271	92914475	ENSG00000282916.1|AP003171.3|lncRNA|chr11:92914271:92914475:-	0	-
#Deleted in new
chr11	92965796	92965997	ENSG00000254874.1|AP003171.1|lncRNA|chr11:92965796:92965997:+	0	+
#Deleted in new
chr11	92966538	92966603	ENSG00000254874.1|AP003171.1|lncRNA|chr11:92966538:92966603:+	0	+
#Deleted in new
chr11	92972460	92972591	ENSG00000134640.2|MTNR1B|pc|chr11:92972460:92972591:+	0	+
#Deleted in new
chr1	193027874	193027955	ENSG00000116750.13|UCHL5|pc|chr1:193027874:193027955:-	0	-
#Deleted in new
chr1	193070553	193070619	ENSG00000116747.12|TROVE2|pc|chr1:193070553:193070619:+	0	+
#Deleted in new
chr11	93071528	93072031	ENSG00000278892.1|AP002371.2|lncRNA|chr11:93071528:93072031:+	0	+
#Deleted in new
chr1	193127847	193128138	ENSG00000134371.10|CDC73|pc|chr1:193127847:193128138:+	0	+
#Deleted in new
chr11	93133854	93134164	ENSG00000279304.1|AP003072.4|lncRNA|chr11:93133854:93134164:+	0	+
#Partially deleted in new
chr11	93154107	93155488	ENSG00000180773.14|SLC36A4|pc|chr11:93154107:93155488:-	0	-
#Deleted in new
chr11	93170153	93170221	ENSG00000180773.14|SLC36A4|pc|chr11:93170153:93170221:-	0	-
#Partially deleted in new
chr11	93171133	93171906	ENSG00000280379.1|AP003072.5|lncRNA|chr11:93171133:93171906:+	0	+
#Deleted in new
chr11	93197191	93197455	ENSG00000180773.14|SLC36A4|pc|chr11:93197191:93197455:-	0	-
#Deleted in new
chr11	93197777	93197929	ENSG00000180773.14|SLC36A4|pc|chr11:93197777:93197929:-	0	-
#Deleted in new
chr11	93197777	93197963	ENSG00000180773.14|SLC36A4|pc|chr11:93197777:93197963:-	0	-
#Deleted in new
chr11	93197777	93197964	ENSG00000180773.14|SLC36A4|pc|chr11:93197777:93197964:-	0	-
#Deleted in new
chr11	93206989	93207583	ENSG00000279269.1|AP003072.3|lncRNA|chr11:93206989:93207583:-	0	-
#Deleted in new
chr11	93240132	93240236	ENSG00000255233.1|AP003969.1|lncRNA|chr11:93240132:93240236:+	0	+
#Deleted in new
chr11	93240872	93241168	ENSG00000255233.1|AP003969.1|lncRNA|chr11:93240872:93241168:+	0	+
#Partially deleted in new
chr11	93286628	93288903	ENSG00000279684.1|AP003969.2|lncRNA|chr11:93286628:93288903:-	0	-
#Deleted in new
chr1	193304744	193304938	ENSG00000232077.1|LINC01031|lncRNA|chr1:193304744:193304938:+	0	+
#Deleted in new
chr11	93330601	93330778	ENSG00000165325.13|DEUP1|pc|chr11:93330601:93330778:+	0	+
#Deleted in new
chr11	93330644	93330772	ENSG00000165325.13|DEUP1|pc|chr11:93330644:93330772:+	0	+
#Deleted in new
chr11	93330716	93330772	ENSG00000165325.13|DEUP1|pc|chr11:93330716:93330772:+	0	+
#Partially deleted in new
chr1	193349132	193349275	ENSG00000232077.1|LINC01031|lncRNA|chr1:193349132:193349275:+	0	+
#Deleted in new
chr11	93352302	93352408	ENSG00000165325.13|DEUP1|pc|chr11:93352302:93352408:+	0	+
#Deleted in new
chr11	93352302	93352511	ENSG00000165325.13|DEUP1|pc|chr11:93352302:93352511:+	0	+
#Deleted in new
chr11	93383467	93383610	ENSG00000165325.13|DEUP1|pc|chr11:93383467:93383610:+	0	+
#Deleted in new
chr11	93587702	93588559	ENSG00000279454.1|AP003499.3|lncRNA|chr11:93587702:93588559:+	0	+
#Deleted in new
chr11	93592186	93592669	ENSG00000278953.1|AP003499.2|lncRNA|chr11:93592186:93592669:+	0	+
#Deleted in new
chr1	193678893	193679005	ENSG00000226640.2|AL357793.1|lncRNA|chr1:193678893:193679005:+	0	+
#Deleted in new
chr1	193725600	193725685	ENSG00000226640.2|AL357793.1|lncRNA|chr1:193725600:193725685:+	0	+
#Partially deleted in new
chr11	93730666	93731216	ENSG00000166012.16|TAF1D|pc|chr11:93730666:93731216:-	0	-
#Partially deleted in new
chr11	93730676	93731216	ENSG00000166012.16|TAF1D|pc|chr11:93730676:93731216:-	0	-
#Deleted in new
chr11	93731145	93731216	ENSG00000166012.16|TAF1D|pc|chr11:93731145:93731216:-	0	-
#Deleted in new
chr11	93731149	93731216	ENSG00000166012.16|TAF1D|pc|chr11:93731149:93731216:-	0	-
#Deleted in new
chr11	93731160	93731216	ENSG00000166012.16|TAF1D|pc|chr11:93731160:93731216:-	0	-
#Partially deleted in new
chr11	93733349	93734661	ENSG00000166012.16|TAF1D|pc|chr11:93733349:93734661:-	0	-
#Deleted in new
chr11	93734624	93734660	ENSG00000166012.16|TAF1D|pc|chr11:93734624:93734660:-	0	-
#Partially deleted in new
chr11	93734624	93735238	ENSG00000166012.16|TAF1D|pc|chr11:93734624:93735238:-	0	-
#Split in new
chr11	93734962	93736157	ENSG00000166012.16|TAF1D|pc|chr11:93734962:93736157:-	0	-
#Split in new
chr11	93734962	93736175	ENSG00000166012.16|TAF1D|pc|chr11:93734962:93736175:-	0	-
#Partially deleted in new
chr11	93735566	93736304	ENSG00000166012.16|TAF1D|pc|chr11:93735566:93736304:-	0	-
#Deleted in new
chr11	93738966	93739331	ENSG00000166012.16|TAF1D|pc|chr11:93738966:93739331:-	0	-
#Deleted in new
chr11	93739236	93739331	ENSG00000166012.16|TAF1D|pc|chr11:93739236:93739331:-	0	-
#Deleted in new
chr11	93739280	93739331	ENSG00000166012.16|TAF1D|pc|chr11:93739280:93739331:-	0	-
#Deleted in new
chr11	93741321	93741476	ENSG00000166012.16|TAF1D|pc|chr11:93741321:93741476:-	0	-
#Deleted in new
chr11	93741321	93741479	ENSG00000166012.16|TAF1D|pc|chr11:93741321:93741479:-	0	-
#Deleted in new
chr11	93741321	93741480	ENSG00000166012.16|TAF1D|pc|chr11:93741321:93741480:-	0	-
#Deleted in new
chr11	93741321	93741493	ENSG00000166012.16|TAF1D|pc|chr11:93741321:93741493:-	0	-
#Deleted in new
chr11	93741321	93741494	ENSG00000166012.16|TAF1D|pc|chr11:93741321:93741494:-	0	-
#Deleted in new
chr11	93741321	93741495	ENSG00000166012.16|TAF1D|pc|chr11:93741321:93741495:-	0	-
#Deleted in new
chr11	93741321	93741945	ENSG00000166012.16|TAF1D|pc|chr11:93741321:93741945:-	0	-
#Deleted in new
chr11	93741590	93741728	ENSG00000182919.14|C11orf54|pc|chr11:93741590:93741728:+	0	+
#Deleted in new
chr11	93741593	93741728	ENSG00000182919.14|C11orf54|pc|chr11:93741593:93741728:+	0	+
#Deleted in new
chr11	93741595	93741728	ENSG00000182919.14|C11orf54|pc|chr11:93741595:93741728:+	0	+
#Deleted in new
chr11	93741641	93741728	ENSG00000182919.14|C11orf54|pc|chr11:93741641:93741728:+	0	+
#Deleted in new
chr11	93741656	93741728	ENSG00000182919.14|C11orf54|pc|chr11:93741656:93741728:+	0	+
#Deleted in new
chr11	93741658	93741728	ENSG00000182919.14|C11orf54|pc|chr11:93741658:93741728:+	0	+
#Deleted in new
chr11	93741663	93741728	ENSG00000284057.1|AP001273.2|pc|chr11:93741663:93741728:+	0	+
#Deleted in new
chr11	93741668	93741728	ENSG00000182919.14|C11orf54|pc|chr11:93741668:93741728:+	0	+
#Deleted in new
chr11	93741669	93741728	ENSG00000182919.14|C11orf54|pc|chr11:93741669:93741728:+	0	+
#Deleted in new
chr11	93741682	93741728	ENSG00000182919.14|C11orf54|pc|chr11:93741682:93741728:+	0	+
#Deleted in new
chr11	93741685	93741728	ENSG00000182919.14|C11orf54|pc|chr11:93741685:93741728:+	0	+
#Deleted in new
chr11	93741687	93741728	ENSG00000182919.14|C11orf54|pc|chr11:93741687:93741728:+	0	+
#Partially deleted in new
chr1	19374174	19374455	ENSG00000077549.17|CAPZB|pc|chr1:19374174:19374455:-	0	-
#Deleted in new
chr11	93741962	93742066	ENSG00000182919.14|C11orf54|pc|chr11:93741962:93742066:+	0	+
#Deleted in new
chr11	93741962	93742094	ENSG00000182919.14|C11orf54|pc|chr11:93741962:93742094:+	0	+
#Deleted in new
chr11	93741962	93742141	ENSG00000182919.14|C11orf54|pc|chr11:93741962:93742141:+	0	+
#Deleted in new
chr11	93742702	93742898	ENSG00000166012.16|TAF1D|pc|chr11:93742702:93742898:-	0	-
#Deleted in new
chr11	93742718	93742753	ENSG00000182919.14|C11orf54|pc|chr11:93742718:93742753:+	0	+
#Partially deleted in new
chr11	93761514	93764749	ENSG00000182919.14|C11orf54|pc|chr11:93761514:93764749:+	0	+
#Deleted in new
chr11	93784303	93784391	ENSG00000166012.16|TAF1D|pc|chr11:93784303:93784391:-	0	-
#Partially deleted in new
chr11	93784748	93784933	ENSG00000042429.11|MED17|pc|chr11:93784748:93784933:+	0	+
#Partially deleted in new
chr11	93788000	93789796	ENSG00000042429.11|MED17|pc|chr11:93788000:93789796:+	0	+
#Deleted in new
chr11	93790259	93790343	ENSG00000042429.11|MED17|pc|chr11:93790259:93790343:+	0	+
#Deleted in new
chr11	93794249	93794439	ENSG00000042429.11|MED17|pc|chr11:93794249:93794439:+	0	+
#Partially deleted in new
chr11	93806100	93807635	ENSG00000042429.11|MED17|pc|chr11:93806100:93807635:+	0	+
#Partially deleted in new
chr11	93809716	93812378	ENSG00000042429.11|MED17|pc|chr11:93809716:93812378:+	0	+
#Partially deleted in new
chr11	93811852	93814963	ENSG00000042429.11|MED17|pc|chr11:93811852:93814963:+	0	+
#Deleted in new
chr11	93818806	93818852	ENSG00000214376.5|VSTM5|pc|chr11:93818806:93818852:-	0	-
#Deleted in new
chr11	9392197	9392308	ENSG00000205339.9|IPO7|pc|chr11:9392197:9392308:+	0	+
#Deleted in new
chr11	9392197	9392320	ENSG00000205339.9|IPO7|pc|chr11:9392197:9392320:+	0	+
#Deleted in new
chr11	9402733	9402750	ENSG00000205339.9|IPO7|pc|chr11:9402733:9402750:+	0	+
#Deleted in new
chr11	940734	940894	ENSG00000183020.13|AP2A2|pc|chr11:940734:940894:+	0	+
#Partially deleted in new
chr1	194149472	194149856	ENSG00000227240.1|AL356272.1|lncRNA|chr1:194149472:194149856:+	0	+
#Deleted in new
chr1	194197522	194197586	ENSG00000227240.1|AL356272.1|lncRNA|chr1:194197522:194197586:+	0	+
#Deleted in new
chr1	194198310	194198694	ENSG00000227240.1|AL356272.1|lncRNA|chr1:194198310:194198694:+	0	+
#Deleted in new
chr11	942278	942394	ENSG00000183020.13|AP2A2|pc|chr11:942278:942394:+	0	+
#Deleted in new
chr11	94238149	94238277	ENSG00000250519.6|AP002784.1|lncRNA|chr11:94238149:94238277:+	0	+
#Deleted in new
chr11	943099	943314	ENSG00000183020.13|AP2A2|pc|chr11:943099:943314:+	0	+
#Deleted in new
chr11	9433138	9433486	ENSG00000254397.1|AC132192.1|lncRNA|chr11:9433138:9433486:-	0	-
#Deleted in new
chr1	194350942	194351238	ENSG00000231714.1|AL513348.1|lncRNA|chr1:194350942:194351238:+	0	+
#Deleted in new
chr1	194352282	194352426	ENSG00000231714.1|AL513348.1|lncRNA|chr1:194352282:194352426:+	0	+
#Partially deleted in new
chr11	94472907	94473461	ENSG00000255893.1|AP000786.1|lncRNA|chr11:94472907:94473461:-	0	-
#Deleted in new
chr11	94483769	94483839	ENSG00000020922.12|MRE11|pc|chr11:94483769:94483839:-	0	-
#Deleted in new
chr11	94559017	94559374	ENSG00000280167.1|AP000943.4|lncRNA|chr11:94559017:94559374:+	0	+
#Deleted in new
chr11	9463770	9463870	ENSG00000166478.9|ZNF143|pc|chr11:9463770:9463870:+	0	+
#Deleted in new
chr11	94638037	94638069	ENSG00000233536.2|AP000943.1|lncRNA|chr11:94638037:94638069:+	0	+
#Deleted in new
chr11	94640213	94640322	ENSG00000233536.2|AP000943.1|lncRNA|chr11:94640213:94640322:+	0	+
#Deleted in new
chr11	94640582	94640833	ENSG00000233536.2|AP000943.1|lncRNA|chr11:94640582:94640833:+	0	+
#Deleted in new
chr11	94641906	94641944	ENSG00000255666.5|AP000943.2|lncRNA|chr11:94641906:94641944:+	0	+
#Deleted in new
chr11	94641929	94641944	ENSG00000255666.5|AP000943.2|lncRNA|chr11:94641929:94641944:+	0	+
#Deleted in new
chr11	946460	946963	ENSG00000183020.13|AP2A2|pc|chr11:946460:946963:+	0	+
#Deleted in new
chr11	94650473	94650537	ENSG00000255666.5|AP000943.2|lncRNA|chr11:94650473:94650537:+	0	+
#Deleted in new
chr11	94651476	94651628	ENSG00000255666.5|AP000943.2|lncRNA|chr11:94651476:94651628:+	0	+
#Deleted in new
chr11	94651476	94651629	ENSG00000255666.5|AP000943.2|lncRNA|chr11:94651476:94651629:+	0	+
#Deleted in new
chr11	94651476	94651631	ENSG00000255666.5|AP000943.2|lncRNA|chr11:94651476:94651631:+	0	+
#Deleted in new
chr11	94695820	94695907	ENSG00000255929.5|AP000943.3|lncRNA|chr11:94695820:94695907:-	0	-
#Deleted in new
chr11	94925424	94925521	ENSG00000256469.1|AP002383.3|lncRNA|chr11:94925424:94925521:-	0	-
#Deleted in new
chr11	95200910	95201103	ENSG00000149212.11|SESN3|pc|chr11:95200910:95201103:-	0	-
#Deleted in new
chr11	95201236	95201355	ENSG00000149212.11|SESN3|pc|chr11:95201236:95201355:-	0	-
#Deleted in new
chr11	95204805	95204880	ENSG00000245552.6|AP000787.1|lncRNA|chr11:95204805:95204880:+	0	+
#Split in new
chr1	1953312	1955850	ENSG00000142609.17|CFAP74|pc|chr1:1953312:1955850:-	0	-
#Deleted in new
chr11	95482405	95482660	ENSG00000250390.2|AP001790.1|lncRNA|chr11:95482405:95482660:+	0	+
#Deleted in new
chr11	95497493	95497553	ENSG00000250390.2|AP001790.1|lncRNA|chr11:95497493:95497553:+	0	+
#Deleted in new
chr1	1955147	1955523	ENSG00000142609.17|CFAP74|pc|chr1:1955147:1955523:-	0	-
#Deleted in new
chr11	956785	956982	ENSG00000183020.13|AP2A2|pc|chr11:956785:956982:+	0	+
#Partially deleted in new
chr11	9577141	9581487	ENSG00000166483.10|WEE1|pc|chr11:9577141:9581487:+	0	+
#Deleted in new
chr11	9577784	9577895	ENSG00000166483.10|WEE1|pc|chr11:9577784:9577895:+	0	+
#Deleted in new
chr11	95794220	95794359	ENSG00000166037.10|CEP57|pc|chr11:95794220:95794359:+	0	+
#Deleted in new
chr11	95795515	95795559	ENSG00000166037.10|CEP57|pc|chr11:95795515:95795559:+	0	+
#Deleted in new
chr11	95795541	95795559	ENSG00000166037.10|CEP57|pc|chr11:95795541:95795559:+	0	+
#Deleted in new
chr11	95815117	95815260	ENSG00000166037.10|CEP57|pc|chr11:95815117:95815260:+	0	+
#Partially deleted in new
chr11	95825682	95828027	ENSG00000166037.10|CEP57|pc|chr11:95825682:95828027:+	0	+
#Deleted in new
chr11	95866402	95866486	ENSG00000087053.18|MTMR2|pc|chr11:95866402:95866486:-	0	-
#Deleted in new
chr11	95866425	95866486	ENSG00000087053.18|MTMR2|pc|chr11:95866425:95866486:-	0	-
#Deleted in new
chr11	95882373	95882496	ENSG00000087053.18|MTMR2|pc|chr11:95882373:95882496:-	0	-
#Deleted in new
chr11	95887609	95887684	ENSG00000087053.18|MTMR2|pc|chr11:95887609:95887684:-	0	-
#Deleted in new
chr11	95887611	95887684	ENSG00000087053.18|MTMR2|pc|chr11:95887611:95887684:-	0	-
#Deleted in new
chr11	95887611	95887759	ENSG00000087053.18|MTMR2|pc|chr11:95887611:95887759:-	0	-
#Deleted in new
chr11	95923691	95923763	ENSG00000087053.18|MTMR2|pc|chr11:95923691:95923763:-	0	-
#Deleted in new
chr11	95923691	95923796	ENSG00000087053.18|MTMR2|pc|chr11:95923691:95923796:-	0	-
#Deleted in new
chr11	95923691	95923818	ENSG00000087053.18|MTMR2|pc|chr11:95923691:95923818:-	0	-
#Deleted in new
chr11	95923691	95923865	ENSG00000087053.18|MTMR2|pc|chr11:95923691:95923865:-	0	-
#Deleted in new
chr11	95923691	95923868	ENSG00000087053.18|MTMR2|pc|chr11:95923691:95923868:-	0	-
#Partially deleted in new
chr1	19596709	19596832	ENSG00000235185.1|AL031727.2|lncRNA|chr1:19596709:19596832:-	0	-
#Deleted in new
chr1	19600786	19600971	ENSG00000173436.13|MINOS1|pc|chr1:19600786:19600971:+	0	+
#Deleted in new
chr1	19600786	19600971	ENSG00000270136.5|MINOS1-NBL1|pc|chr1:19600786:19600971:+	0	+
#Deleted in new
chr1	19600786	19601304	ENSG00000173436.13|MINOS1|pc|chr1:19600786:19601304:+	0	+
#Deleted in new
chr1	196044995	196045539	ENSG00000227421.1|LINC01724|lncRNA|chr1:196044995:196045539:-	0	-
#Deleted in new
chr1	19614500	19614594	ENSG00000173436.13|MINOS1|pc|chr1:19614500:19614594:+	0	+
#Partially deleted in new
chr1	19625391	19625632	ENSG00000173436.13|MINOS1|pc|chr1:19625391:19625632:+	0	+
#Deleted in new
chr1	196259586	196259624	ENSG00000162687.16|KCNT2|pc|chr1:196259586:196259624:-	0	-
#Deleted in new
chr1	19634436	19634524	ENSG00000270136.5|MINOS1-NBL1|pc|chr1:19634436:19634524:+	0	+
#Deleted in new
chr11	96404278	96404391	ENSG00000183340.6|JRKL|pc|chr11:96404278:96404391:+	0	+
#Deleted in new
chr11	96449931	96450033	ENSG00000255679.1|JRKL-AS1|lncRNA|chr11:96449931:96450033:-	0	-
#Deleted in new
chr1	19647609	19647670	ENSG00000158747.13|NBL1|pc|chr1:19647609:19647670:+	0	+
#Deleted in new
chr11	96506728	96506826	ENSG00000255679.1|JRKL-AS1|lncRNA|chr11:96506728:96506826:-	0	-
#Deleted in new
chr11	96507036	96507574	ENSG00000183340.6|JRKL|pc|chr11:96507036:96507574:+	0	+
#Deleted in new
chr11	96508424	96508481	ENSG00000256684.1|AP003781.1|lncRNA|chr11:96508424:96508481:+	0	+
#Deleted in new
chr11	96510927	96511010	ENSG00000256684.1|AP003781.1|lncRNA|chr11:96510927:96511010:+	0	+
#Deleted in new
chr11	96590316	96590474	ENSG00000254587.1|AP003066.1|lncRNA|chr11:96590316:96590474:+	0	+
#Deleted in new
chr1	196701317	196701565	ENSG00000000971.15|CFH|pc|chr1:196701317:196701565:+	0	+
#Deleted in new
chr1	196701317	196701566	ENSG00000000971.15|CFH|pc|chr1:196701317:196701566:+	0	+
#Deleted in new
chr1	196788744	196788944	ENSG00000116785.13|CFHR3|pc|chr1:196788744:196788944:+	0	+
#Split in new
chr1	196788744	196790022	ENSG00000116785.13|CFHR3|pc|chr1:196788744:196790022:+	0	+
#Partially deleted in new
chr1	196793316	196794073	ENSG00000116785.13|CFHR3|pc|chr1:196793316:196794073:+	0	+
#Deleted in new
chr1	196794577	196795406	ENSG00000116785.13|CFHR3|pc|chr1:196794577:196795406:+	0	+
#Deleted in new
chr1	196820884	196821202	ENSG00000244414.6|CFHR1|pc|chr1:196820884:196821202:+	0	+
#Partially deleted in new
chr1	196918209	196918972	ENSG00000134365.12|CFHR4|pc|chr1:196918209:196918972:+	0	+
#Partially deleted in new
chr1	197008486	197009674	ENSG00000134389.9|CFHR5|pc|chr1:197008486:197009674:+	0	+
#Deleted in new
chr11	97259445	97259662	ENSG00000255039.1|LINC02553|lncRNA|chr11:97259445:97259662:-	0	-
#Deleted in new
chr11	97259847	97259987	ENSG00000255039.1|LINC02553|lncRNA|chr11:97259847:97259987:-	0	-
#Deleted in new
chr11	9726894	9726955	ENSG00000133789.14|SWAP70|pc|chr11:9726894:9726955:+	0	+
#Deleted in new
chr1	197360348	197360479	ENSG00000134376.15|CRB1|pc|chr1:197360348:197360479:+	0	+
#Deleted in new
chr1	19738221	19738419	ENSG00000162542.13|TMCO4|pc|chr1:19738221:19738419:-	0	-
#Deleted in new
chr1	197447428	197447469	ENSG00000230260.1|AL136322.1|lncRNA|chr1:197447428:197447469:-	0	-
#Deleted in new
chr11	9750283	9750491	ENSG00000133789.14|SWAP70|pc|chr11:9750283:9750491:+	0	+
#Partially deleted in new
chr1	197545566	197545990	ENSG00000213047.12|DENND1B|pc|chr1:197545566:197545990:-	0	-
#Deleted in new
chr11	9757766	9757843	ENSG00000245522.2|AC026250.1|lncRNA|chr11:9757766:9757843:-	0	-
#Deleted in new
chr11	9757766	9758164	ENSG00000245522.2|AC026250.1|lncRNA|chr11:9757766:9758164:-	0	-
#Duplicated in new
chr1	197735249	197735796	ENSG00000213047.12|DENND1B|pc|chr1:197735249:197735796:-	0	-
#Partially deleted in new
chr1	197775539	197775633	ENSG00000213047.12|DENND1B|pc|chr1:197775539:197775633:-	0	-
#Deleted in new
chr11	97878780	97878901	ENSG00000255502.5|AP003730.2|lncRNA|chr11:97878780:97878901:-	0	-
#Partially deleted in new
chr11	97918422	97918976	ENSG00000255502.5|AP003730.2|lncRNA|chr11:97918422:97918976:-	0	-
#Deleted in new
chr11	97937027	97937090	ENSG00000255502.5|AP003730.2|lncRNA|chr11:97937027:97937090:-	0	-
#Deleted in new
chr11	97942605	97942762	ENSG00000255502.5|AP003730.2|lncRNA|chr11:97942605:97942762:-	0	-
#Deleted in new
chr1	198208537	198208588	ENSG00000151414.14|NEK7|pc|chr1:198208537:198208588:+	0	+
#Partially deleted in new
chr1	198245188	198245349	ENSG00000151414.14|NEK7|pc|chr1:198245188:198245349:+	0	+
#Deleted in new
chr1	1983670	1985112	ENSG00000142609.17|CFAP74|pc|chr1:1983670:1985112:-	0	-
#Deleted in new
chr1	198657552	198657821	ENSG00000261573.1|AL157402.2|lncRNA|chr1:198657552:198657821:-	0	-
#Deleted in new
chr11	98676390	98676509	ENSG00000254599.1|AP003715.1|lncRNA|chr11:98676390:98676509:+	0	+
#Deleted in new
chr11	98680071	98680202	ENSG00000254599.1|AP003715.1|lncRNA|chr11:98680071:98680202:+	0	+
#Deleted in new
chr11	98683550	98683735	ENSG00000254599.1|AP003715.1|lncRNA|chr11:98683550:98683735:+	0	+
#Deleted in new
chr1	198694017	198695171	ENSG00000081237.18|PTPRC|pc|chr1:198694017:198695171:+	0	+
#Deleted in new
chr1	1987961	1988133	ENSG00000142609.17|CFAP74|pc|chr1:1987961:1988133:-	0	-
#Partially deleted in new
chr1	198807492	198808243	ENSG00000229989.3|MIR181A1HG|lncRNA|chr1:198807492:198808243:-	0	-
#Partially deleted in new
chr1	198807657	198808243	ENSG00000229989.3|MIR181A1HG|lncRNA|chr1:198807657:198808243:-	0	-
#Deleted in new
chr1	198827025	198827216	ENSG00000229989.3|MIR181A1HG|lncRNA|chr1:198827025:198827216:-	0	-
#Deleted in new
chr11	98938911	98939253	ENSG00000254830.1|AP002428.1|lncRNA|chr11:98938911:98939253:-	0	-
#Deleted in new
chr11	98945041	98945079	ENSG00000254830.1|AP002428.1|lncRNA|chr11:98945041:98945079:-	0	-
#Deleted in new
chr1	199016132	199016465	ENSG00000235492.1|LINC01221|lncRNA|chr1:199016132:199016465:+	0	+
#Deleted in new
chr1	199076523	199076735	ENSG00000235492.1|LINC01221|lncRNA|chr1:199076523:199076735:+	0	+
#Partially deleted in new
chr1	199148597	199148737	ENSG00000231718.1|AC099673.1|lncRNA|chr1:199148597:199148737:+	0	+
#Deleted in new
chr11	9915605	9915683	ENSG00000255476.1|AC011092.2|lncRNA|chr11:9915605:9915683:+	0	+
#Deleted in new
chr1	199162464	199162570	ENSG00000231718.1|AC099673.1|lncRNA|chr1:199162464:199162570:+	0	+
#Deleted in new
chr11	9928889	9929263	ENSG00000255476.1|AC011092.2|lncRNA|chr11:9928889:9929263:+	0	+
#Deleted in new
chr1	199391320	199393307	ENSG00000231718.1|AC099673.1|lncRNA|chr1:199391320:199393307:+	0	+
#Deleted in new
chr11	996063	996225	ENSG00000183020.13|AP2A2|pc|chr11:996063:996225:+	0	+
#Deleted in new
chr1	200029032	200029728	ENSG00000116833.13|NR5A2|pc|chr1:200029032:200029728:+	0	+
#Deleted in new
chr1	200057503	200058424	ENSG00000116833.13|NR5A2|pc|chr1:200057503:200058424:+	0	+
#Deleted in new
chr1	200253418	200254071	ENSG00000203721.6|LINC00862|lncRNA|chr1:200253418:200254071:-	0	-
#Deleted in new
chr1	20028178	20028709	ENSG00000127472.10|PLA2G5|pc|chr1:20028178:20028709:+	0	+
#Deleted in new
chr1	20028429	20028709	ENSG00000127472.10|PLA2G5|pc|chr1:20028429:20028709:+	0	+
#Deleted in new
chr1	20028433	20028709	ENSG00000127472.10|PLA2G5|pc|chr1:20028433:20028709:+	0	+
#Deleted in new
chr1	20028525	20028709	ENSG00000127472.10|PLA2G5|pc|chr1:20028525:20028709:+	0	+
#Deleted in new
chr1	20028570	20028709	ENSG00000127472.10|PLA2G5|pc|chr1:20028570:20028709:+	0	+
#Deleted in new
chr1	200333192	200333286	ENSG00000230623.4|AC104461.1|lncRNA|chr1:200333192:200333286:+	0	+
#Deleted in new
chr1	200342543	200342757	ENSG00000203721.6|LINC00862|lncRNA|chr1:200342543:200342757:-	0	-
#Deleted in new
chr1	200342543	200343410	ENSG00000203721.6|LINC00862|lncRNA|chr1:200342543:200343410:-	0	-
#Deleted in new
chr1	200343282	200343410	ENSG00000203721.6|LINC00862|lncRNA|chr1:200343282:200343410:-	0	-
#Deleted in new
chr1	200354643	200354756	ENSG00000230623.4|AC104461.1|lncRNA|chr1:200354643:200354756:+	0	+
#Deleted in new
chr1	200360491	200360611	ENSG00000230623.4|AC104461.1|lncRNA|chr1:200360491:200360611:+	0	+
#Deleted in new
chr1	2003700	2003714	ENSG00000142609.17|CFAP74|pc|chr1:2003700:2003714:-	0	-
#Deleted in new
chr1	2003700	2003837	ENSG00000142609.17|CFAP74|pc|chr1:2003700:2003837:-	0	-
#Deleted in new
chr1	200371045	200371165	ENSG00000203721.6|LINC00862|lncRNA|chr1:200371045:200371165:-	0	-
#Deleted in new
chr1	200411799	200411962	ENSG00000230623.4|AC104461.1|lncRNA|chr1:200411799:200411962:+	0	+
#Deleted in new
chr1	200411829	200411962	ENSG00000230623.4|AC104461.1|lncRNA|chr1:200411829:200411962:+	0	+
#Deleted in new
chr1	20046101	20046141	ENSG00000127472.10|PLA2G5|pc|chr1:20046101:20046141:+	0	+
#Deleted in new
chr1	200477967	200478022	ENSG00000230623.4|AC104461.1|lncRNA|chr1:200477967:200478022:+	0	+
#Deleted in new
chr1	200477967	200478293	ENSG00000230623.4|AC104461.1|lncRNA|chr1:200477967:200478293:+	0	+
#Deleted in new
chr1	200478019	200478154	ENSG00000282849.1|AL359834.1|lncRNA|chr1:200478019:200478154:-	0	-
#Deleted in new
chr1	20054791	20054839	ENSG00000127472.10|PLA2G5|pc|chr1:20054791:20054839:+	0	+
#Deleted in new
chr1	20059631	20059692	ENSG00000127472.10|PLA2G5|pc|chr1:20059631:20059692:+	0	+
#Deleted in new
chr1	20063483	20063602	ENSG00000127472.10|PLA2G5|pc|chr1:20063483:20063602:+	0	+
#Deleted in new
chr1	200654440	200654550	ENSG00000118197.13|DDX59|pc|chr1:200654440:200654550:-	0	-
#Partially deleted in new
chr1	200654440	200654582	ENSG00000118197.13|DDX59|pc|chr1:200654440:200654582:-	0	-
#Deleted in new
chr1	20066023	20066129	ENSG00000127472.10|PLA2G5|pc|chr1:20066023:20066129:+	0	+
#Deleted in new
chr1	20068872	20069032	ENSG00000127472.10|PLA2G5|pc|chr1:20068872:20069032:+	0	+
#Deleted in new
chr1	20068872	20069034	ENSG00000127472.10|PLA2G5|pc|chr1:20068872:20069034:+	0	+
#Deleted in new
chr1	200690308	200690430	ENSG00000260088.1|AL445483.1|lncRNA|chr1:200690308:200690430:+	0	+
#Deleted in new
chr1	200693752	200694250	ENSG00000260088.1|AL445483.1|lncRNA|chr1:200693752:200694250:+	0	+
#Deleted in new
chr1	20088824	20088901	ENSG00000127472.10|PLA2G5|pc|chr1:20088824:20088901:+	0	+
#Deleted in new
chr1	20088824	20088943	ENSG00000127472.10|PLA2G5|pc|chr1:20088824:20088943:+	0	+
#Partially deleted in new
chr1	200906191	200906495	ENSG00000163362.10|INAVA|pc|chr1:200906191:200906495:+	0	+
#Deleted in new
chr1	200914473	200914595	ENSG00000163362.10|INAVA|pc|chr1:200914473:200914595:+	0	+
#Deleted in new
chr1	201036287	201036469	ENSG00000234132.2|AL358473.2|lncRNA|chr1:201036287:201036469:+	0	+
#Deleted in new
chr1	201036287	201036675	ENSG00000234132.2|AL358473.2|lncRNA|chr1:201036287:201036675:+	0	+
#Partially deleted in new
chr1	20111938	20114259	ENSG00000117215.14|PLA2G2D|pc|chr1:20111938:20114259:-	0	-
#Partially deleted in new
chr1	20112656	20114259	ENSG00000117215.14|PLA2G2D|pc|chr1:20112656:20114259:-	0	-
#Partially deleted in new
chr1	2013212	2015000	ENSG00000233542.1|AL391845.2|lncRNA|chr1:2013212:2015000:-	0	-
#Partially deleted in new
chr1	201360452	201361369	ENSG00000118194.18|TNNT2|pc|chr1:201360452:201361369:-	0	-
#Partially deleted in new
chr1	201361011	201361166	ENSG00000118194.18|TNNT2|pc|chr1:201361011:201361166:-	0	-
#Partially deleted in new
chr1	201363926	201364375	ENSG00000118194.18|TNNT2|pc|chr1:201363926:201364375:-	0	-
#Deleted in new
chr1	201391077	201391195	ENSG00000159166.13|LAD1|pc|chr1:201391077:201391195:-	0	-
#Deleted in new
chr1	201400792	201401190	ENSG00000282221.1|AC119427.1|lncRNA|chr1:201400792:201401190:+	0	+
#Deleted in new
chr1	201429698	201429866	ENSG00000159173.18|TNNI1|pc|chr1:201429698:201429866:-	0	-
#Deleted in new
chr1	201465060	201465146	ENSG00000224818.1|AC096677.2|lncRNA|chr1:201465060:201465146:-	0	-
#Deleted in new
chr1	201467485	201467583	ENSG00000174307.6|PHLDA3|pc|chr1:201467485:201467583:-	0	-
#Deleted in new
chr1	20154337	20154463	ENSG00000227066.1|Z98257.1|lncRNA|chr1:20154337:20154463:+	0	+
#Deleted in new
chr1	20157691	20159247	ENSG00000227066.1|Z98257.1|lncRNA|chr1:20157691:20159247:+	0	+
#Deleted in new
chr1	20159611	20160568	ENSG00000227066.1|Z98257.1|lncRNA|chr1:20159611:20160568:+	0	+
#Deleted in new
chr1	20159629	20160566	ENSG00000227066.1|Z98257.1|lncRNA|chr1:20159629:20160566:+	0	+
#Deleted in new
chr1	20163091	20163296	ENSG00000187980.6|PLA2G2C|pc|chr1:20163091:20163296:-	0	-
#Partially deleted in new
chr1	201794171	201794246	ENSG00000134369.15|NAV1|pc|chr1:201794171:201794246:+	0	+
#Partially deleted in new
chr1	201794465	201798608	ENSG00000134369.15|NAV1|pc|chr1:201794465:201798608:+	0	+
#Deleted in new
chr1	201816853	201816967	ENSG00000231871.5|IPO9-AS1|lncRNA|chr1:201816853:201816967:-	0	-
#Partially deleted in new
chr1	201962215	201963744	ENSG00000134375.10|TIMM17A|pc|chr1:201962215:201963744:+	0	+
#Deleted in new
chr1	201962803	201962924	ENSG00000134375.10|TIMM17A|pc|chr1:201962803:201962924:+	0	+
#Deleted in new
chr1	202298616	202298684	ENSG00000133067.17|LGR6|pc|chr1:202298616:202298684:+	0	+
#Deleted in new
chr1	2023560	2024223	ENSG00000187730.8|GABRD|pc|chr1:2023560:2024223:+	0	+
#Deleted in new
chr1	2023796	2023890	ENSG00000187730.8|GABRD|pc|chr1:2023796:2023890:+	0	+
#Deleted in new
chr1	20244295	20244655	ENSG00000228105.1|LINC01757|lncRNA|chr1:20244295:20244655:+	0	+
#Deleted in new
chr1	202462742	202463097	ENSG00000077157.21|PPP1R12B|pc|chr1:202462742:202463097:+	0	+
#Partially deleted in new
chr1	2026527	2027659	ENSG00000187730.8|GABRD|pc|chr1:2026527:2027659:+	0	+
#Deleted in new
chr1	202766396	202766504	ENSG00000117139.16|KDM5B|pc|chr1:202766396:202766504:-	0	-
#Deleted in new
chr1	202776104	202776220	ENSG00000117139.16|KDM5B|pc|chr1:202776104:202776220:-	0	-
#Deleted in new
chr1	202928480	202928636	ENSG00000117153.15|KLHL12|pc|chr1:202928480:202928636:-	0	-
#Deleted in new
chr1	202954240	202954307	ENSG00000159346.12|ADIPOR1|pc|chr1:202954240:202954307:-	0	-
#Deleted in new
chr1	203145036	203145074	ENSG00000224671.2|AC105940.1|lncRNA|chr1:203145036:203145074:-	0	-
#Partially deleted in new
chr1	203217934	203218091	ENSG00000133063.15|CHIT1|pc|chr1:203217934:203218091:-	0	-
#Deleted in new
chr1	203240329	203240428	ENSG00000133063.15|CHIT1|pc|chr1:203240329:203240428:-	0	-
#Deleted in new
chr1	203240462	203240520	ENSG00000133063.15|CHIT1|pc|chr1:203240462:203240520:-	0	-
#Deleted in new
chr1	203240626	203240658	ENSG00000133063.15|CHIT1|pc|chr1:203240626:203240658:-	0	-
#Deleted in new
chr1	203260801	203260862	ENSG00000133063.15|CHIT1|pc|chr1:203260801:203260862:-	0	-
#Partially deleted in new
chr1	203268517	203272809	ENSG00000133063.15|CHIT1|pc|chr1:203268517:203272809:-	0	-
#Deleted in new
chr1	203273375	203273641	ENSG00000133063.15|CHIT1|pc|chr1:203273375:203273641:-	0	-
#Partially deleted in new
chr1	203304519	203304548	ENSG00000233791.5|LINC01136|lncRNA|chr1:203304519:203304548:-	0	-
#Partially deleted in new
chr1	20337974	20339222	ENSG00000158816.15|VWA5B1|pc|chr1:20337974:20339222:+	0	+
#Deleted in new
chr1	20377380	20377509	ENSG00000236963.6|LINC01141|lncRNA|chr1:20377380:20377509:-	0	-
#Deleted in new
chr1	20378310	20378432	ENSG00000236963.6|LINC01141|lncRNA|chr1:20378310:20378432:-	0	-
#Deleted in new
chr1	20378972	20379026	ENSG00000236963.6|LINC01141|lncRNA|chr1:20378972:20379026:-	0	-
#Deleted in new
chr1	203814904	203814972	ENSG00000058673.16|ZC3H11A|pc|chr1:203814904:203814972:+	0	+
#Deleted in new
chr1	20398087	20398225	ENSG00000236963.6|LINC01141|lncRNA|chr1:20398087:20398225:-	0	-
#Deleted in new
chr1	20398089	20398225	ENSG00000236963.6|LINC01141|lncRNA|chr1:20398089:20398225:-	0	-
#Deleted in new
chr1	20398104	20398225	ENSG00000236963.6|LINC01141|lncRNA|chr1:20398104:20398225:-	0	-
#Deleted in new
chr1	20398482	20398729	ENSG00000236963.6|LINC01141|lncRNA|chr1:20398482:20398729:-	0	-
#Deleted in new
chr1	20398482	20398787	ENSG00000236963.6|LINC01141|lncRNA|chr1:20398482:20398787:-	0	-
#Deleted in new
chr1	20398715	20398738	ENSG00000236963.6|LINC01141|lncRNA|chr1:20398715:20398738:-	0	-
#Deleted in new
chr1	204036968	204037084	ENSG00000176754.12|LINC00303|lncRNA|chr1:204036968:204037084:-	0	-
#Deleted in new
chr1	204040264	204040394	ENSG00000176754.12|LINC00303|lncRNA|chr1:204040264:204040394:-	0	-
#Partially deleted in new
chr1	204078128	204078185	ENSG00000143842.14|SOX13|pc|chr1:204078128:204078185:+	0	+
#Deleted in new
chr1	20408705	20408810	ENSG00000236963.6|LINC01141|lncRNA|chr1:20408705:20408810:-	0	-
#Deleted in new
chr1	204116064	204116349	ENSG00000143842.14|SOX13|pc|chr1:204116064:204116349:+	0	+
#Partially deleted in new
chr1	204117592	204119859	ENSG00000143842.14|SOX13|pc|chr1:204117592:204119859:+	0	+
#Deleted in new
chr1	20412303	20412482	ENSG00000226487.1|AL139254.1|lncRNA|chr1:20412303:20412482:-	0	-
#Deleted in new
chr1	20412567	20412654	ENSG00000226487.1|AL139254.1|lncRNA|chr1:20412567:20412654:-	0	-
#Deleted in new
chr1	204173837	204173920	ENSG00000143839.14|REN|pc|chr1:204173837:204173920:-	0	-
#Deleted in new
chr1	20428583	20428739	ENSG00000236963.6|LINC01141|lncRNA|chr1:20428583:20428739:-	0	-
#Deleted in new
chr1	20428583	20428782	ENSG00000236963.6|LINC01141|lncRNA|chr1:20428583:20428782:-	0	-
#Deleted in new
chr1	20428583	20428788	ENSG00000236963.6|LINC01141|lncRNA|chr1:20428583:20428788:-	0	-
#Deleted in new
chr1	20428583	20428809	ENSG00000236963.6|LINC01141|lncRNA|chr1:20428583:20428809:-	0	-
#Deleted in new
chr1	204435336	204435461	ENSG00000226330.1|AL606489.1|lncRNA|chr1:204435336:204435461:+	0	+
#Partially deleted in new
chr1	204435631	204435846	ENSG00000226330.1|AL606489.1|lncRNA|chr1:204435631:204435846:+	0	+
#Deleted in new
chr1	204489815	204489931	ENSG00000133056.13|PIK3C2B|pc|chr1:204489815:204489931:-	0	-
#Deleted in new
chr1	204490067	204490346	ENSG00000133056.13|PIK3C2B|pc|chr1:204490067:204490346:-	0	-
#Deleted in new
chr1	204490067	204490424	ENSG00000133056.13|PIK3C2B|pc|chr1:204490067:204490424:-	0	-
#Deleted in new
chr1	204532768	204532819	ENSG00000198625.12|MDM4|pc|chr1:204532768:204532819:+	0	+
#Split in new
chr1	204549112	204552028	ENSG00000198625.12|MDM4|pc|chr1:204549112:204552028:+	0	+
#Split in new
chr1	204549112	204554201	ENSG00000198625.12|MDM4|pc|chr1:204549112:204554201:+	0	+
#Partially deleted in new
chr1	204552537	204554200	ENSG00000198625.12|MDM4|pc|chr1:204552537:204554200:+	0	+
#Deleted in new
chr1	204603034	204603151	ENSG00000240710.1|AL512306.3|lncRNA|chr1:204603034:204603151:+	0	+
#Deleted in new
chr1	204615186	204615269	ENSG00000240710.1|AL512306.3|lncRNA|chr1:204615186:204615269:+	0	+
#Deleted in new
chr1	2049202	2049468	ENSG00000226969.1|AL391845.1|lncRNA|chr1:2049202:2049468:-	0	-
#Deleted in new
chr1	2049303	2049468	ENSG00000226969.1|AL391845.1|lncRNA|chr1:2049303:2049468:-	0	-
#Deleted in new
chr1	2049597	2049651	ENSG00000226969.1|AL391845.1|lncRNA|chr1:2049597:2049651:-	0	-
#Deleted in new
chr1	2049597	2049666	ENSG00000226969.1|AL391845.1|lncRNA|chr1:2049597:2049666:-	0	-
#Deleted in new
chr1	205012796	205012866	ENSG00000163531.15|NFASC|pc|chr1:205012796:205012866:+	0	+
#Partially deleted in new
chr1	205059582	205060687	ENSG00000184144.11|CNTN2|pc|chr1:205059582:205060687:+	0	+
#Partially deleted in new
chr1	205173036	205173393	ENSG00000133059.16|DSTYK|pc|chr1:205173036:205173393:-	0	-
#Partially deleted in new
chr1	205344133	205344182	ENSG00000162873.14|KLHDC8A|pc|chr1:205344133:205344182:-	0	-
#Deleted in new
chr1	205348375	205348590	ENSG00000162873.14|KLHDC8A|pc|chr1:205348375:205348590:-	0	-
#Deleted in new
chr1	205382026	205382144	ENSG00000226235.1|LEMD1-AS1|lncRNA|chr1:205382026:205382144:+	0	+
#Partially deleted in new
chr1	205385232	205387440	ENSG00000226235.1|LEMD1-AS1|lncRNA|chr1:205385232:205387440:+	0	+
#Partially deleted in new
chr1	205466620	205469024	ENSG00000224717.1|AC098936.1|lncRNA|chr1:205466620:205469024:+	0	+
#Deleted in new
chr1	205603200	205603353	ENSG00000158711.13|ELK4|pc|chr1:205603200:205603353:-	0	-
#Deleted in new
chr1	205983742	205984204	ENSG00000276600.4|RAB7B|pc|chr1:205983742:205984204:-	0	-
#Deleted in new
chr1	206051741	206052001	ENSG00000263961.6|C1orf186|pc|chr1:206051741:206052001:+	0	+
#Deleted in new
chr1	206051790	206052001	ENSG00000263961.6|C1orf186|pc|chr1:206051790:206052001:+	0	+
#Deleted in new
chr1	206051852	206052001	ENSG00000263961.6|C1orf186|pc|chr1:206051852:206052001:+	0	+
#Deleted in new
chr1	206052722	206053265	ENSG00000263961.6|C1orf186|pc|chr1:206052722:206053265:+	0	+
#Deleted in new
chr1	206052844	206053265	ENSG00000263961.6|C1orf186|pc|chr1:206052844:206053265:+	0	+
#Deleted in new
chr1	206053020	206053101	ENSG00000263961.6|C1orf186|pc|chr1:206053020:206053101:+	0	+
#Deleted in new
chr1	206053020	206053137	ENSG00000263961.6|C1orf186|pc|chr1:206053020:206053137:+	0	+
#Deleted in new
chr1	206053020	206053334	ENSG00000263961.6|C1orf186|pc|chr1:206053020:206053334:+	0	+
#Deleted in new
chr1	206056370	206056463	ENSG00000263961.6|C1orf186|pc|chr1:206056370:206056463:+	0	+
#Deleted in new
chr1	206060400	206060449	ENSG00000263961.6|C1orf186|pc|chr1:206060400:206060449:+	0	+
#Deleted in new
chr1	206061157	206061397	ENSG00000263961.6|C1orf186|pc|chr1:206061157:206061397:+	0	+
#Deleted in new
chr1	206061344	206061397	ENSG00000263961.6|C1orf186|pc|chr1:206061344:206061397:+	0	+
#Deleted in new
chr1	206061661	206061913	ENSG00000263961.6|C1orf186|pc|chr1:206061661:206061913:+	0	+
#Deleted in new
chr1	206061661	206061924	ENSG00000263961.6|C1orf186|pc|chr1:206061661:206061924:+	0	+
#Deleted in new
chr1	206061661	206062257	ENSG00000263961.6|C1orf186|pc|chr1:206061661:206062257:+	0	+
#Deleted in new
chr1	206083562	206083650	ENSG00000263961.6|C1orf186|pc|chr1:206083562:206083650:+	0	+
#Deleted in new
chr1	206083570	206083650	ENSG00000263961.6|C1orf186|pc|chr1:206083570:206083650:+	0	+
#Deleted in new
chr1	206097660	206097839	ENSG00000263961.6|C1orf186|pc|chr1:206097660:206097839:+	0	+
#Deleted in new
chr1	206097698	206097839	ENSG00000263961.6|C1orf186|pc|chr1:206097698:206097839:+	0	+
#Deleted in new
chr1	206097732	206097839	ENSG00000263961.6|C1orf186|pc|chr1:206097732:206097839:+	0	+
#Deleted in new
chr1	206098080	206098181	ENSG00000263961.6|C1orf186|pc|chr1:206098080:206098181:+	0	+
#Deleted in new
chr1	206098080	206098537	ENSG00000263961.6|C1orf186|pc|chr1:206098080:206098537:+	0	+
#Deleted in new
chr1	206099654	206099798	ENSG00000263961.6|C1orf186|pc|chr1:206099654:206099798:+	0	+
#Deleted in new
chr1	206117782	206117825	ENSG00000226780.1|AC244035.2|lncRNA|chr1:206117782:206117825:+	0	+
#Deleted in new
chr1	206126489	206126805	ENSG00000226780.1|AC244035.2|lncRNA|chr1:206126489:206126805:+	0	+
#Partially deleted in new
chr1	206214722	206214840	ENSG00000266028.7|SRGAP2|pc|chr1:206214722:206214840:+	0	+
#Partially deleted in new
chr1	20638128	20639992	ENSG00000158828.7|PINK1|pc|chr1:20638128:20639992:+	0	+
#Deleted in new
chr1	20642656	20643118	ENSG00000117242.7|PINK1-AS|lncRNA|chr1:20642656:20643118:-	0	-
#Partially deleted in new
chr1	206541757	206544892	ENSG00000279946.1|AC244034.3|lncRNA|chr1:206541757:206544892:+	0	+
#Deleted in new
chr1	206571291	206571493	ENSG00000143486.15|EIF2D|pc|chr1:206571291:206571493:-	0	-
#Deleted in new
chr1	206572594	206572699	ENSG00000143486.15|EIF2D|pc|chr1:206572594:206572699:-	0	-
#Deleted in new
chr1	206604608	206604729	ENSG00000143486.15|EIF2D|pc|chr1:206604608:206604729:-	0	-
#Deleted in new
chr1	206634648	206634983	ENSG00000237605.1|AL591846.2|lncRNA|chr1:206634648:206634983:-	0	-
#Deleted in new
chr1	20672879	20673020	ENSG00000117245.12|KIF17|pc|chr1:20672879:20673020:-	0	-
#Deleted in new
chr1	206828876	206829126	ENSG00000142224.15|IL19|pc|chr1:206828876:206829126:+	0	+
#Deleted in new
chr1	20685251	20685283	ENSG00000117245.12|KIF17|pc|chr1:20685251:20685283:-	0	-
#Deleted in new
chr1	206897832	206897876	ENSG00000162892.15|IL24|pc|chr1:206897832:206897876:+	0	+
#Deleted in new
chr1	206921340	206921433	ENSG00000162894.11|FCMR|pc|chr1:206921340:206921433:-	0	-
#Deleted in new
chr1	207042168	207042212	ENSG00000123836.14|PFKFB2|pc|chr1:207042168:207042212:+	0	+
#Deleted in new
chr1	207060845	207060930	ENSG00000123836.14|PFKFB2|pc|chr1:207060845:207060930:+	0	+
#Deleted in new
chr1	207088841	207088946	ENSG00000123843.12|C4BPB|pc|chr1:207088841:207088946:+	0	+
#Deleted in new
chr1	207088893	207088946	ENSG00000123843.12|C4BPB|pc|chr1:207088893:207088946:+	0	+
#Deleted in new
chr1	207089212	207089361	ENSG00000123843.12|C4BPB|pc|chr1:207089212:207089361:+	0	+
#Deleted in new
chr1	207089237	207089589	ENSG00000123843.12|C4BPB|pc|chr1:207089237:207089589:+	0	+
#Deleted in new
chr1	207089238	207089589	ENSG00000123843.12|C4BPB|pc|chr1:207089238:207089589:+	0	+
#Deleted in new
chr1	207089282	207089361	ENSG00000123843.12|C4BPB|pc|chr1:207089282:207089361:+	0	+
#Deleted in new
chr1	207089481	207089589	ENSG00000123843.12|C4BPB|pc|chr1:207089481:207089589:+	0	+
#Partially deleted in new
chr1	207094933	207096615	ENSG00000123843.12|C4BPB|pc|chr1:207094933:207096615:+	0	+
#Deleted in new
chr1	207114675	207114771	ENSG00000123838.10|C4BPA|pc|chr1:207114675:207114771:+	0	+
#Partially deleted in new
chr1	2071298	2071536	ENSG00000067606.16|PRKCZ|pc|chr1:2071298:2071536:+	0	+
#Deleted in new
chr1	207240121	207240193	ENSG00000237074.2|AL596218.1|lncRNA|chr1:207240121:207240193:+	0	+
#Deleted in new
chr1	207244432	207244536	ENSG00000237074.2|AL596218.1|lncRNA|chr1:207244432:207244536:+	0	+
#Deleted in new
chr1	207249066	207249150	ENSG00000237074.2|AL596218.1|lncRNA|chr1:207249066:207249150:+	0	+
#Deleted in new
chr1	207264996	207265036	ENSG00000237074.2|AL596218.1|lncRNA|chr1:207264996:207265036:+	0	+
#Deleted in new
chr1	207308466	207309121	ENSG00000237074.2|AL596218.1|lncRNA|chr1:207308466:207309121:+	0	+
#Deleted in new
chr1	207308466	207309292	ENSG00000237074.2|AL596218.1|lncRNA|chr1:207308466:207309292:+	0	+
#Deleted in new
chr1	207322235	207322289	ENSG00000196352.14|CD55|pc|chr1:207322235:207322289:+	0	+
#Deleted in new
chr1	20733799	20733952	ENSG00000233069.1|AL663074.1|lncRNA|chr1:20733799:20733952:+	0	+
#Deleted in new
chr1	207340390	207340508	ENSG00000196352.14|CD55|pc|chr1:207340390:207340508:+	0	+
#Deleted in new
chr1	207340390	207340766	ENSG00000196352.14|CD55|pc|chr1:207340390:207340766:+	0	+
#Duplicated in new
chr1	207359545	207360966	ENSG00000196352.14|CD55|pc|chr1:207359545:207360966:+	0	+
#Deleted in new
chr1	207367369	207367487	ENSG00000196352.14|CD55|pc|chr1:207367369:207367487:+	0	+
#Deleted in new
chr1	207370708	207370834	ENSG00000196352.14|CD55|pc|chr1:207370708:207370834:+	0	+
#Deleted in new
chr1	207372558	207373252	ENSG00000274245.1|AL391597.1|lncRNA|chr1:207372558:207373252:+	0	+
#Deleted in new
chr1	207372768	207373252	ENSG00000196352.14|CD55|pc|chr1:207372768:207373252:+	0	+
#Deleted in new
chr1	207385221	207385406	ENSG00000196352.14|CD55|pc|chr1:207385221:207385406:+	0	+
#Deleted in new
chr1	207386205	207386804	ENSG00000196352.14|CD55|pc|chr1:207386205:207386804:+	0	+
#Deleted in new
chr1	207401690	207401884	ENSG00000283044.1|AL391597.2|lncRNA|chr1:207401690:207401884:-	0	-
#Deleted in new
chr1	207416051	207416236	ENSG00000283044.1|AL391597.2|lncRNA|chr1:207416051:207416236:-	0	-
#Partially deleted in new
chr1	207471853	207471972	ENSG00000117322.17|CR2|pc|chr1:207471853:207471972:+	0	+
#Partially deleted in new
chr1	207489141	207489895	ENSG00000117322.17|CR2|pc|chr1:207489141:207489895:+	0	+
#Split in new
chr1	207534196	207534995	ENSG00000203710.10|CR1|pc|chr1:207534196:207534995:+	0	+
#Deleted in new
chr1	207559049	207559484	ENSG00000203710.10|CR1|pc|chr1:207559049:207559484:+	0	+
#Partially deleted in new
chr1	207569846	207570645	ENSG00000203710.10|CR1|pc|chr1:207569846:207570645:+	0	+
#Deleted in new
chr1	207598845	207599006	ENSG00000236911.6|AL137789.1|lncRNA|chr1:207598845:207599006:-	0	-
#Deleted in new
chr1	207600624	207600855	ENSG00000236911.6|AL137789.1|lncRNA|chr1:207600624:207600855:-	0	-
#Deleted in new
chr1	207605880	207605983	ENSG00000236911.6|AL137789.1|lncRNA|chr1:207605880:207605983:-	0	-
#Deleted in new
chr1	207606467	207606555	ENSG00000236911.6|AL137789.1|lncRNA|chr1:207606467:207606555:-	0	-
#Deleted in new
chr1	207606492	207606555	ENSG00000236911.6|AL137789.1|lncRNA|chr1:207606492:207606555:-	0	-
#Deleted in new
chr1	207669115	207669216	ENSG00000197721.16|CR1L|pc|chr1:207669115:207669216:+	0	+
#Deleted in new
chr1	207669438	207669565	ENSG00000197721.16|CR1L|pc|chr1:207669438:207669565:+	0	+
#Deleted in new
chr1	207723617	207723641	ENSG00000197721.16|CR1L|pc|chr1:207723617:207723641:+	0	+
#Deleted in new
chr1	207723617	207723703	ENSG00000197721.16|CR1L|pc|chr1:207723617:207723703:+	0	+
#Partially deleted in new
chr1	20773450	20775005	ENSG00000127483.17|HP1BP3|pc|chr1:20773450:20775005:-	0	-
#Deleted in new
chr1	207738403	207738416	ENSG00000197721.16|CR1L|pc|chr1:207738403:207738416:+	0	+
#Deleted in new
chr1	20775654	20776005	ENSG00000127483.17|HP1BP3|pc|chr1:20775654:20776005:-	0	-
#Deleted in new
chr1	207768117	207768772	ENSG00000117335.19|CD46|pc|chr1:207768117:207768772:+	0	+
#Deleted in new
chr1	207790252	207790345	ENSG00000117335.19|CD46|pc|chr1:207790252:207790345:+	0	+
#Deleted in new
chr1	207793518	207793608	ENSG00000117335.19|CD46|pc|chr1:207793518:207793608:+	0	+
#Deleted in new
chr1	207793518	207793646	ENSG00000117335.19|CD46|pc|chr1:207793518:207793646:+	0	+
#Deleted in new
chr1	207793518	207793873	ENSG00000117335.19|CD46|pc|chr1:207793518:207793873:+	0	+
#Partially deleted in new
chr1	207793518	207794780	ENSG00000117335.19|CD46|pc|chr1:207793518:207794780:+	0	+
#Deleted in new
chr1	20786185	20786283	ENSG00000127483.17|HP1BP3|pc|chr1:20786185:20786283:-	0	-
#Deleted in new
chr1	207878879	207879073	ENSG00000203709.11|C1orf132|lncRNA|chr1:207878879:207879073:-	0	-
#Deleted in new
chr1	207878879	207879096	ENSG00000203709.11|C1orf132|lncRNA|chr1:207878879:207879096:-	0	-
#Deleted in new
chr1	208728687	208728734	ENSG00000232812.1|LINC01717|lncRNA|chr1:208728687:208728734:+	0	+
#Deleted in new
chr1	208729142	208729277	ENSG00000232812.1|LINC01717|lncRNA|chr1:208729142:208729277:+	0	+
#Partially deleted in new
chr1	208729817	208730075	ENSG00000232812.1|LINC01717|lncRNA|chr1:208729817:208730075:+	0	+
#Deleted in new
chr1	209151404	209151505	ENSG00000232537.1|AC092810.3|lncRNA|chr1:209151404:209151505:-	0	-
#Deleted in new
chr1	209155057	209155101	ENSG00000232537.1|AC092810.3|lncRNA|chr1:209155057:209155101:-	0	-
#Deleted in new
chr1	20929369	20929592	ENSG00000075151.20|EIF4G3|pc|chr1:20929369:20929592:-	0	-
#Partially deleted in new
chr1	209429303	209429408	ENSG00000230937.11|MIR205HG|lncRNA|chr1:209429303:209429408:+	0	+
#Deleted in new
chr1	209540697	209540788	ENSG00000224260.6|AL023754.1|lncRNA|chr1:209540697:209540788:-	0	-
#Deleted in new
chr1	209546012	209546139	ENSG00000224260.6|AL023754.1|lncRNA|chr1:209546012:209546139:-	0	-
#Deleted in new
chr1	209546056	209546139	ENSG00000224260.6|AL023754.1|lncRNA|chr1:209546056:209546139:-	0	-
#Deleted in new
chr1	209566911	209566987	ENSG00000224260.6|AL023754.1|lncRNA|chr1:209566911:209566987:-	0	-
#Deleted in new
chr1	209567535	209567673	ENSG00000224260.6|AL023754.1|lncRNA|chr1:209567535:209567673:-	0	-
#Deleted in new
chr1	209661363	209661567	ENSG00000227591.5|AL031316.1|lncRNA|chr1:209661363:209661567:-	0	-
#Deleted in new
chr1	209661365	209661567	ENSG00000227591.5|AL031316.1|lncRNA|chr1:209661365:209661567:-	0	-
#Deleted in new
chr1	209724029	209724125	ENSG00000227591.5|AL031316.1|lncRNA|chr1:209724029:209724125:-	0	-
#Deleted in new
chr1	2098346	2098555	ENSG00000067606.16|PRKCZ|pc|chr1:2098346:2098555:+	0	+
#Partially deleted in new
chr1	209851203	209857565	ENSG00000117597.17|DIEXF|pc|chr1:209851203:209857565:+	0	+
#Deleted in new
chr1	209965892	209966013	ENSG00000143469.18|SYT14|pc|chr1:209965892:209966013:+	0	+
#Deleted in new
chr12	100026247	100027540	ENSG00000279148.1|AC126474.1|lncRNA|chr12:100026247:100027540:-	0	-
#Deleted in new
chr12	100028454	100028610	ENSG00000111647.12|UHRF1BP1L|pc|chr12:100028454:100028610:-	0	-
#Partially deleted in new
chr12	100032324	100034074	ENSG00000280088.1|AC126474.2|lncRNA|chr12:100032324:100034074:-	0	-
#Deleted in new
chr12	100069907	100070169	ENSG00000111647.12|UHRF1BP1L|pc|chr12:100069907:100070169:-	0	-
#Deleted in new
chr12	100092721	100092890	ENSG00000111647.12|UHRF1BP1L|pc|chr12:100092721:100092890:-	0	-
#Deleted in new
chr12	100092902	100092964	ENSG00000111647.12|UHRF1BP1L|pc|chr12:100092902:100092964:-	0	-
#Deleted in new
chr12	100092908	100092931	ENSG00000111647.12|UHRF1BP1L|pc|chr12:100092908:100092931:-	0	-
#Deleted in new
chr12	100092908	100092948	ENSG00000111647.12|UHRF1BP1L|pc|chr12:100092908:100092948:-	0	-
#Deleted in new
chr12	100144539	100144671	ENSG00000257696.1|AC010203.2|lncRNA|chr12:100144539:100144671:+	0	+
#Deleted in new
chr12	100203668	100204294	ENSG00000166153.16|DEPDC4|pc|chr12:100203668:100204294:-	0	-
#Deleted in new
chr12	100206197	100206258	ENSG00000075089.9|ACTR6|pc|chr12:100206197:100206258:+	0	+
#Deleted in new
chr12	100208771	100208889	ENSG00000075089.9|ACTR6|pc|chr12:100208771:100208889:+	0	+
#Deleted in new
chr12	100221669	100221793	ENSG00000166153.16|DEPDC4|pc|chr12:100221669:100221793:-	0	-
#Deleted in new
chr12	100237799	100238117	ENSG00000166153.16|DEPDC4|pc|chr12:100237799:100238117:-	0	-
#Deleted in new
chr12	100237967	100238117	ENSG00000166153.16|DEPDC4|pc|chr12:100237967:100238117:-	0	-
#Deleted in new
chr12	100242485	100242569	ENSG00000166153.16|DEPDC4|pc|chr12:100242485:100242569:-	0	-
#Deleted in new
chr12	100253488	100253715	ENSG00000166153.16|DEPDC4|pc|chr12:100253488:100253715:-	0	-
#Deleted in new
chr12	100261729	100261768	ENSG00000166153.16|DEPDC4|pc|chr12:100261729:100261768:-	0	-
#Deleted in new
chr12	100262263	100262356	ENSG00000166153.16|DEPDC4|pc|chr12:100262263:100262356:-	0	-
#Deleted in new
chr12	100262263	100262409	ENSG00000166153.16|DEPDC4|pc|chr12:100262263:100262409:-	0	-
#Deleted in new
chr12	10027914	10028098	ENSG00000256803.1|AC024224.2|lncRNA|chr12:10027914:10028098:-	0	-
#Deleted in new
chr12	100296761	100296807	ENSG00000136021.18|SCYL2|pc|chr12:100296761:100296807:+	0	+
#Deleted in new
chr12	10030542	10030606	ENSG00000256803.1|AC024224.2|lncRNA|chr12:10030542:10030606:-	0	-
#Deleted in new
chr12	10030676	10030972	ENSG00000197992.6|CLEC9A|pc|chr12:10030676:10030972:+	0	+
#Deleted in new
chr12	10030677	10030972	ENSG00000197992.6|CLEC9A|pc|chr12:10030677:10030972:+	0	+
#Deleted in new
chr12	100319223	100319286	ENSG00000136021.18|SCYL2|pc|chr12:100319223:100319286:+	0	+
#Deleted in new
chr12	100327184	100327234	ENSG00000136021.18|SCYL2|pc|chr12:100327184:100327234:+	0	+
#Deleted in new
chr12	100410620	100410699	ENSG00000179520.10|SLC17A8|pc|chr12:100410620:100410699:+	0	+
#Deleted in new
chr12	100611007	100611263	ENSG00000139354.10|GAS2L3|pc|chr12:100611007:100611263:+	0	+
#Partially deleted in new
chr12	100859064	100859262	ENSG00000257325.1|AC138360.1|lncRNA|chr12:100859064:100859262:-	0	-
#Deleted in new
chr12	10092421	10092519	ENSG00000150048.10|CLEC1A|pc|chr12:10092421:10092519:-	0	-
#Deleted in new
chr12	101039025	101039094	ENSG00000258007.1|AC063947.1|lncRNA|chr12:101039025:101039094:-	0	-
#Partially deleted in new
chr12	10111284	10111627	ENSG00000150048.10|CLEC1A|pc|chr12:10111284:10111627:-	0	-
#Partially deleted in new
chr12	10125086	10125173	ENSG00000172243.17|CLEC7A|pc|chr12:10125086:10125173:-	0	-
#Partially deleted in new
chr12	101385967	101386616	ENSG00000120800.4|UTP20|pc|chr12:101385967:101386616:+	0	+
#Deleted in new
chr12	101400290	101400381	ENSG00000120805.13|ARL1|pc|chr12:101400290:101400381:-	0	-
#Deleted in new
chr12	101403141	101403255	ENSG00000120805.13|ARL1|pc|chr12:101403141:101403255:-	0	-
#Partially deleted in new
chr12	101408371	101408531	ENSG00000257543.1|AC063948.1|lncRNA|chr12:101408371:101408531:-	0	-
#Deleted in new
chr12	101408841	101409060	ENSG00000257543.1|AC063948.1|lncRNA|chr12:101408841:101409060:-	0	-
#Partially deleted in new
chr12	101475420	101475502	ENSG00000166211.7|SPIC|pc|chr12:101475420:101475502:+	0	+
#Deleted in new
chr12	101476827	101476907	ENSG00000166211.7|SPIC|pc|chr12:101476827:101476907:+	0	+
#Partially deleted in new
chr12	101696001	101696450	ENSG00000274560.1|AC010205.1|lncRNA|chr12:101696001:101696450:-	0	-
#Partially deleted in new
chr12	10170541	10170851	ENSG00000165685.8|TMEM52B|pc|chr12:10170541:10170851:+	0	+
#Partially deleted in new
chr12	10170629	10170851	ENSG00000165685.8|TMEM52B|pc|chr12:10170629:10170851:+	0	+
#Deleted in new
chr12	101717236	101717394	ENSG00000111666.10|CHPT1|pc|chr12:101717236:101717394:+	0	+
#Deleted in new
chr12	101730520	101730636	ENSG00000111666.10|CHPT1|pc|chr12:101730520:101730636:+	0	+
#Deleted in new
chr12	101739350	101739413	ENSG00000139351.14|SYCP3|pc|chr12:101739350:101739413:-	0	-
#Partially deleted in new
chr12	101739350	101739469	ENSG00000139351.14|SYCP3|pc|chr12:101739350:101739469:-	0	-
#Deleted in new
chr12	101739361	101739426	ENSG00000139351.14|SYCP3|pc|chr12:101739361:101739426:-	0	-
#Deleted in new
chr12	101739577	101739769	ENSG00000111666.10|CHPT1|pc|chr12:101739577:101739769:+	0	+
#Deleted in new
chr12	101743714	101744010	ENSG00000111666.10|CHPT1|pc|chr12:101743714:101744010:+	0	+
#Deleted in new
chr12	101743714	101744140	ENSG00000111666.10|CHPT1|pc|chr12:101743714:101744140:+	0	+
#Deleted in new
chr12	101756214	101756566	ENSG00000111670.14|GNPTAB|pc|chr12:101756214:101756566:-	0	-
#Deleted in new
chr12	101756419	101756566	ENSG00000111670.14|GNPTAB|pc|chr12:101756419:101756566:-	0	-
#Deleted in new
chr12	101890087	101890221	ENSG00000136048.13|DRAM1|pc|chr12:101890087:101890221:+	0	+
#Deleted in new
chr12	101962249	101962390	ENSG00000258308.5|AC079907.2|lncRNA|chr12:101962249:101962390:-	0	-
#Partially deleted in new
chr12	102011812	102012130	ENSG00000136048.13|DRAM1|pc|chr12:102011812:102012130:+	0	+
#Deleted in new
chr12	102017719	102017805	ENSG00000120860.10|WASHC3|pc|chr12:102017719:102017805:-	0	-
#Deleted in new
chr12	102019276	102019371	ENSG00000120860.10|WASHC3|pc|chr12:102019276:102019371:-	0	-
#Deleted in new
chr12	102048289	102048397	ENSG00000120860.10|WASHC3|pc|chr12:102048289:102048397:-	0	-
#Deleted in new
chr12	102050188	102050291	ENSG00000120860.10|WASHC3|pc|chr12:102050188:102050291:-	0	-
#Deleted in new
chr12	102050517	102050639	ENSG00000120860.10|WASHC3|pc|chr12:102050517:102050639:-	0	-
#Deleted in new
chr12	102063354	102063421	ENSG00000257222.1|AC079907.1|lncRNA|chr12:102063354:102063421:+	0	+
#Deleted in new
chr12	1020674	1020776	ENSG00000082805.19|ERC1|pc|chr12:1020674:1020776:+	0	+
#Partially deleted in new
chr12	102073102	102074467	ENSG00000075188.8|NUP37|pc|chr12:102073102:102074467:-	0	-
#Deleted in new
chr12	102079058	102079216	ENSG00000075188.8|NUP37|pc|chr12:102079058:102079216:-	0	-
#Deleted in new
chr12	102079077	102079216	ENSG00000075188.8|NUP37|pc|chr12:102079077:102079216:-	0	-
#Deleted in new
chr12	102115802	102115864	ENSG00000075188.8|NUP37|pc|chr12:102115802:102115864:-	0	-
#Deleted in new
chr12	102154826	102155280	ENSG00000185480.11|PARPBP|pc|chr12:102154826:102155280:+	0	+
#Split in new
chr12	102197584	102402596	ENSG00000281344.1|HELLPAR|lncRNA|chr12:102197584:102402596:+	0	+
#Deleted in new
chr12	10226057	10226233	ENSG00000134539.16|KLRD1|pc|chr12:10226057:10226233:+	0	+
#Deleted in new
chr12	10226065	10226233	ENSG00000134539.16|KLRD1|pc|chr12:10226065:10226233:+	0	+
#Deleted in new
chr12	102304354	102304448	ENSG00000283052.1|LINC02456|lncRNA|chr12:102304354:102304448:+	0	+
#Deleted in new
chr12	102304631	102304756	ENSG00000283052.1|LINC02456|lncRNA|chr12:102304631:102304756:+	0	+
#Deleted in new
chr12	102315310	102315490	ENSG00000283052.1|LINC02456|lncRNA|chr12:102315310:102315490:+	0	+
#Deleted in new
chr12	102813867	102813972	ENSG00000258169.1|LINC00485|lncRNA|chr12:102813867:102813972:-	0	-
#Deleted in new
chr12	102824295	102824399	ENSG00000258169.1|LINC00485|lncRNA|chr12:102824295:102824399:-	0	-
#Deleted in new
chr12	102915162	102915192	ENSG00000171759.9|PAH|pc|chr12:102915162:102915192:-	0	-
#Deleted in new
chr12	102923572	102923595	ENSG00000171759.9|PAH|pc|chr12:102923572:102923595:-	0	-
#Deleted in new
chr12	102945087	102945153	ENSG00000171759.9|PAH|pc|chr12:102945087:102945153:-	0	-
#Deleted in new
chr12	102945958	102946038	ENSG00000171759.9|PAH|pc|chr12:102945958:102946038:-	0	-
#Deleted in new
chr12	102946581	102946802	ENSG00000171759.9|PAH|pc|chr12:102946581:102946802:-	0	-
#Deleted in new
chr12	102946742	102946802	ENSG00000171759.9|PAH|pc|chr12:102946742:102946802:-	0	-
#Deleted in new
chr12	10304445	10304547	ENSG00000134539.16|KLRD1|pc|chr12:10304445:10304547:+	0	+
#Deleted in new
chr12	10304465	10304547	ENSG00000134539.16|KLRD1|pc|chr12:10304465:10304547:+	0	+
#Partially deleted in new
chr12	103081089	103081537	ENSG00000257703.5|AC068643.1|lncRNA|chr12:103081089:103081537:-	0	-
#Partially deleted in new
chr12	10314672	10317251	ENSG00000134539.16|KLRD1|pc|chr12:10314672:10317251:+	0	+
#Partially deleted in new
chr12	10314672	10329600	ENSG00000134539.16|KLRD1|pc|chr12:10314672:10329600:+	0	+
#Deleted in new
chr12	103151841	103151918	ENSG00000257860.5|AC068643.2|lncRNA|chr12:103151841:103151918:+	0	+
#Deleted in new
chr12	103151854	103151918	ENSG00000257860.5|AC068643.2|lncRNA|chr12:103151854:103151918:+	0	+
#Deleted in new
chr12	10315312	10315637	ENSG00000134539.16|KLRD1|pc|chr12:10315312:10315637:+	0	+
#Deleted in new
chr12	103164399	103164437	ENSG00000257860.5|AC068643.2|lncRNA|chr12:103164399:103164437:+	0	+
#Deleted in new
chr12	103164402	103164437	ENSG00000257860.5|AC068643.2|lncRNA|chr12:103164402:103164437:+	0	+
#Deleted in new
chr12	103164690	103164763	ENSG00000257860.5|AC068643.2|lncRNA|chr12:103164690:103164763:+	0	+
#Deleted in new
chr12	103263307	103263371	ENSG00000179088.14|C12orf42|pc|chr12:103263307:103263371:-	0	-
#Deleted in new
chr12	103263325	103263371	ENSG00000179088.14|C12orf42|pc|chr12:103263325:103263371:-	0	-
#Deleted in new
chr12	103277149	103277210	ENSG00000179088.14|C12orf42|pc|chr12:103277149:103277210:-	0	-
#Deleted in new
chr1	210328251	210328384	ENSG00000054392.12|HHAT|pc|chr1:210328251:210328384:+	0	+
#Deleted in new
chr1	210328905	210329104	ENSG00000054392.12|HHAT|pc|chr1:210328905:210329104:+	0	+
#Deleted in new
chr1	210328952	210329104	ENSG00000054392.12|HHAT|pc|chr1:210328952:210329104:+	0	+
#Partially deleted in new
chr1	210329299	210329483	ENSG00000054392.12|HHAT|pc|chr1:210329299:210329483:+	0	+
#Deleted in new
chr12	10332860	10333063	ENSG00000256288.1|AC022075.3|lncRNA|chr12:10332860:10333063:-	0	-
#Deleted in new
chr12	103349122	103349313	ENSG00000179088.14|C12orf42|pc|chr12:103349122:103349313:-	0	-
#Deleted in new
chr12	10336111	10336309	ENSG00000256288.1|AC022075.3|lncRNA|chr12:10336111:10336309:-	0	-
#Deleted in new
chr12	10338044	10338292	ENSG00000256288.1|AC022075.3|lncRNA|chr12:10338044:10338292:-	0	-
#Deleted in new
chr12	103397695	103397753	ENSG00000179088.14|C12orf42|pc|chr12:103397695:103397753:-	0	-
#Deleted in new
chr12	103431212	103431298	ENSG00000179088.14|C12orf42|pc|chr12:103431212:103431298:-	0	-
#Deleted in new
chr12	103471971	103472010	ENSG00000179088.14|C12orf42|pc|chr12:103471971:103472010:-	0	-
#Partially deleted in new
chr12	103476899	103477006	ENSG00000179088.14|C12orf42|pc|chr12:103476899:103477006:-	0	-
#Deleted in new
chr12	103547793	103547925	ENSG00000257762.5|LINC02401|lncRNA|chr12:103547793:103547925:+	0	+
#Deleted in new
chr12	103547825	103547925	ENSG00000257762.5|LINC02401|lncRNA|chr12:103547825:103547925:+	0	+
#Deleted in new
chr12	103549497	103549597	ENSG00000257762.5|LINC02401|lncRNA|chr12:103549497:103549597:+	0	+
#Deleted in new
chr12	103550461	103550571	ENSG00000257762.5|LINC02401|lncRNA|chr12:103550461:103550571:+	0	+
#Deleted in new
chr12	103550461	103550661	ENSG00000257762.5|LINC02401|lncRNA|chr12:103550461:103550661:+	0	+
#Deleted in new
chr12	103557411	103559815	ENSG00000257762.5|LINC02401|lncRNA|chr12:103557411:103559815:+	0	+
#Deleted in new
chr12	10358463	10358563	ENSG00000256155.1|AC022075.2|lncRNA|chr12:10358463:10358563:-	0	-
#Deleted in new
chr12	10360583	10361045	ENSG00000256155.1|AC022075.2|lncRNA|chr12:10360583:10361045:-	0	-
#Deleted in new
chr12	10363768	10364033	ENSG00000245648.1|AC022075.1|lncRNA|chr12:10363768:10364033:+	0	+
#Partially deleted in new
chr12	103669211	103669406	ENSG00000257766.1|AC025265.3|lncRNA|chr12:103669211:103669406:-	0	-
#Deleted in new
chr1	210369714	210369783	ENSG00000054392.12|HHAT|pc|chr1:210369714:210369783:+	0	+
#Deleted in new
chr12	10374034	10374136	ENSG00000245648.1|AC022075.1|lncRNA|chr12:10374034:10374136:+	0	+
#Partially deleted in new
chr12	103766734	103766906	ENSG00000257681.1|AC025265.1|lncRNA|chr12:103766734:103766906:-	0	-
#Partially deleted in new
chr12	103766734	103766913	ENSG00000257681.1|AC025265.1|lncRNA|chr12:103766734:103766913:-	0	-
#Deleted in new
chr12	103768806	103768858	ENSG00000257681.1|AC025265.1|lncRNA|chr12:103768806:103768858:-	0	-
#Deleted in new
chr12	103770452	103771329	ENSG00000111696.11|NT5DC3|pc|chr12:103770452:103771329:-	0	-
#Deleted in new
chr12	103802079	103802401	ENSG00000111696.11|NT5DC3|pc|chr12:103802079:103802401:-	0	-
#Deleted in new
chr12	10381813	10382182	ENSG00000213809.8|KLRK1|pc|chr12:10381813:10382182:-	0	-
#Deleted in new
chr12	103819609	103819728	ENSG00000257754.1|AC012555.2|lncRNA|chr12:103819609:103819728:+	0	+
#Deleted in new
chr12	10391834	10391874	ENSG00000213809.8|KLRK1|pc|chr12:10391834:10391874:-	0	-
#Deleted in new
chr12	10391834	10391891	ENSG00000255819.7|KLRC4-KLRK1|pc|chr12:10391834:10391891:-	0	-
#Deleted in new
chr12	10393809	10393867	ENSG00000255819.7|KLRC4-KLRK1|pc|chr12:10393809:10393867:-	0	-
#Deleted in new
chr12	103938772	103938779	ENSG00000166598.14|HSP90B1|pc|chr12:103938772:103938779:+	0	+
#Split in new
chr12	103950201	103951630	ENSG00000204954.9|C12orf73|pc|chr12:103950201:103951630:-	0	-
#Split in new
chr12	103950206	103951630	ENSG00000204954.9|C12orf73|pc|chr12:103950206:103951630:-	0	-
#Split in new
chr12	103950739	103951630	ENSG00000204954.9|C12orf73|pc|chr12:103950739:103951630:-	0	-
#Split in new
chr12	103950744	103951630	ENSG00000204954.9|C12orf73|pc|chr12:103950744:103951630:-	0	-
#Duplicated in new
chr12	103951281	103951630	ENSG00000204954.9|C12orf73|pc|chr12:103951281:103951630:-	0	-
#Deleted in new
chr12	103954651	103954968	ENSG00000204954.9|C12orf73|pc|chr12:103954651:103954968:-	0	-
#Deleted in new
chr12	103954874	103954968	ENSG00000204954.9|C12orf73|pc|chr12:103954874:103954968:-	0	-
#Deleted in new
chr12	103955705	103955771	ENSG00000204954.9|C12orf73|pc|chr12:103955705:103955771:-	0	-
#Partially deleted in new
chr12	103956303	103956748	ENSG00000204954.9|C12orf73|pc|chr12:103956303:103956748:-	0	-
#Deleted in new
chr12	10396178	10398506	ENSG00000245648.1|AC022075.1|lncRNA|chr12:10396178:10398506:+	0	+
#Deleted in new
chr12	103967853	103967971	ENSG00000139372.14|TDG|pc|chr12:103967853:103967971:+	0	+
#Deleted in new
chr12	103972959	103973033	ENSG00000139372.14|TDG|pc|chr12:103972959:103973033:+	0	+
#Deleted in new
chr12	103986233	103986465	ENSG00000139372.14|TDG|pc|chr12:103986233:103986465:+	0	+
#Deleted in new
chr12	104012598	104012825	ENSG00000120820.12|GLT8D2|pc|chr12:104012598:104012825:-	0	-
#Deleted in new
chr12	104014229	104014347	ENSG00000120820.12|GLT8D2|pc|chr12:104014229:104014347:-	0	-
#Deleted in new
chr12	104021356	104021491	ENSG00000120820.12|GLT8D2|pc|chr12:104021356:104021491:-	0	-
#Partially deleted in new
chr12	104063948	104064183	ENSG00000120820.12|GLT8D2|pc|chr12:104063948:104064183:-	0	-
#Deleted in new
chr12	104090922	104090941	ENSG00000111727.11|HCFC2|pc|chr12:104090922:104090941:+	0	+
#Duplicated in new
chr12	10409388	10409757	ENSG00000183542.5|KLRC4|pc|chr12:10409388:10409757:-	0	-
#Deleted in new
chr12	10412311	10412616	ENSG00000205810.8|KLRC3|pc|chr12:10412311:10412616:-	0	-
#Deleted in new
chr12	10412311	10412616	ENSG00000255641.1|AC068775.2|pc|chr12:10412311:10412616:-	0	-
#Deleted in new
chr12	10415583	10415794	ENSG00000205810.8|KLRC3|pc|chr12:10415583:10415794:-	0	-
#Deleted in new
chr12	10415703	10415794	ENSG00000205810.8|KLRC3|pc|chr12:10415703:10415794:-	0	-
#Deleted in new
chr12	10415703	10415794	ENSG00000255641.1|AC068775.2|pc|chr12:10415703:10415794:-	0	-
#Deleted in new
chr12	104171772	104172036	ENSG00000257193.1|LINC02385|lncRNA|chr12:104171772:104172036:+	0	+
#Deleted in new
chr12	104262313	104262575	ENSG00000257732.1|AC089983.1|lncRNA|chr12:104262313:104262575:-	0	-
#Deleted in new
chr12	10426853	10426877	ENSG00000205809.9|KLRC2|pc|chr12:10426853:10426877:-	0	-
#Deleted in new
chr12	104280283	104280722	ENSG00000257732.1|AC089983.1|lncRNA|chr12:104280283:104280722:-	0	-
#Deleted in new
chr12	104282881	104282976	ENSG00000198431.15|TXNRD1|pc|chr12:104282881:104282976:+	0	+
#Deleted in new
chr12	104290992	104291104	ENSG00000198431.15|TXNRD1|pc|chr12:104290992:104291104:+	0	+
#Deleted in new
chr12	10430598	10431228	ENSG00000205809.9|KLRC2|pc|chr12:10430598:10431228:-	0	-
#Deleted in new
chr12	10430608	10431228	ENSG00000205809.9|KLRC2|pc|chr12:10430608:10431228:-	0	-
#Deleted in new
chr12	10430979	10431228	ENSG00000205809.9|KLRC2|pc|chr12:10430979:10431228:-	0	-
#Deleted in new
chr12	10431019	10431302	ENSG00000205809.9|KLRC2|pc|chr12:10431019:10431302:-	0	-
#Deleted in new
chr12	10431133	10431228	ENSG00000205809.9|KLRC2|pc|chr12:10431133:10431228:-	0	-
#Deleted in new
chr12	10434240	10434250	ENSG00000205809.9|KLRC2|pc|chr12:10434240:10434250:-	0	-
#Partially deleted in new
chr12	104346018	104346155	ENSG00000198431.15|TXNRD1|pc|chr12:104346018:104346155:+	0	+
#Deleted in new
chr12	10434994	10435039	ENSG00000205809.9|KLRC2|pc|chr12:10434994:10435039:-	0	-
#Deleted in new
chr1	210439582	210439753	ENSG00000054392.12|HHAT|pc|chr1:210439582:210439753:+	0	+
#Deleted in new
chr12	10442226	10442300	ENSG00000205809.9|KLRC2|pc|chr12:10442226:10442300:-	0	-
#Deleted in new
chr12	10442263	10442300	ENSG00000134545.13|KLRC1|pc|chr12:10442263:10442300:-	0	-
#Deleted in new
chr12	10446027	10446662	ENSG00000134545.13|KLRC1|pc|chr12:10446027:10446662:-	0	-
#Deleted in new
chr12	10446030	10446662	ENSG00000134545.13|KLRC1|pc|chr12:10446030:10446662:-	0	-
#Deleted in new
chr12	10446040	10446662	ENSG00000134545.13|KLRC1|pc|chr12:10446040:10446662:-	0	-
#Deleted in new
chr12	10446567	10446662	ENSG00000134545.13|KLRC1|pc|chr12:10446567:10446662:-	0	-
#Deleted in new
chr12	10454331	10454616	ENSG00000134545.13|KLRC1|pc|chr12:10454331:10454616:-	0	-
#Deleted in new
chr12	10454331	10454685	ENSG00000134545.13|KLRC1|pc|chr12:10454331:10454685:-	0	-
#Partially deleted in new
chr12	104552072	104553447	ENSG00000279176.1|AC079316.2|lncRNA|chr12:104552072:104553447:+	0	+
#Deleted in new
chr12	104588847	104588943	ENSG00000171310.10|CHST11|pc|chr12:104588847:104588943:+	0	+
#Partially deleted in new
chr1	2104715	2104895	ENSG00000067606.16|PRKCZ|pc|chr1:2104715:2104895:+	0	+
#Partially deleted in new
chr1	2104738	2104895	ENSG00000067606.16|PRKCZ|pc|chr1:2104738:2104895:+	0	+
#Deleted in new
chr12	104931631	104931791	ENSG00000136052.9|SLC41A2|pc|chr12:104931631:104931791:-	0	-
#Split in new
chr12	104994477	105017624	ENSG00000151131.10|C12orf45|pc|chr12:104994477:105017624:+	0	+
#Partially deleted in new
chr12	104995871	104996026	ENSG00000151131.10|C12orf45|pc|chr12:104995871:104996026:+	0	+
#Partially deleted in new
chr12	105019783	105024479	ENSG00000136010.13|ALDH1L2|pc|chr12:105019783:105024479:-	0	-
#Partially deleted in new
chr12	105019789	105024479	ENSG00000136010.13|ALDH1L2|pc|chr12:105019789:105024479:-	0	-
#Deleted in new
chr12	105047452	105048677	ENSG00000151131.10|C12orf45|pc|chr12:105047452:105048677:+	0	+
#Deleted in new
chr12	105049599	105049737	ENSG00000151131.10|C12orf45|pc|chr12:105049599:105049737:+	0	+
#Deleted in new
chr12	105060430	105060827	ENSG00000151131.10|C12orf45|pc|chr12:105060430:105060827:+	0	+
#Deleted in new
chr12	105102471	105102720	ENSG00000257999.1|AC016257.1|lncRNA|chr12:105102471:105102720:-	0	-
#Deleted in new
chr12	105147609	105147905	ENSG00000136051.13|WASHC4|pc|chr12:105147609:105147905:+	0	+
#Deleted in new
chr12	10522602	10523135	ENSG00000180574.3|AC068775.1|pc|chr12:10522602:10523135:+	0	+
#Deleted in new
chr12	105304866	105305149	ENSG00000257642.1|KCCAT198|lncRNA|chr12:105304866:105305149:-	0	-
#Deleted in new
chr12	105308628	105308780	ENSG00000257642.1|KCCAT198|lncRNA|chr12:105308628:105308780:-	0	-
#Partially deleted in new
chr12	105395631	105396097	ENSG00000235162.8|C12orf75|pc|chr12:105395631:105396097:+	0	+
#Deleted in new
chr12	10553362	10553516	ENSG00000256039.1|LINC02446|lncRNA|chr12:10553362:10553516:+	0	+
#Deleted in new
chr12	10557335	10558049	ENSG00000256039.1|LINC02446|lncRNA|chr12:10557335:10558049:+	0	+
#Partially deleted in new
chr12	106050960	106051127	ENSG00000257890.1|AC011595.3|lncRNA|chr12:106050960:106051127:-	0	-
#Deleted in new
chr12	106103162	106103378	ENSG00000257438.1|AC011595.1|lncRNA|chr12:106103162:106103378:+	0	+
#Deleted in new
chr12	106104090	106104228	ENSG00000257438.1|AC011595.1|lncRNA|chr12:106104090:106104228:+	0	+
#Deleted in new
chr12	106245612	106245682	ENSG00000258355.1|AC079174.1|lncRNA|chr12:106245612:106245682:-	0	-
#Deleted in new
chr12	106254077	106254219	ENSG00000136026.13|CKAP4|pc|chr12:106254077:106254219:-	0	-
#Partially deleted in new
chr12	106276414	106276549	ENSG00000136026.13|CKAP4|pc|chr12:106276414:106276549:-	0	-
#Deleted in new
chr12	106312292	106312434	ENSG00000166046.10|TCP11L2|pc|chr12:106312292:106312434:+	0	+
#Deleted in new
chr12	106381971	106382039	ENSG00000013503.9|POLR3B|pc|chr12:106381971:106382039:+	0	+
#Partially deleted in new
chr12	106410243	106410619	ENSG00000013503.9|POLR3B|pc|chr12:106410243:106410619:+	0	+
#Deleted in new
chr1	21064530	21064645	ENSG00000075151.20|EIF4G3|pc|chr1:21064530:21064645:-	0	-
#Deleted in new
chr1	21064759	21064991	ENSG00000075151.20|EIF4G3|pc|chr1:21064759:21064991:-	0	-
#Deleted in new
chr12	106645881	106645936	ENSG00000111783.12|RFX4|pc|chr12:106645881:106645936:+	0	+
#Deleted in new
chr12	106662180	106662262	ENSG00000111783.12|RFX4|pc|chr12:106662180:106662262:+	0	+
#Deleted in new
chr12	10667288	10667455	ENSG00000060140.8|STYK1|pc|chr12:10667288:10667455:-	0	-
#Deleted in new
chr12	106797976	106798069	ENSG00000111785.19|RIC8B|pc|chr12:106797976:106798069:+	0	+
#Deleted in new
chr12	106959269	106959385	ENSG00000151135.9|TMEM263|pc|chr12:106959269:106959385:+	0	+
#Deleted in new
chr12	106959287	106959385	ENSG00000151135.9|TMEM263|pc|chr12:106959287:106959385:+	0	+
#Deleted in new
chr12	106967282	106967401	ENSG00000151135.9|TMEM263|pc|chr12:106967282:106967401:+	0	+
#Deleted in new
chr12	106974950	106975054	ENSG00000151135.9|TMEM263|pc|chr12:106974950:106975054:+	0	+
#Deleted in new
chr12	106980620	106980713	ENSG00000120832.9|MTERF2|pc|chr12:106980620:106980713:-	0	-
#Partially deleted in new
chr12	10701959	10704148	ENSG00000060138.12|YBX3|pc|chr12:10701959:10704148:-	0	-
#Deleted in new
chr12	10702258	10702642	ENSG00000060138.12|YBX3|pc|chr12:10702258:10702642:-	0	-
#Deleted in new
chr12	10702411	10702475	ENSG00000060138.12|YBX3|pc|chr12:10702411:10702475:-	0	-
#Deleted in new
chr12	107042949	107043178	ENSG00000008405.11|CRY1|pc|chr12:107042949:107043178:-	0	-
#Deleted in new
chr12	107049770	107049852	ENSG00000008405.11|CRY1|pc|chr12:107049770:107049852:-	0	-
#Deleted in new
chr12	107049953	107050359	ENSG00000008405.11|CRY1|pc|chr12:107049953:107050359:-	0	-
#Deleted in new
chr12	107072934	107073054	ENSG00000008405.11|CRY1|pc|chr12:107072934:107073054:-	0	-
#Deleted in new
chr12	107097437	107097470	ENSG00000257548.1|AC078929.1|lncRNA|chr12:107097437:107097470:+	0	+
#Deleted in new
chr12	107121972	107122023	ENSG00000257548.1|AC078929.1|lncRNA|chr12:107121972:107122023:+	0	+
#Deleted in new
chr12	107122990	107123314	ENSG00000257548.1|AC078929.1|lncRNA|chr12:107122990:107123314:+	0	+
#Partially deleted in new
chr12	107649205	107650897	ENSG00000151136.14|BTBD11|pc|chr12:107649205:107650897:+	0	+
#Deleted in new
chr12	10769392	10769446	ENSG00000256888.5|LINC02366|lncRNA|chr12:10769392:10769446:+	0	+
#Deleted in new
chr12	10769420	10769446	ENSG00000256888.5|LINC02366|lncRNA|chr12:10769420:10769446:+	0	+
#Deleted in new
chr12	107736554	107736694	ENSG00000258136.1|AC007622.2|lncRNA|chr12:107736554:107736694:+	0	+
#Deleted in new
chr12	107736588	107736947	ENSG00000258136.1|AC007622.2|lncRNA|chr12:107736588:107736947:+	0	+
#Deleted in new
chr12	107738021	107738448	ENSG00000258136.1|AC007622.2|lncRNA|chr12:107738021:107738448:+	0	+
#Deleted in new
chr12	107738021	107738489	ENSG00000258136.1|AC007622.2|lncRNA|chr12:107738021:107738489:+	0	+
#Deleted in new
chr12	10773951	10773984	ENSG00000256888.5|LINC02366|lncRNA|chr12:10773951:10773984:+	0	+
#Deleted in new
chr12	10774805	10774866	ENSG00000256888.5|LINC02366|lncRNA|chr12:10774805:10774866:+	0	+
#Deleted in new
chr12	107758274	107758392	ENSG00000258136.1|AC007622.2|lncRNA|chr12:107758274:107758392:+	0	+
#Deleted in new
chr12	10775864	10775984	ENSG00000256888.5|LINC02366|lncRNA|chr12:10775864:10775984:+	0	+
#Deleted in new
chr12	10777317	10777388	ENSG00000256888.5|LINC02366|lncRNA|chr12:10777317:10777388:+	0	+
#Deleted in new
chr12	10777317	10777439	ENSG00000256888.5|LINC02366|lncRNA|chr12:10777317:10777439:+	0	+
#Deleted in new
chr12	10777317	10777444	ENSG00000256888.5|LINC02366|lncRNA|chr12:10777317:10777444:+	0	+
#Deleted in new
chr12	107834972	107835030	ENSG00000257141.1|AC126177.2|lncRNA|chr12:107834972:107835030:-	0	-
#Deleted in new
chr12	107835540	107836555	ENSG00000274395.1|AC126177.8|lncRNA|chr12:107835540:107836555:-	0	-
#Deleted in new
chr12	107845400	107845587	ENSG00000257398.6|AC126177.4|lncRNA|chr12:107845400:107845587:-	0	-
#Deleted in new
chr12	107845962	107846104	ENSG00000257398.6|AC126177.4|lncRNA|chr12:107845962:107846104:-	0	-
#Deleted in new
chr12	107845962	107846117	ENSG00000257398.6|AC126177.4|lncRNA|chr12:107845962:107846117:-	0	-
#Deleted in new
chr12	107860417	107860501	ENSG00000257398.6|AC126177.4|lncRNA|chr12:107860417:107860501:-	0	-
#Deleted in new
chr12	107863725	107863967	ENSG00000257398.6|AC126177.4|lncRNA|chr12:107863725:107863967:-	0	-
#Deleted in new
chr12	107864441	107864562	ENSG00000257398.6|AC126177.4|lncRNA|chr12:107864441:107864562:-	0	-
#Deleted in new
chr12	108129470	108129926	ENSG00000075035.9|WSCD2|pc|chr12:108129470:108129926:+	0	+
#Deleted in new
chr12	108129589	108129926	ENSG00000075035.9|WSCD2|pc|chr12:108129589:108129926:+	0	+
#Deleted in new
chr12	108129602	108129926	ENSG00000075035.9|WSCD2|pc|chr12:108129602:108129926:+	0	+
#Deleted in new
chr12	108129668	108129926	ENSG00000075035.9|WSCD2|pc|chr12:108129668:108129926:+	0	+
#Deleted in new
chr12	108129805	108129926	ENSG00000075035.9|WSCD2|pc|chr12:108129805:108129926:+	0	+
#Deleted in new
chr12	108149825	108149906	ENSG00000075035.9|WSCD2|pc|chr12:108149825:108149906:+	0	+
#Deleted in new
chr12	108171673	108171834	ENSG00000075035.9|WSCD2|pc|chr12:108171673:108171834:+	0	+
#Deleted in new
chr12	108189345	108189767	ENSG00000075035.9|WSCD2|pc|chr12:108189345:108189767:+	0	+
#Deleted in new
chr12	108196299	108196435	ENSG00000075035.9|WSCD2|pc|chr12:108196299:108196435:+	0	+
#Deleted in new
chr12	108293588	108293664	ENSG00000174600.13|CMKLR1|pc|chr12:108293588:108293664:-	0	-
#Deleted in new
chr12	108320544	108320662	ENSG00000174600.13|CMKLR1|pc|chr12:108320544:108320662:-	0	-
#Deleted in new
chr12	108434129	108434293	ENSG00000247213.6|LINC01498|lncRNA|chr12:108434129:108434293:-	0	-
#Deleted in new
chr12	108438799	108438899	ENSG00000247213.6|LINC01498|lncRNA|chr12:108438799:108438899:-	0	-
#Deleted in new
chr12	108443274	108443317	ENSG00000247213.6|LINC01498|lncRNA|chr12:108443274:108443317:-	0	-
#Deleted in new
chr12	108447441	108447520	ENSG00000247213.6|LINC01498|lncRNA|chr12:108447441:108447520:-	0	-
#Deleted in new
chr12	108448385	108448496	ENSG00000247213.6|LINC01498|lncRNA|chr12:108448385:108448496:-	0	-
#Deleted in new
chr12	108448757	108448886	ENSG00000247213.6|LINC01498|lncRNA|chr12:108448757:108448886:-	0	-
#Deleted in new
chr12	108457795	108457932	ENSG00000247213.6|LINC01498|lncRNA|chr12:108457795:108457932:-	0	-
#Deleted in new
chr12	108459180	108459303	ENSG00000247213.6|LINC01498|lncRNA|chr12:108459180:108459303:-	0	-
#Deleted in new
chr12	108459424	108459584	ENSG00000247213.6|LINC01498|lncRNA|chr12:108459424:108459584:-	0	-
#Deleted in new
chr12	108459444	108459584	ENSG00000247213.6|LINC01498|lncRNA|chr12:108459444:108459584:-	0	-
#Deleted in new
chr12	108461629	108461694	ENSG00000247213.6|LINC01498|lncRNA|chr12:108461629:108461694:-	0	-
#Deleted in new
chr12	108464261	108464446	ENSG00000247213.6|LINC01498|lncRNA|chr12:108464261:108464446:-	0	-
#Deleted in new
chr12	108472008	108472103	ENSG00000247213.6|LINC01498|lncRNA|chr12:108472008:108472103:-	0	-
#Deleted in new
chr12	108479538	108480528	ENSG00000247213.6|LINC01498|lncRNA|chr12:108479538:108480528:-	0	-
#Deleted in new
chr12	108486172	108486242	ENSG00000247213.6|LINC01498|lncRNA|chr12:108486172:108486242:-	0	-
#Deleted in new
chr12	108492449	108492585	ENSG00000247213.6|LINC01498|lncRNA|chr12:108492449:108492585:-	0	-
#Partially deleted in new
chr12	108515315	108515361	ENSG00000198855.6|FICD|pc|chr12:108515315:108515361:+	0	+
#Deleted in new
chr12	108524658	108524867	ENSG00000198855.6|FICD|pc|chr12:108524658:108524867:+	0	+
#Deleted in new
chr12	108549299	108549328	ENSG00000075856.11|SART3|pc|chr12:108549299:108549328:-	0	-
#Deleted in new
chr12	108554067	108554198	ENSG00000075856.11|SART3|pc|chr12:108554067:108554198:-	0	-
#Partially deleted in new
chr12	108567189	108567566	ENSG00000136003.15|ISCU|pc|chr12:108567189:108567566:+	0	+
#Partially deleted in new
chr12	108567189	108567908	ENSG00000136003.15|ISCU|pc|chr12:108567189:108567908:+	0	+
#Deleted in new
chr12	108567657	108567743	ENSG00000136003.15|ISCU|pc|chr12:108567657:108567743:+	0	+
#Deleted in new
chr12	108567657	108567757	ENSG00000136003.15|ISCU|pc|chr12:108567657:108567757:+	0	+
#Partially deleted in new
chr12	108567657	108568547	ENSG00000136003.15|ISCU|pc|chr12:108567657:108568547:+	0	+
#Deleted in new
chr12	108567733	108567757	ENSG00000136003.15|ISCU|pc|chr12:108567733:108567757:+	0	+
#Deleted in new
chr12	108567857	108568016	ENSG00000136003.15|ISCU|pc|chr12:108567857:108568016:+	0	+
#Deleted in new
chr12	108567919	108568016	ENSG00000136003.15|ISCU|pc|chr12:108567919:108568016:+	0	+
#Partially deleted in new
chr12	108594163	108594545	ENSG00000183160.8|TMEM119|pc|chr12:108594163:108594545:-	0	-
#Deleted in new
chr12	108594336	108594545	ENSG00000183160.8|TMEM119|pc|chr12:108594336:108594545:-	0	-
#Deleted in new
chr12	108628686	108628749	ENSG00000257221.3|AC007569.1|lncRNA|chr12:108628686:108628749:+	0	+
#Deleted in new
chr12	108631858	108632078	ENSG00000110876.9|SELPLG|pc|chr12:108631858:108632078:-	0	-
#Deleted in new
chr12	108634330	108634422	ENSG00000257221.3|AC007569.1|lncRNA|chr12:108634330:108634422:+	0	+
#Deleted in new
chr12	108635848	108636046	ENSG00000257221.3|AC007569.1|lncRNA|chr12:108635848:108636046:+	0	+
#Deleted in new
chr12	108640873	108640917	ENSG00000257221.3|AC007569.1|lncRNA|chr12:108640873:108640917:+	0	+
#Deleted in new
chr12	108640873	108641318	ENSG00000257221.3|AC007569.1|lncRNA|chr12:108640873:108641318:+	0	+
#Partially deleted in new
chr12	108648962	108649671	ENSG00000110880.10|CORO1C|pc|chr12:108648962:108649671:-	0	-
#Deleted in new
chr12	108653037	108653060	ENSG00000110880.10|CORO1C|pc|chr12:108653037:108653060:-	0	-
#Partially deleted in new
chr12	108730561	108730669	ENSG00000110880.10|CORO1C|pc|chr12:108730561:108730669:-	0	-
#Partially deleted in new
chr12	108778911	108779166	ENSG00000280110.1|AC087893.2|lncRNA|chr12:108778911:108779166:+	0	+
#Deleted in new
chr12	108858931	108859035	ENSG00000110887.7|DAO|pc|chr12:108858931:108859035:+	0	+
#Deleted in new
chr12	108876669	108876913	ENSG00000110887.7|DAO|pc|chr12:108876669:108876913:+	0	+
#Deleted in new
chr12	10891460	10891925	ENSG00000231887.6|PRH1|pc|chr12:10891460:10891925:-	0	-
#Partially deleted in new
chr12	108936960	108937337	ENSG00000166111.9|SVOP|pc|chr12:108936960:108937337:-	0	-
#Deleted in new
chr12	109023088	109023167	ENSG00000135093.12|USP30|pc|chr12:109023088:109023167:+	0	+
#Deleted in new
chr12	109024802	109025072	ENSG00000135093.12|USP30|pc|chr12:109024802:109025072:+	0	+
#Deleted in new
chr12	109027464	109027556	ENSG00000135093.12|USP30|pc|chr12:109027464:109027556:+	0	+
#Deleted in new
chr12	109047589	109047714	ENSG00000135093.12|USP30|pc|chr12:109047589:109047714:+	0	+
#Partially deleted in new
chr12	109053685	109053952	ENSG00000256262.1|USP30-AS1|lncRNA|chr12:109053685:109053952:-	0	-
#Deleted in new
chr12	109053872	109054042	ENSG00000135093.12|USP30|pc|chr12:109053872:109054042:+	0	+
#Deleted in new
chr12	109054679	109054792	ENSG00000135093.12|USP30|pc|chr12:109054679:109054792:+	0	+
#Partially deleted in new
chr12	109092506	109093472	ENSG00000189046.10|ALKBH2|pc|chr12:109092506:109093472:-	0	-
#Deleted in new
chr12	109093246	109093459	ENSG00000189046.10|ALKBH2|pc|chr12:109093246:109093459:-	0	-
#Deleted in new
chr12	109093246	109093472	ENSG00000189046.10|ALKBH2|pc|chr12:109093246:109093472:-	0	-
#Deleted in new
chr12	109093246	109093631	ENSG00000189046.10|ALKBH2|pc|chr12:109093246:109093631:-	0	-
#Deleted in new
chr12	109093349	109093469	ENSG00000189046.10|ALKBH2|pc|chr12:109093349:109093469:-	0	-
#Deleted in new
chr12	109093349	109093488	ENSG00000189046.10|ALKBH2|pc|chr12:109093349:109093488:-	0	-
#Deleted in new
chr12	109105095	109105215	ENSG00000076248.10|UNG|pc|chr12:109105095:109105215:+	0	+
#Deleted in new
chr12	109113094	109113415	ENSG00000256139.2|AC007637.1|lncRNA|chr12:109113094:109113415:+	0	+
#Deleted in new
chr12	109125260	109125594	ENSG00000256139.2|AC007637.1|lncRNA|chr12:109125260:109125594:+	0	+
#Partially deleted in new
chr12	109235605	109236377	ENSG00000076555.15|ACACB|pc|chr12:109235605:109236377:+	0	+
#Partially deleted in new
chr12	109260064	109260147	ENSG00000076555.15|ACACB|pc|chr12:109260064:109260147:+	0	+
#Partially deleted in new
chr12	109260064	109260149	ENSG00000076555.15|ACACB|pc|chr12:109260064:109260149:+	0	+
#Deleted in new
chr12	109354082	109354435	ENSG00000256560.1|LINC01486|lncRNA|chr12:109354082:109354435:-	0	-
#Deleted in new
chr12	109357131	109357266	ENSG00000256560.1|LINC01486|lncRNA|chr12:109357131:109357266:-	0	-
#Partially deleted in new
chr12	109447158	109448371	ENSG00000174527.9|MYO1H|pc|chr12:109447158:109448371:+	0	+
#Deleted in new
chr12	109455467	109455523	ENSG00000174527.9|MYO1H|pc|chr12:109455467:109455523:+	0	+
#Partially deleted in new
chr12	109457991	109458985	ENSG00000110906.12|KCTD10|pc|chr12:109457991:109458985:-	0	-
#Deleted in new
chr12	109458848	109458871	ENSG00000110906.12|KCTD10|pc|chr12:109458848:109458871:-	0	-
#Deleted in new
chr12	109458924	109458982	ENSG00000110906.12|KCTD10|pc|chr12:109458924:109458982:-	0	-
#Deleted in new
chr12	109460347	109460395	ENSG00000110906.12|KCTD10|pc|chr12:109460347:109460395:-	0	-
#Deleted in new
chr12	109517916	109518013	ENSG00000151148.13|UBE3B|pc|chr12:109517916:109518013:+	0	+
#Deleted in new
chr12	109567010	109567167	ENSG00000139428.11|MMAB|pc|chr12:109567010:109567167:-	0	-
#Partially deleted in new
chr12	109567817	109568863	ENSG00000139428.11|MMAB|pc|chr12:109567817:109568863:-	0	-
#Deleted in new
chr12	109569971	109570094	ENSG00000139428.11|MMAB|pc|chr12:109569971:109570094:-	0	-
#Deleted in new
chr12	109579164	109579282	ENSG00000110921.13|MVK|pc|chr12:109579164:109579282:+	0	+
#Deleted in new
chr12	109579164	109579289	ENSG00000110921.13|MVK|pc|chr12:109579164:109579289:+	0	+
#Deleted in new
chr12	10973283	10973721	ENSG00000111215.11|PRR4|pc|chr12:10973283:10973721:-	0	-
#Deleted in new
chr12	10973654	10973706	ENSG00000111215.11|PRR4|pc|chr12:10973654:10973706:-	0	-
#Deleted in new
chr12	10973654	10973721	ENSG00000111215.11|PRR4|pc|chr12:10973654:10973721:-	0	-
#Deleted in new
chr12	10973654	10973721	ENSG00000212127.5|TAS2R14|pc|chr12:10973654:10973721:-	0	-
#Deleted in new
chr12	10973654	10973721	ENSG00000231887.6|PRH1|pc|chr12:10973654:10973721:-	0	-
#Deleted in new
chr12	10973654	10973721	ENSG00000275778.1|AC018630.6|pc|chr12:10973654:10973721:-	0	-
#Deleted in new
chr12	109742104	109742165	ENSG00000255650.5|FAM222A-AS1|lncRNA|chr12:109742104:109742165:-	0	-
#Deleted in new
chr12	109773296	109773484	ENSG00000255650.5|FAM222A-AS1|lncRNA|chr12:109773296:109773484:-	0	-
#Deleted in new
chr12	109773296	109773508	ENSG00000255650.5|FAM222A-AS1|lncRNA|chr12:109773296:109773508:-	0	-
#Deleted in new
chr12	109900517	109900731	ENSG00000139437.17|TCHP|pc|chr12:109900517:109900731:+	0	+
#Deleted in new
chr12	109900608	109901059	ENSG00000139437.17|TCHP|pc|chr12:109900608:109901059:+	0	+
#Deleted in new
chr12	109965759	109965765	ENSG00000139436.20|GIT2|pc|chr12:109965759:109965765:-	0	-
#Deleted in new
chr12	110032244	110032803	ENSG00000277595.1|AC007546.1|lncRNA|chr12:110032244:110032803:+	0	+
#Deleted in new
chr12	110044419	110044533	ENSG00000174456.13|C12orf76|pc|chr12:110044419:110044533:-	0	-
#Deleted in new
chr12	110049056	110049285	ENSG00000174456.13|C12orf76|pc|chr12:110049056:110049285:-	0	-
#Partially deleted in new
chr12	110049359	110051298	ENSG00000174456.13|C12orf76|pc|chr12:110049359:110051298:-	0	-
#Deleted in new
chr12	110058987	110059163	ENSG00000174456.13|C12orf76|pc|chr12:110058987:110059163:-	0	-
#Deleted in new
chr12	110058987	110059178	ENSG00000174456.13|C12orf76|pc|chr12:110058987:110059178:-	0	-
#Deleted in new
chr12	11005933	11006269	ENSG00000111215.11|PRR4|pc|chr12:11005933:11006269:-	0	-
#Deleted in new
chr12	110067489	110067695	ENSG00000174456.13|C12orf76|pc|chr12:110067489:110067695:-	0	-
#Deleted in new
chr12	110162357	110162479	ENSG00000122970.15|IFT81|pc|chr12:110162357:110162479:+	0	+
#Deleted in new
chr12	110167870	110169182	ENSG00000122970.15|IFT81|pc|chr12:110167870:110169182:+	0	+
#Deleted in new
chr12	110216536	110216605	ENSG00000122970.15|IFT81|pc|chr12:110216536:110216605:+	0	+
#Deleted in new
chr12	110216707	110216833	ENSG00000122970.15|IFT81|pc|chr12:110216707:110216833:+	0	+
#Deleted in new
chr12	110295990	110296314	ENSG00000174437.16|ATP2A2|pc|chr12:110295990:110296314:+	0	+
#Partially deleted in new
chr12	110329398	110332685	ENSG00000174437.16|ATP2A2|pc|chr12:110329398:110332685:+	0	+
#Deleted in new
chr12	110331971	110332143	ENSG00000174437.16|ATP2A2|pc|chr12:110331971:110332143:+	0	+
#Deleted in new
chr12	11034781	11034885	ENSG00000212127.5|TAS2R14|pc|chr12:11034781:11034885:-	0	-
#Deleted in new
chr12	11034781	11034885	ENSG00000275778.1|AC018630.6|pc|chr12:11034781:11034885:-	0	-
#Partially deleted in new
chr12	110372899	110374333	ENSG00000196510.12|ANAPC7|pc|chr12:110372899:110374333:-	0	-
#Deleted in new
chr12	110377704	110378014	ENSG00000196510.12|ANAPC7|pc|chr12:110377704:110378014:-	0	-
#Deleted in new
chr12	110378547	110379151	ENSG00000196510.12|ANAPC7|pc|chr12:110378547:110379151:-	0	-
#Partially deleted in new
chr12	110386326	110387277	ENSG00000196510.12|ANAPC7|pc|chr12:110386326:110387277:-	0	-
#Partially deleted in new
chr12	110444882	110445551	ENSG00000111229.15|ARPC3|pc|chr12:110444882:110445551:-	0	-
#Deleted in new
chr12	110445068	110445243	ENSG00000111229.15|ARPC3|pc|chr12:110445068:110445243:-	0	-
#Deleted in new
chr12	11047012	11047188	ENSG00000111215.11|PRR4|pc|chr12:11047012:11047188:-	0	-
#Deleted in new
chr12	11047019	11047041	ENSG00000231887.6|PRH1|pc|chr12:11047019:11047041:-	0	-
#Deleted in new
chr12	11047019	11047114	ENSG00000111215.11|PRR4|pc|chr12:11047019:11047114:-	0	-
#Deleted in new
chr12	11047019	11047137	ENSG00000111215.11|PRR4|pc|chr12:11047019:11047137:-	0	-
#Deleted in new
chr12	11047019	11047188	ENSG00000111215.11|PRR4|pc|chr12:11047019:11047188:-	0	-
#Deleted in new
chr12	11047019	11047188	ENSG00000212127.5|TAS2R14|pc|chr12:11047019:11047188:-	0	-
#Deleted in new
chr12	11047019	11047188	ENSG00000231887.6|PRH1|pc|chr12:11047019:11047188:-	0	-
#Deleted in new
chr12	11047019	11047188	ENSG00000275778.1|AC018630.6|pc|chr12:11047019:11047188:-	0	-
#Deleted in new
chr12	11047019	11047190	ENSG00000231887.6|PRH1|pc|chr12:11047019:11047190:-	0	-
#Deleted in new
chr12	110501416	110501503	ENSG00000111237.18|VPS29|pc|chr12:110501416:110501503:-	0	-
#Deleted in new
chr12	110501416	110501559	ENSG00000111237.18|VPS29|pc|chr12:110501416:110501559:-	0	-
#Deleted in new
chr12	110501654	110501730	ENSG00000151164.18|RAD9B|pc|chr12:110501654:110501730:+	0	+
#Deleted in new
chr12	110511427	110511494	ENSG00000151164.18|RAD9B|pc|chr12:110511427:110511494:+	0	+
#Deleted in new
chr12	110511427	110511583	ENSG00000151164.18|RAD9B|pc|chr12:110511427:110511583:+	0	+
#Deleted in new
chr12	110616276	110616352	ENSG00000204852.15|TCTN1|pc|chr12:110616276:110616352:+	0	+
#Deleted in new
chr12	110616312	110616352	ENSG00000204852.15|TCTN1|pc|chr12:110616312:110616352:+	0	+
#Partially deleted in new
chr12	110628766	110630095	ENSG00000204852.15|TCTN1|pc|chr12:110628766:110630095:+	0	+
#Partially deleted in new
chr12	110628766	110630287	ENSG00000204852.15|TCTN1|pc|chr12:110628766:110630287:+	0	+
#Deleted in new
chr1	211063391	211063737	ENSG00000143473.12|KCNH1|pc|chr1:211063391:211063737:-	0	-
#Deleted in new
chr12	110634395	110634463	ENSG00000204852.15|TCTN1|pc|chr12:110634395:110634463:+	0	+
#Partially deleted in new
chr12	110682654	110683264	ENSG00000122986.13|HVCN1|pc|chr12:110682654:110683264:-	0	-
#Deleted in new
chr12	110689079	110689157	ENSG00000122986.13|HVCN1|pc|chr12:110689079:110689157:-	0	-
#Deleted in new
chr12	110689311	110689417	ENSG00000122986.13|HVCN1|pc|chr12:110689311:110689417:-	0	-
#Deleted in new
chr12	110689725	110689778	ENSG00000122986.13|HVCN1|pc|chr12:110689725:110689778:-	0	-
#Deleted in new
chr12	110689725	110689809	ENSG00000122986.13|HVCN1|pc|chr12:110689725:110689809:-	0	-
#Deleted in new
chr12	110689725	110689819	ENSG00000122986.13|HVCN1|pc|chr12:110689725:110689819:-	0	-
#Deleted in new
chr12	110702308	110702433	ENSG00000122986.13|HVCN1|pc|chr12:110702308:110702433:-	0	-
#Deleted in new
chr12	110704874	110704950	ENSG00000122986.13|HVCN1|pc|chr12:110704874:110704950:-	0	-
#Partially deleted in new
chr12	110724659	110726679	ENSG00000186298.11|PPP1CC|pc|chr12:110724659:110726679:-	0	-
#Partially deleted in new
chr12	110731769	110732983	ENSG00000186298.11|PPP1CC|pc|chr12:110731769:110732983:-	0	-
#Deleted in new
chr12	110734717	110734986	ENSG00000186298.11|PPP1CC|pc|chr12:110734717:110734986:-	0	-
#Deleted in new
chr12	110831778	110831994	ENSG00000257268.1|AC002375.1|lncRNA|chr12:110831778:110831994:+	0	+
#Partially deleted in new
chr12	110845598	110845963	ENSG00000257268.1|AC002375.1|lncRNA|chr12:110845598:110845963:+	0	+
#Deleted in new
chr12	110846768	110847105	ENSG00000173093.12|CCDC63|pc|chr12:110846768:110847105:+	0	+
#Deleted in new
chr12	110846959	110847105	ENSG00000173093.12|CCDC63|pc|chr12:110846959:110847105:+	0	+
#Deleted in new
chr12	110847026	110847105	ENSG00000173093.12|CCDC63|pc|chr12:110847026:110847105:+	0	+
#Partially deleted in new
chr12	110918828	110919193	ENSG00000111245.14|MYL2|pc|chr12:110918828:110919193:-	0	-
#Deleted in new
chr12	110936584	110936698	ENSG00000185847.7|LINC01405|lncRNA|chr12:110936584:110936698:+	0	+
#Deleted in new
chr12	110936588	110936698	ENSG00000185847.7|LINC01405|lncRNA|chr12:110936588:110936698:+	0	+
#Deleted in new
chr12	110936601	110936698	ENSG00000185847.7|LINC01405|lncRNA|chr12:110936601:110936698:+	0	+
#Deleted in new
chr12	110936606	110936698	ENSG00000185847.7|LINC01405|lncRNA|chr12:110936606:110936698:+	0	+
#Deleted in new
chr12	110937184	110937451	ENSG00000185847.7|LINC01405|lncRNA|chr12:110937184:110937451:+	0	+
#Deleted in new
chr12	110938289	110938512	ENSG00000185847.7|LINC01405|lncRNA|chr12:110938289:110938512:+	0	+
#Deleted in new
chr12	110943323	110943695	ENSG00000185847.7|LINC01405|lncRNA|chr12:110943323:110943695:+	0	+
#Deleted in new
chr12	110951682	110951842	ENSG00000258240.5|AC002351.1|lncRNA|chr12:110951682:110951842:-	0	-
#Deleted in new
chr12	110951710	110951842	ENSG00000258240.5|AC002351.1|lncRNA|chr12:110951710:110951842:-	0	-
#Deleted in new
chr12	110956238	110956336	ENSG00000258240.5|AC002351.1|lncRNA|chr12:110956238:110956336:-	0	-
#Deleted in new
chr12	110956238	110956340	ENSG00000258240.5|AC002351.1|lncRNA|chr12:110956238:110956340:-	0	-
#Deleted in new
chr12	110956473	110956832	ENSG00000185847.7|LINC01405|lncRNA|chr12:110956473:110956832:+	0	+
#Deleted in new
chr12	110957391	110957480	ENSG00000258240.5|AC002351.1|lncRNA|chr12:110957391:110957480:-	0	-
#Deleted in new
chr12	110957569	110957811	ENSG00000258240.5|AC002351.1|lncRNA|chr12:110957569:110957811:-	0	-
#Deleted in new
chr12	110957569	110957812	ENSG00000258240.5|AC002351.1|lncRNA|chr12:110957569:110957812:-	0	-
#Deleted in new
chr12	110958021	110958208	ENSG00000185847.7|LINC01405|lncRNA|chr12:110958021:110958208:+	0	+
#Deleted in new
chr1	21111322	21111383	ENSG00000075151.20|EIF4G3|pc|chr1:21111322:21111383:-	0	-
#Deleted in new
chr1	21111322	21111610	ENSG00000075151.20|EIF4G3|pc|chr1:21111322:21111610:-	0	-
#Deleted in new
chr12	11120835	11121180	ENSG00000111215.11|PRR4|pc|chr12:11120835:11121180:-	0	-
#Deleted in new
chr12	11121009	11121180	ENSG00000111215.11|PRR4|pc|chr12:11121009:11121180:-	0	-
#Deleted in new
chr12	111365563	111365651	ENSG00000198324.13|FAM109A|pc|chr12:111365563:111365651:-	0	-
#Deleted in new
chr12	111369281	111369320	ENSG00000257595.2|LINC02356|lncRNA|chr12:111369281:111369320:+	0	+
#Deleted in new
chr12	111371968	111372070	ENSG00000257595.2|LINC02356|lncRNA|chr12:111371968:111372070:+	0	+
#Deleted in new
chr12	111396834	111396873	ENSG00000257595.2|LINC02356|lncRNA|chr12:111396834:111396873:+	0	+
#Deleted in new
chr12	111434861	111435027	ENSG00000111252.10|SH2B3|pc|chr12:111434861:111435027:+	0	+
#Deleted in new
chr12	111444738	111444848	ENSG00000111252.10|SH2B3|pc|chr12:111444738:111444848:+	0	+
#Partially deleted in new
chr12	111470557	111471945	ENSG00000204842.14|ATXN2|pc|chr12:111470557:111471945:-	0	-
#Deleted in new
chr12	111482786	111482831	ENSG00000204842.14|ATXN2|pc|chr12:111482786:111482831:-	0	-
#Partially deleted in new
chr12	111512472	111513539	ENSG00000204842.14|ATXN2|pc|chr12:111512472:111513539:-	0	-
#Deleted in new
chr12	111618	111850	ENSG00000256948.1|AC026369.3|lncRNA|chr12:111618:111850:-	0	-
#Deleted in new
chr1	2111653	2111817	ENSG00000067606.16|PRKCZ|pc|chr1:2111653:2111817:+	0	+
#Deleted in new
chr12	11166089	11166387	ENSG00000256712.1|AC134349.1|lncRNA|chr12:11166089:11166387:-	0	-
#Deleted in new
chr1	211167998	211169658	ENSG00000284376.1|AC092017.4|lncRNA|chr1:211167998:211169658:-	0	-
#Partially deleted in new
chr12	111686055	111686239	ENSG00000111271.14|ACAD10|pc|chr12:111686055:111686239:+	0	+
#Partially deleted in new
chr12	111686063	111686239	ENSG00000111271.14|ACAD10|pc|chr12:111686063:111686239:+	0	+
#Partially deleted in new
chr12	111686067	111686239	ENSG00000111271.14|ACAD10|pc|chr12:111686067:111686239:+	0	+
#Partially deleted in new
chr12	111686070	111686239	ENSG00000111271.14|ACAD10|pc|chr12:111686070:111686239:+	0	+
#Partially deleted in new
chr12	111686075	111686239	ENSG00000111271.14|ACAD10|pc|chr12:111686075:111686239:+	0	+
#Partially deleted in new
chr12	111686076	111686239	ENSG00000111271.14|ACAD10|pc|chr12:111686076:111686239:+	0	+
#Partially deleted in new
chr12	111686080	111686239	ENSG00000111271.14|ACAD10|pc|chr12:111686080:111686239:+	0	+
#Partially deleted in new
chr12	111686081	111686239	ENSG00000111271.14|ACAD10|pc|chr12:111686081:111686239:+	0	+
#Partially deleted in new
chr12	111686097	111686239	ENSG00000111271.14|ACAD10|pc|chr12:111686097:111686239:+	0	+
#Deleted in new
chr12	111688057	111688218	ENSG00000111271.14|ACAD10|pc|chr12:111688057:111688218:+	0	+
#Deleted in new
chr12	111690451	111690553	ENSG00000111271.14|ACAD10|pc|chr12:111690451:111690553:+	0	+
#Deleted in new
chr12	111691058	111691168	ENSG00000111271.14|ACAD10|pc|chr12:111691058:111691168:+	0	+
#Deleted in new
chr12	111710272	111710365	ENSG00000111271.14|ACAD10|pc|chr12:111710272:111710365:+	0	+
#Deleted in new
chr1	211172146	211172275	ENSG00000284376.1|AC092017.4|lncRNA|chr1:211172146:211172275:-	0	-
#Deleted in new
chr1	211172169	211172275	ENSG00000284376.1|AC092017.4|lncRNA|chr1:211172169:211172275:-	0	-
#Deleted in new
chr12	111747587	111747725	ENSG00000111271.14|ACAD10|pc|chr12:111747587:111747725:+	0	+
#Deleted in new
chr1	211175088	211175173	ENSG00000284376.1|AC092017.4|lncRNA|chr1:211175088:211175173:-	0	-
#Deleted in new
chr1	211175088	211175253	ENSG00000284376.1|AC092017.4|lncRNA|chr1:211175088:211175253:-	0	-
#Partially deleted in new
chr12	111752729	111753915	ENSG00000111271.14|ACAD10|pc|chr12:111752729:111753915:+	0	+
#Deleted in new
chr12	111775604	111775720	ENSG00000111275.12|ALDH2|pc|chr12:111775604:111775720:+	0	+
#Partially deleted in new
chr12	111809542	111817529	ENSG00000111275.12|ALDH2|pc|chr12:111809542:111817529:+	0	+
#Partially deleted in new
chr12	111812792	111813151	ENSG00000111275.12|ALDH2|pc|chr12:111812792:111813151:+	0	+
#Deleted in new
chr1	211182156	211182224	ENSG00000283952.1|AC092017.3|pc|chr1:211182156:211182224:-	0	-
#Deleted in new
chr1	211182156	211182224	ENSG00000284376.1|AC092017.4|lncRNA|chr1:211182156:211182224:-	0	-
#Deleted in new
chr1	211183057	211183101	ENSG00000283952.1|AC092017.3|pc|chr1:211183057:211183101:-	0	-
#Deleted in new
chr1	211183057	211183101	ENSG00000284376.1|AC092017.4|lncRNA|chr1:211183057:211183101:-	0	-
#Deleted in new
chr12	111839763	111840477	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111839763:111840477:-	0	-
#Deleted in new
chr12	111839766	111840477	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111839766:111840477:-	0	-
#Deleted in new
chr12	111839767	111840003	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111839767:111840003:-	0	-
#Deleted in new
chr12	111839769	111840003	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111839769:111840003:-	0	-
#Deleted in new
chr12	111839776	111840003	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111839776:111840003:-	0	-
#Deleted in new
chr12	111839806	111840031	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111839806:111840031:-	0	-
#Deleted in new
chr12	111839909	111840042	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111839909:111840042:-	0	-
#Deleted in new
chr12	111840332	111840477	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111840332:111840477:-	0	-
#Deleted in new
chr12	111841326	111841470	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111841326:111841470:-	0	-
#Deleted in new
chr12	111841326	111841706	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111841326:111841706:-	0	-
#Deleted in new
chr12	111841326	111841710	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111841326:111841710:-	0	-
#Deleted in new
chr12	111841683	111841710	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111841683:111841710:-	0	-
#Deleted in new
chr12	111841683	111841902	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111841683:111841902:-	0	-
#Deleted in new
chr12	111841683	111841906	ENSG00000234608.7|MAPKAPK5-AS1|lncRNA|chr12:111841683:111841906:-	0	-
#Deleted in new
chr12	111882789	111882853	ENSG00000089022.13|MAPKAPK5|pc|chr12:111882789:111882853:+	0	+
#Deleted in new
chr1	211188496	211188507	ENSG00000284376.1|AC092017.4|lncRNA|chr1:211188496:211188507:-	0	-
#Deleted in new
chr1	211188496	211188533	ENSG00000283952.1|AC092017.3|pc|chr1:211188496:211188533:-	0	-
#Partially deleted in new
chr12	111887577	111888618	ENSG00000089022.13|MAPKAPK5|pc|chr12:111887577:111888618:+	0	+
#Deleted in new
chr12	111965591	111965759	ENSG00000198270.12|TMEM116|pc|chr12:111965591:111965759:-	0	-
#Deleted in new
chr12	111965594	111965759	ENSG00000198270.12|TMEM116|pc|chr12:111965594:111965759:-	0	-
#Deleted in new
chr12	111978735	111978787	ENSG00000198270.12|TMEM116|pc|chr12:111978735:111978787:-	0	-
#Partially deleted in new
chr12	112010424	112013185	ENSG00000198270.12|TMEM116|pc|chr12:112010424:112013185:-	0	-
#Partially deleted in new
chr12	112014590	112015325	ENSG00000089248.6|ERP29|pc|chr12:112014590:112015325:+	0	+
#Partially deleted in new
chr12	112018803	112019343	ENSG00000089248.6|ERP29|pc|chr12:112018803:112019343:+	0	+
#Partially deleted in new
chr12	112033232	112035405	ENSG00000111300.9|NAA25|pc|chr12:112033232:112035405:-	0	-
#Partially deleted in new
chr12	112039228	112040578	ENSG00000111300.9|NAA25|pc|chr12:112039228:112040578:-	0	-
#Deleted in new
chr12	112063908	112064270	ENSG00000258323.1|AC073575.1|lncRNA|chr12:112063908:112064270:+	0	+
#Deleted in new
chr12	112065521	112065755	ENSG00000258323.1|AC073575.1|lncRNA|chr12:112065521:112065755:+	0	+
#Partially deleted in new
chr12	112090311	112090864	ENSG00000111300.9|NAA25|pc|chr12:112090311:112090864:-	0	-
#Deleted in new
chr12	112097240	112097441	ENSG00000111300.9|NAA25|pc|chr12:112097240:112097441:-	0	-
#Deleted in new
chr12	11212218	11212659	ENSG00000275119.1|AC244131.2|lncRNA|chr12:11212218:11212659:+	0	+
#Partially deleted in new
chr12	112125544	112125618	ENSG00000135148.11|TRAFD1|pc|chr12:112125544:112125618:+	0	+
#Partially deleted in new
chr12	112125544	112126149	ENSG00000135148.11|TRAFD1|pc|chr12:112125544:112126149:+	0	+
#Partially deleted in new
chr12	112125553	112125618	ENSG00000135148.11|TRAFD1|pc|chr12:112125553:112125618:+	0	+
#Partially deleted in new
chr12	112125556	112125618	ENSG00000135148.11|TRAFD1|pc|chr12:112125556:112125618:+	0	+
#Partially deleted in new
chr12	112125559	112125618	ENSG00000135148.11|TRAFD1|pc|chr12:112125559:112125618:+	0	+
#Partially deleted in new
chr12	112125562	112125618	ENSG00000135148.11|TRAFD1|pc|chr12:112125562:112125618:+	0	+
#Deleted in new
chr12	112126084	112126149	ENSG00000135148.11|TRAFD1|pc|chr12:112126084:112126149:+	0	+
#Deleted in new
chr12	112133139	112133320	ENSG00000135148.11|TRAFD1|pc|chr12:112133139:112133320:+	0	+
#Deleted in new
chr12	112140118	112140205	ENSG00000135148.11|TRAFD1|pc|chr12:112140118:112140205:+	0	+
#Partially deleted in new
chr12	112166180	112167538	ENSG00000173064.12|HECTD4|pc|chr12:112166180:112167538:-	0	-
#Deleted in new
chr12	112201126	112201438	ENSG00000173064.12|HECTD4|pc|chr12:112201126:112201438:-	0	-
#Partially deleted in new
chr12	112202962	112203772	ENSG00000173064.12|HECTD4|pc|chr12:112202962:112203772:-	0	-
#Deleted in new
chr12	112256799	112256853	ENSG00000257494.1|AC004217.2|lncRNA|chr12:112256799:112256853:+	0	+
#Deleted in new
chr12	112410319	112410370	ENSG00000089009.15|RPL6|pc|chr12:112410319:112410370:-	0	-
#Deleted in new
chr12	112410319	112410405	ENSG00000089009.15|RPL6|pc|chr12:112410319:112410405:-	0	-
#Deleted in new
chr12	112411300	112411442	ENSG00000089009.15|RPL6|pc|chr12:112411300:112411442:-	0	-
#Deleted in new
chr12	112418350	112418404	ENSG00000179295.17|PTPN11|pc|chr12:112418350:112418404:+	0	+
#Partially deleted in new
chr12	112418727	112418838	ENSG00000089009.15|RPL6|pc|chr12:112418727:112418838:-	0	-
#Deleted in new
chr12	112454793	112454799	ENSG00000179295.17|PTPN11|pc|chr12:112454793:112454799:+	0	+
#Deleted in new
chr12	112457290	112457486	ENSG00000179295.17|PTPN11|pc|chr12:112457290:112457486:+	0	+
#Deleted in new
chr12	11251318	11251389	ENSG00000275119.1|AC244131.2|lncRNA|chr12:11251318:11251389:+	0	+
#Deleted in new
chr12	112570379	112570544	ENSG00000089169.14|RPH3A|pc|chr12:112570379:112570544:+	0	+
#Deleted in new
chr12	112570425	112570544	ENSG00000089169.14|RPH3A|pc|chr12:112570425:112570544:+	0	+
#Deleted in new
chr12	112575026	112575064	ENSG00000089169.14|RPH3A|pc|chr12:112575026:112575064:+	0	+
#Deleted in new
chr12	112575096	112575319	ENSG00000089169.14|RPH3A|pc|chr12:112575096:112575319:+	0	+
#Deleted in new
chr12	112575142	112575319	ENSG00000089169.14|RPH3A|pc|chr12:112575142:112575319:+	0	+
#Deleted in new
chr12	112575232	112575319	ENSG00000089169.14|RPH3A|pc|chr12:112575232:112575319:+	0	+
#Deleted in new
chr12	112575237	112575315	ENSG00000089169.14|RPH3A|pc|chr12:112575237:112575315:+	0	+
#Deleted in new
chr12	112575264	112575319	ENSG00000089169.14|RPH3A|pc|chr12:112575264:112575319:+	0	+
#Deleted in new
chr12	112591559	112591600	ENSG00000089169.14|RPH3A|pc|chr12:112591559:112591600:+	0	+
#Deleted in new
chr12	112617724	112617842	ENSG00000089169.14|RPH3A|pc|chr12:112617724:112617842:+	0	+
#Deleted in new
chr12	112649413	112649463	ENSG00000089169.14|RPH3A|pc|chr12:112649413:112649463:+	0	+
#Deleted in new
chr12	112650754	112650871	ENSG00000089169.14|RPH3A|pc|chr12:112650754:112650871:+	0	+
#Deleted in new
chr12	112651766	112651827	ENSG00000089169.14|RPH3A|pc|chr12:112651766:112651827:+	0	+
#Deleted in new
chr12	112718005	112718087	ENSG00000089169.14|RPH3A|pc|chr12:112718005:112718087:+	0	+
#Deleted in new
chr12	112813321	112813385	ENSG00000089169.14|RPH3A|pc|chr12:112813321:112813385:+	0	+
#Deleted in new
chr12	112831744	112831853	ENSG00000089169.14|RPH3A|pc|chr12:112831744:112831853:+	0	+
#Deleted in new
chr12	112873869	112874158	ENSG00000089169.14|RPH3A|pc|chr12:112873869:112874158:+	0	+
#Deleted in new
chr12	112874784	112874957	ENSG00000089169.14|RPH3A|pc|chr12:112874784:112874957:+	0	+
#Partially deleted in new
chr12	112892867	112894659	ENSG00000089169.14|RPH3A|pc|chr12:112892867:112894659:+	0	+
#Deleted in new
chr12	112907627	112907757	ENSG00000257452.1|AC004551.1|lncRNA|chr12:112907627:112907757:-	0	-
#Deleted in new
chr1	211291523	211291599	ENSG00000117625.13|RCOR3|pc|chr1:211291523:211291599:+	0	+
#Deleted in new
chr12	112931877	112932142	ENSG00000089127.12|OAS1|pc|chr12:112931877:112932142:+	0	+
#Deleted in new
chr12	112931877	112933222	ENSG00000089127.12|OAS1|pc|chr12:112931877:112933222:+	0	+
#Partially deleted in new
chr12	112938351	112938707	ENSG00000111331.12|OAS3|pc|chr12:112938351:112938707:+	0	+
#Partially deleted in new
chr12	112969961	112970705	ENSG00000111331.12|OAS3|pc|chr12:112969961:112970705:+	0	+
#Partially deleted in new
chr12	112969961	112973249	ENSG00000111331.12|OAS3|pc|chr12:112969961:112973249:+	0	+
#Partially deleted in new
chr12	112987037	112988805	ENSG00000111335.12|OAS2|pc|chr12:112987037:112988805:+	0	+
#Partially deleted in new
chr12	113009086	113011718	ENSG00000111335.12|OAS2|pc|chr12:113009086:113011718:+	0	+
#Deleted in new
chr12	113017398	113017751	ENSG00000257452.1|AC004551.1|lncRNA|chr12:113017398:113017751:-	0	-
#Deleted in new
chr12	113102935	113103099	ENSG00000111344.11|RASAL1|pc|chr12:113102935:113103099:-	0	-
#Deleted in new
chr12	113103039	113103091	ENSG00000111344.11|RASAL1|pc|chr12:113103039:113103091:-	0	-
#Partially deleted in new
chr12	113107215	113107595	ENSG00000111344.11|RASAL1|pc|chr12:113107215:113107595:-	0	-
#Deleted in new
chr12	113183722	113183802	ENSG00000123064.12|DDX54|pc|chr12:113183722:113183802:-	0	-
#Deleted in new
chr12	113185525	113186021	ENSG00000139405.15|RITA1|pc|chr12:113185525:113186021:+	0	+
#Deleted in new
chr12	113185541	113186021	ENSG00000139405.15|RITA1|pc|chr12:113185541:113186021:+	0	+
#Deleted in new
chr12	113185623	113185802	ENSG00000257286.1|AC089999.2|lncRNA|chr12:113185623:113185802:-	0	-
#Deleted in new
chr12	113186184	113186316	ENSG00000139405.15|RITA1|pc|chr12:113186184:113186316:+	0	+
#Deleted in new
chr12	113186192	113186316	ENSG00000139405.15|RITA1|pc|chr12:113186192:113186316:+	0	+
#Partially deleted in new
chr12	113192092	113192161	ENSG00000257286.1|AC089999.2|lncRNA|chr12:113192092:113192161:-	0	-
#Deleted in new
chr12	113225243	113225336	ENSG00000186815.12|TPCN1|pc|chr12:113225243:113225336:+	0	+
#Deleted in new
chr12	113225245	113225336	ENSG00000186815.12|TPCN1|pc|chr12:113225245:113225336:+	0	+
#Deleted in new
chr12	113249465	113250042	ENSG00000277566.1|AC089999.3|lncRNA|chr12:113249465:113250042:+	0	+
#Deleted in new
chr12	113294105	113294228	ENSG00000186815.12|TPCN1|pc|chr12:113294105:113294228:+	0	+
#Deleted in new
chr12	113302139	113302700	ENSG00000089060.11|SLC8B1|pc|chr12:113302139:113302700:-	0	-
#Partially deleted in new
chr12	113306494	113306844	ENSG00000089060.11|SLC8B1|pc|chr12:113306494:113306844:-	0	-
#Partially deleted in new
chr12	113307690	113308843	ENSG00000089060.11|SLC8B1|pc|chr12:113307690:113308843:-	0	-
#Deleted in new
chr12	113338225	113338494	ENSG00000089060.11|SLC8B1|pc|chr12:113338225:113338494:-	0	-
#Deleted in new
chr12	113353674	113353768	ENSG00000089060.11|SLC8B1|pc|chr12:113353674:113353768:-	0	-
#Deleted in new
chr12	113376788	113377086	ENSG00000151176.7|PLBD2|pc|chr12:113376788:113377086:+	0	+
#Partially deleted in new
chr12	113422452	113422887	ENSG00000139410.14|SDSL|pc|chr12:113422452:113422887:+	0	+
#Deleted in new
chr12	113425663	113425820	ENSG00000135094.10|SDS|pc|chr12:113425663:113425820:-	0	-
#Deleted in new
chr12	113426149	113426301	ENSG00000135094.10|SDS|pc|chr12:113426149:113426301:-	0	-
#Deleted in new
chr12	113427129	113427251	ENSG00000139410.14|SDSL|pc|chr12:113427129:113427251:+	0	+
#Deleted in new
chr12	113679458	113679740	ENSG00000249550.6|LINC01234|lncRNA|chr12:113679458:113679740:-	0	-
#Partially deleted in new
chr12	113706870	113706976	ENSG00000249550.6|LINC01234|lncRNA|chr12:113706870:113706976:-	0	-
#Deleted in new
chr12	113737447	113738012	ENSG00000249550.6|LINC01234|lncRNA|chr12:113737447:113738012:-	0	-
#Deleted in new
chr12	113744576	113746595	ENSG00000249550.6|LINC01234|lncRNA|chr12:113744576:113746595:-	0	-
#Deleted in new
chr12	113745703	113746595	ENSG00000249550.6|LINC01234|lncRNA|chr12:113745703:113746595:-	0	-
#Deleted in new
chr12	113751013	113752188	ENSG00000249550.6|LINC01234|lncRNA|chr12:113751013:113752188:-	0	-
#Deleted in new
chr12	113753430	113753563	ENSG00000249550.6|LINC01234|lncRNA|chr12:113753430:113753563:-	0	-
#Deleted in new
chr12	113767074	113767208	ENSG00000249550.6|LINC01234|lncRNA|chr12:113767074:113767208:-	0	-
#Deleted in new
chr12	113767074	113767209	ENSG00000249550.6|LINC01234|lncRNA|chr12:113767074:113767209:-	0	-
#Deleted in new
chr12	113773614	113773639	ENSG00000249550.6|LINC01234|lncRNA|chr12:113773614:113773639:-	0	-
#Deleted in new
chr12	113773614	113773663	ENSG00000249550.6|LINC01234|lncRNA|chr12:113773614:113773663:-	0	-
#Deleted in new
chr12	113773614	113773681	ENSG00000249550.6|LINC01234|lncRNA|chr12:113773614:113773681:-	0	-
#Deleted in new
chr12	113773614	113773683	ENSG00000249550.6|LINC01234|lncRNA|chr12:113773614:113773683:-	0	-
#Partially deleted in new
chr12	113816741	113818186	ENSG00000122965.10|RBM19|pc|chr12:113816741:113818186:-	0	-
#Deleted in new
chr12	113818102	113818179	ENSG00000122965.10|RBM19|pc|chr12:113818102:113818179:-	0	-
#Deleted in new
chr12	113822053	113822646	ENSG00000122965.10|RBM19|pc|chr12:113822053:113822646:-	0	-
#Partially deleted in new
chr12	113822056	113823321	ENSG00000122965.10|RBM19|pc|chr12:113822056:113823321:-	0	-
#Deleted in new
chr12	113822686	113822807	ENSG00000122965.10|RBM19|pc|chr12:113822686:113822807:-	0	-
#Deleted in new
chr1	211382802	211382925	ENSG00000153363.12|LINC00467|lncRNA|chr1:211382802:211382925:+	0	+
#Deleted in new
chr1	211382819	211382925	ENSG00000153363.12|LINC00467|lncRNA|chr1:211382819:211382925:+	0	+
#Deleted in new
chr1	211382836	211382975	ENSG00000153363.12|LINC00467|lncRNA|chr1:211382836:211382975:+	0	+
#Deleted in new
chr1	211390563	211390670	ENSG00000153363.12|LINC00467|lncRNA|chr1:211390563:211390670:+	0	+
#Deleted in new
chr1	211391615	211391697	ENSG00000153363.12|LINC00467|lncRNA|chr1:211391615:211391697:+	0	+
#Deleted in new
chr1	211391826	211391976	ENSG00000153363.12|LINC00467|lncRNA|chr1:211391826:211391976:+	0	+
#Partially deleted in new
chr12	113932568	113932729	ENSG00000257359.1|AC073863.1|lncRNA|chr12:113932568:113932729:+	0	+
#Deleted in new
chr1	211396766	211396831	ENSG00000153363.12|LINC00467|lncRNA|chr1:211396766:211396831:+	0	+
#Deleted in new
chr1	211398035	211398638	ENSG00000153363.12|LINC00467|lncRNA|chr1:211398035:211398638:+	0	+
#Deleted in new
chr1	211399257	211399437	ENSG00000153363.12|LINC00467|lncRNA|chr1:211399257:211399437:+	0	+
#Deleted in new
chr12	11399380	11399477	ENSG00000255790.5|AC078950.1|lncRNA|chr12:11399380:11399477:-	0	-
#Deleted in new
chr12	11399849	11400003	ENSG00000255790.5|AC078950.1|lncRNA|chr12:11399849:11400003:-	0	-
#Deleted in new
chr12	11401484	11401523	ENSG00000255790.5|AC078950.1|lncRNA|chr12:11401484:11401523:-	0	-
#Deleted in new
chr12	11406697	11406892	ENSG00000255790.5|AC078950.1|lncRNA|chr12:11406697:11406892:-	0	-
#Deleted in new
chr12	114077132	114077357	ENSG00000257603.1|AC010183.1|lncRNA|chr12:114077132:114077357:+	0	+
#Deleted in new
chr12	114079568	114079902	ENSG00000257603.1|AC010183.1|lncRNA|chr12:114079568:114079902:+	0	+
#Deleted in new
chr12	114080380	114080450	ENSG00000257997.5|AC010183.2|lncRNA|chr12:114080380:114080450:+	0	+
#Deleted in new
chr12	114080388	114080450	ENSG00000257997.5|AC010183.2|lncRNA|chr12:114080388:114080450:+	0	+
#Duplicated in new
chr12	114107309	114107399	ENSG00000257997.5|AC010183.2|lncRNA|chr12:114107309:114107399:+	0	+
#Deleted in new
chr12	114110443	114110524	ENSG00000257997.5|AC010183.2|lncRNA|chr12:114110443:114110524:+	0	+
#Deleted in new
chr12	114113340	114113489	ENSG00000257997.5|AC010183.2|lncRNA|chr12:114113340:114113489:+	0	+
#Deleted in new
chr12	114241727	114241770	ENSG00000257476.1|LINC02459|lncRNA|chr12:114241727:114241770:-	0	-
#Deleted in new
chr1	211426210	211426283	ENSG00000153363.12|LINC00467|lncRNA|chr1:211426210:211426283:+	0	+
#Deleted in new
chr1	211432318	211432534	ENSG00000153363.12|LINC00467|lncRNA|chr1:211432318:211432534:+	0	+
#Deleted in new
chr1	211432318	211435333	ENSG00000153363.12|LINC00467|lncRNA|chr1:211432318:211435333:+	0	+
#Deleted in new
chr12	11436302	11436320	ENSG00000255790.5|AC078950.1|lncRNA|chr12:11436302:11436320:-	0	-
#Deleted in new
chr12	114621760	114622011	ENSG00000258254.1|AC010177.1|lncRNA|chr12:114621760:114622011:+	0	+
#Deleted in new
chr12	114713810	114713999	ENSG00000257817.1|AC026765.2|lncRNA|chr12:114713810:114713999:+	0	+
#Deleted in new
chr12	114725276	114725533	ENSG00000257817.1|AC026765.2|lncRNA|chr12:114725276:114725533:+	0	+
#Deleted in new
chr12	114725651	114725746	ENSG00000257817.1|AC026765.2|lncRNA|chr12:114725651:114725746:+	0	+
#Deleted in new
chr12	114748095	114748210	ENSG00000257817.1|AC026765.2|lncRNA|chr12:114748095:114748210:+	0	+
#Deleted in new
chr12	114771536	114771851	ENSG00000257517.1|AC026765.1|lncRNA|chr12:114771536:114771851:+	0	+
#Deleted in new
chr12	11486048	11486151	ENSG00000255790.5|AC078950.1|lncRNA|chr12:11486048:11486151:-	0	-
#Deleted in new
chr12	11486563	11486632	ENSG00000255790.5|AC078950.1|lncRNA|chr12:11486563:11486632:-	0	-
#Deleted in new
chr12	11486563	11486674	ENSG00000255790.5|AC078950.1|lncRNA|chr12:11486563:11486674:-	0	-
#Deleted in new
chr12	11486563	11486678	ENSG00000255790.5|AC078950.1|lncRNA|chr12:11486563:11486678:-	0	-
#Deleted in new
chr12	115077324	115077377	ENSG00000257958.1|AC008125.1|lncRNA|chr12:115077324:115077377:+	0	+
#Deleted in new
chr12	115263169	115263321	ENSG00000257519.1|AC078880.1|lncRNA|chr12:115263169:115263321:+	0	+
#Deleted in new
chr12	115270195	115270596	ENSG00000257519.1|AC078880.1|lncRNA|chr12:115270195:115270596:+	0	+
#Partially deleted in new
chr12	115318656	115320405	ENSG00000276308.1|AC078880.4|lncRNA|chr12:115318656:115320405:-	0	-
#Deleted in new
chr12	115332145	115332566	ENSG00000276972.1|AC078880.5|lncRNA|chr12:115332145:115332566:-	0	-
#Deleted in new
chr12	115363011	115363173	ENSG00000257726.1|AC078880.2|lncRNA|chr12:115363011:115363173:+	0	+
#Deleted in new
chr12	115364064	115364745	ENSG00000257726.1|AC078880.2|lncRNA|chr12:115364064:115364745:+	0	+
#Deleted in new
chr12	11541394	11541526	ENSG00000256237.1|AC007450.1|lncRNA|chr12:11541394:11541526:-	0	-
#Deleted in new
chr12	11548029	11548360	ENSG00000247157.6|LINC01252|lncRNA|chr12:11548029:11548360:+	0	+
#Deleted in new
chr12	11549589	11549721	ENSG00000247157.6|LINC01252|lncRNA|chr12:11549589:11549721:+	0	+
#Deleted in new
chr12	11552579	11552693	ENSG00000247157.6|LINC01252|lncRNA|chr12:11552579:11552693:+	0	+
#Deleted in new
chr12	11555254	11557216	ENSG00000247157.6|LINC01252|lncRNA|chr12:11555254:11557216:+	0	+
#Deleted in new
chr12	11555699	11556084	ENSG00000247157.6|LINC01252|lncRNA|chr12:11555699:11556084:+	0	+
#Deleted in new
chr12	11555782	11555838	ENSG00000256237.1|AC007450.1|lncRNA|chr12:11555782:11555838:-	0	-
#Deleted in new
chr12	11556935	11557052	ENSG00000247157.6|LINC01252|lncRNA|chr12:11556935:11557052:+	0	+
#Deleted in new
chr12	11556965	11557216	ENSG00000247157.6|LINC01252|lncRNA|chr12:11556965:11557216:+	0	+
#Deleted in new
chr12	115575068	115575288	ENSG00000258108.1|AC009803.2|lncRNA|chr12:115575068:115575288:+	0	+
#Deleted in new
chr12	115576675	115577017	ENSG00000258280.1|AC009803.3|lncRNA|chr12:115576675:115577017:+	0	+
#Deleted in new
chr12	115580284	115580359	ENSG00000258108.1|AC009803.2|lncRNA|chr12:115580284:115580359:+	0	+
#Deleted in new
chr12	115581611	115581739	ENSG00000258108.1|AC009803.2|lncRNA|chr12:115581611:115581739:+	0	+
#Deleted in new
chr12	115582060	115582176	ENSG00000257407.1|AC009803.1|lncRNA|chr12:115582060:115582176:-	0	-
#Deleted in new
chr12	115582764	115582965	ENSG00000257407.1|AC009803.1|lncRNA|chr12:115582764:115582965:-	0	-
#Deleted in new
chr12	115582841	115582965	ENSG00000257407.1|AC009803.1|lncRNA|chr12:115582841:115582965:-	0	-
#Deleted in new
chr12	11559290	11559382	ENSG00000247157.6|LINC01252|lncRNA|chr12:11559290:11559382:+	0	+
#Deleted in new
chr12	115597340	115597449	ENSG00000257407.1|AC009803.1|lncRNA|chr12:115597340:115597449:-	0	-
#Deleted in new
chr12	115639644	115639734	ENSG00000257407.1|AC009803.1|lncRNA|chr12:115639644:115639734:-	0	-
#Deleted in new
chr12	115765453	115765616	ENSG00000257781.1|AC009387.1|lncRNA|chr12:115765453:115765616:+	0	+
#Deleted in new
chr12	115832405	115832638	ENSG00000257683.1|LINC02463|lncRNA|chr12:115832405:115832638:-	0	-
#Deleted in new
chr12	11590249	11590369	ENSG00000247157.6|LINC01252|lncRNA|chr12:11590249:11590369:+	0	+
#Deleted in new
chr12	115962631	115962733	ENSG00000258034.1|AC012157.1|lncRNA|chr12:115962631:115962733:+	0	+
#Deleted in new
chr12	116174501	116174872	ENSG00000258337.1|AC130895.1|lncRNA|chr12:116174501:116174872:-	0	-
#Deleted in new
chr12	116181173	116181295	ENSG00000258337.1|AC130895.1|lncRNA|chr12:116181173:116181295:-	0	-
#Deleted in new
chr1	2116204	2116310	ENSG00000067606.16|PRKCZ|pc|chr1:2116204:2116310:+	0	+
#Deleted in new
chr1	211635905	211636445	ENSG00000228792.2|AL356310.1|lncRNA|chr1:211635905:211636445:-	0	-
#Deleted in new
chr12	116368763	116368837	ENSG00000258346.1|AC079384.1|lncRNA|chr12:116368763:116368837:+	0	+
#Deleted in new
chr12	116384342	116384521	ENSG00000258346.1|AC079384.1|lncRNA|chr12:116384342:116384521:+	0	+
#Deleted in new
chr12	116385295	116385411	ENSG00000258346.1|AC079384.1|lncRNA|chr12:116385295:116385411:+	0	+
#Deleted in new
chr1	211640218	211640360	ENSG00000227764.1|LINC01693|lncRNA|chr1:211640218:211640360:+	0	+
#Deleted in new
chr1	211642822	211642867	ENSG00000228792.2|AL356310.1|lncRNA|chr1:211642822:211642867:-	0	-
#Deleted in new
chr1	211654043	211654176	ENSG00000227764.1|LINC01693|lncRNA|chr1:211654043:211654176:+	0	+
#Partially deleted in new
chr1	211654043	211654581	ENSG00000227764.1|LINC01693|lncRNA|chr1:211654043:211654581:+	0	+
#Deleted in new
chr12	116554294	116554381	ENSG00000258102.3|MAP1LC3B2|pc|chr12:116554294:116554381:+	0	+
#Deleted in new
chr12	116554294	116554425	ENSG00000258102.3|MAP1LC3B2|pc|chr12:116554294:116554425:+	0	+
#Partially deleted in new
chr12	116580973	116583672	ENSG00000275898.1|AC125603.4|lncRNA|chr12:116580973:116583672:+	0	+
#Deleted in new
chr1	211658656	211658712	ENSG00000117650.12|NEK2|pc|chr1:211658656:211658712:-	0	-
#Deleted in new
chr12	116661581	116662246	ENSG00000257883.1|AC125603.2|lncRNA|chr12:116661581:116662246:+	0	+
#Deleted in new
chr12	116702792	116703130	ENSG00000257654.1|AC125603.1|lncRNA|chr12:116702792:116703130:+	0	+
#Deleted in new
chr12	116748661	116748744	ENSG00000135119.14|RNFT2|pc|chr12:116748661:116748744:+	0	+
#Deleted in new
chr1	211677066	211677154	ENSG00000231057.3|AC096637.2|lncRNA|chr1:211677066:211677154:+	0	+
#Deleted in new
chr1	21167960	21168039	ENSG00000075151.20|EIF4G3|pc|chr1:21167960:21168039:-	0	-
#Deleted in new
chr12	116801022	116801477	ENSG00000275467.1|AC083806.3|lncRNA|chr12:116801022:116801477:+	0	+
#Deleted in new
chr1	211681763	211681864	ENSG00000231057.3|AC096637.2|lncRNA|chr1:211681763:211681864:+	0	+
#Deleted in new
chr1	211683549	211683624	ENSG00000231057.3|AC096637.2|lncRNA|chr1:211683549:211683624:+	0	+
#Deleted in new
chr1	211683847	211684001	ENSG00000231057.3|AC096637.2|lncRNA|chr1:211683847:211684001:+	0	+
#Deleted in new
chr1	211684653	211684952	ENSG00000231057.3|AC096637.2|lncRNA|chr1:211684653:211684952:+	0	+
#Partially deleted in new
chr12	116849313	116851762	ENSG00000135119.14|RNFT2|pc|chr12:116849313:116851762:+	0	+
#Deleted in new
chr1	211685565	211685792	ENSG00000231057.3|AC096637.2|lncRNA|chr1:211685565:211685792:+	0	+
#Deleted in new
chr1	211685565	211685806	ENSG00000231057.3|AC096637.2|lncRNA|chr1:211685565:211685806:+	0	+
#Partially deleted in new
chr1	211686469	211687459	ENSG00000231057.3|AC096637.2|lncRNA|chr1:211686469:211687459:+	0	+
#Deleted in new
chr1	211686521	211686582	ENSG00000231057.3|AC096637.2|lncRNA|chr1:211686521:211686582:+	0	+
#Deleted in new
chr12	116867648	116867791	ENSG00000135116.9|HRK|pc|chr12:116867648:116867791:-	0	-
#Deleted in new
chr12	116869476	116869655	ENSG00000135116.9|HRK|pc|chr12:116869476:116869655:-	0	-
#Deleted in new
chr1	211687525	211687767	ENSG00000231057.3|AC096637.2|lncRNA|chr1:211687525:211687767:+	0	+
#Deleted in new
chr12	116878457	116878497	ENSG00000135116.9|HRK|pc|chr12:116878457:116878497:-	0	-
#Deleted in new
chr12	116878457	116878544	ENSG00000135116.9|HRK|pc|chr12:116878457:116878544:-	0	-
#Deleted in new
chr1	211689946	211690103	ENSG00000231057.3|AC096637.2|lncRNA|chr1:211689946:211690103:+	0	+
#Partially deleted in new
chr12	116978066	116978378	ENSG00000174989.12|FBXW8|pc|chr12:116978066:116978378:+	0	+
#Partially deleted in new
chr12	117028027	117031148	ENSG00000174989.12|FBXW8|pc|chr12:117028027:117031148:+	0	+
#Deleted in new
chr12	117053928	117053995	ENSG00000088992.17|TESC|pc|chr12:117053928:117053995:-	0	-
#Deleted in new
chr12	117083968	117084090	ENSG00000088992.17|TESC|pc|chr12:117083968:117084090:-	0	-
#Partially deleted in new
chr12	117099480	117099644	ENSG00000258285.1|TESC-AS1|lncRNA|chr12:117099480:117099644:+	0	+
#Deleted in new
chr12	117100452	117100640	ENSG00000258285.1|TESC-AS1|lncRNA|chr12:117100452:117100640:+	0	+
#Deleted in new
chr12	117141390	117142091	ENSG00000258285.1|TESC-AS1|lncRNA|chr12:117141390:117142091:+	0	+
#Deleted in new
chr12	117154249	117154302	ENSG00000135108.14|FBXO21|pc|chr12:117154249:117154302:-	0	-
#Partially deleted in new
chr12	117155053	117155615	ENSG00000135108.14|FBXO21|pc|chr12:117155053:117155615:-	0	-
#Deleted in new
chr1	211715927	211716000	ENSG00000226868.1|AC096637.1|lncRNA|chr1:211715927:211716000:-	0	-
#Deleted in new
chr1	211725301	211725402	ENSG00000226868.1|AC096637.1|lncRNA|chr1:211725301:211725402:-	0	-
#Partially deleted in new
chr12	117330518	117330533	ENSG00000089250.18|NOS1|pc|chr12:117330518:117330533:-	0	-
#Partially deleted in new
chr12	117451700	117452170	ENSG00000089250.18|NOS1|pc|chr12:117451700:117452170:-	0	-
#Deleted in new
chr12	117456908	117456986	ENSG00000255686.1|AC073864.1|lncRNA|chr12:117456908:117456986:+	0	+
#Deleted in new
chr12	117674282	117674356	ENSG00000171435.13|KSR2|pc|chr12:117674282:117674356:-	0	-
#Deleted in new
chr12	117677193	117677251	ENSG00000171435.13|KSR2|pc|chr12:117677193:117677251:-	0	-
#Deleted in new
chr12	118013587	118013672	ENSG00000111445.13|RFC5|pc|chr12:118013587:118013672:+	0	+
#Deleted in new
chr12	118017689	118017815	ENSG00000111445.13|RFC5|pc|chr12:118017689:118017815:+	0	+
#Deleted in new
chr12	118017689	118017852	ENSG00000111445.13|RFC5|pc|chr12:118017689:118017852:+	0	+
#Deleted in new
chr12	118017689	118018053	ENSG00000111445.13|RFC5|pc|chr12:118017689:118018053:+	0	+
#Deleted in new
chr12	118017994	118018053	ENSG00000111445.13|RFC5|pc|chr12:118017994:118018053:+	0	+
#Deleted in new
chr12	118032484	118032618	ENSG00000111445.13|RFC5|pc|chr12:118032484:118032618:+	0	+
#Partially deleted in new
chr12	118035697	118036384	ENSG00000176871.8|WSB2|pc|chr12:118035697:118036384:-	0	-
#Deleted in new
chr12	118062098	118062174	ENSG00000176871.8|WSB2|pc|chr12:118062098:118062174:-	0	-
#Deleted in new
chr12	118062352	118062410	ENSG00000176871.8|WSB2|pc|chr12:118062352:118062410:-	0	-
#Deleted in new
chr12	118062352	118062430	ENSG00000176871.8|WSB2|pc|chr12:118062352:118062430:-	0	-
#Deleted in new
chr12	118071051	118071067	ENSG00000176834.13|VSIG10|pc|chr12:118071051:118071067:-	0	-
#Deleted in new
chr12	118101899	118102267	ENSG00000176834.13|VSIG10|pc|chr12:118101899:118102267:-	0	-
#Deleted in new
chr12	118114349	118114412	ENSG00000176834.13|VSIG10|pc|chr12:118114349:118114412:-	0	-
#Deleted in new
chr12	118117035	118117039	ENSG00000176834.13|VSIG10|pc|chr12:118117035:118117039:-	0	-
#Deleted in new
chr12	118117045	118117463	ENSG00000176834.13|VSIG10|pc|chr12:118117045:118117463:-	0	-
#Deleted in new
chr12	118117648	118117882	ENSG00000176834.13|VSIG10|pc|chr12:118117648:118117882:-	0	-
#Deleted in new
chr12	118117666	118117882	ENSG00000176834.13|VSIG10|pc|chr12:118117666:118117882:-	0	-
#Deleted in new
chr12	118126480	118126663	ENSG00000176834.13|VSIG10|pc|chr12:118126480:118126663:-	0	-
#Deleted in new
chr12	118126480	118126670	ENSG00000176834.13|VSIG10|pc|chr12:118126480:118126670:-	0	-
#Deleted in new
chr12	118135638	118135742	ENSG00000176834.13|VSIG10|pc|chr12:118135638:118135742:-	0	-
#Deleted in new
chr12	118135856	118135948	ENSG00000176834.13|VSIG10|pc|chr12:118135856:118135948:-	0	-
#Deleted in new
chr12	118135856	118136026	ENSG00000176834.13|VSIG10|pc|chr12:118135856:118136026:-	0	-
#Split in new
chr12	118135857	118136344	ENSG00000089220.4|PEBP1|pc|chr12:118135857:118136344:+	0	+
#Deleted in new
chr12	118139016	118139099	ENSG00000089220.4|PEBP1|pc|chr12:118139016:118139099:+	0	+
#Deleted in new
chr12	118255958	118256059	ENSG00000135090.13|TAOK3|pc|chr12:118255958:118256059:-	0	-
#Deleted in new
chr12	118261496	118261673	ENSG00000135090.13|TAOK3|pc|chr12:118261496:118261673:-	0	-
#Deleted in new
chr12	118283604	118283702	ENSG00000135090.13|TAOK3|pc|chr12:118283604:118283702:-	0	-
#Deleted in new
chr12	118295239	118295381	ENSG00000135090.13|TAOK3|pc|chr12:118295239:118295381:-	0	-
#Deleted in new
chr12	118296941	118297163	ENSG00000135090.13|TAOK3|pc|chr12:118296941:118297163:-	0	-
#Deleted in new
chr1	211839463	211839533	ENSG00000229258.5|AL445488.1|lncRNA|chr1:211839463:211839533:+	0	+
#Deleted in new
chr1	211839658	211839933	ENSG00000229258.5|AL445488.1|lncRNA|chr1:211839658:211839933:+	0	+
#Partially deleted in new
chr12	118402232	118402648	ENSG00000111707.11|SUDS3|pc|chr12:118402232:118402648:+	0	+
#Partially deleted in new
chr12	118404055	118404473	ENSG00000111707.11|SUDS3|pc|chr12:118404055:118404473:+	0	+
#Deleted in new
chr12	11840460	11840868	ENSG00000139083.10|ETV6|pc|chr12:11840460:11840868:+	0	+
#Partially deleted in new
chr12	118428280	118428870	ENSG00000275759.1|AC026367.3|lncRNA|chr12:118428280:118428870:+	0	+
#Deleted in new
chr12	118430146	118430699	ENSG00000275409.1|AC026367.2|lncRNA|chr12:118430146:118430699:+	0	+
#Deleted in new
chr1	211846046	211846441	ENSG00000229258.5|AL445488.1|lncRNA|chr1:211846046:211846441:+	0	+
#Deleted in new
chr12	118647874	118647954	ENSG00000255714.1|LINC02460|lncRNA|chr12:118647874:118647954:-	0	-
#Deleted in new
chr12	118648483	118648724	ENSG00000255714.1|LINC02460|lncRNA|chr12:118648483:118648724:-	0	-
#Deleted in new
chr12	118773031	118773302	ENSG00000255618.1|LINC02440|lncRNA|chr12:118773031:118773302:-	0	-
#Deleted in new
chr12	118773610	118773775	ENSG00000255618.1|LINC02440|lncRNA|chr12:118773610:118773775:-	0	-
#Deleted in new
chr12	118832961	118833043	ENSG00000255814.1|LINC02439|lncRNA|chr12:118832961:118833043:-	0	-
#Deleted in new
chr12	118867595	118867663	ENSG00000256149.1|AC087863.1|lncRNA|chr12:118867595:118867663:-	0	-
#Deleted in new
chr12	118891388	118891481	ENSG00000256149.1|AC087863.1|lncRNA|chr12:118891388:118891481:-	0	-
#Deleted in new
chr12	118991726	118991809	ENSG00000256031.2|AC087885.1|lncRNA|chr12:118991726:118991809:+	0	+
#Partially deleted in new
chr12	118992142	118992277	ENSG00000256031.2|AC087885.1|lncRNA|chr12:118992142:118992277:+	0	+
#Partially deleted in new
chr12	119000775	119000843	ENSG00000256031.2|AC087885.1|lncRNA|chr12:119000775:119000843:+	0	+
#Deleted in new
chr12	119001126	119001321	ENSG00000256031.2|AC087885.1|lncRNA|chr12:119001126:119001321:+	0	+
#Deleted in new
chr12	119001650	119001840	ENSG00000256031.2|AC087885.1|lncRNA|chr12:119001650:119001840:+	0	+
#Deleted in new
chr12	119001650	119001842	ENSG00000256031.2|AC087885.1|lncRNA|chr12:119001650:119001842:+	0	+
#Deleted in new
chr12	119031038	119031322	ENSG00000257095.1|AC084361.1|lncRNA|chr12:119031038:119031322:-	0	-
#Deleted in new
chr12	119225833	119225863	ENSG00000256311.1|AC084880.2|lncRNA|chr12:119225833:119225863:-	0	-
#Deleted in new
chr12	119226386	119226547	ENSG00000256311.1|AC084880.2|lncRNA|chr12:119226386:119226547:-	0	-
#Deleted in new
chr12	119236623	119236760	ENSG00000256311.1|AC084880.2|lncRNA|chr12:119236623:119236760:-	0	-
#Deleted in new
chr12	119236912	119237016	ENSG00000256311.1|AC084880.2|lncRNA|chr12:119236912:119237016:-	0	-
#Deleted in new
chr12	119258948	119259017	ENSG00000256311.1|AC084880.2|lncRNA|chr12:119258948:119259017:-	0	-
#Deleted in new
chr12	119283824	119284681	ENSG00000281196.1|LINC00934|lncRNA|chr12:119283824:119284681:-	0	-
#Deleted in new
chr12	119284256	119285118	ENSG00000281196.1|LINC00934|lncRNA|chr12:119284256:119285118:-	0	-
#Deleted in new
chr12	119284771	119285736	ENSG00000281196.1|LINC00934|lncRNA|chr12:119284771:119285736:-	0	-
#Deleted in new
chr12	119301608	119302031	ENSG00000281196.1|LINC00934|lncRNA|chr12:119301608:119302031:-	0	-
#Deleted in new
chr12	119387986	119388328	ENSG00000248636.6|AC002070.1|lncRNA|chr12:119387986:119388328:-	0	-
#Deleted in new
chr12	119387990	119388267	ENSG00000248636.6|AC002070.1|lncRNA|chr12:119387990:119388267:-	0	-
#Deleted in new
chr12	119387990	119388328	ENSG00000248636.6|AC002070.1|lncRNA|chr12:119387990:119388328:-	0	-
#Deleted in new
chr12	119402314	119402430	ENSG00000248636.6|AC002070.1|lncRNA|chr12:119402314:119402430:-	0	-
#Deleted in new
chr12	119429575	119429726	ENSG00000183273.6|CCDC60|pc|chr12:119429575:119429726:+	0	+
#Deleted in new
chr12	119433385	119433636	ENSG00000183273.6|CCDC60|pc|chr12:119433385:119433636:+	0	+
#Deleted in new
chr12	119553547	119553645	ENSG00000248636.6|AC002070.1|lncRNA|chr12:119553547:119553645:-	0	-
#Partially deleted in new
chr1	211966123	211966498	ENSG00000143493.12|INTS7|pc|chr1:211966123:211966498:-	0	-
#Partially deleted in new
chr12	119669423	119669926	ENSG00000111725.10|PRKAB1|pc|chr12:119669423:119669926:+	0	+
#Deleted in new
chr12	119671494	119671512	ENSG00000111725.10|PRKAB1|pc|chr12:119671494:119671512:+	0	+
#Deleted in new
chr12	119671494	119671668	ENSG00000111725.10|PRKAB1|pc|chr12:119671494:119671668:+	0	+
#Partially deleted in new
chr12	119677354	119680001	ENSG00000111725.10|PRKAB1|pc|chr12:119677354:119680001:+	0	+
#Deleted in new
chr12	119678984	119679502	ENSG00000111725.10|PRKAB1|pc|chr12:119678984:119679502:+	0	+
#Deleted in new
chr12	119699767	119699902	ENSG00000255692.1|AC002563.1|lncRNA|chr12:119699767:119699902:+	0	+
#Partially deleted in new
chr1	212011374	212011627	ENSG00000143493.12|INTS7|pc|chr1:212011374:212011627:-	0	-
#Deleted in new
chr12	120200045	120200150	ENSG00000089157.15|RPLP0|pc|chr12:120200045:120200150:-	0	-
#Deleted in new
chr12	120206544	120206621	ENSG00000255857.5|PXN-AS1|lncRNA|chr12:120206544:120206621:+	0	+
#Deleted in new
chr12	120206544	120206712	ENSG00000255857.5|PXN-AS1|lncRNA|chr12:120206544:120206712:+	0	+
#Partially deleted in new
chr12	120226605	120227117	ENSG00000089159.16|PXN|pc|chr12:120226605:120227117:-	0	-
#Deleted in new
chr12	120226654	120227117	ENSG00000089159.16|PXN|pc|chr12:120226654:120227117:-	0	-
#Deleted in new
chr12	120226838	120227117	ENSG00000089159.16|PXN|pc|chr12:120226838:120227117:-	0	-
#Deleted in new
chr12	120248715	120248748	ENSG00000089159.16|PXN|pc|chr12:120248715:120248748:-	0	-
#Deleted in new
chr12	120248715	120248750	ENSG00000089159.16|PXN|pc|chr12:120248715:120248750:-	0	-
#Deleted in new
chr12	120393501	120393577	ENSG00000256695.1|AC003982.2|lncRNA|chr12:120393501:120393577:+	0	+
#Partially deleted in new
chr12	120394396	120394522	ENSG00000256695.1|AC003982.2|lncRNA|chr12:120394396:120394522:+	0	+
#Deleted in new
chr12	120395854	120395994	ENSG00000256695.1|AC003982.2|lncRNA|chr12:120395854:120395994:+	0	+
#Deleted in new
chr12	120454932	120455030	ENSG00000257218.5|GATC|pc|chr12:120454932:120455030:+	0	+
#Partially deleted in new
chr12	120469849	120470104	ENSG00000088986.10|DYNLL1|pc|chr12:120469849:120470104:+	0	+
#Partially deleted in new
chr12	120469856	120470104	ENSG00000088986.10|DYNLL1|pc|chr12:120469856:120470104:+	0	+
#Partially deleted in new
chr12	120469882	120470104	ENSG00000088986.10|DYNLL1|pc|chr12:120469882:120470104:+	0	+
#Deleted in new
chr12	120493802	120493925	ENSG00000088986.10|DYNLL1|pc|chr12:120493802:120493925:+	0	+
#Deleted in new
chr12	120495283	120495437	ENSG00000088986.10|DYNLL1|pc|chr12:120495283:120495437:+	0	+
#Deleted in new
chr12	12049843	12049954	ENSG00000121380.12|BCL2L14|pc|chr12:12049843:12049954:+	0	+
#Deleted in new
chr12	12049860	12049954	ENSG00000121380.12|BCL2L14|pc|chr12:12049860:12049954:+	0	+
#Deleted in new
chr12	12049862	12049954	ENSG00000121380.12|BCL2L14|pc|chr12:12049862:12049954:+	0	+
#Deleted in new
chr12	12049863	12049954	ENSG00000121380.12|BCL2L14|pc|chr12:12049863:12049954:+	0	+
#Deleted in new
chr12	12049890	12049954	ENSG00000121380.12|BCL2L14|pc|chr12:12049890:12049954:+	0	+
#Deleted in new
chr12	120523884	120524002	ENSG00000110871.14|COQ5|pc|chr12:120523884:120524002:-	0	-
#Deleted in new
chr12	120526456	120526546	ENSG00000110871.14|COQ5|pc|chr12:120526456:120526546:-	0	-
#Deleted in new
chr12	120526892	120527378	ENSG00000110871.14|COQ5|pc|chr12:120526892:120527378:-	0	-
#Deleted in new
chr12	120533479	120533621	ENSG00000022840.15|RNF10|pc|chr12:120533479:120533621:+	0	+
#Deleted in new
chr12	120539367	120539441	ENSG00000022840.15|RNF10|pc|chr12:120539367:120539441:+	0	+
#Deleted in new
chr12	120539367	120539468	ENSG00000022840.15|RNF10|pc|chr12:120539367:120539468:+	0	+
#Deleted in new
chr12	120553929	120554000	ENSG00000022840.15|RNF10|pc|chr12:120553929:120554000:+	0	+
#Deleted in new
chr12	120570202	120570231	ENSG00000022840.15|RNF10|pc|chr12:120570202:120570231:+	0	+
#Deleted in new
chr12	120574467	120574537	ENSG00000022840.15|RNF10|pc|chr12:120574467:120574537:+	0	+
#Deleted in new
chr12	120574467	120574938	ENSG00000022840.15|RNF10|pc|chr12:120574467:120574938:+	0	+
#Partially deleted in new
chr12	120575136	120575688	ENSG00000022840.15|RNF10|pc|chr12:120575136:120575688:+	0	+
#Deleted in new
chr12	12068128	12068222	ENSG00000121380.12|BCL2L14|pc|chr12:12068128:12068222:+	0	+
#Deleted in new
chr12	120703866	120704282	ENSG00000277423.1|AC069234.5|lncRNA|chr12:120703866:120704282:+	0	+
#Deleted in new
chr12	120709111	120709523	ENSG00000276188.1|AC069234.4|lncRNA|chr12:120709111:120709523:+	0	+
#Deleted in new
chr12	120740469	120740543	ENSG00000255946.1|AC069234.1|lncRNA|chr12:120740469:120740543:-	0	-
#Deleted in new
chr12	120741211	120741518	ENSG00000255946.1|AC069234.1|lncRNA|chr12:120741211:120741518:-	0	-
#Deleted in new
chr12	120761390	120761592	ENSG00000255946.1|AC069234.1|lncRNA|chr12:120761390:120761592:-	0	-
#Partially deleted in new
chr12	120768952	120770137	ENSG00000157837.15|SPPL3|pc|chr12:120768952:120770137:-	0	-
#Deleted in new
chr12	12077705	12077978	ENSG00000121380.12|BCL2L14|pc|chr12:12077705:12077978:+	0	+
#Deleted in new
chr12	12077705	12078067	ENSG00000121380.12|BCL2L14|pc|chr12:12077705:12078067:+	0	+
#Deleted in new
chr12	120835438	120835657	ENSG00000157837.15|SPPL3|pc|chr12:120835438:120835657:-	0	-
#Deleted in new
chr12	120941727	120941942	ENSG00000241388.4|HNF1A-AS1|lncRNA|chr12:120941727:120941942:-	0	-
#Deleted in new
chr12	120968612	120969008	ENSG00000241388.4|HNF1A-AS1|lncRNA|chr12:120968612:120969008:-	0	-
#Deleted in new
chr12	120969837	120972292	ENSG00000241388.4|HNF1A-AS1|lncRNA|chr12:120969837:120972292:-	0	-
#Deleted in new
chr12	120970129	120970370	ENSG00000241388.4|HNF1A-AS1|lncRNA|chr12:120970129:120970370:-	0	-
#Deleted in new
chr12	120974384	120974598	ENSG00000241388.4|HNF1A-AS1|lncRNA|chr12:120974384:120974598:-	0	-
#Deleted in new
chr12	120974484	120974598	ENSG00000241388.4|HNF1A-AS1|lncRNA|chr12:120974484:120974598:-	0	-
#Deleted in new
chr12	120976798	120976921	ENSG00000241388.4|HNF1A-AS1|lncRNA|chr12:120976798:120976921:-	0	-
#Partially deleted in new
chr12	121005923	121006394	ENSG00000157895.11|C12orf43|pc|chr12:121005923:121006394:-	0	-
#Partially deleted in new
chr12	121006320	121007229	ENSG00000157895.11|C12orf43|pc|chr12:121006320:121007229:-	0	-
#Deleted in new
chr12	121012429	121012448	ENSG00000157895.11|C12orf43|pc|chr12:121012429:121012448:-	0	-
#Deleted in new
chr12	121012429	121012686	ENSG00000157895.11|C12orf43|pc|chr12:121012429:121012686:-	0	-
#Deleted in new
chr12	121096026	121096429	ENSG00000279001.1|AC079602.3|lncRNA|chr12:121096026:121096429:-	0	-
#Partially deleted in new
chr12	12115294	12115327	ENSG00000121380.12|BCL2L14|pc|chr12:12115294:12115327:+	0	+
#Partially deleted in new
chr12	121184304	121186073	ENSG00000089041.16|P2RX7|pc|chr12:121184304:121186073:+	0	+
#Deleted in new
chr12	121190867	121191518	ENSG00000274029.1|AC069209.1|lncRNA|chr12:121190867:121191518:+	0	+
#Partially deleted in new
chr12	121212865	121217281	ENSG00000135124.14|P2RX4|pc|chr12:121212865:121217281:+	0	+
#Partially deleted in new
chr12	121223257	121223434	ENSG00000135124.14|P2RX4|pc|chr12:121223257:121223434:+	0	+
#Deleted in new
chr12	121269788	121269884	ENSG00000110931.18|CAMKK2|pc|chr12:121269788:121269884:-	0	-
#Deleted in new
chr12	121317889	121318154	ENSG00000089053.12|ANAPC5|pc|chr12:121317889:121318154:-	0	-
#Partially deleted in new
chr12	121320384	121321111	ENSG00000089053.12|ANAPC5|pc|chr12:121320384:121321111:-	0	-
#Partially deleted in new
chr12	121326352	121326642	ENSG00000089053.12|ANAPC5|pc|chr12:121326352:121326642:-	0	-
#Deleted in new
chr12	121351059	121351203	ENSG00000089053.12|ANAPC5|pc|chr12:121351059:121351203:-	0	-
#Deleted in new
chr12	121391961	121392229	ENSG00000258435.1|AC048337.1|lncRNA|chr12:121391961:121392229:+	0	+
#Deleted in new
chr12	121402741	121402807	ENSG00000170633.16|RNF34|pc|chr12:121402741:121402807:+	0	+
#Partially deleted in new
chr12	121404848	121405113	ENSG00000170633.16|RNF34|pc|chr12:121404848:121405113:+	0	+
#Deleted in new
chr1	212168206	212168265	ENSG00000229983.1|AL606468.1|lncRNA|chr1:212168206:212168265:+	0	+
#Deleted in new
chr1	212168593	212168715	ENSG00000229983.1|AL606468.1|lncRNA|chr1:212168593:212168715:+	0	+
#Deleted in new
chr1	212170185	212170295	ENSG00000229983.1|AL606468.1|lncRNA|chr1:212170185:212170295:+	0	+
#Deleted in new
chr12	121778076	121778127	ENSG00000188735.12|TMEM120B|pc|chr12:121778076:121778127:+	0	+
#Deleted in new
chr12	121778076	121778356	ENSG00000188735.12|TMEM120B|pc|chr12:121778076:121778356:+	0	+
#Deleted in new
chr12	121780451	121780750	ENSG00000188735.12|TMEM120B|pc|chr12:121780451:121780750:+	0	+
#Deleted in new
chr12	121782031	121783001	ENSG00000188735.12|TMEM120B|pc|chr12:121782031:121783001:+	0	+
#Deleted in new
chr12	121863531	121863596	ENSG00000158104.11|HPD|pc|chr12:121863531:121863596:-	0	-
#Deleted in new
chr12	121874192	121874337	ENSG00000278084.1|AC069503.3|lncRNA|chr12:121874192:121874337:+	0	+
#Partially deleted in new
chr12	121897270	121899845	ENSG00000110801.13|PSMD9|pc|chr12:121897270:121899845:+	0	+
#Deleted in new
chr1	212190040	212190259	ENSG00000229983.1|AL606468.1|lncRNA|chr1:212190040:212190259:+	0	+
#Deleted in new
chr12	121910941	121911006	ENSG00000110801.13|PSMD9|pc|chr12:121910941:121911006:+	0	+
#Partially deleted in new
chr12	121914217	121915944	ENSG00000110801.13|PSMD9|pc|chr12:121914217:121915944:+	0	+
#Partially deleted in new
chr12	121947668	121951530	ENSG00000158023.9|WDR66|pc|chr12:121947668:121951530:+	0	+
#Deleted in new
chr12	121971557	121972069	ENSG00000158023.9|WDR66|pc|chr12:121971557:121972069:+	0	+
#Partially deleted in new
chr12	121996885	121999944	ENSG00000158023.9|WDR66|pc|chr12:121996885:121999944:+	0	+
#Deleted in new
chr12	122007433	122007934	ENSG00000255856.2|AC069503.1|lncRNA|chr12:122007433:122007934:-	0	-
#Deleted in new
chr12	122063305	122063531	ENSG00000256546.1|AC156455.1|lncRNA|chr12:122063305:122063531:+	0	+
#Deleted in new
chr12	122063348	122063531	ENSG00000256546.1|AC156455.1|lncRNA|chr12:122063348:122063531:+	0	+
#Deleted in new
chr12	12210898	12211084	ENSG00000121380.12|BCL2L14|pc|chr12:12210898:12211084:+	0	+
#Deleted in new
chr12	122167737	122167782	ENSG00000158113.12|LRRC43|pc|chr12:122167737:122167782:+	0	+
#Deleted in new
chr12	122183001	122183072	ENSG00000158113.12|LRRC43|pc|chr12:122183001:122183072:+	0	+
#Deleted in new
chr12	122187377	122187477	ENSG00000158113.12|LRRC43|pc|chr12:122187377:122187477:+	0	+
#Deleted in new
chr12	122201978	122202423	ENSG00000158113.12|LRRC43|pc|chr12:122201978:122202423:+	0	+
#Deleted in new
chr12	122204521	122204684	ENSG00000176383.8|B3GNT4|pc|chr12:122204521:122204684:+	0	+
#Partially deleted in new
chr12	122208710	122208765	ENSG00000184047.16|DIABLO|pc|chr12:122208710:122208765:-	0	-
#Deleted in new
chr12	122209696	122209858	ENSG00000184047.16|DIABLO|pc|chr12:122209696:122209858:-	0	-
#Partially deleted in new
chr12	122216088	122216584	ENSG00000184047.16|DIABLO|pc|chr12:122216088:122216584:-	0	-
#Partially deleted in new
chr12	122224644	122226062	ENSG00000184047.16|DIABLO|pc|chr12:122224644:122226062:-	0	-
#Partially deleted in new
chr12	122250982	122251685	ENSG00000139719.9|VPS33A|pc|chr12:122250982:122251685:-	0	-
#Partially deleted in new
chr12	122252880	122253543	ENSG00000139719.9|VPS33A|pc|chr12:122252880:122253543:-	0	-
#Deleted in new
chr12	122255118	122255461	ENSG00000280389.1|AC048338.2|lncRNA|chr12:122255118:122255461:-	0	-
#Deleted in new
chr12	122259933	122260274	ENSG00000280389.1|AC048338.2|lncRNA|chr12:122259933:122260274:-	0	-
#Deleted in new
chr12	122264711	122264804	ENSG00000139719.9|VPS33A|pc|chr12:122264711:122264804:-	0	-
#Partially deleted in new
chr12	122265635	122265725	ENSG00000139719.9|VPS33A|pc|chr12:122265635:122265725:-	0	-
#Partially deleted in new
chr12	122266076	122266316	ENSG00000139719.9|VPS33A|pc|chr12:122266076:122266316:-	0	-
#Partially deleted in new
chr12	122274037	122275823	ENSG00000130779.19|CLIP1|pc|chr12:122274037:122275823:-	0	-
#Partially deleted in new
chr12	122276438	122278472	ENSG00000130779.19|CLIP1|pc|chr12:122276438:122278472:-	0	-
#Partially deleted in new
chr12	122277367	122278203	ENSG00000130779.19|CLIP1|pc|chr12:122277367:122278203:-	0	-
#Deleted in new
chr1	212230202	212230259	ENSG00000226251.5|AL451060.1|lncRNA|chr1:212230202:212230259:-	0	-
#Deleted in new
chr12	122396582	122396705	ENSG00000257097.1|CLIP1-AS1|lncRNA|chr12:122396582:122396705:+	0	+
#Partially deleted in new
chr12	122480189	122481422	ENSG00000033030.13|ZCCHC8|pc|chr12:122480189:122481422:-	0	-
#Partially deleted in new
chr12	122501186	122501641	ENSG00000275265.1|AC127002.1|lncRNA|chr12:122501186:122501641:+	0	+
#Partially deleted in new
chr12	122506371	122507253	ENSG00000111011.17|RSRC2|pc|chr12:122506371:122507253:-	0	-
#Partially deleted in new
chr12	122526169	122526293	ENSG00000111011.17|RSRC2|pc|chr12:122526169:122526293:-	0	-
#Deleted in new
chr12	122592817	122593184	ENSG00000184445.11|KNTC1|pc|chr12:122592817:122593184:+	0	+
#Partially deleted in new
chr12	122593415	122594385	ENSG00000184445.11|KNTC1|pc|chr12:122593415:122594385:+	0	+
#Deleted in new
chr12	122601850	122601951	ENSG00000184445.11|KNTC1|pc|chr12:122601850:122601951:+	0	+
#Deleted in new
chr12	122617406	122617501	ENSG00000184445.11|KNTC1|pc|chr12:122617406:122617501:+	0	+
#Deleted in new
chr12	122634129	122634673	ENSG00000274191.1|AC026333.4|lncRNA|chr12:122634129:122634673:+	0	+
#Duplicated in new
chr12	122714649	122715979	ENSG00000256249.1|AC026333.3|lncRNA|chr12:122714649:122715979:+	0	+
#Partially deleted in new
chr12	122834452	122835006	ENSG00000130787.13|HIP1R|pc|chr12:122834452:122835006:+	0	+
#Deleted in new
chr12	122920950	122921043	ENSG00000150967.17|ABCB9|pc|chr12:122920950:122921043:-	0	-
#Deleted in new
chr12	122924524	122924810	ENSG00000150967.17|ABCB9|pc|chr12:122924524:122924810:-	0	-
#Partially deleted in new
chr12	122931325	122932328	ENSG00000150967.17|ABCB9|pc|chr12:122931325:122932328:-	0	-
#Partially deleted in new
chr12	122931640	122932328	ENSG00000150967.17|ABCB9|pc|chr12:122931640:122932328:-	0	-
#Partially deleted in new
chr12	122939448	122940284	ENSG00000150967.17|ABCB9|pc|chr12:122939448:122940284:-	0	-
#Partially deleted in new
chr12	122947475	122948571	ENSG00000150967.17|ABCB9|pc|chr12:122947475:122948571:-	0	-
#Partially deleted in new
chr12	122950450	122951005	ENSG00000150967.17|ABCB9|pc|chr12:122950450:122951005:-	0	-
#Deleted in new
chr12	122972865	122973233	ENSG00000150967.17|ABCB9|pc|chr12:122972865:122973233:-	0	-
#Deleted in new
chr12	122973042	122973158	ENSG00000150967.17|ABCB9|pc|chr12:122973042:122973158:-	0	-
#Deleted in new
chr1	212297447	212297801	ENSG00000230063.1|AL360091.2|lncRNA|chr1:212297447:212297801:+	0	+
#Deleted in new
chr12	122974514	122974682	ENSG00000150967.17|ABCB9|pc|chr12:122974514:122974682:-	0	-
#Partially deleted in new
chr12	122974579	122975121	ENSG00000111325.16|OGFOD2|pc|chr12:122974579:122975121:+	0	+
#Deleted in new
chr12	122974679	122974728	ENSG00000111325.16|OGFOD2|pc|chr12:122974679:122974728:+	0	+
#Deleted in new
chr12	122975463	122975543	ENSG00000111325.16|OGFOD2|pc|chr12:122975463:122975543:+	0	+
#Partially deleted in new
chr12	122976252	122976401	ENSG00000111325.16|OGFOD2|pc|chr12:122976252:122976401:+	0	+
#Partially deleted in new
chr12	122976870	122978569	ENSG00000256028.2|AC026362.1|lncRNA|chr12:122976870:122978569:+	0	+
#Deleted in new
chr12	122977424	122978199	ENSG00000111325.16|OGFOD2|pc|chr12:122977424:122978199:+	0	+
#Deleted in new
chr12	122977980	122978056	ENSG00000111325.16|OGFOD2|pc|chr12:122977980:122978056:+	0	+
#Deleted in new
chr12	122977980	122978057	ENSG00000111325.16|OGFOD2|pc|chr12:122977980:122978057:+	0	+
#Deleted in new
chr12	122977980	122978091	ENSG00000111325.16|OGFOD2|pc|chr12:122977980:122978091:+	0	+
#Deleted in new
chr12	122977980	122978199	ENSG00000111325.16|OGFOD2|pc|chr12:122977980:122978199:+	0	+
#Partially deleted in new
chr12	122980230	122980385	ENSG00000182196.13|ARL6IP4|pc|chr12:122980230:122980385:+	0	+
#Partially deleted in new
chr12	122980262	122980385	ENSG00000182196.13|ARL6IP4|pc|chr12:122980262:122980385:+	0	+
#Deleted in new
chr1	212299283	212299579	ENSG00000230063.1|AL360091.2|lncRNA|chr1:212299283:212299579:+	0	+
#Deleted in new
chr1	212299494	212299625	ENSG00000234915.1|AL360091.3|lncRNA|chr1:212299494:212299625:-	0	-
#Deleted in new
chr1	212306782	212306900	ENSG00000066027.11|PPP2R5A|pc|chr1:212306782:212306900:+	0	+
#Deleted in new
chr12	123105354	123105499	ENSG00000090975.12|PITPNM2|pc|chr12:123105354:123105499:-	0	-
#Deleted in new
chr1	212313766	212313816	ENSG00000066027.11|PPP2R5A|pc|chr1:212313766:212313816:+	0	+
#Deleted in new
chr1	212319376	212319545	ENSG00000066027.11|PPP2R5A|pc|chr1:212319376:212319545:+	0	+
#Deleted in new
chr12	123248277	123251567	ENSG00000130921.7|C12orf65|pc|chr12:123248277:123251567:+	0	+
#Partially deleted in new
chr12	123252029	123252542	ENSG00000235423.8|AC068768.1|lncRNA|chr12:123252029:123252542:-	0	-
#Partially deleted in new
chr12	123256812	123257959	ENSG00000130921.7|C12orf65|pc|chr12:123256812:123257959:+	0	+
#Partially deleted in new
chr12	123258747	123258930	ENSG00000235423.8|AC068768.1|lncRNA|chr12:123258747:123258930:-	0	-
#Deleted in new
chr12	123258976	123259148	ENSG00000235423.8|AC068768.1|lncRNA|chr12:123258976:123259148:-	0	-
#Deleted in new
chr12	123259042	123259148	ENSG00000235423.8|AC068768.1|lncRNA|chr12:123259042:123259148:-	0	-
#Deleted in new
chr12	123260273	123260447	ENSG00000235423.8|AC068768.1|lncRNA|chr12:123260273:123260447:-	0	-
#Deleted in new
chr12	123260273	123260503	ENSG00000235423.8|AC068768.1|lncRNA|chr12:123260273:123260503:-	0	-
#Partially deleted in new
chr12	123260825	123260943	ENSG00000235423.8|AC068768.1|lncRNA|chr12:123260825:123260943:-	0	-
#Deleted in new
chr12	123262059	123262402	ENSG00000269980.1|AC068768.2|lncRNA|chr12:123262059:123262402:+	0	+
#Deleted in new
chr1	212333951	212334024	ENSG00000066027.11|PPP2R5A|pc|chr1:212333951:212334024:+	0	+
#Deleted in new
chr12	123391379	123391430	ENSG00000183955.12|KMT5A|pc|chr12:123391379:123391430:+	0	+
#Partially deleted in new
chr12	123410682	123415921	ENSG00000150977.10|RILPL2|pc|chr12:123410682:123415921:-	0	-
#Deleted in new
chr12	123458963	123459216	ENSG00000184209.14|SNRNP35|pc|chr12:123458963:123459216:+	0	+
#Deleted in new
chr12	123459522	123459900	ENSG00000184209.14|SNRNP35|pc|chr12:123459522:123459900:+	0	+
#Deleted in new
chr12	123464428	123464899	ENSG00000184209.14|SNRNP35|pc|chr12:123464428:123464899:+	0	+
#Deleted in new
chr12	123464505	123464594	ENSG00000184209.14|SNRNP35|pc|chr12:123464505:123464594:+	0	+
#Deleted in new
chr12	12348178	12348248	ENSG00000111261.13|MANSC1|pc|chr12:12348178:12348248:-	0	-
#Deleted in new
chr12	123484814	123484974	ENSG00000188026.12|RILPL1|pc|chr12:123484814:123484974:-	0	-
#Deleted in new
chr12	123485127	123485223	ENSG00000188026.12|RILPL1|pc|chr12:123485127:123485223:-	0	-
#Deleted in new
chr12	123513357	123514428	ENSG00000188026.12|RILPL1|pc|chr12:123513357:123514428:-	0	-
#Deleted in new
chr12	123515274	123515513	ENSG00000274427.1|AC145423.2|lncRNA|chr12:123515274:123515513:-	0	-
#Partially deleted in new
chr12	12355405	12356805	ENSG00000205791.3|LOH12CR2|lncRNA|chr12:12355405:12356805:-	0	-
#Deleted in new
chr1	212357417	212357475	ENSG00000229832.1|AL360091.1|lncRNA|chr1:212357417:212357475:+	0	+
#Partially deleted in new
chr12	123575890	123583167	ENSG00000247373.3|AC055713.1|lncRNA|chr12:123575890:123583167:-	0	-
#Deleted in new
chr1	212357915	212358353	ENSG00000229832.1|AL360091.1|lncRNA|chr1:212357915:212358353:+	0	+
#Deleted in new
chr12	123583600	123583698	ENSG00000247373.3|AC055713.1|lncRNA|chr12:123583600:123583698:-	0	-
#Partially deleted in new
chr12	123604872	123605981	ENSG00000111364.15|DDX55|pc|chr12:123604872:123605981:+	0	+
#Deleted in new
chr12	123633544	123633604	ENSG00000111361.12|EIF2B1|pc|chr12:123633544:123633604:-	0	-
#Deleted in new
chr12	123633544	123633657	ENSG00000111361.12|EIF2B1|pc|chr12:123633544:123633657:-	0	-
#Deleted in new
chr12	123633544	123633688	ENSG00000111361.12|EIF2B1|pc|chr12:123633544:123633688:-	0	-
#Deleted in new
chr12	123633544	123633766	ENSG00000111361.12|EIF2B1|pc|chr12:123633544:123633766:-	0	-
#Deleted in new
chr12	123633738	123633872	ENSG00000111358.13|GTF2H3|pc|chr12:123633738:123633872:+	0	+
#Deleted in new
chr12	123633827	123633872	ENSG00000111358.13|GTF2H3|pc|chr12:123633827:123633872:+	0	+
#Deleted in new
chr12	123633828	123633872	ENSG00000111358.13|GTF2H3|pc|chr12:123633828:123633872:+	0	+
#Deleted in new
chr12	123633832	123633872	ENSG00000111358.13|GTF2H3|pc|chr12:123633832:123633872:+	0	+
#Deleted in new
chr12	123633844	123633872	ENSG00000111358.13|GTF2H3|pc|chr12:123633844:123633872:+	0	+
#Deleted in new
chr12	123639956	123640001	ENSG00000111358.13|GTF2H3|pc|chr12:123639956:123640001:+	0	+
#Partially deleted in new
chr12	123649067	123650485	ENSG00000279953.1|AC117503.4|lncRNA|chr12:123649067:123650485:+	0	+
#Deleted in new
chr12	123652706	123652735	ENSG00000111358.13|GTF2H3|pc|chr12:123652706:123652735:+	0	+
#Partially deleted in new
chr12	123660165	123660628	ENSG00000111358.13|GTF2H3|pc|chr12:123660165:123660628:+	0	+
#Partially deleted in new
chr12	123660165	123660829	ENSG00000111358.13|GTF2H3|pc|chr12:123660165:123660829:+	0	+
#Partially deleted in new
chr12	123660165	123662603	ENSG00000111358.13|GTF2H3|pc|chr12:123660165:123662603:+	0	+
#Partially deleted in new
chr12	123660165	123662606	ENSG00000111358.13|GTF2H3|pc|chr12:123660165:123662606:+	0	+
#Deleted in new
chr12	123700036	123700154	ENSG00000168778.11|TCTN2|pc|chr12:123700036:123700154:+	0	+
#Partially deleted in new
chr12	123707603	123708403	ENSG00000168778.11|TCTN2|pc|chr12:123707603:123708403:+	0	+
#Deleted in new
chr12	123708241	123708386	ENSG00000255839.1|AC117503.2|lncRNA|chr12:123708241:123708386:-	0	-
#Partially deleted in new
chr12	123723209	123724791	ENSG00000185344.13|ATP6V0A2|pc|chr12:123723209:123724791:+	0	+
#Partially deleted in new
chr12	123730641	123734008	ENSG00000185344.13|ATP6V0A2|pc|chr12:123730641:123734008:+	0	+
#Deleted in new
chr12	123737546	123737687	ENSG00000185344.13|ATP6V0A2|pc|chr12:123737546:123737687:+	0	+
#Deleted in new
chr12	123738958	123739013	ENSG00000185344.13|ATP6V0A2|pc|chr12:123738958:123739013:+	0	+
#Partially deleted in new
chr12	123749995	123751229	ENSG00000185344.13|ATP6V0A2|pc|chr12:123749995:123751229:+	0	+
#Partially deleted in new
chr12	123753990	123754537	ENSG00000185344.13|ATP6V0A2|pc|chr12:123753990:123754537:+	0	+
#Partially deleted in new
chr12	123754245	123754794	ENSG00000280300.1|AC117503.5|lncRNA|chr12:123754245:123754794:-	0	-
#Partially deleted in new
chr12	123756326	123756986	ENSG00000185344.13|ATP6V0A2|pc|chr12:123756326:123756986:+	0	+
#Deleted in new
chr1	212376793	212376884	ENSG00000065600.12|TMEM206|pc|chr1:212376793:212376884:-	0	-
#Deleted in new
chr12	123771600	123771698	ENSG00000197653.15|DNAH10|pc|chr12:123771600:123771698:+	0	+
#Deleted in new
chr12	123925460	123926083	ENSG00000270028.1|AC079315.1|lncRNA|chr12:123925460:123926083:-	0	-
#Partially deleted in new
chr12	123943346	123946773	ENSG00000119242.8|CCDC92|pc|chr12:123943346:123946773:-	0	-
#Deleted in new
chr12	123944269	123944364	ENSG00000119242.8|CCDC92|pc|chr12:123944269:123944364:-	0	-
#Deleted in new
chr12	123944271	123944364	ENSG00000119242.8|CCDC92|pc|chr12:123944271:123944364:-	0	-
#Deleted in new
chr12	123944271	123944369	ENSG00000119242.8|CCDC92|pc|chr12:123944271:123944369:-	0	-
#Deleted in new
chr12	123944668	123944740	ENSG00000119242.8|CCDC92|pc|chr12:123944668:123944740:-	0	-
#Deleted in new
chr12	123945703	123945800	ENSG00000119242.8|CCDC92|pc|chr12:123945703:123945800:-	0	-
#Deleted in new
chr12	123956283	123956444	ENSG00000119242.8|CCDC92|pc|chr12:123956283:123956444:-	0	-
#Partially deleted in new
chr12	123971456	123971714	ENSG00000270095.1|AC068790.6|lncRNA|chr12:123971456:123971714:-	0	-
#Partially deleted in new
chr12	123971739	123972090	ENSG00000119242.8|CCDC92|pc|chr12:123971739:123972090:-	0	-
#Deleted in new
chr12	123971844	123971881	ENSG00000179195.15|ZNF664|pc|chr12:123971844:123971881:+	0	+
#Partially deleted in new
chr12	123971894	123972051	ENSG00000119242.8|CCDC92|pc|chr12:123971894:123972051:-	0	-
#Deleted in new
chr12	123989308	123989442	ENSG00000179195.15|ZNF664|pc|chr12:123989308:123989442:+	0	+
#Deleted in new
chr12	123998396	123998753	ENSG00000179195.15|ZNF664|pc|chr12:123998396:123998753:+	0	+
#Deleted in new
chr12	124003422	124003540	ENSG00000179195.15|ZNF664|pc|chr12:124003422:124003540:+	0	+
#Deleted in new
chr12	124004877	124004935	ENSG00000179195.15|ZNF664|pc|chr12:124004877:124004935:+	0	+
#Partially deleted in new
chr12	124085760	124088598	ENSG00000275389.1|AC068790.9|lncRNA|chr12:124085760:124088598:+	0	+
#Deleted in new
chr1	212413897	212414080	ENSG00000065600.12|TMEM206|pc|chr1:212413897:212414080:-	0	-
#Deleted in new
chr12	124149594	124149791	ENSG00000178882.14|RFLNA|pc|chr12:124149594:124149791:+	0	+
#Deleted in new
chr12	124206227	124208295	ENSG00000256596.1|AC026358.1|lncRNA|chr12:124206227:124208295:+	0	+
#Deleted in new
chr12	124208830	124209018	ENSG00000256596.1|AC026358.1|lncRNA|chr12:124208830:124209018:+	0	+
#Deleted in new
chr12	124235544	124235602	ENSG00000178882.14|RFLNA|pc|chr12:124235544:124235602:+	0	+
#Deleted in new
chr12	124289163	124289370	ENSG00000178882.14|RFLNA|pc|chr12:124289163:124289370:+	0	+
#Partially deleted in new
chr12	124314191	124316022	ENSG00000178882.14|RFLNA|pc|chr12:124314191:124316022:+	0	+
#Partially deleted in new
chr12	124314191	124316024	ENSG00000178882.14|RFLNA|pc|chr12:124314191:124316024:+	0	+
#Partially deleted in new
chr12	124331474	124332467	ENSG00000196498.13|NCOR2|pc|chr12:124331474:124332467:-	0	-
#Deleted in new
chr1	212434704	212435033	ENSG00000117691.9|NENF|pc|chr1:212434704:212435033:+	0	+
#Partially deleted in new
chr12	124347401	124347911	ENSG00000196498.13|NCOR2|pc|chr12:124347401:124347911:-	0	-
#Partially deleted in new
chr12	124348173	124348940	ENSG00000196498.13|NCOR2|pc|chr12:124348173:124348940:-	0	-
#Deleted in new
chr12	124374412	124374463	ENSG00000196498.13|NCOR2|pc|chr12:124374412:124374463:-	0	-
#Deleted in new
chr12	1244542	1244956	ENSG00000082805.19|ERC1|pc|chr12:1244542:1244956:+	0	+
#Deleted in new
chr12	124514007	124514813	ENSG00000214650.2|AC073592.1|lncRNA|chr12:124514007:124514813:+	0	+
#Partially deleted in new
chr12	124537843	124539677	ENSG00000279071.1|AC073592.3|lncRNA|chr12:124537843:124539677:+	0	+
#Deleted in new
chr12	124555904	124556432	ENSG00000279121.1|AC073592.5|lncRNA|chr12:124555904:124556432:+	0	+
#Deleted in new
chr12	124561868	124562283	ENSG00000279334.1|AC073592.6|lncRNA|chr12:124561868:124562283:+	0	+
#Deleted in new
chr12	124593180	124593691	ENSG00000280097.1|AC073592.8|lncRNA|chr12:124593180:124593691:-	0	-
#Deleted in new
chr12	124622289	124623069	ENSG00000278973.1|AC073592.2|lncRNA|chr12:124622289:124623069:-	0	-
#Deleted in new
chr12	124623390	124623987	ENSG00000280444.1|AC073592.10|lncRNA|chr12:124623390:124623987:+	0	+
#Deleted in new
chr12	124637998	124638444	ENSG00000279087.1|AC073592.4|lncRNA|chr12:124637998:124638444:-	0	-
#Partially deleted in new
chr12	124782682	124786503	ENSG00000073060.15|SCARB1|pc|chr12:124782682:124786503:-	0	-
#Deleted in new
chr12	124880169	124880461	ENSG00000073060.15|SCARB1|pc|chr12:124880169:124880461:-	0	-
#Deleted in new
chr12	124882501	124882668	ENSG00000073060.15|SCARB1|pc|chr12:124882501:124882668:-	0	-
#Deleted in new
chr12	124915165	124915303	ENSG00000150991.14|UBC|pc|chr12:124915165:124915303:-	0	-
#Partially deleted in new
chr12	124946824	124947887	ENSG00000150990.7|DHX37|pc|chr12:124946824:124947887:-	0	-
#Partially deleted in new
chr12	124946825	124947887	ENSG00000150990.7|DHX37|pc|chr12:124946825:124947887:-	0	-
#Partially deleted in new
chr12	124946830	124948181	ENSG00000150990.7|DHX37|pc|chr12:124946830:124948181:-	0	-
#Partially deleted in new
chr12	124948083	124948615	ENSG00000150990.7|DHX37|pc|chr12:124948083:124948615:-	0	-
#Partially deleted in new
chr12	125100893	125102793	ENSG00000081760.16|AACS|pc|chr12:125100893:125102793:+	0	+
#Partially deleted in new
chr12	125105150	125105794	ENSG00000081760.16|AACS|pc|chr12:125105150:125105794:+	0	+
#Partially deleted in new
chr12	125117566	125118765	ENSG00000081760.16|AACS|pc|chr12:125117566:125118765:+	0	+
#Partially deleted in new
chr12	125119857	125124769	ENSG00000081760.16|AACS|pc|chr12:125119857:125124769:+	0	+
#Partially deleted in new
chr12	125125741	125128274	ENSG00000081760.16|AACS|pc|chr12:125125741:125128274:+	0	+
#Partially deleted in new
chr12	125128545	125129460	ENSG00000081760.16|AACS|pc|chr12:125128545:125129460:+	0	+
#Deleted in new
chr12	125135789	125136192	ENSG00000081760.16|AACS|pc|chr12:125135789:125136192:+	0	+
#Deleted in new
chr12	125138244	125141711	ENSG00000279233.1|AC122688.3|lncRNA|chr12:125138244:125141711:+	0	+
#Deleted in new
chr12	125150057	125150585	ENSG00000256814.1|AC122688.2|lncRNA|chr12:125150057:125150585:+	0	+
#Deleted in new
chr12	125151337	125151394	ENSG00000256814.1|AC122688.2|lncRNA|chr12:125151337:125151394:+	0	+
#Deleted in new
chr12	125160524	125164918	ENSG00000280117.1|AC122688.4|lncRNA|chr12:125160524:125164918:+	0	+
#Deleted in new
chr12	125300935	125301917	ENSG00000279462.1|AC093028.1|lncRNA|chr12:125300935:125301917:+	0	+
#Deleted in new
chr12	125327406	125327507	ENSG00000139364.10|TMEM132B|pc|chr12:125327406:125327507:+	0	+
#Deleted in new
chr1	212545693	212545765	ENSG00000228067.1|LINC01740|lncRNA|chr1:212545693:212545765:+	0	+
#Deleted in new
chr1	212555842	212556065	ENSG00000228067.1|LINC01740|lncRNA|chr1:212555842:212556065:+	0	+
#Partially deleted in new
chr12	125622451	125622628	ENSG00000139364.10|TMEM132B|pc|chr12:125622451:125622628:+	0	+
#Partially deleted in new
chr12	125622495	125622628	ENSG00000139364.10|TMEM132B|pc|chr12:125622495:125622628:+	0	+
#Deleted in new
chr1	21256687	21256717	ENSG00000117298.14|ECE1|pc|chr1:21256687:21256717:-	0	-
#Deleted in new
chr12	1257137	1257237	ENSG00000082805.19|ERC1|pc|chr12:1257137:1257237:+	0	+
#Deleted in new
chr12	125808667	125809808	ENSG00000280125.1|AC005252.2|lncRNA|chr12:125808667:125809808:+	0	+
#Deleted in new
chr12	125858861	125861119	ENSG00000280415.1|AC005252.3|lncRNA|chr12:125858861:125861119:+	0	+
#Deleted in new
chr12	125958687	125958952	ENSG00000249267.6|LINC00939|lncRNA|chr12:125958687:125958952:-	0	-
#Deleted in new
chr12	125958689	125958952	ENSG00000249267.6|LINC00939|lncRNA|chr12:125958689:125958952:-	0	-
#Deleted in new
chr12	125958701	125958952	ENSG00000249267.6|LINC00939|lncRNA|chr12:125958701:125958952:-	0	-
#Deleted in new
chr12	125961741	125961981	ENSG00000249267.6|LINC00939|lncRNA|chr12:125961741:125961981:-	0	-
#Deleted in new
chr12	125961741	125963083	ENSG00000249267.6|LINC00939|lncRNA|chr12:125961741:125963083:-	0	-
#Deleted in new
chr12	125963010	125963083	ENSG00000249267.6|LINC00939|lncRNA|chr12:125963010:125963083:-	0	-
#Deleted in new
chr12	125967193	125967342	ENSG00000249267.6|LINC00939|lncRNA|chr12:125967193:125967342:-	0	-
#Deleted in new
chr12	125969810	125969996	ENSG00000249267.6|LINC00939|lncRNA|chr12:125969810:125969996:-	0	-
#Deleted in new
chr12	125983203	125983373	ENSG00000249267.6|LINC00939|lncRNA|chr12:125983203:125983373:-	0	-
#Deleted in new
chr12	125983203	125983374	ENSG00000249267.6|LINC00939|lncRNA|chr12:125983203:125983374:-	0	-
#Deleted in new
chr12	125983701	125983740	ENSG00000256276.1|AC005186.1|lncRNA|chr12:125983701:125983740:+	0	+
#Deleted in new
chr12	125985608	125985750	ENSG00000256276.1|AC005186.1|lncRNA|chr12:125985608:125985750:+	0	+
#Deleted in new
chr12	125985845	125986234	ENSG00000256276.1|AC005186.1|lncRNA|chr12:125985845:125986234:+	0	+
#Deleted in new
chr12	126032994	126033295	ENSG00000275212.1|AC005858.1|lncRNA|chr12:126032994:126033295:+	0	+
#Deleted in new
chr12	126042438	126042583	ENSG00000275212.1|AC005858.1|lncRNA|chr12:126042438:126042583:+	0	+
#Deleted in new
chr12	126043254	126043485	ENSG00000275212.1|AC005858.1|lncRNA|chr12:126043254:126043485:+	0	+
#Deleted in new
chr12	126095991	126096100	ENSG00000256342.1|LINC02359|lncRNA|chr12:126095991:126096100:+	0	+
#Deleted in new
chr12	126096239	126096366	ENSG00000256342.1|LINC02359|lncRNA|chr12:126096239:126096366:+	0	+
#Deleted in new
chr12	126100688	126100805	ENSG00000256342.1|LINC02359|lncRNA|chr12:126100688:126100805:+	0	+
#Deleted in new
chr12	126102214	126102313	ENSG00000256342.1|LINC02359|lncRNA|chr12:126102214:126102313:+	0	+
#Deleted in new
chr12	126103744	126103935	ENSG00000256342.1|LINC02359|lncRNA|chr12:126103744:126103935:+	0	+
#Deleted in new
chr12	126106458	126107047	ENSG00000280364.1|AC005858.3|lncRNA|chr12:126106458:126107047:-	0	-
#Deleted in new
chr12	126130165	126130865	ENSG00000280398.1|AC005858.4|lncRNA|chr12:126130165:126130865:-	0	-
#Deleted in new
chr12	126141951	126142377	ENSG00000280272.1|AC005858.2|lncRNA|chr12:126141951:126142377:+	0	+
#Deleted in new
chr12	126168234	126168531	ENSG00000256763.1|LINC02467|lncRNA|chr12:126168234:126168531:+	0	+
#Deleted in new
chr12	126171590	126171666	ENSG00000256763.1|LINC02467|lncRNA|chr12:126171590:126171666:+	0	+
#Partially deleted in new
chr1	212618126	212619247	ENSG00000162772.16|ATF3|pc|chr1:212618126:212619247:+	0	+
#Partially deleted in new
chr1	212619045	212619266	ENSG00000162772.16|ATF3|pc|chr1:212619045:212619266:+	0	+
#Deleted in new
chr12	126191262	126191317	ENSG00000255595.2|AC005885.1|pc|chr12:126191262:126191317:+	0	+
#Deleted in new
chr12	126191377	126191607	ENSG00000255595.2|AC005885.1|pc|chr12:126191377:126191607:+	0	+
#Deleted in new
chr12	126191508	126191607	ENSG00000255595.2|AC005885.1|pc|chr12:126191508:126191607:+	0	+
#Deleted in new
chr12	126225264	126225314	ENSG00000255595.2|AC005885.1|pc|chr12:126225264:126225314:+	0	+
#Deleted in new
chr12	126405458	126405528	ENSG00000256494.1|AC007368.1|lncRNA|chr12:126405458:126405528:-	0	-
#Deleted in new
chr12	126442965	126443027	ENSG00000214043.7|LINC02347|lncRNA|chr12:126442965:126443027:+	0	+
#Deleted in new
chr12	126444880	126445053	ENSG00000214043.7|LINC02347|lncRNA|chr12:126444880:126445053:+	0	+
#Deleted in new
chr12	126444884	126445053	ENSG00000214043.7|LINC02347|lncRNA|chr12:126444884:126445053:+	0	+
#Deleted in new
chr12	126447978	126448061	ENSG00000214043.7|LINC02347|lncRNA|chr12:126447978:126448061:+	0	+
#Partially deleted in new
chr12	126457932	126458130	ENSG00000214043.7|LINC02347|lncRNA|chr12:126457932:126458130:+	0	+
#Deleted in new
chr12	126458891	126458975	ENSG00000214043.7|LINC02347|lncRNA|chr12:126458891:126458975:+	0	+
#Deleted in new
chr12	126460786	126461000	ENSG00000214043.7|LINC02347|lncRNA|chr12:126460786:126461000:+	0	+
#Deleted in new
chr12	126462717	126462825	ENSG00000214043.7|LINC02347|lncRNA|chr12:126462717:126462825:+	0	+
#Deleted in new
chr12	126465713	126465989	ENSG00000214043.7|LINC02347|lncRNA|chr12:126465713:126465989:+	0	+
#Deleted in new
chr12	126466548	126466727	ENSG00000214043.7|LINC02347|lncRNA|chr12:126466548:126466727:+	0	+
#Deleted in new
chr12	126468757	126469107	ENSG00000214043.7|LINC02347|lncRNA|chr12:126468757:126469107:+	0	+
#Deleted in new
chr12	126469731	126469806	ENSG00000214043.7|LINC02347|lncRNA|chr12:126469731:126469806:+	0	+
#Deleted in new
chr12	126469731	126469885	ENSG00000214043.7|LINC02347|lncRNA|chr12:126469731:126469885:+	0	+
#Deleted in new
chr12	126470660	126470815	ENSG00000214043.7|LINC02347|lncRNA|chr12:126470660:126470815:+	0	+
#Deleted in new
chr12	126472585	126472790	ENSG00000214043.7|LINC02347|lncRNA|chr12:126472585:126472790:+	0	+
#Partially deleted in new
chr12	12648938	12649713	ENSG00000275963.1|AC008115.4|lncRNA|chr12:12648938:12649713:+	0	+
#Deleted in new
chr12	126610033	126610263	ENSG00000256732.1|AC006065.4|lncRNA|chr12:126610033:126610263:-	0	-
#Deleted in new
chr12	126628171	126628222	ENSG00000255944.1|AC006065.3|lncRNA|chr12:126628171:126628222:-	0	-
#Deleted in new
chr1	212664586	212664687	ENSG00000237980.1|AL590648.3|lncRNA|chr1:212664586:212664687:-	0	-
#Deleted in new
chr12	126647369	126647449	ENSG00000255944.1|AC006065.3|lncRNA|chr12:126647369:126647449:-	0	-
#Deleted in new
chr12	126663678	126664098	ENSG00000256732.1|AC006065.4|lncRNA|chr12:126663678:126664098:-	0	-
#Deleted in new
chr12	126665444	126665564	ENSG00000256732.1|AC006065.4|lncRNA|chr12:126665444:126665564:-	0	-
#Deleted in new
chr12	126675894	126676243	ENSG00000278866.1|AC006065.5|lncRNA|chr12:126675894:126676243:-	0	-
#Deleted in new
chr12	126677261	126677806	ENSG00000279171.1|AC006065.6|lncRNA|chr12:126677261:126677806:+	0	+
#Partially deleted in new
chr1	21266847	21267251	ENSG00000236936.1|AL031005.1|lncRNA|chr1:21266847:21267251:+	0	+
#Deleted in new
chr12	126690034	126690260	ENSG00000256732.1|AC006065.4|lncRNA|chr12:126690034:126690260:-	0	-
#Deleted in new
chr12	126690034	126690268	ENSG00000256732.1|AC006065.4|lncRNA|chr12:126690034:126690268:-	0	-
#Deleted in new
chr12	126690034	126690306	ENSG00000256732.1|AC006065.4|lncRNA|chr12:126690034:126690306:-	0	-
#Deleted in new
chr12	126690034	126690318	ENSG00000256732.1|AC006065.4|lncRNA|chr12:126690034:126690318:-	0	-
#Deleted in new
chr12	126690034	126690322	ENSG00000255944.1|AC006065.3|lncRNA|chr12:126690034:126690322:-	0	-
#Deleted in new
chr12	126690478	126690698	ENSG00000255998.1|AC069235.1|lncRNA|chr12:126690478:126690698:+	0	+
#Deleted in new
chr12	126690480	126690588	ENSG00000255998.1|AC069235.1|lncRNA|chr12:126690480:126690588:+	0	+
#Deleted in new
chr12	126691799	126691915	ENSG00000255998.1|AC069235.1|lncRNA|chr12:126691799:126691915:+	0	+
#Deleted in new
chr12	126691799	126691918	ENSG00000255998.1|AC069235.1|lncRNA|chr12:126691799:126691918:+	0	+
#Deleted in new
chr12	126695516	126695832	ENSG00000255998.1|AC069235.1|lncRNA|chr12:126695516:126695832:+	0	+
#Deleted in new
chr12	126726269	126726542	ENSG00000189238.5|LINC00943|lncRNA|chr12:126726269:126726542:+	0	+
#Deleted in new
chr12	126726561	126726932	ENSG00000189238.5|LINC00943|lncRNA|chr12:126726561:126726932:+	0	+
#Deleted in new
chr12	126726599	126726932	ENSG00000189238.5|LINC00943|lncRNA|chr12:126726599:126726932:+	0	+
#Deleted in new
chr12	126729786	126729966	ENSG00000256128.5|LINC00944|lncRNA|chr12:126729786:126729966:-	0	-
#Deleted in new
chr12	126730762	126730803	ENSG00000256128.5|LINC00944|lncRNA|chr12:126730762:126730803:-	0	-
#Deleted in new
chr12	126732295	126732407	ENSG00000256128.5|LINC00944|lncRNA|chr12:126732295:126732407:-	0	-
#Deleted in new
chr12	126732342	126732407	ENSG00000256128.5|LINC00944|lncRNA|chr12:126732342:126732407:-	0	-
#Partially deleted in new
chr12	126735144	126735398	ENSG00000256128.5|LINC00944|lncRNA|chr12:126735144:126735398:-	0	-
#Deleted in new
chr12	126736665	126736831	ENSG00000256128.5|LINC00944|lncRNA|chr12:126736665:126736831:-	0	-
#Deleted in new
chr12	126737006	126737186	ENSG00000189238.5|LINC00943|lncRNA|chr12:126737006:126737186:+	0	+
#Partially deleted in new
chr12	126741664	126742255	ENSG00000189238.5|LINC00943|lncRNA|chr12:126741664:126742255:+	0	+
#Partially deleted in new
chr12	126744769	126746252	ENSG00000189238.5|LINC00943|lncRNA|chr12:126744769:126746252:+	0	+
#Partially deleted in new
chr12	126745005	126746236	ENSG00000189238.5|LINC00943|lncRNA|chr12:126745005:126746236:+	0	+
#Deleted in new
chr12	126746260	126746332	ENSG00000256128.5|LINC00944|lncRNA|chr12:126746260:126746332:-	0	-
#Deleted in new
chr12	126747930	126748127	ENSG00000256128.5|LINC00944|lncRNA|chr12:126747930:126748127:-	0	-
#Deleted in new
chr12	126748055	126748127	ENSG00000256128.5|LINC00944|lncRNA|chr12:126748055:126748127:-	0	-
#Deleted in new
chr12	126752163	126752451	ENSG00000256128.5|LINC00944|lncRNA|chr12:126752163:126752451:-	0	-
#Deleted in new
chr12	126752340	126752451	ENSG00000256128.5|LINC00944|lncRNA|chr12:126752340:126752451:-	0	-
#Deleted in new
chr12	126760931	126761045	ENSG00000256128.5|LINC00944|lncRNA|chr12:126760931:126761045:-	0	-
#Deleted in new
chr12	126760931	126761057	ENSG00000256128.5|LINC00944|lncRNA|chr12:126760931:126761057:-	0	-
#Deleted in new
chr12	126763414	126763498	ENSG00000256128.5|LINC00944|lncRNA|chr12:126763414:126763498:-	0	-
#Deleted in new
chr12	126772078	126772262	ENSG00000256128.5|LINC00944|lncRNA|chr12:126772078:126772262:-	0	-
#Deleted in new
chr12	126772078	126772356	ENSG00000256128.5|LINC00944|lncRNA|chr12:126772078:126772356:-	0	-
#Deleted in new
chr12	126772078	126772411	ENSG00000256128.5|LINC00944|lncRNA|chr12:126772078:126772411:-	0	-
#Deleted in new
chr12	126869489	126870562	ENSG00000249873.6|LINC02372|lncRNA|chr12:126869489:126870562:-	0	-
#Deleted in new
chr12	126870100	126870562	ENSG00000249873.6|LINC02372|lncRNA|chr12:126870100:126870562:-	0	-
#Deleted in new
chr12	126870465	126870559	ENSG00000249873.6|LINC02372|lncRNA|chr12:126870465:126870559:-	0	-
#Deleted in new
chr12	126873325	126873504	ENSG00000249873.6|LINC02372|lncRNA|chr12:126873325:126873504:-	0	-
#Deleted in new
chr12	126873333	126873504	ENSG00000249873.6|LINC02372|lncRNA|chr12:126873333:126873504:-	0	-
#Deleted in new
chr12	126874456	126874650	ENSG00000249873.6|LINC02372|lncRNA|chr12:126874456:126874650:-	0	-
#Deleted in new
chr12	126874456	126874665	ENSG00000249873.6|LINC02372|lncRNA|chr12:126874456:126874665:-	0	-
#Deleted in new
chr12	126874456	126874690	ENSG00000249873.6|LINC02372|lncRNA|chr12:126874456:126874690:-	0	-
#Deleted in new
chr12	126876106	126876232	ENSG00000256286.1|AC078878.2|lncRNA|chr12:126876106:126876232:+	0	+
#Deleted in new
chr12	12688512	12688932	ENSG00000183150.7|GPR19|pc|chr12:12688512:12688932:-	0	-
#Deleted in new
chr12	126922706	126922959	ENSG00000249345.6|LINC02405|lncRNA|chr12:126922706:126922959:-	0	-
#Deleted in new
chr12	126923029	126923205	ENSG00000249345.6|LINC02405|lncRNA|chr12:126923029:126923205:-	0	-
#Deleted in new
chr12	126975838	126975917	ENSG00000249345.6|LINC02405|lncRNA|chr12:126975838:126975917:-	0	-
#Deleted in new
chr12	127000555	127000650	ENSG00000249345.6|LINC02405|lncRNA|chr12:127000555:127000650:-	0	-
#Deleted in new
chr12	127030527	127030627	ENSG00000249345.6|LINC02405|lncRNA|chr12:127030527:127030627:-	0	-
#Deleted in new
chr12	127031866	127032066	ENSG00000249345.6|LINC02405|lncRNA|chr12:127031866:127032066:-	0	-
#Deleted in new
chr12	127060086	127060349	ENSG00000249345.6|LINC02405|lncRNA|chr12:127060086:127060349:-	0	-
#Deleted in new
chr12	127060086	127060397	ENSG00000249345.6|LINC02405|lncRNA|chr12:127060086:127060397:-	0	-
#Deleted in new
chr12	127060086	127060401	ENSG00000249345.6|LINC02405|lncRNA|chr12:127060086:127060401:-	0	-
#Deleted in new
chr12	127145640	127145834	ENSG00000256001.1|AC079949.1|lncRNA|chr12:127145640:127145834:-	0	-
#Deleted in new
chr12	127145703	127145834	ENSG00000256001.1|AC079949.1|lncRNA|chr12:127145703:127145834:-	0	-
#Deleted in new
chr12	127145941	127145989	ENSG00000256001.1|AC079949.1|lncRNA|chr12:127145941:127145989:-	0	-
#Deleted in new
chr12	127146335	127146532	ENSG00000256001.1|AC079949.1|lncRNA|chr12:127146335:127146532:-	0	-
#Deleted in new
chr1	212726152	212727179	ENSG00000117697.14|NSL1|pc|chr1:212726152:212727179:-	0	-
#Deleted in new
chr12	127274466	127274521	ENSG00000256292.1|LINC02376|lncRNA|chr12:127274466:127274521:-	0	-
#Deleted in new
chr12	127275448	127275574	ENSG00000256292.1|LINC02376|lncRNA|chr12:127275448:127275574:-	0	-
#Deleted in new
chr12	127324154	127324805	ENSG00000256362.1|LINC02375|lncRNA|chr12:127324154:127324805:-	0	-
#Deleted in new
chr12	127339968	127340072	ENSG00000256362.1|LINC02375|lncRNA|chr12:127339968:127340072:-	0	-
#Deleted in new
chr12	127372242	127372669	ENSG00000280024.1|AC048347.1|lncRNA|chr12:127372242:127372669:+	0	+
#Deleted in new
chr12	127462506	127463197	ENSG00000279952.1|AC068787.1|lncRNA|chr12:127462506:127463197:+	0	+
#Deleted in new
chr12	127598167	127598618	ENSG00000255945.1|AC025252.1|lncRNA|chr12:127598167:127598618:+	0	+
#Partially deleted in new
chr12	127631247	127631705	ENSG00000256022.5|LINC02411|lncRNA|chr12:127631247:127631705:-	0	-
#Partially deleted in new
chr12	127634095	127634746	ENSG00000256022.5|LINC02411|lncRNA|chr12:127634095:127634746:-	0	-
#Partially deleted in new
chr12	127634095	127634768	ENSG00000256022.5|LINC02411|lncRNA|chr12:127634095:127634768:-	0	-
#Deleted in new
chr12	127635357	127635402	ENSG00000256022.5|LINC02411|lncRNA|chr12:127635357:127635402:-	0	-
#Deleted in new
chr12	127635943	127636095	ENSG00000256022.5|LINC02411|lncRNA|chr12:127635943:127636095:-	0	-
#Deleted in new
chr12	127635943	127636118	ENSG00000256022.5|LINC02411|lncRNA|chr12:127635943:127636118:-	0	-
#Deleted in new
chr12	127635943	127636119	ENSG00000256022.5|LINC02411|lncRNA|chr12:127635943:127636119:-	0	-
#Deleted in new
chr1	212766188	212766273	ENSG00000117697.14|NSL1|pc|chr1:212766188:212766273:-	0	-
#Deleted in new
chr12	127793526	127793578	ENSG00000256922.1|AC087894.2|lncRNA|chr12:127793526:127793578:-	0	-
#Deleted in new
chr12	127794526	127794764	ENSG00000256922.1|AC087894.2|lncRNA|chr12:127794526:127794764:-	0	-
#Partially deleted in new
chr1	212781931	212782426	ENSG00000117697.14|NSL1|pc|chr1:212781931:212782426:-	0	-
#Deleted in new
chr12	127821011	127821183	ENSG00000256922.1|AC087894.2|lncRNA|chr12:127821011:127821183:-	0	-
#Deleted in new
chr12	127825937	127826286	ENSG00000279475.1|AC087894.3|lncRNA|chr12:127825937:127826286:-	0	-
#Deleted in new
chr12	127893867	127893961	ENSG00000256597.2|LINC02393|lncRNA|chr12:127893867:127893961:+	0	+
#Deleted in new
chr1	212792922	212792981	ENSG00000203705.10|TATDN3|pc|chr1:212792922:212792981:+	0	+
#Deleted in new
chr12	127934289	127934349	ENSG00000256193.5|LINC00507|lncRNA|chr12:127934289:127934349:+	0	+
#Deleted in new
chr12	127940594	127940735	ENSG00000256971.1|LINC00508|lncRNA|chr12:127940594:127940735:-	0	-
#Deleted in new
chr12	127944717	127944799	ENSG00000256193.5|LINC00507|lncRNA|chr12:127944717:127944799:+	0	+
#Deleted in new
chr12	127949973	127951450	ENSG00000256193.5|LINC00507|lncRNA|chr12:127949973:127951450:+	0	+
#Deleted in new
chr12	127949973	127951510	ENSG00000256193.5|LINC00507|lncRNA|chr12:127949973:127951510:+	0	+
#Deleted in new
chr12	127949973	127951552	ENSG00000256193.5|LINC00507|lncRNA|chr12:127949973:127951552:+	0	+
#Deleted in new
chr12	127950107	127950160	ENSG00000256971.1|LINC00508|lncRNA|chr12:127950107:127950160:-	0	-
#Partially deleted in new
chr1	212796516	212796977	ENSG00000203705.10|TATDN3|pc|chr1:212796516:212796977:+	0	+
#Partially deleted in new
chr1	212797131	212797682	ENSG00000203705.10|TATDN3|pc|chr1:212797131:212797682:+	0	+
#Deleted in new
chr12	128023787	128023822	ENSG00000256643.1|LINC02441|lncRNA|chr12:128023787:128023822:-	0	-
#Partially deleted in new
chr12	128025858	128026199	ENSG00000256643.1|LINC02441|lncRNA|chr12:128025858:128026199:-	0	-
#Deleted in new
chr12	128086984	128087298	ENSG00000256551.1|LINC02369|lncRNA|chr12:128086984:128087298:-	0	-
#Deleted in new
chr12	128087728	128087856	ENSG00000256551.1|LINC02369|lncRNA|chr12:128087728:128087856:-	0	-
#Deleted in new
chr12	128112228	128112423	ENSG00000256551.1|LINC02369|lncRNA|chr12:128112228:128112423:-	0	-
#Deleted in new
chr12	128112704	128112844	ENSG00000256551.1|LINC02369|lncRNA|chr12:128112704:128112844:-	0	-
#Deleted in new
chr12	128112710	128112844	ENSG00000256551.1|LINC02369|lncRNA|chr12:128112710:128112844:-	0	-
#Deleted in new
chr12	128117913	128118130	ENSG00000256551.1|LINC02369|lncRNA|chr12:128117913:128118130:-	0	-
#Deleted in new
chr12	128117913	128118132	ENSG00000256551.1|LINC02369|lncRNA|chr12:128117913:128118132:-	0	-
#Deleted in new
chr12	128118216	128118777	ENSG00000256659.1|LINC02368|lncRNA|chr12:128118216:128118777:+	0	+
#Deleted in new
chr12	128120538	128120907	ENSG00000256659.1|LINC02368|lncRNA|chr12:128120538:128120907:+	0	+
#Partially deleted in new
chr1	212815012	212816617	ENSG00000203705.10|TATDN3|pc|chr1:212815012:212816617:+	0	+
#Partially deleted in new
chr1	212815012	212816626	ENSG00000203705.10|TATDN3|pc|chr1:212815012:212816626:+	0	+
#Deleted in new
chr12	128187933	128188343	ENSG00000276487.1|AC061709.1|lncRNA|chr12:128187933:128188343:-	0	-
#Deleted in new
chr12	128188003	128188343	ENSG00000276487.1|AC061709.1|lncRNA|chr12:128188003:128188343:-	0	-
#Deleted in new
chr12	128191177	128191364	ENSG00000276487.1|AC061709.1|lncRNA|chr12:128191177:128191364:-	0	-
#Deleted in new
chr12	128191311	128191389	ENSG00000276487.1|AC061709.1|lncRNA|chr12:128191311:128191389:-	0	-
#Partially deleted in new
chr12	12820347	12820778	ENSG00000213782.7|DDX47|pc|chr12:12820347:12820778:+	0	+
#Partially deleted in new
chr12	128288158	128289056	ENSG00000279180.1|AC061709.2|lncRNA|chr12:128288158:128289056:+	0	+
#Deleted in new
chr12	128399977	128400180	ENSG00000257025.1|AC023595.1|lncRNA|chr12:128399977:128400180:+	0	+
#Duplicated in new
chr12	128404453	128404814	ENSG00000257025.1|AC023595.1|lncRNA|chr12:128404453:128404814:+	0	+
#Split in new
chr1	212852107	212854309	ENSG00000198468.7|FLVCR1-AS1|lncRNA|chr1:212852107:212854309:-	0	-
#Partially deleted in new
chr1	212856603	212856918	ENSG00000198468.7|FLVCR1-AS1|lncRNA|chr1:212856603:212856918:-	0	-
#Partially deleted in new
chr1	212856603	212857172	ENSG00000198468.7|FLVCR1-AS1|lncRNA|chr1:212856603:212857172:-	0	-
#Deleted in new
chr1	212857765	212858088	ENSG00000198468.7|FLVCR1-AS1|lncRNA|chr1:212857765:212858088:-	0	-
#Partially deleted in new
chr12	128814774	128815928	ENSG00000139370.11|SLC15A4|pc|chr12:128814774:128815928:-	0	-
#Deleted in new
chr12	128819527	128819867	ENSG00000139370.11|SLC15A4|pc|chr12:128819527:128819867:-	0	-
#Deleted in new
chr12	128826835	128827579	ENSG00000274695.1|AC108704.1|lncRNA|chr12:128826835:128827579:+	0	+
#Deleted in new
chr12	128864135	128864179	ENSG00000151948.11|GLT1D1|pc|chr12:128864135:128864179:+	0	+
#Deleted in new
chr12	128906906	128906954	ENSG00000151948.11|GLT1D1|pc|chr12:128906906:128906954:+	0	+
#Deleted in new
chr12	12891973	12892042	ENSG00000013588.7|GPRC5A|pc|chr12:12891973:12892042:+	0	+
#Deleted in new
chr12	128930233	128930461	ENSG00000151948.11|GLT1D1|pc|chr12:128930233:128930461:+	0	+
#Partially deleted in new
chr12	128982928	128983739	ENSG00000151948.11|GLT1D1|pc|chr12:128982928:128983739:+	0	+
#Partially deleted in new
chr12	128982928	128984300	ENSG00000151948.11|GLT1D1|pc|chr12:128982928:128984300:+	0	+
#Partially deleted in new
chr12	128982928	128984956	ENSG00000151948.11|GLT1D1|pc|chr12:128982928:128984956:+	0	+
#Partially deleted in new
chr12	128982928	128984968	ENSG00000151948.11|GLT1D1|pc|chr12:128982928:128984968:+	0	+
#Partially deleted in new
chr12	129084496	129086000	ENSG00000151952.15|TMEM132D|pc|chr12:129084496:129086000:-	0	-
#Partially deleted in new
chr12	129109628	129111669	ENSG00000249196.6|TMEM132D-AS1|lncRNA|chr12:129109628:129111669:+	0	+
#Deleted in new
chr12	129109692	129109757	ENSG00000249196.6|TMEM132D-AS1|lncRNA|chr12:129109692:129109757:+	0	+
#Deleted in new
chr12	129109694	129109757	ENSG00000249196.6|TMEM132D-AS1|lncRNA|chr12:129109694:129109757:+	0	+
#Deleted in new
chr12	129109698	129109757	ENSG00000249196.6|TMEM132D-AS1|lncRNA|chr12:129109698:129109757:+	0	+
#Deleted in new
chr12	129113064	129113293	ENSG00000249196.6|TMEM132D-AS1|lncRNA|chr12:129113064:129113293:+	0	+
#Deleted in new
chr12	129113064	129113294	ENSG00000249196.6|TMEM132D-AS1|lncRNA|chr12:129113064:129113294:+	0	+
#Deleted in new
chr12	129113100	129113294	ENSG00000249196.6|TMEM132D-AS1|lncRNA|chr12:129113100:129113294:+	0	+
#Deleted in new
chr1	212916786	212917037	ENSG00000282718.1|AC104333.4|lncRNA|chr1:212916786:212917037:+	0	+
#Deleted in new
chr1	212917115	212917200	ENSG00000282718.1|AC104333.4|lncRNA|chr1:212917115:212917200:+	0	+
#Deleted in new
chr1	212917359	212917577	ENSG00000282718.1|AC104333.4|lncRNA|chr1:212917359:212917577:+	0	+
#Deleted in new
chr12	129210929	129211048	ENSG00000256699.1|TMEM132D-AS2|lncRNA|chr12:129210929:129211048:+	0	+
#Deleted in new
chr12	129211962	129212662	ENSG00000256699.1|TMEM132D-AS2|lncRNA|chr12:129211962:129212662:+	0	+
#Deleted in new
chr12	12927725	12927803	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12927725:12927803:+	0	+
#Deleted in new
chr12	12927726	12927803	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12927726:12927803:+	0	+
#Deleted in new
chr12	12927757	12927803	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12927757:12927803:+	0	+
#Deleted in new
chr12	12927761	12927803	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12927761:12927803:+	0	+
#Deleted in new
chr12	12927763	12927803	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12927763:12927803:+	0	+
#Partially deleted in new
chr12	12944371	12944481	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12944371:12944481:+	0	+
#Deleted in new
chr12	129522541	129522763	ENSG00000256085.1|AC130404.1|lncRNA|chr12:129522541:129522763:-	0	-
#Deleted in new
chr12	12952737	12952750	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12952737:12952750:+	0	+
#Deleted in new
chr12	12952737	12952831	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12952737:12952831:+	0	+
#Deleted in new
chr12	12962299	12962406	ENSG00000256011.1|AC007688.2|lncRNA|chr12:12962299:12962406:+	0	+
#Deleted in new
chr12	12963277	12963539	ENSG00000256011.1|AC007688.2|lncRNA|chr12:12963277:12963539:+	0	+
#Deleted in new
chr12	12966758	12966897	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12966758:12966897:+	0	+
#Partially deleted in new
chr1	212966956	212967096	ENSG00000143494.15|VASH2|pc|chr1:212966956:212967096:+	0	+
#Deleted in new
chr12	129681426	129681597	ENSG00000256137.1|AC117373.1|lncRNA|chr12:129681426:129681597:-	0	-
#Deleted in new
chr12	129682891	129683068	ENSG00000256137.1|AC117373.1|lncRNA|chr12:129682891:129683068:-	0	-
#Deleted in new
chr12	12977422	12977577	ENSG00000013583.8|HEBP1|pc|chr12:12977422:12977577:-	0	-
#Deleted in new
chr12	12978940	12979021	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12978940:12979021:+	0	+
#Partially deleted in new
chr12	12979999	12980094	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12979999:12980094:+	0	+
#Partially deleted in new
chr12	12979999	12980307	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12979999:12980307:+	0	+
#Partially deleted in new
chr12	12979999	12980391	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12979999:12980391:+	0	+
#Partially deleted in new
chr12	12979999	12980562	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12979999:12980562:+	0	+
#Partially deleted in new
chr12	12983343	12984645	ENSG00000247498.9|GPRC5D-AS1|lncRNA|chr12:12983343:12984645:+	0	+
#Deleted in new
chr12	129839927	129840522	ENSG00000280196.1|AC055717.3|lncRNA|chr12:129839927:129840522:-	0	-
#Deleted in new
chr12	129852207	129853809	ENSG00000251536.2|AC055717.1|lncRNA|chr12:129852207:129853809:-	0	-
#Deleted in new
chr12	129854560	129854944	ENSG00000251536.2|AC055717.1|lncRNA|chr12:129854560:129854944:-	0	-
#Partially deleted in new
chr1	212991550	212992037	ENSG00000143494.15|VASH2|pc|chr1:212991550:212992037:+	0	+
#Deleted in new
chr12	13000450	13000481	ENSG00000255621.1|AC023790.2|lncRNA|chr12:13000450:13000481:+	0	+
#Partially deleted in new
chr1	213000785	213002234	ENSG00000174606.13|ANGEL2|pc|chr1:213000785:213002234:-	0	-
#Deleted in new
chr12	130024492	130024604	ENSG00000261650.1|AC055717.2|lncRNA|chr12:130024492:130024604:-	0	-
#Deleted in new
chr12	130033453	130034910	ENSG00000214039.8|LINC02418|lncRNA|chr12:130033453:130034910:-	0	-
#Partially deleted in new
chr12	130035021	130037017	ENSG00000214039.8|LINC02418|lncRNA|chr12:130035021:130037017:-	0	-
#Partially deleted in new
chr12	130043918	130045057	ENSG00000214039.8|LINC02418|lncRNA|chr12:130043918:130045057:-	0	-
#Deleted in new
chr12	130044634	130044956	ENSG00000261650.1|AC055717.2|lncRNA|chr12:130044634:130044956:-	0	-
#Deleted in new
chr12	130047131	130047209	ENSG00000256298.1|AC135388.1|lncRNA|chr12:130047131:130047209:+	0	+
#Deleted in new
chr12	130048101	130048376	ENSG00000256298.1|AC135388.1|lncRNA|chr12:130048101:130048376:+	0	+
#Partially deleted in new
chr1	213006538	213007198	ENSG00000174606.13|ANGEL2|pc|chr1:213006538:213007198:-	0	-
#Deleted in new
chr12	130070324	130071638	ENSG00000256906.1|LINC02419|lncRNA|chr12:130070324:130071638:+	0	+
#Partially deleted in new
chr12	130072286	130072685	ENSG00000256906.1|LINC02419|lncRNA|chr12:130072286:130072685:+	0	+
#Deleted in new
chr12	13008094	13008155	ENSG00000255621.1|AC023790.2|lncRNA|chr12:13008094:13008155:+	0	+
#Deleted in new
chr12	130121924	130122974	ENSG00000279193.1|AC026336.4|lncRNA|chr12:130121924:130122974:-	0	-
#Deleted in new
chr12	130138692	130140768	ENSG00000276122.1|AC026336.3|lncRNA|chr12:130138692:130140768:+	0	+
#Partially deleted in new
chr12	130144314	130153598	ENSG00000250208.6|FZD10-AS1|lncRNA|chr12:130144314:130153598:-	0	-
#Deleted in new
chr12	130144953	130145691	ENSG00000280405.1|AC026336.5|lncRNA|chr12:130144953:130145691:+	0	+
#Deleted in new
chr12	130151592	130153598	ENSG00000250208.6|FZD10-AS1|lncRNA|chr12:130151592:130153598:-	0	-
#Deleted in new
chr12	130154472	130154688	ENSG00000250208.6|FZD10-AS1|lncRNA|chr12:130154472:130154688:-	0	-
#Deleted in new
chr12	130154472	130154691	ENSG00000250208.6|FZD10-AS1|lncRNA|chr12:130154472:130154691:-	0	-
#Deleted in new
chr12	130155271	130155782	ENSG00000250208.6|FZD10-AS1|lncRNA|chr12:130155271:130155782:-	0	-
#Deleted in new
chr12	130155351	130155782	ENSG00000250208.6|FZD10-AS1|lncRNA|chr12:130155351:130155782:-	0	-
#Deleted in new
chr12	130155733	130155782	ENSG00000250208.6|FZD10-AS1|lncRNA|chr12:130155733:130155782:-	0	-
#Deleted in new
chr12	130157043	130157210	ENSG00000250208.6|FZD10-AS1|lncRNA|chr12:130157043:130157210:-	0	-
#Deleted in new
chr12	13019511	13020444	ENSG00000255621.1|AC023790.2|lncRNA|chr12:13019511:13020444:+	0	+
#Deleted in new
chr12	13022013	13022161	ENSG00000255621.1|AC023790.2|lncRNA|chr12:13022013:13022161:+	0	+
#Deleted in new
chr12	130249678	130250018	ENSG00000259862.1|AC026336.2|lncRNA|chr12:130249678:130250018:+	0	+
#Deleted in new
chr12	130266302	130266725	ENSG00000259862.1|AC026336.2|lncRNA|chr12:130266302:130266725:+	0	+
#Partially deleted in new
chr12	130337886	130338146	ENSG00000125207.7|PIWIL1|pc|chr12:130337886:130338146:+	0	+
#Deleted in new
chr12	130338107	130338171	ENSG00000125207.7|PIWIL1|pc|chr12:130338107:130338171:+	0	+
#Deleted in new
chr12	130338135	130338223	ENSG00000125207.7|PIWIL1|pc|chr12:130338135:130338223:+	0	+
#Deleted in new
chr12	130339461	130339543	ENSG00000125207.7|PIWIL1|pc|chr12:130339461:130339543:+	0	+
#Partially deleted in new
chr12	130345305	130345878	ENSG00000125207.7|PIWIL1|pc|chr12:130345305:130345878:+	0	+
#Deleted in new
chr12	130350995	130351707	ENSG00000279343.1|AC127071.1|lncRNA|chr12:130350995:130351707:-	0	-
#Partially deleted in new
chr12	130366436	130366647	ENSG00000125207.7|PIWIL1|pc|chr12:130366436:130366647:+	0	+
#Deleted in new
chr12	130383363	130383890	ENSG00000279478.1|AC127071.2|lncRNA|chr12:130383363:130383890:+	0	+
#Partially deleted in new
chr12	130419534	130419815	ENSG00000256064.1|AC063926.1|lncRNA|chr12:130419534:130419815:-	0	-
#Partially deleted in new
chr12	130420885	130421019	ENSG00000256064.1|AC063926.1|lncRNA|chr12:130420885:130421019:-	0	-
#Partially deleted in new
chr12	130425003	130430661	ENSG00000279905.1|AC063926.3|lncRNA|chr12:130425003:130430661:+	0	+
#Deleted in new
chr12	130431646	130432273	ENSG00000060709.14|RIMBP2|pc|chr12:130431646:130432273:-	0	-
#Deleted in new
chr12	130465007	130466315	ENSG00000279146.1|AC063926.2|lncRNA|chr12:130465007:130466315:-	0	-
#Deleted in new
chr12	130651370	130651479	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130651370:130651479:+	0	+
#Deleted in new
chr12	130660033	130660651	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130660033:130660651:+	0	+
#Deleted in new
chr12	130660214	130660430	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130660214:130660430:+	0	+
#Deleted in new
chr12	130667293	130667481	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130667293:130667481:+	0	+
#Deleted in new
chr12	130667468	130667481	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130667468:130667481:+	0	+
#Deleted in new
chr12	130667590	130667672	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130667590:130667672:+	0	+
#Deleted in new
chr12	130667590	130667682	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130667590:130667682:+	0	+
#Deleted in new
chr12	130667590	130667830	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130667590:130667830:+	0	+
#Deleted in new
chr12	130668036	130668233	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130668036:130668233:+	0	+
#Deleted in new
chr12	130668350	130668502	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130668350:130668502:+	0	+
#Deleted in new
chr12	130668350	130668546	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130668350:130668546:+	0	+
#Deleted in new
chr12	130669105	130669122	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130669105:130669122:+	0	+
#Deleted in new
chr12	130669105	130669233	ENSG00000256343.7|AC095350.1|lncRNA|chr12:130669105:130669233:+	0	+
#Deleted in new
chr12	130775693	130776546	ENSG00000279650.1|AC073912.3|lncRNA|chr12:130775693:130776546:-	0	-
#Partially deleted in new
chr12	130789599	130791977	ENSG00000111450.13|STX2|pc|chr12:130789599:130791977:-	0	-
#Deleted in new
chr12	130810605	130810887	ENSG00000256250.1|AC073912.1|lncRNA|chr12:130810605:130810887:+	0	+
#Deleted in new
chr12	130810820	130810958	ENSG00000256299.1|AC073912.2|lncRNA|chr12:130810820:130810958:-	0	-
#Deleted in new
chr12	130812133	130812438	ENSG00000256250.1|AC073912.1|lncRNA|chr12:130812133:130812438:+	0	+
#Deleted in new
chr12	130812309	130812443	ENSG00000111450.13|STX2|pc|chr12:130812309:130812443:-	0	-
#Partially deleted in new
chr12	130873102	130874733	ENSG00000132341.11|RAN|pc|chr12:130873102:130874733:+	0	+
#Deleted in new
chr12	130874033	130874084	ENSG00000132341.11|RAN|pc|chr12:130874033:130874084:+	0	+
#Deleted in new
chr12	130956383	130958031	ENSG00000279940.1|AC073862.3|lncRNA|chr12:130956383:130958031:-	0	-
#Deleted in new
chr12	130967031	130967065	ENSG00000111452.12|ADGRD1|pc|chr12:130967031:130967065:+	0	+
#Deleted in new
chr12	130973076	130973359	ENSG00000111452.12|ADGRD1|pc|chr12:130973076:130973359:+	0	+
#Partially deleted in new
chr12	130976785	130978812	ENSG00000280200.1|AC073862.5|lncRNA|chr12:130976785:130978812:+	0	+
#Deleted in new
chr12	130977561	130977673	ENSG00000256204.1|AC073862.1|lncRNA|chr12:130977561:130977673:+	0	+
#Partially deleted in new
chr12	130988311	130990028	ENSG00000280002.1|AC078925.4|lncRNA|chr12:130988311:130990028:-	0	-
#Deleted in new
chr12	130993819	130993976	ENSG00000256151.1|ADGRD1-AS1|lncRNA|chr12:130993819:130993976:-	0	-
#Deleted in new
chr12	130993907	130993967	ENSG00000256151.1|ADGRD1-AS1|lncRNA|chr12:130993907:130993967:-	0	-
#Deleted in new
chr12	130994152	130994260	ENSG00000111452.12|ADGRD1|pc|chr12:130994152:130994260:+	0	+
#Deleted in new
chr12	130994156	130994267	ENSG00000111452.12|ADGRD1|pc|chr12:130994156:130994267:+	0	+
#Deleted in new
chr12	131022768	131024741	ENSG00000279128.1|AC078925.2|lncRNA|chr12:131022768:131024741:-	0	-
#Deleted in new
chr12	131030569	131030775	ENSG00000256810.1|AC078925.1|lncRNA|chr12:131030569:131030775:-	0	-
#Deleted in new
chr12	131069212	131070890	ENSG00000111452.12|ADGRD1|pc|chr12:131069212:131070890:+	0	+
#Deleted in new
chr12	131070852	131070890	ENSG00000111452.12|ADGRD1|pc|chr12:131070852:131070890:+	0	+
#Deleted in new
chr12	131091911	131092104	ENSG00000111452.12|ADGRD1|pc|chr12:131091911:131092104:+	0	+
#Deleted in new
chr12	131121953	131121995	ENSG00000111452.12|ADGRD1|pc|chr12:131121953:131121995:+	0	+
#Partially deleted in new
chr12	131137643	131138229	ENSG00000111452.12|ADGRD1|pc|chr12:131137643:131138229:+	0	+
#Deleted in new
chr12	131202770	131202922	ENSG00000204603.6|LINC01257|lncRNA|chr12:131202770:131202922:+	0	+
#Deleted in new
chr12	131207206	131207295	ENSG00000204603.6|LINC01257|lncRNA|chr12:131207206:131207295:+	0	+
#Deleted in new
chr12	131207674	131207908	ENSG00000204603.6|LINC01257|lncRNA|chr12:131207674:131207908:+	0	+
#Deleted in new
chr12	131209255	131209515	ENSG00000204603.6|LINC01257|lncRNA|chr12:131209255:131209515:+	0	+
#Deleted in new
chr12	131212204	131212931	ENSG00000204603.6|LINC01257|lncRNA|chr12:131212204:131212931:+	0	+
#Deleted in new
chr12	131235510	131237523	ENSG00000280217.1|AC126564.1|lncRNA|chr12:131235510:131237523:+	0	+
#Deleted in new
chr1	213125765	213125843	ENSG00000136643.11|RPS6KC1|pc|chr1:213125765:213125843:+	0	+
#Deleted in new
chr12	131295521	131298218	ENSG00000279746.1|AC092850.2|lncRNA|chr12:131295521:131298218:+	0	+
#Deleted in new
chr12	131296109	131297036	ENSG00000248703.2|LINC02415|lncRNA|chr12:131296109:131297036:-	0	-
#Deleted in new
chr12	131297584	131297972	ENSG00000248703.2|LINC02415|lncRNA|chr12:131297584:131297972:-	0	-
#Deleted in new
chr12	131347469	131347661	ENSG00000230294.4|LINC02370|lncRNA|chr12:131347469:131347661:+	0	+
#Deleted in new
chr12	131349327	131349544	ENSG00000230294.4|LINC02370|lncRNA|chr12:131349327:131349544:+	0	+
#Deleted in new
chr12	131365955	131367555	ENSG00000230294.4|LINC02370|lncRNA|chr12:131365955:131367555:+	0	+
#Deleted in new
chr12	131366659	131366747	ENSG00000256484.1|AC140118.1|lncRNA|chr12:131366659:131366747:+	0	+
#Partially deleted in new
chr12	131370615	131371059	ENSG00000256484.1|AC140118.1|lncRNA|chr12:131370615:131371059:+	0	+
#Deleted in new
chr12	13141480	13142521	ENSG00000084444.13|FAM234B|pc|chr12:13141480:13142521:+	0	+
#Deleted in new
chr12	131436446	131436960	ENSG00000280319.1|AC073578.4|lncRNA|chr12:131436446:131436960:+	0	+
#Deleted in new
chr12	131447336	131447532	ENSG00000275232.1|AC073578.2|lncRNA|chr12:131447336:131447532:-	0	-
#Deleted in new
chr12	131447861	131447970	ENSG00000275232.1|AC073578.2|lncRNA|chr12:131447861:131447970:-	0	-
#Deleted in new
chr12	131455145	131455211	ENSG00000275232.1|AC073578.2|lncRNA|chr12:131455145:131455211:-	0	-
#Deleted in new
chr12	131455397	131455436	ENSG00000275232.1|AC073578.2|lncRNA|chr12:131455397:131455436:-	0	-
#Deleted in new
chr12	131469310	131469456	ENSG00000256209.1|AC073578.1|lncRNA|chr12:131469310:131469456:-	0	-
#Deleted in new
chr12	131474306	131474458	ENSG00000256209.1|AC073578.1|lncRNA|chr12:131474306:131474458:-	0	-
#Partially deleted in new
chr12	131478843	131483034	ENSG00000279388.1|AC073578.3|lncRNA|chr12:131478843:131483034:-	0	-
#Partially deleted in new
chr12	131622818	131623203	ENSG00000256258.1|AC117500.4|lncRNA|chr12:131622818:131623203:-	0	-
#Partially deleted in new
chr12	131647112	131647529	ENSG00000256424.1|LINC02414|lncRNA|chr12:131647112:131647529:-	0	-
#Deleted in new
chr12	131648044	131648121	ENSG00000256424.1|LINC02414|lncRNA|chr12:131648044:131648121:-	0	-
#Deleted in new
chr12	131662595	131663229	ENSG00000249926.2|AC117500.2|lncRNA|chr12:131662595:131663229:+	0	+
#Deleted in new
chr12	131663777	131664704	ENSG00000249926.2|AC117500.2|lncRNA|chr12:131663777:131664704:+	0	+
#Deleted in new
chr12	131723257	131723309	ENSG00000061936.9|SFSWAP|pc|chr12:131723257:131723309:+	0	+
#Partially deleted in new
chr12	131756965	131757531	ENSG00000255933.1|AC117500.3|lncRNA|chr12:131756965:131757531:-	0	-
#Partially deleted in new
chr12	131796117	131797360	ENSG00000061936.9|SFSWAP|pc|chr12:131796117:131797360:+	0	+
#Deleted in new
chr12	131844535	131844633	ENSG00000198598.6|MMP17|pc|chr12:131844535:131844633:+	0	+
#Deleted in new
chr12	131857419	131857492	ENSG00000256955.2|AC131009.2|lncRNA|chr12:131857419:131857492:+	0	+
#Deleted in new
chr12	131863050	131863156	ENSG00000256955.2|AC131009.2|lncRNA|chr12:131863050:131863156:+	0	+
#Deleted in new
chr12	131863947	131864538	ENSG00000256955.2|AC131009.2|lncRNA|chr12:131863947:131864538:+	0	+
#Partially deleted in new
chr12	131906489	131906924	ENSG00000177169.9|ULK1|pc|chr12:131906489:131906924:+	0	+
#Deleted in new
chr12	131924735	131924766	ENSG00000255992.1|AC131009.1|lncRNA|chr12:131924735:131924766:-	0	-
#Partially deleted in new
chr12	131931514	131932312	ENSG00000177192.13|PUS1|pc|chr12:131931514:131932312:+	0	+
#Deleted in new
chr12	131932721	131932833	ENSG00000177192.13|PUS1|pc|chr12:131932721:131932833:+	0	+
#Deleted in new
chr12	131934641	131934928	ENSG00000273568.1|AC131009.3|lncRNA|chr12:131934641:131934928:+	0	+
#Partially deleted in new
chr12	131943538	131945896	ENSG00000177192.13|PUS1|pc|chr12:131943538:131945896:+	0	+
#Partially deleted in new
chr12	132068098	132069641	ENSG00000183495.13|EP400|pc|chr12:132068098:132069641:+	0	+
#Partially deleted in new
chr12	132077400	132078910	ENSG00000183495.13|EP400|pc|chr12:132077400:132078910:+	0	+
#Partially deleted in new
chr12	132077400	132078913	ENSG00000183495.13|EP400|pc|chr12:132077400:132078913:+	0	+
#Partially deleted in new
chr12	132077400	132080457	ENSG00000183495.13|EP400|pc|chr12:132077400:132080457:+	0	+
#Partially deleted in new
chr12	132077400	132080466	ENSG00000183495.13|EP400|pc|chr12:132077400:132080466:+	0	+
#Partially deleted in new
chr12	132077400	132081102	ENSG00000183495.13|EP400|pc|chr12:132077400:132081102:+	0	+
#Deleted in new
chr12	132077802	132078114	ENSG00000257000.1|AC137590.1|lncRNA|chr12:132077802:132078114:-	0	-
#Deleted in new
chr12	132083539	132083779	ENSG00000274670.1|AC137590.2|lncRNA|chr12:132083539:132083779:-	0	-
#Deleted in new
chr12	132100012	132100820	ENSG00000279640.1|AC138466.5|lncRNA|chr12:132100012:132100820:-	0	-
#Partially deleted in new
chr12	132136593	132139298	ENSG00000185163.9|DDX51|pc|chr12:132136593:132139298:-	0	-
#Partially deleted in new
chr12	132137434	132139298	ENSG00000185163.9|DDX51|pc|chr12:132137434:132139298:-	0	-
#Partially deleted in new
chr12	132139112	132139298	ENSG00000185163.9|DDX51|pc|chr12:132139112:132139298:-	0	-
#Deleted in new
chr12	132146239	132146365	ENSG00000184967.6|NOC4L|pc|chr12:132146239:132146365:+	0	+
#Deleted in new
chr12	132169822	132170043	ENSG00000276693.1|AC138466.3|lncRNA|chr12:132169822:132170043:+	0	+
#Deleted in new
chr12	132189178	132189695	ENSG00000256576.2|LINC02361|lncRNA|chr12:132189178:132189695:-	0	-
#Deleted in new
chr12	132190212	132190333	ENSG00000256312.1|AC138466.1|lncRNA|chr12:132190212:132190333:+	0	+
#Deleted in new
chr12	132190727	132190997	ENSG00000256312.1|AC138466.1|lncRNA|chr12:132190727:132190997:+	0	+
#Deleted in new
chr12	132205362	132205711	ENSG00000182870.12|GALNT9|pc|chr12:132205362:132205711:-	0	-
#Deleted in new
chr12	132205362	132205802	ENSG00000182870.12|GALNT9|pc|chr12:132205362:132205802:-	0	-
#Deleted in new
chr12	132205560	132205711	ENSG00000182870.12|GALNT9|pc|chr12:132205560:132205711:-	0	-
#Deleted in new
chr12	132205560	132205792	ENSG00000182870.12|GALNT9|pc|chr12:132205560:132205792:-	0	-
#Deleted in new
chr12	132205922	132206028	ENSG00000182870.12|GALNT9|pc|chr12:132205922:132206028:-	0	-
#Deleted in new
chr12	132205922	132206159	ENSG00000182870.12|GALNT9|pc|chr12:132205922:132206159:-	0	-
#Deleted in new
chr12	132240506	132240728	ENSG00000182870.12|GALNT9|pc|chr12:132240506:132240728:-	0	-
#Partially deleted in new
chr12	132272692	132275224	ENSG00000182870.12|GALNT9|pc|chr12:132272692:132275224:-	0	-
#Deleted in new
chr12	132275014	132275218	ENSG00000182870.12|GALNT9|pc|chr12:132275014:132275218:-	0	-
#Deleted in new
chr12	132275390	132275836	ENSG00000256943.1|AC148477.3|lncRNA|chr12:132275390:132275836:+	0	+
#Deleted in new
chr12	132275443	132275836	ENSG00000256943.1|AC148477.3|lncRNA|chr12:132275443:132275836:+	0	+
#Partially deleted in new
chr12	132276230	132276506	ENSG00000256943.1|AC148477.3|lncRNA|chr12:132276230:132276506:+	0	+
#Partially deleted in new
chr12	132276230	132276530	ENSG00000256943.1|AC148477.3|lncRNA|chr12:132276230:132276530:+	0	+
#Partially deleted in new
chr12	132277256	132278329	ENSG00000256943.1|AC148477.3|lncRNA|chr12:132277256:132278329:+	0	+
#Deleted in new
chr12	132277348	132277906	ENSG00000256542.2|AC148477.2|lncRNA|chr12:132277348:132277906:+	0	+
#Partially deleted in new
chr12	132278419	132280900	ENSG00000256542.2|AC148477.2|lncRNA|chr12:132278419:132280900:+	0	+
#Deleted in new
chr12	132279255	132280900	ENSG00000278872.1|AC148477.5|lncRNA|chr12:132279255:132280900:-	0	-
#Deleted in new
chr12	132282813	132284606	ENSG00000277011.1|AC148477.4|lncRNA|chr12:132282813:132284606:+	0	+
#Deleted in new
chr12	132283163	132283417	ENSG00000182870.12|GALNT9|pc|chr12:132283163:132283417:-	0	-
#Deleted in new
chr12	132283528	132283608	ENSG00000182870.12|GALNT9|pc|chr12:132283528:132283608:-	0	-
#Partially deleted in new
chr12	132351854	132352322	ENSG00000279704.1|AC148477.8|lncRNA|chr12:132351854:132352322:+	0	+
#Partially deleted in new
chr12	132360733	132361198	ENSG00000279023.1|AC148477.6|lncRNA|chr12:132360733:132361198:+	0	+
#Deleted in new
chr12	132362809	132363348	ENSG00000280150.1|AC148477.9|lncRNA|chr12:132362809:132363348:+	0	+
#Deleted in new
chr12	132457159	132457403	ENSG00000256783.1|AC079031.1|lncRNA|chr12:132457159:132457403:+	0	+
#Deleted in new
chr12	132459233	132460024	ENSG00000256783.1|AC079031.1|lncRNA|chr12:132459233:132460024:+	0	+
#Deleted in new
chr12	132462241	132462856	ENSG00000256875.2|AC079031.2|lncRNA|chr12:132462241:132462856:+	0	+
#Deleted in new
chr12	132507029	132507085	ENSG00000112787.12|FBRSL1|pc|chr12:132507029:132507085:+	0	+
#Deleted in new
chr12	132507251	132507388	ENSG00000112787.12|FBRSL1|pc|chr12:132507251:132507388:+	0	+
#Partially deleted in new
chr12	132550728	132554947	ENSG00000280287.1|AC131212.3|lncRNA|chr12:132550728:132554947:+	0	+
#Partially deleted in new
chr12	132565070	132566425	ENSG00000279700.1|AC131212.2|lncRNA|chr12:132565070:132566425:+	0	+
#Deleted in new
chr12	132593030	132593698	ENSG00000277186.1|AC131212.1|lncRNA|chr12:132593030:132593698:-	0	-
#Deleted in new
chr12	132603149	132603404	ENSG00000204583.9|LRCOL1|pc|chr12:132603149:132603404:-	0	-
#Deleted in new
chr12	132603168	132603404	ENSG00000204583.9|LRCOL1|pc|chr12:132603168:132603404:-	0	-
#Deleted in new
chr12	132605813	132606264	ENSG00000204583.9|LRCOL1|pc|chr12:132605813:132606264:-	0	-
#Deleted in new
chr12	132606146	132606264	ENSG00000204583.9|LRCOL1|pc|chr12:132606146:132606264:-	0	-
#Deleted in new
chr12	132610322	132610374	ENSG00000204583.9|LRCOL1|pc|chr12:132610322:132610374:-	0	-
#Deleted in new
chr12	132610322	132610397	ENSG00000204583.9|LRCOL1|pc|chr12:132610322:132610397:-	0	-
#Deleted in new
chr12	132610322	132610451	ENSG00000204583.9|LRCOL1|pc|chr12:132610322:132610451:-	0	-
#Deleted in new
chr12	132610322	132610543	ENSG00000204583.9|LRCOL1|pc|chr12:132610322:132610543:-	0	-
#Partially deleted in new
chr12	132623752	132624810	ENSG00000177084.16|POLE|pc|chr12:132623752:132624810:-	0	-
#Partially deleted in new
chr12	132623761	132624810	ENSG00000177084.16|POLE|pc|chr12:132623761:132624810:-	0	-
#Partially deleted in new
chr12	132638013	132639169	ENSG00000177084.16|POLE|pc|chr12:132638013:132639169:-	0	-
#Deleted in new
chr12	132641017	132641378	ENSG00000177084.16|POLE|pc|chr12:132641017:132641378:-	0	-
#Deleted in new
chr12	132650282	132651407	ENSG00000177084.16|POLE|pc|chr12:132650282:132651407:-	0	-
#Partially deleted in new
chr12	132657867	132658674	ENSG00000177084.16|POLE|pc|chr12:132657867:132658674:-	0	-
#Partially deleted in new
chr12	132659294	132660913	ENSG00000177084.16|POLE|pc|chr12:132659294:132660913:-	0	-
#Partially deleted in new
chr12	132701249	132701684	ENSG00000176894.9|PXMP2|pc|chr12:132701249:132701684:+	0	+
#Deleted in new
chr12	132702428	132702564	ENSG00000176894.9|PXMP2|pc|chr12:132702428:132702564:+	0	+
#Partially deleted in new
chr12	132711081	132711689	ENSG00000247077.6|PGAM5|pc|chr12:132711081:132711689:+	0	+
#Deleted in new
chr12	132718761	132719166	ENSG00000247077.6|PGAM5|pc|chr12:132718761:132719166:+	0	+
#Split in new
chr12	132729678	132732210	ENSG00000176915.14|ANKLE2|pc|chr12:132729678:132732210:-	0	-
#Deleted in new
chr12	132730689	132732100	ENSG00000176915.14|ANKLE2|pc|chr12:132730689:132732100:-	0	-
#Deleted in new
chr12	132733995	132734071	ENSG00000176915.14|ANKLE2|pc|chr12:132733995:132734071:-	0	-
#Partially deleted in new
chr12	132736892	132738907	ENSG00000176915.14|ANKLE2|pc|chr12:132736892:132738907:-	0	-
#Deleted in new
chr12	132748886	132749027	ENSG00000176915.14|ANKLE2|pc|chr12:132748886:132749027:-	0	-
#Partially deleted in new
chr12	132754674	132761813	ENSG00000176915.14|ANKLE2|pc|chr12:132754674:132761813:-	0	-
#Partially deleted in new
chr12	132827807	132827902	ENSG00000090615.14|GOLGA3|pc|chr12:132827807:132827902:-	0	-
#Partially deleted in new
chr12	132827823	132827902	ENSG00000090615.14|GOLGA3|pc|chr12:132827823:132827902:-	0	-
#Partially deleted in new
chr12	132832356	132841596	ENSG00000072609.17|CHFR|pc|chr12:132832356:132841596:-	0	-
#Partially deleted in new
chr12	132848640	132849960	ENSG00000072609.17|CHFR|pc|chr12:132848640:132849960:-	0	-
#Partially deleted in new
chr12	132853430	132854104	ENSG00000072609.17|CHFR|pc|chr12:132853430:132854104:-	0	-
#Deleted in new
chr12	132853636	132853715	ENSG00000072609.17|CHFR|pc|chr12:132853636:132853715:-	0	-
#Deleted in new
chr12	132854242	132855055	ENSG00000072609.17|CHFR|pc|chr12:132854242:132855055:-	0	-
#Deleted in new
chr12	132862332	132862425	ENSG00000072609.17|CHFR|pc|chr12:132862332:132862425:-	0	-
#Deleted in new
chr12	132865854	132867958	ENSG00000278949.1|AC127070.5|lncRNA|chr12:132865854:132867958:-	0	-
#Deleted in new
chr12	132882929	132883017	ENSG00000072609.17|CHFR|pc|chr12:132882929:132883017:-	0	-
#Partially deleted in new
chr12	132887841	132887932	ENSG00000236617.2|AC127070.2|lncRNA|chr12:132887841:132887932:+	0	+
#Deleted in new
chr12	132888119	132888583	ENSG00000236617.2|AC127070.2|lncRNA|chr12:132888119:132888583:+	0	+
#Deleted in new
chr12	132898999	132899213	ENSG00000072609.17|CHFR|pc|chr12:132898999:132899213:-	0	-
#Deleted in new
chr12	132904797	132904873	ENSG00000072609.17|CHFR|pc|chr12:132904797:132904873:-	0	-
#Deleted in new
chr12	132904797	132904894	ENSG00000072609.17|CHFR|pc|chr12:132904797:132904894:-	0	-
#Deleted in new
chr12	132908775	132909147	ENSG00000072609.17|CHFR|pc|chr12:132908775:132909147:-	0	-
#Deleted in new
chr12	132908775	132909186	ENSG00000072609.17|CHFR|pc|chr12:132908775:132909186:-	0	-
#Deleted in new
chr12	132911469	132914732	ENSG00000250790.4|AC127070.3|lncRNA|chr12:132911469:132914732:+	0	+
#Partially deleted in new
chr12	132918307	132927162	ENSG00000196458.10|ZNF605|pc|chr12:132918307:132927162:-	0	-
#Partially deleted in new
chr12	132944797	132945797	ENSG00000196458.10|ZNF605|pc|chr12:132944797:132945797:-	0	-
#Deleted in new
chr12	132948147	132948270	ENSG00000196458.10|ZNF605|pc|chr12:132948147:132948270:-	0	-
#Deleted in new
chr12	132948147	132948615	ENSG00000196458.10|ZNF605|pc|chr12:132948147:132948615:-	0	-
#Deleted in new
chr12	132956242	132956262	ENSG00000196458.10|ZNF605|pc|chr12:132956242:132956262:-	0	-
#Deleted in new
chr12	132956242	132956291	ENSG00000196458.10|ZNF605|pc|chr12:132956242:132956291:-	0	-
#Deleted in new
chr12	132956242	132956304	ENSG00000072609.17|CHFR|pc|chr12:132956242:132956304:-	0	-
#Deleted in new
chr12	132956242	132956306	ENSG00000196458.10|ZNF605|pc|chr12:132956242:132956306:-	0	-
#Deleted in new
chr12	132986364	132986873	ENSG00000198393.7|ZNF26|pc|chr12:132986364:132986873:+	0	+
#Deleted in new
chr12	132986417	132986873	ENSG00000198393.7|ZNF26|pc|chr12:132986417:132986873:+	0	+
#Deleted in new
chr12	132986442	132986873	ENSG00000198393.7|ZNF26|pc|chr12:132986442:132986873:+	0	+
#Deleted in new
chr12	132986463	132986873	ENSG00000198393.7|ZNF26|pc|chr12:132986463:132986873:+	0	+
#Deleted in new
chr12	132986467	132986873	ENSG00000198393.7|ZNF26|pc|chr12:132986467:132986873:+	0	+
#Deleted in new
chr12	132987664	132987768	ENSG00000198393.7|ZNF26|pc|chr12:132987664:132987768:+	0	+
#Deleted in new
chr12	133001632	133001731	ENSG00000198393.7|ZNF26|pc|chr12:133001632:133001731:+	0	+
#Split in new
chr12	133004403	133007168	ENSG00000198393.7|ZNF26|pc|chr12:133004403:133007168:+	0	+
#Deleted in new
chr12	133006056	133006176	ENSG00000198393.7|ZNF26|pc|chr12:133006056:133006176:+	0	+
#Deleted in new
chr12	133006056	133006190	ENSG00000198393.7|ZNF26|pc|chr12:133006056:133006190:+	0	+
#Partially deleted in new
chr12	133010135	133010216	ENSG00000198393.7|ZNF26|pc|chr12:133010135:133010216:+	0	+
#Split in new
chr12	133010135	133027103	ENSG00000198393.7|ZNF26|pc|chr12:133010135:133027103:+	0	+
#Deleted in new
chr12	133026551	133026718	ENSG00000198393.7|ZNF26|pc|chr12:133026551:133026718:+	0	+
#Deleted in new
chr12	133030388	133030538	ENSG00000246394.7|AC073911.1|lncRNA|chr12:133030388:133030538:-	0	-
#Split in new
chr12	133032630	133032952	ENSG00000198393.7|ZNF26|pc|chr12:133032630:133032952:+	0	+
#Deleted in new
chr12	133036768	133036911	ENSG00000246394.7|AC073911.1|lncRNA|chr12:133036768:133036911:-	0	-
#Deleted in new
chr12	133036768	133037222	ENSG00000246394.7|AC073911.1|lncRNA|chr12:133036768:133037222:-	0	-
#Deleted in new
chr12	133037291	133037545	ENSG00000198040.10|ZNF84|pc|chr12:133037291:133037545:+	0	+
#Deleted in new
chr12	133037300	133037545	ENSG00000198040.10|ZNF84|pc|chr12:133037300:133037545:+	0	+
#Deleted in new
chr12	133037389	133037545	ENSG00000198040.10|ZNF84|pc|chr12:133037389:133037545:+	0	+
#Deleted in new
chr12	133037393	133037554	ENSG00000198040.10|ZNF84|pc|chr12:133037393:133037554:+	0	+
#Deleted in new
chr12	133037478	133037545	ENSG00000198040.10|ZNF84|pc|chr12:133037478:133037545:+	0	+
#Deleted in new
chr12	133037502	133037545	ENSG00000198040.10|ZNF84|pc|chr12:133037502:133037545:+	0	+
#Deleted in new
chr12	133037524	133037554	ENSG00000198040.10|ZNF84|pc|chr12:133037524:133037554:+	0	+
#Deleted in new
chr12	133037529	133037554	ENSG00000198040.10|ZNF84|pc|chr12:133037529:133037554:+	0	+
#Deleted in new
chr12	133037579	133037969	ENSG00000198040.10|ZNF84|pc|chr12:133037579:133037969:+	0	+
#Deleted in new
chr12	133038874	133039012	ENSG00000198040.10|ZNF84|pc|chr12:133038874:133039012:+	0	+
#Deleted in new
chr12	133038887	133039047	ENSG00000198040.10|ZNF84|pc|chr12:133038887:133039047:+	0	+
#Deleted in new
chr12	133040433	133041482	ENSG00000198040.10|ZNF84|pc|chr12:133040433:133041482:+	0	+
#Deleted in new
chr12	133041099	133041482	ENSG00000198040.10|ZNF84|pc|chr12:133041099:133041482:+	0	+
#Deleted in new
chr12	133041099	133041485	ENSG00000198040.10|ZNF84|pc|chr12:133041099:133041485:+	0	+
#Deleted in new
chr12	133041277	133041482	ENSG00000198040.10|ZNF84|pc|chr12:133041277:133041482:+	0	+
#Deleted in new
chr12	133041284	133041482	ENSG00000198040.10|ZNF84|pc|chr12:133041284:133041482:+	0	+
#Split in new
chr12	133047620	133048848	ENSG00000198040.10|ZNF84|pc|chr12:133047620:133048848:+	0	+
#Deleted in new
chr12	133050523	133050586	ENSG00000198040.10|ZNF84|pc|chr12:133050523:133050586:+	0	+
#Split in new
chr12	133056953	133063297	ENSG00000198040.10|ZNF84|pc|chr12:133056953:133063297:+	0	+
#Split in new
chr12	133056953	133063298	ENSG00000198040.10|ZNF84|pc|chr12:133056953:133063298:+	0	+
#Deleted in new
chr12	133063078	133063304	ENSG00000198040.10|ZNF84|pc|chr12:133063078:133063304:+	0	+
#Deleted in new
chr12	133073515	133073983	ENSG00000279466.1|AC073911.2|lncRNA|chr12:133073515:133073983:-	0	-
#Deleted in new
chr12	133077761	133078392	ENSG00000279817.1|AC073911.3|lncRNA|chr12:133077761:133078392:-	0	-
#Deleted in new
chr12	133079837	133081072	ENSG00000196387.9|ZNF140|pc|chr12:133079837:133081072:+	0	+
#Deleted in new
chr12	133080473	133080551	ENSG00000196387.9|ZNF140|pc|chr12:133080473:133080551:+	0	+
#Deleted in new
chr12	133080821	133081072	ENSG00000196387.9|ZNF140|pc|chr12:133080821:133081072:+	0	+
#Deleted in new
chr12	133080874	133081072	ENSG00000196387.9|ZNF140|pc|chr12:133080874:133081072:+	0	+
#Deleted in new
chr12	133080881	133081072	ENSG00000196387.9|ZNF140|pc|chr12:133080881:133081072:+	0	+
#Deleted in new
chr12	133080915	133081072	ENSG00000196387.9|ZNF140|pc|chr12:133080915:133081072:+	0	+
#Deleted in new
chr12	133080931	133081072	ENSG00000196387.9|ZNF140|pc|chr12:133080931:133081072:+	0	+
#Deleted in new
chr12	133080964	133081072	ENSG00000196387.9|ZNF140|pc|chr12:133080964:133081072:+	0	+
#Deleted in new
chr12	133081010	133081072	ENSG00000196387.9|ZNF140|pc|chr12:133081010:133081072:+	0	+
#Deleted in new
chr12	133081272	133081329	ENSG00000196387.9|ZNF140|pc|chr12:133081272:133081329:+	0	+
#Deleted in new
chr12	133081531	133081613	ENSG00000196387.9|ZNF140|pc|chr12:133081531:133081613:+	0	+
#Partially deleted in new
chr12	133081584	133083229	ENSG00000196387.9|ZNF140|pc|chr12:133081584:133083229:+	0	+
#Deleted in new
chr12	133084114	133084206	ENSG00000196387.9|ZNF140|pc|chr12:133084114:133084206:+	0	+
#Deleted in new
chr12	133093414	133093505	ENSG00000196387.9|ZNF140|pc|chr12:133093414:133093505:+	0	+
#Deleted in new
chr12	133100986	133101053	ENSG00000196387.9|ZNF140|pc|chr12:133100986:133101053:+	0	+
#Deleted in new
chr12	133105509	133105568	ENSG00000196387.9|ZNF140|pc|chr12:133105509:133105568:+	0	+
#Deleted in new
chr12	133105509	133105590	ENSG00000196387.9|ZNF140|pc|chr12:133105509:133105590:+	0	+
#Deleted in new
chr12	133105509	133105626	ENSG00000196387.9|ZNF140|pc|chr12:133105509:133105626:+	0	+
#Deleted in new
chr12	133105509	133105641	ENSG00000196387.9|ZNF140|pc|chr12:133105509:133105641:+	0	+
#Deleted in new
chr12	133105509	133105713	ENSG00000196387.9|ZNF140|pc|chr12:133105509:133105713:+	0	+
#Split in new
chr12	133106816	133122024	ENSG00000214029.4|ZNF891|pc|chr12:133106816:133122024:-	0	-
#Deleted in new
chr12	133115691	133115733	ENSG00000271963.1|AC026786.2|lncRNA|chr12:133115691:133115733:+	0	+
#Deleted in new
chr12	133121990	133122340	ENSG00000271963.1|AC026786.2|lncRNA|chr12:133121990:133122340:+	0	+
#Deleted in new
chr12	133130226	133130473	ENSG00000214029.4|ZNF891|pc|chr12:133130226:133130473:-	0	-
#Deleted in new
chr12	133130574	133130754	ENSG00000256223.5|ZNF10|pc|chr12:133130574:133130754:+	0	+
#Deleted in new
chr12	133130587	133130754	ENSG00000256223.5|ZNF10|pc|chr12:133130587:133130754:+	0	+
#Deleted in new
chr12	133130591	133130754	ENSG00000256223.5|ZNF10|pc|chr12:133130591:133130754:+	0	+
#Deleted in new
chr12	133130610	133130754	ENSG00000256223.5|ZNF10|pc|chr12:133130610:133130754:+	0	+
#Deleted in new
chr12	133130610	133131014	ENSG00000256223.5|ZNF10|pc|chr12:133130610:133131014:+	0	+
#Deleted in new
chr12	133130626	133131014	ENSG00000256223.5|ZNF10|pc|chr12:133130626:133131014:+	0	+
#Deleted in new
chr12	133130836	133131014	ENSG00000256223.5|ZNF10|pc|chr12:133130836:133131014:+	0	+
#Deleted in new
chr12	133130983	133131014	ENSG00000256825.4|AC026786.1|pc|chr12:133130983:133131014:+	0	+
#Deleted in new
chr12	133139198	133139249	ENSG00000256223.5|ZNF10|pc|chr12:133139198:133139249:+	0	+
#Deleted in new
chr12	133143519	133143622	ENSG00000256223.5|ZNF10|pc|chr12:133143519:133143622:+	0	+
#Deleted in new
chr12	133143868	133144525	ENSG00000256223.5|ZNF10|pc|chr12:133143868:133144525:+	0	+
#Deleted in new
chr12	133144433	133144525	ENSG00000256223.5|ZNF10|pc|chr12:133144433:133144525:+	0	+
#Deleted in new
chr12	133144433	133144525	ENSG00000256825.4|AC026786.1|pc|chr12:133144433:133144525:+	0	+
#Deleted in new
chr12	133144903	133144966	ENSG00000256223.5|ZNF10|pc|chr12:133144903:133144966:+	0	+
#Duplicated in new
chr12	133151808	133151904	ENSG00000256223.5|ZNF10|pc|chr12:133151808:133151904:+	0	+
#Duplicated in new
chr12	133151808	133151904	ENSG00000256825.4|AC026786.1|pc|chr12:133151808:133151904:+	0	+
#Deleted in new
chr12	133181408	133181686	ENSG00000090612.20|ZNF268|pc|chr12:133181408:133181686:+	0	+
#Deleted in new
chr12	133181473	133181627	ENSG00000090612.20|ZNF268|pc|chr12:133181473:133181627:+	0	+
#Deleted in new
chr12	133181494	133181686	ENSG00000090612.20|ZNF268|pc|chr12:133181494:133181686:+	0	+
#Deleted in new
chr12	133181502	133181627	ENSG00000090612.20|ZNF268|pc|chr12:133181502:133181627:+	0	+
#Deleted in new
chr12	133181510	133181686	ENSG00000090612.20|ZNF268|pc|chr12:133181510:133181686:+	0	+
#Deleted in new
chr12	133181513	133181686	ENSG00000090612.20|ZNF268|pc|chr12:133181513:133181686:+	0	+
#Deleted in new
chr12	133181521	133181686	ENSG00000090612.20|ZNF268|pc|chr12:133181521:133181686:+	0	+
#Deleted in new
chr12	133181527	133181686	ENSG00000090612.20|ZNF268|pc|chr12:133181527:133181686:+	0	+
#Deleted in new
chr12	133181558	133181686	ENSG00000090612.20|ZNF268|pc|chr12:133181558:133181686:+	0	+
#Deleted in new
chr12	133181619	133181686	ENSG00000090612.20|ZNF268|pc|chr12:133181619:133181686:+	0	+
#Deleted in new
chr12	133181945	133182030	ENSG00000090612.20|ZNF268|pc|chr12:133181945:133182030:+	0	+
#Deleted in new
chr12	133181945	133182030	ENSG00000256825.4|AC026786.1|pc|chr12:133181945:133182030:+	0	+
#Deleted in new
chr12	133184663	133184759	ENSG00000090612.20|ZNF268|pc|chr12:133184663:133184759:+	0	+
#Deleted in new
chr12	133187864	133188072	ENSG00000090612.20|ZNF268|pc|chr12:133187864:133188072:+	0	+
#Deleted in new
chr12	133187871	133188072	ENSG00000090612.20|ZNF268|pc|chr12:133187871:133188072:+	0	+
#Deleted in new
chr12	133187871	133188072	ENSG00000256825.4|AC026786.1|pc|chr12:133187871:133188072:+	0	+
#Deleted in new
chr12	133187871	133188153	ENSG00000090612.20|ZNF268|pc|chr12:133187871:133188153:+	0	+
#Deleted in new
chr12	133193427	133193533	ENSG00000090612.20|ZNF268|pc|chr12:133193427:133193533:+	0	+
#Deleted in new
chr12	133193427	133193533	ENSG00000256825.4|AC026786.1|pc|chr12:133193427:133193533:+	0	+
#Deleted in new
chr12	133193427	133193537	ENSG00000090612.20|ZNF268|pc|chr12:133193427:133193537:+	0	+
#Duplicated in new
chr12	133202143	133202310	ENSG00000090612.20|ZNF268|pc|chr12:133202143:133202310:+	0	+
#Duplicated in new
chr12	133202143	133202348	ENSG00000090612.20|ZNF268|pc|chr12:133202143:133202348:+	0	+
#Duplicated in new
chr12	133202143	133202350	ENSG00000090612.20|ZNF268|pc|chr12:133202143:133202350:+	0	+
#Duplicated in new
chr12	133202143	133202369	ENSG00000256825.4|AC026786.1|pc|chr12:133202143:133202369:+	0	+
#Split in new
chr12	133202143	133202440	ENSG00000090612.20|ZNF268|pc|chr12:133202143:133202440:+	0	+
#Split in new
chr12	133202143	133214831	ENSG00000090612.20|ZNF268|pc|chr12:133202143:133214831:+	0	+
#Deleted in new
chr12	133218311	133218971	ENSG00000227059.6|ANHX|pc|chr12:133218311:133218971:-	0	-
#Deleted in new
chr12	133219282	133219367	ENSG00000227059.6|ANHX|pc|chr12:133219282:133219367:-	0	-
#Deleted in new
chr12	133221204	133221333	ENSG00000227059.6|ANHX|pc|chr12:133221204:133221333:-	0	-
#Deleted in new
chr12	133226317	133226438	ENSG00000227059.6|ANHX|pc|chr12:133226317:133226438:-	0	-
#Deleted in new
chr12	133226935	133227152	ENSG00000227059.6|ANHX|pc|chr12:133226935:133227152:-	0	-
#Deleted in new
chr12	133227823	133227947	ENSG00000227059.6|ANHX|pc|chr12:133227823:133227947:-	0	-
#Deleted in new
chr12	133231516	133231644	ENSG00000227059.6|ANHX|pc|chr12:133231516:133231644:-	0	-
#Partially deleted in new
chr12	133234107	133236095	ENSG00000227059.6|ANHX|pc|chr12:133234107:133236095:-	0	-
#Deleted in new
chr12	133235806	133235836	ENSG00000227059.6|ANHX|pc|chr12:133235806:133235836:-	0	-
#Deleted in new
chr12	13387063	13387167	ENSG00000180861.9|LINC01559|lncRNA|chr12:13387063:13387167:-	0	-
#Deleted in new
chr12	13544140	13544540	ENSG00000277935.1|AC007527.2|lncRNA|chr12:13544140:13544540:+	0	+
#Deleted in new
chr1	213546282	213546447	ENSG00000225233.1|AL592402.1|lncRNA|chr1:213546282:213546447:+	0	+
#Deleted in new
chr1	213731415	213731558	ENSG00000228255.1|AC096639.1|lncRNA|chr1:213731415:213731558:+	0	+
#Deleted in new
chr12	137410	137627	ENSG00000249695.6|AC026369.1|lncRNA|chr12:137410:137627:-	0	-
#Deleted in new
chr12	1380059	1381233	ENSG00000249028.2|AC004672.1|lncRNA|chr12:1380059:1381233:-	0	-
#Deleted in new
chr1	213832521	213832622	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213832521:213832622:-	0	-
#Deleted in new
chr1	213832540	213832622	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213832540:213832622:-	0	-
#Deleted in new
chr1	213832540	213832648	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213832540:213832648:-	0	-
#Deleted in new
chr1	213832590	213832622	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213832590:213832622:-	0	-
#Deleted in new
chr1	213832590	213832648	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213832590:213832648:-	0	-
#Deleted in new
chr1	213832591	213832622	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213832591:213832622:-	0	-
#Deleted in new
chr1	213832592	213832622	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213832592:213832622:-	0	-
#Deleted in new
chr1	213832596	213832622	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213832596:213832622:-	0	-
#Deleted in new
chr1	213832600	213832622	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213832600:213832622:-	0	-
#Deleted in new
chr1	213835852	213836054	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213835852:213836054:-	0	-
#Deleted in new
chr1	213839737	213839797	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213839737:213839797:-	0	-
#Deleted in new
chr1	213840092	213840196	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213840092:213840196:-	0	-
#Deleted in new
chr12	1385832	1386002	ENSG00000267285.1|AC004672.2|lncRNA|chr12:1385832:1386002:+	0	+
#Deleted in new
chr12	1386583	1386987	ENSG00000267285.1|AC004672.2|lncRNA|chr12:1386583:1386987:+	0	+
#Deleted in new
chr12	1390588	1391502	ENSG00000249028.2|AC004672.1|lncRNA|chr12:1390588:1391502:-	0	-
#Deleted in new
chr1	213915934	213915978	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213915934:213915978:-	0	-
#Deleted in new
chr1	213915934	213916099	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213915934:213916099:-	0	-
#Deleted in new
chr1	213916072	213916099	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213916072:213916099:-	0	-
#Deleted in new
chr1	213937126	213937164	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213937126:213937164:-	0	-
#Deleted in new
chr1	213937253	213937421	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213937253:213937421:-	0	-
#Deleted in new
chr1	213937253	213937423	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213937253:213937423:-	0	-
#Deleted in new
chr1	213955022	213955239	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213955022:213955239:-	0	-
#Deleted in new
chr1	213965303	213965432	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213965303:213965432:-	0	-
#Deleted in new
chr1	213965303	213965465	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213965303:213965465:-	0	-
#Deleted in new
chr1	213965303	213965481	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213965303:213965481:-	0	-
#Deleted in new
chr1	213966717	213966835	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213966717:213966835:-	0	-
#Deleted in new
chr1	213966717	213966931	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213966717:213966931:-	0	-
#Deleted in new
chr1	213966717	213967171	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213966717:213967171:-	0	-
#Partially deleted in new
chr1	213979310	213979385	ENSG00000230461.8|PROX1-AS1|lncRNA|chr1:213979310:213979385:-	0	-
#Deleted in new
chr1	214055355	214055472	ENSG00000283518.1|AL592287.1|lncRNA|chr1:214055355:214055472:-	0	-
#Partially deleted in new
chr1	2141083	2145279	ENSG00000271806.1|AL590822.2|lncRNA|chr1:2141083:2145279:-	0	-
#Deleted in new
chr1	21415897	21415935	ENSG00000236009.1|AL592309.2|lncRNA|chr1:21415897:21415935:+	0	+
#Deleted in new
chr1	21416321	21416619	ENSG00000236009.1|AL592309.2|lncRNA|chr1:21416321:21416619:+	0	+
#Deleted in new
chr1	21416325	21416619	ENSG00000236009.1|AL592309.2|lncRNA|chr1:21416325:21416619:+	0	+
#Deleted in new
chr1	21416971	21417121	ENSG00000236009.1|AL592309.2|lncRNA|chr1:21416971:21417121:+	0	+
#Deleted in new
chr1	21417217	21417374	ENSG00000236009.1|AL592309.2|lncRNA|chr1:21417217:21417374:+	0	+
#Deleted in new
chr1	21417217	21417492	ENSG00000236009.1|AL592309.2|lncRNA|chr1:21417217:21417492:+	0	+
#Deleted in new
chr12	14216589	14216793	ENSG00000256084.1|AC092112.1|lncRNA|chr12:14216589:14216793:+	0	+
#Deleted in new
chr12	14220861	14221297	ENSG00000256084.1|AC092112.1|lncRNA|chr12:14220861:14221297:+	0	+
#Deleted in new
chr12	1430276	1430798	ENSG00000082805.19|ERC1|pc|chr12:1430276:1430798:+	0	+
#Deleted in new
chr1	214344171	214344410	ENSG00000228470.1|AL929236.1|lncRNA|chr1:214344171:214344410:-	0	-
#Deleted in new
chr1	214348185	214348313	ENSG00000228470.1|AL929236.1|lncRNA|chr1:214348185:214348313:-	0	-
#Deleted in new
chr12	14420301	14420446	ENSG00000171681.12|ATF7IP|pc|chr12:14420301:14420446:+	0	+
#Deleted in new
chr1	21442239	21442358	ENSG00000142794.18|NBPF3|pc|chr1:21442239:21442358:+	0	+
#Deleted in new
chr1	21444943	21445219	ENSG00000142794.18|NBPF3|pc|chr1:21444943:21445219:+	0	+
#Deleted in new
chr1	21444947	21445219	ENSG00000142794.18|NBPF3|pc|chr1:21444947:21445219:+	0	+
#Deleted in new
chr1	21444991	21445219	ENSG00000142794.18|NBPF3|pc|chr1:21444991:21445219:+	0	+
#Deleted in new
chr1	21446036	21446482	ENSG00000142794.18|NBPF3|pc|chr1:21446036:21446482:+	0	+
#Partially deleted in new
chr12	14475889	14476432	ENSG00000171681.12|ATF7IP|pc|chr12:14475889:14476432:+	0	+
#Deleted in new
chr1	21449790	21449888	ENSG00000142794.18|NBPF3|pc|chr1:21449790:21449888:+	0	+
#Deleted in new
chr1	21449858	21449888	ENSG00000142794.18|NBPF3|pc|chr1:21449858:21449888:+	0	+
#Split in new
chr1	214528275	214533407	ENSG00000152104.11|PTPN14|pc|chr1:214528275:214533407:-	0	-
#Deleted in new
chr12	14530150	14530241	ENSG00000255649.1|AC008114.1|lncRNA|chr12:14530150:14530241:+	0	+
#Deleted in new
chr12	14531041	14531210	ENSG00000255649.1|AC008114.1|lncRNA|chr12:14531041:14531210:+	0	+
#Deleted in new
chr12	14533062	14533229	ENSG00000255649.1|AC008114.1|lncRNA|chr12:14533062:14533229:+	0	+
#Deleted in new
chr12	14554153	14554246	ENSG00000121316.10|PLBD1|pc|chr12:14554153:14554246:-	0	-
#Deleted in new
chr1	214603483	214603648	ENSG00000117724.12|CENPF|pc|chr1:214603483:214603648:+	0	+
#Deleted in new
chr1	214647966	214647979	ENSG00000117724.12|CENPF|pc|chr1:214647966:214647979:+	0	+
#Deleted in new
chr1	214651709	214651886	ENSG00000117724.12|CENPF|pc|chr1:214651709:214651886:+	0	+
#Deleted in new
chr1	214652827	214652989	ENSG00000117724.12|CENPF|pc|chr1:214652827:214652989:+	0	+
#Deleted in new
chr1	214653484	214653493	ENSG00000117724.12|CENPF|pc|chr1:214653484:214653493:+	0	+
#Deleted in new
chr1	214653484	214654419	ENSG00000117724.12|CENPF|pc|chr1:214653484:214654419:+	0	+
#Deleted in new
chr1	21466086	21466156	ENSG00000142794.18|NBPF3|pc|chr1:21466086:21466156:+	0	+
#Deleted in new
chr12	14665654	14665697	ENSG00000214772.2|AC010168.1|lncRNA|chr12:14665654:14665697:+	0	+
#Deleted in new
chr12	14665858	14666013	ENSG00000214772.2|AC010168.1|lncRNA|chr12:14665858:14666013:+	0	+
#Deleted in new
chr1	21466995	21467309	ENSG00000142794.18|NBPF3|pc|chr1:21466995:21467309:+	0	+
#Deleted in new
chr1	21467181	21467309	ENSG00000142794.18|NBPF3|pc|chr1:21467181:21467309:+	0	+
#Deleted in new
chr1	21468154	21468334	ENSG00000142794.18|NBPF3|pc|chr1:21468154:21468334:+	0	+
#Deleted in new
chr1	21468440	21468585	ENSG00000142794.18|NBPF3|pc|chr1:21468440:21468585:+	0	+
#Deleted in new
chr1	21468549	21468585	ENSG00000142794.18|NBPF3|pc|chr1:21468549:21468585:+	0	+
#Deleted in new
chr1	21468687	21468894	ENSG00000142794.18|NBPF3|pc|chr1:21468687:21468894:+	0	+
#Deleted in new
chr1	21468687	21468897	ENSG00000142794.18|NBPF3|pc|chr1:21468687:21468897:+	0	+
#Deleted in new
chr1	21470631	21470734	ENSG00000142794.18|NBPF3|pc|chr1:21470631:21470734:+	0	+
#Deleted in new
chr1	21471568	21471783	ENSG00000142794.18|NBPF3|pc|chr1:21471568:21471783:+	0	+
#Deleted in new
chr12	14718034	14718075	ENSG00000214772.2|AC010168.1|lncRNA|chr12:14718034:14718075:+	0	+
#Deleted in new
chr1	21472842	21472915	ENSG00000142794.18|NBPF3|pc|chr1:21472842:21472915:+	0	+
#Deleted in new
chr1	21473376	21473585	ENSG00000142794.18|NBPF3|pc|chr1:21473376:21473585:+	0	+
#Deleted in new
chr1	21473379	21473585	ENSG00000142794.18|NBPF3|pc|chr1:21473379:21473585:+	0	+
#Deleted in new
chr1	21473394	21473585	ENSG00000142794.18|NBPF3|pc|chr1:21473394:21473585:+	0	+
#Deleted in new
chr1	21474899	21474951	ENSG00000142794.18|NBPF3|pc|chr1:21474899:21474951:+	0	+
#Deleted in new
chr12	14757594	14757963	ENSG00000214772.2|AC010168.1|lncRNA|chr12:14757594:14757963:+	0	+
#Partially deleted in new
chr12	14762503	14767931	ENSG00000261324.2|AC010168.2|lncRNA|chr12:14762503:14767931:-	0	-
#Deleted in new
chr12	14767998	14769463	ENSG00000197837.3|HIST4H4|pc|chr12:14767998:14769463:-	0	-
#Deleted in new
chr12	14768157	14768201	ENSG00000197837.3|HIST4H4|pc|chr12:14768157:14768201:-	0	-
#Deleted in new
chr12	14768924	14769463	ENSG00000197837.3|HIST4H4|pc|chr12:14768924:14769463:-	0	-
#Deleted in new
chr12	14768938	14769009	ENSG00000197837.3|HIST4H4|pc|chr12:14768938:14769009:-	0	-
#Deleted in new
chr12	14768995	14769457	ENSG00000197837.3|HIST4H4|pc|chr12:14768995:14769457:-	0	-
#Deleted in new
chr12	14769294	14769622	ENSG00000197837.3|HIST4H4|pc|chr12:14769294:14769622:-	0	-
#Deleted in new
chr12	14769899	14770170	ENSG00000197837.3|HIST4H4|pc|chr12:14769899:14770170:-	0	-
#Deleted in new
chr12	14769899	14770276	ENSG00000197837.3|HIST4H4|pc|chr12:14769899:14770276:-	0	-
#Deleted in new
chr1	21478068	21478196	ENSG00000142794.18|NBPF3|pc|chr1:21478068:21478196:+	0	+
#Deleted in new
chr1	21478143	21478196	ENSG00000142794.18|NBPF3|pc|chr1:21478143:21478196:+	0	+
#Deleted in new
chr1	21478143	21478227	ENSG00000142794.18|NBPF3|pc|chr1:21478143:21478227:+	0	+
#Deleted in new
chr1	21478143	21478307	ENSG00000142794.18|NBPF3|pc|chr1:21478143:21478307:+	0	+
#Deleted in new
chr1	21479348	21479400	ENSG00000142794.18|NBPF3|pc|chr1:21479348:21479400:+	0	+
#Deleted in new
chr1	21480050	21480221	ENSG00000142794.18|NBPF3|pc|chr1:21480050:21480221:+	0	+
#Deleted in new
chr1	21480050	21480223	ENSG00000142794.18|NBPF3|pc|chr1:21480050:21480223:+	0	+
#Deleted in new
chr12	1480842	1480898	ENSG00000082805.19|ERC1|pc|chr12:1480842:1480898:+	0	+
#Deleted in new
chr1	21480929	21480981	ENSG00000142794.18|NBPF3|pc|chr1:21480929:21480981:+	0	+
#Deleted in new
chr1	21481596	21481769	ENSG00000142794.18|NBPF3|pc|chr1:21481596:21481769:+	0	+
#Deleted in new
chr1	21482483	21482535	ENSG00000142794.18|NBPF3|pc|chr1:21482483:21482535:+	0	+
#Deleted in new
chr1	21483142	21483307	ENSG00000142794.18|NBPF3|pc|chr1:21483142:21483307:+	0	+
#Deleted in new
chr1	21483142	21483318	ENSG00000142794.18|NBPF3|pc|chr1:21483142:21483318:+	0	+
#Deleted in new
chr1	21483142	21483412	ENSG00000142794.18|NBPF3|pc|chr1:21483142:21483412:+	0	+
#Deleted in new
chr1	21483142	21483467	ENSG00000142794.18|NBPF3|pc|chr1:21483142:21483467:+	0	+
#Deleted in new
chr1	21483142	21484900	ENSG00000142794.18|NBPF3|pc|chr1:21483142:21484900:+	0	+
#Deleted in new
chr1	21483142	21485005	ENSG00000142794.18|NBPF3|pc|chr1:21483142:21485005:+	0	+
#Deleted in new
chr12	14844494	14844708	ENSG00000256339.1|AC007655.1|lncRNA|chr12:14844494:14844708:+	0	+
#Deleted in new
chr12	14899168	14899290	ENSG00000182993.3|C12orf60|pc|chr12:14899168:14899290:+	0	+
#Deleted in new
chr12	14904006	14904610	ENSG00000182993.3|C12orf60|pc|chr12:14904006:14904610:+	0	+
#Deleted in new
chr12	14904006	14904661	ENSG00000182993.3|C12orf60|pc|chr12:14904006:14904661:+	0	+
#Partially deleted in new
chr12	14904006	14906586	ENSG00000182993.3|C12orf60|pc|chr12:14904006:14906586:+	0	+
#Deleted in new
chr12	14956175	14956333	ENSG00000111348.8|ARHGDIB|pc|chr12:14956175:14956333:-	0	-
#Deleted in new
chr12	1500524	1500771	ENSG00000249628.2|LINC00942|lncRNA|chr12:1500524:1500771:-	0	-
#Deleted in new
chr12	15006360	15006683	ENSG00000255727.1|LINC01489|lncRNA|chr12:15006360:15006683:+	0	+
#Deleted in new
chr12	1506158	1507318	ENSG00000249628.2|LINC00942|lncRNA|chr12:1506158:1507318:-	0	-
#Partially deleted in new
chr12	15110926	15111417	ENSG00000134533.6|RERG|pc|chr12:15110926:15111417:-	0	-
#Deleted in new
chr12	15114504	15114698	ENSG00000256650.1|RERG-IT1|lncRNA|chr12:15114504:15114698:-	0	-
#Deleted in new
chr12	15137829	15138163	ENSG00000134533.6|RERG|pc|chr12:15137829:15138163:-	0	-
#Deleted in new
chr1	215393645	215393767	ENSG00000282265.1|AL450990.1|lncRNA|chr1:215393645:215393767:-	0	-
#Deleted in new
chr1	215393958	215394418	ENSG00000282265.1|AL450990.1|lncRNA|chr1:215393958:215394418:-	0	-
#Deleted in new
chr1	21551278	21551428	ENSG00000162551.13|ALPL|pc|chr1:21551278:21551428:+	0	+
#Deleted in new
chr1	215580971	215581179	ENSG00000136636.12|KCTD3|pc|chr1:215580971:215581179:+	0	+
#Deleted in new
chr12	15595220	15595640	ENSG00000151490.13|PTPRO|pc|chr12:15595220:15595640:+	0	+
#Deleted in new
chr1	215618087	215618154	ENSG00000136636.12|KCTD3|pc|chr1:215618087:215618154:+	0	+
#Partially deleted in new
chr1	215622893	215625870	ENSG00000042781.12|USH2A|pc|chr1:215622893:215625870:-	0	-
#Deleted in new
chr12	15665022	15665106	ENSG00000151491.12|EPS8|pc|chr12:15665022:15665106:-	0	-
#Deleted in new
chr12	15780578	15780727	ENSG00000151491.12|EPS8|pc|chr12:15780578:15780727:-	0	-
#Deleted in new
chr12	15781738	15782120	ENSG00000255565.1|AC073651.1|lncRNA|chr12:15781738:15782120:+	0	+
#Partially deleted in new
chr12	15813492	15813752	ENSG00000256953.1|AC073651.3|lncRNA|chr12:15813492:15813752:-	0	-
#Deleted in new
chr12	15817047	15817110	ENSG00000256953.1|AC073651.3|lncRNA|chr12:15817047:15817110:-	0	-
#Deleted in new
chr12	15828180	15828274	ENSG00000256953.1|AC073651.3|lncRNA|chr12:15828180:15828274:-	0	-
#Partially deleted in new
chr1	21586471	21587089	ENSG00000233431.1|AL359815.1|lncRNA|chr1:21586471:21587089:+	0	+
#Deleted in new
chr12	15881106	15881199	ENSG00000151491.12|EPS8|pc|chr12:15881106:15881199:-	0	-
#Deleted in new
chr12	15911690	15911753	ENSG00000023697.12|DERA|pc|chr12:15911690:15911753:+	0	+
#Deleted in new
chr12	15916116	15916316	ENSG00000023697.12|DERA|pc|chr12:15916116:15916316:+	0	+
#Deleted in new
chr12	15951360	15951457	ENSG00000023697.12|DERA|pc|chr12:15951360:15951457:+	0	+
#Deleted in new
chr12	15985171	15985336	ENSG00000023697.12|DERA|pc|chr12:15985171:15985336:+	0	+
#Deleted in new
chr1	216079964	216080041	ENSG00000233620.5|AC093581.1|lncRNA|chr1:216079964:216080041:+	0	+
#Deleted in new
chr12	1616659	1617143	ENSG00000111186.12|WNT5B|pc|chr12:1616659:1617143:+	0	+
#Deleted in new
chr12	1617055	1617143	ENSG00000111186.12|WNT5B|pc|chr12:1617055:1617143:+	0	+
#Deleted in new
chr12	16347141	16347184	ENSG00000008394.12|MGST1|pc|chr12:16347141:16347184:+	0	+
#Deleted in new
chr12	16348893	16349106	ENSG00000008394.12|MGST1|pc|chr12:16348893:16349106:+	0	+
#Deleted in new
chr12	16353416	16353467	ENSG00000008394.12|MGST1|pc|chr12:16353416:16353467:+	0	+
#Deleted in new
chr12	16367324	16367465	ENSG00000008394.12|MGST1|pc|chr12:16367324:16367465:+	0	+
#Deleted in new
chr12	16376121	16377192	ENSG00000008394.12|MGST1|pc|chr12:16376121:16377192:+	0	+
#Partially deleted in new
chr12	16382826	16383604	ENSG00000008394.12|MGST1|pc|chr12:16382826:16383604:+	0	+
#Deleted in new
chr12	16383506	16383604	ENSG00000008394.12|MGST1|pc|chr12:16383506:16383604:+	0	+
#Deleted in new
chr12	16567410	16567583	ENSG00000256564.1|AC007552.2|lncRNA|chr12:16567410:16567583:+	0	+
#Deleted in new
chr12	16661765	16661973	ENSG00000283240.1|AC007529.2|lncRNA|chr12:16661765:16661973:+	0	+
#Deleted in new
chr1	21667597	21667681	ENSG00000076864.19|RAP1GAP|pc|chr1:21667597:21667681:-	0	-
#Deleted in new
chr12	16693799	16695977	ENSG00000255871.2|AC007529.1|lncRNA|chr12:16693799:16695977:+	0	+
#Deleted in new
chr1	216707358	216707486	ENSG00000196482.16|ESRRG|pc|chr1:216707358:216707486:-	0	-
#Deleted in new
chr1	216707419	216707486	ENSG00000196482.16|ESRRG|pc|chr1:216707419:216707486:-	0	-
#Deleted in new
chr12	16736241	16736306	ENSG00000283240.1|AC007529.2|lncRNA|chr12:16736241:16736306:+	0	+
#Deleted in new
chr12	16736517	16736575	ENSG00000283240.1|AC007529.2|lncRNA|chr12:16736517:16736575:+	0	+
#Deleted in new
chr12	16749792	16749876	ENSG00000283240.1|AC007529.2|lncRNA|chr12:16749792:16749876:+	0	+
#Deleted in new
chr12	16760941	16761069	ENSG00000283240.1|AC007529.2|lncRNA|chr12:16760941:16761069:+	0	+
#Deleted in new
chr12	16784725	16784831	ENSG00000283240.1|AC007529.2|lncRNA|chr12:16784725:16784831:+	0	+
#Partially deleted in new
chr1	21685891	21687239	ENSG00000090686.15|USP48|pc|chr1:21685891:21687239:-	0	-
#Deleted in new
chr1	216959561	216959685	ENSG00000196482.16|ESRRG|pc|chr1:216959561:216959685:-	0	-
#Deleted in new
chr12	1702885	1702982	ENSG00000006831.9|ADIPOR2|pc|chr12:1702885:1702982:+	0	+
#Partially deleted in new
chr1	21715123	21715457	ENSG00000090686.15|USP48|pc|chr1:21715123:21715457:-	0	-
#Deleted in new
chr1	2171552	2171645	ENSG00000067606.16|PRKCZ|pc|chr1:2171552:2171645:+	0	+
#Deleted in new
chr12	1730724	1731056	ENSG00000006831.9|ADIPOR2|pc|chr12:1730724:1731056:+	0	+
#Deleted in new
chr1	21732663	21732826	ENSG00000090686.15|USP48|pc|chr1:21732663:21732826:-	0	-
#Deleted in new
chr1	21732761	21732836	ENSG00000090686.15|USP48|pc|chr1:21732761:21732836:-	0	-
#Deleted in new
chr12	17552766	17552891	ENSG00000256994.1|LINC02378|lncRNA|chr12:17552766:17552891:-	0	-
#Deleted in new
chr12	17588993	17589090	ENSG00000256994.1|LINC02378|lncRNA|chr12:17588993:17589090:-	0	-
#Deleted in new
chr12	17589256	17589383	ENSG00000256389.1|AC087321.1|lncRNA|chr12:17589256:17589383:+	0	+
#Deleted in new
chr12	17589705	17589992	ENSG00000256994.1|LINC02378|lncRNA|chr12:17589705:17589992:-	0	-
#Deleted in new
chr12	1760728	1760980	ENSG00000006831.9|ADIPOR2|pc|chr12:1760728:1760980:+	0	+
#Partially deleted in new
chr1	217737843	217737967	ENSG00000162814.10|SPATA17|pc|chr1:217737843:217737967:+	0	+
#Deleted in new
chr1	217739472	217739589	ENSG00000162814.10|SPATA17|pc|chr1:217739472:217739589:+	0	+
#Deleted in new
chr1	217784961	217785120	ENSG00000234070.1|SPATA17-AS1|lncRNA|chr1:217784961:217785120:-	0	-
#Partially deleted in new
chr1	217867021	217871696	ENSG00000162814.10|SPATA17|pc|chr1:217867021:217871696:+	0	+
#Deleted in new
chr1	217892899	217892926	ENSG00000231814.2|LINC00210|lncRNA|chr1:217892899:217892926:+	0	+
#Partially deleted in new
chr12	1791956	1793759	ENSG00000151062.14|CACNA2D4|pc|chr12:1791956:1793759:-	0	-
#Partially deleted in new
chr12	1791962	1793759	ENSG00000151062.14|CACNA2D4|pc|chr12:1791962:1793759:-	0	-
#Partially deleted in new
chr12	1792772	1793759	ENSG00000151062.14|CACNA2D4|pc|chr12:1792772:1793759:-	0	-
#Partially deleted in new
chr12	1792801	1793759	ENSG00000151062.14|CACNA2D4|pc|chr12:1792801:1793759:-	0	-
#Partially deleted in new
chr1	218043504	218044597	ENSG00000232100.1|LINC01653|lncRNA|chr1:218043504:218044597:+	0	+
#Deleted in new
chr1	218046133	218046253	ENSG00000232100.1|LINC01653|lncRNA|chr1:218046133:218046253:+	0	+
#Deleted in new
chr1	218051154	218051262	ENSG00000232100.1|LINC01653|lncRNA|chr1:218051154:218051262:+	0	+
#Deleted in new
chr12	18140791	18140873	ENSG00000111404.6|RERGL|pc|chr12:18140791:18140873:-	0	-
#Deleted in new
chr12	18143183	18143293	ENSG00000111404.6|RERGL|pc|chr12:18143183:18143293:-	0	-
#Deleted in new
chr1	2181793	2182741	ENSG00000182873.5|PRKCZ-AS1|lncRNA|chr1:2181793:2182741:-	0	-
#Deleted in new
chr1	2181831	2181914	ENSG00000067606.16|PRKCZ|pc|chr1:2181831:2181914:+	0	+
#Deleted in new
chr12	18202009	18202070	ENSG00000111404.6|RERGL|pc|chr12:18202009:18202070:-	0	-
#Deleted in new
chr12	18247613	18248082	ENSG00000139144.9|PIK3C2G|pc|chr12:18247613:18248082:+	0	+
#Deleted in new
chr1	2182734	2182823	ENSG00000182873.5|PRKCZ-AS1|lncRNA|chr1:2182734:2182823:-	0	-
#Deleted in new
chr12	1827728	1827797	ENSG00000166159.10|LRTM2|pc|chr12:1827728:1827797:+	0	+
#Deleted in new
chr12	1827728	1827816	ENSG00000166159.10|LRTM2|pc|chr12:1827728:1827816:+	0	+
#Deleted in new
chr12	18285304	18285401	ENSG00000111404.6|RERGL|pc|chr12:18285304:18285401:-	0	-
#Deleted in new
chr12	18325034	18325098	ENSG00000139144.9|PIK3C2G|pc|chr12:18325034:18325098:+	0	+
#Deleted in new
chr1	2183570	2183704	ENSG00000182873.5|PRKCZ-AS1|lncRNA|chr1:2183570:2183704:-	0	-
#Deleted in new
chr1	2183570	2183875	ENSG00000182873.5|PRKCZ-AS1|lncRNA|chr1:2183570:2183875:-	0	-
#Partially deleted in new
chr1	2183990	2184389	ENSG00000182873.5|PRKCZ-AS1|lncRNA|chr1:2183990:2184389:-	0	-
#Deleted in new
chr1	218523352	218523450	ENSG00000228208.6|C1orf143|lncRNA|chr1:218523352:218523450:+	0	+
#Deleted in new
chr12	18715685	18715799	ENSG00000255648.1|AC087242.1|lncRNA|chr12:18715685:18715799:+	0	+
#Deleted in new
chr12	18730993	18731118	ENSG00000139151.14|PLCZ1|pc|chr12:18730993:18731118:-	0	-
#Deleted in new
chr1	21877513	21877539	ENSG00000142798.17|HSPG2|pc|chr1:21877513:21877539:-	0	-
#Deleted in new
chr1	218912756	218913015	ENSG00000225561.1|LINC01710|lncRNA|chr1:218912756:218913015:-	0	-
#Deleted in new
chr1	218915234	218915318	ENSG00000225561.1|LINC01710|lncRNA|chr1:218915234:218915318:-	0	-
#Deleted in new
chr1	218916137	218916184	ENSG00000225561.1|LINC01710|lncRNA|chr1:218916137:218916184:-	0	-
#Partially deleted in new
chr1	2189543	2193910	ENSG00000162585.16|FAAP20|pc|chr1:2189543:2193910:-	0	-
#Deleted in new
chr12	1915192	1915227	ENSG00000151062.14|CACNA2D4|pc|chr12:1915192:1915227:-	0	-
#Partially deleted in new
chr1	219156119	219156199	ENSG00000228063.1|LYPLAL1-AS1|lncRNA|chr1:219156119:219156199:-	0	-
#Deleted in new
chr1	2191900	2192975	ENSG00000162585.16|FAAP20|pc|chr1:2191900:2192975:-	0	-
#Partially deleted in new
chr12	19200324	19202003	ENSG00000052126.14|PLEKHA5|pc|chr12:19200324:19202003:+	0	+
#Partially deleted in new
chr1	219225311	219225497	ENSG00000223842.1|AL360093.1|lncRNA|chr1:219225311:219225497:-	0	-
#Deleted in new
chr12	1922631	1922867	ENSG00000256706.1|AC005342.2|lncRNA|chr12:1922631:1922867:+	0	+
#Deleted in new
chr1	2192646	2192975	ENSG00000162585.16|FAAP20|pc|chr1:2192646:2192975:-	0	-
#Partially deleted in new
chr1	219270773	219273387	ENSG00000277007.1|AC096642.1|lncRNA|chr1:219270773:219273387:+	0	+
#Deleted in new
chr1	2192844	2192975	ENSG00000162585.16|FAAP20|pc|chr1:2192844:2192975:-	0	-
#Deleted in new
chr12	1929201	1931430	ENSG00000235049.1|LINC00940|lncRNA|chr12:1929201:1931430:-	0	-
#Partially deleted in new
chr12	19320535	19320885	ENSG00000052126.14|PLEKHA5|pc|chr12:19320535:19320885:+	0	+
#Deleted in new
chr12	19321583	19321660	ENSG00000052126.14|PLEKHA5|pc|chr12:19321583:19321660:+	0	+
#Partially deleted in new
chr12	19370721	19373668	ENSG00000052126.14|PLEKHA5|pc|chr12:19370721:19373668:+	0	+
#Deleted in new
chr12	19404044	19404216	ENSG00000139154.14|AEBP2|pc|chr12:19404044:19404216:+	0	+
#Deleted in new
chr12	19404065	19404124	ENSG00000139154.14|AEBP2|pc|chr12:19404065:19404124:+	0	+
#Partially deleted in new
chr1	219409522	219410267	ENSG00000228536.2|AL513283.1|lncRNA|chr1:219409522:219410267:-	0	-
#Deleted in new
chr1	219411717	219411939	ENSG00000228536.2|AL513283.1|lncRNA|chr1:219411717:219411939:-	0	-
#Deleted in new
chr1	219435151	219435413	ENSG00000228536.2|AL513283.1|lncRNA|chr1:219435151:219435413:-	0	-
#Deleted in new
chr1	219435152	219435413	ENSG00000228536.2|AL513283.1|lncRNA|chr1:219435152:219435413:-	0	-
#Deleted in new
chr1	219437055	219437173	ENSG00000228536.2|AL513283.1|lncRNA|chr1:219437055:219437173:-	0	-
#Deleted in new
chr1	219459074	219459194	ENSG00000228536.2|AL513283.1|lncRNA|chr1:219459074:219459194:-	0	-
#Deleted in new
chr12	19552852	19553272	ENSG00000139154.14|AEBP2|pc|chr12:19552852:19553272:+	0	+
#Deleted in new
chr1	219557191	219557235	ENSG00000238232.1|AL356364.1|lncRNA|chr1:219557191:219557235:+	0	+
#Deleted in new
chr1	219557563	219557701	ENSG00000238232.1|AL356364.1|lncRNA|chr1:219557563:219557701:+	0	+
#Deleted in new
chr12	1961315	1961395	ENSG00000151065.13|DCP1B|pc|chr12:1961315:1961395:-	0	-
#Deleted in new
chr1	219685426	219685732	ENSG00000196660.10|SLC30A10|pc|chr1:219685426:219685732:-	0	-
#Deleted in new
chr12	19720632	19720801	ENSG00000139154.14|AEBP2|pc|chr12:19720632:19720801:+	0	+
#Deleted in new
chr12	19775450	19775603	ENSG00000255910.1|AC024901.1|lncRNA|chr12:19775450:19775603:+	0	+
#Deleted in new
chr1	219817662	219817704	ENSG00000196660.10|SLC30A10|pc|chr1:219817662:219817704:-	0	-
#Deleted in new
chr1	219884125	219884302	ENSG00000196660.10|SLC30A10|pc|chr1:219884125:219884302:-	0	-
#Deleted in new
chr12	19923197	19923256	ENSG00000255910.1|AC024901.1|lncRNA|chr12:19923197:19923256:+	0	+
#Deleted in new
chr1	21998150	21998642	ENSG00000219073.7|CELA3B|pc|chr1:21998150:21998642:+	0	+
#Deleted in new
chr12	20008644	20008767	ENSG00000255910.1|AC024901.1|lncRNA|chr12:20008644:20008767:+	0	+
#Deleted in new
chr12	20009720	20009937	ENSG00000255910.1|AC024901.1|lncRNA|chr12:20009720:20009937:+	0	+
#Deleted in new
chr1	220089643	220089769	ENSG00000162813.17|BPNT1|pc|chr1:220089643:220089769:-	0	-
#Deleted in new
chr1	220089643	220089812	ENSG00000162813.17|BPNT1|pc|chr1:220089643:220089812:-	0	-
#Deleted in new
chr1	220089643	220089833	ENSG00000162813.17|BPNT1|pc|chr1:220089643:220089833:-	0	-
#Deleted in new
chr1	220089643	220089853	ENSG00000162813.17|BPNT1|pc|chr1:220089643:220089853:-	0	-
#Deleted in new
chr1	220089685	220089733	ENSG00000162813.17|BPNT1|pc|chr1:220089685:220089733:-	0	-
#Deleted in new
chr1	220089685	220089772	ENSG00000162813.17|BPNT1|pc|chr1:220089685:220089772:-	0	-
#Deleted in new
chr1	220089685	220089827	ENSG00000162813.17|BPNT1|pc|chr1:220089685:220089827:-	0	-
#Deleted in new
chr1	220089685	220089853	ENSG00000162813.17|BPNT1|pc|chr1:220089685:220089853:-	0	-
#Deleted in new
chr1	220089685	220089951	ENSG00000162813.17|BPNT1|pc|chr1:220089685:220089951:-	0	-
#Deleted in new
chr1	220090286	220090462	ENSG00000162813.17|BPNT1|pc|chr1:220090286:220090462:-	0	-
#Deleted in new
chr12	20098751	20098868	ENSG00000256287.1|LINC02398|lncRNA|chr12:20098751:20098868:+	0	+
#Deleted in new
chr1	2201049	2201225	ENSG00000162585.16|FAAP20|pc|chr1:2201049:2201225:-	0	-
#Deleted in new
chr12	20127815	20127958	ENSG00000256499.1|LINC02468|lncRNA|chr12:20127815:20127958:-	0	-
#Deleted in new
chr12	20129654	20129813	ENSG00000256499.1|LINC02468|lncRNA|chr12:20129654:20129813:-	0	-
#Deleted in new
chr1	220134614	220134677	ENSG00000067704.9|IARS2|pc|chr1:220134614:220134677:+	0	+
#Deleted in new
chr1	220134792	220134846	ENSG00000067704.9|IARS2|pc|chr1:220134792:220134846:+	0	+
#Deleted in new
chr1	220211287	220211377	ENSG00000118873.15|RAB3GAP2|pc|chr1:220211287:220211377:-	0	-
#Partially deleted in new
chr1	220219434	220219629	ENSG00000118873.15|RAB3GAP2|pc|chr1:220219434:220219629:-	0	-
#Deleted in new
chr1	22024805	22024955	ENSG00000228397.2|LINC01635|lncRNA|chr1:22024805:22024955:-	0	-
#Deleted in new
chr1	22024805	22024966	ENSG00000228397.2|LINC01635|lncRNA|chr1:22024805:22024966:-	0	-
#Deleted in new
chr1	22025059	22025483	ENSG00000228397.2|LINC01635|lncRNA|chr1:22025059:22025483:-	0	-
#Deleted in new
chr1	22025963	22026048	ENSG00000228397.2|LINC01635|lncRNA|chr1:22025963:22026048:-	0	-
#Deleted in new
chr12	203268	203507	ENSG00000111181.12|SLC6A12|pc|chr12:203268:203507:-	0	-
#Deleted in new
chr1	2203435	2203630	ENSG00000162585.16|FAAP20|pc|chr1:2203435:2203630:-	0	-
#Deleted in new
chr1	2203435	2203882	ENSG00000162585.16|FAAP20|pc|chr1:2203435:2203882:-	0	-
#Deleted in new
chr1	2203563	2203630	ENSG00000162585.16|FAAP20|pc|chr1:2203563:2203630:-	0	-
#Deleted in new
chr1	220359730	220359925	ENSG00000226927.1|AL451081.1|lncRNA|chr1:220359730:220359925:-	0	-
#Deleted in new
chr1	220360133	220360183	ENSG00000226927.1|AL451081.1|lncRNA|chr1:220360133:220360183:-	0	-
#Deleted in new
chr12	203641	203739	ENSG00000256577.2|AC007406.4|lncRNA|chr12:203641:203739:+	0	+
#Partially deleted in new
chr1	220401121	220404033	ENSG00000260505.1|AC096644.4|lncRNA|chr1:220401121:220404033:+	0	+
#Deleted in new
chr12	204017	204229	ENSG00000256577.2|AC007406.4|lncRNA|chr12:204017:204229:+	0	+
#Deleted in new
chr1	220486990	220487043	ENSG00000231529.1|AC096644.1|lncRNA|chr1:220486990:220487043:-	0	-
#Deleted in new
chr1	22059196	22059686	ENSG00000230068.2|CDC42-IT1|lncRNA|chr1:22059196:22059686:+	0	+
#Deleted in new
chr1	2206304	2206424	ENSG00000162585.16|FAAP20|pc|chr1:2206304:2206424:-	0	-
#Deleted in new
chr1	22063997	22064199	ENSG00000230068.2|CDC42-IT1|lncRNA|chr1:22063997:22064199:+	0	+
#Deleted in new
chr1	2206514	2206667	ENSG00000162585.16|FAAP20|pc|chr1:2206514:2206667:-	0	-
#Deleted in new
chr1	22074093	22074219	ENSG00000070831.15|CDC42|pc|chr1:22074093:22074219:+	0	+
#Deleted in new
chr1	220754367	220754432	ENSG00000117791.15|MARC2|pc|chr1:220754367:220754432:+	0	+
#Deleted in new
chr1	220793188	220794355	ENSG00000186205.12|MARC1|pc|chr1:220793188:220794355:+	0	+
#Deleted in new
chr1	220808858	220808976	ENSG00000186205.12|MARC1|pc|chr1:220808858:220808976:+	0	+
#Deleted in new
chr12	20813523	20813638	ENSG00000111700.12|SLCO1B3|pc|chr12:20813523:20813638:+	0	+
#Deleted in new
chr1	220829254	220829442	ENSG00000238078.1|LINC01352|lncRNA|chr1:220829254:220829442:+	0	+
#Deleted in new
chr1	220832762	220832858	ENSG00000257551.1|HLX-AS1|lncRNA|chr1:220832762:220832858:-	0	-
#Deleted in new
chr12	20858885	20858975	ENSG00000111700.12|SLCO1B3|pc|chr12:20858885:20858975:+	0	+
#Partially deleted in new
chr12	20901899	20902333	ENSG00000111700.12|SLCO1B3|pc|chr12:20901899:20902333:+	0	+
#Deleted in new
chr12	20916003	20916724	ENSG00000111700.12|SLCO1B3|pc|chr12:20916003:20916724:+	0	+
#Deleted in new
chr12	20916003	20916911	ENSG00000111700.12|SLCO1B3|pc|chr12:20916003:20916911:+	0	+
#Deleted in new
chr12	21075259	21075784	ENSG00000205754.10|SLCO1B7|pc|chr12:21075259:21075784:+	0	+
#Deleted in new
chr12	21089907	21089929	ENSG00000205754.10|SLCO1B7|pc|chr12:21089907:21089929:+	0	+
#Deleted in new
chr12	21089907	21089929	ENSG00000257062.6|AC022335.1|pc|chr12:21089907:21089929:+	0	+
#Deleted in new
chr12	21089907	21090106	ENSG00000205754.10|SLCO1B7|pc|chr12:21089907:21090106:+	0	+
#Deleted in new
chr12	21089907	21090245	ENSG00000257046.5|AC011604.2|pc|chr12:21089907:21090245:+	0	+
#Deleted in new
chr12	21092512	21092745	ENSG00000205754.10|SLCO1B7|pc|chr12:21092512:21092745:+	0	+
#Deleted in new
chr12	21126107	21126257	ENSG00000257062.6|AC022335.1|pc|chr12:21126107:21126257:+	0	+
#Deleted in new
chr12	21126117	21126257	ENSG00000257062.6|AC022335.1|pc|chr12:21126117:21126257:+	0	+
#Deleted in new
chr12	21238978	21239246	ENSG00000134538.2|SLCO1B1|pc|chr12:21238978:21239246:+	0	+
#Duplicated in new
chr12	21269337	21269767	ENSG00000084453.16|SLCO1A2|pc|chr12:21269337:21269767:-	0	-
#Duplicated in new
chr12	21269413	21269767	ENSG00000084453.16|SLCO1A2|pc|chr12:21269413:21269767:-	0	-
#Duplicated in new
chr12	21293944	21295792	ENSG00000084453.16|SLCO1A2|pc|chr12:21293944:21295792:-	0	-
#Deleted in new
chr12	21311626	21311758	ENSG00000084453.16|SLCO1A2|pc|chr12:21311626:21311758:-	0	-
#Deleted in new
chr12	21324593	21324681	ENSG00000084453.16|SLCO1A2|pc|chr12:21324593:21324681:-	0	-
#Deleted in new
chr12	21324593	21324736	ENSG00000084453.16|SLCO1A2|pc|chr12:21324593:21324736:-	0	-
#Partially deleted in new
chr1	221330079	221333985	ENSG00000234754.1|C1orf140|lncRNA|chr1:221330079:221333985:-	0	-
#Deleted in new
chr1	221332638	221333074	ENSG00000234754.1|C1orf140|lncRNA|chr1:221332638:221333074:-	0	-
#Duplicated in new
chr12	21334826	21334895	ENSG00000084453.16|SLCO1A2|pc|chr12:21334826:21334895:-	0	-
#Duplicated in new
chr12	21334826	21334900	ENSG00000084453.16|SLCO1A2|pc|chr12:21334826:21334900:-	0	-
#Duplicated in new
chr12	21334826	21334907	ENSG00000084453.16|SLCO1A2|pc|chr12:21334826:21334907:-	0	-
#Duplicated in new
chr12	21334826	21334913	ENSG00000084453.16|SLCO1A2|pc|chr12:21334826:21334913:-	0	-
#Deleted in new
chr12	21354958	21355013	ENSG00000121351.7|IAPP|pc|chr12:21354958:21355013:+	0	+
#Deleted in new
chr12	21394905	21395261	ENSG00000084453.16|SLCO1A2|pc|chr12:21394905:21395261:-	0	-
#Deleted in new
chr12	21394905	21395397	ENSG00000084453.16|SLCO1A2|pc|chr12:21394905:21395397:-	0	-
#Deleted in new
chr12	21394905	21395437	ENSG00000084453.16|SLCO1A2|pc|chr12:21394905:21395437:-	0	-
#Deleted in new
chr12	21395269	21395397	ENSG00000084453.16|SLCO1A2|pc|chr12:21395269:21395397:-	0	-
#Deleted in new
chr12	21417881	21417945	ENSG00000084453.16|SLCO1A2|pc|chr12:21417881:21417945:-	0	-
#Deleted in new
chr12	21417881	21418016	ENSG00000084453.16|SLCO1A2|pc|chr12:21417881:21418016:-	0	-
#Deleted in new
chr12	21419176	21419320	ENSG00000084453.16|SLCO1A2|pc|chr12:21419176:21419320:-	0	-
#Deleted in new
chr12	21419176	21419594	ENSG00000084453.16|SLCO1A2|pc|chr12:21419176:21419594:-	0	-
#Deleted in new
chr12	21419551	21419584	ENSG00000084453.16|SLCO1A2|pc|chr12:21419551:21419584:-	0	-
#Deleted in new
chr12	21441206	21441300	ENSG00000121350.15|PYROXD1|pc|chr12:21441206:21441300:+	0	+
#Deleted in new
chr12	21456864	21457086	ENSG00000121350.15|PYROXD1|pc|chr12:21456864:21457086:+	0	+
#Deleted in new
chr12	21501169	21501215	ENSG00000004700.15|RECQL|pc|chr12:21501169:21501215:-	0	-
#Deleted in new
chr12	21501169	21501372	ENSG00000004700.15|RECQL|pc|chr12:21501169:21501372:-	0	-
#Deleted in new
chr12	21501169	21501593	ENSG00000004700.15|RECQL|pc|chr12:21501169:21501593:-	0	-
#Deleted in new
chr12	21501412	21501551	ENSG00000004700.15|RECQL|pc|chr12:21501412:21501551:-	0	-
#Partially deleted in new
chr12	21501412	21501655	ENSG00000004700.15|RECQL|pc|chr12:21501412:21501655:-	0	-
#Deleted in new
chr12	21501480	21501593	ENSG00000004700.15|RECQL|pc|chr12:21501480:21501593:-	0	-
#Deleted in new
chr12	21501480	21501595	ENSG00000004700.15|RECQL|pc|chr12:21501480:21501595:-	0	-
#Deleted in new
chr1	221508558	221509170	ENSG00000232436.1|AL360013.2|lncRNA|chr1:221508558:221509170:+	0	+
#Deleted in new
chr1	221510784	221510979	ENSG00000232436.1|AL360013.2|lncRNA|chr1:221510784:221510979:+	0	+
#Partially deleted in new
chr12	21527434	21527789	ENSG00000134548.9|SPX|pc|chr12:21527434:21527789:+	0	+
#Deleted in new
chr12	21527935	21528151	ENSG00000134548.9|SPX|pc|chr12:21527935:21528151:+	0	+
#Deleted in new
chr12	21527951	21528151	ENSG00000134548.9|SPX|pc|chr12:21527951:21528151:+	0	+
#Deleted in new
chr12	21534979	21535111	ENSG00000134548.9|SPX|pc|chr12:21534979:21535111:+	0	+
#Deleted in new
chr12	21662312	21662771	ENSG00000256615.1|AC010197.1|lncRNA|chr12:21662312:21662771:+	0	+
#Deleted in new
chr12	21737696	21737783	ENSG00000111716.12|LDHB|pc|chr12:21737696:21737783:-	0	-
#Deleted in new
chr12	21737696	21737786	ENSG00000111716.12|LDHB|pc|chr12:21737696:21737786:-	0	-
#Deleted in new
chr12	21757772	21757831	ENSG00000111716.12|LDHB|pc|chr12:21757772:21757831:-	0	-
#Deleted in new
chr12	21757772	21757857	ENSG00000111716.12|LDHB|pc|chr12:21757772:21757857:-	0	-
#Partially deleted in new
chr12	21759913	21760032	ENSG00000256615.1|AC010197.1|lncRNA|chr12:21759913:21760032:+	0	+
#Partially deleted in new
chr12	21831078	21831194	ENSG00000257022.1|AC008250.1|lncRNA|chr12:21831078:21831194:+	0	+
#Deleted in new
chr1	221840307	221840453	ENSG00000227925.1|LINC01655|lncRNA|chr1:221840307:221840453:-	0	-
#Deleted in new
chr1	221840535	221840666	ENSG00000227925.1|LINC01655|lncRNA|chr1:221840535:221840666:-	0	-
#Deleted in new
chr12	21869581	21869662	ENSG00000257022.1|AC008250.1|lncRNA|chr12:21869581:21869662:+	0	+
#Deleted in new
chr1	221883799	221883888	ENSG00000238042.5|LINC02257|lncRNA|chr1:221883799:221883888:-	0	-
#Partially deleted in new
chr1	221913647	221913858	ENSG00000238042.5|LINC02257|lncRNA|chr1:221913647:221913858:-	0	-
#Deleted in new
chr1	221913761	221913858	ENSG00000238042.5|LINC02257|lncRNA|chr1:221913761:221913858:-	0	-
#Deleted in new
chr1	221918591	221918712	ENSG00000238042.5|LINC02257|lncRNA|chr1:221918591:221918712:-	0	-
#Deleted in new
chr12	21922968	21923856	ENSG00000069431.11|ABCC9|pc|chr12:21922968:21923856:-	0	-
#Partially deleted in new
chr12	21923463	21925559	ENSG00000069431.11|ABCC9|pc|chr12:21923463:21925559:-	0	-
#Deleted in new
chr12	21923570	21923856	ENSG00000069431.11|ABCC9|pc|chr12:21923570:21923856:-	0	-
#Deleted in new
chr12	21923812	21923856	ENSG00000069431.11|ABCC9|pc|chr12:21923812:21923856:-	0	-
#Deleted in new
chr1	221966340	221966502	ENSG00000228437.5|LINC02474|lncRNA|chr1:221966340:221966502:+	0	+
#Deleted in new
chr1	221966409	221966502	ENSG00000228437.5|LINC02474|lncRNA|chr1:221966409:221966502:+	0	+
#Deleted in new
chr1	221968347	221968496	ENSG00000228437.5|LINC02474|lncRNA|chr1:221968347:221968496:+	0	+
#Deleted in new
chr1	221978359	221978523	ENSG00000238042.5|LINC02257|lncRNA|chr1:221978359:221978523:-	0	-
#Deleted in new
chr1	221982999	221983143	ENSG00000228437.5|LINC02474|lncRNA|chr1:221982999:221983143:+	0	+
#Deleted in new
chr1	221984053	221984964	ENSG00000228437.5|LINC02474|lncRNA|chr1:221984053:221984964:+	0	+
#Deleted in new
chr1	222041704	222041922	ENSG00000232679.1|LINC01705|lncRNA|chr1:222041704:222041922:-	0	-
#Deleted in new
chr1	222058413	222058678	ENSG00000232679.1|LINC01705|lncRNA|chr1:222058413:222058678:-	0	-
#Partially deleted in new
chr12	22063772	22063927	ENSG00000111728.10|ST8SIA1|pc|chr12:22063772:22063927:-	0	-
#Deleted in new
chr1	222064684	222064763	ENSG00000232679.1|LINC01705|lncRNA|chr1:222064684:222064763:-	0	-
#Deleted in new
chr12	22066344	22066435	ENSG00000111728.10|ST8SIA1|pc|chr12:22066344:22066435:-	0	-
#Deleted in new
chr12	22066418	22066435	ENSG00000111728.10|ST8SIA1|pc|chr12:22066418:22066435:-	0	-
#Deleted in new
chr12	22070571	22070613	ENSG00000111728.10|ST8SIA1|pc|chr12:22070571:22070613:-	0	-
#Deleted in new
chr12	22070571	22070625	ENSG00000111728.10|ST8SIA1|pc|chr12:22070571:22070625:-	0	-
#Deleted in new
chr1	222089168	222089565	ENSG00000236230.1|AL356108.1|lncRNA|chr1:222089168:222089565:-	0	-
#Deleted in new
chr12	22107158	22107536	ENSG00000111728.10|ST8SIA1|pc|chr12:22107158:22107536:-	0	-
#Deleted in new
chr12	22107274	22107536	ENSG00000111728.10|ST8SIA1|pc|chr12:22107274:22107536:-	0	-
#Deleted in new
chr12	22150197	22150234	ENSG00000111728.10|ST8SIA1|pc|chr12:22150197:22150234:-	0	-
#Deleted in new
chr12	2221614	2221695	ENSG00000256025.1|CACNA1C-AS4|lncRNA|chr12:2221614:2221695:-	0	-
#Deleted in new
chr1	222218378	222218489	ENSG00000236230.1|AL356108.1|lncRNA|chr1:222218378:222218489:-	0	-
#Deleted in new
chr12	2222199	2222420	ENSG00000256025.1|CACNA1C-AS4|lncRNA|chr12:2222199:2222420:-	0	-
#Deleted in new
chr12	22268511	22268605	ENSG00000111728.10|ST8SIA1|pc|chr12:22268511:22268605:-	0	-
#Deleted in new
chr12	22268511	22268613	ENSG00000111728.10|ST8SIA1|pc|chr12:22268511:22268613:-	0	-
#Partially deleted in new
chr12	22324411	22326341	ENSG00000111728.10|ST8SIA1|pc|chr12:22324411:22326341:-	0	-
#Partially deleted in new
chr12	22325098	22325459	ENSG00000111728.10|ST8SIA1|pc|chr12:22325098:22325459:-	0	-
#Deleted in new
chr12	22325797	22325932	ENSG00000111728.10|ST8SIA1|pc|chr12:22325797:22325932:-	0	-
#Deleted in new
chr12	22354178	22354325	ENSG00000111728.10|ST8SIA1|pc|chr12:22354178:22354325:-	0	-
#Deleted in new
chr12	22354202	22354325	ENSG00000111728.10|ST8SIA1|pc|chr12:22354202:22354325:-	0	-
#Deleted in new
chr12	22354696	22354783	ENSG00000111728.10|ST8SIA1|pc|chr12:22354696:22354783:-	0	-
#Deleted in new
chr12	22376665	22376943	ENSG00000111728.10|ST8SIA1|pc|chr12:22376665:22376943:-	0	-
#Deleted in new
chr1	222385640	222385692	ENSG00000236230.1|AL356108.1|lncRNA|chr1:222385640:222385692:-	0	-
#Deleted in new
chr12	22395087	22395327	ENSG00000256714.1|AC087318.1|lncRNA|chr12:22395087:22395327:-	0	-
#Deleted in new
chr12	22397926	22398075	ENSG00000256714.1|AC087318.1|lncRNA|chr12:22397926:22398075:-	0	-
#Deleted in new
chr12	22436875	22437041	ENSG00000111728.10|ST8SIA1|pc|chr12:22436875:22437041:-	0	-
#Deleted in new
chr1	222452737	222452899	ENSG00000226643.2|AL513314.1|lncRNA|chr1:222452737:222452899:-	0	-
#Deleted in new
chr1	222454038	222454148	ENSG00000226643.2|AL513314.1|lncRNA|chr1:222454038:222454148:-	0	-
#Deleted in new
chr1	222454659	222454705	ENSG00000226643.2|AL513314.1|lncRNA|chr1:222454659:222454705:-	0	-
#Deleted in new
chr12	22460518	22460697	ENSG00000256973.1|AC053513.1|lncRNA|chr12:22460518:22460697:-	0	-
#Deleted in new
chr1	222477251	222477304	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222477251:222477304:-	0	-
#Deleted in new
chr12	22477261	22477338	ENSG00000111731.12|C2CD5|pc|chr12:22477261:22477338:-	0	-
#Deleted in new
chr1	222479173	222479558	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222479173:222479558:-	0	-
#Deleted in new
chr1	222479367	222479558	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222479367:222479558:-	0	-
#Deleted in new
chr1	222480302	222480426	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222480302:222480426:-	0	-
#Deleted in new
chr1	222486056	222486121	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222486056:222486121:-	0	-
#Deleted in new
chr1	222486056	222486207	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222486056:222486207:-	0	-
#Deleted in new
chr1	222486059	222486121	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222486059:222486121:-	0	-
#Deleted in new
chr1	222489585	222489785	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222489585:222489785:-	0	-
#Deleted in new
chr1	222489588	222489700	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222489588:222489700:-	0	-
#Deleted in new
chr1	222490122	222490220	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222490122:222490220:-	0	-
#Deleted in new
chr1	222492073	222492197	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222492073:222492197:-	0	-
#Deleted in new
chr1	222501337	222501533	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222501337:222501533:-	0	-
#Deleted in new
chr1	222501468	222501533	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222501468:222501533:-	0	-
#Deleted in new
chr1	222504365	222504484	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222504365:222504484:-	0	-
#Deleted in new
chr1	222504365	222504603	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222504365:222504603:-	0	-
#Deleted in new
chr1	222504365	222504622	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222504365:222504622:-	0	-
#Deleted in new
chr1	222504411	222504481	ENSG00000276997.4|AL513314.2|lncRNA|chr1:222504411:222504481:-	0	-
#Deleted in new
chr1	222557901	222558268	ENSG00000143498.17|TAF1A|pc|chr1:222557901:222558268:-	0	-
#Deleted in new
chr1	222568828	222569424	ENSG00000143498.17|TAF1A|pc|chr1:222568828:222569424:-	0	-
#Deleted in new
chr12	22601424	22601470	ENSG00000250166.2|AC087241.1|lncRNA|chr12:22601424:22601470:+	0	+
#Deleted in new
chr12	22618484	22618867	ENSG00000250166.2|AC087241.1|lncRNA|chr12:22618484:22618867:+	0	+
#Deleted in new
chr12	22638463	22638943	ENSG00000274885.1|AC087241.4|lncRNA|chr12:22638463:22638943:+	0	+
#Deleted in new
chr12	22644210	22644587	ENSG00000139163.15|ETNK1|pc|chr12:22644210:22644587:+	0	+
#Partially deleted in new
chr1	222649262	222649791	ENSG00000154305.16|MIA3|pc|chr1:222649262:222649791:+	0	+
#Deleted in new
chr1	222664882	222665221	ENSG00000154305.16|MIA3|pc|chr1:222664882:222665221:+	0	+
#Deleted in new
chr12	22682280	22682339	ENSG00000139163.15|ETNK1|pc|chr12:22682280:22682339:+	0	+
#Deleted in new
chr12	22699858	22700094	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22699858:22700094:+	0	+
#Deleted in new
chr12	22699940	22700094	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22699940:22700094:+	0	+
#Deleted in new
chr12	22699953	22700094	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22699953:22700094:+	0	+
#Deleted in new
chr12	22700027	22700094	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22700027:22700094:+	0	+
#Deleted in new
chr12	22708655	22708740	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22708655:22708740:+	0	+
#Deleted in new
chr12	22723941	22724003	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22723941:22724003:+	0	+
#Partially deleted in new
chr12	22731738	22732240	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22731738:22732240:+	0	+
#Partially deleted in new
chr1	222737215	222737322	ENSG00000197520.10|FAM177B|pc|chr1:222737215:222737322:+	0	+
#Deleted in new
chr1	222737306	222737322	ENSG00000197520.10|FAM177B|pc|chr1:222737306:222737322:+	0	+
#Deleted in new
chr12	22742581	22742632	ENSG00000256923.1|AC084819.1|lncRNA|chr12:22742581:22742632:+	0	+
#Deleted in new
chr12	22742718	22743091	ENSG00000256923.1|AC084819.1|lncRNA|chr12:22742718:22743091:+	0	+
#Partially deleted in new
chr1	222748960	222749562	ENSG00000197520.10|FAM177B|pc|chr1:222748960:222749562:+	0	+
#Deleted in new
chr1	222749920	222750196	ENSG00000197520.10|FAM177B|pc|chr1:222749920:222750196:+	0	+
#Deleted in new
chr1	222749920	222750660	ENSG00000197520.10|FAM177B|pc|chr1:222749920:222750660:+	0	+
#Deleted in new
chr1	222749920	222750805	ENSG00000197520.10|FAM177B|pc|chr1:222749920:222750805:+	0	+
#Deleted in new
chr1	222823855	222823945	ENSG00000228106.5|AL392172.1|lncRNA|chr1:222823855:222823945:+	0	+
#Deleted in new
chr1	222823883	222823945	ENSG00000228106.5|AL392172.1|lncRNA|chr1:222823883:222823945:+	0	+
#Deleted in new
chr1	222823883	222823945	ENSG00000278610.1|AC093152.1|lncRNA|chr1:222823883:222823945:+	0	+
#Deleted in new
chr1	222836922	222837339	ENSG00000228106.5|AL392172.1|lncRNA|chr1:222836922:222837339:+	0	+
#Deleted in new
chr1	222836922	222837384	ENSG00000228106.5|AL392172.1|lncRNA|chr1:222836922:222837384:+	0	+
#Deleted in new
chr1	222836995	222837066	ENSG00000228106.5|AL392172.1|lncRNA|chr1:222836995:222837066:+	0	+
#Deleted in new
chr1	222836995	222837300	ENSG00000228106.5|AL392172.1|lncRNA|chr1:222836995:222837300:+	0	+
#Deleted in new
chr1	222836995	222837382	ENSG00000228106.5|AL392172.1|lncRNA|chr1:222836995:222837382:+	0	+
#Deleted in new
chr1	222836995	222837384	ENSG00000228106.5|AL392172.1|lncRNA|chr1:222836995:222837384:+	0	+
#Deleted in new
chr1	222837218	222837229	ENSG00000228106.5|AL392172.1|lncRNA|chr1:222837218:222837229:+	0	+
#Deleted in new
chr1	222837218	222837383	ENSG00000228106.5|AL392172.1|lncRNA|chr1:222837218:222837383:+	0	+
#Deleted in new
chr1	222837218	222837384	ENSG00000228106.5|AL392172.1|lncRNA|chr1:222837218:222837384:+	0	+
#Deleted in new
chr12	22869320	22869413	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22869320:22869413:+	0	+
#Deleted in new
chr12	22870425	22871078	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22870425:22871078:+	0	+
#Deleted in new
chr1	222872270	222872432	ENSG00000154309.8|DISP1|pc|chr1:222872270:222872432:+	0	+
#Deleted in new
chr12	2288667	2288937	ENSG00000256721.1|CACNA1C-IT3|lncRNA|chr12:2288667:2288937:+	0	+
#Deleted in new
chr12	22887963	22888021	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22887963:22888021:+	0	+
#Deleted in new
chr12	22887963	22888043	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22887963:22888043:+	0	+
#Deleted in new
chr12	22887963	22888044	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22887963:22888044:+	0	+
#Deleted in new
chr12	22888838	22888913	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22888838:22888913:+	0	+
#Deleted in new
chr12	22888838	22888933	ENSG00000256995.6|AC084816.1|lncRNA|chr12:22888838:22888933:+	0	+
#Deleted in new
chr1	222899780	222899865	ENSG00000278610.1|AC093152.1|lncRNA|chr1:222899780:222899865:+	0	+
#Deleted in new
chr1	222979622	222979862	ENSG00000154309.8|DISP1|pc|chr1:222979622:222979862:+	0	+
#Deleted in new
chr12	23021786	23021900	ENSG00000256995.6|AC084816.1|lncRNA|chr12:23021786:23021900:+	0	+
#Deleted in new
chr12	23038501	23038527	ENSG00000256995.6|AC084816.1|lncRNA|chr12:23038501:23038527:+	0	+
#Deleted in new
chr12	23054236	23054323	ENSG00000256995.6|AC084816.1|lncRNA|chr12:23054236:23054323:+	0	+
#Deleted in new
chr12	23057165	23057297	ENSG00000256995.6|AC084816.1|lncRNA|chr12:23057165:23057297:+	0	+
#Deleted in new
chr12	23057779	23057897	ENSG00000256995.6|AC084816.1|lncRNA|chr12:23057779:23057897:+	0	+
#Deleted in new
chr1	223141381	223141763	ENSG00000187554.11|TLR5|pc|chr1:223141381:223141763:-	0	-
#Deleted in new
chr1	223141647	223141763	ENSG00000187554.11|TLR5|pc|chr1:223141647:223141763:-	0	-
#Deleted in new
chr12	23173388	23174123	ENSG00000256995.6|AC084816.1|lncRNA|chr12:23173388:23174123:+	0	+
#Deleted in new
chr12	23173388	23174125	ENSG00000256995.6|AC084816.1|lncRNA|chr12:23173388:23174125:+	0	+
#Deleted in new
chr12	23175641	23175860	ENSG00000256321.5|AC087258.1|lncRNA|chr12:23175641:23175860:+	0	+
#Deleted in new
chr12	23175647	23175860	ENSG00000256321.5|AC087258.1|lncRNA|chr12:23175647:23175860:+	0	+
#Deleted in new
chr1	223181143	223181292	ENSG00000226601.1|AL359979.1|lncRNA|chr1:223181143:223181292:+	0	+
#Partially deleted in new
chr12	23181333	23182623	ENSG00000115934.11|AC087235.1|lncRNA|chr12:23181333:23182623:-	0	-
#Deleted in new
chr12	23185473	23185542	ENSG00000256321.5|AC087258.1|lncRNA|chr12:23185473:23185542:+	0	+
#Deleted in new
chr12	23185473	23185594	ENSG00000256321.5|AC087258.1|lncRNA|chr12:23185473:23185594:+	0	+
#Deleted in new
chr1	223186830	223186948	ENSG00000226601.1|AL359979.1|lncRNA|chr1:223186830:223186948:+	0	+
#Deleted in new
chr1	223187934	223188154	ENSG00000226601.1|AL359979.1|lncRNA|chr1:223187934:223188154:+	0	+
#Deleted in new
chr1	223234914	223235100	ENSG00000143502.14|SUSD4|pc|chr1:223234914:223235100:-	0	-
#Deleted in new
chr12	23251460	23251499	ENSG00000115934.11|AC087235.1|lncRNA|chr12:23251460:23251499:-	0	-
#Deleted in new
chr1	223538398	223538491	ENSG00000203697.11|CAPN8|pc|chr1:223538398:223538491:-	0	-
#Deleted in new
chr1	22364629	22366482	ENSG00000279625.1|AL591122.2|lncRNA|chr1:22364629:22366482:-	0	-
#Partially deleted in new
chr1	223701644	223701831	ENSG00000162909.17|CAPN2|pc|chr1:223701644:223701831:+	0	+
#Partially deleted in new
chr1	223749038	223749476	ENSG00000162909.17|CAPN2|pc|chr1:223749038:223749476:+	0	+
#Partially deleted in new
chr1	223757623	223759481	ENSG00000162909.17|CAPN2|pc|chr1:223757623:223759481:+	0	+
#Partially deleted in new
chr1	223758225	223759481	ENSG00000162909.17|CAPN2|pc|chr1:223758225:223759481:+	0	+
#Deleted in new
chr1	223818205	223818337	ENSG00000143514.16|TP53BP2|pc|chr1:223818205:223818337:-	0	-
#Deleted in new
chr1	223994261	223994349	ENSG00000278467.1|AC138393.3|lncRNA|chr1:223994261:223994349:+	0	+
#Deleted in new
chr1	224191091	224191156	ENSG00000143753.12|DEGS1|pc|chr1:224191091:224191156:+	0	+
#Partially deleted in new
chr1	224192895	224193157	ENSG00000143753.12|DEGS1|pc|chr1:224192895:224193157:+	0	+
#Deleted in new
chr1	224208746	224209011	ENSG00000232628.5|AC092809.2|lncRNA|chr1:224208746:224209011:-	0	-
#Deleted in new
chr1	224210240	224210412	ENSG00000232628.5|AC092809.2|lncRNA|chr1:224210240:224210412:-	0	-
#Deleted in new
chr1	224219612	224219902	ENSG00000237101.1|AC092809.4|lncRNA|chr1:224219612:224219902:+	0	+
#Deleted in new
chr1	224223413	224223828	ENSG00000237101.1|AC092809.4|lncRNA|chr1:224223413:224223828:+	0	+
#Deleted in new
chr12	24227710	24227818	ENSG00000256120.1|SOX5-AS1|lncRNA|chr12:24227710:24227818:+	0	+
#Deleted in new
chr1	224232088	224232182	ENSG00000143748.17|NVL|pc|chr1:224232088:224232182:-	0	-
#Deleted in new
chr1	224232894	224232972	ENSG00000143748.17|NVL|pc|chr1:224232894:224232972:-	0	-
#Partially deleted in new
chr12	24237821	24237965	ENSG00000256120.1|SOX5-AS1|lncRNA|chr12:24237821:24237965:+	0	+
#Deleted in new
chr1	224269731	224269915	ENSG00000143748.17|NVL|pc|chr1:224269731:224269915:-	0	-
#Deleted in new
chr1	224301690	224301771	ENSG00000143748.17|NVL|pc|chr1:224301690:224301771:-	0	-
#Deleted in new
chr1	224312539	224313155	ENSG00000143748.17|NVL|pc|chr1:224312539:224313155:-	0	-
#Deleted in new
chr1	224312726	224313151	ENSG00000143748.17|NVL|pc|chr1:224312726:224313151:-	0	-
#Deleted in new
chr1	224313033	224313151	ENSG00000143748.17|NVL|pc|chr1:224313033:224313151:-	0	-
#Deleted in new
chr1	224313049	224313151	ENSG00000143748.17|NVL|pc|chr1:224313049:224313151:-	0	-
#Deleted in new
chr1	224313049	224313155	ENSG00000143748.17|NVL|pc|chr1:224313049:224313155:-	0	-
#Deleted in new
chr1	224364108	224364455	ENSG00000143771.11|CNIH4|pc|chr1:224364108:224364455:+	0	+
#Partially deleted in new
chr1	224397726	224398226	ENSG00000162923.14|WDR26|pc|chr1:224397726:224398226:-	0	-
#Deleted in new
chr1	224402003	224402109	ENSG00000162923.14|WDR26|pc|chr1:224402003:224402109:-	0	-
#Deleted in new
chr1	224412908	224413335	ENSG00000162923.14|WDR26|pc|chr1:224412908:224413335:-	0	-
#Deleted in new
chr1	224413252	224413335	ENSG00000162923.14|WDR26|pc|chr1:224413252:224413335:-	0	-
#Deleted in new
chr1	224515740	224515876	ENSG00000143786.7|CNIH3|pc|chr1:224515740:224515876:+	0	+
#Deleted in new
chr1	224515861	224515876	ENSG00000143786.7|CNIH3|pc|chr1:224515861:224515876:+	0	+
#Partially deleted in new
chr1	224520999	224521221	ENSG00000143786.7|CNIH3|pc|chr1:224520999:224521221:+	0	+
#Partially deleted in new
chr1	224520999	224521222	ENSG00000143786.7|CNIH3|pc|chr1:224520999:224521222:+	0	+
#Deleted in new
chr1	224536935	224536981	ENSG00000143786.7|CNIH3|pc|chr1:224536935:224536981:+	0	+
#Deleted in new
chr1	224536935	224537582	ENSG00000143786.7|CNIH3|pc|chr1:224536935:224537582:+	0	+
#Deleted in new
chr12	24571533	24571657	ENSG00000197503.4|LINC00477|lncRNA|chr12:24571533:24571657:-	0	-
#Partially deleted in new
chr1	224611403	224611592	ENSG00000233384.2|AC096537.1|lncRNA|chr1:224611403:224611592:-	0	-
#Deleted in new
chr1	224664753	224664877	ENSG00000143786.7|CNIH3|pc|chr1:224664753:224664877:+	0	+
#Deleted in new
chr12	24704564	24704756	ENSG00000255745.1|AC023796.1|lncRNA|chr12:24704564:24704756:+	0	+
#Deleted in new
chr1	224718943	224719108	ENSG00000229400.1|AL596330.1|lncRNA|chr1:224718943:224719108:-	0	-
#Deleted in new
chr12	24767128	24767226	ENSG00000255745.1|AC023796.1|lncRNA|chr12:24767128:24767226:+	0	+
#Deleted in new
chr12	24773970	24774213	ENSG00000255745.1|AC023796.1|lncRNA|chr12:24773970:24774213:+	0	+
#Deleted in new
chr1	224896261	224896365	ENSG00000185842.15|DNAH14|pc|chr1:224896261:224896365:+	0	+
#Partially deleted in new
chr12	24902308	24904681	ENSG00000278969.1|AC026310.3|lncRNA|chr12:24902308:24904681:+	0	+
#Partially deleted in new
chr1	224929515	224929835	ENSG00000185842.15|DNAH14|pc|chr1:224929515:224929835:+	0	+
#Deleted in new
chr1	224929653	224929835	ENSG00000185842.15|DNAH14|pc|chr1:224929653:224929835:+	0	+
#Deleted in new
chr1	224929660	224929835	ENSG00000185842.15|DNAH14|pc|chr1:224929660:224929835:+	0	+
#Deleted in new
chr1	224929666	224929835	ENSG00000185842.15|DNAH14|pc|chr1:224929666:224929835:+	0	+
#Deleted in new
chr1	224929681	224929835	ENSG00000185842.15|DNAH14|pc|chr1:224929681:224929835:+	0	+
#Deleted in new
chr1	224929714	224929835	ENSG00000185842.15|DNAH14|pc|chr1:224929714:224929835:+	0	+
#Deleted in new
chr12	24945430	24945816	ENSG00000060982.14|BCAT1|pc|chr12:24945430:24945816:-	0	-
#Deleted in new
chr12	24948926	24949043	ENSG00000060982.14|BCAT1|pc|chr12:24948926:24949043:-	0	-
#Deleted in new
chr12	24948926	24949049	ENSG00000060982.14|BCAT1|pc|chr12:24948926:24949049:-	0	-
#Deleted in new
chr12	24948926	24949061	ENSG00000060982.14|BCAT1|pc|chr12:24948926:24949061:-	0	-
#Deleted in new
chr12	24948926	24949086	ENSG00000060982.14|BCAT1|pc|chr12:24948926:24949086:-	0	-
#Deleted in new
chr12	24948926	24949459	ENSG00000060982.14|BCAT1|pc|chr12:24948926:24949459:-	0	-
#Deleted in new
chr12	24949162	24949330	ENSG00000255921.1|AC026310.2|lncRNA|chr12:24949162:24949330:+	0	+
#Deleted in new
chr1	224952988	224953077	ENSG00000185842.15|DNAH14|pc|chr1:224952988:224953077:+	0	+
#Deleted in new
chr12	24957126	24957240	ENSG00000255921.1|AC026310.2|lncRNA|chr12:24957126:24957240:+	0	+
#Deleted in new
chr12	24957933	24958274	ENSG00000255921.1|AC026310.2|lncRNA|chr12:24957933:24958274:+	0	+
#Deleted in new
chr12	24960053	24960158	ENSG00000255921.1|AC026310.2|lncRNA|chr12:24960053:24960158:+	0	+
#Deleted in new
chr1	224961096	224961329	ENSG00000185842.15|DNAH14|pc|chr1:224961096:224961329:+	0	+
#Partially deleted in new
chr1	224968758	224969493	ENSG00000185842.15|DNAH14|pc|chr1:224968758:224969493:+	0	+
#Deleted in new
chr1	224969633	224969829	ENSG00000185842.15|DNAH14|pc|chr1:224969633:224969829:+	0	+
#Deleted in new
chr12	24993423	24994327	ENSG00000226397.8|C12orf77|lncRNA|chr12:24993423:24994327:-	0	-
#Deleted in new
chr12	24995062	24996067	ENSG00000226397.8|C12orf77|lncRNA|chr12:24995062:24996067:-	0	-
#Deleted in new
chr12	24995669	24996067	ENSG00000226397.8|C12orf77|lncRNA|chr12:24995669:24996067:-	0	-
#Deleted in new
chr12	24995806	24996067	ENSG00000226397.8|C12orf77|lncRNA|chr12:24995806:24996067:-	0	-
#Deleted in new
chr12	24996785	24996919	ENSG00000226397.8|C12orf77|lncRNA|chr12:24996785:24996919:-	0	-
#Deleted in new
chr12	24997231	24997439	ENSG00000226397.8|C12orf77|lncRNA|chr12:24997231:24997439:-	0	-
#Deleted in new
chr12	25005240	25005354	ENSG00000118308.15|LRMP|pc|chr12:25005240:25005354:+	0	+
#Deleted in new
chr12	25006266	25006403	ENSG00000226397.8|C12orf77|lncRNA|chr12:25006266:25006403:-	0	-
#Deleted in new
chr12	25011343	25011551	ENSG00000118308.15|LRMP|pc|chr12:25011343:25011551:+	0	+
#Deleted in new
chr12	25015181	25015261	ENSG00000118308.15|LRMP|pc|chr12:25015181:25015261:+	0	+
#Deleted in new
chr12	25015349	25015428	ENSG00000118308.15|LRMP|pc|chr12:25015349:25015428:+	0	+
#Partially deleted in new
chr12	25021001	25021045	ENSG00000118308.15|LRMP|pc|chr12:25021001:25021045:+	0	+
#Deleted in new
chr12	25023870	25023921	ENSG00000118308.15|LRMP|pc|chr12:25023870:25023921:+	0	+
#Deleted in new
chr12	25026788	25026866	ENSG00000118308.15|LRMP|pc|chr12:25026788:25026866:+	0	+
#Deleted in new
chr12	25030277	25030334	ENSG00000118308.15|LRMP|pc|chr12:25030277:25030334:+	0	+
#Deleted in new
chr12	25036584	25036631	ENSG00000118308.15|LRMP|pc|chr12:25036584:25036631:+	0	+
#Deleted in new
chr12	25036584	25036686	ENSG00000118308.15|LRMP|pc|chr12:25036584:25036686:+	0	+
#Deleted in new
chr12	25037973	25038018	ENSG00000118308.15|LRMP|pc|chr12:25037973:25038018:+	0	+
#Deleted in new
chr12	25037973	25038137	ENSG00000118308.15|LRMP|pc|chr12:25037973:25038137:+	0	+
#Deleted in new
chr12	25061591	25061653	ENSG00000118308.15|LRMP|pc|chr12:25061591:25061653:+	0	+
#Deleted in new
chr12	25090815	25091120	ENSG00000118308.15|LRMP|pc|chr12:25090815:25091120:+	0	+
#Deleted in new
chr12	25100879	25100980	ENSG00000258449.1|AC023510.1|lncRNA|chr12:25100879:25100980:-	0	-
#Deleted in new
chr12	25101937	25102025	ENSG00000118308.15|LRMP|pc|chr12:25101937:25102025:+	0	+
#Deleted in new
chr12	25185748	25185786	ENSG00000118307.18|CASC1|pc|chr12:25185748:25185786:-	0	-
#Deleted in new
chr12	25192693	25192826	ENSG00000118307.18|CASC1|pc|chr12:25192693:25192826:-	0	-
#Partially deleted in new
chr12	25194885	25195098	ENSG00000118307.18|CASC1|pc|chr12:25194885:25195098:-	0	-
#Deleted in new
chr12	25195057	25195127	ENSG00000118307.18|CASC1|pc|chr12:25195057:25195127:-	0	-
#Deleted in new
chr12	25195075	25195126	ENSG00000118307.18|CASC1|pc|chr12:25195075:25195126:-	0	-
#Deleted in new
chr12	25195075	25195130	ENSG00000118307.18|CASC1|pc|chr12:25195075:25195130:-	0	-
#Deleted in new
chr12	25195075	25195144	ENSG00000118307.18|CASC1|pc|chr12:25195075:25195144:-	0	-
#Deleted in new
chr12	25195075	25195157	ENSG00000118307.18|CASC1|pc|chr12:25195075:25195157:-	0	-
#Deleted in new
chr12	25195075	25195160	ENSG00000118307.18|CASC1|pc|chr12:25195075:25195160:-	0	-
#Deleted in new
chr12	25195075	25195162	ENSG00000118307.18|CASC1|pc|chr12:25195075:25195162:-	0	-
#Deleted in new
chr1	225250655	225250703	ENSG00000185842.15|DNAH14|pc|chr1:225250655:225250703:+	0	+
#Deleted in new
chr1	225250662	225250707	ENSG00000185842.15|DNAH14|pc|chr1:225250662:225250707:+	0	+
#Partially deleted in new
chr1	225395722	225398064	ENSG00000185842.15|DNAH14|pc|chr1:225395722:225398064:+	0	+
#Deleted in new
chr1	225428705	225428855	ENSG00000143815.14|LBR|pc|chr1:225428705:225428855:-	0	-
#Deleted in new
chr1	225428705	225428925	ENSG00000143815.14|LBR|pc|chr1:225428705:225428925:-	0	-
#Deleted in new
chr1	225465020	225465310	ENSG00000282418.1|AC092811.2|lncRNA|chr1:225465020:225465310:+	0	+
#Deleted in new
chr1	225465222	225465283	ENSG00000234476.1|AC092811.1|lncRNA|chr1:225465222:225465283:-	0	-
#Deleted in new
chr1	225465222	225465343	ENSG00000234476.1|AC092811.1|lncRNA|chr1:225465222:225465343:-	0	-
#Deleted in new
chr1	225473568	225473837	ENSG00000282418.1|AC092811.2|lncRNA|chr1:225473568:225473837:+	0	+
#Deleted in new
chr12	25476081	25476460	ENSG00000152936.10|LMNTD1|pc|chr12:25476081:25476460:-	0	-
#Deleted in new
chr12	25476109	25476460	ENSG00000152936.10|LMNTD1|pc|chr12:25476109:25476460:-	0	-
#Deleted in new
chr12	25476280	25476460	ENSG00000152936.10|LMNTD1|pc|chr12:25476280:25476460:-	0	-
#Deleted in new
chr12	25497512	25497794	ENSG00000152936.10|LMNTD1|pc|chr12:25497512:25497794:-	0	-
#Deleted in new
chr12	25502924	25503038	ENSG00000152936.10|LMNTD1|pc|chr12:25502924:25503038:-	0	-
#Deleted in new
chr12	25547224	25547351	ENSG00000152936.10|LMNTD1|pc|chr12:25547224:25547351:-	0	-
#Deleted in new
chr1	225580166	225580257	ENSG00000154380.17|ENAH|pc|chr1:225580166:225580257:-	0	-
#Deleted in new
chr12	25585993	25586098	ENSG00000257009.1|AC022367.1|lncRNA|chr12:25585993:25586098:-	0	-
#Deleted in new
chr12	25586009	25586112	ENSG00000257009.1|AC022367.1|lncRNA|chr12:25586009:25586112:-	0	-
#Deleted in new
chr12	25592494	25592925	ENSG00000257009.1|AC022367.1|lncRNA|chr12:25592494:25592925:-	0	-
#Deleted in new
chr12	25592494	25592928	ENSG00000257009.1|AC022367.1|lncRNA|chr12:25592494:25592928:-	0	-
#Deleted in new
chr12	25630594	25630750	ENSG00000152936.10|LMNTD1|pc|chr12:25630594:25630750:-	0	-
#Deleted in new
chr12	25648493	25648544	ENSG00000152936.10|LMNTD1|pc|chr12:25648493:25648544:-	0	-
#Deleted in new
chr12	25648493	25648554	ENSG00000152936.10|LMNTD1|pc|chr12:25648493:25648554:-	0	-
#Deleted in new
chr12	25648493	25648562	ENSG00000152936.10|LMNTD1|pc|chr12:25648493:25648562:-	0	-
#Deleted in new
chr12	25648493	25648579	ENSG00000152936.10|LMNTD1|pc|chr12:25648493:25648579:-	0	-
#Deleted in new
chr1	225735376	225735495	ENSG00000226349.1|AC099066.1|lncRNA|chr1:225735376:225735495:-	0	-
#Deleted in new
chr12	25782705	25783260	ENSG00000256686.1|AC019209.3|lncRNA|chr12:25782705:25783260:-	0	-
#Deleted in new
chr1	225786861	225786969	ENSG00000143742.12|SRP9|pc|chr1:225786861:225786969:+	0	+
#Deleted in new
chr1	225786861	225786985	ENSG00000143742.12|SRP9|pc|chr1:225786861:225786985:+	0	+
#Deleted in new
chr1	225810091	225810169	ENSG00000143819.12|EPHX1|pc|chr1:225810091:225810169:+	0	+
#Deleted in new
chr1	225810094	225810169	ENSG00000143819.12|EPHX1|pc|chr1:225810094:225810169:+	0	+
#Deleted in new
chr1	225810133	225810615	ENSG00000143819.12|EPHX1|pc|chr1:225810133:225810615:+	0	+
#Deleted in new
chr1	225810411	225810615	ENSG00000143819.12|EPHX1|pc|chr1:225810411:225810615:+	0	+
#Deleted in new
chr12	25831415	25831554	ENSG00000256440.1|AC019209.2|lncRNA|chr12:25831415:25831554:-	0	-
#Deleted in new
chr12	25833948	25834182	ENSG00000256440.1|AC019209.2|lncRNA|chr12:25833948:25834182:-	0	-
#Deleted in new
chr1	225848209	225848384	ENSG00000196187.11|TMEM63A|pc|chr1:225848209:225848384:-	0	-
#Deleted in new
chr12	25885724	25885855	ENSG00000256256.1|AC019209.1|lncRNA|chr12:25885724:25885855:-	0	-
#Deleted in new
chr1	225911118	225911382	ENSG00000243709.1|LEFTY1|pc|chr1:225911118:225911382:-	0	-
#Deleted in new
chr1	225936410	225936577	ENSG00000248322.1|AL117348.1|lncRNA|chr1:225936410:225936577:-	0	-
#Deleted in new
chr12	25939328	25939506	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25939328:25939506:-	0	-
#Deleted in new
chr12	25944856	25946135	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25944856:25946135:-	0	-
#Deleted in new
chr12	25947518	25947622	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25947518:25947622:-	0	-
#Deleted in new
chr12	25952757	25953076	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25952757:25953076:-	0	-
#Deleted in new
chr12	25952862	25953076	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25952862:25953076:-	0	-
#Deleted in new
chr12	25953007	25953076	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25953007:25953076:-	0	-
#Partially deleted in new
chr12	25954654	25955241	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25954654:25955241:-	0	-
#Partially deleted in new
chr12	25954804	25955241	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25954804:25955241:-	0	-
#Partially deleted in new
chr12	25954807	25955241	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25954807:25955241:-	0	-
#Partially deleted in new
chr12	25954920	25955241	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25954920:25955241:-	0	-
#Deleted in new
chr12	25955034	25955241	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25955034:25955241:-	0	-
#Deleted in new
chr12	25955137	25955241	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25955137:25955241:-	0	-
#Deleted in new
chr12	25956638	25956761	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25956638:25956761:-	0	-
#Deleted in new
chr12	25956638	25956764	ENSG00000246695.7|RASSF8-AS1|lncRNA|chr12:25956638:25956764:-	0	-
#Partially deleted in new
chr1	225982701	225985523	ENSG00000143751.9|SDE2|pc|chr1:225982701:225985523:-	0	-
#Deleted in new
chr12	26020144	26020468	ENSG00000123094.15|RASSF8|pc|chr12:26020144:26020468:+	0	+
#Deleted in new
chr12	26020144	26020504	ENSG00000123094.15|RASSF8|pc|chr12:26020144:26020504:+	0	+
#Deleted in new
chr12	26021439	26021518	ENSG00000123094.15|RASSF8|pc|chr12:26021439:26021518:+	0	+
#Deleted in new
chr12	26052563	26052602	ENSG00000123094.15|RASSF8|pc|chr12:26052563:26052602:+	0	+
#Partially deleted in new
chr12	26052563	26052996	ENSG00000123094.15|RASSF8|pc|chr12:26052563:26052996:+	0	+
#Deleted in new
chr12	26052568	26052602	ENSG00000123094.15|RASSF8|pc|chr12:26052568:26052602:+	0	+
#Deleted in new
chr12	26079032	26079073	ENSG00000123094.15|RASSF8|pc|chr12:26079032:26079073:+	0	+
#Deleted in new
chr12	26079032	26079892	ENSG00000123094.15|RASSF8|pc|chr12:26079032:26079892:+	0	+
#Deleted in new
chr1	226083638	226083968	ENSG00000225518.2|LINC01703|lncRNA|chr1:226083638:226083968:+	0	+
#Deleted in new
chr1	226083950	226083968	ENSG00000225518.2|LINC01703|lncRNA|chr1:226083950:226083968:+	0	+
#Deleted in new
chr1	226086795	226087053	ENSG00000225518.2|LINC01703|lncRNA|chr1:226086795:226087053:+	0	+
#Deleted in new
chr1	226086881	226087053	ENSG00000225518.2|LINC01703|lncRNA|chr1:226086881:226087053:+	0	+
#Deleted in new
chr1	226089489	226089496	ENSG00000225518.2|LINC01703|lncRNA|chr1:226089489:226089496:+	0	+
#Partially deleted in new
chr1	226148002	226148068	ENSG00000234478.1|ACBD3-AS1|lncRNA|chr1:226148002:226148068:+	0	+
#Deleted in new
chr12	26252867	26252920	ENSG00000123096.11|SSPN|pc|chr12:26252867:26252920:+	0	+
#Deleted in new
chr12	26315714	26315736	ENSG00000255858.1|AC055720.1|lncRNA|chr12:26315714:26315736:+	0	+
#Deleted in new
chr12	26326383	26326476	ENSG00000256234.1|AC022509.2|lncRNA|chr12:26326383:26326476:-	0	-
#Deleted in new
chr1	226392639	226392792	ENSG00000143799.12|PARP1|pc|chr1:226392639:226392792:-	0	-
#Deleted in new
chr1	226392916	226392980	ENSG00000143799.12|PARP1|pc|chr1:226392916:226392980:-	0	-
#Deleted in new
chr1	226392939	226392980	ENSG00000143799.12|PARP1|pc|chr1:226392939:226392980:-	0	-
#Partially deleted in new
chr12	26400656	26400851	ENSG00000255968.1|AC024145.1|lncRNA|chr12:26400656:26400851:+	0	+
#Deleted in new
chr12	2641457	2641759	ENSG00000151067.21|CACNA1C|pc|chr12:2641457:2641759:+	0	+
#Deleted in new
chr12	2641466	2641759	ENSG00000151067.21|CACNA1C|pc|chr12:2641466:2641759:+	0	+
#Deleted in new
chr12	26419775	26419849	ENSG00000255968.1|AC024145.1|lncRNA|chr12:26419775:26419849:+	0	+
#Deleted in new
chr12	26623368	26623402	ENSG00000234428.2|AC023051.1|lncRNA|chr12:26623368:26623402:+	0	+
#Deleted in new
chr12	26648752	26649479	ENSG00000234428.2|AC023051.1|lncRNA|chr12:26648752:26649479:+	0	+
#Deleted in new
chr1	226656639	226657274	ENSG00000228382.1|ITPKB-IT1|lncRNA|chr1:226656639:226657274:-	0	-
#Deleted in new
chr1	226656679	226657274	ENSG00000228382.1|ITPKB-IT1|lncRNA|chr1:226656679:226657274:-	0	-
#Deleted in new
chr1	226659586	226659670	ENSG00000228382.1|ITPKB-IT1|lncRNA|chr1:226659586:226659670:-	0	-
#Partially deleted in new
chr12	2668499	2669016	ENSG00000256271.1|CACNA1C-AS2|lncRNA|chr12:2668499:2669016:-	0	-
#Deleted in new
chr1	226707189	226707915	ENSG00000143772.9|ITPKB|pc|chr1:226707189:226707915:-	0	-
#Deleted in new
chr12	2680362	2680575	ENSG00000151067.21|CACNA1C|pc|chr12:2680362:2680575:+	0	+
#Deleted in new
chr1	226884622	226884682	ENSG00000143801.16|PSEN2|pc|chr1:226884622:226884682:+	0	+
#Partially deleted in new
chr1	226897535	226899555	ENSG00000163050.16|COQ8A|pc|chr1:226897535:226899555:+	0	+
#Deleted in new
chr1	226899404	226899555	ENSG00000163050.16|COQ8A|pc|chr1:226899404:226899555:+	0	+
#Deleted in new
chr1	226903501	226903799	ENSG00000163050.16|COQ8A|pc|chr1:226903501:226903799:+	0	+
#Deleted in new
chr1	226908521	226908683	ENSG00000163050.16|COQ8A|pc|chr1:226908521:226908683:+	0	+
#Deleted in new
chr1	226909701	226909794	ENSG00000163050.16|COQ8A|pc|chr1:226909701:226909794:+	0	+
#Deleted in new
chr1	226910588	226910757	ENSG00000163050.16|COQ8A|pc|chr1:226910588:226910757:+	0	+
#Deleted in new
chr1	226917526	226917660	ENSG00000163050.16|COQ8A|pc|chr1:226917526:226917660:+	0	+
#Deleted in new
chr12	26919040	26919069	ENSG00000064102.14|INTS13|pc|chr12:26919040:26919069:-	0	-
#Deleted in new
chr1	226939407	226939591	ENSG00000163050.16|COQ8A|pc|chr1:226939407:226939591:+	0	+
#Deleted in new
chr12	26977951	26978094	ENSG00000064115.10|TM7SF3|pc|chr12:26977951:26978094:-	0	-
#Partially deleted in new
chr12	26977993	26979582	ENSG00000247903.1|AC024896.1|lncRNA|chr12:26977993:26979582:+	0	+
#Deleted in new
chr12	26983492	26983596	ENSG00000064115.10|TM7SF3|pc|chr12:26983492:26983596:-	0	-
#Partially deleted in new
chr1	227004054	227005111	ENSG00000143776.18|CDC42BPA|pc|chr1:227004054:227005111:-	0	-
#Deleted in new
chr12	27012709	27013014	ENSG00000064115.10|TM7SF3|pc|chr12:27012709:27013014:-	0	-
#Deleted in new
chr12	27030157	27030272	ENSG00000152944.8|MED21|pc|chr12:27030157:27030272:+	0	+
#Deleted in new
chr12	27030259	27030673	ENSG00000152944.8|MED21|pc|chr12:27030259:27030673:+	0	+
#Deleted in new
chr12	27030733	27030756	ENSG00000152944.8|MED21|pc|chr12:27030733:27030756:+	0	+
#Partially deleted in new
chr12	27037099	27038960	ENSG00000275764.1|AC092747.4|lncRNA|chr12:27037099:27038960:+	0	+
#Deleted in new
chr12	27046151	27046232	ENSG00000152944.8|MED21|pc|chr12:27046151:27046232:+	0	+
#Deleted in new
chr12	27046153	27046232	ENSG00000152944.8|MED21|pc|chr12:27046153:27046232:+	0	+
#Deleted in new
chr12	27060826	27060993	ENSG00000152944.8|MED21|pc|chr12:27060826:27060993:+	0	+
#Deleted in new
chr12	2706251	2706298	ENSG00000256150.2|ITFG2-AS1|lncRNA|chr12:2706251:2706298:-	0	-
#Deleted in new
chr12	27105150	27105258	ENSG00000256226.1|AC092747.1|lncRNA|chr12:27105150:27105258:-	0	-
#Deleted in new
chr12	27148282	27148546	ENSG00000256226.1|AC092747.1|lncRNA|chr12:27148282:27148546:-	0	-
#Deleted in new
chr12	27161150	27161266	ENSG00000256226.1|AC092747.1|lncRNA|chr12:27161150:27161266:-	0	-
#Deleted in new
chr12	27161150	27161393	ENSG00000256226.1|AC092747.1|lncRNA|chr12:27161150:27161393:-	0	-
#Deleted in new
chr1	227178332	227178434	ENSG00000228625.1|AL451047.1|lncRNA|chr1:227178332:227178434:+	0	+
#Deleted in new
chr1	227180448	227180582	ENSG00000228625.1|AL451047.1|lncRNA|chr1:227180448:227180582:+	0	+
#Deleted in new
chr1	227182866	227183444	ENSG00000228625.1|AL451047.1|lncRNA|chr1:227182866:227183444:+	0	+
#Deleted in new
chr12	2726469	2726585	ENSG00000256150.2|ITFG2-AS1|lncRNA|chr12:2726469:2726585:-	0	-
#Deleted in new
chr12	27300553	27300601	ENSG00000211455.7|STK38L|pc|chr12:27300553:27300601:+	0	+
#Partially deleted in new
chr12	27333054	27333103	ENSG00000029153.14|ARNTL2|pc|chr12:27333054:27333103:+	0	+
#Deleted in new
chr12	27376345	27376387	ENSG00000029153.14|ARNTL2|pc|chr12:27376345:27376387:+	0	+
#Deleted in new
chr12	27377440	27377503	ENSG00000029153.14|ARNTL2|pc|chr12:27377440:27377503:+	0	+
#Partially deleted in new
chr12	27389788	27390168	ENSG00000245311.2|ARNTL2-AS1|lncRNA|chr12:27389788:27390168:-	0	-
#Partially deleted in new
chr12	27390394	27390489	ENSG00000245311.2|ARNTL2-AS1|lncRNA|chr12:27390394:27390489:-	0	-
#Deleted in new
chr1	227393590	227393704	ENSG00000234277.2|LINC01641|lncRNA|chr1:227393590:227393704:+	0	+
#Deleted in new
chr12	27394423	27394623	ENSG00000245311.2|ARNTL2-AS1|lncRNA|chr12:27394423:27394623:-	0	-
#Partially deleted in new
chr12	273953	277123	ENSG00000261799.1|AC007406.5|lncRNA|chr12:273953:277123:-	0	-
#Partially deleted in new
chr12	2740092	2740201	ENSG00000274659.1|LINC02371|lncRNA|chr12:2740092:2740201:+	0	+
#Deleted in new
chr12	27402618	27402677	ENSG00000029153.14|ARNTL2|pc|chr12:27402618:27402677:+	0	+
#Deleted in new
chr1	227409754	227409884	ENSG00000234277.2|LINC01641|lncRNA|chr1:227409754:227409884:+	0	+
#Deleted in new
chr1	227409764	227409884	ENSG00000234277.2|LINC01641|lncRNA|chr1:227409764:227409884:+	0	+
#Deleted in new
chr1	227425755	227426057	ENSG00000234277.2|LINC01641|lncRNA|chr1:227425755:227426057:+	0	+
#Partially deleted in new
chr12	2742625	2742789	ENSG00000256150.2|ITFG2-AS1|lncRNA|chr12:2742625:2742789:-	0	-
#Duplicated in new
chr1	227429404	227431035	ENSG00000234277.2|LINC01641|lncRNA|chr1:227429404:227431035:+	0	+
#Deleted in new
chr12	27446496	27446625	ENSG00000245311.2|ARNTL2-AS1|lncRNA|chr12:27446496:27446625:-	0	-
#Partially deleted in new
chr12	27493835	27494356	ENSG00000165935.9|SMCO2|pc|chr12:27493835:27494356:+	0	+
#Deleted in new
chr12	27552547	27552773	ENSG00000248100.2|AC087257.1|lncRNA|chr12:27552547:27552773:-	0	-
#Deleted in new
chr1	227582513	227582606	ENSG00000181450.17|ZNF678|pc|chr1:227582513:227582606:+	0	+
#Deleted in new
chr12	27599347	27599479	ENSG00000110841.13|PPFIBP1|pc|chr12:27599347:27599479:+	0	+
#Deleted in new
chr1	227650955	227651076	ENSG00000181450.17|ZNF678|pc|chr1:227650955:227651076:+	0	+
#Deleted in new
chr1	227650991	227651076	ENSG00000181450.17|ZNF678|pc|chr1:227650991:227651076:+	0	+
#Duplicated in new
chr1	227654335	227654768	ENSG00000181450.17|ZNF678|pc|chr1:227654335:227654768:+	0	+
#Split in new
chr1	227654335	227662461	ENSG00000181450.17|ZNF678|pc|chr1:227654335:227662461:+	0	+
#Split in new
chr1	227654335	227662462	ENSG00000181450.17|ZNF678|pc|chr1:227654335:227662462:+	0	+
#Partially deleted in new
chr12	27656615	27657123	ENSG00000110841.13|PPFIBP1|pc|chr12:27656615:27657123:+	0	+
#Deleted in new
chr1	227677178	227677443	ENSG00000181450.17|ZNF678|pc|chr1:227677178:227677443:+	0	+
#Deleted in new
chr12	27704322	27704411	ENSG00000256377.5|AC009509.1|lncRNA|chr12:27704322:27704411:-	0	-
#Deleted in new
chr12	27704567	27704690	ENSG00000256504.2|AC009509.2|lncRNA|chr12:27704567:27704690:+	0	+
#Deleted in new
chr12	27704737	27704924	ENSG00000256377.5|AC009509.1|lncRNA|chr12:27704737:27704924:-	0	-
#Deleted in new
chr12	27708059	27708365	ENSG00000256504.2|AC009509.2|lncRNA|chr12:27708059:27708365:+	0	+
#Deleted in new
chr12	27710598	27710731	ENSG00000256377.5|AC009509.1|lncRNA|chr12:27710598:27710731:-	0	-
#Deleted in new
chr12	27710598	27710770	ENSG00000256377.5|AC009509.1|lncRNA|chr12:27710598:27710770:-	0	-
#Deleted in new
chr12	2771852	2771907	ENSG00000256150.2|ITFG2-AS1|lncRNA|chr12:2771852:2771907:-	0	-
#Deleted in new
chr12	27725576	27725667	ENSG00000061794.12|MRPS35|pc|chr12:27725576:27725667:+	0	+
#Deleted in new
chr1	227728538	227728786	ENSG00000143740.14|SNAP47|pc|chr1:227728538:227728786:+	0	+
#Deleted in new
chr1	227728548	227728786	ENSG00000143740.14|SNAP47|pc|chr1:227728548:227728786:+	0	+
#Deleted in new
chr1	227728617	227728786	ENSG00000143740.14|SNAP47|pc|chr1:227728617:227728786:+	0	+
#Deleted in new
chr1	227728656	227728786	ENSG00000143740.14|SNAP47|pc|chr1:227728656:227728786:+	0	+
#Deleted in new
chr1	227728706	227728786	ENSG00000143740.14|SNAP47|pc|chr1:227728706:227728786:+	0	+
#Partially deleted in new
chr1	227730424	227732676	ENSG00000081692.12|JMJD4|pc|chr1:227730424:227732676:-	0	-
#Deleted in new
chr1	227731584	227731712	ENSG00000143740.14|SNAP47|pc|chr1:227731584:227731712:+	0	+
#Deleted in new
chr1	227731584	227731747	ENSG00000143740.14|SNAP47|pc|chr1:227731584:227731747:+	0	+
#Deleted in new
chr1	227743830	227744121	ENSG00000230005.2|SNAP47-AS1|lncRNA|chr1:227743830:227744121:-	0	-
#Deleted in new
chr1	227745774	227747191	ENSG00000230005.2|SNAP47-AS1|lncRNA|chr1:227745774:227747191:-	0	-
#Deleted in new
chr1	227770570	227770744	ENSG00000143740.14|SNAP47|pc|chr1:227770570:227770744:+	0	+
#Deleted in new
chr12	27779820	27779930	ENSG00000256747.1|AC009511.2|lncRNA|chr12:27779820:27779930:-	0	-
#Partially deleted in new
chr1	227780526	227781226	ENSG00000143740.14|SNAP47|pc|chr1:227780526:227781226:+	0	+
#Partially deleted in new
chr1	227780526	227781231	ENSG00000143740.14|SNAP47|pc|chr1:227780526:227781231:+	0	+
#Deleted in new
chr12	27797246	27797349	ENSG00000087448.9|KLHL42|pc|chr12:27797246:27797349:+	0	+
#Partially deleted in new
chr12	27800680	27800708	ENSG00000256512.1|AC009511.1|lncRNA|chr12:27800680:27800708:-	0	-
#Deleted in new
chr12	2801612	2801803	ENSG00000004478.7|FKBP4|pc|chr12:2801612:2801803:+	0	+
#Deleted in new
chr1	228088115	228088277	ENSG00000143761.15|ARF1|pc|chr1:228088115:228088277:+	0	+
#Deleted in new
chr1	228090487	228091071	ENSG00000143761.15|ARF1|pc|chr1:228090487:228091071:+	0	+
#Deleted in new
chr1	228096450	228096504	ENSG00000143761.15|ARF1|pc|chr1:228096450:228096504:+	0	+
#Partially deleted in new
chr1	228100725	228101254	ENSG00000143793.12|C1orf35|pc|chr1:228100725:228101254:-	0	-
#Partially deleted in new
chr1	228100730	228101254	ENSG00000143793.12|C1orf35|pc|chr1:228100730:228101254:-	0	-
#Partially deleted in new
chr1	228100732	228101254	ENSG00000143793.12|C1orf35|pc|chr1:228100732:228101254:-	0	-
#Partially deleted in new
chr1	228103133	228105411	ENSG00000143793.12|C1orf35|pc|chr1:228103133:228105411:-	0	-
#Partially deleted in new
chr1	228107976	228108084	ENSG00000162910.18|MRPL55|pc|chr1:228107976:228108084:-	0	-
#Partially deleted in new
chr1	228107976	228108137	ENSG00000162910.18|MRPL55|pc|chr1:228107976:228108137:-	0	-
#Deleted in new
chr1	228121522	228123771	ENSG00000280157.1|AL359510.2|lncRNA|chr1:228121522:228123771:+	0	+
#Partially deleted in new
chr1	228139961	228140159	ENSG00000143774.16|GUK1|pc|chr1:228139961:228140159:+	0	+
#Deleted in new
chr1	228141122	228141288	ENSG00000143774.16|GUK1|pc|chr1:228141122:228141288:+	0	+
#Deleted in new
chr1	228141122	228141829	ENSG00000143774.16|GUK1|pc|chr1:228141122:228141829:+	0	+
#Deleted in new
chr1	228141123	228141288	ENSG00000143774.16|GUK1|pc|chr1:228141123:228141288:+	0	+
#Deleted in new
chr1	228141123	228141507	ENSG00000143774.16|GUK1|pc|chr1:228141123:228141507:+	0	+
#Deleted in new
chr1	228141123	228141833	ENSG00000143774.16|GUK1|pc|chr1:228141123:228141833:+	0	+
#Deleted in new
chr1	228141131	228141288	ENSG00000143774.16|GUK1|pc|chr1:228141131:228141288:+	0	+
#Deleted in new
chr1	228141195	228141288	ENSG00000143774.16|GUK1|pc|chr1:228141195:228141288:+	0	+
#Deleted in new
chr1	228141248	228141288	ENSG00000143774.16|GUK1|pc|chr1:228141248:228141288:+	0	+
#Deleted in new
chr1	228141381	228141829	ENSG00000143774.16|GUK1|pc|chr1:228141381:228141829:+	0	+
#Deleted in new
chr1	228141625	228141829	ENSG00000143774.16|GUK1|pc|chr1:228141625:228141829:+	0	+
#Deleted in new
chr1	228141632	228141829	ENSG00000143774.16|GUK1|pc|chr1:228141632:228141829:+	0	+
#Partially deleted in new
chr1	228146025	228146235	ENSG00000143774.16|GUK1|pc|chr1:228146025:228146235:+	0	+
#Deleted in new
chr12	28146082	28146170	ENSG00000123106.10|CCDC91|pc|chr12:28146082:28146170:+	0	+
#Deleted in new
chr12	28146086	28146170	ENSG00000123106.10|CCDC91|pc|chr12:28146086:28146170:+	0	+
#Deleted in new
chr12	28163297	28163397	ENSG00000247934.4|AC022364.1|lncRNA|chr12:28163297:28163397:-	0	-
#Deleted in new
chr12	28164068	28164190	ENSG00000247934.4|AC022364.1|lncRNA|chr12:28164068:28164190:-	0	-
#Deleted in new
chr1	228164085	228164492	ENSG00000203684.5|IBA57-AS1|lncRNA|chr1:228164085:228164492:-	0	-
#Deleted in new
chr1	228164093	228164492	ENSG00000203684.5|IBA57-AS1|lncRNA|chr1:228164093:228164492:-	0	-
#Deleted in new
chr1	228164653	228164848	ENSG00000203684.5|IBA57-AS1|lncRNA|chr1:228164653:228164848:-	0	-
#Deleted in new
chr1	228165473	228165512	ENSG00000203684.5|IBA57-AS1|lncRNA|chr1:228165473:228165512:-	0	-
#Deleted in new
chr12	28167542	28167639	ENSG00000247934.4|AC022364.1|lncRNA|chr12:28167542:28167639:-	0	-
#Deleted in new
chr1	228171177	228173518	ENSG00000181873.12|IBA57|pc|chr1:228171177:228173518:+	0	+
#Partially deleted in new
chr1	228175121	228182257	ENSG00000181873.12|IBA57|pc|chr1:228175121:228182257:+	0	+
#Deleted in new
chr12	28183725	28183839	ENSG00000123106.10|CCDC91|pc|chr12:28183725:28183839:+	0	+
#Deleted in new
chr12	28185624	28186190	ENSG00000278733.1|AC022079.2|lncRNA|chr12:28185624:28186190:-	0	-
#Deleted in new
chr12	28191244	28191334	ENSG00000123106.10|CCDC91|pc|chr12:28191244:28191334:+	0	+
#Deleted in new
chr12	28198942	28199056	ENSG00000123106.10|CCDC91|pc|chr12:28198942:28199056:+	0	+
#Deleted in new
chr1	228203505	228204155	ENSG00000162913.9|OBSCN-AS1|pc|chr1:228203505:228204155:-	0	-
#Deleted in new
chr1	228203984	228204155	ENSG00000162913.9|OBSCN-AS1|pc|chr1:228203984:228204155:-	0	-
#Deleted in new
chr1	228204329	228204433	ENSG00000162913.9|OBSCN-AS1|pc|chr1:228204329:228204433:-	0	-
#Deleted in new
chr1	228204465	228206650	ENSG00000162913.9|OBSCN-AS1|pc|chr1:228204465:228206650:-	0	-
#Deleted in new
chr1	228205323	228205447	ENSG00000162913.9|OBSCN-AS1|pc|chr1:228205323:228205447:-	0	-
#Partially deleted in new
chr1	228209686	228209764	ENSG00000162913.9|OBSCN-AS1|pc|chr1:228209686:228209764:-	0	-
#Deleted in new
chr1	228217394	228217427	ENSG00000154358.20|OBSCN|pc|chr1:228217394:228217427:+	0	+
#Deleted in new
chr12	28225794	28225861	ENSG00000123106.10|CCDC91|pc|chr12:28225794:28225861:+	0	+
#Deleted in new
chr12	28226139	28226199	ENSG00000123106.10|CCDC91|pc|chr12:28226139:28226199:+	0	+
#Partially deleted in new
chr12	28236226	28236828	ENSG00000273989.1|AC022079.1|lncRNA|chr12:28236226:28236828:+	0	+
#Deleted in new
chr12	28256003	28256078	ENSG00000123106.10|CCDC91|pc|chr12:28256003:28256078:+	0	+
#Deleted in new
chr12	28268602	28268717	ENSG00000123106.10|CCDC91|pc|chr12:28268602:28268717:+	0	+
#Deleted in new
chr1	228295910	228296064	ENSG00000270110.1|AL353593.3|lncRNA|chr1:228295910:228296064:-	0	-
#Partially deleted in new
chr12	2835487	2835536	ENSG00000053702.14|NRIP2|pc|chr12:2835487:2835536:-	0	-
#Partially deleted in new
chr12	2835487	2835544	ENSG00000053702.14|NRIP2|pc|chr12:2835487:2835544:-	0	-
#Deleted in new
chr1	228356817	228356903	ENSG00000154358.20|OBSCN|pc|chr1:228356817:228356903:+	0	+
#Deleted in new
chr12	2836744	2836992	ENSG00000111203.11|ITFG2|pc|chr12:2836744:2836992:+	0	+
#Deleted in new
chr12	2836810	2836956	ENSG00000111203.11|ITFG2|pc|chr12:2836810:2836956:+	0	+
#Deleted in new
chr1	228384113	228384459	ENSG00000270104.1|AL670729.3|lncRNA|chr1:228384113:228384459:-	0	-
#Deleted in new
chr1	228384788	228385016	ENSG00000270104.1|AL670729.3|lncRNA|chr1:228384788:228385016:-	0	-
#Partially deleted in new
chr1	228394289	228394448	ENSG00000270094.1|AL670729.2|lncRNA|chr1:228394289:228394448:+	0	+
#Deleted in new
chr1	228407380	228407478	ENSG00000231563.1|AL670729.1|lncRNA|chr1:228407380:228407478:+	0	+
#Deleted in new
chr12	2840841	2840995	ENSG00000111203.11|ITFG2|pc|chr12:2840841:2840995:+	0	+
#Deleted in new
chr12	28412753	28412938	ENSG00000123106.10|CCDC91|pc|chr12:28412753:28412938:+	0	+
#Deleted in new
chr1	228486187	228487120	ENSG00000279306.1|AL139288.1|lncRNA|chr1:228486187:228487120:-	0	-
#Deleted in new
chr12	28571216	28571263	ENSG00000123106.10|CCDC91|pc|chr12:28571216:28571263:+	0	+
#Deleted in new
chr12	2857631	2857682	ENSG00000111203.11|ITFG2|pc|chr12:2857631:2857682:+	0	+
#Partially deleted in new
chr12	28579851	28579942	ENSG00000123106.10|CCDC91|pc|chr12:28579851:28579942:+	0	+
#Partially deleted in new
chr12	28579851	28579943	ENSG00000123106.10|CCDC91|pc|chr12:28579851:28579943:+	0	+
#Partially deleted in new
chr12	28579851	28579950	ENSG00000123106.10|CCDC91|pc|chr12:28579851:28579950:+	0	+
#Deleted in new
chr12	2861298	2861412	ENSG00000111206.12|FOXM1|pc|chr12:2861298:2861412:-	0	-
#Partially deleted in new
chr12	2863748	2864495	ENSG00000111206.12|FOXM1|pc|chr12:2863748:2864495:-	0	-
#Partially deleted in new
chr12	2876919	2876941	ENSG00000111206.12|FOXM1|pc|chr12:2876919:2876941:-	0	-
#Deleted in new
chr12	2877932	2878113	ENSG00000171792.10|RHNO1|pc|chr12:2877932:2878113:+	0	+
#Deleted in new
chr12	28821974	28822273	ENSG00000256513.1|AC022081.1|lncRNA|chr12:28821974:28822273:-	0	-
#Deleted in new
chr12	28825697	28825831	ENSG00000256513.1|AC022081.1|lncRNA|chr12:28825697:28825831:-	0	-
#Deleted in new
chr12	2885818	2885897	ENSG00000278356.1|AC005911.1|lncRNA|chr12:2885818:2885897:+	0	+
#Deleted in new
chr12	2886977	2887111	ENSG00000171792.10|RHNO1|pc|chr12:2886977:2887111:+	0	+
#Deleted in new
chr1	22891128	22891265	ENSG00000133216.16|EPHB2|pc|chr1:22891128:22891265:+	0	+
#Deleted in new
chr1	229022772	229022951	ENSG00000282111.1|AL137793.2|lncRNA|chr1:229022772:229022951:-	0	-
#Deleted in new
chr1	229037280	229037424	ENSG00000282111.1|AL137793.2|lncRNA|chr1:229037280:229037424:-	0	-
#Deleted in new
chr1	229037851	229037936	ENSG00000282111.1|AL137793.2|lncRNA|chr1:229037851:229037936:-	0	-
#Deleted in new
chr1	229038023	229038274	ENSG00000282111.1|AL137793.2|lncRNA|chr1:229038023:229038274:-	0	-
#Deleted in new
chr1	229094780	229094905	ENSG00000236975.1|AL137793.1|lncRNA|chr1:229094780:229094905:-	0	-
#Deleted in new
chr12	29143195	29143648	ENSG00000257258.1|AC012150.1|lncRNA|chr12:29143195:29143648:-	0	-
#Deleted in new
chr12	29171377	29172050	ENSG00000064763.10|FAR2|pc|chr12:29171377:29172050:+	0	+
#Deleted in new
chr1	229227260	229227562	ENSG00000233920.1|AL162595.2|lncRNA|chr1:229227260:229227562:-	0	-
#Deleted in new
chr1	229249635	229251810	ENSG00000177800.2|TMEM78|pc|chr1:229249635:229251810:+	0	+
#Deleted in new
chr1	229258280	229259120	ENSG00000177788.5|AL162595.1|lncRNA|chr1:229258280:229259120:-	0	-
#Partially deleted in new
chr1	229269365	229269627	ENSG00000177788.5|AL162595.1|lncRNA|chr1:229269365:229269627:-	0	-
#Deleted in new
chr1	229270975	229271003	ENSG00000177788.5|AL162595.1|lncRNA|chr1:229270975:229271003:-	0	-
#Deleted in new
chr1	229270975	229271028	ENSG00000177788.5|AL162595.1|lncRNA|chr1:229270975:229271028:-	0	-
#Deleted in new
chr12	29277396	29277882	ENSG00000275476.1|AC009318.4|lncRNA|chr12:29277396:29277882:-	0	-
#Deleted in new
chr12	29282163	29282360	ENSG00000257176.2|AC009318.1|lncRNA|chr12:29282163:29282360:-	0	-
#Deleted in new
chr12	29291415	29291494	ENSG00000064763.10|FAR2|pc|chr12:29291415:29291494:+	0	+
#Partially deleted in new
chr12	29292214	29292328	ENSG00000257176.2|AC009318.1|lncRNA|chr12:29292214:29292328:-	0	-
#Deleted in new
chr12	29301631	29302064	ENSG00000257176.2|AC009318.1|lncRNA|chr12:29301631:29302064:-	0	-
#Deleted in new
chr1	229304856	229305504	ENSG00000213029.3|SPHAR|pc|chr1:229304856:229305504:+	0	+
#Deleted in new
chr12	29309770	29309903	ENSG00000257176.2|AC009318.1|lncRNA|chr12:29309770:29309903:-	0	-
#Deleted in new
chr12	29317707	29317848	ENSG00000257176.2|AC009318.1|lncRNA|chr12:29317707:29317848:-	0	-
#Deleted in new
chr1	229319402	229319896	ENSG00000237481.1|AL117350.1|lncRNA|chr1:229319402:229319896:+	0	+
#Deleted in new
chr12	29331433	29331936	ENSG00000274315.1|AC009318.3|lncRNA|chr12:29331433:29331936:-	0	-
#Deleted in new
chr12	29372463	29372520	ENSG00000087502.17|ERGIC2|pc|chr12:29372463:29372520:-	0	-
#Deleted in new
chr12	29372854	29372967	ENSG00000087502.17|ERGIC2|pc|chr12:29372854:29372967:-	0	-
#Deleted in new
chr12	2940021	2940081	ENSG00000078246.16|TULP3|pc|chr12:2940021:2940081:+	0	+
#Deleted in new
chr12	2940194	2940338	ENSG00000078246.16|TULP3|pc|chr12:2940194:2940338:+	0	+
#Partially deleted in new
chr12	2940529	2941130	ENSG00000078246.16|TULP3|pc|chr12:2940529:2941130:+	0	+
#Deleted in new
chr12	29412473	29412544	ENSG00000187950.8|OVCH1|pc|chr12:29412473:29412544:-	0	-
#Deleted in new
chr12	29412629	29412725	ENSG00000187950.8|OVCH1|pc|chr12:29412629:29412725:-	0	-
#Deleted in new
chr12	29423126	29423298	ENSG00000187950.8|OVCH1|pc|chr12:29423126:29423298:-	0	-
#Deleted in new
chr12	29425924	29426064	ENSG00000257599.2|OVCH1-AS1|lncRNA|chr12:29425924:29426064:+	0	+
#Deleted in new
chr12	29427570	29427648	ENSG00000187950.8|OVCH1|pc|chr12:29427570:29427648:-	0	-
#Deleted in new
chr12	29433750	29433813	ENSG00000187950.8|OVCH1|pc|chr12:29433750:29433813:-	0	-
#Deleted in new
chr12	29439327	29439434	ENSG00000187950.8|OVCH1|pc|chr12:29439327:29439434:-	0	-
#Partially deleted in new
chr1	229440259	229442040	ENSG00000069248.11|NUP133|pc|chr1:229440259:229442040:-	0	-
#Partially deleted in new
chr1	229440283	229440566	ENSG00000226920.1|AL160004.1|lncRNA|chr1:229440283:229440566:-	0	-
#Deleted in new
chr12	29440530	29440744	ENSG00000187950.8|OVCH1|pc|chr12:29440530:29440744:-	0	-
#Deleted in new
chr1	229440825	229441020	ENSG00000226920.1|AL160004.1|lncRNA|chr1:229440825:229441020:-	0	-
#Deleted in new
chr12	29443360	29443500	ENSG00000187950.8|OVCH1|pc|chr12:29443360:29443500:-	0	-
#Deleted in new
chr12	29444144	29444236	ENSG00000187950.8|OVCH1|pc|chr12:29444144:29444236:-	0	-
#Deleted in new
chr12	29444144	29444268	ENSG00000187950.8|OVCH1|pc|chr12:29444144:29444268:-	0	-
#Deleted in new
chr12	29444144	29444280	ENSG00000187950.8|OVCH1|pc|chr12:29444144:29444280:-	0	-
#Deleted in new
chr12	29445277	29445403	ENSG00000187950.8|OVCH1|pc|chr12:29445277:29445403:-	0	-
#Partially deleted in new
chr1	229448771	229449190	ENSG00000069248.11|NUP133|pc|chr1:229448771:229449190:-	0	-
#Partially deleted in new
chr1	229450524	229451070	ENSG00000069248.11|NUP133|pc|chr1:229450524:229451070:-	0	-
#Deleted in new
chr12	29461733	29461934	ENSG00000257599.2|OVCH1-AS1|lncRNA|chr12:29461733:29461934:+	0	+
#Deleted in new
chr12	29461853	29462008	ENSG00000187950.8|OVCH1|pc|chr12:29461853:29462008:-	0	-
#Deleted in new
chr12	29464404	29464741	ENSG00000257599.2|OVCH1-AS1|lncRNA|chr12:29464404:29464741:+	0	+
#Deleted in new
chr12	29464506	29464702	ENSG00000187950.8|OVCH1|pc|chr12:29464506:29464702:-	0	-
#Deleted in new
chr12	29465146	29465219	ENSG00000187950.8|OVCH1|pc|chr12:29465146:29465219:-	0	-
#Deleted in new
chr12	29473028	29473103	ENSG00000187950.8|OVCH1|pc|chr12:29473028:29473103:-	0	-
#Deleted in new
chr12	29475060	29475189	ENSG00000187950.8|OVCH1|pc|chr12:29475060:29475189:-	0	-
#Deleted in new
chr12	29476205	29476299	ENSG00000187950.8|OVCH1|pc|chr12:29476205:29476299:-	0	-
#Deleted in new
chr12	29477101	29477232	ENSG00000187950.8|OVCH1|pc|chr12:29477101:29477232:-	0	-
#Deleted in new
chr12	29477340	29477473	ENSG00000187950.8|OVCH1|pc|chr12:29477340:29477473:-	0	-
#Deleted in new
chr12	29477534	29477578	ENSG00000187950.8|OVCH1|pc|chr12:29477534:29477578:-	0	-
#Deleted in new
chr12	29478834	29478908	ENSG00000187950.8|OVCH1|pc|chr12:29478834:29478908:-	0	-
#Deleted in new
chr12	29486245	29486348	ENSG00000187950.8|OVCH1|pc|chr12:29486245:29486348:-	0	-
#Deleted in new
chr12	29486885	29487288	ENSG00000257599.2|OVCH1-AS1|lncRNA|chr12:29486885:29487288:+	0	+
#Deleted in new
chr12	29486885	29487488	ENSG00000257599.2|OVCH1-AS1|lncRNA|chr12:29486885:29487488:+	0	+
#Deleted in new
chr12	29487692	29487882	ENSG00000187950.8|OVCH1|pc|chr12:29487692:29487882:-	0	-
#Deleted in new
chr12	29489619	29489771	ENSG00000187950.8|OVCH1|pc|chr12:29489619:29489771:-	0	-
#Deleted in new
chr12	29491096	29491192	ENSG00000187950.8|OVCH1|pc|chr12:29491096:29491192:-	0	-
#Deleted in new
chr12	29495284	29495457	ENSG00000187950.8|OVCH1|pc|chr12:29495284:29495457:-	0	-
#Deleted in new
chr12	29496180	29496278	ENSG00000187950.8|OVCH1|pc|chr12:29496180:29496278:-	0	-
#Deleted in new
chr12	29497622	29497686	ENSG00000187950.8|OVCH1|pc|chr12:29497622:29497686:-	0	-
#Deleted in new
chr1	229499166	229499220	ENSG00000069248.11|NUP133|pc|chr1:229499166:229499220:-	0	-
#Deleted in new
chr1	229508500	229508679	ENSG00000223635.1|AL121990.1|lncRNA|chr1:229508500:229508679:+	0	+
#Deleted in new
chr1	229510123	229510240	ENSG00000223635.1|AL121990.1|lncRNA|chr1:229510123:229510240:+	0	+
#Deleted in new
chr1	229513977	229514272	ENSG00000223635.1|AL121990.1|lncRNA|chr1:229513977:229514272:+	0	+
#Partially deleted in new
chr1	229518840	229519103	ENSG00000135776.4|ABCB10|pc|chr1:229518840:229519103:-	0	-
#Partially deleted in new
chr12	29529868	29529974	ENSG00000257456.1|AC009320.1|lncRNA|chr12:29529868:29529974:+	0	+
#Partially deleted in new
chr12	29532567	29536317	ENSG00000133687.15|TMTC1|pc|chr12:29532567:29536317:-	0	-
#Deleted in new
chr12	29568720	29568984	ENSG00000133687.15|TMTC1|pc|chr12:29568720:29568984:-	0	-
#Deleted in new
chr1	229606833	229606876	ENSG00000135801.9|TAF5L|pc|chr1:229606833:229606876:-	0	-
#Deleted in new
chr1	229607773	229607835	ENSG00000135801.9|TAF5L|pc|chr1:229607773:229607835:-	0	-
#Partially deleted in new
chr1	229626233	229626356	ENSG00000135763.9|URB2|pc|chr1:229626233:229626356:+	0	+
#Deleted in new
chr12	29640559	29641238	ENSG00000133687.15|TMTC1|pc|chr12:29640559:29641238:-	0	-
#Partially deleted in new
chr1	229875549	229875721	ENSG00000227043.1|LINC01682|lncRNA|chr1:229875549:229875721:-	0	-
#Deleted in new
chr1	229885539	229885752	ENSG00000227043.1|LINC01682|lncRNA|chr1:229885539:229885752:-	0	-
#Deleted in new
chr1	230006772	230007162	ENSG00000228058.1|LINC01736|lncRNA|chr1:230006772:230007162:+	0	+
#Deleted in new
chr1	230057989	230058078	ENSG00000143641.9|GALNT2|pc|chr1:230057989:230058078:+	0	+
#Deleted in new
chr1	230091588	230092033	ENSG00000143641.9|GALNT2|pc|chr1:230091588:230092033:+	0	+
#Deleted in new
chr1	23015771	23015850	ENSG00000227868.5|TEX46|pc|chr1:23015771:23015850:-	0	-
#Deleted in new
chr12	3017062	3017095	ENSG00000197905.8|TEAD4|pc|chr12:3017062:3017095:+	0	+
#Deleted in new
chr12	30200982	30201108	ENSG00000257262.1|AC023511.1|lncRNA|chr12:30200982:30201108:+	0	+
#Deleted in new
chr12	30208441	30208572	ENSG00000257262.1|AC023511.1|lncRNA|chr12:30208441:30208572:+	0	+
#Deleted in new
chr12	30230778	30231065	ENSG00000257756.5|LINC02386|lncRNA|chr12:30230778:30231065:-	0	-
#Deleted in new
chr12	30230784	30231035	ENSG00000257756.5|LINC02386|lncRNA|chr12:30230784:30231035:-	0	-
#Deleted in new
chr12	30244334	30244405	ENSG00000257756.5|LINC02386|lncRNA|chr12:30244334:30244405:-	0	-
#Deleted in new
chr1	230258693	230259087	ENSG00000227006.1|AL136988.2|lncRNA|chr1:230258693:230259087:-	0	-
#Deleted in new
chr1	230259477	230259763	ENSG00000227006.1|AL136988.2|lncRNA|chr1:230259477:230259763:-	0	-
#Partially deleted in new
chr1	230262921	230264972	ENSG00000143641.9|GALNT2|pc|chr1:230262921:230264972:+	0	+
#Deleted in new
chr1	230268302	230268483	ENSG00000227006.1|AL136988.2|lncRNA|chr1:230268302:230268483:-	0	-
#Deleted in new
chr12	30288408	30288463	ENSG00000257756.5|LINC02386|lncRNA|chr12:30288408:30288463:-	0	-
#Deleted in new
chr12	30294446	30294920	ENSG00000257756.5|LINC02386|lncRNA|chr12:30294446:30294920:-	0	-
#Split in new
chr1	230314481	230323620	ENSG00000177614.10|PGBD5|pc|chr1:230314481:230323620:-	0	-
#Deleted in new
chr12	30320833	30320898	ENSG00000257932.1|AC078776.1|lncRNA|chr12:30320833:30320898:+	0	+
#Deleted in new
chr12	30321120	30321617	ENSG00000257932.1|AC078776.1|lncRNA|chr12:30321120:30321617:+	0	+
#Deleted in new
chr1	230592659	230592840	ENSG00000232964.2|LINC01737|lncRNA|chr1:230592659:230592840:-	0	-
#Deleted in new
chr1	230595361	230595583	ENSG00000232964.2|LINC01737|lncRNA|chr1:230595361:230595583:-	0	-
#Deleted in new
chr1	230642810	230643040	ENSG00000135775.13|COG2|pc|chr1:230642810:230643040:+	0	+
#Partially deleted in new
chr1	230678912	230683428	ENSG00000135775.13|COG2|pc|chr1:230678912:230683428:+	0	+
#Deleted in new
chr12	30686320	30686659	ENSG00000133704.9|IPO8|pc|chr12:30686320:30686659:-	0	-
#Deleted in new
chr12	30686523	30686659	ENSG00000133704.9|IPO8|pc|chr12:30686523:30686659:-	0	-
#Deleted in new
chr12	30688359	30688746	ENSG00000133704.9|IPO8|pc|chr12:30688359:30688746:-	0	-
#Deleted in new
chr12	30688359	30688759	ENSG00000133704.9|IPO8|pc|chr12:30688359:30688759:-	0	-
#Deleted in new
chr12	30688692	30688756	ENSG00000133704.9|IPO8|pc|chr12:30688692:30688756:-	0	-
#Deleted in new
chr12	30688692	30688758	ENSG00000133704.9|IPO8|pc|chr12:30688692:30688758:-	0	-
#Deleted in new
chr12	30711738	30711782	ENSG00000110888.17|CAPRIN2|pc|chr12:30711738:30711782:-	0	-
#Partially deleted in new
chr12	30751421	30751655	ENSG00000110888.17|CAPRIN2|pc|chr12:30751421:30751655:-	0	-
#Partially deleted in new
chr12	30754582	30754630	ENSG00000110888.17|CAPRIN2|pc|chr12:30754582:30754630:-	0	-
#Deleted in new
chr1	230776080	230776748	ENSG00000244137.1|AL512328.1|lncRNA|chr1:230776080:230776748:-	0	-
#Deleted in new
chr1	230776100	230776748	ENSG00000244137.1|AL512328.1|lncRNA|chr1:230776100:230776748:-	0	-
#Deleted in new
chr1	230776849	230776990	ENSG00000244137.1|AL512328.1|lncRNA|chr1:230776849:230776990:-	0	-
#Deleted in new
chr12	30779385	30780739	ENSG00000246331.2|AC010198.1|lncRNA|chr12:30779385:30780739:+	0	+
#Deleted in new
chr12	30798144	30798315	ENSG00000235884.3|LINC00941|lncRNA|chr12:30798144:30798315:+	0	+
#Deleted in new
chr12	30799912	30800008	ENSG00000235884.3|LINC00941|lncRNA|chr12:30799912:30800008:+	0	+
#Deleted in new
chr12	30799912	30800021	ENSG00000235884.3|LINC00941|lncRNA|chr12:30799912:30800021:+	0	+
#Deleted in new
chr12	30800210	30800601	ENSG00000235884.3|LINC00941|lncRNA|chr12:30800210:30800601:+	0	+
#Deleted in new
chr12	30800533	30800601	ENSG00000235884.3|LINC00941|lncRNA|chr12:30800533:30800601:+	0	+
#Deleted in new
chr12	30801700	30801997	ENSG00000235884.3|LINC00941|lncRNA|chr12:30801700:30801997:+	0	+
#Deleted in new
chr12	30801700	30802711	ENSG00000235884.3|LINC00941|lncRNA|chr12:30801700:30802711:+	0	+
#Deleted in new
chr1	230823640	230823907	ENSG00000225656.1|AL118511.2|lncRNA|chr1:230823640:230823907:-	0	-
#Deleted in new
chr1	230824663	230824707	ENSG00000225656.1|AL118511.2|lncRNA|chr1:230824663:230824707:-	0	-
#Partially deleted in new
chr1	230869047	230869316	ENSG00000119280.16|C1orf198|pc|chr1:230869047:230869316:-	0	-
#Deleted in new
chr1	230874845	230875155	ENSG00000223393.1|AL118511.1|lncRNA|chr1:230874845:230875155:+	0	+
#Deleted in new
chr1	230878791	230879015	ENSG00000223393.1|AL118511.1|lncRNA|chr1:230878791:230879015:+	0	+
#Partially deleted in new
chr12	30953980	30955260	ENSG00000110900.14|TSPAN11|pc|chr12:30953980:30955260:+	0	+
#Deleted in new
chr1	230956420	230956560	ENSG00000143643.12|TTC13|pc|chr1:230956420:230956560:-	0	-
#Deleted in new
chr1	230990599	230990698	ENSG00000173409.13|ARV1|pc|chr1:230990599:230990698:+	0	+
#Deleted in new
chr1	230999622	230999801	ENSG00000173409.13|ARV1|pc|chr1:230999622:230999801:+	0	+
#Deleted in new
chr1	230999622	230999803	ENSG00000173409.13|ARV1|pc|chr1:230999622:230999803:+	0	+
#Partially deleted in new
chr1	230999622	230999867	ENSG00000173409.13|ARV1|pc|chr1:230999622:230999867:+	0	+
#Deleted in new
chr1	231025998	231026066	ENSG00000182118.7|FAM89A|pc|chr1:231025998:231026066:-	0	-
#Deleted in new
chr1	231028458	231028732	ENSG00000182118.7|FAM89A|pc|chr1:231028458:231028732:-	0	-
#Deleted in new
chr12	31050915	31051395	ENSG00000245614.3|DDX11-AS1|lncRNA|chr12:31050915:31051395:-	0	-
#Deleted in new
chr12	31060589	31060770	ENSG00000245614.3|DDX11-AS1|lncRNA|chr12:31060589:31060770:-	0	-
#Deleted in new
chr12	31060659	31060750	ENSG00000245614.3|DDX11-AS1|lncRNA|chr12:31060659:31060750:-	0	-
#Deleted in new
chr12	31060659	31060770	ENSG00000245614.3|DDX11-AS1|lncRNA|chr12:31060659:31060770:-	0	-
#Deleted in new
chr12	31073194	31073507	ENSG00000245614.3|DDX11-AS1|lncRNA|chr12:31073194:31073507:-	0	-
#Deleted in new
chr12	31073194	31073847	ENSG00000245614.3|DDX11-AS1|lncRNA|chr12:31073194:31073847:-	0	-
#Deleted in new
chr12	31073844	31074091	ENSG00000013573.16|DDX11|pc|chr12:31073844:31074091:+	0	+
#Deleted in new
chr12	31073859	31073969	ENSG00000013573.16|DDX11|pc|chr12:31073859:31073969:+	0	+
#Deleted in new
chr12	31073859	31074091	ENSG00000013573.16|DDX11|pc|chr12:31073859:31074091:+	0	+
#Deleted in new
chr12	31073867	31074091	ENSG00000013573.16|DDX11|pc|chr12:31073867:31074091:+	0	+
#Deleted in new
chr12	31073875	31074091	ENSG00000013573.16|DDX11|pc|chr12:31073875:31074091:+	0	+
#Deleted in new
chr12	31073878	31073969	ENSG00000013573.16|DDX11|pc|chr12:31073878:31073969:+	0	+
#Deleted in new
chr12	31073881	31074091	ENSG00000013573.16|DDX11|pc|chr12:31073881:31074091:+	0	+
#Deleted in new
chr12	31073890	31074091	ENSG00000013573.16|DDX11|pc|chr12:31073890:31074091:+	0	+
#Deleted in new
chr12	31073891	31074091	ENSG00000013573.16|DDX11|pc|chr12:31073891:31074091:+	0	+
#Deleted in new
chr12	31073893	31073969	ENSG00000013573.16|DDX11|pc|chr12:31073893:31073969:+	0	+
#Deleted in new
chr12	31073897	31074091	ENSG00000013573.16|DDX11|pc|chr12:31073897:31074091:+	0	+
#Deleted in new
chr12	31073901	31074091	ENSG00000013573.16|DDX11|pc|chr12:31073901:31074091:+	0	+
#Deleted in new
chr12	31073908	31074091	ENSG00000013573.16|DDX11|pc|chr12:31073908:31074091:+	0	+
#Deleted in new
chr12	31074219	31074327	ENSG00000013573.16|DDX11|pc|chr12:31074219:31074327:+	0	+
#Deleted in new
chr12	31074263	31074327	ENSG00000013573.16|DDX11|pc|chr12:31074263:31074327:+	0	+
#Partially deleted in new
chr12	31084797	31084911	ENSG00000013573.16|DDX11|pc|chr12:31084797:31084911:+	0	+
#Deleted in new
chr12	31086024	31086212	ENSG00000013573.16|DDX11|pc|chr12:31086024:31086212:+	0	+
#Partially deleted in new
chr12	31087575	31087983	ENSG00000013573.16|DDX11|pc|chr12:31087575:31087983:+	0	+
#Partially deleted in new
chr12	31087644	31087983	ENSG00000013573.16|DDX11|pc|chr12:31087644:31087983:+	0	+
#Partially deleted in new
chr12	31115202	31115703	ENSG00000177359.18|AC024940.1|pc|chr12:31115202:31115703:-	0	-
#Deleted in new
chr12	31117419	31117471	ENSG00000177359.18|AC024940.1|pc|chr12:31117419:31117471:-	0	-
#Deleted in new
chr12	31170407	31170504	ENSG00000177359.18|AC024940.1|pc|chr12:31170407:31170504:-	0	-
#Deleted in new
chr12	31172815	31172960	ENSG00000177359.18|AC024940.1|pc|chr12:31172815:31172960:-	0	-
#Deleted in new
chr12	31173513	31173574	ENSG00000177359.18|AC024940.1|pc|chr12:31173513:31173574:-	0	-
#Deleted in new
chr12	31177009	31177084	ENSG00000177359.18|AC024940.1|pc|chr12:31177009:31177084:-	0	-
#Deleted in new
chr1	231184097	231185236	ENSG00000235710.4|AL109810.2|pc|chr1:231184097:231185236:-	0	-
#Deleted in new
chr1	231186075	231186173	ENSG00000235710.4|AL109810.2|pc|chr1:231186075:231186173:-	0	-
#Deleted in new
chr1	231187516	231187627	ENSG00000235710.4|AL109810.2|pc|chr1:231187516:231187627:-	0	-
#Deleted in new
chr12	31194011	31194096	ENSG00000177359.18|AC024940.1|pc|chr12:31194011:31194096:-	0	-
#Deleted in new
chr12	31195520	31195541	ENSG00000177359.18|AC024940.1|pc|chr12:31195520:31195541:-	0	-
#Deleted in new
chr12	31206122	31206154	ENSG00000177359.18|AC024940.1|pc|chr12:31206122:31206154:-	0	-
#Partially deleted in new
chr1	231226385	231226825	ENSG00000143633.12|C1orf131|pc|chr1:231226385:231226825:-	0	-
#Deleted in new
chr1	231226390	231226492	ENSG00000143633.12|C1orf131|pc|chr1:231226390:231226492:-	0	-
#Deleted in new
chr1	231269862	231270056	ENSG00000116906.11|GNPAT|pc|chr1:231269862:231270056:+	0	+
#Deleted in new
chr12	31296909	31297044	ENSG00000139146.13|FAM60A|pc|chr12:31296909:31297044:-	0	-
#Deleted in new
chr12	31303494	31305123	ENSG00000139146.13|FAM60A|pc|chr12:31303494:31305123:-	0	-
#Partially deleted in new
chr12	31323943	31324162	ENSG00000139146.13|FAM60A|pc|chr12:31323943:31324162:-	0	-
#Deleted in new
chr1	23133464	23133679	ENSG00000169641.13|LUZP1|pc|chr1:23133464:23133679:-	0	-
#Deleted in new
chr1	231344622	231344714	ENSG00000010072.15|SPRTN|pc|chr1:231344622:231344714:+	0	+
#Deleted in new
chr12	31363480	31363795	ENSG00000256232.1|LINC02387|lncRNA|chr12:31363480:31363795:-	0	-
#Deleted in new
chr12	31500392	31500652	ENSG00000170456.15|DENND5B|pc|chr12:31500392:31500652:-	0	-
#Deleted in new
chr1	231522387	231522637	ENSG00000233461.5|AL445524.1|lncRNA|chr1:231522387:231522637:-	0	-
#Deleted in new
chr1	231522460	231522637	ENSG00000233461.5|AL445524.1|lncRNA|chr1:231522460:231522637:-	0	-
#Deleted in new
chr1	231522516	231522637	ENSG00000233461.5|AL445524.1|lncRNA|chr1:231522516:231522637:-	0	-
#Deleted in new
chr1	231524425	231524547	ENSG00000233461.5|AL445524.1|lncRNA|chr1:231524425:231524547:-	0	-
#Partially deleted in new
chr1	231527105	231527415	ENSG00000233461.5|AL445524.1|lncRNA|chr1:231527105:231527415:-	0	-
#Deleted in new
chr1	231527337	231527415	ENSG00000233461.5|AL445524.1|lncRNA|chr1:231527337:231527415:-	0	-
#Deleted in new
chr1	231527765	231527792	ENSG00000233461.5|AL445524.1|lncRNA|chr1:231527765:231527792:-	0	-
#Deleted in new
chr1	231528121	231528255	ENSG00000233461.5|AL445524.1|lncRNA|chr1:231528121:231528255:-	0	-
#Deleted in new
chr1	231528121	231528296	ENSG00000233461.5|AL445524.1|lncRNA|chr1:231528121:231528296:-	0	-
#Deleted in new
chr1	231528419	231528501	ENSG00000233461.5|AL445524.1|lncRNA|chr1:231528419:231528501:-	0	-
#Deleted in new
chr1	231528419	231528556	ENSG00000233461.5|AL445524.1|lncRNA|chr1:231528419:231528556:-	0	-
#Deleted in new
chr1	231528652	231528826	ENSG00000116918.13|TSNAX|pc|chr1:231528652:231528826:+	0	+
#Deleted in new
chr1	231528652	231528826	ENSG00000270106.5|TSNAX-DISC1|pc|chr1:231528652:231528826:+	0	+
#Deleted in new
chr1	231528654	231528826	ENSG00000116918.13|TSNAX|pc|chr1:231528654:231528826:+	0	+
#Deleted in new
chr1	231528666	231528826	ENSG00000116918.13|TSNAX|pc|chr1:231528666:231528826:+	0	+
#Partially deleted in new
chr1	231534119	231537327	ENSG00000116918.13|TSNAX|pc|chr1:231534119:231537327:+	0	+
#Deleted in new
chr12	31540919	31541031	ENSG00000170456.15|DENND5B|pc|chr12:31540919:31541031:-	0	-
#Deleted in new
chr1	231554620	231554694	ENSG00000116918.13|TSNAX|pc|chr1:231554620:231554694:+	0	+
#Deleted in new
chr1	231591291	231591800	ENSG00000229228.1|LINC00582|lncRNA|chr1:231591291:231591800:-	0	-
#Deleted in new
chr12	31601679	31601854	ENSG00000255867.1|DENND5B-AS1|lncRNA|chr12:31601679:31601854:+	0	+
#Deleted in new
chr12	31601684	31601854	ENSG00000255867.1|DENND5B-AS1|lncRNA|chr12:31601684:31601854:+	0	+
#Deleted in new
chr1	231616643	231616906	ENSG00000270106.5|TSNAX-DISC1|pc|chr1:231616643:231616906:+	0	+
#Deleted in new
chr12	31647159	31647255	ENSG00000139160.13|ETFBKMT|pc|chr12:31647159:31647255:+	0	+
#Deleted in new
chr12	31659186	31659362	ENSG00000139160.13|ETFBKMT|pc|chr12:31659186:31659362:+	0	+
#Deleted in new
chr12	31659687	31659789	ENSG00000139160.13|ETFBKMT|pc|chr12:31659687:31659789:+	0	+
#Deleted in new
chr12	31659687	31660069	ENSG00000139160.13|ETFBKMT|pc|chr12:31659687:31660069:+	0	+
#Deleted in new
chr12	31659710	31659935	ENSG00000139160.13|ETFBKMT|pc|chr12:31659710:31659935:+	0	+
#Deleted in new
chr12	31660795	31660983	ENSG00000139160.13|ETFBKMT|pc|chr12:31660795:31660983:+	0	+
#Partially deleted in new
chr12	31667646	31673114	ENSG00000139160.13|ETFBKMT|pc|chr12:31667646:31673114:+	0	+
#Deleted in new
chr12	31673551	31673638	ENSG00000151743.10|AMN1|pc|chr12:31673551:31673638:-	0	-
#Deleted in new
chr1	231684751	231685129	ENSG00000162946.21|DISC1|pc|chr1:231684751:231685129:+	0	+
#Deleted in new
chr12	31708569	31708917	ENSG00000151743.10|AMN1|pc|chr12:31708569:31708917:-	0	-
#Deleted in new
chr12	31708917	31709010	ENSG00000151743.10|AMN1|pc|chr12:31708917:31709010:-	0	-
#Deleted in new
chr12	31708957	31709167	ENSG00000151743.10|AMN1|pc|chr12:31708957:31709167:-	0	-
#Deleted in new
chr12	31709052	31709167	ENSG00000151743.10|AMN1|pc|chr12:31709052:31709167:-	0	-
#Deleted in new
chr12	31709079	31709167	ENSG00000151743.10|AMN1|pc|chr12:31709079:31709167:-	0	-
#Deleted in new
chr12	31709091	31709167	ENSG00000151743.10|AMN1|pc|chr12:31709091:31709167:-	0	-
#Partially deleted in new
chr12	31714440	31714631	ENSG00000151743.10|AMN1|pc|chr12:31714440:31714631:-	0	-
#Deleted in new
chr12	31719217	31719356	ENSG00000151743.10|AMN1|pc|chr12:31719217:31719356:-	0	-
#Partially deleted in new
chr1	231722538	231724074	ENSG00000162946.21|DISC1|pc|chr1:231722538:231724074:+	0	+
#Deleted in new
chr12	31728970	31729010	ENSG00000151743.10|AMN1|pc|chr12:31728970:31729010:-	0	-
#Deleted in new
chr12	31728970	31729019	ENSG00000151743.10|AMN1|pc|chr12:31728970:31729019:-	0	-
#Deleted in new
chr12	31728970	31729021	ENSG00000151743.10|AMN1|pc|chr12:31728970:31729021:-	0	-
#Deleted in new
chr12	31728970	31729057	ENSG00000151743.10|AMN1|pc|chr12:31728970:31729057:-	0	-
#Deleted in new
chr12	31728970	31729100	ENSG00000151743.10|AMN1|pc|chr12:31728970:31729100:-	0	-
#Deleted in new
chr12	31728970	31729110	ENSG00000151743.10|AMN1|pc|chr12:31728970:31729110:-	0	-
#Deleted in new
chr12	31728970	31729174	ENSG00000151743.10|AMN1|pc|chr12:31728970:31729174:-	0	-
#Deleted in new
chr12	31728990	31729121	ENSG00000151743.10|AMN1|pc|chr12:31728990:31729121:-	0	-
#Deleted in new
chr12	31729116	31731204	ENSG00000276900.1|AC023157.3|lncRNA|chr12:31729116:31731204:+	0	+
#Deleted in new
chr1	231774638	231774817	ENSG00000162946.21|DISC1|pc|chr1:231774638:231774817:+	0	+
#Deleted in new
chr1	231813229	231813381	ENSG00000162946.21|DISC1|pc|chr1:231813229:231813381:+	0	+
#Deleted in new
chr1	231854738	231855380	ENSG00000162946.21|DISC1|pc|chr1:231854738:231855380:+	0	+
#Deleted in new
chr12	31877078	31877893	ENSG00000255760.1|LINC02422|lncRNA|chr12:31877078:31877893:-	0	-
#Deleted in new
chr12	31887166	31887203	ENSG00000255760.1|LINC02422|lncRNA|chr12:31887166:31887203:-	0	-
#Deleted in new
chr1	231925833	231925950	ENSG00000226758.1|DISC1-IT1|lncRNA|chr1:231925833:231925950:+	0	+
#Deleted in new
chr1	231943748	231943959	ENSG00000226758.1|DISC1-IT1|lncRNA|chr1:231943748:231943959:+	0	+
#Deleted in new
chr1	231944922	231945233	ENSG00000226758.1|DISC1-IT1|lncRNA|chr1:231944922:231945233:+	0	+
#Deleted in new
chr12	31959369	31959491	ENSG00000174718.11|KIAA1551|pc|chr12:31959369:31959491:+	0	+
#Deleted in new
chr12	31959407	31959491	ENSG00000174718.11|KIAA1551|pc|chr12:31959407:31959491:+	0	+
#Deleted in new
chr12	31959418	31959491	ENSG00000174718.11|KIAA1551|pc|chr12:31959418:31959491:+	0	+
#Deleted in new
chr12	31959437	31959491	ENSG00000174718.11|KIAA1551|pc|chr12:31959437:31959491:+	0	+
#Deleted in new
chr12	31959448	31959491	ENSG00000174718.11|KIAA1551|pc|chr12:31959448:31959491:+	0	+
#Deleted in new
chr12	31959662	31959900	ENSG00000174718.11|KIAA1551|pc|chr12:31959662:31959900:+	0	+
#Deleted in new
chr12	31962488	31962544	ENSG00000174718.11|KIAA1551|pc|chr12:31962488:31962544:+	0	+
#Deleted in new
chr12	31970188	31970246	ENSG00000174718.11|KIAA1551|pc|chr12:31970188:31970246:+	0	+
#Deleted in new
chr12	31970188	31970356	ENSG00000174718.11|KIAA1551|pc|chr12:31970188:31970356:+	0	+
#Deleted in new
chr12	32000374	32001222	ENSG00000276136.1|AC016957.2|lncRNA|chr12:32000374:32001222:+	0	+
#Deleted in new
chr12	32104116	32104290	ENSG00000257530.1|AC048344.1|lncRNA|chr12:32104116:32104290:-	0	-
#Deleted in new
chr12	32104675	32104773	ENSG00000257530.1|AC048344.1|lncRNA|chr12:32104675:32104773:-	0	-
#Deleted in new
chr1	232160090	232160223	ENSG00000235152.1|AL353052.1|lncRNA|chr1:232160090:232160223:+	0	+
#Partially deleted in new
chr1	232174931	232175855	ENSG00000236372.1|AL353052.2|lncRNA|chr1:232174931:232175855:-	0	-
#Deleted in new
chr1	232178796	232180113	ENSG00000236372.1|AL353052.2|lncRNA|chr1:232178796:232180113:-	0	-
#Deleted in new
chr1	232185098	232185643	ENSG00000235152.1|AL353052.1|lncRNA|chr1:232185098:232185643:+	0	+
#Deleted in new
chr12	32511184	32511247	ENSG00000139132.14|FGD4|pc|chr12:32511184:32511247:+	0	+
#Deleted in new
chr12	32556873	32556995	ENSG00000139132.14|FGD4|pc|chr12:32556873:32556995:+	0	+
#Deleted in new
chr12	32574725	32574868	ENSG00000139132.14|FGD4|pc|chr12:32574725:32574868:+	0	+
#Deleted in new
chr12	32579596	32579640	ENSG00000139132.14|FGD4|pc|chr12:32579596:32579640:+	0	+
#Deleted in new
chr12	32624658	32624751	ENSG00000139132.14|FGD4|pc|chr12:32624658:32624751:+	0	+
#Deleted in new
chr12	32637649	32637855	ENSG00000139132.14|FGD4|pc|chr12:32637649:32637855:+	0	+
#Deleted in new
chr12	32709543	32709607	ENSG00000087470.17|DNM1L|pc|chr12:32709543:32709607:+	0	+
#Deleted in new
chr1	232718070	232718092	ENSG00000225919.1|LINC01745|lncRNA|chr1:232718070:232718092:+	0	+
#Deleted in new
chr1	232718669	232718888	ENSG00000225919.1|LINC01745|lncRNA|chr1:232718669:232718888:+	0	+
#Deleted in new
chr1	232722119	232722250	ENSG00000225919.1|LINC01745|lncRNA|chr1:232722119:232722250:+	0	+
#Partially deleted in new
chr1	232727253	232728689	ENSG00000236497.1|LINC01744|lncRNA|chr1:232727253:232728689:-	0	-
#Deleted in new
chr12	32728168	32729024	ENSG00000274105.1|AC084824.3|lncRNA|chr12:32728168:32729024:-	0	-
#Deleted in new
chr1	232730574	232730781	ENSG00000236497.1|LINC01744|lncRNA|chr1:232730574:232730781:-	0	-
#Deleted in new
chr1	232735700	232735750	ENSG00000236497.1|LINC01744|lncRNA|chr1:232735700:232735750:-	0	-
#Deleted in new
chr1	232742366	232742715	ENSG00000236497.1|LINC01744|lncRNA|chr1:232742366:232742715:-	0	-
#Partially deleted in new
chr12	32746543	32747363	ENSG00000139131.12|YARS2|pc|chr12:32746543:32747363:-	0	-
#Partially deleted in new
chr1	23284355	23284410	ENSG00000261326.2|LINC01355|lncRNA|chr1:23284355:23284410:-	0	-
#Deleted in new
chr1	232950841	232951132	ENSG00000135778.11|NTPCR|pc|chr1:232950841:232951132:+	0	+
#Deleted in new
chr1	232976301	232976459	ENSG00000135778.11|NTPCR|pc|chr1:232976301:232976459:+	0	+
#Deleted in new
chr1	232976341	232977528	ENSG00000135778.11|NTPCR|pc|chr1:232976341:232977528:+	0	+
#Deleted in new
chr1	23297796	23297877	ENSG00000284726.1|AL109936.8|lncRNA|chr1:23297796:23297877:+	0	+
#Deleted in new
chr12	32988762	32988891	ENSG00000257435.1|AC087311.2|lncRNA|chr12:32988762:32988891:+	0	+
#Deleted in new
chr1	233065460	233065661	ENSG00000135749.18|PCNX2|pc|chr1:233065460:233065661:-	0	-
#Deleted in new
chr1	233112844	233112966	ENSG00000135749.18|PCNX2|pc|chr1:233112844:233112966:-	0	-
#Deleted in new
chr1	233125903	233126206	ENSG00000135749.18|PCNX2|pc|chr1:233125903:233126206:-	0	-
#Deleted in new
chr1	233180747	233180996	ENSG00000135749.18|PCNX2|pc|chr1:233180747:233180996:-	0	-
#Deleted in new
chr1	233181032	233181102	ENSG00000135749.18|PCNX2|pc|chr1:233181032:233181102:-	0	-
#Deleted in new
chr1	233201491	233202250	ENSG00000135749.18|PCNX2|pc|chr1:233201491:233202250:-	0	-
#Partially deleted in new
chr1	2332125	2332753	ENSG00000116151.13|MORN1|pc|chr1:2332125:2332753:-	0	-
#Partially deleted in new
chr1	233372037	233374134	ENSG00000143674.10|MAP3K21|pc|chr1:233372037:233374134:+	0	+
#Deleted in new
chr12	33407797	33408318	ENSG00000110975.8|SYT10|pc|chr12:33407797:33408318:-	0	-
#Deleted in new
chr12	33408238	33408318	ENSG00000110975.8|SYT10|pc|chr12:33408238:33408318:-	0	-
#Deleted in new
chr12	33432310	33432853	ENSG00000273853.1|AC023158.2|lncRNA|chr12:33432310:33432853:-	0	-
#Deleted in new
chr1	233629557	233629914	ENSG00000135750.14|KCNK1|pc|chr1:233629557:233629914:+	0	+
#Deleted in new
chr1	233629606	233629914	ENSG00000135750.14|KCNK1|pc|chr1:233629606:233629914:+	0	+
#Deleted in new
chr1	233636523	233636581	ENSG00000135750.14|KCNK1|pc|chr1:233636523:233636581:+	0	+
#Deleted in new
chr1	233637287	233637434	ENSG00000135750.14|KCNK1|pc|chr1:233637287:233637434:+	0	+
#Deleted in new
chr1	233649940	233650049	ENSG00000135750.14|KCNK1|pc|chr1:233649940:233650049:+	0	+
#Deleted in new
chr1	233655694	233655801	ENSG00000135750.14|KCNK1|pc|chr1:233655694:233655801:+	0	+
#Deleted in new
chr1	233660473	233660666	ENSG00000135750.14|KCNK1|pc|chr1:233660473:233660666:+	0	+
#Deleted in new
chr1	233661855	233661936	ENSG00000135750.14|KCNK1|pc|chr1:233661855:233661936:+	0	+
#Deleted in new
chr12	3367832	3368124	ENSG00000257048.1|LINC02417|lncRNA|chr12:3367832:3368124:+	0	+
#Partially deleted in new
chr1	23383432	23384068	ENSG00000204219.9|TCEA3|pc|chr1:23383432:23384068:-	0	-
#Deleted in new
chr12	34029624	34029694	ENSG00000139133.6|ALG10|pc|chr12:34029624:34029694:+	0	+
#Deleted in new
chr12	34037437	34037648	ENSG00000256538.1|AC046130.2|lncRNA|chr12:34037437:34037648:+	0	+
#Deleted in new
chr12	34149838	34150170	ENSG00000255628.1|AC140847.1|lncRNA|chr12:34149838:34150170:+	0	+
#Deleted in new
chr12	34156180	34156320	ENSG00000255628.1|AC140847.1|lncRNA|chr12:34156180:34156320:+	0	+
#Deleted in new
chr12	34191278	34191432	ENSG00000255652.3|AC140847.2|lncRNA|chr12:34191278:34191432:-	0	-
#Deleted in new
chr12	34202456	34202582	ENSG00000255652.3|AC140847.2|lncRNA|chr12:34202456:34202582:-	0	-
#Deleted in new
chr12	34211873	34212021	ENSG00000255652.3|AC140847.2|lncRNA|chr12:34211873:34212021:-	0	-
#Deleted in new
chr12	34218780	34218853	ENSG00000255652.3|AC140847.2|lncRNA|chr12:34218780:34218853:-	0	-
#Partially deleted in new
chr1	234261705	234261859	ENSG00000231272.1|AL122008.1|lncRNA|chr1:234261705:234261859:+	0	+
#Deleted in new
chr1	234268582	234268823	ENSG00000236244.1|AL122008.4|lncRNA|chr1:234268582:234268823:-	0	-
#Deleted in new
chr1	234272353	234272500	ENSG00000236244.1|AL122008.4|lncRNA|chr1:234272353:234272500:-	0	-
#Deleted in new
chr1	234274167	234274465	ENSG00000231272.1|AL122008.1|lncRNA|chr1:234274167:234274465:+	0	+
#Deleted in new
chr1	234365503	234365828	ENSG00000236358.1|AL355472.3|lncRNA|chr1:234365503:234365828:+	0	+
#Deleted in new
chr1	234372185	234372811	ENSG00000273367.1|AL355472.4|lncRNA|chr1:234372185:234372811:+	0	+
#Deleted in new
chr1	234372806	234373210	ENSG00000231663.1|AL355472.1|lncRNA|chr1:234372806:234373210:-	0	-
#Deleted in new
chr1	234373422	234373593	ENSG00000231663.1|AL355472.1|lncRNA|chr1:234373422:234373593:-	0	-
#Deleted in new
chr1	234373455	234373678	ENSG00000168275.14|COA6|pc|chr1:234373455:234373678:+	0	+
#Deleted in new
chr1	234373467	234373678	ENSG00000168275.14|COA6|pc|chr1:234373467:234373678:+	0	+
#Deleted in new
chr1	234373682	234373840	ENSG00000168275.14|COA6|pc|chr1:234373682:234373840:+	0	+
#Partially deleted in new
chr1	234373700	234374389	ENSG00000168275.14|COA6|pc|chr1:234373700:234374389:+	0	+
#Deleted in new
chr1	234405311	234405480	ENSG00000059588.9|TARBP1|pc|chr1:234405311:234405480:-	0	-
#Partially deleted in new
chr1	234405902	234407955	ENSG00000059588.9|TARBP1|pc|chr1:234405902:234407955:-	0	-
#Partially deleted in new
chr1	234527890	234530342	ENSG00000231768.1|LINC01354|lncRNA|chr1:234527890:234530342:-	0	-
#Deleted in new
chr1	234529941	234530342	ENSG00000231768.1|LINC01354|lncRNA|chr1:234529941:234530342:-	0	-
#Deleted in new
chr1	234531015	234531181	ENSG00000231768.1|LINC01354|lncRNA|chr1:234531015:234531181:-	0	-
#Deleted in new
chr1	234531025	234531181	ENSG00000231768.1|LINC01354|lncRNA|chr1:234531025:234531181:-	0	-
#Deleted in new
chr1	234531527	234531765	ENSG00000231768.1|LINC01354|lncRNA|chr1:234531527:234531765:-	0	-
#Deleted in new
chr1	234531527	234531779	ENSG00000231768.1|LINC01354|lncRNA|chr1:234531527:234531779:-	0	-
#Deleted in new
chr1	234565297	234565422	ENSG00000230404.1|AL161640.1|lncRNA|chr1:234565297:234565422:+	0	+
#Deleted in new
chr1	234569823	234570088	ENSG00000230404.1|AL161640.1|lncRNA|chr1:234569823:234570088:+	0	+
#Deleted in new
chr1	234629310	234629747	ENSG00000224939.1|LINC00184|lncRNA|chr1:234629310:234629747:+	0	+
#Deleted in new
chr1	234632947	234634780	ENSG00000224939.1|LINC00184|lncRNA|chr1:234632947:234634780:+	0	+
#Deleted in new
chr1	234644665	234644746	ENSG00000272362.1|AL160408.5|lncRNA|chr1:234644665:234644746:+	0	+
#Deleted in new
chr1	234646288	234646505	ENSG00000228044.2|AL160408.1|lncRNA|chr1:234646288:234646505:+	0	+
#Deleted in new
chr1	234647126	234647571	ENSG00000272362.1|AL160408.5|lncRNA|chr1:234647126:234647571:+	0	+
#Deleted in new
chr1	234664841	234664903	ENSG00000241475.1|AL160408.4|lncRNA|chr1:234664841:234664903:+	0	+
#Partially deleted in new
chr1	234666331	234667104	ENSG00000241475.1|AL160408.4|lncRNA|chr1:234666331:234667104:+	0	+
#Deleted in new
chr1	234674095	234674126	ENSG00000228044.2|AL160408.1|lncRNA|chr1:234674095:234674126:+	0	+
#Deleted in new
chr1	234680810	234680925	ENSG00000228044.2|AL160408.1|lncRNA|chr1:234680810:234680925:+	0	+
#Deleted in new
chr1	234680810	234681122	ENSG00000228044.2|AL160408.1|lncRNA|chr1:234680810:234681122:+	0	+
#Deleted in new
chr1	234682691	234683176	ENSG00000228044.2|AL160408.1|lncRNA|chr1:234682691:234683176:+	0	+
#Deleted in new
chr1	234696057	234696153	ENSG00000230628.1|AL160408.3|lncRNA|chr1:234696057:234696153:-	0	-
#Deleted in new
chr1	234709382	234709438	ENSG00000282097.1|AL160408.6|lncRNA|chr1:234709382:234709438:+	0	+
#Deleted in new
chr1	234712704	234713116	ENSG00000282097.1|AL160408.6|lncRNA|chr1:234712704:234713116:+	0	+
#Partially deleted in new
chr1	234728347	234731643	ENSG00000227630.3|LINC01132|lncRNA|chr1:234728347:234731643:+	0	+
#Deleted in new
chr1	234757618	234760056	ENSG00000279261.2|AL360294.1|lncRNA|chr1:234757618:234760056:-	0	-
#Deleted in new
chr1	234757620	234760056	ENSG00000279261.2|AL360294.1|lncRNA|chr1:234757620:234760056:-	0	-
#Partially deleted in new
chr1	234959696	234959989	ENSG00000237520.1|AL391832.1|lncRNA|chr1:234959696:234959989:+	0	+
#Deleted in new
chr1	234959840	234959916	ENSG00000238005.2|AL391832.2|lncRNA|chr1:234959840:234959916:-	0	-
#Partially deleted in new
chr1	234968387	234968490	ENSG00000238005.2|AL391832.2|lncRNA|chr1:234968387:234968490:-	0	-
#Deleted in new
chr1	235065478	235065616	ENSG00000280587.1|FP700125.1|lncRNA|chr1:235065478:235065616:-	0	-
#Deleted in new
chr1	235104179	235104609	ENSG00000273416.1|AL732292.2|lncRNA|chr1:235104179:235104609:-	0	-
#Deleted in new
chr1	235156594	235156681	ENSG00000188739.14|RBM34|pc|chr1:235156594:235156681:-	0	-
#Deleted in new
chr1	235160194	235160248	ENSG00000188739.14|RBM34|pc|chr1:235160194:235160248:-	0	-
#Partially deleted in new
chr1	235228310	235229385	ENSG00000054267.21|ARID4B|pc|chr1:235228310:235229385:-	0	-
#Deleted in new
chr1	235367359	235367504	ENSG00000116957.12|TBCE|pc|chr1:235367359:235367504:+	0	+
#Deleted in new
chr1	235367359	235367552	ENSG00000116957.12|TBCE|pc|chr1:235367359:235367552:+	0	+
#Deleted in new
chr1	235367424	235367552	ENSG00000116957.12|TBCE|pc|chr1:235367424:235367552:+	0	+
#Deleted in new
chr1	235367454	235367504	ENSG00000116957.12|TBCE|pc|chr1:235367454:235367504:+	0	+
#Deleted in new
chr1	235418467	235418568	ENSG00000116957.12|TBCE|pc|chr1:235418467:235418568:+	0	+
#Partially deleted in new
chr1	235463457	235465714	ENSG00000162885.12|B3GALNT2|pc|chr1:235463457:235465714:-	0	-
#Partially deleted in new
chr1	235464895	235465714	ENSG00000162885.12|B3GALNT2|pc|chr1:235464895:235465714:-	0	-
#Deleted in new
chr1	235496185	235496308	ENSG00000162885.12|B3GALNT2|pc|chr1:235496185:235496308:-	0	-
#Deleted in new
chr1	23550764	23550915	ENSG00000235052.1|AL021154.1|lncRNA|chr1:23550764:23550915:-	0	-
#Deleted in new
chr1	235588868	235588959	ENSG00000168243.10|GNG4|pc|chr1:235588868:235588959:-	0	-
#Deleted in new
chr1	235828804	235829036	ENSG00000143669.13|LYST|pc|chr1:235828804:235829036:-	0	-
#Deleted in new
chr1	235839482	235839556	ENSG00000229463.2|LYST-AS1|lncRNA|chr1:235839482:235839556:+	0	+
#Partially deleted in new
chr1	235839735	235840182	ENSG00000229463.2|LYST-AS1|lncRNA|chr1:235839735:235840182:+	0	+
#Deleted in new
chr1	235943566	235943805	ENSG00000237845.1|AL139161.2|lncRNA|chr1:235943566:235943805:-	0	-
#Deleted in new
chr1	235957878	235958003	ENSG00000229291.1|AL139161.1|lncRNA|chr1:235957878:235958003:-	0	-
#Deleted in new
chr1	235971760	235971825	ENSG00000229291.1|AL139161.1|lncRNA|chr1:235971760:235971825:-	0	-
#Deleted in new
chr1	236221790	236221865	ENSG00000077585.13|GPR137B|pc|chr1:236221790:236221865:+	0	+
#Partially deleted in new
chr1	23626735	23627537	ENSG00000197880.8|MDS2|pc|chr1:23626735:23627537:+	0	+
#Deleted in new
chr1	23627333	23627537	ENSG00000197880.8|MDS2|pc|chr1:23627333:23627537:+	0	+
#Deleted in new
chr1	23627780	23627998	ENSG00000197880.8|MDS2|pc|chr1:23627780:23627998:+	0	+
#Deleted in new
chr1	23628506	23628597	ENSG00000197880.8|MDS2|pc|chr1:23628506:23628597:+	0	+
#Deleted in new
chr1	23629480	23629557	ENSG00000197880.8|MDS2|pc|chr1:23629480:23629557:+	0	+
#Deleted in new
chr1	2363060	2363628	ENSG00000272420.1|AL513477.2|lncRNA|chr1:2363060:2363628:-	0	-
#Deleted in new
chr1	236348256	236348284	ENSG00000186197.13|EDARADD|pc|chr1:236348256:236348284:+	0	+
#Deleted in new
chr1	236348261	236348284	ENSG00000186197.13|EDARADD|pc|chr1:236348261:236348284:+	0	+
#Deleted in new
chr1	236350703	236350839	ENSG00000186197.13|EDARADD|pc|chr1:236350703:236350839:+	0	+
#Deleted in new
chr1	23639108	23639251	ENSG00000197880.8|MDS2|pc|chr1:23639108:23639251:+	0	+
#Deleted in new
chr1	23639679	23639795	ENSG00000197880.8|MDS2|pc|chr1:23639679:23639795:+	0	+
#Deleted in new
chr1	23640388	23640549	ENSG00000197880.8|MDS2|pc|chr1:23640388:23640549:+	0	+
#Deleted in new
chr1	23640388	23640568	ENSG00000197880.8|MDS2|pc|chr1:23640388:23640568:+	0	+
#Partially deleted in new
chr12	3647942	3648613	ENSG00000130038.9|CRACR2A|pc|chr12:3647942:3648613:-	0	-
#Deleted in new
chr1	236518423	236518500	ENSG00000116977.18|LGALS8|pc|chr1:236518423:236518500:+	0	+
#Deleted in new
chr1	236536161	236536704	ENSG00000273058.2|AL359921.2|lncRNA|chr1:236536161:236536704:-	0	-
#Deleted in new
chr12	36601	37222	ENSG00000249054.2|FAM138D|lncRNA|chr12:36601:37222:-	0	-
#Deleted in new
chr12	36660	37529	ENSG00000249054.2|FAM138D|lncRNA|chr12:36660:37529:-	0	-
#Partially deleted in new
chr1	2371164	2372591	ENSG00000116151.13|MORN1|pc|chr1:2371164:2372591:-	0	-
#Deleted in new
chr1	2371675	2371905	ENSG00000116151.13|MORN1|pc|chr1:2371675:2371905:-	0	-
#Deleted in new
chr12	37324	37529	ENSG00000249054.2|FAM138D|lncRNA|chr12:37324:37529:-	0	-
#Deleted in new
chr12	3764564	3764819	ENSG00000130038.9|CRACR2A|pc|chr12:3764564:3764819:-	0	-
#Deleted in new
chr1	23772110	23772166	ENSG00000236810.5|ELOA-AS1|lncRNA|chr1:23772110:23772166:-	0	-
#Deleted in new
chr1	23772267	23772397	ENSG00000236810.5|ELOA-AS1|lncRNA|chr1:23772267:23772397:-	0	-
#Deleted in new
chr1	23772267	23772426	ENSG00000236810.5|ELOA-AS1|lncRNA|chr1:23772267:23772426:-	0	-
#Partially deleted in new
chr1	237784987	237785006	ENSG00000198626.15|RYR2|pc|chr1:237784987:237785006:+	0	+
#Partially deleted in new
chr1	23785191	23785311	ENSG00000057757.9|PITHD1|pc|chr1:23785191:23785311:+	0	+
#Deleted in new
chr1	237862174	237862205	ENSG00000237250.3|AL359924.1|lncRNA|chr1:237862174:237862205:+	0	+
#Deleted in new
chr1	237877863	237878382	ENSG00000116996.9|ZP4|pc|chr1:237877863:237878382:-	0	-
#Deleted in new
chr1	237905936	237906110	ENSG00000237250.3|AL359924.1|lncRNA|chr1:237905936:237906110:+	0	+
#Deleted in new
chr1	237906946	237907175	ENSG00000237250.3|AL359924.1|lncRNA|chr1:237906946:237907175:+	0	+
#Deleted in new
chr1	2379108	2379227	ENSG00000116151.13|MORN1|pc|chr1:2379108:2379227:-	0	-
#Deleted in new
chr1	237916232	237916396	ENSG00000237250.3|AL359924.1|lncRNA|chr1:237916232:237916396:+	0	+
#Duplicated in new
chr1	237926748	237928321	ENSG00000237250.3|AL359924.1|lncRNA|chr1:237926748:237928321:+	0	+
#Deleted in new
chr12	3798658	3798836	ENSG00000111224.13|PARP11|pc|chr12:3798658:3798836:-	0	-
#Deleted in new
chr1	23806699	23807040	ENSG00000117305.14|HMGCL|pc|chr1:23806699:23807040:-	0	-
#Deleted in new
chr1	23807153	23807285	ENSG00000117305.14|HMGCL|pc|chr1:23807153:23807285:-	0	-
#Deleted in new
chr1	23826083	23826183	ENSG00000117305.14|HMGCL|pc|chr1:23826083:23826183:-	0	-
#Deleted in new
chr1	238276036	238276159	ENSG00000234464.1|AL356010.2|lncRNA|chr1:238276036:238276159:+	0	+
#Deleted in new
chr12	38323912	38323982	ENSG00000175548.8|ALG10B|pc|chr12:38323912:38323982:+	0	+
#Deleted in new
chr1	23838063	23838620	ENSG00000117305.14|HMGCL|pc|chr1:23838063:23838620:-	0	-
#Deleted in new
chr1	238480383	238481681	ENSG00000215808.2|LINC01139|lncRNA|chr1:238480383:238481681:-	0	-
#Deleted in new
chr1	238485444	238485573	ENSG00000231877.1|AL359551.1|lncRNA|chr1:238485444:238485573:+	0	+
#Deleted in new
chr1	238485784	238486023	ENSG00000215808.2|LINC01139|lncRNA|chr1:238485784:238486023:-	0	-
#Deleted in new
chr1	238533448	238533512	ENSG00000231877.1|AL359551.1|lncRNA|chr1:238533448:238533512:+	0	+
#Deleted in new
chr12	38589329	38589430	ENSG00000258119.1|AC087897.2|lncRNA|chr12:38589329:38589430:-	0	-
#Deleted in new
chr12	38589714	38589812	ENSG00000258119.1|AC087897.2|lncRNA|chr12:38589714:38589812:-	0	-
#Deleted in new
chr12	3863835	3863957	ENSG00000111224.13|PARP11|pc|chr12:3863835:3863957:-	0	-
#Partially deleted in new
chr12	3871733	3871956	ENSG00000256862.1|AC005842.1|lncRNA|chr12:3871733:3871956:+	0	+
#Deleted in new
chr12	38720652	38721222	ENSG00000139117.13|CPNE8|pc|chr12:38720652:38721222:-	0	-
#Deleted in new
chr12	387247	387274	ENSG00000073614.12|KDM5A|pc|chr12:387247:387274:-	0	-
#Deleted in new
chr12	38726358	38726594	ENSG00000139117.13|CPNE8|pc|chr12:38726358:38726594:-	0	-
#Deleted in new
chr12	38909309	38909592	ENSG00000257718.1|AC067735.1|lncRNA|chr12:38909309:38909592:+	0	+
#Deleted in new
chr12	389971	390125	ENSG00000120647.9|CCDC77|pc|chr12:389971:390125:+	0	+
#Deleted in new
chr12	3905219	3905381	ENSG00000256862.1|AC005842.1|lncRNA|chr12:3905219:3905381:+	0	+
#Deleted in new
chr1	23907110	23907181	ENSG00000232557.3|AL590609.3|lncRNA|chr1:23907110:23907181:+	0	+
#Deleted in new
chr1	23907746	23907885	ENSG00000232557.3|AL590609.3|lncRNA|chr1:23907746:23907885:+	0	+
#Deleted in new
chr12	39092465	39092682	ENSG00000258144.1|LINC02406|lncRNA|chr12:39092465:39092682:-	0	-
#Deleted in new
chr12	39092825	39092874	ENSG00000258144.1|LINC02406|lncRNA|chr12:39092825:39092874:-	0	-
#Deleted in new
chr1	239247807	239250818	ENSG00000259776.1|AC093426.1|lncRNA|chr1:239247807:239250818:-	0	-
#Deleted in new
chr1	239408219	239408249	ENSG00000133019.11|CHRM3|pc|chr1:239408219:239408249:+	0	+
#Deleted in new
chr12	395123	395221	ENSG00000120647.9|CCDC77|pc|chr12:395123:395221:+	0	+
#Deleted in new
chr1	2395607	2395648	ENSG00000157916.19|RER1|pc|chr1:2395607:2395648:+	0	+
#Deleted in new
chr1	23959108	23959256	ENSG00000189266.11|PNRC2|pc|chr1:23959108:23959256:+	0	+
#Deleted in new
chr1	239606004	239606207	ENSG00000133019.11|CHRM3|pc|chr1:239606004:239606207:+	0	+
#Deleted in new
chr1	239629072	239629539	ENSG00000133019.11|CHRM3|pc|chr1:239629072:239629539:+	0	+
#Deleted in new
chr1	239703197	239703649	ENSG00000133019.11|CHRM3|pc|chr1:239703197:239703649:+	0	+
#Deleted in new
chr1	239706321	239706496	ENSG00000233355.6|CHRM3-AS2|lncRNA|chr1:239706321:239706496:-	0	-
#Deleted in new
chr1	239706424	239706496	ENSG00000233355.6|CHRM3-AS2|lncRNA|chr1:239706424:239706496:-	0	-
#Deleted in new
chr1	239714176	239714264	ENSG00000233355.6|CHRM3-AS2|lncRNA|chr1:239714176:239714264:-	0	-
#Deleted in new
chr1	239730400	239730455	ENSG00000233355.6|CHRM3-AS2|lncRNA|chr1:239730400:239730455:-	0	-
#Deleted in new
chr1	239730400	239730465	ENSG00000233355.6|CHRM3-AS2|lncRNA|chr1:239730400:239730465:-	0	-
#Deleted in new
chr12	39736709	39736899	ENSG00000180116.15|C12orf40|pc|chr12:39736709:39736899:+	0	+
#Deleted in new
chr12	39745859	39746046	ENSG00000180116.15|C12orf40|pc|chr12:39745859:39746046:+	0	+
#Deleted in new
chr12	39754255	39754332	ENSG00000180116.15|C12orf40|pc|chr12:39754255:39754332:+	0	+
#Deleted in new
chr12	39788587	39788668	ENSG00000180116.15|C12orf40|pc|chr12:39788587:39788668:+	0	+
#Deleted in new
chr12	39802259	39802382	ENSG00000180116.15|C12orf40|pc|chr12:39802259:39802382:+	0	+
#Deleted in new
chr1	239827251	239827378	ENSG00000133019.11|CHRM3|pc|chr1:239827251:239827378:+	0	+
#Deleted in new
chr12	39835680	39835760	ENSG00000151229.12|SLC2A13|pc|chr12:39835680:39835760:-	0	-
#Deleted in new
chr1	239899763	239899872	ENSG00000234601.1|CHRM3-AS1|lncRNA|chr1:239899763:239899872:-	0	-
#Deleted in new
chr12	39907633	39908300	ENSG00000180116.15|C12orf40|pc|chr12:39907633:39908300:+	0	+
#Deleted in new
chr1	239915438	239915830	ENSG00000231979.1|AL356361.2|lncRNA|chr1:239915438:239915830:-	0	-
#Deleted in new
chr1	239916904	239916955	ENSG00000231979.1|AL356361.2|lncRNA|chr1:239916904:239916955:-	0	-
#Deleted in new
chr1	240014347	240014435	ENSG00000155816.19|FMN2|pc|chr1:240014347:240014435:+	0	+
#Deleted in new
chr1	240068027	240068073	ENSG00000155816.19|FMN2|pc|chr1:240068027:240068073:+	0	+
#Partially deleted in new
chr12	40140925	40142876	ENSG00000260943.1|LINC02555|lncRNA|chr12:40140925:40142876:-	0	-
#Deleted in new
chr12	40166251	40166350	ENSG00000223914.2|LINC02471|lncRNA|chr12:40166251:40166350:+	0	+
#Deleted in new
chr12	40186008	40186183	ENSG00000225342.2|AC079630.1|lncRNA|chr12:40186008:40186183:-	0	-
#Deleted in new
chr12	40189082	40189205	ENSG00000225342.2|AC079630.1|lncRNA|chr12:40189082:40189205:-	0	-
#Deleted in new
chr12	40190252	40190394	ENSG00000225342.2|AC079630.1|lncRNA|chr12:40190252:40190394:-	0	-
#Deleted in new
chr12	40196743	40196773	ENSG00000188906.14|LRRK2|pc|chr12:40196743:40196773:+	0	+
#Deleted in new
chr12	40198205	40198388	ENSG00000223914.2|LINC02471|lncRNA|chr12:40198205:40198388:+	0	+
#Deleted in new
chr12	40198556	40198661	ENSG00000223914.2|LINC02471|lncRNA|chr12:40198556:40198661:+	0	+
#Deleted in new
chr12	40203451	40203844	ENSG00000223914.2|LINC02471|lncRNA|chr12:40203451:40203844:+	0	+
#Deleted in new
chr12	40207128	40207256	ENSG00000223914.2|LINC02471|lncRNA|chr12:40207128:40207256:+	0	+
#Deleted in new
chr12	40207540	40207623	ENSG00000223914.2|LINC02471|lncRNA|chr12:40207540:40207623:+	0	+
#Partially deleted in new
chr12	40207790	40211419	ENSG00000223914.2|LINC02471|lncRNA|chr12:40207790:40211419:+	0	+
#Deleted in new
chr12	4020976	4021081	ENSG00000256969.1|AC007207.2|lncRNA|chr12:4020976:4021081:+	0	+
#Deleted in new
chr1	240235770	240235895	ENSG00000155816.19|FMN2|pc|chr1:240235770:240235895:+	0	+
#Deleted in new
chr12	40300812	40301064	ENSG00000188906.14|LRRK2|pc|chr12:40300812:40301064:+	0	+
#Deleted in new
chr12	40395852	40395986	ENSG00000258167.1|AC107023.1|lncRNA|chr12:40395852:40395986:-	0	-
#Deleted in new
chr12	40400040	40400067	ENSG00000205592.13|MUC19|lncRNA|chr12:40400040:40400067:+	0	+
#Deleted in new
chr1	240400999	240401123	ENSG00000233519.1|AL590490.1|lncRNA|chr1:240400999:240401123:-	0	-
#Deleted in new
chr12	40406023	40406173	ENSG00000205592.13|MUC19|lncRNA|chr12:40406023:40406173:+	0	+
#Deleted in new
chr12	40408225	40408375	ENSG00000205592.13|MUC19|lncRNA|chr12:40408225:40408375:+	0	+
#Deleted in new
chr1	24040834	24040942	ENSG00000225315.2|AL591178.1|lncRNA|chr1:24040834:24040942:+	0	+
#Deleted in new
chr12	40412032	40412182	ENSG00000205592.13|MUC19|lncRNA|chr12:40412032:40412182:+	0	+
#Deleted in new
chr12	40414467	40414653	ENSG00000205592.13|MUC19|lncRNA|chr12:40414467:40414653:+	0	+
#Deleted in new
chr12	40414794	40414959	ENSG00000205592.13|MUC19|lncRNA|chr12:40414794:40414959:+	0	+
#Deleted in new
chr12	40415045	40415228	ENSG00000205592.13|MUC19|lncRNA|chr12:40415045:40415228:+	0	+
#Deleted in new
chr1	24042276	24042345	ENSG00000225315.2|AL591178.1|lncRNA|chr1:24042276:24042345:+	0	+
#Deleted in new
chr12	40450671	40450716	ENSG00000205592.13|MUC19|lncRNA|chr12:40450671:40450716:+	0	+
#Deleted in new
chr12	40458730	40458769	ENSG00000205592.13|MUC19|lncRNA|chr12:40458730:40458769:+	0	+
#Deleted in new
chr12	40460234	40460333	ENSG00000205592.13|MUC19|lncRNA|chr12:40460234:40460333:+	0	+
#Deleted in new
chr12	40463439	40463505	ENSG00000205592.13|MUC19|lncRNA|chr12:40463439:40463505:+	0	+
#Deleted in new
chr12	40464119	40464203	ENSG00000205592.13|MUC19|lncRNA|chr12:40464119:40464203:+	0	+
#Deleted in new
chr12	40464420	40464498	ENSG00000205592.13|MUC19|lncRNA|chr12:40464420:40464498:+	0	+
#Deleted in new
chr12	40465972	40466038	ENSG00000205592.13|MUC19|lncRNA|chr12:40465972:40466038:+	0	+
#Deleted in new
chr1	240472097	240472126	ENSG00000155816.19|FMN2|pc|chr1:240472097:240472126:+	0	+
#Deleted in new
chr12	40474759	40474861	ENSG00000205592.13|MUC19|lncRNA|chr12:40474759:40474861:+	0	+
#Deleted in new
chr12	40475095	40475197	ENSG00000205592.13|MUC19|lncRNA|chr12:40475095:40475197:+	0	+
#Deleted in new
chr12	40475569	40475665	ENSG00000205592.13|MUC19|lncRNA|chr12:40475569:40475665:+	0	+
#Split in new
chr12	40479052	40491305	ENSG00000205592.13|MUC19|lncRNA|chr12:40479052:40491305:+	0	+
#Deleted in new
chr12	40493946	40494012	ENSG00000205592.13|MUC19|lncRNA|chr12:40493946:40494012:+	0	+
#Deleted in new
chr12	40494118	40494172	ENSG00000205592.13|MUC19|lncRNA|chr12:40494118:40494172:+	0	+
#Deleted in new
chr12	40498243	40498297	ENSG00000205592.13|MUC19|lncRNA|chr12:40498243:40498297:+	0	+
#Deleted in new
chr12	40498952	40499006	ENSG00000205592.13|MUC19|lncRNA|chr12:40498952:40499006:+	0	+
#Deleted in new
chr12	40499403	40499448	ENSG00000205592.13|MUC19|lncRNA|chr12:40499403:40499448:+	0	+
#Deleted in new
chr12	40499696	40499750	ENSG00000205592.13|MUC19|lncRNA|chr12:40499696:40499750:+	0	+
#Deleted in new
chr12	40500174	40500228	ENSG00000205592.13|MUC19|lncRNA|chr12:40500174:40500228:+	0	+
#Deleted in new
chr12	40501152	40501206	ENSG00000205592.13|MUC19|lncRNA|chr12:40501152:40501206:+	0	+
#Deleted in new
chr12	40501357	40501411	ENSG00000205592.13|MUC19|lncRNA|chr12:40501357:40501411:+	0	+
#Deleted in new
chr12	40502042	40502096	ENSG00000205592.13|MUC19|lncRNA|chr12:40502042:40502096:+	0	+
#Deleted in new
chr12	40503477	40503531	ENSG00000205592.13|MUC19|lncRNA|chr12:40503477:40503531:+	0	+
#Deleted in new
chr12	40503665	40503719	ENSG00000205592.13|MUC19|lncRNA|chr12:40503665:40503719:+	0	+
#Deleted in new
chr12	40504391	40504445	ENSG00000205592.13|MUC19|lncRNA|chr12:40504391:40504445:+	0	+
#Deleted in new
chr12	40505113	40505167	ENSG00000205592.13|MUC19|lncRNA|chr12:40505113:40505167:+	0	+
#Deleted in new
chr12	40506078	40506132	ENSG00000205592.13|MUC19|lncRNA|chr12:40506078:40506132:+	0	+
#Deleted in new
chr12	40506263	40506317	ENSG00000205592.13|MUC19|lncRNA|chr12:40506263:40506317:+	0	+
#Deleted in new
chr12	40507002	40507056	ENSG00000205592.13|MUC19|lncRNA|chr12:40507002:40507056:+	0	+
#Deleted in new
chr12	40507212	40507266	ENSG00000205592.13|MUC19|lncRNA|chr12:40507212:40507266:+	0	+
#Deleted in new
chr12	40507840	40507898	ENSG00000205592.13|MUC19|lncRNA|chr12:40507840:40507898:+	0	+
#Deleted in new
chr12	40508016	40508068	ENSG00000205592.13|MUC19|lncRNA|chr12:40508016:40508068:+	0	+
#Deleted in new
chr12	40509033	40509087	ENSG00000205592.13|MUC19|lncRNA|chr12:40509033:40509087:+	0	+
#Deleted in new
chr12	40509958	40510012	ENSG00000205592.13|MUC19|lncRNA|chr12:40509958:40510012:+	0	+
#Deleted in new
chr12	40510168	40510222	ENSG00000205592.13|MUC19|lncRNA|chr12:40510168:40510222:+	0	+
#Deleted in new
chr12	40510796	40510850	ENSG00000205592.13|MUC19|lncRNA|chr12:40510796:40510850:+	0	+
#Deleted in new
chr12	40510970	40511024	ENSG00000205592.13|MUC19|lncRNA|chr12:40510970:40511024:+	0	+
#Deleted in new
chr12	40512167	40512221	ENSG00000205592.13|MUC19|lncRNA|chr12:40512167:40512221:+	0	+
#Deleted in new
chr12	40513528	40513582	ENSG00000205592.13|MUC19|lncRNA|chr12:40513528:40513582:+	0	+
#Deleted in new
chr12	40513730	40513784	ENSG00000205592.13|MUC19|lncRNA|chr12:40513730:40513784:+	0	+
#Deleted in new
chr12	40514389	40514443	ENSG00000205592.13|MUC19|lncRNA|chr12:40514389:40514443:+	0	+
#Deleted in new
chr12	40514974	40515028	ENSG00000205592.13|MUC19|lncRNA|chr12:40514974:40515028:+	0	+
#Deleted in new
chr12	40515173	40515218	ENSG00000205592.13|MUC19|lncRNA|chr12:40515173:40515218:+	0	+
#Deleted in new
chr12	40515441	40515495	ENSG00000205592.13|MUC19|lncRNA|chr12:40515441:40515495:+	0	+
#Deleted in new
chr12	40516100	40516145	ENSG00000205592.13|MUC19|lncRNA|chr12:40516100:40516145:+	0	+
#Deleted in new
chr12	40516413	40516467	ENSG00000205592.13|MUC19|lncRNA|chr12:40516413:40516467:+	0	+
#Deleted in new
chr12	40516613	40516667	ENSG00000205592.13|MUC19|lncRNA|chr12:40516613:40516667:+	0	+
#Deleted in new
chr12	40517852	40517906	ENSG00000205592.13|MUC19|lncRNA|chr12:40517852:40517906:+	0	+
#Deleted in new
chr12	40518510	40518543	ENSG00000205592.13|MUC19|lncRNA|chr12:40518510:40518543:+	0	+
#Deleted in new
chr12	40518805	40518859	ENSG00000205592.13|MUC19|lncRNA|chr12:40518805:40518859:+	0	+
#Deleted in new
chr12	40519002	40519056	ENSG00000205592.13|MUC19|lncRNA|chr12:40519002:40519056:+	0	+
#Deleted in new
chr12	40519918	40519972	ENSG00000205592.13|MUC19|lncRNA|chr12:40519918:40519972:+	0	+
#Deleted in new
chr12	40520426	40520456	ENSG00000205592.13|MUC19|lncRNA|chr12:40520426:40520456:+	0	+
#Deleted in new
chr12	40520578	40520777	ENSG00000205592.13|MUC19|lncRNA|chr12:40520578:40520777:+	0	+
#Deleted in new
chr12	40520723	40520777	ENSG00000205592.13|MUC19|lncRNA|chr12:40520723:40520777:+	0	+
#Deleted in new
chr12	40520914	40520968	ENSG00000205592.13|MUC19|lncRNA|chr12:40520914:40520968:+	0	+
#Deleted in new
chr12	40521473	40521527	ENSG00000205592.13|MUC19|lncRNA|chr12:40521473:40521527:+	0	+
#Deleted in new
chr12	40521624	40521679	ENSG00000205592.13|MUC19|lncRNA|chr12:40521624:40521679:+	0	+
#Deleted in new
chr12	40522484	40523445	ENSG00000205592.13|MUC19|lncRNA|chr12:40522484:40523445:+	0	+
#Deleted in new
chr12	40522642	40522696	ENSG00000205592.13|MUC19|lncRNA|chr12:40522642:40522696:+	0	+
#Deleted in new
chr12	40523391	40523445	ENSG00000205592.13|MUC19|lncRNA|chr12:40523391:40523445:+	0	+
#Deleted in new
chr12	40523588	40523642	ENSG00000205592.13|MUC19|lncRNA|chr12:40523588:40523642:+	0	+
#Deleted in new
chr12	40524515	40524569	ENSG00000205592.13|MUC19|lncRNA|chr12:40524515:40524569:+	0	+
#Deleted in new
chr12	40524515	40525621	ENSG00000205592.13|MUC19|lncRNA|chr12:40524515:40525621:+	0	+
#Deleted in new
chr12	40525071	40525107	ENSG00000205592.13|MUC19|lncRNA|chr12:40525071:40525107:+	0	+
#Deleted in new
chr12	40525382	40525430	ENSG00000205592.13|MUC19|lncRNA|chr12:40525382:40525430:+	0	+
#Deleted in new
chr12	40525567	40525621	ENSG00000205592.13|MUC19|lncRNA|chr12:40525567:40525621:+	0	+
#Deleted in new
chr12	40526272	40526326	ENSG00000205592.13|MUC19|lncRNA|chr12:40526272:40526326:+	0	+
#Deleted in new
chr12	40527095	40527149	ENSG00000205592.13|MUC19|lncRNA|chr12:40527095:40527149:+	0	+
#Deleted in new
chr12	40527095	40527787	ENSG00000205592.13|MUC19|lncRNA|chr12:40527095:40527787:+	0	+
#Deleted in new
chr12	40527290	40527344	ENSG00000205592.13|MUC19|lncRNA|chr12:40527290:40527344:+	0	+
#Deleted in new
chr12	40527754	40527787	ENSG00000205592.13|MUC19|lncRNA|chr12:40527754:40527787:+	0	+
#Deleted in new
chr12	40528054	40528110	ENSG00000205592.13|MUC19|lncRNA|chr12:40528054:40528110:+	0	+
#Deleted in new
chr12	40528056	40528110	ENSG00000205592.13|MUC19|lncRNA|chr12:40528056:40528110:+	0	+
#Deleted in new
chr12	40528256	40528307	ENSG00000205592.13|MUC19|lncRNA|chr12:40528256:40528307:+	0	+
#Deleted in new
chr12	40529176	40529230	ENSG00000205592.13|MUC19|lncRNA|chr12:40529176:40529230:+	0	+
#Deleted in new
chr12	40530272	40530320	ENSG00000205592.13|MUC19|lncRNA|chr12:40530272:40530320:+	0	+
#Deleted in new
chr12	40530457	40530511	ENSG00000205592.13|MUC19|lncRNA|chr12:40530457:40530511:+	0	+
#Deleted in new
chr12	40531056	40531110	ENSG00000205592.13|MUC19|lncRNA|chr12:40531056:40531110:+	0	+
#Deleted in new
chr12	40531056	40532282	ENSG00000205592.13|MUC19|lncRNA|chr12:40531056:40532282:+	0	+
#Deleted in new
chr12	40531208	40531262	ENSG00000205592.13|MUC19|lncRNA|chr12:40531208:40531262:+	0	+
#Deleted in new
chr12	40532028	40532082	ENSG00000205592.13|MUC19|lncRNA|chr12:40532028:40532082:+	0	+
#Deleted in new
chr12	40532228	40532282	ENSG00000205592.13|MUC19|lncRNA|chr12:40532228:40532282:+	0	+
#Deleted in new
chr12	40532983	40533078	ENSG00000205592.13|MUC19|lncRNA|chr12:40532983:40533078:+	0	+
#Deleted in new
chr12	40533024	40533078	ENSG00000205592.13|MUC19|lncRNA|chr12:40533024:40533078:+	0	+
#Deleted in new
chr12	40533232	40533283	ENSG00000205592.13|MUC19|lncRNA|chr12:40533232:40533283:+	0	+
#Deleted in new
chr12	40534155	40534209	ENSG00000205592.13|MUC19|lncRNA|chr12:40534155:40534209:+	0	+
#Deleted in new
chr12	40534710	40534743	ENSG00000205592.13|MUC19|lncRNA|chr12:40534710:40534743:+	0	+
#Deleted in new
chr12	40534710	40534803	ENSG00000205592.13|MUC19|lncRNA|chr12:40534710:40534803:+	0	+
#Deleted in new
chr12	40535012	40535066	ENSG00000205592.13|MUC19|lncRNA|chr12:40535012:40535066:+	0	+
#Deleted in new
chr12	40535203	40535257	ENSG00000205592.13|MUC19|lncRNA|chr12:40535203:40535257:+	0	+
#Deleted in new
chr12	40535764	40535809	ENSG00000205592.13|MUC19|lncRNA|chr12:40535764:40535809:+	0	+
#Deleted in new
chr12	40535905	40535959	ENSG00000205592.13|MUC19|lncRNA|chr12:40535905:40535959:+	0	+
#Deleted in new
chr12	40536439	40536484	ENSG00000205592.13|MUC19|lncRNA|chr12:40536439:40536484:+	0	+
#Deleted in new
chr12	40536922	40536976	ENSG00000205592.13|MUC19|lncRNA|chr12:40536922:40536976:+	0	+
#Deleted in new
chr12	40537395	40537402	ENSG00000205592.13|MUC19|lncRNA|chr12:40537395:40537402:+	0	+
#Deleted in new
chr12	40537395	40537428	ENSG00000205592.13|MUC19|lncRNA|chr12:40537395:40537428:+	0	+
#Deleted in new
chr12	40537661	40537715	ENSG00000205592.13|MUC19|lncRNA|chr12:40537661:40537715:+	0	+
#Deleted in new
chr12	40537853	40537907	ENSG00000205592.13|MUC19|lncRNA|chr12:40537853:40537907:+	0	+
#Deleted in new
chr12	40538793	40538847	ENSG00000205592.13|MUC19|lncRNA|chr12:40538793:40538847:+	0	+
#Deleted in new
chr12	40539528	40539561	ENSG00000205592.13|MUC19|lncRNA|chr12:40539528:40539561:+	0	+
#Deleted in new
chr12	40541618	40541623	ENSG00000205592.13|MUC19|lncRNA|chr12:40541618:40541623:+	0	+
#Deleted in new
chr12	40541618	40541672	ENSG00000205592.13|MUC19|lncRNA|chr12:40541618:40541672:+	0	+
#Deleted in new
chr12	40541814	40541868	ENSG00000205592.13|MUC19|lncRNA|chr12:40541814:40541868:+	0	+
#Deleted in new
chr12	40542273	40542306	ENSG00000205592.13|MUC19|lncRNA|chr12:40542273:40542306:+	0	+
#Deleted in new
chr12	40542561	40542615	ENSG00000205592.13|MUC19|lncRNA|chr12:40542561:40542615:+	0	+
#Deleted in new
chr12	40542764	40542818	ENSG00000205592.13|MUC19|lncRNA|chr12:40542764:40542818:+	0	+
#Deleted in new
chr12	40543788	40543842	ENSG00000205592.13|MUC19|lncRNA|chr12:40543788:40543842:+	0	+
#Deleted in new
chr12	40544351	40544384	ENSG00000205592.13|MUC19|lncRNA|chr12:40544351:40544384:+	0	+
#Deleted in new
chr12	40544547	40544692	ENSG00000205592.13|MUC19|lncRNA|chr12:40544547:40544692:+	0	+
#Deleted in new
chr12	40544638	40544692	ENSG00000205592.13|MUC19|lncRNA|chr12:40544638:40544692:+	0	+
#Deleted in new
chr12	40544829	40544883	ENSG00000205592.13|MUC19|lncRNA|chr12:40544829:40544883:+	0	+
#Deleted in new
chr12	40544930	40545097	ENSG00000205592.13|MUC19|lncRNA|chr12:40544930:40545097:+	0	+
#Deleted in new
chr12	40545049	40545097	ENSG00000205592.13|MUC19|lncRNA|chr12:40545049:40545097:+	0	+
#Deleted in new
chr12	40545335	40545398	ENSG00000205592.13|MUC19|lncRNA|chr12:40545335:40545398:+	0	+
#Deleted in new
chr12	40545955	40546003	ENSG00000205592.13|MUC19|lncRNA|chr12:40545955:40546003:+	0	+
#Deleted in new
chr12	40546395	40546449	ENSG00000205592.13|MUC19|lncRNA|chr12:40546395:40546449:+	0	+
#Deleted in new
chr12	40546602	40546656	ENSG00000205592.13|MUC19|lncRNA|chr12:40546602:40546656:+	0	+
#Deleted in new
chr12	40547134	40547182	ENSG00000205592.13|MUC19|lncRNA|chr12:40547134:40547182:+	0	+
#Deleted in new
chr12	40547476	40547622	ENSG00000205592.13|MUC19|lncRNA|chr12:40547476:40547622:+	0	+
#Deleted in new
chr12	40547771	40547825	ENSG00000205592.13|MUC19|lncRNA|chr12:40547771:40547825:+	0	+
#Deleted in new
chr12	40547994	40548004	ENSG00000205592.13|MUC19|lncRNA|chr12:40547994:40548004:+	0	+
#Deleted in new
chr12	40548577	40548626	ENSG00000205592.13|MUC19|lncRNA|chr12:40548577:40548626:+	0	+
#Deleted in new
chr12	40548577	40548631	ENSG00000205592.13|MUC19|lncRNA|chr12:40548577:40548631:+	0	+
#Deleted in new
chr12	40549596	40549644	ENSG00000205592.13|MUC19|lncRNA|chr12:40549596:40549644:+	0	+
#Deleted in new
chr12	40549895	40549949	ENSG00000205592.13|MUC19|lncRNA|chr12:40549895:40549949:+	0	+
#Deleted in new
chr12	40550104	40550158	ENSG00000205592.13|MUC19|lncRNA|chr12:40550104:40550158:+	0	+
#Deleted in new
chr12	40550481	40550535	ENSG00000205592.13|MUC19|lncRNA|chr12:40550481:40550535:+	0	+
#Deleted in new
chr12	40550680	40550734	ENSG00000205592.13|MUC19|lncRNA|chr12:40550680:40550734:+	0	+
#Deleted in new
chr12	40550686	40550734	ENSG00000205592.13|MUC19|lncRNA|chr12:40550686:40550734:+	0	+
#Deleted in new
chr12	405510	405564	ENSG00000120647.9|CCDC77|pc|chr12:405510:405564:+	0	+
#Deleted in new
chr12	40557144	40557195	ENSG00000205592.13|MUC19|lncRNA|chr12:40557144:40557195:+	0	+
#Deleted in new
chr12	40557463	40557517	ENSG00000205592.13|MUC19|lncRNA|chr12:40557463:40557517:+	0	+
#Deleted in new
chr12	40557817	40557871	ENSG00000205592.13|MUC19|lncRNA|chr12:40557817:40557871:+	0	+
#Deleted in new
chr12	40557842	40557871	ENSG00000205592.13|MUC19|lncRNA|chr12:40557842:40557871:+	0	+
#Deleted in new
chr12	40558092	40558134	ENSG00000205592.13|MUC19|lncRNA|chr12:40558092:40558134:+	0	+
#Deleted in new
chr12	40559234	40559288	ENSG00000205592.13|MUC19|lncRNA|chr12:40559234:40559288:+	0	+
#Deleted in new
chr12	40560535	40560579	ENSG00000205592.13|MUC19|lncRNA|chr12:40560535:40560579:+	0	+
#Deleted in new
chr12	40560535	40560589	ENSG00000205592.13|MUC19|lncRNA|chr12:40560535:40560589:+	0	+
#Deleted in new
chr12	40561003	40561054	ENSG00000205592.13|MUC19|lncRNA|chr12:40561003:40561054:+	0	+
#Deleted in new
chr12	40567725	40567833	ENSG00000205592.13|MUC19|lncRNA|chr12:40567725:40567833:+	0	+
#Deleted in new
chr1	240588521	240589175	ENSG00000231440.1|AL358176.4|lncRNA|chr1:240588521:240589175:-	0	-
#Deleted in new
chr1	240590727	240590748	ENSG00000231440.1|AL358176.4|lncRNA|chr1:240590727:240590748:-	0	-
#Deleted in new
chr1	24066773	24066842	ENSG00000230703.1|AL591178.2|lncRNA|chr1:24066773:24066842:+	0	+
#Deleted in new
chr1	240739418	240739853	ENSG00000230015.3|AL365184.2|lncRNA|chr1:240739418:240739853:-	0	-
#Deleted in new
chr12	40763095	40763198	ENSG00000018236.14|CNTN1|pc|chr12:40763095:40763198:+	0	+
#Deleted in new
chr1	240765556	240765599	ENSG00000226919.1|AL365184.1|lncRNA|chr1:240765556:240765599:+	0	+
#Duplicated in new
chr1	240768151	240768680	ENSG00000226919.1|AL365184.1|lncRNA|chr1:240768151:240768680:+	0	+
#Partially deleted in new
chr1	24081749	24081850	ENSG00000230703.1|AL591178.2|lncRNA|chr1:24081749:24081850:+	0	+
#Deleted in new
chr1	24083274	24083565	ENSG00000230703.1|AL591178.2|lncRNA|chr1:24083274:24083565:+	0	+
#Deleted in new
chr1	24083945	24084132	ENSG00000142661.18|MYOM3|pc|chr1:24083945:24084132:-	0	-
#Deleted in new
chr12	40895949	40896109	ENSG00000018236.14|CNTN1|pc|chr12:40895949:40896109:+	0	+
#Deleted in new
chr1	2409677	2410004	ENSG00000157911.9|PEX10|pc|chr1:2409677:2410004:-	0	-
#Deleted in new
chr12	41005038	41005110	ENSG00000018236.14|CNTN1|pc|chr12:41005038:41005110:+	0	+
#Deleted in new
chr1	2413596	2413797	ENSG00000157911.9|PEX10|pc|chr1:2413596:2413797:-	0	-
#Deleted in new
chr12	41413012	41413086	ENSG00000257228.5|AC090531.1|lncRNA|chr12:41413012:41413086:-	0	-
#Deleted in new
chr1	241424291	241424549	ENSG00000225554.1|AL359764.1|lncRNA|chr1:241424291:241424549:+	0	+
#Deleted in new
chr1	241424397	241424549	ENSG00000225554.1|AL359764.1|lncRNA|chr1:241424397:241424549:+	0	+
#Deleted in new
chr1	241424625	241424714	ENSG00000225554.1|AL359764.1|lncRNA|chr1:241424625:241424714:+	0	+
#Deleted in new
chr1	241433171	241433328	ENSG00000225554.1|AL359764.1|lncRNA|chr1:241433171:241433328:+	0	+
#Deleted in new
chr1	241433171	241433492	ENSG00000225554.1|AL359764.1|lncRNA|chr1:241433171:241433492:+	0	+
#Deleted in new
chr12	41473364	41473510	ENSG00000257228.5|AC090531.1|lncRNA|chr12:41473364:41473510:-	0	-
#Duplicated in new
chr1	241497602	241497970	ENSG00000091483.6|FH|pc|chr1:241497602:241497970:-	0	-
#Deleted in new
chr1	241536462	241536564	ENSG00000117009.11|KMO|pc|chr1:241536462:241536564:+	0	+
#Deleted in new
chr1	241536471	241536564	ENSG00000117009.11|KMO|pc|chr1:241536471:241536564:+	0	+
#Deleted in new
chr1	241600379	241600653	ENSG00000054277.13|OPN3|pc|chr1:241600379:241600653:-	0	-
#Deleted in new
chr1	241600805	241601178	ENSG00000054277.13|OPN3|pc|chr1:241600805:241601178:-	0	-
#Deleted in new
chr1	241601131	241601178	ENSG00000054277.13|OPN3|pc|chr1:241601131:241601178:-	0	-
#Partially deleted in new
chr1	241614042	241614164	ENSG00000054277.13|OPN3|pc|chr1:241614042:241614164:-	0	-
#Deleted in new
chr1	241615853	241615936	ENSG00000054277.13|OPN3|pc|chr1:241615853:241615936:-	0	-
#Deleted in new
chr12	41764188	41764265	ENSG00000257784.1|LINC02400|lncRNA|chr12:41764188:41764265:+	0	+
#Deleted in new
chr12	41764222	41764265	ENSG00000257784.1|LINC02400|lncRNA|chr12:41764222:41764265:+	0	+
#Deleted in new
chr1	241854572	241854781	ENSG00000174371.16|EXO1|pc|chr1:241854572:241854781:+	0	+
#Deleted in new
chr1	24187801	24187959	ENSG00000185436.11|IFNLR1|pc|chr1:24187801:24187959:-	0	-
#Deleted in new
chr1	241892523	241892620	ENSG00000174371.16|EXO1|pc|chr1:241892523:241892620:+	0	+
#Deleted in new
chr1	241895003	241895148	ENSG00000174371.16|EXO1|pc|chr1:241895003:241895148:+	0	+
#Deleted in new
chr12	41932121	41932592	ENSG00000257239.1|AC090630.1|lncRNA|chr12:41932121:41932592:-	0	-
#Partially deleted in new
chr1	241995489	241996385	ENSG00000197769.5|MAP1LC3C|pc|chr1:241995489:241996385:-	0	-
#Deleted in new
chr1	241998775	241998831	ENSG00000197769.5|MAP1LC3C|pc|chr1:241998775:241998831:-	0	-
#Deleted in new
chr1	241998950	241999073	ENSG00000197769.5|MAP1LC3C|pc|chr1:241998950:241999073:-	0	-
#Deleted in new
chr1	24200239	24200391	ENSG00000230023.2|AL590683.1|lncRNA|chr1:24200239:24200391:+	0	+
#Deleted in new
chr1	24210132	24211693	ENSG00000230023.2|AL590683.1|lncRNA|chr1:24210132:24211693:+	0	+
#Deleted in new
chr12	42172139	42172209	ENSG00000015153.14|YAF2|pc|chr12:42172139:42172209:-	0	-
#Deleted in new
chr1	242177728	242177903	ENSG00000272865.1|AL591686.2|lncRNA|chr1:242177728:242177903:+	0	+
#Deleted in new
chr12	42199135	42199235	ENSG00000015153.14|YAF2|pc|chr12:42199135:42199235:-	0	-
#Deleted in new
chr12	42199135	42199544	ENSG00000015153.14|YAF2|pc|chr12:42199135:42199544:-	0	-
#Deleted in new
chr1	242203554	242203743	ENSG00000224525.2|AL591686.1|lncRNA|chr1:242203554:242203743:+	0	+
#Deleted in new
chr1	242210368	242210827	ENSG00000224525.2|AL591686.1|lncRNA|chr1:242210368:242210827:+	0	+
#Duplicated in new
chr12	42312930	42313198	ENSG00000139168.7|ZCRB1|pc|chr12:42312930:42313198:-	0	-
#Deleted in new
chr12	42329822	42329936	ENSG00000134283.17|PPHLN1|pc|chr12:42329822:42329936:+	0	+
#Deleted in new
chr12	42331786	42331848	ENSG00000134283.17|PPHLN1|pc|chr12:42331786:42331848:+	0	+
#Deleted in new
chr12	42331797	42331848	ENSG00000134283.17|PPHLN1|pc|chr12:42331797:42331848:+	0	+
#Deleted in new
chr12	42332659	42332702	ENSG00000134283.17|PPHLN1|pc|chr12:42332659:42332702:+	0	+
#Deleted in new
chr12	42343803	42343904	ENSG00000134283.17|PPHLN1|pc|chr12:42343803:42343904:+	0	+
#Deleted in new
chr12	42350202	42350266	ENSG00000134283.17|PPHLN1|pc|chr12:42350202:42350266:+	0	+
#Deleted in new
chr12	42351369	42351471	ENSG00000134283.17|PPHLN1|pc|chr12:42351369:42351471:+	0	+
#Deleted in new
chr12	42361266	42361703	ENSG00000274943.1|AC079684.1|lncRNA|chr12:42361266:42361703:+	0	+
#Deleted in new
chr12	42374637	42374733	ENSG00000134283.17|PPHLN1|pc|chr12:42374637:42374733:+	0	+
#Partially deleted in new
chr12	42398853	42400485	ENSG00000134283.17|PPHLN1|pc|chr12:42398853:42400485:+	0	+
#Deleted in new
chr12	42442640	42442741	ENSG00000134283.17|PPHLN1|pc|chr12:42442640:42442741:+	0	+
#Partially deleted in new
chr12	42442648	42448623	ENSG00000134283.17|PPHLN1|pc|chr12:42442648:42448623:+	0	+
#Deleted in new
chr12	42445046	42445446	ENSG00000134283.17|PPHLN1|pc|chr12:42445046:42445446:+	0	+
#Deleted in new
chr12	42445972	42446290	ENSG00000134283.17|PPHLN1|pc|chr12:42445972:42446290:+	0	+
#Deleted in new
chr12	42445990	42446290	ENSG00000134283.17|PPHLN1|pc|chr12:42445990:42446290:+	0	+
#Deleted in new
chr12	42446065	42446290	ENSG00000134283.17|PPHLN1|pc|chr12:42446065:42446290:+	0	+
#Deleted in new
chr12	42446591	42446618	ENSG00000134283.17|PPHLN1|pc|chr12:42446591:42446618:+	0	+
#Deleted in new
chr12	42446591	42447165	ENSG00000134283.17|PPHLN1|pc|chr12:42446591:42447165:+	0	+
#Deleted in new
chr12	42446591	42447327	ENSG00000134283.17|PPHLN1|pc|chr12:42446591:42447327:+	0	+
#Deleted in new
chr12	42463621	42463717	ENSG00000139174.11|PRICKLE1|pc|chr12:42463621:42463717:-	0	-
#Deleted in new
chr12	42483375	42483672	ENSG00000139174.11|PRICKLE1|pc|chr12:42483375:42483672:-	0	-
#Deleted in new
chr12	42483757	42483985	ENSG00000139174.11|PRICKLE1|pc|chr12:42483757:42483985:-	0	-
#Deleted in new
chr12	42483757	42483993	ENSG00000139174.11|PRICKLE1|pc|chr12:42483757:42483993:-	0	-
#Deleted in new
chr12	42483757	42483995	ENSG00000139174.11|PRICKLE1|pc|chr12:42483757:42483995:-	0	-
#Deleted in new
chr12	42483812	42483985	ENSG00000139174.11|PRICKLE1|pc|chr12:42483812:42483985:-	0	-
#Deleted in new
chr12	4248764	4249193	ENSG00000256164.1|CCND2-AS1|lncRNA|chr12:4248764:4249193:-	0	-
#Deleted in new
chr12	42489722	42490019	ENSG00000258068.1|AC079600.3|lncRNA|chr12:42489722:42490019:-	0	-
#Deleted in new
chr12	42524754	42525046	ENSG00000139174.11|PRICKLE1|pc|chr12:42524754:42525046:-	0	-
#Deleted in new
chr12	42550207	42550329	ENSG00000139174.11|PRICKLE1|pc|chr12:42550207:42550329:-	0	-
#Deleted in new
chr12	42615502	42615962	ENSG00000257510.1|LINC02402|lncRNA|chr12:42615502:42615962:-	0	-
#Deleted in new
chr12	42634280	42634401	ENSG00000257510.1|LINC02402|lncRNA|chr12:42634280:42634401:-	0	-
#Deleted in new
chr12	42652459	42652583	ENSG00000257164.5|LINC02451|lncRNA|chr12:42652459:42652583:+	0	+
#Deleted in new
chr12	42681921	42682063	ENSG00000257164.5|LINC02451|lncRNA|chr12:42681921:42682063:+	0	+
#Deleted in new
chr12	42686611	42686701	ENSG00000257164.5|LINC02451|lncRNA|chr12:42686611:42686701:+	0	+
#Deleted in new
chr12	42692215	42692276	ENSG00000257114.2|LINC02450|lncRNA|chr12:42692215:42692276:+	0	+
#Deleted in new
chr12	42707777	42707986	ENSG00000257114.2|LINC02450|lncRNA|chr12:42707777:42707986:+	0	+
#Deleted in new
chr12	4285274	4285476	ENSG00000118971.7|CCND2|pc|chr12:4285274:4285476:+	0	+
#Deleted in new
chr12	4297756	4297968	ENSG00000118971.7|CCND2|pc|chr12:4297756:4297968:+	0	+
#Deleted in new
chr12	42996182	42996486	ENSG00000257373.1|AC012038.1|lncRNA|chr12:42996182:42996486:-	0	-
#Deleted in new
chr1	243007373	243007468	ENSG00000234116.1|AL606534.4|lncRNA|chr1:243007373:243007468:-	0	-
#Partially deleted in new
chr1	24307555	24307780	ENSG00000232298.2|AL138902.1|lncRNA|chr1:24307555:24307780:-	0	-
#Deleted in new
chr12	4307762	4308756	ENSG00000078237.6|TIGAR|pc|chr12:4307762:4308756:+	0	+
#Deleted in new
chr1	24310674	24310817	ENSG00000232298.2|AL138902.1|lncRNA|chr1:24310674:24310817:-	0	-
#Partially deleted in new
chr1	243135751	243136231	ENSG00000143702.15|CEP170|pc|chr1:243135751:243136231:-	0	-
#Deleted in new
chr1	243135897	243135955	ENSG00000227230.1|AL606534.1|lncRNA|chr1:243135897:243135955:+	0	+
#Deleted in new
chr12	43160878	43160968	ENSG00000258331.1|LINC02461|lncRNA|chr12:43160878:43160968:+	0	+
#Deleted in new
chr12	43162967	43163110	ENSG00000258331.1|LINC02461|lncRNA|chr12:43162967:43163110:+	0	+
#Deleted in new
chr1	243166526	243166572	ENSG00000143702.15|CEP170|pc|chr1:243166526:243166572:-	0	-
#Deleted in new
chr1	243168286	243168410	ENSG00000232085.1|AL606534.3|lncRNA|chr1:243168286:243168410:+	0	+
#Deleted in new
chr1	24323039	24323117	ENSG00000158055.15|GRHL3|pc|chr1:24323039:24323117:+	0	+
#Deleted in new
chr1	243293398	243293494	ENSG00000054282.15|SDCCAG8|pc|chr1:243293398:243293494:+	0	+
#Partially deleted in new
chr1	243304712	243305557	ENSG00000054282.15|SDCCAG8|pc|chr1:243304712:243305557:+	0	+
#Deleted in new
chr1	243305011	243305087	ENSG00000054282.15|SDCCAG8|pc|chr1:243305011:243305087:+	0	+
#Deleted in new
chr1	243305011	243306548	ENSG00000054282.15|SDCCAG8|pc|chr1:243305011:243306548:+	0	+
#Deleted in new
chr12	433406	433480	ENSG00000120647.9|CCDC77|pc|chr12:433406:433480:+	0	+
#Deleted in new
chr12	4335532	4335651	ENSG00000078237.6|TIGAR|pc|chr12:4335532:4335651:+	0	+
#Deleted in new
chr12	43423575	43423924	ENSG00000173157.16|ADAMTS20|pc|chr12:43423575:43423924:-	0	-
#Deleted in new
chr1	243487814	243487878	ENSG00000054282.15|SDCCAG8|pc|chr1:243487814:243487878:+	0	+
#Deleted in new
chr1	24364184	24364482	ENSG00000158055.15|GRHL3|pc|chr1:24364184:24364482:+	0	+
#Deleted in new
chr1	243687436	243687872	ENSG00000117020.16|AKT3|pc|chr1:243687436:243687872:-	0	-
#Deleted in new
chr1	243702856	243703045	ENSG00000232184.1|AL662889.1|lncRNA|chr1:243702856:243703045:-	0	-
#Split in new
chr12	43718992	43730702	ENSG00000129317.14|PUS7L|pc|chr12:43718992:43730702:-	0	-
#Deleted in new
chr1	243734957	243735116	ENSG00000117020.16|AKT3|pc|chr1:243734957:243735116:-	0	-
#Deleted in new
chr1	243735606	243735747	ENSG00000117020.16|AKT3|pc|chr1:243735606:243735747:-	0	-
#Deleted in new
chr1	243735663	243735747	ENSG00000117020.16|AKT3|pc|chr1:243735663:243735747:-	0	-
#Deleted in new
chr12	43758285	43758607	ENSG00000129317.14|PUS7L|pc|chr12:43758285:43758607:-	0	-
#Partially deleted in new
chr12	43758285	43758758	ENSG00000129317.14|PUS7L|pc|chr12:43758285:43758758:-	0	-
#Deleted in new
chr12	43760924	43760972	ENSG00000198001.13|IRAK4|pc|chr12:43760924:43760972:+	0	+
#Deleted in new
chr12	43763301	43763456	ENSG00000198001.13|IRAK4|pc|chr12:43763301:43763456:+	0	+
#Deleted in new
chr12	43771037	43771104	ENSG00000198001.13|IRAK4|pc|chr12:43771037:43771104:+	0	+
#Partially deleted in new
chr12	43786679	43789541	ENSG00000198001.13|IRAK4|pc|chr12:43786679:43789541:+	0	+
#Partially deleted in new
chr12	43786679	43789543	ENSG00000198001.13|IRAK4|pc|chr12:43786679:43789543:+	0	+
#Deleted in new
chr1	243788701	243788826	ENSG00000117020.16|AKT3|pc|chr1:243788701:243788826:-	0	-
#Deleted in new
chr1	243793204	243793580	ENSG00000228939.1|AKT3-IT1|lncRNA|chr1:243793204:243793580:-	0	-
#Partially deleted in new
chr1	243794259	243794400	ENSG00000228939.1|AKT3-IT1|lncRNA|chr1:243794259:243794400:-	0	-
#Deleted in new
chr1	243808122	243808234	ENSG00000117020.16|AKT3|pc|chr1:243808122:243808234:-	0	-
#Deleted in new
chr1	243814498	243814682	ENSG00000117020.16|AKT3|pc|chr1:243814498:243814682:-	0	-
#Deleted in new
chr1	243814498	243814730	ENSG00000117020.16|AKT3|pc|chr1:243814498:243814730:-	0	-
#Deleted in new
chr1	243818048	243818174	ENSG00000117020.16|AKT3|pc|chr1:243818048:243818174:-	0	-
#Partially deleted in new
chr1	243851048	243851079	ENSG00000117020.16|AKT3|pc|chr1:243851048:243851079:-	0	-
#Deleted in new
chr1	24391923	24392067	ENSG00000001460.17|STPG1|pc|chr1:24391923:24392067:-	0	-
#Deleted in new
chr1	24391923	24392071	ENSG00000001460.17|STPG1|pc|chr1:24391923:24392071:-	0	-
#Deleted in new
chr1	244003382	244003500	ENSG00000226828.1|AL591885.1|lncRNA|chr1:244003382:244003500:+	0	+
#Deleted in new
chr1	244005057	244005158	ENSG00000226828.1|AL591885.1|lncRNA|chr1:244005057:244005158:+	0	+
#Deleted in new
chr1	244010020	244010092	ENSG00000226828.1|AL591885.1|lncRNA|chr1:244010020:244010092:+	0	+
#Deleted in new
chr1	244024965	244025069	ENSG00000226828.1|AL591885.1|lncRNA|chr1:244024965:244025069:+	0	+
#Deleted in new
chr12	44073511	44073832	ENSG00000139173.9|TMEM117|pc|chr12:44073511:44073832:+	0	+
#Deleted in new
chr12	44073650	44073832	ENSG00000139173.9|TMEM117|pc|chr12:44073650:44073832:+	0	+
#Deleted in new
chr1	244075279	244075365	ENSG00000229960.1|AL590483.1|lncRNA|chr1:244075279:244075365:-	0	-
#Deleted in new
chr12	44083588	44083681	ENSG00000139173.9|TMEM117|pc|chr12:44083588:44083681:+	0	+
#Deleted in new
chr1	244091588	244091625	ENSG00000229960.1|AL590483.1|lncRNA|chr1:244091588:244091625:-	0	-
#Deleted in new
chr1	24410702	24410779	ENSG00000001460.17|STPG1|pc|chr1:24410702:24410779:-	0	-
#Deleted in new
chr1	24410702	24410817	ENSG00000001460.17|STPG1|pc|chr1:24410702:24410817:-	0	-
#Deleted in new
chr1	24411640	24412027	ENSG00000001460.17|STPG1|pc|chr1:24411640:24412027:-	0	-
#Deleted in new
chr12	44244393	44244450	ENSG00000257947.1|AC025030.2|lncRNA|chr12:44244393:44244450:-	0	-
#Deleted in new
chr12	44263472	44263982	ENSG00000257947.1|AC025030.2|lncRNA|chr12:44263472:44263982:-	0	-
#Deleted in new
chr12	44318294	44318371	ENSG00000139173.9|TMEM117|pc|chr12:44318294:44318371:+	0	+
#Deleted in new
chr1	24433103	24433213	ENSG00000001461.16|NIPAL3|pc|chr1:24433103:24433213:+	0	+
#Deleted in new
chr1	244376390	244376463	ENSG00000240963.1|AL645465.1|lncRNA|chr1:244376390:244376463:-	0	-
#Deleted in new
chr1	244454376	244454613	ENSG00000179397.17|CATSPERE|pc|chr1:244454376:244454613:+	0	+
#Deleted in new
chr1	244457492	244457569	ENSG00000179397.17|CATSPERE|pc|chr1:244457492:244457569:+	0	+
#Deleted in new
chr12	44498615	44499158	ENSG00000275286.1|AC025253.1|lncRNA|chr12:44498615:44499158:-	0	-
#Deleted in new
chr1	244515276	244515327	ENSG00000179397.17|CATSPERE|pc|chr1:244515276:244515327:+	0	+
#Deleted in new
chr1	24454053	24454824	ENSG00000001461.16|NIPAL3|pc|chr1:24454053:24454824:+	0	+
#Duplicated in new
chr1	244610239	244610588	ENSG00000179397.17|CATSPERE|pc|chr1:244610239:244610588:+	0	+
#Deleted in new
chr1	244636572	244636746	ENSG00000179397.17|CATSPERE|pc|chr1:244636572:244636746:+	0	+
#Deleted in new
chr1	244641004	244641177	ENSG00000179397.17|CATSPERE|pc|chr1:244641004:244641177:+	0	+
#Deleted in new
chr1	24466003	24466310	ENSG00000001461.16|NIPAL3|pc|chr1:24466003:24466310:+	0	+
#Partially deleted in new
chr1	244731023	244731586	ENSG00000282317.1|AL451007.2|lncRNA|chr1:244731023:244731586:+	0	+
#Deleted in new
chr1	244836484	244836520	ENSG00000203667.9|COX20|pc|chr1:244836484:244836520:+	0	+
#Partially deleted in new
chr1	244839746	244842058	ENSG00000203667.9|COX20|pc|chr1:244839746:244842058:+	0	+
#Partially deleted in new
chr1	244840637	244845344	ENSG00000153187.18|HNRNPU|pc|chr1:244840637:244845344:-	0	-
#Partially deleted in new
chr1	244843040	244843880	ENSG00000203667.9|COX20|pc|chr1:244843040:244843880:+	0	+
#Partially deleted in new
chr1	244843040	244845057	ENSG00000203667.9|COX20|pc|chr1:244843040:244845057:+	0	+
#Deleted in new
chr1	244843767	244845686	ENSG00000153187.18|HNRNPU|pc|chr1:244843767:244845686:-	0	-
#Deleted in new
chr1	244845199	244845344	ENSG00000153187.18|HNRNPU|pc|chr1:244845199:244845344:-	0	-
#Deleted in new
chr1	244845246	244845344	ENSG00000153187.18|HNRNPU|pc|chr1:244845246:244845344:-	0	-
#Deleted in new
chr1	244845251	244845344	ENSG00000153187.18|HNRNPU|pc|chr1:244845251:244845344:-	0	-
#Partially deleted in new
chr1	244863616	244863653	ENSG00000153187.18|HNRNPU|pc|chr1:244863616:244863653:-	0	-
#Deleted in new
chr12	44881778	44881839	ENSG00000184613.10|NELL2|pc|chr12:44881778:44881839:-	0	-
#Deleted in new
chr12	4502310	4502482	ENSG00000047621.11|C12orf4|pc|chr12:4502310:4502482:-	0	-
#Deleted in new
chr1	245075573	245075611	ENSG00000203666.12|EFCAB2|pc|chr1:245075573:245075611:+	0	+
#Deleted in new
chr12	4508877	4509350	ENSG00000047621.11|C12orf4|pc|chr12:4508877:4509350:-	0	-
#Deleted in new
chr1	245107178	245107297	ENSG00000203666.12|EFCAB2|pc|chr1:245107178:245107297:+	0	+
#Deleted in new
chr1	245121919	245121981	ENSG00000203666.12|EFCAB2|pc|chr1:245121919:245121981:+	0	+
#Deleted in new
chr1	245121919	245122521	ENSG00000203666.12|EFCAB2|pc|chr1:245121919:245122521:+	0	+
#Deleted in new
chr1	245121919	245122991	ENSG00000203666.12|EFCAB2|pc|chr1:245121919:245122991:+	0	+
#Partially deleted in new
chr1	245121919	245127164	ENSG00000203666.12|EFCAB2|pc|chr1:245121919:245127164:+	0	+
#Deleted in new
chr1	245214153	245214206	ENSG00000232192.1|AL592103.1|lncRNA|chr1:245214153:245214206:-	0	-
#Deleted in new
chr12	45228167	45228273	ENSG00000177119.15|ANO6|pc|chr12:45228167:45228273:+	0	+
#Deleted in new
chr1	245234386	245234501	ENSG00000232192.1|AL592103.1|lncRNA|chr1:245234386:245234501:-	0	-
#Deleted in new
chr12	45335548	45335628	ENSG00000177119.15|ANO6|pc|chr12:45335548:45335628:+	0	+
#Partially deleted in new
chr1	245353677	245353916	ENSG00000162849.15|KIF26B|pc|chr1:245353677:245353916:+	0	+
#Deleted in new
chr12	45383194	45383355	ENSG00000177119.15|ANO6|pc|chr12:45383194:45383355:+	0	+
#Deleted in new
chr12	45439674	45440404	ENSG00000177119.15|ANO6|pc|chr12:45439674:45440404:+	0	+
#Deleted in new
chr12	4545218	4545312	ENSG00000111247.14|RAD51AP1|pc|chr12:4545218:4545312:+	0	+
#Deleted in new
chr12	45481870	45482071	ENSG00000257657.2|AC079950.1|lncRNA|chr12:45481870:45482071:-	0	-
#Deleted in new
chr12	4550514	4550547	ENSG00000111247.14|RAD51AP1|pc|chr12:4550514:4550547:+	0	+
#Deleted in new
chr12	45519053	45519153	ENSG00000257657.2|AC079950.1|lncRNA|chr12:45519053:45519153:-	0	-
#Deleted in new
chr12	45610538	45610590	ENSG00000257657.2|AC079950.1|lncRNA|chr12:45610538:45610590:-	0	-
#Deleted in new
chr12	45610538	45610620	ENSG00000257657.2|AC079950.1|lncRNA|chr12:45610538:45610620:-	0	-
#Partially deleted in new
chr1	245676205	245676478	ENSG00000231612.1|AC104462.1|lncRNA|chr1:245676205:245676478:-	0	-
#Deleted in new
chr12	45755930	45756005	ENSG00000189079.15|ARID2|pc|chr12:45755930:45756005:+	0	+
#Deleted in new
chr12	45776080	45776329	ENSG00000189079.15|ARID2|pc|chr12:45776080:45776329:+	0	+
#Deleted in new
chr1	245788860	245788942	ENSG00000185420.18|SMYD3|pc|chr1:245788860:245788942:-	0	-
#Deleted in new
chr12	45789188	45789657	ENSG00000278475.1|AC009464.1|lncRNA|chr12:45789188:45789657:+	0	+
#Deleted in new
chr1	245814341	245814411	ENSG00000185420.18|SMYD3|pc|chr1:245814341:245814411:-	0	-
#Deleted in new
chr1	245814341	245814415	ENSG00000185420.18|SMYD3|pc|chr1:245814341:245814415:-	0	-
#Split in new
chr12	45839328	45842234	ENSG00000189079.15|ARID2|pc|chr12:45839328:45842234:+	0	+
#Deleted in new
chr12	45845989	45846072	ENSG00000189079.15|ARID2|pc|chr12:45845989:45846072:+	0	+
#Deleted in new
chr12	45904341	45904398	ENSG00000189079.15|ARID2|pc|chr12:45904341:45904398:+	0	+
#Deleted in new
chr12	4592517	4592705	ENSG00000010219.13|DYRK4|pc|chr12:4592517:4592705:+	0	+
#Deleted in new
chr12	45934975	45935083	ENSG00000139218.17|SCAF11|pc|chr12:45934975:45935083:-	0	-
#Deleted in new
chr1	245953230	245953355	ENSG00000185420.18|SMYD3|pc|chr1:245953230:245953355:-	0	-
#Deleted in new
chr1	245955832	245956102	ENSG00000185420.18|SMYD3|pc|chr1:245955832:245956102:-	0	-
#Deleted in new
chr12	45974189	45975734	ENSG00000139218.17|SCAF11|pc|chr12:45974189:45975734:-	0	-
#Deleted in new
chr1	245988393	245988538	ENSG00000185420.18|SMYD3|pc|chr1:245988393:245988538:-	0	-
#Deleted in new
chr1	245988393	245988562	ENSG00000185420.18|SMYD3|pc|chr1:245988393:245988562:-	0	-
#Deleted in new
chr1	246025896	246026055	ENSG00000235096.2|AC118555.1|lncRNA|chr1:246025896:246026055:+	0	+
#Deleted in new
chr1	246034482	246034634	ENSG00000235096.2|AC118555.1|lncRNA|chr1:246034482:246034634:+	0	+
#Deleted in new
chr1	246113688	246113866	ENSG00000226876.2|AC092801.1|lncRNA|chr1:246113688:246113866:+	0	+
#Deleted in new
chr1	246193674	246193727	ENSG00000185420.18|SMYD3|pc|chr1:246193674:246193727:-	0	-
#Partially deleted in new
chr12	46195724	46196276	ENSG00000111371.15|SLC38A1|pc|chr12:46195724:46196276:-	0	-
#Partially deleted in new
chr12	46196126	46196276	ENSG00000111371.15|SLC38A1|pc|chr12:46196126:46196276:-	0	-
#Deleted in new
chr12	46243199	46243314	ENSG00000111371.15|SLC38A1|pc|chr12:46243199:46243314:-	0	-
#Deleted in new
chr12	46254813	46254936	ENSG00000111371.15|SLC38A1|pc|chr12:46254813:46254936:-	0	-
#Deleted in new
chr12	4631321	4631382	ENSG00000272921.1|AC005832.4|pc|chr12:4631321:4631382:+	0	+
#Deleted in new
chr1	24631715	24631777	ENSG00000133226.16|SRRM1|pc|chr1:24631715:24631777:+	0	+
#Deleted in new
chr1	246321662	246321868	ENSG00000230184.1|SMYD3-IT1|lncRNA|chr1:246321662:246321868:-	0	-
#Deleted in new
chr1	246322283	246322438	ENSG00000230184.1|SMYD3-IT1|lncRNA|chr1:246322283:246322438:-	0	-
#Deleted in new
chr1	24633018	24633099	ENSG00000133226.16|SRRM1|pc|chr1:24633018:24633099:+	0	+
#Deleted in new
chr1	24633065	24633099	ENSG00000133226.16|SRRM1|pc|chr1:24633065:24633099:+	0	+
#Deleted in new
chr1	24635643	24635877	ENSG00000133226.16|SRRM1|pc|chr1:24635643:24635877:+	0	+
#Partially deleted in new
chr12	46372320	46372446	ENSG00000134294.13|SLC38A2|pc|chr12:46372320:46372446:-	0	-
#Deleted in new
chr12	46383678	46383713	ENSG00000257261.5|AC008014.1|lncRNA|chr12:46383678:46383713:+	0	+
#Deleted in new
chr1	24641230	24641392	ENSG00000133226.16|SRRM1|pc|chr1:24641230:24641392:+	0	+
#Deleted in new
chr1	246417295	246417409	ENSG00000185420.18|SMYD3|pc|chr1:246417295:246417409:-	0	-
#Partially deleted in new
chr12	4645495	4645875	ENSG00000256381.1|AC005832.1|lncRNA|chr12:4645495:4645875:+	0	+
#Partially deleted in new
chr12	46455011	46455141	ENSG00000257261.5|AC008014.1|lncRNA|chr12:46455011:46455141:+	0	+
#Deleted in new
chr1	246516038	246516830	ENSG00000242042.1|LINC01743|lncRNA|chr1:246516038:246516830:-	0	-
#Deleted in new
chr1	246517698	246517779	ENSG00000242042.1|LINC01743|lncRNA|chr1:246517698:246517779:-	0	-
#Deleted in new
chr1	246524196	246524287	ENSG00000242042.1|LINC01743|lncRNA|chr1:246524196:246524287:-	0	-
#Deleted in new
chr12	4653500	4653678	ENSG00000139180.10|NDUFA9|pc|chr12:4653500:4653678:+	0	+
#Deleted in new
chr12	4655732	4655950	ENSG00000139180.10|NDUFA9|pc|chr12:4655732:4655950:+	0	+
#Deleted in new
chr1	246605872	246607340	ENSG00000225300.1|AL591623.1|lncRNA|chr1:246605872:246607340:+	0	+
#Deleted in new
chr1	246607610	246608102	ENSG00000225300.1|AL591623.1|lncRNA|chr1:246607610:246608102:+	0	+
#Deleted in new
chr12	4667536	4667654	ENSG00000139180.10|NDUFA9|pc|chr12:4667536:4667654:+	0	+
#Partially deleted in new
chr1	246682107	246685075	ENSG00000260698.1|AL591848.3|lncRNA|chr1:246682107:246685075:+	0	+
#Deleted in new
chr1	246690046	246690214	ENSG00000235021.1|AL591848.2|lncRNA|chr1:246690046:246690214:+	0	+
#Partially deleted in new
chr1	246772300	246775772	ENSG00000260855.1|AL591848.4|lncRNA|chr1:246772300:246775772:+	0	+
#Partially deleted in new
chr1	246781478	246781554	ENSG00000227953.6|LINC01341|lncRNA|chr1:246781478:246781554:+	0	+
#Partially deleted in new
chr1	246789507	246789600	ENSG00000227953.6|LINC01341|lncRNA|chr1:246789507:246789600:+	0	+
#Deleted in new
chr12	46824305	46824385	ENSG00000139209.15|SLC38A4|pc|chr12:46824305:46824385:-	0	-
#Deleted in new
chr1	246865254	246865333	ENSG00000153207.14|AHCTF1|pc|chr1:246865254:246865333:-	0	-
#Partially deleted in new
chr12	4686937	4694317	ENSG00000139180.10|NDUFA9|pc|chr12:4686937:4694317:+	0	+
#Deleted in new
chr1	246945546	246945827	ENSG00000135747.11|ZNF670-ZNF695|pc|chr1:246945546:246945827:-	0	-
#Deleted in new
chr1	246945546	246945827	ENSG00000197472.14|ZNF695|pc|chr1:246945546:246945827:-	0	-
#Deleted in new
chr1	246945548	246945827	ENSG00000197472.14|ZNF695|pc|chr1:246945548:246945827:-	0	-
#Deleted in new
chr1	246945618	246945827	ENSG00000197472.14|ZNF695|pc|chr1:246945618:246945827:-	0	-
#Deleted in new
chr1	246945674	246945827	ENSG00000197472.14|ZNF695|pc|chr1:246945674:246945827:-	0	-
#Deleted in new
chr1	246945677	246945827	ENSG00000197472.14|ZNF695|pc|chr1:246945677:246945827:-	0	-
#Deleted in new
chr1	246967661	246969678	ENSG00000135747.11|ZNF670-ZNF695|pc|chr1:246967661:246969678:-	0	-
#Deleted in new
chr1	246967694	246967792	ENSG00000135747.11|ZNF670-ZNF695|pc|chr1:246967694:246967792:-	0	-
#Deleted in new
chr1	246967694	246967792	ENSG00000197472.14|ZNF695|pc|chr1:246967694:246967792:-	0	-
#Deleted in new
chr12	46970503	46971159	ENSG00000274723.1|AC079906.1|lncRNA|chr12:46970503:46971159:+	0	+
#Deleted in new
chr12	46971996	46972155	ENSG00000274723.1|AC079906.1|lncRNA|chr12:46971996:46972155:+	0	+
#Deleted in new
chr1	246979839	246980004	ENSG00000135747.11|ZNF670-ZNF695|pc|chr1:246979839:246980004:-	0	-
#Deleted in new
chr1	246996020	246996181	ENSG00000135747.11|ZNF670-ZNF695|pc|chr1:246996020:246996181:-	0	-
#Deleted in new
chr12	4700416	4701179	ENSG00000255474.1|AC005833.2|lncRNA|chr12:4700416:4701179:-	0	-
#Deleted in new
chr12	4703312	4703440	ENSG00000255474.1|AC005833.2|lncRNA|chr12:4703312:4703440:-	0	-
#Deleted in new
chr12	4704177	4704297	ENSG00000255474.1|AC005833.2|lncRNA|chr12:4704177:4704297:-	0	-
#Deleted in new
chr1	24705069	24705146	ENSG00000284699.1|AL445648.1|lncRNA|chr1:24705069:24705146:+	0	+
#Deleted in new
chr1	247110159	247112417	ENSG00000221953.5|C1orf229|lncRNA|chr1:247110159:247112417:-	0	-
#Deleted in new
chr1	247121974	247123871	ENSG00000196418.12|ZNF124|pc|chr1:247121974:247123871:-	0	-
#Deleted in new
chr1	247123502	247123871	ENSG00000196418.12|ZNF124|pc|chr1:247123502:247123871:-	0	-
#Deleted in new
chr1	247138144	247138757	ENSG00000196418.12|ZNF124|pc|chr1:247138144:247138757:-	0	-
#Deleted in new
chr1	247138715	247138757	ENSG00000196418.12|ZNF124|pc|chr1:247138715:247138757:-	0	-
#Deleted in new
chr1	247149857	247149950	ENSG00000196418.12|ZNF124|pc|chr1:247149857:247149950:-	0	-
#Deleted in new
chr1	24717234	24717596	ENSG00000284699.1|AL445648.1|lncRNA|chr1:24717234:24717596:+	0	+
#Deleted in new
chr1	247187280	247188526	ENSG00000259865.1|AL390728.6|lncRNA|chr1:247187280:247188526:-	0	-
#Deleted in new
chr12	4719864	4720102	ENSG00000255474.1|AC005833.2|lncRNA|chr12:4719864:4720102:-	0	-
#Deleted in new
chr12	4720340	4720888	ENSG00000130035.6|GALNT8|pc|chr12:4720340:4720888:+	0	+
#Deleted in new
chr12	47205897	47206069	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47205897:47206069:-	0	-
#Deleted in new
chr12	47205897	47206145	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47205897:47206145:-	0	-
#Deleted in new
chr12	47205898	47206069	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47205898:47206069:-	0	-
#Deleted in new
chr12	47205900	47206069	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47205900:47206069:-	0	-
#Deleted in new
chr12	47205900	47206145	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47205900:47206145:-	0	-
#Deleted in new
chr12	47205901	47206145	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47205901:47206145:-	0	-
#Deleted in new
chr12	47205940	47206145	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47205940:47206145:-	0	-
#Deleted in new
chr12	47206378	47206588	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47206378:47206588:-	0	-
#Deleted in new
chr12	47206510	47206585	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47206510:47206585:-	0	-
#Deleted in new
chr12	47206510	47206588	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47206510:47206588:-	0	-
#Deleted in new
chr12	47208419	47210761	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47208419:47210761:-	0	-
#Deleted in new
chr12	47209280	47209374	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47209280:47209374:-	0	-
#Deleted in new
chr12	47209280	47209458	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47209280:47209458:-	0	-
#Deleted in new
chr12	47209280	47209482	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47209280:47209482:-	0	-
#Deleted in new
chr12	47210639	47210737	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47210639:47210737:-	0	-
#Deleted in new
chr12	47210639	47210757	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47210639:47210757:-	0	-
#Deleted in new
chr12	47210639	47210761	ENSG00000247774.6|PCED1B-AS1|lncRNA|chr12:47210639:47210761:-	0	-
#Deleted in new
chr1	247211526	247211664	ENSG00000232347.1|AL390728.5|lncRNA|chr1:247211526:247211664:-	0	-
#Deleted in new
chr1	247212174	247212392	ENSG00000232347.1|AL390728.5|lncRNA|chr1:247212174:247212392:-	0	-
#Deleted in new
chr1	247241776	247241823	ENSG00000232347.1|AL390728.5|lncRNA|chr1:247241776:247241823:-	0	-
#Deleted in new
chr12	47248123	47248301	ENSG00000258181.1|AC008083.3|lncRNA|chr12:47248123:47248301:+	0	+
#Deleted in new
chr12	47249134	47249285	ENSG00000258181.1|AC008083.3|lncRNA|chr12:47249134:47249285:+	0	+
#Deleted in new
chr12	47249135	47249231	ENSG00000258181.1|AC008083.3|lncRNA|chr12:47249135:47249231:+	0	+
#Deleted in new
chr12	47249325	47249428	ENSG00000258181.1|AC008083.3|lncRNA|chr12:47249325:47249428:+	0	+
#Deleted in new
chr12	47265664	47266108	ENSG00000276454.1|AC008083.4|lncRNA|chr12:47265664:47266108:+	0	+
#Deleted in new
chr12	47278915	47279021	ENSG00000257925.1|AC008083.1|lncRNA|chr12:47278915:47279021:-	0	-
#Partially deleted in new
chr1	247322697	247322805	ENSG00000162714.12|ZNF496|pc|chr1:247322697:247322805:-	0	-
#Deleted in new
chr12	47353753	47353882	ENSG00000257924.1|LINC02416|lncRNA|chr12:47353753:47353882:+	0	+
#Deleted in new
chr12	47367291	47367424	ENSG00000257924.1|LINC02416|lncRNA|chr12:47367291:47367424:+	0	+
#Deleted in new
chr12	47369657	47369935	ENSG00000257924.1|LINC02416|lncRNA|chr12:47369657:47369935:+	0	+
#Deleted in new
chr12	47419921	47420179	ENSG00000257906.1|LINC02156|lncRNA|chr12:47419921:47420179:+	0	+
#Deleted in new
chr1	247519174	247519407	ENSG00000169224.12|GCSAML|pc|chr1:247519174:247519407:+	0	+
#Split in new
chr1	247524676	247532540	ENSG00000196242.8|OR2C3|pc|chr1:247524676:247532540:-	0	-
#Deleted in new
chr1	247524678	247525933	ENSG00000196242.8|OR2C3|pc|chr1:247524678:247525933:-	0	-
#Deleted in new
chr1	247526369	247526752	ENSG00000196242.8|OR2C3|pc|chr1:247526369:247526752:-	0	-
#Deleted in new
chr1	247526939	247527054	ENSG00000169224.12|GCSAML|pc|chr1:247526939:247527054:+	0	+
#Deleted in new
chr1	247533506	247533836	ENSG00000196242.8|OR2C3|pc|chr1:247533506:247533836:-	0	-
#Deleted in new
chr1	247533506	247533878	ENSG00000196242.8|OR2C3|pc|chr1:247533506:247533878:-	0	-
#Deleted in new
chr1	247536167	247536440	ENSG00000196242.8|OR2C3|pc|chr1:247536167:247536440:-	0	-
#Deleted in new
chr1	247538675	247538791	ENSG00000169224.12|GCSAML|pc|chr1:247538675:247538791:+	0	+
#Deleted in new
chr1	247549044	247549119	ENSG00000169224.12|GCSAML|pc|chr1:247549044:247549119:+	0	+
#Deleted in new
chr1	247549044	247549220	ENSG00000169224.12|GCSAML|pc|chr1:247549044:247549220:+	0	+
#Deleted in new
chr1	247549087	247549220	ENSG00000169224.12|GCSAML|pc|chr1:247549087:247549220:+	0	+
#Deleted in new
chr1	247549135	247549220	ENSG00000169224.12|GCSAML|pc|chr1:247549135:247549220:+	0	+
#Deleted in new
chr1	247556406	247556466	ENSG00000169224.12|GCSAML|pc|chr1:247556406:247556466:+	0	+
#Deleted in new
chr1	247563589	247563639	ENSG00000169224.12|GCSAML|pc|chr1:247563589:247563639:+	0	+
#Deleted in new
chr1	247565638	247565951	ENSG00000236817.5|AL606804.1|lncRNA|chr1:247565638:247565951:-	0	-
#Deleted in new
chr1	247565907	247565951	ENSG00000236817.5|AL606804.1|lncRNA|chr1:247565907:247565951:-	0	-
#Deleted in new
chr1	247565930	247565959	ENSG00000169224.12|GCSAML|pc|chr1:247565930:247565959:+	0	+
#Deleted in new
chr1	247574142	247574215	ENSG00000169224.12|GCSAML|pc|chr1:247574142:247574215:+	0	+
#Deleted in new
chr1	247574142	247574293	ENSG00000169224.12|GCSAML|pc|chr1:247574142:247574293:+	0	+
#Deleted in new
chr1	247574142	247574881	ENSG00000169224.12|GCSAML|pc|chr1:247574142:247574881:+	0	+
#Deleted in new
chr1	247574142	247575020	ENSG00000169224.12|GCSAML|pc|chr1:247574142:247575020:+	0	+
#Deleted in new
chr1	247574142	247575648	ENSG00000169224.12|GCSAML|pc|chr1:247574142:247575648:+	0	+
#Deleted in new
chr1	247574142	247577667	ENSG00000169224.12|GCSAML|pc|chr1:247574142:247577667:+	0	+
#Deleted in new
chr1	247574142	247577688	ENSG00000169224.12|GCSAML|pc|chr1:247574142:247577688:+	0	+
#Deleted in new
chr1	247574142	247577690	ENSG00000169224.12|GCSAML|pc|chr1:247574142:247577690:+	0	+
#Deleted in new
chr12	4765378	4765546	ENSG00000130035.6|GALNT8|pc|chr12:4765378:4765546:+	0	+
#Partially deleted in new
chr12	47661248	47663590	ENSG00000005175.9|RPAP3|pc|chr12:47661248:47663590:-	0	-
#Deleted in new
chr1	247663502	247663843	ENSG00000235749.2|AL390860.1|lncRNA|chr1:247663502:247663843:+	0	+
#Deleted in new
chr12	47664589	47664843	ENSG00000005175.9|RPAP3|pc|chr12:47664589:47664843:-	0	-
#Deleted in new
chr12	4768441	4768476	ENSG00000130035.6|GALNT8|pc|chr12:4768441:4768476:+	0	+
#Deleted in new
chr12	47699400	47699917	ENSG00000276390.1|AC004241.3|lncRNA|chr12:47699400:47699917:-	0	-
#Deleted in new
chr12	47700014	47700164	ENSG00000005175.9|RPAP3|pc|chr12:47700014:47700164:-	0	-
#Deleted in new
chr1	247713890	247713954	ENSG00000169214.4|OR6F1|pc|chr1:247713890:247713954:-	0	-
#Deleted in new
chr1	247713890	247713954	ENSG00000239395.2|AC118470.1|pc|chr1:247713890:247713954:-	0	-
#Deleted in new
chr12	47719599	47719699	ENSG00000257433.5|AC004241.1|lncRNA|chr12:47719599:47719699:+	0	+
#Deleted in new
chr12	47719600	47719699	ENSG00000257433.5|AC004241.1|lncRNA|chr12:47719600:47719699:+	0	+
#Deleted in new
chr12	47719604	47719699	ENSG00000257433.5|AC004241.1|lncRNA|chr12:47719604:47719699:+	0	+
#Deleted in new
chr12	47719901	47720116	ENSG00000257433.5|AC004241.1|lncRNA|chr12:47719901:47720116:+	0	+
#Deleted in new
chr1	247746202	247747062	ENSG00000235749.2|AL390860.1|lncRNA|chr1:247746202:247747062:+	0	+
#Split in new
chr1	247754845	247758419	ENSG00000221888.4|OR1C1|pc|chr1:247754845:247758419:-	0	-
#Deleted in new
chr1	247760411	247760556	ENSG00000221888.4|OR1C1|pc|chr1:247760411:247760556:-	0	-
#Deleted in new
chr12	47772169	47772320	ENSG00000211584.13|SLC48A1|pc|chr12:47772169:47772320:+	0	+
#Partially deleted in new
chr12	47791870	47792669	ENSG00000061273.17|HDAC7|pc|chr12:47791870:47792669:-	0	-
#Deleted in new
chr12	47792537	47792669	ENSG00000061273.17|HDAC7|pc|chr12:47792537:47792669:-	0	-
#Deleted in new
chr1	247819062	247819177	ENSG00000196772.4|OR14A16|pc|chr1:247819062:247819177:-	0	-
#Deleted in new
chr1	247823952	247824119	ENSG00000196772.4|OR14A16|pc|chr1:247823952:247824119:-	0	-
#Deleted in new
chr1	247924888	247925168	ENSG00000177275.4|OR2AJ1|pc|chr1:247924888:247925168:+	0	+
#Deleted in new
chr1	24793176	24793213	ENSG00000169504.14|CLIC4|pc|chr1:24793176:24793213:+	0	+
#Partially deleted in new
chr12	47960496	47963469	ENSG00000279840.1|AC004801.7|lncRNA|chr12:47960496:47963469:-	0	-
#Deleted in new
chr12	48007980	48008061	ENSG00000258203.5|AC004801.5|lncRNA|chr12:48007980:48008061:-	0	-
#Deleted in new
chr1	248013659	248013738	ENSG00000197454.2|OR2L5|pc|chr1:248013659:248013738:+	0	+
#Deleted in new
chr12	48014053	48014190	ENSG00000257985.1|AC004801.4|lncRNA|chr12:48014053:48014190:+	0	+
#Deleted in new
chr12	48019770	48020169	ENSG00000257955.1|AC004801.3|lncRNA|chr12:48019770:48020169:-	0	-
#Deleted in new
chr1	248030069	248030235	ENSG00000203663.4|OR2L2|pc|chr1:248030069:248030235:+	0	+
#Deleted in new
chr1	248035549	248035624	ENSG00000203663.4|OR2L2|pc|chr1:248035549:248035624:+	0	+
#Partially deleted in new
chr1	248038246	248042305	ENSG00000203663.4|OR2L2|pc|chr1:248038246:248042305:+	0	+
#Deleted in new
chr1	248046835	248046880	ENSG00000198128.4|OR2L3|pc|chr1:248046835:248046880:+	0	+
#Deleted in new
chr1	248051187	248051241	ENSG00000198128.4|OR2L3|pc|chr1:248051187:248051241:+	0	+
#Deleted in new
chr1	248055833	248055916	ENSG00000198128.4|OR2L3|pc|chr1:248055833:248055916:+	0	+
#Deleted in new
chr12	48099061	48099154	ENSG00000079387.13|SENP1|pc|chr12:48099061:48099154:-	0	-
#Deleted in new
chr12	48125324	48125562	ENSG00000152556.15|PFKM|pc|chr12:48125324:48125562:+	0	+
#Partially deleted in new
chr12	48152816	48153128	ENSG00000274124.1|AC074029.3|lncRNA|chr12:48152816:48153128:+	0	+
#Deleted in new
chr1	248174820	248174871	ENSG00000198601.3|OR2M2|pc|chr1:248174820:248174871:+	0	+
#Deleted in new
chr1	248177917	248177995	ENSG00000198601.3|OR2M2|pc|chr1:248177917:248177995:+	0	+
#Deleted in new
chr1	248197264	248197301	ENSG00000228198.3|OR2M3|pc|chr1:248197264:248197301:+	0	+
#Deleted in new
chr12	48231097	48231186	ENSG00000258234.1|AC024257.1|lncRNA|chr12:48231097:48231186:-	0	-
#Deleted in new
chr1	248231416	248231580	ENSG00000171180.2|OR2M4|pc|chr1:248231416:248231580:+	0	+
#Deleted in new
chr12	48233568	48233776	ENSG00000258234.1|AC024257.1|lncRNA|chr12:48233568:48233776:-	0	-
#Split in new
chr1	248238909	248244679	ENSG00000171180.2|OR2M4|pc|chr1:248238909:248244679:+	0	+
#Split in new
chr1	248269916	248273822	ENSG00000177212.4|OR2T33|pc|chr1:248269916:248273822:-	0	-
#Deleted in new
chr1	248277764	248277976	ENSG00000177212.4|OR2T33|pc|chr1:248277764:248277976:-	0	-
#Deleted in new
chr12	48278426	48278634	ENSG00000258234.1|AC024257.1|lncRNA|chr12:48278426:48278634:-	0	-
#Deleted in new
chr12	48284149	48284210	ENSG00000258234.1|AC024257.1|lncRNA|chr12:48284149:48284210:-	0	-
#Split in new
chr1	248290138	248295586	ENSG00000177201.2|OR2T12|pc|chr1:248290138:248295586:-	0	-
#Deleted in new
chr1	248301372	248301553	ENSG00000177201.2|OR2T12|pc|chr1:248301372:248301553:-	0	-
#Deleted in new
chr1	248303345	248303424	ENSG00000177201.2|OR2T12|pc|chr1:248303345:248303424:-	0	-
#Deleted in new
chr12	48327941	48328472	ENSG00000275228.1|AC024257.5|lncRNA|chr12:48327941:48328472:-	0	-
#Deleted in new
chr12	48351207	48351238	ENSG00000167528.12|ZNF641|pc|chr12:48351207:48351238:-	0	-
#Partially deleted in new
chr12	48351207	48351414	ENSG00000167528.12|ZNF641|pc|chr12:48351207:48351414:-	0	-
#Deleted in new
chr12	48357452	48357592	ENSG00000257735.1|AC090115.1|lncRNA|chr12:48357452:48357592:+	0	+
#Deleted in new
chr12	48360919	48361377	ENSG00000273765.1|AC024257.4|lncRNA|chr12:48360919:48361377:+	0	+
#Deleted in new
chr1	248384710	248384864	ENSG00000198104.3|OR2T6|pc|chr1:248384710:248384864:+	0	+
#Deleted in new
chr12	4838954	4839361	ENSG00000255608.1|AC006063.1|lncRNA|chr12:4838954:4839361:+	0	+
#Deleted in new
chr12	4842522	4842675	ENSG00000255608.1|AC006063.1|lncRNA|chr12:4842522:4842675:+	0	+
#Deleted in new
chr1	248445511	248445669	ENSG00000196240.4|OR2T2|pc|chr1:248445511:248445669:+	0	+
#Deleted in new
chr1	248446588	248446811	ENSG00000196240.4|OR2T2|pc|chr1:248446588:248446811:+	0	+
#Deleted in new
chr1	248449193	248449392	ENSG00000196240.4|OR2T2|pc|chr1:248449193:248449392:+	0	+
#Deleted in new
chr1	248484244	248484895	ENSG00000229255.1|AC138089.1|lncRNA|chr1:248484244:248484895:-	0	-
#Deleted in new
chr12	48500821	48500961	ENSG00000258121.1|AC089987.3|lncRNA|chr12:48500821:48500961:-	0	-
#Deleted in new
chr1	248508072	248508429	ENSG00000188558.6|OR2G6|pc|chr1:248508072:248508429:+	0	+
#Deleted in new
chr1	248509535	248509648	ENSG00000188558.6|OR2G6|pc|chr1:248509535:248509648:+	0	+
#Partially deleted in new
chr1	248521610	248527337	ENSG00000188558.6|OR2G6|pc|chr1:248521610:248527337:+	0	+
#Deleted in new
chr12	48527911	48528103	ENSG00000284723.1|OR8S1|pc|chr12:48527911:48528103:+	0	+
#Deleted in new
chr1	248548755	248548846	ENSG00000224521.1|AC098483.1|lncRNA|chr1:248548755:248548846:+	0	+
#Deleted in new
chr1	248563188	248563839	ENSG00000224521.1|AC098483.1|lncRNA|chr1:248563188:248563839:+	0	+
#Partially deleted in new
chr1	248590486	248593796	ENSG00000184022.4|OR2T10|pc|chr1:248590486:248593796:-	0	-
#Deleted in new
chr1	248597491	248597700	ENSG00000184022.4|OR2T10|pc|chr1:248597491:248597700:-	0	-
#Deleted in new
chr1	248651423	248651572	ENSG00000187701.4|OR2T27|pc|chr1:248651423:248651572:-	0	-
#Deleted in new
chr1	248655443	248655528	ENSG00000187701.4|OR2T27|pc|chr1:248655443:248655528:-	0	-
#Deleted in new
chr12	48658631	48658674	ENSG00000139620.12|KANSL2|pc|chr12:48658631:48658674:-	0	-
#Deleted in new
chr12	48661194	48661243	ENSG00000139620.12|KANSL2|pc|chr12:48661194:48661243:-	0	-
#Deleted in new
chr12	48662559	48662592	ENSG00000139620.12|KANSL2|pc|chr12:48662559:48662592:-	0	-
#Deleted in new
chr12	48662559	48662654	ENSG00000139620.12|KANSL2|pc|chr12:48662559:48662654:-	0	-
#Partially deleted in new
chr12	48697952	48697962	ENSG00000129315.10|CCNT1|pc|chr12:48697952:48697962:-	0	-
#Deleted in new
chr1	248718648	248718807	ENSG00000259823.5|LYPD8|pc|chr1:248718648:248718807:-	0	-
#Deleted in new
chr12	48736087	48736172	ENSG00000257987.5|TEX49|pc|chr12:48736087:48736172:+	0	+
#Partially deleted in new
chr1	248816029	248816662	ENSG00000175137.10|SH3BP5L|pc|chr1:248816029:248816662:-	0	-
#Deleted in new
chr1	248820402	248820912	ENSG00000175137.10|SH3BP5L|pc|chr1:248820402:248820912:-	0	-
#Deleted in new
chr12	48835119	48835214	ENSG00000174243.9|DDX23|pc|chr12:48835119:48835214:-	0	-
#Deleted in new
chr1	248838209	248838370	ENSG00000171161.12|ZNF672|pc|chr1:248838209:248838370:+	0	+
#Deleted in new
chr1	248838279	248838551	ENSG00000171161.12|ZNF672|pc|chr1:248838279:248838551:+	0	+
#Deleted in new
chr1	248838330	248838551	ENSG00000171161.12|ZNF672|pc|chr1:248838330:248838551:+	0	+
#Deleted in new
chr1	248838827	248839074	ENSG00000171161.12|ZNF672|pc|chr1:248838827:248839074:+	0	+
#Deleted in new
chr1	248839005	248839144	ENSG00000171161.12|ZNF672|pc|chr1:248839005:248839144:+	0	+
#Deleted in new
chr1	248839089	248839230	ENSG00000171161.12|ZNF672|pc|chr1:248839089:248839230:+	0	+
#Deleted in new
chr1	248839153	248839451	ENSG00000171161.12|ZNF672|pc|chr1:248839153:248839451:+	0	+
#Deleted in new
chr12	48839486	48839551	ENSG00000174243.9|DDX23|pc|chr12:48839486:48839551:-	0	-
#Deleted in new
chr12	48840128	48840151	ENSG00000174243.9|DDX23|pc|chr12:48840128:48840151:-	0	-
#Deleted in new
chr1	248845565	248845662	ENSG00000171161.12|ZNF672|pc|chr1:248845565:248845662:+	0	+
#Deleted in new
chr12	48847255	48847347	ENSG00000174243.9|DDX23|pc|chr12:48847255:48847347:-	0	-
#Deleted in new
chr12	48847255	48847350	ENSG00000174243.9|DDX23|pc|chr12:48847255:48847350:-	0	-
#Partially deleted in new
chr1	248857651	248857845	ENSG00000171163.15|ZNF692|pc|chr1:248857651:248857845:-	0	-
#Deleted in new
chr1	248857738	248857772	ENSG00000171163.15|ZNF692|pc|chr1:248857738:248857772:-	0	-
#Deleted in new
chr1	248862628	248862787	ENSG00000227237.1|AL672291.1|lncRNA|chr1:248862628:248862787:+	0	+
#Deleted in new
chr1	248864576	248864796	ENSG00000227237.1|AL672291.1|lncRNA|chr1:248864576:248864796:+	0	+
#Partially deleted in new
chr1	248906195	248906342	ENSG00000185220.11|PGBD2|pc|chr1:248906195:248906342:+	0	+
#Partially deleted in new
chr1	248906242	248906342	ENSG00000185220.11|PGBD2|pc|chr1:248906242:248906342:+	0	+
#Partially deleted in new
chr12	48922564	48923145	ENSG00000134285.10|FKBP11|pc|chr12:48922564:48923145:-	0	-
#Partially deleted in new
chr12	48923125	48923604	ENSG00000134285.10|FKBP11|pc|chr12:48923125:48923604:-	0	-
#Deleted in new
chr12	48931412	48931840	ENSG00000139537.10|CCDC65|pc|chr12:48931412:48931840:+	0	+
#Deleted in new
chr12	48955694	48955760	ENSG00000134287.9|ARF3|pc|chr12:48955694:48955760:-	0	-
#Deleted in new
chr12	49008425	49008599	ENSG00000181929.11|PRKAG1|pc|chr12:49008425:49008599:-	0	-
#Deleted in new
chr12	49009308	49009389	ENSG00000257913.2|DDN-AS1|lncRNA|chr12:49009308:49009389:+	0	+
#Deleted in new
chr12	49009314	49009389	ENSG00000257913.2|DDN-AS1|lncRNA|chr12:49009314:49009389:+	0	+
#Partially deleted in new
chr12	49012612	49013110	ENSG00000181929.11|PRKAG1|pc|chr12:49012612:49013110:-	0	-
#Deleted in new
chr12	49017156	49017550	ENSG00000181929.11|PRKAG1|pc|chr12:49017156:49017550:-	0	-
#Deleted in new
chr12	49035574	49036017	ENSG00000167548.14|KMT2D|pc|chr12:49035574:49036017:-	0	-
#Partially deleted in new
chr12	49100758	49101213	ENSG00000139636.15|LMBR1L|pc|chr12:49100758:49101213:-	0	-
#Deleted in new
chr12	49147662	49147865	ENSG00000258017.1|AC011603.2|lncRNA|chr12:49147662:49147865:+	0	+
#Deleted in new
chr12	49147662	49147869	ENSG00000258017.1|AC011603.2|lncRNA|chr12:49147662:49147869:+	0	+
#Deleted in new
chr12	49208545	49208949	ENSG00000167553.15|TUBA1C|pc|chr12:49208545:49208949:+	0	+
#Deleted in new
chr12	49208831	49208901	ENSG00000167553.15|TUBA1C|pc|chr12:49208831:49208901:+	0	+
#Deleted in new
chr12	49257883	49258001	ENSG00000167553.15|TUBA1C|pc|chr12:49257883:49258001:+	0	+
#Partially deleted in new
chr12	49264652	49264756	ENSG00000258101.2|AC010173.1|lncRNA|chr12:49264652:49264756:-	0	-
#Deleted in new
chr12	49303099	49303230	ENSG00000258334.1|AC125611.4|lncRNA|chr12:49303099:49303230:-	0	-
#Deleted in new
chr12	49303805	49303892	ENSG00000258334.1|AC125611.4|lncRNA|chr12:49303805:49303892:-	0	-
#Partially deleted in new
chr1	2493100	2493258	ENSG00000224387.1|AL139246.1|lncRNA|chr1:2493100:2493258:-	0	-
#Deleted in new
chr12	49324491	49324576	ENSG00000258334.1|AC125611.4|lncRNA|chr12:49324491:49324576:-	0	-
#Deleted in new
chr12	49353978	49354142	ENSG00000178401.14|DNAJC22|pc|chr12:49353978:49354142:+	0	+
#Deleted in new
chr12	49357148	49357546	ENSG00000178401.14|DNAJC22|pc|chr12:49357148:49357546:+	0	+
#Deleted in new
chr12	49371227	49371290	ENSG00000123352.17|SPATS2|pc|chr12:49371227:49371290:+	0	+
#Deleted in new
chr12	49387053	49387137	ENSG00000123352.17|SPATS2|pc|chr12:49387053:49387137:+	0	+
#Deleted in new
chr12	49406472	49406565	ENSG00000123352.17|SPATS2|pc|chr12:49406472:49406565:+	0	+
#Deleted in new
chr12	49462274	49463625	ENSG00000123352.17|SPATS2|pc|chr12:49462274:49463625:+	0	+
#Deleted in new
chr12	49486249	49486348	ENSG00000123352.17|SPATS2|pc|chr12:49486249:49486348:+	0	+
#Partially deleted in new
chr12	49490681	49491159	ENSG00000123352.17|SPATS2|pc|chr12:49490681:49491159:+	0	+
#Partially deleted in new
chr12	49512861	49512905	ENSG00000123352.17|SPATS2|pc|chr12:49512861:49512905:+	0	+
#Deleted in new
chr12	49546137	49546240	ENSG00000135519.6|KCNH3|pc|chr12:49546137:49546240:+	0	+
#Deleted in new
chr12	49573657	49573728	ENSG00000110844.13|PRPF40B|pc|chr12:49573657:49573728:+	0	+
#Partially deleted in new
chr12	49576839	49577314	ENSG00000257964.1|AC020612.3|lncRNA|chr12:49576839:49577314:-	0	-
#Deleted in new
chr12	49583560	49583747	ENSG00000110844.13|PRPF40B|pc|chr12:49583560:49583747:+	0	+
#Deleted in new
chr12	49622636	49622734	ENSG00000110844.13|PRPF40B|pc|chr12:49622636:49622734:+	0	+
#Split in new
chr1	24968422	24970865	ENSG00000261025.1|AL445471.2|lncRNA|chr1:24968422:24970865:-	0	-
#Deleted in new
chr12	49707933	49708165	ENSG00000161791.13|FMNL3|pc|chr12:49707933:49708165:-	0	-
#Deleted in new
chr12	49738992	49739082	ENSG00000139644.12|TMBIM6|pc|chr12:49738992:49739082:+	0	+
#Partially deleted in new
chr12	49743416	49743565	ENSG00000139644.12|TMBIM6|pc|chr12:49743416:49743565:+	0	+
#Deleted in new
chr12	49749617	49749734	ENSG00000139644.12|TMBIM6|pc|chr12:49749617:49749734:+	0	+
#Deleted in new
chr12	49749617	49749856	ENSG00000139644.12|TMBIM6|pc|chr12:49749617:49749856:+	0	+
#Deleted in new
chr12	4981160	4981282	ENSG00000256654.3|AC005906.2|lncRNA|chr12:4981160:4981282:+	0	+
#Deleted in new
chr12	4981160	4981540	ENSG00000256654.3|AC005906.2|lncRNA|chr12:4981160:4981540:+	0	+
#Partially deleted in new
chr12	49831958	49832466	ENSG00000258057.5|BCDIN3D-AS1|lncRNA|chr12:49831958:49832466:+	0	+
#Deleted in new
chr12	49840126	49840204	ENSG00000258057.5|BCDIN3D-AS1|lncRNA|chr12:49840126:49840204:+	0	+
#Deleted in new
chr12	49861206	49861229	ENSG00000257253.2|AC131157.1|lncRNA|chr12:49861206:49861229:+	0	+
#Partially deleted in new
chr12	49864050	49864197	ENSG00000257253.2|AC131157.1|lncRNA|chr12:49864050:49864197:+	0	+
#Deleted in new
chr12	49865551	49865802	ENSG00000257253.2|AC131157.1|lncRNA|chr12:49865551:49865802:+	0	+
#Deleted in new
chr12	49920005	49920518	ENSG00000257771.5|LINC02395|lncRNA|chr12:49920005:49920518:+	0	+
#Deleted in new
chr12	49926947	49927083	ENSG00000257771.5|LINC02395|lncRNA|chr12:49926947:49927083:+	0	+
#Deleted in new
chr12	4994312	4994504	ENSG00000256654.3|AC005906.2|lncRNA|chr12:4994312:4994504:+	0	+
#Deleted in new
chr12	49951918	49952088	ENSG00000257588.1|AC025154.2|lncRNA|chr12:49951918:49952088:-	0	-
#Deleted in new
chr12	49951967	49952088	ENSG00000257588.1|AC025154.2|lncRNA|chr12:49951967:49952088:-	0	-
#Deleted in new
chr12	49970374	49970556	ENSG00000086159.12|AQP6|pc|chr12:49970374:49970556:+	0	+
#Partially deleted in new
chr12	50016939	50017084	ENSG00000161800.12|RACGAP1|pc|chr12:50016939:50017084:-	0	-
#Partially deleted in new
chr12	50019743	50019806	ENSG00000161800.12|RACGAP1|pc|chr12:50019743:50019806:-	0	-
#Deleted in new
chr12	50031696	50031867	ENSG00000161800.12|RACGAP1|pc|chr12:50031696:50031867:-	0	-
#Deleted in new
chr12	50032969	50033136	ENSG00000161800.12|RACGAP1|pc|chr12:50032969:50033136:-	0	-
#Partially deleted in new
chr12	50076967	50077049	ENSG00000110881.11|ASIC1|pc|chr12:50076967:50077049:+	0	+
#Partially deleted in new
chr12	50076967	50077060	ENSG00000110881.11|ASIC1|pc|chr12:50076967:50077060:+	0	+
#Deleted in new
chr12	5010149	5011745	ENSG00000256654.3|AC005906.2|lncRNA|chr12:5010149:5011745:+	0	+
#Deleted in new
chr12	50112831	50112903	ENSG00000178449.8|COX14|pc|chr12:50112831:50112903:+	0	+
#Deleted in new
chr12	50118492	50118552	ENSG00000178449.8|COX14|pc|chr12:50118492:50118552:+	0	+
#Deleted in new
chr12	50123363	50123782	ENSG00000272368.2|AC074032.1|lncRNA|chr12:50123363:50123782:+	0	+
#Partially deleted in new
chr12	50133078	50134068	ENSG00000139624.12|CERS5|pc|chr12:50133078:50134068:-	0	-
#Deleted in new
chr12	50133784	50134068	ENSG00000139624.12|CERS5|pc|chr12:50133784:50134068:-	0	-
#Partially deleted in new
chr12	50135432	50135537	ENSG00000139624.12|CERS5|pc|chr12:50135432:50135537:-	0	-
#Partially deleted in new
chr12	5013710	5013945	ENSG00000256654.3|AC005906.2|lncRNA|chr12:5013710:5013945:+	0	+
#Deleted in new
chr12	50144202	50144499	ENSG00000139624.12|CERS5|pc|chr12:50144202:50144499:-	0	-
#Deleted in new
chr12	50144348	50144364	ENSG00000139624.12|CERS5|pc|chr12:50144348:50144364:-	0	-
#Deleted in new
chr12	50144768	50144969	ENSG00000139624.12|CERS5|pc|chr12:50144768:50144969:-	0	-
#Deleted in new
chr12	50144768	50145061	ENSG00000139624.12|CERS5|pc|chr12:50144768:50145061:-	0	-
#Deleted in new
chr12	50147325	50147403	ENSG00000139624.12|CERS5|pc|chr12:50147325:50147403:-	0	-
#Deleted in new
chr12	50148471	50148588	ENSG00000139624.12|CERS5|pc|chr12:50148471:50148588:-	0	-
#Deleted in new
chr12	50153828	50153951	ENSG00000139624.12|CERS5|pc|chr12:50153828:50153951:-	0	-
#Deleted in new
chr12	50154227	50154320	ENSG00000139624.12|CERS5|pc|chr12:50154227:50154320:-	0	-
#Partially deleted in new
chr12	50165935	50166316	ENSG00000139624.12|CERS5|pc|chr12:50165935:50166316:-	0	-
#Deleted in new
chr12	50191332	50191363	ENSG00000257298.1|AC008147.2|lncRNA|chr12:50191332:50191363:-	0	-
#Deleted in new
chr12	50229789	50229984	ENSG00000257256.1|AC008147.1|lncRNA|chr12:50229789:50229984:+	0	+
#Partially deleted in new
chr12	5023523	5023621	ENSG00000256654.3|AC005906.2|lncRNA|chr12:5023523:5023621:+	0	+
#Partially deleted in new
chr12	50326229	50327257	ENSG00000185958.9|FAM186A|pc|chr12:50326229:50327257:-	0	-
#Deleted in new
chr12	50392382	50392588	ENSG00000161813.21|LARP4|pc|chr12:50392382:50392588:+	0	+
#Deleted in new
chr12	50402674	50402813	ENSG00000161813.21|LARP4|pc|chr12:50402674:50402813:+	0	+
#Deleted in new
chr12	50412404	50412453	ENSG00000161813.21|LARP4|pc|chr12:50412404:50412453:+	0	+
#Deleted in new
chr12	50412404	50412457	ENSG00000161813.21|LARP4|pc|chr12:50412404:50412457:+	0	+
#Deleted in new
chr12	50415711	50415831	ENSG00000161813.21|LARP4|pc|chr12:50415711:50415831:+	0	+
#Deleted in new
chr12	50416345	50416434	ENSG00000161813.21|LARP4|pc|chr12:50416345:50416434:+	0	+
#Deleted in new
chr12	50420787	50420887	ENSG00000161813.21|LARP4|pc|chr12:50420787:50420887:+	0	+
#Deleted in new
chr1	25043706	25043836	ENSG00000233755.1|AL050344.1|lncRNA|chr1:25043706:25043836:-	0	-
#Deleted in new
chr12	50441295	50441305	ENSG00000161813.21|LARP4|pc|chr12:50441295:50441305:+	0	+
#Deleted in new
chr12	50655010	50655040	ENSG00000066084.12|DIP2B|pc|chr12:50655010:50655040:+	0	+
#Partially deleted in new
chr12	50678678	50680282	ENSG00000066084.12|DIP2B|pc|chr12:50678678:50680282:+	0	+
#Deleted in new
chr12	50763709	50763741	ENSG00000123268.8|ATF1|pc|chr12:50763709:50763741:+	0	+
#Partially deleted in new
chr12	50764479	50764554	ENSG00000123268.8|ATF1|pc|chr12:50764479:50764554:+	0	+
#Deleted in new
chr12	50764508	50764647	ENSG00000123268.8|ATF1|pc|chr12:50764508:50764647:+	0	+
#Deleted in new
chr12	50775581	50775658	ENSG00000123268.8|ATF1|pc|chr12:50775581:50775658:+	0	+
#Deleted in new
chr12	50788207	50788325	ENSG00000123268.8|ATF1|pc|chr12:50788207:50788325:+	0	+
#Deleted in new
chr12	50842919	50843151	ENSG00000186452.10|TMPRSS12|pc|chr12:50842919:50843151:+	0	+
#Deleted in new
chr12	50842932	50843151	ENSG00000186452.10|TMPRSS12|pc|chr12:50842932:50843151:+	0	+
#Deleted in new
chr12	50923471	50924080	ENSG00000185432.11|METTL7A|pc|chr12:50923471:50924080:+	0	+
#Deleted in new
chr12	50924004	50924080	ENSG00000185432.11|METTL7A|pc|chr12:50924004:50924080:+	0	+
#Partially deleted in new
chr12	50929913	50932510	ENSG00000185432.11|METTL7A|pc|chr12:50929913:50932510:+	0	+
#Partially deleted in new
chr12	50929913	50932517	ENSG00000185432.11|METTL7A|pc|chr12:50929913:50932517:+	0	+
#Partially deleted in new
chr12	50931597	50932438	ENSG00000185432.11|METTL7A|pc|chr12:50931597:50932438:+	0	+
#Partially deleted in new
chr12	50931614	50932507	ENSG00000185432.11|METTL7A|pc|chr12:50931614:50932507:+	0	+
#Deleted in new
chr12	51006173	51006271	ENSG00000110911.14|SLC11A2|pc|chr12:51006173:51006271:-	0	-
#Partially deleted in new
chr12	51058603	51058738	ENSG00000050426.15|LETMD1|pc|chr12:51058603:51058738:+	0	+
#Deleted in new
chr1	25110457	25110829	ENSG00000233755.1|AL050344.1|lncRNA|chr1:25110457:25110829:-	0	-
#Partially deleted in new
chr1	25112878	25113119	ENSG00000233755.1|AL050344.1|lncRNA|chr1:25112878:25113119:-	0	-
#Partially deleted in new
chr1	25112878	25113120	ENSG00000233755.1|AL050344.1|lncRNA|chr1:25112878:25113120:-	0	-
#Deleted in new
chr12	51201683	51202581	ENSG00000278126.1|AC139768.1|lncRNA|chr12:51201683:51202581:-	0	-
#Deleted in new
chr12	51251464	51251583	ENSG00000170545.16|SMAGP|pc|chr12:51251464:51251583:-	0	-
#Deleted in new
chr12	51253573	51253593	ENSG00000170545.16|SMAGP|pc|chr12:51253573:51253593:-	0	-
#Deleted in new
chr12	51288107	51288188	ENSG00000110934.10|BIN2|pc|chr12:51288107:51288188:-	0	-
#Deleted in new
chr12	51304119	51304265	ENSG00000110934.10|BIN2|pc|chr12:51304119:51304265:-	0	-
#Partially deleted in new
chr12	51324512	51324668	ENSG00000110934.10|BIN2|pc|chr12:51324512:51324668:-	0	-
#Deleted in new
chr12	51392790	51392867	ENSG00000139629.15|GALNT6|pc|chr12:51392790:51392867:-	0	-
#Deleted in new
chr12	51407802	51407897	ENSG00000050438.16|SLC4A8|pc|chr12:51407802:51407897:+	0	+
#Deleted in new
chr12	51501827	51502378	ENSG00000050438.16|SLC4A8|pc|chr12:51501827:51502378:+	0	+
#Deleted in new
chr1	2515257	2515401	ENSG00000157881.13|PANK4|pc|chr1:2515257:2515401:-	0	-
#Deleted in new
chr12	51768112	51768172	ENSG00000196876.15|SCN8A|pc|chr12:51768112:51768172:+	0	+
#Deleted in new
chr12	51823444	51823570	ENSG00000260473.2|AC068987.3|lncRNA|chr12:51823444:51823570:+	0	+
#Deleted in new
chr12	51823502	51823570	ENSG00000260473.2|AC068987.3|lncRNA|chr12:51823502:51823570:+	0	+
#Deleted in new
chr12	51824109	51824511	ENSG00000260473.2|AC068987.3|lncRNA|chr12:51824109:51824511:+	0	+
#Partially deleted in new
chr12	51825799	51825992	ENSG00000260473.2|AC068987.3|lncRNA|chr12:51825799:51825992:+	0	+
#Deleted in new
chr12	51831756	51831917	ENSG00000261308.2|FIGNL2|pc|chr12:51831756:51831917:-	0	-
#Deleted in new
chr12	51921651	51921827	ENSG00000139567.12|ACVRL1|pc|chr12:51921651:51921827:+	0	+
#Partially deleted in new
chr12	51960055	51960187	ENSG00000135503.12|ACVR1B|pc|chr12:51960055:51960187:+	0	+
#Partially deleted in new
chr12	52058458	52058619	ENSG00000259884.1|AC025259.3|lncRNA|chr12:52058458:52058619:-	0	-
#Deleted in new
chr1	25208138	25208222	ENSG00000231953.2|AL031432.1|lncRNA|chr1:25208138:25208222:+	0	+
#Deleted in new
chr12	52084743	52084829	ENSG00000272724.1|OR7E47P|lncRNA|chr12:52084743:52084829:+	0	+
#Deleted in new
chr1	25208533	25209437	ENSG00000231953.2|AL031432.1|lncRNA|chr1:25208533:25209437:+	0	+
#Deleted in new
chr12	52087587	52087684	ENSG00000272724.1|OR7E47P|lncRNA|chr12:52087587:52087684:+	0	+
#Deleted in new
chr12	52094678	52094852	ENSG00000257989.1|AC078864.1|lncRNA|chr12:52094678:52094852:-	0	-
#Deleted in new
chr12	52164800	52164951	ENSG00000258279.3|LINC00592|lncRNA|chr12:52164800:52164951:+	0	+
#Deleted in new
chr12	52223445	52223800	ENSG00000258279.3|LINC00592|lncRNA|chr12:52223445:52223800:+	0	+
#Deleted in new
chr12	52223445	52223804	ENSG00000258279.3|LINC00592|lncRNA|chr12:52223445:52223804:+	0	+
#Split in new
chr12	52251776	52252186	ENSG00000135480.15|KRT7|pc|chr12:52251776:52252186:+	0	+
#Deleted in new
chr12	52274646	52275077	ENSG00000257830.1|AC021066.1|lncRNA|chr12:52274646:52275077:-	0	-
#Deleted in new
chr12	52274674	52274722	ENSG00000170442.11|KRT86|pc|chr12:52274674:52274722:+	0	+
#Partially deleted in new
chr12	52278940	52279156	ENSG00000257830.1|AC021066.1|lncRNA|chr12:52278940:52279156:-	0	-
#Partially deleted in new
chr1	25230308	25232211	ENSG00000117614.9|SYF2|pc|chr1:25230308:25232211:-	0	-
#Partially deleted in new
chr1	25232585	25234775	ENSG00000284602.1|AL031432.4|lncRNA|chr1:25232585:25234775:+	0	+
#Deleted in new
chr1	25239493	25240253	ENSG00000284657.1|AL031432.5|lncRNA|chr1:25239493:25240253:+	0	+
#Deleted in new
chr1	25245990	25246016	ENSG00000117616.17|RSRP1|pc|chr1:25245990:25246016:-	0	-
#Partially deleted in new
chr12	52470021	52470630	ENSG00000170465.9|KRT6C|pc|chr12:52470021:52470630:-	0	-
#Deleted in new
chr1	25247836	25248321	ENSG00000272432.1|AL031432.3|lncRNA|chr1:25247836:25248321:+	0	+
#Deleted in new
chr1	25253113	25253937	ENSG00000117616.17|RSRP1|pc|chr1:25253113:25253937:-	0	-
#Deleted in new
chr12	52599270	52599302	ENSG00000170486.10|KRT72|pc|chr12:52599270:52599302:-	0	-
#Partially deleted in new
chr12	52612340	52612829	ENSG00000257495.5|KRT73-AS1|lncRNA|chr12:52612340:52612829:+	0	+
#Deleted in new
chr12	52612734	52612829	ENSG00000257495.5|KRT73-AS1|lncRNA|chr12:52612734:52612829:+	0	+
#Deleted in new
chr1	25267739	25267885	ENSG00000117616.17|RSRP1|pc|chr1:25267739:25267885:-	0	-
#Partially deleted in new
chr1	25267739	25267915	ENSG00000117616.17|RSRP1|pc|chr1:25267739:25267915:-	0	-
#Deleted in new
chr12	5290479	5290624	ENSG00000256417.1|AC006206.2|lncRNA|chr12:5290479:5290624:+	0	+
#Deleted in new
chr12	53013555	53013921	ENSG00000257475.2|AC068888.2|lncRNA|chr12:53013555:53013921:+	0	+
#Deleted in new
chr12	53021715	53021758	ENSG00000063046.17|EIF4B|pc|chr12:53021715:53021758:+	0	+
#Deleted in new
chr12	53025226	53025345	ENSG00000063046.17|EIF4B|pc|chr12:53025226:53025345:+	0	+
#Partially deleted in new
chr12	53042884	53043147	ENSG00000257337.6|AC068888.1|lncRNA|chr12:53042884:53043147:-	0	-
#Partially deleted in new
chr1	25304386	25304821	ENSG00000117616.17|RSRP1|pc|chr1:25304386:25304821:-	0	-
#Deleted in new
chr1	25306895	25306949	ENSG00000117616.17|RSRP1|pc|chr1:25306895:25306949:-	0	-
#Deleted in new
chr1	25307646	25307816	ENSG00000187010.19|RHD|pc|chr1:25307646:25307816:+	0	+
#Deleted in new
chr12	53078060	53078171	ENSG00000167778.8|SPRYD3|pc|chr12:53078060:53078171:-	0	-
#Deleted in new
chr12	53164621	53164755	ENSG00000139631.18|CSAD|pc|chr12:53164621:53164755:-	0	-
#Deleted in new
chr12	53166204	53166327	ENSG00000139631.18|CSAD|pc|chr12:53166204:53166327:-	0	-
#Deleted in new
chr1	25318062	25318271	ENSG00000117616.17|RSRP1|pc|chr1:25318062:25318271:-	0	-
#Deleted in new
chr12	53201071	53201194	ENSG00000139626.15|ITGB7|pc|chr12:53201071:53201194:-	0	-
#Deleted in new
chr12	53201071	53201300	ENSG00000139626.15|ITGB7|pc|chr12:53201071:53201300:-	0	-
#Deleted in new
chr12	53201117	53201194	ENSG00000139626.15|ITGB7|pc|chr12:53201117:53201194:-	0	-
#Deleted in new
chr12	53201146	53201194	ENSG00000139626.15|ITGB7|pc|chr12:53201146:53201194:-	0	-
#Deleted in new
chr12	53244519	53245134	ENSG00000283536.1|AC021072.1|pc|chr12:53244519:53245134:+	0	+
#Partially deleted in new
chr1	25328897	25329211	ENSG00000187010.19|RHD|pc|chr1:25328897:25329211:+	0	+
#Split in new
chr1	25328897	25330445	ENSG00000187010.19|RHD|pc|chr1:25328897:25330445:+	0	+
#Deleted in new
chr12	53296429	53296467	ENSG00000123349.13|PFDN5|pc|chr12:53296429:53296467:+	0	+
#Deleted in new
chr12	53296429	53296471	ENSG00000123349.13|PFDN5|pc|chr12:53296429:53296471:+	0	+
#Deleted in new
chr12	53296429	53296551	ENSG00000123349.13|PFDN5|pc|chr12:53296429:53296551:+	0	+
#Deleted in new
chr12	53296429	53296706	ENSG00000123349.13|PFDN5|pc|chr12:53296429:53296706:+	0	+
#Deleted in new
chr12	53296453	53296551	ENSG00000123349.13|PFDN5|pc|chr12:53296453:53296551:+	0	+
#Deleted in new
chr12	53297371	53297404	ENSG00000123349.13|PFDN5|pc|chr12:53297371:53297404:+	0	+
#Partially deleted in new
chr12	53298044	53298488	ENSG00000123349.13|PFDN5|pc|chr12:53298044:53298488:+	0	+
#Deleted in new
chr12	53298654	53299129	ENSG00000257605.2|AC073611.1|lncRNA|chr12:53298654:53299129:-	0	-
#Deleted in new
chr1	25335367	25335835	ENSG00000117616.17|RSRP1|pc|chr1:25335367:25335835:-	0	-
#Deleted in new
chr1	25335845	25336265	ENSG00000117616.17|RSRP1|pc|chr1:25335845:25336265:-	0	-
#Split in new
chr1	25337039	25337401	ENSG00000117616.17|RSRP1|pc|chr1:25337039:25337401:-	0	-
#Split in new
chr1	25337039	25337411	ENSG00000117616.17|RSRP1|pc|chr1:25337039:25337411:-	0	-
#Split in new
chr1	25337039	25338165	ENSG00000117616.17|RSRP1|pc|chr1:25337039:25338165:-	0	-
#Deleted in new
chr1	25337713	25338190	ENSG00000117616.17|RSRP1|pc|chr1:25337713:25338190:-	0	-
#Deleted in new
chr1	25337977	25338100	ENSG00000117616.17|RSRP1|pc|chr1:25337977:25338100:-	0	-
#Deleted in new
chr1	25338068	25338213	ENSG00000117616.17|RSRP1|pc|chr1:25338068:25338213:-	0	-
#Partially deleted in new
chr1	25342591	25343073	ENSG00000183726.10|TMEM50A|pc|chr1:25342591:25343073:+	0	+
#Partially deleted in new
chr12	53442694	53443277	ENSG00000205352.10|PRR13|pc|chr12:53442694:53443277:+	0	+
#Deleted in new
chr12	53460330	53460425	ENSG00000197111.15|PCBP2|pc|chr12:53460330:53460425:+	0	+
#Deleted in new
chr12	53460330	53460686	ENSG00000197111.15|PCBP2|pc|chr12:53460330:53460686:+	0	+
#Deleted in new
chr12	53522607	53522701	ENSG00000170653.18|ATF7|pc|chr12:53522607:53522701:-	0	-
#Deleted in new
chr12	53673695	53673812	ENSG00000135390.17|ATP5G2|pc|chr12:53673695:53673812:-	0	-
#Deleted in new
chr12	53722899	53722936	ENSG00000012822.15|CALCOCO1|pc|chr12:53722899:53722936:-	0	-
#Partially deleted in new
chr12	53724043	53724251	ENSG00000012822.15|CALCOCO1|pc|chr12:53724043:53724251:-	0	-
#Partially deleted in new
chr12	5383041	5383653	ENSG00000256417.1|AC006206.2|lncRNA|chr12:5383041:5383653:+	0	+
#Partially deleted in new
chr1	25385497	25385844	ENSG00000188672.17|RHCE|pc|chr1:25385497:25385844:-	0	-
#Deleted in new
chr12	5388588	5388621	ENSG00000255983.1|AC007848.1|lncRNA|chr12:5388588:5388621:+	0	+
#Deleted in new
chr12	5405352	5405456	ENSG00000255983.1|AC007848.1|lncRNA|chr12:5405352:5405456:+	0	+
#Deleted in new
chr1	25411339	25411478	ENSG00000188672.17|RHCE|pc|chr1:25411339:25411478:-	0	-
#Deleted in new
chr12	54129517	54129752	ENSG00000123415.15|SMUG1|pc|chr12:54129517:54129752:-	0	-
#Deleted in new
chr12	54143981	54144084	ENSG00000283073.1|SMUG1-AS1|lncRNA|chr12:54143981:54144084:+	0	+
#Partially deleted in new
chr12	54165373	54165478	ENSG00000123415.15|SMUG1|pc|chr12:54165373:54165478:-	0	-
#Partially deleted in new
chr12	54181452	54181647	ENSG00000123415.15|SMUG1|pc|chr12:54181452:54181647:-	0	-
#Partially deleted in new
chr12	54181470	54181647	ENSG00000123415.15|SMUG1|pc|chr12:54181470:54181647:-	0	-
#Partially deleted in new
chr12	54186846	54187011	ENSG00000123415.15|SMUG1|pc|chr12:54186846:54187011:-	0	-
#Deleted in new
chr12	54186982	54187011	ENSG00000123415.15|SMUG1|pc|chr12:54186982:54187011:-	0	-
#Deleted in new
chr12	54187213	54187295	ENSG00000123415.15|SMUG1|pc|chr12:54187213:54187295:-	0	-
#Deleted in new
chr12	54188510	54188596	ENSG00000123415.15|SMUG1|pc|chr12:54188510:54188596:-	0	-
#Deleted in new
chr12	54188514	54188596	ENSG00000123415.15|SMUG1|pc|chr12:54188514:54188596:-	0	-
#Deleted in new
chr12	54188514	54188607	ENSG00000123415.15|SMUG1|pc|chr12:54188514:54188607:-	0	-
#Deleted in new
chr12	54188514	54188622	ENSG00000123415.15|SMUG1|pc|chr12:54188514:54188622:-	0	-
#Partially deleted in new
chr12	54188514	54188957	ENSG00000123415.15|SMUG1|pc|chr12:54188514:54188957:-	0	-
#Partially deleted in new
chr12	54188676	54188957	ENSG00000123415.15|SMUG1|pc|chr12:54188676:54188957:-	0	-
#Partially deleted in new
chr12	54188720	54188940	ENSG00000123415.15|SMUG1|pc|chr12:54188720:54188940:-	0	-
#Partially deleted in new
chr12	54188725	54188957	ENSG00000123415.15|SMUG1|pc|chr12:54188725:54188957:-	0	-
#Deleted in new
chr12	54188825	54188871	ENSG00000123415.15|SMUG1|pc|chr12:54188825:54188871:-	0	-
#Deleted in new
chr12	54276630	54277175	ENSG00000258344.1|AC078778.2|lncRNA|chr12:54276630:54277175:+	0	+
#Deleted in new
chr1	25428952	25429049	ENSG00000188672.17|RHCE|pc|chr1:25428952:25429049:-	0	-
#Deleted in new
chr12	54346611	54346674	ENSG00000111481.9|COPZ1|pc|chr12:54346611:54346674:+	0	+
#Deleted in new
chr12	54372893	54373031	ENSG00000161642.17|ZNF385A|pc|chr12:54372893:54373031:-	0	-
#Deleted in new
chr12	54372913	54373031	ENSG00000161642.17|ZNF385A|pc|chr12:54372913:54373031:-	0	-
#Deleted in new
chr12	54381297	54381447	ENSG00000161642.17|ZNF385A|pc|chr12:54381297:54381447:-	0	-
#Deleted in new
chr12	54436831	54436913	ENSG00000258137.5|AC079313.2|lncRNA|chr12:54436831:54436913:+	0	+
#Partially deleted in new
chr12	54436831	54437104	ENSG00000258137.5|AC079313.2|lncRNA|chr12:54436831:54437104:+	0	+
#Deleted in new
chr12	54466840	54466985	ENSG00000258086.1|AC079313.1|lncRNA|chr12:54466840:54466985:+	0	+
#Deleted in new
chr12	54468824	54468947	ENSG00000170627.10|GTSF1|pc|chr12:54468824:54468947:-	0	-
#Deleted in new
chr12	54468924	54468953	ENSG00000170627.10|GTSF1|pc|chr12:54468924:54468953:-	0	-
#Deleted in new
chr12	54510348	54510466	ENSG00000123338.12|NCKAP1L|pc|chr12:54510348:54510466:+	0	+
#Deleted in new
chr12	54630810	54630953	ENSG00000135413.8|LACRT|pc|chr12:54630810:54630953:-	0	-
#Deleted in new
chr12	54630811	54630953	ENSG00000135413.8|LACRT|pc|chr12:54630811:54630953:-	0	-
#Deleted in new
chr12	54631721	54631806	ENSG00000135413.8|LACRT|pc|chr12:54631721:54631806:-	0	-
#Deleted in new
chr12	54631737	54631806	ENSG00000135413.8|LACRT|pc|chr12:54631737:54631806:-	0	-
#Deleted in new
chr12	54631737	54631839	ENSG00000135413.8|LACRT|pc|chr12:54631737:54631839:-	0	-
#Deleted in new
chr12	54631926	54632381	ENSG00000135413.8|LACRT|pc|chr12:54631926:54632381:-	0	-
#Deleted in new
chr12	54632240	54632381	ENSG00000135413.8|LACRT|pc|chr12:54632240:54632381:-	0	-
#Partially deleted in new
chr12	54645983	54646150	ENSG00000161634.11|DCD|pc|chr12:54645983:54646150:-	0	-
#Partially deleted in new
chr12	54648245	54648493	ENSG00000161634.11|DCD|pc|chr12:54648245:54648493:-	0	-
#Deleted in new
chr12	54685068	54685273	ENSG00000257634.1|AC079310.1|lncRNA|chr12:54685068:54685273:+	0	+
#Deleted in new
chr12	54687079	54687434	ENSG00000257634.1|AC079310.1|lncRNA|chr12:54687079:54687434:+	0	+
#Deleted in new
chr12	54830518	54830875	ENSG00000172551.10|MUCL1|pc|chr12:54830518:54830875:+	0	+
#Deleted in new
chr12	54839368	54839447	ENSG00000172551.10|MUCL1|pc|chr12:54839368:54839447:+	0	+
#Deleted in new
chr12	54856838	54856892	ENSG00000172551.10|MUCL1|pc|chr12:54856838:54856892:+	0	+
#Deleted in new
chr12	54948017	54950390	ENSG00000135426.15|TESPA1|pc|chr12:54948017:54950390:-	0	-
#Deleted in new
chr12	54949950	54950390	ENSG00000135426.15|TESPA1|pc|chr12:54949950:54950390:-	0	-
#Deleted in new
chr12	54950077	54950390	ENSG00000135426.15|TESPA1|pc|chr12:54950077:54950390:-	0	-
#Deleted in new
chr12	54950079	54950390	ENSG00000135426.15|TESPA1|pc|chr12:54950079:54950390:-	0	-
#Deleted in new
chr12	54950080	54950390	ENSG00000135426.15|TESPA1|pc|chr12:54950080:54950390:-	0	-
#Deleted in new
chr12	54950169	54950390	ENSG00000135426.15|TESPA1|pc|chr12:54950169:54950390:-	0	-
#Deleted in new
chr12	54950329	54950390	ENSG00000135426.15|TESPA1|pc|chr12:54950329:54950390:-	0	-
#Deleted in new
chr12	54950353	54950390	ENSG00000135426.15|TESPA1|pc|chr12:54950353:54950390:-	0	-
#Deleted in new
chr12	54961167	54961267	ENSG00000135426.15|TESPA1|pc|chr12:54961167:54961267:-	0	-
#Deleted in new
chr1	2549919	2550119	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2549919:2550119:-	0	-
#Deleted in new
chr1	2549919	2550274	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2549919:2550274:-	0	-
#Deleted in new
chr1	2550073	2550274	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2550073:2550274:-	0	-
#Deleted in new
chr12	55014017	55014247	ENSG00000257870.1|AC027287.2|lncRNA|chr12:55014017:55014247:+	0	+
#Deleted in new
chr1	2550282	2550731	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2550282:2550731:-	0	-
#Deleted in new
chr1	2550572	2550731	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2550572:2550731:-	0	-
#Deleted in new
chr12	5509575	5509832	ENSG00000185652.11|NTF3|pc|chr12:5509575:5509832:+	0	+
#Deleted in new
chr1	2550991	2551598	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2550991:2551598:-	0	-
#Deleted in new
chr1	2550991	2552106	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2550991:2552106:-	0	-
#Deleted in new
chr1	2550991	2554150	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2550991:2554150:-	0	-
#Deleted in new
chr12	55132425	55132750	ENSG00000170605.6|OR9K2|pc|chr12:55132425:55132750:+	0	+
#Deleted in new
chr1	2551774	2552703	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2551774:2552703:-	0	-
#Deleted in new
chr12	5531868	5532114	ENSG00000047617.14|ANO2|pc|chr12:5531868:5532114:-	0	-
#Duplicated in new
chr12	55320566	55322364	ENSG00000205330.4|OR6C1|pc|chr12:55320566:55322364:+	0	+
#Deleted in new
chr12	5533830	5533955	ENSG00000047617.14|ANO2|pc|chr12:5533830:5533955:-	0	-
#Deleted in new
chr1	2553625	2553814	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2553625:2553814:-	0	-
#Split in new
chr12	55364875	55369279	ENSG00000187857.4|OR6C75|pc|chr12:55364875:55369279:+	0	+
#Partially deleted in new
chr12	55367135	55369279	ENSG00000187857.4|OR6C75|pc|chr12:55367135:55369279:+	0	+
#Duplicated in new
chr12	55400429	55401505	ENSG00000205328.2|OR6C65|pc|chr12:55400429:55401505:+	0	+
#Deleted in new
chr1	2554100	2554245	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2554100:2554245:-	0	-
#Deleted in new
chr1	2554100	2554296	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2554100:2554296:-	0	-
#Deleted in new
chr1	2554240	2554296	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2554240:2554296:-	0	-
#Deleted in new
chr12	55434733	55435131	ENSG00000258763.5|AC122685.1|lncRNA|chr12:55434733:55435131:-	0	-
#Deleted in new
chr12	55434754	55435131	ENSG00000258763.5|AC122685.1|lncRNA|chr12:55434754:55435131:-	0	-
#Deleted in new
chr12	55434756	55435131	ENSG00000258763.5|AC122685.1|lncRNA|chr12:55434756:55435131:-	0	-
#Deleted in new
chr12	55434759	55435131	ENSG00000258763.5|AC122685.1|lncRNA|chr12:55434759:55435131:-	0	-
#Deleted in new
chr12	55444068	55444145	ENSG00000179695.2|OR6C2|pc|chr12:55444068:55444145:+	0	+
#Deleted in new
chr12	55444075	55444159	ENSG00000179695.2|OR6C2|pc|chr12:55444075:55444159:+	0	+
#Partially deleted in new
chr1	2554723	2556696	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2554723:2556696:-	0	-
#Deleted in new
chr12	55479388	55479472	ENSG00000258763.5|AC122685.1|lncRNA|chr12:55479388:55479472:-	0	-
#Deleted in new
chr12	555289	555430	ENSG00000139044.10|B4GALNT3|pc|chr12:555289:555430:+	0	+
#Partially deleted in new
chr12	55549601	55549966	ENSG00000179626.4|OR6C4|pc|chr12:55549601:55549966:+	0	+
#Partially deleted in new
chr12	55549601	55550118	ENSG00000179626.4|OR6C4|pc|chr12:55549601:55550118:+	0	+
#Split in new
chr12	55551208	55555832	ENSG00000179626.4|OR6C4|pc|chr12:55551208:55555832:+	0	+
#Deleted in new
chr1	2555638	2555667	ENSG00000157873.17|TNFRSF14|pc|chr1:2555638:2555667:+	0	+
#Deleted in new
chr1	2555680	2555869	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2555680:2555869:-	0	-
#Deleted in new
chr1	2555790	2555850	ENSG00000157873.17|TNFRSF14|pc|chr1:2555790:2555850:+	0	+
#Deleted in new
chr1	2555801	2556252	ENSG00000157873.17|TNFRSF14|pc|chr1:2555801:2556252:+	0	+
#Deleted in new
chr12	55585414	55585471	ENSG00000258763.5|AC122685.1|lncRNA|chr12:55585414:55585471:-	0	-
#Deleted in new
chr1	2555979	2556032	ENSG00000157873.17|TNFRSF14|pc|chr1:2555979:2556032:+	0	+
#Deleted in new
chr1	2556221	2556261	ENSG00000157873.17|TNFRSF14|pc|chr1:2556221:2556261:+	0	+
#Partially deleted in new
chr1	2556365	2556733	ENSG00000157873.17|TNFRSF14|pc|chr1:2556365:2556733:+	0	+
#Deleted in new
chr1	2556385	2556455	ENSG00000157873.17|TNFRSF14|pc|chr1:2556385:2556455:+	0	+
#Deleted in new
chr12	55638911	55639316	ENSG00000258921.1|AC009779.5|lncRNA|chr12:55638911:55639316:-	0	-
#Partially deleted in new
chr1	2556404	2556733	ENSG00000157873.17|TNFRSF14|pc|chr1:2556404:2556733:+	0	+
#Partially deleted in new
chr1	2556405	2556733	ENSG00000157873.17|TNFRSF14|pc|chr1:2556405:2556733:+	0	+
#Partially deleted in new
chr1	2556427	2556696	ENSG00000238164.6|TNFRSF14-AS1|lncRNA|chr1:2556427:2556696:-	0	-
#Partially deleted in new
chr12	55721688	55722658	ENSG00000135437.9|RDH5|pc|chr12:55721688:55722658:+	0	+
#Deleted in new
chr12	55722194	55722311	ENSG00000135437.9|RDH5|pc|chr12:55722194:55722311:+	0	+
#Partially deleted in new
chr12	55761549	55762027	ENSG00000257509.1|AC073487.1|lncRNA|chr12:55761549:55762027:-	0	-
#Deleted in new
chr1	25590168	25590356	ENSG00000225643.1|AL606491.1|lncRNA|chr1:25590168:25590356:+	0	+
#Partially deleted in new
chr12	55913745	55914366	ENSG00000170473.16|PYM1|pc|chr12:55913745:55914366:-	0	-
#Partially deleted in new
chr12	55913825	55914366	ENSG00000170473.16|PYM1|pc|chr12:55913825:55914366:-	0	-
#Deleted in new
chr12	55930427	55930643	ENSG00000065357.19|DGKA|pc|chr12:55930427:55930643:+	0	+
#Deleted in new
chr12	55935304	55935402	ENSG00000065357.19|DGKA|pc|chr12:55935304:55935402:+	0	+
#Deleted in new
chr12	55935304	55935404	ENSG00000065357.19|DGKA|pc|chr12:55935304:55935404:+	0	+
#Deleted in new
chr12	55943296	55943420	ENSG00000065357.19|DGKA|pc|chr12:55943296:55943420:+	0	+
#Deleted in new
chr12	55973243	55973317	ENSG00000185664.14|PMEL|pc|chr12:55973243:55973317:-	0	-
#Deleted in new
chr12	55985599	55985723	ENSG00000111540.15|RAB5B|pc|chr12:55985599:55985723:+	0	+
#Deleted in new
chr12	55999332	55999458	ENSG00000139531.12|SUOX|pc|chr12:55999332:55999458:+	0	+
#Deleted in new
chr12	55999332	55999590	ENSG00000139531.12|SUOX|pc|chr12:55999332:55999590:+	0	+
#Deleted in new
chr12	56001308	56001472	ENSG00000139531.12|SUOX|pc|chr12:56001308:56001472:+	0	+
#Partially deleted in new
chr12	56005454	56005884	ENSG00000139531.12|SUOX|pc|chr12:56005454:56005884:+	0	+
#Deleted in new
chr12	56006423	56006641	ENSG00000139531.12|SUOX|pc|chr12:56006423:56006641:+	0	+
#Split in new
chr12	56044118	56044675	ENSG00000197728.9|RPS26|pc|chr12:56044118:56044675:+	0	+
#Partially deleted in new
chr12	56119923	56119939	ENSG00000258345.1|AC034102.7|lncRNA|chr12:56119923:56119939:-	0	-
#Partially deleted in new
chr1	2561493	2563749	ENSG00000157873.17|TNFRSF14|pc|chr1:2561493:2563749:+	0	+
#Deleted in new
chr12	56150795	56150985	ENSG00000257809.1|AC034102.5|lncRNA|chr12:56150795:56150985:-	0	-
#Partially deleted in new
chr12	56156936	56157545	ENSG00000196465.10|MYL6B|pc|chr12:56156936:56157545:+	0	+
#Partially deleted in new
chr12	56274015	56274878	ENSG00000062485.18|CS|pc|chr12:56274015:56274878:-	0	-
#Partially deleted in new
chr12	56275001	56275941	ENSG00000062485.18|CS|pc|chr12:56275001:56275941:-	0	-
#Deleted in new
chr12	56285144	56285244	ENSG00000062485.18|CS|pc|chr12:56285144:56285244:-	0	-
#Deleted in new
chr12	56308867	56309174	ENSG00000257740.1|AC073896.3|lncRNA|chr12:56308867:56309174:+	0	+
#Deleted in new
chr12	56309319	56309449	ENSG00000257740.1|AC073896.3|lncRNA|chr12:56309319:56309449:+	0	+
#Deleted in new
chr12	56309841	56310029	ENSG00000257727.5|CNPY2|pc|chr12:56309841:56310029:-	0	-
#Deleted in new
chr12	56309965	56310029	ENSG00000144785.8|AC073896.1|pc|chr12:56309965:56310029:-	0	-
#Deleted in new
chr12	56312406	56312499	ENSG00000257303.1|AC073896.2|lncRNA|chr12:56312406:56312499:+	0	+
#Deleted in new
chr12	56312522	56312885	ENSG00000257727.5|CNPY2|pc|chr12:56312522:56312885:-	0	-
#Deleted in new
chr1	2563147	2563452	ENSG00000157873.17|TNFRSF14|pc|chr1:2563147:2563452:+	0	+
#Deleted in new
chr1	2563147	2563504	ENSG00000157873.17|TNFRSF14|pc|chr1:2563147:2563504:+	0	+
#Deleted in new
chr1	2563147	2563826	ENSG00000157873.17|TNFRSF14|pc|chr1:2563147:2563826:+	0	+
#Deleted in new
chr1	2563147	2563829	ENSG00000157873.17|TNFRSF14|pc|chr1:2563147:2563829:+	0	+
#Deleted in new
chr12	56411943	56413190	ENSG00000276272.1|AC024884.2|lncRNA|chr12:56411943:56413190:-	0	-
#Deleted in new
chr1	2565052	2565382	ENSG00000157873.17|TNFRSF14|pc|chr1:2565052:2565382:+	0	+
#Deleted in new
chr12	56527864	56527963	ENSG00000076067.12|RBMS2|pc|chr12:56527864:56527963:+	0	+
#Deleted in new
chr12	56539685	56539764	ENSG00000076067.12|RBMS2|pc|chr12:56539685:56539764:+	0	+
#Deleted in new
chr12	56580277	56580375	ENSG00000076067.12|RBMS2|pc|chr12:56580277:56580375:+	0	+
#Deleted in new
chr1	2566409	2566605	ENSG00000225931.3|AL139246.2|lncRNA|chr1:2566409:2566605:+	0	+
#Partially deleted in new
chr12	56665631	56666266	ENSG00000110958.15|PTGES3|pc|chr12:56665631:56666266:-	0	-
#Deleted in new
chr12	56686868	56686917	ENSG00000110958.15|PTGES3|pc|chr12:56686868:56686917:-	0	-
#Partially deleted in new
chr12	56713868	56714439	ENSG00000196531.10|NACA|pc|chr12:56713868:56714439:-	0	-
#Partially deleted in new
chr12	56725262	56727197	ENSG00000196531.10|NACA|pc|chr12:56725262:56727197:-	0	-
#Deleted in new
chr12	56763197	56763414	ENSG00000025423.11|HSD17B6|pc|chr12:56763197:56763414:+	0	+
#Deleted in new
chr12	56763203	56763414	ENSG00000025423.11|HSD17B6|pc|chr12:56763203:56763414:+	0	+
#Deleted in new
chr12	56763217	56763414	ENSG00000025423.11|HSD17B6|pc|chr12:56763217:56763414:+	0	+
#Deleted in new
chr12	56763323	56763414	ENSG00000025423.11|HSD17B6|pc|chr12:56763323:56763414:+	0	+
#Deleted in new
chr12	56770314	56770544	ENSG00000025423.11|HSD17B6|pc|chr12:56770314:56770544:+	0	+
#Deleted in new
chr12	56785901	56786014	ENSG00000025423.11|HSD17B6|pc|chr12:56785901:56786014:+	0	+
#Deleted in new
chr12	56785928	56786014	ENSG00000025423.11|HSD17B6|pc|chr12:56785928:56786014:+	0	+
#Deleted in new
chr1	2567865	2568054	ENSG00000225931.3|AL139246.2|lncRNA|chr1:2567865:2568054:+	0	+
#Deleted in new
chr1	2568976	2569888	ENSG00000225931.3|AL139246.2|lncRNA|chr1:2568976:2569888:+	0	+
#Partially deleted in new
chr12	56957149	56959374	ENSG00000139547.7|RDH16|pc|chr12:56957149:56959374:-	0	-
#Deleted in new
chr1	25709601	25710145	ENSG00000117643.14|MAN1C1|pc|chr1:25709601:25710145:+	0	+
#Deleted in new
chr12	57100845	57100899	ENSG00000166888.11|STAT6|pc|chr12:57100845:57100899:-	0	-
#Partially deleted in new
chr12	57103272	57104586	ENSG00000166888.11|STAT6|pc|chr12:57103272:57104586:-	0	-
#Deleted in new
chr12	57305639	57305663	ENSG00000179912.20|R3HDM2|pc|chr12:57305639:57305663:-	0	-
#Deleted in new
chr12	5739907	5739968	ENSG00000047617.14|ANO2|pc|chr12:5739907:5739968:-	0	-
#Partially deleted in new
chr12	57431115	57431430	ENSG00000258001.1|AC126614.1|lncRNA|chr12:57431115:57431430:+	0	+
#Deleted in new
chr12	57433702	57433935	ENSG00000258001.1|AC126614.1|lncRNA|chr12:57433702:57433935:+	0	+
#Deleted in new
chr12	57483894	57483963	ENSG00000123329.17|ARHGAP9|pc|chr12:57483894:57483963:-	0	-
#Deleted in new
chr12	57483894	57484033	ENSG00000123329.17|ARHGAP9|pc|chr12:57483894:57484033:-	0	-
#Deleted in new
chr12	57487293	57487825	ENSG00000166986.14|MARS|pc|chr12:57487293:57487825:+	0	+
#Deleted in new
chr12	57487385	57487473	ENSG00000166986.14|MARS|pc|chr12:57487385:57487473:+	0	+
#Partially deleted in new
chr12	57503985	57504299	ENSG00000166986.14|MARS|pc|chr12:57503985:57504299:+	0	+
#Partially deleted in new
chr12	57538252	57538347	ENSG00000175203.15|DCTN2|pc|chr12:57538252:57538347:-	0	-
#Deleted in new
chr12	57597957	57598062	ENSG00000166908.17|PIP4K2C|pc|chr12:57597957:57598062:+	0	+
#Duplicated in new
chr12	57747017	57747855	ENSG00000135452.9|TSPAN31|pc|chr12:57747017:57747855:+	0	+
#Duplicated in new
chr12	57747215	57747656	ENSG00000135452.9|TSPAN31|pc|chr12:57747215:57747656:+	0	+
#Partially deleted in new
chr12	57749453	57749795	ENSG00000135446.16|CDK4|pc|chr12:57749453:57749795:-	0	-
#Deleted in new
chr12	57750441	57750563	ENSG00000135446.16|CDK4|pc|chr12:57750441:57750563:-	0	-
#Deleted in new
chr1	25775931	25776029	ENSG00000117643.14|MAN1C1|pc|chr1:25775931:25776029:+	0	+
#Deleted in new
chr12	57774628	57774767	ENSG00000123427.16|EEF1AKMT3|pc|chr12:57774628:57774767:+	0	+
#Deleted in new
chr1	25777588	25777658	ENSG00000117643.14|MAN1C1|pc|chr1:25777588:25777658:+	0	+
#Deleted in new
chr12	57782880	57782907	ENSG00000123297.17|TSFM|pc|chr12:57782880:57782907:+	0	+
#Deleted in new
chr12	57783614	57783652	ENSG00000123297.17|TSFM|pc|chr12:57783614:57783652:+	0	+
#Deleted in new
chr12	57783614	57783652	ENSG00000257921.5|AC025165.3|pc|chr12:57783614:57783652:+	0	+
#Deleted in new
chr12	57783940	57784170	ENSG00000123297.17|TSFM|pc|chr12:57783940:57784170:+	0	+
#Deleted in new
chr12	57783940	57784170	ENSG00000257921.5|AC025165.3|pc|chr12:57783940:57784170:+	0	+
#Partially deleted in new
chr12	57803837	57804415	ENSG00000270039.1|AC025165.5|lncRNA|chr12:57803837:57804415:+	0	+
#Deleted in new
chr1	25781250	25781260	ENSG00000117643.14|MAN1C1|pc|chr1:25781250:25781260:+	0	+
#Deleted in new
chr12	57872852	57872976	ENSG00000245651.2|AC083805.1|lncRNA|chr12:57872852:57872976:-	0	-
#Deleted in new
chr12	57886360	57886696	ENSG00000245651.2|AC083805.1|lncRNA|chr12:57886360:57886696:-	0	-
#Deleted in new
chr12	57931527	57931737	ENSG00000257698.1|AC084033.3|lncRNA|chr12:57931527:57931737:-	0	-
#Deleted in new
chr12	57931568	57931737	ENSG00000257698.1|AC084033.3|lncRNA|chr12:57931568:57931737:-	0	-
#Deleted in new
chr12	57931587	57931737	ENSG00000257698.1|AC084033.3|lncRNA|chr12:57931587:57931737:-	0	-
#Partially deleted in new
chr12	57935073	57935553	ENSG00000257698.1|AC084033.3|lncRNA|chr12:57935073:57935553:-	0	-
#Partially deleted in new
chr12	57935838	57936063	ENSG00000257698.1|AC084033.3|lncRNA|chr12:57935838:57936063:-	0	-
#Partially deleted in new
chr12	57935838	57936079	ENSG00000257698.1|AC084033.3|lncRNA|chr12:57935838:57936079:-	0	-
#Partially deleted in new
chr12	57935838	57936175	ENSG00000257698.1|AC084033.3|lncRNA|chr12:57935838:57936175:-	0	-
#Deleted in new
chr12	57949740	57949832	ENSG00000166896.7|ATP23|pc|chr12:57949740:57949832:+	0	+
#Deleted in new
chr1	25802015	25802117	ENSG00000162430.16|SELENON|pc|chr1:25802015:25802117:+	0	+
#Deleted in new
chr12	58093326	58093362	ENSG00000257541.1|LINC02403|lncRNA|chr12:58093326:58093362:+	0	+
#Partially deleted in new
chr12	58094913	58098013	ENSG00000279134.1|AC090643.1|lncRNA|chr12:58094913:58098013:-	0	-
#Deleted in new
chr1	2581559	2581650	ENSG00000228037.1|AL139246.3|lncRNA|chr1:2581559:2581650:+	0	+
#Deleted in new
chr1	25818639	25818852	ENSG00000117640.17|MTFR1L|pc|chr1:25818639:25818852:+	0	+
#Deleted in new
chr1	2583369	2583495	ENSG00000228037.1|AL139246.3|lncRNA|chr1:2583369:2583495:+	0	+
#Deleted in new
chr1	25834005	25834331	ENSG00000127423.10|AUNIP|pc|chr1:25834005:25834331:-	0	-
#Deleted in new
chr12	5836777	5836780	ENSG00000047617.14|ANO2|pc|chr12:5836777:5836780:-	0	-
#Deleted in new
chr1	2584124	2584533	ENSG00000228037.1|AL139246.3|lncRNA|chr1:2584124:2584533:+	0	+
#Deleted in new
chr12	58570701	58570780	ENSG00000257259.1|LINC02388|lncRNA|chr12:58570701:58570780:-	0	-
#Deleted in new
chr12	58571327	58571432	ENSG00000257259.1|LINC02388|lncRNA|chr12:58571327:58571432:-	0	-
#Deleted in new
chr12	585864	585998	ENSG00000256020.1|AC006205.2|lncRNA|chr12:585864:585998:-	0	-
#Deleted in new
chr1	25859612	25859875	ENSG00000236528.1|AL033528.2|lncRNA|chr1:25859612:25859875:+	0	+
#Partially deleted in new
chr12	58608877	58609549	ENSG00000257259.1|LINC02388|lncRNA|chr12:58608877:58609549:-	0	-
#Deleted in new
chr1	2586490	2586591	ENSG00000157870.14|FAM213B|pc|chr1:2586490:2586591:+	0	+
#Deleted in new
chr1	2586539	2586591	ENSG00000157870.14|FAM213B|pc|chr1:2586539:2586591:+	0	+
#Deleted in new
chr12	58756962	58757032	ENSG00000257259.1|LINC02388|lncRNA|chr12:58756962:58757032:-	0	-
#Deleted in new
chr12	58768611	58768732	ENSG00000257259.1|LINC02388|lncRNA|chr12:58768611:58768732:-	0	-
#Deleted in new
chr12	58781570	58781716	ENSG00000257259.1|LINC02388|lncRNA|chr12:58781570:58781716:-	0	-
#Deleted in new
chr12	58781570	58781747	ENSG00000257259.1|LINC02388|lncRNA|chr12:58781570:58781747:-	0	-
#Deleted in new
chr12	58800371	58800460	ENSG00000258231.5|AC020637.1|lncRNA|chr12:58800371:58800460:+	0	+
#Deleted in new
chr12	58800374	58800460	ENSG00000258231.5|AC020637.1|lncRNA|chr12:58800374:58800460:+	0	+
#Deleted in new
chr12	58800582	58800847	ENSG00000258231.5|AC020637.1|lncRNA|chr12:58800582:58800847:+	0	+
#Deleted in new
chr12	58800660	58800847	ENSG00000258231.5|AC020637.1|lncRNA|chr12:58800660:58800847:+	0	+
#Deleted in new
chr12	58805940	58805982	ENSG00000258231.5|AC020637.1|lncRNA|chr12:58805940:58805982:+	0	+
#Deleted in new
chr12	58805940	58806059	ENSG00000258231.5|AC020637.1|lncRNA|chr12:58805940:58806059:+	0	+
#Partially deleted in new
chr1	25884180	25885869	ENSG00000117632.22|STMN1|pc|chr1:25884180:25885869:-	0	-
#Deleted in new
chr1	25892513	25892607	ENSG00000117632.22|STMN1|pc|chr1:25892513:25892607:-	0	-
#Deleted in new
chr12	59411130	59411171	ENSG00000258214.1|AC108721.1|lncRNA|chr12:59411130:59411171:-	0	-
#Deleted in new
chr12	59689336	59689470	ENSG00000118596.11|SLC16A7|pc|chr12:59689336:59689470:+	0	+
#Deleted in new
chr12	59689344	59689390	ENSG00000118596.11|SLC16A7|pc|chr12:59689344:59689390:+	0	+
#Deleted in new
chr12	59689344	59689470	ENSG00000118596.11|SLC16A7|pc|chr12:59689344:59689470:+	0	+
#Deleted in new
chr12	59689347	59689470	ENSG00000118596.11|SLC16A7|pc|chr12:59689347:59689470:+	0	+
#Deleted in new
chr12	59689352	59689470	ENSG00000118596.11|SLC16A7|pc|chr12:59689352:59689470:+	0	+
#Deleted in new
chr12	59689361	59689470	ENSG00000118596.11|SLC16A7|pc|chr12:59689361:59689470:+	0	+
#Deleted in new
chr12	59689369	59689470	ENSG00000118596.11|SLC16A7|pc|chr12:59689369:59689470:+	0	+
#Deleted in new
chr12	59689370	59689470	ENSG00000118596.11|SLC16A7|pc|chr12:59689370:59689470:+	0	+
#Deleted in new
chr12	59733715	59733831	ENSG00000118596.11|SLC16A7|pc|chr12:59733715:59733831:+	0	+
#Deleted in new
chr12	59733718	59733831	ENSG00000118596.11|SLC16A7|pc|chr12:59733718:59733831:+	0	+
#Deleted in new
chr12	59733744	59733831	ENSG00000118596.11|SLC16A7|pc|chr12:59733744:59733831:+	0	+
#Deleted in new
chr12	59734049	59734085	ENSG00000118596.11|SLC16A7|pc|chr12:59734049:59734085:+	0	+
#Deleted in new
chr12	59734049	59734187	ENSG00000118596.11|SLC16A7|pc|chr12:59734049:59734187:+	0	+
#Deleted in new
chr12	59735929	59735982	ENSG00000118596.11|SLC16A7|pc|chr12:59735929:59735982:+	0	+
#Deleted in new
chr12	59735929	59735988	ENSG00000118596.11|SLC16A7|pc|chr12:59735929:59735988:+	0	+
#Deleted in new
chr12	59763954	59764077	ENSG00000118596.11|SLC16A7|pc|chr12:59763954:59764077:+	0	+
#Deleted in new
chr12	59768118	59768309	ENSG00000118596.11|SLC16A7|pc|chr12:59768118:59768309:+	0	+
#Deleted in new
chr12	59768125	59768223	ENSG00000118596.11|SLC16A7|pc|chr12:59768125:59768223:+	0	+
#Deleted in new
chr12	59768125	59768225	ENSG00000118596.11|SLC16A7|pc|chr12:59768125:59768225:+	0	+
#Deleted in new
chr12	59768125	59768323	ENSG00000118596.11|SLC16A7|pc|chr12:59768125:59768323:+	0	+
#Deleted in new
chr12	59769058	59769332	ENSG00000118596.11|SLC16A7|pc|chr12:59769058:59769332:+	0	+
#Deleted in new
chr12	60092863	60092909	ENSG00000257294.2|AC080011.1|lncRNA|chr12:60092863:60092909:+	0	+
#Deleted in new
chr1	26019883	26019944	ENSG00000158008.9|EXTL1|pc|chr1:26019883:26019944:+	0	+
#Partially deleted in new
chr1	26037251	26039305	ENSG00000158014.14|SLC30A2|pc|chr1:26037251:26039305:-	0	-
#Partially deleted in new
chr1	26038021	26039305	ENSG00000158014.14|SLC30A2|pc|chr1:26038021:26039305:-	0	-
#Partially deleted in new
chr1	26046664	26047149	ENSG00000284309.1|AL391650.2|lncRNA|chr1:26046664:26047149:+	0	+
#Deleted in new
chr1	26048643	26049099	ENSG00000284309.1|AL391650.2|lncRNA|chr1:26048643:26049099:+	0	+
#Deleted in new
chr12	6155034	6155356	ENSG00000255775.1|AC005845.1|lncRNA|chr12:6155034:6155356:-	0	-
#Deleted in new
chr12	6157558	6157666	ENSG00000255775.1|AC005845.1|lncRNA|chr12:6157558:6157666:-	0	-
#Deleted in new
chr12	6160496	6160719	ENSG00000255775.1|AC005845.1|lncRNA|chr12:6160496:6160719:-	0	-
#Deleted in new
chr12	61878077	61878140	ENSG00000198673.10|FAM19A2|pc|chr12:61878077:61878140:-	0	-
#Partially deleted in new
chr12	6205958	6206084	ENSG00000010278.12|CD9|pc|chr12:6205958:6206084:+	0	+
#Deleted in new
chr12	62070421	62070562	ENSG00000198673.10|FAM19A2|pc|chr12:62070421:62070562:-	0	-
#Deleted in new
chr12	62145580	62145643	ENSG00000257880.1|AC078789.1|lncRNA|chr12:62145580:62145643:-	0	-
#Partially deleted in new
chr12	62206888	62207250	ENSG00000198673.10|FAM19A2|pc|chr12:62206888:62207250:-	0	-
#Deleted in new
chr12	62242430	62242570	ENSG00000198673.10|FAM19A2|pc|chr12:62242430:62242570:-	0	-
#Deleted in new
chr12	62242432	62242570	ENSG00000198673.10|FAM19A2|pc|chr12:62242432:62242570:-	0	-
#Partially deleted in new
chr12	62252099	62253401	ENSG00000198673.10|FAM19A2|pc|chr12:62252099:62253401:-	0	-
#Deleted in new
chr12	62274139	62274301	ENSG00000198673.10|FAM19A2|pc|chr12:62274139:62274301:-	0	-
#Deleted in new
chr12	62277524	62277629	ENSG00000198673.10|FAM19A2|pc|chr12:62277524:62277629:-	0	-
#Deleted in new
chr12	62278627	62278714	ENSG00000135655.15|USP15|pc|chr12:62278627:62278714:+	0	+
#Deleted in new
chr12	62279105	62279150	ENSG00000198673.10|FAM19A2|pc|chr12:62279105:62279150:-	0	-
#Deleted in new
chr12	62312285	62312309	ENSG00000135655.15|USP15|pc|chr12:62312285:62312309:+	0	+
#Deleted in new
chr12	62328292	62328405	ENSG00000135655.15|USP15|pc|chr12:62328292:62328405:+	0	+
#Deleted in new
chr12	62374389	62374535	ENSG00000135655.15|USP15|pc|chr12:62374389:62374535:+	0	+
#Deleted in new
chr12	62470700	62470778	ENSG00000061987.15|MON2|pc|chr12:62470700:62470778:+	0	+
#Deleted in new
chr12	62482348	62483032	ENSG00000257568.1|AC079035.1|lncRNA|chr12:62482348:62483032:-	0	-
#Deleted in new
chr12	62490035	62490116	ENSG00000061987.15|MON2|pc|chr12:62490035:62490116:+	0	+
#Partially deleted in new
chr12	62508285	62509145	ENSG00000061987.15|MON2|pc|chr12:62508285:62509145:+	0	+
#Deleted in new
chr12	62588855	62588916	ENSG00000061987.15|MON2|pc|chr12:62588855:62588916:+	0	+
#Deleted in new
chr1	26269289	26269364	ENSG00000130695.14|CEP85|pc|chr1:26269289:26269364:+	0	+
#Deleted in new
chr12	6319459	6319673	ENSG00000008323.15|PLEKHG6|pc|chr12:6319459:6319673:+	0	+
#Deleted in new
chr12	6319570	6319595	ENSG00000008323.15|PLEKHG6|pc|chr12:6319570:6319595:+	0	+
#Deleted in new
chr12	6331239	6331993	ENSG00000067182.7|TNFRSF1A|pc|chr12:6331239:6331993:-	0	-
#Deleted in new
chr12	6331871	6331993	ENSG00000067182.7|TNFRSF1A|pc|chr12:6331871:6331993:-	0	-
#Deleted in new
chr12	63359875	63360037	ENSG00000258117.2|AC026116.1|lncRNA|chr12:63359875:63360037:-	0	-
#Deleted in new
chr12	6349829	6350024	ENSG00000111319.12|SCNN1A|pc|chr12:6349829:6350024:-	0	-
#Deleted in new
chr12	6353716	6353887	ENSG00000111319.12|SCNN1A|pc|chr12:6353716:6353887:-	0	-
#Deleted in new
chr12	6356192	6356394	ENSG00000111319.12|SCNN1A|pc|chr12:6356192:6356394:-	0	-
#Partially deleted in new
chr1	2635975	2641895	ENSG00000215912.12|TTC34|pc|chr1:2635975:2641895:-	0	-
#Deleted in new
chr12	63623787	63623824	ENSG00000249753.2|AC084357.2|lncRNA|chr12:63623787:63623824:-	0	-
#Deleted in new
chr1	2636355	2636620	ENSG00000237058.1|AL831784.1|lncRNA|chr1:2636355:2636620:+	0	+
#Deleted in new
chr12	63668757	63668849	ENSG00000177990.11|DPY19L2|pc|chr12:63668757:63668849:-	0	-
#Deleted in new
chr12	63668757	63668939	ENSG00000177990.11|DPY19L2|pc|chr12:63668757:63668939:-	0	-
#Deleted in new
chr1	26372463	26372744	ENSG00000176083.17|ZNF683|pc|chr1:26372463:26372744:-	0	-
#Deleted in new
chr1	26372534	26372700	ENSG00000176083.17|ZNF683|pc|chr1:26372534:26372700:-	0	-
#Deleted in new
chr1	26372668	26372735	ENSG00000176083.17|ZNF683|pc|chr1:26372668:26372735:-	0	-
#Deleted in new
chr1	26372668	26372775	ENSG00000176083.17|ZNF683|pc|chr1:26372668:26372775:-	0	-
#Deleted in new
chr1	26373262	26373360	ENSG00000176083.17|ZNF683|pc|chr1:26373262:26373360:-	0	-
#Deleted in new
chr1	26374277	26374452	ENSG00000176083.17|ZNF683|pc|chr1:26374277:26374452:-	0	-
#Deleted in new
chr1	26374277	26374522	ENSG00000176083.17|ZNF683|pc|chr1:26374277:26374522:-	0	-
#Deleted in new
chr12	63782540	63782704	ENSG00000118600.11|TMEM5|pc|chr12:63782540:63782704:+	0	+
#Deleted in new
chr12	63790318	63790553	ENSG00000118600.11|TMEM5|pc|chr12:63790318:63790553:+	0	+
#Deleted in new
chr12	63795480	63795718	ENSG00000249753.2|AC084357.2|lncRNA|chr12:63795480:63795718:-	0	-
#Partially deleted in new
chr12	63804950	63809481	ENSG00000118600.11|TMEM5|pc|chr12:63804950:63809481:+	0	+
#Deleted in new
chr12	63812206	63812307	ENSG00000255850.1|TMEM5-AS1|lncRNA|chr12:63812206:63812307:-	0	-
#Deleted in new
chr12	63816200	63816338	ENSG00000255850.1|TMEM5-AS1|lncRNA|chr12:63816200:63816338:-	0	-
#Deleted in new
chr12	63878786	63879033	ENSG00000256571.1|AC079866.2|lncRNA|chr12:63878786:63879033:+	0	+
#Deleted in new
chr12	6393904	6393965	ENSG00000256433.2|AC005840.3|lncRNA|chr12:6393904:6393965:+	0	+
#Deleted in new
chr12	6394228	6394328	ENSG00000256433.2|AC005840.3|lncRNA|chr12:6394228:6394328:+	0	+
#Deleted in new
chr12	6394506	6396148	ENSG00000256433.2|AC005840.3|lncRNA|chr12:6394506:6396148:+	0	+
#Partially deleted in new
chr12	64186315	64187652	ENSG00000174206.12|C12orf66|pc|chr12:64186315:64187652:-	0	-
#Duplicated in new
chr12	64266436	64267288	ENSG00000185306.12|C12orf56|pc|chr12:64266436:64267288:-	0	-
#Deleted in new
chr12	642673	642738	ENSG00000177406.4|AC021054.1|lncRNA|chr12:642673:642738:+	0	+
#Deleted in new
chr12	64293280	64293383	ENSG00000185306.12|C12orf56|pc|chr12:64293280:64293383:-	0	-
#Deleted in new
chr12	642980	643717	ENSG00000177406.4|AC021054.1|lncRNA|chr12:642980:643717:+	0	+
#Deleted in new
chr12	643510	643636	ENSG00000171840.11|NINJ2|pc|chr12:643510:643636:-	0	-
#Deleted in new
chr12	643510	643665	ENSG00000171840.11|NINJ2|pc|chr12:643510:643665:-	0	-
#Deleted in new
chr12	643510	643685	ENSG00000171840.11|NINJ2|pc|chr12:643510:643685:-	0	-
#Partially deleted in new
chr12	6439000	6439676	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6439000:6439676:-	0	-
#Deleted in new
chr12	6439160	6439676	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6439160:6439676:-	0	-
#Deleted in new
chr12	6439164	6439676	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6439164:6439676:-	0	-
#Deleted in new
chr12	6439238	6439676	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6439238:6439676:-	0	-
#Deleted in new
chr12	643958	644102	ENSG00000177406.4|AC021054.1|lncRNA|chr12:643958:644102:+	0	+
#Deleted in new
chr12	6446960	6447087	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6446960:6447087:-	0	-
#Deleted in new
chr12	6446960	6447773	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6446960:6447773:-	0	-
#Partially deleted in new
chr1	26447558	26448176	ENSG00000117682.16|DHDDS|pc|chr1:26447558:26448176:+	0	+
#Deleted in new
chr12	6447615	6448150	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6447615:6448150:-	0	-
#Deleted in new
chr12	6447772	6448150	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6447772:6448150:-	0	-
#Deleted in new
chr12	6447829	6448150	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6447829:6448150:-	0	-
#Deleted in new
chr12	6447989	6448150	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6447989:6448150:-	0	-
#Deleted in new
chr12	6448036	6448150	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6448036:6448150:-	0	-
#Deleted in new
chr12	6448639	6448737	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6448639:6448737:-	0	-
#Deleted in new
chr12	6448639	6448757	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6448639:6448757:-	0	-
#Deleted in new
chr12	6448639	6448785	ENSG00000215039.6|CD27-AS1|lncRNA|chr12:6448639:6448785:-	0	-
#Deleted in new
chr12	64507000	64507329	ENSG00000153179.12|RASSF3|pc|chr12:64507000:64507329:+	0	+
#Deleted in new
chr12	64507165	64507475	ENSG00000256199.1|AC078962.2|lncRNA|chr12:64507165:64507475:-	0	-
#Deleted in new
chr12	64515506	64515601	ENSG00000256199.1|AC078962.2|lncRNA|chr12:64515506:64515601:-	0	-
#Deleted in new
chr1	26462755	26462870	ENSG00000225891.1|AL513365.2|lncRNA|chr1:26462755:26462870:-	0	-
#Deleted in new
chr12	64628343	64628541	ENSG00000225195.2|AC078962.1|lncRNA|chr12:64628343:64628541:+	0	+
#Deleted in new
chr12	64629893	64629976	ENSG00000225195.2|AC078962.1|lncRNA|chr12:64629893:64629976:+	0	+
#Deleted in new
chr1	26463375	26463433	ENSG00000225891.1|AL513365.2|lncRNA|chr1:26463375:26463433:-	0	-
#Deleted in new
chr12	64654059	64654277	ENSG00000256314.1|AC078962.3|lncRNA|chr12:64654059:64654277:-	0	-
#Deleted in new
chr12	64654755	64655019	ENSG00000256314.1|AC078962.3|lncRNA|chr12:64654755:64655019:-	0	-
#Deleted in new
chr1	26466203	26466324	ENSG00000225891.1|AL513365.2|lncRNA|chr1:26466203:26466324:-	0	-
#Partially deleted in new
chr12	6466536	6467135	ENSG00000276718.1|AC005840.5|lncRNA|chr12:6466536:6467135:+	0	+
#Deleted in new
chr1	26467047	26467282	ENSG00000225891.1|AL513365.2|lncRNA|chr1:26467047:26467282:-	0	-
#Deleted in new
chr1	26467292	26467527	ENSG00000117682.16|DHDDS|pc|chr1:26467292:26467527:+	0	+
#Partially deleted in new
chr12	64709457	64710513	ENSG00000280181.1|AC025262.2|lncRNA|chr12:64709457:64710513:+	0	+
#Partially deleted in new
chr12	64759520	64759649	ENSG00000215159.3|AC025262.1|lncRNA|chr12:64759520:64759649:+	0	+
#Deleted in new
chr12	64768360	64768572	ENSG00000215159.3|AC025262.1|lncRNA|chr12:64768360:64768572:+	0	+
#Deleted in new
chr12	64779070	64779318	ENSG00000215159.3|AC025262.1|lncRNA|chr12:64779070:64779318:+	0	+
#Deleted in new
chr12	64818455	64818770	ENSG00000111490.12|TBC1D30|pc|chr12:64818455:64818770:+	0	+
#Deleted in new
chr12	64885193	64885300	ENSG00000255693.1|LINC02389|lncRNA|chr12:64885193:64885300:+	0	+
#Deleted in new
chr12	64920844	64921070	ENSG00000248995.2|LINC02231|lncRNA|chr12:64920844:64921070:-	0	-
#Partially deleted in new
chr12	6493458	6493840	ENSG00000111639.7|MRPL51|pc|chr12:6493458:6493840:-	0	-
#Deleted in new
chr12	6493673	6493718	ENSG00000111639.7|MRPL51|pc|chr12:6493673:6493718:-	0	-
#Deleted in new
chr12	64982407	64982524	ENSG00000248995.2|LINC02231|lncRNA|chr12:64982407:64982524:-	0	-
#Deleted in new
chr12	65054101	65054124	ENSG00000198671.3|AC135895.1|lncRNA|chr12:65054101:65054124:+	0	+
#Partially deleted in new
chr12	65245299	65245774	ENSG00000174106.2|LEMD3|pc|chr12:65245299:65245774:+	0	+
#Deleted in new
chr12	6536604	6536607	ENSG00000111640.14|GAPDH|pc|chr12:6536604:6536607:+	0	+
#Partially deleted in new
chr12	6538374	6538622	ENSG00000010295.19|IFFO1|pc|chr12:6538374:6538622:-	0	-
#Deleted in new
chr12	6543503	6543862	ENSG00000245667.2|AC006064.1|lncRNA|chr12:6543503:6543862:+	0	+
#Deleted in new
chr12	65488003	65488095	ENSG00000174099.10|MSRB3|pc|chr12:65488003:65488095:+	0	+
#Deleted in new
chr12	65488003	65488244	ENSG00000174099.10|MSRB3|pc|chr12:65488003:65488244:+	0	+
#Deleted in new
chr1	26552817	26552896	ENSG00000117676.13|RPS6KA1|pc|chr1:26552817:26552896:+	0	+
#Deleted in new
chr12	65558133	65558814	ENSG00000250748.6|AC025419.1|lncRNA|chr12:65558133:65558814:-	0	-
#Deleted in new
chr12	65558401	65558689	ENSG00000250748.6|AC025419.1|lncRNA|chr12:65558401:65558689:-	0	-
#Deleted in new
chr12	65558427	65558814	ENSG00000250748.6|AC025419.1|lncRNA|chr12:65558427:65558814:-	0	-
#Deleted in new
chr12	65558430	65558814	ENSG00000250748.6|AC025419.1|lncRNA|chr12:65558430:65558814:-	0	-
#Deleted in new
chr12	65569990	65570048	ENSG00000250748.6|AC025419.1|lncRNA|chr12:65569990:65570048:-	0	-
#Deleted in new
chr12	65569990	65570068	ENSG00000250748.6|AC025419.1|lncRNA|chr12:65569990:65570068:-	0	-
#Deleted in new
chr12	6558015	6558137	ENSG00000111641.11|NOP2|pc|chr12:6558015:6558137:-	0	-
#Deleted in new
chr12	6558027	6558137	ENSG00000111641.11|NOP2|pc|chr12:6558027:6558137:-	0	-
#Deleted in new
chr12	65587342	65587452	ENSG00000250748.6|AC025419.1|lncRNA|chr12:65587342:65587452:-	0	-
#Partially deleted in new
chr12	65608470	65609293	ENSG00000250748.6|AC025419.1|lncRNA|chr12:65608470:65609293:-	0	-
#Deleted in new
chr12	65626611	65626685	ENSG00000250748.6|AC025419.1|lncRNA|chr12:65626611:65626685:-	0	-
#Deleted in new
chr12	65851339	65851652	ENSG00000197301.7|AC090673.1|lncRNA|chr12:65851339:65851652:-	0	-
#Deleted in new
chr12	65942637	65942693	ENSG00000256083.1|AC090673.2|lncRNA|chr12:65942637:65942693:-	0	-
#Partially deleted in new
chr12	66130455	66130702	ENSG00000139233.6|LLPH|pc|chr12:66130455:66130702:-	0	-
#Deleted in new
chr12	66134051	66134449	ENSG00000239335.4|LLPH-AS1|lncRNA|chr12:66134051:66134449:+	0	+
#Partially deleted in new
chr12	66135845	66138166	ENSG00000155957.17|TMBIM4|pc|chr12:66135845:66138166:-	0	-
#Deleted in new
chr12	66144748	66144766	ENSG00000155957.17|TMBIM4|pc|chr12:66144748:66144766:-	0	-
#Deleted in new
chr12	66145354	66145361	ENSG00000155957.17|TMBIM4|pc|chr12:66145354:66145361:-	0	-
#Deleted in new
chr12	66251744	66251913	ENSG00000256072.1|AC078889.1|lncRNA|chr12:66251744:66251913:-	0	-
#Deleted in new
chr12	66252308	66252383	ENSG00000256072.1|AC078889.1|lncRNA|chr12:66252308:66252383:-	0	-
#Partially deleted in new
chr12	66254742	66254845	ENSG00000256072.1|AC078889.1|lncRNA|chr12:66254742:66254845:-	0	-
#Deleted in new
chr12	66257258	66257434	ENSG00000256072.1|AC078889.1|lncRNA|chr12:66257258:66257434:-	0	-
#Partially deleted in new
chr12	66338000	66347645	ENSG00000127311.9|HELB|pc|chr12:66338000:66347645:+	0	+
#Deleted in new
chr12	66343455	66343643	ENSG00000127311.9|HELB|pc|chr12:66343455:66343643:+	0	+
#Deleted in new
chr12	66407402	66407431	ENSG00000155974.11|GRIP1|pc|chr12:66407402:66407431:-	0	-
#Deleted in new
chr12	6657804	6657852	ENSG00000111653.19|ING4|pc|chr12:6657804:6657852:-	0	-
#Deleted in new
chr12	66626618	66626812	ENSG00000155974.11|GRIP1|pc|chr12:66626618:66626812:-	0	-
#Deleted in new
chr12	66630224	66630336	ENSG00000155974.11|GRIP1|pc|chr12:66630224:66630336:-	0	-
#Deleted in new
chr12	67065017	67065278	ENSG00000279310.1|AC073530.2|lncRNA|chr12:67065017:67065278:-	0	-
#Partially deleted in new
chr12	67086777	67086948	ENSG00000257083.5|AC073530.1|lncRNA|chr12:67086777:67086948:-	0	-
#Partially deleted in new
chr12	6723232	6723687	ENSG00000270068.1|AC125494.3|lncRNA|chr12:6723232:6723687:+	0	+
#Deleted in new
chr12	6742984	6743641	ENSG00000269892.1|AC125494.2|lncRNA|chr12:6742984:6743641:+	0	+
#Deleted in new
chr12	6751124	6751156	ENSG00000089693.10|MLF2|pc|chr12:6751124:6751156:-	0	-
#Deleted in new
chr12	67542126	67542534	ENSG00000203585.3|LINC02408|lncRNA|chr12:67542126:67542534:+	0	+
#Deleted in new
chr12	67549122	67549163	ENSG00000203585.3|LINC02408|lncRNA|chr12:67549122:67549163:+	0	+
#Deleted in new
chr12	67549122	67549164	ENSG00000203585.3|LINC02408|lncRNA|chr12:67549122:67549164:+	0	+
#Partially deleted in new
chr12	67565513	67567126	ENSG00000203585.3|LINC02408|lncRNA|chr12:67565513:67567126:+	0	+
#Deleted in new
chr1	26764264	26765095	ENSG00000117713.18|ARID1A|pc|chr1:26764264:26765095:+	0	+
#Deleted in new
chr1	26764794	26765080	ENSG00000117713.18|ARID1A|pc|chr1:26764794:26765080:+	0	+
#Deleted in new
chr1	26765385	26765878	ENSG00000117713.18|ARID1A|pc|chr1:26765385:26765878:+	0	+
#Partially deleted in new
chr12	67670848	67670919	ENSG00000235872.2|AC078777.1|lncRNA|chr12:67670848:67670919:-	0	-
#Deleted in new
chr12	67715321	67716203	ENSG00000255970.1|LINC02421|lncRNA|chr12:67715321:67716203:-	0	-
#Deleted in new
chr12	67718342	67718541	ENSG00000255970.1|LINC02421|lncRNA|chr12:67718342:67718541:-	0	-
#Deleted in new
chr12	67729395	67729475	ENSG00000255970.1|LINC02421|lncRNA|chr12:67729395:67729475:-	0	-
#Deleted in new
chr12	67753700	67753817	ENSG00000279505.1|AC022513.1|lncRNA|chr12:67753700:67753817:+	0	+
#Deleted in new
chr1	26775816	26775956	ENSG00000117713.18|ARID1A|pc|chr1:26775816:26775956:+	0	+
#Deleted in new
chr12	6786857	6787005	ENSG00000010610.9|CD4|pc|chr12:6786857:6787005:+	0	+
#Deleted in new
chr12	6798879	6799074	ENSG00000010610.9|CD4|pc|chr12:6798879:6799074:+	0	+
#Deleted in new
chr12	6799324	6799364	ENSG00000010610.9|CD4|pc|chr12:6799324:6799364:+	0	+
#Partially deleted in new
chr12	6799537	6799623	ENSG00000010610.9|CD4|pc|chr12:6799537:6799623:+	0	+
#Deleted in new
chr12	67995940	67996073	ENSG00000255733.5|IFNG-AS1|lncRNA|chr12:67995940:67996073:+	0	+
#Deleted in new
chr12	68006089	68006146	ENSG00000255733.5|IFNG-AS1|lncRNA|chr12:68006089:68006146:+	0	+
#Deleted in new
chr12	68013530	68013648	ENSG00000255733.5|IFNG-AS1|lncRNA|chr12:68013530:68013648:+	0	+
#Deleted in new
chr12	68026650	68026708	ENSG00000255733.5|IFNG-AS1|lncRNA|chr12:68026650:68026708:+	0	+
#Deleted in new
chr12	6813551	6813602	ENSG00000010610.9|CD4|pc|chr12:6813551:6813602:+	0	+
#Deleted in new
chr12	681751	681895	ENSG00000256672.1|LINC02455|lncRNA|chr12:681751:681895:-	0	-
#Deleted in new
chr12	68234528	68234686	ENSG00000255733.5|IFNG-AS1|lncRNA|chr12:68234528:68234686:+	0	+
#Partially deleted in new
chr12	68272442	68272532	ENSG00000111554.14|MDM1|pc|chr12:68272442:68272532:-	0	-
#Deleted in new
chr12	68280647	68280755	ENSG00000111554.14|MDM1|pc|chr12:68280647:68280755:-	0	-
#Deleted in new
chr1	26832003	26832053	ENSG00000204160.11|ZDHHC18|pc|chr1:26832003:26832053:+	0	+
#Deleted in new
chr1	26832019	26832072	ENSG00000204160.11|ZDHHC18|pc|chr1:26832019:26832072:+	0	+
#Deleted in new
chr12	68344663	68344903	ENSG00000256273.1|AC022511.1|lncRNA|chr12:68344663:68344903:+	0	+
#Deleted in new
chr12	68433283	68433371	ENSG00000251301.6|LINC02384|lncRNA|chr12:68433283:68433371:-	0	-
#Deleted in new
chr12	68441887	68442141	ENSG00000251301.6|LINC02384|lncRNA|chr12:68441887:68442141:-	0	-
#Deleted in new
chr12	68442063	68442141	ENSG00000251301.6|LINC02384|lncRNA|chr12:68442063:68442141:-	0	-
#Deleted in new
chr12	68442063	68442216	ENSG00000251301.6|LINC02384|lncRNA|chr12:68442063:68442216:-	0	-
#Partially deleted in new
chr12	6848060	6848367	ENSG00000111665.11|CDCA3|pc|chr12:6848060:6848367:-	0	-
#Partially deleted in new
chr12	68624507	68624873	ENSG00000127314.17|RAP1B|pc|chr12:68624507:68624873:+	0	+
#Deleted in new
chr12	68624670	68624753	ENSG00000127314.17|RAP1B|pc|chr12:68624670:68624753:+	0	+
#Partially deleted in new
chr12	68624670	68624873	ENSG00000127314.17|RAP1B|pc|chr12:68624670:68624873:+	0	+
#Partially deleted in new
chr12	68624674	68624873	ENSG00000127314.17|RAP1B|pc|chr12:68624674:68624873:+	0	+
#Deleted in new
chr12	68641033	68641153	ENSG00000127314.17|RAP1B|pc|chr12:68641033:68641153:+	0	+
#Deleted in new
chr12	68641037	68641153	ENSG00000127314.17|RAP1B|pc|chr12:68641037:68641153:+	0	+
#Deleted in new
chr12	68641056	68641153	ENSG00000127314.17|RAP1B|pc|chr12:68641056:68641153:+	0	+
#Deleted in new
chr12	68647992	68648095	ENSG00000127314.17|RAP1B|pc|chr12:68647992:68648095:+	0	+
#Duplicated in new
chr12	68650243	68650468	ENSG00000127314.17|RAP1B|pc|chr12:68650243:68650468:+	0	+
#Partially deleted in new
chr12	68657100	68657713	ENSG00000127314.17|RAP1B|pc|chr12:68657100:68657713:+	0	+
#Partially deleted in new
chr12	68713729	68714378	ENSG00000111581.9|NUP107|pc|chr12:68713729:68714378:+	0	+
#Deleted in new
chr12	68739723	68740218	ENSG00000111581.9|NUP107|pc|chr12:68739723:68740218:+	0	+
#Deleted in new
chr12	6875763	6875914	ENSG00000111671.9|SPSB2|pc|chr12:6875763:6875914:-	0	-
#Deleted in new
chr12	68760039	68760196	ENSG00000175782.9|SLC35E3|pc|chr12:68760039:68760196:+	0	+
#Deleted in new
chr1	26876132	26876310	ENSG00000226698.1|AL034380.1|lncRNA|chr1:26876132:26876310:+	0	+
#Split in new
chr12	68764703	68781467	ENSG00000175782.9|SLC35E3|pc|chr12:68764703:68781467:+	0	+
#Deleted in new
chr12	68766621	68767245	ENSG00000175782.9|SLC35E3|pc|chr12:68766621:68767245:+	0	+
#Deleted in new
chr12	6877498	6877600	ENSG00000111671.9|SPSB2|pc|chr12:6877498:6877600:-	0	-
#Deleted in new
chr1	26878117	26878245	ENSG00000226698.1|AL034380.1|lncRNA|chr1:26878117:26878245:+	0	+
#Deleted in new
chr12	68792411	68793964	ENSG00000175782.9|SLC35E3|pc|chr12:68792411:68793964:+	0	+
#Deleted in new
chr12	68793287	68793728	ENSG00000175782.9|SLC35E3|pc|chr12:68793287:68793728:+	0	+
#Partially deleted in new
chr12	68814602	68814689	ENSG00000135679.22|MDM2|pc|chr12:68814602:68814689:+	0	+
#Partially deleted in new
chr12	68815627	68815720	ENSG00000135679.22|MDM2|pc|chr12:68815627:68815720:+	0	+
#Deleted in new
chr12	6882189	6882287	ENSG00000111671.9|SPSB2|pc|chr12:6882189:6882287:-	0	-
#Deleted in new
chr12	6882195	6882327	ENSG00000010626.14|LRRC23|pc|chr12:6882195:6882327:+	0	+
#Deleted in new
chr12	68828117	68828403	ENSG00000256325.1|AC025423.1|lncRNA|chr12:68828117:68828403:+	0	+
#Deleted in new
chr12	68828465	68828553	ENSG00000256325.1|AC025423.1|lncRNA|chr12:68828465:68828553:+	0	+
#Split in new
chr12	68839273	68850686	ENSG00000135679.22|MDM2|pc|chr12:68839273:68850686:+	0	+
#Partially deleted in new
chr12	68841287	68841688	ENSG00000257181.1|AC025423.4|lncRNA|chr12:68841287:68841688:-	0	-
#Partially deleted in new
chr12	68843065	68843264	ENSG00000135679.22|MDM2|pc|chr12:68843065:68843264:+	0	+
#Deleted in new
chr12	68843688	68843832	ENSG00000135679.22|MDM2|pc|chr12:68843688:68843832:+	0	+
#Deleted in new
chr12	68843740	68844190	ENSG00000135679.22|MDM2|pc|chr12:68843740:68844190:+	0	+
#Deleted in new
chr12	68843763	68844181	ENSG00000135679.22|MDM2|pc|chr12:68843763:68844181:+	0	+
#Deleted in new
chr12	68843933	68844195	ENSG00000135679.22|MDM2|pc|chr12:68843933:68844195:+	0	+
#Partially deleted in new
chr12	68851174	68856679	ENSG00000135678.11|CPM|pc|chr12:68851174:68856679:-	0	-
#Partially deleted in new
chr12	68851179	68856679	ENSG00000135678.11|CPM|pc|chr12:68851179:68856679:-	0	-
#Deleted in new
chr1	26886476	26886525	ENSG00000142751.14|GPN2|pc|chr1:26886476:26886525:-	0	-
#Deleted in new
chr12	6889305	6889358	ENSG00000111671.9|SPSB2|pc|chr12:6889305:6889358:-	0	-
#Deleted in new
chr12	68963168	68963269	ENSG00000135678.11|CPM|pc|chr12:68963168:68963269:-	0	-
#Deleted in new
chr12	68963168	68963300	ENSG00000135678.11|CPM|pc|chr12:68963168:68963300:-	0	-
#Deleted in new
chr12	68971264	68971570	ENSG00000135678.11|CPM|pc|chr12:68971264:68971570:-	0	-
#Deleted in new
chr12	6899751	6900212	ENSG00000275703.1|U47924.3|lncRNA|chr12:6899751:6900212:+	0	+
#Deleted in new
chr1	26902281	26902366	ENSG00000090273.13|NUDC|pc|chr1:26902281:26902366:+	0	+
#Deleted in new
chr12	6913744	6913842	ENSG00000111674.8|ENO2|pc|chr12:6913744:6913842:+	0	+
#Deleted in new
chr12	69213013	69213084	ENSG00000258140.1|AC127894.1|lncRNA|chr12:69213013:69213084:+	0	+
#Deleted in new
chr12	69222493	69222611	ENSG00000258140.1|AC127894.1|lncRNA|chr12:69222493:69222611:+	0	+
#Deleted in new
chr12	69223876	69224242	ENSG00000258140.1|AC127894.1|lncRNA|chr12:69223876:69224242:+	0	+
#Deleted in new
chr12	69252085	69252216	ENSG00000111605.16|CPSF6|pc|chr12:69252085:69252216:+	0	+
#Deleted in new
chr12	69326573	69331882	ENSG00000274979.1|AC020656.2|lncRNA|chr12:69326573:69331882:-	0	-
#Partially deleted in new
chr12	69353492	69353608	ENSG00000257764.2|AC020656.1|lncRNA|chr12:69353492:69353608:-	0	-
#Deleted in new
chr12	69361316	69361433	ENSG00000127337.6|YEATS4|pc|chr12:69361316:69361433:+	0	+
#Deleted in new
chr12	69364176	69364299	ENSG00000127337.6|YEATS4|pc|chr12:69364176:69364299:+	0	+
#Deleted in new
chr12	69449469	69449688	ENSG00000257507.1|LINC02373|lncRNA|chr12:69449469:69449688:+	0	+
#Deleted in new
chr12	69480298	69480359	ENSG00000166225.8|FRS2|pc|chr12:69480298:69480359:+	0	+
#Deleted in new
chr12	69486201	69486297	ENSG00000166225.8|FRS2|pc|chr12:69486201:69486297:+	0	+
#Deleted in new
chr12	69491537	69491651	ENSG00000166225.8|FRS2|pc|chr12:69491537:69491651:+	0	+
#Deleted in new
chr12	69537915	69537983	ENSG00000166225.8|FRS2|pc|chr12:69537915:69537983:+	0	+
#Deleted in new
chr12	69557788	69557856	ENSG00000166225.8|FRS2|pc|chr12:69557788:69557856:+	0	+
#Deleted in new
chr12	69557799	69557856	ENSG00000166225.8|FRS2|pc|chr12:69557799:69557856:+	0	+
#Deleted in new
chr12	69643359	69643787	ENSG00000127325.18|BEST3|pc|chr12:69643359:69643787:-	0	-
#Deleted in new
chr12	69643553	69643787	ENSG00000127325.18|BEST3|pc|chr12:69643553:69643787:-	0	-
#Deleted in new
chr12	69687258	69687459	ENSG00000127325.18|BEST3|pc|chr12:69687258:69687459:-	0	-
#Deleted in new
chr12	69722321	69722571	ENSG00000247131.5|AC025263.1|lncRNA|chr12:69722321:69722571:-	0	-
#Deleted in new
chr12	69730572	69730696	ENSG00000247131.5|AC025263.1|lncRNA|chr12:69730572:69730696:-	0	-
#Deleted in new
chr12	69778949	69779181	ENSG00000127328.21|RAB3IP|pc|chr12:69778949:69779181:+	0	+
#Deleted in new
chr12	69778966	69779096	ENSG00000127328.21|RAB3IP|pc|chr12:69778966:69779096:+	0	+
#Deleted in new
chr12	69796572	69796643	ENSG00000127328.21|RAB3IP|pc|chr12:69796572:69796643:+	0	+
#Partially deleted in new
chr12	69815363	69823204	ENSG00000127328.21|RAB3IP|pc|chr12:69815363:69823204:+	0	+
#Deleted in new
chr12	6983001	6983206	ENSG00000268439.5|EMG1|pc|chr12:6983001:6983206:+	0	+
#Deleted in new
chr12	69904032	69904419	ENSG00000257815.5|LINC01481|lncRNA|chr12:69904032:69904419:-	0	-
#Deleted in new
chr12	6997224	6997342	ENSG00000182326.14|C1S|pc|chr12:6997224:6997342:+	0	+
#Deleted in new
chr12	6997224	6997428	ENSG00000268439.5|EMG1|pc|chr12:6997224:6997428:+	0	+
#Deleted in new
chr12	7001427	7001486	ENSG00000111684.10|LPCAT3|pc|chr12:7001427:7001486:-	0	-
#Deleted in new
chr12	70180337	70180538	ENSG00000257139.1|AC084032.1|lncRNA|chr12:70180337:70180538:+	0	+
#Deleted in new
chr12	70199732	70199819	ENSG00000257139.1|AC084032.1|lncRNA|chr12:70199732:70199819:+	0	+
#Deleted in new
chr12	70201714	70202004	ENSG00000257139.1|AC084032.1|lncRNA|chr12:70201714:70202004:+	0	+
#Deleted in new
chr12	70219131	70219597	ENSG00000257613.1|LINC01481|lncRNA|chr12:70219131:70219597:-	0	-
#Deleted in new
chr12	70224992	70225032	ENSG00000257815.5|LINC01481|lncRNA|chr12:70224992:70225032:-	0	-
#Deleted in new
chr12	70225210	70225390	ENSG00000257815.5|LINC01481|lncRNA|chr12:70225210:70225390:-	0	-
#Deleted in new
chr12	70285399	70285586	ENSG00000111596.11|CNOT2|pc|chr12:70285399:70285586:+	0	+
#Partially deleted in new
chr12	70290726	70290803	ENSG00000111596.11|CNOT2|pc|chr12:70290726:70290803:+	0	+
#Partially deleted in new
chr12	70297758	70297879	ENSG00000111596.11|CNOT2|pc|chr12:70297758:70297879:+	0	+
#Deleted in new
chr12	70301704	70301830	ENSG00000111596.11|CNOT2|pc|chr12:70301704:70301830:+	0	+
#Deleted in new
chr12	70301704	70301865	ENSG00000111596.11|CNOT2|pc|chr12:70301704:70301865:+	0	+
#Deleted in new
chr12	70347593	70348045	ENSG00000111596.11|CNOT2|pc|chr12:70347593:70348045:+	0	+
#Deleted in new
chr12	70422706	70422849	ENSG00000135643.4|KCNMB4|pc|chr12:70422706:70422849:+	0	+
#Deleted in new
chr12	7042960	7043128	ENSG00000182326.14|C1S|pc|chr12:7042960:7043128:+	0	+
#Deleted in new
chr12	70468079	70468327	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70468079:70468327:+	0	+
#Deleted in new
chr12	70468084	70468327	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70468084:70468327:+	0	+
#Deleted in new
chr12	70468109	70468327	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70468109:70468327:+	0	+
#Deleted in new
chr12	70468122	70468327	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70468122:70468327:+	0	+
#Deleted in new
chr12	70468194	70468327	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70468194:70468327:+	0	+
#Deleted in new
chr12	70470212	70470308	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70470212:70470308:+	0	+
#Deleted in new
chr12	70507894	70508001	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70507894:70508001:+	0	+
#Deleted in new
chr12	70510211	70510284	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70510211:70510284:+	0	+
#Deleted in new
chr12	70510407	70510577	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70510407:70510577:+	0	+
#Deleted in new
chr12	70511074	70511222	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70511074:70511222:+	0	+
#Deleted in new
chr12	70513184	70513227	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70513184:70513227:+	0	+
#Deleted in new
chr12	70527674	70527738	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70527674:70527738:+	0	+
#Deleted in new
chr12	70527674	70527749	ENSG00000258168.5|AC025569.1|lncRNA|chr12:70527674:70527749:+	0	+
#Deleted in new
chr12	7056040	7056197	ENSG00000182326.14|C1S|pc|chr12:7056040:7056197:+	0	+
#Deleted in new
chr12	70584964	70585295	ENSG00000127329.15|PTPRB|pc|chr12:70584964:70585295:-	0	-
#Split in new
chr12	7061838	7062228	ENSG00000182326.14|C1S|pc|chr12:7061838:7062228:+	0	+
#Deleted in new
chr12	7064068	7064105	ENSG00000182326.14|C1S|pc|chr12:7064068:7064105:+	0	+
#Partially deleted in new
chr12	7098295	7098412	ENSG00000139178.10|C1RL|pc|chr12:7098295:7098412:-	0	-
#Partially deleted in new
chr12	7098296	7098388	ENSG00000139178.10|C1RL|pc|chr12:7098296:7098388:-	0	-
#Deleted in new
chr12	71031976	71032083	ENSG00000257265.1|AC123905.1|lncRNA|chr12:71031976:71032083:-	0	-
#Deleted in new
chr12	71034121	71034248	ENSG00000257454.1|AC025575.1|lncRNA|chr12:71034121:71034248:-	0	-
#Deleted in new
chr12	71047401	71047679	ENSG00000258053.1|AC025575.2|lncRNA|chr12:71047401:71047679:-	0	-
#Deleted in new
chr12	7110063	7110147	ENSG00000205885.7|C1RL-AS1|lncRNA|chr12:7110063:7110147:+	0	+
#Deleted in new
chr12	71104349	71104526	ENSG00000257454.1|AC025575.1|lncRNA|chr12:71104349:71104526:-	0	-
#Partially deleted in new
chr12	7111024	7111606	ENSG00000205885.7|C1RL-AS1|lncRNA|chr12:7111024:7111606:+	0	+
#Deleted in new
chr12	7111370	7111606	ENSG00000205885.7|C1RL-AS1|lncRNA|chr12:7111370:7111606:+	0	+
#Deleted in new
chr12	71118069	71118247	ENSG00000258053.1|AC025575.2|lncRNA|chr12:71118069:71118247:-	0	-
#Deleted in new
chr12	7112006	7112064	ENSG00000205885.7|C1RL-AS1|lncRNA|chr12:7112006:7112064:+	0	+
#Deleted in new
chr12	7115735	7116486	ENSG00000276144.1|AC233309.1|lncRNA|chr12:7115735:7116486:-	0	-
#Deleted in new
chr12	7120505	7120625	ENSG00000205885.7|C1RL-AS1|lncRNA|chr12:7120505:7120625:+	0	+
#Deleted in new
chr12	7120505	7121027	ENSG00000205885.7|C1RL-AS1|lncRNA|chr12:7120505:7121027:+	0	+
#Deleted in new
chr12	7120557	7120625	ENSG00000205885.7|C1RL-AS1|lncRNA|chr12:7120557:7120625:+	0	+
#Partially deleted in new
chr12	7121711	7121851	ENSG00000205885.7|C1RL-AS1|lncRNA|chr12:7121711:7121851:+	0	+
#Partially deleted in new
chr12	7127498	7127712	ENSG00000139194.7|RBP5|pc|chr12:7127498:7127712:-	0	-
#Partially deleted in new
chr12	71277350	71277412	ENSG00000127324.8|TSPAN8|pc|chr12:71277350:71277412:-	0	-
#Partially deleted in new
chr1	27155353	27155404	ENSG00000090020.10|SLC9A1|pc|chr1:27155353:27155404:-	0	-
#Deleted in new
chr12	7166673	7166789	ENSG00000255572.1|AC018653.1|lncRNA|chr12:7166673:7166789:-	0	-
#Deleted in new
chr12	71667520	71667725	ENSG00000133858.15|ZFC3H1|pc|chr12:71667520:71667725:-	0	-
#Deleted in new
chr1	27166770	27166981	ENSG00000090020.10|SLC9A1|pc|chr1:27166770:27166981:-	0	-
#Deleted in new
chr12	71667782	71667910	ENSG00000173451.6|THAP2|pc|chr12:71667782:71667910:+	0	+
#Deleted in new
chr12	71690338	71690430	ENSG00000139291.13|TMEM19|pc|chr12:71690338:71690430:+	0	+
#Deleted in new
chr12	7169784	7169927	ENSG00000255572.1|AC018653.1|lncRNA|chr12:7169784:7169927:-	0	-
#Deleted in new
chr12	71703976	71704056	ENSG00000139291.13|TMEM19|pc|chr12:71703976:71704056:+	0	+
#Deleted in new
chr12	71709170	71709604	ENSG00000257515.1|AC011601.1|lncRNA|chr12:71709170:71709604:-	0	-
#Deleted in new
chr12	71710231	71710374	ENSG00000257515.1|AC011601.1|lncRNA|chr12:71710231:71710374:-	0	-
#Deleted in new
chr12	7174613	7174681	ENSG00000255572.1|AC018653.1|lncRNA|chr12:7174613:7174681:-	0	-
#Deleted in new
chr12	71793854	71793901	ENSG00000257410.1|AC089984.1|lncRNA|chr12:71793854:71793901:-	0	-
#Deleted in new
chr12	71798243	71799627	ENSG00000257410.1|AC089984.1|lncRNA|chr12:71798243:71799627:-	0	-
#Deleted in new
chr12	71854562	71854602	ENSG00000121749.15|TBC1D15|pc|chr12:71854562:71854602:+	0	+
#Deleted in new
chr12	71854784	71854853	ENSG00000121749.15|TBC1D15|pc|chr12:71854784:71854853:+	0	+
#Deleted in new
chr12	71861404	71861496	ENSG00000121749.15|TBC1D15|pc|chr12:71861404:71861496:+	0	+
#Deleted in new
chr12	71868801	71868921	ENSG00000121749.15|TBC1D15|pc|chr12:71868801:71868921:+	0	+
#Deleted in new
chr12	71907862	71907989	ENSG00000121749.15|TBC1D15|pc|chr12:71907862:71907989:+	0	+
#Deleted in new
chr12	71964333	71965490	ENSG00000139287.12|TPH2|pc|chr12:71964333:71965490:+	0	+
#Deleted in new
chr12	72042824	72042884	ENSG00000139287.12|TPH2|pc|chr12:72042824:72042884:+	0	+
#Deleted in new
chr12	72046884	72046980	ENSG00000258115.1|AC090109.1|lncRNA|chr12:72046884:72046980:-	0	-
#Deleted in new
chr12	72047509	72047628	ENSG00000258115.1|AC090109.1|lncRNA|chr12:72047509:72047628:-	0	-
#Deleted in new
chr12	72047555	72047657	ENSG00000139287.12|TPH2|pc|chr12:72047555:72047657:+	0	+
#Deleted in new
chr12	72052601	72052721	ENSG00000258115.1|AC090109.1|lncRNA|chr12:72052601:72052721:-	0	-
#Deleted in new
chr12	72105647	72105752	ENSG00000072657.8|TRHDE|pc|chr12:72105647:72105752:+	0	+
#Deleted in new
chr12	72105647	72105752	ENSG00000139287.12|TPH2|pc|chr12:72105647:72105752:+	0	+
#Deleted in new
chr12	7212771	7212871	ENSG00000139197.10|PEX5|pc|chr12:7212771:7212871:+	0	+
#Deleted in new
chr12	72140119	72140442	ENSG00000139287.12|TPH2|pc|chr12:72140119:72140442:+	0	+
#Deleted in new
chr12	7218401	7218571	ENSG00000139197.10|PEX5|pc|chr12:7218401:7218571:+	0	+
#Deleted in new
chr12	7218401	7218574	ENSG00000139197.10|PEX5|pc|chr12:7218401:7218574:+	0	+
#Deleted in new
chr12	72186156	72186618	ENSG00000139287.12|TPH2|pc|chr12:72186156:72186618:+	0	+
#Deleted in new
chr12	72255680	72255774	ENSG00000236333.3|TRHDE-AS1|lncRNA|chr12:72255680:72255774:-	0	-
#Deleted in new
chr1	27229105	27229235	ENSG00000224311.1|AL590640.1|lncRNA|chr1:27229105:27229235:-	0	-
#Deleted in new
chr12	72306661	72306744	ENSG00000072657.8|TRHDE|pc|chr12:72306661:72306744:+	0	+
#Partially deleted in new
chr12	72560538	72560755	ENSG00000072657.8|TRHDE|pc|chr12:72560538:72560755:+	0	+
#Deleted in new
chr12	72728784	72728844	ENSG00000258235.1|AC133480.1|lncRNA|chr12:72728784:72728844:-	0	-
#Deleted in new
chr12	73127889	73128016	ENSG00000258294.5|AC090503.2|lncRNA|chr12:73127889:73128016:-	0	-
#Deleted in new
chr12	73128984	73129161	ENSG00000258294.5|AC090503.2|lncRNA|chr12:73128984:73129161:-	0	-
#Deleted in new
chr12	73129091	73129161	ENSG00000258294.5|AC090503.2|lncRNA|chr12:73129091:73129161:-	0	-
#Deleted in new
chr12	73129091	73129162	ENSG00000258294.5|AC090503.2|lncRNA|chr12:73129091:73129162:-	0	-
#Deleted in new
chr12	73159189	73159443	ENSG00000258123.1|LINC02444|lncRNA|chr12:73159189:73159443:+	0	+
#Deleted in new
chr12	73163193	73163233	ENSG00000258123.1|LINC02444|lncRNA|chr12:73163193:73163233:+	0	+
#Deleted in new
chr12	73207446	73208317	ENSG00000258123.1|LINC02444|lncRNA|chr12:73207446:73208317:+	0	+
#Deleted in new
chr1	27332446	27332559	ENSG00000186501.14|TMEM222|pc|chr1:27332446:27332559:+	0	+
#Deleted in new
chr12	7346684	7347147	ENSG00000177675.8|CD163L1|pc|chr12:7346684:7347147:-	0	-
#Deleted in new
chr12	7354959	7355130	ENSG00000177675.8|CD163L1|pc|chr12:7354959:7355130:-	0	-
#Deleted in new
chr12	7354962	7355130	ENSG00000177675.8|CD163L1|pc|chr12:7354962:7355130:-	0	-
#Deleted in new
chr12	7355041	7355130	ENSG00000177675.8|CD163L1|pc|chr12:7355041:7355130:-	0	-
#Deleted in new
chr12	7357379	7357486	ENSG00000177675.8|CD163L1|pc|chr12:7357379:7357486:-	0	-
#Deleted in new
chr12	7357379	7357606	ENSG00000177675.8|CD163L1|pc|chr12:7357379:7357606:-	0	-
#Deleted in new
chr12	7367235	7367331	ENSG00000177675.8|CD163L1|pc|chr12:7367235:7367331:-	0	-
#Deleted in new
chr12	7367235	7367548	ENSG00000177675.8|CD163L1|pc|chr12:7367235:7367548:-	0	-
#Deleted in new
chr12	7368057	7368197	ENSG00000177675.8|CD163L1|pc|chr12:7368057:7368197:-	0	-
#Deleted in new
chr12	7368086	7368197	ENSG00000177675.8|CD163L1|pc|chr12:7368086:7368197:-	0	-
#Deleted in new
chr12	7368836	7368965	ENSG00000177675.8|CD163L1|pc|chr12:7368836:7368965:-	0	-
#Deleted in new
chr12	7368932	7368965	ENSG00000177675.8|CD163L1|pc|chr12:7368932:7368965:-	0	-
#Deleted in new
chr12	7368932	7368970	ENSG00000177675.8|CD163L1|pc|chr12:7368932:7368970:-	0	-
#Deleted in new
chr12	73760688	73760760	ENSG00000257750.1|LINC02445|lncRNA|chr12:73760688:73760760:+	0	+
#Deleted in new
chr12	73767615	73767747	ENSG00000257750.1|LINC02445|lncRNA|chr12:73767615:73767747:+	0	+
#Deleted in new
chr12	73771585	73771727	ENSG00000257750.1|LINC02445|lncRNA|chr12:73771585:73771727:+	0	+
#Deleted in new
chr12	73906939	73907074	ENSG00000257587.1|AC136188.1|lncRNA|chr12:73906939:73907074:+	0	+
#Deleted in new
chr12	74039085	74039457	ENSG00000258332.1|LINC02394|lncRNA|chr12:74039085:74039457:+	0	+
#Deleted in new
chr12	74045657	74045828	ENSG00000258332.1|LINC02394|lncRNA|chr12:74045657:74045828:+	0	+
#Deleted in new
chr12	74133165	74133216	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74133165:74133216:-	0	-
#Deleted in new
chr12	74157789	74157884	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74157789:74157884:-	0	-
#Deleted in new
chr12	74194073	74194153	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74194073:74194153:-	0	-
#Deleted in new
chr12	74199571	74200073	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74199571:74200073:-	0	-
#Deleted in new
chr12	74269308	74269453	ENSG00000257183.1|AC090502.3|lncRNA|chr12:74269308:74269453:-	0	-
#Deleted in new
chr12	74283593	74283669	ENSG00000257183.1|AC090502.3|lncRNA|chr12:74283593:74283669:-	0	-
#Deleted in new
chr12	74285024	74285093	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74285024:74285093:-	0	-
#Deleted in new
chr12	74285035	74285093	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74285035:74285093:-	0	-
#Deleted in new
chr12	74285697	74285946	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74285697:74285946:-	0	-
#Deleted in new
chr12	74285859	74285946	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74285859:74285946:-	0	-
#Partially deleted in new
chr12	74292106	74292944	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74292106:74292944:-	0	-
#Deleted in new
chr12	74292314	74292534	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74292314:74292534:-	0	-
#Partially deleted in new
chr12	74292314	74292622	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74292314:74292622:-	0	-
#Partially deleted in new
chr12	74292314	74292631	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74292314:74292631:-	0	-
#Deleted in new
chr12	74306557	74306669	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74306557:74306669:-	0	-
#Deleted in new
chr12	74321534	74321694	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74321534:74321694:-	0	-
#Deleted in new
chr12	74377562	74377632	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74377562:74377632:-	0	-
#Deleted in new
chr12	74402468	74402535	ENSG00000251138.6|AC090502.1|lncRNA|chr12:74402468:74402535:-	0	-
#Deleted in new
chr12	7441153	7441246	ENSG00000177675.8|CD163L1|pc|chr12:7441153:7441246:-	0	-
#Deleted in new
chr12	7451003	7451055	ENSG00000177675.8|CD163L1|pc|chr12:7451003:7451055:-	0	-
#Deleted in new
chr1	27457197	27457338	ENSG00000241169.1|FO393419.2|lncRNA|chr1:27457197:27457338:+	0	+
#Deleted in new
chr1	27459295	27459582	ENSG00000241169.1|FO393419.2|lncRNA|chr1:27459295:27459582:+	0	+
#Deleted in new
chr12	7471845	7471936	ENSG00000177575.12|CD163|pc|chr12:7471845:7471936:-	0	-
#Deleted in new
chr12	7473107	7473179	ENSG00000177575.12|CD163|pc|chr12:7473107:7473179:-	0	-
#Deleted in new
chr12	75020968	75021084	ENSG00000257434.1|AC073525.1|lncRNA|chr12:75020968:75021084:+	0	+
#Deleted in new
chr12	75025073	75025185	ENSG00000257434.1|AC073525.1|lncRNA|chr12:75025073:75025185:+	0	+
#Partially deleted in new
chr12	75025973	75026204	ENSG00000257434.1|AC073525.1|lncRNA|chr12:75025973:75026204:+	0	+
#Partially deleted in new
chr12	75025986	75026204	ENSG00000257434.1|AC073525.1|lncRNA|chr12:75025986:75026204:+	0	+
#Deleted in new
chr12	75124805	75124938	ENSG00000166006.12|KCNC2|pc|chr12:75124805:75124938:-	0	-
#Deleted in new
chr12	75234739	75235117	ENSG00000254451.2|AC091534.1|lncRNA|chr12:75234739:75235117:+	0	+
#Deleted in new
chr12	75235039	75235117	ENSG00000254451.2|AC091534.1|lncRNA|chr12:75235039:75235117:+	0	+
#Deleted in new
chr12	75250492	75250642	ENSG00000254451.2|AC091534.1|lncRNA|chr12:75250492:75250642:+	0	+
#Deleted in new
chr12	75250492	75251865	ENSG00000254451.2|AC091534.1|lncRNA|chr12:75250492:75251865:+	0	+
#Partially deleted in new
chr12	75260574	75260674	ENSG00000254451.2|AC091534.1|lncRNA|chr12:75260574:75260674:+	0	+
#Deleted in new
chr12	75275978	75276247	ENSG00000180881.19|CAPS2|pc|chr12:75275978:75276247:-	0	-
#Deleted in new
chr12	75291743	75291820	ENSG00000180881.19|CAPS2|pc|chr12:75291743:75291820:-	0	-
#Deleted in new
chr12	75295042	75295112	ENSG00000254451.2|AC091534.1|lncRNA|chr12:75295042:75295112:+	0	+
#Deleted in new
chr12	75295055	75295168	ENSG00000254451.2|AC091534.1|lncRNA|chr12:75295055:75295168:+	0	+
#Partially deleted in new
chr1	27530359	27530561	ENSG00000237429.1|BX293535.1|lncRNA|chr1:27530359:27530561:+	0	+
#Deleted in new
chr12	75359883	75361019	ENSG00000180881.19|CAPS2|pc|chr12:75359883:75361019:-	0	-
#Deleted in new
chr12	75363101	75363190	ENSG00000173401.9|GLIPR1L1|pc|chr12:75363101:75363190:+	0	+
#Deleted in new
chr12	75364808	75365263	ENSG00000180881.19|CAPS2|pc|chr12:75364808:75365263:-	0	-
#Deleted in new
chr12	75366832	75367013	ENSG00000173401.9|GLIPR1L1|pc|chr12:75366832:75367013:+	0	+
#Deleted in new
chr12	75366936	75367013	ENSG00000173401.9|GLIPR1L1|pc|chr12:75366936:75367013:+	0	+
#Deleted in new
chr12	75369959	75369986	ENSG00000173401.9|GLIPR1L1|pc|chr12:75369959:75369986:+	0	+
#Deleted in new
chr12	75370084	75370242	ENSG00000173401.9|GLIPR1L1|pc|chr12:75370084:75370242:+	0	+
#Deleted in new
chr12	75370084	75370384	ENSG00000173401.9|GLIPR1L1|pc|chr12:75370084:75370384:+	0	+
#Deleted in new
chr12	75370084	75370387	ENSG00000173401.9|GLIPR1L1|pc|chr12:75370084:75370387:+	0	+
#Deleted in new
chr12	75370084	75370560	ENSG00000173401.9|GLIPR1L1|pc|chr12:75370084:75370560:+	0	+
#Deleted in new
chr12	75371078	75371482	ENSG00000180881.19|CAPS2|pc|chr12:75371078:75371482:-	0	-
#Deleted in new
chr12	75373497	75373918	ENSG00000180881.19|CAPS2|pc|chr12:75373497:75373918:-	0	-
#Deleted in new
chr12	75390321	75390381	ENSG00000180881.19|CAPS2|pc|chr12:75390321:75390381:-	0	-
#Deleted in new
chr12	75403016	75403146	ENSG00000180481.10|GLIPR1L2|pc|chr12:75403016:75403146:+	0	+
#Deleted in new
chr12	75483453	75484890	ENSG00000257497.2|AC121761.1|lncRNA|chr12:75483453:75484890:-	0	-
#Deleted in new
chr12	75487738	75487809	ENSG00000139278.9|GLIPR1|pc|chr12:75487738:75487809:+	0	+
#Deleted in new
chr12	75489775	75489820	ENSG00000257497.2|AC121761.1|lncRNA|chr12:75489775:75489820:-	0	-
#Partially deleted in new
chr12	75490860	75499951	ENSG00000111615.13|KRR1|pc|chr12:75490860:75499951:-	0	-
#Deleted in new
chr12	75631166	75631314	ENSG00000258077.2|AC078923.1|lncRNA|chr12:75631166:75631314:-	0	-
#Deleted in new
chr12	75694599	75694770	ENSG00000258088.1|AC078820.1|lncRNA|chr12:75694599:75694770:-	0	-
#Deleted in new
chr12	75694856	75694975	ENSG00000258088.1|AC078820.1|lncRNA|chr12:75694856:75694975:-	0	-
#Deleted in new
chr12	75698706	75698816	ENSG00000258088.1|AC078820.1|lncRNA|chr12:75698706:75698816:-	0	-
#Deleted in new
chr12	75983720	75984015	ENSG00000258077.2|AC078923.1|lncRNA|chr12:75983720:75984015:-	0	-
#Partially deleted in new
chr12	76036586	76048464	ENSG00000187109.13|NAP1L1|pc|chr12:76036586:76048464:-	0	-
#Split in new
chr12	76056032	76057885	ENSG00000187109.13|NAP1L1|pc|chr12:76056032:76057885:-	0	-
#Duplicated in new
chr12	76059595	76059878	ENSG00000187109.13|NAP1L1|pc|chr12:76059595:76059878:-	0	-
#Deleted in new
chr12	76061009	76061087	ENSG00000187109.13|NAP1L1|pc|chr12:76061009:76061087:-	0	-
#Deleted in new
chr12	76259838	76259981	ENSG00000257219.5|LINC02407|lncRNA|chr12:76259838:76259981:+	0	+
#Deleted in new
chr12	76259904	76259981	ENSG00000257219.5|LINC02407|lncRNA|chr12:76259904:76259981:+	0	+
#Deleted in new
chr12	76292115	76292270	ENSG00000257219.5|LINC02407|lncRNA|chr12:76292115:76292270:+	0	+
#Deleted in new
chr12	76293812	76294005	ENSG00000257219.5|LINC02407|lncRNA|chr12:76293812:76294005:+	0	+
#Deleted in new
chr12	76302761	76302813	ENSG00000257219.5|LINC02407|lncRNA|chr12:76302761:76302813:+	0	+
#Deleted in new
chr12	76304473	76305131	ENSG00000257219.5|LINC02407|lncRNA|chr12:76304473:76305131:+	0	+
#Deleted in new
chr12	76534233	76534281	ENSG00000091039.16|OSBPL8|pc|chr12:76534233:76534281:-	0	-
#Deleted in new
chr12	76537956	76537986	ENSG00000091039.16|OSBPL8|pc|chr12:76537956:76537986:-	0	-
#Deleted in new
chr12	76570710	76570766	ENSG00000257526.2|AC107032.2|lncRNA|chr12:76570710:76570766:+	0	+
#Deleted in new
chr1	27660327	27660722	ENSG00000233975.1|AL445490.2|lncRNA|chr1:27660327:27660722:-	0	-
#Deleted in new
chr12	76615302	76615567	ENSG00000257526.2|AC107032.2|lncRNA|chr12:76615302:76615567:+	0	+
#Deleted in new
chr1	27669906	27670026	ENSG00000225886.3|AL445490.1|lncRNA|chr1:27669906:27670026:+	0	+
#Deleted in new
chr1	27669906	27670276	ENSG00000225886.3|AL445490.1|lncRNA|chr1:27669906:27670276:+	0	+
#Deleted in new
chr1	27670311	27670429	ENSG00000225886.3|AL445490.1|lncRNA|chr1:27670311:27670429:+	0	+
#Deleted in new
chr1	27675727	27675859	ENSG00000225886.3|AL445490.1|lncRNA|chr1:27675727:27675859:+	0	+
#Deleted in new
chr12	76769072	76769201	ENSG00000186908.14|ZDHHC17|pc|chr12:76769072:76769201:+	0	+
#Deleted in new
chr12	76781624	76781683	ENSG00000186908.14|ZDHHC17|pc|chr12:76781624:76781683:+	0	+
#Deleted in new
chr12	76781628	76781683	ENSG00000186908.14|ZDHHC17|pc|chr12:76781628:76781683:+	0	+
#Deleted in new
chr12	76813312	76813449	ENSG00000186908.14|ZDHHC17|pc|chr12:76813312:76813449:+	0	+
#Deleted in new
chr1	27683178	27683371	ENSG00000225886.3|AL445490.1|lncRNA|chr1:27683178:27683371:+	0	+
#Deleted in new
chr12	76840058	76840483	ENSG00000186908.14|ZDHHC17|pc|chr12:76840058:76840483:+	0	+
#Deleted in new
chr12	76840390	76840483	ENSG00000186908.14|ZDHHC17|pc|chr12:76840390:76840483:+	0	+
#Partially deleted in new
chr12	76840964	76841106	ENSG00000186908.14|ZDHHC17|pc|chr12:76840964:76841106:+	0	+
#Partially deleted in new
chr12	76843913	76845802	ENSG00000186908.14|ZDHHC17|pc|chr12:76843913:76845802:+	0	+
#Deleted in new
chr12	76844874	76844947	ENSG00000186908.14|ZDHHC17|pc|chr12:76844874:76844947:+	0	+
#Deleted in new
chr1	27690576	27691032	ENSG00000225886.3|AL445490.1|lncRNA|chr1:27690576:27691032:+	0	+
#Deleted in new
chr1	27702800	27702991	ENSG00000225886.3|AL445490.1|lncRNA|chr1:27702800:27702991:+	0	+
#Deleted in new
chr1	27702800	27703049	ENSG00000225886.3|AL445490.1|lncRNA|chr1:27702800:27703049:+	0	+
#Deleted in new
chr1	27702800	27703063	ENSG00000225886.3|AL445490.1|lncRNA|chr1:27702800:27703063:+	0	+
#Partially deleted in new
chr12	7711453	7711652	ENSG00000187569.2|DPPA3|pc|chr12:7711453:7711652:+	0	+
#Deleted in new
chr12	7716197	7716239	ENSG00000187569.2|DPPA3|pc|chr12:7716197:7716239:+	0	+
#Deleted in new
chr12	77219602	77219812	ENSG00000257677.1|LINC02464|lncRNA|chr12:77219602:77219812:-	0	-
#Duplicated in new
chr12	7729414	7729740	ENSG00000198178.10|CLEC4C|pc|chr12:7729414:7729740:-	0	-
#Deleted in new
chr1	27730231	27730333	ENSG00000009780.15|FAM76A|pc|chr1:27730231:27730333:+	0	+
#Deleted in new
chr12	77390470	77390864	ENSG00000257835.1|AC073591.1|lncRNA|chr12:77390470:77390864:+	0	+
#Deleted in new
chr1	2773946	2774066	ENSG00000283259.1|AC242022.1|lncRNA|chr1:2773946:2774066:+	0	+
#Deleted in new
chr12	7741420	7741531	ENSG00000198178.10|CLEC4C|pc|chr12:7741420:7741531:-	0	-
#Deleted in new
chr12	7747317	7747339	ENSG00000198178.10|CLEC4C|pc|chr12:7747317:7747339:-	0	-
#Deleted in new
chr12	7747317	7747478	ENSG00000198178.10|CLEC4C|pc|chr12:7747317:7747478:-	0	-
#Deleted in new
chr12	7747317	7747481	ENSG00000198178.10|CLEC4C|pc|chr12:7747317:7747481:-	0	-
#Deleted in new
chr12	7747317	7747505	ENSG00000198178.10|CLEC4C|pc|chr12:7747317:7747505:-	0	-
#Deleted in new
chr12	7747317	7747522	ENSG00000198178.10|CLEC4C|pc|chr12:7747317:7747522:-	0	-
#Deleted in new
chr1	2774789	2774910	ENSG00000283259.1|AC242022.1|lncRNA|chr1:2774789:2774910:+	0	+
#Deleted in new
chr12	7749112	7749199	ENSG00000198178.10|CLEC4C|pc|chr12:7749112:7749199:-	0	-
#Deleted in new
chr12	7749112	7749473	ENSG00000198178.10|CLEC4C|pc|chr12:7749112:7749473:-	0	-
#Deleted in new
chr1	2774992	2775072	ENSG00000283259.1|AC242022.1|lncRNA|chr1:2774992:2775072:+	0	+
#Deleted in new
chr12	7751429	7751605	ENSG00000198178.10|CLEC4C|pc|chr12:7751429:7751605:-	0	-
#Deleted in new
chr1	2775154	2775274	ENSG00000283259.1|AC242022.1|lncRNA|chr1:2775154:2775274:+	0	+
#Deleted in new
chr1	2775356	2775437	ENSG00000283259.1|AC242022.1|lncRNA|chr1:2775356:2775437:+	0	+
#Deleted in new
chr1	2775518	2775634	ENSG00000283259.1|AC242022.1|lncRNA|chr1:2775518:2775634:+	0	+
#Deleted in new
chr1	2776048	2776129	ENSG00000283259.1|AC242022.1|lncRNA|chr1:2776048:2776129:+	0	+
#Deleted in new
chr1	2776369	2776473	ENSG00000283259.1|AC242022.1|lncRNA|chr1:2776369:2776473:+	0	+
#Deleted in new
chr12	7765215	7765387	ENSG00000205857.2|NANOGNB|pc|chr12:7765215:7765387:+	0	+
#Deleted in new
chr12	7766081	7766170	ENSG00000205857.2|NANOGNB|pc|chr12:7766081:7766170:+	0	+
#Deleted in new
chr12	7769982	7770315	ENSG00000205857.2|NANOGNB|pc|chr12:7769982:7770315:+	0	+
#Deleted in new
chr12	7770438	7770518	ENSG00000205857.2|NANOGNB|pc|chr12:7770438:7770518:+	0	+
#Deleted in new
chr12	7773799	7774121	ENSG00000205857.2|NANOGNB|pc|chr12:7773799:7774121:+	0	+
#Deleted in new
chr12	77775782	77775844	ENSG00000258066.1|AC138331.1|lncRNA|chr12:77775782:77775844:+	0	+
#Deleted in new
chr12	7788418	7788578	ENSG00000111704.10|NANOG|pc|chr12:7788418:7788578:+	0	+
#Split in new
chr12	7794678	7799141	ENSG00000111704.10|NANOG|pc|chr12:7794678:7799141:+	0	+
#Deleted in new
chr12	77950551	77950895	ENSG00000067798.14|NAV3|pc|chr12:77950551:77950895:+	0	+
#Deleted in new
chr12	78052180	78052220	ENSG00000258225.1|AC073571.1|lncRNA|chr12:78052180:78052220:-	0	-
#Deleted in new
chr12	78088766	78088814	ENSG00000258225.1|AC073571.1|lncRNA|chr12:78088766:78088814:-	0	-
#Deleted in new
chr12	78091510	78091737	ENSG00000258225.1|AC073571.1|lncRNA|chr12:78091510:78091737:-	0	-
#Deleted in new
chr12	78326679	78327376	ENSG00000258220.1|LINC02424|lncRNA|chr12:78326679:78327376:-	0	-
#Deleted in new
chr12	78396606	78396756	ENSG00000258084.5|AC128707.1|lncRNA|chr12:78396606:78396756:+	0	+
#Deleted in new
chr12	7839716	7839920	ENSG00000173262.11|SLC2A14|pc|chr12:7839716:7839920:-	0	-
#Deleted in new
chr12	78423191	78423286	ENSG00000258084.5|AC128707.1|lncRNA|chr12:78423191:78423286:+	0	+
#Partially deleted in new
chr12	78426825	78426887	ENSG00000257879.1|AC130415.1|lncRNA|chr12:78426825:78426887:-	0	-
#Deleted in new
chr12	78440652	78440788	ENSG00000257879.1|AC130415.1|lncRNA|chr12:78440652:78440788:-	0	-
#Deleted in new
chr12	78442140	78442952	ENSG00000257879.1|AC130415.1|lncRNA|chr12:78442140:78442952:-	0	-
#Deleted in new
chr12	78451710	78451943	ENSG00000257165.5|AC079362.1|lncRNA|chr12:78451710:78451943:-	0	-
#Deleted in new
chr12	78468566	78468713	ENSG00000258084.5|AC128707.1|lncRNA|chr12:78468566:78468713:+	0	+
#Deleted in new
chr12	78477392	78477489	ENSG00000258084.5|AC128707.1|lncRNA|chr12:78477392:78477489:+	0	+
#Deleted in new
chr12	78482784	78482809	ENSG00000258084.5|AC128707.1|lncRNA|chr12:78482784:78482809:+	0	+
#Deleted in new
chr12	78482784	78483019	ENSG00000258084.5|AC128707.1|lncRNA|chr12:78482784:78483019:+	0	+
#Deleted in new
chr12	78499299	78499492	ENSG00000257165.5|AC079362.1|lncRNA|chr12:78499299:78499492:-	0	-
#Deleted in new
chr12	7863368	7863455	ENSG00000173262.11|SLC2A14|pc|chr12:7863368:7863455:-	0	-
#Deleted in new
chr12	7863368	7863457	ENSG00000173262.11|SLC2A14|pc|chr12:7863368:7863457:-	0	-
#Deleted in new
chr12	7863436	7863457	ENSG00000173262.11|SLC2A14|pc|chr12:7863436:7863457:-	0	-
#Deleted in new
chr12	7869862	7869937	ENSG00000173262.11|SLC2A14|pc|chr12:7869862:7869937:-	0	-
#Deleted in new
chr12	7872110	7872372	ENSG00000173262.11|SLC2A14|pc|chr12:7872110:7872372:-	0	-
#Deleted in new
chr12	7872110	7872380	ENSG00000173262.11|SLC2A14|pc|chr12:7872110:7872380:-	0	-
#Deleted in new
chr12	7872721	7872802	ENSG00000173262.11|SLC2A14|pc|chr12:7872721:7872802:-	0	-
#Deleted in new
chr12	7872806	7872824	ENSG00000173262.11|SLC2A14|pc|chr12:7872806:7872824:-	0	-
#Deleted in new
chr12	7872806	7872852	ENSG00000173262.11|SLC2A14|pc|chr12:7872806:7872852:-	0	-
#Deleted in new
chr12	7872806	7872861	ENSG00000173262.11|SLC2A14|pc|chr12:7872806:7872861:-	0	-
#Deleted in new
chr12	7872806	7872864	ENSG00000173262.11|SLC2A14|pc|chr12:7872806:7872864:-	0	-
#Deleted in new
chr12	7872806	7872874	ENSG00000173262.11|SLC2A14|pc|chr12:7872806:7872874:-	0	-
#Deleted in new
chr12	7872806	7872883	ENSG00000173262.11|SLC2A14|pc|chr12:7872806:7872883:-	0	-
#Deleted in new
chr12	7872806	7872916	ENSG00000173262.11|SLC2A14|pc|chr12:7872806:7872916:-	0	-
#Deleted in new
chr12	7872859	7872880	ENSG00000173262.11|SLC2A14|pc|chr12:7872859:7872880:-	0	-
#Deleted in new
chr12	7872859	7873027	ENSG00000173262.11|SLC2A14|pc|chr12:7872859:7873027:-	0	-
#Deleted in new
chr12	7872859	7873039	ENSG00000173262.11|SLC2A14|pc|chr12:7872859:7873039:-	0	-
#Deleted in new
chr12	7873018	7873114	ENSG00000173262.11|SLC2A14|pc|chr12:7873018:7873114:-	0	-
#Deleted in new
chr12	7873018	7873251	ENSG00000173262.11|SLC2A14|pc|chr12:7873018:7873251:-	0	-
#Deleted in new
chr12	7873018	7873484	ENSG00000173262.11|SLC2A14|pc|chr12:7873018:7873484:-	0	-
#Deleted in new
chr12	78804347	78804374	ENSG00000257948.1|AC068993.2|lncRNA|chr12:78804347:78804374:+	0	+
#Partially deleted in new
chr1	27883397	27885451	ENSG00000130775.15|THEMIS2|pc|chr1:27883397:27885451:+	0	+
#Deleted in new
chr12	79045550	79045644	ENSG00000257191.1|AC090709.1|lncRNA|chr12:79045550:79045644:-	0	-
#Deleted in new
chr12	79103013	79103055	ENSG00000067715.13|SYT1|pc|chr12:79103013:79103055:+	0	+
#Partially deleted in new
chr12	7919665	7919750	ENSG00000059804.15|SLC2A3|pc|chr12:7919665:7919750:-	0	-
#Deleted in new
chr1	27936536	27936663	ENSG00000130768.14|SMPDL3B|pc|chr1:27936536:27936663:+	0	+
#Deleted in new
chr1	27938874	27939079	ENSG00000227050.1|AL512288.1|lncRNA|chr1:27938874:27939079:-	0	-
#Partially deleted in new
chr12	79393671	79393925	ENSG00000257894.2|AC027288.3|lncRNA|chr12:79393671:79393925:-	0	-
#Deleted in new
chr1	27941470	27941576	ENSG00000130768.14|SMPDL3B|pc|chr1:27941470:27941576:+	0	+
#Deleted in new
chr12	79455314	79455460	ENSG00000257894.2|AC027288.3|lncRNA|chr12:79455314:79455460:-	0	-
#Deleted in new
chr12	79503168	79503362	ENSG00000257894.2|AC027288.3|lncRNA|chr12:79503168:79503362:-	0	-
#Deleted in new
chr12	79503168	79503396	ENSG00000257894.2|AC027288.3|lncRNA|chr12:79503168:79503396:-	0	-
#Deleted in new
chr12	79540202	79540446	ENSG00000257474.5|AC027288.1|lncRNA|chr12:79540202:79540446:+	0	+
#Deleted in new
chr12	79542205	79542410	ENSG00000257474.5|AC027288.1|lncRNA|chr12:79542205:79542410:+	0	+
#Deleted in new
chr12	79542308	79542391	ENSG00000257474.5|AC027288.1|lncRNA|chr12:79542308:79542391:+	0	+
#Deleted in new
chr12	79545529	79545558	ENSG00000257474.5|AC027288.1|lncRNA|chr12:79545529:79545558:+	0	+
#Deleted in new
chr12	79574978	79575067	ENSG00000177425.10|PAWR|pc|chr12:79574978:79575067:-	0	-
#Deleted in new
chr12	79632105	79632162	ENSG00000177425.10|PAWR|pc|chr12:79632105:79632162:-	0	-
#Deleted in new
chr12	79635549	79635620	ENSG00000177425.10|PAWR|pc|chr12:79635549:79635620:-	0	-
#Partially deleted in new
chr12	79667978	79668408	ENSG00000177425.10|PAWR|pc|chr12:79667978:79668408:-	0	-
#Deleted in new
chr1	27977272	27977389	ENSG00000158161.15|EYA3|pc|chr1:27977272:27977389:-	0	-
#Deleted in new
chr12	79782570	79782595	ENSG00000058272.16|PPP1R12A|pc|chr12:79782570:79782595:-	0	-
#Partially deleted in new
chr12	79786776	79788783	ENSG00000058272.16|PPP1R12A|pc|chr12:79786776:79788783:-	0	-
#Deleted in new
chr12	79818783	79819465	ENSG00000277130.1|AC073569.3|lncRNA|chr12:79818783:79819465:-	0	-
#Deleted in new
chr12	79823777	79823937	ENSG00000258044.1|AC073569.1|lncRNA|chr12:79823777:79823937:+	0	+
#Deleted in new
chr12	79913796	79913911	ENSG00000058272.16|PPP1R12A|pc|chr12:79913796:79913911:-	0	-
#Deleted in new
chr12	79938727	79938852	ENSG00000257557.2|PPP1R12A-AS1|lncRNA|chr12:79938727:79938852:+	0	+
#Partially deleted in new
chr12	79940361	79942712	ENSG00000257557.2|PPP1R12A-AS1|lncRNA|chr12:79940361:79942712:+	0	+
#Deleted in new
chr12	80366267	80366353	ENSG00000165899.10|OTOGL|pc|chr12:80366267:80366353:+	0	+
#Deleted in new
chr12	80403085	80403223	ENSG00000139304.12|PTPRQ|pc|chr12:80403085:80403223:+	0	+
#Deleted in new
chr12	80403635	80403771	ENSG00000139304.12|PTPRQ|pc|chr12:80403635:80403771:+	0	+
#Deleted in new
chr12	80404212	80404470	ENSG00000139304.12|PTPRQ|pc|chr12:80404212:80404470:+	0	+
#Deleted in new
chr12	80409267	80409457	ENSG00000139304.12|PTPRQ|pc|chr12:80409267:80409457:+	0	+
#Deleted in new
chr12	80409267	80409550	ENSG00000139304.12|PTPRQ|pc|chr12:80409267:80409550:+	0	+
#Deleted in new
chr12	80409580	80409885	ENSG00000139304.12|PTPRQ|pc|chr12:80409580:80409885:+	0	+
#Partially deleted in new
chr12	80411738	80412014	ENSG00000139304.12|PTPRQ|pc|chr12:80411738:80412014:+	0	+
#Deleted in new
chr12	80427456	80427551	ENSG00000139304.12|PTPRQ|pc|chr12:80427456:80427551:+	0	+
#Deleted in new
chr12	80434935	80435101	ENSG00000139304.12|PTPRQ|pc|chr12:80434935:80435101:+	0	+
#Deleted in new
chr12	80435082	80435101	ENSG00000139304.12|PTPRQ|pc|chr12:80435082:80435101:+	0	+
#Deleted in new
chr12	80436124	80436382	ENSG00000139304.12|PTPRQ|pc|chr12:80436124:80436382:+	0	+
#Partially deleted in new
chr12	8049967	8050071	ENSG00000065970.8|FOXJ2|pc|chr12:8049967:8050071:+	0	+
#Deleted in new
chr12	8050162	8050253	ENSG00000065970.8|FOXJ2|pc|chr12:8050162:8050253:+	0	+
#Deleted in new
chr12	80512641	80512797	ENSG00000139304.12|PTPRQ|pc|chr12:80512641:80512797:+	0	+
#Deleted in new
chr12	80525911	80525989	ENSG00000139304.12|PTPRQ|pc|chr12:80525911:80525989:+	0	+
#Deleted in new
chr12	80583682	80584243	ENSG00000257429.1|AC074031.1|lncRNA|chr12:80583682:80584243:-	0	-
#Deleted in new
chr12	80586618	80586758	ENSG00000257429.1|AC074031.1|lncRNA|chr12:80586618:80586758:-	0	-
#Deleted in new
chr12	80763153	80763214	ENSG00000257741.5|LINC01490|lncRNA|chr12:80763153:80763214:+	0	+
#Deleted in new
chr12	80763153	80763228	ENSG00000257741.5|LINC01490|lncRNA|chr12:80763153:80763228:+	0	+
#Deleted in new
chr12	80763589	80763704	ENSG00000257741.5|LINC01490|lncRNA|chr12:80763589:80763704:+	0	+
#Deleted in new
chr12	80766749	80766820	ENSG00000257741.5|LINC01490|lncRNA|chr12:80766749:80766820:+	0	+
#Partially deleted in new
chr12	8090194	8091850	ENSG00000089818.17|NECAP1|pc|chr12:8090194:8091850:+	0	+
#Deleted in new
chr12	8094650	8094743	ENSG00000089818.17|NECAP1|pc|chr12:8094650:8094743:+	0	+
#Deleted in new
chr12	81022382	81022519	ENSG00000111058.7|ACSS3|pc|chr12:81022382:81022519:+	0	+
#Deleted in new
chr12	81124398	81124513	ENSG00000258026.1|AC078955.1|lncRNA|chr12:81124398:81124513:-	0	-
#Deleted in new
chr1	2811849	2811998	ENSG00000233234.1|AL592464.2|lncRNA|chr1:2811849:2811998:-	0	-
#Duplicated in new
chr12	8120907	8121795	ENSG00000284697.1|AC006511.5|lncRNA|chr12:8120907:8121795:+	0	+
#Deleted in new
chr1	2812234	2812692	ENSG00000233234.1|AL592464.2|lncRNA|chr1:2812234:2812692:-	0	-
#Deleted in new
chr12	81270674	81270849	ENSG00000257467.5|PPFIA2-AS1|lncRNA|chr12:81270674:81270849:+	0	+
#Deleted in new
chr12	81270683	81270849	ENSG00000257467.5|PPFIA2-AS1|lncRNA|chr12:81270683:81270849:+	0	+
#Deleted in new
chr12	81279184	81279305	ENSG00000257467.5|PPFIA2-AS1|lncRNA|chr12:81279184:81279305:+	0	+
#Deleted in new
chr12	81279188	81279305	ENSG00000257467.5|PPFIA2-AS1|lncRNA|chr12:81279188:81279305:+	0	+
#Deleted in new
chr12	81279191	81279305	ENSG00000257467.5|PPFIA2-AS1|lncRNA|chr12:81279191:81279305:+	0	+
#Deleted in new
chr12	81279200	81279305	ENSG00000257467.5|PPFIA2-AS1|lncRNA|chr12:81279200:81279305:+	0	+
#Partially deleted in new
chr12	81292321	81292897	ENSG00000257467.5|PPFIA2-AS1|lncRNA|chr12:81292321:81292897:+	0	+
#Deleted in new
chr12	81292342	81292524	ENSG00000257467.5|PPFIA2-AS1|lncRNA|chr12:81292342:81292524:+	0	+
#Deleted in new
chr12	81292393	81292524	ENSG00000257467.5|PPFIA2-AS1|lncRNA|chr12:81292393:81292524:+	0	+
#Deleted in new
chr12	81292457	81292524	ENSG00000257467.5|PPFIA2-AS1|lncRNA|chr12:81292457:81292524:+	0	+
#Deleted in new
chr12	81296633	81296769	ENSG00000257467.5|PPFIA2-AS1|lncRNA|chr12:81296633:81296769:+	0	+
#Deleted in new
chr12	81350432	81350486	ENSG00000139220.16|PPFIA2|pc|chr12:81350432:81350486:-	0	-
#Duplicated in new
chr12	8138139	8138548	ENSG00000284697.1|AC006511.5|lncRNA|chr12:8138139:8138548:+	0	+
#Duplicated in new
chr12	8138139	8138604	ENSG00000111729.14|CLEC4A|pc|chr12:8138139:8138604:+	0	+
#Duplicated in new
chr12	8138139	8138607	ENSG00000111729.14|CLEC4A|pc|chr12:8138139:8138607:+	0	+
#Deleted in new
chr12	81424848	81424957	ENSG00000139220.16|PPFIA2|pc|chr12:81424848:81424957:-	0	-
#Deleted in new
chr1	2814431	2814688	ENSG00000231630.1|AL592464.1|lncRNA|chr1:2814431:2814688:-	0	-
#Deleted in new
chr12	81471161	81471308	ENSG00000258162.2|AC069228.1|lncRNA|chr12:81471161:81471308:+	0	+
#Deleted in new
chr12	81472519	81472954	ENSG00000258162.2|AC069228.1|lncRNA|chr12:81472519:81472954:+	0	+
#Deleted in new
chr1	2814826	2814998	ENSG00000231630.1|AL592464.1|lncRNA|chr1:2814826:2814998:-	0	-
#Deleted in new
chr12	81512283	81512345	ENSG00000139220.16|PPFIA2|pc|chr12:81512283:81512345:-	0	-
#Deleted in new
chr12	81512283	81512362	ENSG00000139220.16|PPFIA2|pc|chr12:81512283:81512362:-	0	-
#Deleted in new
chr12	81512283	81512384	ENSG00000139220.16|PPFIA2|pc|chr12:81512283:81512384:-	0	-
#Deleted in new
chr12	81535421	81535511	ENSG00000139220.16|PPFIA2|pc|chr12:81535421:81535511:-	0	-
#Deleted in new
chr12	8157013	8157092	ENSG00000284393.1|AC092111.3|pc|chr12:8157013:8157092:+	0	+
#Deleted in new
chr12	8157033	8157092	ENSG00000196946.10|ZNF705A|pc|chr12:8157033:8157092:+	0	+
#Deleted in new
chr12	81675485	81675652	ENSG00000139220.16|PPFIA2|pc|chr12:81675485:81675652:-	0	-
#Deleted in new
chr12	81687410	81687560	ENSG00000139220.16|PPFIA2|pc|chr12:81687410:81687560:-	0	-
#Deleted in new
chr12	8168841	8168886	ENSG00000196946.10|ZNF705A|pc|chr12:8168841:8168886:+	0	+
#Deleted in new
chr12	8172536	8172637	ENSG00000196946.10|ZNF705A|pc|chr12:8172536:8172637:+	0	+
#Deleted in new
chr12	8172554	8172637	ENSG00000196946.10|ZNF705A|pc|chr12:8172554:8172637:+	0	+
#Deleted in new
chr12	8172554	8172637	ENSG00000284393.1|AC092111.3|pc|chr12:8172554:8172637:+	0	+
#Deleted in new
chr12	8175856	8175942	ENSG00000196946.10|ZNF705A|pc|chr12:8175856:8175942:+	0	+
#Deleted in new
chr12	8175859	8175942	ENSG00000196946.10|ZNF705A|pc|chr12:8175859:8175942:+	0	+
#Split in new
chr12	8176998	8179942	ENSG00000196946.10|ZNF705A|pc|chr12:8176998:8179942:+	0	+
#Split in new
chr12	8176998	8180046	ENSG00000196946.10|ZNF705A|pc|chr12:8176998:8180046:+	0	+
#Deleted in new
chr12	8180208	8180752	ENSG00000226711.6|FAM66C|lncRNA|chr12:8180208:8180752:+	0	+
#Deleted in new
chr12	8180221	8180752	ENSG00000226711.6|FAM66C|lncRNA|chr12:8180221:8180752:+	0	+
#Deleted in new
chr12	8180268	8180752	ENSG00000226711.6|FAM66C|lncRNA|chr12:8180268:8180752:+	0	+
#Deleted in new
chr12	8187731	8188225	ENSG00000226711.6|FAM66C|lncRNA|chr12:8187731:8188225:+	0	+
#Deleted in new
chr12	8188471	8188535	ENSG00000226711.6|FAM66C|lncRNA|chr12:8188471:8188535:+	0	+
#Deleted in new
chr12	8188471	8188537	ENSG00000196946.10|ZNF705A|pc|chr12:8188471:8188537:+	0	+
#Deleted in new
chr12	8188471	8188645	ENSG00000226711.6|FAM66C|lncRNA|chr12:8188471:8188645:+	0	+
#Deleted in new
chr12	8188484	8188535	ENSG00000226711.6|FAM66C|lncRNA|chr12:8188484:8188535:+	0	+
#Deleted in new
chr12	8193519	8193655	ENSG00000226711.6|FAM66C|lncRNA|chr12:8193519:8193655:+	0	+
#Deleted in new
chr12	8193530	8193655	ENSG00000226711.6|FAM66C|lncRNA|chr12:8193530:8193655:+	0	+
#Deleted in new
chr12	8194202	8194481	ENSG00000226711.6|FAM66C|lncRNA|chr12:8194202:8194481:+	0	+
#Deleted in new
chr12	8194203	8194481	ENSG00000226711.6|FAM66C|lncRNA|chr12:8194203:8194481:+	0	+
#Deleted in new
chr12	8194298	8194327	ENSG00000226711.6|FAM66C|lncRNA|chr12:8194298:8194327:+	0	+
#Deleted in new
chr12	8194419	8194481	ENSG00000226711.6|FAM66C|lncRNA|chr12:8194419:8194481:+	0	+
#Deleted in new
chr12	8194429	8194481	ENSG00000226711.6|FAM66C|lncRNA|chr12:8194429:8194481:+	0	+
#Deleted in new
chr12	8194712	8194796	ENSG00000226711.6|FAM66C|lncRNA|chr12:8194712:8194796:+	0	+
#Deleted in new
chr12	8194728	8194796	ENSG00000226711.6|FAM66C|lncRNA|chr12:8194728:8194796:+	0	+
#Deleted in new
chr12	8194932	8195276	ENSG00000226711.6|FAM66C|lncRNA|chr12:8194932:8195276:+	0	+
#Deleted in new
chr12	8195276	8195412	ENSG00000226711.6|FAM66C|lncRNA|chr12:8195276:8195412:+	0	+
#Deleted in new
chr12	8195276	8195652	ENSG00000226711.6|FAM66C|lncRNA|chr12:8195276:8195652:+	0	+
#Deleted in new
chr12	81954247	81954480	ENSG00000257747.1|LINC02426|lncRNA|chr12:81954247:81954480:+	0	+
#Deleted in new
chr12	8196256	8196518	ENSG00000226711.6|FAM66C|lncRNA|chr12:8196256:8196518:+	0	+
#Partially deleted in new
chr12	81992431	81993133	ENSG00000257747.1|LINC02426|lncRNA|chr12:81992431:81993133:+	0	+
#Deleted in new
chr1	28199455	28199574	ENSG00000126698.10|DNAJC8|pc|chr1:28199455:28199574:-	0	-
#Deleted in new
chr12	8204057	8204128	ENSG00000226711.6|FAM66C|lncRNA|chr12:8204057:8204128:+	0	+
#Deleted in new
chr12	8204057	8204175	ENSG00000226711.6|FAM66C|lncRNA|chr12:8204057:8204175:+	0	+
#Partially deleted in new
chr12	8204057	8204386	ENSG00000226711.6|FAM66C|lncRNA|chr12:8204057:8204386:+	0	+
#Deleted in new
chr12	8215805	8216035	ENSG00000226711.6|FAM66C|lncRNA|chr12:8215805:8216035:+	0	+
#Deleted in new
chr12	8215805	8216151	ENSG00000226711.6|FAM66C|lncRNA|chr12:8215805:8216151:+	0	+
#Deleted in new
chr12	8217757	8221115	ENSG00000275367.1|AC092111.1|lncRNA|chr12:8217757:8221115:+	0	+
#Deleted in new
chr12	8225835	8225992	ENSG00000171847.10|FAM90A1|pc|chr12:8225835:8225992:-	0	-
#Deleted in new
chr12	8225835	8226014	ENSG00000171847.10|FAM90A1|pc|chr12:8225835:8226014:-	0	-
#Deleted in new
chr12	8226271	8226478	ENSG00000171847.10|FAM90A1|pc|chr12:8226271:8226478:-	0	-
#Deleted in new
chr12	8227479	8227587	ENSG00000171847.10|FAM90A1|pc|chr12:8227479:8227587:-	0	-
#Deleted in new
chr12	8227479	8227601	ENSG00000171847.10|FAM90A1|pc|chr12:8227479:8227601:-	0	-
#Deleted in new
chr12	8227479	8227618	ENSG00000171847.10|FAM90A1|pc|chr12:8227479:8227618:-	0	-
#Deleted in new
chr1	28230130	28230252	ENSG00000126698.10|DNAJC8|pc|chr1:28230130:28230252:-	0	-
#Deleted in new
chr12	82308250	82308315	ENSG00000133773.11|CCDC59|pc|chr12:82308250:82308315:-	0	-
#Partially deleted in new
chr12	82354494	82356121	ENSG00000133773.11|CCDC59|pc|chr12:82354494:82356121:-	0	-
#Deleted in new
chr12	82369448	82369560	ENSG00000127720.7|METTL25|pc|chr12:82369448:82369560:+	0	+
#Deleted in new
chr12	82374026	82374310	ENSG00000127720.7|METTL25|pc|chr12:82374026:82374310:+	0	+
#Deleted in new
chr12	8237774	8238173	ENSG00000215241.3|LINC02449|lncRNA|chr12:8237774:8238173:+	0	+
#Deleted in new
chr1	28239508	28241453	ENSG00000270605.1|AL353622.1|lncRNA|chr1:28239508:28241453:-	0	-
#Partially deleted in new
chr12	82438717	82439087	ENSG00000127720.7|METTL25|pc|chr12:82438717:82439087:+	0	+
#Deleted in new
chr1	28246588	28246906	ENSG00000130770.17|ATPIF1|pc|chr1:28246588:28246906:+	0	+
#Deleted in new
chr12	82481117	82481480	ENSG00000258170.1|AC089998.4|lncRNA|chr12:82481117:82481480:-	0	-
#Deleted in new
chr12	82481959	82482028	ENSG00000258170.1|AC089998.4|lncRNA|chr12:82481959:82482028:-	0	-
#Deleted in new
chr12	82506100	82506188	ENSG00000257837.1|AC089998.2|lncRNA|chr12:82506100:82506188:-	0	-
#Deleted in new
chr12	82760871	82760936	ENSG00000179104.8|TMTC2|pc|chr12:82760871:82760936:+	0	+
#Deleted in new
chr12	8295985	8297618	ENSG00000226091.7|LINC00937|lncRNA|chr12:8295985:8297618:-	0	-
#Deleted in new
chr12	8316355	8316539	ENSG00000226091.7|LINC00937|lncRNA|chr12:8316355:8316539:-	0	-
#Deleted in new
chr12	8321875	8322088	ENSG00000256101.5|AC092745.1|lncRNA|chr12:8321875:8322088:+	0	+
#Deleted in new
chr12	8321952	8322088	ENSG00000256101.5|AC092745.1|lncRNA|chr12:8321952:8322088:+	0	+
#Deleted in new
chr12	8322860	8323108	ENSG00000256101.5|AC092745.1|lncRNA|chr12:8322860:8323108:+	0	+
#Deleted in new
chr12	8323552	8323724	ENSG00000256101.5|AC092745.1|lncRNA|chr12:8323552:8323724:+	0	+
#Deleted in new
chr12	8329396	8329614	ENSG00000256101.5|AC092745.1|lncRNA|chr12:8329396:8329614:+	0	+
#Partially deleted in new
chr1	28335793	28335964	ENSG00000130772.13|MED18|pc|chr1:28335793:28335964:+	0	+
#Deleted in new
chr12	8356962	8357141	ENSG00000226091.7|LINC00937|lncRNA|chr12:8356962:8357141:-	0	-
#Deleted in new
chr12	8370212	8370429	ENSG00000226091.7|LINC00937|lncRNA|chr12:8370212:8370429:-	0	-
#Deleted in new
chr12	8371309	8371440	ENSG00000226091.7|LINC00937|lncRNA|chr12:8371309:8371440:-	0	-
#Deleted in new
chr12	8374416	8374513	ENSG00000226091.7|LINC00937|lncRNA|chr12:8374416:8374513:-	0	-
#Deleted in new
chr12	8384104	8384421	ENSG00000226091.7|LINC00937|lncRNA|chr12:8384104:8384421:-	0	-
#Deleted in new
chr12	8384116	8384421	ENSG00000226091.7|LINC00937|lncRNA|chr12:8384116:8384421:-	0	-
#Deleted in new
chr12	8396422	8396495	ENSG00000226091.7|LINC00937|lncRNA|chr12:8396422:8396495:-	0	-
#Deleted in new
chr12	8396422	8396803	ENSG00000226091.7|LINC00937|lncRNA|chr12:8396422:8396803:-	0	-
#Deleted in new
chr1	28432930	28433046	ENSG00000204138.12|PHACTR4|pc|chr1:28432930:28433046:+	0	+
#Partially deleted in new
chr12	84880844	84884040	ENSG00000072041.16|SLC6A15|pc|chr12:84880844:84884040:-	0	-
#Deleted in new
chr1	28489773	28489894	ENSG00000204138.12|PHACTR4|pc|chr1:28489773:28489894:+	0	+
#Deleted in new
chr1	28494229	28494322	ENSG00000204138.12|PHACTR4|pc|chr1:28494229:28494322:+	0	+
#Partially deleted in new
chr1	28496533	28500369	ENSG00000204138.12|PHACTR4|pc|chr1:28496533:28500369:+	0	+
#Deleted in new
chr12	85014310	85014555	ENSG00000231738.10|TSPAN19|pc|chr12:85014310:85014555:-	0	-
#Deleted in new
chr12	85014316	85014555	ENSG00000231738.10|TSPAN19|pc|chr12:85014316:85014555:-	0	-
#Partially deleted in new
chr12	85014317	85017599	ENSG00000231738.10|TSPAN19|pc|chr12:85014317:85017599:-	0	-
#Deleted in new
chr12	85015887	85015971	ENSG00000231738.10|TSPAN19|pc|chr12:85015887:85015971:-	0	-
#Deleted in new
chr12	85015887	85016301	ENSG00000231738.10|TSPAN19|pc|chr12:85015887:85016301:-	0	-
#Deleted in new
chr12	85023325	85023400	ENSG00000231738.10|TSPAN19|pc|chr12:85023325:85023400:-	0	-
#Deleted in new
chr12	85024651	85024772	ENSG00000231738.10|TSPAN19|pc|chr12:85024651:85024772:-	0	-
#Deleted in new
chr12	85035132	85035256	ENSG00000231738.10|TSPAN19|pc|chr12:85035132:85035256:-	0	-
#Deleted in new
chr1	28506350	28508160	ENSG00000242125.3|SNHG3|lncRNA|chr1:28506350:28508160:+	0	+
#Deleted in new
chr1	28508127	28508160	ENSG00000180198.15|RCC1|pc|chr1:28508127:28508160:+	0	+
#Deleted in new
chr1	28508127	28508160	ENSG00000242125.3|SNHG3|lncRNA|chr1:28508127:28508160:+	0	+
#Deleted in new
chr1	28508127	28508270	ENSG00000242125.3|SNHG3|lncRNA|chr1:28508127:28508270:+	0	+
#Deleted in new
chr1	28508829	28508901	ENSG00000180198.15|RCC1|pc|chr1:28508829:28508901:+	0	+
#Deleted in new
chr1	28508829	28508905	ENSG00000180198.15|RCC1|pc|chr1:28508829:28508905:+	0	+
#Deleted in new
chr1	28508829	28509633	ENSG00000242125.3|SNHG3|lncRNA|chr1:28508829:28509633:+	0	+
#Deleted in new
chr1	28508829	28510892	ENSG00000242125.3|SNHG3|lncRNA|chr1:28508829:28510892:+	0	+
#Deleted in new
chr12	8509474	8509551	ENSG00000166527.7|CLEC4D|pc|chr12:8509474:8509551:+	0	+
#Deleted in new
chr1	28510076	28510104	ENSG00000180198.15|RCC1|pc|chr1:28510076:28510104:+	0	+
#Deleted in new
chr12	85159514	85159538	ENSG00000133640.18|LRRIQ1|pc|chr12:85159514:85159538:+	0	+
#Deleted in new
chr12	85318059	85318115	ENSG00000258815.1|AC131532.1|lncRNA|chr12:85318059:85318115:+	0	+
#Deleted in new
chr12	85318957	85318979	ENSG00000258815.1|AC131532.1|lncRNA|chr12:85318957:85318979:+	0	+
#Partially deleted in new
chr12	8538953	8539306	ENSG00000166523.7|CLEC4E|pc|chr12:8538953:8539306:-	0	-
#Deleted in new
chr1	28544459	28546542	ENSG00000279443.1|AL513497.1|lncRNA|chr1:28544459:28546542:+	0	+
#Deleted in new
chr12	8548360	8548661	ENSG00000255801.1|AC092746.1|lncRNA|chr12:8548360:8548661:-	0	-
#Deleted in new
chr12	8551999	8552140	ENSG00000255801.1|AC092746.1|lncRNA|chr12:8551999:8552140:-	0	-
#Deleted in new
chr12	8567493	8567613	ENSG00000255801.1|AC092746.1|lncRNA|chr12:8567493:8567613:-	0	-
#Deleted in new
chr1	28574588	28574718	ENSG00000180098.9|TRNAU1AP|pc|chr1:28574588:28574718:+	0	+
#Partially deleted in new
chr1	28577499	28578545	ENSG00000180098.9|TRNAU1AP|pc|chr1:28577499:28578545:+	0	+
#Partially deleted in new
chr1	28578537	28578680	ENSG00000197989.13|SNHG12|lncRNA|chr1:28578537:28578680:-	0	-
#Partially deleted in new
chr1	28578538	28578680	ENSG00000197989.13|SNHG12|lncRNA|chr1:28578538:28578680:-	0	-
#Partially deleted in new
chr1	28578539	28578680	ENSG00000197989.13|SNHG12|lncRNA|chr1:28578539:28578680:-	0	-
#Partially deleted in new
chr1	28578540	28578680	ENSG00000197989.13|SNHG12|lncRNA|chr1:28578540:28578680:-	0	-
#Partially deleted in new
chr1	28578545	28578680	ENSG00000197989.13|SNHG12|lncRNA|chr1:28578545:28578680:-	0	-
#Duplicated in new
chr1	28580559	28581010	ENSG00000197989.13|SNHG12|lncRNA|chr1:28580559:28581010:-	0	-
#Split in new
chr1	28580559	28581871	ENSG00000197989.13|SNHG12|lncRNA|chr1:28580559:28581871:-	0	-
#Deleted in new
chr1	28581589	28581663	ENSG00000197989.13|SNHG12|lncRNA|chr1:28581589:28581663:-	0	-
#Deleted in new
chr1	28581589	28581818	ENSG00000197989.13|SNHG12|lncRNA|chr1:28581589:28581818:-	0	-
#Deleted in new
chr1	28581589	28581834	ENSG00000197989.13|SNHG12|lncRNA|chr1:28581589:28581834:-	0	-
#Deleted in new
chr1	28581589	28581842	ENSG00000197989.13|SNHG12|lncRNA|chr1:28581589:28581842:-	0	-
#Deleted in new
chr1	28581589	28581853	ENSG00000197989.13|SNHG12|lncRNA|chr1:28581589:28581853:-	0	-
#Deleted in new
chr1	28581589	28581857	ENSG00000197989.13|SNHG12|lncRNA|chr1:28581589:28581857:-	0	-
#Deleted in new
chr1	28581589	28581872	ENSG00000197989.13|SNHG12|lncRNA|chr1:28581589:28581872:-	0	-
#Deleted in new
chr1	28582089	28582983	ENSG00000197989.13|SNHG12|lncRNA|chr1:28582089:28582983:-	0	-
#Deleted in new
chr1	28589322	28589774	ENSG00000120656.11|TAF12|pc|chr1:28589322:28589774:-	0	-
#Deleted in new
chr1	28590276	28590386	ENSG00000120656.11|TAF12|pc|chr1:28590276:28590386:-	0	-
#Deleted in new
chr12	86001493	86002478	ENSG00000182050.13|MGAT4C|pc|chr12:86001493:86002478:-	0	-
#Deleted in new
chr12	86002351	86002478	ENSG00000182050.13|MGAT4C|pc|chr12:86002351:86002478:-	0	-
#Deleted in new
chr12	86013680	86013758	ENSG00000182050.13|MGAT4C|pc|chr12:86013680:86013758:-	0	-
#Deleted in new
chr12	86013726	86013758	ENSG00000182050.13|MGAT4C|pc|chr12:86013726:86013758:-	0	-
#Deleted in new
chr12	86022448	86022544	ENSG00000182050.13|MGAT4C|pc|chr12:86022448:86022544:-	0	-
#Deleted in new
chr12	86028087	86028207	ENSG00000182050.13|MGAT4C|pc|chr12:86028087:86028207:-	0	-
#Deleted in new
chr12	86028103	86028204	ENSG00000182050.13|MGAT4C|pc|chr12:86028103:86028204:-	0	-
#Deleted in new
chr12	86068090	86068507	ENSG00000182050.13|MGAT4C|pc|chr12:86068090:86068507:-	0	-
#Deleted in new
chr12	8631544	8632259	ENSG00000280345.1|AC092184.1|lncRNA|chr12:8631544:8632259:-	0	-
#Deleted in new
chr12	8641245	8641364	ENSG00000197614.10|MFAP5|pc|chr12:8641245:8641364:-	0	-
#Partially deleted in new
chr1	28646090	28646389	ENSG00000229388.1|LINC01715|lncRNA|chr1:28646090:28646389:+	0	+
#Deleted in new
chr12	86495250	86495315	ENSG00000182050.13|MGAT4C|pc|chr12:86495250:86495315:-	0	-
#Deleted in new
chr12	86599577	86599661	ENSG00000182050.13|MGAT4C|pc|chr12:86599577:86599661:-	0	-
#Deleted in new
chr12	86599577	86599661	ENSG00000258185.2|AC010196.1|lncRNA|chr12:86599577:86599661:-	0	-
#Deleted in new
chr12	86601227	86601304	ENSG00000182050.13|MGAT4C|pc|chr12:86601227:86601304:-	0	-
#Deleted in new
chr12	8664010	8664115	ENSG00000255829.1|AC092490.2|lncRNA|chr12:8664010:8664115:+	0	+
#Deleted in new
chr12	8664036	8664115	ENSG00000255829.1|AC092490.2|lncRNA|chr12:8664036:8664115:+	0	+
#Deleted in new
chr12	8668628	8669011	ENSG00000255829.1|AC092490.2|lncRNA|chr12:8668628:8669011:+	0	+
#Deleted in new
chr12	8668632	8668980	ENSG00000255829.1|AC092490.2|lncRNA|chr12:8668632:8668980:+	0	+
#Deleted in new
chr12	8681599	8681818	ENSG00000166532.15|RIMKLB|pc|chr12:8681599:8681818:+	0	+
#Deleted in new
chr12	8681690	8681818	ENSG00000166532.15|RIMKLB|pc|chr12:8681690:8681818:+	0	+
#Deleted in new
chr12	87041915	87042423	ENSG00000280049.1|AC079597.1|lncRNA|chr12:87041915:87042423:+	0	+
#Deleted in new
chr1	28739090	28739200	ENSG00000198492.15|YTHDF2|pc|chr1:28739090:28739200:+	0	+
#Deleted in new
chr12	87817111	87817238	ENSG00000257940.1|AC079598.1|lncRNA|chr12:87817111:87817238:+	0	+
#Deleted in new
chr12	87817441	87817831	ENSG00000257940.1|AC079598.1|lncRNA|chr12:87817441:87817831:+	0	+
#Deleted in new
chr12	8782911	8783085	ENSG00000166532.15|RIMKLB|pc|chr12:8782911:8783085:+	0	+
#Deleted in new
chr12	8782911	8783095	ENSG00000166532.15|RIMKLB|pc|chr12:8782911:8783095:+	0	+
#Deleted in new
chr12	8788256	8788786	ENSG00000249790.2|AC092490.1|lncRNA|chr12:8788256:8788786:+	0	+
#Deleted in new
chr12	8788273	8788760	ENSG00000249790.2|AC092490.1|lncRNA|chr12:8788273:8788760:+	0	+
#Deleted in new
chr12	8788273	8788786	ENSG00000249790.2|AC092490.1|lncRNA|chr12:8788273:8788786:+	0	+
#Deleted in new
chr12	8789999	8790263	ENSG00000249790.2|AC092490.1|lncRNA|chr12:8789999:8790263:+	0	+
#Deleted in new
chr12	8794304	8794336	ENSG00000249790.2|AC092490.1|lncRNA|chr12:8794304:8794336:+	0	+
#Deleted in new
chr12	8794304	8794497	ENSG00000249790.2|AC092490.1|lncRNA|chr12:8794304:8794497:+	0	+
#Deleted in new
chr12	8794304	8795789	ENSG00000249790.2|AC092490.1|lncRNA|chr12:8794304:8795789:+	0	+
#Deleted in new
chr12	88030177	88030237	ENSG00000165805.9|C12orf50|pc|chr12:88030177:88030237:-	0	-
#Partially deleted in new
chr12	88135657	88136786	ENSG00000198707.14|CEP290|pc|chr12:88135657:88136786:-	0	-
#Deleted in new
chr12	8819815	8820073	ENSG00000256904.1|A2ML1-AS2|lncRNA|chr12:8819815:8820073:-	0	-
#Deleted in new
chr12	8820585	8820713	ENSG00000256904.1|A2ML1-AS2|lncRNA|chr12:8820585:8820713:-	0	-
#Deleted in new
chr12	8823512	8823582	ENSG00000166535.19|A2ML1|pc|chr12:8823512:8823582:+	0	+
#Deleted in new
chr12	8823719	8823882	ENSG00000166535.19|A2ML1|pc|chr12:8823719:8823882:+	0	+
#Deleted in new
chr12	8830661	8830947	ENSG00000256661.1|A2ML1-AS1|lncRNA|chr12:8830661:8830947:-	0	-
#Deleted in new
chr12	8837439	8837566	ENSG00000166535.19|A2ML1|pc|chr12:8837439:8837566:+	0	+
#Deleted in new
chr12	8839112	8839222	ENSG00000166535.19|A2ML1|pc|chr12:8839112:8839222:+	0	+
#Partially deleted in new
chr12	8841368	8841536	ENSG00000166535.19|A2ML1|pc|chr12:8841368:8841536:+	0	+
#Deleted in new
chr12	8848719	8848795	ENSG00000166535.19|A2ML1|pc|chr12:8848719:8848795:+	0	+
#Deleted in new
chr12	8848719	8848901	ENSG00000166535.19|A2ML1|pc|chr12:8848719:8848901:+	0	+
#Deleted in new
chr12	8848719	8848914	ENSG00000166535.19|A2ML1|pc|chr12:8848719:8848914:+	0	+
#Deleted in new
chr12	88581996	88582138	ENSG00000281333.1|AC024941.2|lncRNA|chr12:88581996:88582138:+	0	+
#Deleted in new
chr12	88601861	88602195	ENSG00000278011.1|AC024941.1|lncRNA|chr12:88601861:88602195:+	0	+
#Deleted in new
chr12	8869134	8869203	ENSG00000166535.19|A2ML1|pc|chr12:8869134:8869203:+	0	+
#Deleted in new
chr12	8874970	8875012	ENSG00000166535.19|A2ML1|pc|chr12:8874970:8875012:+	0	+
#Deleted in new
chr12	8875460	8875814	ENSG00000166535.19|A2ML1|pc|chr12:8875460:8875814:+	0	+
#Deleted in new
chr12	8876057	8876456	ENSG00000166535.19|A2ML1|pc|chr12:8876057:8876456:+	0	+
#Deleted in new
chr12	8876057	8876785	ENSG00000166535.19|A2ML1|pc|chr12:8876057:8876785:+	0	+
#Partially deleted in new
chr1	28877020	28877336	ENSG00000233427.1|AL009181.1|lncRNA|chr1:28877020:28877336:-	0	-
#Deleted in new
chr12	8880523	8880616	ENSG00000166535.19|A2ML1|pc|chr12:8880523:8880616:+	0	+
#Deleted in new
chr12	8886506	8887001	ENSG00000166535.19|A2ML1|pc|chr12:8886506:8887001:+	0	+
#Partially deleted in new
chr12	89351496	89351582	ENSG00000139318.7|DUSP6|pc|chr12:89351496:89351582:-	0	-
#Partially deleted in new
chr12	89425160	89429460	ENSG00000139323.13|POC1B|pc|chr12:89425160:89429460:-	0	-
#Deleted in new
chr12	89460709	89461306	ENSG00000139323.13|POC1B|pc|chr12:89460709:89461306:-	0	-
#Partially deleted in new
chr12	8946715	8946824	ENSG00000003056.7|M6PR|pc|chr12:8946715:8946824:-	0	-
#Deleted in new
chr12	89561128	89561275	ENSG00000258302.2|AC025034.1|lncRNA|chr12:89561128:89561275:+	0	+
#Deleted in new
chr12	89593314	89594878	ENSG00000258302.2|AC025034.1|lncRNA|chr12:89593314:89594878:+	0	+
#Deleted in new
chr12	8970428	8970526	ENSG00000139187.9|KLRG1|pc|chr12:8970428:8970526:+	0	+
#Deleted in new
chr12	8971077	8971226	ENSG00000139187.9|KLRG1|pc|chr12:8971077:8971226:+	0	+
#Deleted in new
chr12	8987174	8987481	ENSG00000257105.1|AC006581.1|lncRNA|chr12:8987174:8987481:-	0	-
#Partially deleted in new
chr12	8988311	8988430	ENSG00000257105.1|AC006581.1|lncRNA|chr12:8988311:8988430:-	0	-
#Deleted in new
chr12	89921066	89921169	ENSG00000258216.5|AC084200.1|lncRNA|chr12:89921066:89921169:+	0	+
#Partially deleted in new
chr12	89948160	89948248	ENSG00000257725.1|LINC02399|lncRNA|chr12:89948160:89948248:+	0	+
#Deleted in new
chr12	8996496	8996566	ENSG00000257105.1|AC006581.1|lncRNA|chr12:8996496:8996566:-	0	-
#Deleted in new
chr12	90280893	90280952	ENSG00000258183.5|LINC02392|lncRNA|chr12:90280893:90280952:+	0	+
#Deleted in new
chr12	90282460	90282558	ENSG00000258183.5|LINC02392|lncRNA|chr12:90282460:90282558:+	0	+
#Deleted in new
chr12	90290783	90290881	ENSG00000258183.5|LINC02392|lncRNA|chr12:90290783:90290881:+	0	+
#Deleted in new
chr12	90295356	90295492	ENSG00000258183.5|LINC02392|lncRNA|chr12:90295356:90295492:+	0	+
#Deleted in new
chr12	90295356	90295675	ENSG00000258183.5|LINC02392|lncRNA|chr12:90295356:90295675:+	0	+
#Deleted in new
chr12	90296084	90296247	ENSG00000258183.5|LINC02392|lncRNA|chr12:90296084:90296247:+	0	+
#Deleted in new
chr12	90300198	90300340	ENSG00000258183.5|LINC02392|lncRNA|chr12:90300198:90300340:+	0	+
#Deleted in new
chr12	90617758	90618028	ENSG00000257995.1|AC084365.1|lncRNA|chr12:90617758:90618028:-	0	-
#Deleted in new
chr12	90622782	90622822	ENSG00000257995.1|AC084365.1|lncRNA|chr12:90622782:90622822:-	0	-
#Deleted in new
chr12	9064267	9065070	ENSG00000214851.4|LINC00612|lncRNA|chr12:9064267:9065070:-	0	-
#Deleted in new
chr12	9065176	9065228	ENSG00000245105.2|A2M-AS1|lncRNA|chr12:9065176:9065228:+	0	+
#Deleted in new
chr12	9065825	9066060	ENSG00000245105.2|A2M-AS1|lncRNA|chr12:9065825:9066060:+	0	+
#Partially deleted in new
chr12	9066155	9068060	ENSG00000245105.2|A2M-AS1|lncRNA|chr12:9066155:9068060:+	0	+
#Deleted in new
chr12	90809275	90810017	ENSG00000257787.1|AC112481.1|lncRNA|chr12:90809275:90810017:+	0	+
#Deleted in new
chr12	90905621	90905864	ENSG00000197651.4|CCER1|pc|chr12:90905621:90905864:-	0	-
#Deleted in new
chr12	90918022	90918050	ENSG00000196243.5|LINC00615|lncRNA|chr12:90918022:90918050:+	0	+
#Deleted in new
chr12	90946423	90946491	ENSG00000196243.5|LINC00615|lncRNA|chr12:90946423:90946491:+	0	+
#Partially deleted in new
chr12	91150782	91151792	ENSG00000011465.16|DCN|pc|chr12:91150782:91151792:-	0	-
#Deleted in new
chr12	91169633	91169897	ENSG00000011465.16|DCN|pc|chr12:91169633:91169897:-	0	-
#Deleted in new
chr12	91172141	91172868	ENSG00000011465.16|DCN|pc|chr12:91172141:91172868:-	0	-
#Deleted in new
chr12	91172527	91172868	ENSG00000011465.16|DCN|pc|chr12:91172527:91172868:-	0	-
#Deleted in new
chr12	91180186	91180365	ENSG00000011465.16|DCN|pc|chr12:91180186:91180365:-	0	-
#Deleted in new
chr12	91180447	91180481	ENSG00000011465.16|DCN|pc|chr12:91180447:91180481:-	0	-
#Partially deleted in new
chr12	912076	913452	ENSG00000002016.17|RAD52|pc|chr12:912076:913452:-	0	-
#Deleted in new
chr1	29123855	29123935	ENSG00000253304.1|TMEM200B|pc|chr1:29123855:29123935:-	0	-
#Deleted in new
chr12	91362195	91362413	ENSG00000258100.1|AC025035.1|lncRNA|chr12:91362195:91362413:+	0	+
#Deleted in new
chr12	91367930	91368606	ENSG00000258100.1|AC025035.1|lncRNA|chr12:91367930:91368606:+	0	+
#Deleted in new
chr1	29144493	29144549	ENSG00000225750.1|AL357500.1|lncRNA|chr1:29144493:29144549:-	0	-
#Deleted in new
chr1	29146907	29146994	ENSG00000225750.1|AL357500.1|lncRNA|chr1:29146907:29146994:-	0	-
#Deleted in new
chr12	9162280	9162444	ENSG00000126838.9|PZP|pc|chr12:9162280:9162444:-	0	-
#Deleted in new
chr12	91634886	91635644	ENSG00000277738.1|AC126175.1|lncRNA|chr12:91634886:91635644:+	0	+
#Deleted in new
chr12	9166980	9167497	ENSG00000126838.9|PZP|pc|chr12:9166980:9167497:-	0	-
#Deleted in new
chr12	9167500	9167531	ENSG00000126838.9|PZP|pc|chr12:9167500:9167531:-	0	-
#Deleted in new
chr12	9167500	9167533	ENSG00000126838.9|PZP|pc|chr12:9167500:9167533:-	0	-
#Deleted in new
chr12	91680130	91680293	ENSG00000258125.1|AC025254.1|lncRNA|chr12:91680130:91680293:+	0	+
#Deleted in new
chr12	91680789	91680873	ENSG00000258125.1|AC025254.1|lncRNA|chr12:91680789:91680873:+	0	+
#Deleted in new
chr12	9168455	9168974	ENSG00000126838.9|PZP|pc|chr12:9168455:9168974:-	0	-
#Deleted in new
chr12	9168868	9168974	ENSG00000126838.9|PZP|pc|chr12:9168868:9168974:-	0	-
#Duplicated in new
chr12	9169429	9169591	ENSG00000126838.9|PZP|pc|chr12:9169429:9169591:-	0	-
#Deleted in new
chr12	9169781	9170097	ENSG00000126838.9|PZP|pc|chr12:9169781:9170097:-	0	-
#Deleted in new
chr12	9170048	9170118	ENSG00000126838.9|PZP|pc|chr12:9170048:9170118:-	0	-
#Deleted in new
chr12	91901457	91901489	ENSG00000257863.1|AC090049.1|lncRNA|chr12:91901457:91901489:+	0	+
#Deleted in new
chr12	91901834	91901921	ENSG00000257863.1|AC090049.1|lncRNA|chr12:91901834:91901921:+	0	+
#Deleted in new
chr12	9201326	9201347	ENSG00000126838.9|PZP|pc|chr12:9201326:9201347:-	0	-
#Deleted in new
chr12	92044394	92044548	ENSG00000257242.7|LINC01619|lncRNA|chr12:92044394:92044548:-	0	-
#Deleted in new
chr12	9208258	9208365	ENSG00000126838.9|PZP|pc|chr12:9208258:9208365:-	0	-
#Deleted in new
chr12	9208258	9208370	ENSG00000126838.9|PZP|pc|chr12:9208258:9208370:-	0	-
#Deleted in new
chr12	92136964	92137021	ENSG00000257242.7|LINC01619|lncRNA|chr12:92136964:92137021:-	0	-
#Partially deleted in new
chr12	92146446	92146918	ENSG00000245904.3|AC025164.2|lncRNA|chr12:92146446:92146918:+	0	+
#Deleted in new
chr12	92146661	92146762	ENSG00000245904.3|AC025164.2|lncRNA|chr12:92146661:92146762:+	0	+
#Deleted in new
chr12	92149296	92149562	ENSG00000245904.3|AC025164.2|lncRNA|chr12:92149296:92149562:+	0	+
#Partially deleted in new
chr12	92167118	92167560	ENSG00000245904.3|AC025164.2|lncRNA|chr12:92167118:92167560:+	0	+
#Partially deleted in new
chr12	92184125	92189660	ENSG00000245904.3|AC025164.2|lncRNA|chr12:92184125:92189660:+	0	+
#Deleted in new
chr1	29220716	29220921	ENSG00000116353.15|MECR|pc|chr1:29220716:29220921:-	0	-
#Deleted in new
chr1	29220833	29220921	ENSG00000116353.15|MECR|pc|chr1:29220833:29220921:-	0	-
#Deleted in new
chr1	29220837	29220912	ENSG00000116353.15|MECR|pc|chr1:29220837:29220912:-	0	-
#Deleted in new
chr1	29220837	29220921	ENSG00000116353.15|MECR|pc|chr1:29220837:29220921:-	0	-
#Deleted in new
chr1	29220882	29220921	ENSG00000116353.15|MECR|pc|chr1:29220882:29220921:-	0	-
#Deleted in new
chr1	29221074	29221200	ENSG00000116353.15|MECR|pc|chr1:29221074:29221200:-	0	-
#Deleted in new
chr1	29223932	29224264	ENSG00000237934.1|AL590729.1|lncRNA|chr1:29223932:29224264:+	0	+
#Deleted in new
chr1	29224464	29224611	ENSG00000237934.1|AL590729.1|lncRNA|chr1:29224464:29224611:+	0	+
#Deleted in new
chr1	29224722	29224816	ENSG00000237934.1|AL590729.1|lncRNA|chr1:29224722:29224816:+	0	+
#Partially deleted in new
chr12	92357530	92357674	ENSG00000277851.1|LINC02391|lncRNA|chr12:92357530:92357674:-	0	-
#Partially deleted in new
chr12	92421530	92423949	ENSG00000257127.6|CLLU1|pc|chr12:92421530:92423949:+	0	+
#Deleted in new
chr12	92422546	92422636	ENSG00000205057.4|CLLU1OS|pc|chr12:92422546:92422636:-	0	-
#Deleted in new
chr12	92428094	92428148	ENSG00000205057.4|CLLU1OS|pc|chr12:92428094:92428148:-	0	-
#Deleted in new
chr12	9257922	9257960	ENSG00000256427.1|AC010175.1|lncRNA|chr12:9257922:9257960:+	0	+
#Partially deleted in new
chr12	926795	926946	ENSG00000002016.17|RAD52|pc|chr12:926795:926946:-	0	-
#Partially deleted in new
chr12	926848	926946	ENSG00000002016.17|RAD52|pc|chr12:926848:926946:-	0	-
#Deleted in new
chr12	92721461	92721523	ENSG00000187510.8|PLEKHG7|pc|chr12:92721461:92721523:+	0	+
#Deleted in new
chr12	92741490	92741592	ENSG00000187510.8|PLEKHG7|pc|chr12:92741490:92741592:+	0	+
#Deleted in new
chr12	92745477	92745591	ENSG00000187510.8|PLEKHG7|pc|chr12:92745477:92745591:+	0	+
#Deleted in new
chr12	92749550	92749723	ENSG00000187510.8|PLEKHG7|pc|chr12:92749550:92749723:+	0	+
#Deleted in new
chr12	92879246	92879363	ENSG00000102189.16|EEA1|pc|chr12:92879246:92879363:-	0	-
#Partially deleted in new
chr12	92905485	92905596	ENSG00000102189.16|EEA1|pc|chr12:92905485:92905596:-	0	-
#Deleted in new
chr12	92999217	92999335	ENSG00000257345.2|LINC02413|lncRNA|chr12:92999217:92999335:+	0	+
#Deleted in new
chr12	93004513	93004598	ENSG00000257322.5|AC138123.2|lncRNA|chr12:93004513:93004598:-	0	-
#Deleted in new
chr12	93006093	93006229	ENSG00000257345.2|LINC02413|lncRNA|chr12:93006093:93006229:+	0	+
#Deleted in new
chr12	93006093	93006257	ENSG00000257345.2|LINC02413|lncRNA|chr12:93006093:93006257:+	0	+
#Deleted in new
chr12	93019410	93019820	ENSG00000257345.2|LINC02413|lncRNA|chr12:93019410:93019820:+	0	+
#Deleted in new
chr12	93096114	93096236	ENSG00000257746.1|AC138123.3|lncRNA|chr12:93096114:93096236:+	0	+
#Deleted in new
chr12	93106321	93106414	ENSG00000257746.1|AC138123.3|lncRNA|chr12:93106321:93106414:+	0	+
#Deleted in new
chr12	93179657	93180062	ENSG00000257322.5|AC138123.2|lncRNA|chr12:93179657:93180062:-	0	-
#Deleted in new
chr12	93190266	93190412	ENSG00000257322.5|AC138123.2|lncRNA|chr12:93190266:93190412:-	0	-
#Partially deleted in new
chr1	29320209	29320825	ENSG00000060656.19|PTPRU|pc|chr1:29320209:29320825:+	0	+
#Deleted in new
chr12	93215581	93215674	ENSG00000257322.5|AC138123.2|lncRNA|chr12:93215581:93215674:-	0	-
#Deleted in new
chr12	93215581	93215679	ENSG00000257322.5|AC138123.2|lncRNA|chr12:93215581:93215679:-	0	-
#Split in new
chr1	29329619	29331192	ENSG00000230523.1|LINC01756|lncRNA|chr1:29329619:29331192:-	0	-
#Deleted in new
chr12	93339638	93339736	ENSG00000257252.5|AC124947.1|lncRNA|chr12:93339638:93339736:-	0	-
#Deleted in new
chr12	93378549	93378693	ENSG00000173598.13|NUDT4|pc|chr12:93378549:93378693:+	0	+
#Deleted in new
chr12	93378549	93378790	ENSG00000173598.13|NUDT4|pc|chr12:93378549:93378790:+	0	+
#Deleted in new
chr12	93378577	93378693	ENSG00000173598.13|NUDT4|pc|chr12:93378577:93378693:+	0	+
#Deleted in new
chr12	93378577	93378790	ENSG00000173598.13|NUDT4|pc|chr12:93378577:93378790:+	0	+
#Deleted in new
chr12	93378653	93378788	ENSG00000173598.13|NUDT4|pc|chr12:93378653:93378788:+	0	+
#Deleted in new
chr12	93385122	93385162	ENSG00000173598.13|NUDT4|pc|chr12:93385122:93385162:+	0	+
#Deleted in new
chr12	93470485	93470505	ENSG00000198015.12|MRPL42|pc|chr12:93470485:93470505:+	0	+
#Deleted in new
chr12	93470485	93470590	ENSG00000198015.12|MRPL42|pc|chr12:93470485:93470590:+	0	+
#Deleted in new
chr12	93488288	93488472	ENSG00000198015.12|MRPL42|pc|chr12:93488288:93488472:+	0	+
#Partially deleted in new
chr1	29349682	29350114	ENSG00000230523.1|LINC01756|lncRNA|chr1:29349682:29350114:-	0	-
#Partially deleted in new
chr12	93500746	93501028	ENSG00000198015.12|MRPL42|pc|chr12:93500746:93501028:+	0	+
#Partially deleted in new
chr12	93501175	93502661	ENSG00000198015.12|MRPL42|pc|chr12:93501175:93502661:+	0	+
#Partially deleted in new
chr12	93501175	93516213	ENSG00000198015.12|MRPL42|pc|chr12:93501175:93516213:+	0	+
#Partially deleted in new
chr12	93501184	93502652	ENSG00000198015.12|MRPL42|pc|chr12:93501184:93502652:+	0	+
#Partially deleted in new
chr12	93501904	93502621	ENSG00000198015.12|MRPL42|pc|chr12:93501904:93502621:+	0	+
#Partially deleted in new
chr12	93542462	93545358	ENSG00000246985.7|SOCS2-AS1|lncRNA|chr12:93542462:93545358:-	0	-
#Partially deleted in new
chr12	93542463	93543305	ENSG00000246985.7|SOCS2-AS1|lncRNA|chr12:93542463:93543305:-	0	-
#Deleted in new
chr12	93545070	93545358	ENSG00000246985.7|SOCS2-AS1|lncRNA|chr12:93545070:93545358:-	0	-
#Deleted in new
chr12	93551432	93551512	ENSG00000246985.7|SOCS2-AS1|lncRNA|chr12:93551432:93551512:-	0	-
#Deleted in new
chr12	93565583	93565744	ENSG00000246985.7|SOCS2-AS1|lncRNA|chr12:93565583:93565744:-	0	-
#Deleted in new
chr12	93565612	93565744	ENSG00000246985.7|SOCS2-AS1|lncRNA|chr12:93565612:93565744:-	0	-
#Partially deleted in new
chr12	93583022	93583487	ENSG00000120833.13|SOCS2|pc|chr12:93583022:93583487:+	0	+
#Deleted in new
chr12	936806	936882	ENSG00000002016.17|RAD52|pc|chr12:936806:936882:-	0	-
#Deleted in new
chr12	93714534	93714896	ENSG00000258274.1|AC012085.2|lncRNA|chr12:93714534:93714896:-	0	-
#Deleted in new
chr12	93733558	93733654	ENSG00000169372.12|CRADD|pc|chr12:93733558:93733654:+	0	+
#Partially deleted in new
chr12	93735564	93735730	ENSG00000258274.1|AC012085.2|lncRNA|chr12:93735564:93735730:-	0	-
#Partially deleted in new
chr12	93735564	93735733	ENSG00000258274.1|AC012085.2|lncRNA|chr12:93735564:93735733:-	0	-
#Deleted in new
chr12	9375857	9376086	ENSG00000260423.1|LINC02367|lncRNA|chr12:9375857:9376086:+	0	+
#Deleted in new
chr12	93815135	93815248	ENSG00000169372.12|CRADD|pc|chr12:93815135:93815248:+	0	+
#Deleted in new
chr12	93815403	93815481	ENSG00000169372.12|CRADD|pc|chr12:93815403:93815481:+	0	+
#Deleted in new
chr12	93815407	93815481	ENSG00000169372.12|CRADD|pc|chr12:93815407:93815481:+	0	+
#Deleted in new
chr12	93815866	93816109	ENSG00000169372.12|CRADD|pc|chr12:93815866:93816109:+	0	+
#Deleted in new
chr12	93836166	93836197	ENSG00000258303.1|AC012464.2|lncRNA|chr12:93836166:93836197:+	0	+
#Deleted in new
chr12	93846483	93846527	ENSG00000169372.12|CRADD|pc|chr12:93846483:93846527:+	0	+
#Deleted in new
chr12	93859318	93859442	ENSG00000169372.12|CRADD|pc|chr12:93859318:93859442:+	0	+
#Deleted in new
chr12	93943544	93943603	ENSG00000257283.1|AC012464.1|lncRNA|chr12:93943544:93943603:-	0	-
#Partially deleted in new
chr12	93945040	93947813	ENSG00000271382.1|AC012464.3|lncRNA|chr12:93945040:93947813:+	0	+
#Deleted in new
chr12	9394530	9394657	ENSG00000260423.1|LINC02367|lncRNA|chr12:9394530:9394657:+	0	+
#Deleted in new
chr12	94402250	94402336	ENSG00000173588.14|CEP83|pc|chr12:94402250:94402336:-	0	-
#Deleted in new
chr12	94407936	94408104	ENSG00000173588.14|CEP83|pc|chr12:94407936:94408104:-	0	-
#Deleted in new
chr12	94408016	94408097	ENSG00000173588.14|CEP83|pc|chr12:94408016:94408097:-	0	-
#Deleted in new
chr12	9448294	9448878	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9448294:9448878:+	0	+
#Deleted in new
chr12	9448497	9448878	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9448497:9448878:+	0	+
#Deleted in new
chr12	94496404	94496442	ENSG00000257400.1|AC023161.1|lncRNA|chr12:94496404:94496442:-	0	-
#Deleted in new
chr12	94609788	94610035	ENSG00000057704.12|TMCC3|pc|chr12:94609788:94610035:-	0	-
#Deleted in new
chr12	9461323	9461434	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9461323:9461434:+	0	+
#Deleted in new
chr12	94613834	94613925	ENSG00000057704.12|TMCC3|pc|chr12:94613834:94613925:-	0	-
#Deleted in new
chr12	94897054	94897310	ENSG00000184752.12|NDUFA12|pc|chr12:94897054:94897310:-	0	-
#Deleted in new
chr12	94897091	94897310	ENSG00000184752.12|NDUFA12|pc|chr12:94897091:94897310:-	0	-
#Deleted in new
chr12	9490852	9490873	ENSG00000214776.11|AC092821.1|pc|chr12:9490852:9490873:+	0	+
#Deleted in new
chr12	9491447	9491616	ENSG00000214776.11|AC092821.1|pc|chr12:9491447:9491616:+	0	+
#Deleted in new
chr12	9492291	9492376	ENSG00000214776.11|AC092821.1|pc|chr12:9492291:9492376:+	0	+
#Deleted in new
chr12	94924645	94924806	ENSG00000184752.12|NDUFA12|pc|chr12:94924645:94924806:-	0	-
#Deleted in new
chr12	94928016	94928263	ENSG00000184752.12|NDUFA12|pc|chr12:94928016:94928263:-	0	-
#Deleted in new
chr12	949402	949519	ENSG00000002016.17|RAD52|pc|chr12:949402:949519:-	0	-
#Deleted in new
chr12	949402	949628	ENSG00000002016.17|RAD52|pc|chr12:949402:949628:-	0	-
#Deleted in new
chr12	949601	949626	ENSG00000002016.17|RAD52|pc|chr12:949601:949626:-	0	-
#Deleted in new
chr12	949601	949641	ENSG00000002016.17|RAD52|pc|chr12:949601:949641:-	0	-
#Deleted in new
chr12	949601	949642	ENSG00000002016.17|RAD52|pc|chr12:949601:949642:-	0	-
#Deleted in new
chr12	949601	949665	ENSG00000002016.17|RAD52|pc|chr12:949601:949665:-	0	-
#Deleted in new
chr12	949601	949667	ENSG00000002016.17|RAD52|pc|chr12:949601:949667:-	0	-
#Deleted in new
chr12	949601	949669	ENSG00000002016.17|RAD52|pc|chr12:949601:949669:-	0	-
#Deleted in new
chr12	949601	949673	ENSG00000002016.17|RAD52|pc|chr12:949601:949673:-	0	-
#Deleted in new
chr12	949601	949682	ENSG00000002016.17|RAD52|pc|chr12:949601:949682:-	0	-
#Deleted in new
chr12	949601	949722	ENSG00000002016.17|RAD52|pc|chr12:949601:949722:-	0	-
#Deleted in new
chr12	949605	949649	ENSG00000002016.17|RAD52|pc|chr12:949605:949649:-	0	-
#Deleted in new
chr12	949605	949665	ENSG00000002016.17|RAD52|pc|chr12:949605:949665:-	0	-
#Deleted in new
chr12	9497708	9497826	ENSG00000214776.11|AC092821.1|pc|chr12:9497708:9497826:+	0	+
#Deleted in new
chr12	94996903	94996976	ENSG00000184752.12|NDUFA12|pc|chr12:94996903:94996976:-	0	-
#Deleted in new
chr12	94997307	94997447	ENSG00000184752.12|NDUFA12|pc|chr12:94997307:94997447:-	0	-
#Deleted in new
chr12	9500700	9500815	ENSG00000214776.11|AC092821.1|pc|chr12:9500700:9500815:+	0	+
#Deleted in new
chr12	9517058	9517119	ENSG00000214776.11|AC092821.1|pc|chr12:9517058:9517119:+	0	+
#Deleted in new
chr12	9517672	9517818	ENSG00000214776.11|AC092821.1|pc|chr12:9517672:9517818:+	0	+
#Deleted in new
chr12	95189564	95189641	ENSG00000180263.13|FGD6|pc|chr12:95189564:95189641:-	0	-
#Deleted in new
chr12	9520134	9520231	ENSG00000214776.11|AC092821.1|pc|chr12:9520134:9520231:+	0	+
#Deleted in new
chr12	95224179	95224236	ENSG00000028203.17|VEZT|pc|chr12:95224179:95224236:+	0	+
#Deleted in new
chr12	95242163	95242264	ENSG00000028203.17|VEZT|pc|chr12:95242163:95242264:+	0	+
#Deleted in new
chr12	95242163	95242314	ENSG00000028203.17|VEZT|pc|chr12:95242163:95242314:+	0	+
#Deleted in new
chr12	95243940	95244009	ENSG00000028203.17|VEZT|pc|chr12:95243940:95244009:+	0	+
#Deleted in new
chr12	95258244	95258282	ENSG00000028203.17|VEZT|pc|chr12:95258244:95258282:+	0	+
#Deleted in new
chr12	95258244	95258287	ENSG00000028203.17|VEZT|pc|chr12:95258244:95258287:+	0	+
#Deleted in new
chr12	95263745	95263797	ENSG00000028203.17|VEZT|pc|chr12:95263745:95263797:+	0	+
#Deleted in new
chr12	95293683	95294184	ENSG00000028203.17|VEZT|pc|chr12:95293683:95294184:+	0	+
#Deleted in new
chr12	95387889	95388238	ENSG00000258313.1|AC084879.2|lncRNA|chr12:95387889:95388238:-	0	-
#Deleted in new
chr12	95388538	95388558	ENSG00000258313.1|AC084879.2|lncRNA|chr12:95388538:95388558:-	0	-
#Deleted in new
chr12	95482126	95482210	ENSG00000111142.13|METAP2|pc|chr12:95482126:95482210:+	0	+
#Partially deleted in new
chr12	95483214	95483494	ENSG00000111142.13|METAP2|pc|chr12:95483214:95483494:+	0	+
#Deleted in new
chr12	95484793	95484873	ENSG00000111142.13|METAP2|pc|chr12:95484793:95484873:+	0	+
#Deleted in new
chr1	29553	30039	ENSG00000243485.5|MIR1302-2HG|lncRNA|chr1:29553:30039:+	0	+
#Deleted in new
chr12	95535372	95535426	ENSG00000136014.11|USP44|pc|chr12:95535372:95535426:-	0	-
#Deleted in new
chr12	9567489	9567567	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9567489:9567567:+	0	+
#Deleted in new
chr12	9567489	9569202	ENSG00000214776.11|AC092821.1|pc|chr12:9567489:9569202:+	0	+
#Deleted in new
chr12	9569057	9569202	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9569057:9569202:+	0	+
#Deleted in new
chr12	95795344	95795657	ENSG00000258343.1|AC090001.1|lncRNA|chr12:95795344:95795657:-	0	-
#Deleted in new
chr12	95833016	95833084	ENSG00000258343.1|AC090001.1|lncRNA|chr12:95833016:95833084:-	0	-
#Deleted in new
chr12	9584105	9584164	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9584105:9584164:+	0	+
#Deleted in new
chr12	9587815	9587878	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9587815:9587878:+	0	+
#Deleted in new
chr12	95889058	95889181	ENSG00000139343.10|SNRPF|pc|chr12:95889058:95889181:+	0	+
#Deleted in new
chr12	95903404	95903828	ENSG00000139343.10|SNRPF|pc|chr12:95903404:95903828:+	0	+
#Deleted in new
chr12	95919438	95919623	ENSG00000165972.12|CCDC38|pc|chr12:95919438:95919623:-	0	-
#Deleted in new
chr12	95919438	95919657	ENSG00000165972.12|CCDC38|pc|chr12:95919438:95919657:-	0	-
#Deleted in new
chr12	95919553	95919623	ENSG00000165972.12|CCDC38|pc|chr12:95919553:95919623:-	0	-
#Deleted in new
chr12	95933184	95935527	ENSG00000165972.12|CCDC38|pc|chr12:95933184:95935527:-	0	-
#Deleted in new
chr12	95947055	95947437	ENSG00000139344.7|AMDHD1|pc|chr12:95947055:95947437:+	0	+
#Deleted in new
chr12	9594813	9594875	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9594813:9594875:+	0	+
#Partially deleted in new
chr12	96009960	96010070	ENSG00000257878.1|AC007298.2|lncRNA|chr12:96009960:96010070:+	0	+
#Deleted in new
chr12	96011017	96011489	ENSG00000257878.1|AC007298.2|lncRNA|chr12:96011017:96011489:+	0	+
#Deleted in new
chr12	96011294	96011865	ENSG00000111144.9|LTA4H|pc|chr12:96011294:96011865:-	0	-
#Deleted in new
chr12	96011752	96011865	ENSG00000111144.9|LTA4H|pc|chr12:96011752:96011865:-	0	-
#Deleted in new
chr12	96025322	96025404	ENSG00000257715.1|AC007298.1|lncRNA|chr12:96025322:96025404:+	0	+
#Deleted in new
chr12	96043288	96043477	ENSG00000111144.9|LTA4H|pc|chr12:96043288:96043477:-	0	-
#Deleted in new
chr12	96043288	96043520	ENSG00000111144.9|LTA4H|pc|chr12:96043288:96043520:-	0	-
#Deleted in new
chr12	96171826	96172126	ENSG00000283422.1|LINC02452|lncRNA|chr12:96171826:96172126:-	0	-
#Deleted in new
chr12	9617243	9617351	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9617243:9617351:+	0	+
#Deleted in new
chr12	9617283	9617351	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9617283:9617351:+	0	+
#Deleted in new
chr12	96213750	96213868	ENSG00000111145.7|ELK3|pc|chr12:96213750:96213868:+	0	+
#Deleted in new
chr12	96222796	96222892	ENSG00000258177.1|AC008149.1|lncRNA|chr12:96222796:96222892:-	0	-
#Deleted in new
chr12	9622318	9622436	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9622318:9622436:+	0	+
#Deleted in new
chr12	96284407	96284453	ENSG00000059758.7|CDK17|pc|chr12:96284407:96284453:-	0	-
#Deleted in new
chr1	2963263	2963415	ENSG00000284745.1|AL589702.1|lncRNA|chr1:2963263:2963415:-	0	-
#Deleted in new
chr12	9633418	9633521	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9633418:9633521:+	0	+
#Deleted in new
chr12	9633424	9633529	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9633424:9633529:+	0	+
#Deleted in new
chr12	9633424	9633828	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9633424:9633828:+	0	+
#Deleted in new
chr12	9634526	9634696	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9634526:9634696:+	0	+
#Deleted in new
chr12	9634591	9634696	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9634591:9634696:+	0	+
#Partially deleted in new
chr12	96422325	96422391	ENSG00000258272.1|AC007513.1|lncRNA|chr12:96422325:96422391:-	0	-
#Deleted in new
chr12	96429380	96429467	ENSG00000258272.1|AC007513.1|lncRNA|chr12:96429380:96429467:-	0	-
#Deleted in new
chr12	9647013	9647376	ENSG00000256442.1|AC010186.1|lncRNA|chr12:9647013:9647376:-	0	-
#Deleted in new
chr12	9647840	9648009	ENSG00000256442.1|AC010186.1|lncRNA|chr12:9647840:9648009:-	0	-
#Partially deleted in new
chr12	96483449	96483636	ENSG00000258272.1|AC007513.1|lncRNA|chr12:96483449:96483636:-	0	-
#Deleted in new
chr12	96485403	96485442	ENSG00000258272.1|AC007513.1|lncRNA|chr12:96485403:96485442:-	0	-
#Deleted in new
chr12	96540136	96540245	ENSG00000188596.10|CFAP54|pc|chr12:96540136:96540245:+	0	+
#Partially deleted in new
chr12	9656920	9657441	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9656920:9657441:+	0	+
#Partially deleted in new
chr12	9656920	9658392	ENSG00000284634.1|AC092821.3|lncRNA|chr12:9656920:9658392:+	0	+
#Deleted in new
chr12	9658566	9658629	ENSG00000257027.1|AC010186.3|lncRNA|chr12:9658566:9658629:+	0	+
#Deleted in new
chr12	9659640	9662085	ENSG00000257027.1|AC010186.3|lncRNA|chr12:9659640:9662085:+	0	+
#Partially deleted in new
chr12	96645157	96647127	ENSG00000188596.10|CFAP54|pc|chr12:96645157:96647127:+	0	+
#Deleted in new
chr12	9664968	9665112	ENSG00000069493.14|CLEC2D|pc|chr12:9664968:9665112:+	0	+
#Deleted in new
chr12	9668636	9668795	ENSG00000069493.14|CLEC2D|pc|chr12:9668636:9668795:+	0	+
#Deleted in new
chr12	9669712	9669795	ENSG00000069493.14|CLEC2D|pc|chr12:9669712:9669795:+	0	+
#Deleted in new
chr12	9669716	9669795	ENSG00000069493.14|CLEC2D|pc|chr12:9669716:9669795:+	0	+
#Deleted in new
chr12	9669727	9669795	ENSG00000069493.14|CLEC2D|pc|chr12:9669727:9669795:+	0	+
#Deleted in new
chr12	9669734	9669795	ENSG00000069493.14|CLEC2D|pc|chr12:9669734:9669795:+	0	+
#Deleted in new
chr12	9669752	9669795	ENSG00000069493.14|CLEC2D|pc|chr12:9669752:9669795:+	0	+
#Deleted in new
chr12	9674007	9674210	ENSG00000069493.14|CLEC2D|pc|chr12:9674007:9674210:+	0	+
#Deleted in new
chr12	9680189	9680251	ENSG00000069493.14|CLEC2D|pc|chr12:9680189:9680251:+	0	+
#Deleted in new
chr12	9680922	9681033	ENSG00000069493.14|CLEC2D|pc|chr12:9680922:9681033:+	0	+
#Deleted in new
chr12	9680922	9681050	ENSG00000069493.14|CLEC2D|pc|chr12:9680922:9681050:+	0	+
#Deleted in new
chr12	9680924	9681033	ENSG00000069493.14|CLEC2D|pc|chr12:9680924:9681033:+	0	+
#Deleted in new
chr12	9680939	9681033	ENSG00000069493.14|CLEC2D|pc|chr12:9680939:9681033:+	0	+
#Deleted in new
chr12	96907603	96907624	ENSG00000139350.11|NEDD1|pc|chr12:96907603:96907624:+	0	+
#Deleted in new
chr12	96924832	96924895	ENSG00000139350.11|NEDD1|pc|chr12:96924832:96924895:+	0	+
#Deleted in new
chr12	96924832	96924942	ENSG00000139350.11|NEDD1|pc|chr12:96924832:96924942:+	0	+
#Deleted in new
chr12	9693033	9693115	ENSG00000069493.14|CLEC2D|pc|chr12:9693033:9693115:+	0	+
#Partially deleted in new
chr12	9693033	9693336	ENSG00000069493.14|CLEC2D|pc|chr12:9693033:9693336:+	0	+
#Deleted in new
chr12	9693824	9693948	ENSG00000069493.14|CLEC2D|pc|chr12:9693824:9693948:+	0	+
#Partially deleted in new
chr12	9694759	9695106	ENSG00000069493.14|CLEC2D|pc|chr12:9694759:9695106:+	0	+
#Partially deleted in new
chr12	9694759	9695129	ENSG00000069493.14|CLEC2D|pc|chr12:9694759:9695129:+	0	+
#Partially deleted in new
chr12	9694759	9695138	ENSG00000069493.14|CLEC2D|pc|chr12:9694759:9695138:+	0	+
#Split in new
chr12	9694759	9699555	ENSG00000069493.14|CLEC2D|pc|chr12:9694759:9699555:+	0	+
#Deleted in new
chr12	97033333	97033423	ENSG00000257470.1|AC013417.1|lncRNA|chr12:97033333:97033423:+	0	+
#Deleted in new
chr12	9708871	9709350	ENSG00000256582.1|LINC02390|lncRNA|chr12:9708871:9709350:+	0	+
#Deleted in new
chr12	9715859	9716776	ENSG00000184293.7|CLECL1|pc|chr12:9715859:9716776:-	0	-
#Deleted in new
chr12	9716560	9716776	ENSG00000184293.7|CLECL1|pc|chr12:9716560:9716776:-	0	-
#Deleted in new
chr12	9718640	9718774	ENSG00000184293.7|CLECL1|pc|chr12:9718640:9718774:-	0	-
#Deleted in new
chr12	9718684	9718774	ENSG00000184293.7|CLECL1|pc|chr12:9718684:9718774:-	0	-
#Deleted in new
chr12	9722494	9722813	ENSG00000184293.7|CLECL1|pc|chr12:9722494:9722813:-	0	-
#Deleted in new
chr12	9722643	9722661	ENSG00000184293.7|CLECL1|pc|chr12:9722643:9722661:-	0	-
#Deleted in new
chr12	9722643	9722813	ENSG00000184293.7|CLECL1|pc|chr12:9722643:9722813:-	0	-
#Deleted in new
chr12	9732948	9733119	ENSG00000184293.7|CLECL1|pc|chr12:9732948:9733119:-	0	-
#Deleted in new
chr12	9732948	9733299	ENSG00000184293.7|CLECL1|pc|chr12:9732948:9733299:-	0	-
#Deleted in new
chr12	974132	977106	ENSG00000250132.6|AC004803.1|lncRNA|chr12:974132:977106:-	0	-
#Deleted in new
chr12	97430883	97430972	ENSG00000255794.7|RMST|lncRNA|chr12:97430883:97430972:+	0	+
#Deleted in new
chr1	29760122	29760392	ENSG00000284676.1|AL645944.2|lncRNA|chr1:29760122:29760392:+	0	+
#Deleted in new
chr12	976803	977067	ENSG00000250132.6|AC004803.1|lncRNA|chr12:976803:977067:-	0	-
#Deleted in new
chr12	976978	977106	ENSG00000250132.6|AC004803.1|lncRNA|chr12:976978:977106:-	0	-
#Deleted in new
chr1	29776805	29776929	ENSG00000284676.1|AL645944.2|lncRNA|chr1:29776805:29776929:+	0	+
#Deleted in new
chr1	29784005	29784297	ENSG00000284676.1|AL645944.2|lncRNA|chr1:29784005:29784297:+	0	+
#Deleted in new
chr12	98114951	98115043	ENSG00000258312.1|AC016152.1|lncRNA|chr12:98114951:98115043:-	0	-
#Deleted in new
chr12	9827480	9827629	ENSG00000150045.11|KLRF1|pc|chr12:9827480:9827629:+	0	+
#Deleted in new
chr12	9827520	9827629	ENSG00000150045.11|KLRF1|pc|chr12:9827520:9827629:+	0	+
#Deleted in new
chr12	98292409	98292445	ENSG00000258312.1|AC016152.1|lncRNA|chr12:98292409:98292445:-	0	-
#Deleted in new
chr12	9832315	9832414	ENSG00000150045.11|KLRF1|pc|chr12:9832315:9832414:+	0	+
#Deleted in new
chr12	9833302	9833452	ENSG00000150045.11|KLRF1|pc|chr12:9833302:9833452:+	0	+
#Deleted in new
chr12	9841811	9841951	ENSG00000150045.11|KLRF1|pc|chr12:9841811:9841951:+	0	+
#Deleted in new
chr12	9841813	9841951	ENSG00000150045.11|KLRF1|pc|chr12:9841813:9841951:+	0	+
#Deleted in new
chr12	9842301	9842433	ENSG00000150045.11|KLRF1|pc|chr12:9842301:9842433:+	0	+
#Deleted in new
chr12	9842320	9842433	ENSG00000150045.11|KLRF1|pc|chr12:9842320:9842433:+	0	+
#Deleted in new
chr12	9844417	9844657	ENSG00000150045.11|KLRF1|pc|chr12:9844417:9844657:+	0	+
#Deleted in new
chr12	9844417	9844992	ENSG00000150045.11|KLRF1|pc|chr12:9844417:9844992:+	0	+
#Deleted in new
chr12	9844417	9845002	ENSG00000150045.11|KLRF1|pc|chr12:9844417:9845002:+	0	+
#Deleted in new
chr12	9844417	9845007	ENSG00000150045.11|KLRF1|pc|chr12:9844417:9845007:+	0	+
#Deleted in new
chr12	98486972	98487188	ENSG00000245017.2|LINC02453|lncRNA|chr12:98486972:98487188:-	0	-
#Deleted in new
chr12	98493430	98493484	ENSG00000245017.2|LINC02453|lncRNA|chr12:98493430:98493484:-	0	-
#Deleted in new
chr12	98502582	98502612	ENSG00000245017.2|LINC02453|lncRNA|chr12:98502582:98502612:-	0	-
#Partially deleted in new
chr12	9852983	9853408	ENSG00000110852.4|CLEC2B|pc|chr12:9852983:9853408:-	0	-
#Partially deleted in new
chr12	9854380	9854849	ENSG00000110852.4|CLEC2B|pc|chr12:9854380:9854849:-	0	-
#Partially deleted in new
chr12	9856900	9857637	ENSG00000110852.4|CLEC2B|pc|chr12:9856900:9857637:-	0	-
#Partially deleted in new
chr12	9856927	9857637	ENSG00000110852.4|CLEC2B|pc|chr12:9856927:9857637:-	0	-
#Partially deleted in new
chr12	98601367	98606379	ENSG00000075415.12|SLC25A3|pc|chr12:98601367:98606379:+	0	+
#Deleted in new
chr12	9862498	9862573	ENSG00000110852.4|CLEC2B|pc|chr12:9862498:9862573:-	0	-
#Deleted in new
chr12	9867026	9867266	ENSG00000255882.1|AC091814.1|lncRNA|chr12:9867026:9867266:+	0	+
#Deleted in new
chr12	9869204	9869354	ENSG00000110852.4|CLEC2B|pc|chr12:9869204:9869354:-	0	-
#Deleted in new
chr12	9869204	9869386	ENSG00000110852.4|CLEC2B|pc|chr12:9869204:9869386:-	0	-
#Deleted in new
chr12	9869204	9870136	ENSG00000110852.4|CLEC2B|pc|chr12:9869204:9870136:-	0	-
#Deleted in new
chr12	9869329	9869808	ENSG00000255882.1|AC091814.1|lncRNA|chr12:9869329:9869808:+	0	+
#Partially deleted in new
chr12	98712318	98712761	ENSG00000120868.13|APAF1|pc|chr12:98712318:98712761:+	0	+
#Deleted in new
chr12	98726456	98726709	ENSG00000185046.18|ANKS1B|pc|chr12:98726456:98726709:-	0	-
#Deleted in new
chr12	98735517	98735634	ENSG00000185046.18|ANKS1B|pc|chr12:98735517:98735634:-	0	-
#Deleted in new
chr12	98735559	98735634	ENSG00000185046.18|ANKS1B|pc|chr12:98735559:98735634:-	0	-
#Deleted in new
chr12	9881488	9881665	ENSG00000256797.1|KLRF2|pc|chr12:9881488:9881665:+	0	+
#Deleted in new
chr12	9884933	9885032	ENSG00000256797.1|KLRF2|pc|chr12:9884933:9885032:+	0	+
#Deleted in new
chr12	9888732	9888780	ENSG00000256797.1|KLRF2|pc|chr12:9888732:9888780:+	0	+
#Deleted in new
chr12	9893019	9893168	ENSG00000256797.1|KLRF2|pc|chr12:9893019:9893168:+	0	+
#Deleted in new
chr12	9893428	9893541	ENSG00000256797.1|KLRF2|pc|chr12:9893428:9893541:+	0	+
#Deleted in new
chr12	9895688	9895833	ENSG00000256797.1|KLRF2|pc|chr12:9895688:9895833:+	0	+
#Deleted in new
chr12	9898672	9898976	ENSG00000188393.8|CLEC2A|pc|chr12:9898672:9898976:-	0	-
#Deleted in new
chr12	99048713	99049107	ENSG00000185046.18|ANKS1B|pc|chr12:99048713:99049107:-	0	-
#Deleted in new
chr12	99079744	99079964	ENSG00000185046.18|ANKS1B|pc|chr12:99079744:99079964:-	0	-
#Partially deleted in new
chr12	9913226	9913680	ENSG00000188393.8|CLEC2A|pc|chr12:9913226:9913680:-	0	-
#Deleted in new
chr12	9926259	9926343	ENSG00000188393.8|CLEC2A|pc|chr12:9926259:9926343:-	0	-
#Deleted in new
chr12	9932274	9932347	ENSG00000188393.8|CLEC2A|pc|chr12:9932274:9932347:-	0	-
#Deleted in new
chr12	9932274	9932381	ENSG00000188393.8|CLEC2A|pc|chr12:9932274:9932381:-	0	-
#Deleted in new
chr12	99341119	99341248	ENSG00000185046.18|ANKS1B|pc|chr12:99341119:99341248:-	0	-
#Deleted in new
chr12	99351975	99352129	ENSG00000185046.18|ANKS1B|pc|chr12:99351975:99352129:-	0	-
#Partially deleted in new
chr12	9948136	9950127	ENSG00000231560.1|CLEC12A-AS1|lncRNA|chr12:9948136:9950127:-	0	-
#Deleted in new
chr12	9950901	9952079	ENSG00000231560.1|CLEC12A-AS1|lncRNA|chr12:9950901:9952079:-	0	-
#Deleted in new
chr12	9951315	9951356	ENSG00000172322.13|CLEC12A|pc|chr12:9951315:9951356:+	0	+
#Deleted in new
chr12	9952549	9953336	ENSG00000231560.1|CLEC12A-AS1|lncRNA|chr12:9952549:9953336:-	0	-
#Partially deleted in new
chr12	9984869	9985595	ENSG00000172322.13|CLEC12A|pc|chr12:9984869:9985595:+	0	+
#Deleted in new
chr12	9985641	9986158	ENSG00000165682.14|CLEC1B|pc|chr12:9985641:9986158:-	0	-
#Deleted in new
chr1	30013951	30014509	ENSG00000233399.2|LINC01648|lncRNA|chr1:30013951:30014509:-	0	-
#Deleted in new
chr1	30015243	30015295	ENSG00000233399.2|LINC01648|lncRNA|chr1:30015243:30015295:-	0	-
#Deleted in new
chr1	30016719	30016921	ENSG00000233399.2|LINC01648|lncRNA|chr1:30016719:30016921:-	0	-
#Deleted in new
chr1	30025024	30025183	ENSG00000233399.2|LINC01648|lncRNA|chr1:30025024:30025183:-	0	-
#Deleted in new
chr1	30029289	30029490	ENSG00000233399.2|LINC01648|lncRNA|chr1:30029289:30029490:-	0	-
#Deleted in new
chr1	30036771	30037003	ENSG00000233399.2|LINC01648|lncRNA|chr1:30036771:30037003:-	0	-
#Deleted in new
chr1	30141134	30141607	ENSG00000233372.1|AL137076.1|lncRNA|chr1:30141134:30141607:+	0	+
#Deleted in new
chr1	30266	30667	ENSG00000243485.5|MIR1302-2HG|lncRNA|chr1:30266:30667:+	0	+
#Deleted in new
chr1	30410923	30411079	ENSG00000236335.1|AL161638.2|lncRNA|chr1:30410923:30411079:-	0	-
#Deleted in new
chr1	30415824	30415873	ENSG00000231949.1|AL161638.1|lncRNA|chr1:30415824:30415873:+	0	+
#Deleted in new
chr1	30416846	30416953	ENSG00000231949.1|AL161638.1|lncRNA|chr1:30416846:30416953:+	0	+
#Deleted in new
chr1	30420783	30421108	ENSG00000231949.1|AL161638.1|lncRNA|chr1:30420783:30421108:+	0	+
#Deleted in new
chr1	30563	30667	ENSG00000243485.5|MIR1302-2HG|lncRNA|chr1:30563:30667:+	0	+
#Deleted in new
chr1	3060500	3060604	ENSG00000177133.10|LINC00982|lncRNA|chr1:3060500:3060604:-	0	-
#Deleted in new
chr1	3061106	3061331	ENSG00000177133.10|LINC00982|lncRNA|chr1:3061106:3061331:-	0	-
#Deleted in new
chr1	3061288	3061331	ENSG00000177133.10|LINC00982|lncRNA|chr1:3061288:3061331:-	0	-
#Deleted in new
chr1	3061958	3062192	ENSG00000177133.10|LINC00982|lncRNA|chr1:3061958:3062192:-	0	-
#Partially deleted in new
chr1	3062194	3062395	ENSG00000177133.10|LINC00982|lncRNA|chr1:3062194:3062395:-	0	-
#Partially deleted in new
chr1	30726242	30726364	ENSG00000186056.9|MATN1-AS1|lncRNA|chr1:30726242:30726364:+	0	+
#Partially deleted in new
chr1	30726242	30726744	ENSG00000186056.9|MATN1-AS1|lncRNA|chr1:30726242:30726744:+	0	+
#Partially deleted in new
chr1	30726242	30726827	ENSG00000186056.9|MATN1-AS1|lncRNA|chr1:30726242:30726827:+	0	+
#Deleted in new
chr1	30745917	30746229	ENSG00000162511.7|LAPTM5|pc|chr1:30745917:30746229:-	0	-
#Partially deleted in new
chr1	30815446	30815553	ENSG00000229607.1|AL137027.1|lncRNA|chr1:30815446:30815553:-	0	-
#Deleted in new
chr1	30826130	30826194	ENSG00000223382.4|LINC01778|lncRNA|chr1:30826130:30826194:+	0	+
#Deleted in new
chr1	30826133	30826194	ENSG00000223382.4|LINC01778|lncRNA|chr1:30826133:30826194:+	0	+
#Deleted in new
chr1	30826554	30826652	ENSG00000223382.4|LINC01778|lncRNA|chr1:30826554:30826652:+	0	+
#Deleted in new
chr1	30826604	30826652	ENSG00000223382.4|LINC01778|lncRNA|chr1:30826604:30826652:+	0	+
#Deleted in new
chr1	30829747	30829882	ENSG00000223382.4|LINC01778|lncRNA|chr1:30829747:30829882:+	0	+
#Deleted in new
chr1	30833505	30833733	ENSG00000223382.4|LINC01778|lncRNA|chr1:30833505:30833733:+	0	+
#Deleted in new
chr1	30878928	30879012	ENSG00000162512.15|SDC3|pc|chr1:30878928:30879012:-	0	-
#Deleted in new
chr1	30975	31097	ENSG00000243485.5|MIR1302-2HG|lncRNA|chr1:30975:31097:+	0	+
#Deleted in new
chr1	30975	31109	ENSG00000243485.5|MIR1302-2HG|lncRNA|chr1:30975:31109:+	0	+
#Deleted in new
chr13	100086030	100086727	ENSG00000274605.1|AL355338.1|lncRNA|chr13:100086030:100086727:-	0	-
#Deleted in new
chr13	100088632	100088848	ENSG00000274605.1|AL355338.1|lncRNA|chr13:100088632:100088848:-	0	-
#Deleted in new
chr13	100160672	100161625	ENSG00000175198.15|PCCA|pc|chr13:100160672:100161625:+	0	+
#Deleted in new
chr13	100293223	100293254	ENSG00000175198.15|PCCA|pc|chr13:100293223:100293254:+	0	+
#Deleted in new
chr13	100464439	100464570	ENSG00000234650.5|PCCA-AS1|lncRNA|chr13:100464439:100464570:-	0	-
#Deleted in new
chr13	100479546	100479763	ENSG00000234650.5|PCCA-AS1|lncRNA|chr13:100479546:100479763:-	0	-
#Deleted in new
chr13	100479558	100479763	ENSG00000234650.5|PCCA-AS1|lncRNA|chr13:100479558:100479763:-	0	-
#Deleted in new
chr13	100480260	100480285	ENSG00000234650.5|PCCA-AS1|lncRNA|chr13:100480260:100480285:-	0	-
#Deleted in new
chr13	100480260	100480363	ENSG00000234650.5|PCCA-AS1|lncRNA|chr13:100480260:100480363:-	0	-
#Deleted in new
chr13	100480979	100481015	ENSG00000234650.5|PCCA-AS1|lncRNA|chr13:100480979:100481015:-	0	-
#Deleted in new
chr13	100481119	100481157	ENSG00000234650.5|PCCA-AS1|lncRNA|chr13:100481119:100481157:-	0	-
#Partially deleted in new
chr13	100491649	100491817	ENSG00000175198.15|PCCA|pc|chr13:100491649:100491817:+	0	+
#Deleted in new
chr13	100533286	100533368	ENSG00000134864.10|GGACT|pc|chr13:100533286:100533368:-	0	-
#Deleted in new
chr13	100533286	100533653	ENSG00000134864.10|GGACT|pc|chr13:100533286:100533653:-	0	-
#Deleted in new
chr13	100533562	100533669	ENSG00000134864.10|GGACT|pc|chr13:100533562:100533669:-	0	-
#Deleted in new
chr13	100533562	100533774	ENSG00000134864.10|GGACT|pc|chr13:100533562:100533774:-	0	-
#Deleted in new
chr13	100533562	100533802	ENSG00000134864.10|GGACT|pc|chr13:100533562:100533802:-	0	-
#Deleted in new
chr13	100535740	100537886	ENSG00000224356.5|AL356966.1|lncRNA|chr13:100535740:100537886:-	0	-
#Deleted in new
chr13	100537364	100539567	ENSG00000280169.1|AL136526.1|lncRNA|chr13:100537364:100539567:+	0	+
#Deleted in new
chr13	100537609	100537886	ENSG00000224356.5|AL356966.1|lncRNA|chr13:100537609:100537886:-	0	-
#Partially deleted in new
chr13	100539173	100539806	ENSG00000224356.5|AL356966.1|lncRNA|chr13:100539173:100539806:-	0	-
#Deleted in new
chr13	100578883	100578943	ENSG00000224356.5|AL356966.1|lncRNA|chr13:100578883:100578943:-	0	-
#Deleted in new
chr13	100580044	100580112	ENSG00000224356.5|AL356966.1|lncRNA|chr13:100580044:100580112:-	0	-
#Deleted in new
chr13	100583824	100583997	ENSG00000134864.10|GGACT|pc|chr13:100583824:100583997:-	0	-
#Deleted in new
chr13	100583824	100583997	ENSG00000224356.5|AL356966.1|lncRNA|chr13:100583824:100583997:-	0	-
#Deleted in new
chr13	100708324	100708393	ENSG00000233009.1|NALCN-AS1|lncRNA|chr13:100708324:100708393:+	0	+
#Deleted in new
chr13	100740556	100740628	ENSG00000233009.1|NALCN-AS1|lncRNA|chr13:100740556:100740628:+	0	+
#Deleted in new
chr13	101049279	101049365	ENSG00000233009.1|NALCN-AS1|lncRNA|chr13:101049279:101049365:+	0	+
#Deleted in new
chr13	101368544	101368998	ENSG00000102452.15|NALCN|pc|chr13:101368544:101368998:-	0	-
#Partially deleted in new
chr13	102292326	102294040	ENSG00000243319.7|FGF14-IT1|lncRNA|chr13:102292326:102294040:-	0	-
#Partially deleted in new
chr13	102292686	102294040	ENSG00000243319.7|FGF14-IT1|lncRNA|chr13:102292686:102294040:-	0	-
#Deleted in new
chr13	102354109	102354222	ENSG00000243319.7|FGF14-IT1|lncRNA|chr13:102354109:102354222:-	0	-
#Deleted in new
chr13	102373423	102373666	ENSG00000234445.1|FGF14-AS1|lncRNA|chr13:102373423:102373666:+	0	+
#Deleted in new
chr13	102393757	102393831	ENSG00000243319.7|FGF14-IT1|lncRNA|chr13:102393757:102393831:-	0	-
#Partially deleted in new
chr13	102589371	102589813	ENSG00000261057.1|LINC00555|lncRNA|chr13:102589371:102589813:-	0	-
#Partially deleted in new
chr13	102593337	102593873	ENSG00000276957.1|AL158063.1|lncRNA|chr13:102593337:102593873:-	0	-
#Deleted in new
chr13	102607631	102608022	ENSG00000134900.11|TPP2|pc|chr13:102607631:102608022:+	0	+
#Deleted in new
chr13	102667757	102667883	ENSG00000134900.11|TPP2|pc|chr13:102667757:102667883:+	0	+
#Deleted in new
chr13	102805306	102805390	ENSG00000134897.13|BIVM|pc|chr13:102805306:102805390:+	0	+
#Deleted in new
chr13	102805306	102805390	ENSG00000270181.2|BIVM-ERCC5|pc|chr13:102805306:102805390:+	0	+
#Partially deleted in new
chr13	102858910	102858937	ENSG00000134899.18|ERCC5|pc|chr13:102858910:102858937:+	0	+
#Deleted in new
chr13	103427315	103427685	ENSG00000234551.1|LINC01309|lncRNA|chr13:103427315:103427685:+	0	+
#Deleted in new
chr13	105466014	105466332	ENSG00000182346.18|DAOA|pc|chr13:105466014:105466332:+	0	+
#Deleted in new
chr13	105466017	105466332	ENSG00000182346.18|DAOA|pc|chr13:105466017:105466332:+	0	+
#Deleted in new
chr13	105466044	105466060	ENSG00000182346.18|DAOA|pc|chr13:105466044:105466060:+	0	+
#Deleted in new
chr13	105466186	105466420	ENSG00000232307.1|DAOA-AS1|lncRNA|chr13:105466186:105466420:-	0	-
#Deleted in new
chr13	105466215	105466332	ENSG00000182346.18|DAOA|pc|chr13:105466215:105466332:+	0	+
#Deleted in new
chr13	105466242	105466332	ENSG00000182346.18|DAOA|pc|chr13:105466242:105466332:+	0	+
#Deleted in new
chr13	105466247	105466332	ENSG00000182346.18|DAOA|pc|chr13:105466247:105466332:+	0	+
#Deleted in new
chr13	105466269	105466332	ENSG00000182346.18|DAOA|pc|chr13:105466269:105466332:+	0	+
#Deleted in new
chr13	105466288	105466332	ENSG00000182346.18|DAOA|pc|chr13:105466288:105466332:+	0	+
#Partially deleted in new
chr13	105467006	105467141	ENSG00000182346.18|DAOA|pc|chr13:105467006:105467141:+	0	+
#Deleted in new
chr13	105467609	105467722	ENSG00000182346.18|DAOA|pc|chr13:105467609:105467722:+	0	+
#Deleted in new
chr13	105472537	105472685	ENSG00000182346.18|DAOA|pc|chr13:105472537:105472685:+	0	+
#Deleted in new
chr13	105472542	105472685	ENSG00000182346.18|DAOA|pc|chr13:105472542:105472685:+	0	+
#Deleted in new
chr13	105472597	105472685	ENSG00000182346.18|DAOA|pc|chr13:105472597:105472685:+	0	+
#Deleted in new
chr13	105489775	105490017	ENSG00000232307.1|DAOA-AS1|lncRNA|chr13:105489775:105490017:-	0	-
#Deleted in new
chr13	105489791	105490081	ENSG00000182346.18|DAOA|pc|chr13:105489791:105490081:+	0	+
#Deleted in new
chr13	105489791	105490192	ENSG00000182346.18|DAOA|pc|chr13:105489791:105490192:+	0	+
#Deleted in new
chr13	105489900	105490192	ENSG00000182346.18|DAOA|pc|chr13:105489900:105490192:+	0	+
#Deleted in new
chr13	105505581	105505681	ENSG00000232307.1|DAOA-AS1|lncRNA|chr13:105505581:105505681:-	0	-
#Deleted in new
chr1	31055312	31055380	ENSG00000134644.15|PUM1|pc|chr1:31055312:31055380:-	0	-
#Deleted in new
chr13	105690428	105690488	ENSG00000280455.1|AL359745.1|lncRNA|chr13:105690428:105690488:+	0	+
#Deleted in new
chr13	105695497	105695633	ENSG00000280455.1|AL359745.1|lncRNA|chr13:105695497:105695633:+	0	+
#Partially deleted in new
chr13	105697693	105697779	ENSG00000280455.1|AL359745.1|lncRNA|chr13:105697693:105697779:+	0	+
#Deleted in new
chr13	105761262	105761437	ENSG00000226620.7|LINC00343|lncRNA|chr13:105761262:105761437:+	0	+
#Deleted in new
chr13	105761262	105762100	ENSG00000226620.7|LINC00343|lncRNA|chr13:105761262:105762100:+	0	+
#Deleted in new
chr13	105761328	105761560	ENSG00000226620.7|LINC00343|lncRNA|chr13:105761328:105761560:+	0	+
#Deleted in new
chr1	31061666	31061916	ENSG00000134644.15|PUM1|pc|chr1:31061666:31061916:-	0	-
#Deleted in new
chr13	106376562	106376665	ENSG00000233532.5|LINC00460|lncRNA|chr13:106376562:106376665:+	0	+
#Deleted in new
chr13	106376791	106377084	ENSG00000233532.5|LINC00460|lncRNA|chr13:106376791:106377084:+	0	+
#Deleted in new
chr13	106376866	106377084	ENSG00000233532.5|LINC00460|lncRNA|chr13:106376866:106377084:+	0	+
#Deleted in new
chr13	106377199	106377375	ENSG00000233532.5|LINC00460|lncRNA|chr13:106377199:106377375:+	0	+
#Deleted in new
chr13	106377199	106377645	ENSG00000233532.5|LINC00460|lncRNA|chr13:106377199:106377645:+	0	+
#Deleted in new
chr13	106617809	106618033	ENSG00000272274.1|LINC00551|lncRNA|chr13:106617809:106618033:+	0	+
#Deleted in new
chr13	106628018	106628141	ENSG00000272274.1|LINC00551|lncRNA|chr13:106628018:106628141:+	0	+
#Deleted in new
chr13	106653915	106654154	ENSG00000230156.2|LINC00443|lncRNA|chr13:106653915:106654154:+	0	+
#Deleted in new
chr13	106773622	106774279	ENSG00000278698.1|AL162574.2|lncRNA|chr13:106773622:106774279:-	0	-
#Deleted in new
chr13	107465983	107466674	ENSG00000276740.1|AL445649.1|lncRNA|chr13:107465983:107466674:-	0	-
#Partially deleted in new
chr13	107835401	107835451	ENSG00000227248.1|FAM155A-IT1|lncRNA|chr13:107835401:107835451:-	0	-
#Deleted in new
chr13	108214537	108214610	ENSG00000174405.13|LIG4|pc|chr13:108214537:108214610:-	0	-
#Deleted in new
chr13	108214537	108214782	ENSG00000174405.13|LIG4|pc|chr13:108214537:108214782:-	0	-
#Deleted in new
chr13	108214537	108214807	ENSG00000174405.13|LIG4|pc|chr13:108214537:108214807:-	0	-
#Partially deleted in new
chr13	108218161	108218368	ENSG00000174405.13|LIG4|pc|chr13:108218161:108218368:-	0	-
#Deleted in new
chr13	108251239	108251316	ENSG00000102524.11|TNFSF13B|pc|chr13:108251239:108251316:+	0	+
#Deleted in new
chr13	108267319	108267734	ENSG00000277246.1|AL157762.1|lncRNA|chr13:108267319:108267734:+	0	+
#Deleted in new
chr13	108335353	108335572	ENSG00000283384.1|AL138694.1|pc|chr13:108335353:108335572:+	0	+
#Deleted in new
chr13	108335402	108335572	ENSG00000283384.1|AL138694.1|pc|chr13:108335402:108335572:+	0	+
#Deleted in new
chr13	108335447	108335572	ENSG00000283384.1|AL138694.1|pc|chr13:108335447:108335572:+	0	+
#Deleted in new
chr13	108336087	108336497	ENSG00000283384.1|AL138694.1|pc|chr13:108336087:108336497:+	0	+
#Deleted in new
chr13	108365218	108365283	ENSG00000283384.1|AL138694.1|pc|chr13:108365218:108365283:+	0	+
#Deleted in new
chr13	108365670	108365795	ENSG00000283384.1|AL138694.1|pc|chr13:108365670:108365795:+	0	+
#Deleted in new
chr13	108369247	108369313	ENSG00000283384.1|AL138694.1|pc|chr13:108369247:108369313:+	0	+
#Deleted in new
chr13	108374570	108374712	ENSG00000283384.1|AL138694.1|pc|chr13:108374570:108374712:+	0	+
#Deleted in new
chr13	108431470	108432684	ENSG00000283384.1|AL138694.1|pc|chr13:108431470:108432684:+	0	+
#Deleted in new
chr13	108447181	108448316	ENSG00000283384.1|AL138694.1|pc|chr13:108447181:108448316:+	0	+
#Deleted in new
chr13	108779541	108780052	ENSG00000041515.15|MYO16|pc|chr13:108779541:108780052:+	0	+
#Partially deleted in new
chr13	109048337	109048982	ENSG00000041515.15|MYO16|pc|chr13:109048337:109048982:+	0	+
#Deleted in new
chr13	109101260	109101357	ENSG00000229938.1|MYO16-AS2|lncRNA|chr13:109101260:109101357:-	0	-
#Deleted in new
chr13	109167018	109167304	ENSG00000236242.1|MYO16-AS1|lncRNA|chr13:109167018:109167304:-	0	-
#Partially deleted in new
chr13	109269633	109273838	ENSG00000275216.1|AL161431.1|lncRNA|chr13:109269633:109273838:+	0	+
#Deleted in new
chr13	109281972	109282277	ENSG00000223617.1|LINC00370|lncRNA|chr13:109281972:109282277:+	0	+
#Deleted in new
chr13	109311214	109311773	ENSG00000236053.1|LINC01067|lncRNA|chr13:109311214:109311773:+	0	+
#Partially deleted in new
chr13	109401340	109401641	ENSG00000229792.1|LINC00399|lncRNA|chr13:109401340:109401641:+	0	+
#Deleted in new
chr13	109728281	109728545	ENSG00000234854.1|LINC00676|lncRNA|chr13:109728281:109728545:+	0	+
#Deleted in new
chr13	109805316	109805868	ENSG00000275248.1|AL355810.1|lncRNA|chr13:109805316:109805868:+	0	+
#Partially deleted in new
chr13	109807056	109807195	ENSG00000275741.1|AL162497.1|lncRNA|chr13:109807056:109807195:+	0	+
#Deleted in new
chr13	109807988	109808252	ENSG00000275741.1|AL162497.1|lncRNA|chr13:109807988:109808252:+	0	+
#Partially deleted in new
chr13	109984857	109986565	ENSG00000274331.1|AL355974.1|lncRNA|chr13:109984857:109986565:-	0	-
#Deleted in new
chr13	109988096	109988244	ENSG00000275830.1|AL355974.2|lncRNA|chr13:109988096:109988244:-	0	-
#Deleted in new
chr13	110031100	110031567	ENSG00000276269.1|AL355974.3|lncRNA|chr13:110031100:110031567:-	0	-
#Deleted in new
chr13	110032607	110032809	ENSG00000275830.1|AL355974.2|lncRNA|chr13:110032607:110032809:-	0	-
#Deleted in new
chr13	110053284	110053311	ENSG00000231428.2|LINC00396|lncRNA|chr13:110053284:110053311:+	0	+
#Deleted in new
chr13	110053850	110053913	ENSG00000231428.2|LINC00396|lncRNA|chr13:110053850:110053913:+	0	+
#Deleted in new
chr13	110054013	110054182	ENSG00000231428.2|LINC00396|lncRNA|chr13:110054013:110054182:+	0	+
#Deleted in new
chr13	110057125	110057286	ENSG00000275830.1|AL355974.2|lncRNA|chr13:110057125:110057286:-	0	-
#Deleted in new
chr13	110057125	110057331	ENSG00000275830.1|AL355974.2|lncRNA|chr13:110057125:110057331:-	0	-
#Partially deleted in new
chr13	110123207	110125234	ENSG00000279965.1|AL390755.1|lncRNA|chr13:110123207:110125234:+	0	+
#Partially deleted in new
chr13	110457524	110457587	ENSG00000224821.5|COL4A2-AS2|lncRNA|chr13:110457524:110457587:-	0	-
#Deleted in new
chr13	110457682	110457719	ENSG00000224821.5|COL4A2-AS2|lncRNA|chr13:110457682:110457719:-	0	-
#Deleted in new
chr13	110458090	110458286	ENSG00000224821.5|COL4A2-AS2|lncRNA|chr13:110458090:110458286:-	0	-
#Partially deleted in new
chr13	110458887	110459755	ENSG00000134871.17|COL4A2|pc|chr13:110458887:110459755:+	0	+
#Deleted in new
chr13	110463022	110463287	ENSG00000224821.5|COL4A2-AS2|lncRNA|chr13:110463022:110463287:-	0	-
#Deleted in new
chr13	110473466	110473594	ENSG00000134871.17|COL4A2|pc|chr13:110473466:110473594:+	0	+
#Deleted in new
chr13	110502574	110502928	ENSG00000232814.2|COL4A2-AS1|lncRNA|chr13:110502574:110502928:-	0	-
#Partially deleted in new
chr13	110507443	110507635	ENSG00000134871.17|COL4A2|pc|chr13:110507443:110507635:+	0	+
#Deleted in new
chr13	110507646	110507751	ENSG00000232814.2|COL4A2-AS1|lncRNA|chr13:110507646:110507751:-	0	-
#Partially deleted in new
chr13	110613081	110616353	ENSG00000275880.1|AL139385.1|lncRNA|chr13:110613081:110616353:-	0	-
#Partially deleted in new
chr13	110642314	110644182	ENSG00000134905.16|CARS2|pc|chr13:110642314:110644182:-	0	-
#Partially deleted in new
chr13	110642314	110645633	ENSG00000134905.16|CARS2|pc|chr13:110642314:110645633:-	0	-
#Deleted in new
chr13	110643752	110644182	ENSG00000134905.16|CARS2|pc|chr13:110643752:110644182:-	0	-
#Deleted in new
chr13	110643955	110643980	ENSG00000134905.16|CARS2|pc|chr13:110643955:110643980:-	0	-
#Deleted in new
chr13	110644064	110644182	ENSG00000134905.16|CARS2|pc|chr13:110644064:110644182:-	0	-
#Partially deleted in new
chr13	110645966	110647239	ENSG00000134905.16|CARS2|pc|chr13:110645966:110647239:-	0	-
#Partially deleted in new
chr13	110646466	110647239	ENSG00000134905.16|CARS2|pc|chr13:110646466:110647239:-	0	-
#Deleted in new
chr13	110646504	110646631	ENSG00000134905.16|CARS2|pc|chr13:110646504:110646631:-	0	-
#Partially deleted in new
chr13	110646678	110647239	ENSG00000134905.16|CARS2|pc|chr13:110646678:110647239:-	0	-
#Deleted in new
chr13	110648317	110649297	ENSG00000134905.16|CARS2|pc|chr13:110648317:110649297:-	0	-
#Partially deleted in new
chr13	110650246	110651100	ENSG00000134905.16|CARS2|pc|chr13:110650246:110651100:-	0	-
#Partially deleted in new
chr13	110650636	110651100	ENSG00000134905.16|CARS2|pc|chr13:110650636:110651100:-	0	-
#Deleted in new
chr13	110662837	110663050	ENSG00000134905.16|CARS2|pc|chr13:110662837:110663050:-	0	-
#Partially deleted in new
chr13	110663450	110663861	ENSG00000134905.16|CARS2|pc|chr13:110663450:110663861:-	0	-
#Deleted in new
chr13	110665527	110665730	ENSG00000134905.16|CARS2|pc|chr13:110665527:110665730:-	0	-
#Deleted in new
chr13	110665527	110665737	ENSG00000134905.16|CARS2|pc|chr13:110665527:110665737:-	0	-
#Deleted in new
chr13	110665527	110665750	ENSG00000134905.16|CARS2|pc|chr13:110665527:110665750:-	0	-
#Deleted in new
chr13	110665527	110665791	ENSG00000134905.16|CARS2|pc|chr13:110665527:110665791:-	0	-
#Deleted in new
chr13	110677922	110678093	ENSG00000134905.16|CARS2|pc|chr13:110677922:110678093:-	0	-
#Deleted in new
chr13	110688784	110688904	ENSG00000134905.16|CARS2|pc|chr13:110688784:110688904:-	0	-
#Deleted in new
chr13	110697917	110697967	ENSG00000134905.16|CARS2|pc|chr13:110697917:110697967:-	0	-
#Deleted in new
chr13	110706370	110706469	ENSG00000134905.16|CARS2|pc|chr13:110706370:110706469:-	0	-
#Deleted in new
chr13	110706370	110706505	ENSG00000134905.16|CARS2|pc|chr13:110706370:110706505:-	0	-
#Deleted in new
chr13	110707337	110707643	ENSG00000134905.16|CARS2|pc|chr13:110707337:110707643:-	0	-
#Partially deleted in new
chr13	110712231	110712486	ENSG00000134905.16|CARS2|pc|chr13:110712231:110712486:-	0	-
#Deleted in new
chr13	110809675	110813084	ENSG00000259831.1|LINC00567|lncRNA|chr13:110809675:110813084:-	0	-
#Deleted in new
chr13	110863986	110870251	ENSG00000255874.2|LINC00346|lncRNA|chr13:110863986:110870251:-	0	-
#Partially deleted in new
chr13	110894638	110895321	ENSG00000229152.2|ANKRD10-IT1|lncRNA|chr13:110894638:110895321:-	0	-
#Deleted in new
chr13	110899055	110899172	ENSG00000229152.2|ANKRD10-IT1|lncRNA|chr13:110899055:110899172:-	0	-
#Deleted in new
chr13	110911653	110911771	ENSG00000088448.14|ANKRD10|pc|chr13:110911653:110911771:-	0	-
#Deleted in new
chr13	111095837	111095894	ENSG00000225870.1|LINC00368|lncRNA|chr13:111095837:111095894:+	0	+
#Deleted in new
chr13	111096669	111096862	ENSG00000225870.1|LINC00368|lncRNA|chr13:111096669:111096862:+	0	+
#Deleted in new
chr13	111102697	111103097	ENSG00000225870.1|LINC00368|lncRNA|chr13:111102697:111103097:+	0	+
#Deleted in new
chr13	111122651	111122736	ENSG00000233644.1|ARHGEF7-IT1|lncRNA|chr13:111122651:111122736:+	0	+
#Deleted in new
chr13	111184937	111185225	ENSG00000102606.17|ARHGEF7|pc|chr13:111184937:111185225:+	0	+
#Deleted in new
chr13	111186853	111186990	ENSG00000102606.17|ARHGEF7|pc|chr13:111186853:111186990:+	0	+
#Deleted in new
chr13	111209265	111209346	ENSG00000102606.17|ARHGEF7|pc|chr13:111209265:111209346:+	0	+
#Deleted in new
chr13	111265483	111265710	ENSG00000102606.17|ARHGEF7|pc|chr13:111265483:111265710:+	0	+
#Deleted in new
chr13	111266826	111266887	ENSG00000102606.17|ARHGEF7|pc|chr13:111266826:111266887:+	0	+
#Deleted in new
chr13	111316183	111316257	ENSG00000153495.10|TEX29|pc|chr13:111316183:111316257:+	0	+
#Deleted in new
chr13	111320667	111320762	ENSG00000153495.10|TEX29|pc|chr13:111320667:111320762:+	0	+
#Deleted in new
chr13	111339293	111339438	ENSG00000153495.10|TEX29|pc|chr13:111339293:111339438:+	0	+
#Deleted in new
chr13	111342755	111342931	ENSG00000153495.10|TEX29|pc|chr13:111342755:111342931:+	0	+
#Split in new
chr13	111588200	111589941	ENSG00000204398.5|AL359649.1|lncRNA|chr13:111588200:111589941:+	0	+
#Deleted in new
chr13	111588290	111588344	ENSG00000204398.5|AL359649.1|lncRNA|chr13:111588290:111588344:+	0	+
#Deleted in new
chr13	111596008	111596047	ENSG00000215881.3|LINC02337|lncRNA|chr13:111596008:111596047:+	0	+
#Deleted in new
chr13	111641744	111642079	ENSG00000215881.3|LINC02337|lncRNA|chr13:111641744:111642079:+	0	+
#Deleted in new
chr13	111899984	111900083	ENSG00000226903.1|LINC00354|lncRNA|chr13:111899984:111900083:+	0	+
#Deleted in new
chr13	111899987	111900083	ENSG00000226903.1|LINC00354|lncRNA|chr13:111899987:111900083:+	0	+
#Partially deleted in new
chr13	112106094	112106238	ENSG00000229520.1|LINC00404|lncRNA|chr13:112106094:112106238:-	0	-
#Partially deleted in new
chr13	112107118	112107359	ENSG00000224243.1|LINC00403|lncRNA|chr13:112107118:112107359:+	0	+
#Deleted in new
chr13	112107711	112108015	ENSG00000224243.1|LINC00403|lncRNA|chr13:112107711:112108015:+	0	+
#Partially deleted in new
chr13	112197349	112197408	ENSG00000260102.1|LINC01070|lncRNA|chr13:112197349:112197408:+	0	+
#Split in new
chr13	112198230	112201000	ENSG00000260102.1|LINC01070|lncRNA|chr13:112198230:112201000:+	0	+
#Partially deleted in new
chr13	112313466	112319716	ENSG00000260343.1|LINC01043|lncRNA|chr13:112313466:112319716:+	0	+
#Deleted in new
chr13	112322566	112322756	ENSG00000223626.1|LINC01044|lncRNA|chr13:112322566:112322756:-	0	-
#Deleted in new
chr13	112327245	112327545	ENSG00000223626.1|LINC01044|lncRNA|chr13:112327245:112327545:-	0	-
#Deleted in new
chr13	112331058	112331225	ENSG00000223626.1|LINC01044|lncRNA|chr13:112331058:112331225:-	0	-
#Deleted in new
chr13	112378642	112378731	ENSG00000153498.11|SPACA7|pc|chr13:112378642:112378731:+	0	+
#Deleted in new
chr13	112382277	112382507	ENSG00000153498.11|SPACA7|pc|chr13:112382277:112382507:+	0	+
#Deleted in new
chr13	112498806	112498936	ENSG00000126216.13|TUBGCP3|pc|chr13:112498806:112498936:-	0	-
#Partially deleted in new
chr13	112546481	112547752	ENSG00000126216.13|TUBGCP3|pc|chr13:112546481:112547752:-	0	-
#Deleted in new
chr13	112584038	112584161	ENSG00000126216.13|TUBGCP3|pc|chr13:112584038:112584161:-	0	-
#Partially deleted in new
chr13	112602827	112606417	ENSG00000277159.1|AL139384.2|lncRNA|chr13:112602827:112606417:-	0	-
#Partially deleted in new
chr13	112683273	112684497	ENSG00000197595.4|ATP11AUN|lncRNA|chr13:112683273:112684497:+	0	+
#Deleted in new
chr13	112686768	112689815	ENSG00000274922.1|AL139384.1|lncRNA|chr13:112686768:112689815:-	0	-
#Deleted in new
chr13	112696830	112696911	ENSG00000068650.18|ATP11A|pc|chr13:112696830:112696911:+	0	+
#Deleted in new
chr13	112703286	112703342	ENSG00000068650.18|ATP11A|pc|chr13:112703286:112703342:+	0	+
#Deleted in new
chr13	112717321	112717675	ENSG00000068650.18|ATP11A|pc|chr13:112717321:112717675:+	0	+
#Deleted in new
chr13	112745448	112747440	ENSG00000232684.1|ATP11A-AS1|lncRNA|chr13:112745448:112747440:-	0	-
#Deleted in new
chr13	112754493	112754693	ENSG00000232684.1|ATP11A-AS1|lncRNA|chr13:112754493:112754693:-	0	-
#Deleted in new
chr13	112811565	112812158	ENSG00000277545.1|AL356752.1|lncRNA|chr13:112811565:112812158:+	0	+
#Deleted in new
chr13	112851540	112851854	ENSG00000068650.18|ATP11A|pc|chr13:112851540:112851854:+	0	+
#Partially deleted in new
chr13	112860286	112860798	ENSG00000068650.18|ATP11A|pc|chr13:112860286:112860798:+	0	+
#Deleted in new
chr13	112909252	112910619	ENSG00000126217.20|MCF2L|pc|chr13:112909252:112910619:+	0	+
#Deleted in new
chr13	112917113	112917524	ENSG00000126217.20|MCF2L|pc|chr13:112917113:112917524:+	0	+
#Partially deleted in new
chr13	112956042	112958164	ENSG00000126217.20|MCF2L|pc|chr13:112956042:112958164:+	0	+
#Deleted in new
chr13	112964834	112966131	ENSG00000267868.1|AL356740.1|lncRNA|chr13:112964834:112966131:-	0	-
#Deleted in new
chr13	113001269	113001425	ENSG00000126217.20|MCF2L|pc|chr13:113001269:113001425:+	0	+
#Deleted in new
chr13	113008777	113009424	ENSG00000269356.1|AL356740.2|lncRNA|chr13:113008777:113009424:+	0	+
#Deleted in new
chr13	113026868	113027068	ENSG00000126217.20|MCF2L|pc|chr13:113026868:113027068:+	0	+
#Deleted in new
chr13	113040347	113041008	ENSG00000126217.20|MCF2L|pc|chr13:113040347:113041008:+	0	+
#Partially deleted in new
chr13	113046597	113046855	ENSG00000126217.20|MCF2L|pc|chr13:113046597:113046855:+	0	+
#Deleted in new
chr13	113052506	113052753	ENSG00000126217.20|MCF2L|pc|chr13:113052506:113052753:+	0	+
#Partially deleted in new
chr13	113054301	113054905	ENSG00000126217.20|MCF2L|pc|chr13:113054301:113054905:+	0	+
#Partially deleted in new
chr13	113093600	113094635	ENSG00000126217.20|MCF2L|pc|chr13:113093600:113094635:+	0	+
#Deleted in new
chr13	113094968	113095178	ENSG00000126217.20|MCF2L|pc|chr13:113094968:113095178:+	0	+
#Partially deleted in new
chr13	113095221	113096653	ENSG00000126217.20|MCF2L|pc|chr13:113095221:113096653:+	0	+
#Deleted in new
chr13	113106844	113106910	ENSG00000057593.13|F7|pc|chr13:113106844:113106910:+	0	+
#Deleted in new
chr13	113128154	113128425	ENSG00000231882.1|F10-AS1|lncRNA|chr13:113128154:113128425:-	0	-
#Deleted in new
chr13	113128734	113128880	ENSG00000231882.1|F10-AS1|lncRNA|chr13:113128734:113128880:-	0	-
#Deleted in new
chr13	113129993	113130306	ENSG00000126218.11|F10|pc|chr13:113129993:113130306:+	0	+
#Split in new
chr13	113153143	113154002	ENSG00000283828.1|AL137002.2|lncRNA|chr13:113153143:113154002:-	0	-
#Deleted in new
chr13	113158653	113158730	ENSG00000126231.13|PROZ|pc|chr13:113158653:113158730:+	0	+
#Deleted in new
chr13	113159198	113159264	ENSG00000126231.13|PROZ|pc|chr13:113159198:113159264:+	0	+
#Deleted in new
chr13	113166097	113166127	ENSG00000126231.13|PROZ|pc|chr13:113166097:113166127:+	0	+
#Deleted in new
chr13	113166344	113166426	ENSG00000126231.13|PROZ|pc|chr13:113166344:113166426:+	0	+
#Partially deleted in new
chr13	113185484	113188608	ENSG00000126226.21|PCID2|pc|chr13:113185484:113188608:-	0	-
#Deleted in new
chr13	113187199	113187399	ENSG00000126226.21|PCID2|pc|chr13:113187199:113187399:-	0	-
#Deleted in new
chr13	113208023	113208106	ENSG00000126226.21|PCID2|pc|chr13:113208023:113208106:-	0	-
#Partially deleted in new
chr13	113208023	113208650	ENSG00000126226.21|PCID2|pc|chr13:113208023:113208650:-	0	-
#Partially deleted in new
chr13	113208192	113208607	ENSG00000139842.14|CUL4A|pc|chr13:113208192:113208607:+	0	+
#Deleted in new
chr13	113229641	113230030	ENSG00000139842.14|CUL4A|pc|chr13:113229641:113230030:+	0	+
#Deleted in new
chr13	113229641	113230212	ENSG00000139842.14|CUL4A|pc|chr13:113229641:113230212:+	0	+
#Partially deleted in new
chr13	113304931	113306606	ENSG00000185896.10|LAMP1|pc|chr13:113304931:113306606:+	0	+
#Partially deleted in new
chr13	113320344	113321470	ENSG00000185896.10|LAMP1|pc|chr13:113320344:113321470:+	0	+
#Partially deleted in new
chr13	113324844	113325846	ENSG00000139835.13|GRTP1|pc|chr13:113324844:113325846:-	0	-
#Partially deleted in new
chr13	113325061	113325846	ENSG00000139835.13|GRTP1|pc|chr13:113325061:113325846:-	0	-
#Deleted in new
chr13	113339449	113339958	ENSG00000276434.1|AL136221.1|lncRNA|chr13:113339449:113339958:-	0	-
#Deleted in new
chr13	113351672	113351970	ENSG00000225083.1|GRTP1-AS1|lncRNA|chr13:113351672:113351970:+	0	+
#Deleted in new
chr13	113351815	113351970	ENSG00000225083.1|GRTP1-AS1|lncRNA|chr13:113351815:113351970:+	0	+
#Deleted in new
chr13	113359616	113360284	ENSG00000139835.13|GRTP1|pc|chr13:113359616:113360284:-	0	-
#Deleted in new
chr13	113361558	113361868	ENSG00000225083.1|GRTP1-AS1|lncRNA|chr13:113361558:113361868:+	0	+
#Deleted in new
chr13	113448998	113449142	ENSG00000153531.13|ADPRHL1|pc|chr13:113448998:113449142:-	0	-
#Deleted in new
chr13	113448998	113449277	ENSG00000153531.13|ADPRHL1|pc|chr13:113448998:113449277:-	0	-
#Deleted in new
chr13	113468900	113468954	ENSG00000233613.5|DCUN1D2-AS|lncRNA|chr13:113468900:113468954:+	0	+
#Deleted in new
chr13	113475389	113475432	ENSG00000233613.5|DCUN1D2-AS|lncRNA|chr13:113475389:113475432:+	0	+
#Deleted in new
chr13	113475859	113476135	ENSG00000233613.5|DCUN1D2-AS|lncRNA|chr13:113475859:113476135:+	0	+
#Deleted in new
chr13	113489089	113489173	ENSG00000150401.14|DCUN1D2|pc|chr13:113489089:113489173:-	0	-
#Deleted in new
chr13	113489089	113489253	ENSG00000150401.14|DCUN1D2|pc|chr13:113489089:113489253:-	0	-
#Split in new
chr13	113503495	113506062	ENSG00000150403.17|TMCO3|pc|chr13:113503495:113506062:+	0	+
#Deleted in new
chr13	113511746	113511987	ENSG00000276916.1|AL442125.2|lncRNA|chr13:113511746:113511987:+	0	+
#Deleted in new
chr13	113514296	113514473	ENSG00000276916.1|AL442125.2|lncRNA|chr13:113514296:113514473:+	0	+
#Deleted in new
chr13	113527259	113530621	ENSG00000276248.1|AL442125.1|lncRNA|chr13:113527259:113530621:+	0	+
#Partially deleted in new
chr13	113534044	113535286	ENSG00000150403.17|TMCO3|pc|chr13:113534044:113535286:+	0	+
#Deleted in new
chr13	113545754	113545897	ENSG00000150403.17|TMCO3|pc|chr13:113545754:113545897:+	0	+
#Deleted in new
chr13	113551336	113554590	ENSG00000150403.17|TMCO3|pc|chr13:113551336:113554590:+	0	+
#Deleted in new
chr13	113551428	113551562	ENSG00000150403.17|TMCO3|pc|chr13:113551428:113551562:+	0	+
#Deleted in new
chr13	113552031	113552214	ENSG00000150403.17|TMCO3|pc|chr13:113552031:113552214:+	0	+
#Deleted in new
chr13	113637150	113637242	ENSG00000198176.12|TFDP1|pc|chr13:113637150:113637242:+	0	+
#Deleted in new
chr13	113726485	113726537	ENSG00000185974.6|GRK1|pc|chr13:113726485:113726537:+	0	+
#Partially deleted in new
chr13	113734474	113737735	ENSG00000185974.6|GRK1|pc|chr13:113734474:113737735:+	0	+
#Partially deleted in new
chr13	113735067	113737735	ENSG00000185974.6|GRK1|pc|chr13:113735067:113737735:+	0	+
#Deleted in new
chr13	113748510	113751089	ENSG00000279770.1|LINC00552|lncRNA|chr13:113748510:113751089:-	0	-
#Deleted in new
chr13	113768135	113768265	ENSG00000184497.12|TMEM255B|pc|chr13:113768135:113768265:+	0	+
#Deleted in new
chr13	113768886	113768969	ENSG00000184497.12|TMEM255B|pc|chr13:113768886:113768969:+	0	+
#Deleted in new
chr13	113769592	113769815	ENSG00000184497.12|TMEM255B|pc|chr13:113769592:113769815:+	0	+
#Deleted in new
chr13	113803049	113803332	ENSG00000184497.12|TMEM255B|pc|chr13:113803049:113803332:+	0	+
#Split in new
chr13	113811735	113816995	ENSG00000184497.12|TMEM255B|pc|chr13:113811735:113816995:+	0	+
#Deleted in new
chr13	113815629	113815691	ENSG00000233695.2|GAS6-AS1|lncRNA|chr13:113815629:113815691:+	0	+
#Deleted in new
chr13	113833491	113833579	ENSG00000233695.2|GAS6-AS1|lncRNA|chr13:113833491:113833579:+	0	+
#Duplicated in new
chr13	113838076	113838247	ENSG00000233695.2|GAS6-AS1|lncRNA|chr13:113838076:113838247:+	0	+
#Split in new
chr13	113839083	113845744	ENSG00000233695.2|GAS6-AS1|lncRNA|chr13:113839083:113845744:+	0	+
#Partially deleted in new
chr13	113842489	113844306	ENSG00000233695.2|GAS6-AS1|lncRNA|chr13:113842489:113844306:+	0	+
#Deleted in new
chr13	113877607	113877689	ENSG00000237699.1|BX072579.1|lncRNA|chr13:113877607:113877689:+	0	+
#Deleted in new
chr13	113878488	113879332	ENSG00000226921.6|LINC00454|lncRNA|chr13:113878488:113879332:-	0	-
#Deleted in new
chr13	113878699	113879332	ENSG00000226921.6|LINC00454|lncRNA|chr13:113878699:113879332:-	0	-
#Deleted in new
chr13	113879003	113879332	ENSG00000226921.6|LINC00454|lncRNA|chr13:113879003:113879332:-	0	-
#Deleted in new
chr13	113879010	113879332	ENSG00000226921.6|LINC00454|lncRNA|chr13:113879010:113879332:-	0	-
#Deleted in new
chr13	113879114	113879376	ENSG00000237699.1|BX072579.1|lncRNA|chr13:113879114:113879376:+	0	+
#Deleted in new
chr13	113880531	113880895	ENSG00000226921.6|LINC00454|lncRNA|chr13:113880531:113880895:-	0	-
#Deleted in new
chr13	113880698	113880895	ENSG00000226921.6|LINC00454|lncRNA|chr13:113880698:113880895:-	0	-
#Deleted in new
chr13	113881347	113881486	ENSG00000226921.6|LINC00454|lncRNA|chr13:113881347:113881486:-	0	-
#Deleted in new
chr13	113881347	113881492	ENSG00000226921.6|LINC00454|lncRNA|chr13:113881347:113881492:-	0	-
#Deleted in new
chr13	113881594	113881930	ENSG00000226921.6|LINC00454|lncRNA|chr13:113881594:113881930:-	0	-
#Deleted in new
chr13	113881959	113882202	ENSG00000226921.6|LINC00454|lncRNA|chr13:113881959:113882202:-	0	-
#Deleted in new
chr13	113883230	113883328	ENSG00000226921.6|LINC00454|lncRNA|chr13:113883230:113883328:-	0	-
#Deleted in new
chr13	113883414	113883445	ENSG00000226921.6|LINC00454|lncRNA|chr13:113883414:113883445:-	0	-
#Deleted in new
chr13	113883414	113883555	ENSG00000226921.6|LINC00454|lncRNA|chr13:113883414:113883555:-	0	-
#Deleted in new
chr13	113883588	113883651	ENSG00000226921.6|LINC00454|lncRNA|chr13:113883588:113883651:-	0	-
#Deleted in new
chr13	113883666	113883809	ENSG00000274766.1|BX072579.2|lncRNA|chr13:113883666:113883809:+	0	+
#Deleted in new
chr13	113884953	113885335	ENSG00000274766.1|BX072579.2|lncRNA|chr13:113884953:113885335:+	0	+
#Deleted in new
chr13	113888305	113888431	ENSG00000229373.8|LINC00452|lncRNA|chr13:113888305:113888431:+	0	+
#Deleted in new
chr13	113895102	113895249	ENSG00000229373.8|LINC00452|lncRNA|chr13:113895102:113895249:+	0	+
#Deleted in new
chr13	113898525	113898678	ENSG00000229373.8|LINC00452|lncRNA|chr13:113898525:113898678:+	0	+
#Deleted in new
chr13	113898525	113898687	ENSG00000229373.8|LINC00452|lncRNA|chr13:113898525:113898687:+	0	+
#Deleted in new
chr13	113898764	113898872	ENSG00000229373.8|LINC00452|lncRNA|chr13:113898764:113898872:+	0	+
#Deleted in new
chr13	113901790	113902014	ENSG00000229373.8|LINC00452|lncRNA|chr13:113901790:113902014:+	0	+
#Deleted in new
chr13	113915795	113916103	ENSG00000229373.8|LINC00452|lncRNA|chr13:113915795:113916103:+	0	+
#Deleted in new
chr13	113916864	113916944	ENSG00000229373.8|LINC00452|lncRNA|chr13:113916864:113916944:+	0	+
#Deleted in new
chr13	113919434	113919654	ENSG00000229373.8|LINC00452|lncRNA|chr13:113919434:113919654:+	0	+
#Deleted in new
chr13	113920722	113920920	ENSG00000229373.8|LINC00452|lncRNA|chr13:113920722:113920920:+	0	+
#Deleted in new
chr13	113921049	113921179	ENSG00000229373.8|LINC00452|lncRNA|chr13:113921049:113921179:+	0	+
#Deleted in new
chr13	113921049	113921317	ENSG00000229373.8|LINC00452|lncRNA|chr13:113921049:113921317:+	0	+
#Deleted in new
chr13	113921775	113923512	ENSG00000229373.8|LINC00452|lncRNA|chr13:113921775:113923512:+	0	+
#Deleted in new
chr13	113970362	113970409	ENSG00000283199.1|FP565324.1|pc|chr13:113970362:113970409:-	0	-
#Partially deleted in new
chr13	114035625	114036193	ENSG00000185989.10|RASA3|pc|chr13:114035625:114036193:-	0	-
#Deleted in new
chr13	114107568	114107768	ENSG00000232487.1|RASA3-IT1|lncRNA|chr13:114107568:114107768:-	0	-
#Deleted in new
chr13	114108640	114108820	ENSG00000232487.1|RASA3-IT1|lncRNA|chr13:114108640:114108820:-	0	-
#Deleted in new
chr13	114175484	114175645	ENSG00000283347.1|AL160396.1|lncRNA|chr13:114175484:114175645:-	0	-
#Deleted in new
chr13	114199703	114199742	ENSG00000283361.1|AL160396.2|pc|chr13:114199703:114199742:+	0	+
#Deleted in new
chr13	114214119	114214288	ENSG00000283347.1|AL160396.1|lncRNA|chr13:114214119:114214288:-	0	-
#Deleted in new
chr13	114215655	114215835	ENSG00000283347.1|AL160396.1|lncRNA|chr13:114215655:114215835:-	0	-
#Deleted in new
chr13	114264211	114264261	ENSG00000130177.14|CDC16|pc|chr13:114264211:114264261:+	0	+
#Deleted in new
chr13	114304788	114304949	ENSG00000169062.14|UPF3A|pc|chr13:114304788:114304949:+	0	+
#Deleted in new
chr13	114304788	114305808	ENSG00000169062.14|UPF3A|pc|chr13:114304788:114305808:+	0	+
#Deleted in new
chr13	114304788	114305817	ENSG00000169062.14|UPF3A|pc|chr13:114304788:114305817:+	0	+
#Deleted in new
chr13	114321109	114321232	ENSG00000198824.5|CHAMP1|pc|chr13:114321109:114321232:+	0	+
#Deleted in new
chr13	114321125	114321232	ENSG00000198824.5|CHAMP1|pc|chr13:114321125:114321232:+	0	+
#Deleted in new
chr13	114321140	114321232	ENSG00000198824.5|CHAMP1|pc|chr13:114321140:114321232:+	0	+
#Deleted in new
chr13	114322062	114322438	ENSG00000198824.5|CHAMP1|pc|chr13:114322062:114322438:+	0	+
#Deleted in new
chr13	114329558	114329845	ENSG00000229723.1|LINC01054|lncRNA|chr13:114329558:114329845:-	0	-
#Deleted in new
chr13	114330665	114330778	ENSG00000229723.1|LINC01054|lncRNA|chr13:114330665:114330778:-	0	-
#Deleted in new
chr13	114333834	114333948	ENSG00000229723.1|LINC01054|lncRNA|chr13:114333834:114333948:-	0	-
#Deleted in new
chr1	31193815	31193920	ENSG00000084628.9|NKAIN1|pc|chr1:31193815:31193920:-	0	-
#Partially deleted in new
chr1	31260954	31261077	ENSG00000060688.12|SNRNP40|pc|chr1:31260954:31261077:-	0	-
#Partially deleted in new
chr1	31281373	31282483	ENSG00000060688.12|SNRNP40|pc|chr1:31281373:31282483:-	0	-
#Deleted in new
chr1	31318166	31318236	ENSG00000121766.15|ZCCHC17|pc|chr1:31318166:31318236:+	0	+
#Deleted in new
chr1	31333066	31333182	ENSG00000229044.1|AL451070.1|lncRNA|chr1:31333066:31333182:-	0	-
#Deleted in new
chr1	31376355	31376427	ENSG00000121769.7|FABP3|pc|chr1:31376355:31376427:-	0	-
#Deleted in new
chr1	31507295	31507350	ENSG00000284543.1|LINC01226|lncRNA|chr1:31507295:31507350:+	0	+
#Deleted in new
chr1	31518355	31518836	ENSG00000284543.1|LINC01226|lncRNA|chr1:31518355:31518836:+	0	+
#Deleted in new
chr1	31520945	31521063	ENSG00000284543.1|LINC01226|lncRNA|chr1:31520945:31521063:+	0	+
#Deleted in new
chr1	31522024	31522358	ENSG00000284543.1|LINC01226|lncRNA|chr1:31522024:31522358:+	0	+
#Deleted in new
chr1	31522024	31526444	ENSG00000284543.1|LINC01226|lncRNA|chr1:31522024:31526444:+	0	+
#Deleted in new
chr1	31522205	31522236	ENSG00000284543.1|LINC01226|lncRNA|chr1:31522205:31522236:+	0	+
#Deleted in new
chr1	31522362	31522725	ENSG00000284543.1|LINC01226|lncRNA|chr1:31522362:31522725:+	0	+
#Deleted in new
chr1	31522830	31523589	ENSG00000284543.1|LINC01226|lncRNA|chr1:31522830:31523589:+	0	+
#Deleted in new
chr1	31536268	31536409	ENSG00000284543.1|LINC01226|lncRNA|chr1:31536268:31536409:+	0	+
#Deleted in new
chr1	31536268	31536563	ENSG00000284543.1|LINC01226|lncRNA|chr1:31536268:31536563:+	0	+
#Deleted in new
chr1	31536271	31536409	ENSG00000284543.1|LINC01226|lncRNA|chr1:31536271:31536409:+	0	+
#Deleted in new
chr1	31538974	31539092	ENSG00000284543.1|LINC01226|lncRNA|chr1:31538974:31539092:+	0	+
#Deleted in new
chr1	31540380	31543987	ENSG00000284543.1|LINC01226|lncRNA|chr1:31540380:31543987:+	0	+
#Deleted in new
chr1	31540576	31540663	ENSG00000284543.1|LINC01226|lncRNA|chr1:31540576:31540663:+	0	+
#Deleted in new
chr1	31540576	31540769	ENSG00000284543.1|LINC01226|lncRNA|chr1:31540576:31540769:+	0	+
#Deleted in new
chr1	31540807	31540885	ENSG00000284543.1|LINC01226|lncRNA|chr1:31540807:31540885:+	0	+
#Deleted in new
chr1	31551534	31551657	ENSG00000284543.1|LINC01226|lncRNA|chr1:31551534:31551657:+	0	+
#Deleted in new
chr1	31552429	31552563	ENSG00000284543.1|LINC01226|lncRNA|chr1:31552429:31552563:+	0	+
#Deleted in new
chr1	31568165	31568280	ENSG00000284543.1|LINC01226|lncRNA|chr1:31568165:31568280:+	0	+
#Deleted in new
chr1	31572034	31572303	ENSG00000229167.1|AC114488.1|lncRNA|chr1:31572034:31572303:-	0	-
#Partially deleted in new
chr1	31649044	31649371	ENSG00000264078.1|AC114488.3|lncRNA|chr1:31649044:31649371:+	0	+
#Partially deleted in new
chr1	31656131	31656185	ENSG00000235790.7|AC114488.2|lncRNA|chr1:31656131:31656185:+	0	+
#Deleted in new
chr13	18195296	18195411	ENSG00000279516.1|FAM230C|lncRNA|chr13:18195296:18195411:+	0	+
#Deleted in new
chr13	18218998	18219057	ENSG00000279516.1|FAM230C|lncRNA|chr13:18218998:18219057:+	0	+
#Deleted in new
chr13	18219525	18219550	ENSG00000279516.1|FAM230C|lncRNA|chr13:18219525:18219550:+	0	+
#Deleted in new
chr13	18222494	18222581	ENSG00000279516.1|FAM230C|lncRNA|chr13:18222494:18222581:+	0	+
#Deleted in new
chr13	18227478	18227544	ENSG00000279516.1|FAM230C|lncRNA|chr13:18227478:18227544:+	0	+
#Deleted in new
chr13	18229546	18229608	ENSG00000279516.1|FAM230C|lncRNA|chr13:18229546:18229608:+	0	+
#Deleted in new
chr13	18230073	18230107	ENSG00000279516.1|FAM230C|lncRNA|chr13:18230073:18230107:+	0	+
#Deleted in new
chr13	18230502	18232024	ENSG00000279516.1|FAM230C|lncRNA|chr13:18230502:18232024:+	0	+
#Deleted in new
chr1	31851912	31852014	ENSG00000269967.1|AL136115.2|lncRNA|chr1:31851912:31852014:-	0	-
#Deleted in new
chr13	18550289	18550697	ENSG00000231238.1|LINC00349|lncRNA|chr13:18550289:18550697:+	0	+
#Deleted in new
chr1	31855440	31855568	ENSG00000203620.2|AL354919.1|lncRNA|chr1:31855440:31855568:-	0	-
#Deleted in new
chr13	18611569	18611675	ENSG00000229788.1|LINC00388|lncRNA|chr13:18611569:18611675:-	0	-
#Deleted in new
chr13	18672826	18673108	ENSG00000231914.1|LINC00387|lncRNA|chr13:18672826:18673108:+	0	+
#Deleted in new
chr13	18675987	18676163	ENSG00000231914.1|LINC00387|lncRNA|chr13:18675987:18676163:+	0	+
#Deleted in new
chr13	18905438	18905576	ENSG00000226250.1|LINC00408|lncRNA|chr13:18905438:18905576:+	0	+
#Deleted in new
chr13	18906026	18906110	ENSG00000226250.1|LINC00408|lncRNA|chr13:18906026:18906110:+	0	+
#Deleted in new
chr13	18906496	18906658	ENSG00000226250.1|LINC00408|lncRNA|chr13:18906496:18906658:+	0	+
#Deleted in new
chr13	18907634	18907810	ENSG00000226250.1|LINC00408|lncRNA|chr13:18907634:18907810:+	0	+
#Deleted in new
chr13	18921888	18922409	ENSG00000231358.2|AL355516.1|lncRNA|chr13:18921888:18922409:-	0	-
#Deleted in new
chr13	18923540	18923765	ENSG00000231358.2|AL355516.1|lncRNA|chr13:18923540:18923765:-	0	-
#Deleted in new
chr13	19011432	19011564	ENSG00000232685.4|LINC00442|lncRNA|chr13:19011432:19011564:+	0	+
#Deleted in new
chr13	19011432	19011849	ENSG00000232685.4|LINC00442|lncRNA|chr13:19011432:19011849:+	0	+
#Deleted in new
chr13	19027836	19027908	ENSG00000226619.1|AL137001.1|lncRNA|chr13:19027836:19027908:+	0	+
#Deleted in new
chr13	19028574	19028701	ENSG00000226619.1|AL137001.1|lncRNA|chr13:19028574:19028701:+	0	+
#Deleted in new
chr1	31912980	31913023	ENSG00000184007.18|PTP4A2|pc|chr1:31912980:31913023:-	0	-
#Deleted in new
chr1	31913002	31913023	ENSG00000184007.18|PTP4A2|pc|chr1:31913002:31913023:-	0	-
#Deleted in new
chr1	31913786	31913843	ENSG00000184007.18|PTP4A2|pc|chr1:31913786:31913843:-	0	-
#Deleted in new
chr1	31913831	31913843	ENSG00000184007.18|PTP4A2|pc|chr1:31913831:31913843:-	0	-
#Partially deleted in new
chr1	31915539	31915987	ENSG00000184007.18|PTP4A2|pc|chr1:31915539:31915987:-	0	-
#Deleted in new
chr1	31932671	31932700	ENSG00000184007.18|PTP4A2|pc|chr1:31932671:31932700:-	0	-
#Deleted in new
chr1	31933019	31933210	ENSG00000228634.1|AL136115.1|lncRNA|chr1:31933019:31933210:+	0	+
#Deleted in new
chr1	31933649	31933975	ENSG00000228634.1|AL136115.1|lncRNA|chr1:31933649:31933975:+	0	+
#Deleted in new
chr13	19345048	19345217	ENSG00000236834.1|LINC00421|lncRNA|chr13:19345048:19345217:+	0	+
#Deleted in new
chr1	31937754	31937782	ENSG00000184007.18|PTP4A2|pc|chr1:31937754:31937782:-	0	-
#Deleted in new
chr1	31937754	31937785	ENSG00000184007.18|PTP4A2|pc|chr1:31937754:31937785:-	0	-
#Partially deleted in new
chr1	31937777	31937818	ENSG00000184007.18|PTP4A2|pc|chr1:31937777:31937818:-	0	-
#Partially deleted in new
chr13	19408041	19408936	ENSG00000229791.1|AL356259.1|lncRNA|chr13:19408041:19408936:-	0	-
#Deleted in new
chr13	19409365	19409529	ENSG00000229791.1|AL356259.1|lncRNA|chr13:19409365:19409529:-	0	-
#Deleted in new
chr13	19425706	19425833	ENSG00000132958.17|TPTE2|pc|chr13:19425706:19425833:-	0	-
#Deleted in new
chr13	19492849	19492903	ENSG00000132958.17|TPTE2|pc|chr13:19492849:19492903:-	0	-
#Deleted in new
chr13	19493447	19493501	ENSG00000132958.17|TPTE2|pc|chr13:19493447:19493501:-	0	-
#Deleted in new
chr13	19503223	19503234	ENSG00000132958.17|TPTE2|pc|chr13:19503223:19503234:-	0	-
#Deleted in new
chr13	19503223	19503277	ENSG00000132958.17|TPTE2|pc|chr13:19503223:19503277:-	0	-
#Deleted in new
chr13	19503223	19503279	ENSG00000132958.17|TPTE2|pc|chr13:19503223:19503279:-	0	-
#Deleted in new
chr13	19505746	19505940	ENSG00000132958.17|TPTE2|pc|chr13:19505746:19505940:-	0	-
#Deleted in new
chr13	19536595	19536762	ENSG00000132958.17|TPTE2|pc|chr13:19536595:19536762:-	0	-
#Deleted in new
chr13	19587117	19587156	ENSG00000225316.1|LINC00350|lncRNA|chr13:19587117:19587156:+	0	+
#Deleted in new
chr13	19587967	19588350	ENSG00000225316.1|LINC00350|lncRNA|chr13:19587967:19588350:+	0	+
#Deleted in new
chr13	19660938	19661090	ENSG00000196199.13|MPHOSPH8|pc|chr13:19660938:19661090:+	0	+
#Partially deleted in new
chr13	19670839	19670964	ENSG00000196199.13|MPHOSPH8|pc|chr13:19670839:19670964:+	0	+
#Partially deleted in new
chr13	19671833	19673459	ENSG00000196199.13|MPHOSPH8|pc|chr13:19671833:19673459:+	0	+
#Deleted in new
chr13	19674623	19674732	ENSG00000226352.2|PSPC1-AS2|lncRNA|chr13:19674623:19674732:+	0	+
#Deleted in new
chr13	19674751	19674984	ENSG00000121390.18|PSPC1|pc|chr13:19674751:19674984:-	0	-
#Deleted in new
chr13	19674755	19674984	ENSG00000121390.18|PSPC1|pc|chr13:19674755:19674984:-	0	-
#Deleted in new
chr13	19674755	19675653	ENSG00000121390.18|PSPC1|pc|chr13:19674755:19675653:-	0	-
#Deleted in new
chr13	19675387	19675653	ENSG00000121390.18|PSPC1|pc|chr13:19675387:19675653:-	0	-
#Deleted in new
chr13	19675428	19675653	ENSG00000121390.18|PSPC1|pc|chr13:19675428:19675653:-	0	-
#Deleted in new
chr13	19675617	19675884	ENSG00000226352.2|PSPC1-AS2|lncRNA|chr13:19675617:19675884:+	0	+
#Deleted in new
chr13	19677723	19677823	ENSG00000121390.18|PSPC1|pc|chr13:19677723:19677823:-	0	-
#Deleted in new
chr13	19677723	19677938	ENSG00000121390.18|PSPC1|pc|chr13:19677723:19677938:-	0	-
#Partially deleted in new
chr13	19677723	19679110	ENSG00000121390.18|PSPC1|pc|chr13:19677723:19679110:-	0	-
#Deleted in new
chr13	19699379	19699398	ENSG00000121390.18|PSPC1|pc|chr13:19699379:19699398:-	0	-
#Deleted in new
chr1	31972188	31973878	ENSG00000284702.1|AL136115.3|lncRNA|chr1:31972188:31973878:-	0	-
#Deleted in new
chr13	19841826	19842008	ENSG00000223576.2|AL355001.1|lncRNA|chr13:19841826:19842008:+	0	+
#Deleted in new
chr13	19843410	19843672	ENSG00000223576.2|AL355001.1|lncRNA|chr13:19843410:19843672:+	0	+
#Deleted in new
chr13	19965219	19965281	ENSG00000121741.16|ZMYM2|pc|chr13:19965219:19965281:+	0	+
#Deleted in new
chr13	19970024	19970071	ENSG00000121741.16|ZMYM2|pc|chr13:19970024:19970071:+	0	+
#Partially deleted in new
chr13	20024393	20026762	ENSG00000121741.16|ZMYM2|pc|chr13:20024393:20026762:+	0	+
#Deleted in new
chr13	20025306	20025375	ENSG00000121741.16|ZMYM2|pc|chr13:20025306:20025375:+	0	+
#Deleted in new
chr13	20068088	20068349	ENSG00000121741.16|ZMYM2|pc|chr13:20068088:20068349:+	0	+
#Deleted in new
chr13	20092631	20094144	ENSG00000279951.1|AL138688.2|lncRNA|chr13:20092631:20094144:+	0	+
#Deleted in new
chr13	20225281	20225683	ENSG00000121742.16|GJB6|pc|chr13:20225281:20225683:-	0	-
#Deleted in new
chr13	20515720	20515820	ENSG00000165475.13|CRYL1|pc|chr13:20515720:20515820:-	0	-
#Deleted in new
chr1	32052290	32052732	ENSG00000203325.3|AL445248.1|lncRNA|chr1:32052290:32052732:-	0	-
#Deleted in new
chr1	32054470	32054514	ENSG00000203325.3|AL445248.1|lncRNA|chr1:32054470:32054514:-	0	-
#Deleted in new
chr13	20564707	20565008	ENSG00000277020.4|AL590096.1|lncRNA|chr13:20564707:20565008:-	0	-
#Deleted in new
chr13	20564771	20565008	ENSG00000277020.4|AL590096.1|lncRNA|chr13:20564771:20565008:-	0	-
#Deleted in new
chr13	20565500	20565550	ENSG00000277020.4|AL590096.1|lncRNA|chr13:20565500:20565550:-	0	-
#Deleted in new
chr13	20566984	20567045	ENSG00000277020.4|AL590096.1|lncRNA|chr13:20566984:20567045:-	0	-
#Partially deleted in new
chr13	20567669	20567997	ENSG00000032742.17|IFT88|pc|chr13:20567669:20567997:+	0	+
#Deleted in new
chr13	20567884	20567997	ENSG00000032742.17|IFT88|pc|chr13:20567884:20567997:+	0	+
#Partially deleted in new
chr1	3205987	3208664	ENSG00000279839.1|AL512383.1|lncRNA|chr1:3205987:3208664:+	0	+
#Deleted in new
chr13	20614356	20614435	ENSG00000032742.17|IFT88|pc|chr13:20614356:20614435:+	0	+
#Partially deleted in new
chr13	20703342	20703444	ENSG00000172458.4|IL17D|pc|chr13:20703342:20703444:+	0	+
#Partially deleted in new
chr1	32072030	32072452	ENSG00000121775.17|TMEM39B|pc|chr1:32072030:32072452:+	0	+
#Deleted in new
chr1	32076130	32076254	ENSG00000121775.17|TMEM39B|pc|chr1:32076130:32076254:+	0	+
#Deleted in new
chr13	20768875	20769375	ENSG00000275485.1|AL512652.1|lncRNA|chr13:20768875:20769375:-	0	-
#Partially deleted in new
chr13	20773856	20773918	ENSG00000150456.10|EEF1AKMT1|pc|chr13:20773856:20773918:-	0	-
#Partially deleted in new
chr13	21005156	21005701	ENSG00000233851.1|LATS2-AS1|lncRNA|chr13:21005156:21005701:+	0	+
#Partially deleted in new
chr13	21018035	21018122	ENSG00000233851.1|LATS2-AS1|lncRNA|chr13:21018035:21018122:+	0	+
#Deleted in new
chr13	21023062	21023129	ENSG00000150457.8|LATS2|pc|chr13:21023062:21023129:-	0	-
#Duplicated in new
chr13	21147185	21149082	ENSG00000150459.12|SAP18|pc|chr13:21147185:21149082:+	0	+
#Duplicated in new
chr13	21147185	21149084	ENSG00000150459.12|SAP18|pc|chr13:21147185:21149084:+	0	+
#Partially deleted in new
chr13	21154696	21155150	ENSG00000165480.15|SKA3|pc|chr13:21154696:21155150:-	0	-
#Partially deleted in new
chr13	21176911	21179084	ENSG00000173141.4|MRPL57|pc|chr13:21176911:21179084:+	0	+
#Deleted in new
chr13	21303514	21303820	ENSG00000224429.7|LINC00539|lncRNA|chr13:21303514:21303820:-	0	-
#Deleted in new
chr13	21311041	21311118	ENSG00000224429.7|LINC00539|lncRNA|chr13:21311041:21311118:-	0	-
#Deleted in new
chr13	21312150	21312365	ENSG00000224429.7|LINC00539|lncRNA|chr13:21312150:21312365:-	0	-
#Deleted in new
chr13	21312451	21312555	ENSG00000224429.7|LINC00539|lncRNA|chr13:21312451:21312555:-	0	-
#Deleted in new
chr13	21344665	21344786	ENSG00000224429.7|LINC00539|lncRNA|chr13:21344665:21344786:-	0	-
#Deleted in new
chr13	21344665	21344845	ENSG00000224429.7|LINC00539|lncRNA|chr13:21344665:21344845:-	0	-
#Deleted in new
chr13	21347311	21347539	ENSG00000224429.7|LINC00539|lncRNA|chr13:21347311:21347539:-	0	-
#Deleted in new
chr13	21376976	21377208	ENSG00000236953.1|ZDHHC20-IT1|lncRNA|chr13:21376976:21377208:-	0	-
#Deleted in new
chr13	21377666	21377874	ENSG00000236953.1|ZDHHC20-IT1|lncRNA|chr13:21377666:21377874:-	0	-
#Deleted in new
chr13	21390194	21390254	ENSG00000180776.15|ZDHHC20|pc|chr13:21390194:21390254:-	0	-
#Deleted in new
chr13	21582873	21582923	ENSG00000165487.13|MICU2|pc|chr13:21582873:21582923:-	0	-
#Deleted in new
chr13	21602743	21602818	ENSG00000165487.13|MICU2|pc|chr13:21602743:21602818:-	0	-
#Deleted in new
chr13	21872769	21873222	ENSG00000226722.3|LINC00424|lncRNA|chr13:21872769:21873222:-	0	-
#Deleted in new
chr13	21872795	21873222	ENSG00000226722.3|LINC00424|lncRNA|chr13:21872795:21873222:-	0	-
#Deleted in new
chr13	21878134	21878160	ENSG00000226722.3|LINC00424|lncRNA|chr13:21878134:21878160:-	0	-
#Deleted in new
chr13	22040974	22041384	ENSG00000276476.2|LINC00540|lncRNA|chr13:22040974:22041384:+	0	+
#Deleted in new
chr1	32217436	32217577	ENSG00000160055.19|TMEM234|pc|chr1:32217436:32217577:-	0	-
#Deleted in new
chr13	22894655	22895038	ENSG00000262619.1|LINC00621|lncRNA|chr13:22894655:22895038:-	0	-
#Deleted in new
chr13	22896360	22896502	ENSG00000262619.1|LINC00621|lncRNA|chr13:22896360:22896502:-	0	-
#Deleted in new
chr13	23169834	23170052	ENSG00000229483.2|LINC00362|lncRNA|chr13:23169834:23170052:-	0	-
#Deleted in new
chr13	23170551	23170597	ENSG00000229483.2|LINC00362|lncRNA|chr13:23170551:23170597:-	0	-
#Deleted in new
chr13	23418970	23419301	ENSG00000229558.2|SACS-AS1|lncRNA|chr13:23418970:23419301:+	0	+
#Deleted in new
chr13	23466570	23467163	ENSG00000232977.6|LINC00327|lncRNA|chr13:23466570:23467163:+	0	+
#Deleted in new
chr13	23466570	23467749	ENSG00000232977.6|LINC00327|lncRNA|chr13:23466570:23467749:+	0	+
#Deleted in new
chr13	23486234	23487464	ENSG00000232977.6|LINC00327|lncRNA|chr13:23486234:23487464:+	0	+
#Deleted in new
chr13	23502369	23502874	ENSG00000227893.1|LINC00352|lncRNA|chr13:23502369:23502874:+	0	+
#Deleted in new
chr1	32350604	32350663	ENSG00000233775.1|AL109945.1|lncRNA|chr1:32350604:32350663:-	0	-
#Deleted in new
chr1	32352711	32352802	ENSG00000162526.6|TSSK3|pc|chr1:32352711:32352802:+	0	+
#Deleted in new
chr1	32352728	32352802	ENSG00000162526.6|TSSK3|pc|chr1:32352728:32352802:+	0	+
#Deleted in new
chr13	23585455	23585545	ENSG00000127863.15|TNFRSF19|pc|chr13:23585455:23585545:+	0	+
#Deleted in new
chr13	23594226	23594411	ENSG00000127863.15|TNFRSF19|pc|chr13:23594226:23594411:+	0	+
#Deleted in new
chr1	32369229	32369338	ENSG00000160058.18|BSDC1|pc|chr1:32369229:32369338:-	0	-
#Deleted in new
chr13	23760532	23760573	ENSG00000027001.9|MIPEP|pc|chr13:23760532:23760573:-	0	-
#Deleted in new
chr13	23842269	23842569	ENSG00000027001.9|MIPEP|pc|chr13:23842269:23842569:-	0	-
#Deleted in new
chr13	23888888	23889011	ENSG00000205861.11|PCOTH|pc|chr13:23888888:23889011:+	0	+
#Deleted in new
chr13	24017666	24017701	ENSG00000182957.15|SPATA13|pc|chr13:24017666:24017701:+	0	+
#Deleted in new
chr13	24017666	24017701	ENSG00000228741.2|SPATA13|lncRNA|chr13:24017666:24017701:+	0	+
#Deleted in new
chr13	24017666	24017701	ENSG00000273167.1|AL359736.1|pc|chr13:24017666:24017701:+	0	+
#Deleted in new
chr13	24033512	24033769	ENSG00000228741.2|SPATA13|lncRNA|chr13:24033512:24033769:+	0	+
#Deleted in new
chr13	24033920	24035027	ENSG00000228741.2|SPATA13|lncRNA|chr13:24033920:24035027:+	0	+
#Partially deleted in new
chr13	24252748	24252956	ENSG00000227213.1|SPATA13-AS1|lncRNA|chr13:24252748:24252956:-	0	-
#Deleted in new
chr13	24253078	24253199	ENSG00000227213.1|SPATA13-AS1|lncRNA|chr13:24253078:24253199:-	0	-
#Deleted in new
chr13	24272688	24273137	ENSG00000182957.15|SPATA13|pc|chr13:24272688:24273137:+	0	+
#Deleted in new
chr13	24278613	24278769	ENSG00000182957.15|SPATA13|pc|chr13:24278613:24278769:+	0	+
#Deleted in new
chr13	24278613	24278821	ENSG00000182957.15|SPATA13|pc|chr13:24278613:24278821:+	0	+
#Deleted in new
chr13	24307165	24307228	ENSG00000240654.6|C1QTNF9|pc|chr13:24307165:24307228:+	0	+
#Deleted in new
chr13	24336638	24337121	ENSG00000261498.1|LINC00566|lncRNA|chr13:24336638:24337121:+	0	+
#Partially deleted in new
chr13	24434394	24435474	ENSG00000102699.5|PARP4|pc|chr13:24434394:24435474:-	0	-
#Deleted in new
chr13	24512705	24512810	ENSG00000102699.5|PARP4|pc|chr13:24512705:24512810:-	0	-
#Deleted in new
chr13	24567283	24567396	ENSG00000243008.2|AL359538.1|lncRNA|chr13:24567283:24567396:+	0	+
#Deleted in new
chr13	24586461	24586794	ENSG00000243008.2|AL359538.1|lncRNA|chr13:24586461:24586794:+	0	+
#Deleted in new
chr13	24824195	24824377	ENSG00000132972.18|RNF17|pc|chr13:24824195:24824377:+	0	+
#Partially deleted in new
chr13	24885605	24886079	ENSG00000151849.14|CENPJ|pc|chr13:24885605:24886079:-	0	-
#Deleted in new
chr13	24886233	24886385	ENSG00000151849.14|CENPJ|pc|chr13:24886233:24886385:-	0	-
#Deleted in new
chr13	24886234	24886385	ENSG00000151849.14|CENPJ|pc|chr13:24886234:24886385:-	0	-
#Partially deleted in new
chr13	25179776	25180079	ENSG00000234056.1|LINC00463|lncRNA|chr13:25179776:25180079:-	0	-
#Deleted in new
chr13	25210100	25210295	ENSG00000225105.2|LINC01076|lncRNA|chr13:25210100:25210295:-	0	-
#Deleted in new
chr13	25302926	25303008	ENSG00000139496.15|NUP58|pc|chr13:25302926:25303008:+	0	+
#Deleted in new
chr13	25303101	25303155	ENSG00000139496.15|NUP58|pc|chr13:25303101:25303155:+	0	+
#Deleted in new
chr13	25309959	25310015	ENSG00000139496.15|NUP58|pc|chr13:25309959:25310015:+	0	+
#Deleted in new
chr1	32536112	32536205	ENSG00000254553.1|AL033529.1|pc|chr1:32536112:32536205:+	0	+
#Deleted in new
chr1	32536484	32536564	ENSG00000254553.1|AL033529.1|pc|chr1:32536484:32536564:+	0	+
#Deleted in new
chr1	32553458	32553540	ENSG00000160062.14|ZBTB8A|pc|chr1:32553458:32553540:+	0	+
#Deleted in new
chr1	32553458	32553540	ENSG00000254553.1|AL033529.1|pc|chr1:32553458:32553540:+	0	+
#Deleted in new
chr13	25567132	25567356	ENSG00000132932.16|ATP8A2|pc|chr13:25567132:25567356:+	0	+
#Deleted in new
chr13	25591253	25591373	ENSG00000132932.16|ATP8A2|pc|chr13:25591253:25591373:+	0	+
#Deleted in new
chr13	25927110	25927283	ENSG00000132932.16|ATP8A2|pc|chr13:25927110:25927283:+	0	+
#Partially deleted in new
chr1	32600086	32605939	ENSG00000160062.14|ZBTB8A|pc|chr1:32600086:32605939:+	0	+
#Deleted in new
chr13	26053347	26053385	ENSG00000231983.1|LINC00415|lncRNA|chr13:26053347:26053385:-	0	-
#Deleted in new
chr13	26132114	26132451	ENSG00000127870.16|RNF6|pc|chr13:26132114:26132451:-	0	-
#Deleted in new
chr1	32632207	32632345	ENSG00000176261.15|ZBTB8OS|pc|chr1:32632207:32632345:-	0	-
#Deleted in new
chr1	32633261	32633354	ENSG00000176261.15|ZBTB8OS|pc|chr1:32633261:32633354:-	0	-
#Partially deleted in new
chr1	32634357	32634792	ENSG00000176261.15|ZBTB8OS|pc|chr1:32634357:32634792:-	0	-
#Partially deleted in new
chr13	26400072	26400550	ENSG00000132964.11|CDK8|pc|chr13:26400072:26400550:+	0	+
#Deleted in new
chr13	26606543	26606891	ENSG00000237001.6|WASF3-AS1|lncRNA|chr13:26606543:26606891:-	0	-
#Partially deleted in new
chr13	26620565	26620701	ENSG00000237001.6|WASF3-AS1|lncRNA|chr13:26620565:26620701:-	0	-
#Deleted in new
chr1	32662245	32662337	ENSG00000162521.18|RBBP4|pc|chr1:32662245:32662337:+	0	+
#Deleted in new
chr13	26622625	26622746	ENSG00000237001.6|WASF3-AS1|lncRNA|chr13:26622625:26622746:-	0	-
#Deleted in new
chr13	26626057	26626337	ENSG00000237001.6|WASF3-AS1|lncRNA|chr13:26626057:26626337:-	0	-
#Deleted in new
chr13	26639732	26639869	ENSG00000237001.6|WASF3-AS1|lncRNA|chr13:26639732:26639869:-	0	-
#Deleted in new
chr13	26640368	26641165	ENSG00000237001.6|WASF3-AS1|lncRNA|chr13:26640368:26641165:-	0	-
#Deleted in new
chr13	26641275	26641341	ENSG00000237001.6|WASF3-AS1|lncRNA|chr13:26641275:26641341:-	0	-
#Deleted in new
chr13	26641275	26641364	ENSG00000237001.6|WASF3-AS1|lncRNA|chr13:26641275:26641364:-	0	-
#Duplicated in new
chr1	32679639	32680040	ENSG00000162521.18|RBBP4|pc|chr1:32679639:32680040:+	0	+
#Duplicated in new
chr1	32679639	32680053	ENSG00000162521.18|RBBP4|pc|chr1:32679639:32680053:+	0	+
#Duplicated in new
chr1	32679639	32680204	ENSG00000162521.18|RBBP4|pc|chr1:32679639:32680204:+	0	+
#Deleted in new
chr13	26991155	26991262	ENSG00000283579.1|AL160035.1|lncRNA|chr13:26991155:26991262:-	0	-
#Deleted in new
chr13	26991907	26991996	ENSG00000283579.1|AL160035.1|lncRNA|chr13:26991907:26991996:-	0	-
#Partially deleted in new
chr13	27089437	27089966	ENSG00000152484.13|USP12|pc|chr13:27089437:27089966:-	0	-
#Deleted in new
chr13	27162854	27162923	ENSG00000232162.1|USP12-AS1|lncRNA|chr13:27162854:27162923:+	0	+
#Deleted in new
chr13	27178262	27178574	ENSG00000275294.4|LINC02340|lncRNA|chr13:27178262:27178574:-	0	-
#Deleted in new
chr13	27186505	27186658	ENSG00000275294.4|LINC02340|lncRNA|chr13:27186505:27186658:-	0	-
#Deleted in new
chr13	27190621	27190681	ENSG00000275294.4|LINC02340|lncRNA|chr13:27190621:27190681:-	0	-
#Deleted in new
chr13	27203086	27203205	ENSG00000275294.4|LINC02340|lncRNA|chr13:27203086:27203205:-	0	-
#Deleted in new
chr13	27207973	27208001	ENSG00000275294.4|LINC02340|lncRNA|chr13:27207973:27208001:-	0	-
#Deleted in new
chr13	27207973	27208050	ENSG00000275294.4|LINC02340|lncRNA|chr13:27207973:27208050:-	0	-
#Deleted in new
chr13	27220620	27220855	ENSG00000275294.4|LINC02340|lncRNA|chr13:27220620:27220855:-	0	-
#Partially deleted in new
chr13	27236697	27236811	ENSG00000234772.1|LINC00412|lncRNA|chr13:27236697:27236811:-	0	-
#Partially deleted in new
chr13	27425410	27426341	ENSG00000122034.14|GTF3A|pc|chr13:27425410:27426341:+	0	+
#Deleted in new
chr13	27429212	27429389	ENSG00000122034.14|GTF3A|pc|chr13:27429212:27429389:+	0	+
#Deleted in new
chr13	27441016	27441077	ENSG00000122033.14|MTIF3|pc|chr13:27441016:27441077:-	0	-
#Partially deleted in new
chr13	27441016	27441245	ENSG00000122033.14|MTIF3|pc|chr13:27441016:27441245:-	0	-
#Deleted in new
chr13	27445087	27445137	ENSG00000122033.14|MTIF3|pc|chr13:27445087:27445137:-	0	-
#Deleted in new
chr13	27445087	27445156	ENSG00000122033.14|MTIF3|pc|chr13:27445087:27445156:-	0	-
#Deleted in new
chr13	27449851	27449918	ENSG00000122033.14|MTIF3|pc|chr13:27449851:27449918:-	0	-
#Deleted in new
chr13	27449851	27450041	ENSG00000122033.14|MTIF3|pc|chr13:27449851:27450041:-	0	-
#Deleted in new
chr13	27450063	27450131	ENSG00000122033.14|MTIF3|pc|chr13:27450063:27450131:-	0	-
#Deleted in new
chr13	27450063	27450143	ENSG00000122033.14|MTIF3|pc|chr13:27450063:27450143:-	0	-
#Deleted in new
chr13	27450063	27450164	ENSG00000122033.14|MTIF3|pc|chr13:27450063:27450164:-	0	-
#Deleted in new
chr13	27450141	27450196	ENSG00000122033.14|MTIF3|pc|chr13:27450141:27450196:-	0	-
#Deleted in new
chr13	27450141	27450199	ENSG00000122033.14|MTIF3|pc|chr13:27450141:27450199:-	0	-
#Deleted in new
chr13	27646193	27646218	ENSG00000186184.16|POLR1D|pc|chr13:27646193:27646218:+	0	+
#Deleted in new
chr13	27650041	27650241	ENSG00000186184.16|POLR1D|pc|chr13:27650041:27650241:+	0	+
#Deleted in new
chr13	27650041	27651549	ENSG00000186184.16|POLR1D|pc|chr13:27650041:27651549:+	0	+
#Deleted in new
chr13	27650151	27651352	ENSG00000186184.16|POLR1D|pc|chr13:27650151:27651352:+	0	+
#Deleted in new
chr13	27660778	27660811	ENSG00000186184.16|POLR1D|pc|chr13:27660778:27660811:+	0	+
#Deleted in new
chr13	27660867	27660915	ENSG00000186184.16|POLR1D|pc|chr13:27660867:27660915:+	0	+
#Deleted in new
chr13	27665112	27665144	ENSG00000186184.16|POLR1D|pc|chr13:27665112:27665144:+	0	+
#Deleted in new
chr13	27667539	27667752	ENSG00000273552.1|AL136439.1|lncRNA|chr13:27667539:27667752:-	0	-
#Deleted in new
chr13	27678353	27678949	ENSG00000273552.1|AL136439.1|lncRNA|chr13:27678353:27678949:-	0	-
#Deleted in new
chr13	27680513	27680566	ENSG00000273552.1|AL136439.1|lncRNA|chr13:27680513:27680566:-	0	-
#Deleted in new
chr13	27738706	27738767	ENSG00000186184.16|POLR1D|pc|chr13:27738706:27738767:+	0	+
#Partially deleted in new
chr13	27739916	27744237	ENSG00000186184.16|POLR1D|pc|chr13:27739916:27744237:+	0	+
#Deleted in new
chr13	27834020	27834150	ENSG00000247381.3|PLUT|lncRNA|chr13:27834020:27834150:-	0	-
#Deleted in new
chr13	27848007	27848536	ENSG00000247381.3|PLUT|lncRNA|chr13:27848007:27848536:-	0	-
#Partially deleted in new
chr13	27953525	27955370	ENSG00000260704.1|LINC00543|lncRNA|chr13:27953525:27955370:+	0	+
#Partially deleted in new
chr1	32797762	32798214	ENSG00000134684.10|YARS|pc|chr1:32797762:32798214:-	0	-
#Deleted in new
chr13	28009305	28009490	ENSG00000122025.14|FLT3|pc|chr13:28009305:28009490:-	0	-
#Partially deleted in new
chr1	32810910	32811647	ENSG00000134684.10|YARS|pc|chr1:32810910:32811647:-	0	-
#Deleted in new
chr1	32820546	32820599	ENSG00000116497.17|S100PBP|pc|chr1:32820546:32820599:+	0	+
#Deleted in new
chr13	28328290	28328415	ENSG00000102755.11|FLT1|pc|chr13:28328290:28328415:-	0	-
#Deleted in new
chr1	32834033	32834061	ENSG00000116497.17|S100PBP|pc|chr1:32834033:32834061:+	0	+
#Deleted in new
chr13	28346216	28346289	ENSG00000102755.11|FLT1|pc|chr13:28346216:28346289:-	0	-
#Deleted in new
chr1	32834864	32837178	ENSG00000116497.17|S100PBP|pc|chr1:32834864:32837178:+	0	+
#Deleted in new
chr13	28368095	28368663	ENSG00000102755.11|FLT1|pc|chr13:28368095:28368663:-	0	-
#Deleted in new
chr1	32842782	32843187	ENSG00000116497.17|S100PBP|pc|chr1:32842782:32843187:+	0	+
#Deleted in new
chr1	32846801	32846875	ENSG00000116497.17|S100PBP|pc|chr1:32846801:32846875:+	0	+
#Deleted in new
chr1	32847314	32847722	ENSG00000116497.17|S100PBP|pc|chr1:32847314:32847722:+	0	+
#Deleted in new
chr1	32847671	32847722	ENSG00000116497.17|S100PBP|pc|chr1:32847671:32847722:+	0	+
#Deleted in new
chr13	29239378	29239958	ENSG00000236758.5|MTUS2-AS2|lncRNA|chr13:29239378:29239958:-	0	-
#Deleted in new
chr13	29239622	29239958	ENSG00000236758.5|MTUS2-AS2|lncRNA|chr13:29239622:29239958:-	0	-
#Deleted in new
chr13	29239786	29240127	ENSG00000236758.5|MTUS2-AS2|lncRNA|chr13:29239786:29240127:-	0	-
#Deleted in new
chr13	29242528	29242698	ENSG00000236758.5|MTUS2-AS2|lncRNA|chr13:29242528:29242698:-	0	-
#Deleted in new
chr13	29250414	29250554	ENSG00000236758.5|MTUS2-AS2|lncRNA|chr13:29250414:29250554:-	0	-
#Deleted in new
chr13	29476514	29476939	ENSG00000179141.9|MTUS2-AS1|lncRNA|chr13:29476514:29476939:-	0	-
#Deleted in new
chr13	29482113	29482377	ENSG00000179141.9|MTUS2-AS1|lncRNA|chr13:29482113:29482377:-	0	-
#Partially deleted in new
chr13	29483916	29484227	ENSG00000179141.9|MTUS2-AS1|lncRNA|chr13:29483916:29484227:-	0	-
#Deleted in new
chr13	29487499	29487517	ENSG00000179141.9|MTUS2-AS1|lncRNA|chr13:29487499:29487517:-	0	-
#Deleted in new
chr13	29496346	29496450	ENSG00000132938.19|MTUS2|pc|chr13:29496346:29496450:+	0	+
#Deleted in new
chr13	29496415	29496450	ENSG00000132938.19|MTUS2|pc|chr13:29496415:29496450:+	0	+
#Deleted in new
chr13	29553760	29553860	ENSG00000139514.12|SLC7A1|pc|chr13:29553760:29553860:-	0	-
#Deleted in new
chr1	32973552	32974463	ENSG00000278966.2|AL031602.1|lncRNA|chr1:32973552:32974463:+	0	+
#Deleted in new
chr1	32973666	32974041	ENSG00000278966.2|AL031602.1|lncRNA|chr1:32973666:32974041:+	0	+
#Deleted in new
chr13	29935904	29936224	ENSG00000122043.10|LINC00544|lncRNA|chr13:29935904:29936224:+	0	+
#Deleted in new
chr13	29936515	29936701	ENSG00000122043.10|LINC00544|lncRNA|chr13:29936515:29936701:+	0	+
#Deleted in new
chr13	29937201	29937281	ENSG00000122043.10|LINC00544|lncRNA|chr13:29937201:29937281:+	0	+
#Deleted in new
chr13	29937905	29938009	ENSG00000122043.10|LINC00544|lncRNA|chr13:29937905:29938009:+	0	+
#Deleted in new
chr13	29942096	29942567	ENSG00000122043.10|LINC00544|lncRNA|chr13:29942096:29942567:+	0	+
#Deleted in new
chr13	29947602	29947771	ENSG00000122043.10|LINC00544|lncRNA|chr13:29947602:29947771:+	0	+
#Partially deleted in new
chr13	30103177	30105695	ENSG00000224511.1|LINC00365|lncRNA|chr13:30103177:30105695:-	0	-
#Deleted in new
chr13	30151885	30152149	ENSG00000232117.1|LINC00384|lncRNA|chr13:30151885:30152149:-	0	-
#Partially deleted in new
chr13	30153033	30159621	ENSG00000232117.1|LINC00384|lncRNA|chr13:30153033:30159621:-	0	-
#Deleted in new
chr13	30154288	30154586	ENSG00000232643.1|LINC00385|lncRNA|chr13:30154288:30154586:+	0	+
#Deleted in new
chr1	33019682	33020161	ENSG00000004455.16|AK2|pc|chr1:33019682:33020161:-	0	-
#Deleted in new
chr1	33031034	33032469	ENSG00000236065.2|AL020995.1|lncRNA|chr1:33031034:33032469:+	0	+
#Deleted in new
chr1	33031543	33031661	ENSG00000004455.16|AK2|pc|chr1:33031543:33031661:-	0	-
#Deleted in new
chr1	33031625	33031661	ENSG00000004455.16|AK2|pc|chr1:33031625:33031661:-	0	-
#Deleted in new
chr13	30342459	30342886	ENSG00000238121.5|LINC00426|lncRNA|chr13:30342459:30342886:-	0	-
#Deleted in new
chr13	30344671	30347167	ENSG00000279149.1|AL356750.1|lncRNA|chr13:30344671:30347167:+	0	+
#Deleted in new
chr13	30357264	30357392	ENSG00000238121.5|LINC00426|lncRNA|chr13:30357264:30357392:-	0	-
#Deleted in new
chr13	30357741	30357889	ENSG00000238121.5|LINC00426|lncRNA|chr13:30357741:30357889:-	0	-
#Deleted in new
chr13	30357744	30357889	ENSG00000238121.5|LINC00426|lncRNA|chr13:30357744:30357889:-	0	-
#Deleted in new
chr13	30358253	30358376	ENSG00000238121.5|LINC00426|lncRNA|chr13:30358253:30358376:-	0	-
#Deleted in new
chr13	30367600	30367667	ENSG00000238121.5|LINC00426|lncRNA|chr13:30367600:30367667:-	0	-
#Deleted in new
chr13	30367600	30367717	ENSG00000238121.5|LINC00426|lncRNA|chr13:30367600:30367717:-	0	-
#Deleted in new
chr13	30370471	30370525	ENSG00000238121.5|LINC00426|lncRNA|chr13:30370471:30370525:-	0	-
#Deleted in new
chr13	30372821	30373032	ENSG00000238121.5|LINC00426|lncRNA|chr13:30372821:30373032:-	0	-
#Deleted in new
chr13	30373782	30373899	ENSG00000238121.5|LINC00426|lncRNA|chr13:30373782:30373899:-	0	-
#Deleted in new
chr13	30373782	30373914	ENSG00000238121.5|LINC00426|lncRNA|chr13:30373782:30373914:-	0	-
#Deleted in new
chr13	30374002	30374093	ENSG00000238121.5|LINC00426|lncRNA|chr13:30374002:30374093:-	0	-
#Deleted in new
chr13	30375466	30375776	ENSG00000238121.5|LINC00426|lncRNA|chr13:30375466:30375776:-	0	-
#Deleted in new
chr13	30376826	30376964	ENSG00000238121.5|LINC00426|lncRNA|chr13:30376826:30376964:-	0	-
#Deleted in new
chr13	30376826	30377145	ENSG00000238121.5|LINC00426|lncRNA|chr13:30376826:30377145:-	0	-
#Partially deleted in new
chr13	30419518	30419945	ENSG00000225039.1|LINC01058|lncRNA|chr13:30419518:30419945:-	0	-
#Deleted in new
chr13	30422216	30422237	ENSG00000225039.1|LINC01058|lncRNA|chr13:30422216:30422237:-	0	-
#Deleted in new
chr13	30424807	30424901	ENSG00000236444.4|UBE2L5P|pc|chr13:30424807:30424901:+	0	+
#Deleted in new
chr13	30426724	30426778	ENSG00000236444.4|UBE2L5P|pc|chr13:30426724:30426778:+	0	+
#Deleted in new
chr13	30742335	30742545	ENSG00000132965.9|ALOX5AP|pc|chr13:30742335:30742545:+	0	+
#Partially deleted in new
chr13	30883093	30883395	ENSG00000236094.1|LINC00545|lncRNA|chr13:30883093:30883395:+	0	+
#Deleted in new
chr13	30883253	30883335	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30883253:30883335:-	0	-
#Deleted in new
chr13	30883937	30884060	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30883937:30884060:-	0	-
#Deleted in new
chr13	30899913	30899986	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30899913:30899986:-	0	-
#Deleted in new
chr13	30904756	30905170	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30904756:30905170:-	0	-
#Partially deleted in new
chr13	30908775	30909109	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30908775:30909109:-	0	-
#Deleted in new
chr13	30916045	30916357	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30916045:30916357:-	0	-
#Deleted in new
chr13	30916045	30916409	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30916045:30916409:-	0	-
#Partially deleted in new
chr13	30921973	30922860	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30921973:30922860:-	0	-
#Partially deleted in new
chr13	30931245	30931283	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30931245:30931283:-	0	-
#Partially deleted in new
chr13	30931245	30931358	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30931245:30931358:-	0	-
#Partially deleted in new
chr13	30931245	30931936	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30931245:30931936:-	0	-
#Partially deleted in new
chr13	30931245	30932606	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30931245:30932606:-	0	-
#Deleted in new
chr13	30931628	30931936	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30931628:30931936:-	0	-
#Deleted in new
chr13	30931713	30931936	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30931713:30931936:-	0	-
#Partially deleted in new
chr13	30931786	30932474	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30931786:30932474:-	0	-
#Partially deleted in new
chr13	30932108	30932253	ENSG00000224743.6|TEX26-AS1|lncRNA|chr13:30932108:30932253:-	0	-
#Deleted in new
chr13	30973288	30973481	ENSG00000238185.1|AL353680.1|lncRNA|chr13:30973288:30973481:-	0	-
#Deleted in new
chr13	30977559	30977623	ENSG00000238185.1|AL353680.1|lncRNA|chr13:30977559:30977623:-	0	-
#Deleted in new
chr13	30996053	30996138	ENSG00000230403.1|LINC01066|lncRNA|chr13:30996053:30996138:-	0	-
#Deleted in new
chr1	33101832	33101893	ENSG00000142920.16|AZIN2|pc|chr1:33101832:33101893:+	0	+
#Deleted in new
chr13	31283068	31283306	ENSG00000187676.7|B3GLCT|pc|chr13:31283068:31283306:+	0	+
#Deleted in new
chr13	31419988	31420077	ENSG00000278305.1|AL161616.2|lncRNA|chr13:31419988:31420077:+	0	+
#Deleted in new
chr13	31437409	31437604	ENSG00000278305.1|AL161616.2|lncRNA|chr13:31437409:31437604:+	0	+
#Deleted in new
chr1	33194787	33196238	ENSG00000284721.1|AL662907.3|lncRNA|chr1:33194787:33196238:+	0	+
#Partially deleted in new
chr13	31960324	31961946	ENSG00000279314.1|AC002525.1|lncRNA|chr13:31960324:31961946:-	0	-
#Deleted in new
chr1	33196135	33196152	ENSG00000284721.1|AL662907.3|lncRNA|chr1:33196135:33196152:+	0	+
#Deleted in new
chr13	31985684	31985734	ENSG00000235822.1|LINC01073|lncRNA|chr13:31985684:31985734:+	0	+
#Deleted in new
chr13	31990898	31990997	ENSG00000235822.1|LINC01073|lncRNA|chr13:31990898:31990997:+	0	+
#Deleted in new
chr1	33199790	33199805	ENSG00000284721.1|AL662907.3|lncRNA|chr1:33199790:33199805:+	0	+
#Deleted in new
chr1	33199872	33200353	ENSG00000284721.1|AL662907.3|lncRNA|chr1:33199872:33200353:+	0	+
#Deleted in new
chr13	32298153	32298332	ENSG00000073910.20|FRY|pc|chr13:32298153:32298332:+	0	+
#Deleted in new
chr13	32298454	32298712	ENSG00000073910.20|FRY|pc|chr13:32298454:32298712:+	0	+
#Deleted in new
chr13	32315314	32315344	ENSG00000189167.11|ZAR1L|pc|chr13:32315314:32315344:-	0	-
#Partially deleted in new
chr13	32315473	32315667	ENSG00000139618.14|BRCA2|pc|chr13:32315473:32315667:+	0	+
#Partially deleted in new
chr13	32315479	32315667	ENSG00000139618.14|BRCA2|pc|chr13:32315479:32315667:+	0	+
#Deleted in new
chr13	32315504	32315667	ENSG00000139618.14|BRCA2|pc|chr13:32315504:32315667:+	0	+
#Deleted in new
chr13	32326100	32326150	ENSG00000139618.14|BRCA2|pc|chr13:32326100:32326150:+	0	+
#Deleted in new
chr13	32375342	32375406	ENSG00000139618.14|BRCA2|pc|chr13:32375342:32375406:+	0	+
#Deleted in new
chr13	32395990	32396116	ENSG00000139618.14|BRCA2|pc|chr13:32395990:32396116:+	0	+
#Deleted in new
chr13	32399608	32399668	ENSG00000139618.14|BRCA2|pc|chr13:32399608:32399668:+	0	+
#Deleted in new
chr13	32432416	32432972	ENSG00000244754.8|N4BP2L2|pc|chr13:32432416:32432972:-	0	-
#Deleted in new
chr13	32432488	32432972	ENSG00000244754.8|N4BP2L2|pc|chr13:32432488:32432972:-	0	-
#Deleted in new
chr13	32432786	32432972	ENSG00000244754.8|N4BP2L2|pc|chr13:32432786:32432972:-	0	-
#Deleted in new
chr13	32432788	32432954	ENSG00000270008.1|AL137247.1|lncRNA|chr13:32432788:32432954:-	0	-
#Deleted in new
chr13	32432830	32432972	ENSG00000244754.8|N4BP2L2|pc|chr13:32432830:32432972:-	0	-
#Deleted in new
chr13	32432890	32432972	ENSG00000244754.8|N4BP2L2|pc|chr13:32432890:32432972:-	0	-
#Deleted in new
chr13	32478227	32478275	ENSG00000244754.8|N4BP2L2|pc|chr13:32478227:32478275:-	0	-
#Deleted in new
chr13	32480589	32480637	ENSG00000244754.8|N4BP2L2|pc|chr13:32480589:32480637:-	0	-
#Deleted in new
chr13	32480589	32480638	ENSG00000244754.8|N4BP2L2|pc|chr13:32480589:32480638:-	0	-
#Deleted in new
chr13	32490091	32490140	ENSG00000244754.8|N4BP2L2|pc|chr13:32490091:32490140:-	0	-
#Partially deleted in new
chr13	32504505	32509395	ENSG00000281026.1|N4BP2L2-IT2|lncRNA|chr13:32504505:32509395:-	0	-
#Partially deleted in new
chr13	32521372	32525579	ENSG00000244754.8|N4BP2L2|pc|chr13:32521372:32525579:-	0	-
#Deleted in new
chr13	32782873	32788178	ENSG00000277151.1|AL138820.1|lncRNA|chr13:32782873:32788178:+	0	+
#Deleted in new
chr13	32877430	32877497	ENSG00000226968.1|LINC00423|lncRNA|chr13:32877430:32877497:-	0	-
#Deleted in new
chr13	32906893	32907017	ENSG00000226968.1|LINC00423|lncRNA|chr13:32906893:32907017:-	0	-
#Deleted in new
chr13	32910636	32910720	ENSG00000226968.1|LINC00423|lncRNA|chr13:32910636:32910720:-	0	-
#Deleted in new
chr13	32911022	32911650	ENSG00000226968.1|LINC00423|lncRNA|chr13:32911022:32911650:-	0	-
#Deleted in new
chr1	33313323	33313717	ENSG00000225313.5|AL513327.1|lncRNA|chr1:33313323:33313717:+	0	+
#Deleted in new
chr1	33313515	33313717	ENSG00000225313.5|AL513327.1|lncRNA|chr1:33313515:33313717:+	0	+
#Deleted in new
chr13	33155435	33155611	ENSG00000133121.20|STARD13|pc|chr13:33155435:33155611:-	0	-
#Partially deleted in new
chr13	33275686	33275847	ENSG00000236581.8|STARD13-AS|lncRNA|chr13:33275686:33275847:+	0	+
#Partially deleted in new
chr13	33275686	33275850	ENSG00000236581.8|STARD13-AS|lncRNA|chr13:33275686:33275850:+	0	+
#Partially deleted in new
chr13	33275711	33275850	ENSG00000236581.8|STARD13-AS|lncRNA|chr13:33275711:33275850:+	0	+
#Partially deleted in new
chr13	33278495	33278669	ENSG00000236581.8|STARD13-AS|lncRNA|chr13:33278495:33278669:+	0	+
#Deleted in new
chr13	33279460	33279500	ENSG00000236581.8|STARD13-AS|lncRNA|chr13:33279460:33279500:+	0	+
#Deleted in new
chr13	33279460	33279570	ENSG00000236581.8|STARD13-AS|lncRNA|chr13:33279460:33279570:+	0	+
#Deleted in new
chr13	33279460	33279620	ENSG00000236581.8|STARD13-AS|lncRNA|chr13:33279460:33279620:+	0	+
#Deleted in new
chr13	33279460	33279656	ENSG00000236581.8|STARD13-AS|lncRNA|chr13:33279460:33279656:+	0	+
#Deleted in new
chr13	33279472	33279656	ENSG00000236581.8|STARD13-AS|lncRNA|chr13:33279472:33279656:+	0	+
#Deleted in new
chr13	33279532	33279570	ENSG00000236581.8|STARD13-AS|lncRNA|chr13:33279532:33279570:+	0	+
#Deleted in new
chr13	33279532	33279656	ENSG00000236581.8|STARD13-AS|lncRNA|chr13:33279532:33279656:+	0	+
#Deleted in new
chr13	33333678	33334049	ENSG00000227911.3|LINC02344|lncRNA|chr13:33333678:33334049:-	0	-
#Deleted in new
chr13	33336215	33336716	ENSG00000277386.1|AL138999.1|lncRNA|chr13:33336215:33336716:-	0	-
#Deleted in new
chr13	33355205	33355666	ENSG00000230490.2|AL139383.1|lncRNA|chr13:33355205:33355666:-	0	-
#Deleted in new
chr13	33359464	33359587	ENSG00000230490.2|AL139383.1|lncRNA|chr13:33359464:33359587:-	0	-
#Deleted in new
chr13	33383631	33383679	ENSG00000230490.2|AL139383.1|lncRNA|chr13:33383631:33383679:-	0	-
#Partially deleted in new
chr13	33511329	33511407	ENSG00000230490.2|AL139383.1|lncRNA|chr13:33511329:33511407:-	0	-
#Deleted in new
chr13	33656811	33656942	ENSG00000230490.2|AL139383.1|lncRNA|chr13:33656811:33656942:-	0	-
#Deleted in new
chr13	33657435	33657471	ENSG00000232986.1|AL139081.1|lncRNA|chr13:33657435:33657471:+	0	+
#Deleted in new
chr13	33658194	33658373	ENSG00000232986.1|AL139081.1|lncRNA|chr13:33658194:33658373:+	0	+
#Deleted in new
chr13	33659761	33659928	ENSG00000232986.1|AL139081.1|lncRNA|chr13:33659761:33659928:+	0	+
#Deleted in new
chr13	33661276	33661343	ENSG00000230490.2|AL139383.1|lncRNA|chr13:33661276:33661343:-	0	-
#Partially deleted in new
chr13	33836103	33837496	ENSG00000133119.12|RFC3|pc|chr13:33836103:33837496:+	0	+
#Deleted in new
chr13	33846189	33850825	ENSG00000276672.1|AL161891.1|lncRNA|chr13:33846189:33850825:+	0	+
#Deleted in new
chr13	34613911	34614170	ENSG00000271850.1|LINC02343|lncRNA|chr13:34613911:34614170:+	0	+
#Partially deleted in new
chr1	33598688	33600241	ENSG00000121904.17|CSMD2|pc|chr1:33598688:33600241:-	0	-
#Deleted in new
chr1	33605862	33605988	ENSG00000121904.17|CSMD2|pc|chr1:33605862:33605988:-	0	-
#Deleted in new
chr13	36181991	36183197	ENSG00000120669.15|SOHLH2|pc|chr13:36181991:36183197:-	0	-
#Deleted in new
chr13	36214478	36214588	ENSG00000120669.15|SOHLH2|pc|chr13:36214478:36214588:-	0	-
#Deleted in new
chr13	36214478	36214615	ENSG00000120669.15|SOHLH2|pc|chr13:36214478:36214615:-	0	-
#Deleted in new
chr13	36222007	36227381	ENSG00000242715.7|CCDC169|pc|chr13:36222007:36227381:-	0	-
#Deleted in new
chr13	36227044	36227381	ENSG00000242715.7|CCDC169|pc|chr13:36227044:36227381:-	0	-
#Deleted in new
chr13	36227119	36227381	ENSG00000242715.7|CCDC169|pc|chr13:36227119:36227381:-	0	-
#Deleted in new
chr13	36227347	36227381	ENSG00000250709.1|CCDC169-SOHLH2|pc|chr13:36227347:36227381:-	0	-
#Deleted in new
chr13	36280056	36281260	ENSG00000242715.7|CCDC169|pc|chr13:36280056:36281260:-	0	-
#Partially deleted in new
chr13	36313967	36314082	ENSG00000133104.12|SPART|pc|chr13:36313967:36314082:-	0	-
#Deleted in new
chr13	36336286	36336358	ENSG00000133104.12|SPART|pc|chr13:36336286:36336358:-	0	-
#Deleted in new
chr13	36346224	36346283	ENSG00000133104.12|SPART|pc|chr13:36346224:36346283:-	0	-
#Deleted in new
chr13	36346313	36346493	ENSG00000133104.12|SPART|pc|chr13:36346313:36346493:-	0	-
#Deleted in new
chr13	36346430	36346507	ENSG00000120664.10|SPG20-AS1|lncRNA|chr13:36346430:36346507:+	0	+
#Deleted in new
chr13	36346431	36346507	ENSG00000120664.10|SPG20-AS1|lncRNA|chr13:36346431:36346507:+	0	+
#Deleted in new
chr13	36346581	36346777	ENSG00000133104.12|SPART|pc|chr13:36346581:36346777:-	0	-
#Deleted in new
chr13	36346581	36346797	ENSG00000133104.12|SPART|pc|chr13:36346581:36346797:-	0	-
#Deleted in new
chr13	36360653	36360740	ENSG00000120664.10|SPG20-AS1|lncRNA|chr13:36360653:36360740:+	0	+
#Deleted in new
chr13	36365499	36365604	ENSG00000120664.10|SPG20-AS1|lncRNA|chr13:36365499:36365604:+	0	+
#Deleted in new
chr13	36368197	36368343	ENSG00000120664.10|SPG20-AS1|lncRNA|chr13:36368197:36368343:+	0	+
#Deleted in new
chr13	36368197	36368410	ENSG00000120664.10|SPG20-AS1|lncRNA|chr13:36368197:36368410:+	0	+
#Deleted in new
chr13	36849365	36849762	ENSG00000236711.2|SMAD9-IT1|lncRNA|chr13:36849365:36849762:-	0	-
#Deleted in new
chr13	36849939	36850046	ENSG00000236711.2|SMAD9-IT1|lncRNA|chr13:36849939:36850046:-	0	-
#Deleted in new
chr13	36867272	36867383	ENSG00000120693.13|SMAD9|pc|chr13:36867272:36867383:-	0	-
#Deleted in new
chr13	36999931	37000261	ENSG00000120697.8|ALG5|pc|chr13:36999931:37000261:-	0	-
#Partially deleted in new
chr13	37000540	37000822	ENSG00000120699.12|EXOSC8|pc|chr13:37000540:37000822:+	0	+
#Deleted in new
chr13	37001473	37001801	ENSG00000120699.12|EXOSC8|pc|chr13:37001473:37001801:+	0	+
#Deleted in new
chr13	37001748	37001801	ENSG00000120699.12|EXOSC8|pc|chr13:37001748:37001801:+	0	+
#Partially deleted in new
chr13	37002933	37004561	ENSG00000120699.12|EXOSC8|pc|chr13:37002933:37004561:+	0	+
#Deleted in new
chr13	37003494	37003517	ENSG00000120699.12|EXOSC8|pc|chr13:37003494:37003517:+	0	+
#Partially deleted in new
chr13	37012191	37013906	ENSG00000102710.19|SUPT20H|pc|chr13:37012191:37013906:-	0	-
#Partially deleted in new
chr13	37024339	37024947	ENSG00000102710.19|SUPT20H|pc|chr13:37024339:37024947:-	0	-
#Partially deleted in new
chr13	37038034	37040458	ENSG00000102710.19|SUPT20H|pc|chr13:37038034:37040458:-	0	-
#Deleted in new
chr13	37056877	37057133	ENSG00000102710.19|SUPT20H|pc|chr13:37056877:37057133:-	0	-
#Deleted in new
chr13	37142966	37146718	ENSG00000279511.1|AL356274.2|lncRNA|chr13:37142966:37146718:-	0	-
#Deleted in new
chr13	37484469	37484545	ENSG00000230390.1|LINC01048|lncRNA|chr13:37484469:37484545:-	0	-
#Deleted in new
chr13	37484704	37484769	ENSG00000230390.1|LINC01048|lncRNA|chr13:37484704:37484769:-	0	-
#Deleted in new
chr13	37547833	37547904	ENSG00000275226.1|LINC00547|lncRNA|chr13:37547833:37547904:+	0	+
#Deleted in new
chr13	37548095	37548240	ENSG00000275226.1|LINC00547|lncRNA|chr13:37548095:37548240:+	0	+
#Partially deleted in new
chr13	37548500	37551536	ENSG00000275226.1|LINC00547|lncRNA|chr13:37548500:37551536:+	0	+
#Deleted in new
chr13	37934564	37935037	ENSG00000274317.1|LINC02334|lncRNA|chr13:37934564:37935037:+	0	+
#Deleted in new
chr13	38013403	38013501	ENSG00000274317.1|LINC02334|lncRNA|chr13:38013403:38013501:+	0	+
#Deleted in new
chr13	38043950	38048169	ENSG00000274317.1|LINC02334|lncRNA|chr13:38043950:38048169:+	0	+
#Deleted in new
chr13	38050816	38050881	ENSG00000223685.5|LINC00571|lncRNA|chr13:38050816:38050881:-	0	-
#Deleted in new
chr13	38053697	38054169	ENSG00000223685.5|LINC00571|lncRNA|chr13:38053697:38054169:-	0	-
#Deleted in new
chr13	38053919	38054169	ENSG00000223685.5|LINC00571|lncRNA|chr13:38053919:38054169:-	0	-
#Deleted in new
chr13	38059518	38059708	ENSG00000223685.5|LINC00571|lncRNA|chr13:38059518:38059708:-	0	-
#Deleted in new
chr13	38061395	38061448	ENSG00000223685.5|LINC00571|lncRNA|chr13:38061395:38061448:-	0	-
#Deleted in new
chr13	38061395	38061453	ENSG00000223685.5|LINC00571|lncRNA|chr13:38061395:38061453:-	0	-
#Deleted in new
chr13	38062148	38062234	ENSG00000223685.5|LINC00571|lncRNA|chr13:38062148:38062234:-	0	-
#Deleted in new
chr13	38089572	38089660	ENSG00000223685.5|LINC00571|lncRNA|chr13:38089572:38089660:-	0	-
#Deleted in new
chr13	38093425	38093548	ENSG00000223685.5|LINC00571|lncRNA|chr13:38093425:38093548:-	0	-
#Deleted in new
chr13	38143131	38143232	ENSG00000223685.5|LINC00571|lncRNA|chr13:38143131:38143232:-	0	-
#Deleted in new
chr13	38372855	38373935	ENSG00000279025.1|AL356863.1|lncRNA|chr13:38372855:38373935:+	0	+
#Deleted in new
chr13	38533342	38534020	ENSG00000236354.1|LINC00437|lncRNA|chr13:38533342:38534020:-	0	-
#Deleted in new
chr13	38578728	38578994	ENSG00000229437.1|LINC00366|lncRNA|chr13:38578728:38578994:+	0	+
#Deleted in new
chr1	33862472	33862525	ENSG00000176256.10|HMGB4|pc|chr1:33862472:33862525:+	0	+
#Deleted in new
chr1	33868952	33869049	ENSG00000231163.5|CSMD2-AS1|lncRNA|chr1:33868952:33869049:+	0	+
#Deleted in new
chr13	38827410	38827570	ENSG00000225350.1|FREM2-AS1|lncRNA|chr13:38827410:38827570:-	0	-
#Deleted in new
chr13	38980051	38980135	ENSG00000133115.11|STOML3|pc|chr13:38980051:38980135:-	0	-
#Deleted in new
chr13	39053071	39053328	ENSG00000273507.4|AL354809.1|lncRNA|chr13:39053071:39053328:+	0	+
#Deleted in new
chr13	39085126	39085254	ENSG00000273507.4|AL354809.1|lncRNA|chr13:39085126:39085254:+	0	+
#Deleted in new
chr13	39191602	39191702	ENSG00000273507.4|AL354809.1|lncRNA|chr13:39191602:39191702:+	0	+
#Deleted in new
chr13	39221644	39221927	ENSG00000273507.4|AL354809.1|lncRNA|chr13:39221644:39221927:+	0	+
#Deleted in new
chr13	39656116	39656149	ENSG00000133103.16|COG6|pc|chr13:39656116:39656149:+	0	+
#Deleted in new
chr13	39656116	39656275	ENSG00000133103.16|COG6|pc|chr13:39656116:39656275:+	0	+
#Deleted in new
chr13	39656825	39656890	ENSG00000133103.16|COG6|pc|chr13:39656825:39656890:+	0	+
#Deleted in new
chr13	39678091	39678144	ENSG00000133103.16|COG6|pc|chr13:39678091:39678144:+	0	+
#Partially deleted in new
chr13	39788334	39791665	ENSG00000133103.16|COG6|pc|chr13:39788334:39791665:+	0	+
#Deleted in new
chr13	40095418	40095517	ENSG00000215483.10|LINC00598|lncRNA|chr13:40095418:40095517:-	0	-
#Deleted in new
chr13	40119462	40119525	ENSG00000215483.10|LINC00598|lncRNA|chr13:40119462:40119525:-	0	-
#Deleted in new
chr13	40161581	40161697	ENSG00000215483.10|LINC00598|lncRNA|chr13:40161581:40161697:-	0	-
#Deleted in new
chr13	40186145	40186253	ENSG00000230710.1|LINC00332|lncRNA|chr13:40186145:40186253:+	0	+
#Partially deleted in new
chr13	40198073	40199209	ENSG00000215483.10|LINC00598|lncRNA|chr13:40198073:40199209:-	0	-
#Deleted in new
chr13	40217577	40217750	ENSG00000215483.10|LINC00598|lncRNA|chr13:40217577:40217750:-	0	-
#Deleted in new
chr13	40296111	40296414	ENSG00000215483.10|LINC00598|lncRNA|chr13:40296111:40296414:-	0	-
#Deleted in new
chr13	40297100	40297249	ENSG00000215483.10|LINC00598|lncRNA|chr13:40297100:40297249:-	0	-
#Deleted in new
chr13	40306564	40306759	ENSG00000215483.10|LINC00598|lncRNA|chr13:40306564:40306759:-	0	-
#Deleted in new
chr13	40325618	40325830	ENSG00000215483.10|LINC00598|lncRNA|chr13:40325618:40325830:-	0	-
#Deleted in new
chr13	40403598	40403766	ENSG00000215483.10|LINC00598|lncRNA|chr13:40403598:40403766:-	0	-
#Deleted in new
chr13	40439671	40439787	ENSG00000215483.10|LINC00598|lncRNA|chr13:40439671:40439787:-	0	-
#Deleted in new
chr13	40452656	40452711	ENSG00000215483.10|LINC00598|lncRNA|chr13:40452656:40452711:-	0	-
#Deleted in new
chr13	40458902	40459016	ENSG00000215483.10|LINC00598|lncRNA|chr13:40458902:40459016:-	0	-
#Deleted in new
chr13	40473993	40474095	ENSG00000150907.7|FOXO1|pc|chr13:40473993:40474095:-	0	-
#Deleted in new
chr13	40473993	40474095	ENSG00000215483.10|LINC00598|lncRNA|chr13:40473993:40474095:-	0	-
#Partially deleted in new
chr13	40480908	40481006	ENSG00000215483.10|LINC00598|lncRNA|chr13:40480908:40481006:-	0	-
#Deleted in new
chr13	40562688	40562764	ENSG00000150907.7|FOXO1|pc|chr13:40562688:40562764:-	0	-
#Deleted in new
chr13	40752272	40752407	ENSG00000102738.7|MRPS31|pc|chr13:40752272:40752407:-	0	-
#Deleted in new
chr13	40951583	40951701	ENSG00000120690.15|ELF1|pc|chr13:40951583:40951701:-	0	-
#Deleted in new
chr13	41146426	41146507	ENSG00000278390.4|AL354696.2|lncRNA|chr13:41146426:41146507:+	0	+
#Deleted in new
chr13	41162262	41162403	ENSG00000278390.4|AL354696.2|lncRNA|chr13:41162262:41162403:+	0	+
#Deleted in new
chr13	41175372	41175659	ENSG00000278390.4|AL354696.2|lncRNA|chr13:41175372:41175659:+	0	+
#Deleted in new
chr13	41187230	41187568	ENSG00000278390.4|AL354696.2|lncRNA|chr13:41187230:41187568:+	0	+
#Partially deleted in new
chr13	41220536	41220643	ENSG00000120662.15|MTRF1|pc|chr13:41220536:41220643:-	0	-
#Deleted in new
chr13	41229179	41229676	ENSG00000277662.1|AL354696.1|lncRNA|chr13:41229179:41229676:-	0	-
#Deleted in new
chr13	41235115	41236686	ENSG00000278390.4|AL354696.2|lncRNA|chr13:41235115:41236686:+	0	+
#Partially deleted in new
chr13	41252281	41252752	ENSG00000120662.15|MTRF1|pc|chr13:41252281:41252752:-	0	-
#Partially deleted in new
chr13	41252283	41252752	ENSG00000120662.15|MTRF1|pc|chr13:41252283:41252752:-	0	-
#Deleted in new
chr13	41257672	41257796	ENSG00000120662.15|MTRF1|pc|chr13:41257672:41257796:-	0	-
#Deleted in new
chr13	41257672	41257797	ENSG00000120662.15|MTRF1|pc|chr13:41257672:41257797:-	0	-
#Deleted in new
chr13	41257755	41257796	ENSG00000120662.15|MTRF1|pc|chr13:41257755:41257796:-	0	-
#Deleted in new
chr13	41262047	41262331	ENSG00000120662.15|MTRF1|pc|chr13:41262047:41262331:-	0	-
#Deleted in new
chr13	41262214	41262331	ENSG00000120662.15|MTRF1|pc|chr13:41262214:41262331:-	0	-
#Partially deleted in new
chr13	41262410	41262481	ENSG00000120662.15|MTRF1|pc|chr13:41262410:41262481:-	0	-
#Deleted in new
chr13	41968400	41968472	ENSG00000278338.4|VWA8-AS1|lncRNA|chr13:41968400:41968472:+	0	+
#Deleted in new
chr13	41980792	41980977	ENSG00000278338.4|VWA8-AS1|lncRNA|chr13:41980792:41980977:+	0	+
#Deleted in new
chr13	41980792	41981565	ENSG00000278338.4|VWA8-AS1|lncRNA|chr13:41980792:41981565:+	0	+
#Deleted in new
chr13	42043726	42043948	ENSG00000231530.1|AL157932.1|lncRNA|chr13:42043726:42043948:-	0	-
#Partially deleted in new
chr13	42195762	42195959	ENSG00000102780.16|DGKH|pc|chr13:42195762:42195959:+	0	+
#Deleted in new
chr13	42252408	42252481	ENSG00000102780.16|DGKH|pc|chr13:42252408:42252481:+	0	+
#Deleted in new
chr13	42384256	42384466	ENSG00000283554.1|LINC02341|lncRNA|chr13:42384256:42384466:+	0	+
#Deleted in new
chr13	42411895	42412052	ENSG00000283554.1|LINC02341|lncRNA|chr13:42411895:42412052:+	0	+
#Deleted in new
chr13	42424891	42424978	ENSG00000283554.1|LINC02341|lncRNA|chr13:42424891:42424978:+	0	+
#Deleted in new
chr13	42437317	42437472	ENSG00000283554.1|LINC02341|lncRNA|chr13:42437317:42437472:+	0	+
#Deleted in new
chr13	42443966	42444144	ENSG00000283554.1|LINC02341|lncRNA|chr13:42443966:42444144:+	0	+
#Deleted in new
chr1	3424918	3425059	ENSG00000142611.16|PRDM16|pc|chr1:3424918:3425059:+	0	+
#Deleted in new
chr13	42571579	42571738	ENSG00000120659.14|TNFSF11|pc|chr13:42571579:42571738:+	0	+
#Deleted in new
chr13	42810365	42810630	ENSG00000271216.1|LINC01050|lncRNA|chr13:42810365:42810630:-	0	-
#Deleted in new
chr13	42842413	42842551	ENSG00000229546.1|LINC00428|lncRNA|chr13:42842413:42842551:-	0	-
#Deleted in new
chr13	42842798	42842887	ENSG00000229546.1|LINC00428|lncRNA|chr13:42842798:42842887:-	0	-
#Deleted in new
chr13	42991098	42991182	ENSG00000133106.14|EPSTI1|pc|chr13:42991098:42991182:-	0	-
#Deleted in new
chr13	42991098	42991231	ENSG00000133106.14|EPSTI1|pc|chr13:42991098:42991231:-	0	-
#Deleted in new
chr13	42991098	42991257	ENSG00000133106.14|EPSTI1|pc|chr13:42991098:42991257:-	0	-
#Deleted in new
chr13	43458464	43458518	ENSG00000238189.2|ENOX1-AS2|lncRNA|chr13:43458464:43458518:+	0	+
#Deleted in new
chr13	43823908	43824011	ENSG00000151773.12|CCDC122|pc|chr13:43823908:43824011:-	0	-
#Deleted in new
chr13	43854087	43856622	ENSG00000151773.12|CCDC122|pc|chr13:43854087:43856622:-	0	-
#Deleted in new
chr13	43874752	43874927	ENSG00000151773.12|CCDC122|pc|chr13:43874752:43874927:-	0	-
#Deleted in new
chr13	43874841	43874926	ENSG00000151773.12|CCDC122|pc|chr13:43874841:43874926:-	0	-
#Deleted in new
chr13	43874841	43874927	ENSG00000151773.12|CCDC122|pc|chr13:43874841:43874927:-	0	-
#Partially deleted in new
chr13	43879283	43879734	ENSG00000179630.10|LACC1|pc|chr13:43879283:43879734:+	0	+
#Deleted in new
chr13	43879557	43879734	ENSG00000179630.10|LACC1|pc|chr13:43879557:43879734:+	0	+
#Deleted in new
chr13	43879630	43879690	ENSG00000151773.12|CCDC122|pc|chr13:43879630:43879690:-	0	-
#Deleted in new
chr13	43879630	43879691	ENSG00000151773.12|CCDC122|pc|chr13:43879630:43879691:-	0	-
#Deleted in new
chr13	43879630	43879727	ENSG00000151773.12|CCDC122|pc|chr13:43879630:43879727:-	0	-
#Deleted in new
chr13	43879832	43880119	ENSG00000179630.10|LACC1|pc|chr13:43879832:43880119:+	0	+
#Partially deleted in new
chr13	43891448	43893931	ENSG00000179630.10|LACC1|pc|chr13:43891448:43893931:+	0	+
#Partially deleted in new
chr13	43891448	43893932	ENSG00000179630.10|LACC1|pc|chr13:43891448:43893932:+	0	+
#Deleted in new
chr13	43921571	43921679	ENSG00000233725.7|LINC00284|lncRNA|chr13:43921571:43921679:+	0	+
#Deleted in new
chr13	43941591	43941684	ENSG00000281883.1|AL512506.3|pc|chr13:43941591:43941684:+	0	+
#Deleted in new
chr13	43942422	43942613	ENSG00000233725.7|LINC00284|lncRNA|chr13:43942422:43942613:+	0	+
#Deleted in new
chr13	43942422	43942613	ENSG00000281883.1|AL512506.3|pc|chr13:43942422:43942613:+	0	+
#Deleted in new
chr13	44142545	44142696	ENSG00000227258.5|SMIM2-AS1|lncRNA|chr13:44142545:44142696:+	0	+
#Deleted in new
chr13	44146469	44146646	ENSG00000235285.1|SMIM2-IT1|lncRNA|chr13:44146469:44146646:-	0	-
#Deleted in new
chr13	44172698	44172873	ENSG00000227258.5|SMIM2-AS1|lncRNA|chr13:44172698:44172873:+	0	+
#Deleted in new
chr13	44400249	44400955	ENSG00000237361.2|TUSC8|lncRNA|chr13:44400249:44400955:-	0	-
#Partially deleted in new
chr13	44700919	44701016	ENSG00000237585.1|LINC00407|lncRNA|chr13:44700919:44701016:+	0	+
#Deleted in new
chr13	44799502	44801005	ENSG00000235097.1|LINC00330|lncRNA|chr13:44799502:44801005:-	0	-
#Deleted in new
chr13	44804719	44805030	ENSG00000235097.1|LINC00330|lncRNA|chr13:44804719:44805030:-	0	-
#Deleted in new
chr13	45001702	45002040	ENSG00000133114.17|GPALPP1|pc|chr13:45001702:45002040:+	0	+
#Deleted in new
chr13	45005109	45005241	ENSG00000133114.17|GPALPP1|pc|chr13:45005109:45005241:+	0	+
#Partially deleted in new
chr13	45033235	45037669	ENSG00000133114.17|GPALPP1|pc|chr13:45033235:45037669:+	0	+
#Deleted in new
chr13	45046592	45046741	ENSG00000223732.2|AL359706.1|lncRNA|chr13:45046592:45046741:-	0	-
#Deleted in new
chr13	45220865	45220909	ENSG00000188342.11|GTF2F2|pc|chr13:45220865:45220909:+	0	+
#Split in new
chr13	45333470	45337388	ENSG00000133112.16|TPT1|pc|chr13:45333470:45337388:-	0	-
#Split in new
chr13	45333470	45337553	ENSG00000133112.16|TPT1|pc|chr13:45333470:45337553:-	0	-
#Partially deleted in new
chr13	45341418	45341630	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45341418:45341630:+	0	+
#Partially deleted in new
chr13	45341419	45341614	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45341419:45341614:+	0	+
#Partially deleted in new
chr13	45341428	45341614	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45341428:45341614:+	0	+
#Deleted in new
chr13	45341490	45341630	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45341490:45341630:+	0	+
#Deleted in new
chr13	45341510	45341630	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45341510:45341630:+	0	+
#Deleted in new
chr13	45341512	45341614	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45341512:45341614:+	0	+
#Deleted in new
chr13	45341537	45341630	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45341537:45341630:+	0	+
#Deleted in new
chr13	45341591	45341630	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45341591:45341630:+	0	+
#Deleted in new
chr13	45341598	45341630	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45341598:45341630:+	0	+
#Deleted in new
chr13	45343425	45343540	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45343425:45343540:+	0	+
#Deleted in new
chr13	45344303	45344446	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45344303:45344446:+	0	+
#Deleted in new
chr13	45344304	45344446	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45344304:45344446:+	0	+
#Deleted in new
chr13	45344328	45344446	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45344328:45344446:+	0	+
#Deleted in new
chr13	45344378	45344446	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45344378:45344446:+	0	+
#Deleted in new
chr13	45344753	45344909	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45344753:45344909:+	0	+
#Deleted in new
chr13	45350322	45350546	ENSG00000228886.1|AL138963.1|lncRNA|chr13:45350322:45350546:+	0	+
#Deleted in new
chr13	45351264	45351350	ENSG00000228886.1|AL138963.1|lncRNA|chr13:45351264:45351350:+	0	+
#Deleted in new
chr13	45351896	45352014	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45351896:45352014:+	0	+
#Deleted in new
chr13	45360140	45360239	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45360140:45360239:+	0	+
#Deleted in new
chr13	45360140	45360486	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45360140:45360486:+	0	+
#Deleted in new
chr13	45369800	45369916	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45369800:45369916:+	0	+
#Deleted in new
chr13	45369958	45370182	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45369958:45370182:+	0	+
#Deleted in new
chr13	45369958	45370330	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45369958:45370330:+	0	+
#Deleted in new
chr13	45369958	45370507	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45369958:45370507:+	0	+
#Deleted in new
chr13	45370079	45370182	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45370079:45370182:+	0	+
#Partially deleted in new
chr13	45374933	45377215	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45374933:45377215:+	0	+
#Deleted in new
chr13	45377060	45377127	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45377060:45377127:+	0	+
#Deleted in new
chr13	45377060	45377215	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45377060:45377215:+	0	+
#Deleted in new
chr13	45377111	45377215	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45377111:45377215:+	0	+
#Deleted in new
chr13	45377139	45377215	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45377139:45377215:+	0	+
#Deleted in new
chr13	45378529	45378616	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45378529:45378616:+	0	+
#Deleted in new
chr13	45378529	45378620	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45378529:45378620:+	0	+
#Deleted in new
chr13	45378529	45378632	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45378529:45378632:+	0	+
#Deleted in new
chr13	45378529	45378663	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45378529:45378663:+	0	+
#Deleted in new
chr13	45378529	45378671	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45378529:45378671:+	0	+
#Deleted in new
chr13	45378559	45378671	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45378559:45378671:+	0	+
#Deleted in new
chr13	45379194	45379274	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45379194:45379274:+	0	+
#Deleted in new
chr13	45379194	45379335	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45379194:45379335:+	0	+
#Deleted in new
chr13	45379194	45380001	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45379194:45380001:+	0	+
#Deleted in new
chr13	45379283	45379335	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45379283:45379335:+	0	+
#Deleted in new
chr13	45379898	45380001	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45379898:45380001:+	0	+
#Deleted in new
chr13	45379925	45380001	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45379925:45380001:+	0	+
#Deleted in new
chr13	45381141	45381217	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45381141:45381217:+	0	+
#Deleted in new
chr13	45382824	45383235	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45382824:45383235:+	0	+
#Deleted in new
chr13	45383090	45383235	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45383090:45383235:+	0	+
#Deleted in new
chr13	45383759	45383838	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45383759:45383838:+	0	+
#Partially deleted in new
chr13	45387584	45389820	ENSG00000170919.15|TPT1-AS1|lncRNA|chr13:45387584:45389820:+	0	+
#Deleted in new
chr13	45411732	45411938	ENSG00000174032.16|SLC25A30|pc|chr13:45411732:45411938:-	0	-
#Deleted in new
chr13	45420247	45420371	ENSG00000251015.1|SLC25A30-AS1|lncRNA|chr13:45420247:45420371:+	0	+
#Deleted in new
chr13	45531150	45531309	ENSG00000136152.14|COG3|pc|chr13:45531150:45531309:+	0	+
#Deleted in new
chr13	45532009	45532109	ENSG00000136152.14|COG3|pc|chr13:45532009:45532109:+	0	+
#Deleted in new
chr1	34553	35174	ENSG00000237613.2|FAM138A|lncRNA|chr1:34553:35174:-	0	-
#Deleted in new
chr13	45555429	45555467	ENSG00000165837.11|ERICH6B|pc|chr13:45555429:45555467:-	0	-
#Partially deleted in new
chr13	45680183	45681491	ENSG00000235366.2|LINC01055|lncRNA|chr13:45680183:45681491:-	0	-
#Deleted in new
chr13	45685063	45685200	ENSG00000235366.2|LINC01055|lncRNA|chr13:45685063:45685200:-	0	-
#Deleted in new
chr13	45701026	45701184	ENSG00000235366.2|LINC01055|lncRNA|chr13:45701026:45701184:-	0	-
#Deleted in new
chr13	46001162	46001460	ENSG00000123200.16|ZC3H13|pc|chr13:46001162:46001460:-	0	-
#Deleted in new
chr13	46094852	46095002	ENSG00000235903.7|CPB2-AS1|lncRNA|chr13:46094852:46095002:+	0	+
#Deleted in new
chr13	46096276	46096531	ENSG00000235903.7|CPB2-AS1|lncRNA|chr13:46096276:46096531:+	0	+
#Deleted in new
chr13	46097109	46097399	ENSG00000235903.7|CPB2-AS1|lncRNA|chr13:46097109:46097399:+	0	+
#Deleted in new
chr13	46098397	46098781	ENSG00000235903.7|CPB2-AS1|lncRNA|chr13:46098397:46098781:+	0	+
#Deleted in new
chr13	46098397	46100024	ENSG00000235903.7|CPB2-AS1|lncRNA|chr13:46098397:46100024:+	0	+
#Deleted in new
chr13	46098397	46101347	ENSG00000235903.7|CPB2-AS1|lncRNA|chr13:46098397:46101347:+	0	+
#Deleted in new
chr13	46113183	46113332	ENSG00000235903.7|CPB2-AS1|lncRNA|chr13:46113183:46113332:+	0	+
#Partially deleted in new
chr13	46117863	46122699	ENSG00000278937.1|AL137141.1|lncRNA|chr13:46117863:46122699:+	0	+
#Deleted in new
chr13	46203100	46203230	ENSG00000136167.13|LCP1|pc|chr13:46203100:46203230:-	0	-
#Deleted in new
chr13	46377889	46378005	ENSG00000102445.18|RUBCNL|pc|chr13:46377889:46378005:-	0	-
#Deleted in new
chr13	46378446	46378645	ENSG00000102445.18|RUBCNL|pc|chr13:46378446:46378645:-	0	-
#Deleted in new
chr13	46387133	46387230	ENSG00000102445.18|RUBCNL|pc|chr13:46387133:46387230:-	0	-
#Deleted in new
chr13	46387133	46387233	ENSG00000102445.18|RUBCNL|pc|chr13:46387133:46387233:-	0	-
#Deleted in new
chr13	46387133	46387235	ENSG00000102445.18|RUBCNL|pc|chr13:46387133:46387235:-	0	-
#Deleted in new
chr13	46387133	46387252	ENSG00000102445.18|RUBCNL|pc|chr13:46387133:46387252:-	0	-
#Deleted in new
chr13	46387133	46387486	ENSG00000102445.18|RUBCNL|pc|chr13:46387133:46387486:-	0	-
#Deleted in new
chr13	46387133	46387500	ENSG00000102445.18|RUBCNL|pc|chr13:46387133:46387500:-	0	-
#Deleted in new
chr13	46455134	46455511	ENSG00000231817.7|LINC01198|lncRNA|chr13:46455134:46455511:-	0	-
#Deleted in new
chr13	46455336	46455511	ENSG00000231817.7|LINC01198|lncRNA|chr13:46455336:46455511:-	0	-
#Deleted in new
chr13	46455352	46455511	ENSG00000231817.7|LINC01198|lncRNA|chr13:46455352:46455511:-	0	-
#Deleted in new
chr13	46455368	46455511	ENSG00000231817.7|LINC01198|lncRNA|chr13:46455368:46455511:-	0	-
#Deleted in new
chr13	46457839	46457913	ENSG00000231817.7|LINC01198|lncRNA|chr13:46457839:46457913:-	0	-
#Deleted in new
chr13	46457839	46458238	ENSG00000231817.7|LINC01198|lncRNA|chr13:46457839:46458238:-	0	-
#Deleted in new
chr13	46464674	46464750	ENSG00000231817.7|LINC01198|lncRNA|chr13:46464674:46464750:-	0	-
#Deleted in new
chr13	46464674	46464819	ENSG00000231817.7|LINC01198|lncRNA|chr13:46464674:46464819:-	0	-
#Deleted in new
chr13	46464735	46464819	ENSG00000231817.7|LINC01198|lncRNA|chr13:46464735:46464819:-	0	-
#Deleted in new
chr13	46464740	46464819	ENSG00000231817.7|LINC01198|lncRNA|chr13:46464740:46464819:-	0	-
#Deleted in new
chr13	46465842	46466006	ENSG00000231817.7|LINC01198|lncRNA|chr13:46465842:46466006:-	0	-
#Deleted in new
chr13	46465908	46465987	ENSG00000231817.7|LINC01198|lncRNA|chr13:46465908:46465987:-	0	-
#Deleted in new
chr13	46466608	46466686	ENSG00000231817.7|LINC01198|lncRNA|chr13:46466608:46466686:-	0	-
#Deleted in new
chr13	46466608	46466709	ENSG00000231817.7|LINC01198|lncRNA|chr13:46466608:46466709:-	0	-
#Deleted in new
chr13	46466608	46466776	ENSG00000231817.7|LINC01198|lncRNA|chr13:46466608:46466776:-	0	-
#Deleted in new
chr13	46466608	46466783	ENSG00000231817.7|LINC01198|lncRNA|chr13:46466608:46466783:-	0	-
#Deleted in new
chr13	46474245	46474334	ENSG00000277228.1|AL138686.1|lncRNA|chr13:46474245:46474334:+	0	+
#Deleted in new
chr13	46793396	46793438	ENSG00000139684.13|ESD|pc|chr13:46793396:46793438:-	0	-
#Deleted in new
chr13	46793396	46793444	ENSG00000139684.13|ESD|pc|chr13:46793396:46793444:-	0	-
#Deleted in new
chr13	46797104	46797133	ENSG00000139684.13|ESD|pc|chr13:46797104:46797133:-	0	-
#Deleted in new
chr13	46797104	46797232	ENSG00000139684.13|ESD|pc|chr13:46797104:46797232:-	0	-
#Deleted in new
chr13	46852142	46852226	ENSG00000224517.6|HTR2A-AS1|lncRNA|chr13:46852142:46852226:+	0	+
#Deleted in new
chr13	46852151	46852226	ENSG00000224517.6|HTR2A-AS1|lncRNA|chr13:46852151:46852226:+	0	+
#Partially deleted in new
chr13	46853938	46854247	ENSG00000224517.6|HTR2A-AS1|lncRNA|chr13:46853938:46854247:+	0	+
#Deleted in new
chr1	34718267	34718409	ENSG00000163866.8|SMIM12|pc|chr1:34718267:34718409:-	0	-
#Partially deleted in new
chr1	3473392	3474457	ENSG00000130762.14|ARHGEF16|pc|chr1:3473392:3474457:+	0	+
#Deleted in new
chr13	47825329	47825427	ENSG00000228573.1|AL138962.1|lncRNA|chr13:47825329:47825427:-	0	-
#Deleted in new
chr13	47826138	47826290	ENSG00000228573.1|AL138962.1|lncRNA|chr13:47826138:47826290:-	0	-
#Deleted in new
chr13	47835795	47835956	ENSG00000228573.1|AL138962.1|lncRNA|chr13:47835795:47835956:-	0	-
#Partially deleted in new
chr1	34787987	34788097	ENSG00000255811.1|AL121988.1|lncRNA|chr1:34787987:34788097:-	0	-
#Deleted in new
chr13	47905328	47905398	ENSG00000234689.1|LINC00444|lncRNA|chr13:47905328:47905398:-	0	-
#Deleted in new
chr13	47907017	47907135	ENSG00000234689.1|LINC00444|lncRNA|chr13:47907017:47907135:-	0	-
#Deleted in new
chr13	47907330	47907357	ENSG00000234689.1|LINC00444|lncRNA|chr13:47907330:47907357:-	0	-
#Deleted in new
chr13	47930152	47932622	ENSG00000260388.2|LINC00562|lncRNA|chr13:47930152:47932622:-	0	-
#Deleted in new
chr13	47936490	47936773	ENSG00000136143.14|SUCLA2|pc|chr13:47936490:47936773:-	0	-
#Deleted in new
chr13	47936501	47936773	ENSG00000136143.14|SUCLA2|pc|chr13:47936501:47936773:-	0	-
#Deleted in new
chr13	47936617	47936773	ENSG00000136143.14|SUCLA2|pc|chr13:47936617:47936773:-	0	-
#Deleted in new
chr13	47945730	47945939	ENSG00000136143.14|SUCLA2|pc|chr13:47945730:47945939:-	0	-
#Deleted in new
chr13	47956839	47956878	ENSG00000136143.14|SUCLA2|pc|chr13:47956839:47956878:-	0	-
#Deleted in new
chr13	47956872	47956878	ENSG00000136143.14|SUCLA2|pc|chr13:47956872:47956878:-	0	-
#Deleted in new
chr13	47994799	47994896	ENSG00000136143.14|SUCLA2|pc|chr13:47994799:47994896:-	0	-
#Deleted in new
chr13	48002434	48002552	ENSG00000227848.1|SUCLA2-AS1|lncRNA|chr13:48002434:48002552:+	0	+
#Deleted in new
chr13	48041750	48042184	ENSG00000276968.1|AL158196.1|lncRNA|chr13:48041750:48042184:-	0	-
#Deleted in new
chr13	48053322	48053491	ENSG00000136146.14|MED4|pc|chr13:48053322:48053491:-	0	-
#Deleted in new
chr13	48077441	48077553	ENSG00000229111.1|MED4-AS1|lncRNA|chr13:48077441:48077553:+	0	+
#Deleted in new
chr13	48093547	48093687	ENSG00000136146.14|MED4|pc|chr13:48093547:48093687:-	0	-
#Deleted in new
chr13	48254899	48254970	ENSG00000136156.12|ITM2B|pc|chr13:48254899:48254970:+	0	+
#Deleted in new
chr13	48389566	48389812	ENSG00000139679.15|LPAR6|pc|chr13:48389566:48389812:-	0	-
#Deleted in new
chr13	48389570	48389812	ENSG00000139679.15|LPAR6|pc|chr13:48389570:48389812:-	0	-
#Deleted in new
chr13	48391399	48391531	ENSG00000139679.15|LPAR6|pc|chr13:48391399:48391531:-	0	-
#Deleted in new
chr13	48406555	48406709	ENSG00000139679.15|LPAR6|pc|chr13:48406555:48406709:-	0	-
#Deleted in new
chr13	48415699	48415810	ENSG00000139679.15|LPAR6|pc|chr13:48415699:48415810:-	0	-
#Deleted in new
chr13	48415699	48415813	ENSG00000139679.15|LPAR6|pc|chr13:48415699:48415813:-	0	-
#Deleted in new
chr13	48415699	48415816	ENSG00000139679.15|LPAR6|pc|chr13:48415699:48415816:-	0	-
#Deleted in new
chr13	48416312	48416564	ENSG00000139679.15|LPAR6|pc|chr13:48416312:48416564:-	0	-
#Deleted in new
chr13	48417166	48417320	ENSG00000139679.15|LPAR6|pc|chr13:48417166:48417320:-	0	-
#Deleted in new
chr13	48422649	48422790	ENSG00000139679.15|LPAR6|pc|chr13:48422649:48422790:-	0	-
#Deleted in new
chr13	48423992	48424119	ENSG00000139679.15|LPAR6|pc|chr13:48423992:48424119:-	0	-
#Deleted in new
chr13	48426579	48426795	ENSG00000139679.15|LPAR6|pc|chr13:48426579:48426795:-	0	-
#Deleted in new
chr13	48426858	48426907	ENSG00000139679.15|LPAR6|pc|chr13:48426858:48426907:-	0	-
#Deleted in new
chr13	48439608	48439812	ENSG00000139679.15|LPAR6|pc|chr13:48439608:48439812:-	0	-
#Deleted in new
chr13	48444552	48444667	ENSG00000139679.15|LPAR6|pc|chr13:48444552:48444667:-	0	-
#Deleted in new
chr13	48444552	48444704	ENSG00000139679.15|LPAR6|pc|chr13:48444552:48444704:-	0	-
#Deleted in new
chr13	48444827	48445221	ENSG00000139687.13|RB1|pc|chr13:48444827:48445221:+	0	+
#Deleted in new
chr13	48570638	48570841	ENSG00000233456.1|LINC01077|lncRNA|chr13:48570638:48570841:-	0	-
#Deleted in new
chr13	48693437	48693510	ENSG00000152207.7|CYSLTR2|pc|chr13:48693437:48693510:+	0	+
#Deleted in new
chr13	48694670	48694799	ENSG00000152207.7|CYSLTR2|pc|chr13:48694670:48694799:+	0	+
#Deleted in new
chr13	48696525	48696626	ENSG00000152207.7|CYSLTR2|pc|chr13:48696525:48696626:+	0	+
#Deleted in new
chr1	3487245	3487627	ENSG00000272088.1|AL512413.1|lncRNA|chr1:3487245:3487627:+	0	+
#Partially deleted in new
chr13	49145777	49146847	ENSG00000102531.16|FNDC3A|pc|chr13:49145777:49146847:+	0	+
#Deleted in new
chr13	49265878	49265926	ENSG00000102543.14|CDADC1|pc|chr13:49265878:49265926:+	0	+
#Deleted in new
chr13	49265878	49266003	ENSG00000102543.14|CDADC1|pc|chr13:49265878:49266003:+	0	+
#Deleted in new
chr13	49393012	49393079	ENSG00000102547.18|CAB39L|pc|chr13:49393012:49393079:-	0	-
#Deleted in new
chr13	49412911	49413040	ENSG00000102547.18|CAB39L|pc|chr13:49412911:49413040:-	0	-
#Deleted in new
chr13	49413723	49413751	ENSG00000102547.18|CAB39L|pc|chr13:49413723:49413751:-	0	-
#Deleted in new
chr13	49414003	49414199	ENSG00000102547.18|CAB39L|pc|chr13:49414003:49414199:-	0	-
#Deleted in new
chr13	49420325	49420475	ENSG00000102547.18|CAB39L|pc|chr13:49420325:49420475:-	0	-
#Partially deleted in new
chr13	49444373	49444857	ENSG00000136169.16|SETDB2|pc|chr13:49444373:49444857:+	0	+
#Partially deleted in new
chr13	49444683	49444857	ENSG00000136169.16|SETDB2|pc|chr13:49444683:49444857:+	0	+
#Partially deleted in new
chr13	49444758	49444857	ENSG00000136169.16|SETDB2|pc|chr13:49444758:49444857:+	0	+
#Deleted in new
chr13	49445552	49445952	ENSG00000136169.16|SETDB2|pc|chr13:49445552:49445952:+	0	+
#Deleted in new
chr13	49464020	49464056	ENSG00000136169.16|SETDB2|pc|chr13:49464020:49464056:+	0	+
#Partially deleted in new
chr13	49491731	49495002	ENSG00000136169.16|SETDB2|pc|chr13:49491731:49495002:+	0	+
#Partially deleted in new
chr13	49491731	49495003	ENSG00000136169.16|SETDB2|pc|chr13:49491731:49495003:+	0	+
#Deleted in new
chr13	49495609	49496095	ENSG00000136147.17|PHF11|pc|chr13:49495609:49496095:+	0	+
#Deleted in new
chr13	49495664	49496095	ENSG00000136147.17|PHF11|pc|chr13:49495664:49496095:+	0	+
#Deleted in new
chr13	49495960	49496095	ENSG00000136147.17|PHF11|pc|chr13:49495960:49496095:+	0	+
#Deleted in new
chr13	49495969	49496095	ENSG00000136147.17|PHF11|pc|chr13:49495969:49496095:+	0	+
#Deleted in new
chr13	49495983	49496095	ENSG00000136147.17|PHF11|pc|chr13:49495983:49496095:+	0	+
#Deleted in new
chr13	49496012	49496095	ENSG00000136147.17|PHF11|pc|chr13:49496012:49496095:+	0	+
#Deleted in new
chr13	49496015	49496095	ENSG00000136147.17|PHF11|pc|chr13:49496015:49496095:+	0	+
#Deleted in new
chr13	49496235	49496448	ENSG00000136147.17|PHF11|pc|chr13:49496235:49496448:+	0	+
#Deleted in new
chr13	49496354	49496600	ENSG00000136147.17|PHF11|pc|chr13:49496354:49496600:+	0	+
#Deleted in new
chr13	49496391	49496482	ENSG00000136147.17|PHF11|pc|chr13:49496391:49496482:+	0	+
#Deleted in new
chr13	49496396	49496482	ENSG00000136147.17|PHF11|pc|chr13:49496396:49496482:+	0	+
#Deleted in new
chr13	49496399	49496482	ENSG00000136147.17|PHF11|pc|chr13:49496399:49496482:+	0	+
#Deleted in new
chr13	49521137	49521500	ENSG00000136147.17|PHF11|pc|chr13:49521137:49521500:+	0	+
#Partially deleted in new
chr13	49525772	49525937	ENSG00000136147.17|PHF11|pc|chr13:49525772:49525937:+	0	+
#Deleted in new
chr13	49537869	49538083	ENSG00000136144.11|RCBTB1|pc|chr13:49537869:49538083:-	0	-
#Deleted in new
chr13	49580504	49580584	ENSG00000136144.11|RCBTB1|pc|chr13:49580504:49580584:-	0	-
#Deleted in new
chr13	49585443	49585583	ENSG00000136144.11|RCBTB1|pc|chr13:49585443:49585583:-	0	-
#Partially deleted in new
chr13	49630429	49633872	ENSG00000152213.3|ARL11|pc|chr13:49630429:49633872:+	0	+
#Deleted in new
chr13	49632179	49632237	ENSG00000152213.3|ARL11|pc|chr13:49632179:49632237:+	0	+
#Deleted in new
chr13	49661865	49661927	ENSG00000123179.13|EBPL|pc|chr13:49661865:49661927:-	0	-
#Deleted in new
chr13	49686474	49686595	ENSG00000123179.13|EBPL|pc|chr13:49686474:49686595:-	0	-
#Partially deleted in new
chr1	34975698	34977402	ENSG00000241014.1|AC114490.1|lncRNA|chr1:34975698:34977402:-	0	-
#Deleted in new
chr1	34977930	34978084	ENSG00000241014.1|AC114490.1|lncRNA|chr1:34977930:34978084:-	0	-
#Partially deleted in new
chr13	49982551	49983754	ENSG00000231607.10|DLEU2|lncRNA|chr13:49982551:49983754:-	0	-
#Deleted in new
chr13	49988585	49988621	ENSG00000231607.10|DLEU2|lncRNA|chr13:49988585:49988621:-	0	-
#Deleted in new
chr13	49993792	49993961	ENSG00000231607.10|DLEU2|lncRNA|chr13:49993792:49993961:-	0	-
#Deleted in new
chr13	49995887	49995975	ENSG00000204977.9|TRIM13|pc|chr13:49995887:49995975:+	0	+
#Deleted in new
chr13	49996502	49996850	ENSG00000204977.9|TRIM13|pc|chr13:49996502:49996850:+	0	+
#Deleted in new
chr13	49996812	49996850	ENSG00000204977.9|TRIM13|pc|chr13:49996812:49996850:+	0	+
#Deleted in new
chr13	49997018	49997131	ENSG00000204977.9|TRIM13|pc|chr13:49997018:49997131:+	0	+
#Deleted in new
chr13	49997031	49997763	ENSG00000204977.9|TRIM13|pc|chr13:49997031:49997763:+	0	+
#Deleted in new
chr13	49997036	49997216	ENSG00000204977.9|TRIM13|pc|chr13:49997036:49997216:+	0	+
#Deleted in new
chr13	49997058	49997216	ENSG00000204977.9|TRIM13|pc|chr13:49997058:49997216:+	0	+
#Deleted in new
chr13	49997073	49997419	ENSG00000231607.10|DLEU2|lncRNA|chr13:49997073:49997419:-	0	-
#Deleted in new
chr13	49997666	49997763	ENSG00000204977.9|TRIM13|pc|chr13:49997666:49997763:+	0	+
#Deleted in new
chr13	50000994	50001108	ENSG00000204977.9|TRIM13|pc|chr13:50000994:50001108:+	0	+
#Deleted in new
chr13	50018822	50018920	ENSG00000198553.8|KCNRG|pc|chr13:50018822:50018920:+	0	+
#Deleted in new
chr13	50029277	50029492	ENSG00000231607.10|DLEU2|lncRNA|chr13:50029277:50029492:-	0	-
#Deleted in new
chr13	50045117	50045232	ENSG00000231607.10|DLEU2|lncRNA|chr13:50045117:50045232:-	0	-
#Deleted in new
chr13	50083809	50083971	ENSG00000176124.11|DLEU1|lncRNA|chr13:50083809:50083971:+	0	+
#Deleted in new
chr13	50104703	50105297	ENSG00000176124.11|DLEU1|lncRNA|chr13:50104703:50105297:+	0	+
#Deleted in new
chr13	50104703	50107218	ENSG00000176124.11|DLEU1|lncRNA|chr13:50104703:50107218:+	0	+
#Deleted in new
chr13	50185879	50186070	ENSG00000176124.11|DLEU1|lncRNA|chr13:50185879:50186070:+	0	+
#Deleted in new
chr13	50221272	50221299	ENSG00000176124.11|DLEU1|lncRNA|chr13:50221272:50221299:+	0	+
#Deleted in new
chr13	50248300	50248378	ENSG00000176124.11|DLEU1|lncRNA|chr13:50248300:50248378:+	0	+
#Deleted in new
chr13	50274931	50275046	ENSG00000176124.11|DLEU1|lncRNA|chr13:50274931:50275046:+	0	+
#Deleted in new
chr13	50293421	50293533	ENSG00000176124.11|DLEU1|lncRNA|chr13:50293421:50293533:+	0	+
#Deleted in new
chr13	50310161	50310341	ENSG00000176124.11|DLEU1|lncRNA|chr13:50310161:50310341:+	0	+
#Deleted in new
chr13	50329633	50329712	ENSG00000176124.11|DLEU1|lncRNA|chr13:50329633:50329712:+	0	+
#Deleted in new
chr13	50338675	50338834	ENSG00000176124.11|DLEU1|lncRNA|chr13:50338675:50338834:+	0	+
#Deleted in new
chr13	50390197	50390291	ENSG00000176124.11|DLEU1|lncRNA|chr13:50390197:50390291:+	0	+
#Deleted in new
chr13	50397443	50397896	ENSG00000176124.11|DLEU1|lncRNA|chr13:50397443:50397896:+	0	+
#Deleted in new
chr13	50401225	50401366	ENSG00000176124.11|DLEU1|lncRNA|chr13:50401225:50401366:+	0	+
#Deleted in new
chr13	50401464	50401639	ENSG00000176124.11|DLEU1|lncRNA|chr13:50401464:50401639:+	0	+
#Deleted in new
chr13	50404430	50404524	ENSG00000176124.11|DLEU1|lncRNA|chr13:50404430:50404524:+	0	+
#Deleted in new
chr13	50433412	50433550	ENSG00000176124.11|DLEU1|lncRNA|chr13:50433412:50433550:+	0	+
#Deleted in new
chr13	50475179	50475566	ENSG00000176124.11|DLEU1|lncRNA|chr13:50475179:50475566:+	0	+
#Deleted in new
chr13	50493471	50493534	ENSG00000176124.11|DLEU1|lncRNA|chr13:50493471:50493534:+	0	+
#Deleted in new
chr13	50495175	50495469	ENSG00000176124.11|DLEU1|lncRNA|chr13:50495175:50495469:+	0	+
#Deleted in new
chr13	50502811	50502880	ENSG00000176124.11|DLEU1|lncRNA|chr13:50502811:50502880:+	0	+
#Partially deleted in new
chr13	50512611	50512893	ENSG00000176124.11|DLEU1|lncRNA|chr13:50512611:50512893:+	0	+
#Deleted in new
chr13	50533193	50533861	ENSG00000176124.11|DLEU1|lncRNA|chr13:50533193:50533861:+	0	+
#Deleted in new
chr1	35059785	35059925	ENSG00000197056.9|ZMYM1|pc|chr1:35059785:35059925:+	0	+
#Partially deleted in new
chr13	50631276	50631599	ENSG00000176124.11|DLEU1|lncRNA|chr13:50631276:50631599:+	0	+
#Deleted in new
chr13	50648589	50648642	ENSG00000176124.11|DLEU1|lncRNA|chr13:50648589:50648642:+	0	+
#Deleted in new
chr13	50715425	50715483	ENSG00000186047.9|DLEU7|pc|chr13:50715425:50715483:-	0	-
#Deleted in new
chr13	50719646	50719710	ENSG00000176124.11|DLEU1|lncRNA|chr13:50719646:50719710:+	0	+
#Deleted in new
chr1	35078993	35079219	ENSG00000197056.9|ZMYM1|pc|chr1:35078993:35079219:+	0	+
#Deleted in new
chr13	50808539	50808706	ENSG00000237152.3|DLEU7-AS1|lncRNA|chr13:50808539:50808706:+	0	+
#Deleted in new
chr13	50818520	50818592	ENSG00000237152.3|DLEU7-AS1|lncRNA|chr13:50818520:50818592:+	0	+
#Partially deleted in new
chr13	50862171	50863182	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50862171:50863182:-	0	-
#Deleted in new
chr13	50865051	50865157	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50865051:50865157:-	0	-
#Deleted in new
chr13	50866204	50866361	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50866204:50866361:-	0	-
#Deleted in new
chr13	50876685	50876962	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50876685:50876962:-	0	-
#Deleted in new
chr13	50882047	50882645	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50882047:50882645:-	0	-
#Deleted in new
chr13	50882397	50882643	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50882397:50882643:-	0	-
#Deleted in new
chr13	50882463	50882645	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50882463:50882645:-	0	-
#Deleted in new
chr13	50882510	50882645	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50882510:50882645:-	0	-
#Deleted in new
chr13	50882551	50882645	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50882551:50882645:-	0	-
#Deleted in new
chr13	50882608	50882645	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50882608:50882645:-	0	-
#Deleted in new
chr13	50889608	50889735	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50889608:50889735:-	0	-
#Deleted in new
chr13	50891303	50891474	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50891303:50891474:-	0	-
#Deleted in new
chr13	50891303	50891504	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50891303:50891504:-	0	-
#Deleted in new
chr13	50891303	50891642	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50891303:50891642:-	0	-
#Partially deleted in new
chr13	50904720	50905156	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50904720:50905156:-	0	-
#Deleted in new
chr13	50907816	50908201	ENSG00000233672.6|RNASEH2B-AS1|lncRNA|chr13:50907816:50908201:-	0	-
#Partially deleted in new
chr13	50909677	50910140	ENSG00000136104.19|RNASEH2B|pc|chr13:50909677:50910140:+	0	+
#Deleted in new
chr13	50930113	50930155	ENSG00000136104.19|RNASEH2B|pc|chr13:50930113:50930155:+	0	+
#Deleted in new
chr1	35093238	35093441	ENSG00000197056.9|ZMYM1|pc|chr1:35093238:35093441:+	0	+
#Deleted in new
chr1	35093319	35093441	ENSG00000197056.9|ZMYM1|pc|chr1:35093319:35093441:+	0	+
#Deleted in new
chr1	35093393	35093441	ENSG00000197056.9|ZMYM1|pc|chr1:35093393:35093441:+	0	+
#Deleted in new
chr13	50950070	50950318	ENSG00000136104.19|RNASEH2B|pc|chr13:50950070:50950318:+	0	+
#Deleted in new
chr13	51171987	51172222	ENSG00000226792.7|C13orf42|pc|chr13:51171987:51172222:-	0	-
#Deleted in new
chr13	51172252	51172388	ENSG00000226792.7|C13orf42|pc|chr13:51172252:51172388:-	0	-
#Deleted in new
chr13	51180177	51180967	ENSG00000274652.1|AL157817.1|lncRNA|chr13:51180177:51180967:+	0	+
#Deleted in new
chr13	51200046	51200252	ENSG00000226792.7|C13orf42|pc|chr13:51200046:51200252:-	0	-
#Deleted in new
chr13	51245311	51245419	ENSG00000150510.16|FAM124A|pc|chr13:51245311:51245419:+	0	+
#Deleted in new
chr13	51335772	51335869	ENSG00000253309.6|SERPINE3|pc|chr13:51335772:51335869:+	0	+
#Deleted in new
chr1	35141514	35143033	ENSG00000284640.1|AL590434.1|lncRNA|chr1:35141514:35143033:-	0	-
#Deleted in new
chr1	35144866	35145096	ENSG00000284640.1|AL590434.1|lncRNA|chr1:35144866:35145096:-	0	-
#Deleted in new
chr13	51462265	51462419	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51462265:51462419:+	0	+
#Deleted in new
chr1	35146298	35146435	ENSG00000284640.1|AL590434.1|lncRNA|chr1:35146298:35146435:-	0	-
#Deleted in new
chr13	51468771	51468894	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51468771:51468894:+	0	+
#Deleted in new
chr13	51468771	51469423	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51468771:51469423:+	0	+
#Deleted in new
chr13	51471837	51472075	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51471837:51472075:+	0	+
#Deleted in new
chr13	51486602	51486893	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51486602:51486893:+	0	+
#Deleted in new
chr13	51490462	51490638	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51490462:51490638:+	0	+
#Deleted in new
chr13	51495595	51495669	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51495595:51495669:+	0	+
#Deleted in new
chr13	51500104	51500501	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51500104:51500501:+	0	+
#Deleted in new
chr13	51506542	51506638	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51506542:51506638:+	0	+
#Deleted in new
chr13	51508701	51508856	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51508701:51508856:+	0	+
#Deleted in new
chr13	51512188	51512336	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51512188:51512336:+	0	+
#Deleted in new
chr13	51515648	51515956	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51515648:51515956:+	0	+
#Deleted in new
chr13	51518232	51518427	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51518232:51518427:+	0	+
#Deleted in new
chr13	51518232	51518468	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51518232:51518468:+	0	+
#Deleted in new
chr13	51522054	51522241	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51522054:51522241:+	0	+
#Partially deleted in new
chr13	51541557	51542184	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51541557:51542184:+	0	+
#Deleted in new
chr13	51541924	51542185	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51541924:51542185:+	0	+
#Deleted in new
chr13	51549118	51549230	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51549118:51549230:+	0	+
#Deleted in new
chr13	51549709	51549754	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51549709:51549754:+	0	+
#Deleted in new
chr13	51549709	51549802	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51549709:51549802:+	0	+
#Deleted in new
chr13	51549709	51549875	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51549709:51549875:+	0	+
#Deleted in new
chr13	51549709	51549892	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51549709:51549892:+	0	+
#Deleted in new
chr13	51549709	51549906	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51549709:51549906:+	0	+
#Deleted in new
chr13	51549709	51549992	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51549709:51549992:+	0	+
#Deleted in new
chr13	51549709	51550163	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51549709:51550163:+	0	+
#Deleted in new
chr13	51551124	51551188	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51551124:51551188:+	0	+
#Deleted in new
chr13	51552082	51552335	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51552082:51552335:+	0	+
#Deleted in new
chr13	51552082	51552364	ENSG00000236778.7|INTS6-AS1|lncRNA|chr13:51552082:51552364:+	0	+
#Deleted in new
chr13	51767992	51768296	ENSG00000102796.10|DHRS12|pc|chr13:51767992:51768296:-	0	-
#Deleted in new
chr13	51767994	51769293	ENSG00000102796.10|DHRS12|pc|chr13:51767994:51769293:-	0	-
#Deleted in new
chr13	51768614	51768729	ENSG00000102796.10|DHRS12|pc|chr13:51768614:51768729:-	0	-
#Deleted in new
chr13	51769155	51769293	ENSG00000102796.10|DHRS12|pc|chr13:51769155:51769293:-	0	-
#Deleted in new
chr13	51772765	51773033	ENSG00000102796.10|DHRS12|pc|chr13:51772765:51773033:-	0	-
#Partially deleted in new
chr1	35177318	35177661	ENSG00000116560.10|SFPQ|pc|chr1:35177318:35177661:-	0	-
#Deleted in new
chr13	51773920	51774034	ENSG00000102796.10|DHRS12|pc|chr13:51773920:51774034:-	0	-
#Deleted in new
chr13	51773929	51774034	ENSG00000102796.10|DHRS12|pc|chr13:51773929:51774034:-	0	-
#Deleted in new
chr13	51773929	51774124	ENSG00000102796.10|DHRS12|pc|chr13:51773929:51774124:-	0	-
#Deleted in new
chr13	51776456	51776525	ENSG00000102796.10|DHRS12|pc|chr13:51776456:51776525:-	0	-
#Deleted in new
chr13	51777059	51777121	ENSG00000102796.10|DHRS12|pc|chr13:51777059:51777121:-	0	-
#Deleted in new
chr13	51777242	51777383	ENSG00000102796.10|DHRS12|pc|chr13:51777242:51777383:-	0	-
#Deleted in new
chr13	51790010	51790062	ENSG00000102796.10|DHRS12|pc|chr13:51790010:51790062:-	0	-
#Deleted in new
chr13	51790010	51790076	ENSG00000102796.10|DHRS12|pc|chr13:51790010:51790076:-	0	-
#Deleted in new
chr13	51790010	51790092	ENSG00000102796.10|DHRS12|pc|chr13:51790010:51790092:-	0	-
#Deleted in new
chr13	51790022	51790092	ENSG00000102796.10|DHRS12|pc|chr13:51790022:51790092:-	0	-
#Deleted in new
chr13	51791164	51791257	ENSG00000102796.10|DHRS12|pc|chr13:51791164:51791257:-	0	-
#Deleted in new
chr13	51797825	51797908	ENSG00000102796.10|DHRS12|pc|chr13:51797825:51797908:-	0	-
#Deleted in new
chr13	51799533	51799667	ENSG00000102796.10|DHRS12|pc|chr13:51799533:51799667:-	0	-
#Deleted in new
chr13	51803542	51803723	ENSG00000102796.10|DHRS12|pc|chr13:51803542:51803723:-	0	-
#Deleted in new
chr13	51803837	51805630	ENSG00000231856.2|AL162377.1|lncRNA|chr13:51803837:51805630:+	0	+
#Deleted in new
chr13	51804053	51804098	ENSG00000102796.10|DHRS12|pc|chr13:51804053:51804098:-	0	-
#Deleted in new
chr13	51804053	51804123	ENSG00000102796.10|DHRS12|pc|chr13:51804053:51804123:-	0	-
#Deleted in new
chr13	51804053	51804157	ENSG00000102796.10|DHRS12|pc|chr13:51804053:51804157:-	0	-
#Deleted in new
chr13	51804296	51804801	ENSG00000231856.2|AL162377.1|lncRNA|chr13:51804296:51804801:+	0	+
#Deleted in new
chr13	51813156	51813832	ENSG00000231856.2|AL162377.1|lncRNA|chr13:51813156:51813832:+	0	+
#Partially deleted in new
chr13	51813346	51817113	ENSG00000281106.2|LINC00282|pc|chr13:51813346:51817113:-	0	-
#Deleted in new
chr13	51816735	51817113	ENSG00000281106.2|LINC00282|pc|chr13:51816735:51817113:-	0	-
#Deleted in new
chr13	51816862	51817113	ENSG00000281106.2|LINC00282|pc|chr13:51816862:51817113:-	0	-
#Deleted in new
chr13	51822054	51822137	ENSG00000281106.2|LINC00282|pc|chr13:51822054:51822137:-	0	-
#Deleted in new
chr13	51826565	51826625	ENSG00000281106.2|LINC00282|pc|chr13:51826565:51826625:-	0	-
#Deleted in new
chr13	51838472	51838553	ENSG00000281106.2|LINC00282|pc|chr13:51838472:51838553:-	0	-
#Deleted in new
chr13	51845015	51845150	ENSG00000281106.2|LINC00282|pc|chr13:51845015:51845150:-	0	-
#Deleted in new
chr13	51845015	51845152	ENSG00000281106.2|LINC00282|pc|chr13:51845015:51845152:-	0	-
#Deleted in new
chr13	51845015	51845175	ENSG00000281106.2|LINC00282|pc|chr13:51845015:51845175:-	0	-
#Deleted in new
chr13	51921250	51921587	ENSG00000279677.1|AL162377.2|lncRNA|chr13:51921250:51921587:+	0	+
#Deleted in new
chr13	52015782	52017713	ENSG00000253710.2|ALG11|pc|chr13:52015782:52017713:+	0	+
#Partially deleted in new
chr13	52020568	52023779	ENSG00000253710.2|ALG11|pc|chr13:52020568:52023779:+	0	+
#Duplicated in new
chr13	52028318	52033600	ENSG00000253797.2|UTP14C|pc|chr13:52028318:52033600:+	0	+
#Partially deleted in new
chr13	52033610	52037218	ENSG00000197168.11|NEK5|pc|chr13:52033610:52037218:-	0	-
#Deleted in new
chr13	52082237	52082312	ENSG00000197168.11|NEK5|pc|chr13:52082237:52082312:-	0	-
#Deleted in new
chr13	52093053	52093235	ENSG00000197168.11|NEK5|pc|chr13:52093053:52093235:-	0	-
#Partially deleted in new
chr13	52159197	52159535	ENSG00000136098.16|NEK3|pc|chr13:52159197:52159535:-	0	-
#Deleted in new
chr13	52334294	52334377	ENSG00000271564.1|LINC02333|lncRNA|chr13:52334294:52334377:+	0	+
#Deleted in new
chr13	52340892	52341057	ENSG00000271564.1|LINC02333|lncRNA|chr13:52340892:52341057:+	0	+
#Deleted in new
chr13	52341292	52341896	ENSG00000271564.1|LINC02333|lncRNA|chr13:52341292:52341896:+	0	+
#Deleted in new
chr1	35244	35481	ENSG00000237613.2|FAM138A|lncRNA|chr1:35244:35481:-	0	-
#Deleted in new
chr13	52455971	52456179	ENSG00000136108.14|CKAP2|pc|chr13:52455971:52456179:+	0	+
#Deleted in new
chr13	52456007	52456179	ENSG00000136108.14|CKAP2|pc|chr13:52456007:52456179:+	0	+
#Deleted in new
chr13	52484160	52484284	ENSG00000235660.1|LINC00345|lncRNA|chr13:52484160:52484284:-	0	-
#Deleted in new
chr13	52484519	52484680	ENSG00000235660.1|LINC00345|lncRNA|chr13:52484519:52484680:-	0	-
#Deleted in new
chr13	52488992	52489343	ENSG00000244471.5|AL137058.1|lncRNA|chr13:52488992:52489343:+	0	+
#Deleted in new
chr13	52490108	52490215	ENSG00000244471.5|AL137058.1|lncRNA|chr13:52490108:52490215:+	0	+
#Deleted in new
chr13	52497096	52500195	ENSG00000280296.1|AL137058.3|lncRNA|chr13:52497096:52500195:-	0	-
#Deleted in new
chr13	52497561	52497674	ENSG00000244471.5|AL137058.1|lncRNA|chr13:52497561:52497674:+	0	+
#Deleted in new
chr13	52499042	52499144	ENSG00000244471.5|AL137058.1|lncRNA|chr13:52499042:52499144:+	0	+
#Deleted in new
chr13	52499042	52499305	ENSG00000244471.5|AL137058.1|lncRNA|chr13:52499042:52499305:+	0	+
#Partially deleted in new
chr13	52600041	52600220	ENSG00000273784.4|AL137058.2|lncRNA|chr13:52600041:52600220:+	0	+
#Partially deleted in new
chr13	52600074	52600220	ENSG00000273784.4|AL137058.2|lncRNA|chr13:52600074:52600220:+	0	+
#Deleted in new
chr13	52600137	52600220	ENSG00000273784.4|AL137058.2|lncRNA|chr13:52600137:52600220:+	0	+
#Deleted in new
chr13	52661474	52661570	ENSG00000165416.14|SUGT1|pc|chr13:52661474:52661570:+	0	+
#Partially deleted in new
chr13	52687733	52700909	ENSG00000165416.14|SUGT1|pc|chr13:52687733:52700909:+	0	+
#Deleted in new
chr1	35276	35481	ENSG00000237613.2|FAM138A|lncRNA|chr1:35276:35481:-	0	-
#Partially deleted in new
chr1	35295926	35295988	ENSG00000146463.11|ZMYM4|pc|chr1:35295926:35295988:+	0	+
#Deleted in new
chr13	53151703	53151808	ENSG00000237092.1|LINC01065|lncRNA|chr13:53151703:53151808:-	0	-
#Deleted in new
chr13	53345210	53345958	ENSG00000273919.1|AL450423.1|lncRNA|chr13:53345210:53345958:+	0	+
#Deleted in new
chr13	53390425	53390653	ENSG00000273919.1|AL450423.1|lncRNA|chr13:53390425:53390653:+	0	+
#Deleted in new
chr13	53815418	53815493	ENSG00000261517.1|LINC00558|lncRNA|chr13:53815418:53815493:+	0	+
#Deleted in new
chr13	53838738	53838789	ENSG00000261517.1|LINC00558|lncRNA|chr13:53838738:53838789:+	0	+
#Deleted in new
chr13	53840682	53840810	ENSG00000261517.1|LINC00558|lncRNA|chr13:53840682:53840810:+	0	+
#Partially deleted in new
chr13	53873451	53876119	ENSG00000261517.1|LINC00558|lncRNA|chr13:53873451:53876119:+	0	+
#Deleted in new
chr1	35397051	35397123	ENSG00000146463.11|ZMYM4|pc|chr1:35397051:35397123:+	0	+
#Deleted in new
chr13	54120939	54121044	ENSG00000234787.7|LINC00458|lncRNA|chr13:54120939:54121044:-	0	-
#Partially deleted in new
chr13	54124323	54124755	ENSG00000234787.7|LINC00458|lncRNA|chr13:54124323:54124755:-	0	-
#Deleted in new
chr13	54124812	54125272	ENSG00000234787.7|LINC00458|lncRNA|chr13:54124812:54125272:-	0	-
#Deleted in new
chr13	54124994	54125272	ENSG00000234787.7|LINC00458|lncRNA|chr13:54124994:54125272:-	0	-
#Deleted in new
chr13	54125148	54125272	ENSG00000234787.7|LINC00458|lncRNA|chr13:54125148:54125272:-	0	-
#Deleted in new
chr13	54130873	54131071	ENSG00000234787.7|LINC00458|lncRNA|chr13:54130873:54131071:-	0	-
#Deleted in new
chr13	54132612	54132819	ENSG00000234787.7|LINC00458|lncRNA|chr13:54132612:54132819:-	0	-
#Deleted in new
chr13	54132612	54132851	ENSG00000234787.7|LINC00458|lncRNA|chr13:54132612:54132851:-	0	-
#Deleted in new
chr13	54132612	54132862	ENSG00000234787.7|LINC00458|lncRNA|chr13:54132612:54132862:-	0	-
#Deleted in new
chr13	54132612	54132866	ENSG00000234787.7|LINC00458|lncRNA|chr13:54132612:54132866:-	0	-
#Partially deleted in new
chr1	35435303	35435597	ENSG00000142687.17|KIAA0319L|pc|chr1:35435303:35435597:-	0	-
#Partially deleted in new
chr1	35438541	35441138	ENSG00000142687.17|KIAA0319L|pc|chr1:35438541:35441138:-	0	-
#Deleted in new
chr1	35443261	35443335	ENSG00000142687.17|KIAA0319L|pc|chr1:35443261:35443335:-	0	-
#Deleted in new
chr13	54940842	54940880	ENSG00000277047.4|AL390964.1|lncRNA|chr13:54940842:54940880:+	0	+
#Deleted in new
chr13	54941894	54942055	ENSG00000277047.4|AL390964.1|lncRNA|chr13:54941894:54942055:+	0	+
#Deleted in new
chr13	54941967	54942055	ENSG00000277047.4|AL390964.1|lncRNA|chr13:54941967:54942055:+	0	+
#Deleted in new
chr13	54952300	54952393	ENSG00000277047.4|AL390964.1|lncRNA|chr13:54952300:54952393:+	0	+
#Deleted in new
chr13	54979309	54979391	ENSG00000277047.4|AL390964.1|lncRNA|chr13:54979309:54979391:+	0	+
#Deleted in new
chr13	54986219	54986311	ENSG00000277047.4|AL390964.1|lncRNA|chr13:54986219:54986311:+	0	+
#Deleted in new
chr13	54986219	54986719	ENSG00000277047.4|AL390964.1|lncRNA|chr13:54986219:54986719:+	0	+
#Deleted in new
chr13	55062944	55063002	ENSG00000278630.1|LINC02335|lncRNA|chr13:55062944:55063002:+	0	+
#Deleted in new
chr13	55106769	55106836	ENSG00000278630.1|LINC02335|lncRNA|chr13:55106769:55106836:+	0	+
#Deleted in new
chr13	55535696	55536346	ENSG00000274090.1|AL354821.1|lncRNA|chr13:55535696:55536346:-	0	-
#Deleted in new
chr13	55583489	55583524	ENSG00000274090.1|AL354821.1|lncRNA|chr13:55583489:55583524:-	0	-
#Deleted in new
chr1	35631435	35631537	ENSG00000126067.11|PSMB2|pc|chr1:35631435:35631537:-	0	-
#Deleted in new
chr13	57140917	57141131	ENSG00000204919.1|PRR20A|pc|chr13:57140917:57141131:+	0	+
#Deleted in new
chr13	57140917	57141131	ENSG00000229665.8|PRR20C|pc|chr13:57140917:57141131:+	0	+
#Deleted in new
chr13	57141285	57141356	ENSG00000204919.1|PRR20A|pc|chr13:57141285:57141356:+	0	+
#Deleted in new
chr13	57147487	57147701	ENSG00000204918.3|PRR20B|pc|chr13:57147487:57147701:+	0	+
#Deleted in new
chr13	57147855	57147926	ENSG00000204918.3|PRR20B|pc|chr13:57147855:57147926:+	0	+
#Partially deleted in new
chr13	57148947	57150509	ENSG00000204918.3|PRR20B|pc|chr13:57148947:57150509:+	0	+
#Deleted in new
chr13	57154060	57154274	ENSG00000229665.8|PRR20C|pc|chr13:57154060:57154274:+	0	+
#Deleted in new
chr13	57154428	57154499	ENSG00000229665.8|PRR20C|pc|chr13:57154428:57154499:+	0	+
#Partially deleted in new
chr13	57155520	57157082	ENSG00000229665.8|PRR20C|pc|chr13:57155520:57157082:+	0	+
#Deleted in new
chr13	57160631	57160845	ENSG00000227151.4|PRR20D|pc|chr13:57160631:57160845:+	0	+
#Deleted in new
chr13	57160999	57161070	ENSG00000227151.4|PRR20D|pc|chr13:57160999:57161070:+	0	+
#Partially deleted in new
chr13	57162091	57163653	ENSG00000227151.4|PRR20D|pc|chr13:57162091:57163653:+	0	+
#Deleted in new
chr13	57167196	57167410	ENSG00000234278.3|PRR20E|pc|chr13:57167196:57167410:+	0	+
#Deleted in new
chr13	57167564	57167635	ENSG00000234278.3|PRR20E|pc|chr13:57167564:57167635:+	0	+
#Partially deleted in new
chr13	57168656	57170218	ENSG00000234278.3|PRR20E|pc|chr13:57168656:57170218:+	0	+
#Deleted in new
chr1	35720217	35720980	ENSG00000092853.13|CLSPN|pc|chr1:35720217:35720980:-	0	-
#Deleted in new
chr13	58206258	58206388	ENSG00000277448.1|LINC02338|lncRNA|chr13:58206258:58206388:+	0	+
#Deleted in new
chr13	58206941	58209483	ENSG00000277448.1|LINC02338|lncRNA|chr13:58206941:58209483:+	0	+
#Deleted in new
chr13	58211696	58211827	ENSG00000232954.2|LINC00374|lncRNA|chr13:58211696:58211827:-	0	-
#Deleted in new
chr13	58215625	58215683	ENSG00000232954.2|LINC00374|lncRNA|chr13:58215625:58215683:-	0	-
#Deleted in new
chr13	58221136	58221268	ENSG00000232954.2|LINC00374|lncRNA|chr13:58221136:58221268:-	0	-
#Deleted in new
chr13	58221865	58221928	ENSG00000232954.2|LINC00374|lncRNA|chr13:58221865:58221928:-	0	-
#Deleted in new
chr13	58232834	58233117	ENSG00000232954.2|LINC00374|lncRNA|chr13:58232834:58233117:-	0	-
#Deleted in new
chr1	35869807	35869903	ENSG00000092847.11|AGO1|pc|chr1:35869807:35869903:+	0	+
#Deleted in new
chr1	358856	358929	ENSG00000236601.2|AL732372.1|lncRNA|chr1:358856:358929:+	0	+
#Deleted in new
chr1	358871	358957	ENSG00000236601.2|AL732372.1|lncRNA|chr1:358871:358957:+	0	+
#Deleted in new
chr1	35992108	35992308	ENSG00000271554.1|AL138787.2|lncRNA|chr1:35992108:35992308:-	0	-
#Deleted in new
chr13	60147254	60147345	ENSG00000223815.1|DIAPH3-AS2|lncRNA|chr13:60147254:60147345:+	0	+
#Deleted in new
chr13	60153395	60153505	ENSG00000223815.1|DIAPH3-AS2|lncRNA|chr13:60153395:60153505:+	0	+
#Deleted in new
chr13	60396987	60397010	ENSG00000083544.13|TDRD3|pc|chr13:60396987:60397010:+	0	+
#Partially deleted in new
chr13	60434046	60434085	ENSG00000083544.13|TDRD3|pc|chr13:60434046:60434085:+	0	+
#Partially deleted in new
chr13	60434048	60434085	ENSG00000083544.13|TDRD3|pc|chr13:60434048:60434085:+	0	+
#Partially deleted in new
chr13	60940406	60941768	ENSG00000227510.3|LINC01442|lncRNA|chr13:60940406:60941768:+	0	+
#Deleted in new
chr13	61427492	61427849	ENSG00000197991.11|AL592490.1|pc|chr13:61427492:61427849:-	0	-
#Deleted in new
chr13	61427492	61427946	ENSG00000279797.1|LINC02339|lncRNA|chr13:61427492:61427946:-	0	-
#Deleted in new
chr1	36177468	36177574	ENSG00000116871.15|MAP7D1|pc|chr1:36177468:36177574:+	0	+
#Deleted in new
chr13	62003524	62004510	ENSG00000229578.2|LINC00358|lncRNA|chr13:62003524:62004510:-	0	-
#Deleted in new
chr13	62212576	62212629	ENSG00000230142.2|LINC01075|lncRNA|chr13:62212576:62212629:+	0	+
#Deleted in new
chr13	62249826	62249947	ENSG00000230142.2|LINC01075|lncRNA|chr13:62249826:62249947:+	0	+
#Deleted in new
chr1	3623189	3623556	ENSG00000238260.1|AL513320.1|lncRNA|chr1:3623189:3623556:-	0	-
#Deleted in new
chr13	62328755	62328833	ENSG00000229307.1|LINC00459|lncRNA|chr13:62328755:62328833:+	0	+
#Deleted in new
chr1	3624307	3624450	ENSG00000238260.1|AL513320.1|lncRNA|chr1:3624307:3624450:-	0	-
#Deleted in new
chr13	62672284	62672458	ENSG00000228669.1|LINC00448|lncRNA|chr13:62672284:62672458:-	0	-
#Deleted in new
chr13	62686004	62686094	ENSG00000228669.1|LINC00448|lncRNA|chr13:62686004:62686094:-	0	-
#Deleted in new
chr13	62700615	62700697	ENSG00000228669.1|LINC00448|lncRNA|chr13:62700615:62700697:-	0	-
#Partially deleted in new
chr13	62731859	62732195	ENSG00000228669.1|LINC00448|lncRNA|chr13:62731859:62732195:-	0	-
#Deleted in new
chr13	63034991	63035032	ENSG00000273550.1|AL354810.1|lncRNA|chr13:63034991:63035032:+	0	+
#Deleted in new
chr13	63052272	63052408	ENSG00000273550.1|AL354810.1|lncRNA|chr13:63052272:63052408:+	0	+
#Deleted in new
chr13	63097339	63097797	ENSG00000273550.1|AL354810.1|lncRNA|chr13:63097339:63097797:+	0	+
#Deleted in new
chr13	63183100	63183328	ENSG00000227564.2|LINC00376|lncRNA|chr13:63183100:63183328:-	0	-
#Deleted in new
chr13	63194489	63194531	ENSG00000227564.2|LINC00376|lncRNA|chr13:63194489:63194531:-	0	-
#Deleted in new
chr13	63226978	63227068	ENSG00000227564.2|LINC00376|lncRNA|chr13:63226978:63227068:-	0	-
#Deleted in new
chr13	63232012	63232131	ENSG00000227564.2|LINC00376|lncRNA|chr13:63232012:63232131:-	0	-
#Deleted in new
chr13	63264210	63264275	ENSG00000227564.2|LINC00376|lncRNA|chr13:63264210:63264275:-	0	-
#Partially deleted in new
chr1	3632765	3633503	ENSG00000116213.15|WRAP73|pc|chr1:3632765:3633503:-	0	-
#Deleted in new
chr13	63327247	63327355	ENSG00000227564.2|LINC00376|lncRNA|chr13:63327247:63327355:-	0	-
#Deleted in new
chr13	63328053	63328094	ENSG00000227564.2|LINC00376|lncRNA|chr13:63328053:63328094:-	0	-
#Deleted in new
chr1	36362558	36362656	ENSG00000196182.10|STK40|pc|chr1:36362558:36362656:-	0	-
#Deleted in new
chr13	63667680	63667839	ENSG00000231061.1|LINC00395|lncRNA|chr13:63667680:63667839:-	0	-
#Deleted in new
chr13	63667681	63667833	ENSG00000231061.1|LINC00395|lncRNA|chr13:63667681:63667833:-	0	-
#Deleted in new
chr13	63687401	63687555	ENSG00000231061.1|LINC00395|lncRNA|chr13:63687401:63687555:-	0	-
#Deleted in new
chr13	63714351	63714375	ENSG00000231061.1|LINC00395|lncRNA|chr13:63714351:63714375:-	0	-
#Deleted in new
chr13	63716949	63717018	ENSG00000231061.1|LINC00395|lncRNA|chr13:63716949:63717018:-	0	-
#Deleted in new
chr1	36372648	36372774	ENSG00000196182.10|STK40|pc|chr1:36372648:36372774:-	0	-
#Deleted in new
chr13	63737908	63738018	ENSG00000231061.1|LINC00395|lncRNA|chr13:63737908:63738018:-	0	-
#Deleted in new
chr13	63747998	63748397	ENSG00000237378.2|AL445989.1|lncRNA|chr13:63747998:63748397:+	0	+
#Deleted in new
chr13	63750703	63751080	ENSG00000237378.2|AL445989.1|lncRNA|chr13:63750703:63751080:+	0	+
#Partially deleted in new
chr1	3638749	3639625	ENSG00000116213.15|WRAP73|pc|chr1:3638749:3639625:-	0	-
#Deleted in new
chr1	36391237	36391604	ENSG00000181817.5|LSM10|pc|chr1:36391237:36391604:-	0	-
#Deleted in new
chr1	36392357	36392487	ENSG00000181817.5|LSM10|pc|chr1:36392357:36392487:-	0	-
#Deleted in new
chr1	36397617	36397878	ENSG00000181817.5|LSM10|pc|chr1:36397617:36397878:-	0	-
#Deleted in new
chr1	36397766	36397887	ENSG00000181817.5|LSM10|pc|chr1:36397766:36397887:-	0	-
#Deleted in new
chr1	36397766	36397892	ENSG00000181817.5|LSM10|pc|chr1:36397766:36397892:-	0	-
#Deleted in new
chr13	63986370	63987039	ENSG00000227674.1|LINC00355|lncRNA|chr13:63986370:63987039:-	0	-
#Deleted in new
chr13	64002384	64002409	ENSG00000227674.1|LINC00355|lncRNA|chr13:64002384:64002409:-	0	-
#Deleted in new
chr13	64003347	64003465	ENSG00000227674.1|LINC00355|lncRNA|chr13:64003347:64003465:-	0	-
#Deleted in new
chr13	64075241	64076011	ENSG00000227674.1|LINC00355|lncRNA|chr13:64075241:64076011:-	0	-
#Partially deleted in new
chr1	36457922	36459126	ENSG00000116898.11|MRPS15|pc|chr1:36457922:36459126:-	0	-
#Partially deleted in new
chr1	36457922	36459703	ENSG00000116898.11|MRPS15|pc|chr1:36457922:36459703:-	0	-
#Deleted in new
chr1	36476982	36477677	ENSG00000119535.17|CSF3R|pc|chr1:36476982:36477677:-	0	-
#Partially deleted in new
chr1	36478913	36479516	ENSG00000119535.17|CSF3R|pc|chr1:36478913:36479516:-	0	-
#Deleted in new
chr1	36479986	36480080	ENSG00000119535.17|CSF3R|pc|chr1:36479986:36480080:-	0	-
#Deleted in new
chr1	365170	365510	ENSG00000236601.2|AL732372.1|lncRNA|chr1:365170:365510:+	0	+
#Deleted in new
chr1	365170	365704	ENSG00000236601.2|AL732372.1|lncRNA|chr1:365170:365704:+	0	+
#Deleted in new
chr1	365170	366052	ENSG00000236601.2|AL732372.1|lncRNA|chr1:365170:366052:+	0	+
#Deleted in new
chr1	3658937	3659430	ENSG00000227589.1|AL136528.1|lncRNA|chr1:3658937:3659430:-	0	-
#Deleted in new
chr1	3662152	3662265	ENSG00000227589.1|AL136528.1|lncRNA|chr1:3662152:3662265:-	0	-
#Deleted in new
chr13	66306175	66306309	ENSG00000184226.14|PCDH9|pc|chr13:66306175:66306309:-	0	-
#Deleted in new
chr13	66825168	66825236	ENSG00000228842.3|PCDH9-AS2|lncRNA|chr13:66825168:66825236:+	0	+
#Deleted in new
chr13	66880034	66880171	ENSG00000228842.3|PCDH9-AS2|lncRNA|chr13:66880034:66880171:+	0	+
#Deleted in new
chr13	66914397	66914486	ENSG00000228842.3|PCDH9-AS2|lncRNA|chr13:66914397:66914486:+	0	+
#Deleted in new
chr13	66996221	66996281	ENSG00000233840.1|PCDH9-AS4|lncRNA|chr13:66996221:66996281:+	0	+
#Deleted in new
chr13	67379550	67379976	ENSG00000230040.1|LINC00364|lncRNA|chr13:67379550:67379976:+	0	+
#Deleted in new
chr13	68861283	68864416	ENSG00000281778.1|LINC00550|lncRNA|chr13:68861283:68864416:-	0	-
#Deleted in new
chr13	68870062	68870214	ENSG00000281778.1|LINC00550|lncRNA|chr13:68870062:68870214:-	0	-
#Deleted in new
chr13	68870928	68871108	ENSG00000281778.1|LINC00550|lncRNA|chr13:68870928:68871108:-	0	-
#Deleted in new
chr13	68878379	68878468	ENSG00000280580.1|LINC02342|lncRNA|chr13:68878379:68878468:+	0	+
#Deleted in new
chr13	68885052	68885217	ENSG00000280580.1|LINC02342|lncRNA|chr13:68885052:68885217:+	0	+
#Deleted in new
chr13	68885176	68885313	ENSG00000281778.1|LINC00550|lncRNA|chr13:68885176:68885313:-	0	-
#Deleted in new
chr13	68885176	68885325	ENSG00000281778.1|LINC00550|lncRNA|chr13:68885176:68885325:-	0	-
#Deleted in new
chr13	68888716	68888766	ENSG00000280580.1|LINC02342|lncRNA|chr13:68888716:68888766:+	0	+
#Deleted in new
chr13	68889267	68889350	ENSG00000280580.1|LINC02342|lncRNA|chr13:68889267:68889350:+	0	+
#Deleted in new
chr13	68890496	68890560	ENSG00000280580.1|LINC02342|lncRNA|chr13:68890496:68890560:+	0	+
#Deleted in new
chr13	68893563	68893573	ENSG00000280580.1|LINC02342|lncRNA|chr13:68893563:68893573:+	0	+
#Deleted in new
chr13	69222345	69222448	ENSG00000237534.1|LINC00383|lncRNA|chr13:69222345:69222448:+	0	+
#Deleted in new
chr13	69269890	69269951	ENSG00000237534.1|LINC00383|lncRNA|chr13:69269890:69269951:+	0	+
#Deleted in new
chr13	69275139	69275264	ENSG00000237534.1|LINC00383|lncRNA|chr13:69275139:69275264:+	0	+
#Deleted in new
chr13	69291626	69292154	ENSG00000237534.1|LINC00383|lncRNA|chr13:69291626:69292154:+	0	+
#Deleted in new
chr13	69311332	69311396	ENSG00000235221.1|AL355478.1|lncRNA|chr13:69311332:69311396:+	0	+
#Partially deleted in new
chr13	69321344	69322101	ENSG00000235221.1|AL355478.1|lncRNA|chr13:69321344:69322101:+	0	+
#Deleted in new
chr1	3698045	3698151	ENSG00000078900.14|TP73|pc|chr1:3698045:3698151:+	0	+
#Deleted in new
chr1	3698057	3698151	ENSG00000078900.14|TP73|pc|chr1:3698057:3698151:+	0	+
#Deleted in new
chr13	70129783	70129884	ENSG00000230223.6|ATXN8OS|lncRNA|chr13:70129783:70129884:+	0	+
#Deleted in new
chr13	70130677	70130848	ENSG00000230223.6|ATXN8OS|lncRNA|chr13:70130677:70130848:+	0	+
#Partially deleted in new
chr13	70130677	70131546	ENSG00000230223.6|ATXN8OS|lncRNA|chr13:70130677:70131546:+	0	+
#Deleted in new
chr13	70139240	70139429	ENSG00000230223.6|ATXN8OS|lncRNA|chr13:70139240:70139429:+	0	+
#Deleted in new
chr13	71015140	71015248	ENSG00000226846.1|LINC00348|lncRNA|chr13:71015140:71015248:+	0	+
#Deleted in new
chr13	71143185	71143236	ENSG00000226846.1|LINC00348|lncRNA|chr13:71143185:71143236:+	0	+
#Partially deleted in new
chr1	37135226	37136146	ENSG00000284650.1|AL031430.1|lncRNA|chr1:37135226:37136146:+	0	+
#Partially deleted in new
chr1	3714186	3714298	ENSG00000235131.1|AL136528.2|lncRNA|chr1:3714186:3714298:-	0	-
#Deleted in new
chr13	72884443	72884671	ENSG00000083535.15|PIBF1|pc|chr13:72884443:72884671:+	0	+
#Deleted in new
chr13	72969602	72969626	ENSG00000083535.15|PIBF1|pc|chr13:72969602:72969626:+	0	+
#Deleted in new
chr13	72969638	72969753	ENSG00000083535.15|PIBF1|pc|chr13:72969638:72969753:+	0	+
#Deleted in new
chr13	73075014	73075073	ENSG00000102554.13|KLF5|pc|chr13:73075014:73075073:+	0	+
#Deleted in new
chr13	73587338	73587445	ENSG00000228295.1|LINC00392|lncRNA|chr13:73587338:73587445:+	0	+
#Deleted in new
chr13	73587679	73588070	ENSG00000228295.1|LINC00392|lncRNA|chr13:73587679:73588070:+	0	+
#Deleted in new
chr13	73648222	73648253	ENSG00000224853.1|LINC00393|lncRNA|chr13:73648222:73648253:-	0	-
#Deleted in new
chr13	74231456	74231752	ENSG00000235532.1|LINC00402|lncRNA|chr13:74231456:74231752:+	0	+
#Partially deleted in new
chr13	74412956	74414940	ENSG00000177596.1|AL355390.1|lncRNA|chr13:74412956:74414940:-	0	-
#Deleted in new
chr13	74419442	74419539	ENSG00000226240.1|LINC00381|lncRNA|chr13:74419442:74419539:+	0	+
#Partially deleted in new
chr13	74426092	74426418	ENSG00000226240.1|LINC00381|lncRNA|chr13:74426092:74426418:+	0	+
#Deleted in new
chr13	74543839	74543901	ENSG00000281167.1|AL355390.2|lncRNA|chr13:74543839:74543901:+	0	+
#Deleted in new
chr13	74551179	74551232	ENSG00000281167.1|AL355390.2|lncRNA|chr13:74551179:74551232:+	0	+
#Deleted in new
chr13	74552502	74552903	ENSG00000236678.7|LINC00347|lncRNA|chr13:74552502:74552903:+	0	+
#Deleted in new
chr13	74552555	74552903	ENSG00000236678.7|LINC00347|lncRNA|chr13:74552555:74552903:+	0	+
#Deleted in new
chr13	74552743	74552903	ENSG00000281167.1|AL355390.2|lncRNA|chr13:74552743:74552903:+	0	+
#Deleted in new
chr13	74552842	74552903	ENSG00000236678.7|LINC00347|lncRNA|chr13:74552842:74552903:+	0	+
#Deleted in new
chr13	74553167	74553248	ENSG00000236678.7|LINC00347|lncRNA|chr13:74553167:74553248:+	0	+
#Deleted in new
chr13	74553167	74553248	ENSG00000281167.1|AL355390.2|lncRNA|chr13:74553167:74553248:+	0	+
#Deleted in new
chr1	3746459	3746691	ENSG00000162592.9|CCDC27|pc|chr1:3746459:3746691:+	0	+
#Deleted in new
chr1	3747813	3747958	ENSG00000162592.9|CCDC27|pc|chr1:3747813:3747958:+	0	+
#Deleted in new
chr1	3751331	3751457	ENSG00000162592.9|CCDC27|pc|chr1:3751331:3751457:+	0	+
#Partially deleted in new
chr13	75251747	75252012	ENSG00000223880.1|LINC01078|lncRNA|chr13:75251747:75252012:+	0	+
#Deleted in new
chr13	75302615	75302821	ENSG00000136111.12|TBC1D4|pc|chr13:75302615:75302821:-	0	-
#Deleted in new
chr1	37548820	37548987	ENSG00000163877.10|SNIP1|pc|chr1:37548820:37548987:-	0	-
#Deleted in new
chr13	75527812	75527851	ENSG00000188243.12|COMMD6|pc|chr13:75527812:75527851:-	0	-
#Deleted in new
chr13	75538752	75538802	ENSG00000188243.12|COMMD6|pc|chr13:75538752:75538802:-	0	-
#Deleted in new
chr13	75618769	75618906	ENSG00000261105.5|LMO7-AS1|lncRNA|chr13:75618769:75618906:-	0	-
#Deleted in new
chr13	75623269	75623320	ENSG00000136153.19|LMO7|pc|chr13:75623269:75623320:+	0	+
#Deleted in new
chr13	75623270	75623320	ENSG00000136153.19|LMO7|pc|chr13:75623270:75623320:+	0	+
#Deleted in new
chr13	75623270	75623320	ENSG00000261553.5|AL137782.1|lncRNA|chr13:75623270:75623320:+	0	+
#Deleted in new
chr1	37581341	37581545	ENSG00000134697.12|GNL2|pc|chr1:37581341:37581545:-	0	-
#Deleted in new
chr13	75873851	75873972	ENSG00000178734.5|LMO7DN|pc|chr13:75873851:75873972:+	0	+
#Deleted in new
chr13	75878714	75878794	ENSG00000223458.2|LMO7DN-IT1|lncRNA|chr13:75878714:75878794:+	0	+
#Deleted in new
chr13	75879703	75879782	ENSG00000223458.2|LMO7DN-IT1|lncRNA|chr13:75879703:75879782:+	0	+
#Partially deleted in new
chr13	75932394	75935132	ENSG00000261206.1|LINC00561|lncRNA|chr13:75932394:75935132:-	0	-
#Partially deleted in new
chr1	37692025	37692249	ENSG00000116922.14|C1orf109|pc|chr1:37692025:37692249:-	0	-
#Deleted in new
chr1	37692029	37692205	ENSG00000116922.14|C1orf109|pc|chr1:37692029:37692205:-	0	-
#Deleted in new
chr1	37692029	37692216	ENSG00000116922.14|C1orf109|pc|chr1:37692029:37692216:-	0	-
#Partially deleted in new
chr1	37692029	37692242	ENSG00000116922.14|C1orf109|pc|chr1:37692029:37692242:-	0	-
#Deleted in new
chr1	37692188	37692223	ENSG00000116922.14|C1orf109|pc|chr1:37692188:37692223:-	0	-
#Partially deleted in new
chr13	76990659	76992271	ENSG00000102805.14|CLN5|pc|chr13:76990659:76992271:+	0	+
#Partially deleted in new
chr13	76995901	76997863	ENSG00000102805.14|CLN5|pc|chr13:76995901:76997863:+	0	+
#Deleted in new
chr13	77000199	77000383	ENSG00000102805.14|CLN5|pc|chr13:77000199:77000383:+	0	+
#Deleted in new
chr13	77008601	77008895	ENSG00000283208.1|AC001226.2|pc|chr13:77008601:77008895:+	0	+
#Deleted in new
chr13	77008743	77008895	ENSG00000102805.14|CLN5|pc|chr13:77008743:77008895:+	0	+
#Partially deleted in new
chr13	77008743	77010968	ENSG00000102805.14|CLN5|pc|chr13:77008743:77010968:+	0	+
#Partially deleted in new
chr13	77016716	77018366	ENSG00000102805.14|CLN5|pc|chr13:77016716:77018366:+	0	+
#Deleted in new
chr13	77017049	77017177	ENSG00000102805.14|CLN5|pc|chr13:77017049:77017177:+	0	+
#Partially deleted in new
chr13	77027943	77028482	ENSG00000274898.1|AC001226.1|lncRNA|chr13:77027943:77028482:+	0	+
#Deleted in new
chr13	77075513	77075584	ENSG00000236051.7|MYCBP2-AS1|lncRNA|chr13:77075513:77075584:+	0	+
#Deleted in new
chr13	77075517	77075584	ENSG00000236051.7|MYCBP2-AS1|lncRNA|chr13:77075517:77075584:+	0	+
#Deleted in new
chr13	77075517	77075584	ENSG00000283208.1|AC001226.2|pc|chr13:77075517:77075584:+	0	+
#Partially deleted in new
chr13	77075517	77076198	ENSG00000283208.1|AC001226.2|pc|chr13:77075517:77076198:+	0	+
#Deleted in new
chr13	77075536	77075584	ENSG00000236051.7|MYCBP2-AS1|lncRNA|chr13:77075536:77075584:+	0	+
#Deleted in new
chr13	77075537	77075584	ENSG00000236051.7|MYCBP2-AS1|lncRNA|chr13:77075537:77075584:+	0	+
#Partially deleted in new
chr1	37708321	37709713	ENSG00000134690.10|CDCA8|pc|chr1:37708321:37709713:+	0	+
#Partially deleted in new
chr1	37708321	37709719	ENSG00000134690.10|CDCA8|pc|chr1:37708321:37709719:+	0	+
#Deleted in new
chr13	77109647	77110102	ENSG00000283208.1|AC001226.2|pc|chr13:77109647:77110102:+	0	+
#Deleted in new
chr1	37713879	37714097	ENSG00000183317.16|EPHA10|pc|chr1:37713879:37714097:-	0	-
#Deleted in new
chr1	37713885	37714097	ENSG00000183317.16|EPHA10|pc|chr1:37713885:37714097:-	0	-
#Deleted in new
chr1	37713887	37714023	ENSG00000183317.16|EPHA10|pc|chr1:37713887:37714023:-	0	-
#Deleted in new
chr1	37713892	37714023	ENSG00000183317.16|EPHA10|pc|chr1:37713892:37714023:-	0	-
#Deleted in new
chr1	37714730	37714890	ENSG00000183317.16|EPHA10|pc|chr1:37714730:37714890:-	0	-
#Deleted in new
chr1	37714730	37715020	ENSG00000183317.16|EPHA10|pc|chr1:37714730:37715020:-	0	-
#Deleted in new
chr1	37714853	37714890	ENSG00000183317.16|EPHA10|pc|chr1:37714853:37714890:-	0	-
#Partially deleted in new
chr1	37718952	37719053	ENSG00000183317.16|EPHA10|pc|chr1:37718952:37719053:-	0	-
#Deleted in new
chr13	77272322	77272399	ENSG00000005810.17|MYCBP2|pc|chr13:77272322:77272399:-	0	-
#Deleted in new
chr1	37734579	37734687	ENSG00000183317.16|EPHA10|pc|chr1:37734579:37734687:-	0	-
#Deleted in new
chr1	37756535	37756691	ENSG00000183317.16|EPHA10|pc|chr1:37756535:37756691:-	0	-
#Deleted in new
chr13	77828221	77828415	ENSG00000225579.1|EDNRB-AS1|lncRNA|chr13:77828221:77828415:+	0	+
#Deleted in new
chr13	77829027	77829102	ENSG00000225579.1|EDNRB-AS1|lncRNA|chr13:77829027:77829102:+	0	+
#Partially deleted in new
chr1	3778557	3781336	ENSG00000130764.9|LRRC47|pc|chr1:3778557:3781336:-	0	-
#Deleted in new
chr13	78012882	78012947	ENSG00000229249.6|LINC00446|lncRNA|chr13:78012882:78012947:+	0	+
#Partially deleted in new
chr13	78013674	78013763	ENSG00000229249.6|LINC00446|lncRNA|chr13:78013674:78013763:+	0	+
#Deleted in new
chr13	78037195	78037219	ENSG00000229249.6|LINC00446|lncRNA|chr13:78037195:78037219:+	0	+
#Deleted in new
chr13	78037195	78037250	ENSG00000229249.6|LINC00446|lncRNA|chr13:78037195:78037250:+	0	+
#Deleted in new
chr13	78054844	78055064	ENSG00000234377.7|RNF219-AS1|lncRNA|chr13:78054844:78055064:+	0	+
#Deleted in new
chr13	78054846	78055064	ENSG00000234377.7|RNF219-AS1|lncRNA|chr13:78054846:78055064:+	0	+
#Deleted in new
chr13	78054854	78055064	ENSG00000234377.7|RNF219-AS1|lncRNA|chr13:78054854:78055064:+	0	+
#Deleted in new
chr13	78054867	78055064	ENSG00000234377.7|RNF219-AS1|lncRNA|chr13:78054867:78055064:+	0	+
#Deleted in new
chr13	78054988	78055064	ENSG00000234377.7|RNF219-AS1|lncRNA|chr13:78054988:78055064:+	0	+
#Deleted in new
chr13	78054996	78055064	ENSG00000234377.7|RNF219-AS1|lncRNA|chr13:78054996:78055064:+	0	+
#Deleted in new
chr13	78055022	78055064	ENSG00000234377.7|RNF219-AS1|lncRNA|chr13:78055022:78055064:+	0	+
#Deleted in new
chr13	78055154	78055195	ENSG00000234377.7|RNF219-AS1|lncRNA|chr13:78055154:78055195:+	0	+
#Deleted in new
chr13	78275719	78275866	ENSG00000235625.1|AL138957.1|lncRNA|chr13:78275719:78275866:-	0	-
#Deleted in new
chr1	3783769	3783911	ENSG00000130764.9|LRRC47|pc|chr1:3783769:3783911:-	0	-
#Deleted in new
chr1	37861494	37861580	ENSG00000230955.1|AL929472.2|lncRNA|chr1:37861494:37861580:+	0	+
#Deleted in new
chr13	79415110	79415364	ENSG00000227354.6|RBM26-AS1|lncRNA|chr13:79415110:79415364:+	0	+
#Deleted in new
chr13	79415261	79415364	ENSG00000227354.6|RBM26-AS1|lncRNA|chr13:79415261:79415364:+	0	+
#Deleted in new
chr13	79417834	79417866	ENSG00000227354.6|RBM26-AS1|lncRNA|chr13:79417834:79417866:+	0	+
#Deleted in new
chr13	79417834	79417916	ENSG00000227354.6|RBM26-AS1|lncRNA|chr13:79417834:79417916:+	0	+
#Deleted in new
chr13	79420759	79420815	ENSG00000227354.6|RBM26-AS1|lncRNA|chr13:79420759:79420815:+	0	+
#Deleted in new
chr1	37942082	37942264	ENSG00000204084.12|INPP5B|pc|chr1:37942082:37942264:-	0	-
#Deleted in new
chr13	79421986	79422214	ENSG00000227354.6|RBM26-AS1|lncRNA|chr13:79421986:79422214:+	0	+
#Deleted in new
chr13	79421986	79422717	ENSG00000227354.6|RBM26-AS1|lncRNA|chr13:79421986:79422717:+	0	+
#Deleted in new
chr13	79421986	79422955	ENSG00000227354.6|RBM26-AS1|lncRNA|chr13:79421986:79422955:+	0	+
#Partially deleted in new
chr13	79422726	79424328	ENSG00000227354.6|RBM26-AS1|lncRNA|chr13:79422726:79424328:+	0	+
#Deleted in new
chr13	79518991	79519169	ENSG00000102471.13|NDFIP2|pc|chr13:79518991:79519169:+	0	+
#Deleted in new
chr13	79566726	79566807	ENSG00000227676.3|LINC01068|lncRNA|chr13:79566726:79566807:+	0	+
#Deleted in new
chr13	79566745	79566807	ENSG00000227676.3|LINC01068|lncRNA|chr13:79566745:79566807:+	0	+
#Deleted in new
chr13	79872585	79872696	ENSG00000229175.1|LINC00382|lncRNA|chr13:79872585:79872696:+	0	+
#Deleted in new
chr13	80041724	80042716	ENSG00000284196.1|AL158064.2|lncRNA|chr13:80041724:80042716:-	0	-
#Deleted in new
chr13	80041743	80042743	ENSG00000284196.1|AL158064.2|lncRNA|chr13:80041743:80042743:-	0	-
#Deleted in new
chr13	80041748	80042716	ENSG00000284196.1|AL158064.2|lncRNA|chr13:80041748:80042716:-	0	-
#Partially deleted in new
chr13	80058571	80058836	ENSG00000284196.1|AL158064.2|lncRNA|chr13:80058571:80058836:-	0	-
#Deleted in new
chr13	80058683	80058836	ENSG00000284196.1|AL158064.2|lncRNA|chr13:80058683:80058836:-	0	-
#Deleted in new
chr13	80060411	80060548	ENSG00000284196.1|AL158064.2|lncRNA|chr13:80060411:80060548:-	0	-
#Deleted in new
chr13	80061926	80064976	ENSG00000284196.1|AL158064.2|lncRNA|chr13:80061926:80064976:-	0	-
#Deleted in new
chr13	80065948	80066479	ENSG00000284196.1|AL158064.2|lncRNA|chr13:80065948:80066479:-	0	-
#Deleted in new
chr13	80074478	80074528	ENSG00000284196.1|AL158064.2|lncRNA|chr13:80074478:80074528:-	0	-
#Deleted in new
chr13	80074478	80074531	ENSG00000284196.1|AL158064.2|lncRNA|chr13:80074478:80074531:-	0	-
#Deleted in new
chr13	80074478	80074557	ENSG00000284196.1|AL158064.2|lncRNA|chr13:80074478:80074557:-	0	-
#Deleted in new
chr13	81043669	81043850	ENSG00000229246.1|LINC00377|lncRNA|chr13:81043669:81043850:+	0	+
#Deleted in new
chr13	81043966	81044442	ENSG00000229246.1|LINC00377|lncRNA|chr13:81043966:81044442:+	0	+
#Deleted in new
chr1	38105631	38105734	ENSG00000224592.5|AL139158.2|lncRNA|chr1:38105631:38105734:+	0	+
#Deleted in new
chr1	38105631	38105752	ENSG00000224592.5|AL139158.2|lncRNA|chr1:38105631:38105752:+	0	+
#Deleted in new
chr1	38118959	38119025	ENSG00000224592.5|AL139158.2|lncRNA|chr1:38118959:38119025:+	0	+
#Partially deleted in new
chr1	3812080	3815517	ENSG00000116198.12|CEP104|pc|chr1:3812080:3815517:-	0	-
#Deleted in new
chr13	81225864	81226983	ENSG00000260094.1|LINC00564|lncRNA|chr13:81225864:81226983:-	0	-
#Deleted in new
chr13	81250437	81250485	ENSG00000229309.2|AL353633.1|lncRNA|chr13:81250437:81250485:+	0	+
#Deleted in new
chr13	81279796	81279845	ENSG00000229309.2|AL353633.1|lncRNA|chr13:81279796:81279845:+	0	+
#Deleted in new
chr13	81298608	81298650	ENSG00000229309.2|AL353633.1|lncRNA|chr13:81298608:81298650:+	0	+
#Deleted in new
chr13	81299188	81299272	ENSG00000229309.2|AL353633.1|lncRNA|chr13:81299188:81299272:+	0	+
#Deleted in new
chr1	38214716	38214767	ENSG00000237290.1|LINC01343|lncRNA|chr1:38214716:38214767:-	0	-
#Partially deleted in new
chr1	3822775	3823241	ENSG00000116198.12|CEP104|pc|chr1:3822775:3823241:-	0	-
#Deleted in new
chr1	3826707	3826744	ENSG00000116198.12|CEP104|pc|chr1:3826707:3826744:-	0	-
#Deleted in new
chr1	3836914	3837136	ENSG00000116198.12|CEP104|pc|chr1:3836914:3837136:-	0	-
#Deleted in new
chr1	3843108	3843323	ENSG00000116198.12|CEP104|pc|chr1:3843108:3843323:-	0	-
#Deleted in new
chr13	84562363	84562463	ENSG00000233349.1|LINC00333|lncRNA|chr13:84562363:84562463:+	0	+
#Deleted in new
chr13	84562608	84562676	ENSG00000233349.1|LINC00333|lncRNA|chr13:84562608:84562676:+	0	+
#Deleted in new
chr13	84562791	84563236	ENSG00000233349.1|LINC00333|lncRNA|chr13:84562791:84563236:+	0	+
#Deleted in new
chr1	38493570	38493621	ENSG00000238063.2|LINC01685|lncRNA|chr1:38493570:38493621:+	0	+
#Deleted in new
chr13	85078761	85078920	ENSG00000226370.1|LINC00375|lncRNA|chr13:85078761:85078920:-	0	-
#Deleted in new
chr13	85363600	85364095	ENSG00000226317.2|LINC00351|lncRNA|chr13:85363600:85364095:+	0	+
#Deleted in new
chr1	3860419	3860490	ENSG00000169598.15|DFFB|pc|chr1:3860419:3860490:+	0	+
#Deleted in new
chr1	3860419	3860506	ENSG00000169598.15|DFFB|pc|chr1:3860419:3860506:+	0	+
#Deleted in new
chr13	86060812	86060860	ENSG00000232252.1|AL354994.1|lncRNA|chr13:86060812:86060860:+	0	+
#Deleted in new
chr13	86072826	86072926	ENSG00000232252.1|AL354994.1|lncRNA|chr13:86072826:86072926:+	0	+
#Deleted in new
chr13	86170844	86170890	ENSG00000232252.1|AL354994.1|lncRNA|chr13:86170844:86170890:+	0	+
#Deleted in new
chr1	3866283	3866398	ENSG00000169598.15|DFFB|pc|chr1:3866283:3866398:+	0	+
#Deleted in new
chr13	86909585	86909615	ENSG00000233528.4|LINC00430|lncRNA|chr13:86909585:86909615:+	0	+
#Deleted in new
chr13	86911917	86911981	ENSG00000233528.4|LINC00430|lncRNA|chr13:86911917:86911981:+	0	+
#Deleted in new
chr13	86911919	86911981	ENSG00000233528.4|LINC00430|lncRNA|chr13:86911919:86911981:+	0	+
#Deleted in new
chr13	86935621	86935770	ENSG00000233528.4|LINC00430|lncRNA|chr13:86935621:86935770:+	0	+
#Deleted in new
chr13	86936575	86936612	ENSG00000233528.4|LINC00430|lncRNA|chr13:86936575:86936612:+	0	+
#Deleted in new
chr13	86936575	86937108	ENSG00000233528.4|LINC00430|lncRNA|chr13:86936575:86937108:+	0	+
#Deleted in new
chr1	3873013	3873137	ENSG00000169598.15|DFFB|pc|chr1:3873013:3873137:+	0	+
#Deleted in new
chr13	87443986	87445130	ENSG00000228824.6|MIR4500HG|lncRNA|chr13:87443986:87445130:-	0	-
#Deleted in new
chr13	87445010	87445130	ENSG00000232636.2|AL360267.1|lncRNA|chr13:87445010:87445130:-	0	-
#Deleted in new
chr13	87447095	87447233	ENSG00000228824.6|MIR4500HG|lncRNA|chr13:87447095:87447233:-	0	-
#Deleted in new
chr13	87447095	87447235	ENSG00000232636.2|AL360267.1|lncRNA|chr13:87447095:87447235:-	0	-
#Deleted in new
chr13	87473439	87473553	ENSG00000228824.6|MIR4500HG|lncRNA|chr13:87473439:87473553:-	0	-
#Deleted in new
chr1	38754215	38754623	ENSG00000284632.1|AL354702.2|lncRNA|chr1:38754215:38754623:-	0	-
#Deleted in new
chr13	87584857	87585080	ENSG00000228824.6|MIR4500HG|lncRNA|chr13:87584857:87585080:-	0	-
#Deleted in new
chr13	87607906	87609234	ENSG00000272515.1|AL355578.1|lncRNA|chr13:87607906:87609234:-	0	-
#Deleted in new
chr13	87612272	87612484	ENSG00000228824.6|MIR4500HG|lncRNA|chr13:87612272:87612484:-	0	-
#Deleted in new
chr13	87615562	87615755	ENSG00000228824.6|MIR4500HG|lncRNA|chr13:87615562:87615755:-	0	-
#Deleted in new
chr13	87615591	87615755	ENSG00000228824.6|MIR4500HG|lncRNA|chr13:87615591:87615755:-	0	-
#Deleted in new
chr13	87619262	87619393	ENSG00000228824.6|MIR4500HG|lncRNA|chr13:87619262:87619393:-	0	-
#Deleted in new
chr1	38774476	38774508	ENSG00000284632.1|AL354702.2|lncRNA|chr1:38774476:38774508:-	0	-
#Deleted in new
chr13	87801225	87801279	ENSG00000223404.3|LINC00397|lncRNA|chr13:87801225:87801279:-	0	-
#Deleted in new
chr13	87803009	87803074	ENSG00000223404.3|LINC00397|lncRNA|chr13:87803009:87803074:-	0	-
#Deleted in new
chr13	87803009	87803364	ENSG00000223404.3|LINC00397|lncRNA|chr13:87803009:87803364:-	0	-
#Deleted in new
chr13	87803773	87803808	ENSG00000223404.3|LINC00397|lncRNA|chr13:87803773:87803808:-	0	-
#Deleted in new
chr13	88212340	88212439	ENSG00000231019.1|AL354896.1|lncRNA|chr13:88212340:88212439:+	0	+
#Deleted in new
chr13	88234322	88234418	ENSG00000231019.1|AL354896.1|lncRNA|chr13:88234322:88234418:+	0	+
#Deleted in new
chr13	88236002	88236082	ENSG00000231019.1|AL354896.1|lncRNA|chr13:88236002:88236082:+	0	+
#Deleted in new
chr13	88540863	88541443	ENSG00000229443.1|LINC00433|lncRNA|chr13:88540863:88541443:+	0	+
#Deleted in new
chr13	88545342	88545509	ENSG00000229443.1|LINC00433|lncRNA|chr13:88545342:88545509:+	0	+
#Split in new
chr1	38873594	38876193	ENSG00000274944.4|AL139260.3|pc|chr1:38873594:38876193:-	0	-
#Deleted in new
chr1	38874151	38874494	ENSG00000273637.1|AL139260.2|lncRNA|chr1:38874151:38874494:-	0	-
#Deleted in new
chr1	38881431	38881587	ENSG00000131233.9|GJA9|pc|chr1:38881431:38881587:-	0	-
#Deleted in new
chr1	38881431	38881597	ENSG00000274944.4|AL139260.3|pc|chr1:38881431:38881597:-	0	-
#Deleted in new
chr1	38881431	38881602	ENSG00000274944.4|AL139260.3|pc|chr1:38881431:38881602:-	0	-
#Deleted in new
chr1	38881431	38881617	ENSG00000274944.4|AL139260.3|pc|chr1:38881431:38881617:-	0	-
#Split in new
chr1	3889124	3890073	ENSG00000198912.10|C1orf174|pc|chr1:3889124:3890073:-	0	-
#Deleted in new
chr1	38913539	38913628	ENSG00000228436.2|AL139260.1|lncRNA|chr1:38913539:38913628:+	0	+
#Deleted in new
chr13	89214846	89215327	ENSG00000232225.6|LINC01047|lncRNA|chr13:89214846:89215327:-	0	-
#Deleted in new
chr13	89214895	89215327	ENSG00000232225.6|LINC01047|lncRNA|chr13:89214895:89215327:-	0	-
#Deleted in new
chr13	89215973	89216141	ENSG00000232225.6|LINC01047|lncRNA|chr13:89215973:89216141:-	0	-
#Deleted in new
chr13	89219570	89219709	ENSG00000232225.6|LINC01047|lncRNA|chr13:89219570:89219709:-	0	-
#Deleted in new
chr13	89236818	89236890	ENSG00000232225.6|LINC01047|lncRNA|chr13:89236818:89236890:-	0	-
#Partially deleted in new
chr1	38925953	38926837	ENSG00000158315.10|RHBDL2|pc|chr1:38925953:38926837:-	0	-
#Deleted in new
chr13	89273202	89273362	ENSG00000234660.1|LINC00440|lncRNA|chr13:89273202:89273362:+	0	+
#Deleted in new
chr13	89279666	89280240	ENSG00000234660.1|LINC00440|lncRNA|chr13:89279666:89280240:+	0	+
#Deleted in new
chr13	89477607	89478137	ENSG00000226037.1|LINC01040|lncRNA|chr13:89477607:89478137:-	0	-
#Deleted in new
chr13	89500373	89500509	ENSG00000226037.1|LINC01040|lncRNA|chr13:89500373:89500509:-	0	-
#Deleted in new
chr1	3895294	3896183	ENSG00000198912.10|C1orf174|pc|chr1:3895294:3896183:-	0	-
#Partially deleted in new
chr13	89551200	89551290	ENSG00000236176.2|LINC00353|lncRNA|chr13:89551200:89551290:-	0	-
#Deleted in new
chr13	89551232	89551277	ENSG00000271395.1|LINC02336|lncRNA|chr13:89551232:89551277:+	0	+
#Deleted in new
chr13	89552104	89552389	ENSG00000271395.1|LINC02336|lncRNA|chr13:89552104:89552389:+	0	+
#Deleted in new
chr1	3900371	3900631	ENSG00000236423.5|LINC01134|lncRNA|chr1:3900371:3900631:+	0	+
#Deleted in new
chr1	3900403	3900631	ENSG00000236423.5|LINC01134|lncRNA|chr1:3900403:3900631:+	0	+
#Deleted in new
chr1	3900415	3900631	ENSG00000236423.5|LINC01134|lncRNA|chr1:3900415:3900631:+	0	+
#Deleted in new
chr13	90060246	90060612	ENSG00000261446.2|LINC00559|lncRNA|chr13:90060246:90060612:-	0	-
#Deleted in new
chr13	90079126	90079262	ENSG00000261446.2|LINC00559|lncRNA|chr13:90079126:90079262:-	0	-
#Deleted in new
chr13	90105946	90106202	ENSG00000261446.2|LINC00559|lncRNA|chr13:90105946:90106202:-	0	-
#Deleted in new
chr13	90106582	90108661	ENSG00000261446.2|LINC00559|lncRNA|chr13:90106582:90108661:-	0	-
#Deleted in new
chr13	90118772	90119719	ENSG00000261446.2|LINC00559|lncRNA|chr13:90118772:90119719:-	0	-
#Deleted in new
chr13	90493286	90493417	ENSG00000234384.1|LINC01049|lncRNA|chr13:90493286:90493417:+	0	+
#Deleted in new
chr13	90532775	90532820	ENSG00000234384.1|LINC01049|lncRNA|chr13:90532775:90532820:+	0	+
#Deleted in new
chr13	90893386	90893540	ENSG00000231674.1|LINC00410|lncRNA|chr13:90893386:90893540:-	0	-
#Deleted in new
chr13	90901220	90901238	ENSG00000231674.1|LINC00410|lncRNA|chr13:90901220:90901238:-	0	-
#Deleted in new
chr13	90903393	90903510	ENSG00000231674.1|LINC00410|lncRNA|chr13:90903393:90903510:-	0	-
#Deleted in new
chr13	90911330	90911454	ENSG00000231674.1|LINC00410|lncRNA|chr13:90911330:90911454:-	0	-
#Deleted in new
chr13	91130678	91130792	ENSG00000229557.1|LINC00379|lncRNA|chr13:91130678:91130792:-	0	-
#Deleted in new
chr13	91131222	91131365	ENSG00000229557.1|LINC00379|lncRNA|chr13:91131222:91131365:-	0	-
#Deleted in new
chr13	91131222	91131407	ENSG00000229557.1|LINC00379|lncRNA|chr13:91131222:91131407:-	0	-
#Deleted in new
chr1	3913691	3914290	ENSG00000236423.5|LINC01134|lncRNA|chr1:3913691:3914290:+	0	+
#Deleted in new
chr1	3914394	3915447	ENSG00000236423.5|LINC01134|lncRNA|chr1:3914394:3915447:+	0	+
#Deleted in new
chr1	3914394	3917225	ENSG00000236423.5|LINC01134|lncRNA|chr1:3914394:3917225:+	0	+
#Deleted in new
chr13	92339793	92339987	ENSG00000232885.1|GPC5-AS2|lncRNA|chr13:92339793:92339987:-	0	-
#Deleted in new
chr13	92340396	92340603	ENSG00000232885.1|GPC5-AS2|lncRNA|chr13:92340396:92340603:-	0	-
#Partially deleted in new
chr13	92446469	92449056	ENSG00000283097.1|AL159152.1|lncRNA|chr13:92446469:92449056:+	0	+
#Deleted in new
chr13	92484605	92484681	ENSG00000236240.1|GPC5-IT1|lncRNA|chr13:92484605:92484681:+	0	+
#Partially deleted in new
chr1	39257534	39257649	ENSG00000226438.1|AL442071.1|lncRNA|chr1:39257534:39257649:-	0	-
#Deleted in new
chr1	39260389	39260540	ENSG00000127603.24|MACF1|pc|chr1:39260389:39260540:+	0	+
#Deleted in new
chr13	92658993	92659227	ENSG00000282993.1|AL356737.1|lncRNA|chr13:92658993:92659227:-	0	-
#Deleted in new
chr13	92701388	92701516	ENSG00000235984.5|GPC5-AS1|lncRNA|chr13:92701388:92701516:-	0	-
#Deleted in new
chr13	92705960	92706059	ENSG00000235984.5|GPC5-AS1|lncRNA|chr13:92705960:92706059:-	0	-
#Deleted in new
chr13	92709488	92709573	ENSG00000235984.5|GPC5-AS1|lncRNA|chr13:92709488:92709573:-	0	-
#Deleted in new
chr13	93818423	93818782	ENSG00000224394.1|GPC6-AS2|lncRNA|chr13:93818423:93818782:-	0	-
#Deleted in new
chr13	93836056	93836144	ENSG00000224394.1|GPC6-AS2|lncRNA|chr13:93836056:93836144:-	0	-
#Deleted in new
chr1	3940564	3940698	ENSG00000233304.6|LINC01346|lncRNA|chr1:3940564:3940698:+	0	+
#Deleted in new
chr1	3940612	3940698	ENSG00000233304.6|LINC01346|lncRNA|chr1:3940612:3940698:+	0	+
#Deleted in new
chr1	3940616	3940698	ENSG00000233304.6|LINC01346|lncRNA|chr1:3940616:3940698:+	0	+
#Deleted in new
chr13	94445688	94445761	ENSG00000080166.15|DCT|pc|chr13:94445688:94445761:-	0	-
#Deleted in new
chr13	94445718	94445761	ENSG00000080166.15|DCT|pc|chr13:94445718:94445761:-	0	-
#Deleted in new
chr13	94452606	94452662	ENSG00000080166.15|DCT|pc|chr13:94452606:94452662:-	0	-
#Deleted in new
chr1	3945187	3945462	ENSG00000233304.6|LINC01346|lncRNA|chr1:3945187:3945462:+	0	+
#Deleted in new
chr1	3945493	3945669	ENSG00000226374.2|LINC01345|lncRNA|chr1:3945493:3945669:-	0	-
#Partially deleted in new
chr1	3946319	3946463	ENSG00000226374.2|LINC01345|lncRNA|chr1:3946319:3946463:-	0	-
#Deleted in new
chr13	94700687	94700737	ENSG00000238230.1|LINC00391|lncRNA|chr13:94700687:94700737:-	0	-
#Deleted in new
chr1	3947148	3947328	ENSG00000226374.2|LINC01345|lncRNA|chr1:3947148:3947328:-	0	-
#Deleted in new
chr1	3947274	3947328	ENSG00000226374.2|LINC01345|lncRNA|chr1:3947274:3947328:-	0	-
#Deleted in new
chr1	3947956	3948595	ENSG00000226374.2|LINC01345|lncRNA|chr1:3947956:3948595:-	0	-
#Deleted in new
chr1	3948862	3948900	ENSG00000226374.2|LINC01345|lncRNA|chr1:3948862:3948900:-	0	-
#Deleted in new
chr1	3948862	3948980	ENSG00000226374.2|LINC01345|lncRNA|chr1:3948862:3948980:-	0	-
#Deleted in new
chr1	3949026	3949351	ENSG00000233304.6|LINC01346|lncRNA|chr1:3949026:3949351:+	0	+
#Partially deleted in new
chr13	95055569	95055819	ENSG00000125257.13|ABCC4|pc|chr13:95055569:95055819:-	0	-
#Deleted in new
chr13	95095768	95096179	ENSG00000125257.13|ABCC4|pc|chr13:95095768:95096179:-	0	-
#Deleted in new
chr13	95095943	95096179	ENSG00000125257.13|ABCC4|pc|chr13:95095943:95096179:-	0	-
#Partially deleted in new
chr1	3952252	3955262	ENSG00000233304.6|LINC01346|lncRNA|chr1:3952252:3955262:+	0	+
#Deleted in new
chr1	39523561	39523697	ENSG00000182109.7|AL365277.1|lncRNA|chr1:39523561:39523697:-	0	-
#Split in new
chr1	39523806	39525685	ENSG00000182109.7|AL365277.1|lncRNA|chr1:39523806:39525685:-	0	-
#Deleted in new
chr1	39524835	39524876	ENSG00000182109.7|AL365277.1|lncRNA|chr1:39524835:39524876:-	0	-
#Deleted in new
chr1	39524835	39525057	ENSG00000182109.7|AL365277.1|lncRNA|chr1:39524835:39525057:-	0	-
#Partially deleted in new
chr1	39529015	39529164	ENSG00000182109.7|AL365277.1|lncRNA|chr1:39529015:39529164:-	0	-
#Partially deleted in new
chr1	39529054	39529164	ENSG00000182109.7|AL365277.1|lncRNA|chr1:39529054:39529164:-	0	-
#Deleted in new
chr1	39537190	39537282	ENSG00000182109.7|AL365277.1|lncRNA|chr1:39537190:39537282:-	0	-
#Deleted in new
chr13	95479443	95479962	ENSG00000223392.1|CLDN10-AS1|lncRNA|chr13:95479443:95479962:-	0	-
#Deleted in new
chr13	95637008	95637176	ENSG00000134874.17|DZIP1|pc|chr13:95637008:95637176:-	0	-
#Deleted in new
chr13	95648732	95648834	ENSG00000247400.3|DNAJC3-AS1|lncRNA|chr13:95648732:95648834:-	0	-
#Deleted in new
chr13	95672834	95674668	ENSG00000247400.3|DNAJC3-AS1|lncRNA|chr13:95672834:95674668:-	0	-
#Deleted in new
chr1	39571606	39571705	ENSG00000090621.13|PABPC4|pc|chr1:39571606:39571705:-	0	-
#Deleted in new
chr1	39573080	39573203	ENSG00000228060.1|AL365277.2|lncRNA|chr1:39573080:39573203:+	0	+
#Split in new
chr13	95744725	95745765	ENSG00000276809.1|AL138955.1|lncRNA|chr13:95744725:95745765:+	0	+
#Deleted in new
chr13	95984903	95985337	ENSG00000102595.19|UGGT2|pc|chr13:95984903:95985337:-	0	-
#Deleted in new
chr13	95984909	95985337	ENSG00000102595.19|UGGT2|pc|chr13:95984909:95985337:-	0	-
#Deleted in new
chr13	95985046	95985337	ENSG00000102595.19|UGGT2|pc|chr13:95985046:95985337:-	0	-
#Deleted in new
chr13	95989520	95989598	ENSG00000102595.19|UGGT2|pc|chr13:95989520:95989598:-	0	-
#Partially deleted in new
chr13	95990144	95991473	ENSG00000102595.19|UGGT2|pc|chr13:95990144:95991473:-	0	-
#Deleted in new
chr13	95995352	95995362	ENSG00000102595.19|UGGT2|pc|chr13:95995352:95995362:-	0	-
#Deleted in new
chr13	96989757	96989809	ENSG00000165621.8|OXGR1|pc|chr13:96989757:96989809:-	0	-
#Deleted in new
chr13	96994297	96994350	ENSG00000165621.8|OXGR1|pc|chr13:96994297:96994350:-	0	-
#Deleted in new
chr13	96994297	96994369	ENSG00000165621.8|OXGR1|pc|chr13:96994297:96994369:-	0	-
#Deleted in new
chr13	96994297	96994476	ENSG00000165621.8|OXGR1|pc|chr13:96994297:96994476:-	0	-
#Deleted in new
chr13	96994568	96994730	ENSG00000165621.8|OXGR1|pc|chr13:96994568:96994730:-	0	-
#Partially deleted in new
chr13	97172468	97172864	ENSG00000233124.1|LINC00456|lncRNA|chr13:97172468:97172864:-	0	-
#Deleted in new
chr13	97437267	97437630	ENSG00000276704.1|AL442067.2|lncRNA|chr13:97437267:97437630:+	0	+
#Deleted in new
chr13	97441767	97441850	ENSG00000125249.6|RAP2A|pc|chr13:97441767:97441850:+	0	+
#Partially deleted in new
chr1	39745374	39748767	ENSG00000084072.16|PPIE|pc|chr1:39745374:39748767:+	0	+
#Split in new
chr1	39757181	39760568	ENSG00000116985.11|BMP8B|pc|chr1:39757181:39760568:-	0	-
#Deleted in new
chr1	39761198	39761373	ENSG00000084072.16|PPIE|pc|chr1:39761198:39761373:+	0	+
#Deleted in new
chr1	3976132	3976195	ENSG00000284668.1|AL805961.1|lncRNA|chr1:3976132:3976195:+	0	+
#Deleted in new
chr1	3976139	3976195	ENSG00000284668.1|AL805961.1|lncRNA|chr1:3976139:3976195:+	0	+
#Deleted in new
chr1	39762516	39762651	ENSG00000084072.16|PPIE|pc|chr1:39762516:39762651:+	0	+
#Deleted in new
chr13	97675010	97675529	ENSG00000226134.1|AL359502.1|lncRNA|chr13:97675010:97675529:-	0	-
#Deleted in new
chr13	97677790	97677963	ENSG00000226134.1|AL359502.1|lncRNA|chr13:97677790:97677963:-	0	-
#Deleted in new
chr1	3976881	3977102	ENSG00000284668.1|AL805961.1|lncRNA|chr1:3976881:3977102:+	0	+
#Deleted in new
chr1	3976881	3977157	ENSG00000284668.1|AL805961.1|lncRNA|chr1:3976881:3977157:+	0	+
#Deleted in new
chr13	97939355	97939464	ENSG00000270725.1|AL356580.1|lncRNA|chr13:97939355:97939464:+	0	+
#Deleted in new
chr13	97963159	97963282	ENSG00000065150.18|IPO5|pc|chr13:97963159:97963282:+	0	+
#Deleted in new
chr13	97982054	97982143	ENSG00000065150.18|IPO5|pc|chr13:97982054:97982143:+	0	+
#Deleted in new
chr13	97987989	97988101	ENSG00000065150.18|IPO5|pc|chr13:97987989:97988101:+	0	+
#Partially deleted in new
chr13	98001645	98002591	ENSG00000065150.18|IPO5|pc|chr13:98001645:98002591:+	0	+
#Deleted in new
chr1	39800325	39800391	ENSG00000284719.1|AL033527.5|lncRNA|chr1:39800325:39800391:+	0	+
#Deleted in new
chr1	39801413	39801484	ENSG00000284678.1|AL033527.4|lncRNA|chr1:39801413:39801484:-	0	-
#Deleted in new
chr1	39804520	39805032	ENSG00000284719.1|AL033527.5|lncRNA|chr1:39804520:39805032:+	0	+
#Deleted in new
chr1	39804877	39805452	ENSG00000284719.1|AL033527.5|lncRNA|chr1:39804877:39805452:+	0	+
#Deleted in new
chr1	39808001	39808198	ENSG00000284719.1|AL033527.5|lncRNA|chr1:39808001:39808198:+	0	+
#Deleted in new
chr1	39809053	39809371	ENSG00000284678.1|AL033527.4|lncRNA|chr1:39809053:39809371:-	0	-
#Deleted in new
chr1	39809061	39809450	ENSG00000284719.1|AL033527.5|lncRNA|chr1:39809061:39809450:+	0	+
#Deleted in new
chr13	98159491	98159598	ENSG00000152767.16|FARP1|pc|chr13:98159491:98159598:+	0	+
#Deleted in new
chr13	98175784	98176176	ENSG00000139797.7|RNF113B|pc|chr13:98175784:98176176:-	0	-
#Deleted in new
chr13	98177816	98177929	ENSG00000152767.16|FARP1|pc|chr13:98177816:98177929:+	0	+
#Deleted in new
chr13	98328190	98328324	ENSG00000152767.16|FARP1|pc|chr13:98328190:98328324:+	0	+
#Deleted in new
chr13	98328227	98328490	ENSG00000152767.16|FARP1|pc|chr13:98328227:98328490:+	0	+
#Deleted in new
chr13	98328535	98328807	ENSG00000152767.16|FARP1|pc|chr13:98328535:98328807:+	0	+
#Deleted in new
chr13	98328717	98328807	ENSG00000152767.16|FARP1|pc|chr13:98328717:98328807:+	0	+
#Deleted in new
chr13	98328777	98328807	ENSG00000152767.16|FARP1|pc|chr13:98328777:98328807:+	0	+
#Deleted in new
chr13	98328777	98329159	ENSG00000152767.16|FARP1|pc|chr13:98328777:98329159:+	0	+
#Deleted in new
chr13	98328779	98329159	ENSG00000152767.16|FARP1|pc|chr13:98328779:98329159:+	0	+
#Deleted in new
chr13	98328782	98329159	ENSG00000152767.16|FARP1|pc|chr13:98328782:98329159:+	0	+
#Deleted in new
chr13	98328784	98329159	ENSG00000152767.16|FARP1|pc|chr13:98328784:98329159:+	0	+
#Deleted in new
chr13	98328879	98329159	ENSG00000152767.16|FARP1|pc|chr13:98328879:98329159:+	0	+
#Deleted in new
chr13	98328948	98329159	ENSG00000152767.16|FARP1|pc|chr13:98328948:98329159:+	0	+
#Deleted in new
chr13	98329071	98329159	ENSG00000152767.16|FARP1|pc|chr13:98329071:98329159:+	0	+
#Partially deleted in new
chr13	98329330	98329754	ENSG00000152767.16|FARP1|pc|chr13:98329330:98329754:+	0	+
#Deleted in new
chr13	98338505	98338758	ENSG00000152767.16|FARP1|pc|chr13:98338505:98338758:+	0	+
#Deleted in new
chr13	98338505	98338879	ENSG00000152767.16|FARP1|pc|chr13:98338505:98338879:+	0	+
#Deleted in new
chr13	98338743	98338879	ENSG00000152767.16|FARP1|pc|chr13:98338743:98338879:+	0	+
#Deleted in new
chr13	98345483	98345610	ENSG00000152767.16|FARP1|pc|chr13:98345483:98345610:+	0	+
#Deleted in new
chr13	98381554	98381687	ENSG00000152767.16|FARP1|pc|chr13:98381554:98381687:+	0	+
#Deleted in new
chr13	98382279	98382540	ENSG00000152767.16|FARP1|pc|chr13:98382279:98382540:+	0	+
#Deleted in new
chr13	98425439	98425498	ENSG00000152767.16|FARP1|pc|chr13:98425439:98425498:+	0	+
#Partially deleted in new
chr13	98431156	98434997	ENSG00000152767.16|FARP1|pc|chr13:98431156:98434997:+	0	+
#Partially deleted in new
chr13	98435575	98436101	ENSG00000152767.16|FARP1|pc|chr13:98435575:98436101:+	0	+
#Deleted in new
chr13	98435771	98435840	ENSG00000231194.1|FARP1-AS1|lncRNA|chr13:98435771:98435840:-	0	-
#Deleted in new
chr13	98437765	98437858	ENSG00000152767.16|FARP1|pc|chr13:98437765:98437858:+	0	+
#Partially deleted in new
chr13	98455981	98456560	ENSG00000102572.14|STK24|pc|chr13:98455981:98456560:-	0	-
#Deleted in new
chr13	98508778	98508967	ENSG00000102572.14|STK24|pc|chr13:98508778:98508967:-	0	-
#Partially deleted in new
chr13	98720526	98721585	ENSG00000088386.16|SLC15A1|pc|chr13:98720526:98721585:-	0	-
#Deleted in new
chr1	39876061	39876132	ENSG00000043514.15|TRIT1|pc|chr1:39876061:39876132:-	0	-
#Deleted in new
chr13	98832083	98832143	ENSG00000229918.1|DOCK9-AS1|lncRNA|chr13:98832083:98832143:+	0	+
#Deleted in new
chr13	98832998	98833076	ENSG00000229918.1|DOCK9-AS1|lncRNA|chr13:98832998:98833076:+	0	+
#Deleted in new
chr13	98834375	98834629	ENSG00000229918.1|DOCK9-AS1|lncRNA|chr13:98834375:98834629:+	0	+
#Deleted in new
chr13	98959402	98959534	ENSG00000088387.18|DOCK9|pc|chr13:98959402:98959534:-	0	-
#Deleted in new
chr13	99196376	99197802	ENSG00000228889.6|UBAC2-AS1|lncRNA|chr13:99196376:99197802:-	0	-
#Partially deleted in new
chr13	99200365	99200710	ENSG00000228889.6|UBAC2-AS1|lncRNA|chr13:99200365:99200710:-	0	-
#Deleted in new
chr13	99231433	99231513	ENSG00000134882.15|UBAC2|pc|chr13:99231433:99231513:+	0	+
#Partially deleted in new
chr13	99312782	99313387	ENSG00000134882.15|UBAC2|pc|chr13:99312782:99313387:+	0	+
#Deleted in new
chr13	99314707	99314839	ENSG00000134882.15|UBAC2|pc|chr13:99314707:99314839:+	0	+
#Partially deleted in new
chr13	99376917	99377650	ENSG00000134882.15|UBAC2|pc|chr13:99376917:99377650:+	0	+
#Deleted in new
chr13	99486961	99487816	ENSG00000280734.2|LINC01232|lncRNA|chr13:99486961:99487816:-	0	-
#Deleted in new
chr13	99491467	99494143	ENSG00000280734.2|LINC01232|lncRNA|chr13:99491467:99494143:-	0	-
#Deleted in new
chr13	99491474	99492103	ENSG00000280734.2|LINC01232|lncRNA|chr13:99491474:99492103:-	0	-
#Deleted in new
chr13	99493774	99495817	ENSG00000280734.2|LINC01232|lncRNA|chr13:99493774:99495817:-	0	-
#Deleted in new
chr13	99495476	99495817	ENSG00000280734.2|LINC01232|lncRNA|chr13:99495476:99495817:-	0	-
#Deleted in new
chr13	99496134	99496217	ENSG00000280734.2|LINC01232|lncRNA|chr13:99496134:99496217:-	0	-
#Deleted in new
chr13	99496417	99496544	ENSG00000280734.2|LINC01232|lncRNA|chr13:99496417:99496544:-	0	-
#Deleted in new
chr13	99496697	99496738	ENSG00000280734.2|LINC01232|lncRNA|chr13:99496697:99496738:-	0	-
#Deleted in new
chr13	99496708	99496772	ENSG00000280734.2|LINC01232|lncRNA|chr13:99496708:99496772:-	0	-
#Deleted in new
chr13	99497248	99497336	ENSG00000280734.2|LINC01232|lncRNA|chr13:99497248:99497336:-	0	-
#Deleted in new
chr13	99499726	99499940	ENSG00000203441.2|LINC00449|lncRNA|chr13:99499726:99499940:-	0	-
#Deleted in new
chr13	99514214	99514316	ENSG00000125304.8|TM9SF2|pc|chr13:99514214:99514316:+	0	+
#Deleted in new
chr1	3995641	3995691	ENSG00000284668.1|AL805961.1|lncRNA|chr1:3995641:3995691:+	0	+
#Deleted in new
chr13	99577111	99577391	ENSG00000234168.2|LINC01039|lncRNA|chr13:99577111:99577391:+	0	+
#Deleted in new
chr1	3995784	3995830	ENSG00000284668.1|AL805961.1|lncRNA|chr1:3995784:3995830:+	0	+
#Deleted in new
chr13	99578469	99578639	ENSG00000234168.2|LINC01039|lncRNA|chr13:99578469:99578639:+	0	+
#Deleted in new
chr1	3996806	3996932	ENSG00000284668.1|AL805961.1|lncRNA|chr1:3996806:3996932:+	0	+
#Deleted in new
chr1	3996823	3996932	ENSG00000284668.1|AL805961.1|lncRNA|chr1:3996823:3996932:+	0	+
#Deleted in new
chr1	3998055	3998058	ENSG00000284668.1|AL805961.1|lncRNA|chr1:3998055:3998058:+	0	+
#Deleted in new
chr1	40067269	40067311	ENSG00000131236.16|CAP1|pc|chr1:40067269:40067311:+	0	+
#Partially deleted in new
chr1	40075129	40075245	ENSG00000131238.17|PPT1|pc|chr1:40075129:40075245:-	0	-
#Deleted in new
chr1	40078811	40078835	ENSG00000131238.17|PPT1|pc|chr1:40078811:40078835:-	0	-
#Deleted in new
chr1	40082183	40082321	ENSG00000131238.17|PPT1|pc|chr1:40082183:40082321:-	0	-
#Deleted in new
chr1	40093932	40094019	ENSG00000131238.17|PPT1|pc|chr1:40093932:40094019:-	0	-
#Deleted in new
chr1	4012230	4012699	ENSG00000284668.1|AL805961.1|lncRNA|chr1:4012230:4012699:+	0	+
#Deleted in new
chr1	4012920	4016706	ENSG00000284703.1|AL805961.2|lncRNA|chr1:4012920:4016706:-	0	-
#Deleted in new
chr1	40245946	40245982	ENSG00000188800.5|TMCO2|pc|chr1:40245946:40245982:+	0	+
#Deleted in new
chr1	40247334	40247448	ENSG00000188800.5|TMCO2|pc|chr1:40247334:40247448:+	0	+
#Deleted in new
chr1	40259349	40259532	ENSG00000084073.8|ZMPSTE24|pc|chr1:40259349:40259532:+	0	+
#Deleted in new
chr1	40344849	40344910	ENSG00000084070.11|SMAP2|pc|chr1:40344849:40344910:+	0	+
#Deleted in new
chr1	40393344	40393504	ENSG00000084070.11|SMAP2|pc|chr1:40393344:40393504:+	0	+
#Deleted in new
chr1	40396799	40396890	ENSG00000084070.11|SMAP2|pc|chr1:40396799:40396890:+	0	+
#Deleted in new
chr1	40436198	40436448	ENSG00000284677.1|AL031985.4|lncRNA|chr1:40436198:40436448:-	0	-
#Deleted in new
chr1	40436531	40436611	ENSG00000284677.1|AL031985.4|lncRNA|chr1:40436531:40436611:-	0	-
#Deleted in new
chr1	40438319	40438400	ENSG00000284677.1|AL031985.4|lncRNA|chr1:40438319:40438400:-	0	-
#Deleted in new
chr1	40438524	40438566	ENSG00000284677.1|AL031985.4|lncRNA|chr1:40438524:40438566:-	0	-
#Deleted in new
chr1	40449819	40450039	ENSG00000284677.1|AL031985.4|lncRNA|chr1:40449819:40450039:-	0	-
#Deleted in new
chr1	40450101	40450175	ENSG00000187801.14|ZFP69B|pc|chr1:40450101:40450175:+	0	+
#Deleted in new
chr1	40450106	40450175	ENSG00000187801.14|ZFP69B|pc|chr1:40450106:40450175:+	0	+
#Duplicated in new
chr1	40450655	40451088	ENSG00000187801.14|ZFP69B|pc|chr1:40450655:40451088:+	0	+
#Duplicated in new
chr1	40450664	40451088	ENSG00000187801.14|ZFP69B|pc|chr1:40450664:40451088:+	0	+
#Partially deleted in new
chr1	40464318	40466767	ENSG00000260920.2|AL031985.3|lncRNA|chr1:40464318:40466767:+	0	+
#Deleted in new
chr1	40473054	40474059	ENSG00000279667.1|AL603839.4|lncRNA|chr1:40473054:40474059:+	0	+
#Deleted in new
chr1	40477214	40477894	ENSG00000187815.9|ZFP69|pc|chr1:40477214:40477894:+	0	+
#Deleted in new
chr1	40477629	40477894	ENSG00000187815.9|ZFP69|pc|chr1:40477629:40477894:+	0	+
#Partially deleted in new
chr1	40490779	40491156	ENSG00000187815.9|ZFP69|pc|chr1:40490779:40491156:+	0	+
#Partially deleted in new
chr1	40493156	40493688	ENSG00000238287.1|AL603839.3|lncRNA|chr1:40493156:40493688:-	0	-
#Deleted in new
chr1	40508588	40508661	ENSG00000238287.1|AL603839.3|lncRNA|chr1:40508588:40508661:-	0	-
#Deleted in new
chr1	40508740	40508877	ENSG00000164002.11|EXO5|pc|chr1:40508740:40508877:+	0	+
#Partially deleted in new
chr1	40508746	40509790	ENSG00000164002.11|EXO5|pc|chr1:40508746:40509790:+	0	+
#Deleted in new
chr1	40508753	40508908	ENSG00000164002.11|EXO5|pc|chr1:40508753:40508908:+	0	+
#Deleted in new
chr1	40508760	40508877	ENSG00000164002.11|EXO5|pc|chr1:40508760:40508877:+	0	+
#Deleted in new
chr1	40508766	40508889	ENSG00000164002.11|EXO5|pc|chr1:40508766:40508889:+	0	+
#Deleted in new
chr1	40508774	40508877	ENSG00000164002.11|EXO5|pc|chr1:40508774:40508877:+	0	+
#Deleted in new
chr1	40508789	40508908	ENSG00000164002.11|EXO5|pc|chr1:40508789:40508908:+	0	+
#Deleted in new
chr1	40508797	40508908	ENSG00000164002.11|EXO5|pc|chr1:40508797:40508908:+	0	+
#Deleted in new
chr1	40508805	40508889	ENSG00000164002.11|EXO5|pc|chr1:40508805:40508889:+	0	+
#Deleted in new
chr1	40509084	40509349	ENSG00000164002.11|EXO5|pc|chr1:40509084:40509349:+	0	+
#Partially deleted in new
chr1	40516994	40517174	ENSG00000238186.1|AL603839.2|lncRNA|chr1:40516994:40517174:-	0	-
#Deleted in new
chr1	40531560	40531787	ENSG00000117010.15|ZNF684|pc|chr1:40531560:40531787:+	0	+
#Deleted in new
chr1	40531652	40531787	ENSG00000117010.15|ZNF684|pc|chr1:40531652:40531787:+	0	+
#Deleted in new
chr1	40531662	40531787	ENSG00000117010.15|ZNF684|pc|chr1:40531662:40531787:+	0	+
#Deleted in new
chr1	40531721	40531787	ENSG00000117010.15|ZNF684|pc|chr1:40531721:40531787:+	0	+
#Deleted in new
chr1	40533142	40533181	ENSG00000117010.15|ZNF684|pc|chr1:40533142:40533181:+	0	+
#Deleted in new
chr1	40544396	40545037	ENSG00000117010.15|ZNF684|pc|chr1:40544396:40545037:+	0	+
#Deleted in new
chr1	40544415	40545037	ENSG00000117010.15|ZNF684|pc|chr1:40544415:40545037:+	0	+
#Deleted in new
chr1	40546561	40546708	ENSG00000117010.15|ZNF684|pc|chr1:40546561:40546708:+	0	+
#Partially deleted in new
chr1	40546561	40546765	ENSG00000117010.15|ZNF684|pc|chr1:40546561:40546765:+	0	+
#Deleted in new
chr1	40669426	40669607	ENSG00000237899.1|AL031289.1|lncRNA|chr1:40669426:40669607:-	0	-
#Partially deleted in new
chr1	40673315	40673458	ENSG00000237899.1|AL031289.1|lncRNA|chr1:40673315:40673458:-	0	-
#Deleted in new
chr1	40687524	40687588	ENSG00000237899.1|AL031289.1|lncRNA|chr1:40687524:40687588:-	0	-
#Deleted in new
chr1	40695605	40695745	ENSG00000066136.20|NFYC|pc|chr1:40695605:40695745:+	0	+
#Deleted in new
chr1	40712397	40712469	ENSG00000066136.20|NFYC|pc|chr1:40712397:40712469:+	0	+
#Deleted in new
chr1	40712686	40712821	ENSG00000066136.20|NFYC|pc|chr1:40712686:40712821:+	0	+
#Deleted in new
chr1	40721605	40721704	ENSG00000066136.20|NFYC|pc|chr1:40721605:40721704:+	0	+
#Deleted in new
chr1	40723688	40723792	ENSG00000066136.20|NFYC|pc|chr1:40723688:40723792:+	0	+
#Deleted in new
chr1	40734847	40735033	ENSG00000066136.20|NFYC|pc|chr1:40734847:40735033:+	0	+
#Deleted in new
chr1	40763362	40763489	ENSG00000066136.20|NFYC|pc|chr1:40763362:40763489:+	0	+
#Deleted in new
chr14	100052802	100052988	ENSG00000258560.1|AL157912.1|lncRNA|chr14:100052802:100052988:-	0	-
#Deleted in new
chr14	100074502	100074615	ENSG00000196405.12|EVL|pc|chr14:100074502:100074615:+	0	+
#Partially deleted in new
chr14	100074516	100074878	ENSG00000258560.1|AL157912.1|lncRNA|chr14:100074516:100074878:-	0	-
#Deleted in new
chr14	100102303	100102347	ENSG00000196405.12|EVL|pc|chr14:100102303:100102347:+	0	+
#Deleted in new
chr14	100102303	100102379	ENSG00000196405.12|EVL|pc|chr14:100102303:100102379:+	0	+
#Deleted in new
chr14	100102303	100102425	ENSG00000196405.12|EVL|pc|chr14:100102303:100102425:+	0	+
#Deleted in new
chr14	100134652	100134867	ENSG00000196405.12|EVL|pc|chr14:100134652:100134867:+	0	+
#Deleted in new
chr14	100135007	100135522	ENSG00000196405.12|EVL|pc|chr14:100135007:100135522:+	0	+
#Deleted in new
chr14	100139333	100139369	ENSG00000196405.12|EVL|pc|chr14:100139333:100139369:+	0	+
#Deleted in new
chr1	41001538	41001584	ENSG00000171793.13|CTPS1|pc|chr1:41001538:41001584:+	0	+
#Deleted in new
chr14	100207406	100207652	ENSG00000258982.1|AL133523.1|lncRNA|chr14:100207406:100207652:-	0	-
#Deleted in new
chr14	100263780	100264221	ENSG00000258904.1|AL157871.5|lncRNA|chr14:100263780:100264221:+	0	+
#Deleted in new
chr14	100265313	100265405	ENSG00000258904.1|AL157871.5|lncRNA|chr14:100265313:100265405:+	0	+
#Partially deleted in new
chr14	100293293	100296545	ENSG00000197119.12|SLC25A29|pc|chr14:100293293:100296545:-	0	-
#Partially deleted in new
chr14	100294392	100294656	ENSG00000258504.2|AL157871.1|lncRNA|chr14:100294392:100294656:+	0	+
#Deleted in new
chr14	100295625	100295656	ENSG00000197119.12|SLC25A29|pc|chr14:100295625:100295656:-	0	-
#Deleted in new
chr14	100295625	100295697	ENSG00000197119.12|SLC25A29|pc|chr14:100295625:100295697:-	0	-
#Deleted in new
chr14	100295625	100295734	ENSG00000197119.12|SLC25A29|pc|chr14:100295625:100295734:-	0	-
#Deleted in new
chr14	100295625	100295993	ENSG00000197119.12|SLC25A29|pc|chr14:100295625:100295993:-	0	-
#Deleted in new
chr14	100295692	100295993	ENSG00000197119.12|SLC25A29|pc|chr14:100295692:100295993:-	0	-
#Deleted in new
chr14	100295694	100295993	ENSG00000197119.12|SLC25A29|pc|chr14:100295694:100295993:-	0	-
#Deleted in new
chr14	100295819	100295861	ENSG00000197119.12|SLC25A29|pc|chr14:100295819:100295861:-	0	-
#Deleted in new
chr14	100295892	100295993	ENSG00000197119.12|SLC25A29|pc|chr14:100295892:100295993:-	0	-
#Deleted in new
chr14	100295896	100295993	ENSG00000197119.12|SLC25A29|pc|chr14:100295896:100295993:-	0	-
#Deleted in new
chr14	100339831	100340080	ENSG00000258521.1|AL157871.2|lncRNA|chr14:100339831:100340080:+	0	+
#Deleted in new
chr14	100340251	100340554	ENSG00000258521.1|AL157871.2|lncRNA|chr14:100340251:100340554:+	0	+
#Deleted in new
chr14	100365474	100365576	ENSG00000140105.17|WARS|pc|chr14:100365474:100365576:-	0	-
#Deleted in new
chr14	100365953	100366067	ENSG00000140105.17|WARS|pc|chr14:100365953:100366067:-	0	-
#Deleted in new
chr14	100368373	100368465	ENSG00000140105.17|WARS|pc|chr14:100368373:100368465:-	0	-
#Deleted in new
chr14	100368441	100368465	ENSG00000140105.17|WARS|pc|chr14:100368441:100368465:-	0	-
#Deleted in new
chr14	100381999	100382151	ENSG00000176473.13|WDR25|pc|chr14:100381999:100382151:+	0	+
#Partially deleted in new
chr14	100406959	100407029	ENSG00000258620.1|AL135838.1|lncRNA|chr14:100406959:100407029:+	0	+
#Deleted in new
chr14	100504496	100504697	ENSG00000176473.13|WDR25|pc|chr14:100504496:100504697:+	0	+
#Deleted in new
chr14	100546021	100546267	ENSG00000183092.16|BEGAIN|pc|chr14:100546021:100546267:-	0	-
#Deleted in new
chr14	100669320	100669446	ENSG00000196273.7|LINC00523|lncRNA|chr14:100669320:100669446:+	0	+
#Deleted in new
chr14	100725704	100725833	ENSG00000185559.13|DLK1|pc|chr14:100725704:100725833:+	0	+
#Partially deleted in new
chr14	100830967	100831094	ENSG00000214548.14|MEG3|lncRNA|chr14:100830967:100831094:+	0	+
#Deleted in new
chr14	100831015	100831094	ENSG00000214548.14|MEG3|lncRNA|chr14:100831015:100831094:+	0	+
#Partially deleted in new
chr14	100834431	100834577	ENSG00000258663.1|AL117190.2|lncRNA|chr14:100834431:100834577:-	0	-
#Deleted in new
chr14	100914671	100914972	ENSG00000225746.9|MEG8|lncRNA|chr14:100914671:100914972:+	0	+
#Deleted in new
chr14	100936177	100936310	ENSG00000258399.7|AL117190.1|lncRNA|chr14:100936177:100936310:+	0	+
#Deleted in new
chr14	100937400	100937488	ENSG00000225746.9|MEG8|lncRNA|chr14:100937400:100937488:+	0	+
#Deleted in new
chr14	100937402	100937488	ENSG00000225746.9|MEG8|lncRNA|chr14:100937402:100937488:+	0	+
#Deleted in new
chr14	100937402	100937488	ENSG00000258399.7|AL117190.1|lncRNA|chr14:100937402:100937488:+	0	+
#Deleted in new
chr14	100942761	100942826	ENSG00000258399.7|AL117190.1|lncRNA|chr14:100942761:100942826:+	0	+
#Deleted in new
chr14	100942761	100942838	ENSG00000225746.9|MEG8|lncRNA|chr14:100942761:100942838:+	0	+
#Deleted in new
chr14	100942764	100942838	ENSG00000225746.9|MEG8|lncRNA|chr14:100942764:100942838:+	0	+
#Deleted in new
chr14	100947033	100947076	ENSG00000225746.9|MEG8|lncRNA|chr14:100947033:100947076:+	0	+
#Deleted in new
chr14	100947033	100947079	ENSG00000225746.9|MEG8|lncRNA|chr14:100947033:100947079:+	0	+
#Deleted in new
chr14	100947033	100947116	ENSG00000225746.9|MEG8|lncRNA|chr14:100947033:100947116:+	0	+
#Deleted in new
chr14	100947033	100947194	ENSG00000258399.7|AL117190.1|lncRNA|chr14:100947033:100947194:+	0	+
#Deleted in new
chr14	100947033	100947207	ENSG00000225746.9|MEG8|lncRNA|chr14:100947033:100947207:+	0	+
#Deleted in new
chr14	100947082	100947116	ENSG00000225746.9|MEG8|lncRNA|chr14:100947082:100947116:+	0	+
#Deleted in new
chr14	100948977	100949039	ENSG00000225746.9|MEG8|lncRNA|chr14:100948977:100949039:+	0	+
#Deleted in new
chr14	100949049	100949064	ENSG00000225746.9|MEG8|lncRNA|chr14:100949049:100949064:+	0	+
#Deleted in new
chr14	100951431	100951494	ENSG00000225746.9|MEG8|lncRNA|chr14:100951431:100951494:+	0	+
#Deleted in new
chr14	100951443	100951494	ENSG00000225746.9|MEG8|lncRNA|chr14:100951443:100951494:+	0	+
#Deleted in new
chr14	100952420	100952752	ENSG00000225746.9|MEG8|lncRNA|chr14:100952420:100952752:+	0	+
#Deleted in new
chr14	100954607	100955006	ENSG00000225746.9|MEG8|lncRNA|chr14:100954607:100955006:+	0	+
#Deleted in new
chr14	100954921	100955006	ENSG00000225746.9|MEG8|lncRNA|chr14:100954921:100955006:+	0	+
#Deleted in new
chr14	100958261	100958343	ENSG00000225746.9|MEG8|lncRNA|chr14:100958261:100958343:+	0	+
#Deleted in new
chr14	100958261	100958550	ENSG00000225746.9|MEG8|lncRNA|chr14:100958261:100958550:+	0	+
#Deleted in new
chr14	100959801	100960179	ENSG00000225746.9|MEG8|lncRNA|chr14:100959801:100960179:+	0	+
#Deleted in new
chr14	100959801	100960199	ENSG00000225746.9|MEG8|lncRNA|chr14:100959801:100960199:+	0	+
#Deleted in new
chr14	100960060	100960179	ENSG00000225746.9|MEG8|lncRNA|chr14:100960060:100960179:+	0	+
#Deleted in new
chr14	100960060	100960219	ENSG00000225746.9|MEG8|lncRNA|chr14:100960060:100960219:+	0	+
#Partially deleted in new
chr14	100960508	100961244	ENSG00000225746.9|MEG8|lncRNA|chr14:100960508:100961244:+	0	+
#Deleted in new
chr14	100963964	100964000	ENSG00000225746.9|MEG8|lncRNA|chr14:100963964:100964000:+	0	+
#Deleted in new
chr14	100964352	100964439	ENSG00000225746.9|MEG8|lncRNA|chr14:100964352:100964439:+	0	+
#Partially deleted in new
chr14	100965679	100965766	ENSG00000225746.9|MEG8|lncRNA|chr14:100965679:100965766:+	0	+
#Deleted in new
chr14	100967638	100967786	ENSG00000225746.9|MEG8|lncRNA|chr14:100967638:100967786:+	0	+
#Deleted in new
chr14	100967651	100967786	ENSG00000225746.9|MEG8|lncRNA|chr14:100967651:100967786:+	0	+
#Deleted in new
chr14	100968647	100968724	ENSG00000225746.9|MEG8|lncRNA|chr14:100968647:100968724:+	0	+
#Deleted in new
chr14	100969458	100969545	ENSG00000225746.9|MEG8|lncRNA|chr14:100969458:100969545:+	0	+
#Deleted in new
chr14	100974125	100974203	ENSG00000225746.9|MEG8|lncRNA|chr14:100974125:100974203:+	0	+
#Deleted in new
chr14	100975410	100975496	ENSG00000225746.9|MEG8|lncRNA|chr14:100975410:100975496:+	0	+
#Deleted in new
chr14	100980576	100980663	ENSG00000225746.9|MEG8|lncRNA|chr14:100980576:100980663:+	0	+
#Deleted in new
chr14	100984347	100984434	ENSG00000225746.9|MEG8|lncRNA|chr14:100984347:100984434:+	0	+
#Deleted in new
chr14	100984385	100984434	ENSG00000225746.9|MEG8|lncRNA|chr14:100984385:100984434:+	0	+
#Partially deleted in new
chr14	100986618	100986706	ENSG00000225746.9|MEG8|lncRNA|chr14:100986618:100986706:+	0	+
#Partially deleted in new
chr14	100986618	100986938	ENSG00000225746.9|MEG8|lncRNA|chr14:100986618:100986938:+	0	+
#Partially deleted in new
chr14	100988708	100988790	ENSG00000225746.9|MEG8|lncRNA|chr14:100988708:100988790:+	0	+
#Deleted in new
chr14	100991490	100991565	ENSG00000225746.9|MEG8|lncRNA|chr14:100991490:100991565:+	0	+
#Deleted in new
chr14	100993834	100993907	ENSG00000225746.9|MEG8|lncRNA|chr14:100993834:100993907:+	0	+
#Deleted in new
chr14	100996885	100996916	ENSG00000225746.9|MEG8|lncRNA|chr14:100996885:100996916:+	0	+
#Deleted in new
chr14	100997486	100997546	ENSG00000225746.9|MEG8|lncRNA|chr14:100997486:100997546:+	0	+
#Deleted in new
chr14	100997486	100997552	ENSG00000225746.9|MEG8|lncRNA|chr14:100997486:100997552:+	0	+
#Deleted in new
chr14	101006021	101006257	ENSG00000225746.9|MEG8|lncRNA|chr14:101006021:101006257:+	0	+
#Deleted in new
chr14	101009557	101009570	ENSG00000225746.9|MEG8|lncRNA|chr14:101009557:101009570:+	0	+
#Deleted in new
chr14	101051066	101051269	ENSG00000258861.1|MIR381HG|lncRNA|chr14:101051066:101051269:+	0	+
#Deleted in new
chr14	101051601	101051795	ENSG00000258861.1|MIR381HG|lncRNA|chr14:101051601:101051795:+	0	+
#Deleted in new
chr14	101069910	101070055	ENSG00000223403.3|MEG9|lncRNA|chr14:101069910:101070055:+	0	+
#Partially deleted in new
chr14	101073952	101074129	ENSG00000230805.6|AL132709.1|lncRNA|chr14:101073952:101074129:-	0	-
#Deleted in new
chr14	101074480	101074561	ENSG00000230805.6|AL132709.1|lncRNA|chr14:101074480:101074561:-	0	-
#Deleted in new
chr14	101076304	101076333	ENSG00000230805.6|AL132709.1|lncRNA|chr14:101076304:101076333:-	0	-
#Deleted in new
chr14	101076533	101076706	ENSG00000230805.6|AL132709.1|lncRNA|chr14:101076533:101076706:-	0	-
#Deleted in new
chr14	101076533	101076769	ENSG00000230805.6|AL132709.1|lncRNA|chr14:101076533:101076769:-	0	-
#Deleted in new
chr14	101076589	101076706	ENSG00000230805.6|AL132709.1|lncRNA|chr14:101076589:101076706:-	0	-
#Deleted in new
chr14	101077105	101077539	ENSG00000230805.6|AL132709.1|lncRNA|chr14:101077105:101077539:-	0	-
#Deleted in new
chr14	101077571	101077671	ENSG00000230805.6|AL132709.1|lncRNA|chr14:101077571:101077671:-	0	-
#Deleted in new
chr14	101077571	101077675	ENSG00000230805.6|AL132709.1|lncRNA|chr14:101077571:101077675:-	0	-
#Deleted in new
chr14	101077772	101077910	ENSG00000230805.6|AL132709.1|lncRNA|chr14:101077772:101077910:-	0	-
#Deleted in new
chr14	101120855	101121144	ENSG00000259004.1|LINC02285|lncRNA|chr14:101120855:101121144:+	0	+
#Deleted in new
chr14	101257331	101257831	ENSG00000258497.1|AL359682.1|lncRNA|chr14:101257331:101257831:+	0	+
#Deleted in new
chr14	101276328	101278318	ENSG00000258497.1|AL359682.1|lncRNA|chr14:101276328:101278318:+	0	+
#Deleted in new
chr14	101332515	101332863	ENSG00000258460.1|AL355096.1|lncRNA|chr14:101332515:101332863:-	0	-
#Partially deleted in new
chr14	101405986	101406224	ENSG00000259023.2|LINC00524|lncRNA|chr14:101405986:101406224:-	0	-
#Deleted in new
chr14	101447641	101447659	ENSG00000259166.1|AL049836.2|lncRNA|chr14:101447641:101447659:+	0	+
#Deleted in new
chr14	101552220	101552754	ENSG00000258498.8|DIO3OS|lncRNA|chr14:101552220:101552754:-	0	-
#Deleted in new
chr14	101552222	101552754	ENSG00000258498.8|DIO3OS|lncRNA|chr14:101552222:101552754:-	0	-
#Partially deleted in new
chr14	101552222	101554242	ENSG00000258498.8|DIO3OS|lncRNA|chr14:101552222:101554242:-	0	-
#Deleted in new
chr14	101632412	101632530	ENSG00000258919.1|AL049836.1|lncRNA|chr14:101632412:101632530:-	0	-
#Partially deleted in new
chr14	101634453	101634679	ENSG00000258404.1|LINC02320|lncRNA|chr14:101634453:101634679:-	0	-
#Deleted in new
chr14	101635315	101635488	ENSG00000258404.1|LINC02320|lncRNA|chr14:101635315:101635488:-	0	-
#Deleted in new
chr14	101730436	101730487	ENSG00000258512.1|LINC00239|lncRNA|chr14:101730436:101730487:+	0	+
#Deleted in new
chr14	101731053	101731108	ENSG00000258404.1|LINC02320|lncRNA|chr14:101731053:101731108:-	0	-
#Deleted in new
chr14	101731787	101731976	ENSG00000258512.1|LINC00239|lncRNA|chr14:101731787:101731976:+	0	+
#Deleted in new
chr14	101789680	101789896	ENSG00000078304.19|PPP2R5C|pc|chr14:101789680:101789896:+	0	+
#Partially deleted in new
chr14	101796554	101796897	ENSG00000259088.1|AL137779.2|lncRNA|chr14:101796554:101796897:-	0	-
#Deleted in new
chr14	101831700	101831804	ENSG00000078304.19|PPP2R5C|pc|chr14:101831700:101831804:+	0	+
#Deleted in new
chr14	101833434	101833507	ENSG00000256705.3|AL137779.1|lncRNA|chr14:101833434:101833507:-	0	-
#Deleted in new
chr14	101839005	101839531	ENSG00000256705.3|AL137779.1|lncRNA|chr14:101839005:101839531:-	0	-
#Partially deleted in new
chr14	101879221	101879363	ENSG00000078304.19|PPP2R5C|pc|chr14:101879221:101879363:+	0	+
#Deleted in new
chr14	101921092	101921382	ENSG00000078304.19|PPP2R5C|pc|chr14:101921092:101921382:+	0	+
#Partially deleted in new
chr14	101948346	101949425	ENSG00000271780.1|AL118558.3|lncRNA|chr14:101948346:101949425:+	0	+
#Deleted in new
chr14	101952415	101953063	ENSG00000272444.1|AL118558.4|lncRNA|chr14:101952415:101953063:+	0	+
#Partially deleted in new
chr14	102036646	102036769	ENSG00000258959.1|AL118558.1|lncRNA|chr14:102036646:102036769:-	0	-
#Deleted in new
chr14	102036668	102036769	ENSG00000258959.1|AL118558.1|lncRNA|chr14:102036668:102036769:-	0	-
#Deleted in new
chr14	102037492	102037598	ENSG00000197102.10|DYNC1H1|pc|chr14:102037492:102037598:+	0	+
#Deleted in new
chr14	102043361	102043697	ENSG00000197102.10|DYNC1H1|pc|chr14:102043361:102043697:+	0	+
#Deleted in new
chr14	102101874	102102085	ENSG00000080824.18|HSP90AA1|pc|chr14:102101874:102102085:-	0	-
#Deleted in new
chr14	102101937	102102082	ENSG00000080824.18|HSP90AA1|pc|chr14:102101937:102102082:-	0	-
#Deleted in new
chr14	102157258	102157320	ENSG00000140153.17|WDR20|pc|chr14:102157258:102157320:+	0	+
#Deleted in new
chr14	102167405	102167666	ENSG00000140153.17|WDR20|pc|chr14:102167405:102167666:+	0	+
#Deleted in new
chr14	102171380	102171510	ENSG00000140153.17|WDR20|pc|chr14:102171380:102171510:+	0	+
#Deleted in new
chr14	102178911	102178976	ENSG00000140153.17|WDR20|pc|chr14:102178911:102178976:+	0	+
#Deleted in new
chr14	102178941	102178976	ENSG00000140153.17|WDR20|pc|chr14:102178941:102178976:+	0	+
#Partially deleted in new
chr14	102193462	102193475	ENSG00000140153.17|WDR20|pc|chr14:102193462:102193475:+	0	+
#Deleted in new
chr14	102197754	102197847	ENSG00000140153.17|WDR20|pc|chr14:102197754:102197847:+	0	+
#Deleted in new
chr14	102197754	102197979	ENSG00000140153.17|WDR20|pc|chr14:102197754:102197979:+	0	+
#Deleted in new
chr14	102198302	102198429	ENSG00000140153.17|WDR20|pc|chr14:102198302:102198429:+	0	+
#Deleted in new
chr14	102224499	102224794	ENSG00000080823.22|MOK|pc|chr14:102224499:102224794:-	0	-
#Deleted in new
chr14	102224600	102224847	ENSG00000140153.17|WDR20|pc|chr14:102224600:102224847:+	0	+
#Deleted in new
chr14	102224655	102224794	ENSG00000080823.22|MOK|pc|chr14:102224655:102224794:-	0	-
#Partially deleted in new
chr14	102225094	102226408	ENSG00000080823.22|MOK|pc|chr14:102225094:102226408:-	0	-
#Deleted in new
chr14	102225945	102226408	ENSG00000080823.22|MOK|pc|chr14:102225945:102226408:-	0	-
#Deleted in new
chr14	102226139	102226408	ENSG00000080823.22|MOK|pc|chr14:102226139:102226408:-	0	-
#Partially deleted in new
chr14	102233687	102234153	ENSG00000080823.22|MOK|pc|chr14:102233687:102234153:-	0	-
#Deleted in new
chr14	102234956	102235063	ENSG00000080823.22|MOK|pc|chr14:102234956:102235063:-	0	-
#Deleted in new
chr14	102235364	102235401	ENSG00000080823.22|MOK|pc|chr14:102235364:102235401:-	0	-
#Deleted in new
chr14	102235364	102235424	ENSG00000080823.22|MOK|pc|chr14:102235364:102235424:-	0	-
#Deleted in new
chr14	102235364	102235435	ENSG00000080823.22|MOK|pc|chr14:102235364:102235435:-	0	-
#Deleted in new
chr14	102235364	102235569	ENSG00000080823.22|MOK|pc|chr14:102235364:102235569:-	0	-
#Deleted in new
chr14	102238021	102238098	ENSG00000080823.22|MOK|pc|chr14:102238021:102238098:-	0	-
#Deleted in new
chr14	102238317	102238364	ENSG00000080823.22|MOK|pc|chr14:102238317:102238364:-	0	-
#Deleted in new
chr14	102238317	102238446	ENSG00000080823.22|MOK|pc|chr14:102238317:102238446:-	0	-
#Deleted in new
chr14	102240451	102240597	ENSG00000080823.22|MOK|pc|chr14:102240451:102240597:-	0	-
#Deleted in new
chr14	102240451	102240607	ENSG00000080823.22|MOK|pc|chr14:102240451:102240607:-	0	-
#Deleted in new
chr14	102240451	102240611	ENSG00000080823.22|MOK|pc|chr14:102240451:102240611:-	0	-
#Deleted in new
chr14	102240451	102240621	ENSG00000080823.22|MOK|pc|chr14:102240451:102240621:-	0	-
#Deleted in new
chr14	102246056	102246159	ENSG00000080823.22|MOK|pc|chr14:102246056:102246159:-	0	-
#Deleted in new
chr14	102246056	102246247	ENSG00000080823.22|MOK|pc|chr14:102246056:102246247:-	0	-
#Deleted in new
chr14	102247394	102247464	ENSG00000080823.22|MOK|pc|chr14:102247394:102247464:-	0	-
#Deleted in new
chr14	102260590	102260672	ENSG00000080823.22|MOK|pc|chr14:102260590:102260672:-	0	-
#Deleted in new
chr14	102277298	102277450	ENSG00000080823.22|MOK|pc|chr14:102277298:102277450:-	0	-
#Deleted in new
chr14	102278605	102278694	ENSG00000080823.22|MOK|pc|chr14:102278605:102278694:-	0	-
#Deleted in new
chr14	102280673	102280824	ENSG00000080823.22|MOK|pc|chr14:102280673:102280824:-	0	-
#Partially deleted in new
chr14	102319297	102319518	ENSG00000022976.15|ZNF839|pc|chr14:102319297:102319518:+	0	+
#Deleted in new
chr14	102336634	102336719	ENSG00000022976.15|ZNF839|pc|chr14:102336634:102336719:+	0	+
#Deleted in new
chr14	102336916	102337726	ENSG00000022976.15|ZNF839|pc|chr14:102336916:102337726:+	0	+
#Deleted in new
chr14	102343634	102344389	ENSG00000100865.14|CINP|pc|chr14:102343634:102344389:-	0	-
#Deleted in new
chr14	102347036	102347455	ENSG00000100865.14|CINP|pc|chr14:102347036:102347455:-	0	-
#Deleted in new
chr14	102348008	102348147	ENSG00000100865.14|CINP|pc|chr14:102348008:102348147:-	0	-
#Duplicated in new
chr14	102348278	102348759	ENSG00000100865.14|CINP|pc|chr14:102348278:102348759:-	0	-
#Duplicated in new
chr14	102348281	102348759	ENSG00000100865.14|CINP|pc|chr14:102348281:102348759:-	0	-
#Deleted in new
chr14	102352418	102352555	ENSG00000100865.14|CINP|pc|chr14:102352418:102352555:-	0	-
#Deleted in new
chr14	102545253	102545576	ENSG00000259230.1|LINC02323|lncRNA|chr14:102545253:102545576:+	0	+
#Deleted in new
chr14	102550345	102550508	ENSG00000259230.1|LINC02323|lncRNA|chr14:102550345:102550508:+	0	+
#Deleted in new
chr14	102554709	102555826	ENSG00000259230.1|LINC02323|lncRNA|chr14:102554709:102555826:+	0	+
#Partially deleted in new
chr14	102809007	102809129	ENSG00000131323.14|TRAF3|pc|chr14:102809007:102809129:+	0	+
#Deleted in new
chr14	102810663	102810746	ENSG00000131323.14|TRAF3|pc|chr14:102810663:102810746:+	0	+
#Deleted in new
chr14	102895072	102895199	ENSG00000131323.14|TRAF3|pc|chr14:102895072:102895199:+	0	+
#Deleted in new
chr14	102936941	102937177	ENSG00000259515.1|AL117209.1|lncRNA|chr14:102936941:102937177:+	0	+
#Deleted in new
chr14	102945173	102945331	ENSG00000198752.10|CDC42BPB|pc|chr14:102945173:102945331:-	0	-
#Deleted in new
chr14	103120846	103121031	ENSG00000259717.1|LINC00677|lncRNA|chr14:103120846:103121031:-	0	-
#Deleted in new
chr14	103120852	103121031	ENSG00000259717.1|LINC00677|lncRNA|chr14:103120852:103121031:-	0	-
#Partially deleted in new
chr14	103124374	103124506	ENSG00000185215.8|TNFAIP2|pc|chr14:103124374:103124506:+	0	+
#Partially deleted in new
chr14	103187220	103188270	ENSG00000251533.2|LINC00605|lncRNA|chr14:103187220:103188270:-	0	-
#Deleted in new
chr14	103188376	103188447	ENSG00000251533.2|LINC00605|lncRNA|chr14:103188376:103188447:-	0	-
#Deleted in new
chr14	103188591	103189028	ENSG00000251533.2|LINC00605|lncRNA|chr14:103188591:103189028:-	0	-
#Deleted in new
chr14	103333543	103333663	ENSG00000100664.10|EIF5|pc|chr14:103333543:103333663:+	0	+
#Deleted in new
chr14	103417272	103417323	ENSG00000075413.17|MARK3|pc|chr14:103417272:103417323:+	0	+
#Deleted in new
chr14	103417327	103417461	ENSG00000075413.17|MARK3|pc|chr14:103417327:103417461:+	0	+
#Deleted in new
chr14	103429192	103429373	ENSG00000075413.17|MARK3|pc|chr14:103429192:103429373:+	0	+
#Deleted in new
chr14	103441469	103441563	ENSG00000075413.17|MARK3|pc|chr14:103441469:103441563:+	0	+
#Deleted in new
chr14	103458726	103458795	ENSG00000075413.17|MARK3|pc|chr14:103458726:103458795:+	0	+
#Partially deleted in new
chr14	103467078	103467685	ENSG00000075413.17|MARK3|pc|chr14:103467078:103467685:+	0	+
#Deleted in new
chr14	103469202	103469303	ENSG00000075413.17|MARK3|pc|chr14:103469202:103469303:+	0	+
#Deleted in new
chr14	103553420	103553862	ENSG00000258851.1|AL139300.2|lncRNA|chr14:103553420:103553862:+	0	+
#Partially deleted in new
chr14	103561766	103561877	ENSG00000258851.1|AL139300.2|lncRNA|chr14:103561766:103561877:+	0	+
#Partially deleted in new
chr14	103563189	103563379	ENSG00000256053.7|APOPT1|pc|chr14:103563189:103563379:+	0	+
#Partially deleted in new
chr14	103563214	103563379	ENSG00000256053.7|APOPT1|pc|chr14:103563214:103563379:+	0	+
#Deleted in new
chr14	103574389	103574732	ENSG00000256053.7|APOPT1|pc|chr14:103574389:103574732:+	0	+
#Deleted in new
chr14	103579370	103579491	ENSG00000256053.7|APOPT1|pc|chr14:103579370:103579491:+	0	+
#Deleted in new
chr14	103581568	103581656	ENSG00000256053.7|APOPT1|pc|chr14:103581568:103581656:+	0	+
#Deleted in new
chr14	103588001	103588283	ENSG00000256053.7|APOPT1|pc|chr14:103588001:103588283:+	0	+
#Deleted in new
chr14	103588233	103588283	ENSG00000256053.7|APOPT1|pc|chr14:103588233:103588283:+	0	+
#Partially deleted in new
chr14	103590180	103590525	ENSG00000256053.7|APOPT1|pc|chr14:103590180:103590525:+	0	+
#Partially deleted in new
chr14	103590180	103590526	ENSG00000256053.7|APOPT1|pc|chr14:103590180:103590526:+	0	+
#Partially deleted in new
chr14	103590180	103590527	ENSG00000256053.7|APOPT1|pc|chr14:103590180:103590527:+	0	+
#Partially deleted in new
chr14	103590180	103590620	ENSG00000256053.7|APOPT1|pc|chr14:103590180:103590620:+	0	+
#Partially deleted in new
chr14	103590180	103592187	ENSG00000256053.7|APOPT1|pc|chr14:103590180:103592187:+	0	+
#Deleted in new
chr14	103607203	103607523	ENSG00000256053.7|APOPT1|pc|chr14:103607203:103607523:+	0	+
#Partially deleted in new
chr14	103629176	103629494	ENSG00000126214.21|KLC1|pc|chr14:103629176:103629494:+	0	+
#Partially deleted in new
chr14	103629202	103629494	ENSG00000126214.21|KLC1|pc|chr14:103629202:103629494:+	0	+
#Partially deleted in new
chr14	103629210	103629494	ENSG00000126214.21|KLC1|pc|chr14:103629210:103629494:+	0	+
#Partially deleted in new
chr14	103629226	103629494	ENSG00000126214.21|KLC1|pc|chr14:103629226:103629494:+	0	+
#Partially deleted in new
chr14	103629236	103629494	ENSG00000126214.21|KLC1|pc|chr14:103629236:103629494:+	0	+
#Partially deleted in new
chr14	103629240	103629494	ENSG00000126214.21|KLC1|pc|chr14:103629240:103629494:+	0	+
#Partially deleted in new
chr14	103629296	103629494	ENSG00000126214.21|KLC1|pc|chr14:103629296:103629494:+	0	+
#Deleted in new
chr14	103682361	103682607	ENSG00000246451.2|AL049840.1|lncRNA|chr14:103682361:103682607:-	0	-
#Deleted in new
chr14	103682857	103684015	ENSG00000246451.2|AL049840.1|lncRNA|chr14:103682857:103684015:-	0	-
#Deleted in new
chr14	103687575	103688127	ENSG00000270108.1|AL049840.5|lncRNA|chr14:103687575:103688127:+	0	+
#Deleted in new
chr14	103694515	103695050	ENSG00000269910.1|AL049840.2|lncRNA|chr14:103694515:103695050:-	0	-
#Deleted in new
chr14	103694559	103695170	ENSG00000269940.1|AL049840.3|lncRNA|chr14:103694559:103695170:+	0	+
#Partially deleted in new
chr14	103696352	103697163	ENSG00000269958.1|AL049840.4|lncRNA|chr14:103696352:103697163:+	0	+
#Partially deleted in new
chr14	103697608	103699017	ENSG00000126215.13|XRCC3|pc|chr14:103697608:103699017:-	0	-
#Partially deleted in new
chr14	103697616	103699017	ENSG00000126215.13|XRCC3|pc|chr14:103697616:103699017:-	0	-
#Partially deleted in new
chr14	103697617	103699017	ENSG00000126215.13|XRCC3|pc|chr14:103697617:103699017:-	0	-
#Partially deleted in new
chr14	103701200	103714249	ENSG00000126214.21|KLC1|pc|chr14:103701200:103714249:+	0	+
#Deleted in new
chr14	103702015	103702582	ENSG00000126215.13|XRCC3|pc|chr14:103702015:103702582:-	0	-
#Deleted in new
chr14	103704395	103706042	ENSG00000126215.13|XRCC3|pc|chr14:103704395:103706042:-	0	-
#Deleted in new
chr14	103706206	103706375	ENSG00000126215.13|XRCC3|pc|chr14:103706206:103706375:-	0	-
#Deleted in new
chr14	103706331	103706375	ENSG00000126215.13|XRCC3|pc|chr14:103706331:103706375:-	0	-
#Partially deleted in new
chr14	103707002	103708855	ENSG00000126215.13|XRCC3|pc|chr14:103707002:103708855:-	0	-
#Deleted in new
chr14	103711465	103711567	ENSG00000126215.13|XRCC3|pc|chr14:103711465:103711567:-	0	-
#Deleted in new
chr14	103711465	103711661	ENSG00000126215.13|XRCC3|pc|chr14:103711465:103711661:-	0	-
#Deleted in new
chr14	103711465	103712104	ENSG00000126215.13|XRCC3|pc|chr14:103711465:103712104:-	0	-
#Deleted in new
chr14	103712874	103712931	ENSG00000126215.13|XRCC3|pc|chr14:103712874:103712931:-	0	-
#Deleted in new
chr14	103712874	103712941	ENSG00000126215.13|XRCC3|pc|chr14:103712874:103712941:-	0	-
#Deleted in new
chr14	103712874	103712968	ENSG00000126215.13|XRCC3|pc|chr14:103712874:103712968:-	0	-
#Deleted in new
chr14	103714104	103714213	ENSG00000126215.13|XRCC3|pc|chr14:103714104:103714213:-	0	-
#Deleted in new
chr14	103714104	103714250	ENSG00000126215.13|XRCC3|pc|chr14:103714104:103714250:-	0	-
#Partially deleted in new
chr14	103724508	103727914	ENSG00000100711.13|ZFYVE21|pc|chr14:103724508:103727914:+	0	+
#Deleted in new
chr14	103743890	103744015	ENSG00000088808.16|PPP1R13B|pc|chr14:103743890:103744015:-	0	-
#Deleted in new
chr14	103763862	103764479	ENSG00000088808.16|PPP1R13B|pc|chr14:103763862:103764479:-	0	-
#Deleted in new
chr14	103794576	103794663	ENSG00000088808.16|PPP1R13B|pc|chr14:103794576:103794663:-	0	-
#Partially deleted in new
chr14	103847007	103847063	ENSG00000088808.16|PPP1R13B|pc|chr14:103847007:103847063:-	0	-
#Deleted in new
chr14	103854295	103854402	ENSG00000258735.1|LINC00637|lncRNA|chr14:103854295:103854402:+	0	+
#Deleted in new
chr14	103854365	103854544	ENSG00000258534.1|AL132712.1|lncRNA|chr14:103854365:103854544:-	0	-
#Deleted in new
chr14	103856123	103858049	ENSG00000258735.1|LINC00637|lncRNA|chr14:103856123:103858049:+	0	+
#Deleted in new
chr14	103877394	103877478	ENSG00000258914.1|AL132712.2|lncRNA|chr14:103877394:103877478:+	0	+
#Partially deleted in new
chr14	103913218	103913984	ENSG00000156411.9|C14orf2|pc|chr14:103913218:103913984:-	0	-
#Partially deleted in new
chr14	103913256	103913984	ENSG00000156411.9|C14orf2|pc|chr14:103913256:103913984:-	0	-
#Partially deleted in new
chr14	103913957	103914633	ENSG00000156411.9|C14orf2|pc|chr14:103913957:103914633:-	0	-
#Deleted in new
chr14	103914478	103914633	ENSG00000156411.9|C14orf2|pc|chr14:103914478:103914633:-	0	-
#Deleted in new
chr14	103928115	103928269	ENSG00000156411.9|C14orf2|pc|chr14:103928115:103928269:-	0	-
#Deleted in new
chr14	103928816	103928923	ENSG00000156414.18|TDRD9|pc|chr14:103928816:103928923:+	0	+
#Deleted in new
chr14	103939799	103939889	ENSG00000156414.18|TDRD9|pc|chr14:103939799:103939889:+	0	+
#Deleted in new
chr14	104049864	104049937	ENSG00000156414.18|TDRD9|pc|chr14:104049864:104049937:+	0	+
#Deleted in new
chr1	41041310	41041565	ENSG00000010803.16|SCMH1|pc|chr1:41041310:41041565:-	0	-
#Deleted in new
chr1	41041421	41041565	ENSG00000010803.16|SCMH1|pc|chr1:41041421:41041565:-	0	-
#Deleted in new
chr14	104243096	104243747	ENSG00000258913.1|C14orf144|lncRNA|chr14:104243096:104243747:+	0	+
#Deleted in new
chr14	104275343	104275629	ENSG00000258913.1|C14orf144|lncRNA|chr14:104275343:104275629:+	0	+
#Deleted in new
chr14	104287485	104287553	ENSG00000258913.1|C14orf144|lncRNA|chr14:104287485:104287553:+	0	+
#Deleted in new
chr14	104287833	104288069	ENSG00000258913.1|C14orf144|lncRNA|chr14:104287833:104288069:+	0	+
#Deleted in new
chr14	104376529	104376696	ENSG00000258598.1|AL512357.1|lncRNA|chr14:104376529:104376696:-	0	-
#Deleted in new
chr14	104377540	104377820	ENSG00000258598.1|AL512357.1|lncRNA|chr14:104377540:104377820:-	0	-
#Deleted in new
chr14	104653547	104653957	ENSG00000258736.1|AL583722.3|lncRNA|chr14:104653547:104653957:-	0	-
#Deleted in new
chr14	104653598	104653771	ENSG00000258736.1|AL583722.3|lncRNA|chr14:104653598:104653771:-	0	-
#Deleted in new
chr14	104655474	104655567	ENSG00000258736.1|AL583722.3|lncRNA|chr14:104655474:104655567:-	0	-
#Deleted in new
chr14	104655474	104655787	ENSG00000258736.1|AL583722.3|lncRNA|chr14:104655474:104655787:-	0	-
#Deleted in new
chr14	104661119	104664109	ENSG00000260792.1|LINC02280|lncRNA|chr14:104661119:104664109:-	0	-
#Deleted in new
chr14	104664732	104665558	ENSG00000260792.1|LINC02280|lncRNA|chr14:104664732:104665558:-	0	-
#Deleted in new
chr14	104681145	104681582	ENSG00000256050.2|AL583722.1|lncRNA|chr14:104681145:104681582:+	0	+
#Deleted in new
chr14	104684062	104684932	ENSG00000256050.2|AL583722.1|lncRNA|chr14:104684062:104684932:+	0	+
#Partially deleted in new
chr14	104703915	104704809	ENSG00000203485.12|INF2|pc|chr14:104703915:104704809:+	0	+
#Deleted in new
chr14	104717562	104717646	ENSG00000203485.12|INF2|pc|chr14:104717562:104717646:+	0	+
#Partially deleted in new
chr14	104718794	104722535	ENSG00000203485.12|INF2|pc|chr14:104718794:104722535:+	0	+
#Deleted in new
chr14	104729733	104729895	ENSG00000185100.10|ADSSL1|pc|chr14:104729733:104729895:+	0	+
#Deleted in new
chr14	104729733	104730213	ENSG00000185100.10|ADSSL1|pc|chr14:104729733:104730213:+	0	+
#Deleted in new
chr14	104729892	104730213	ENSG00000185100.10|ADSSL1|pc|chr14:104729892:104730213:+	0	+
#Partially deleted in new
chr14	104737142	104738438	ENSG00000185100.10|ADSSL1|pc|chr14:104737142:104738438:+	0	+
#Deleted in new
chr14	104753717	104753888	ENSG00000184990.12|SIVA1|pc|chr14:104753717:104753888:+	0	+
#Split in new
chr14	104756603	104757479	ENSG00000184990.12|SIVA1|pc|chr14:104756603:104757479:+	0	+
#Deleted in new
chr14	104757274	104757312	ENSG00000184990.12|SIVA1|pc|chr14:104757274:104757312:+	0	+
#Deleted in new
chr14	104766789	104766897	ENSG00000184990.12|SIVA1|pc|chr14:104766789:104766897:+	0	+
#Deleted in new
chr14	104767863	104768007	ENSG00000184990.12|SIVA1|pc|chr14:104767863:104768007:+	0	+
#Deleted in new
chr14	104768391	104768494	ENSG00000184990.12|SIVA1|pc|chr14:104768391:104768494:+	0	+
#Deleted in new
chr14	104786290	104786367	ENSG00000142208.15|AKT1|pc|chr14:104786290:104786367:-	0	-
#Deleted in new
chr14	104815448	104815753	ENSG00000279140.1|AL590326.2|lncRNA|chr14:104815448:104815753:-	0	-
#Deleted in new
chr14	104821200	104823718	ENSG00000258701.1|LINC00638|lncRNA|chr14:104821200:104823718:+	0	+
#Deleted in new
chr14	104842662	104845916	ENSG00000258811.1|AL583810.2|lncRNA|chr14:104842662:104845916:+	0	+
#Split in new
chr14	104857791	104858836	ENSG00000258593.2|AL583810.1|lncRNA|chr14:104857791:104858836:-	0	-
#Deleted in new
chr14	104904341	104904598	ENSG00000259067.1|AL583810.3|lncRNA|chr14:104904341:104904598:+	0	+
#Deleted in new
chr14	104904731	104904990	ENSG00000259067.1|AL583810.3|lncRNA|chr14:104904731:104904990:+	0	+
#Deleted in new
chr14	104905136	104905204	ENSG00000259067.1|AL583810.3|lncRNA|chr14:104905136:104905204:+	0	+
#Deleted in new
chr14	104953880	104953904	ENSG00000185567.6|AHNAK2|pc|chr14:104953880:104953904:-	0	-
#Partially deleted in new
chr14	104989839	104991620	ENSG00000140104.13|C14orf79|pc|chr14:104989839:104991620:+	0	+
#Deleted in new
chr14	104999220	104999527	ENSG00000140104.13|C14orf79|pc|chr14:104999220:104999527:+	0	+
#Deleted in new
chr14	105053932	105054165	ENSG00000183484.11|GPR132|pc|chr14:105053932:105054165:-	0	-
#Deleted in new
chr14	105055386	105055791	ENSG00000183484.11|GPR132|pc|chr14:105055386:105055791:-	0	-
#Deleted in new
chr14	105055386	105056166	ENSG00000183484.11|GPR132|pc|chr14:105055386:105056166:-	0	-
#Deleted in new
chr14	105055390	105056166	ENSG00000183484.11|GPR132|pc|chr14:105055390:105056166:-	0	-
#Deleted in new
chr14	105057937	105058027	ENSG00000183484.11|GPR132|pc|chr14:105057937:105058027:-	0	-
#Deleted in new
chr14	105065378	105065430	ENSG00000183484.11|GPR132|pc|chr14:105065378:105065430:-	0	-
#Deleted in new
chr14	105065378	105065445	ENSG00000183484.11|GPR132|pc|chr14:105065378:105065445:-	0	-
#Deleted in new
chr14	105095190	105095768	ENSG00000257556.1|LINC02298|lncRNA|chr14:105095190:105095768:+	0	+
#Deleted in new
chr14	105095324	105095442	ENSG00000257556.1|LINC02298|lncRNA|chr14:105095324:105095442:+	0	+
#Deleted in new
chr14	105095539	105095699	ENSG00000257556.1|LINC02298|lncRNA|chr14:105095539:105095699:+	0	+
#Deleted in new
chr14	105095539	105095767	ENSG00000257556.1|LINC02298|lncRNA|chr14:105095539:105095767:+	0	+
#Deleted in new
chr14	105110346	105110807	ENSG00000280244.1|AL512356.3|lncRNA|chr14:105110346:105110807:-	0	-
#Deleted in new
chr14	105173480	105173697	ENSG00000183828.14|NUDT14|pc|chr14:105173480:105173697:-	0	-
#Partially deleted in new
chr14	105209285	105210588	ENSG00000185024.16|BRF1|pc|chr14:105209285:105210588:-	0	-
#Partially deleted in new
chr14	105209288	105210588	ENSG00000185024.16|BRF1|pc|chr14:105209288:105210588:-	0	-
#Deleted in new
chr14	105209428	105209650	ENSG00000185024.16|BRF1|pc|chr14:105209428:105209650:-	0	-
#Deleted in new
chr14	105209428	105209659	ENSG00000185024.16|BRF1|pc|chr14:105209428:105209659:-	0	-
#Deleted in new
chr14	105209495	105209659	ENSG00000185024.16|BRF1|pc|chr14:105209495:105209659:-	0	-
#Partially deleted in new
chr14	105212112	105213428	ENSG00000185024.16|BRF1|pc|chr14:105212112:105213428:-	0	-
#Partially deleted in new
chr14	105219150	105220130	ENSG00000185024.16|BRF1|pc|chr14:105219150:105220130:-	0	-
#Partially deleted in new
chr14	105226633	105228270	ENSG00000185024.16|BRF1|pc|chr14:105226633:105228270:-	0	-
#Partially deleted in new
chr14	105241264	105242605	ENSG00000185024.16|BRF1|pc|chr14:105241264:105242605:-	0	-
#Deleted in new
chr14	105246865	105247193	ENSG00000185024.16|BRF1|pc|chr14:105246865:105247193:-	0	-
#Deleted in new
chr14	105247070	105247193	ENSG00000185024.16|BRF1|pc|chr14:105247070:105247193:-	0	-
#Deleted in new
chr14	105247070	105247894	ENSG00000185024.16|BRF1|pc|chr14:105247070:105247894:-	0	-
#Partially deleted in new
chr14	105247287	105248539	ENSG00000185024.16|BRF1|pc|chr14:105247287:105248539:-	0	-
#Deleted in new
chr14	105336424	105336658	ENSG00000179364.13|PACS2|pc|chr14:105336424:105336658:+	0	+
#Deleted in new
chr14	105370417	105372918	ENSG00000279495.1|AL928654.5|lncRNA|chr14:105370417:105372918:+	0	+
#Partially deleted in new
chr14	105398578	105398635	ENSG00000226174.6|TEX22|pc|chr14:105398578:105398635:+	0	+
#Partially deleted in new
chr14	105398582	105398635	ENSG00000226174.6|TEX22|pc|chr14:105398582:105398635:+	0	+
#Deleted in new
chr14	105416883	105418309	ENSG00000251602.6|AL928654.2|lncRNA|chr14:105416883:105418309:-	0	-
#Deleted in new
chr14	105417580	105418309	ENSG00000251602.6|AL928654.2|lncRNA|chr14:105417580:105418309:-	0	-
#Deleted in new
chr14	105418681	105418816	ENSG00000251602.6|AL928654.2|lncRNA|chr14:105418681:105418816:-	0	-
#Deleted in new
chr14	105445666	105445852	ENSG00000182979.17|MTA1|pc|chr14:105445666:105445852:+	0	+
#Deleted in new
chr14	105454627	105454701	ENSG00000182979.17|MTA1|pc|chr14:105454627:105454701:+	0	+
#Deleted in new
chr14	105489854	105489985	ENSG00000185347.17|C14orf80|pc|chr14:105489854:105489985:+	0	+
#Deleted in new
chr14	105489862	105490043	ENSG00000185347.17|C14orf80|pc|chr14:105489862:105490043:+	0	+
#Deleted in new
chr14	105489875	105489985	ENSG00000185347.17|C14orf80|pc|chr14:105489875:105489985:+	0	+
#Deleted in new
chr14	105490123	105490237	ENSG00000185347.17|C14orf80|pc|chr14:105490123:105490237:+	0	+
#Deleted in new
chr14	105490182	105490237	ENSG00000185347.17|C14orf80|pc|chr14:105490182:105490237:+	0	+
#Partially deleted in new
chr14	105491064	105491154	ENSG00000185347.17|C14orf80|pc|chr14:105491064:105491154:+	0	+
#Deleted in new
chr14	105890083	105890197	ENSG00000244620.1|AC246787.2|lncRNA|chr14:105890083:105890197:+	0	+
#Deleted in new
chr14	105894645	105894681	ENSG00000244620.1|AC246787.2|lncRNA|chr14:105894645:105894681:+	0	+
#Deleted in new
chr14	105894892	105894998	ENSG00000244620.1|AC246787.2|lncRNA|chr14:105894892:105894998:+	0	+
#Partially deleted in new
chr14	105895982	105896108	ENSG00000244620.1|AC246787.2|lncRNA|chr14:105895982:105896108:+	0	+
#Partially deleted in new
chr14	105895982	105896109	ENSG00000244620.1|AC246787.2|lncRNA|chr14:105895982:105896109:+	0	+
#Deleted in new
chr14	105896475	105896577	ENSG00000244620.1|AC246787.2|lncRNA|chr14:105896475:105896577:+	0	+
#Deleted in new
chr14	105917978	105918817	ENSG00000226777.7|FAM30A|lncRNA|chr14:105917978:105918817:+	0	+
#Deleted in new
chr14	105918435	105918514	ENSG00000226777.7|FAM30A|lncRNA|chr14:105918435:105918514:+	0	+
#Deleted in new
chr14	105918437	105918514	ENSG00000226777.7|FAM30A|lncRNA|chr14:105918437:105918514:+	0	+
#Deleted in new
chr14	105921062	105921248	ENSG00000226777.7|FAM30A|lncRNA|chr14:105921062:105921248:+	0	+
#Deleted in new
chr14	105921062	105921258	ENSG00000226777.7|FAM30A|lncRNA|chr14:105921062:105921258:+	0	+
#Deleted in new
chr14	105921092	105921258	ENSG00000226777.7|FAM30A|lncRNA|chr14:105921092:105921258:+	0	+
#Deleted in new
chr14	105921149	105921258	ENSG00000226777.7|FAM30A|lncRNA|chr14:105921149:105921258:+	0	+
#Deleted in new
chr14	105921487	105921562	ENSG00000226777.7|FAM30A|lncRNA|chr14:105921487:105921562:+	0	+
#Deleted in new
chr14	105922117	105922344	ENSG00000226777.7|FAM30A|lncRNA|chr14:105922117:105922344:+	0	+
#Deleted in new
chr14	105922198	105922344	ENSG00000226777.7|FAM30A|lncRNA|chr14:105922198:105922344:+	0	+
#Deleted in new
chr14	105922202	105922344	ENSG00000226777.7|FAM30A|lncRNA|chr14:105922202:105922344:+	0	+
#Deleted in new
chr14	105922540	105922639	ENSG00000226777.7|FAM30A|lncRNA|chr14:105922540:105922639:+	0	+
#Deleted in new
chr14	105922540	105922643	ENSG00000226777.7|FAM30A|lncRNA|chr14:105922540:105922643:+	0	+
#Deleted in new
chr14	105922540	105922666	ENSG00000226777.7|FAM30A|lncRNA|chr14:105922540:105922666:+	0	+
#Deleted in new
chr14	105922540	105922672	ENSG00000226777.7|FAM30A|lncRNA|chr14:105922540:105922672:+	0	+
#Deleted in new
chr14	105923014	105923122	ENSG00000226777.7|FAM30A|lncRNA|chr14:105923014:105923122:+	0	+
#Deleted in new
chr14	105924335	105932642	ENSG00000226777.7|FAM30A|lncRNA|chr14:105924335:105932642:+	0	+
#Deleted in new
chr14	106206602	106206724	ENSG00000271201.1|AC247036.1|lncRNA|chr14:106206602:106206724:+	0	+
#Deleted in new
chr14	106208304	106208571	ENSG00000271201.1|AC247036.1|lncRNA|chr14:106208304:106208571:+	0	+
#Deleted in new
chr14	106288043	106288372	ENSG00000276210.2|LINC00226|lncRNA|chr14:106288043:106288372:+	0	+
#Deleted in new
chr14	106288069	106288828	ENSG00000276210.2|LINC00226|lncRNA|chr14:106288069:106288828:+	0	+
#Deleted in new
chr14	106482438	106482637	ENSG00000270816.5|LINC00221|lncRNA|chr14:106482438:106482637:+	0	+
#Deleted in new
chr14	106482448	106482637	ENSG00000270816.5|LINC00221|lncRNA|chr14:106482448:106482637:+	0	+
#Deleted in new
chr14	106482467	106482637	ENSG00000270816.5|LINC00221|lncRNA|chr14:106482467:106482637:+	0	+
#Deleted in new
chr14	106488767	106488961	ENSG00000270816.5|LINC00221|lncRNA|chr14:106488767:106488961:+	0	+
#Deleted in new
chr14	106490382	106490483	ENSG00000270816.5|LINC00221|lncRNA|chr14:106490382:106490483:+	0	+
#Partially deleted in new
chr14	106494156	106495448	ENSG00000270816.5|LINC00221|lncRNA|chr14:106494156:106495448:+	0	+
#Deleted in new
chr14	106504325	106505072	ENSG00000270816.5|LINC00221|lncRNA|chr14:106504325:106505072:+	0	+
#Deleted in new
chr14	106506356	106506447	ENSG00000270816.5|LINC00221|lncRNA|chr14:106506356:106506447:+	0	+
#Deleted in new
chr14	106520611	106521073	ENSG00000270816.5|LINC00221|lncRNA|chr14:106520611:106521073:+	0	+
#Deleted in new
chr1	41162778	41163017	ENSG00000010803.16|SCMH1|pc|chr1:41162778:41163017:-	0	-
#Partially deleted in new
chr1	41242372	41242706	ENSG00000235358.1|AC093151.3|lncRNA|chr1:41242372:41242706:+	0	+
#Deleted in new
chr1	41263840	41264108	ENSG00000235358.1|AC093151.3|lncRNA|chr1:41263840:41264108:+	0	+
#Partially deleted in new
chr1	41535442	41535625	ENSG00000230881.1|AL445933.2|lncRNA|chr1:41535442:41535625:+	0	+
#Deleted in new
chr14	18555676	18556122	ENSG00000257959.1|CR383656.11|lncRNA|chr14:18555676:18556122:-	0	-
#Deleted in new
chr14	18596258	18596310	ENSG00000257959.1|CR383656.11|lncRNA|chr14:18596258:18596310:-	0	-
#Deleted in new
chr14	18633464	18633634	ENSG00000257504.1|LINC02297|lncRNA|chr14:18633464:18633634:-	0	-
#Deleted in new
chr1	41869546	41869630	ENSG00000127124.14|HIVEP3|pc|chr1:41869546:41869630:-	0	-
#Deleted in new
chr14	18920108	18920407	ENSG00000257891.1|AL929601.1|lncRNA|chr14:18920108:18920407:+	0	+
#Deleted in new
chr14	18921622	18921776	ENSG00000257891.1|AL929601.1|lncRNA|chr14:18921622:18921776:+	0	+
#Deleted in new
chr14	18929580	18929853	ENSG00000257891.1|AL929601.1|lncRNA|chr14:18929580:18929853:+	0	+
#Deleted in new
chr14	18929695	18929815	ENSG00000257891.1|AL929601.1|lncRNA|chr14:18929695:18929815:+	0	+
#Deleted in new
chr14	18931741	18931848	ENSG00000257891.1|AL929601.1|lncRNA|chr14:18931741:18931848:+	0	+
#Deleted in new
chr14	18934040	18934078	ENSG00000257891.1|AL929601.1|lncRNA|chr14:18934040:18934078:+	0	+
#Partially deleted in new
chr14	18944198	18944410	ENSG00000258265.1|AL929601.2|lncRNA|chr14:18944198:18944410:+	0	+
#Partially deleted in new
chr14	18967433	18968006	ENSG00000222036.7|POTEM|pc|chr14:18967433:18968006:+	0	+
#Deleted in new
chr14	18974760	18975016	ENSG00000222036.7|POTEM|pc|chr14:18974760:18975016:+	0	+
#Deleted in new
chr14	18980347	18980742	ENSG00000275563.1|AL929601.3|lncRNA|chr14:18980347:18980742:-	0	-
#Duplicated in new
chr14	18988254	18988421	ENSG00000222036.7|POTEM|pc|chr14:18988254:18988421:+	0	+
#Deleted in new
chr14	18992394	18992443	ENSG00000222036.7|POTEM|pc|chr14:18992394:18992443:+	0	+
#Duplicated in new
chr14	18998666	18999012	ENSG00000222036.7|POTEM|pc|chr14:18998666:18999012:+	0	+
#Deleted in new
chr14	19031760	19031826	ENSG00000258314.3|AL589182.1|lncRNA|chr14:19031760:19031826:+	0	+
#Deleted in new
chr14	19054340	19054711	ENSG00000258314.3|AL589182.1|lncRNA|chr14:19054340:19054711:+	0	+
#Deleted in new
chr14	19055389	19055446	ENSG00000258314.3|AL589182.1|lncRNA|chr14:19055389:19055446:+	0	+
#Deleted in new
chr14	19055389	19055551	ENSG00000258314.3|AL589182.1|lncRNA|chr14:19055389:19055551:+	0	+
#Partially deleted in new
chr14	19127735	19128249	ENSG00000277128.1|AL589743.4|lncRNA|chr14:19127735:19128249:-	0	-
#Deleted in new
chr14	19175458	19175530	ENSG00000277128.1|AL589743.4|lncRNA|chr14:19175458:19175530:-	0	-
#Deleted in new
chr14	19344577	19344634	ENSG00000274827.4|LINC01297|lncRNA|chr14:19344577:19344634:-	0	-
#Deleted in new
chr14	19348215	19348698	ENSG00000274827.4|LINC01297|lncRNA|chr14:19348215:19348698:-	0	-
#Deleted in new
chr14	19356870	19357132	ENSG00000274827.4|LINC01297|lncRNA|chr14:19356870:19357132:-	0	-
#Deleted in new
chr14	19368192	19368258	ENSG00000274827.4|LINC01297|lncRNA|chr14:19368192:19368258:-	0	-
#Deleted in new
chr14	19375741	19375876	ENSG00000274827.4|LINC01297|lncRNA|chr14:19375741:19375876:-	0	-
#Partially deleted in new
chr14	19381176	19384587	ENSG00000274827.4|LINC01297|lncRNA|chr14:19381176:19384587:-	0	-
#Duplicated in new
chr14	19402763	19403109	ENSG00000187537.13|POTEG|pc|chr14:19402763:19403109:-	0	-
#Deleted in new
chr14	19409332	19409381	ENSG00000187537.13|POTEG|pc|chr14:19409332:19409381:-	0	-
#Duplicated in new
chr14	19413353	19413520	ENSG00000187537.13|POTEG|pc|chr14:19413353:19413520:-	0	-
#Deleted in new
chr14	19420974	19421420	ENSG00000276888.1|AL512624.2|lncRNA|chr14:19420974:19421420:+	0	+
#Deleted in new
chr14	19426732	19426988	ENSG00000187537.13|POTEG|pc|chr14:19426732:19426988:-	0	-
#Partially deleted in new
chr14	19637224	19637266	ENSG00000273558.1|AL512310.11|lncRNA|chr14:19637224:19637266:+	0	+
#Partially deleted in new
chr14	19639593	19641306	ENSG00000273558.1|AL512310.11|lncRNA|chr14:19639593:19641306:+	0	+
#Deleted in new
chr14	19653096	19653139	ENSG00000273639.5|AL512310.12|lncRNA|chr14:19653096:19653139:+	0	+
#Deleted in new
chr14	19656156	19656254	ENSG00000273639.5|AL512310.12|lncRNA|chr14:19656156:19656254:+	0	+
#Deleted in new
chr14	19660530	19660578	ENSG00000273639.5|AL512310.12|lncRNA|chr14:19660530:19660578:+	0	+
#Deleted in new
chr14	19681419	19681589	ENSG00000257395.1|AL512310.2|lncRNA|chr14:19681419:19681589:+	0	+
#Deleted in new
chr14	19714292	19714332	ENSG00000258453.3|OR11H2|pc|chr14:19714292:19714332:-	0	-
#Deleted in new
chr14	19719014	19719116	ENSG00000176294.5|OR4N2|pc|chr14:19719014:19719116:+	0	+
#Deleted in new
chr14	19761887	19761983	ENSG00000176294.5|OR4N2|pc|chr14:19761887:19761983:+	0	+
#Deleted in new
chr14	19803769	19803844	ENSG00000176294.5|OR4N2|pc|chr14:19803769:19803844:+	0	+
#Deleted in new
chr14	19821934	19822451	ENSG00000176294.5|OR4N2|pc|chr14:19821934:19822451:+	0	+
#Deleted in new
chr14	19822253	19822451	ENSG00000176294.5|OR4N2|pc|chr14:19822253:19822451:+	0	+
#Deleted in new
chr14	19878941	19879103	ENSG00000165762.3|OR4K2|pc|chr14:19878941:19879103:+	0	+
#Partially deleted in new
chr14	19878941	19883932	ENSG00000165762.3|OR4K2|pc|chr14:19878941:19883932:+	0	+
#Partially deleted in new
chr14	19879341	19883932	ENSG00000165762.3|OR4K2|pc|chr14:19879341:19883932:+	0	+
#Deleted in new
chr14	20019142	20019307	ENSG00000169484.3|OR4K14|pc|chr14:20019142:20019307:-	0	-
#Partially deleted in new
chr14	20029398	20034981	ENSG00000176253.3|OR4K13|pc|chr14:20029398:20034981:-	0	-
#Deleted in new
chr14	20035641	20036038	ENSG00000176253.3|OR4K13|pc|chr14:20035641:20036038:-	0	-
#Deleted in new
chr14	20035937	20036038	ENSG00000176253.3|OR4K13|pc|chr14:20035937:20036038:-	0	-
#Deleted in new
chr14	20110738	20110892	ENSG00000176230.5|OR4K17|pc|chr14:20110738:20110892:+	0	+
#Deleted in new
chr14	20111909	20112091	ENSG00000176230.5|OR4K17|pc|chr14:20111909:20112091:+	0	+
#Split in new
chr14	20117467	20122199	ENSG00000176230.5|OR4K17|pc|chr14:20117467:20122199:+	0	+
#Deleted in new
chr14	20256557	20256685	ENSG00000136319.11|TTC5|pc|chr14:20256557:20256685:-	0	-
#Deleted in new
chr14	20257717	20257775	ENSG00000136319.11|TTC5|pc|chr14:20257717:20257775:-	0	-
#Deleted in new
chr14	20258184	20258199	ENSG00000136319.11|TTC5|pc|chr14:20258184:20258199:-	0	-
#Deleted in new
chr14	20260583	20260978	ENSG00000136319.11|TTC5|pc|chr14:20260583:20260978:-	0	-
#Partially deleted in new
chr14	20261388	20261614	ENSG00000136319.11|TTC5|pc|chr14:20261388:20261614:-	0	-
#Partially deleted in new
chr14	20286227	20289746	ENSG00000136319.11|TTC5|pc|chr14:20286227:20289746:-	0	-
#Deleted in new
chr14	20287187	20287740	ENSG00000136319.11|TTC5|pc|chr14:20287187:20287740:-	0	-
#Deleted in new
chr14	20314210	20314649	ENSG00000100814.17|CCNB1IP1|pc|chr14:20314210:20314649:-	0	-
#Deleted in new
chr14	20315484	20315618	ENSG00000100814.17|CCNB1IP1|pc|chr14:20315484:20315618:-	0	-
#Deleted in new
chr14	20315780	20315850	ENSG00000100814.17|CCNB1IP1|pc|chr14:20315780:20315850:-	0	-
#Deleted in new
chr14	20317595	20317974	ENSG00000100814.17|CCNB1IP1|pc|chr14:20317595:20317974:-	0	-
#Deleted in new
chr14	20317793	20317974	ENSG00000100814.17|CCNB1IP1|pc|chr14:20317793:20317974:-	0	-
#Deleted in new
chr14	20317794	20317974	ENSG00000100814.17|CCNB1IP1|pc|chr14:20317794:20317974:-	0	-
#Deleted in new
chr14	20318255	20318470	ENSG00000100814.17|CCNB1IP1|pc|chr14:20318255:20318470:-	0	-
#Deleted in new
chr14	20319050	20319103	ENSG00000100814.17|CCNB1IP1|pc|chr14:20319050:20319103:-	0	-
#Deleted in new
chr14	20320287	20320392	ENSG00000100814.17|CCNB1IP1|pc|chr14:20320287:20320392:-	0	-
#Deleted in new
chr14	20326715	20326793	ENSG00000100814.17|CCNB1IP1|pc|chr14:20326715:20326793:-	0	-
#Deleted in new
chr14	20329173	20329270	ENSG00000100814.17|CCNB1IP1|pc|chr14:20329173:20329270:-	0	-
#Deleted in new
chr14	20329173	20329373	ENSG00000100814.17|CCNB1IP1|pc|chr14:20329173:20329373:-	0	-
#Deleted in new
chr14	20329173	20329374	ENSG00000100814.17|CCNB1IP1|pc|chr14:20329173:20329374:-	0	-
#Deleted in new
chr14	20329173	20329377	ENSG00000100814.17|CCNB1IP1|pc|chr14:20329173:20329377:-	0	-
#Deleted in new
chr14	20329173	20329380	ENSG00000100814.17|CCNB1IP1|pc|chr14:20329173:20329380:-	0	-
#Deleted in new
chr14	20329223	20329373	ENSG00000100814.17|CCNB1IP1|pc|chr14:20329223:20329373:-	0	-
#Deleted in new
chr14	20330525	20330888	ENSG00000100814.17|CCNB1IP1|pc|chr14:20330525:20330888:-	0	-
#Deleted in new
chr14	20332843	20333010	ENSG00000100814.17|CCNB1IP1|pc|chr14:20332843:20333010:-	0	-
#Deleted in new
chr14	20332843	20333273	ENSG00000100814.17|CCNB1IP1|pc|chr14:20332843:20333273:-	0	-
#Deleted in new
chr14	20332843	20333282	ENSG00000100814.17|CCNB1IP1|pc|chr14:20332843:20333282:-	0	-
#Deleted in new
chr14	20333253	20333288	ENSG00000100814.17|CCNB1IP1|pc|chr14:20333253:20333288:-	0	-
#Deleted in new
chr14	20333253	20333303	ENSG00000100814.17|CCNB1IP1|pc|chr14:20333253:20333303:-	0	-
#Deleted in new
chr14	20333253	20333312	ENSG00000100814.17|CCNB1IP1|pc|chr14:20333253:20333312:-	0	-
#Deleted in new
chr14	20344232	20344376	ENSG00000254846.1|AL355075.1|lncRNA|chr14:20344232:20344376:-	0	-
#Partially deleted in new
chr14	20352512	20353003	ENSG00000129484.13|PARP2|pc|chr14:20352512:20353003:+	0	+
#Deleted in new
chr14	20365666	20367103	ENSG00000129566.12|TEP1|pc|chr14:20365666:20367103:-	0	-
#Partially deleted in new
chr14	20365666	20368559	ENSG00000129566.12|TEP1|pc|chr14:20365666:20368559:-	0	-
#Partially deleted in new
chr14	20448901	20450879	ENSG00000092094.10|OSGEP|pc|chr14:20448901:20450879:-	0	-
#Deleted in new
chr14	20451256	20451452	ENSG00000092094.10|OSGEP|pc|chr14:20451256:20451452:-	0	-
#Deleted in new
chr14	20451304	20451448	ENSG00000258515.1|AL355075.2|lncRNA|chr14:20451304:20451448:+	0	+
#Partially deleted in new
chr14	20454568	20455053	ENSG00000092094.10|OSGEP|pc|chr14:20454568:20455053:-	0	-
#Partially deleted in new
chr14	20454568	20455089	ENSG00000092094.10|OSGEP|pc|chr14:20454568:20455089:-	0	-
#Partially deleted in new
chr14	20454568	20455105	ENSG00000092094.10|OSGEP|pc|chr14:20454568:20455105:-	0	-
#Partially deleted in new
chr14	20455247	20455338	ENSG00000100823.11|APEX1|pc|chr14:20455247:20455338:+	0	+
#Deleted in new
chr14	20505536	20506019	ENSG00000182545.6|RNASE10|pc|chr14:20505536:20506019:+	0	+
#Deleted in new
chr14	20559581	20559633	ENSG00000188655.10|RNASE9|pc|chr14:20559581:20559633:-	0	-
#Deleted in new
chr14	20560336	20560371	ENSG00000188655.10|RNASE9|pc|chr14:20560336:20560371:-	0	-
#Deleted in new
chr14	20596670	20596819	ENSG00000258573.5|AL163195.2|lncRNA|chr14:20596670:20596819:+	0	+
#Deleted in new
chr14	20596675	20596791	ENSG00000258573.5|AL163195.2|lncRNA|chr14:20596675:20596791:+	0	+
#Deleted in new
chr14	20602662	20602754	ENSG00000258573.5|AL163195.2|lncRNA|chr14:20602662:20602754:+	0	+
#Deleted in new
chr14	20602662	20602782	ENSG00000258573.5|AL163195.2|lncRNA|chr14:20602662:20602782:+	0	+
#Deleted in new
chr14	20605841	20605887	ENSG00000258573.5|AL163195.2|lncRNA|chr14:20605841:20605887:+	0	+
#Deleted in new
chr14	20605841	20607137	ENSG00000258573.5|AL163195.2|lncRNA|chr14:20605841:20607137:+	0	+
#Deleted in new
chr14	20609543	20609795	ENSG00000259060.7|AL163195.3|pc|chr14:20609543:20609795:-	0	-
#Deleted in new
chr14	20609543	20609884	ENSG00000173464.14|RNASE11|pc|chr14:20609543:20609884:-	0	-
#Partially deleted in new
chr14	20706746	20707120	ENSG00000258451.1|AL163636.1|lncRNA|chr14:20706746:20707120:-	0	-
#Deleted in new
chr14	20783887	20784032	ENSG00000258810.1|AL133371.2|lncRNA|chr14:20783887:20784032:+	0	+
#Deleted in new
chr14	20784144	20784293	ENSG00000258810.1|AL133371.2|lncRNA|chr14:20784144:20784293:+	0	+
#Deleted in new
chr14	20872371	20872561	ENSG00000259130.1|AL133371.3|lncRNA|chr14:20872371:20872561:-	0	-
#Deleted in new
chr14	20873190	20873370	ENSG00000259130.1|AL133371.3|lncRNA|chr14:20873190:20873370:-	0	-
#Deleted in new
chr14	20874304	20874836	ENSG00000258642.1|AL133371.1|lncRNA|chr14:20874304:20874836:-	0	-
#Deleted in new
chr14	20875536	20875768	ENSG00000258642.1|AL133371.1|lncRNA|chr14:20875536:20875768:-	0	-
#Deleted in new
chr14	20897984	20898181	ENSG00000258918.1|AL355922.5|lncRNA|chr14:20897984:20898181:-	0	-
#Partially deleted in new
chr14	20916765	20916870	ENSG00000258772.1|AL355922.4|lncRNA|chr14:20916765:20916870:-	0	-
#Deleted in new
chr14	20928236	20928580	ENSG00000258772.1|AL355922.4|lncRNA|chr14:20928236:20928580:-	0	-
#Deleted in new
chr14	20936101	20936255	ENSG00000258918.1|AL355922.5|lncRNA|chr14:20936101:20936255:-	0	-
#Deleted in new
chr14	20997679	20997814	ENSG00000258471.1|AL355922.2|lncRNA|chr14:20997679:20997814:-	0	-
#Duplicated in new
chr14	21019919	21020109	ENSG00000165795.23|NDRG2|pc|chr14:21019919:21020109:-	0	-
#Split in new
chr14	21019919	21020291	ENSG00000165795.23|NDRG2|pc|chr14:21019919:21020291:-	0	-
#Partially deleted in new
chr14	21028445	21028534	ENSG00000258604.1|AL161668.3|lncRNA|chr14:21028445:21028534:+	0	+
#Deleted in new
chr14	21046865	21046930	ENSG00000165795.23|NDRG2|pc|chr14:21046865:21046930:-	0	-
#Deleted in new
chr14	21108042	21108159	ENSG00000178107.2|AL161668.1|lncRNA|chr14:21108042:21108159:+	0	+
#Split in new
chr14	21148369	21155886	ENSG00000169327.5|OR5AU1|pc|chr14:21148369:21155886:-	0	-
#Partially deleted in new
chr14	21200078	21205503	ENSG00000258441.1|LINC00641|lncRNA|chr14:21200078:21205503:-	0	-
#Deleted in new
chr14	21200460	21201933	ENSG00000258441.1|LINC00641|lncRNA|chr14:21200460:21201933:-	0	-
#Deleted in new
chr14	21206610	21206900	ENSG00000258441.1|LINC00641|lncRNA|chr14:21206610:21206900:-	0	-
#Deleted in new
chr14	21231364	21231422	ENSG00000092199.17|HNRNPC|pc|chr14:21231364:21231422:-	0	-
#Deleted in new
chr14	21234768	21234831	ENSG00000092199.17|HNRNPC|pc|chr14:21234768:21234831:-	0	-
#Deleted in new
chr14	21236372	21236460	ENSG00000092199.17|HNRNPC|pc|chr14:21236372:21236460:-	0	-
#Deleted in new
chr14	21254546	21254593	ENSG00000092199.17|HNRNPC|pc|chr14:21254546:21254593:-	0	-
#Deleted in new
chr14	21318126	21318201	ENSG00000092200.12|RPGRIP1|pc|chr14:21318126:21318201:+	0	+
#Deleted in new
chr14	21482551	21482611	ENSG00000092203.13|TOX4|pc|chr14:21482551:21482611:+	0	+
#Deleted in new
chr14	21507650	21508235	ENSG00000165819.11|METTL3|pc|chr14:21507650:21508235:-	0	-
#Deleted in new
chr14	21508135	21508235	ENSG00000165819.11|METTL3|pc|chr14:21508135:21508235:-	0	-
#Deleted in new
chr14	21509483	21509554	ENSG00000165819.11|METTL3|pc|chr14:21509483:21509554:-	0	-
#Deleted in new
chr14	21574825	21574932	ENSG00000169208.2|OR10G3|pc|chr14:21574825:21574932:-	0	-
#Deleted in new
chr14	21660652	21660746	ENSG00000221977.2|OR4E2|pc|chr14:21660652:21660746:+	0	+
#Deleted in new
chr14	21714794	21714989	ENSG00000248358.2|AC243972.1|lncRNA|chr14:21714794:21714989:-	0	-
#Deleted in new
chr14	21715887	21716262	ENSG00000248358.2|AC243972.1|lncRNA|chr14:21715887:21716262:-	0	-
#Deleted in new
chr14	22417835	22417972	ENSG00000259042.2|AC244502.3|lncRNA|chr14:22417835:22417972:+	0	+
#Deleted in new
chr14	22418337	22418657	ENSG00000259042.2|AC244502.3|lncRNA|chr14:22418337:22418657:+	0	+
#Deleted in new
chr14	22418354	22418935	ENSG00000251002.7|AC244502.1|lncRNA|chr14:22418354:22418935:-	0	-
#Deleted in new
chr14	22418663	22418935	ENSG00000251002.7|AC244502.1|lncRNA|chr14:22418663:22418935:-	0	-
#Deleted in new
chr14	22600118	22600193	ENSG00000100439.10|ABHD4|pc|chr14:22600118:22600193:+	0	+
#Deleted in new
chr14	22706214	22706415	ENSG00000258458.5|AL160314.2|lncRNA|chr14:22706214:22706415:-	0	-
#Deleted in new
chr14	22706278	22706415	ENSG00000258458.5|AL160314.2|lncRNA|chr14:22706278:22706415:-	0	-
#Deleted in new
chr14	22717095	22717217	ENSG00000258458.5|AL160314.2|lncRNA|chr14:22717095:22717217:-	0	-
#Deleted in new
chr14	22717095	22717220	ENSG00000258458.5|AL160314.2|lncRNA|chr14:22717095:22717220:-	0	-
#Deleted in new
chr14	22762024	22762143	ENSG00000258458.5|AL160314.2|lncRNA|chr14:22762024:22762143:-	0	-
#Deleted in new
chr14	22764122	22764242	ENSG00000258458.5|AL160314.2|lncRNA|chr14:22764122:22764242:-	0	-
#Deleted in new
chr14	22764384	22764657	ENSG00000258458.5|AL160314.2|lncRNA|chr14:22764384:22764657:-	0	-
#Partially deleted in new
chr14	22830186	22832078	ENSG00000172590.18|MRPL52|pc|chr14:22830186:22832078:+	0	+
#Deleted in new
chr14	22830963	22831037	ENSG00000172590.18|MRPL52|pc|chr14:22830963:22831037:+	0	+
#Partially deleted in new
chr14	22901564	22901733	ENSG00000100461.17|RBM23|pc|chr14:22901564:22901733:-	0	-
#Partially deleted in new
chr14	22901579	22901733	ENSG00000100461.17|RBM23|pc|chr14:22901579:22901733:-	0	-
#Deleted in new
chr14	22901979	22902099	ENSG00000100461.17|RBM23|pc|chr14:22901979:22902099:-	0	-
#Partially deleted in new
chr14	22902186	22904190	ENSG00000100461.17|RBM23|pc|chr14:22902186:22904190:-	0	-
#Deleted in new
chr14	22902961	22904190	ENSG00000100461.17|RBM23|pc|chr14:22902961:22904190:-	0	-
#Deleted in new
chr14	22903994	22904084	ENSG00000100461.17|RBM23|pc|chr14:22903994:22904084:-	0	-
#Deleted in new
chr14	22905584	22906368	ENSG00000100461.17|RBM23|pc|chr14:22905584:22906368:-	0	-
#Deleted in new
chr14	22905605	22905659	ENSG00000100461.17|RBM23|pc|chr14:22905605:22905659:-	0	-
#Deleted in new
chr14	22905605	22905953	ENSG00000100461.17|RBM23|pc|chr14:22905605:22905953:-	0	-
#Deleted in new
chr14	22906014	22906368	ENSG00000100461.17|RBM23|pc|chr14:22906014:22906368:-	0	-
#Deleted in new
chr14	22906027	22906368	ENSG00000100461.17|RBM23|pc|chr14:22906027:22906368:-	0	-
#Deleted in new
chr14	22906194	22906368	ENSG00000100461.17|RBM23|pc|chr14:22906194:22906368:-	0	-
#Deleted in new
chr14	22906200	22906368	ENSG00000100461.17|RBM23|pc|chr14:22906200:22906368:-	0	-
#Deleted in new
chr14	22906244	22906368	ENSG00000100461.17|RBM23|pc|chr14:22906244:22906368:-	0	-
#Deleted in new
chr14	22906247	22906368	ENSG00000100461.17|RBM23|pc|chr14:22906247:22906368:-	0	-
#Deleted in new
chr14	22906274	22906368	ENSG00000100461.17|RBM23|pc|chr14:22906274:22906368:-	0	-
#Deleted in new
chr14	22906317	22906368	ENSG00000100461.17|RBM23|pc|chr14:22906317:22906368:-	0	-
#Deleted in new
chr14	22906349	22906368	ENSG00000100461.17|RBM23|pc|chr14:22906349:22906368:-	0	-
#Deleted in new
chr14	22908332	22908380	ENSG00000100461.17|RBM23|pc|chr14:22908332:22908380:-	0	-
#Deleted in new
chr14	22908332	22908399	ENSG00000100461.17|RBM23|pc|chr14:22908332:22908399:-	0	-
#Deleted in new
chr14	22908531	22908740	ENSG00000100461.17|RBM23|pc|chr14:22908531:22908740:-	0	-
#Deleted in new
chr14	22909482	22909595	ENSG00000100461.17|RBM23|pc|chr14:22909482:22909595:-	0	-
#Deleted in new
chr14	22909489	22909595	ENSG00000100461.17|RBM23|pc|chr14:22909489:22909595:-	0	-
#Deleted in new
chr14	22911327	22911403	ENSG00000100461.17|RBM23|pc|chr14:22911327:22911403:-	0	-
#Deleted in new
chr14	22911327	22911792	ENSG00000100461.17|RBM23|pc|chr14:22911327:22911792:-	0	-
#Deleted in new
chr14	22911785	22911903	ENSG00000100461.17|RBM23|pc|chr14:22911785:22911903:-	0	-
#Deleted in new
chr14	22913723	22913821	ENSG00000100461.17|RBM23|pc|chr14:22913723:22913821:-	0	-
#Deleted in new
chr14	22913723	22913845	ENSG00000100461.17|RBM23|pc|chr14:22913723:22913845:-	0	-
#Deleted in new
chr14	22913914	22914016	ENSG00000100461.17|RBM23|pc|chr14:22913914:22914016:-	0	-
#Deleted in new
chr14	22917027	22917166	ENSG00000100461.17|RBM23|pc|chr14:22917027:22917166:-	0	-
#Deleted in new
chr14	22917478	22917556	ENSG00000100461.17|RBM23|pc|chr14:22917478:22917556:-	0	-
#Partially deleted in new
chr14	22917563	22917802	ENSG00000100461.17|RBM23|pc|chr14:22917563:22917802:-	0	-
#Partially deleted in new
chr14	22975706	22975844	ENSG00000129474.15|AJUBA|pc|chr14:22975706:22975844:-	0	-
#Deleted in new
chr14	23002708	23002769	ENSG00000100802.14|C14orf93|pc|chr14:23002708:23002769:-	0	-
#Deleted in new
chr14	23005064	23005130	ENSG00000100802.14|C14orf93|pc|chr14:23005064:23005130:-	0	-
#Deleted in new
chr14	23005350	23005461	ENSG00000100802.14|C14orf93|pc|chr14:23005350:23005461:-	0	-
#Partially deleted in new
chr14	23006834	23007123	ENSG00000100802.14|C14orf93|pc|chr14:23006834:23007123:-	0	-
#Deleted in new
chr14	23027744	23027829	ENSG00000100804.18|PSMB5|pc|chr14:23027744:23027829:-	0	-
#Deleted in new
chr14	23103286	23103382	ENSG00000283654.1|AL117258.1|pc|chr14:23103286:23103382:-	0	-
#Deleted in new
chr14	23103470	23103548	ENSG00000283654.1|AL117258.1|pc|chr14:23103470:23103548:-	0	-
#Deleted in new
chr1	42315345	42315455	ENSG00000198815.8|FOXJ3|pc|chr1:42315345:42315455:-	0	-
#Deleted in new
chr1	42315345	42315459	ENSG00000198815.8|FOXJ3|pc|chr1:42315345:42315459:-	0	-
#Deleted in new
chr14	23193324	23193401	ENSG00000215277.8|RNF212B|pc|chr14:23193324:23193401:+	0	+
#Deleted in new
chr14	23261305	23261329	ENSG00000215277.8|RNF212B|pc|chr14:23261305:23261329:+	0	+
#Deleted in new
chr14	23284990	23285028	ENSG00000215271.7|HOMEZ|pc|chr14:23284990:23285028:-	0	-
#Split in new
chr14	23295642	23298917	ENSG00000235194.8|PPP1R3E|pc|chr14:23295642:23298917:-	0	-
#Deleted in new
chr14	23295914	23296260	ENSG00000235194.8|PPP1R3E|pc|chr14:23295914:23296260:-	0	-
#Partially deleted in new
chr14	23296376	23298281	ENSG00000235194.8|PPP1R3E|pc|chr14:23296376:23298281:-	0	-
#Deleted in new
chr14	23296755	23296867	ENSG00000235194.8|PPP1R3E|pc|chr14:23296755:23296867:-	0	-
#Partially deleted in new
chr14	23542917	23544276	ENSG00000157306.14|ZFHX2-AS1|lncRNA|chr14:23542917:23544276:+	0	+
#Partially deleted in new
chr14	23564726	23564840	ENSG00000258727.1|AL135999.1|lncRNA|chr14:23564726:23564840:+	0	+
#Partially deleted in new
chr14	23619200	23620012	ENSG00000274002.1|AL135999.3|lncRNA|chr14:23619200:23620012:+	0	+
#Partially deleted in new
chr14	23630114	23630235	ENSG00000100867.14|DHRS2|pc|chr14:23630114:23630235:+	0	+
#Deleted in new
chr14	23636334	23636772	ENSG00000100867.14|DHRS2|pc|chr14:23636334:23636772:+	0	+
#Deleted in new
chr14	23636366	23636772	ENSG00000100867.14|DHRS2|pc|chr14:23636366:23636772:+	0	+
#Deleted in new
chr14	23636372	23636772	ENSG00000100867.14|DHRS2|pc|chr14:23636372:23636772:+	0	+
#Partially deleted in new
chr14	23641665	23642438	ENSG00000100867.14|DHRS2|pc|chr14:23641665:23642438:+	0	+
#Partially deleted in new
chr14	23938730	23941158	ENSG00000215256.3|DHRS4-AS1|lncRNA|chr14:23938730:23941158:-	0	-
#Partially deleted in new
chr14	24110293	24110598	ENSG00000100889.11|PCK2|pc|chr14:24110293:24110598:+	0	+
#Partially deleted in new
chr14	24139729	24140444	ENSG00000259321.1|AL136295.2|lncRNA|chr14:24139729:24140444:+	0	+
#Deleted in new
chr14	24198432	24199090	ENSG00000276698.1|AL136295.6|lncRNA|chr14:24198432:24199090:+	0	+
#Deleted in new
chr14	24201611	24202811	ENSG00000278784.1|AL136295.7|lncRNA|chr14:24201611:24202811:-	0	-
#Duplicated in new
chr14	24211679	24211824	ENSG00000254505.9|CHMP4A|pc|chr14:24211679:24211824:-	0	-
#Duplicated in new
chr14	24211679	24211829	ENSG00000254505.9|CHMP4A|pc|chr14:24211679:24211829:-	0	-
#Duplicated in new
chr14	24211679	24211829	ENSG00000254692.1|AL136295.1|pc|chr14:24211679:24211829:-	0	-
#Duplicated in new
chr14	24211679	24211829	ENSG00000260669.2|AL096870.2|lncRNA|chr14:24211679:24211829:-	0	-
#Deleted in new
chr14	24212550	24212704	ENSG00000254505.9|CHMP4A|pc|chr14:24212550:24212704:-	0	-
#Partially deleted in new
chr14	24212765	24213095	ENSG00000254505.9|CHMP4A|pc|chr14:24212765:24213095:-	0	-
#Partially deleted in new
chr14	24226604	24228712	ENSG00000129559.12|NEDD8|pc|chr14:24226604:24228712:-	0	-
#Partially deleted in new
chr14	24292620	24294656	ENSG00000157379.13|DHRS1|pc|chr14:24292620:24294656:-	0	-
#Partially deleted in new
chr14	24328606	24328873	ENSG00000129467.13|ADCY4|pc|chr14:24328606:24328873:-	0	-
#Deleted in new
chr14	24365672	24365718	ENSG00000100968.13|NFATC4|pc|chr14:24365672:24365718:+	0	+
#Deleted in new
chr14	24501593	24501736	ENSG00000258744.1|AL132800.1|lncRNA|chr14:24501593:24501736:+	0	+
#Deleted in new
chr1	42459203	42459305	ENSG00000127125.8|PPCS|pc|chr1:42459203:42459305:+	0	+
#Deleted in new
chr14	24595722	24596002	ENSG00000258657.5|AL136018.1|lncRNA|chr14:24595722:24596002:+	0	+
#Deleted in new
chr14	24595984	24596002	ENSG00000258657.5|AL136018.1|lncRNA|chr14:24595984:24596002:+	0	+
#Deleted in new
chr14	24622967	24623126	ENSG00000258657.5|AL136018.1|lncRNA|chr14:24622967:24623126:+	0	+
#Deleted in new
chr14	24632718	24632719	ENSG00000100453.12|GZMB|pc|chr14:24632718:24632719:-	0	-
#Duplicated in new
chr14	24633909	24634016	ENSG00000100453.12|GZMB|pc|chr14:24633909:24634016:-	0	-
#Deleted in new
chr14	24654646	24654707	ENSG00000258657.5|AL136018.1|lncRNA|chr14:24654646:24654707:+	0	+
#Deleted in new
chr14	24657524	24657774	ENSG00000258657.5|AL136018.1|lncRNA|chr14:24657524:24657774:+	0	+
#Deleted in new
chr1	42467743	42467782	ENSG00000186409.14|CCDC30|pc|chr1:42467743:42467782:+	0	+
#Partially deleted in new
chr1	42468659	42468718	ENSG00000186409.14|CCDC30|pc|chr1:42468659:42468718:+	0	+
#Deleted in new
chr1	42473121	42473303	ENSG00000186409.14|CCDC30|pc|chr1:42473121:42473303:+	0	+
#Deleted in new
chr1	42473121	42473385	ENSG00000127125.8|PPCS|pc|chr1:42473121:42473385:+	0	+
#Deleted in new
chr1	42473121	42473385	ENSG00000186409.14|CCDC30|pc|chr1:42473121:42473385:+	0	+
#Deleted in new
chr1	42473121	42473417	ENSG00000186409.14|CCDC30|pc|chr1:42473121:42473417:+	0	+
#Deleted in new
chr1	42473121	42473560	ENSG00000186409.14|CCDC30|pc|chr1:42473121:42473560:+	0	+
#Deleted in new
chr1	42480460	42480566	ENSG00000186409.14|CCDC30|pc|chr1:42480460:42480566:+	0	+
#Deleted in new
chr1	42498817	42498916	ENSG00000186409.14|CCDC30|pc|chr1:42498817:42498916:+	0	+
#Deleted in new
chr14	24994863	24994984	ENSG00000168952.15|STXBP6|pc|chr14:24994863:24994984:-	0	-
#Deleted in new
chr1	42521162	42521256	ENSG00000186409.14|CCDC30|pc|chr1:42521162:42521256:+	0	+
#Deleted in new
chr1	42529601	42529721	ENSG00000186409.14|CCDC30|pc|chr1:42529601:42529721:+	0	+
#Partially deleted in new
chr1	42536475	42537985	ENSG00000186409.14|CCDC30|pc|chr1:42536475:42537985:+	0	+
#Deleted in new
chr1	42537191	42537290	ENSG00000186409.14|CCDC30|pc|chr1:42537191:42537290:+	0	+
#Deleted in new
chr1	42558138	42558276	ENSG00000186409.14|CCDC30|pc|chr1:42558138:42558276:+	0	+
#Deleted in new
chr1	42580831	42580981	ENSG00000186409.14|CCDC30|pc|chr1:42580831:42580981:+	0	+
#Partially deleted in new
chr1	42589320	42595573	ENSG00000186409.14|CCDC30|pc|chr1:42589320:42595573:+	0	+
#Deleted in new
chr1	42590314	42590461	ENSG00000186409.14|CCDC30|pc|chr1:42590314:42590461:+	0	+
#Deleted in new
chr14	26126156	26126215	ENSG00000257986.1|LINC02306|lncRNA|chr14:26126156:26126215:-	0	-
#Deleted in new
chr1	42646134	42646317	ENSG00000186409.14|CCDC30|pc|chr1:42646134:42646317:+	0	+
#Deleted in new
chr14	26568419	26568465	ENSG00000139910.19|NOVA1|pc|chr14:26568419:26568465:-	0	-
#Deleted in new
chr14	26731063	26731156	ENSG00000257842.5|NOVA1-AS1|lncRNA|chr14:26731063:26731156:+	0	+
#Deleted in new
chr14	26735353	26735372	ENSG00000257842.5|NOVA1-AS1|lncRNA|chr14:26735353:26735372:+	0	+
#Deleted in new
chr14	26779794	26779879	ENSG00000257842.5|NOVA1-AS1|lncRNA|chr14:26779794:26779879:+	0	+
#Deleted in new
chr1	42678734	42678869	ENSG00000234917.2|AC098484.2|lncRNA|chr1:42678734:42678869:+	0	+
#Partially deleted in new
chr14	26797913	26798030	ENSG00000257842.5|NOVA1-AS1|lncRNA|chr14:26797913:26798030:+	0	+
#Deleted in new
chr14	26818703	26818780	ENSG00000257185.1|LINC02293|lncRNA|chr14:26818703:26818780:+	0	+
#Deleted in new
chr14	26827716	26827803	ENSG00000257185.1|LINC02293|lncRNA|chr14:26827716:26827803:+	0	+
#Deleted in new
chr14	26843451	26843656	ENSG00000258081.3|AL110292.1|lncRNA|chr14:26843451:26843656:+	0	+
#Deleted in new
chr14	26843530	26843656	ENSG00000258081.3|AL110292.1|lncRNA|chr14:26843530:26843656:+	0	+
#Deleted in new
chr14	27132247	27132271	ENSG00000258081.3|AL110292.1|lncRNA|chr14:27132247:27132271:+	0	+
#Deleted in new
chr14	27133969	27134038	ENSG00000258081.3|AL110292.1|lncRNA|chr14:27133969:27134038:+	0	+
#Deleted in new
chr1	42751640	42751740	ENSG00000117385.15|P3H1|pc|chr1:42751640:42751740:-	0	-
#Partially deleted in new
chr1	42751724	42751834	ENSG00000117385.15|P3H1|pc|chr1:42751724:42751834:-	0	-
#Partially deleted in new
chr1	42759985	42762475	ENSG00000117385.15|P3H1|pc|chr1:42759985:42762475:-	0	-
#Deleted in new
chr14	27612587	27612677	ENSG00000258548.5|LINC00645|lncRNA|chr14:27612587:27612677:+	0	+
#Deleted in new
chr14	27612610	27612677	ENSG00000258548.5|LINC00645|lncRNA|chr14:27612610:27612677:+	0	+
#Deleted in new
chr14	27613420	27613496	ENSG00000258548.5|LINC00645|lncRNA|chr14:27613420:27613496:+	0	+
#Deleted in new
chr14	27619822	27619873	ENSG00000258548.5|LINC00645|lncRNA|chr14:27619822:27619873:+	0	+
#Deleted in new
chr14	27636419	27636669	ENSG00000258548.5|LINC00645|lncRNA|chr14:27636419:27636669:+	0	+
#Partially deleted in new
chr14	27636419	27639636	ENSG00000258548.5|LINC00645|lncRNA|chr14:27636419:27639636:+	0	+
#Deleted in new
chr1	42769677	42769827	ENSG00000164008.14|C1orf50|pc|chr1:42769677:42769827:+	0	+
#Partially deleted in new
chr1	42798097	42800818	ENSG00000274386.5|TMEM269|pc|chr1:42798097:42800818:+	0	+
#Deleted in new
chr1	42803331	42803409	ENSG00000274386.5|TMEM269|pc|chr1:42803331:42803409:+	0	+
#Deleted in new
chr1	42805384	42805459	ENSG00000274386.5|TMEM269|pc|chr1:42805384:42805459:+	0	+
#Deleted in new
chr1	42809027	42809135	ENSG00000274386.5|TMEM269|pc|chr1:42809027:42809135:+	0	+
#Deleted in new
chr1	42824435	42824752	ENSG00000164010.13|ERMAP|pc|chr1:42824435:42824752:+	0	+
#Deleted in new
chr14	28318140	28318532	ENSG00000257869.1|AL139023.1|lncRNA|chr14:28318140:28318532:+	0	+
#Deleted in new
chr14	28418543	28418612	ENSG00000257869.1|AL139023.1|lncRNA|chr14:28418543:28418612:+	0	+
#Deleted in new
chr1	42841897	42842013	ENSG00000228192.7|AL512353.1|lncRNA|chr1:42841897:42842013:-	0	-
#Partially deleted in new
chr1	42844510	42844610	ENSG00000228192.7|AL512353.1|lncRNA|chr1:42844510:42844610:-	0	-
#Partially deleted in new
chr1	42846256	42846387	ENSG00000228192.7|AL512353.1|lncRNA|chr1:42846256:42846387:-	0	-
#Deleted in new
chr1	42849290	42849413	ENSG00000164011.17|ZNF691|pc|chr1:42849290:42849413:+	0	+
#Deleted in new
chr1	42849554	42849742	ENSG00000164011.17|ZNF691|pc|chr1:42849554:42849742:+	0	+
#Deleted in new
chr1	42849564	42849742	ENSG00000164011.17|ZNF691|pc|chr1:42849564:42849742:+	0	+
#Deleted in new
chr14	28612321	28612478	ENSG00000258175.1|LINC02300|lncRNA|chr14:28612321:28612478:-	0	-
#Deleted in new
chr14	28613458	28613623	ENSG00000258175.1|LINC02300|lncRNA|chr14:28613458:28613623:-	0	-
#Deleted in new
chr14	28729082	28729251	ENSG00000257126.5|FOXG1-AS1|lncRNA|chr14:28729082:28729251:-	0	-
#Deleted in new
chr14	28729401	28729556	ENSG00000257126.5|FOXG1-AS1|lncRNA|chr14:28729401:28729556:-	0	-
#Deleted in new
chr14	28729509	28729556	ENSG00000257126.5|FOXG1-AS1|lncRNA|chr14:28729509:28729556:-	0	-
#Deleted in new
chr14	28735002	28735030	ENSG00000257126.5|FOXG1-AS1|lncRNA|chr14:28735002:28735030:-	0	-
#Deleted in new
chr14	28738726	28738844	ENSG00000257126.5|FOXG1-AS1|lncRNA|chr14:28738726:28738844:-	0	-
#Deleted in new
chr14	28741833	28741959	ENSG00000257126.5|FOXG1-AS1|lncRNA|chr14:28741833:28741959:-	0	-
#Partially deleted in new
chr14	28777857	28777991	ENSG00000186960.10|LINC01551|lncRNA|chr14:28777857:28777991:+	0	+
#Deleted in new
chr14	28786487	28786537	ENSG00000186960.10|LINC01551|lncRNA|chr14:28786487:28786537:+	0	+
#Deleted in new
chr14	28812972	28813453	ENSG00000186960.10|LINC01551|lncRNA|chr14:28812972:28813453:+	0	+
#Partially deleted in new
chr14	28818740	28819258	ENSG00000274762.1|AL049777.1|lncRNA|chr14:28818740:28819258:+	0	+
#Deleted in new
chr14	28819599	28819677	ENSG00000257748.1|LINC02281|lncRNA|chr14:28819599:28819677:-	0	-
#Deleted in new
chr14	28824855	28824947	ENSG00000257748.1|LINC02281|lncRNA|chr14:28824855:28824947:-	0	-
#Deleted in new
chr14	28830125	28830204	ENSG00000257748.1|LINC02281|lncRNA|chr14:28830125:28830204:-	0	-
#Partially deleted in new
chr14	28830243	28830502	ENSG00000258038.5|LINC02327|lncRNA|chr14:28830243:28830502:+	0	+
#Partially deleted in new
chr14	28830246	28830502	ENSG00000258038.5|LINC02327|lncRNA|chr14:28830246:28830502:+	0	+
#Partially deleted in new
chr14	28830247	28830502	ENSG00000258038.5|LINC02327|lncRNA|chr14:28830247:28830502:+	0	+
#Partially deleted in new
chr14	28830249	28830502	ENSG00000258038.5|LINC02327|lncRNA|chr14:28830249:28830502:+	0	+
#Deleted in new
chr14	28832005	28832060	ENSG00000258038.5|LINC02327|lncRNA|chr14:28832005:28832060:+	0	+
#Deleted in new
chr14	28834796	28834820	ENSG00000258038.5|LINC02327|lncRNA|chr14:28834796:28834820:+	0	+
#Deleted in new
chr14	28837252	28837330	ENSG00000258038.5|LINC02327|lncRNA|chr14:28837252:28837330:+	0	+
#Deleted in new
chr14	28837252	28837658	ENSG00000258038.5|LINC02327|lncRNA|chr14:28837252:28837658:+	0	+
#Deleted in new
chr14	28837252	28837717	ENSG00000258038.5|LINC02327|lncRNA|chr14:28837252:28837717:+	0	+
#Deleted in new
chr14	28931569	28931622	ENSG00000258038.5|LINC02327|lncRNA|chr14:28931569:28931622:+	0	+
#Deleted in new
chr14	28978892	28978924	ENSG00000257523.1|LINC02326|lncRNA|chr14:28978892:28978924:-	0	-
#Deleted in new
chr14	28986399	28986536	ENSG00000258028.1|AL138974.1|lncRNA|chr14:28986399:28986536:+	0	+
#Deleted in new
chr14	29018952	29019087	ENSG00000258028.1|AL138974.1|lncRNA|chr14:29018952:29019087:+	0	+
#Deleted in new
chr14	29021279	29021352	ENSG00000258028.1|AL138974.1|lncRNA|chr14:29021279:29021352:+	0	+
#Deleted in new
chr14	29028648	29028763	ENSG00000258028.1|AL138974.1|lncRNA|chr14:29028648:29028763:+	0	+
#Deleted in new
chr14	29267591	29267774	ENSG00000257522.5|AL133166.1|lncRNA|chr14:29267591:29267774:-	0	-
#Deleted in new
chr14	29267733	29267774	ENSG00000257522.5|AL133166.1|lncRNA|chr14:29267733:29267774:-	0	-
#Partially deleted in new
chr14	29307380	29307470	ENSG00000257522.5|AL133166.1|lncRNA|chr14:29307380:29307470:-	0	-
#Deleted in new
chr14	29309179	29309317	ENSG00000257522.5|AL133166.1|lncRNA|chr14:29309179:29309317:-	0	-
#Deleted in new
chr14	29317955	29318002	ENSG00000257522.5|AL133166.1|lncRNA|chr14:29317955:29318002:-	0	-
#Deleted in new
chr14	29408847	29408965	ENSG00000258107.1|AL158058.1|lncRNA|chr14:29408847:29408965:+	0	+
#Partially deleted in new
chr14	29591114	29591289	ENSG00000184304.14|PRKD1|pc|chr14:29591114:29591289:-	0	-
#Deleted in new
chr14	29594085	29594169	ENSG00000184304.14|PRKD1|pc|chr14:29594085:29594169:-	0	-
#Deleted in new
chr1	42961038	42961140	ENSG00000283973.1|AC099795.1|lncRNA|chr1:42961038:42961140:-	0	-
#Deleted in new
chr14	29650301	29650520	ENSG00000184304.14|PRKD1|pc|chr14:29650301:29650520:-	0	-
#Partially deleted in new
chr14	29657576	29657844	ENSG00000184304.14|PRKD1|pc|chr14:29657576:29657844:-	0	-
#Deleted in new
chr1	42970248	42970394	ENSG00000227533.5|SLC2A1-AS1|lncRNA|chr1:42970248:42970394:+	0	+
#Partially deleted in new
chr1	42983124	42983358	ENSG00000227533.5|SLC2A1-AS1|lncRNA|chr1:42983124:42983358:+	0	+
#Deleted in new
chr14	29940744	29940849	ENSG00000257904.1|AL133372.3|lncRNA|chr14:29940744:29940849:+	0	+
#Deleted in new
chr14	29965322	29965502	ENSG00000257904.1|AL133372.3|lncRNA|chr14:29965322:29965502:+	0	+
#Deleted in new
chr14	29966279	29966331	ENSG00000257904.1|AL133372.3|lncRNA|chr14:29966279:29966331:+	0	+
#Deleted in new
chr14	29972668	29973233	ENSG00000248975.2|AL133372.2|lncRNA|chr14:29972668:29973233:-	0	-
#Deleted in new
chr14	29979836	29980212	ENSG00000257904.1|AL133372.3|lncRNA|chr14:29979836:29980212:+	0	+
#Deleted in new
chr14	29980148	29980254	ENSG00000248975.2|AL133372.2|lncRNA|chr14:29980148:29980254:-	0	-
#Deleted in new
chr14	29980148	29980267	ENSG00000248975.2|AL133372.2|lncRNA|chr14:29980148:29980267:-	0	-
#Deleted in new
chr14	30047709	30047787	ENSG00000184304.14|PRKD1|pc|chr14:30047709:30047787:-	0	-
#Deleted in new
chr14	30167833	30168357	ENSG00000248975.2|AL133372.2|lncRNA|chr14:30167833:30168357:-	0	-
#Partially deleted in new
chr14	30205533	30205740	ENSG00000248975.2|AL133372.2|lncRNA|chr14:30205533:30205740:-	0	-
#Deleted in new
chr14	30296933	30297017	ENSG00000248975.2|AL133372.2|lncRNA|chr14:30296933:30297017:-	0	-
#Deleted in new
chr14	30296974	30297043	ENSG00000248975.2|AL133372.2|lncRNA|chr14:30296974:30297043:-	0	-
#Deleted in new
chr14	30451867	30451965	ENSG00000257636.6|G2E3-AS1|lncRNA|chr14:30451867:30451965:-	0	-
#Partially deleted in new
chr14	30474000	30474227	ENSG00000257636.6|G2E3-AS1|lncRNA|chr14:30474000:30474227:-	0	-
#Deleted in new
chr14	30492718	30492821	ENSG00000257636.6|G2E3-AS1|lncRNA|chr14:30492718:30492821:-	0	-
#Deleted in new
chr14	30573506	30573629	ENSG00000257636.6|G2E3-AS1|lncRNA|chr14:30573506:30573629:-	0	-
#Deleted in new
chr14	30574534	30574590	ENSG00000092140.14|G2E3|pc|chr14:30574534:30574590:+	0	+
#Deleted in new
chr14	30577755	30577846	ENSG00000092140.14|G2E3|pc|chr14:30577755:30577846:+	0	+
#Deleted in new
chr14	30577760	30577846	ENSG00000092140.14|G2E3|pc|chr14:30577760:30577846:+	0	+
#Deleted in new
chr14	30590531	30590963	ENSG00000092140.14|G2E3|pc|chr14:30590531:30590963:+	0	+
#Deleted in new
chr14	30602746	30602889	ENSG00000092140.14|G2E3|pc|chr14:30602746:30602889:+	0	+
#Partially deleted in new
chr14	30611301	30612379	ENSG00000092140.14|G2E3|pc|chr14:30611301:30612379:+	0	+
#Deleted in new
chr14	30634794	30635034	ENSG00000092108.20|SCFD1|pc|chr14:30634794:30635034:+	0	+
#Deleted in new
chr14	30634921	30635034	ENSG00000092108.20|SCFD1|pc|chr14:30634921:30635034:+	0	+
#Deleted in new
chr14	30643879	30644018	ENSG00000092108.20|SCFD1|pc|chr14:30643879:30644018:+	0	+
#Partially deleted in new
chr14	30674983	30675331	ENSG00000092108.20|SCFD1|pc|chr14:30674983:30675331:+	0	+
#Deleted in new
chr14	30781948	30781996	ENSG00000258558.1|AL121852.1|lncRNA|chr14:30781948:30781996:-	0	-
#Deleted in new
chr14	30822494	30822702	ENSG00000258558.1|AL121852.1|lncRNA|chr14:30822494:30822702:-	0	-
#Partially deleted in new
chr14	30931940	30932398	ENSG00000196792.11|STRN3|pc|chr14:30931940:30932398:-	0	-
#Deleted in new
chr14	31083525	31083609	ENSG00000100478.14|AP4S1|pc|chr14:31083525:31083609:+	0	+
#Deleted in new
chr14	31083525	31083647	ENSG00000100478.14|AP4S1|pc|chr14:31083525:31083647:+	0	+
#Deleted in new
chr14	31084768	31085211	ENSG00000100478.14|AP4S1|pc|chr14:31084768:31085211:+	0	+
#Deleted in new
chr14	31084768	31085789	ENSG00000100478.14|AP4S1|pc|chr14:31084768:31085789:+	0	+
#Deleted in new
chr14	31084768	31086450	ENSG00000100478.14|AP4S1|pc|chr14:31084768:31086450:+	0	+
#Partially deleted in new
chr14	31092906	31096449	ENSG00000100478.14|AP4S1|pc|chr14:31092906:31096449:+	0	+
#Partially deleted in new
chr14	31092906	31096450	ENSG00000100478.14|AP4S1|pc|chr14:31092906:31096450:+	0	+
#Partially deleted in new
chr14	31203070	31203636	ENSG00000092148.12|HECTD1|pc|chr14:31203070:31203636:-	0	-
#Deleted in new
chr14	31248627	31248691	ENSG00000257831.1|AL136418.1|lncRNA|chr14:31248627:31248691:+	0	+
#Deleted in new
chr14	31272893	31272966	ENSG00000257831.1|AL136418.1|lncRNA|chr14:31272893:31272966:+	0	+
#Deleted in new
chr14	31279011	31279134	ENSG00000257831.1|AL136418.1|lncRNA|chr14:31279011:31279134:+	0	+
#Deleted in new
chr14	31295431	31295527	ENSG00000257831.1|AL136418.1|lncRNA|chr14:31295431:31295527:+	0	+
#Partially deleted in new
chr14	31295908	31297720	ENSG00000129493.14|HEATR5A|pc|chr14:31295908:31297720:-	0	-
#Deleted in new
chr14	31334311	31334456	ENSG00000203546.7|AL139353.1|pc|chr14:31334311:31334456:-	0	-
#Deleted in new
chr14	31421843	31421968	ENSG00000250365.6|AL139353.2|lncRNA|chr14:31421843:31421968:+	0	+
#Deleted in new
chr14	31421847	31421968	ENSG00000250365.6|AL139353.2|lncRNA|chr14:31421847:31421968:+	0	+
#Partially deleted in new
chr14	31427506	31427792	ENSG00000203546.7|AL139353.1|pc|chr14:31427506:31427792:-	0	-
#Partially deleted in new
chr14	31446035	31448454	ENSG00000129480.12|DTD2|pc|chr14:31446035:31448454:-	0	-
#Deleted in new
chr14	31446991	31447248	ENSG00000129480.12|DTD2|pc|chr14:31446991:31447248:-	0	-
#Deleted in new
chr14	31447389	31447569	ENSG00000129480.12|DTD2|pc|chr14:31447389:31447569:-	0	-
#Deleted in new
chr14	31489955	31490103	ENSG00000151413.16|NUBPL|pc|chr14:31489955:31490103:+	0	+
#Deleted in new
chr14	31526051	31526176	ENSG00000151413.16|NUBPL|pc|chr14:31526051:31526176:+	0	+
#Deleted in new
chr14	31526154	31526176	ENSG00000151413.16|NUBPL|pc|chr14:31526154:31526176:+	0	+
#Deleted in new
chr14	31562791	31562885	ENSG00000151413.16|NUBPL|pc|chr14:31562791:31562885:+	0	+
#Deleted in new
chr14	31654069	31654134	ENSG00000151413.16|NUBPL|pc|chr14:31654069:31654134:+	0	+
#Deleted in new
chr14	31667820	31667979	ENSG00000151413.16|NUBPL|pc|chr14:31667820:31667979:+	0	+
#Deleted in new
chr14	31703116	31703177	ENSG00000151413.16|NUBPL|pc|chr14:31703116:31703177:+	0	+
#Deleted in new
chr14	31714568	31714803	ENSG00000151413.16|NUBPL|pc|chr14:31714568:31714803:+	0	+
#Deleted in new
chr1	43177120	43177211	ENSG00000243710.7|CFAP57|pc|chr1:43177120:43177211:+	0	+
#Partially deleted in new
chr14	31859117	31861218	ENSG00000151413.16|NUBPL|pc|chr14:31859117:31861218:+	0	+
#Partially deleted in new
chr14	31859117	31861224	ENSG00000151413.16|NUBPL|pc|chr14:31859117:31861224:+	0	+
#Deleted in new
chr14	31929379	31930146	ENSG00000257472.1|AL355112.1|lncRNA|chr14:31929379:31930146:-	0	-
#Deleted in new
chr1	43194683	43194949	ENSG00000117395.12|EBNA1BP2|pc|chr1:43194683:43194949:-	0	-
#Deleted in new
chr1	43206345	43206392	ENSG00000117395.12|EBNA1BP2|pc|chr1:43206345:43206392:-	0	-
#Deleted in new
chr1	43211449	43211497	ENSG00000117395.12|EBNA1BP2|pc|chr1:43211449:43211497:-	0	-
#Deleted in new
chr1	43211449	43211567	ENSG00000117395.12|EBNA1BP2|pc|chr1:43211449:43211567:-	0	-
#Deleted in new
chr14	32373336	32373545	ENSG00000258580.1|AL136298.1|lncRNA|chr14:32373336:32373545:-	0	-
#Deleted in new
chr1	43250218	43250391	ENSG00000117395.12|EBNA1BP2|pc|chr1:43250218:43250391:-	0	-
#Deleted in new
chr1	43261841	43261910	ENSG00000117395.12|EBNA1BP2|pc|chr1:43261841:43261910:-	0	-
#Deleted in new
chr1	43261841	43261918	ENSG00000117395.12|EBNA1BP2|pc|chr1:43261841:43261918:-	0	-
#Deleted in new
chr1	43314382	43314478	ENSG00000066056.13|TIE1|pc|chr1:43314382:43314478:+	0	+
#Deleted in new
chr1	43357802	43357900	ENSG00000234694.1|AL139289.2|lncRNA|chr1:43357802:43357900:-	0	-
#Deleted in new
chr14	33578238	33578336	ENSG00000151322.18|NPAS3|pc|chr14:33578238:33578336:+	0	+
#Deleted in new
chr14	33985152	33985512	ENSG00000129521.13|EGLN3|pc|chr14:33985152:33985512:-	0	-
#Deleted in new
chr14	33985380	33985507	ENSG00000129521.13|EGLN3|pc|chr14:33985380:33985507:-	0	-
#Deleted in new
chr14	33987011	33987162	ENSG00000129521.13|EGLN3|pc|chr14:33987011:33987162:-	0	-
#Deleted in new
chr14	34040096	34040170	ENSG00000258897.1|EGLN3-AS1|lncRNA|chr14:34040096:34040170:+	0	+
#Deleted in new
chr1	43406282	43406894	ENSG00000198198.15|SZT2|pc|chr1:43406282:43406894:+	0	+
#Deleted in new
chr1	43409492	43410321	ENSG00000198198.15|SZT2|pc|chr1:43409492:43410321:+	0	+
#Deleted in new
chr1	43409492	43410577	ENSG00000198198.15|SZT2|pc|chr1:43409492:43410577:+	0	+
#Deleted in new
chr14	34096162	34096415	ENSG00000129521.13|EGLN3|pc|chr14:34096162:34096415:-	0	-
#Partially deleted in new
chr1	43411990	43412791	ENSG00000198198.15|SZT2|pc|chr1:43411990:43412791:+	0	+
#Deleted in new
chr14	34169490	34169646	ENSG00000129521.13|EGLN3|pc|chr14:34169490:34169646:-	0	-
#Deleted in new
chr14	34169745	34169766	ENSG00000129521.13|EGLN3|pc|chr14:34169745:34169766:-	0	-
#Partially deleted in new
chr14	34541739	34541989	ENSG00000259002.2|AL445363.1|lncRNA|chr14:34541739:34541989:-	0	-
#Deleted in new
chr14	34541816	34541998	ENSG00000259002.2|AL445363.1|lncRNA|chr14:34541816:34541998:-	0	-
#Deleted in new
chr14	34542081	34542444	ENSG00000259002.2|AL445363.1|lncRNA|chr14:34542081:34542444:-	0	-
#Deleted in new
chr14	34542948	34543266	ENSG00000259002.2|AL445363.1|lncRNA|chr14:34542948:34543266:-	0	-
#Deleted in new
chr14	34545945	34546329	ENSG00000259002.2|AL445363.1|lncRNA|chr14:34545945:34546329:-	0	-
#Deleted in new
chr14	34556773	34557157	ENSG00000259135.1|AL445363.2|lncRNA|chr14:34556773:34557157:+	0	+
#Deleted in new
chr14	34559848	34560166	ENSG00000259135.1|AL445363.2|lncRNA|chr14:34559848:34560166:+	0	+
#Deleted in new
chr14	34560780	34561033	ENSG00000259135.1|AL445363.2|lncRNA|chr14:34560780:34561033:+	0	+
#Partially deleted in new
chr14	34561116	34561298	ENSG00000259135.1|AL445363.2|lncRNA|chr14:34561116:34561298:+	0	+
#Deleted in new
chr14	34561125	34561260	ENSG00000259135.1|AL445363.2|lncRNA|chr14:34561125:34561260:+	0	+
#Deleted in new
chr14	34828558	34828723	ENSG00000198604.10|BAZ1A|pc|chr14:34828558:34828723:-	0	-
#Deleted in new
chr14	34981956	34982002	ENSG00000100883.11|SRP54|pc|chr14:34981956:34982002:+	0	+
#Partially deleted in new
chr14	35050032	35050396	ENSG00000151327.12|FAM177A1|pc|chr14:35050032:35050396:+	0	+
#Deleted in new
chr14	35050783	35050868	ENSG00000151327.12|FAM177A1|pc|chr14:35050783:35050868:+	0	+
#Deleted in new
chr14	35054658	35054991	ENSG00000151327.12|FAM177A1|pc|chr14:35054658:35054991:+	0	+
#Deleted in new
chr14	35099651	35099695	ENSG00000151327.12|FAM177A1|pc|chr14:35099651:35099695:+	0	+
#Partially deleted in new
chr14	35099675	35102729	ENSG00000151327.12|FAM177A1|pc|chr14:35099675:35102729:+	0	+
#Deleted in new
chr14	35102680	35102729	ENSG00000151327.12|FAM177A1|pc|chr14:35102680:35102729:+	0	+
#Deleted in new
chr14	35106366	35106484	ENSG00000151327.12|FAM177A1|pc|chr14:35106366:35106484:+	0	+
#Deleted in new
chr14	35112863	35113130	ENSG00000151327.12|FAM177A1|pc|chr14:35112863:35113130:+	0	+
#Partially deleted in new
chr14	35124292	35124410	ENSG00000100890.15|KIAA0391|pc|chr14:35124292:35124410:+	0	+
#Deleted in new
chr1	43525186	43525257	ENSG00000142949.16|PTPRF|pc|chr1:43525186:43525257:+	0	+
#Partially deleted in new
chr14	35273434	35274291	ENSG00000258790.1|AL121594.3|pc|chr14:35273434:35274291:+	0	+
#Partially deleted in new
chr14	35273434	35277614	ENSG00000100890.15|KIAA0391|pc|chr14:35273434:35277614:+	0	+
#Deleted in new
chr14	35310216	35310287	ENSG00000100902.10|PSMA6|pc|chr14:35310216:35310287:+	0	+
#Deleted in new
chr14	35310216	35310299	ENSG00000100902.10|PSMA6|pc|chr14:35310216:35310299:+	0	+
#Deleted in new
chr14	35447203	35447625	ENSG00000259017.1|AL133163.3|lncRNA|chr14:35447203:35447625:-	0	-
#Deleted in new
chr14	35706633	35707583	ENSG00000174373.16|RALGAPA1|pc|chr14:35706633:35707583:-	0	-
#Deleted in new
chr14	35858576	35858681	ENSG00000100916.13|BRMS1L|pc|chr14:35858576:35858681:+	0	+
#Deleted in new
chr14	35873856	35873933	ENSG00000257272.1|AL162311.1|lncRNA|chr14:35873856:35873933:+	0	+
#Partially deleted in new
chr14	35874779	35875303	ENSG00000257272.1|AL162311.1|lncRNA|chr14:35874779:35875303:+	0	+
#Deleted in new
chr14	35897981	35898095	ENSG00000258342.1|AL133304.3|lncRNA|chr14:35897981:35898095:+	0	+
#Deleted in new
chr14	35898712	35898840	ENSG00000258342.1|AL133304.3|lncRNA|chr14:35898712:35898840:+	0	+
#Deleted in new
chr14	36061025	36061163	ENSG00000257826.1|AL133304.2|lncRNA|chr14:36061025:36061163:-	0	-
#Deleted in new
chr14	36063326	36063871	ENSG00000257826.1|AL133304.2|lncRNA|chr14:36063326:36063871:-	0	-
#Deleted in new
chr14	36063683	36063743	ENSG00000258342.1|AL133304.3|lncRNA|chr14:36063683:36063743:+	0	+
#Deleted in new
chr14	36136107	36136356	ENSG00000259104.2|PTCSC3|lncRNA|chr14:36136107:36136356:-	0	-
#Deleted in new
chr14	36153803	36153894	ENSG00000259104.2|PTCSC3|lncRNA|chr14:36153803:36153894:-	0	-
#Deleted in new
chr14	36162623	36162683	ENSG00000259104.2|PTCSC3|lncRNA|chr14:36162623:36162683:-	0	-
#Partially deleted in new
chr14	36725152	36725468	ENSG00000183032.11|SLC25A21|pc|chr14:36725152:36725468:-	0	-
#Deleted in new
chr14	36806823	36807163	ENSG00000258690.1|AL162464.2|lncRNA|chr14:36806823:36807163:+	0	+
#Deleted in new
chr14	36828421	36828729	ENSG00000258601.1|AL162464.1|lncRNA|chr14:36828421:36828729:+	0	+
#Deleted in new
chr1	43699764	43700063	ENSG00000236200.5|KDM4A-AS1|lncRNA|chr1:43699764:43700063:-	0	-
#Deleted in new
chr1	43699922	43700063	ENSG00000236200.5|KDM4A-AS1|lncRNA|chr1:43699922:43700063:-	0	-
#Deleted in new
chr1	43702096	43702728	ENSG00000236200.5|KDM4A-AS1|lncRNA|chr1:43702096:43702728:-	0	-
#Deleted in new
chr1	43702655	43702728	ENSG00000236200.5|KDM4A-AS1|lncRNA|chr1:43702655:43702728:-	0	-
#Deleted in new
chr1	43707058	43707330	ENSG00000236200.5|KDM4A-AS1|lncRNA|chr1:43707058:43707330:-	0	-
#Partially deleted in new
chr1	43707058	43707341	ENSG00000236200.5|KDM4A-AS1|lncRNA|chr1:43707058:43707341:-	0	-
#Deleted in new
chr1	43709391	43709535	ENSG00000229444.1|AL451062.1|lncRNA|chr1:43709391:43709535:-	0	-
#Deleted in new
chr14	37097061	37097182	ENSG00000258827.2|AL079304.1|lncRNA|chr14:37097061:37097182:-	0	-
#Partially deleted in new
chr14	37097856	37098563	ENSG00000258827.2|AL079304.1|lncRNA|chr14:37097856:37098563:-	0	-
#Deleted in new
chr14	37197912	37198104	ENSG00000151338.18|MIPOL1|pc|chr14:37197912:37198104:+	0	+
#Deleted in new
chr14	37197949	37198104	ENSG00000151338.18|MIPOL1|pc|chr14:37197949:37198104:+	0	+
#Deleted in new
chr14	37198009	37198104	ENSG00000151338.18|MIPOL1|pc|chr14:37198009:37198104:+	0	+
#Deleted in new
chr14	37198027	37198104	ENSG00000151338.18|MIPOL1|pc|chr14:37198027:37198104:+	0	+
#Deleted in new
chr14	37198036	37198104	ENSG00000151338.18|MIPOL1|pc|chr14:37198036:37198104:+	0	+
#Deleted in new
chr14	37198086	37198278	ENSG00000151338.18|MIPOL1|pc|chr14:37198086:37198278:+	0	+
#Deleted in new
chr1	43720470	43720551	ENSG00000229444.1|AL451062.1|lncRNA|chr1:43720470:43720551:-	0	-
#Deleted in new
chr14	37212229	37212356	ENSG00000151338.18|MIPOL1|pc|chr14:37212229:37212356:+	0	+
#Deleted in new
chr14	37219551	37219691	ENSG00000151338.18|MIPOL1|pc|chr14:37219551:37219691:+	0	+
#Deleted in new
chr14	37219552	37219691	ENSG00000151338.18|MIPOL1|pc|chr14:37219552:37219691:+	0	+
#Deleted in new
chr14	37227725	37227838	ENSG00000151338.18|MIPOL1|pc|chr14:37227725:37227838:+	0	+
#Deleted in new
chr1	43727232	43727343	ENSG00000229444.1|AL451062.1|lncRNA|chr1:43727232:43727343:-	0	-
#Deleted in new
chr14	37396975	37397014	ENSG00000151338.18|MIPOL1|pc|chr14:37396975:37397014:+	0	+
#Partially deleted in new
chr14	37501516	37507790	ENSG00000151338.18|MIPOL1|pc|chr14:37501516:37507790:+	0	+
#Deleted in new
chr14	37523472	37523569	ENSG00000151338.18|MIPOL1|pc|chr14:37523472:37523569:+	0	+
#Deleted in new
chr14	37556157	37556367	ENSG00000259087.5|AL121790.2|lncRNA|chr14:37556157:37556367:-	0	-
#Deleted in new
chr14	37772382	37772570	ENSG00000139865.16|TTC6|pc|chr14:37772382:37772570:+	0	+
#Deleted in new
chr14	37802093	37802390	ENSG00000139865.16|TTC6|pc|chr14:37802093:37802390:+	0	+
#Deleted in new
chr14	37837321	37837542	ENSG00000139865.16|TTC6|pc|chr14:37837321:37837542:+	0	+
#Deleted in new
chr14	37900875	37901292	ENSG00000259091.1|LINC00517|lncRNA|chr14:37900875:37901292:-	0	-
#Deleted in new
chr14	37916497	37916554	ENSG00000139865.16|TTC6|pc|chr14:37916497:37916554:+	0	+
#Deleted in new
chr14	37926178	37926307	ENSG00000139865.16|TTC6|pc|chr14:37926178:37926307:+	0	+
#Deleted in new
chr14	37936233	37936403	ENSG00000139865.16|TTC6|pc|chr14:37936233:37936403:+	0	+
#Deleted in new
chr14	38004739	38004847	ENSG00000258696.1|AL359233.1|lncRNA|chr14:38004739:38004847:-	0	-
#Deleted in new
chr14	38034286	38034693	ENSG00000259048.1|AL392023.2|lncRNA|chr14:38034286:38034693:-	0	-
#Deleted in new
chr14	38036802	38036854	ENSG00000259048.1|AL392023.2|lncRNA|chr14:38036802:38036854:-	0	-
#Deleted in new
chr14	38041257	38041442	ENSG00000139865.16|TTC6|pc|chr14:38041257:38041442:+	0	+
#Deleted in new
chr14	38190982	38191231	ENSG00000258649.1|AL392023.1|lncRNA|chr14:38190982:38191231:+	0	+
#Deleted in new
chr14	38193183	38193323	ENSG00000258649.1|AL392023.1|lncRNA|chr14:38193183:38193323:+	0	+
#Deleted in new
chr14	38194141	38194281	ENSG00000259048.1|AL392023.2|lncRNA|chr14:38194141:38194281:-	0	-
#Deleted in new
chr14	38298513	38298811	ENSG00000259072.1|AL161751.1|lncRNA|chr14:38298513:38298811:+	0	+
#Partially deleted in new
chr14	38835230	38835398	ENSG00000259070.5|LINC00639|lncRNA|chr14:38835230:38835398:-	0	-
#Split in new
chr14	38835541	38838458	ENSG00000259070.5|LINC00639|lncRNA|chr14:38835541:38838458:-	0	-
#Split in new
chr14	38835541	38839204	ENSG00000259070.5|LINC00639|lncRNA|chr14:38835541:38839204:-	0	-
#Deleted in new
chr14	38838845	38839204	ENSG00000259070.5|LINC00639|lncRNA|chr14:38838845:38839204:-	0	-
#Deleted in new
chr14	38838888	38839204	ENSG00000259070.5|LINC00639|lncRNA|chr14:38838888:38839204:-	0	-
#Deleted in new
chr14	38890740	38890798	ENSG00000259070.5|LINC00639|lncRNA|chr14:38890740:38890798:-	0	-
#Deleted in new
chr14	38916781	38916882	ENSG00000259070.5|LINC00639|lncRNA|chr14:38916781:38916882:-	0	-
#Deleted in new
chr14	38948177	38948206	ENSG00000259070.5|LINC00639|lncRNA|chr14:38948177:38948206:-	0	-
#Deleted in new
chr14	38948177	38948237	ENSG00000259070.5|LINC00639|lncRNA|chr14:38948177:38948237:-	0	-
#Deleted in new
chr14	38948177	38948239	ENSG00000259070.5|LINC00639|lncRNA|chr14:38948177:38948239:-	0	-
#Deleted in new
chr14	38948177	38948273	ENSG00000259070.5|LINC00639|lncRNA|chr14:38948177:38948273:-	0	-
#Partially deleted in new
chr14	39087523	39088723	ENSG00000100934.14|SEC23A|pc|chr14:39087523:39088723:-	0	-
#Partially deleted in new
chr14	39092760	39093244	ENSG00000100934.14|SEC23A|pc|chr14:39092760:39093244:-	0	-
#Deleted in new
chr14	39094897	39095014	ENSG00000100934.14|SEC23A|pc|chr14:39094897:39095014:-	0	-
#Deleted in new
chr14	39094897	39095017	ENSG00000100934.14|SEC23A|pc|chr14:39094897:39095017:-	0	-
#Deleted in new
chr14	39094977	39095017	ENSG00000100934.14|SEC23A|pc|chr14:39094977:39095017:-	0	-
#Deleted in new
chr14	39103544	39103812	ENSG00000258651.1|SEC23A-AS1|lncRNA|chr14:39103544:39103812:+	0	+
#Deleted in new
chr14	39103592	39103652	ENSG00000100934.14|SEC23A|pc|chr14:39103592:39103652:-	0	-
#Deleted in new
chr14	39103592	39103663	ENSG00000100934.14|SEC23A|pc|chr14:39103592:39103663:-	0	-
#Deleted in new
chr14	39103592	39103829	ENSG00000100934.14|SEC23A|pc|chr14:39103592:39103829:-	0	-
#Deleted in new
chr14	39109472	39109646	ENSG00000100934.14|SEC23A|pc|chr14:39109472:39109646:-	0	-
#Deleted in new
chr14	39121906	39122024	ENSG00000092208.16|GEMIN2|pc|chr14:39121906:39122024:+	0	+
#Deleted in new
chr14	39133820	39134370	ENSG00000092208.16|GEMIN2|pc|chr14:39133820:39134370:+	0	+
#Deleted in new
chr14	39230230	39230257	ENSG00000150527.17|CTAGE5|pc|chr14:39230230:39230257:+	0	+
#Deleted in new
chr14	39237145	39237270	ENSG00000150527.17|CTAGE5|pc|chr14:39237145:39237270:+	0	+
#Partially deleted in new
chr14	39386884	39388513	ENSG00000150527.17|CTAGE5|pc|chr14:39386884:39388513:+	0	+
#Deleted in new
chr1	43944369	43944796	ENSG00000237950.1|AL357079.1|lncRNA|chr1:43944369:43944796:-	0	-
#Deleted in new
chr1	43944371	43944474	ENSG00000237950.1|AL357079.1|lncRNA|chr1:43944371:43944474:-	0	-
#Deleted in new
chr1	43944373	43944796	ENSG00000237950.1|AL357079.1|lncRNA|chr1:43944373:43944796:-	0	-
#Deleted in new
chr1	43944648	43944796	ENSG00000237950.1|AL357079.1|lncRNA|chr1:43944648:43944796:-	0	-
#Deleted in new
chr14	39474839	39474955	ENSG00000258526.5|AL049875.1|lncRNA|chr14:39474839:39474955:+	0	+
#Deleted in new
chr14	39474855	39474955	ENSG00000258526.5|AL049875.1|lncRNA|chr14:39474855:39474955:+	0	+
#Deleted in new
chr14	39474934	39474955	ENSG00000258526.5|AL049875.1|lncRNA|chr14:39474934:39474955:+	0	+
#Partially deleted in new
chr14	39492254	39492556	ENSG00000258526.5|AL049875.1|lncRNA|chr14:39492254:39492556:+	0	+
#Partially deleted in new
chr14	39492254	39492770	ENSG00000258526.5|AL049875.1|lncRNA|chr14:39492254:39492770:+	0	+
#Deleted in new
chr14	39513616	39513780	ENSG00000258526.5|AL049875.1|lncRNA|chr14:39513616:39513780:+	0	+
#Deleted in new
chr14	40389076	40389140	ENSG00000258480.1|AL352977.2|lncRNA|chr14:40389076:40389140:+	0	+
#Deleted in new
chr1	44039906	44040023	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44039906:44040023:+	0	+
#Deleted in new
chr1	44039906	44040071	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44039906:44040071:+	0	+
#Deleted in new
chr1	44039906	44040273	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44039906:44040273:+	0	+
#Partially deleted in new
chr1	44044597	44045269	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44044597:44045269:+	0	+
#Deleted in new
chr1	44044762	44045269	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44044762:44045269:+	0	+
#Partially deleted in new
chr1	44047946	44048486	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44047946:44048486:+	0	+
#Deleted in new
chr1	44048274	44048384	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44048274:44048384:+	0	+
#Partially deleted in new
chr1	44048357	44048486	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44048357:44048486:+	0	+
#Partially deleted in new
chr1	44048362	44048486	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44048362:44048486:+	0	+
#Partially deleted in new
chr1	44048376	44048486	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44048376:44048486:+	0	+
#Deleted in new
chr1	44050949	44050962	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44050949:44050962:+	0	+
#Deleted in new
chr1	44050949	44051046	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44050949:44051046:+	0	+
#Deleted in new
chr1	44050949	44051115	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44050949:44051115:+	0	+
#Deleted in new
chr1	44050949	44051116	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44050949:44051116:+	0	+
#Deleted in new
chr1	44050949	44051158	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44050949:44051158:+	0	+
#Deleted in new
chr1	44050949	44051494	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44050949:44051494:+	0	+
#Deleted in new
chr1	44051113	44051494	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44051113:44051494:+	0	+
#Deleted in new
chr1	44051114	44051494	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44051114:44051494:+	0	+
#Deleted in new
chr1	44051192	44051494	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44051192:44051494:+	0	+
#Deleted in new
chr1	44051289	44051494	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44051289:44051494:+	0	+
#Deleted in new
chr1	44051289	44051531	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44051289:44051531:+	0	+
#Deleted in new
chr1	44052111	44052186	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44052111:44052186:+	0	+
#Deleted in new
chr1	44061131	44061214	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44061131:44061214:+	0	+
#Deleted in new
chr1	44061131	44061227	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44061131:44061227:+	0	+
#Deleted in new
chr1	44069880	44069934	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44069880:44069934:+	0	+
#Deleted in new
chr1	44074837	44074963	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44074837:44074963:+	0	+
#Deleted in new
chr1	44076090	44076192	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44076090:44076192:+	0	+
#Deleted in new
chr1	44076090	44076278	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44076090:44076278:+	0	+
#Deleted in new
chr1	44076090	44076412	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44076090:44076412:+	0	+
#Deleted in new
chr1	44076090	44076470	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44076090:44076470:+	0	+
#Deleted in new
chr1	44076090	44076505	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44076090:44076505:+	0	+
#Deleted in new
chr1	44076749	44076822	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44076749:44076822:+	0	+
#Deleted in new
chr14	40954897	40954952	ENSG00000251363.2|LINC02315|lncRNA|chr14:40954897:40954952:+	0	+
#Deleted in new
chr14	40974339	40974390	ENSG00000251363.2|LINC02315|lncRNA|chr14:40974339:40974390:+	0	+
#Deleted in new
chr1	44101559	44101615	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44101559:44101615:+	0	+
#Deleted in new
chr1	44104834	44105106	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44104834:44105106:+	0	+
#Deleted in new
chr1	44104908	44105106	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44104908:44105106:+	0	+
#Deleted in new
chr1	44104918	44105106	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44104918:44105106:+	0	+
#Deleted in new
chr1	44105420	44105514	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44105420:44105514:+	0	+
#Deleted in new
chr1	44105450	44105514	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44105450:44105514:+	0	+
#Deleted in new
chr1	44105498	44105514	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44105498:44105514:+	0	+
#Deleted in new
chr1	44106481	44106614	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44106481:44106614:+	0	+
#Deleted in new
chr1	44106855	44107055	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44106855:44107055:+	0	+
#Deleted in new
chr1	44106855	44107205	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44106855:44107205:+	0	+
#Deleted in new
chr1	44110393	44110597	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44110393:44110597:+	0	+
#Deleted in new
chr1	44113820	44114090	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44113820:44114090:+	0	+
#Deleted in new
chr1	44113820	44114925	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44113820:44114925:+	0	+
#Deleted in new
chr1	44115153	44115301	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44115153:44115301:+	0	+
#Deleted in new
chr1	44115358	44115913	ENSG00000230615.6|AL139220.2|lncRNA|chr1:44115358:44115913:+	0	+
#Deleted in new
chr1	44118849	44118988	ENSG00000171872.4|KLF17|pc|chr1:44118849:44118988:+	0	+
#Deleted in new
chr1	44118869	44118988	ENSG00000171872.4|KLF17|pc|chr1:44118869:44118988:+	0	+
#Deleted in new
chr1	4412026	4412349	ENSG00000235054.3|LINC01777|lncRNA|chr1:4412026:4412349:+	0	+
#Deleted in new
chr1	4412050	4412632	ENSG00000235054.3|LINC01777|lncRNA|chr1:4412050:4412632:+	0	+
#Deleted in new
chr1	4412123	4412349	ENSG00000235054.3|LINC01777|lncRNA|chr1:4412123:4412349:+	0	+
#Deleted in new
chr1	4412160	4412349	ENSG00000235054.3|LINC01777|lncRNA|chr1:4412160:4412349:+	0	+
#Split in new
chr1	44133237	44135140	ENSG00000171872.4|KLF17|pc|chr1:44133237:44135140:+	0	+
#Deleted in new
chr14	41587860	41588287	ENSG00000258636.1|AL121821.1|lncRNA|chr14:41587860:41588287:-	0	-
#Partially deleted in new
chr14	41699426	41701546	ENSG00000165379.13|LRFN5|pc|chr14:41699426:41701546:+	0	+
#Deleted in new
chr14	41731336	41731353	ENSG00000165379.13|LRFN5|pc|chr14:41731336:41731353:+	0	+
#Deleted in new
chr14	41731771	41731870	ENSG00000165379.13|LRFN5|pc|chr14:41731771:41731870:+	0	+
#Deleted in new
chr14	41733470	41733632	ENSG00000165379.13|LRFN5|pc|chr14:41733470:41733632:+	0	+
#Deleted in new
chr1	44215305	44215536	ENSG00000178028.13|DMAP1|pc|chr1:44215305:44215536:+	0	+
#Deleted in new
chr14	42259730	42259953	ENSG00000259149.1|AL445074.1|lncRNA|chr14:42259730:42259953:-	0	-
#Deleted in new
chr14	42268491	42268586	ENSG00000259149.1|AL445074.1|lncRNA|chr14:42268491:42268586:-	0	-
#Deleted in new
chr1	4423347	4423448	ENSG00000235054.3|LINC01777|lncRNA|chr1:4423347:4423448:+	0	+
#Deleted in new
chr14	42362982	42363000	ENSG00000258394.1|AL442163.1|lncRNA|chr14:42362982:42363000:+	0	+
#Deleted in new
chr14	42394944	42395092	ENSG00000258394.1|AL442163.1|lncRNA|chr14:42394944:42395092:+	0	+
#Deleted in new
chr1	4423993	4424687	ENSG00000235054.3|LINC01777|lncRNA|chr1:4423993:4424687:+	0	+
#Deleted in new
chr1	4423993	4424689	ENSG00000235054.3|LINC01777|lncRNA|chr1:4423993:4424689:+	0	+
#Deleted in new
chr14	42412572	42413206	ENSG00000258850.1|AL450442.1|lncRNA|chr14:42412572:42413206:+	0	+
#Partially deleted in new
chr1	44243407	44243997	ENSG00000233602.1|ERI3-IT1|lncRNA|chr1:44243407:44243997:-	0	-
#Deleted in new
chr14	43995780	43995843	ENSG00000258969.1|LINC02307|lncRNA|chr14:43995780:43995843:-	0	-
#Deleted in new
chr14	44049382	44049507	ENSG00000258969.1|LINC02307|lncRNA|chr14:44049382:44049507:-	0	-
#Deleted in new
chr14	44384476	44384545	ENSG00000258969.1|LINC02307|lncRNA|chr14:44384476:44384545:-	0	-
#Deleted in new
chr14	44444746	44444822	ENSG00000258487.1|LINC02277|lncRNA|chr14:44444746:44444822:-	0	-
#Deleted in new
chr14	44478719	44478851	ENSG00000258487.1|LINC02277|lncRNA|chr14:44478719:44478851:-	0	-
#Deleted in new
chr14	44478728	44478851	ENSG00000258487.1|LINC02277|lncRNA|chr14:44478728:44478851:-	0	-
#Deleted in new
chr14	44480509	44480617	ENSG00000258487.1|LINC02277|lncRNA|chr14:44480509:44480617:-	0	-
#Deleted in new
chr14	44480509	44480618	ENSG00000258487.1|LINC02277|lncRNA|chr14:44480509:44480618:-	0	-
#Deleted in new
chr14	44508651	44508729	ENSG00000258747.1|AL356022.1|lncRNA|chr14:44508651:44508729:+	0	+
#Deleted in new
chr14	44508968	44509231	ENSG00000258747.1|AL356022.1|lncRNA|chr14:44508968:44509231:+	0	+
#Deleted in new
chr14	44509002	44509231	ENSG00000258747.1|AL356022.1|lncRNA|chr14:44509002:44509231:+	0	+
#Deleted in new
chr14	44509326	44509483	ENSG00000258747.1|AL356022.1|lncRNA|chr14:44509326:44509483:+	0	+
#Deleted in new
chr14	44538273	44538511	ENSG00000258747.1|AL356022.1|lncRNA|chr14:44538273:44538511:+	0	+
#Deleted in new
chr14	44538273	44538513	ENSG00000258747.1|AL356022.1|lncRNA|chr14:44538273:44538513:+	0	+
#Partially deleted in new
chr14	44763156	44765626	ENSG00000258998.1|LINC02302|lncRNA|chr14:44763156:44765626:-	0	-
#Deleted in new
chr14	44766310	44766334	ENSG00000258998.1|LINC02302|lncRNA|chr14:44766310:44766334:-	0	-
#Deleted in new
chr14	44767994	44768129	ENSG00000258998.1|LINC02302|lncRNA|chr14:44767994:44768129:-	0	-
#Deleted in new
chr14	44782554	44782829	ENSG00000258998.1|LINC02302|lncRNA|chr14:44782554:44782829:-	0	-
#Deleted in new
chr14	44876873	44877500	ENSG00000258633.1|AL049870.2|lncRNA|chr14:44876873:44877500:-	0	-
#Deleted in new
chr14	44911756	44911863	ENSG00000258949.1|AL049870.3|lncRNA|chr14:44911756:44911863:-	0	-
#Deleted in new
chr14	44953622	44953709	ENSG00000179454.13|KLHL28|pc|chr14:44953622:44953709:-	0	-
#Deleted in new
chr14	44978197	44978298	ENSG00000179454.13|KLHL28|pc|chr14:44978197:44978298:-	0	-
#Partially deleted in new
chr14	45006007	45008147	ENSG00000198718.12|TOGARAM1|pc|chr14:45006007:45008147:+	0	+
#Deleted in new
chr14	45022909	45022973	ENSG00000198718.12|TOGARAM1|pc|chr14:45022909:45022973:+	0	+
#Deleted in new
chr14	45042115	45042308	ENSG00000179454.13|KLHL28|pc|chr14:45042115:45042308:-	0	-
#Deleted in new
chr14	45042115	45042322	ENSG00000179454.13|KLHL28|pc|chr14:45042115:45042322:-	0	-
#Deleted in new
chr14	45079848	45080189	ENSG00000278147.1|AL121809.2|lncRNA|chr14:45079848:45080189:+	0	+
#Partially deleted in new
chr14	45083471	45083977	ENSG00000249163.3|AL121809.1|lncRNA|chr14:45083471:45083977:-	0	-
#Deleted in new
chr14	45180834	45180889	ENSG00000187790.10|FANCM|pc|chr14:45180834:45180889:+	0	+
#Deleted in new
chr14	45195480	45195585	ENSG00000187790.10|FANCM|pc|chr14:45195480:45195585:+	0	+
#Deleted in new
chr14	45226742	45226836	ENSG00000129534.13|MIS18BP1|pc|chr14:45226742:45226836:-	0	-
#Deleted in new
chr14	45226825	45226836	ENSG00000129534.13|MIS18BP1|pc|chr14:45226825:45226836:-	0	-
#Deleted in new
chr14	45227662	45227814	ENSG00000129534.13|MIS18BP1|pc|chr14:45227662:45227814:-	0	-
#Deleted in new
chr14	45227686	45227814	ENSG00000129534.13|MIS18BP1|pc|chr14:45227686:45227814:-	0	-
#Deleted in new
chr14	45227802	45227814	ENSG00000129534.13|MIS18BP1|pc|chr14:45227802:45227814:-	0	-
#Deleted in new
chr14	45232508	45232627	ENSG00000129534.13|MIS18BP1|pc|chr14:45232508:45232627:-	0	-
#Deleted in new
chr14	45232572	45232627	ENSG00000129534.13|MIS18BP1|pc|chr14:45232572:45232627:-	0	-
#Deleted in new
chr14	45250030	45250138	ENSG00000129534.13|MIS18BP1|pc|chr14:45250030:45250138:-	0	-
#Deleted in new
chr14	45388916	45389286	ENSG00000257900.2|AL162632.1|lncRNA|chr14:45388916:45389286:+	0	+
#Partially deleted in new
chr14	45568525	45569069	ENSG00000258845.1|AL139354.1|lncRNA|chr14:45568525:45569069:+	0	+
#Deleted in new
chr14	45714283	45714420	ENSG00000258616.5|LINC02303|lncRNA|chr14:45714283:45714420:-	0	-
#Deleted in new
chr14	45714283	45714431	ENSG00000258616.5|LINC02303|lncRNA|chr14:45714283:45714431:-	0	-
#Deleted in new
chr14	45714283	45714453	ENSG00000258616.5|LINC02303|lncRNA|chr14:45714283:45714453:-	0	-
#Deleted in new
chr14	45715349	45715487	ENSG00000258616.5|LINC02303|lncRNA|chr14:45715349:45715487:-	0	-
#Deleted in new
chr14	45715349	45715691	ENSG00000258616.5|LINC02303|lncRNA|chr14:45715349:45715691:-	0	-
#Deleted in new
chr14	45715349	45715952	ENSG00000258616.5|LINC02303|lncRNA|chr14:45715349:45715952:-	0	-
#Deleted in new
chr14	45940942	45941018	ENSG00000258700.5|LINC00871|lncRNA|chr14:45940942:45941018:+	0	+
#Deleted in new
chr14	46064158	46064216	ENSG00000258700.5|LINC00871|lncRNA|chr14:46064158:46064216:+	0	+
#Deleted in new
chr14	46211746	46211804	ENSG00000258700.5|LINC00871|lncRNA|chr14:46211746:46211804:+	0	+
#Deleted in new
chr14	46318812	46318861	ENSG00000258700.5|LINC00871|lncRNA|chr14:46318812:46318861:+	0	+
#Deleted in new
chr14	46438180	46438250	ENSG00000258700.5|LINC00871|lncRNA|chr14:46438180:46438250:+	0	+
#Deleted in new
chr14	46449907	46449954	ENSG00000258700.5|LINC00871|lncRNA|chr14:46449907:46449954:+	0	+
#Partially deleted in new
chr1	44648307	44649769	ENSG00000187147.17|RNF220|pc|chr1:44648307:44649769:+	0	+
#Deleted in new
chr14	46490191	46490287	ENSG00000258700.5|LINC00871|lncRNA|chr14:46490191:46490287:+	0	+
#Deleted in new
chr1	44684392	44684656	ENSG00000198520.10|C1orf228|pc|chr1:44684392:44684656:+	0	+
#Deleted in new
chr1	44689108	44689224	ENSG00000198520.10|C1orf228|pc|chr1:44689108:44689224:+	0	+
#Deleted in new
chr1	44692927	44693020	ENSG00000198520.10|C1orf228|pc|chr1:44692927:44693020:+	0	+
#Deleted in new
chr14	47626338	47626525	ENSG00000139915.19|MDGA2|pc|chr14:47626338:47626525:-	0	-
#Partially deleted in new
chr14	47764953	47767757	ENSG00000259129.5|LINC00648|lncRNA|chr14:47764953:47767757:-	0	-
#Deleted in new
chr14	47766685	47766927	ENSG00000259129.5|LINC00648|lncRNA|chr14:47766685:47766927:-	0	-
#Partially deleted in new
chr1	44776674	44777525	ENSG00000142937.11|RPS8|pc|chr1:44776674:44777525:+	0	+
#Deleted in new
chr14	47767064	47767268	ENSG00000259129.5|LINC00648|lncRNA|chr14:47767064:47767268:-	0	-
#Deleted in new
chr14	47767599	47767757	ENSG00000259129.5|LINC00648|lncRNA|chr14:47767599:47767757:-	0	-
#Deleted in new
chr14	47768830	47768910	ENSG00000259129.5|LINC00648|lncRNA|chr14:47768830:47768910:-	0	-
#Deleted in new
chr14	47789905	47789943	ENSG00000259129.5|LINC00648|lncRNA|chr14:47789905:47789943:-	0	-
#Deleted in new
chr14	47794971	47795014	ENSG00000259129.5|LINC00648|lncRNA|chr14:47794971:47795014:-	0	-
#Deleted in new
chr14	47794971	47795092	ENSG00000259129.5|LINC00648|lncRNA|chr14:47794971:47795092:-	0	-
#Partially deleted in new
chr1	44813637	44815585	ENSG00000222009.8|BTBD19|pc|chr1:44813637:44815585:+	0	+
#Deleted in new
chr1	44819843	44820704	ENSG00000117425.13|PTCH2|pc|chr1:44819843:44820704:-	0	-
#Deleted in new
chr14	48396507	48396550	ENSG00000258751.1|AL358335.2|lncRNA|chr14:48396507:48396550:-	0	-
#Deleted in new
chr14	48400479	48400557	ENSG00000258751.1|AL358335.2|lncRNA|chr14:48400479:48400557:-	0	-
#Deleted in new
chr14	48429185	48429243	ENSG00000258751.1|AL358335.2|lncRNA|chr14:48429185:48429243:-	0	-
#Deleted in new
chr14	48431927	48432051	ENSG00000258751.1|AL358335.2|lncRNA|chr14:48431927:48432051:-	0	-
#Deleted in new
chr1	44863003	44863161	ENSG00000070785.16|EIF2B3|pc|chr1:44863003:44863161:-	0	-
#Deleted in new
chr14	49069791	49069915	ENSG00000258868.1|AL110505.1|lncRNA|chr14:49069791:49069915:-	0	-
#Deleted in new
chr14	49070872	49070982	ENSG00000258868.1|AL110505.1|lncRNA|chr14:49070872:49070982:-	0	-
#Deleted in new
chr14	49077455	49077505	ENSG00000258868.1|AL110505.1|lncRNA|chr14:49077455:49077505:-	0	-
#Deleted in new
chr1	44924957	44925290	ENSG00000070785.16|EIF2B3|pc|chr1:44924957:44925290:-	0	-
#Deleted in new
chr1	44937256	44937348	ENSG00000070785.16|EIF2B3|pc|chr1:44937256:44937348:-	0	-
#Deleted in new
chr1	44940628	44940766	ENSG00000070785.16|EIF2B3|pc|chr1:44940628:44940766:-	0	-
#Partially deleted in new
chr14	49585297	49586049	ENSG00000213741.9|RPS29|pc|chr14:49585297:49586049:-	0	-
#Deleted in new
chr14	49585389	49585581	ENSG00000213741.9|RPS29|pc|chr14:49585389:49585581:-	0	-
#Partially deleted in new
chr14	49585517	49586049	ENSG00000213741.9|RPS29|pc|chr14:49585517:49586049:-	0	-
#Partially deleted in new
chr14	49598399	49598690	ENSG00000213741.9|RPS29|pc|chr14:49598399:49598690:-	0	-
#Deleted in new
chr14	49603551	49603618	ENSG00000165501.16|LRR1|pc|chr14:49603551:49603618:+	0	+
#Deleted in new
chr14	49612471	49612624	ENSG00000165501.16|LRR1|pc|chr14:49612471:49612624:+	0	+
#Deleted in new
chr14	49629290	49629555	ENSG00000258450.1|AL139099.3|lncRNA|chr14:49629290:49629555:-	0	-
#Deleted in new
chr14	49629754	49629890	ENSG00000258450.1|AL139099.3|lncRNA|chr14:49629754:49629890:-	0	-
#Deleted in new
chr14	49646569	49646694	ENSG00000100479.12|POLE2|pc|chr14:49646569:49646694:-	0	-
#Deleted in new
chr1	44969977	44970044	ENSG00000070785.16|EIF2B3|pc|chr1:44969977:44970044:-	0	-
#Deleted in new
chr1	44969987	44970044	ENSG00000070785.16|EIF2B3|pc|chr1:44969987:44970044:-	0	-
#Deleted in new
chr14	49700049	49700189	ENSG00000197776.7|KLHDC1|pc|chr14:49700049:49700189:+	0	+
#Deleted in new
chr14	49707666	49707764	ENSG00000258400.1|AL591767.1|lncRNA|chr14:49707666:49707764:-	0	-
#Deleted in new
chr14	49708322	49708792	ENSG00000258400.1|AL591767.1|lncRNA|chr14:49708322:49708792:-	0	-
#Deleted in new
chr1	44972476	44972574	ENSG00000070785.16|EIF2B3|pc|chr1:44972476:44972574:-	0	-
#Deleted in new
chr14	49751009	49751106	ENSG00000197776.7|KLHDC1|pc|chr14:49751009:49751106:+	0	+
#Deleted in new
chr14	49797372	49797465	ENSG00000165525.17|NEMF|pc|chr14:49797372:49797465:-	0	-
#Deleted in new
chr14	49818292	49818421	ENSG00000165525.17|NEMF|pc|chr14:49818292:49818421:-	0	-
#Deleted in new
chr14	49820095	49820456	ENSG00000165525.17|NEMF|pc|chr14:49820095:49820456:-	0	-
#Deleted in new
chr14	49849628	49849707	ENSG00000165525.17|NEMF|pc|chr14:49849628:49849707:-	0	-
#Deleted in new
chr14	49861175	49861244	ENSG00000282885.1|AL627171.2|lncRNA|chr14:49861175:49861244:-	0	-
#Deleted in new
chr14	49861556	49861896	ENSG00000282885.1|AL627171.2|lncRNA|chr14:49861556:49861896:-	0	-
#Partially deleted in new
chr14	49861602	49862316	ENSG00000282885.1|AL627171.2|lncRNA|chr14:49861602:49862316:-	0	-
#Deleted in new
chr14	49863828	49863920	ENSG00000282885.1|AL627171.2|lncRNA|chr14:49863828:49863920:-	0	-
#Deleted in new
chr14	49863828	49864326	ENSG00000282885.1|AL627171.2|lncRNA|chr14:49863828:49864326:-	0	-
#Deleted in new
chr14	49864171	49864288	ENSG00000282885.1|AL627171.2|lncRNA|chr14:49864171:49864288:-	0	-
#Deleted in new
chr14	49941935	49943892	ENSG00000214900.9|LINC01588|lncRNA|chr14:49941935:49943892:-	0	-
#Deleted in new
chr14	49943751	49943892	ENSG00000214900.9|LINC01588|lncRNA|chr14:49943751:49943892:-	0	-
#Partially deleted in new
chr14	49960538	49960619	ENSG00000214900.9|LINC01588|lncRNA|chr14:49960538:49960619:-	0	-
#Partially deleted in new
chr14	49960538	49960662	ENSG00000214900.9|LINC01588|lncRNA|chr14:49960538:49960662:-	0	-
#Deleted in new
chr14	49960543	49960619	ENSG00000214900.9|LINC01588|lncRNA|chr14:49960543:49960619:-	0	-
#Partially deleted in new
chr14	49991379	49992325	ENSG00000214900.9|LINC01588|lncRNA|chr14:49991379:49992325:-	0	-
#Deleted in new
chr14	49992255	49992325	ENSG00000214900.9|LINC01588|lncRNA|chr14:49992255:49992325:-	0	-
#Deleted in new
chr14	49992777	49992873	ENSG00000214900.9|LINC01588|lncRNA|chr14:49992777:49992873:-	0	-
#Deleted in new
chr14	49999926	50000058	ENSG00000214900.9|LINC01588|lncRNA|chr14:49999926:50000058:-	0	-
#Deleted in new
chr14	50042274	50042446	ENSG00000214900.9|LINC01588|lncRNA|chr14:50042274:50042446:-	0	-
#Deleted in new
chr14	50047466	50047589	ENSG00000214900.9|LINC01588|lncRNA|chr14:50047466:50047589:-	0	-
#Deleted in new
chr14	50083650	50084009	ENSG00000214900.9|LINC01588|lncRNA|chr14:50083650:50084009:-	0	-
#Deleted in new
chr14	50085129	50085298	ENSG00000214900.9|LINC01588|lncRNA|chr14:50085129:50085298:-	0	-
#Deleted in new
chr14	50089120	50089175	ENSG00000214900.9|LINC01588|lncRNA|chr14:50089120:50089175:-	0	-
#Deleted in new
chr14	50089120	50089195	ENSG00000214900.9|LINC01588|lncRNA|chr14:50089120:50089195:-	0	-
#Deleted in new
chr14	50089120	50089203	ENSG00000214900.9|LINC01588|lncRNA|chr14:50089120:50089203:-	0	-
#Deleted in new
chr14	50215373	50215432	ENSG00000100485.11|SOS2|pc|chr14:50215373:50215432:-	0	-
#Deleted in new
chr14	50245650	50246120	ENSG00000087299.11|L2HGDH|pc|chr14:50245650:50246120:-	0	-
#Deleted in new
chr14	50282442	50282504	ENSG00000087299.11|L2HGDH|pc|chr14:50282442:50282504:-	0	-
#Deleted in new
chr14	50293204	50293283	ENSG00000087299.11|L2HGDH|pc|chr14:50293204:50293283:-	0	-
#Deleted in new
chr14	50314590	50314626	ENSG00000125375.14|ATP5S|pc|chr14:50314590:50314626:+	0	+
#Partially deleted in new
chr14	50325608	50327059	ENSG00000125375.14|ATP5S|pc|chr14:50325608:50327059:+	0	+
#Deleted in new
chr14	50326525	50326773	ENSG00000259071.1|AL359397.2|lncRNA|chr14:50326525:50326773:-	0	-
#Deleted in new
chr14	50358023	50358144	ENSG00000100490.9|CDKL1|pc|chr14:50358023:50358144:-	0	-
#Deleted in new
chr14	50362185	50362394	ENSG00000100490.9|CDKL1|pc|chr14:50362185:50362394:-	0	-
#Deleted in new
chr14	50362889	50363037	ENSG00000100490.9|CDKL1|pc|chr14:50362889:50363037:-	0	-
#Deleted in new
chr14	50363220	50363314	ENSG00000100490.9|CDKL1|pc|chr14:50363220:50363314:-	0	-
#Deleted in new
chr14	50363844	50363976	ENSG00000100490.9|CDKL1|pc|chr14:50363844:50363976:-	0	-
#Deleted in new
chr14	50376336	50376419	ENSG00000100490.9|CDKL1|pc|chr14:50376336:50376419:-	0	-
#Deleted in new
chr14	50377540	50377729	ENSG00000100490.9|CDKL1|pc|chr14:50377540:50377729:-	0	-
#Deleted in new
chr14	50378176	50378432	ENSG00000100490.9|CDKL1|pc|chr14:50378176:50378432:-	0	-
#Deleted in new
chr14	50380104	50380232	ENSG00000100490.9|CDKL1|pc|chr14:50380104:50380232:-	0	-
#Deleted in new
chr14	50398312	50398345	ENSG00000258857.1|AL359397.1|lncRNA|chr14:50398312:50398345:+	0	+
#Deleted in new
chr14	50410445	50410648	ENSG00000100490.9|CDKL1|pc|chr14:50410445:50410648:-	0	-
#Deleted in new
chr14	50416425	50416461	ENSG00000100490.9|CDKL1|pc|chr14:50416425:50416461:-	0	-
#Deleted in new
chr14	50482651	50483149	ENSG00000012983.11|MAP4K5|pc|chr14:50482651:50483149:-	0	-
#Deleted in new
chr14	50532447	50532472	ENSG00000012983.11|MAP4K5|pc|chr14:50532447:50532472:-	0	-
#Deleted in new
chr14	50542498	50542584	ENSG00000012983.11|MAP4K5|pc|chr14:50542498:50542584:-	0	-
#Deleted in new
chr14	50630931	50631077	ENSG00000198513.11|ATL1|pc|chr14:50630931:50631077:+	0	+
#Deleted in new
chr14	50848121	50848149	ENSG00000258687.1|AL358334.1|lncRNA|chr14:50848121:50848149:+	0	+
#Deleted in new
chr14	50857890	50858169	ENSG00000100504.16|PYGL|pc|chr14:50857890:50858169:-	0	-
#Deleted in new
chr14	50891073	50891103	ENSG00000131969.14|ABHD12B|pc|chr14:50891073:50891103:+	0	+
#Deleted in new
chr14	50891267	50893569	ENSG00000131969.14|ABHD12B|pc|chr14:50891267:50893569:+	0	+
#Deleted in new
chr14	50893212	50893564	ENSG00000131969.14|ABHD12B|pc|chr14:50893212:50893564:+	0	+
#Deleted in new
chr14	50893581	50893758	ENSG00000131969.14|ABHD12B|pc|chr14:50893581:50893758:+	0	+
#Deleted in new
chr14	50893739	50893758	ENSG00000131969.14|ABHD12B|pc|chr14:50893739:50893758:+	0	+
#Deleted in new
chr14	50895563	50895722	ENSG00000131969.14|ABHD12B|pc|chr14:50895563:50895722:+	0	+
#Deleted in new
chr14	50956258	50960615	ENSG00000258711.2|AL358334.2|lncRNA|chr14:50956258:50960615:-	0	-
#Deleted in new
chr14	50961645	50962002	ENSG00000258711.2|AL358334.2|lncRNA|chr14:50961645:50962002:-	0	-
#Deleted in new
chr14	51304415	51304840	ENSG00000258955.1|LINC00519|lncRNA|chr14:51304415:51304840:-	0	-
#Deleted in new
chr14	51348506	51348560	ENSG00000258479.5|LINC00640|lncRNA|chr14:51348506:51348560:+	0	+
#Deleted in new
chr14	51349668	51349743	ENSG00000258479.5|LINC00640|lncRNA|chr14:51349668:51349743:+	0	+
#Deleted in new
chr14	51350194	51350372	ENSG00000258479.5|LINC00640|lncRNA|chr14:51350194:51350372:+	0	+
#Deleted in new
chr14	51350292	51350372	ENSG00000258479.5|LINC00640|lncRNA|chr14:51350292:51350372:+	0	+
#Deleted in new
chr14	51352581	51352722	ENSG00000258942.1|AL358332.1|lncRNA|chr14:51352581:51352722:-	0	-
#Deleted in new
chr14	51360717	51360926	ENSG00000258479.5|LINC00640|lncRNA|chr14:51360717:51360926:+	0	+
#Deleted in new
chr14	51361686	51362153	ENSG00000258942.1|AL358332.1|lncRNA|chr14:51361686:51362153:-	0	-
#Deleted in new
chr14	51365362	51365529	ENSG00000258479.5|LINC00640|lncRNA|chr14:51365362:51365529:+	0	+
#Deleted in new
chr14	51365362	51365545	ENSG00000258479.5|LINC00640|lncRNA|chr14:51365362:51365545:+	0	+
#Deleted in new
chr14	51365362	51365557	ENSG00000258479.5|LINC00640|lncRNA|chr14:51365362:51365557:+	0	+
#Deleted in new
chr14	51385560	51385603	ENSG00000258942.1|AL358332.1|lncRNA|chr14:51385560:51385603:-	0	-
#Deleted in new
chr14	51750559	51750774	ENSG00000259111.1|AL079307.2|lncRNA|chr14:51750559:51750774:+	0	+
#Deleted in new
chr14	51761106	51761262	ENSG00000259111.1|AL079307.2|lncRNA|chr14:51761106:51761262:+	0	+
#Split in new
chr14	51765275	51767140	ENSG00000258535.1|AL079307.1|lncRNA|chr14:51765275:51767140:+	0	+
#Deleted in new
chr14	51789712	51789815	ENSG00000258535.1|AL079307.1|lncRNA|chr14:51789712:51789815:+	0	+
#Deleted in new
chr14	51812207	51812337	ENSG00000258535.1|AL079307.1|lncRNA|chr14:51812207:51812337:+	0	+
#Deleted in new
chr14	51826194	51826230	ENSG00000186469.8|GNG2|pc|chr14:51826194:51826230:+	0	+
#Deleted in new
chr14	51826199	51826230	ENSG00000186469.8|GNG2|pc|chr14:51826199:51826230:+	0	+
#Partially deleted in new
chr14	51827667	51827807	ENSG00000186469.8|GNG2|pc|chr14:51827667:51827807:+	0	+
#Deleted in new
chr14	51913008	51913128	ENSG00000186469.8|GNG2|pc|chr14:51913008:51913128:+	0	+
#Deleted in new
chr14	51913008	51913336	ENSG00000186469.8|GNG2|pc|chr14:51913008:51913336:+	0	+
#Deleted in new
chr14	51913111	51913128	ENSG00000186469.8|GNG2|pc|chr14:51913111:51913128:+	0	+
#Deleted in new
chr14	51987162	51987219	ENSG00000258854.1|AL358333.1|lncRNA|chr14:51987162:51987219:-	0	-
#Deleted in new
chr14	52111121	52111321	ENSG00000258694.1|LINC02319|lncRNA|chr14:52111121:52111321:-	0	-
#Deleted in new
chr14	52123672	52123776	ENSG00000258694.1|LINC02319|lncRNA|chr14:52123672:52123776:-	0	-
#Deleted in new
chr14	52129580	52129625	ENSG00000258694.1|LINC02319|lncRNA|chr14:52129580:52129625:-	0	-
#Deleted in new
chr14	52269450	52269541	ENSG00000168229.3|PTGDR|pc|chr14:52269450:52269541:+	0	+
#Deleted in new
chr14	52462811	52462970	ENSG00000087301.8|TXNDC16|pc|chr14:52462811:52462970:-	0	-
#Deleted in new
chr14	52596916	52596982	ENSG00000180998.11|GPR137C|pc|chr14:52596916:52596982:+	0	+
#Deleted in new
chr14	52613670	52613718	ENSG00000180998.11|GPR137C|pc|chr14:52613670:52613718:+	0	+
#Deleted in new
chr14	52641521	52641566	ENSG00000258757.1|AL133453.1|lncRNA|chr14:52641521:52641566:+	0	+
#Partially deleted in new
chr14	52663800	52664202	ENSG00000197930.12|ERO1A|pc|chr14:52663800:52664202:-	0	-
#Partially deleted in new
chr14	52671794	52672235	ENSG00000197930.12|ERO1A|pc|chr14:52671794:52672235:-	0	-
#Partially deleted in new
chr14	52709574	52710335	ENSG00000100519.11|PSMC6|pc|chr14:52709574:52710335:+	0	+
#Partially deleted in new
chr14	52721499	52723874	ENSG00000100519.11|PSMC6|pc|chr14:52721499:52723874:+	0	+
#Deleted in new
chr14	52731593	52731712	ENSG00000198252.11|STYX|pc|chr14:52731593:52731712:+	0	+
#Deleted in new
chr14	52775236	52775946	ENSG00000259049.1|AL139317.3|lncRNA|chr14:52775236:52775946:+	0	+
#Deleted in new
chr14	52775863	52776046	ENSG00000100522.8|GNPNAT1|pc|chr14:52775863:52776046:-	0	-
#Deleted in new
chr14	52776351	52776600	ENSG00000259049.1|AL139317.3|lncRNA|chr14:52776351:52776600:+	0	+
#Deleted in new
chr14	52776848	52777081	ENSG00000100522.8|GNPNAT1|pc|chr14:52776848:52777081:-	0	-
#Deleted in new
chr14	52776861	52777140	ENSG00000259049.1|AL139317.3|lncRNA|chr14:52776861:52777140:+	0	+
#Deleted in new
chr14	52787832	52787871	ENSG00000100522.8|GNPNAT1|pc|chr14:52787832:52787871:-	0	-
#Deleted in new
chr14	52792874	52792960	ENSG00000258698.1|AL139317.1|lncRNA|chr14:52792874:52792960:-	0	-
#Deleted in new
chr14	52928019	52928399	ENSG00000073712.14|FERMT2|pc|chr14:52928019:52928399:-	0	-
#Deleted in new
chr14	52928345	52928420	ENSG00000073712.14|FERMT2|pc|chr14:52928345:52928420:-	0	-
#Deleted in new
chr14	53036754	53037073	ENSG00000258985.1|AL352979.2|lncRNA|chr14:53036754:53037073:+	0	+
#Deleted in new
chr14	53038204	53038251	ENSG00000258985.1|AL352979.2|lncRNA|chr14:53038204:53038251:+	0	+
#Deleted in new
chr1	45306113	45306209	ENSG00000162415.6|ZSWIM5|pc|chr1:45306113:45306209:-	0	-
#Deleted in new
chr14	53169053	53169275	ENSG00000237356.5|AL365295.1|lncRNA|chr14:53169053:53169275:+	0	+
#Deleted in new
chr14	53169704	53169777	ENSG00000237356.5|AL365295.1|lncRNA|chr14:53169704:53169777:+	0	+
#Deleted in new
chr14	53217711	53218055	ENSG00000237356.5|AL365295.1|lncRNA|chr14:53217711:53218055:+	0	+
#Deleted in new
chr14	53217890	53218055	ENSG00000237356.5|AL365295.1|lncRNA|chr14:53217890:53218055:+	0	+
#Partially deleted in new
chr1	45329888	45330068	ENSG00000132781.17|MUTYH|pc|chr1:45329888:45330068:-	0	-
#Deleted in new
chr14	53318030	53318138	ENSG00000237356.5|AL365295.1|lncRNA|chr14:53318030:53318138:+	0	+
#Deleted in new
chr14	53326600	53326711	ENSG00000237356.5|AL365295.1|lncRNA|chr14:53326600:53326711:+	0	+
#Deleted in new
chr14	53369451	53369501	ENSG00000237356.5|AL365295.1|lncRNA|chr14:53369451:53369501:+	0	+
#Deleted in new
chr14	53369454	53369501	ENSG00000237356.5|AL365295.1|lncRNA|chr14:53369454:53369501:+	0	+
#Deleted in new
chr1	45338185	45338656	ENSG00000132781.17|MUTYH|pc|chr1:45338185:45338656:-	0	-
#Deleted in new
chr1	45338506	45338656	ENSG00000132781.17|MUTYH|pc|chr1:45338506:45338656:-	0	-
#Partially deleted in new
chr14	53525810	53526242	ENSG00000237356.5|AL365295.1|lncRNA|chr14:53525810:53526242:+	0	+
#Deleted in new
chr14	53590942	53591374	ENSG00000237356.5|AL365295.1|lncRNA|chr14:53590942:53591374:+	0	+
#Deleted in new
chr14	53687198	53687258	ENSG00000237356.5|AL365295.1|lncRNA|chr14:53687198:53687258:+	0	+
#Deleted in new
chr14	54412834	54412840	ENSG00000100526.19|CDKN3|pc|chr14:54412834:54412840:+	0	+
#Deleted in new
chr14	54413605	54414219	ENSG00000100526.19|CDKN3|pc|chr14:54413605:54414219:+	0	+
#Deleted in new
chr14	54470708	54470897	ENSG00000258753.1|AL359792.1|lncRNA|chr14:54470708:54470897:+	0	+
#Partially deleted in new
chr14	54488606	54488658	ENSG00000197045.12|GMFB|pc|chr14:54488606:54488658:-	0	-
#Deleted in new
chr14	54523149	54523245	ENSG00000100532.11|CGRRF1|pc|chr14:54523149:54523245:+	0	+
#Deleted in new
chr14	54668791	54668845	ENSG00000020577.13|SAMD4A|pc|chr14:54668791:54668845:+	0	+
#Deleted in new
chr14	54701023	54701141	ENSG00000020577.13|SAMD4A|pc|chr14:54701023:54701141:+	0	+
#Deleted in new
chr14	55060361	55060782	ENSG00000168175.14|MAPK1IP1L|pc|chr14:55060361:55060782:+	0	+
#Deleted in new
chr14	55063851	55063938	ENSG00000168175.14|MAPK1IP1L|pc|chr14:55063851:55063938:+	0	+
#Partially deleted in new
chr14	55064615	55066206	ENSG00000168175.14|MAPK1IP1L|pc|chr14:55064615:55066206:+	0	+
#Split in new
chr14	55064615	55070192	ENSG00000168175.14|MAPK1IP1L|pc|chr14:55064615:55070192:+	0	+
#Partially deleted in new
chr1	45508795	45513382	ENSG00000132763.14|MMACHC|pc|chr1:45508795:45513382:+	0	+
#Deleted in new
chr1	45509432	45509508	ENSG00000132763.14|MMACHC|pc|chr1:45509432:45509508:+	0	+
#Deleted in new
chr1	45509974	45510505	ENSG00000132763.14|MMACHC|pc|chr1:45509974:45510505:+	0	+
#Deleted in new
chr14	55124109	55124158	ENSG00000131981.15|LGALS3|pc|chr14:55124109:55124158:+	0	+
#Deleted in new
chr14	55143447	55143721	ENSG00000131981.15|LGALS3|pc|chr14:55143447:55143721:+	0	+
#Duplicated in new
chr14	55148111	55148473	ENSG00000126787.12|DLGAP5|pc|chr14:55148111:55148473:-	0	-
#Duplicated in new
chr14	55148135	55148473	ENSG00000126787.12|DLGAP5|pc|chr14:55148135:55148473:-	0	-
#Deleted in new
chr14	55148593	55148684	ENSG00000126787.12|DLGAP5|pc|chr14:55148593:55148684:-	0	-
#Partially deleted in new
chr14	55150327	55150848	ENSG00000126787.12|DLGAP5|pc|chr14:55150327:55150848:-	0	-
#Deleted in new
chr14	55175893	55176018	ENSG00000126787.12|DLGAP5|pc|chr14:55175893:55176018:-	0	-
#Deleted in new
chr14	55191068	55191172	ENSG00000126787.12|DLGAP5|pc|chr14:55191068:55191172:-	0	-
#Deleted in new
chr14	55191068	55191176	ENSG00000126787.12|DLGAP5|pc|chr14:55191068:55191176:-	0	-
#Deleted in new
chr14	55196726	55197128	ENSG00000258050.2|AL139316.1|lncRNA|chr14:55196726:55197128:-	0	-
#Deleted in new
chr14	55198847	55199013	ENSG00000258050.2|AL139316.1|lncRNA|chr14:55198847:55199013:-	0	-
#Deleted in new
chr1	4552104	4552145	ENSG00000227169.2|Z98747.1|lncRNA|chr1:4552104:4552145:-	0	-
#Deleted in new
chr1	45522777	45523047	ENSG00000117450.13|PRDX1|pc|chr1:45522777:45523047:-	0	-
#Partially deleted in new
chr14	55318182	55318269	ENSG00000178974.9|FBXO34|pc|chr14:55318182:55318269:+	0	+
#Deleted in new
chr14	55335307	55335406	ENSG00000258455.1|AL158801.3|lncRNA|chr14:55335307:55335406:-	0	-
#Deleted in new
chr14	55339434	55339501	ENSG00000258455.1|AL158801.3|lncRNA|chr14:55339434:55339501:-	0	-
#Deleted in new
chr14	55354500	55354585	ENSG00000178974.9|FBXO34|pc|chr14:55354500:55354585:+	0	+
#Deleted in new
chr14	55355063	55355084	ENSG00000178974.9|FBXO34|pc|chr14:55355063:55355084:+	0	+
#Deleted in new
chr14	55355063	55355222	ENSG00000178974.9|FBXO34|pc|chr14:55355063:55355222:+	0	+
#Deleted in new
chr14	55361732	55361918	ENSG00000178974.9|FBXO34|pc|chr14:55361732:55361918:+	0	+
#Duplicated in new
chr14	55413540	55414455	ENSG00000182521.5|TBPL2|pc|chr14:55413540:55414455:-	0	-
#Deleted in new
chr14	55438794	55438905	ENSG00000182521.5|TBPL2|pc|chr14:55438794:55438905:-	0	-
#Deleted in new
chr14	55456467	55456726	ENSG00000182521.5|TBPL2|pc|chr14:55456467:55456726:-	0	-
#Deleted in new
chr14	55499277	55499493	ENSG00000186615.10|KTN1-AS1|lncRNA|chr14:55499277:55499493:-	0	-
#Partially deleted in new
chr14	55559071	55559150	ENSG00000126777.17|KTN1|pc|chr14:55559071:55559150:+	0	+
#Deleted in new
chr14	55561088	55561163	ENSG00000186615.10|KTN1-AS1|lncRNA|chr14:55561088:55561163:-	0	-
#Partially deleted in new
chr14	55576185	55577379	ENSG00000186615.10|KTN1-AS1|lncRNA|chr14:55576185:55577379:-	0	-
#Partially deleted in new
chr14	55576186	55577379	ENSG00000186615.10|KTN1-AS1|lncRNA|chr14:55576186:55577379:-	0	-
#Deleted in new
chr14	55601756	55601880	ENSG00000126777.17|KTN1|pc|chr14:55601756:55601880:+	0	+
#Deleted in new
chr14	55601791	55601880	ENSG00000126777.17|KTN1|pc|chr14:55601791:55601880:+	0	+
#Deleted in new
chr14	55651286	55651375	ENSG00000126777.17|KTN1|pc|chr14:55651286:55651375:+	0	+
#Deleted in new
chr14	55771630	55771705	ENSG00000258784.1|AL355773.1|lncRNA|chr14:55771630:55771705:+	0	+
#Partially deleted in new
chr14	55782066	55782774	ENSG00000258791.7|LINC00520|lncRNA|chr14:55782066:55782774:-	0	-
#Deleted in new
chr14	55782408	55782581	ENSG00000258791.7|LINC00520|lncRNA|chr14:55782408:55782581:-	0	-
#Deleted in new
chr14	55787926	55788376	ENSG00000258791.7|LINC00520|lncRNA|chr14:55787926:55788376:-	0	-
#Deleted in new
chr14	55794283	55794345	ENSG00000258791.7|LINC00520|lncRNA|chr14:55794283:55794345:-	0	-
#Deleted in new
chr14	55796602	55796639	ENSG00000258791.7|LINC00520|lncRNA|chr14:55796602:55796639:-	0	-
#Deleted in new
chr14	55796602	55796656	ENSG00000258791.7|LINC00520|lncRNA|chr14:55796602:55796656:-	0	-
#Deleted in new
chr14	55796602	55796674	ENSG00000258791.7|LINC00520|lncRNA|chr14:55796602:55796674:-	0	-
#Deleted in new
chr14	55796602	55796688	ENSG00000258791.7|LINC00520|lncRNA|chr14:55796602:55796688:-	0	-
#Deleted in new
chr1	45588650	45588948	ENSG00000132780.16|NASP|pc|chr1:45588650:45588948:+	0	+
#Deleted in new
chr14	55896546	55896589	ENSG00000259868.2|AL163952.1|lncRNA|chr14:55896546:55896589:+	0	+
#Deleted in new
chr14	55943639	55943812	ENSG00000259868.2|AL163952.1|lncRNA|chr14:55943639:55943812:+	0	+
#Deleted in new
chr1	45594693	45594757	ENSG00000132780.16|NASP|pc|chr1:45594693:45594757:+	0	+
#Deleted in new
chr1	45594693	45594773	ENSG00000132780.16|NASP|pc|chr1:45594693:45594773:+	0	+
#Deleted in new
chr1	45600384	45600457	ENSG00000132780.16|NASP|pc|chr1:45600384:45600457:+	0	+
#Partially deleted in new
chr1	45609299	45610995	ENSG00000132780.16|NASP|pc|chr1:45609299:45610995:+	0	+
#Partially deleted in new
chr1	45610553	45613248	ENSG00000132780.16|NASP|pc|chr1:45610553:45613248:+	0	+
#Deleted in new
chr14	56303489	56303669	ENSG00000259483.1|AL355073.1|lncRNA|chr14:56303489:56303669:-	0	-
#Deleted in new
chr14	56305837	56306394	ENSG00000275569.1|AL355073.2|lncRNA|chr14:56305837:56306394:+	0	+
#Deleted in new
chr14	56308738	56308909	ENSG00000259483.1|AL355073.1|lncRNA|chr14:56308738:56308909:-	0	-
#Deleted in new
chr14	56310100	56310213	ENSG00000259483.1|AL355073.1|lncRNA|chr14:56310100:56310213:-	0	-
#Deleted in new
chr14	56326179	56326208	ENSG00000259719.5|LINC02284|lncRNA|chr14:56326179:56326208:+	0	+
#Deleted in new
chr14	56344973	56345001	ENSG00000259719.5|LINC02284|lncRNA|chr14:56344973:56345001:+	0	+
#Deleted in new
chr1	45641669	45641811	ENSG00000159592.10|GPBP1L1|pc|chr1:45641669:45641811:-	0	-
#Deleted in new
chr14	56491332	56491581	ENSG00000070269.13|TMEM260|pc|chr14:56491332:56491581:+	0	+
#Partially deleted in new
chr1	45655189	45656159	ENSG00000159592.10|GPBP1L1|pc|chr1:45655189:45656159:-	0	-
#Deleted in new
chr14	56619357	56619466	ENSG00000070269.13|TMEM260|pc|chr14:56619357:56619466:+	0	+
#Deleted in new
chr14	56723136	56723308	ENSG00000259133.5|AL161757.5|lncRNA|chr14:56723136:56723308:-	0	-
#Deleted in new
chr14	56725889	56725987	ENSG00000259133.5|AL161757.5|lncRNA|chr14:56725889:56725987:-	0	-
#Deleted in new
chr14	56897539	56897648	ENSG00000248550.3|OTX2-AS1|lncRNA|chr14:56897539:56897648:+	0	+
#Deleted in new
chr14	56927568	56927718	ENSG00000248550.3|OTX2-AS1|lncRNA|chr14:56927568:56927718:+	0	+
#Deleted in new
chr14	56928879	56929039	ENSG00000248550.3|OTX2-AS1|lncRNA|chr14:56928879:56929039:+	0	+
#Deleted in new
chr14	56928879	56930833	ENSG00000248550.3|OTX2-AS1|lncRNA|chr14:56928879:56930833:+	0	+
#Partially deleted in new
chr1	45694683	45694967	ENSG00000230896.1|AL604028.1|lncRNA|chr1:45694683:45694967:-	0	-
#Deleted in new
chr1	45696761	45697075	ENSG00000230896.1|AL604028.1|lncRNA|chr1:45696761:45697075:-	0	-
#Deleted in new
chr1	45697058	45697332	ENSG00000197429.10|IPP|pc|chr1:45697058:45697332:-	0	-
#Deleted in new
chr1	45697930	45698055	ENSG00000197429.10|IPP|pc|chr1:45697930:45698055:-	0	-
#Deleted in new
chr14	57112194	57112660	ENSG00000258592.1|AL391152.1|lncRNA|chr14:57112194:57112660:-	0	-
#Partially deleted in new
chr14	57141993	57142102	ENSG00000248550.3|OTX2-AS1|lncRNA|chr14:57141993:57142102:+	0	+
#Deleted in new
chr1	4571480	4571629	ENSG00000232596.2|LINC01646|lncRNA|chr1:4571480:4571629:+	0	+
#Deleted in new
chr1	4571503	4571629	ENSG00000232596.2|LINC01646|lncRNA|chr1:4571503:4571629:+	0	+
#Deleted in new
chr14	57152043	57152177	ENSG00000248550.3|OTX2-AS1|lncRNA|chr14:57152043:57152177:+	0	+
#Deleted in new
chr1	4571547	4571629	ENSG00000232596.2|LINC01646|lncRNA|chr1:4571547:4571629:+	0	+
#Deleted in new
chr14	57211698	57211703	ENSG00000070367.15|EXOC5|pc|chr14:57211698:57211703:-	0	-
#Partially deleted in new
chr14	57232666	57233223	ENSG00000070367.15|EXOC5|pc|chr14:57232666:57233223:-	0	-
#Deleted in new
chr1	4572469	4572592	ENSG00000232596.2|LINC01646|lncRNA|chr1:4572469:4572592:+	0	+
#Deleted in new
chr14	57271135	57271365	ENSG00000053770.11|AP5M1|pc|chr14:57271135:57271365:+	0	+
#Deleted in new
chr14	57278421	57278608	ENSG00000053770.11|AP5M1|pc|chr14:57278421:57278608:+	0	+
#Partially deleted in new
chr14	57355445	57359410	ENSG00000259008.1|AL355834.1|lncRNA|chr14:57355445:57359410:+	0	+
#Deleted in new
chr14	57475313	57475704	ENSG00000100557.9|C14orf105|pc|chr14:57475313:57475704:-	0	-
#Deleted in new
chr14	57475581	57475704	ENSG00000100557.9|C14orf105|pc|chr14:57475581:57475704:-	0	-
#Partially deleted in new
chr14	57478602	57478981	ENSG00000100557.9|C14orf105|pc|chr14:57478602:57478981:-	0	-
#Deleted in new
chr14	57478778	57479025	ENSG00000100557.9|C14orf105|pc|chr14:57478778:57479025:-	0	-
#Deleted in new
chr14	57478916	57479025	ENSG00000100557.9|C14orf105|pc|chr14:57478916:57479025:-	0	-
#Deleted in new
chr14	57578631	57579005	ENSG00000259039.1|AL161804.1|lncRNA|chr14:57578631:57579005:+	0	+
#Deleted in new
chr14	57579425	57579514	ENSG00000151812.14|SLC35F4|pc|chr14:57579425:57579514:-	0	-
#Deleted in new
chr14	57602397	57602543	ENSG00000151812.14|SLC35F4|pc|chr14:57602397:57602543:-	0	-
#Deleted in new
chr14	57604007	57604255	ENSG00000151812.14|SLC35F4|pc|chr14:57604007:57604255:-	0	-
#Deleted in new
chr14	57604042	57604255	ENSG00000151812.14|SLC35F4|pc|chr14:57604042:57604255:-	0	-
#Deleted in new
chr14	57799411	57799507	ENSG00000151812.14|SLC35F4|pc|chr14:57799411:57799507:-	0	-
#Deleted in new
chr1	45786986	45787132	ENSG00000086015.20|MAST2|pc|chr1:45786986:45787132:+	0	+
#Deleted in new
chr14	57993544	57994525	ENSG00000259969.1|AL049838.1|lncRNA|chr14:57993544:57994525:-	0	-
#Deleted in new
chr14	58116115	58116507	ENSG00000139971.15|C14orf37|pc|chr14:58116115:58116507:-	0	-
#Deleted in new
chr14	58116123	58116507	ENSG00000139971.15|C14orf37|pc|chr14:58116123:58116507:-	0	-
#Partially deleted in new
chr14	58207048	58207183	ENSG00000131966.13|ACTR10|pc|chr14:58207048:58207183:+	0	+
#Deleted in new
chr1	4582276	4582574	ENSG00000232596.2|LINC01646|lncRNA|chr1:4582276:4582574:+	0	+
#Deleted in new
chr14	58231079	58231153	ENSG00000131966.13|ACTR10|pc|chr14:58231079:58231153:+	0	+
#Deleted in new
chr14	58264661	58265116	ENSG00000258682.1|AL132989.1|lncRNA|chr14:58264661:58265116:+	0	+
#Deleted in new
chr14	58265364	58267393	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58265364:58267393:-	0	-
#Deleted in new
chr14	58266607	58267393	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58266607:58267393:-	0	-
#Deleted in new
chr14	58266888	58267393	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58266888:58267393:-	0	-
#Deleted in new
chr14	58266984	58267393	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58266984:58267393:-	0	-
#Deleted in new
chr14	58267103	58267393	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58267103:58267393:-	0	-
#Partially deleted in new
chr14	58267473	58268139	ENSG00000100567.12|PSMA3|pc|chr14:58267473:58268139:+	0	+
#Deleted in new
chr14	58269560	58269681	ENSG00000258682.1|AL132989.1|lncRNA|chr14:58269560:58269681:+	0	+
#Partially deleted in new
chr14	58272400	58274135	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58272400:58274135:-	0	-
#Deleted in new
chr14	58272614	58272976	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58272614:58272976:-	0	-
#Partially deleted in new
chr14	58273637	58274114	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58273637:58274114:-	0	-
#Partially deleted in new
chr14	58273640	58274010	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58273640:58274010:-	0	-
#Deleted in new
chr14	58273935	58274010	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58273935:58274010:-	0	-
#Deleted in new
chr14	58273978	58274010	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58273978:58274010:-	0	-
#Deleted in new
chr14	58273978	58274135	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58273978:58274135:-	0	-
#Deleted in new
chr14	58274013	58274135	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58274013:58274135:-	0	-
#Deleted in new
chr14	58286639	58287023	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58286639:58287023:-	0	-
#Deleted in new
chr14	58288032	58289147	ENSG00000279636.2|LINC00216|lncRNA|chr14:58288032:58289147:+	0	+
#Deleted in new
chr14	58288032	58289158	ENSG00000279636.2|LINC00216|lncRNA|chr14:58288032:58289158:+	0	+
#Deleted in new
chr14	58288717	58288813	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58288717:58288813:-	0	-
#Deleted in new
chr14	58291634	58291707	ENSG00000139971.15|C14orf37|pc|chr14:58291634:58291707:-	0	-
#Deleted in new
chr14	58291634	58291707	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58291634:58291707:-	0	-
#Deleted in new
chr14	58293313	58293544	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58293313:58293544:-	0	-
#Deleted in new
chr14	58293501	58293926	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58293501:58293926:-	0	-
#Deleted in new
chr14	58293765	58295811	ENSG00000257621.7|PSMA3-AS1|lncRNA|chr14:58293765:58295811:-	0	-
#Deleted in new
chr14	58303537	58303761	ENSG00000032219.18|ARID4A|pc|chr14:58303537:58303761:+	0	+
#Deleted in new
chr1	4583082	4583178	ENSG00000232596.2|LINC01646|lncRNA|chr1:4583082:4583178:+	0	+
#Deleted in new
chr1	4583338	4583421	ENSG00000232596.2|LINC01646|lncRNA|chr1:4583338:4583421:+	0	+
#Deleted in new
chr1	4583341	4583708	ENSG00000232596.2|LINC01646|lncRNA|chr1:4583341:4583708:+	0	+
#Deleted in new
chr14	58395300	58395641	ENSG00000258658.1|AL139021.2|lncRNA|chr14:58395300:58395641:-	0	-
#Partially deleted in new
chr14	58398556	58398930	ENSG00000258378.1|AL139021.1|lncRNA|chr14:58398556:58398930:+	0	+
#Deleted in new
chr14	58433111	58433344	ENSG00000100578.14|KIAA0586|pc|chr14:58433111:58433344:+	0	+
#Deleted in new
chr14	58440069	58440160	ENSG00000100578.14|KIAA0586|pc|chr14:58440069:58440160:+	0	+
#Deleted in new
chr14	58440970	58441343	ENSG00000100578.14|KIAA0586|pc|chr14:58440970:58441343:+	0	+
#Deleted in new
chr14	58441220	58441280	ENSG00000100578.14|KIAA0586|pc|chr14:58441220:58441280:+	0	+
#Deleted in new
chr14	58441220	58441343	ENSG00000100578.14|KIAA0586|pc|chr14:58441220:58441343:+	0	+
#Deleted in new
chr14	58543882	58543967	ENSG00000100578.14|KIAA0586|pc|chr14:58543882:58543967:+	0	+
#Deleted in new
chr14	58894142	58894284	ENSG00000258583.5|LINC01500|lncRNA|chr14:58894142:58894284:+	0	+
#Deleted in new
chr14	58894142	58894331	ENSG00000258583.5|LINC01500|lncRNA|chr14:58894142:58894331:+	0	+
#Deleted in new
chr14	58894165	58894331	ENSG00000258583.5|LINC01500|lncRNA|chr14:58894165:58894331:+	0	+
#Deleted in new
chr14	59299714	59300015	ENSG00000100592.15|DAAM1|pc|chr14:59299714:59300015:+	0	+
#Deleted in new
chr1	4593051	4594009	ENSG00000232596.2|LINC01646|lncRNA|chr1:4593051:4594009:+	0	+
#Deleted in new
chr14	59357300	59357330	ENSG00000100592.15|DAAM1|pc|chr14:59357300:59357330:+	0	+
#Deleted in new
chr14	59429021	59429087	ENSG00000181619.11|GPR135|pc|chr14:59429021:59429087:-	0	-
#Deleted in new
chr14	59455683	59455760	ENSG00000181619.11|GPR135|pc|chr14:59455683:59455760:-	0	-
#Deleted in new
chr14	59456437	59456545	ENSG00000181619.11|GPR135|pc|chr14:59456437:59456545:-	0	-
#Deleted in new
chr14	59460362	59460592	ENSG00000126790.11|L3HYPDH|pc|chr14:59460362:59460592:-	0	-
#Deleted in new
chr14	59474438	59474526	ENSG00000126790.11|L3HYPDH|pc|chr14:59474438:59474526:-	0	-
#Deleted in new
chr14	59474453	59474526	ENSG00000126790.11|L3HYPDH|pc|chr14:59474453:59474526:-	0	-
#Deleted in new
chr14	59969115	59969402	ENSG00000258553.5|AL157911.1|lncRNA|chr14:59969115:59969402:-	0	-
#Deleted in new
chr14	59973462	59973513	ENSG00000258553.5|AL157911.1|lncRNA|chr14:59973462:59973513:-	0	-
#Split in new
chr14	60133969	60148221	ENSG00000126773.12|PCNX4|pc|chr14:60133969:60148221:+	0	+
#Deleted in new
chr14	60147324	60147407	ENSG00000126773.12|PCNX4|pc|chr14:60147324:60147407:+	0	+
#Deleted in new
chr14	60168691	60169131	ENSG00000126773.12|PCNX4|pc|chr14:60168691:60169131:+	0	+
#Deleted in new
chr14	60168691	60169133	ENSG00000126773.12|PCNX4|pc|chr14:60168691:60169133:+	0	+
#Deleted in new
chr14	60169696	60169771	ENSG00000100612.13|DHRS7|pc|chr14:60169696:60169771:-	0	-
#Deleted in new
chr14	60169696	60169843	ENSG00000100612.13|DHRS7|pc|chr14:60169696:60169843:-	0	-
#Deleted in new
chr14	60169696	60169856	ENSG00000100612.13|DHRS7|pc|chr14:60169696:60169856:-	0	-
#Deleted in new
chr14	60240126	60240454	ENSG00000254718.6|AL157756.1|lncRNA|chr14:60240126:60240454:-	0	-
#Deleted in new
chr14	60240131	60240454	ENSG00000254718.6|AL157756.1|lncRNA|chr14:60240131:60240454:-	0	-
#Deleted in new
chr14	60240141	60240454	ENSG00000254718.6|AL157756.1|lncRNA|chr14:60240141:60240454:-	0	-
#Partially deleted in new
chr14	60242762	60242870	ENSG00000254718.6|AL157756.1|lncRNA|chr14:60242762:60242870:-	0	-
#Partially deleted in new
chr14	60245167	60245336	ENSG00000254718.6|AL157756.1|lncRNA|chr14:60245167:60245336:-	0	-
#Partially deleted in new
chr14	60256761	60256866	ENSG00000100614.17|PPM1A|pc|chr14:60256761:60256866:+	0	+
#Deleted in new
chr14	60267214	60267291	ENSG00000100614.17|PPM1A|pc|chr14:60267214:60267291:+	0	+
#Deleted in new
chr14	60268292	60268435	ENSG00000100614.17|PPM1A|pc|chr14:60268292:60268435:+	0	+
#Deleted in new
chr14	60396468	60396608	ENSG00000179008.8|C14orf39|pc|chr14:60396468:60396608:-	0	-
#Deleted in new
chr14	60433310	60433413	ENSG00000179008.8|C14orf39|pc|chr14:60433310:60433413:-	0	-
#Partially deleted in new
chr1	46046817	46047175	ENSG00000226957.1|AL358075.1|lncRNA|chr1:46046817:46047175:+	0	+
#Deleted in new
chr1	46048077	46048368	ENSG00000226957.1|AL358075.1|lncRNA|chr1:46048077:46048368:+	0	+
#Deleted in new
chr14	60499295	60499430	ENSG00000179008.8|C14orf39|pc|chr14:60499295:60499430:-	0	-
#Partially deleted in new
chr1	46055794	46057434	ENSG00000117461.14|PIK3R3|pc|chr1:46055794:46057434:-	0	-
#Deleted in new
chr14	60753552	60753954	ENSG00000020426.10|MNAT1|pc|chr14:60753552:60753954:+	0	+
#Partially deleted in new
chr14	60808324	60809015	ENSG00000020426.10|MNAT1|pc|chr14:60808324:60809015:+	0	+
#Partially deleted in new
chr14	61004421	61004637	ENSG00000139974.15|SLC38A6|pc|chr14:61004421:61004637:+	0	+
#Deleted in new
chr14	61073847	61073941	ENSG00000139974.15|SLC38A6|pc|chr14:61073847:61073941:+	0	+
#Deleted in new
chr14	61078809	61078927	ENSG00000139974.15|SLC38A6|pc|chr14:61078809:61078927:+	0	+
#Deleted in new
chr14	61078829	61078927	ENSG00000139974.15|SLC38A6|pc|chr14:61078829:61078927:+	0	+
#Deleted in new
chr14	61298772	61298866	ENSG00000027075.14|PRKCH|pc|chr14:61298772:61298866:+	0	+
#Deleted in new
chr14	61299710	61299854	ENSG00000027075.14|PRKCH|pc|chr14:61299710:61299854:+	0	+
#Partially deleted in new
chr14	61303020	61307235	ENSG00000247287.2|AL359220.1|lncRNA|chr14:61303020:61307235:-	0	-
#Partially deleted in new
chr14	61307067	61307235	ENSG00000247287.2|AL359220.1|lncRNA|chr14:61307067:61307235:-	0	-
#Deleted in new
chr14	61353488	61353989	ENSG00000027075.14|PRKCH|pc|chr14:61353488:61353989:+	0	+
#Deleted in new
chr14	61442557	61442749	ENSG00000027075.14|PRKCH|pc|chr14:61442557:61442749:+	0	+
#Deleted in new
chr14	61476329	61476516	ENSG00000027075.14|PRKCH|pc|chr14:61476329:61476516:+	0	+
#Deleted in new
chr14	61565118	61565241	ENSG00000250548.6|AL355916.1|lncRNA|chr14:61565118:61565241:-	0	-
#Deleted in new
chr14	61565319	61565388	ENSG00000250548.6|AL355916.1|lncRNA|chr14:61565319:61565388:-	0	-
#Deleted in new
chr14	61650961	61651017	ENSG00000232774.7|FLJ22447|lncRNA|chr14:61650961:61651017:+	0	+
#Deleted in new
chr14	61656802	61656853	ENSG00000232774.7|FLJ22447|lncRNA|chr14:61656802:61656853:+	0	+
#Partially deleted in new
chr14	61657604	61657964	ENSG00000258989.1|AL355916.3|pc|chr14:61657604:61657964:+	0	+
#Partially deleted in new
chr14	61657604	61658696	ENSG00000232774.7|FLJ22447|lncRNA|chr14:61657604:61658696:+	0	+
#Partially deleted in new
chr14	61681040	61681575	ENSG00000258777.1|HIF1A-AS1|lncRNA|chr14:61681040:61681575:-	0	-
#Deleted in new
chr14	61715557	61715828	ENSG00000258667.1|HIF1A-AS2|lncRNA|chr14:61715557:61715828:-	0	-
#Deleted in new
chr1	46175728	46175847	ENSG00000117472.9|TSPAN1|pc|chr1:46175728:46175847:+	0	+
#Deleted in new
chr14	62114600	62114743	ENSG00000258903.1|AL390816.2|lncRNA|chr14:62114600:62114743:-	0	-
#Deleted in new
chr14	62139908	62139973	ENSG00000259142.1|LINC00644|lncRNA|chr14:62139908:62139973:-	0	-
#Deleted in new
chr14	62712239	62712716	ENSG00000140015.19|KCNH5|pc|chr14:62712239:62712716:-	0	-
#Partially deleted in new
chr1	46298283	46299890	ENSG00000132128.16|LRRC41|pc|chr1:46298283:46299890:-	0	-
#Deleted in new
chr14	63298125	63298780	ENSG00000258943.1|AL049871.1|lncRNA|chr14:63298125:63298780:-	0	-
#Deleted in new
chr14	63299322	63299547	ENSG00000258943.1|AL049871.1|lncRNA|chr14:63299322:63299547:-	0	-
#Deleted in new
chr14	63508124	63508238	ENSG00000154001.13|PPP2R5E|pc|chr14:63508124:63508238:-	0	-
#Deleted in new
chr14	63624927	63625033	ENSG00000140006.11|WDR89|pc|chr14:63624927:63625033:-	0	-
#Deleted in new
chr14	64084231	64085052	ENSG00000140009.18|ESR2|pc|chr14:64084231:64085052:-	0	-
#Deleted in new
chr14	64087418	64087487	ENSG00000054654.16|SYNE2|pc|chr14:64087418:64087487:+	0	+
#Partially deleted in new
chr14	64166785	64167034	ENSG00000054654.16|SYNE2|pc|chr14:64166785:64167034:+	0	+
#Deleted in new
chr14	64173898	64174009	ENSG00000054654.16|SYNE2|pc|chr14:64173898:64174009:+	0	+
#Partially deleted in new
chr14	64190601	64190614	ENSG00000054654.16|SYNE2|pc|chr14:64190601:64190614:+	0	+
#Partially deleted in new
chr14	64226706	64227614	ENSG00000140009.18|ESR2|pc|chr14:64226706:64227614:-	0	-
#Partially deleted in new
chr14	64227034	64227614	ENSG00000140009.18|ESR2|pc|chr14:64227034:64227614:-	0	-
#Deleted in new
chr14	64329430	64330921	ENSG00000214770.2|AL161756.1|lncRNA|chr14:64329430:64330921:-	0	-
#Deleted in new
chr14	64332212	64332315	ENSG00000214770.2|AL161756.1|lncRNA|chr14:64332212:64332315:-	0	-
#Deleted in new
chr14	64335834	64336720	ENSG00000214770.2|AL161756.1|lncRNA|chr14:64335834:64336720:-	0	-
#Deleted in new
chr14	64336412	64336569	ENSG00000214770.2|AL161756.1|lncRNA|chr14:64336412:64336569:-	0	-
#Deleted in new
chr14	64336412	64336720	ENSG00000140009.18|ESR2|pc|chr14:64336412:64336720:-	0	-
#Deleted in new
chr14	64337400	64337529	ENSG00000214770.2|AL161756.1|lncRNA|chr14:64337400:64337529:-	0	-
#Deleted in new
chr14	64337897	64338096	ENSG00000140009.18|ESR2|pc|chr14:64337897:64338096:-	0	-
#Deleted in new
chr14	64337897	64338112	ENSG00000140009.18|ESR2|pc|chr14:64337897:64338112:-	0	-
#Deleted in new
chr14	64337897	64338599	ENSG00000214770.2|AL161756.1|lncRNA|chr14:64337897:64338599:-	0	-
#Partially deleted in new
chr14	64349676	64351257	ENSG00000284664.1|AL161756.3|lncRNA|chr14:64349676:64351257:-	0	-
#Deleted in new
chr14	64351794	64352284	ENSG00000284664.1|AL161756.3|lncRNA|chr14:64351794:64352284:-	0	-
#Deleted in new
chr14	64390336	64390467	ENSG00000100714.15|MTHFD1|pc|chr14:64390336:64390467:+	0	+
#Deleted in new
chr14	64422934	64422979	ENSG00000258824.2|AL122035.1|lncRNA|chr14:64422934:64422979:-	0	-
#Deleted in new
chr1	46449486	46449598	ENSG00000224863.2|LINC01398|lncRNA|chr1:46449486:46449598:-	0	-
#Deleted in new
chr14	64514153	64514381	ENSG00000259116.1|AL049869.3|lncRNA|chr14:64514153:64514381:-	0	-
#Deleted in new
chr14	64518356	64518538	ENSG00000259116.1|AL049869.3|lncRNA|chr14:64518356:64518538:-	0	-
#Deleted in new
chr14	64535904	64535975	ENSG00000126803.9|HSPA2|pc|chr14:64535904:64535975:+	0	+
#Deleted in new
chr14	64551633	64551687	ENSG00000165807.7|PPP1R36|pc|chr14:64551633:64551687:+	0	+
#Deleted in new
chr14	64559364	64559526	ENSG00000259076.1|AL049869.2|lncRNA|chr14:64559364:64559526:-	0	-
#Deleted in new
chr14	64561787	64562028	ENSG00000165807.7|PPP1R36|pc|chr14:64561787:64562028:+	0	+
#Deleted in new
chr14	64596461	64596513	ENSG00000259076.1|AL049869.2|lncRNA|chr14:64596461:64596513:-	0	-
#Deleted in new
chr14	64596461	64596536	ENSG00000259076.1|AL049869.2|lncRNA|chr14:64596461:64596536:-	0	-
#Deleted in new
chr14	64723780	64723914	ENSG00000126822.16|PLEKHG3|pc|chr14:64723780:64723914:+	0	+
#Partially deleted in new
chr14	64930799	64930937	ENSG00000258289.8|CHURC1|pc|chr14:64930799:64930937:+	0	+
#Partially deleted in new
chr14	64939992	64940198	ENSG00000176153.11|GPX2|pc|chr14:64939992:64940198:-	0	-
#Deleted in new
chr14	64957939	64957988	ENSG00000139998.14|RAB15|pc|chr14:64957939:64957988:-	0	-
#Partially deleted in new
chr14	65003324	65003767	ENSG00000272158.1|AL139022.2|lncRNA|chr14:65003324:65003767:-	0	-
#Partially deleted in new
chr14	65021981	65022130	ENSG00000257365.7|FNTB|pc|chr14:65021981:65022130:+	0	+
#Partially deleted in new
chr14	65089917	65090019	ENSG00000259118.5|AL139022.1|lncRNA|chr14:65089917:65090019:+	0	+
#Deleted in new
chr14	65091845	65091865	ENSG00000259118.5|AL139022.1|lncRNA|chr14:65091845:65091865:+	0	+
#Deleted in new
chr14	65212892	65213926	ENSG00000255002.1|LINC02324|lncRNA|chr14:65212892:65213926:-	0	-
#Deleted in new
chr14	65246848	65246963	ENSG00000258760.1|AL355076.2|lncRNA|chr14:65246848:65246963:-	0	-
#Deleted in new
chr14	65247637	65247723	ENSG00000258760.1|AL355076.2|lncRNA|chr14:65247637:65247723:-	0	-
#Deleted in new
chr14	65269444	65269512	ENSG00000258760.1|AL355076.2|lncRNA|chr14:65269444:65269512:-	0	-
#Deleted in new
chr14	65457893	65458188	ENSG00000033170.16|FUT8|pc|chr14:65457893:65458188:+	0	+
#Deleted in new
chr14	65479706	65479784	ENSG00000033170.16|FUT8|pc|chr14:65479706:65479784:+	0	+
#Deleted in new
chr14	65516242	65516388	ENSG00000033170.16|FUT8|pc|chr14:65516242:65516388:+	0	+
#Partially deleted in new
chr1	46559669	46559811	ENSG00000269956.1|MKNK1-AS1|lncRNA|chr1:46559669:46559811:+	0	+
#Deleted in new
chr14	65636515	65636622	ENSG00000033170.16|FUT8|pc|chr14:65636515:65636622:+	0	+
#Deleted in new
chr14	65636516	65636622	ENSG00000033170.16|FUT8|pc|chr14:65636516:65636622:+	0	+
#Deleted in new
chr14	65645959	65646117	ENSG00000033170.16|FUT8|pc|chr14:65645959:65646117:+	0	+
#Deleted in new
chr14	65646519	65646598	ENSG00000033170.16|FUT8|pc|chr14:65646519:65646598:+	0	+
#Deleted in new
chr1	46571416	46571539	ENSG00000079277.19|MKNK1|pc|chr1:46571416:46571539:-	0	-
#Partially deleted in new
chr1	46593522	46593852	ENSG00000079277.19|MKNK1|pc|chr1:46593522:46593852:-	0	-
#Partially deleted in new
chr1	46594867	46595059	ENSG00000079277.19|MKNK1|pc|chr1:46594867:46595059:-	0	-
#Partially deleted in new
chr14	65957296	65957855	ENSG00000258847.1|AL391261.2|lncRNA|chr14:65957296:65957855:-	0	-
#Deleted in new
chr14	65986966	65987447	ENSG00000277651.1|AL391261.4|lncRNA|chr14:65986966:65987447:-	0	-
#Deleted in new
chr14	65988569	65988650	ENSG00000258847.1|AL391261.2|lncRNA|chr14:65988569:65988650:-	0	-
#Deleted in new
chr14	65989679	65989743	ENSG00000258847.1|AL391261.2|lncRNA|chr14:65989679:65989743:-	0	-
#Deleted in new
chr14	66004454	66004523	ENSG00000258847.1|AL391261.2|lncRNA|chr14:66004454:66004523:-	0	-
#Deleted in new
chr14	66111580	66111995	ENSG00000258502.5|LINC02290|lncRNA|chr14:66111580:66111995:+	0	+
#Deleted in new
chr14	66111630	66111771	ENSG00000258502.5|LINC02290|lncRNA|chr14:66111630:66111771:+	0	+
#Deleted in new
chr14	66111634	66111995	ENSG00000258502.5|LINC02290|lncRNA|chr14:66111634:66111995:+	0	+
#Partially deleted in new
chr14	66122639	66122878	ENSG00000258502.5|LINC02290|lncRNA|chr14:66122639:66122878:+	0	+
#Deleted in new
chr1	46614970	46615133	ENSG00000142961.14|MOB3C|pc|chr1:46614970:46615133:-	0	-
#Deleted in new
chr14	66212809	66213105	ENSG00000258561.1|AL359232.1|lncRNA|chr14:66212809:66213105:-	0	-
#Partially deleted in new
chr14	66213898	66213951	ENSG00000258561.1|AL359232.1|lncRNA|chr14:66213898:66213951:-	0	-
#Deleted in new
chr14	66230332	66230895	ENSG00000258561.1|AL359232.1|lncRNA|chr14:66230332:66230895:-	0	-
#Deleted in new
chr14	66411703	66411969	ENSG00000196553.15|CCDC196|pc|chr14:66411703:66411969:+	0	+
#Deleted in new
chr14	66460359	66460422	ENSG00000196553.15|CCDC196|pc|chr14:66460359:66460422:+	0	+
#Deleted in new
chr14	66494643	66494856	ENSG00000258561.1|AL359232.1|lncRNA|chr14:66494643:66494856:-	0	-
#Deleted in new
chr14	66504874	66504990	ENSG00000258561.1|AL359232.1|lncRNA|chr14:66504874:66504990:-	0	-
#Deleted in new
chr14	66505284	66505345	ENSG00000258561.1|AL359232.1|lncRNA|chr14:66505284:66505345:-	0	-
#Deleted in new
chr14	66551040	66551181	ENSG00000171723.15|GPHN|pc|chr14:66551040:66551181:+	0	+
#Deleted in new
chr14	66709356	66709458	ENSG00000171723.15|GPHN|pc|chr14:66709356:66709458:+	0	+
#Deleted in new
chr14	66823094	66823343	ENSG00000171723.15|GPHN|pc|chr14:66823094:66823343:+	0	+
#Partially deleted in new
chr14	66969675	66969816	ENSG00000258490.1|AL049835.1|lncRNA|chr14:66969675:66969816:-	0	-
#Deleted in new
chr14	67196773	67196884	ENSG00000172717.15|FAM71D|pc|chr14:67196773:67196884:+	0	+
#Deleted in new
chr14	67196953	67197029	ENSG00000172717.15|FAM71D|pc|chr14:67196953:67197029:+	0	+
#Deleted in new
chr14	67201430	67201747	ENSG00000172717.15|FAM71D|pc|chr14:67201430:67201747:+	0	+
#Deleted in new
chr14	67227470	67227734	ENSG00000172717.15|FAM71D|pc|chr14:67227470:67227734:+	0	+
#Partially deleted in new
chr14	67269700	67272059	ENSG00000072415.8|MPP5|pc|chr14:67269700:67272059:+	0	+
#Deleted in new
chr14	67304059	67304077	ENSG00000100554.11|ATP6V1D|pc|chr14:67304059:67304077:-	0	-
#Deleted in new
chr14	67336187	67336738	ENSG00000100554.11|ATP6V1D|pc|chr14:67336187:67336738:-	0	-
#Deleted in new
chr14	67336646	67336738	ENSG00000100554.11|ATP6V1D|pc|chr14:67336646:67336738:-	0	-
#Deleted in new
chr14	67336677	67336738	ENSG00000100554.11|ATP6V1D|pc|chr14:67336677:67336738:-	0	-
#Deleted in new
chr14	67337386	67337509	ENSG00000100554.11|ATP6V1D|pc|chr14:67337386:67337509:-	0	-
#Deleted in new
chr14	67353698	67353959	ENSG00000100554.11|ATP6V1D|pc|chr14:67353698:67353959:-	0	-
#Deleted in new
chr14	67447083	67447929	ENSG00000198133.8|TMEM229B|pc|chr14:67447083:67447929:-	0	-
#Deleted in new
chr14	67449936	67450034	ENSG00000198133.8|TMEM229B|pc|chr14:67449936:67450034:-	0	-
#Partially deleted in new
chr14	67467730	67467865	ENSG00000198133.8|TMEM229B|pc|chr14:67467730:67467865:-	0	-
#Partially deleted in new
chr1	46757837	46757932	ENSG00000142973.13|CYP4B1|pc|chr1:46757837:46757932:+	0	+
#Deleted in new
chr1	46757877	46757932	ENSG00000142973.13|CYP4B1|pc|chr1:46757877:46757932:+	0	+
#Deleted in new
chr14	67586367	67586456	ENSG00000054690.13|PLEKHH1|pc|chr14:67586367:67586456:+	0	+
#Partially deleted in new
chr14	67586410	67586949	ENSG00000054690.13|PLEKHH1|pc|chr14:67586410:67586949:+	0	+
#Deleted in new
chr14	67591808	67592436	ENSG00000100564.8|PIGH|pc|chr14:67591808:67592436:-	0	-
#Deleted in new
chr14	67592314	67592436	ENSG00000100564.8|PIGH|pc|chr14:67592314:67592436:-	0	-
#Deleted in new
chr14	67592403	67592436	ENSG00000100564.8|PIGH|pc|chr14:67592403:67592436:-	0	-
#Deleted in new
chr1	46764977	46765101	ENSG00000142973.13|CYP4B1|pc|chr1:46764977:46765101:+	0	+
#Deleted in new
chr1	46765684	46765843	ENSG00000142973.13|CYP4B1|pc|chr1:46765684:46765843:+	0	+
#Deleted in new
chr14	67663028	67663190	ENSG00000100568.10|VTI1B|pc|chr14:67663028:67663190:-	0	-
#Deleted in new
chr14	67663028	67663190	ENSG00000258466.5|AL049779.1|pc|chr14:67663028:67663190:-	0	-
#Deleted in new
chr1	46767524	46767644	ENSG00000142973.13|CYP4B1|pc|chr1:46767524:46767644:+	0	+
#Deleted in new
chr14	67686083	67686257	ENSG00000072042.12|RDH11|pc|chr14:67686083:67686257:-	0	-
#Deleted in new
chr14	67701885	67701935	ENSG00000139988.9|RDH12|pc|chr14:67701885:67701935:+	0	+
#Deleted in new
chr1	46772031	46772071	ENSG00000142973.13|CYP4B1|pc|chr1:46772031:46772071:+	0	+
#Deleted in new
chr14	67720813	67720899	ENSG00000139988.9|RDH12|pc|chr14:67720813:67720899:+	0	+
#Deleted in new
chr14	67720841	67720902	ENSG00000139988.9|RDH12|pc|chr14:67720841:67720902:+	0	+
#Deleted in new
chr14	67720847	67720902	ENSG00000139988.9|RDH12|pc|chr14:67720847:67720902:+	0	+
#Partially deleted in new
chr14	67796220	67797755	ENSG00000072121.15|ZFYVE26|pc|chr14:67796220:67797755:-	0	-
#Deleted in new
chr14	67843432	67843500	ENSG00000182185.18|RAD51B|pc|chr14:67843432:67843500:+	0	+
#Deleted in new
chr14	67857891	67858057	ENSG00000182185.18|RAD51B|pc|chr14:67857891:67858057:+	0	+
#Deleted in new
chr1	46790403	46790499	ENSG00000142973.13|CYP4B1|pc|chr1:46790403:46790499:+	0	+
#Deleted in new
chr14	67908304	67908853	ENSG00000182185.18|RAD51B|pc|chr14:67908304:67908853:+	0	+
#Deleted in new
chr14	68069568	68069647	ENSG00000182185.18|RAD51B|pc|chr14:68069568:68069647:+	0	+
#Deleted in new
chr1	46814753	46814759	ENSG00000142973.13|CYP4B1|pc|chr1:46814753:46814759:+	0	+
#Deleted in new
chr14	68468554	68468599	ENSG00000182185.18|RAD51B|pc|chr14:68468554:68468599:+	0	+
#Duplicated in new
chr14	68885424	68888263	ENSG00000072110.13|ACTN1|pc|chr14:68885424:68888263:-	0	-
#Deleted in new
chr14	68973780	68974264	ENSG00000072110.13|ACTN1|pc|chr14:68973780:68974264:-	0	-
#Deleted in new
chr14	68987344	68987463	ENSG00000259062.2|ACTN1-AS1|lncRNA|chr14:68987344:68987463:+	0	+
#Partially deleted in new
chr14	69089203	69091156	ENSG00000139990.17|DCAF5|pc|chr14:69089203:69091156:-	0	-
#Partially deleted in new
chr14	69183019	69184497	ENSG00000258957.1|AL359317.2|lncRNA|chr14:69183019:69184497:-	0	-
#Deleted in new
chr14	69190877	69191043	ENSG00000258957.1|AL359317.2|lncRNA|chr14:69190877:69191043:-	0	-
#Deleted in new
chr14	69203916	69204000	ENSG00000081177.18|EXD2|pc|chr14:69203916:69204000:+	0	+
#Deleted in new
chr14	69208829	69209082	ENSG00000081177.18|EXD2|pc|chr14:69208829:69209082:+	0	+
#Deleted in new
chr14	69213906	69214092	ENSG00000258957.1|AL359317.2|lncRNA|chr14:69213906:69214092:-	0	-
#Deleted in new
chr14	69224129	69224279	ENSG00000081177.18|EXD2|pc|chr14:69224129:69224279:+	0	+
#Deleted in new
chr14	69227949	69228012	ENSG00000081177.18|EXD2|pc|chr14:69227949:69228012:+	0	+
#Deleted in new
chr14	69239165	69239217	ENSG00000258520.1|AL359317.1|lncRNA|chr14:69239165:69239217:-	0	-
#Deleted in new
chr14	69357009	69359308	ENSG00000280073.1|AL157996.1|lncRNA|chr14:69357009:69359308:+	0	+
#Deleted in new
chr14	69428561	69429457	ENSG00000029364.11|SLC39A9|pc|chr14:69428561:69429457:+	0	+
#Deleted in new
chr14	69617121	69617648	ENSG00000273797.1|AL133445.2|lncRNA|chr14:69617121:69617648:+	0	+
#Deleted in new
chr14	69726899	69727191	ENSG00000100650.15|SRSF5|pc|chr14:69726899:69727191:+	0	+
#Deleted in new
chr14	69854130	69854340	ENSG00000198732.10|SMOC1|pc|chr14:69854130:69854340:+	0	+
#Deleted in new
chr14	69858505	69858646	ENSG00000198732.10|SMOC1|pc|chr14:69858505:69858646:+	0	+
#Deleted in new
chr14	69864161	69864214	ENSG00000198732.10|SMOC1|pc|chr14:69864161:69864214:+	0	+
#Deleted in new
chr14	70223764	70223848	ENSG00000258422.5|AL160191.1|lncRNA|chr14:70223764:70223848:+	0	+
#Deleted in new
chr14	70223775	70223848	ENSG00000258422.5|AL160191.1|lncRNA|chr14:70223775:70223848:+	0	+
#Deleted in new
chr14	70224006	70224197	ENSG00000258422.5|AL160191.1|lncRNA|chr14:70224006:70224197:+	0	+
#Deleted in new
chr14	70227571	70227704	ENSG00000258422.5|AL160191.1|lncRNA|chr14:70227571:70227704:+	0	+
#Deleted in new
chr14	70229301	70229569	ENSG00000258422.5|AL160191.1|lncRNA|chr14:70229301:70229569:+	0	+
#Deleted in new
chr14	70275295	70275360	ENSG00000259033.1|AL356804.1|lncRNA|chr14:70275295:70275360:+	0	+
#Deleted in new
chr14	70291476	70291859	ENSG00000259033.1|AL356804.1|lncRNA|chr14:70291476:70291859:+	0	+
#Deleted in new
chr14	70328165	70328230	ENSG00000133983.14|COX16|pc|chr14:70328165:70328230:-	0	-
#Deleted in new
chr14	70359219	70359300	ENSG00000133983.14|COX16|pc|chr14:70359219:70359300:-	0	-
#Deleted in new
chr14	70425811	70426090	ENSG00000257759.2|AL357153.2|lncRNA|chr14:70425811:70426090:-	0	-
#Deleted in new
chr14	70453406	70453509	ENSG00000257759.2|AL357153.2|lncRNA|chr14:70453406:70453509:-	0	-
#Deleted in new
chr14	70534796	70535015	ENSG00000134007.3|ADAM20|pc|chr14:70534796:70535015:-	0	-
#Deleted in new
chr14	70547281	70547464	ENSG00000257759.2|AL357153.2|lncRNA|chr14:70547281:70547464:-	0	-
#Deleted in new
chr14	70581256	70581488	ENSG00000133997.11|MED6|pc|chr14:70581256:70581488:-	0	-
#Partially deleted in new
chr14	70583220	70584130	ENSG00000133997.11|MED6|pc|chr14:70583220:70584130:-	0	-
#Partially deleted in new
chr14	70608797	70611350	ENSG00000245466.1|AL357153.1|lncRNA|chr14:70608797:70611350:-	0	-
#Deleted in new
chr14	70633761	70633858	ENSG00000245466.1|AL357153.1|lncRNA|chr14:70633761:70633858:-	0	-
#Deleted in new
chr14	70633761	70633858	ENSG00000259115.1|AL357153.3|lncRNA|chr14:70633761:70633858:-	0	-
#Deleted in new
chr14	70703694	70703787	ENSG00000258689.1|LINC01269|lncRNA|chr14:70703694:70703787:+	0	+
#Deleted in new
chr14	70765441	70765472	ENSG00000006432.15|MAP3K9|pc|chr14:70765441:70765472:-	0	-
#Deleted in new
chr14	70765441	70765487	ENSG00000006432.15|MAP3K9|pc|chr14:70765441:70765487:-	0	-
#Deleted in new
chr1	47080622	47080667	ENSG00000186160.4|CYP4Z1|pc|chr1:47080622:47080667:+	0	+
#Deleted in new
chr14	70815110	70815391	ENSG00000259153.1|AC004816.1|lncRNA|chr14:70815110:70815391:+	0	+
#Deleted in new
chr14	70815110	70815403	ENSG00000259153.1|AC004816.1|lncRNA|chr14:70815110:70815403:+	0	+
#Deleted in new
chr14	70822003	70822122	ENSG00000275630.1|AC004816.2|lncRNA|chr14:70822003:70822122:+	0	+
#Deleted in new
chr14	70823819	70823984	ENSG00000275630.1|AC004816.2|lncRNA|chr14:70823819:70823984:+	0	+
#Deleted in new
chr14	70942872	70942940	ENSG00000100731.15|PCNX1|pc|chr14:70942872:70942940:+	0	+
#Deleted in new
chr14	70965364	70965432	ENSG00000100731.15|PCNX1|pc|chr14:70965364:70965432:+	0	+
#Deleted in new
chr14	70965369	70965432	ENSG00000100731.15|PCNX1|pc|chr14:70965369:70965432:+	0	+
#Deleted in new
chr1	47096652	47097177	ENSG00000225506.2|CYP4A22-AS1|lncRNA|chr1:47096652:47097177:-	0	-
#Deleted in new
chr14	70969858	70969999	ENSG00000100731.15|PCNX1|pc|chr14:70969858:70969999:+	0	+
#Deleted in new
chr14	71053296	71053412	ENSG00000100731.15|PCNX1|pc|chr14:71053296:71053412:+	0	+
#Deleted in new
chr14	71060667	71060742	ENSG00000100731.15|PCNX1|pc|chr14:71060667:71060742:+	0	+
#Deleted in new
chr14	71078650	71078739	ENSG00000100731.15|PCNX1|pc|chr14:71078650:71078739:+	0	+
#Deleted in new
chr14	71092553	71093845	ENSG00000100731.15|PCNX1|pc|chr14:71092553:71093845:+	0	+
#Deleted in new
chr14	71141124	71143253	ENSG00000269927.1|AC004817.3|lncRNA|chr14:71141124:71143253:-	0	-
#Deleted in new
chr14	71181455	71182106	ENSG00000259907.1|AC004817.2|lncRNA|chr14:71181455:71182106:+	0	+
#Deleted in new
chr14	71212632	71212942	ENSG00000258517.1|AC004817.1|lncRNA|chr14:71212632:71212942:+	0	+
#Deleted in new
chr14	71217805	71218216	ENSG00000258517.1|AC004817.1|lncRNA|chr14:71217805:71218216:+	0	+
#Partially deleted in new
chr14	71219099	71222724	ENSG00000269945.1|AC004817.4|lncRNA|chr14:71219099:71222724:+	0	+
#Deleted in new
chr14	71292728	71292902	ENSG00000259146.3|AC005476.2|lncRNA|chr14:71292728:71292902:-	0	-
#Deleted in new
chr14	71295262	71295456	ENSG00000259146.3|AC005476.2|lncRNA|chr14:71295262:71295456:-	0	-
#Deleted in new
chr14	71310557	71310679	ENSG00000259146.3|AC005476.2|lncRNA|chr14:71310557:71310679:-	0	-
#Deleted in new
chr14	71379494	71379598	ENSG00000197555.9|SIPA1L1|pc|chr14:71379494:71379598:+	0	+
#Deleted in new
chr14	71400793	71400918	ENSG00000197555.9|SIPA1L1|pc|chr14:71400793:71400918:+	0	+
#Deleted in new
chr14	71467184	71467247	ENSG00000197555.9|SIPA1L1|pc|chr14:71467184:71467247:+	0	+
#Deleted in new
chr14	71512742	71512845	ENSG00000197555.9|SIPA1L1|pc|chr14:71512742:71512845:+	0	+
#Deleted in new
chr14	71528698	71528740	ENSG00000197555.9|SIPA1L1|pc|chr14:71528698:71528740:+	0	+
#Partially deleted in new
chr14	71598233	71598331	ENSG00000197555.9|SIPA1L1|pc|chr14:71598233:71598331:+	0	+
#Deleted in new
chr1	47177034	47177069	ENSG00000225506.2|CYP4A22-AS1|lncRNA|chr1:47177034:47177069:-	0	-
#Deleted in new
chr1	47179189	47179271	ENSG00000225506.2|CYP4A22-AS1|lncRNA|chr1:47179189:47179271:-	0	-
#Deleted in new
chr14	71848605	71848736	ENSG00000266869.1|AC005993.1|lncRNA|chr14:71848605:71848736:+	0	+
#Deleted in new
chr14	72421587	72421724	ENSG00000182732.16|RGS6|pc|chr14:72421587:72421724:+	0	+
#Deleted in new
chr14	72594326	72594363	ENSG00000258871.1|AC004828.1|lncRNA|chr14:72594326:72594363:-	0	-
#Deleted in new
chr14	72806009	72806057	ENSG00000205683.11|DPF3|pc|chr14:72806009:72806057:-	0	-
#Deleted in new
chr14	72926776	72926929	ENSG00000119599.16|DCAF4|pc|chr14:72926776:72926929:+	0	+
#Deleted in new
chr14	72926784	72926929	ENSG00000119599.16|DCAF4|pc|chr14:72926784:72926929:+	0	+
#Deleted in new
chr14	72935022	72935186	ENSG00000119599.16|DCAF4|pc|chr14:72935022:72935186:+	0	+
#Partially deleted in new
chr14	72941908	72942093	ENSG00000119599.16|DCAF4|pc|chr14:72941908:72942093:+	0	+
#Deleted in new
chr14	73064971	73065093	ENSG00000119707.13|RBM25|pc|chr14:73064971:73065093:+	0	+
#Deleted in new
chr14	73069852	73069920	ENSG00000119707.13|RBM25|pc|chr14:73069852:73069920:+	0	+
#Partially deleted in new
chr1	47312947	47313135	ENSG00000123473.15|STIL|pc|chr1:47312947:47313135:-	0	-
#Partially deleted in new
chr1	47312947	47313156	ENSG00000123473.15|STIL|pc|chr1:47312947:47313156:-	0	-
#Deleted in new
chr14	73138106	73138152	ENSG00000080815.18|PSEN1|pc|chr14:73138106:73138152:+	0	+
#Deleted in new
chr14	73138111	73138152	ENSG00000080815.18|PSEN1|pc|chr14:73138111:73138152:+	0	+
#Deleted in new
chr14	73139296	73139398	ENSG00000080815.18|PSEN1|pc|chr14:73139296:73139398:+	0	+
#Deleted in new
chr14	73146077	73146126	ENSG00000080815.18|PSEN1|pc|chr14:73146077:73146126:+	0	+
#Deleted in new
chr14	73160008	73160049	ENSG00000080815.18|PSEN1|pc|chr14:73160008:73160049:+	0	+
#Deleted in new
chr14	73160008	73160138	ENSG00000080815.18|PSEN1|pc|chr14:73160008:73160138:+	0	+
#Deleted in new
chr14	73167828	73169461	ENSG00000080815.18|PSEN1|pc|chr14:73167828:73169461:+	0	+
#Deleted in new
chr14	73208823	73208915	ENSG00000080815.18|PSEN1|pc|chr14:73208823:73208915:+	0	+
#Partially deleted in new
chr14	73264009	73264044	ENSG00000100767.15|PAPLN|pc|chr14:73264009:73264044:+	0	+
#Partially deleted in new
chr14	73272494	73274620	ENSG00000100767.15|PAPLN|pc|chr14:73272494:73274620:+	0	+
#Partially deleted in new
chr14	73272494	73274623	ENSG00000100767.15|PAPLN|pc|chr14:73272494:73274623:+	0	+
#Partially deleted in new
chr14	73272494	73274640	ENSG00000100767.15|PAPLN|pc|chr14:73272494:73274640:+	0	+
#Deleted in new
chr14	73273938	73274081	ENSG00000258944.1|AC004846.2|lncRNA|chr14:73273938:73274081:-	0	-
#Deleted in new
chr14	73409149	73409689	ENSG00000133961.19|NUMB|pc|chr14:73409149:73409689:-	0	-
#Deleted in new
chr14	73477124	73477175	ENSG00000251393.3|AC005280.1|lncRNA|chr14:73477124:73477175:+	0	+
#Deleted in new
chr14	73480871	73480922	ENSG00000187105.8|HEATR4|pc|chr14:73480871:73480922:-	0	-
#Deleted in new
chr14	73517232	73517483	ENSG00000258443.1|AC005225.1|lncRNA|chr14:73517232:73517483:-	0	-
#Deleted in new
chr14	73527228	73527397	ENSG00000187105.8|HEATR4|pc|chr14:73527228:73527397:-	0	-
#Deleted in new
chr14	73528952	73529186	ENSG00000187105.8|HEATR4|pc|chr14:73528952:73529186:-	0	-
#Deleted in new
chr14	73530165	73530244	ENSG00000187105.8|HEATR4|pc|chr14:73530165:73530244:-	0	-
#Deleted in new
chr14	73567619	73568129	ENSG00000119673.14|ACOT2|pc|chr14:73567619:73568129:+	0	+
#Duplicated in new
chr14	73569058	73569883	ENSG00000119673.14|ACOT2|pc|chr14:73569058:73569883:+	0	+
#Deleted in new
chr14	73574303	73574407	ENSG00000119673.14|ACOT2|pc|chr14:73574303:73574407:+	0	+
#Deleted in new
chr14	73580693	73582918	ENSG00000279026.1|AC005225.5|lncRNA|chr14:73580693:73582918:+	0	+
#Deleted in new
chr1	47358297	47358875	ENSG00000162368.13|CMPK1|pc|chr1:47358297:47358875:+	0	+
#Deleted in new
chr14	73610944	73611041	ENSG00000205669.2|ACOT6|pc|chr14:73610944:73611041:+	0	+
#Deleted in new
chr14	73611515	73611597	ENSG00000205669.2|ACOT6|pc|chr14:73611515:73611597:+	0	+
#Deleted in new
chr14	73633660	73633778	ENSG00000258603.3|AC005225.2|lncRNA|chr14:73633660:73633778:-	0	-
#Deleted in new
chr14	73633660	73633941	ENSG00000258603.3|AC005225.2|lncRNA|chr14:73633660:73633941:-	0	-
#Deleted in new
chr14	73651166	73651327	ENSG00000119661.14|DNAL1|pc|chr14:73651166:73651327:+	0	+
#Deleted in new
chr14	73653169	73653215	ENSG00000119661.14|DNAL1|pc|chr14:73653169:73653215:+	0	+
#Deleted in new
chr14	73672944	73673091	ENSG00000119661.14|DNAL1|pc|chr14:73672944:73673091:+	0	+
#Deleted in new
chr14	73700163	73700351	ENSG00000258660.1|AC006146.1|lncRNA|chr14:73700163:73700351:-	0	-
#Partially deleted in new
chr14	73822558	73823492	ENSG00000258586.1|LINC02274|lncRNA|chr14:73822558:73823492:-	0	-
#Deleted in new
chr14	73829895	73830135	ENSG00000258586.1|LINC02274|lncRNA|chr14:73829895:73830135:-	0	-
#Deleted in new
chr14	73861083	73861726	ENSG00000140043.11|PTGR2|pc|chr14:73861083:73861726:+	0	+
#Deleted in new
chr1	47386247	47386356	ENSG00000225762.1|LINC01389|lncRNA|chr1:47386247:47386356:-	0	-
#Deleted in new
chr14	73874583	73874627	ENSG00000140043.11|PTGR2|pc|chr14:73874583:73874627:+	0	+
#Deleted in new
chr14	73895236	73895414	ENSG00000258653.3|AC005520.1|pc|chr14:73895236:73895414:+	0	+
#Deleted in new
chr14	73902205	73902226	ENSG00000119725.18|ZNF410|pc|chr14:73902205:73902226:+	0	+
#Deleted in new
chr14	73913066	73914872	ENSG00000258891.1|AC005480.1|lncRNA|chr14:73913066:73914872:-	0	-
#Deleted in new
chr14	73915632	73916806	ENSG00000258891.1|AC005480.1|lncRNA|chr14:73915632:73916806:-	0	-
#Deleted in new
chr14	73924701	73924803	ENSG00000119725.18|ZNF410|pc|chr14:73924701:73924803:+	0	+
#Deleted in new
chr14	73924701	73924819	ENSG00000119725.18|ZNF410|pc|chr14:73924701:73924819:+	0	+
#Deleted in new
chr14	73927106	73927228	ENSG00000119725.18|ZNF410|pc|chr14:73927106:73927228:+	0	+
#Deleted in new
chr14	73927106	73927232	ENSG00000119725.18|ZNF410|pc|chr14:73927106:73927232:+	0	+
#Deleted in new
chr14	73956428	73956482	ENSG00000119723.16|COQ6|pc|chr14:73956428:73956482:+	0	+
#Deleted in new
chr14	73956428	73956752	ENSG00000119723.16|COQ6|pc|chr14:73956428:73956752:+	0	+
#Partially deleted in new
chr14	73959414	73960866	ENSG00000119723.16|COQ6|pc|chr14:73959414:73960866:+	0	+
#Deleted in new
chr14	73996516	73996776	ENSG00000187097.12|ENTPD5|pc|chr14:73996516:73996776:-	0	-
#Deleted in new
chr14	74007695	74007812	ENSG00000187097.12|ENTPD5|pc|chr14:74007695:74007812:-	0	-
#Deleted in new
chr14	74011090	74011150	ENSG00000187097.12|ENTPD5|pc|chr14:74011090:74011150:-	0	-
#Deleted in new
chr14	74031796	74031911	ENSG00000119636.15|BBOF1|pc|chr14:74031796:74031911:+	0	+
#Deleted in new
chr14	74046760	74046878	ENSG00000119636.15|BBOF1|pc|chr14:74046760:74046878:+	0	+
#Deleted in new
chr14	74078195	74078352	ENSG00000119636.15|BBOF1|pc|chr14:74078195:74078352:+	0	+
#Deleted in new
chr14	74299898	74300035	ENSG00000119688.20|ABCD4|pc|chr14:74299898:74300035:-	0	-
#Deleted in new
chr14	74337722	74337884	ENSG00000133980.4|VRTN|pc|chr14:74337722:74337884:+	0	+
#Deleted in new
chr14	74656878	74656937	ENSG00000119682.16|AREL1|pc|chr14:74656878:74656937:-	0	-
#Deleted in new
chr14	74657068	74657162	ENSG00000119682.16|AREL1|pc|chr14:74657068:74657162:-	0	-
#Deleted in new
chr14	74660220	74660940	ENSG00000119682.16|AREL1|pc|chr14:74660220:74660940:-	0	-
#Deleted in new
chr14	74660891	74660940	ENSG00000119682.16|AREL1|pc|chr14:74660891:74660940:-	0	-
#Deleted in new
chr14	74678178	74678329	ENSG00000119682.16|AREL1|pc|chr14:74678178:74678329:-	0	-
#Deleted in new
chr14	74691058	74691150	ENSG00000119682.16|AREL1|pc|chr14:74691058:74691150:-	0	-
#Deleted in new
chr14	74698763	74698856	ENSG00000119682.16|AREL1|pc|chr14:74698763:74698856:-	0	-
#Deleted in new
chr14	74701668	74701774	ENSG00000119682.16|AREL1|pc|chr14:74701668:74701774:-	0	-
#Split in new
chr14	74734881	74738620	ENSG00000119616.11|FCF1|pc|chr14:74734881:74738620:+	0	+
#Deleted in new
chr14	74865255	74865332	ENSG00000119608.12|PROX2|pc|chr14:74865255:74865332:-	0	-
#Deleted in new
chr14	74871102	74871237	ENSG00000119608.12|PROX2|pc|chr14:74871102:74871237:-	0	-
#Partially deleted in new
chr14	74889274	74889669	ENSG00000119689.14|DLST|pc|chr14:74889274:74889669:+	0	+
#Partially deleted in new
chr14	74889274	74889733	ENSG00000119689.14|DLST|pc|chr14:74889274:74889733:+	0	+
#Partially deleted in new
chr14	74944563	74946275	ENSG00000119630.13|PGF|pc|chr14:74944563:74946275:-	0	-
#Deleted in new
chr14	75036592	75036742	ENSG00000119684.15|MLH3|pc|chr14:75036592:75036742:-	0	-
#Deleted in new
chr14	75059847	75060261	ENSG00000119640.8|ACYP1|pc|chr14:75059847:75060261:-	0	-
#Deleted in new
chr14	75061683	75061762	ENSG00000119640.8|ACYP1|pc|chr14:75061683:75061762:-	0	-
#Partially deleted in new
chr14	75084858	75085095	ENSG00000119638.12|NEK9|pc|chr14:75084858:75085095:-	0	-
#Deleted in new
chr14	75136771	75136930	ENSG00000259138.1|AL049780.2|lncRNA|chr14:75136771:75136930:+	0	+
#Deleted in new
chr14	75139073	75139171	ENSG00000170348.8|TMED10|pc|chr14:75139073:75139171:-	0	-
#Partially deleted in new
chr14	75271637	75271861	ENSG00000258820.5|AF111167.1|lncRNA|chr14:75271637:75271861:+	0	+
#Deleted in new
chr14	75605814	75605994	ENSG00000119686.9|FLVCR2|pc|chr14:75605814:75605994:+	0	+
#Deleted in new
chr14	75744376	75744726	ENSG00000119685.19|TTLL5|pc|chr14:75744376:75744726:+	0	+
#Deleted in new
chr14	75847670	75847698	ENSG00000259103.1|AF107885.2|lncRNA|chr14:75847670:75847698:-	0	-
#Partially deleted in new
chr14	75982792	75982836	ENSG00000119699.7|TGFB3|pc|chr14:75982792:75982836:-	0	-
#Partially deleted in new
chr14	76058170	76058674	ENSG00000119650.12|IFT43|pc|chr14:76058170:76058674:+	0	+
#Partially deleted in new
chr14	76083762	76084073	ENSG00000119650.12|IFT43|pc|chr14:76083762:76084073:+	0	+
#Partially deleted in new
chr14	76178207	76178322	ENSG00000089916.17|GPATCH2L|pc|chr14:76178207:76178322:+	0	+
#Deleted in new
chr14	76229807	76229953	ENSG00000089916.17|GPATCH2L|pc|chr14:76229807:76229953:+	0	+
#Deleted in new
chr14	76230328	76230419	ENSG00000089916.17|GPATCH2L|pc|chr14:76230328:76230419:+	0	+
#Deleted in new
chr14	76234522	76234926	ENSG00000089916.17|GPATCH2L|pc|chr14:76234522:76234926:+	0	+
#Deleted in new
chr14	76252050	76252108	ENSG00000089916.17|GPATCH2L|pc|chr14:76252050:76252108:+	0	+
#Deleted in new
chr14	76252050	76252108	ENSG00000258454.1|AC016526.2|lncRNA|chr14:76252050:76252108:+	0	+
#Deleted in new
chr14	76254072	76254342	ENSG00000089916.17|GPATCH2L|pc|chr14:76254072:76254342:+	0	+
#Deleted in new
chr14	76263199	76263474	ENSG00000258454.1|AC016526.2|lncRNA|chr14:76263199:76263474:+	0	+
#Deleted in new
chr14	76280942	76281153	ENSG00000258402.1|AC016526.1|lncRNA|chr14:76280942:76281153:-	0	-
#Deleted in new
chr14	76295913	76295980	ENSG00000258402.1|AC016526.1|lncRNA|chr14:76295913:76295980:-	0	-
#Deleted in new
chr14	76407401	76407596	ENSG00000119715.14|ESRRB|pc|chr14:76407401:76407596:+	0	+
#Deleted in new
chr14	76407537	76407596	ENSG00000119715.14|ESRRB|pc|chr14:76407537:76407596:+	0	+
#Deleted in new
chr14	76407542	76407596	ENSG00000119715.14|ESRRB|pc|chr14:76407542:76407596:+	0	+
#Partially deleted in new
chr14	76463210	76463427	ENSG00000119715.14|ESRRB|pc|chr14:76463210:76463427:+	0	+
#Deleted in new
chr14	76495362	76495580	ENSG00000259124.1|AC008050.1|lncRNA|chr14:76495362:76495580:-	0	-
#Partially deleted in new
chr14	76499862	76500066	ENSG00000119715.14|ESRRB|pc|chr14:76499862:76500066:+	0	+
#Deleted in new
chr14	76500694	76500704	ENSG00000119715.14|ESRRB|pc|chr14:76500694:76500704:+	0	+
#Deleted in new
chr14	76500694	76500865	ENSG00000119715.14|ESRRB|pc|chr14:76500694:76500865:+	0	+
#Deleted in new
chr14	76502156	76502260	ENSG00000259124.1|AC008050.1|lncRNA|chr14:76502156:76502260:-	0	-
#Deleted in new
chr14	76601476	76601592	ENSG00000259124.1|AC008050.1|lncRNA|chr14:76601476:76601592:-	0	-
#Deleted in new
chr14	76710657	76710815	ENSG00000258569.1|AC007376.2|lncRNA|chr14:76710657:76710815:-	0	-
#Deleted in new
chr14	76711682	76711861	ENSG00000258569.1|AC007376.2|lncRNA|chr14:76711682:76711861:-	0	-
#Deleted in new
chr14	76726518	76726712	ENSG00000259124.1|AC008050.1|lncRNA|chr14:76726518:76726712:-	0	-
#Deleted in new
chr14	76774283	76774913	ENSG00000259081.1|AF111169.4|lncRNA|chr14:76774283:76774913:-	0	-
#Deleted in new
chr14	76783692	76783851	ENSG00000258301.3|VASH1-AS1|lncRNA|chr14:76783692:76783851:-	0	-
#Deleted in new
chr14	76829090	76829163	ENSG00000100565.15|LRRC74A|pc|chr14:76829090:76829163:+	0	+
#Deleted in new
chr14	76962330	76962607	ENSG00000258602.1|LINC01629|lncRNA|chr14:76962330:76962607:+	0	+
#Deleted in new
chr14	76965614	76965802	ENSG00000258602.1|LINC01629|lncRNA|chr14:76965614:76965802:+	0	+
#Deleted in new
chr14	77048171	77048421	ENSG00000258473.1|AC007686.2|lncRNA|chr14:77048171:77048421:-	0	-
#Partially deleted in new
chr14	77066070	77066194	ENSG00000246548.3|LINC02288|lncRNA|chr14:77066070:77066194:+	0	+
#Deleted in new
chr14	77071709	77071772	ENSG00000258819.1|LINC02289|lncRNA|chr14:77071709:77071772:-	0	-
#Deleted in new
chr14	77074541	77075364	ENSG00000258819.1|LINC02289|lncRNA|chr14:77074541:77075364:-	0	-
#Deleted in new
chr14	77081361	77081500	ENSG00000258473.1|AC007686.2|lncRNA|chr14:77081361:77081500:-	0	-
#Deleted in new
chr14	77312297	77312379	ENSG00000009830.11|POMT2|pc|chr14:77312297:77312379:-	0	-
#Deleted in new
chr14	77312297	77312635	ENSG00000009830.11|POMT2|pc|chr14:77312297:77312635:-	0	-
#Deleted in new
chr14	77440259	77440496	ENSG00000151445.15|VIPAS39|pc|chr14:77440259:77440496:-	0	-
#Deleted in new
chr14	77468589	77468689	ENSG00000100591.7|AHSA1|pc|chr14:77468589:77468689:+	0	+
#Deleted in new
chr14	77468589	77468760	ENSG00000100591.7|AHSA1|pc|chr14:77468589:77468760:+	0	+
#Deleted in new
chr14	77468795	77468985	ENSG00000100591.7|AHSA1|pc|chr14:77468795:77468985:+	0	+
#Duplicated in new
chr14	77483826	77484565	ENSG00000100593.17|ISM2|pc|chr14:77483826:77484565:-	0	-
#Deleted in new
chr14	77535599	77536005	ENSG00000100596.6|SPTLC2|pc|chr14:77535599:77536005:-	0	-
#Deleted in new
chr14	77711740	77712038	ENSG00000119705.9|SLIRP|pc|chr14:77711740:77712038:+	0	+
#Partially deleted in new
chr14	77715771	77716351	ENSG00000119705.9|SLIRP|pc|chr14:77715771:77716351:+	0	+
#Deleted in new
chr14	77733936	77734046	ENSG00000119705.9|SLIRP|pc|chr14:77733936:77734046:+	0	+
#Deleted in new
chr14	77768451	77768465	ENSG00000197734.8|C14orf178|pc|chr14:77768451:77768465:+	0	+
#Deleted in new
chr14	77768451	77768523	ENSG00000197734.8|C14orf178|pc|chr14:77768451:77768523:+	0	+
#Deleted in new
chr14	77769397	77769728	ENSG00000197734.8|C14orf178|pc|chr14:77769397:77769728:+	0	+
#Deleted in new
chr14	77769397	77769742	ENSG00000197734.8|C14orf178|pc|chr14:77769397:77769742:+	0	+
#Deleted in new
chr14	77827853	77827971	ENSG00000063761.15|ADCK1|pc|chr14:77827853:77827971:+	0	+
#Deleted in new
chr14	77900558	77900674	ENSG00000063761.15|ADCK1|pc|chr14:77900558:77900674:+	0	+
#Deleted in new
chr14	79248596	79248685	ENSG00000258662.1|AC022469.2|lncRNA|chr14:79248596:79248685:-	0	-
#Deleted in new
chr14	79248921	79249023	ENSG00000258662.1|AC022469.2|lncRNA|chr14:79248921:79249023:-	0	-
#Deleted in new
chr14	79298794	79298908	ENSG00000021645.18|NRXN3|pc|chr14:79298794:79298908:+	0	+
#Deleted in new
chr14	79314050	79314149	ENSG00000021645.18|NRXN3|pc|chr14:79314050:79314149:+	0	+
#Partially deleted in new
chr14	79572843	79573011	ENSG00000021645.18|NRXN3|pc|chr14:79572843:79573011:+	0	+
#Partially deleted in new
chr14	79611417	79611830	ENSG00000259106.1|AC008056.2|lncRNA|chr14:79611417:79611830:-	0	-
#Deleted in new
chr14	79632277	79632391	ENSG00000259106.1|AC008056.2|lncRNA|chr14:79632277:79632391:-	0	-
#Deleted in new
chr14	79661665	79661779	ENSG00000258637.1|AC008056.1|lncRNA|chr14:79661665:79661779:-	0	-
#Deleted in new
chr14	79760647	79760798	ENSG00000258637.1|AC008056.1|lncRNA|chr14:79760647:79760798:-	0	-
#Deleted in new
chr14	79973956	79974169	ENSG00000258416.1|AF123462.1|lncRNA|chr14:79973956:79974169:-	0	-
#Deleted in new
chr14	80219389	80219497	ENSG00000258766.1|DIO2-AS1|lncRNA|chr14:80219389:80219497:+	0	+
#Deleted in new
chr14	80230900	80231054	ENSG00000211448.11|DIO2|pc|chr14:80230900:80231054:-	0	-
#Deleted in new
chr14	80278426	80278519	ENSG00000211448.11|DIO2|pc|chr14:80278426:80278519:-	0	-
#Deleted in new
chr14	80278428	80278519	ENSG00000211448.11|DIO2|pc|chr14:80278428:80278519:-	0	-
#Partially deleted in new
chr14	80358700	80358982	ENSG00000258766.1|DIO2-AS1|lncRNA|chr14:80358700:80358982:+	0	+
#Deleted in new
chr14	80397029	80397179	ENSG00000258766.1|DIO2-AS1|lncRNA|chr14:80397029:80397179:+	0	+
#Deleted in new
chr14	80527168	80527261	ENSG00000100629.16|CEP128|pc|chr14:80527168:80527261:-	0	-
#Partially deleted in new
chr1	48053544	48053747	ENSG00000226133.6|AL356289.1|lncRNA|chr1:48053544:48053747:+	0	+
#Partially deleted in new
chr1	48053545	48053747	ENSG00000226133.6|AL356289.1|lncRNA|chr1:48053545:48053747:+	0	+
#Deleted in new
chr1	48055069	48055196	ENSG00000226133.6|AL356289.1|lncRNA|chr1:48055069:48055196:+	0	+
#Deleted in new
chr1	48078786	48079024	ENSG00000231413.1|AL356289.2|lncRNA|chr1:48078786:48079024:-	0	-
#Deleted in new
chr1	48082142	48082196	ENSG00000231413.1|AL356289.2|lncRNA|chr1:48082142:48082196:-	0	-
#Partially deleted in new
chr1	48083946	48084032	ENSG00000226133.6|AL356289.1|lncRNA|chr1:48083946:48084032:+	0	+
#Deleted in new
chr14	80957797	80958285	ENSG00000100629.16|CEP128|pc|chr14:80957797:80958285:-	0	-
#Deleted in new
chr14	80958177	80958285	ENSG00000100629.16|CEP128|pc|chr14:80958177:80958285:-	0	-
#Deleted in new
chr14	81078701	81078936	ENSG00000165409.16|TSHR|pc|chr14:81078701:81078936:+	0	+
#Partially deleted in new
chr14	81108374	81108918	ENSG00000165409.16|TSHR|pc|chr14:81108374:81108918:+	0	+
#Deleted in new
chr14	81108548	81108919	ENSG00000165409.16|TSHR|pc|chr14:81108548:81108919:+	0	+
#Deleted in new
chr14	81108611	81108840	ENSG00000165409.16|TSHR|pc|chr14:81108611:81108840:+	0	+
#Deleted in new
chr14	81108611	81108950	ENSG00000165409.16|TSHR|pc|chr14:81108611:81108950:+	0	+
#Deleted in new
chr14	81165192	81165381	ENSG00000258999.1|AL136040.1|lncRNA|chr14:81165192:81165381:-	0	-
#Deleted in new
chr14	81170108	81170414	ENSG00000258999.1|AL136040.1|lncRNA|chr14:81170108:81170414:-	0	-
#Partially deleted in new
chr14	81209869	81209936	ENSG00000165417.11|GTF2A1|pc|chr14:81209869:81209936:-	0	-
#Deleted in new
chr14	81418162	81418253	ENSG00000140022.9|STON2|pc|chr14:81418162:81418253:-	0	-
#Deleted in new
chr14	81441986	81442196	ENSG00000258675.1|LINC02308|lncRNA|chr14:81441986:81442196:-	0	-
#Deleted in new
chr14	81442284	81442442	ENSG00000258675.1|LINC02308|lncRNA|chr14:81442284:81442442:-	0	-
#Partially deleted in new
chr14	81622652	81623061	ENSG00000258977.1|LINC01467|lncRNA|chr14:81622652:81623061:-	0	-
#Deleted in new
chr1	48172971	48173219	ENSG00000223720.2|AL109659.1|lncRNA|chr1:48172971:48173219:+	0	+
#Deleted in new
chr14	81740236	81740272	ENSG00000258718.1|LINC02311|lncRNA|chr14:81740236:81740272:-	0	-
#Deleted in new
chr14	81740236	81740276	ENSG00000258718.1|LINC02311|lncRNA|chr14:81740236:81740276:-	0	-
#Deleted in new
chr14	81741001	81741095	ENSG00000259035.1|AL355838.1|lncRNA|chr14:81741001:81741095:+	0	+
#Deleted in new
chr1	48198075	48198197	ENSG00000223720.2|AL109659.1|lncRNA|chr1:48198075:48198197:+	0	+
#Deleted in new
chr14	82030105	82030349	ENSG00000259035.1|AL355838.1|lncRNA|chr14:82030105:82030349:+	0	+
#Deleted in new
chr1	48205967	48206051	ENSG00000223720.2|AL109659.1|lncRNA|chr1:48205967:48206051:+	0	+
#Deleted in new
chr1	48206145	48206294	ENSG00000223720.2|AL109659.1|lncRNA|chr1:48206145:48206294:+	0	+
#Deleted in new
chr14	82642619	82642674	ENSG00000258743.5|LINC02301|lncRNA|chr14:82642619:82642674:+	0	+
#Deleted in new
chr14	82642626	82642674	ENSG00000258743.5|LINC02301|lncRNA|chr14:82642626:82642674:+	0	+
#Deleted in new
chr14	82642631	82642674	ENSG00000258743.5|LINC02301|lncRNA|chr14:82642631:82642674:+	0	+
#Deleted in new
chr14	82642635	82642674	ENSG00000258743.5|LINC02301|lncRNA|chr14:82642635:82642674:+	0	+
#Deleted in new
chr14	82650923	82650996	ENSG00000258743.5|LINC02301|lncRNA|chr14:82650923:82650996:+	0	+
#Deleted in new
chr14	82650923	82651657	ENSG00000258743.5|LINC02301|lncRNA|chr14:82650923:82651657:+	0	+
#Deleted in new
chr14	82706700	82706825	ENSG00000258743.5|LINC02301|lncRNA|chr14:82706700:82706825:+	0	+
#Deleted in new
chr14	82788477	82788867	ENSG00000258683.1|AL355095.1|lncRNA|chr14:82788477:82788867:-	0	-
#Deleted in new
chr14	83017494	83018144	ENSG00000258600.1|AL359238.1|lncRNA|chr14:83017494:83018144:-	0	-
#Deleted in new
chr14	83018200	83018552	ENSG00000258426.1|AL162872.1|lncRNA|chr14:83018200:83018552:-	0	-
#Deleted in new
chr14	83039506	83039602	ENSG00000258426.1|AL162872.1|lncRNA|chr14:83039506:83039602:-	0	-
#Deleted in new
chr14	83906871	83907181	ENSG00000258532.1|LINC02305|lncRNA|chr14:83906871:83907181:-	0	-
#Deleted in new
chr1	48393254	48393300	ENSG00000132122.11|SPATA6|pc|chr1:48393254:48393300:-	0	-
#Partially deleted in new
chr14	85234788	85234926	ENSG00000259044.1|AL357172.1|lncRNA|chr14:85234788:85234926:-	0	-
#Deleted in new
chr14	85387274	85387354	ENSG00000258814.1|LINC02329|lncRNA|chr14:85387274:85387354:+	0	+
#Partially deleted in new
chr14	85388616	85388765	ENSG00000258814.1|LINC02329|lncRNA|chr14:85388616:85388765:+	0	+
#Deleted in new
chr14	85405916	85405980	ENSG00000258902.1|AL049775.2|lncRNA|chr14:85405916:85405980:-	0	-
#Deleted in new
chr14	85407902	85408036	ENSG00000259107.1|LINC00911|lncRNA|chr14:85407902:85408036:+	0	+
#Deleted in new
chr14	85419683	85420052	ENSG00000259107.1|LINC00911|lncRNA|chr14:85419683:85420052:+	0	+
#Deleted in new
chr14	85419683	85420074	ENSG00000259107.1|LINC00911|lncRNA|chr14:85419683:85420074:+	0	+
#Deleted in new
chr14	85934709	85934861	ENSG00000258733.5|LINC02328|lncRNA|chr14:85934709:85934861:+	0	+
#Deleted in new
chr14	85983945	85984022	ENSG00000258733.5|LINC02328|lncRNA|chr14:85983945:85984022:+	0	+
#Deleted in new
chr14	86000860	86000953	ENSG00000258733.5|LINC02328|lncRNA|chr14:86000860:86000953:+	0	+
#Deleted in new
chr14	86014685	86015049	ENSG00000258912.1|LINC02316|lncRNA|chr14:86014685:86015049:-	0	-
#Deleted in new
chr14	86031135	86031230	ENSG00000258733.5|LINC02328|lncRNA|chr14:86031135:86031230:+	0	+
#Deleted in new
chr14	86054533	86054602	ENSG00000258912.1|LINC02316|lncRNA|chr14:86054533:86054602:-	0	-
#Deleted in new
chr14	86062881	86062960	ENSG00000258912.1|LINC02316|lncRNA|chr14:86062881:86062960:-	0	-
#Deleted in new
chr14	86070753	86070967	ENSG00000258733.5|LINC02328|lncRNA|chr14:86070753:86070967:+	0	+
#Deleted in new
chr14	86070862	86070967	ENSG00000258733.5|LINC02328|lncRNA|chr14:86070862:86070967:+	0	+
#Deleted in new
chr14	86104746	86105054	ENSG00000258733.5|LINC02328|lncRNA|chr14:86104746:86105054:+	0	+
#Deleted in new
chr14	86129495	86129778	ENSG00000258733.5|LINC02328|lncRNA|chr14:86129495:86129778:+	0	+
#Deleted in new
chr14	86336411	86336486	ENSG00000258994.1|LINC02309|lncRNA|chr14:86336411:86336486:+	0	+
#Deleted in new
chr14	86401211	86401285	ENSG00000258994.1|LINC02309|lncRNA|chr14:86401211:86401285:+	0	+
#Deleted in new
chr14	86905777	86906049	ENSG00000258804.1|LINC01148|lncRNA|chr14:86905777:86906049:+	0	+
#Deleted in new
chr14	86920260	86920334	ENSG00000258804.1|LINC01148|lncRNA|chr14:86920260:86920334:+	0	+
#Deleted in new
chr14	86921464	86922755	ENSG00000258804.1|LINC01148|lncRNA|chr14:86921464:86922755:+	0	+
#Deleted in new
chr14	86936639	86936827	ENSG00000259061.1|AL358292.1|lncRNA|chr14:86936639:86936827:+	0	+
#Deleted in new
chr14	86987987	86988052	ENSG00000259061.1|AL358292.1|lncRNA|chr14:86987987:86988052:+	0	+
#Deleted in new
chr14	87353069	87353110	ENSG00000258859.1|LINC02296|lncRNA|chr14:87353069:87353110:-	0	-
#Partially deleted in new
chr14	87368445	87368526	ENSG00000258859.1|LINC02296|lncRNA|chr14:87368445:87368526:-	0	-
#Deleted in new
chr14	87406379	87406487	ENSG00000258859.1|LINC02296|lncRNA|chr14:87406379:87406487:-	0	-
#Deleted in new
chr14	87568480	87568587	ENSG00000259028.1|AL135746.1|lncRNA|chr14:87568480:87568587:+	0	+
#Deleted in new
chr14	87569056	87569399	ENSG00000259028.1|AL135746.1|lncRNA|chr14:87569056:87569399:+	0	+
#Deleted in new
chr14	87635405	87635523	ENSG00000258770.1|LINC02330|lncRNA|chr14:87635405:87635523:-	0	-
#Deleted in new
chr14	87710418	87710790	ENSG00000258807.5|AL359237.1|lncRNA|chr14:87710418:87710790:-	0	-
#Deleted in new
chr14	87733867	87734298	ENSG00000258807.5|AL359237.1|lncRNA|chr14:87733867:87734298:-	0	-
#Deleted in new
chr14	87736401	87736989	ENSG00000258807.5|AL359237.1|lncRNA|chr14:87736401:87736989:-	0	-
#Deleted in new
chr14	87741485	87741548	ENSG00000258807.5|AL359237.1|lncRNA|chr14:87741485:87741548:-	0	-
#Deleted in new
chr14	87763705	87763810	ENSG00000258807.5|AL359237.1|lncRNA|chr14:87763705:87763810:-	0	-
#Deleted in new
chr14	87810981	87811070	ENSG00000259077.1|AL136501.1|lncRNA|chr14:87810981:87811070:+	0	+
#Deleted in new
chr14	87816131	87816251	ENSG00000258807.5|AL359237.1|lncRNA|chr14:87816131:87816251:-	0	-
#Partially deleted in new
chr14	87837819	87838233	ENSG00000054983.16|GALC|pc|chr14:87837819:87838233:-	0	-
#Partially deleted in new
chr14	87837841	87838339	ENSG00000259077.1|AL136501.1|lncRNA|chr14:87837841:87838339:+	0	+
#Deleted in new
chr14	87872274	87872291	ENSG00000258807.5|AL359237.1|lncRNA|chr14:87872274:87872291:-	0	-
#Deleted in new
chr14	87893355	87893473	ENSG00000054983.16|GALC|pc|chr14:87893355:87893473:-	0	-
#Deleted in new
chr14	87959552	87959713	ENSG00000054983.16|GALC|pc|chr14:87959552:87959713:-	0	-
#Deleted in new
chr14	87980504	87980648	ENSG00000054983.16|GALC|pc|chr14:87980504:87980648:-	0	-
#Deleted in new
chr14	87981202	87981447	ENSG00000054983.16|GALC|pc|chr14:87981202:87981447:-	0	-
#Deleted in new
chr14	87981413	87981447	ENSG00000054983.16|GALC|pc|chr14:87981413:87981447:-	0	-
#Deleted in new
chr14	87989573	87989647	ENSG00000054983.16|GALC|pc|chr14:87989573:87989647:-	0	-
#Deleted in new
chr14	87992303	87992405	ENSG00000054983.16|GALC|pc|chr14:87992303:87992405:-	0	-
#Deleted in new
chr14	88015516	88015611	ENSG00000258407.1|AL157955.1|lncRNA|chr14:88015516:88015611:-	0	-
#Deleted in new
chr14	88018604	88018703	ENSG00000258826.5|AL157955.2|lncRNA|chr14:88018604:88018703:-	0	-
#Deleted in new
chr14	88023674	88023765	ENSG00000258826.5|AL157955.2|lncRNA|chr14:88023674:88023765:-	0	-
#Deleted in new
chr14	88023674	88023776	ENSG00000258826.5|AL157955.2|lncRNA|chr14:88023674:88023776:-	0	-
#Deleted in new
chr14	88024549	88024669	ENSG00000258867.5|LINC01146|lncRNA|chr14:88024549:88024669:+	0	+
#Deleted in new
chr14	88024590	88024669	ENSG00000258867.5|LINC01146|lncRNA|chr14:88024590:88024669:+	0	+
#Deleted in new
chr14	88024608	88024669	ENSG00000258867.5|LINC01146|lncRNA|chr14:88024608:88024669:+	0	+
#Deleted in new
chr14	88024613	88024669	ENSG00000258867.5|LINC01146|lncRNA|chr14:88024613:88024669:+	0	+
#Deleted in new
chr14	88024617	88024669	ENSG00000258867.5|LINC01146|lncRNA|chr14:88024617:88024669:+	0	+
#Deleted in new
chr14	88036936	88037079	ENSG00000258867.5|LINC01146|lncRNA|chr14:88036936:88037079:+	0	+
#Partially deleted in new
chr14	88037350	88037439	ENSG00000258867.5|LINC01146|lncRNA|chr14:88037350:88037439:+	0	+
#Deleted in new
chr14	88079103	88079249	ENSG00000258867.5|LINC01146|lncRNA|chr14:88079103:88079249:+	0	+
#Deleted in new
chr14	88079103	88079368	ENSG00000258867.5|LINC01146|lncRNA|chr14:88079103:88079368:+	0	+
#Deleted in new
chr14	88079103	88079369	ENSG00000258867.5|LINC01146|lncRNA|chr14:88079103:88079369:+	0	+
#Deleted in new
chr14	88086827	88087346	ENSG00000258867.5|LINC01146|lncRNA|chr14:88086827:88087346:+	0	+
#Partially deleted in new
chr14	88096498	88097619	ENSG00000258867.5|LINC01146|lncRNA|chr14:88096498:88097619:+	0	+
#Deleted in new
chr14	88175390	88175481	ENSG00000258538.5|AL133279.1|lncRNA|chr14:88175390:88175481:+	0	+
#Deleted in new
chr14	88177071	88177152	ENSG00000258538.5|AL133279.1|lncRNA|chr14:88177071:88177152:+	0	+
#Deleted in new
chr14	88177132	88177152	ENSG00000258538.5|AL133279.1|lncRNA|chr14:88177132:88177152:+	0	+
#Deleted in new
chr14	88178466	88178601	ENSG00000258538.5|AL133279.1|lncRNA|chr14:88178466:88178601:+	0	+
#Deleted in new
chr14	88406682	88406736	ENSG00000042317.16|SPATA7|pc|chr14:88406682:88406736:+	0	+
#Deleted in new
chr14	88410663	88410783	ENSG00000042317.16|SPATA7|pc|chr14:88410663:88410783:+	0	+
#Deleted in new
chr14	88414673	88414732	ENSG00000042317.16|SPATA7|pc|chr14:88414673:88414732:+	0	+
#Deleted in new
chr14	88415204	88415266	ENSG00000042317.16|SPATA7|pc|chr14:88415204:88415266:+	0	+
#Partially deleted in new
chr14	88415925	88416844	ENSG00000042317.16|SPATA7|pc|chr14:88415925:88416844:+	0	+
#Deleted in new
chr14	88455059	88455283	ENSG00000042317.16|SPATA7|pc|chr14:88455059:88455283:+	0	+
#Deleted in new
chr14	88492899	88493158	ENSG00000070778.12|PTPN21|pc|chr14:88492899:88493158:-	0	-
#Deleted in new
chr14	88503876	88503928	ENSG00000258983.2|AL162171.2|lncRNA|chr14:88503876:88503928:+	0	+
#Deleted in new
chr14	88512317	88512587	ENSG00000070778.12|PTPN21|pc|chr14:88512317:88512587:-	0	-
#Deleted in new
chr14	88513909	88513985	ENSG00000258983.2|AL162171.2|lncRNA|chr14:88513909:88513985:+	0	+
#Deleted in new
chr14	88547528	88547651	ENSG00000070778.12|PTPN21|pc|chr14:88547528:88547651:-	0	-
#Partially deleted in new
chr14	88551596	88551819	ENSG00000258789.1|AL162171.1|lncRNA|chr14:88551596:88551819:+	0	+
#Deleted in new
chr14	88573692	88573758	ENSG00000100722.18|ZC3H14|pc|chr14:88573692:88573758:+	0	+
#Deleted in new
chr14	88574290	88574346	ENSG00000100722.18|ZC3H14|pc|chr14:88574290:88574346:+	0	+
#Deleted in new
chr14	88574429	88574522	ENSG00000100722.18|ZC3H14|pc|chr14:88574429:88574522:+	0	+
#Deleted in new
chr14	88586570	88586735	ENSG00000100722.18|ZC3H14|pc|chr14:88586570:88586735:+	0	+
#Deleted in new
chr14	88621756	88621904	ENSG00000165521.15|EML5|pc|chr14:88621756:88621904:-	0	-
#Deleted in new
chr14	88819607	88822151	ENSG00000274492.1|AL121768.1|lncRNA|chr14:88819607:88822151:-	0	-
#Deleted in new
chr14	88836907	88837066	ENSG00000165533.18|TTC8|pc|chr14:88836907:88837066:+	0	+
#Deleted in new
chr14	88846597	88846675	ENSG00000165533.18|TTC8|pc|chr14:88846597:88846675:+	0	+
#Deleted in new
chr14	88846847	88846907	ENSG00000165533.18|TTC8|pc|chr14:88846847:88846907:+	0	+
#Partially deleted in new
chr14	88877293	88881078	ENSG00000165533.18|TTC8|pc|chr14:88877293:88881078:+	0	+
#Deleted in new
chr14	89124870	89125226	ENSG00000053254.15|FOXN3|pc|chr14:89124870:89125226:-	0	-
#Deleted in new
chr14	89125327	89125440	ENSG00000053254.15|FOXN3|pc|chr14:89125327:89125440:-	0	-
#Deleted in new
chr14	89185536	89185873	ENSG00000053254.15|FOXN3|pc|chr14:89185536:89185873:-	0	-
#Deleted in new
chr14	89230727	89230867	ENSG00000053254.15|FOXN3|pc|chr14:89230727:89230867:-	0	-
#Deleted in new
chr14	89333113	89333259	ENSG00000053254.15|FOXN3|pc|chr14:89333113:89333259:-	0	-
#Partially deleted in new
chr14	89356326	89356571	ENSG00000258699.1|AL357093.1|lncRNA|chr14:89356326:89356571:+	0	+
#Deleted in new
chr14	89631366	89631566	ENSG00000258792.4|AL137230.1|lncRNA|chr14:89631366:89631566:-	0	-
#Deleted in new
chr14	89633199	89633454	ENSG00000258792.4|AL137230.1|lncRNA|chr14:89633199:89633454:-	0	-
#Partially deleted in new
chr14	89633835	89634082	ENSG00000258792.4|AL137230.1|lncRNA|chr14:89633835:89634082:-	0	-
#Deleted in new
chr14	89829830	89831216	ENSG00000140025.15|EFCAB11|pc|chr14:89829830:89831216:-	0	-
#Deleted in new
chr14	89831063	89831216	ENSG00000140025.15|EFCAB11|pc|chr14:89831063:89831216:-	0	-
#Deleted in new
chr14	89833076	89833177	ENSG00000140025.15|EFCAB11|pc|chr14:89833076:89833177:-	0	-
#Deleted in new
chr14	89836424	89836661	ENSG00000140025.15|EFCAB11|pc|chr14:89836424:89836661:-	0	-
#Deleted in new
chr14	89837019	89837145	ENSG00000140025.15|EFCAB11|pc|chr14:89837019:89837145:-	0	-
#Deleted in new
chr14	89956522	89956800	ENSG00000042088.13|TDP1|pc|chr14:89956522:89956800:+	0	+
#Deleted in new
chr14	89956564	89956800	ENSG00000042088.13|TDP1|pc|chr14:89956564:89956800:+	0	+
#Deleted in new
chr14	89956571	89956800	ENSG00000042088.13|TDP1|pc|chr14:89956571:89956800:+	0	+
#Deleted in new
chr14	89956577	89956800	ENSG00000042088.13|TDP1|pc|chr14:89956577:89956800:+	0	+
#Deleted in new
chr14	89956577	89957187	ENSG00000042088.13|TDP1|pc|chr14:89956577:89957187:+	0	+
#Deleted in new
chr14	89958292	89958397	ENSG00000042088.13|TDP1|pc|chr14:89958292:89958397:+	0	+
#Deleted in new
chr14	89964850	89964938	ENSG00000042088.13|TDP1|pc|chr14:89964850:89964938:+	0	+
#Deleted in new
chr14	89981462	89981560	ENSG00000042088.13|TDP1|pc|chr14:89981462:89981560:+	0	+
#Duplicated in new
chr14	90043069	90043252	ENSG00000042088.13|TDP1|pc|chr14:90043069:90043252:+	0	+
#Split in new
chr14	90043069	90044768	ENSG00000042088.13|TDP1|pc|chr14:90043069:90044768:+	0	+
#Partially deleted in new
chr14	90267475	90268413	ENSG00000100764.13|PSMC1|pc|chr14:90267475:90268413:+	0	+
#Partially deleted in new
chr14	90272272	90275429	ENSG00000100764.13|PSMC1|pc|chr14:90272272:90275429:+	0	+
#Partially deleted in new
chr14	90278057	90281595	ENSG00000119720.17|NRDE2|pc|chr14:90278057:90281595:-	0	-
#Deleted in new
chr14	90304506	90304654	ENSG00000119720.17|NRDE2|pc|chr14:90304506:90304654:-	0	-
#Deleted in new
chr14	90452062	90452313	ENSG00000258678.1|LINC02317|lncRNA|chr14:90452062:90452313:-	0	-
#Partially deleted in new
chr14	90454750	90454904	ENSG00000258678.1|LINC02317|lncRNA|chr14:90454750:90454904:-	0	-
#Split in new
chr14	90524563	90541589	ENSG00000165914.14|TTC7B|pc|chr14:90524563:90541589:-	0	-
#Partially deleted in new
chr14	90567494	90567718	ENSG00000258935.1|AL096869.1|lncRNA|chr14:90567494:90567718:+	0	+
#Deleted in new
chr14	90602005	90602200	ENSG00000165914.14|TTC7B|pc|chr14:90602005:90602200:-	0	-
#Deleted in new
chr14	90675117	90675227	ENSG00000258437.1|AL139193.1|lncRNA|chr14:90675117:90675227:+	0	+
#Deleted in new
chr14	90699157	90699223	ENSG00000165914.14|TTC7B|pc|chr14:90699157:90699223:-	0	-
#Deleted in new
chr14	90772649	90772942	ENSG00000165914.14|TTC7B|pc|chr14:90772649:90772942:-	0	-
#Deleted in new
chr14	90822364	90822476	ENSG00000258884.1|LINC02321|lncRNA|chr14:90822364:90822476:-	0	-
#Deleted in new
chr14	90823021	90823153	ENSG00000258884.1|LINC02321|lncRNA|chr14:90823021:90823153:-	0	-
#Deleted in new
chr14	90911299	90911469	ENSG00000100784.10|RPS6KA5|pc|chr14:90911299:90911469:-	0	-
#Deleted in new
chr14	91052322	91052462	ENSG00000100784.10|RPS6KA5|pc|chr14:91052322:91052462:-	0	-
#Deleted in new
chr14	91128777	91128912	ENSG00000133943.20|C14orf159|pc|chr14:91128777:91128912:+	0	+
#Partially deleted in new
chr14	91148573	91148852	ENSG00000133943.20|C14orf159|pc|chr14:91148573:91148852:+	0	+
#Deleted in new
chr14	91158855	91158972	ENSG00000133943.20|C14orf159|pc|chr14:91158855:91158972:+	0	+
#Deleted in new
chr14	91165246	91165337	ENSG00000133943.20|C14orf159|pc|chr14:91165246:91165337:+	0	+
#Deleted in new
chr14	91173663	91173753	ENSG00000133943.20|C14orf159|pc|chr14:91173663:91173753:+	0	+
#Partially deleted in new
chr14	91185469	91185575	ENSG00000133943.20|C14orf159|pc|chr14:91185469:91185575:+	0	+
#Deleted in new
chr14	91189786	91189807	ENSG00000133943.20|C14orf159|pc|chr14:91189786:91189807:+	0	+
#Partially deleted in new
chr14	91215856	91216460	ENSG00000133943.20|C14orf159|pc|chr14:91215856:91216460:+	0	+
#Deleted in new
chr14	91220442	91220766	ENSG00000133943.20|C14orf159|pc|chr14:91220442:91220766:+	0	+
#Deleted in new
chr14	91223678	91223795	ENSG00000133943.20|C14orf159|pc|chr14:91223678:91223795:+	0	+
#Deleted in new
chr14	91237280	91237487	ENSG00000119714.10|GPR68|pc|chr14:91237280:91237487:-	0	-
#Partially deleted in new
chr14	91418265	91418340	ENSG00000258798.1|AL133153.2|lncRNA|chr14:91418265:91418340:+	0	+
#Partially deleted in new
chr14	91572443	91575271	ENSG00000279286.2|AL133373.2|lncRNA|chr14:91572443:91575271:-	0	-
#Partially deleted in new
chr14	91573327	91575271	ENSG00000279286.2|AL133373.2|lncRNA|chr14:91573327:91575271:-	0	-
#Deleted in new
chr14	91624819	91625007	ENSG00000133962.7|CATSPERB|pc|chr14:91624819:91625007:-	0	-
#Partially deleted in new
chr14	91635523	91636579	ENSG00000133962.7|CATSPERB|pc|chr14:91635523:91636579:-	0	-
#Deleted in new
chr14	91646136	91646235	ENSG00000133962.7|CATSPERB|pc|chr14:91646136:91646235:-	0	-
#Deleted in new
chr14	91736693	91736849	ENSG00000133962.7|CATSPERB|pc|chr14:91736693:91736849:-	0	-
#Deleted in new
chr1	49174811	49175082	ENSG00000229846.1|AC092264.1|lncRNA|chr1:49174811:49175082:+	0	+
#Deleted in new
chr14	91752855	91759798	ENSG00000260711.2|AL121839.2|lncRNA|chr14:91752855:91759798:-	0	-
#Deleted in new
chr14	91778974	91779070	ENSG00000133962.7|CATSPERB|pc|chr14:91778974:91779070:-	0	-
#Duplicated in new
chr14	91780575	91780688	ENSG00000133962.7|CATSPERB|pc|chr14:91780575:91780688:-	0	-
#Duplicated in new
chr14	91780575	91780707	ENSG00000133962.7|CATSPERB|pc|chr14:91780575:91780707:-	0	-
#Deleted in new
chr14	91873496	91874816	ENSG00000140092.14|FBLN5|pc|chr14:91873496:91874816:-	0	-
#Deleted in new
chr14	91938329	91938452	ENSG00000140092.14|FBLN5|pc|chr14:91938329:91938452:-	0	-
#Deleted in new
chr14	92030540	92030776	ENSG00000100815.12|TRIP11|pc|chr14:92030540:92030776:-	0	-
#Partially deleted in new
chr14	92038651	92064414	ENSG00000066427.21|ATXN3|pc|chr14:92038651:92064414:-	0	-
#Deleted in new
chr14	92040879	92040896	ENSG00000100815.12|TRIP11|pc|chr14:92040879:92040896:-	0	-
#Deleted in new
chr14	92044774	92044958	ENSG00000066427.21|ATXN3|pc|chr14:92044774:92044958:-	0	-
#Deleted in new
chr14	92044805	92044958	ENSG00000066427.21|ATXN3|pc|chr14:92044805:92044958:-	0	-
#Deleted in new
chr14	92047895	92048089	ENSG00000066427.21|ATXN3|pc|chr14:92047895:92048089:-	0	-
#Deleted in new
chr14	92049602	92049814	ENSG00000066427.21|ATXN3|pc|chr14:92049602:92049814:-	0	-
#Deleted in new
chr14	92073531	92073536	ENSG00000066427.21|ATXN3|pc|chr14:92073531:92073536:-	0	-
#Deleted in new
chr14	92077580	92077602	ENSG00000066427.21|ATXN3|pc|chr14:92077580:92077602:-	0	-
#Deleted in new
chr14	92080540	92080567	ENSG00000066427.21|ATXN3|pc|chr14:92080540:92080567:-	0	-
#Partially deleted in new
chr14	92117497	92118726	ENSG00000183648.9|NDUFB1|pc|chr14:92117497:92118726:-	0	-
#Deleted in new
chr14	92118848	92118966	ENSG00000183648.9|NDUFB1|pc|chr14:92118848:92118966:-	0	-
#Partially deleted in new
chr14	92120330	92120416	ENSG00000183648.9|NDUFB1|pc|chr14:92120330:92120416:-	0	-
#Deleted in new
chr14	92121195	92121404	ENSG00000183648.9|NDUFB1|pc|chr14:92121195:92121404:-	0	-
#Partially deleted in new
chr14	92121211	92121693	ENSG00000183648.9|NDUFB1|pc|chr14:92121211:92121693:-	0	-
#Deleted in new
chr14	92462137	92462226	ENSG00000140090.17|SLC24A4|pc|chr14:92462137:92462226:+	0	+
#Deleted in new
chr14	92462442	92462747	ENSG00000140090.17|SLC24A4|pc|chr14:92462442:92462747:+	0	+
#Deleted in new
chr1	49257410	49257477	ENSG00000230114.1|AL590432.1|lncRNA|chr1:49257410:49257477:+	0	+
#Partially deleted in new
chr14	92684986	92688049	ENSG00000100599.15|RIN3|pc|chr14:92684986:92688049:+	0	+
#Deleted in new
chr14	92733681	92733810	ENSG00000100600.14|LGMN|pc|chr14:92733681:92733810:-	0	-
#Deleted in new
chr14	92741061	92741179	ENSG00000100600.14|LGMN|pc|chr14:92741061:92741179:-	0	-
#Deleted in new
chr14	92741704	92741859	ENSG00000100600.14|LGMN|pc|chr14:92741704:92741859:-	0	-
#Deleted in new
chr14	92741717	92741859	ENSG00000100600.14|LGMN|pc|chr14:92741717:92741859:-	0	-
#Deleted in new
chr14	92742908	92743021	ENSG00000100600.14|LGMN|pc|chr14:92742908:92743021:-	0	-
#Partially deleted in new
chr14	92891423	92891701	ENSG00000258742.5|AL117192.1|lncRNA|chr14:92891423:92891701:+	0	+
#Deleted in new
chr14	92891608	92891701	ENSG00000258742.5|AL117192.1|lncRNA|chr14:92891608:92891701:+	0	+
#Deleted in new
chr14	92891616	92891701	ENSG00000258742.5|AL117192.1|lncRNA|chr14:92891616:92891701:+	0	+
#Deleted in new
chr14	92891794	92891887	ENSG00000258742.5|AL117192.1|lncRNA|chr14:92891794:92891887:+	0	+
#Deleted in new
chr14	92891794	92893506	ENSG00000258742.5|AL117192.1|lncRNA|chr14:92891794:92893506:+	0	+
#Deleted in new
chr14	92892755	92893026	ENSG00000258742.5|AL117192.1|lncRNA|chr14:92892755:92893026:+	0	+
#Deleted in new
chr14	92892780	92893026	ENSG00000258742.5|AL117192.1|lncRNA|chr14:92892780:92893026:+	0	+
#Partially deleted in new
chr14	92936913	92938526	ENSG00000100605.16|ITPK1|pc|chr14:92936913:92938526:-	0	-
#Deleted in new
chr14	92998902	92998939	ENSG00000100605.16|ITPK1|pc|chr14:92998902:92998939:-	0	-
#Deleted in new
chr14	93066184	93066358	ENSG00000100605.16|ITPK1|pc|chr14:93066184:93066358:-	0	-
#Deleted in new
chr14	93188892	93188997	ENSG00000259066.5|AL110118.2|pc|chr14:93188892:93188997:+	0	+
#Partially deleted in new
chr14	93287627	93288707	ENSG00000011114.14|BTBD7|pc|chr14:93287627:93288707:-	0	-
#Partially deleted in new
chr14	93287671	93288730	ENSG00000011114.14|BTBD7|pc|chr14:93287671:93288730:-	0	-
#Partially deleted in new
chr14	93334527	93335057	ENSG00000278396.1|AL122023.1|lncRNA|chr14:93334527:93335057:+	0	+
#Deleted in new
chr1	49374200	49374344	ENSG00000225623.1|AGBL4-IT1|lncRNA|chr1:49374200:49374344:-	0	-
#Deleted in new
chr14	93904729	93905388	ENSG00000258584.1|FAM181A-AS1|lncRNA|chr14:93904729:93905388:-	0	-
#Deleted in new
chr14	93908918	93909170	ENSG00000258584.1|FAM181A-AS1|lncRNA|chr14:93908918:93909170:-	0	-
#Deleted in new
chr14	93910569	93910609	ENSG00000258584.1|FAM181A-AS1|lncRNA|chr14:93910569:93910609:-	0	-
#Deleted in new
chr14	93911513	93911619	ENSG00000258584.1|FAM181A-AS1|lncRNA|chr14:93911513:93911619:-	0	-
#Deleted in new
chr14	93917238	93917396	ENSG00000258584.1|FAM181A-AS1|lncRNA|chr14:93917238:93917396:-	0	-
#Deleted in new
chr14	93922060	93922165	ENSG00000258584.1|FAM181A-AS1|lncRNA|chr14:93922060:93922165:-	0	-
#Deleted in new
chr14	93922275	93922381	ENSG00000258584.1|FAM181A-AS1|lncRNA|chr14:93922275:93922381:-	0	-
#Deleted in new
chr14	93925047	93925370	ENSG00000140067.6|FAM181A|pc|chr14:93925047:93925370:+	0	+
#Deleted in new
chr14	93925111	93925276	ENSG00000258584.1|FAM181A-AS1|lncRNA|chr14:93925111:93925276:-	0	-
#Deleted in new
chr14	93925111	93925338	ENSG00000258584.1|FAM181A-AS1|lncRNA|chr14:93925111:93925338:-	0	-
#Deleted in new
chr14	93925232	93925338	ENSG00000258584.1|FAM181A-AS1|lncRNA|chr14:93925232:93925338:-	0	-
#Deleted in new
chr14	93942199	93942259	ENSG00000258987.1|AL132642.1|lncRNA|chr14:93942199:93942259:+	0	+
#Deleted in new
chr14	93968254	93968293	ENSG00000100628.11|ASB2|pc|chr14:93968254:93968293:-	0	-
#Deleted in new
chr14	93969919	93969970	ENSG00000100628.11|ASB2|pc|chr14:93969919:93969970:-	0	-
#Deleted in new
chr14	93973947	93974083	ENSG00000100628.11|ASB2|pc|chr14:93973947:93974083:-	0	-
#Deleted in new
chr14	93997204	93997293	ENSG00000175699.14|CCDC197|pc|chr14:93997204:93997293:+	0	+
#Deleted in new
chr14	93997269	93997293	ENSG00000175699.14|CCDC197|pc|chr14:93997269:93997293:+	0	+
#Deleted in new
chr14	93997273	93997293	ENSG00000175699.14|CCDC197|pc|chr14:93997273:93997293:+	0	+
#Deleted in new
chr14	93997295	93997571	ENSG00000175699.14|CCDC197|pc|chr14:93997295:93997571:+	0	+
#Deleted in new
chr14	93997339	93997571	ENSG00000175699.14|CCDC197|pc|chr14:93997339:93997571:+	0	+
#Deleted in new
chr14	93999336	93999460	ENSG00000175699.14|CCDC197|pc|chr14:93999336:93999460:+	0	+
#Deleted in new
chr14	93999582	93999665	ENSG00000175699.14|CCDC197|pc|chr14:93999582:93999665:+	0	+
#Partially deleted in new
chr14	94007010	94007546	ENSG00000175699.14|CCDC197|pc|chr14:94007010:94007546:+	0	+
#Partially deleted in new
chr14	94007010	94007552	ENSG00000175699.14|CCDC197|pc|chr14:94007010:94007552:+	0	+
#Partially deleted in new
chr14	94054995	94057897	ENSG00000089737.16|DDX24|pc|chr14:94054995:94057897:-	0	-
#Partially deleted in new
chr14	94081300	94081449	ENSG00000165948.10|IFI27L1|pc|chr14:94081300:94081449:+	0	+
#Partially deleted in new
chr14	94081310	94081449	ENSG00000165948.10|IFI27L1|pc|chr14:94081310:94081449:+	0	+
#Partially deleted in new
chr14	94081328	94081449	ENSG00000165948.10|IFI27L1|pc|chr14:94081328:94081449:+	0	+
#Deleted in new
chr14	94081355	94081449	ENSG00000165948.10|IFI27L1|pc|chr14:94081355:94081449:+	0	+
#Deleted in new
chr14	94081364	94081449	ENSG00000165948.10|IFI27L1|pc|chr14:94081364:94081449:+	0	+
#Deleted in new
chr14	94081374	94081449	ENSG00000165948.10|IFI27L1|pc|chr14:94081374:94081449:+	0	+
#Deleted in new
chr14	94081381	94081449	ENSG00000165948.10|IFI27L1|pc|chr14:94081381:94081449:+	0	+
#Deleted in new
chr14	94081386	94081449	ENSG00000165948.10|IFI27L1|pc|chr14:94081386:94081449:+	0	+
#Deleted in new
chr14	94081395	94081449	ENSG00000165948.10|IFI27L1|pc|chr14:94081395:94081449:+	0	+
#Deleted in new
chr14	94088247	94088303	ENSG00000165948.10|IFI27L1|pc|chr14:94088247:94088303:+	0	+
#Deleted in new
chr14	94089043	94089299	ENSG00000165948.10|IFI27L1|pc|chr14:94089043:94089299:+	0	+
#Deleted in new
chr14	94094749	94094899	ENSG00000165948.10|IFI27L1|pc|chr14:94094749:94094899:+	0	+
#Deleted in new
chr14	94097491	94097678	ENSG00000165948.10|IFI27L1|pc|chr14:94097491:94097678:+	0	+
#Deleted in new
chr14	94097494	94097678	ENSG00000165948.10|IFI27L1|pc|chr14:94097494:94097678:+	0	+
#Partially deleted in new
chr14	94100738	94101348	ENSG00000165948.10|IFI27L1|pc|chr14:94100738:94101348:+	0	+
#Partially deleted in new
chr14	94102476	94102708	ENSG00000165948.10|IFI27L1|pc|chr14:94102476:94102708:+	0	+
#Partially deleted in new
chr14	94102476	94102709	ENSG00000165948.10|IFI27L1|pc|chr14:94102476:94102709:+	0	+
#Partially deleted in new
chr14	94102476	94102714	ENSG00000165948.10|IFI27L1|pc|chr14:94102476:94102714:+	0	+
#Deleted in new
chr14	94103502	94103846	ENSG00000165948.10|IFI27L1|pc|chr14:94103502:94103846:+	0	+
#Deleted in new
chr14	94104835	94105034	ENSG00000165949.12|IFI27|pc|chr14:94104835:94105034:+	0	+
#Deleted in new
chr14	94105764	94105918	ENSG00000165949.12|IFI27|pc|chr14:94105764:94105918:+	0	+
#Deleted in new
chr14	94110677	94110797	ENSG00000165949.12|IFI27|pc|chr14:94110677:94110797:+	0	+
#Deleted in new
chr14	94110732	94110797	ENSG00000165949.12|IFI27|pc|chr14:94110732:94110797:+	0	+
#Deleted in new
chr14	94110733	94110797	ENSG00000165949.12|IFI27|pc|chr14:94110733:94110797:+	0	+
#Deleted in new
chr14	94110735	94110797	ENSG00000165949.12|IFI27|pc|chr14:94110735:94110797:+	0	+
#Deleted in new
chr14	94110738	94110761	ENSG00000165949.12|IFI27|pc|chr14:94110738:94110761:+	0	+
#Deleted in new
chr14	94110746	94110797	ENSG00000165949.12|IFI27|pc|chr14:94110746:94110797:+	0	+
#Deleted in new
chr14	94110748	94110797	ENSG00000165949.12|IFI27|pc|chr14:94110748:94110797:+	0	+
#Deleted in new
chr14	94110754	94110797	ENSG00000165949.12|IFI27|pc|chr14:94110754:94110797:+	0	+
#Deleted in new
chr14	94110761	94110797	ENSG00000165949.12|IFI27|pc|chr14:94110761:94110797:+	0	+
#Deleted in new
chr14	94110814	94110978	ENSG00000165949.12|IFI27|pc|chr14:94110814:94110978:+	0	+
#Deleted in new
chr14	94110925	94110978	ENSG00000165949.12|IFI27|pc|chr14:94110925:94110978:+	0	+
#Deleted in new
chr14	94111624	94111773	ENSG00000165949.12|IFI27|pc|chr14:94111624:94111773:+	0	+
#Deleted in new
chr14	94111624	94112133	ENSG00000165949.12|IFI27|pc|chr14:94111624:94112133:+	0	+
#Deleted in new
chr14	94111658	94111773	ENSG00000165949.12|IFI27|pc|chr14:94111658:94111773:+	0	+
#Deleted in new
chr14	94111658	94112194	ENSG00000165949.12|IFI27|pc|chr14:94111658:94112194:+	0	+
#Deleted in new
chr14	94112850	94114880	ENSG00000165949.12|IFI27|pc|chr14:94112850:94114880:+	0	+
#Deleted in new
chr14	94114850	94114880	ENSG00000165949.12|IFI27|pc|chr14:94114850:94114880:+	0	+
#Deleted in new
chr14	94129261	94129291	ENSG00000119632.3|IFI27L2|pc|chr14:94129261:94129291:-	0	-
#Deleted in new
chr14	94129261	94129401	ENSG00000119632.3|IFI27L2|pc|chr14:94129261:94129401:-	0	-
#Deleted in new
chr14	94129261	94129589	ENSG00000119632.3|IFI27L2|pc|chr14:94129261:94129589:-	0	-
#Deleted in new
chr14	94129557	94129580	ENSG00000119632.3|IFI27L2|pc|chr14:94129557:94129580:-	0	-
#Deleted in new
chr14	94129557	94129664	ENSG00000119632.3|IFI27L2|pc|chr14:94129557:94129664:-	0	-
#Deleted in new
chr14	94130093	94130253	ENSG00000119632.3|IFI27L2|pc|chr14:94130093:94130253:-	0	-
#Deleted in new
chr14	94430632	94430676	ENSG00000256357.1|AL132708.1|lncRNA|chr14:94430632:94430676:+	0	+
#Deleted in new
chr14	94431614	94431741	ENSG00000256357.1|AL132708.1|lncRNA|chr14:94431614:94431741:+	0	+
#Deleted in new
chr14	94470087	94470185	ENSG00000170054.14|SERPINA9|pc|chr14:94470087:94470185:-	0	-
#Deleted in new
chr14	94515819	94516154	ENSG00000165953.9|SERPINA12|pc|chr14:94515819:94516154:-	0	-
#Deleted in new
chr14	94517400	94517844	ENSG00000165953.9|SERPINA12|pc|chr14:94517400:94517844:-	0	-
#Deleted in new
chr14	94578705	94578831	ENSG00000188488.13|SERPINA5|pc|chr14:94578705:94578831:+	0	+
#Deleted in new
chr14	94581614	94581638	ENSG00000188488.13|SERPINA5|pc|chr14:94581614:94581638:+	0	+
#Deleted in new
chr14	94581614	94581710	ENSG00000188488.13|SERPINA5|pc|chr14:94581614:94581710:+	0	+
#Deleted in new
chr14	94581879	94581998	ENSG00000188488.13|SERPINA5|pc|chr14:94581879:94581998:+	0	+
#Deleted in new
chr14	94581970	94582342	ENSG00000188488.13|SERPINA5|pc|chr14:94581970:94582342:+	0	+
#Deleted in new
chr14	94586845	94586983	ENSG00000188488.13|SERPINA5|pc|chr14:94586845:94586983:+	0	+
#Deleted in new
chr14	94596254	94596857	ENSG00000273259.3|AL049839.2|pc|chr14:94596254:94596857:+	0	+
#Deleted in new
chr14	94598089	94598211	ENSG00000273259.3|AL049839.2|pc|chr14:94598089:94598211:+	0	+
#Split in new
chr14	94617641	94619468	ENSG00000196136.17|SERPINA3|pc|chr14:94617641:94619468:+	0	+
#Deleted in new
chr1	49471995	49472085	ENSG00000225623.1|AGBL4-IT1|lncRNA|chr1:49471995:49472085:-	0	-
#Deleted in new
chr14	94960276	94960488	ENSG00000258933.1|LINC02279|lncRNA|chr14:94960276:94960488:-	0	-
#Partially deleted in new
chr14	94962508	94962780	ENSG00000258933.1|LINC02279|lncRNA|chr14:94962508:94962780:-	0	-
#Deleted in new
chr14	95048219	95048260	ENSG00000258866.1|AL390254.1|lncRNA|chr14:95048219:95048260:+	0	+
#Deleted in new
chr14	95050529	95050953	ENSG00000258866.1|AL390254.1|lncRNA|chr14:95050529:95050953:+	0	+
#Partially deleted in new
chr14	95157644	95159035	ENSG00000235706.7|DICER1-AS1|lncRNA|chr14:95157644:95159035:+	0	+
#Deleted in new
chr14	95157930	95158010	ENSG00000100697.14|DICER1|pc|chr14:95157930:95158010:-	0	-
#Deleted in new
chr14	95158192	95158234	ENSG00000235706.7|DICER1-AS1|lncRNA|chr14:95158192:95158234:+	0	+
#Deleted in new
chr14	95158875	95159035	ENSG00000235706.7|DICER1-AS1|lncRNA|chr14:95158875:95159035:+	0	+
#Deleted in new
chr14	95177482	95179378	ENSG00000235706.7|DICER1-AS1|lncRNA|chr14:95177482:95179378:+	0	+
#Deleted in new
chr14	95179498	95179633	ENSG00000235706.7|DICER1-AS1|lncRNA|chr14:95179498:95179633:+	0	+
#Deleted in new
chr14	95179498	95179925	ENSG00000235706.7|DICER1-AS1|lncRNA|chr14:95179498:95179925:+	0	+
#Deleted in new
chr14	95179503	95179925	ENSG00000235706.7|DICER1-AS1|lncRNA|chr14:95179503:95179925:+	0	+
#Deleted in new
chr14	95179750	95179933	ENSG00000235706.7|DICER1-AS1|lncRNA|chr14:95179750:95179933:+	0	+
#Deleted in new
chr14	95185116	95185340	ENSG00000259143.1|AL356017.1|lncRNA|chr14:95185116:95185340:-	0	-
#Deleted in new
chr1	49527227	49527604	ENSG00000186094.16|AGBL4|pc|chr1:49527227:49527604:-	0	-
#Deleted in new
chr14	95296133	95296243	ENSG00000165959.11|CLMN|pc|chr14:95296133:95296243:-	0	-
#Deleted in new
chr14	95329583	95329668	ENSG00000258630.1|LINC02292|lncRNA|chr14:95329583:95329668:+	0	+
#Partially deleted in new
chr14	95532296	95533061	ENSG00000247092.6|SNHG10|lncRNA|chr14:95532296:95533061:-	0	-
#Deleted in new
chr14	95573561	95573684	ENSG00000258390.1|LINC02318|lncRNA|chr14:95573561:95573684:+	0	+
#Deleted in new
chr14	95573604	95573682	ENSG00000258390.1|LINC02318|lncRNA|chr14:95573604:95573682:+	0	+
#Deleted in new
chr14	95577428	95578684	ENSG00000258390.1|LINC02318|lncRNA|chr14:95577428:95578684:+	0	+
#Deleted in new
chr14	95580767	95580821	ENSG00000258390.1|LINC02318|lncRNA|chr14:95580767:95580821:+	0	+
#Partially deleted in new
chr14	95581418	95581956	ENSG00000258390.1|LINC02318|lncRNA|chr14:95581418:95581956:+	0	+
#Deleted in new
chr14	95620913	95621033	ENSG00000258927.1|AL133467.2|lncRNA|chr14:95620913:95621033:+	0	+
#Partially deleted in new
chr14	95642017	95643285	ENSG00000258927.1|AL133467.2|lncRNA|chr14:95642017:95643285:+	0	+
#Deleted in new
chr14	95644507	95645232	ENSG00000270038.1|AL133467.4|lncRNA|chr14:95644507:95645232:+	0	+
#Deleted in new
chr14	95650497	95651029	ENSG00000187621.14|TCL6|lncRNA|chr14:95650497:95651029:+	0	+
#Deleted in new
chr14	95650500	95651029	ENSG00000187621.14|TCL6|lncRNA|chr14:95650500:95651029:+	0	+
#Deleted in new
chr14	95651177	95652226	ENSG00000187621.14|TCL6|lncRNA|chr14:95651177:95652226:+	0	+
#Deleted in new
chr14	95652044	95652226	ENSG00000187621.14|TCL6|lncRNA|chr14:95652044:95652226:+	0	+
#Deleted in new
chr14	95652096	95652226	ENSG00000187621.14|TCL6|lncRNA|chr14:95652096:95652226:+	0	+
#Deleted in new
chr14	95652376	95652489	ENSG00000187621.14|TCL6|lncRNA|chr14:95652376:95652489:+	0	+
#Deleted in new
chr14	95654508	95654626	ENSG00000187621.14|TCL6|lncRNA|chr14:95654508:95654626:+	0	+
#Deleted in new
chr14	95654508	95654647	ENSG00000187621.14|TCL6|lncRNA|chr14:95654508:95654647:+	0	+
#Deleted in new
chr14	95662479	95662664	ENSG00000187621.14|TCL6|lncRNA|chr14:95662479:95662664:+	0	+
#Deleted in new
chr14	95663255	95663635	ENSG00000187621.14|TCL6|lncRNA|chr14:95663255:95663635:+	0	+
#Deleted in new
chr14	95664861	95665076	ENSG00000187621.14|TCL6|lncRNA|chr14:95664861:95665076:+	0	+
#Deleted in new
chr14	95668125	95668580	ENSG00000187621.14|TCL6|lncRNA|chr14:95668125:95668580:+	0	+
#Deleted in new
chr14	95668125	95668580	ENSG00000259084.6|AL133467.3|lncRNA|chr14:95668125:95668580:+	0	+
#Partially deleted in new
chr14	95668125	95669617	ENSG00000187621.14|TCL6|lncRNA|chr14:95668125:95669617:+	0	+
#Deleted in new
chr14	95671330	95671487	ENSG00000187621.14|TCL6|lncRNA|chr14:95671330:95671487:+	0	+
#Deleted in new
chr14	95671330	95671487	ENSG00000259084.6|AL133467.3|lncRNA|chr14:95671330:95671487:+	0	+
#Partially deleted in new
chr14	95671334	95671560	ENSG00000187621.14|TCL6|lncRNA|chr14:95671334:95671560:+	0	+
#Deleted in new
chr14	95671676	95671850	ENSG00000187621.14|TCL6|lncRNA|chr14:95671676:95671850:+	0	+
#Partially deleted in new
chr14	95671970	95673452	ENSG00000187621.14|TCL6|lncRNA|chr14:95671970:95673452:+	0	+
#Deleted in new
chr14	95676449	95678100	ENSG00000187621.14|TCL6|lncRNA|chr14:95676449:95678100:+	0	+
#Deleted in new
chr14	95676640	95677136	ENSG00000187621.14|TCL6|lncRNA|chr14:95676640:95677136:+	0	+
#Deleted in new
chr14	95679071	95679833	ENSG00000187621.14|TCL6|lncRNA|chr14:95679071:95679833:+	0	+
#Deleted in new
chr14	95686416	95686629	ENSG00000213231.12|TCL1B|pc|chr14:95686416:95686629:+	0	+
#Deleted in new
chr14	95686437	95686629	ENSG00000213231.12|TCL1B|pc|chr14:95686437:95686629:+	0	+
#Deleted in new
chr14	95688178	95688274	ENSG00000259084.6|AL133467.3|lncRNA|chr14:95688178:95688274:+	0	+
#Deleted in new
chr14	95689284	95689406	ENSG00000213231.12|TCL1B|pc|chr14:95689284:95689406:+	0	+
#Partially deleted in new
chr14	95712550	95712774	ENSG00000100721.10|TCL1A|pc|chr14:95712550:95712774:-	0	-
#Deleted in new
chr14	95712679	95712722	ENSG00000100721.10|TCL1A|pc|chr14:95712679:95712722:-	0	-
#Deleted in new
chr14	95855547	95855977	ENSG00000258516.1|AL133167.1|lncRNA|chr14:95855547:95855977:-	0	-
#Deleted in new
chr14	95855747	95855977	ENSG00000258516.1|AL133167.1|lncRNA|chr14:95855747:95855977:-	0	-
#Deleted in new
chr14	96051123	96051222	ENSG00000227051.6|C14orf132|pc|chr14:96051123:96051222:+	0	+
#Deleted in new
chr14	96210859	96211139	ENSG00000258412.1|AL355102.1|lncRNA|chr14:96210859:96211139:+	0	+
#Deleted in new
chr14	96233430	96233858	ENSG00000259036.1|AL355102.5|lncRNA|chr14:96233430:96233858:-	0	-
#Partially deleted in new
chr14	96233957	96234101	ENSG00000259036.1|AL355102.5|lncRNA|chr14:96233957:96234101:-	0	-
#Deleted in new
chr14	96259410	96259892	ENSG00000258793.1|AL355102.4|lncRNA|chr14:96259410:96259892:-	0	-
#Deleted in new
chr14	96262651	96262770	ENSG00000100739.10|BDKRB1|pc|chr14:96262651:96262770:+	0	+
#Deleted in new
chr14	96262651	96262770	ENSG00000258691.1|AL355102.2|pc|chr14:96262651:96262770:+	0	+
#Deleted in new
chr14	96268368	96268624	ENSG00000258793.1|AL355102.4|lncRNA|chr14:96268368:96268624:-	0	-
#Deleted in new
chr14	96268429	96268455	ENSG00000100739.10|BDKRB1|pc|chr14:96268429:96268455:+	0	+
#Deleted in new
chr14	96268429	96268967	ENSG00000100739.10|BDKRB1|pc|chr14:96268429:96268967:+	0	+
#Partially deleted in new
chr14	96275045	96276723	ENSG00000258729.2|AL355102.3|lncRNA|chr14:96275045:96276723:-	0	-
#Partially deleted in new
chr14	96275046	96276723	ENSG00000258729.2|AL355102.3|lncRNA|chr14:96275046:96276723:-	0	-
#Deleted in new
chr14	96318233	96318298	ENSG00000066739.11|ATG2B|pc|chr14:96318233:96318298:-	0	-
#Deleted in new
chr14	96379687	96379755	ENSG00000100744.14|GSKIP|pc|chr14:96379687:96379755:+	0	+
#Deleted in new
chr14	96379687	96379788	ENSG00000100744.14|GSKIP|pc|chr14:96379687:96379788:+	0	+
#Deleted in new
chr14	96379687	96380292	ENSG00000100744.14|GSKIP|pc|chr14:96379687:96380292:+	0	+
#Deleted in new
chr14	96379701	96379734	ENSG00000100744.14|GSKIP|pc|chr14:96379701:96379734:+	0	+
#Deleted in new
chr1	4964417	4964553	ENSG00000284739.1|BX005132.2|lncRNA|chr1:4964417:4964553:-	0	-
#Deleted in new
chr14	96487957	96488275	ENSG00000140057.8|AK7|pc|chr14:96487957:96488275:+	0	+
#Partially deleted in new
chr14	96488304	96489427	ENSG00000140057.8|AK7|pc|chr14:96488304:96489427:+	0	+
#Partially deleted in new
chr14	96500809	96502321	ENSG00000260806.1|AL163051.1|lncRNA|chr14:96500809:96502321:-	0	-
#Deleted in new
chr14	96501432	96501589	ENSG00000090060.17|PAPOLA|pc|chr14:96501432:96501589:+	0	+
#Deleted in new
chr14	96502850	96502954	ENSG00000090060.17|PAPOLA|pc|chr14:96502850:96502954:+	0	+
#Deleted in new
chr14	96504288	96504699	ENSG00000090060.17|PAPOLA|pc|chr14:96504288:96504699:+	0	+
#Deleted in new
chr14	96592732	96595762	ENSG00000258702.1|AL137786.1|lncRNA|chr14:96592732:96595762:+	0	+
#Deleted in new
chr14	96592767	96593249	ENSG00000258702.1|AL137786.1|lncRNA|chr14:96592767:96593249:+	0	+
#Deleted in new
chr14	96593489	96593699	ENSG00000258702.1|AL137786.1|lncRNA|chr14:96593489:96593699:+	0	+
#Deleted in new
chr14	96594663	96594760	ENSG00000258702.1|AL137786.1|lncRNA|chr14:96594663:96594760:+	0	+
#Deleted in new
chr14	96753268	96753326	ENSG00000258979.1|LINC02299|lncRNA|chr14:96753268:96753326:+	0	+
#Deleted in new
chr14	96858908	96859027	ENSG00000100749.7|VRK1|pc|chr14:96858908:96859027:+	0	+
#Deleted in new
chr14	96931330	96931722	ENSG00000100749.7|VRK1|pc|chr14:96931330:96931722:+	0	+
#Deleted in new
chr14	96931366	96931556	ENSG00000225163.4|LINC00618|lncRNA|chr14:96931366:96931556:+	0	+
#Deleted in new
chr14	96943516	96943680	ENSG00000225163.4|LINC00618|lncRNA|chr14:96943516:96943680:+	0	+
#Deleted in new
chr14	96943638	96943680	ENSG00000225163.4|LINC00618|lncRNA|chr14:96943638:96943680:+	0	+
#Partially deleted in new
chr14	96992863	96996601	ENSG00000280070.1|AL049833.3|lncRNA|chr14:96992863:96996601:+	0	+
#Deleted in new
chr14	97110415	97110862	ENSG00000259026.1|AL049833.2|lncRNA|chr14:97110415:97110862:-	0	-
#Deleted in new
chr14	97116354	97116591	ENSG00000258393.1|AL049833.1|lncRNA|chr14:97116354:97116591:+	0	+
#Deleted in new
chr14	97117741	97117886	ENSG00000259026.1|AL049833.2|lncRNA|chr14:97117741:97117886:-	0	-
#Deleted in new
chr14	97117784	97118233	ENSG00000259026.1|AL049833.2|lncRNA|chr14:97117784:97118233:-	0	-
#Deleted in new
chr14	97118373	97118541	ENSG00000258393.1|AL049833.1|lncRNA|chr14:97118373:97118541:+	0	+
#Deleted in new
chr14	97154856	97155169	ENSG00000259110.1|LINC02304|lncRNA|chr14:97154856:97155169:+	0	+
#Deleted in new
chr14	97158604	97158736	ENSG00000259110.1|LINC02304|lncRNA|chr14:97158604:97158736:+	0	+
#Deleted in new
chr1	4973106	4973298	ENSG00000284739.1|BX005132.2|lncRNA|chr1:4973106:4973298:-	0	-
#Deleted in new
chr1	4973380	4973547	ENSG00000284674.1|BX005132.1|lncRNA|chr1:4973380:4973547:+	0	+
#Deleted in new
chr14	97461803	97462332	ENSG00000246084.2|LINC02325|lncRNA|chr14:97461803:97462332:+	0	+
#Deleted in new
chr14	97462086	97462332	ENSG00000246084.2|LINC02325|lncRNA|chr14:97462086:97462332:+	0	+
#Deleted in new
chr14	97463631	97464159	ENSG00000246084.2|LINC02325|lncRNA|chr14:97463631:97464159:+	0	+
#Deleted in new
chr14	97466495	97466618	ENSG00000246084.2|LINC02325|lncRNA|chr14:97466495:97466618:+	0	+
#Deleted in new
chr14	97469284	97469385	ENSG00000246084.2|LINC02325|lncRNA|chr14:97469284:97469385:+	0	+
#Deleted in new
chr14	97510254	97510365	ENSG00000246084.2|LINC02325|lncRNA|chr14:97510254:97510365:+	0	+
#Deleted in new
chr14	97637482	97637635	ENSG00000197176.7|LINC02291|lncRNA|chr14:97637482:97637635:-	0	-
#Deleted in new
chr14	97686358	97686627	ENSG00000197176.7|LINC02291|lncRNA|chr14:97686358:97686627:-	0	-
#Deleted in new
chr14	97686358	97686658	ENSG00000197176.7|LINC02291|lncRNA|chr14:97686358:97686658:-	0	-
#Partially deleted in new
chr14	97749263	97751975	ENSG00000258869.1|LINC02312|lncRNA|chr14:97749263:97751975:-	0	-
#Deleted in new
chr14	97751563	97751975	ENSG00000258869.1|LINC02312|lncRNA|chr14:97751563:97751975:-	0	-
#Deleted in new
chr14	97763931	97763989	ENSG00000258869.1|LINC02312|lncRNA|chr14:97763931:97763989:-	0	-
#Deleted in new
chr14	97786564	97786848	ENSG00000258379.1|AL355097.1|lncRNA|chr14:97786564:97786848:-	0	-
#Deleted in new
chr14	97789001	97789256	ENSG00000258379.1|AL355097.1|lncRNA|chr14:97789001:97789256:-	0	-
#Deleted in new
chr14	97925609	97926644	ENSG00000246223.8|LINC01550|lncRNA|chr14:97925609:97926644:-	0	-
#Deleted in new
chr14	97959910	97960417	ENSG00000246223.8|LINC01550|lncRNA|chr14:97959910:97960417:-	0	-
#Deleted in new
chr14	97960262	97960417	ENSG00000246223.8|LINC01550|lncRNA|chr14:97960262:97960417:-	0	-
#Deleted in new
chr14	97968841	97969015	ENSG00000246223.8|LINC01550|lncRNA|chr14:97968841:97969015:-	0	-
#Partially deleted in new
chr1	4980480	4981568	ENSG00000284674.1|BX005132.1|lncRNA|chr1:4980480:4981568:+	0	+
#Deleted in new
chr14	98068239	98068511	ENSG00000259097.1|AL163932.1|lncRNA|chr14:98068239:98068511:-	0	-
#Deleted in new
chr14	98080376	98080525	ENSG00000259097.1|AL163932.1|lncRNA|chr14:98080376:98080525:-	0	-
#Deleted in new
chr14	98205022	98205143	ENSG00000259097.1|AL163932.1|lncRNA|chr14:98205022:98205143:-	0	-
#Deleted in new
chr14	98497131	98497238	ENSG00000258795.1|AL132719.1|lncRNA|chr14:98497131:98497238:+	0	+
#Deleted in new
chr14	98514562	98514798	ENSG00000258795.1|AL132719.1|lncRNA|chr14:98514562:98514798:+	0	+
#Deleted in new
chr14	99324798	99324918	ENSG00000258383.1|AL132819.1|lncRNA|chr14:99324798:99324918:-	0	-
#Deleted in new
chr14	99331927	99332015	ENSG00000258383.1|AL132819.1|lncRNA|chr14:99331927:99332015:-	0	-
#Deleted in new
chr14	99409803	99410215	ENSG00000183576.12|SETD3|pc|chr14:99409803:99410215:-	0	-
#Deleted in new
chr14	99409804	99410215	ENSG00000183576.12|SETD3|pc|chr14:99409804:99410215:-	0	-
#Partially deleted in new
chr14	99522377	99522563	ENSG00000205476.8|CCDC85C|pc|chr14:99522377:99522563:-	0	-
#Partially deleted in new
chr14	99534663	99535044	ENSG00000090061.17|CCNK|pc|chr14:99534663:99535044:+	0	+
#Partially deleted in new
chr14	99675090	99680569	ENSG00000182218.9|HHIPL1|pc|chr14:99675090:99680569:+	0	+
#Deleted in new
chr14	99693156	99693216	ENSG00000258672.1|AL160313.2|lncRNA|chr14:99693156:99693216:-	0	-
#Deleted in new
chr14	99693618	99693648	ENSG00000258672.1|AL160313.2|lncRNA|chr14:99693618:99693648:-	0	-
#Deleted in new
chr14	99695431	99695474	ENSG00000036530.8|CYP46A1|pc|chr14:99695431:99695474:+	0	+
#Partially deleted in new
chr14	99707567	99713437	ENSG00000036530.8|CYP46A1|pc|chr14:99707567:99713437:+	0	+
#Deleted in new
chr14	99722885	99723132	ENSG00000036530.8|CYP46A1|pc|chr14:99722885:99723132:+	0	+
#Deleted in new
chr14	99809450	99809684	ENSG00000066629.16|EML1|pc|chr14:99809450:99809684:+	0	+
#Deleted in new
chr14	99839041	99839071	ENSG00000066629.16|EML1|pc|chr14:99839041:99839071:+	0	+
#Deleted in new
chr14	99850123	99850332	ENSG00000066629.16|EML1|pc|chr14:99850123:99850332:+	0	+
#Deleted in new
chr14	99883240	99883546	ENSG00000066629.16|EML1|pc|chr14:99883240:99883546:+	0	+
#Deleted in new
chr14	99885872	99886105	ENSG00000066629.16|EML1|pc|chr14:99885872:99886105:+	0	+
#Deleted in new
chr14	99899411	99899478	ENSG00000066629.16|EML1|pc|chr14:99899411:99899478:+	0	+
#Partially deleted in new
chr14	99914565	99915412	ENSG00000066629.16|EML1|pc|chr14:99914565:99915412:+	0	+
#Partially deleted in new
chr1	49994317	49996218	ENSG00000279324.1|AL645730.1|lncRNA|chr1:49994317:49996218:+	0	+
#Deleted in new
chr14	99978037	99978098	ENSG00000258693.1|AL133368.2|lncRNA|chr14:99978037:99978098:-	0	-
#Partially deleted in new
chr1	50250127	50250242	ENSG00000284696.1|AL596275.2|lncRNA|chr1:50250127:50250242:-	0	-
#Deleted in new
chr1	50255747	50255811	ENSG00000284645.1|AL592182.3|lncRNA|chr1:50255747:50255811:+	0	+
#Deleted in new
chr1	50292926	50293024	ENSG00000284696.1|AL596275.2|lncRNA|chr1:50292926:50293024:-	0	-
#Deleted in new
chr1	50461468	50461496	ENSG00000225767.1|AL049637.1|lncRNA|chr1:50461468:50461496:+	0	+
#Deleted in new
chr1	50462191	50462313	ENSG00000225767.1|AL049637.1|lncRNA|chr1:50462191:50462313:+	0	+
#Deleted in new
chr1	50469437	50469544	ENSG00000225767.1|AL049637.1|lncRNA|chr1:50469437:50469544:+	0	+
#Deleted in new
chr1	50470733	50470889	ENSG00000225767.1|AL049637.1|lncRNA|chr1:50470733:50470889:+	0	+
#Deleted in new
chr1	50471060	50471150	ENSG00000225767.1|AL049637.1|lncRNA|chr1:50471060:50471150:+	0	+
#Deleted in new
chr1	5086458	5086569	ENSG00000231510.1|AL691497.1|lncRNA|chr1:5086458:5086569:-	0	-
#Deleted in new
chr1	5088250	5088373	ENSG00000231510.1|AL691497.1|lncRNA|chr1:5088250:5088373:-	0	-
#Deleted in new
chr15	100168387	100168706	ENSG00000140470.13|ADAMTS17|pc|chr15:100168387:100168706:-	0	-
#Deleted in new
chr15	100305887	100306577	ENSG00000140470.13|ADAMTS17|pc|chr15:100305887:100306577:-	0	-
#Deleted in new
chr15	100344456	100345627	ENSG00000189419.6|SPATA41|lncRNA|chr15:100344456:100345627:-	0	-
#Deleted in new
chr15	100344477	100345627	ENSG00000189419.6|SPATA41|lncRNA|chr15:100344477:100345627:-	0	-
#Deleted in new
chr15	100348733	100349655	ENSG00000189419.6|SPATA41|lncRNA|chr15:100348733:100349655:-	0	-
#Deleted in new
chr15	100349307	100349388	ENSG00000189419.6|SPATA41|lncRNA|chr15:100349307:100349388:-	0	-
#Deleted in new
chr15	100425991	100426083	ENSG00000259430.1|CERS3-AS1|lncRNA|chr15:100425991:100426083:+	0	+
#Deleted in new
chr15	100503709	100503848	ENSG00000154227.13|CERS3|pc|chr15:100503709:100503848:-	0	-
#Partially deleted in new
chr15	100547764	100550153	ENSG00000270127.2|AC027020.2|lncRNA|chr15:100547764:100550153:-	0	-
#Deleted in new
chr15	100564691	100564785	ENSG00000140471.16|LINS1|pc|chr15:100564691:100564785:-	0	-
#Partially deleted in new
chr15	100566913	100570117	ENSG00000140471.16|LINS1|pc|chr15:100566913:100570117:-	0	-
#Deleted in new
chr15	100576574	100576702	ENSG00000140471.16|LINS1|pc|chr15:100576574:100576702:-	0	-
#Deleted in new
chr15	100586223	100586332	ENSG00000140471.16|LINS1|pc|chr15:100586223:100586332:-	0	-
#Deleted in new
chr15	100596909	100596936	ENSG00000140471.16|LINS1|pc|chr15:100596909:100596936:-	0	-
#Deleted in new
chr15	100782416	100786189	ENSG00000279588.2|AC087762.2|lncRNA|chr15:100782416:100786189:-	0	-
#Deleted in new
chr15	100783469	100785235	ENSG00000279588.2|AC087762.2|lncRNA|chr15:100783469:100785235:-	0	-
#Partially deleted in new
chr15	100828125	100828497	ENSG00000259579.1|AC087762.1|lncRNA|chr15:100828125:100828497:+	0	+
#Partially deleted in new
chr15	100849560	100849910	ENSG00000232386.9|AC015712.1|lncRNA|chr15:100849560:100849910:+	0	+
#Deleted in new
chr15	100849773	100849910	ENSG00000232386.9|AC015712.1|lncRNA|chr15:100849773:100849910:+	0	+
#Deleted in new
chr15	100849774	100849910	ENSG00000232386.9|AC015712.1|lncRNA|chr15:100849774:100849910:+	0	+
#Deleted in new
chr15	100849782	100849910	ENSG00000232386.9|AC015712.1|lncRNA|chr15:100849782:100849910:+	0	+
#Deleted in new
chr15	100849830	100849910	ENSG00000272808.3|AC015712.6|lncRNA|chr15:100849830:100849910:+	0	+
#Deleted in new
chr15	100850210	100850332	ENSG00000232386.9|AC015712.1|lncRNA|chr15:100850210:100850332:+	0	+
#Deleted in new
chr15	100850210	100850332	ENSG00000272808.3|AC015712.6|lncRNA|chr15:100850210:100850332:+	0	+
#Deleted in new
chr15	100850210	100850468	ENSG00000232386.9|AC015712.1|lncRNA|chr15:100850210:100850468:+	0	+
#Deleted in new
chr15	100850263	100850332	ENSG00000232386.9|AC015712.1|lncRNA|chr15:100850263:100850332:+	0	+
#Deleted in new
chr15	100855230	100855348	ENSG00000232386.9|AC015712.1|lncRNA|chr15:100855230:100855348:+	0	+
#Deleted in new
chr15	100855230	100855348	ENSG00000272808.3|AC015712.6|lncRNA|chr15:100855230:100855348:+	0	+
#Deleted in new
chr15	101043715	101044138	ENSG00000259376.1|AC090907.1|lncRNA|chr15:101043715:101044138:-	0	-
#Deleted in new
chr15	101049388	101049456	ENSG00000259376.1|AC090907.1|lncRNA|chr15:101049388:101049456:-	0	-
#Split in new
chr15	101068670	101078254	ENSG00000154237.12|LRRK1|pc|chr15:101068670:101078254:+	0	+
#Deleted in new
chr15	101085698	101086066	ENSG00000259755.1|AC090907.2|lncRNA|chr15:101085698:101086066:-	0	-
#Deleted in new
chr15	101186678	101186794	ENSG00000131873.5|CHSY1|pc|chr15:101186678:101186794:-	0	-
#Deleted in new
chr15	101270816	101271645	ENSG00000131871.14|SELENOS|pc|chr15:101270816:101271645:-	0	-
#Deleted in new
chr15	101271416	101271645	ENSG00000131871.14|SELENOS|pc|chr15:101271416:101271645:-	0	-
#Deleted in new
chr15	101289813	101289922	ENSG00000131876.16|SNRPA1|pc|chr15:101289813:101289922:-	0	-
#Partially deleted in new
chr15	101297141	101300869	ENSG00000140479.16|PCSK6|pc|chr15:101297141:101300869:-	0	-
#Partially deleted in new
chr15	101299655	101301648	ENSG00000279970.1|AC023024.2|lncRNA|chr15:101299655:101301648:-	0	-
#Deleted in new
chr15	101334190	101334254	ENSG00000140479.16|PCSK6|pc|chr15:101334190:101334254:-	0	-
#Deleted in new
chr15	101364873	101365044	ENSG00000140479.16|PCSK6|pc|chr15:101364873:101365044:-	0	-
#Deleted in new
chr15	101364907	101365044	ENSG00000140479.16|PCSK6|pc|chr15:101364907:101365044:-	0	-
#Deleted in new
chr15	101364998	101365044	ENSG00000140479.16|PCSK6|pc|chr15:101364998:101365044:-	0	-
#Deleted in new
chr15	101525079	101525202	ENSG00000140479.16|PCSK6|pc|chr15:101525079:101525202:-	0	-
#Deleted in new
chr15	101527580	101527860	ENSG00000282793.1|AC090164.4|lncRNA|chr15:101527580:101527860:-	0	-
#Deleted in new
chr15	101621443	101624977	ENSG00000184277.12|TM2D3|pc|chr15:101621443:101624977:-	0	-
#Deleted in new
chr15	101621643	101621755	ENSG00000184277.12|TM2D3|pc|chr15:101621643:101621755:-	0	-
#Deleted in new
chr15	101626447	101626563	ENSG00000184277.12|TM2D3|pc|chr15:101626447:101626563:-	0	-
#Deleted in new
chr15	101632942	101633026	ENSG00000184277.12|TM2D3|pc|chr15:101632942:101633026:-	0	-
#Deleted in new
chr15	101632976	101633728	ENSG00000184277.12|TM2D3|pc|chr15:101632976:101633728:-	0	-
#Deleted in new
chr15	101633142	101633697	ENSG00000184277.12|TM2D3|pc|chr15:101633142:101633697:-	0	-
#Deleted in new
chr15	101633256	101636358	ENSG00000184277.12|TM2D3|pc|chr15:101633256:101636358:-	0	-
#Deleted in new
chr15	101636479	101636934	ENSG00000184277.12|TM2D3|pc|chr15:101636479:101636934:-	0	-
#Deleted in new
chr15	101664169	101664442	ENSG00000185418.15|TARSL2|pc|chr15:101664169:101664442:-	0	-
#Deleted in new
chr15	101695759	101696039	ENSG00000185418.15|TARSL2|pc|chr15:101695759:101696039:-	0	-
#Deleted in new
chr15	101699330	101699435	ENSG00000185418.15|TARSL2|pc|chr15:101699330:101699435:-	0	-
#Deleted in new
chr15	101955484	101955689	ENSG00000248893.3|FAM138E|lncRNA|chr15:101955484:101955689:+	0	+
#Deleted in new
chr15	101955484	101955721	ENSG00000248893.3|FAM138E|lncRNA|chr15:101955484:101955721:+	0	+
#Deleted in new
chr15	101955791	101956412	ENSG00000248893.3|FAM138E|lncRNA|chr15:101955791:101956412:+	0	+
#Deleted in new
chr15	101959847	101959982	ENSG00000259553.5|AC140725.1|lncRNA|chr15:101959847:101959982:-	0	-
#Deleted in new
chr15	101959860	101959982	ENSG00000259553.5|AC140725.1|lncRNA|chr15:101959860:101959982:-	0	-
#Deleted in new
chr15	101960294	101960398	ENSG00000259553.5|AC140725.1|lncRNA|chr15:101960294:101960398:-	0	-
#Deleted in new
chr15	101960294	101960582	ENSG00000259553.5|AC140725.1|lncRNA|chr15:101960294:101960582:-	0	-
#Deleted in new
chr15	101960922	101961408	ENSG00000259553.5|AC140725.1|lncRNA|chr15:101960922:101961408:-	0	-
#Deleted in new
chr1	51129668	51129742	ENSG00000204006.8|C1orf185|pc|chr1:51129668:51129742:+	0	+
#Partially deleted in new
chr1	51195094	51197328	ENSG00000203356.2|LINC01562|lncRNA|chr1:51195094:51197328:-	0	-
#Deleted in new
chr1	51264915	51265215	ENSG00000236434.2|AL162430.2|lncRNA|chr1:51264915:51265215:-	0	-
#Partially deleted in new
chr1	51296784	51296860	ENSG00000085831.15|TTC39A|pc|chr1:51296784:51296860:-	0	-
#Partially deleted in new
chr1	51297217	51302416	ENSG00000085831.15|TTC39A|pc|chr1:51297217:51302416:-	0	-
#Deleted in new
chr1	51297790	51297960	ENSG00000085831.15|TTC39A|pc|chr1:51297790:51297960:-	0	-
#Deleted in new
chr1	51297790	51297990	ENSG00000085831.15|TTC39A|pc|chr1:51297790:51297990:-	0	-
#Deleted in new
chr1	51397110	51397211	ENSG00000085832.16|EPS15|pc|chr1:51397110:51397211:-	0	-
#Deleted in new
chr1	51457535	51458733	ENSG00000085832.16|EPS15|pc|chr1:51457535:51458733:-	0	-
#Deleted in new
chr1	51458395	51458733	ENSG00000085832.16|EPS15|pc|chr1:51458395:51458733:-	0	-
#Deleted in new
chr1	51459040	51459148	ENSG00000085832.16|EPS15|pc|chr1:51459040:51459148:-	0	-
#Deleted in new
chr1	51560881	51560961	ENSG00000227070.1|AC104170.1|lncRNA|chr1:51560881:51560961:+	0	+
#Deleted in new
chr1	51560884	51561023	ENSG00000227070.1|AC104170.1|lncRNA|chr1:51560884:51561023:+	0	+
#Deleted in new
chr1	51561470	51561629	ENSG00000227070.1|AC104170.1|lncRNA|chr1:51561470:51561629:+	0	+
#Deleted in new
chr1	51577178	51577256	ENSG00000117859.18|OSBPL9|pc|chr1:51577178:51577256:+	0	+
#Deleted in new
chr1	51598123	51598193	ENSG00000117859.18|OSBPL9|pc|chr1:51598123:51598193:+	0	+
#Deleted in new
chr1	51614304	51614419	ENSG00000117859.18|OSBPL9|pc|chr1:51614304:51614419:+	0	+
#Deleted in new
chr1	51749501	51749588	ENSG00000117859.18|OSBPL9|pc|chr1:51749501:51749588:+	0	+
#Deleted in new
chr1	51756940	51756995	ENSG00000117859.18|OSBPL9|pc|chr1:51756940:51756995:+	0	+
#Deleted in new
chr1	51759516	51759546	ENSG00000117859.18|OSBPL9|pc|chr1:51759516:51759546:+	0	+
#Deleted in new
chr1	51800856	51801094	ENSG00000078618.21|NRDC|pc|chr1:51800856:51801094:-	0	-
#Deleted in new
chr1	51801027	51801307	ENSG00000272175.1|AL050343.2|lncRNA|chr1:51801027:51801307:+	0	+
#Deleted in new
chr1	51862113	51862418	ENSG00000078618.21|NRDC|pc|chr1:51862113:51862418:-	0	-
#Deleted in new
chr15	20141793	20146430	ENSG00000278935.1|AC087386.2|lncRNA|chr15:20141793:20146430:+	0	+
#Deleted in new
chr15	20144868	20144958	ENSG00000258410.1|AC087386.1|lncRNA|chr15:20144868:20144958:-	0	-
#Deleted in new
chr15	20145821	20145992	ENSG00000258410.1|AC087386.1|lncRNA|chr15:20145821:20145992:-	0	-
#Deleted in new
chr15	20147701	20147953	ENSG00000258410.1|AC087386.1|lncRNA|chr15:20147701:20147953:-	0	-
#Deleted in new
chr15	20349317	20349451	ENSG00000258654.1|AC026495.1|lncRNA|chr15:20349317:20349451:+	0	+
#Deleted in new
chr15	20352360	20353120	ENSG00000258654.1|AC026495.1|lncRNA|chr15:20352360:20353120:+	0	+
#Deleted in new
chr15	20358873	20359159	ENSG00000258654.1|AC026495.1|lncRNA|chr15:20358873:20359159:+	0	+
#Deleted in new
chr15	20358873	20359166	ENSG00000258654.1|AC026495.1|lncRNA|chr15:20358873:20359166:+	0	+
#Deleted in new
chr1	52052406	52052683	ENSG00000228369.2|TXNDC12-AS1|lncRNA|chr1:52052406:52052683:+	0	+
#Deleted in new
chr15	20642798	20643448	ENSG00000278626.1|AC023310.4|lncRNA|chr15:20642798:20643448:-	0	-
#Partially deleted in new
chr1	52065286	52065408	ENSG00000134717.17|BTF3L4|pc|chr1:52065286:52065408:+	0	+
#Deleted in new
chr15	20658899	20661028	ENSG00000279628.1|AC131280.1|lncRNA|chr15:20658899:20661028:+	0	+
#Deleted in new
chr1	52071149	52071327	ENSG00000134717.17|BTF3L4|pc|chr1:52071149:52071327:+	0	+
#Deleted in new
chr15	20729746	20731094	ENSG00000260409.1|AC012414.5|lncRNA|chr15:20729746:20731094:-	0	-
#Deleted in new
chr15	20759310	20759907	ENSG00000259383.1|AC012414.3|lncRNA|chr15:20759310:20759907:-	0	-
#Partially deleted in new
chr15	20773083	20773600	ENSG00000259443.1|AC012414.4|lncRNA|chr15:20773083:20773600:+	0	+
#Duplicated in new
chr15	20845832	20845999	ENSG00000230031.10|POTEB2|pc|chr15:20845832:20845999:-	0	-
#Deleted in new
chr15	20940437	20940766	ENSG00000258710.7|LINC01193|lncRNA|chr15:20940437:20940766:+	0	+
#Deleted in new
chr15	20942374	20942560	ENSG00000258710.7|LINC01193|lncRNA|chr15:20942374:20942560:+	0	+
#Deleted in new
chr15	20972105	20972149	ENSG00000258710.7|LINC01193|lncRNA|chr15:20972105:20972149:+	0	+
#Deleted in new
chr15	20979019	20979357	ENSG00000258710.7|LINC01193|lncRNA|chr15:20979019:20979357:+	0	+
#Deleted in new
chr15	20979046	20979118	ENSG00000258710.7|LINC01193|lncRNA|chr15:20979046:20979118:+	0	+
#Deleted in new
chr15	20979064	20979118	ENSG00000258710.7|LINC01193|lncRNA|chr15:20979064:20979118:+	0	+
#Deleted in new
chr15	20981822	20981980	ENSG00000258710.7|LINC01193|lncRNA|chr15:20981822:20981980:+	0	+
#Deleted in new
chr15	20983099	20983414	ENSG00000258710.7|LINC01193|lncRNA|chr15:20983099:20983414:+	0	+
#Partially deleted in new
chr15	20990658	20990728	ENSG00000258710.7|LINC01193|lncRNA|chr15:20990658:20990728:+	0	+
#Deleted in new
chr15	20992936	20993271	ENSG00000258710.7|LINC01193|lncRNA|chr15:20992936:20993271:+	0	+
#Deleted in new
chr15	21127697	21127991	ENSG00000260986.1|AC126335.1|lncRNA|chr15:21127697:21127991:-	0	-
#Deleted in new
chr15	21129879	21130095	ENSG00000260986.1|AC126335.1|lncRNA|chr15:21129879:21130095:-	0	-
#Deleted in new
chr15	21148333	21152970	ENSG00000279595.1|AC126335.2|lncRNA|chr15:21148333:21152970:+	0	+
#Deleted in new
chr15	21298232	21300143	ENSG00000247765.2|AC068446.2|lncRNA|chr15:21298232:21300143:-	0	-
#Deleted in new
chr15	21328379	21328980	ENSG00000280881.1|AC060814.6|lncRNA|chr15:21328379:21328980:-	0	-
#Partially deleted in new
chr15	21342170	21342687	ENSG00000280703.1|AC060814.5|lncRNA|chr15:21342170:21342687:+	0	+
#Deleted in new
chr15	21368458	21370621	ENSG00000268531.3|AC060814.4|lncRNA|chr15:21368458:21370621:+	0	+
#Duplicated in new
chr15	21419463	21419630	ENSG00000278522.4|POTEB3|pc|chr15:21419463:21419630:-	0	-
#Deleted in new
chr15	21425018	21425289	ENSG00000278522.4|POTEB3|pc|chr15:21425018:21425289:-	0	-
#Deleted in new
chr15	21426027	21426248	ENSG00000278522.4|POTEB3|pc|chr15:21426027:21426248:-	0	-
#Partially deleted in new
chr15	21439490	21440382	ENSG00000278522.4|POTEB3|pc|chr15:21439490:21440382:-	0	-
#Partially deleted in new
chr15	21439490	21440451	ENSG00000278522.4|POTEB3|pc|chr15:21439490:21440451:-	0	-
#Deleted in new
chr15	21514143	21514472	ENSG00000280724.1|AC183088.1|lncRNA|chr15:21514143:21514472:+	0	+
#Deleted in new
chr15	21516081	21516267	ENSG00000280724.1|AC183088.1|lncRNA|chr15:21516081:21516267:+	0	+
#Deleted in new
chr15	21545854	21545898	ENSG00000280724.1|AC183088.1|lncRNA|chr15:21545854:21545898:+	0	+
#Deleted in new
chr15	21552794	21552865	ENSG00000280709.2|LINC02203|lncRNA|chr15:21552794:21552865:+	0	+
#Deleted in new
chr15	21555561	21555719	ENSG00000280709.2|LINC02203|lncRNA|chr15:21555561:21555719:+	0	+
#Deleted in new
chr15	21555561	21555719	ENSG00000280724.1|AC183088.1|lncRNA|chr15:21555561:21555719:+	0	+
#Deleted in new
chr15	21579911	21580010	ENSG00000280709.2|LINC02203|lncRNA|chr15:21579911:21580010:+	0	+
#Deleted in new
chr15	21616129	21616225	ENSG00000280709.2|LINC02203|lncRNA|chr15:21616129:21616225:+	0	+
#Deleted in new
chr15	21616729	21616818	ENSG00000280709.2|LINC02203|lncRNA|chr15:21616729:21616818:+	0	+
#Deleted in new
chr15	21617040	21617244	ENSG00000280709.2|LINC02203|lncRNA|chr15:21617040:21617244:+	0	+
#Deleted in new
chr15	21705530	21705627	ENSG00000281113.1|AC135068.7|lncRNA|chr15:21705530:21705627:-	0	-
#Duplicated in new
chr15	21856791	21856958	ENSG00000233917.8|POTEB|pc|chr15:21856791:21856958:-	0	-
#Deleted in new
chr15	21862349	21862620	ENSG00000233917.8|POTEB|pc|chr15:21862349:21862620:-	0	-
#Deleted in new
chr15	21863358	21863579	ENSG00000233917.8|POTEB|pc|chr15:21863358:21863579:-	0	-
#Deleted in new
chr15	21877620	21877703	ENSG00000233917.8|POTEB|pc|chr15:21877620:21877703:-	0	-
#Deleted in new
chr15	21990060	21990390	ENSG00000284500.1|AC134980.1|lncRNA|chr15:21990060:21990390:+	0	+
#Deleted in new
chr15	21990079	21990151	ENSG00000284500.1|AC134980.1|lncRNA|chr15:21990079:21990151:+	0	+
#Deleted in new
chr15	21990097	21990151	ENSG00000284500.1|AC134980.1|lncRNA|chr15:21990097:21990151:+	0	+
#Deleted in new
chr15	21992854	21993012	ENSG00000284500.1|AC134980.1|lncRNA|chr15:21992854:21993012:+	0	+
#Deleted in new
chr15	21994131	21994454	ENSG00000284500.1|AC134980.1|lncRNA|chr15:21994131:21994454:+	0	+
#Deleted in new
chr15	22003978	22004274	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22003978:22004274:+	0	+
#Deleted in new
chr15	22015231	22015331	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22015231:22015331:+	0	+
#Deleted in new
chr15	22015232	22015331	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22015232:22015331:+	0	+
#Deleted in new
chr15	22015260	22015331	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22015260:22015331:+	0	+
#Deleted in new
chr15	22030342	22030365	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22030342:22030365:+	0	+
#Deleted in new
chr15	22051534	22051687	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22051534:22051687:+	0	+
#Deleted in new
chr15	22058720	22058812	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22058720:22058812:+	0	+
#Deleted in new
chr15	22058720	22058816	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22058720:22058816:+	0	+
#Deleted in new
chr15	22059320	22059409	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22059320:22059409:+	0	+
#Deleted in new
chr15	22059631	22059821	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22059631:22059821:+	0	+
#Deleted in new
chr15	22059631	22059831	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22059631:22059831:+	0	+
#Deleted in new
chr15	22059631	22059835	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22059631:22059835:+	0	+
#Deleted in new
chr15	22059631	22059901	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22059631:22059901:+	0	+
#Deleted in new
chr15	22059643	22059835	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22059643:22059835:+	0	+
#Deleted in new
chr15	22120315	22120447	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22120315:22120447:+	0	+
#Deleted in new
chr15	22120315	22120514	ENSG00000284500.1|AC134980.1|lncRNA|chr15:22120315:22120514:+	0	+
#Deleted in new
chr15	22148152	22148226	ENSG00000260739.1|AC010760.1|lncRNA|chr15:22148152:22148226:-	0	-
#Split in new
chr15	22467481	22469226	ENSG00000277865.4|GOLGA6L22|pc|chr15:22467481:22469226:+	0	+
#Split in new
chr15	22467481	22469230	ENSG00000277865.4|GOLGA6L22|pc|chr15:22467481:22469230:+	0	+
#Deleted in new
chr15	22777766	22778741	ENSG00000274253.4|AC138649.1|lncRNA|chr15:22777766:22778741:+	0	+
#Deleted in new
chr15	22785898	22786248	ENSG00000170113.15|NIPA1|pc|chr15:22785898:22786248:+	0	+
#Deleted in new
chr15	22786217	22786248	ENSG00000170113.15|NIPA1|pc|chr15:22786217:22786248:+	0	+
#Deleted in new
chr15	22947910	22948029	ENSG00000273749.4|CYFIP1|pc|chr15:22947910:22948029:-	0	-
#Deleted in new
chr15	22981008	22981063	ENSG00000273749.4|CYFIP1|pc|chr15:22981008:22981063:-	0	-
#Deleted in new
chr15	22983191	22983611	ENSG00000275835.4|TUBGCP5|pc|chr15:22983191:22983611:-	0	-
#Deleted in new
chr15	22996844	22996958	ENSG00000275835.4|TUBGCP5|pc|chr15:22996844:22996958:-	0	-
#Partially deleted in new
chr15	23128267	23128813	ENSG00000273976.1|GOLGA6L1|pc|chr15:23128267:23128813:-	0	-
#Deleted in new
chr15	23575345	23575482	ENSG00000179455.7|MKRN3|pc|chr15:23575345:23575482:+	0	+
#Deleted in new
chr15	23610623	23611564	ENSG00000179455.7|MKRN3|pc|chr15:23610623:23611564:+	0	+
#Deleted in new
chr15	23627765	23630075	ENSG00000179455.7|MKRN3|pc|chr15:23627765:23630075:+	0	+
#Deleted in new
chr15	23912408	23912531	ENSG00000261622.1|AC021439.1|lncRNA|chr15:23912408:23912531:+	0	+
#Deleted in new
chr15	23913067	23913170	ENSG00000261622.1|AC021439.1|lncRNA|chr15:23913067:23913170:+	0	+
#Deleted in new
chr15	23914234	23914304	ENSG00000261622.1|AC021439.1|lncRNA|chr15:23914234:23914304:+	0	+
#Deleted in new
chr15	23914650	23914826	ENSG00000261622.1|AC021439.1|lncRNA|chr15:23914650:23914826:+	0	+
#Deleted in new
chr15	23935210	23935309	ENSG00000261622.1|AC021439.1|lncRNA|chr15:23935210:23935309:+	0	+
#Deleted in new
chr15	23941696	23941716	ENSG00000261622.1|AC021439.1|lncRNA|chr15:23941696:23941716:+	0	+
#Deleted in new
chr15	23975171	23975255	ENSG00000260232.1|PWRN4|lncRNA|chr15:23975171:23975255:+	0	+
#Deleted in new
chr15	23976146	23976243	ENSG00000260232.1|PWRN4|lncRNA|chr15:23976146:23976243:+	0	+
#Deleted in new
chr15	23979070	23979211	ENSG00000260232.1|PWRN4|lncRNA|chr15:23979070:23979211:+	0	+
#Deleted in new
chr15	24003337	24003435	ENSG00000260232.1|PWRN4|lncRNA|chr15:24003337:24003435:+	0	+
#Deleted in new
chr1	52404245	52404387	ENSG00000085840.12|ORC1|pc|chr1:52404245:52404387:-	0	-
#Partially deleted in new
chr1	52404245	52404459	ENSG00000085840.12|ORC1|pc|chr1:52404245:52404459:-	0	-
#Deleted in new
chr1	52409485	52409606	ENSG00000134744.13|ZCCHC11|pc|chr1:52409485:52409606:-	0	-
#Deleted in new
chr15	24162753	24163282	ENSG00000260551.1|PWRN2|lncRNA|chr15:24162753:24163282:-	0	-
#Deleted in new
chr15	24162754	24163020	ENSG00000260551.1|PWRN2|lncRNA|chr15:24162754:24163020:-	0	-
#Deleted in new
chr15	24164776	24168895	ENSG00000260551.1|PWRN2|lncRNA|chr15:24164776:24168895:-	0	-
#Deleted in new
chr15	24169772	24169857	ENSG00000260551.1|PWRN2|lncRNA|chr15:24169772:24169857:-	0	-
#Deleted in new
chr15	24169772	24169874	ENSG00000260551.1|PWRN2|lncRNA|chr15:24169772:24169874:-	0	-
#Deleted in new
chr15	24169772	24169948	ENSG00000260551.1|PWRN2|lncRNA|chr15:24169772:24169948:-	0	-
#Deleted in new
chr15	24206783	24206893	ENSG00000260780.1|AC087463.1|lncRNA|chr15:24206783:24206893:+	0	+
#Deleted in new
chr15	24225295	24225627	ENSG00000260780.1|AC087463.1|lncRNA|chr15:24225295:24225627:+	0	+
#Deleted in new
chr15	24225740	24225854	ENSG00000260780.1|AC087463.1|lncRNA|chr15:24225740:24225854:+	0	+
#Deleted in new
chr15	24235077	24235159	ENSG00000261621.1|AC087463.4|lncRNA|chr15:24235077:24235159:+	0	+
#Deleted in new
chr15	24238144	24238366	ENSG00000260959.1|AC087463.2|lncRNA|chr15:24238144:24238366:-	0	-
#Deleted in new
chr15	24239942	24240192	ENSG00000260959.1|AC087463.2|lncRNA|chr15:24239942:24240192:-	0	-
#Deleted in new
chr15	24257116	24257257	ENSG00000261621.1|AC087463.4|lncRNA|chr15:24257116:24257257:+	0	+
#Deleted in new
chr15	24261278	24261332	ENSG00000261621.1|AC087463.4|lncRNA|chr15:24261278:24261332:+	0	+
#Deleted in new
chr15	24274790	24274952	ENSG00000261621.1|AC087463.4|lncRNA|chr15:24274790:24274952:+	0	+
#Deleted in new
chr15	24274790	24275015	ENSG00000261621.1|AC087463.4|lncRNA|chr15:24274790:24275015:+	0	+
#Deleted in new
chr15	24276466	24276829	ENSG00000261621.1|AC087463.4|lncRNA|chr15:24276466:24276829:+	0	+
#Deleted in new
chr15	24299748	24299769	ENSG00000261598.1|AC087463.3|lncRNA|chr15:24299748:24299769:+	0	+
#Deleted in new
chr15	24300244	24300638	ENSG00000261598.1|AC087463.3|lncRNA|chr15:24300244:24300638:+	0	+
#Partially deleted in new
chr1	52431012	52434670	ENSG00000134744.13|ZCCHC11|pc|chr1:52431012:52434670:-	0	-
#Partially deleted in new
chr1	52433088	52435465	ENSG00000134744.13|ZCCHC11|pc|chr1:52433088:52435465:-	0	-
#Deleted in new
chr15	24441126	24441200	ENSG00000260760.1|PWRN3|lncRNA|chr15:24441126:24441200:+	0	+
#Deleted in new
chr15	24442747	24442991	ENSG00000260760.1|PWRN3|lncRNA|chr15:24442747:24442991:+	0	+
#Deleted in new
chr15	24444492	24444633	ENSG00000260760.1|PWRN3|lncRNA|chr15:24444492:24444633:+	0	+
#Deleted in new
chr15	24447577	24447967	ENSG00000260760.1|PWRN3|lncRNA|chr15:24447577:24447967:+	0	+
#Deleted in new
chr15	24493136	24493328	ENSG00000259905.5|PWRN1|lncRNA|chr15:24493136:24493328:+	0	+
#Deleted in new
chr15	24507338	24507478	ENSG00000259905.5|PWRN1|lncRNA|chr15:24507338:24507478:+	0	+
#Deleted in new
chr15	24507953	24508140	ENSG00000259905.5|PWRN1|lncRNA|chr15:24507953:24508140:+	0	+
#Deleted in new
chr15	24508860	24508994	ENSG00000259905.5|PWRN1|lncRNA|chr15:24508860:24508994:+	0	+
#Deleted in new
chr15	24512979	24513144	ENSG00000259905.5|PWRN1|lncRNA|chr15:24512979:24513144:+	0	+
#Deleted in new
chr15	24513069	24513173	ENSG00000259905.5|PWRN1|lncRNA|chr15:24513069:24513173:+	0	+
#Deleted in new
chr15	24513622	24513737	ENSG00000259905.5|PWRN1|lncRNA|chr15:24513622:24513737:+	0	+
#Deleted in new
chr15	24521680	24521830	ENSG00000259905.5|PWRN1|lncRNA|chr15:24521680:24521830:+	0	+
#Deleted in new
chr15	24533694	24533908	ENSG00000259905.5|PWRN1|lncRNA|chr15:24533694:24533908:+	0	+
#Deleted in new
chr15	24533694	24533952	ENSG00000259905.5|PWRN1|lncRNA|chr15:24533694:24533952:+	0	+
#Deleted in new
chr15	24535679	24535806	ENSG00000259905.5|PWRN1|lncRNA|chr15:24535679:24535806:+	0	+
#Deleted in new
chr15	24547795	24547924	ENSG00000259905.5|PWRN1|lncRNA|chr15:24547795:24547924:+	0	+
#Deleted in new
chr15	24548383	24548470	ENSG00000259905.5|PWRN1|lncRNA|chr15:24548383:24548470:+	0	+
#Deleted in new
chr15	24558151	24558321	ENSG00000259905.5|PWRN1|lncRNA|chr15:24558151:24558321:+	0	+
#Deleted in new
chr15	24558157	24559592	ENSG00000259905.5|PWRN1|lncRNA|chr15:24558157:24559592:+	0	+
#Deleted in new
chr15	24558171	24558321	ENSG00000259905.5|PWRN1|lncRNA|chr15:24558171:24558321:+	0	+
#Deleted in new
chr15	24558216	24558321	ENSG00000259905.5|PWRN1|lncRNA|chr15:24558216:24558321:+	0	+
#Deleted in new
chr15	24566088	24566212	ENSG00000259905.5|PWRN1|lncRNA|chr15:24566088:24566212:+	0	+
#Deleted in new
chr15	24566655	24566780	ENSG00000259905.5|PWRN1|lncRNA|chr15:24566655:24566780:+	0	+
#Deleted in new
chr15	24566655	24566800	ENSG00000259905.5|PWRN1|lncRNA|chr15:24566655:24566800:+	0	+
#Deleted in new
chr15	24567891	24568121	ENSG00000259905.5|PWRN1|lncRNA|chr15:24567891:24568121:+	0	+
#Deleted in new
chr15	24567896	24568182	ENSG00000259905.5|PWRN1|lncRNA|chr15:24567896:24568182:+	0	+
#Deleted in new
chr15	24568530	24568563	ENSG00000259905.5|PWRN1|lncRNA|chr15:24568530:24568563:+	0	+
#Deleted in new
chr15	24569782	24569809	ENSG00000259905.5|PWRN1|lncRNA|chr15:24569782:24569809:+	0	+
#Deleted in new
chr15	24570025	24570128	ENSG00000259905.5|PWRN1|lncRNA|chr15:24570025:24570128:+	0	+
#Deleted in new
chr15	24570031	24570128	ENSG00000259905.5|PWRN1|lncRNA|chr15:24570031:24570128:+	0	+
#Deleted in new
chr15	24574509	24574527	ENSG00000259905.5|PWRN1|lncRNA|chr15:24574509:24574527:+	0	+
#Deleted in new
chr15	24574509	24574744	ENSG00000259905.5|PWRN1|lncRNA|chr15:24574509:24574744:+	0	+
#Deleted in new
chr15	24574509	24574813	ENSG00000259905.5|PWRN1|lncRNA|chr15:24574509:24574813:+	0	+
#Deleted in new
chr15	24574906	24575003	ENSG00000259905.5|PWRN1|lncRNA|chr15:24574906:24575003:+	0	+
#Deleted in new
chr15	24574951	24575003	ENSG00000259905.5|PWRN1|lncRNA|chr15:24574951:24575003:+	0	+
#Deleted in new
chr15	24580226	24580330	ENSG00000259905.5|PWRN1|lncRNA|chr15:24580226:24580330:+	0	+
#Deleted in new
chr15	24587566	24587773	ENSG00000259905.5|PWRN1|lncRNA|chr15:24587566:24587773:+	0	+
#Deleted in new
chr15	24587566	24587777	ENSG00000259905.5|PWRN1|lncRNA|chr15:24587566:24587777:+	0	+
#Deleted in new
chr15	24587566	24587779	ENSG00000259905.5|PWRN1|lncRNA|chr15:24587566:24587779:+	0	+
#Deleted in new
chr15	24587596	24587735	ENSG00000259905.5|PWRN1|lncRNA|chr15:24587596:24587735:+	0	+
#Partially deleted in new
chr1	52462177	52463777	ENSG00000134744.13|ZCCHC11|pc|chr1:52462177:52463777:-	0	-
#Deleted in new
chr15	24623967	24624105	ENSG00000259905.5|PWRN1|lncRNA|chr15:24623967:24624105:+	0	+
#Deleted in new
chr15	24623967	24624109	ENSG00000259905.5|PWRN1|lncRNA|chr15:24623967:24624109:+	0	+
#Deleted in new
chr15	24652034	24652116	ENSG00000259905.5|PWRN1|lncRNA|chr15:24652034:24652116:+	0	+
#Deleted in new
chr15	24652039	24652130	ENSG00000259905.5|PWRN1|lncRNA|chr15:24652039:24652130:+	0	+
#Partially deleted in new
chr15	24675867	24683393	ENSG00000185823.3|NPAP1|pc|chr15:24675867:24683393:+	0	+
#Deleted in new
chr15	24823636	24823823	ENSG00000128739.21|SNRPN|pc|chr15:24823636:24823823:+	0	+
#Deleted in new
chr15	24823646	24823850	ENSG00000128739.21|SNRPN|pc|chr15:24823646:24823850:+	0	+
#Deleted in new
chr15	24829797	24829905	ENSG00000128739.21|SNRPN|pc|chr15:24829797:24829905:+	0	+
#Deleted in new
chr15	24848356	24852253	ENSG00000280118.1|AC090983.1|lncRNA|chr15:24848356:24852253:+	0	+
#Deleted in new
chr15	24856550	24856716	ENSG00000128739.21|SNRPN|pc|chr15:24856550:24856716:+	0	+
#Deleted in new
chr15	24856600	24856716	ENSG00000128739.21|SNRPN|pc|chr15:24856600:24856716:+	0	+
#Deleted in new
chr15	24886515	24886589	ENSG00000128739.21|SNRPN|pc|chr15:24886515:24886589:+	0	+
#Deleted in new
chr15	24920010	24920124	ENSG00000128739.21|SNRPN|pc|chr15:24920010:24920124:+	0	+
#Deleted in new
chr15	24920472	24920547	ENSG00000128739.21|SNRPN|pc|chr15:24920472:24920547:+	0	+
#Deleted in new
chr15	24967028	24967152	ENSG00000128739.21|SNRPN|pc|chr15:24967028:24967152:+	0	+
#Deleted in new
chr15	24967028	24967240	ENSG00000128739.21|SNRPN|pc|chr15:24967028:24967240:+	0	+
#Deleted in new
chr15	24974641	24974957	ENSG00000128739.21|SNRPN|pc|chr15:24974641:24974957:+	0	+
#Partially deleted in new
chr15	24978582	24979642	ENSG00000224078.13|SNHG14|lncRNA|chr15:24978582:24979642:+	0	+
#Deleted in new
chr15	24979535	24979642	ENSG00000214265.11|AC124312.1|pc|chr15:24979535:24979642:+	0	+
#Deleted in new
chr15	24979556	24979642	ENSG00000224078.13|SNHG14|lncRNA|chr15:24979556:24979642:+	0	+
#Deleted in new
chr15	24979946	24980084	ENSG00000214265.11|AC124312.1|pc|chr15:24979946:24980084:+	0	+
#Deleted in new
chr15	24979946	24980084	ENSG00000224078.13|SNHG14|lncRNA|chr15:24979946:24980084:+	0	+
#Partially deleted in new
chr15	24985052	24988232	ENSG00000279192.1|PWAR5|lncRNA|chr15:24985052:24988232:+	0	+
#Deleted in new
chr15	24991485	24991753	ENSG00000271347.1|AC124312.5|lncRNA|chr15:24991485:24991753:+	0	+
#Deleted in new
chr15	24998365	24998486	ENSG00000224078.13|SNHG14|lncRNA|chr15:24998365:24998486:+	0	+
#Deleted in new
chr15	24998969	24999078	ENSG00000214265.11|AC124312.1|pc|chr15:24998969:24999078:+	0	+
#Deleted in new
chr15	24998969	24999078	ENSG00000224078.13|SNHG14|lncRNA|chr15:24998969:24999078:+	0	+
#Deleted in new
chr15	25000244	25000276	ENSG00000214265.11|AC124312.1|pc|chr15:25000244:25000276:+	0	+
#Deleted in new
chr15	25000244	25000374	ENSG00000224078.13|SNHG14|lncRNA|chr15:25000244:25000374:+	0	+
#Deleted in new
chr15	25000304	25000374	ENSG00000224078.13|SNHG14|lncRNA|chr15:25000304:25000374:+	0	+
#Deleted in new
chr15	25000313	25000374	ENSG00000224078.13|SNHG14|lncRNA|chr15:25000313:25000374:+	0	+
#Deleted in new
chr15	25031817	25032047	ENSG00000257647.1|AC124312.2|lncRNA|chr15:25031817:25032047:-	0	-
#Partially deleted in new
chr15	25031872	25036490	ENSG00000257151.1|PWAR6|lncRNA|chr15:25031872:25036490:+	0	+
#Deleted in new
chr15	25041688	25042910	ENSG00000224078.13|SNHG14|lncRNA|chr15:25041688:25042910:+	0	+
#Deleted in new
chr15	25041917	25042428	ENSG00000224078.13|SNHG14|lncRNA|chr15:25041917:25042428:+	0	+
#Deleted in new
chr15	25050631	25050722	ENSG00000224078.13|SNHG14|lncRNA|chr15:25050631:25050722:+	0	+
#Deleted in new
chr15	25051088	25051236	ENSG00000224078.13|SNHG14|lncRNA|chr15:25051088:25051236:+	0	+
#Deleted in new
chr15	25051101	25051236	ENSG00000224078.13|SNHG14|lncRNA|chr15:25051101:25051236:+	0	+
#Deleted in new
chr15	25053265	25053363	ENSG00000224078.13|SNHG14|lncRNA|chr15:25053265:25053363:+	0	+
#Deleted in new
chr15	25053827	25053916	ENSG00000224078.13|SNHG14|lncRNA|chr15:25053827:25053916:+	0	+
#Deleted in new
chr15	25053827	25053967	ENSG00000224078.13|SNHG14|lncRNA|chr15:25053827:25053967:+	0	+
#Deleted in new
chr15	25055073	25055230	ENSG00000224078.13|SNHG14|lncRNA|chr15:25055073:25055230:+	0	+
#Deleted in new
chr15	25056482	25056565	ENSG00000224078.13|SNHG14|lncRNA|chr15:25056482:25056565:+	0	+
#Deleted in new
chr15	25056482	25056622	ENSG00000224078.13|SNHG14|lncRNA|chr15:25056482:25056622:+	0	+
#Deleted in new
chr15	25059154	25059294	ENSG00000224078.13|SNHG14|lncRNA|chr15:25059154:25059294:+	0	+
#Deleted in new
chr15	25061949	25062088	ENSG00000224078.13|SNHG14|lncRNA|chr15:25061949:25062088:+	0	+
#Deleted in new
chr15	25064714	25064855	ENSG00000224078.13|SNHG14|lncRNA|chr15:25064714:25064855:+	0	+
#Deleted in new
chr15	25064770	25064855	ENSG00000224078.13|SNHG14|lncRNA|chr15:25064770:25064855:+	0	+
#Deleted in new
chr15	25067411	25067531	ENSG00000224078.13|SNHG14|lncRNA|chr15:25067411:25067531:+	0	+
#Deleted in new
chr15	25070119	25070259	ENSG00000224078.13|SNHG14|lncRNA|chr15:25070119:25070259:+	0	+
#Deleted in new
chr15	25070125	25070259	ENSG00000224078.13|SNHG14|lncRNA|chr15:25070125:25070259:+	0	+
#Deleted in new
chr15	25072724	25072863	ENSG00000224078.13|SNHG14|lncRNA|chr15:25072724:25072863:+	0	+
#Deleted in new
chr15	25073891	25074051	ENSG00000224078.13|SNHG14|lncRNA|chr15:25073891:25074051:+	0	+
#Deleted in new
chr15	25075734	25075866	ENSG00000224078.13|SNHG14|lncRNA|chr15:25075734:25075866:+	0	+
#Deleted in new
chr15	25076856	25076990	ENSG00000224078.13|SNHG14|lncRNA|chr15:25076856:25076990:+	0	+
#Deleted in new
chr15	25078861	25078995	ENSG00000224078.13|SNHG14|lncRNA|chr15:25078861:25078995:+	0	+
#Deleted in new
chr15	25079825	25080079	ENSG00000224078.13|SNHG14|lncRNA|chr15:25079825:25080079:+	0	+
#Deleted in new
chr15	25081090	25081224	ENSG00000224078.13|SNHG14|lncRNA|chr15:25081090:25081224:+	0	+
#Deleted in new
chr15	25081153	25081224	ENSG00000224078.13|SNHG14|lncRNA|chr15:25081153:25081224:+	0	+
#Deleted in new
chr15	25082588	25082705	ENSG00000224078.13|SNHG14|lncRNA|chr15:25082588:25082705:+	0	+
#Deleted in new
chr15	25083395	25083527	ENSG00000224078.13|SNHG14|lncRNA|chr15:25083395:25083527:+	0	+
#Deleted in new
chr15	25085189	25085322	ENSG00000224078.13|SNHG14|lncRNA|chr15:25085189:25085322:+	0	+
#Deleted in new
chr15	25085270	25085322	ENSG00000224078.13|SNHG14|lncRNA|chr15:25085270:25085322:+	0	+
#Deleted in new
chr15	25087466	25087599	ENSG00000224078.13|SNHG14|lncRNA|chr15:25087466:25087599:+	0	+
#Partially deleted in new
chr15	25087466	25089866	ENSG00000224078.13|SNHG14|lncRNA|chr15:25087466:25089866:+	0	+
#Partially deleted in new
chr15	25087660	25088896	ENSG00000261069.3|AC124312.3|lncRNA|chr15:25087660:25088896:+	0	+
#Deleted in new
chr15	25089613	25089866	ENSG00000224078.13|SNHG14|lncRNA|chr15:25089613:25089866:+	0	+
#Deleted in new
chr15	25091589	25091719	ENSG00000224078.13|SNHG14|lncRNA|chr15:25091589:25091719:+	0	+
#Deleted in new
chr15	25091959	25092377	ENSG00000279735.2|AC124312.6|lncRNA|chr15:25091959:25092377:-	0	-
#Deleted in new
chr15	25091960	25092377	ENSG00000279735.2|AC124312.6|lncRNA|chr15:25091960:25092377:-	0	-
#Deleted in new
chr15	25093833	25093974	ENSG00000224078.13|SNHG14|lncRNA|chr15:25093833:25093974:+	0	+
#Deleted in new
chr15	25095626	25095728	ENSG00000224078.13|SNHG14|lncRNA|chr15:25095626:25095728:+	0	+
#Deleted in new
chr15	25095626	25095828	ENSG00000224078.13|SNHG14|lncRNA|chr15:25095626:25095828:+	0	+
#Deleted in new
chr15	25097320	25097439	ENSG00000224078.13|SNHG14|lncRNA|chr15:25097320:25097439:+	0	+
#Deleted in new
chr15	25098716	25098828	ENSG00000224078.13|SNHG14|lncRNA|chr15:25098716:25098828:+	0	+
#Deleted in new
chr15	25099144	25099278	ENSG00000224078.13|SNHG14|lncRNA|chr15:25099144:25099278:+	0	+
#Deleted in new
chr15	25099144	25102147	ENSG00000224078.13|SNHG14|lncRNA|chr15:25099144:25102147:+	0	+
#Deleted in new
chr15	25103858	25103970	ENSG00000224078.13|SNHG14|lncRNA|chr15:25103858:25103970:+	0	+
#Deleted in new
chr15	25103858	25106294	ENSG00000224078.13|SNHG14|lncRNA|chr15:25103858:25106294:+	0	+
#Deleted in new
chr15	25106163	25106294	ENSG00000224078.13|SNHG14|lncRNA|chr15:25106163:25106294:+	0	+
#Deleted in new
chr15	25107471	25107588	ENSG00000224078.13|SNHG14|lncRNA|chr15:25107471:25107588:+	0	+
#Deleted in new
chr15	25107909	25108038	ENSG00000224078.13|SNHG14|lncRNA|chr15:25107909:25108038:+	0	+
#Deleted in new
chr15	25108997	25109103	ENSG00000224078.13|SNHG14|lncRNA|chr15:25108997:25109103:+	0	+
#Deleted in new
chr15	25109197	25109403	ENSG00000224078.13|SNHG14|lncRNA|chr15:25109197:25109403:+	0	+
#Deleted in new
chr15	25109554	25109715	ENSG00000224078.13|SNHG14|lncRNA|chr15:25109554:25109715:+	0	+
#Deleted in new
chr15	25109554	25113927	ENSG00000224078.13|SNHG14|lncRNA|chr15:25109554:25113927:+	0	+
#Deleted in new
chr15	25110385	25110455	ENSG00000224078.13|SNHG14|lncRNA|chr15:25110385:25110455:+	0	+
#Deleted in new
chr15	25111764	25111894	ENSG00000224078.13|SNHG14|lncRNA|chr15:25111764:25111894:+	0	+
#Deleted in new
chr15	25116544	25117515	ENSG00000224078.13|SNHG14|lncRNA|chr15:25116544:25117515:+	0	+
#Deleted in new
chr15	25117409	25117515	ENSG00000224078.13|SNHG14|lncRNA|chr15:25117409:25117515:+	0	+
#Deleted in new
chr15	25117471	25117515	ENSG00000224078.13|SNHG14|lncRNA|chr15:25117471:25117515:+	0	+
#Deleted in new
chr15	25118267	25118382	ENSG00000224078.13|SNHG14|lncRNA|chr15:25118267:25118382:+	0	+
#Deleted in new
chr15	25130977	25131337	ENSG00000270523.1|AC124303.1|lncRNA|chr15:25130977:25131337:+	0	+
#Deleted in new
chr15	25135641	25138055	ENSG00000279050.1|PWAR1|lncRNA|chr15:25135641:25138055:+	0	+
#Deleted in new
chr15	25170535	25170666	ENSG00000224078.13|SNHG14|lncRNA|chr15:25170535:25170666:+	0	+
#Deleted in new
chr15	25171047	25171092	ENSG00000224078.13|SNHG14|lncRNA|chr15:25171047:25171092:+	0	+
#Deleted in new
chr15	25172447	25172578	ENSG00000224078.13|SNHG14|lncRNA|chr15:25172447:25172578:+	0	+
#Deleted in new
chr15	25172949	25172996	ENSG00000224078.13|SNHG14|lncRNA|chr15:25172949:25172996:+	0	+
#Deleted in new
chr15	25172978	25173099	ENSG00000224078.13|SNHG14|lncRNA|chr15:25172978:25173099:+	0	+
#Deleted in new
chr15	25174812	25174870	ENSG00000224078.13|SNHG14|lncRNA|chr15:25174812:25174870:+	0	+
#Deleted in new
chr15	25175238	25175283	ENSG00000224078.13|SNHG14|lncRNA|chr15:25175238:25175283:+	0	+
#Deleted in new
chr15	25177156	25177199	ENSG00000224078.13|SNHG14|lncRNA|chr15:25177156:25177199:+	0	+
#Deleted in new
chr15	25178549	25178681	ENSG00000224078.13|SNHG14|lncRNA|chr15:25178549:25178681:+	0	+
#Deleted in new
chr15	25179063	25179107	ENSG00000224078.13|SNHG14|lncRNA|chr15:25179063:25179107:+	0	+
#Deleted in new
chr15	25180308	25180440	ENSG00000224078.13|SNHG14|lncRNA|chr15:25180308:25180440:+	0	+
#Deleted in new
chr15	25180313	25180440	ENSG00000224078.13|SNHG14|lncRNA|chr15:25180313:25180440:+	0	+
#Deleted in new
chr15	25181809	25181895	ENSG00000224078.13|SNHG14|lncRNA|chr15:25181809:25181895:+	0	+
#Deleted in new
chr15	25181842	25181895	ENSG00000224078.13|SNHG14|lncRNA|chr15:25181842:25181895:+	0	+
#Deleted in new
chr15	25182018	25182051	ENSG00000224078.13|SNHG14|lncRNA|chr15:25182018:25182051:+	0	+
#Deleted in new
chr15	25182018	25182105	ENSG00000224078.13|SNHG14|lncRNA|chr15:25182018:25182105:+	0	+
#Deleted in new
chr15	25182196	25182328	ENSG00000224078.13|SNHG14|lncRNA|chr15:25182196:25182328:+	0	+
#Deleted in new
chr15	25182711	25182754	ENSG00000224078.13|SNHG14|lncRNA|chr15:25182711:25182754:+	0	+
#Deleted in new
chr15	25183940	25184075	ENSG00000224078.13|SNHG14|lncRNA|chr15:25183940:25184075:+	0	+
#Deleted in new
chr15	25185442	25185574	ENSG00000224078.13|SNHG14|lncRNA|chr15:25185442:25185574:+	0	+
#Deleted in new
chr15	25185959	25186007	ENSG00000224078.13|SNHG14|lncRNA|chr15:25185959:25186007:+	0	+
#Deleted in new
chr15	25187348	25187479	ENSG00000224078.13|SNHG14|lncRNA|chr15:25187348:25187479:+	0	+
#Deleted in new
chr15	25187861	25187905	ENSG00000224078.13|SNHG14|lncRNA|chr15:25187861:25187905:+	0	+
#Deleted in new
chr15	25189222	25189354	ENSG00000224078.13|SNHG14|lncRNA|chr15:25189222:25189354:+	0	+
#Deleted in new
chr15	25189302	25189354	ENSG00000224078.13|SNHG14|lncRNA|chr15:25189302:25189354:+	0	+
#Deleted in new
chr15	25189740	25189784	ENSG00000224078.13|SNHG14|lncRNA|chr15:25189740:25189784:+	0	+
#Deleted in new
chr15	25191239	25191350	ENSG00000224078.13|SNHG14|lncRNA|chr15:25191239:25191350:+	0	+
#Deleted in new
chr15	25191716	25191762	ENSG00000224078.13|SNHG14|lncRNA|chr15:25191716:25191762:+	0	+
#Deleted in new
chr15	25193646	25193691	ENSG00000224078.13|SNHG14|lncRNA|chr15:25193646:25193691:+	0	+
#Deleted in new
chr15	25195246	25195290	ENSG00000224078.13|SNHG14|lncRNA|chr15:25195246:25195290:+	0	+
#Deleted in new
chr15	25197381	25197502	ENSG00000224078.13|SNHG14|lncRNA|chr15:25197381:25197502:+	0	+
#Deleted in new
chr15	25197381	25197513	ENSG00000224078.13|SNHG14|lncRNA|chr15:25197381:25197513:+	0	+
#Deleted in new
chr15	25197427	25197513	ENSG00000224078.13|SNHG14|lncRNA|chr15:25197427:25197513:+	0	+
#Deleted in new
chr15	25197908	25197953	ENSG00000224078.13|SNHG14|lncRNA|chr15:25197908:25197953:+	0	+
#Deleted in new
chr15	25199261	25199391	ENSG00000224078.13|SNHG14|lncRNA|chr15:25199261:25199391:+	0	+
#Deleted in new
chr15	25199777	25199823	ENSG00000224078.13|SNHG14|lncRNA|chr15:25199777:25199823:+	0	+
#Deleted in new
chr15	25201135	25201266	ENSG00000224078.13|SNHG14|lncRNA|chr15:25201135:25201266:+	0	+
#Deleted in new
chr15	25201651	25201695	ENSG00000224078.13|SNHG14|lncRNA|chr15:25201651:25201695:+	0	+
#Deleted in new
chr15	25203039	25203170	ENSG00000224078.13|SNHG14|lncRNA|chr15:25203039:25203170:+	0	+
#Deleted in new
chr15	25203551	25203596	ENSG00000224078.13|SNHG14|lncRNA|chr15:25203551:25203596:+	0	+
#Deleted in new
chr15	25203551	25204300	ENSG00000224078.13|SNHG14|lncRNA|chr15:25203551:25204300:+	0	+
#Deleted in new
chr15	25204169	25204300	ENSG00000224078.13|SNHG14|lncRNA|chr15:25204169:25204300:+	0	+
#Deleted in new
chr15	25204683	25204728	ENSG00000224078.13|SNHG14|lncRNA|chr15:25204683:25204728:+	0	+
#Deleted in new
chr15	25206042	25206200	ENSG00000224078.13|SNHG14|lncRNA|chr15:25206042:25206200:+	0	+
#Deleted in new
chr15	25206079	25206200	ENSG00000224078.13|SNHG14|lncRNA|chr15:25206079:25206200:+	0	+
#Deleted in new
chr15	25206584	25206629	ENSG00000224078.13|SNHG14|lncRNA|chr15:25206584:25206629:+	0	+
#Deleted in new
chr15	25207895	25208027	ENSG00000224078.13|SNHG14|lncRNA|chr15:25207895:25208027:+	0	+
#Deleted in new
chr15	25209731	25209861	ENSG00000224078.13|SNHG14|lncRNA|chr15:25209731:25209861:+	0	+
#Deleted in new
chr15	25211606	25211738	ENSG00000224078.13|SNHG14|lncRNA|chr15:25211606:25211738:+	0	+
#Deleted in new
chr15	25212123	25212169	ENSG00000224078.13|SNHG14|lncRNA|chr15:25212123:25212169:+	0	+
#Deleted in new
chr15	25213458	25213529	ENSG00000224078.13|SNHG14|lncRNA|chr15:25213458:25213529:+	0	+
#Deleted in new
chr15	25213458	25213590	ENSG00000224078.13|SNHG14|lncRNA|chr15:25213458:25213590:+	0	+
#Deleted in new
chr15	25213973	25214018	ENSG00000224078.13|SNHG14|lncRNA|chr15:25213973:25214018:+	0	+
#Deleted in new
chr15	25217212	25217342	ENSG00000224078.13|SNHG14|lncRNA|chr15:25217212:25217342:+	0	+
#Partially deleted in new
chr15	25218351	25218972	ENSG00000224078.13|SNHG14|lncRNA|chr15:25218351:25218972:+	0	+
#Deleted in new
chr15	25218439	25218564	ENSG00000224078.13|SNHG14|lncRNA|chr15:25218439:25218564:+	0	+
#Deleted in new
chr15	25218927	25218972	ENSG00000224078.13|SNHG14|lncRNA|chr15:25218927:25218972:+	0	+
#Deleted in new
chr15	25222158	25222285	ENSG00000224078.13|SNHG14|lncRNA|chr15:25222158:25222285:+	0	+
#Deleted in new
chr15	25222158	25222290	ENSG00000224078.13|SNHG14|lncRNA|chr15:25222158:25222290:+	0	+
#Deleted in new
chr15	25223058	25223190	ENSG00000224078.13|SNHG14|lncRNA|chr15:25223058:25223190:+	0	+
#Deleted in new
chr15	25223574	25223618	ENSG00000224078.13|SNHG14|lncRNA|chr15:25223574:25223618:+	0	+
#Deleted in new
chr15	25225014	25225146	ENSG00000224078.13|SNHG14|lncRNA|chr15:25225014:25225146:+	0	+
#Deleted in new
chr15	25225528	25225573	ENSG00000224078.13|SNHG14|lncRNA|chr15:25225528:25225573:+	0	+
#Deleted in new
chr15	25226917	25227049	ENSG00000224078.13|SNHG14|lncRNA|chr15:25226917:25227049:+	0	+
#Deleted in new
chr15	25228779	25228911	ENSG00000224078.13|SNHG14|lncRNA|chr15:25228779:25228911:+	0	+
#Deleted in new
chr15	25229293	25229334	ENSG00000224078.13|SNHG14|lncRNA|chr15:25229293:25229334:+	0	+
#Deleted in new
chr15	25230669	25230781	ENSG00000224078.13|SNHG14|lncRNA|chr15:25230669:25230781:+	0	+
#Deleted in new
chr15	25231165	25231210	ENSG00000224078.13|SNHG14|lncRNA|chr15:25231165:25231210:+	0	+
#Deleted in new
chr15	25232199	25232331	ENSG00000224078.13|SNHG14|lncRNA|chr15:25232199:25232331:+	0	+
#Deleted in new
chr15	25232710	25232755	ENSG00000224078.13|SNHG14|lncRNA|chr15:25232710:25232755:+	0	+
#Deleted in new
chr15	25234057	25234203	ENSG00000224078.13|SNHG14|lncRNA|chr15:25234057:25234203:+	0	+
#Deleted in new
chr15	25234574	25234617	ENSG00000224078.13|SNHG14|lncRNA|chr15:25234574:25234617:+	0	+
#Deleted in new
chr15	25236408	25236453	ENSG00000224078.13|SNHG14|lncRNA|chr15:25236408:25236453:+	0	+
#Deleted in new
chr15	25240167	25240212	ENSG00000224078.13|SNHG14|lncRNA|chr15:25240167:25240212:+	0	+
#Deleted in new
chr15	25241558	25241690	ENSG00000224078.13|SNHG14|lncRNA|chr15:25241558:25241690:+	0	+
#Deleted in new
chr15	25242071	25242116	ENSG00000224078.13|SNHG14|lncRNA|chr15:25242071:25242116:+	0	+
#Deleted in new
chr15	25243426	25243557	ENSG00000224078.13|SNHG14|lncRNA|chr15:25243426:25243557:+	0	+
#Deleted in new
chr15	25243939	25243984	ENSG00000224078.13|SNHG14|lncRNA|chr15:25243939:25243984:+	0	+
#Deleted in new
chr15	25244134	25244271	ENSG00000224078.13|SNHG14|lncRNA|chr15:25244134:25244271:+	0	+
#Deleted in new
chr15	25245137	25245209	ENSG00000224078.13|SNHG14|lncRNA|chr15:25245137:25245209:+	0	+
#Deleted in new
chr15	25245288	25245421	ENSG00000224078.13|SNHG14|lncRNA|chr15:25245288:25245421:+	0	+
#Deleted in new
chr15	25245805	25245850	ENSG00000224078.13|SNHG14|lncRNA|chr15:25245805:25245850:+	0	+
#Deleted in new
chr15	25247156	25247289	ENSG00000224078.13|SNHG14|lncRNA|chr15:25247156:25247289:+	0	+
#Deleted in new
chr15	25247671	25247716	ENSG00000224078.13|SNHG14|lncRNA|chr15:25247671:25247716:+	0	+
#Deleted in new
chr15	25247866	25248003	ENSG00000224078.13|SNHG14|lncRNA|chr15:25247866:25248003:+	0	+
#Deleted in new
chr15	25250680	25250811	ENSG00000224078.13|SNHG14|lncRNA|chr15:25250680:25250811:+	0	+
#Deleted in new
chr15	25251175	25251219	ENSG00000224078.13|SNHG14|lncRNA|chr15:25251175:25251219:+	0	+
#Deleted in new
chr15	25252224	25252333	ENSG00000224078.13|SNHG14|lncRNA|chr15:25252224:25252333:+	0	+
#Deleted in new
chr15	25255578	25257027	ENSG00000280234.1|AC124303.2|lncRNA|chr15:25255578:25257027:+	0	+
#Deleted in new
chr15	25266430	25266614	ENSG00000224078.13|SNHG14|lncRNA|chr15:25266430:25266614:+	0	+
#Deleted in new
chr15	25266911	25267044	ENSG00000224078.13|SNHG14|lncRNA|chr15:25266911:25267044:+	0	+
#Deleted in new
chr15	25268328	25268453	ENSG00000224078.13|SNHG14|lncRNA|chr15:25268328:25268453:+	0	+
#Deleted in new
chr15	25269604	25269733	ENSG00000224078.13|SNHG14|lncRNA|chr15:25269604:25269733:+	0	+
#Deleted in new
chr15	25269686	25269733	ENSG00000224078.13|SNHG14|lncRNA|chr15:25269686:25269733:+	0	+
#Deleted in new
chr15	25271417	25271534	ENSG00000224078.13|SNHG14|lncRNA|chr15:25271417:25271534:+	0	+
#Deleted in new
chr15	25277366	25277409	ENSG00000224078.13|SNHG14|lncRNA|chr15:25277366:25277409:+	0	+
#Deleted in new
chr15	25278846	25278884	ENSG00000224078.13|SNHG14|lncRNA|chr15:25278846:25278884:+	0	+
#Deleted in new
chr1	52529767	52529885	ENSG00000134744.13|ZCCHC11|pc|chr1:52529767:52529885:-	0	-
#Deleted in new
chr15	25345632	25347235	ENSG00000261529.1|AC100774.1|lncRNA|chr15:25345632:25347235:-	0	-
#Deleted in new
chr15	25345979	25346031	ENSG00000114062.18|UBE3A|pc|chr15:25345979:25346031:-	0	-
#Deleted in new
chr1	52534986	52535122	ENSG00000134744.13|ZCCHC11|pc|chr1:52534986:52535122:-	0	-
#Deleted in new
chr15	25357333	25357575	ENSG00000114062.18|UBE3A|pc|chr15:25357333:25357575:-	0	-
#Deleted in new
chr1	52538523	52538643	ENSG00000134744.13|ZCCHC11|pc|chr1:52538523:52538643:-	0	-
#Deleted in new
chr15	25391595	25391791	ENSG00000224078.13|SNHG14|lncRNA|chr15:25391595:25391791:+	0	+
#Deleted in new
chr15	25393745	25393858	ENSG00000114062.18|UBE3A|pc|chr15:25393745:25393858:-	0	-
#Deleted in new
chr15	25415709	25415842	ENSG00000114062.18|UBE3A|pc|chr15:25415709:25415842:-	0	-
#Deleted in new
chr15	25415714	25415842	ENSG00000114062.18|UBE3A|pc|chr15:25415714:25415842:-	0	-
#Deleted in new
chr15	25417933	25419445	ENSG00000224078.13|SNHG14|lncRNA|chr15:25417933:25419445:+	0	+
#Deleted in new
chr15	25418787	25419462	ENSG00000224078.13|SNHG14|lncRNA|chr15:25418787:25419462:+	0	+
#Deleted in new
chr15	25420655	25420733	ENSG00000114062.18|UBE3A|pc|chr15:25420655:25420733:-	0	-
#Deleted in new
chr15	25420655	25420752	ENSG00000114062.18|UBE3A|pc|chr15:25420655:25420752:-	0	-
#Deleted in new
chr15	25421925	25421961	ENSG00000114062.18|UBE3A|pc|chr15:25421925:25421961:-	0	-
#Partially deleted in new
chr15	25484830	25486838	ENSG00000235731.1|LINC02250|lncRNA|chr15:25484830:25486838:-	0	-
#Deleted in new
chr15	25501084	25501252	ENSG00000235731.1|LINC02250|lncRNA|chr15:25501084:25501252:-	0	-
#Deleted in new
chr15	25578624	25578791	ENSG00000235731.1|LINC02250|lncRNA|chr15:25578624:25578791:-	0	-
#Deleted in new
chr15	25841481	25841580	ENSG00000206190.11|ATP10A|pc|chr15:25841481:25841580:-	0	-
#Deleted in new
chr15	25841488	25841580	ENSG00000206190.11|ATP10A|pc|chr15:25841488:25841580:-	0	-
#Deleted in new
chr15	25841661	25841763	ENSG00000206190.11|ATP10A|pc|chr15:25841661:25841763:-	0	-
#Deleted in new
chr15	25861780	25861857	ENSG00000206190.11|ATP10A|pc|chr15:25861780:25861857:-	0	-
#Deleted in new
chr15	25861781	25861857	ENSG00000206190.11|ATP10A|pc|chr15:25861781:25861857:-	0	-
#Deleted in new
chr15	25876707	25877211	ENSG00000259011.1|AC016266.1|lncRNA|chr15:25876707:25877211:+	0	+
#Deleted in new
chr15	25902359	25902566	ENSG00000206187.3|LINC02346|lncRNA|chr15:25902359:25902566:+	0	+
#Deleted in new
chr15	25902432	25902562	ENSG00000206187.3|LINC02346|lncRNA|chr15:25902432:25902562:+	0	+
#Deleted in new
chr15	26015333	26016021	ENSG00000206187.3|LINC02346|lncRNA|chr15:26015333:26016021:+	0	+
#Deleted in new
chr15	26049124	26049242	ENSG00000206187.3|LINC02346|lncRNA|chr15:26049124:26049242:+	0	+
#Deleted in new
chr15	26050537	26050794	ENSG00000258931.1|AC100836.1|lncRNA|chr15:26050537:26050794:-	0	-
#Deleted in new
chr15	26051656	26052276	ENSG00000258931.1|AC100836.1|lncRNA|chr15:26051656:26052276:-	0	-
#Deleted in new
chr15	26052027	26052227	ENSG00000206187.3|LINC02346|lncRNA|chr15:26052027:26052227:+	0	+
#Partially deleted in new
chr15	26052366	26053120	ENSG00000206187.3|LINC02346|lncRNA|chr15:26052366:26053120:+	0	+
#Deleted in new
chr15	26118707	26118828	ENSG00000259150.5|LINC00929|lncRNA|chr15:26118707:26118828:+	0	+
#Deleted in new
chr15	26395071	26395244	ENSG00000235160.1|LINC02248|lncRNA|chr15:26395071:26395244:+	0	+
#Deleted in new
chr1	52639974	52640067	ENSG00000182183.14|FAM159A|pc|chr1:52639974:52640067:+	0	+
#Deleted in new
chr15	26433373	26433716	ENSG00000235160.1|LINC02248|lncRNA|chr15:26433373:26433716:+	0	+
#Deleted in new
chr15	26446428	26446601	ENSG00000235160.1|LINC02248|lncRNA|chr15:26446428:26446601:+	0	+
#Partially deleted in new
chr15	26446428	26446774	ENSG00000235160.1|LINC02248|lncRNA|chr15:26446428:26446774:+	0	+
#Deleted in new
chr15	26550070	26550114	ENSG00000166206.14|GABRB3|pc|chr15:26550070:26550114:-	0	-
#Deleted in new
chr15	26553382	26553520	ENSG00000166206.14|GABRB3|pc|chr15:26553382:26553520:-	0	-
#Deleted in new
chr15	26581146	26581210	ENSG00000166206.14|GABRB3|pc|chr15:26581146:26581210:-	0	-
#Partially deleted in new
chr15	26611857	26615717	ENSG00000166206.14|GABRB3|pc|chr15:26611857:26615717:-	0	-
#Deleted in new
chr15	26625431	26625534	ENSG00000166206.14|GABRB3|pc|chr15:26625431:26625534:-	0	-
#Deleted in new
chr15	26628976	26629090	ENSG00000166206.14|GABRB3|pc|chr15:26628976:26629090:-	0	-
#Deleted in new
chr15	26628976	26629178	ENSG00000166206.14|GABRB3|pc|chr15:26628976:26629178:-	0	-
#Partially deleted in new
chr15	26642432	26642528	ENSG00000166206.14|GABRB3|pc|chr15:26642432:26642528:-	0	-
#Deleted in new
chr15	26658443	26658763	ENSG00000235518.2|AC011196.1|lncRNA|chr15:26658443:26658763:-	0	-
#Partially deleted in new
chr15	26716613	26716765	ENSG00000166206.14|GABRB3|pc|chr15:26716613:26716765:-	0	-
#Deleted in new
chr15	26749934	26750150	ENSG00000166206.14|GABRB3|pc|chr15:26749934:26750150:-	0	-
#Deleted in new
chr15	26789848	26790300	ENSG00000166206.14|GABRB3|pc|chr15:26789848:26790300:-	0	-
#Deleted in new
chr15	26796004	26796092	ENSG00000166206.14|GABRB3|pc|chr15:26796004:26796092:-	0	-
#Deleted in new
chr15	26798386	26798446	ENSG00000166206.14|GABRB3|pc|chr15:26798386:26798446:-	0	-
#Deleted in new
chr15	27161021	27161319	ENSG00000228740.2|GABRG3-AS1|lncRNA|chr15:27161021:27161319:-	0	-
#Deleted in new
chr15	27271540	27271637	ENSG00000182256.12|GABRG3|pc|chr15:27271540:27271637:+	0	+
#Deleted in new
chr15	27271541	27271637	ENSG00000182256.12|GABRG3|pc|chr15:27271541:27271637:+	0	+
#Deleted in new
chr15	27294848	27295197	ENSG00000182256.12|GABRG3|pc|chr15:27294848:27295197:+	0	+
#Deleted in new
chr15	27350126	27350396	ENSG00000182256.12|GABRG3|pc|chr15:27350126:27350396:+	0	+
#Deleted in new
chr15	27420681	27420735	ENSG00000258970.1|AC104002.1|lncRNA|chr15:27420681:27420735:-	0	-
#Deleted in new
chr15	27422380	27422433	ENSG00000259152.1|AC104002.2|lncRNA|chr15:27422380:27422433:+	0	+
#Deleted in new
chr15	27428073	27428338	ENSG00000259152.1|AC104002.2|lncRNA|chr15:27428073:27428338:+	0	+
#Deleted in new
chr15	27483034	27483296	ENSG00000259168.1|AC104002.3|lncRNA|chr15:27483034:27483296:-	0	-
#Deleted in new
chr15	27621533	27621677	ENSG00000258594.1|AC021979.1|lncRNA|chr15:27621533:27621677:+	0	+
#Deleted in new
chr15	27622391	27622465	ENSG00000258594.1|AC021979.1|lncRNA|chr15:27622391:27622465:+	0	+
#Deleted in new
chr15	27629171	27629289	ENSG00000258594.1|AC021979.1|lncRNA|chr15:27629171:27629289:+	0	+
#Deleted in new
chr15	27684497	27684570	ENSG00000258853.1|AC021979.2|lncRNA|chr15:27684497:27684570:-	0	-
#Deleted in new
chr15	27685632	27685768	ENSG00000258853.1|AC021979.2|lncRNA|chr15:27685632:27685768:-	0	-
#Deleted in new
chr15	27775620	27775696	ENSG00000232394.1|AC090696.1|lncRNA|chr15:27775620:27775696:+	0	+
#Deleted in new
chr15	27776456	27776798	ENSG00000232394.1|AC090696.1|lncRNA|chr15:27776456:27776798:+	0	+
#Deleted in new
chr1	52805470	52805524	ENSG00000162378.12|ZYG11B|pc|chr1:52805470:52805524:+	0	+
#Partially deleted in new
chr15	28320121	28320464	ENSG00000128731.15|HERC2|pc|chr15:28320121:28320464:-	0	-
#Deleted in new
chr15	28718433	28718589	ENSG00000188626.6|GOLGA8M|pc|chr15:28718433:28718589:-	0	-
#Deleted in new
chr15	28738333	28738384	ENSG00000188626.6|GOLGA8M|pc|chr15:28738333:28738384:-	0	-
#Partially deleted in new
chr15	28738333	28738431	ENSG00000261480.1|GOLGA8M|lncRNA|chr15:28738333:28738431:-	0	-
#Duplicated in new
chr15	28841832	28843440	ENSG00000261649.6|GOLGA6L7P|pc|chr15:28841832:28843440:-	0	-
#Partially deleted in new
chr15	28884482	28884613	ENSG00000034053.14|APBA2|pc|chr15:28884482:28884613:+	0	+
#Deleted in new
chr15	28921636	28921749	ENSG00000034053.14|APBA2|pc|chr15:28921636:28921749:+	0	+
#Deleted in new
chr15	28921639	28921718	ENSG00000034053.14|APBA2|pc|chr15:28921639:28921718:+	0	+
#Deleted in new
chr15	28921639	28921749	ENSG00000034053.14|APBA2|pc|chr15:28921639:28921749:+	0	+
#Split in new
chr1	52892781	52894998	ENSG00000203995.9|ZYG11A|pc|chr1:52892781:52894998:+	0	+
#Partially deleted in new
chr1	52894043	52894991	ENSG00000203995.9|ZYG11A|pc|chr1:52894043:52894991:+	0	+
#Partially deleted in new
chr1	52895909	52896597	ENSG00000121310.16|ECHDC2|pc|chr1:52895909:52896597:-	0	-
#Partially deleted in new
chr1	52895983	52896597	ENSG00000121310.16|ECHDC2|pc|chr1:52895983:52896597:-	0	-
#Partially deleted in new
chr1	52896224	52902041	ENSG00000121310.16|ECHDC2|pc|chr1:52896224:52902041:-	0	-
#Deleted in new
chr15	28970195	28970512	ENSG00000259277.1|AC127522.1|lncRNA|chr15:28970195:28970512:-	0	-
#Partially deleted in new
chr1	52897436	52899224	ENSG00000121310.16|ECHDC2|pc|chr1:52897436:52899224:-	0	-
#Deleted in new
chr15	28977030	28977464	ENSG00000259277.1|AC127522.1|lncRNA|chr15:28977030:28977464:-	0	-
#Partially deleted in new
chr15	28990418	28990796	ENSG00000034053.14|APBA2|pc|chr15:28990418:28990796:+	0	+
#Deleted in new
chr1	52907013	52907101	ENSG00000121310.16|ECHDC2|pc|chr1:52907013:52907101:-	0	-
#Deleted in new
chr1	52912753	52912830	ENSG00000121310.16|ECHDC2|pc|chr1:52912753:52912830:-	0	-
#Deleted in new
chr1	52912753	52912849	ENSG00000121310.16|ECHDC2|pc|chr1:52912753:52912849:-	0	-
#Deleted in new
chr1	52912753	52913344	ENSG00000121310.16|ECHDC2|pc|chr1:52912753:52913344:-	0	-
#Deleted in new
chr1	52913419	52914095	ENSG00000121310.16|ECHDC2|pc|chr1:52913419:52914095:-	0	-
#Deleted in new
chr1	52913719	52914095	ENSG00000121310.16|ECHDC2|pc|chr1:52913719:52914095:-	0	-
#Deleted in new
chr1	52913894	52913930	ENSG00000121310.16|ECHDC2|pc|chr1:52913894:52913930:-	0	-
#Deleted in new
chr1	52913894	52914077	ENSG00000121310.16|ECHDC2|pc|chr1:52913894:52914077:-	0	-
#Deleted in new
chr1	52913894	52914095	ENSG00000121310.16|ECHDC2|pc|chr1:52913894:52914095:-	0	-
#Deleted in new
chr1	52915130	52915292	ENSG00000121310.16|ECHDC2|pc|chr1:52915130:52915292:-	0	-
#Deleted in new
chr1	52917543	52917615	ENSG00000121310.16|ECHDC2|pc|chr1:52917543:52917615:-	0	-
#Partially deleted in new
chr1	52921397	52921515	ENSG00000121310.16|ECHDC2|pc|chr1:52921397:52921515:-	0	-
#Partially deleted in new
chr15	29373601	29376956	ENSG00000259690.1|AC107980.1|lncRNA|chr15:29373601:29376956:-	0	-
#Deleted in new
chr15	29609675	29611212	ENSG00000259814.1|AC102941.1|lncRNA|chr15:29609675:29611212:-	0	-
#Deleted in new
chr1	52963640	52963720	ENSG00000116171.17|SCP2|pc|chr1:52963640:52963720:+	0	+
#Deleted in new
chr15	29674989	29675526	ENSG00000256802.2|AC022613.1|lncRNA|chr15:29674989:29675526:+	0	+
#Deleted in new
chr15	29677175	29679168	ENSG00000256802.2|AC022613.1|lncRNA|chr15:29677175:29679168:+	0	+
#Deleted in new
chr15	29677212	29677416	ENSG00000256802.2|AC022613.1|lncRNA|chr15:29677212:29677416:+	0	+
#Deleted in new
chr15	29680751	29680957	ENSG00000256802.2|AC022613.1|lncRNA|chr15:29680751:29680957:+	0	+
#Partially deleted in new
chr15	29758902	29760308	ENSG00000104067.16|TJP1|pc|chr15:29758902:29760308:-	0	-
#Partially deleted in new
chr15	30179008	30179129	ENSG00000259906.1|AC120045.1|lncRNA|chr15:30179008:30179129:-	0	-
#Deleted in new
chr1	5301927	5302004	ENSG00000284616.1|AL139823.1|lncRNA|chr1:5301927:5302004:-	0	-
#Deleted in new
chr15	30210407	30210806	ENSG00000225930.3|LINC02249|lncRNA|chr15:30210407:30210806:+	0	+
#Partially deleted in new
chr15	30210416	30214540	ENSG00000225930.3|LINC02249|lncRNA|chr15:30210416:30214540:+	0	+
#Deleted in new
chr1	5303327	5303393	ENSG00000284616.1|AL139823.1|lncRNA|chr1:5303327:5303393:-	0	-
#Partially deleted in new
chr15	30344306	30348236	ENSG00000279417.1|AC019322.4|lncRNA|chr15:30344306:30348236:-	0	-
#Partially deleted in new
chr15	30393793	30393849	ENSG00000166664.13|CHRFAM7A|pc|chr15:30393793:30393849:-	0	-
#Deleted in new
chr15	30540092	30540539	ENSG00000260693.1|AC026150.1|lncRNA|chr15:30540092:30540539:+	0	+
#Deleted in new
chr15	30545811	30545969	ENSG00000260693.1|AC026150.1|lncRNA|chr15:30545811:30545969:+	0	+
#Deleted in new
chr15	30624493	30624612	ENSG00000187951.10|ARHGAP11B|pc|chr15:30624493:30624612:+	0	+
#Deleted in new
chr15	30624547	30624612	ENSG00000187951.10|ARHGAP11B|pc|chr15:30624547:30624612:+	0	+
#Deleted in new
chr15	30641521	30641617	ENSG00000187951.10|ARHGAP11B|pc|chr15:30641521:30641617:+	0	+
#Deleted in new
chr15	30648796	30649529	ENSG00000269974.1|AC091057.3|lncRNA|chr15:30648796:30649529:+	0	+
#Deleted in new
chr15	30685360	30685606	ENSG00000187951.10|ARHGAP11B|pc|chr15:30685360:30685606:+	0	+
#Deleted in new
chr15	30685360	30685607	ENSG00000187951.10|ARHGAP11B|pc|chr15:30685360:30685607:+	0	+
#Deleted in new
chr1	5306941	5307394	ENSG00000284616.1|AL139823.1|lncRNA|chr1:5306941:5307394:-	0	-
#Deleted in new
chr15	30767857	30768126	ENSG00000187951.10|ARHGAP11B|pc|chr15:30767857:30768126:+	0	+
#Deleted in new
chr15	30767857	30772993	ENSG00000187951.10|ARHGAP11B|pc|chr15:30767857:30772993:+	0	+
#Deleted in new
chr15	30903872	30904011	ENSG00000198690.9|FAN1|pc|chr15:30903872:30904011:+	0	+
#Deleted in new
chr15	30903891	30904024	ENSG00000198690.9|FAN1|pc|chr15:30903891:30904024:+	0	+
#Deleted in new
chr15	30903892	30904011	ENSG00000198690.9|FAN1|pc|chr15:30903892:30904011:+	0	+
#Deleted in new
chr15	30903911	30904024	ENSG00000198690.9|FAN1|pc|chr15:30903911:30904024:+	0	+
#Deleted in new
chr15	30906370	30906504	ENSG00000198690.9|FAN1|pc|chr15:30906370:30906504:+	0	+
#Deleted in new
chr15	31081352	31081438	ENSG00000134160.13|TRPM1|pc|chr15:31081352:31081438:-	0	-
#Deleted in new
chr1	53118395	53118609	ENSG00000235563.1|AL445183.2|lncRNA|chr1:53118395:53118609:+	0	+
#Partially deleted in new
chr15	31219288	31220720	ENSG00000259448.2|LINC02352|lncRNA|chr15:31219288:31220720:+	0	+
#Deleted in new
chr15	31221998	31222298	ENSG00000259772.6|AC012236.1|lncRNA|chr15:31221998:31222298:-	0	-
#Deleted in new
chr15	31222431	31222516	ENSG00000259772.6|AC012236.1|lncRNA|chr15:31222431:31222516:-	0	-
#Deleted in new
chr15	31222766	31223336	ENSG00000259772.6|AC012236.1|lncRNA|chr15:31222766:31223336:-	0	-
#Deleted in new
chr15	31222775	31223107	ENSG00000259772.6|AC012236.1|lncRNA|chr15:31222775:31223107:-	0	-
#Deleted in new
chr15	31222795	31223151	ENSG00000259772.6|AC012236.1|lncRNA|chr15:31222795:31223151:-	0	-
#Deleted in new
chr15	31222962	31223431	ENSG00000259772.6|AC012236.1|lncRNA|chr15:31222962:31223431:-	0	-
#Deleted in new
chr15	31223249	31223431	ENSG00000259772.6|AC012236.1|lncRNA|chr15:31223249:31223431:-	0	-
#Deleted in new
chr15	31392842	31393255	ENSG00000169926.10|KLF13|pc|chr15:31392842:31393255:+	0	+
#Deleted in new
chr15	31393574	31393691	ENSG00000169926.10|KLF13|pc|chr15:31393574:31393691:+	0	+
#Deleted in new
chr15	31393575	31393691	ENSG00000169926.10|KLF13|pc|chr15:31393575:31393691:+	0	+
#Deleted in new
chr15	31403427	31404729	ENSG00000169926.10|KLF13|pc|chr15:31403427:31404729:+	0	+
#Deleted in new
chr15	31649678	31649829	ENSG00000169918.9|OTUD7A|pc|chr15:31649678:31649829:-	0	-
#Deleted in new
chr15	31923437	31923667	ENSG00000175344.17|CHRNA7|pc|chr15:31923437:31923667:+	0	+
#Deleted in new
chr15	31966430	31966566	ENSG00000175344.17|CHRNA7|pc|chr15:31966430:31966566:+	0	+
#Deleted in new
chr15	31966470	31966566	ENSG00000175344.17|CHRNA7|pc|chr15:31966470:31966566:+	0	+
#Deleted in new
chr1	53212780	53212816	ENSG00000157184.6|CPT2|pc|chr1:53212780:53212816:+	0	+
#Deleted in new
chr15	32156136	32156261	ENSG00000175344.17|CHRNA7|pc|chr15:32156136:32156261:+	0	+
#Deleted in new
chr15	32156671	32156797	ENSG00000175344.17|CHRNA7|pc|chr15:32156671:32156797:+	0	+
#Deleted in new
chr15	32160449	32160942	ENSG00000175344.17|CHRNA7|pc|chr15:32160449:32160942:+	0	+
#Partially deleted in new
chr15	32182550	32186475	ENSG00000279912.1|AC068448.1|lncRNA|chr15:32182550:32186475:+	0	+
#Partially deleted in new
chr1	53220662	53224253	ENSG00000259818.1|AL606760.3|lncRNA|chr1:53220662:53224253:+	0	+
#Partially deleted in new
chr1	53233121	53233652	ENSG00000162385.10|MAGOH|pc|chr1:53233121:53233652:-	0	-
#Partially deleted in new
chr15	32359537	32359658	ENSG00000260642.1|AC139426.2|lncRNA|chr15:32359537:32359658:+	0	+
#Deleted in new
chr15	32406218	32406298	ENSG00000215304.3|AC135983.1|lncRNA|chr15:32406218:32406298:-	0	-
#Deleted in new
chr15	32406997	32407217	ENSG00000215304.3|AC135983.1|lncRNA|chr15:32406997:32407217:-	0	-
#Partially deleted in new
chr15	32435129	32435233	ENSG00000215304.3|AC135983.1|lncRNA|chr15:32435129:32435233:-	0	-
#Partially deleted in new
chr15	32536046	32536149	ENSG00000261064.1|LINC02256|lncRNA|chr15:32536046:32536149:+	0	+
#Deleted in new
chr15	32575570	32575643	ENSG00000261064.1|LINC02256|lncRNA|chr15:32575570:32575643:+	0	+
#Deleted in new
chr15	32583611	32584312	ENSG00000276724.1|AC123768.4|lncRNA|chr15:32583611:32584312:+	0	+
#Deleted in new
chr15	32587269	32587613	ENSG00000261064.1|LINC02256|lncRNA|chr15:32587269:32587613:+	0	+
#Deleted in new
chr15	32613732	32613998	ENSG00000244952.2|AC123768.2|lncRNA|chr15:32613732:32613998:+	0	+
#Deleted in new
chr15	32614436	32614696	ENSG00000262728.5|AC123768.3|lncRNA|chr15:32614436:32614696:-	0	-
#Deleted in new
chr15	32614436	32614714	ENSG00000262728.5|AC123768.3|lncRNA|chr15:32614436:32614714:-	0	-
#Deleted in new
chr15	32860679	32860837	ENSG00000248905.8|FMN1|pc|chr15:32860679:32860837:-	0	-
#Deleted in new
chr1	53305277	53305424	ENSG00000232762.1|AL355483.3|lncRNA|chr1:53305277:53305424:+	0	+
#Deleted in new
chr1	53305782	53305905	ENSG00000232762.1|AL355483.3|lncRNA|chr1:53305782:53305905:+	0	+
#Deleted in new
chr1	53306086	53306191	ENSG00000232762.1|AL355483.3|lncRNA|chr1:53306086:53306191:+	0	+
#Deleted in new
chr15	33105757	33106236	ENSG00000279958.1|AC019278.1|lncRNA|chr15:33105757:33106236:-	0	-
#Deleted in new
chr15	33180197	33180262	ENSG00000248905.8|FMN1|pc|chr15:33180197:33180262:-	0	-
#Deleted in new
chr1	53331167	53331251	ENSG00000225675.2|LINC01771|lncRNA|chr1:53331167:53331251:+	0	+
#Deleted in new
chr1	53336169	53336509	ENSG00000225675.2|LINC01771|lncRNA|chr1:53336169:53336509:+	0	+
#Deleted in new
chr1	53366667	53367277	ENSG00000230138.1|AC119428.2|lncRNA|chr1:53366667:53367277:-	0	-
#Deleted in new
chr1	53368005	53368245	ENSG00000230138.1|AC119428.2|lncRNA|chr1:53368005:53368245:-	0	-
#Deleted in new
chr15	33841799	33841829	ENSG00000198838.13|RYR3|pc|chr15:33841799:33841829:+	0	+
#Deleted in new
chr15	33847029	33847089	ENSG00000198838.13|RYR3|pc|chr15:33847029:33847089:+	0	+
#Deleted in new
chr15	33847115	33847231	ENSG00000198838.13|RYR3|pc|chr15:33847115:33847231:+	0	+
#Deleted in new
chr15	33847570	33847613	ENSG00000198838.13|RYR3|pc|chr15:33847570:33847613:+	0	+
#Deleted in new
chr15	33858078	33858149	ENSG00000198838.13|RYR3|pc|chr15:33858078:33858149:+	0	+
#Deleted in new
chr15	33858138	33858192	ENSG00000198838.13|RYR3|pc|chr15:33858138:33858192:+	0	+
#Deleted in new
chr15	33883651	33883736	ENSG00000169857.7|AVEN|pc|chr15:33883651:33883736:-	0	-
#Deleted in new
chr15	34018226	34018465	ENSG00000184984.9|CHRM5|pc|chr15:34018226:34018465:+	0	+
#Deleted in new
chr15	34046539	34046871	ENSG00000184984.9|CHRM5|pc|chr15:34046539:34046871:+	0	+
#Partially deleted in new
chr15	34102072	34108684	ENSG00000182405.5|PGBD4|pc|chr15:34102072:34108684:+	0	+
#Partially deleted in new
chr15	34142668	34143024	ENSG00000134152.10|KATNBL1|pc|chr15:34142668:34143024:-	0	-
#Deleted in new
chr15	34144963	34145252	ENSG00000134152.10|KATNBL1|pc|chr15:34144963:34145252:-	0	-
#Deleted in new
chr15	34154785	34154831	ENSG00000134152.10|KATNBL1|pc|chr15:34154785:34154831:-	0	-
#Deleted in new
chr15	34165929	34166115	ENSG00000134152.10|KATNBL1|pc|chr15:34165929:34166115:-	0	-
#Deleted in new
chr15	34199578	34199840	ENSG00000134152.10|KATNBL1|pc|chr15:34199578:34199840:-	0	-
#Partially deleted in new
chr15	34225535	34226554	ENSG00000128463.12|EMC4|pc|chr15:34225535:34226554:+	0	+
#Partially deleted in new
chr15	34226511	34227824	ENSG00000128463.12|EMC4|pc|chr15:34226511:34227824:+	0	+
#Deleted in new
chr15	34228965	34229182	ENSG00000128463.12|EMC4|pc|chr15:34228965:34229182:+	0	+
#Deleted in new
chr15	34299568	34299636	ENSG00000140199.11|SLC12A6|pc|chr15:34299568:34299636:-	0	-
#Deleted in new
chr15	34299568	34299658	ENSG00000140199.11|SLC12A6|pc|chr15:34299568:34299658:-	0	-
#Partially deleted in new
chr15	34360911	34361532	ENSG00000176454.13|LPCAT4|pc|chr15:34360911:34361532:-	0	-
#Deleted in new
chr15	34391122	34391265	ENSG00000175265.17|GOLGA8A|pc|chr15:34391122:34391265:-	0	-
#Deleted in new
chr15	34391352	34391426	ENSG00000175265.17|GOLGA8A|pc|chr15:34391352:34391426:-	0	-
#Deleted in new
chr15	34400711	34400759	ENSG00000175265.17|GOLGA8A|pc|chr15:34400711:34400759:-	0	-
#Deleted in new
chr15	34406673	34406870	ENSG00000175265.17|GOLGA8A|pc|chr15:34406673:34406870:-	0	-
#Deleted in new
chr15	34406676	34406870	ENSG00000175265.17|GOLGA8A|pc|chr15:34406676:34406870:-	0	-
#Deleted in new
chr15	34407523	34407687	ENSG00000175265.17|GOLGA8A|pc|chr15:34407523:34407687:-	0	-
#Deleted in new
chr15	34407523	34407735	ENSG00000175265.17|GOLGA8A|pc|chr15:34407523:34407735:-	0	-
#Deleted in new
chr15	34407575	34407735	ENSG00000175265.17|GOLGA8A|pc|chr15:34407575:34407735:-	0	-
#Partially deleted in new
chr15	34415449	34420273	ENSG00000279092.1|AC025678.3|lncRNA|chr15:34415449:34420273:-	0	-
#Deleted in new
chr15	34537343	34537647	ENSG00000215252.11|GOLGA8B|pc|chr15:34537343:34537647:-	0	-
#Deleted in new
chr15	34546934	34546982	ENSG00000215252.11|GOLGA8B|pc|chr15:34546934:34546982:-	0	-
#Deleted in new
chr15	34552267	34552398	ENSG00000215252.11|GOLGA8B|pc|chr15:34552267:34552398:-	0	-
#Deleted in new
chr15	34552894	34553091	ENSG00000215252.11|GOLGA8B|pc|chr15:34552894:34553091:-	0	-
#Deleted in new
chr15	34552906	34553091	ENSG00000215252.11|GOLGA8B|pc|chr15:34552906:34553091:-	0	-
#Deleted in new
chr15	34552972	34553091	ENSG00000215252.11|GOLGA8B|pc|chr15:34552972:34553091:-	0	-
#Deleted in new
chr15	34553744	34553956	ENSG00000215252.11|GOLGA8B|pc|chr15:34553744:34553956:-	0	-
#Deleted in new
chr15	34588390	34588503	ENSG00000215252.11|GOLGA8B|pc|chr15:34588390:34588503:-	0	-
#Deleted in new
chr15	34651134	34651262	ENSG00000261304.1|LINC02252|lncRNA|chr15:34651134:34651262:-	0	-
#Deleted in new
chr15	34651683	34651776	ENSG00000261304.1|LINC02252|lncRNA|chr15:34651683:34651776:-	0	-
#Deleted in new
chr15	34655618	34655764	ENSG00000261304.1|LINC02252|lncRNA|chr15:34655618:34655764:-	0	-
#Partially deleted in new
chr15	34777270	34777431	ENSG00000250007.6|AC087457.1|lncRNA|chr15:34777270:34777431:+	0	+
#Partially deleted in new
chr15	34810495	34812923	ENSG00000250007.6|AC087457.1|lncRNA|chr15:34810495:34812923:+	0	+
#Deleted in new
chr15	34993645	34994022	ENSG00000259181.1|AC114546.1|lncRNA|chr15:34993645:34994022:+	0	+
#Deleted in new
chr15	34999901	35000270	ENSG00000280396.1|AC114546.4|lncRNA|chr15:34999901:35000270:+	0	+
#Deleted in new
chr15	35003125	35003221	ENSG00000259181.1|AC114546.1|lncRNA|chr15:35003125:35003221:+	0	+
#Deleted in new
chr15	35856476	35856530	ENSG00000248079.2|DPH6-AS1|lncRNA|chr15:35856476:35856530:+	0	+
#Deleted in new
chr15	35965027	35965071	ENSG00000259639.5|AC021351.1|lncRNA|chr15:35965027:35965071:-	0	-
#Deleted in new
chr15	36033192	36033255	ENSG00000259639.5|AC021351.1|lncRNA|chr15:36033192:36033255:-	0	-
#Deleted in new
chr15	36215691	36215761	ENSG00000259639.5|AC021351.1|lncRNA|chr15:36215691:36215761:-	0	-
#Deleted in new
chr15	36252191	36252257	ENSG00000259639.5|AC021351.1|lncRNA|chr15:36252191:36252257:-	0	-
#Deleted in new
chr15	36341738	36344166	ENSG00000259395.1|AC087516.1|lncRNA|chr15:36341738:36344166:+	0	+
#Deleted in new
chr15	36443536	36443833	ENSG00000259737.6|AC087516.2|lncRNA|chr15:36443536:36443833:-	0	-
#Deleted in new
chr15	36444193	36444292	ENSG00000259737.6|AC087516.2|lncRNA|chr15:36444193:36444292:-	0	-
#Deleted in new
chr15	36444193	36444512	ENSG00000259737.6|AC087516.2|lncRNA|chr15:36444193:36444512:-	0	-
#Deleted in new
chr15	36470848	36471016	ENSG00000259737.6|AC087516.2|lncRNA|chr15:36470848:36471016:-	0	-
#Deleted in new
chr15	36640604	36640659	ENSG00000186073.11|C15orf41|pc|chr15:36640604:36640659:+	0	+
#Deleted in new
chr15	36641185	36641504	ENSG00000261191.1|AC013640.1|lncRNA|chr15:36641185:36641504:-	0	-
#Deleted in new
chr15	36641835	36641960	ENSG00000261191.1|AC013640.1|lncRNA|chr15:36641835:36641960:-	0	-
#Deleted in new
chr15	36648617	36648757	ENSG00000186073.11|C15orf41|pc|chr15:36648617:36648757:+	0	+
#Deleted in new
chr15	36668976	36669097	ENSG00000261191.1|AC013640.1|lncRNA|chr15:36668976:36669097:-	0	-
#Deleted in new
chr15	36696406	36696510	ENSG00000186073.11|C15orf41|pc|chr15:36696406:36696510:+	0	+
#Deleted in new
chr15	36746934	36747256	ENSG00000186073.11|C15orf41|pc|chr15:36746934:36747256:+	0	+
#Deleted in new
chr15	36876378	36876456	ENSG00000259280.1|AC018563.1|lncRNA|chr15:36876378:36876456:-	0	-
#Partially deleted in new
chr15	37366983	37367102	ENSG00000259434.1|AC068875.1|lncRNA|chr15:37366983:37367102:-	0	-
#Deleted in new
chr15	37921938	37922203	ENSG00000166069.13|TMCO5A|pc|chr15:37921938:37922203:+	0	+
#Deleted in new
chr15	37966624	37967724	ENSG00000166069.13|TMCO5A|pc|chr15:37966624:37967724:+	0	+
#Deleted in new
chr15	37984765	37984835	ENSG00000259225.6|LINC02345|lncRNA|chr15:37984765:37984835:+	0	+
#Deleted in new
chr15	37993401	37993486	ENSG00000259225.6|LINC02345|lncRNA|chr15:37993401:37993486:+	0	+
#Deleted in new
chr15	37993408	37993486	ENSG00000259225.6|LINC02345|lncRNA|chr15:37993408:37993486:+	0	+
#Deleted in new
chr15	38004745	38004832	ENSG00000259225.6|LINC02345|lncRNA|chr15:38004745:38004832:+	0	+
#Deleted in new
chr15	38020191	38020532	ENSG00000259225.6|LINC02345|lncRNA|chr15:38020191:38020532:+	0	+
#Deleted in new
chr15	38024680	38025018	ENSG00000259225.6|LINC02345|lncRNA|chr15:38024680:38025018:+	0	+
#Deleted in new
chr15	38071829	38071902	ENSG00000236914.3|LINC01852|lncRNA|chr15:38071829:38071902:-	0	-
#Deleted in new
chr15	38139594	38141748	ENSG00000259380.5|AC087473.1|lncRNA|chr15:38139594:38141748:-	0	-
#Deleted in new
chr15	38142259	38142843	ENSG00000259380.5|AC087473.1|lncRNA|chr15:38142259:38142843:-	0	-
#Deleted in new
chr15	38142748	38142843	ENSG00000259380.5|AC087473.1|lncRNA|chr15:38142748:38142843:-	0	-
#Deleted in new
chr15	38268173	38268237	ENSG00000166068.12|SPRED1|pc|chr15:38268173:38268237:+	0	+
#Deleted in new
chr15	38325947	38326363	ENSG00000166068.12|SPRED1|pc|chr15:38325947:38326363:+	0	+
#Partially deleted in new
chr15	38502852	38504981	ENSG00000259326.1|AC116158.1|lncRNA|chr15:38502852:38504981:+	0	+
#Partially deleted in new
chr1	53851718	53852270	ENSG00000058799.14|YIPF1|pc|chr1:53851718:53852270:-	0	-
#Partially deleted in new
chr1	53851732	53852270	ENSG00000058799.14|YIPF1|pc|chr1:53851732:53852270:-	0	-
#Deleted in new
chr15	38524069	38524444	ENSG00000259598.1|AC116158.2|lncRNA|chr15:38524069:38524444:+	0	+
#Deleted in new
chr15	38534187	38534293	ENSG00000259598.1|AC116158.2|lncRNA|chr15:38534187:38534293:+	0	+
#Deleted in new
chr15	38534583	38534655	ENSG00000259598.1|AC116158.2|lncRNA|chr15:38534583:38534655:+	0	+
#Deleted in new
chr1	53855000	53855051	ENSG00000058799.14|YIPF1|pc|chr1:53855000:53855051:-	0	-
#Deleted in new
chr15	38676393	38676454	ENSG00000259747.1|AC104261.1|lncRNA|chr15:38676393:38676454:+	0	+
#Deleted in new
chr15	38677786	38678008	ENSG00000259747.1|AC104261.1|lncRNA|chr15:38677786:38678008:+	0	+
#Deleted in new
chr15	38688893	38689191	ENSG00000259747.1|AC104261.1|lncRNA|chr15:38688893:38689191:+	0	+
#Deleted in new
chr15	38756551	38756764	ENSG00000259731.2|AC022929.1|lncRNA|chr15:38756551:38756764:-	0	-
#Deleted in new
chr15	38756893	38756946	ENSG00000259731.2|AC022929.1|lncRNA|chr15:38756893:38756946:-	0	-
#Partially deleted in new
chr15	38851305	38853432	ENSG00000274281.1|AC022929.2|lncRNA|chr15:38851305:38853432:-	0	-
#Partially deleted in new
chr15	38867969	38868184	ENSG00000259345.5|AC013652.1|lncRNA|chr15:38867969:38868184:-	0	-
#Deleted in new
chr15	38886633	38886929	ENSG00000259345.5|AC013652.1|lncRNA|chr15:38886633:38886929:-	0	-
#Deleted in new
chr15	38886696	38886929	ENSG00000259345.5|AC013652.1|lncRNA|chr15:38886696:38886929:-	0	-
#Deleted in new
chr15	38886829	38886929	ENSG00000259345.5|AC013652.1|lncRNA|chr15:38886829:38886929:-	0	-
#Deleted in new
chr1	53891238	53891294	ENSG00000211452.10|DIO1|pc|chr1:53891238:53891294:+	0	+
#Deleted in new
chr1	53892166	53892276	ENSG00000211452.10|DIO1|pc|chr1:53892166:53892276:+	0	+
#Deleted in new
chr15	39018501	39018581	ENSG00000259345.5|AC013652.1|lncRNA|chr15:39018501:39018581:-	0	-
#Deleted in new
chr15	39019232	39019324	ENSG00000259278.1|AC087878.1|lncRNA|chr15:39019232:39019324:+	0	+
#Deleted in new
chr15	39118649	39118713	ENSG00000259345.5|AC013652.1|lncRNA|chr15:39118649:39118713:-	0	-
#Deleted in new
chr15	39168735	39168842	ENSG00000259423.2|AC113146.1|lncRNA|chr15:39168735:39168842:+	0	+
#Deleted in new
chr15	39169506	39169807	ENSG00000259423.2|AC113146.1|lncRNA|chr15:39169506:39169807:+	0	+
#Deleted in new
chr15	39359788	39360141	ENSG00000259345.5|AC013652.1|lncRNA|chr15:39359788:39360141:-	0	-
#Deleted in new
chr15	39419029	39419652	ENSG00000259345.5|AC013652.1|lncRNA|chr15:39419029:39419652:-	0	-
#Deleted in new
chr15	39420543	39420709	ENSG00000259345.5|AC013652.1|lncRNA|chr15:39420543:39420709:-	0	-
#Deleted in new
chr15	39420543	39420951	ENSG00000259345.5|AC013652.1|lncRNA|chr15:39420543:39420951:-	0	-
#Deleted in new
chr15	39420908	39420975	ENSG00000259345.5|AC013652.1|lncRNA|chr15:39420908:39420975:-	0	-
#Partially deleted in new
chr1	53945554	53945602	ENSG00000081870.11|HSPB11|pc|chr1:53945554:53945602:-	0	-
#Partially deleted in new
chr1	53945554	53945610	ENSG00000081870.11|HSPB11|pc|chr1:53945554:53945610:-	0	-
#Deleted in new
chr15	39480967	39481206	ENSG00000259269.1|AC109630.1|lncRNA|chr15:39480967:39481206:+	0	+
#Deleted in new
chr15	39747301	39747447	ENSG00000150667.6|FSIP1|pc|chr15:39747301:39747447:-	0	-
#Deleted in new
chr15	39813222	39813626	ENSG00000259432.1|AC023908.1|lncRNA|chr15:39813222:39813626:-	0	-
#Deleted in new
chr15	39814896	39814947	ENSG00000259432.1|AC023908.1|lncRNA|chr15:39814896:39814947:-	0	-
#Deleted in new
chr15	39815317	39815429	ENSG00000259432.1|AC023908.1|lncRNA|chr15:39815317:39815429:-	0	-
#Deleted in new
chr15	39894455	39894527	ENSG00000166073.10|GPR176|pc|chr15:39894455:39894527:-	0	-
#Partially deleted in new
chr15	39921069	39925880	ENSG00000246863.2|AC012377.1|lncRNA|chr15:39921069:39925880:+	0	+
#Deleted in new
chr15	39922786	39924899	ENSG00000246863.2|AC012377.1|lncRNA|chr15:39922786:39924899:+	0	+
#Deleted in new
chr15	39946588	39946895	ENSG00000128829.11|EIF2AK4|pc|chr15:39946588:39946895:+	0	+
#Deleted in new
chr15	40002390	40002510	ENSG00000128829.11|EIF2AK4|pc|chr15:40002390:40002510:+	0	+
#Deleted in new
chr15	40056729	40057000	ENSG00000248508.6|SRP14-AS1|lncRNA|chr15:40056729:40057000:+	0	+
#Deleted in new
chr15	40064386	40064601	ENSG00000248508.6|SRP14-AS1|lncRNA|chr15:40064386:40064601:+	0	+
#Deleted in new
chr15	40065220	40065705	ENSG00000248508.6|SRP14-AS1|lncRNA|chr15:40065220:40065705:+	0	+
#Deleted in new
chr15	40065220	40067290	ENSG00000248508.6|SRP14-AS1|lncRNA|chr15:40065220:40067290:+	0	+
#Deleted in new
chr15	40078657	40078704	ENSG00000259584.1|AC021755.3|lncRNA|chr15:40078657:40078704:-	0	-
#Partially deleted in new
chr15	40078891	40079347	ENSG00000275636.1|AC021755.4|lncRNA|chr15:40078891:40079347:+	0	+
#Deleted in new
chr15	40166358	40166482	ENSG00000156970.12|BUB1B|pc|chr15:40166358:40166482:+	0	+
#Deleted in new
chr15	40186928	40187054	ENSG00000156970.12|BUB1B|pc|chr15:40186928:40187054:+	0	+
#Partially deleted in new
chr15	40263798	40263919	ENSG00000137843.11|PAK6|pc|chr15:40263798:40263919:+	0	+
#Partially deleted in new
chr15	40263803	40263919	ENSG00000137843.11|PAK6|pc|chr15:40263803:40263919:+	0	+
#Partially deleted in new
chr15	40312614	40316634	ENSG00000259198.1|AC020658.2|lncRNA|chr15:40312614:40316634:+	0	+
#Deleted in new
chr1	54033125	54034880	ENSG00000280378.1|AL353898.3|lncRNA|chr1:54033125:54034880:-	0	-
#Deleted in new
chr15	40384456	40384519	ENSG00000128944.13|KNSTRN|pc|chr15:40384456:40384519:+	0	+
#Deleted in new
chr15	40389165	40389291	ENSG00000128944.13|KNSTRN|pc|chr15:40389165:40389291:+	0	+
#Deleted in new
chr15	40419179	40419373	ENSG00000128928.8|IVD|pc|chr15:40419179:40419373:+	0	+
#Partially deleted in new
chr15	40424134	40424473	ENSG00000128928.8|IVD|pc|chr15:40424134:40424473:+	0	+
#Deleted in new
chr15	40453827	40453945	ENSG00000259364.1|AC013356.3|lncRNA|chr15:40453827:40453945:-	0	-
#Deleted in new
chr15	40488040	40488207	ENSG00000259536.5|AC091045.1|lncRNA|chr15:40488040:40488207:+	0	+
#Deleted in new
chr15	40508023	40508067	ENSG00000259536.5|AC091045.1|lncRNA|chr15:40508023:40508067:+	0	+
#Partially deleted in new
chr15	40508331	40508444	ENSG00000259536.5|AC091045.1|lncRNA|chr15:40508331:40508444:+	0	+
#Deleted in new
chr15	40528682	40528790	ENSG00000128891.15|CCDC32|pc|chr15:40528682:40528790:-	0	-
#Partially deleted in new
chr15	40556620	40557372	ENSG00000128891.15|CCDC32|pc|chr15:40556620:40557372:-	0	-
#Partially deleted in new
chr15	40561980	40562007	ENSG00000128891.15|CCDC32|pc|chr15:40561980:40562007:-	0	-
#Deleted in new
chr15	40610798	40610876	ENSG00000137812.19|KNL1|pc|chr15:40610798:40610876:+	0	+
#Deleted in new
chr15	40611477	40611511	ENSG00000137812.19|KNL1|pc|chr15:40611477:40611511:+	0	+
#Deleted in new
chr15	40611483	40611511	ENSG00000137812.19|KNL1|pc|chr15:40611483:40611511:+	0	+
#Deleted in new
chr15	40615340	40615378	ENSG00000137812.19|KNL1|pc|chr15:40615340:40615378:+	0	+
#Deleted in new
chr15	40642932	40643306	ENSG00000259254.1|AC022405.1|lncRNA|chr15:40642932:40643306:+	0	+
#Deleted in new
chr15	40686723	40687146	ENSG00000245849.6|RAD51-AS1|lncRNA|chr15:40686723:40687146:-	0	-
#Deleted in new
chr15	40687722	40687844	ENSG00000245849.6|RAD51-AS1|lncRNA|chr15:40687722:40687844:-	0	-
#Partially deleted in new
chr15	40693740	40694795	ENSG00000245849.6|RAD51-AS1|lncRNA|chr15:40693740:40694795:-	0	-
#Deleted in new
chr15	40701805	40701926	ENSG00000051180.16|RAD51|pc|chr15:40701805:40701926:+	0	+
#Deleted in new
chr15	40764425	40764608	ENSG00000137880.5|GCHFR|pc|chr15:40764425:40764608:+	0	+
#Deleted in new
chr15	40817231	40817347	ENSG00000166143.9|PPP1R14D|pc|chr15:40817231:40817347:-	0	-
#Deleted in new
chr15	40835807	40836282	ENSG00000261183.5|SPINT1-AS1|lncRNA|chr15:40835807:40836282:-	0	-
#Deleted in new
chr15	40835992	40836282	ENSG00000261183.5|SPINT1-AS1|lncRNA|chr15:40835992:40836282:-	0	-
#Deleted in new
chr15	40835996	40836282	ENSG00000261183.5|SPINT1-AS1|lncRNA|chr15:40835996:40836282:-	0	-
#Deleted in new
chr15	40838032	40838125	ENSG00000261183.5|SPINT1-AS1|lncRNA|chr15:40838032:40838125:-	0	-
#Deleted in new
chr15	40838338	40838686	ENSG00000261183.5|SPINT1-AS1|lncRNA|chr15:40838338:40838686:-	0	-
#Deleted in new
chr15	40838542	40838686	ENSG00000261183.5|SPINT1-AS1|lncRNA|chr15:40838542:40838686:-	0	-
#Deleted in new
chr15	40838550	40838686	ENSG00000261183.5|SPINT1-AS1|lncRNA|chr15:40838550:40838686:-	0	-
#Deleted in new
chr15	40840379	40840493	ENSG00000261183.5|SPINT1-AS1|lncRNA|chr15:40840379:40840493:-	0	-
#Deleted in new
chr15	40898657	40898811	ENSG00000104142.10|VPS18|pc|chr15:40898657:40898811:+	0	+
#Partially deleted in new
chr1	54096284	54106082	ENSG00000116205.12|TCEANC2|pc|chr1:54096284:54106082:+	0	+
#Deleted in new
chr15	41005277	41005357	ENSG00000128908.15|INO80|pc|chr15:41005277:41005357:-	0	-
#Deleted in new
chr15	41011596	41011736	ENSG00000259463.1|AC020661.3|lncRNA|chr15:41011596:41011736:+	0	+
#Deleted in new
chr15	41013026	41013300	ENSG00000259463.1|AC020661.3|lncRNA|chr15:41013026:41013300:+	0	+
#Deleted in new
chr15	41016806	41016835	ENSG00000259521.1|INO80-AS1|lncRNA|chr15:41016806:41016835:+	0	+
#Deleted in new
chr1	54104294	54106077	ENSG00000116205.12|TCEANC2|pc|chr1:54104294:54106077:+	0	+
#Deleted in new
chr15	41219458	41219634	ENSG00000178997.11|EXD1|pc|chr15:41219458:41219634:-	0	-
#Deleted in new
chr15	41234138	41234234	ENSG00000187446.11|CHP1|pc|chr15:41234138:41234234:+	0	+
#Deleted in new
chr15	41264164	41264235	ENSG00000187446.11|CHP1|pc|chr15:41264164:41264235:+	0	+
#Deleted in new
chr15	41272179	41272375	ENSG00000187446.11|CHP1|pc|chr15:41272179:41272375:+	0	+
#Partially deleted in new
chr15	41285224	41285689	ENSG00000247556.6|OIP5-AS1|lncRNA|chr15:41285224:41285689:+	0	+
#Deleted in new
chr15	41287352	41287474	ENSG00000247556.6|OIP5-AS1|lncRNA|chr15:41287352:41287474:+	0	+
#Deleted in new
chr15	41287961	41288271	ENSG00000247556.6|OIP5-AS1|lncRNA|chr15:41287961:41288271:+	0	+
#Deleted in new
chr15	41287982	41289155	ENSG00000247556.6|OIP5-AS1|lncRNA|chr15:41287982:41289155:+	0	+
#Deleted in new
chr15	41290304	41290416	ENSG00000247556.6|OIP5-AS1|lncRNA|chr15:41290304:41290416:+	0	+
#Deleted in new
chr15	41296803	41297290	ENSG00000247556.6|OIP5-AS1|lncRNA|chr15:41296803:41297290:+	0	+
#Deleted in new
chr15	41308566	41308624	ENSG00000247556.6|OIP5-AS1|lncRNA|chr15:41308566:41308624:+	0	+
#Partially deleted in new
chr15	41308719	41309737	ENSG00000247556.6|OIP5-AS1|lncRNA|chr15:41308719:41309737:+	0	+
#Deleted in new
chr15	41343079	41343450	ENSG00000259396.1|AC087721.1|lncRNA|chr15:41343079:41343450:+	0	+
#Deleted in new
chr15	41344120	41344225	ENSG00000259396.1|AC087721.1|lncRNA|chr15:41344120:41344225:+	0	+
#Deleted in new
chr15	41345485	41345602	ENSG00000137804.12|NUSAP1|pc|chr15:41345485:41345602:+	0	+
#Deleted in new
chr15	41351963	41351986	ENSG00000137804.12|NUSAP1|pc|chr15:41351963:41351986:+	0	+
#Deleted in new
chr15	41365746	41365863	ENSG00000137804.12|NUSAP1|pc|chr15:41365746:41365863:+	0	+
#Deleted in new
chr15	41365815	41365863	ENSG00000137804.12|NUSAP1|pc|chr15:41365815:41365863:+	0	+
#Deleted in new
chr15	41394104	41394358	ENSG00000137806.8|NDUFAF1|pc|chr15:41394104:41394358:-	0	-
#Deleted in new
chr15	41408407	41408581	ENSG00000137815.14|RTF1|pc|chr15:41408407:41408581:+	0	+
#Deleted in new
chr15	41440235	41440333	ENSG00000137815.14|RTF1|pc|chr15:41440235:41440333:+	0	+
#Deleted in new
chr15	41533345	41533394	ENSG00000103932.11|RPAP1|pc|chr15:41533345:41533394:-	0	-
#Deleted in new
chr15	41609465	41609916	ENSG00000260926.2|AC016134.1|lncRNA|chr15:41609465:41609916:-	0	-
#Deleted in new
chr15	41609543	41609924	ENSG00000260926.2|AC016134.1|lncRNA|chr15:41609543:41609924:-	0	-
#Deleted in new
chr15	41610143	41610200	ENSG00000260926.2|AC016134.1|lncRNA|chr15:41610143:41610200:-	0	-
#Deleted in new
chr15	41612534	41612727	ENSG00000260926.2|AC016134.1|lncRNA|chr15:41612534:41612727:-	0	-
#Deleted in new
chr15	41684393	41684690	ENSG00000174197.16|MGA|pc|chr15:41684393:41684690:+	0	+
#Deleted in new
chr1	54175544	54175660	ENSG00000215883.10|CYB5RL|pc|chr1:54175544:54175660:-	0	-
#Deleted in new
chr15	41772430	41772732	ENSG00000260814.2|AC073657.1|lncRNA|chr15:41772430:41772732:-	0	-
#Partially deleted in new
chr15	41772508	41772986	ENSG00000174197.16|MGA|pc|chr15:41772508:41772986:+	0	+
#Deleted in new
chr15	41772514	41772622	ENSG00000260814.2|AC073657.1|lncRNA|chr15:41772514:41772622:-	0	-
#Deleted in new
chr1	54179983	54180233	ENSG00000215883.10|CYB5RL|pc|chr1:54179983:54180233:-	0	-
#Partially deleted in new
chr15	41828393	41828501	ENSG00000243789.10|JMJD7|pc|chr15:41828393:41828501:+	0	+
#Deleted in new
chr15	41829103	41829292	ENSG00000243789.10|JMJD7|pc|chr15:41829103:41829292:+	0	+
#Deleted in new
chr15	41832428	41832512	ENSG00000243789.10|JMJD7|pc|chr15:41832428:41832512:+	0	+
#Partially deleted in new
chr15	41837774	41837959	ENSG00000243708.10|PLA2G4B|pc|chr15:41837774:41837959:+	0	+
#Split in new
chr15	41894984	41895943	ENSG00000174171.5|AC020659.1|lncRNA|chr15:41894984:41895943:+	0	+
#Deleted in new
chr15	41895184	41895336	ENSG00000174171.5|AC020659.1|lncRNA|chr15:41895184:41895336:+	0	+
#Partially deleted in new
chr15	41895583	41895669	ENSG00000174171.5|AC020659.1|lncRNA|chr15:41895583:41895669:+	0	+
#Deleted in new
chr15	41897328	41897391	ENSG00000174171.5|AC020659.1|lncRNA|chr15:41897328:41897391:+	0	+
#Deleted in new
chr15	41897491	41897521	ENSG00000174171.5|AC020659.1|lncRNA|chr15:41897491:41897521:+	0	+
#Deleted in new
chr15	41926080	41926167	ENSG00000259883.1|EHD4-AS1|lncRNA|chr15:41926080:41926167:+	0	+
#Deleted in new
chr1	54196368	54196404	ENSG00000215883.10|CYB5RL|pc|chr1:54196368:54196404:-	0	-
#Deleted in new
chr1	54196368	54196433	ENSG00000256407.2|AL357673.1|pc|chr1:54196368:54196433:-	0	-
#Deleted in new
chr1	54196368	54196491	ENSG00000215883.10|CYB5RL|pc|chr1:54196368:54196491:-	0	-
#Deleted in new
chr1	54196368	54196491	ENSG00000256407.2|AL357673.1|pc|chr1:54196368:54196491:-	0	-
#Deleted in new
chr15	41973803	41973958	ENSG00000246740.2|PLA2G4E-AS1|lncRNA|chr15:41973803:41973958:+	0	+
#Deleted in new
chr1	54220610	54220930	ENSG00000116221.15|MRPL37|pc|chr1:54220610:54220930:+	0	+
#Deleted in new
chr15	42208412	42208684	ENSG00000261002.5|AC036103.1|lncRNA|chr15:42208412:42208684:+	0	+
#Deleted in new
chr15	42208618	42208684	ENSG00000261002.5|AC036103.1|lncRNA|chr15:42208618:42208684:+	0	+
#Deleted in new
chr15	42208763	42208917	ENSG00000261002.5|AC036103.1|lncRNA|chr15:42208763:42208917:+	0	+
#Deleted in new
chr15	42218918	42218953	ENSG00000261002.5|AC036103.1|lncRNA|chr15:42218918:42218953:+	0	+
#Deleted in new
chr15	42224407	42224558	ENSG00000261002.5|AC036103.1|lncRNA|chr15:42224407:42224558:+	0	+
#Partially deleted in new
chr1	54225124	54225464	ENSG00000116221.15|MRPL37|pc|chr1:54225124:54225464:+	0	+
#Deleted in new
chr15	42257934	42258990	ENSG00000103978.15|TMEM87A|pc|chr15:42257934:42258990:-	0	-
#Deleted in new
chr15	42258790	42258990	ENSG00000103978.15|TMEM87A|pc|chr15:42258790:42258990:-	0	-
#Deleted in new
chr15	42344694	42344911	ENSG00000214013.9|GANC|pc|chr15:42344694:42344911:+	0	+
#Partially deleted in new
chr15	42352029	42356935	ENSG00000214013.9|GANC|pc|chr15:42352029:42356935:+	0	+
#Deleted in new
chr15	42354339	42354453	ENSG00000258461.5|AC012651.1|pc|chr15:42354339:42354453:+	0	+
#Deleted in new
chr15	42415294	42415476	ENSG00000103994.16|ZNF106|pc|chr15:42415294:42415476:-	0	-
#Partially deleted in new
chr15	42425471	42425781	ENSG00000103994.16|ZNF106|pc|chr15:42425471:42425781:-	0	-
#Deleted in new
chr15	42505121	42505688	ENSG00000092531.9|SNAP23|pc|chr15:42505121:42505688:+	0	+
#Partially deleted in new
chr15	42511832	42512364	ENSG00000092531.9|SNAP23|pc|chr15:42511832:42512364:+	0	+
#Partially deleted in new
chr15	42537819	42544124	ENSG00000180979.9|LRRC57|pc|chr15:42537819:42544124:-	0	-
#Deleted in new
chr15	42560781	42560870	ENSG00000137814.10|HAUS2|pc|chr15:42560781:42560870:+	0	+
#Partially deleted in new
chr15	42566606	42567858	ENSG00000137814.10|HAUS2|pc|chr15:42566606:42567858:+	0	+
#Partially deleted in new
chr15	42566606	42568930	ENSG00000137814.10|HAUS2|pc|chr15:42566606:42568930:+	0	+
#Partially deleted in new
chr15	42566606	42569994	ENSG00000137814.10|HAUS2|pc|chr15:42566606:42569994:+	0	+
#Deleted in new
chr15	42567030	42567139	ENSG00000261822.1|AC018362.2|lncRNA|chr15:42567030:42567139:-	0	-
#Deleted in new
chr15	42569297	42569465	ENSG00000261822.1|AC018362.2|lncRNA|chr15:42569297:42569465:-	0	-
#Deleted in new
chr15	42629841	42630146	ENSG00000159433.11|STARD9|pc|chr15:42629841:42630146:+	0	+
#Partially deleted in new
chr15	42669157	42673114	ENSG00000159433.11|STARD9|pc|chr15:42669157:42673114:+	0	+
#Deleted in new
chr15	42798251	42798270	ENSG00000128881.16|TTBK2|pc|chr15:42798251:42798270:-	0	-
#Deleted in new
chr1	54285404	54285482	ENSG00000225632.1|AL161644.1|lncRNA|chr1:54285404:54285482:+	0	+
#Deleted in new
chr15	42855118	42855200	ENSG00000128881.16|TTBK2|pc|chr15:42855118:42855200:-	0	-
#Deleted in new
chr15	42857394	42857516	ENSG00000128881.16|TTBK2|pc|chr15:42857394:42857516:-	0	-
#Partially deleted in new
chr1	54286338	54287371	ENSG00000225632.1|AL161644.1|lncRNA|chr1:54286338:54287371:+	0	+
#Deleted in new
chr15	42908215	42908275	ENSG00000128881.16|TTBK2|pc|chr15:42908215:42908275:-	0	-
#Deleted in new
chr15	43091960	43092080	ENSG00000159459.11|UBR1|pc|chr15:43091960:43092080:-	0	-
#Deleted in new
chr15	43091972	43092080	ENSG00000159459.11|UBR1|pc|chr15:43091972:43092080:-	0	-
#Deleted in new
chr15	43106224	43106295	ENSG00000166947.11|EPB42|pc|chr15:43106224:43106295:-	0	-
#Deleted in new
chr15	43106467	43106537	ENSG00000166947.11|EPB42|pc|chr15:43106467:43106537:-	0	-
#Deleted in new
chr15	43108918	43108970	ENSG00000166947.11|EPB42|pc|chr15:43108918:43108970:-	0	-
#Deleted in new
chr15	43123278	43123362	ENSG00000137842.6|TMEM62|pc|chr15:43123278:43123362:+	0	+
#Deleted in new
chr15	43169014	43169153	ENSG00000137842.6|TMEM62|pc|chr15:43169014:43169153:+	0	+
#Deleted in new
chr15	43179792	43179938	ENSG00000166947.11|EPB42|pc|chr15:43179792:43179938:-	0	-
#Deleted in new
chr15	43179844	43179938	ENSG00000166947.11|EPB42|pc|chr15:43179844:43179938:-	0	-
#Deleted in new
chr15	43331899	43332000	ENSG00000168803.14|ADAL|pc|chr15:43331899:43332000:+	0	+
#Deleted in new
chr15	43331899	43332383	ENSG00000168803.14|ADAL|pc|chr15:43331899:43332383:+	0	+
#Deleted in new
chr15	43331974	43332000	ENSG00000168803.14|ADAL|pc|chr15:43331974:43332000:+	0	+
#Deleted in new
chr15	43333310	43333434	ENSG00000168803.14|ADAL|pc|chr15:43333310:43333434:+	0	+
#Deleted in new
chr15	43385367	43385508	ENSG00000137822.12|TUBGCP4|pc|chr15:43385367:43385508:+	0	+
#Deleted in new
chr15	43399111	43399174	ENSG00000137822.12|TUBGCP4|pc|chr15:43399111:43399174:+	0	+
#Deleted in new
chr15	43497437	43497538	ENSG00000067369.13|TP53BP1|pc|chr15:43497437:43497538:-	0	-
#Deleted in new
chr15	43548406	43548683	ENSG00000168781.21|PPIP5K1|pc|chr15:43548406:43548683:-	0	-
#Partially deleted in new
chr15	43628502	43630732	ENSG00000166762.16|CATSPER2|pc|chr15:43628502:43630732:-	0	-
#Partially deleted in new
chr15	43631429	43631538	ENSG00000166762.16|CATSPER2|pc|chr15:43631429:43631538:-	0	-
#Deleted in new
chr15	43632716	43632737	ENSG00000166762.16|CATSPER2|pc|chr15:43632716:43632737:-	0	-
#Deleted in new
chr15	43642388	43643023	ENSG00000275601.1|AC011330.2|lncRNA|chr15:43642388:43643023:-	0	-
#Deleted in new
chr15	43697196	43697217	ENSG00000223572.9|CKMT1A|pc|chr15:43697196:43697217:+	0	+
#Deleted in new
chr15	43751583	43751758	ENSG00000167004.12|PDIA3|pc|chr15:43751583:43751758:+	0	+
#Deleted in new
chr15	43752801	43752946	ENSG00000167004.12|PDIA3|pc|chr15:43752801:43752946:+	0	+
#Deleted in new
chr15	43777984	43778116	ENSG00000140264.19|SERF2|pc|chr15:43777984:43778116:+	0	+
#Deleted in new
chr15	43785409	43785534	ENSG00000140264.19|SERF2|pc|chr15:43785409:43785534:+	0	+
#Deleted in new
chr15	43917724	43917829	ENSG00000171877.20|FRMD5|pc|chr15:43917724:43917829:-	0	-
#Deleted in new
chr1	54412707	54412877	ENSG00000157216.15|SSBP3|pc|chr1:54412707:54412877:-	0	-
#Deleted in new
chr1	54413080	54413253	ENSG00000157216.15|SSBP3|pc|chr1:54413080:54413253:-	0	-
#Deleted in new
chr1	54413355	54413466	ENSG00000157216.15|SSBP3|pc|chr1:54413355:54413466:-	0	-
#Deleted in new
chr1	54413355	54413479	ENSG00000157216.15|SSBP3|pc|chr1:54413355:54413479:-	0	-
#Partially deleted in new
chr15	44307237	44308536	ENSG00000166734.18|CASC4|pc|chr15:44307237:44308536:+	0	+
#Deleted in new
chr15	44345874	44346149	ENSG00000166734.18|CASC4|pc|chr15:44345874:44346149:+	0	+
#Deleted in new
chr15	44348542	44348918	ENSG00000166734.18|CASC4|pc|chr15:44348542:44348918:+	0	+
#Deleted in new
chr15	44387319	44387488	ENSG00000259499.1|AC090519.2|lncRNA|chr15:44387319:44387488:-	0	-
#Deleted in new
chr15	44389965	44390451	ENSG00000259499.1|AC090519.2|lncRNA|chr15:44389965:44390451:-	0	-
#Deleted in new
chr15	44409518	44409847	ENSG00000166734.18|CASC4|pc|chr15:44409518:44409847:+	0	+
#Deleted in new
chr15	44470468	44470574	ENSG00000137770.13|CTDSPL2|pc|chr15:44470468:44470574:+	0	+
#Deleted in new
chr15	44516649	44516914	ENSG00000259563.1|AC025430.1|lncRNA|chr15:44516649:44516914:-	0	-
#Deleted in new
chr15	44517250	44517483	ENSG00000259563.1|AC025430.1|lncRNA|chr15:44517250:44517483:-	0	-
#Partially deleted in new
chr15	44519636	44521406	ENSG00000137770.13|CTDSPL2|pc|chr15:44519636:44521406:+	0	+
#Partially deleted in new
chr15	44533492	44535474	ENSG00000179523.4|EIF3J-AS1|lncRNA|chr15:44533492:44535474:-	0	-
#Partially deleted in new
chr15	44535759	44535943	ENSG00000179523.4|EIF3J-AS1|lncRNA|chr15:44535759:44535943:-	0	-
#Deleted in new
chr15	44557828	44558010	ENSG00000259659.1|AC009996.1|lncRNA|chr15:44557828:44558010:+	0	+
#Deleted in new
chr15	44558717	44559188	ENSG00000259659.1|AC009996.1|lncRNA|chr15:44558717:44559188:+	0	+
#Partially deleted in new
chr15	44560248	44560575	ENSG00000104131.12|EIF3J|pc|chr15:44560248:44560575:+	0	+
#Deleted in new
chr15	44572468	44572640	ENSG00000104133.14|SPG11|pc|chr15:44572468:44572640:-	0	-
#Deleted in new
chr15	44588566	44588638	ENSG00000104133.14|SPG11|pc|chr15:44588566:44588638:-	0	-
#Deleted in new
chr15	44590420	44590528	ENSG00000104133.14|SPG11|pc|chr15:44590420:44590528:-	0	-
#Deleted in new
chr15	44590420	44590937	ENSG00000104133.14|SPG11|pc|chr15:44590420:44590937:-	0	-
#Deleted in new
chr15	44604104	44604197	ENSG00000104133.14|SPG11|pc|chr15:44604104:44604197:-	0	-
#Deleted in new
chr15	44714506	44714548	ENSG00000166710.17|B2M|pc|chr15:44714506:44714548:+	0	+
#Partially deleted in new
chr15	44717606	44718067	ENSG00000166710.17|B2M|pc|chr15:44717606:44718067:+	0	+
#Partially deleted in new
chr15	44717606	44718144	ENSG00000166710.17|B2M|pc|chr15:44717606:44718144:+	0	+
#Partially deleted in new
chr15	44717606	44718159	ENSG00000166710.17|B2M|pc|chr15:44717606:44718159:+	0	+
#Partially deleted in new
chr15	44717606	44718877	ENSG00000166710.17|B2M|pc|chr15:44717606:44718877:+	0	+
#Deleted in new
chr15	44717843	44718145	ENSG00000166710.17|B2M|pc|chr15:44717843:44718145:+	0	+
#Deleted in new
chr15	44718757	44718851	ENSG00000166710.17|B2M|pc|chr15:44718757:44718851:+	0	+
#Split in new
chr15	44731362	44734000	ENSG00000185880.12|TRIM69|pc|chr15:44731362:44734000:+	0	+
#Deleted in new
chr15	44976080	44976173	ENSG00000167014.10|TERB2|pc|chr15:44976080:44976173:+	0	+
#Deleted in new
chr15	45036235	45036344	ENSG00000140263.13|SORD|pc|chr15:45036235:45036344:+	0	+
#Deleted in new
chr15	45042366	45042488	ENSG00000259418.1|AC091117.2|lncRNA|chr15:45042366:45042488:-	0	-
#Deleted in new
chr15	45050505	45050666	ENSG00000259418.1|AC091117.2|lncRNA|chr15:45050505:45050666:-	0	-
#Deleted in new
chr15	45058545	45058707	ENSG00000259418.1|AC091117.2|lncRNA|chr15:45058545:45058707:-	0	-
#Deleted in new
chr15	45155446	45155535	ENSG00000137857.17|DUOX1|pc|chr15:45155446:45155535:+	0	+
#Partially deleted in new
chr1	54516411	54517038	ENSG00000235741.1|AC099796.1|lncRNA|chr1:54516411:54517038:-	0	-
#Partially deleted in new
chr15	45167485	45167526	ENSG00000259539.1|AC051619.6|lncRNA|chr15:45167485:45167526:-	0	-
#Deleted in new
chr15	45199857	45199958	ENSG00000259519.1|AC051619.4|lncRNA|chr15:45199857:45199958:+	0	+
#Partially deleted in new
chr15	45200726	45201116	ENSG00000138606.19|SHF|pc|chr15:45200726:45201116:-	0	-
#Partially deleted in new
chr15	45200726	45201175	ENSG00000138606.19|SHF|pc|chr15:45200726:45201175:-	0	-
#Partially deleted in new
chr15	45214447	45215044	ENSG00000279014.1|AC051619.9|lncRNA|chr15:45214447:45215044:-	0	-
#Deleted in new
chr15	45251579	45252072	ENSG00000259520.5|AC051619.5|lncRNA|chr15:45251579:45252072:-	0	-
#Deleted in new
chr15	45252229	45252278	ENSG00000137860.11|SLC28A2|pc|chr15:45252229:45252278:+	0	+
#Deleted in new
chr15	45252233	45252278	ENSG00000137860.11|SLC28A2|pc|chr15:45252233:45252278:+	0	+
#Deleted in new
chr15	45255123	45255367	ENSG00000259520.5|AC051619.5|lncRNA|chr15:45255123:45255367:-	0	-
#Deleted in new
chr15	45255329	45255367	ENSG00000259520.5|AC051619.5|lncRNA|chr15:45255329:45255367:-	0	-
#Deleted in new
chr15	45255951	45255998	ENSG00000259520.5|AC051619.5|lncRNA|chr15:45255951:45255998:-	0	-
#Deleted in new
chr15	45255951	45256002	ENSG00000259520.5|AC051619.5|lncRNA|chr15:45255951:45256002:-	0	-
#Partially deleted in new
chr15	45275395	45277845	ENSG00000137860.11|SLC28A2|pc|chr15:45275395:45277845:+	0	+
#Deleted in new
chr15	45279196	45279227	ENSG00000259520.5|AC051619.5|lncRNA|chr15:45279196:45279227:-	0	-
#Deleted in new
chr15	45279196	45279251	ENSG00000259520.5|AC051619.5|lncRNA|chr15:45279196:45279251:-	0	-
#Deleted in new
chr15	45373235	45373331	ENSG00000171766.15|GATM|pc|chr15:45373235:45373331:-	0	-
#Partially deleted in new
chr15	45377996	45378075	ENSG00000171766.15|GATM|pc|chr15:45377996:45378075:-	0	-
#Partially deleted in new
chr15	45378699	45380123	ENSG00000275672.1|AC025580.3|lncRNA|chr15:45378699:45380123:+	0	+
#Deleted in new
chr15	45396166	45396253	ENSG00000171766.15|GATM|pc|chr15:45396166:45396253:-	0	-
#Deleted in new
chr15	45396921	45397082	ENSG00000171766.15|GATM|pc|chr15:45396921:45397082:-	0	-
#Deleted in new
chr15	45396921	45397259	ENSG00000171766.15|GATM|pc|chr15:45396921:45397259:-	0	-
#Deleted in new
chr15	45396921	45397346	ENSG00000171766.15|GATM|pc|chr15:45396921:45397346:-	0	-
#Partially deleted in new
chr15	45399545	45399595	ENSG00000171766.15|GATM|pc|chr15:45399545:45399595:-	0	-
#Partially deleted in new
chr15	45401938	45402218	ENSG00000171766.15|GATM|pc|chr15:45401938:45402218:-	0	-
#Partially deleted in new
chr15	45417694	45417794	ENSG00000171763.18|SPATA5L1|pc|chr15:45417694:45417794:+	0	+
#Partially deleted in new
chr15	45433612	45434150	ENSG00000259342.1|AC025580.1|lncRNA|chr15:45433612:45434150:-	0	-
#Deleted in new
chr15	45441780	45441808	ENSG00000259342.1|AC025580.1|lncRNA|chr15:45441780:45441808:-	0	-
#Partially deleted in new
chr15	45448761	45448801	ENSG00000259354.5|AC025580.2|lncRNA|chr15:45448761:45448801:+	0	+
#Deleted in new
chr15	45459009	45459050	ENSG00000259354.5|AC025580.2|lncRNA|chr15:45459009:45459050:+	0	+
#Deleted in new
chr15	45476078	45476309	ENSG00000259354.5|AC025580.2|lncRNA|chr15:45476078:45476309:+	0	+
#Partially deleted in new
chr15	45477768	45479744	ENSG00000259354.5|AC025580.2|lncRNA|chr15:45477768:45479744:+	0	+
#Deleted in new
chr15	45497112	45497281	ENSG00000259354.5|AC025580.2|lncRNA|chr15:45497112:45497281:+	0	+
#Deleted in new
chr15	45502050	45502966	ENSG00000104154.6|SLC30A4|pc|chr15:45502050:45502966:-	0	-
#Deleted in new
chr15	45512372	45512449	ENSG00000259354.5|AC025580.2|lncRNA|chr15:45512372:45512449:+	0	+
#Deleted in new
chr15	45513697	45513767	ENSG00000259354.5|AC025580.2|lncRNA|chr15:45513697:45513767:+	0	+
#Deleted in new
chr15	45558597	45558966	ENSG00000259681.1|AC090527.1|lncRNA|chr15:45558597:45558966:+	0	+
#Deleted in new
chr15	45562815	45562877	ENSG00000259681.1|AC090527.1|lncRNA|chr15:45562815:45562877:+	0	+
#Deleted in new
chr15	45597879	45597891	ENSG00000104164.10|BLOC1S6|pc|chr15:45597879:45597891:+	0	+
#Deleted in new
chr15	45597879	45597996	ENSG00000104164.10|BLOC1S6|pc|chr15:45597879:45597996:+	0	+
#Deleted in new
chr15	45597879	45599562	ENSG00000104164.10|BLOC1S6|pc|chr15:45597879:45599562:+	0	+
#Deleted in new
chr15	45601233	45601407	ENSG00000104164.10|BLOC1S6|pc|chr15:45601233:45601407:+	0	+
#Deleted in new
chr15	45645880	45646008	ENSG00000137767.13|SQOR|pc|chr15:45645880:45646008:+	0	+
#Deleted in new
chr15	45702639	45703183	ENSG00000273972.1|AC068722.2|lncRNA|chr15:45702639:45703183:+	0	+
#Deleted in new
chr15	45706665	45706770	ENSG00000259200.1|AC068722.1|lncRNA|chr15:45706665:45706770:+	0	+
#Deleted in new
chr15	45791794	45791915	ENSG00000259200.1|AC068722.1|lncRNA|chr15:45791794:45791915:+	0	+
#Deleted in new
chr15	45930947	45931069	ENSG00000259200.1|AC068722.1|lncRNA|chr15:45930947:45931069:+	0	+
#Deleted in new
chr1	54621476	54621818	ENSG00000230728.1|AL590093.1|lncRNA|chr1:54621476:54621818:-	0	-
#Deleted in new
chr1	54628157	54628438	ENSG00000230728.1|AL590093.1|lncRNA|chr1:54628157:54628438:-	0	-
#Deleted in new
chr1	54630733	54630886	ENSG00000162390.17|ACOT11|pc|chr1:54630733:54630886:+	0	+
#Deleted in new
chr1	54634687	54639192	ENSG00000162390.17|ACOT11|pc|chr1:54634687:54639192:+	0	+
#Deleted in new
chr1	54659114	54659189	ENSG00000271723.5|MROH7-TTC4|pc|chr1:54659114:54659189:+	0	+
#Deleted in new
chr1	54665608	54665802	ENSG00000184313.19|MROH7|pc|chr1:54665608:54665802:+	0	+
#Deleted in new
chr15	46804640	46804844	ENSG00000259255.1|AC073941.1|lncRNA|chr15:46804640:46804844:+	0	+
#Partially deleted in new
chr1	54697191	54700461	ENSG00000184313.19|MROH7|pc|chr1:54697191:54700461:+	0	+
#Deleted in new
chr1	54697652	54697690	ENSG00000184313.19|MROH7|pc|chr1:54697652:54697690:+	0	+
#Partially deleted in new
chr1	54700068	54700223	ENSG00000184313.19|MROH7|pc|chr1:54700068:54700223:+	0	+
#Partially deleted in new
chr1	54700075	54700208	ENSG00000184313.19|MROH7|pc|chr1:54700075:54700208:+	0	+
#Partially deleted in new
chr1	54700075	54700223	ENSG00000184313.19|MROH7|pc|chr1:54700075:54700223:+	0	+
#Deleted in new
chr15	47133494	47134122	ENSG00000284540.1|AC066615.1|lncRNA|chr15:47133494:47134122:-	0	-
#Deleted in new
chr15	47133651	47134026	ENSG00000284540.1|AC066615.1|lncRNA|chr15:47133651:47134026:-	0	-
#Deleted in new
chr1	54715522	54715610	ENSG00000271723.5|MROH7-TTC4|pc|chr1:54715522:54715610:+	0	+
#Deleted in new
chr15	47339066	47339219	ENSG00000137872.16|SEMA6D|pc|chr15:47339066:47339219:+	0	+
#Deleted in new
chr15	47396350	47396591	ENSG00000259221.5|AC023905.1|lncRNA|chr15:47396350:47396591:-	0	-
#Deleted in new
chr15	47396350	47396605	ENSG00000259221.5|AC023905.1|lncRNA|chr15:47396350:47396605:-	0	-
#Deleted in new
chr15	47396350	47396732	ENSG00000259221.5|AC023905.1|lncRNA|chr15:47396350:47396732:-	0	-
#Deleted in new
chr15	47525168	47525469	ENSG00000259740.1|AC009558.2|lncRNA|chr15:47525168:47525469:+	0	+
#Deleted in new
chr15	47603374	47603458	ENSG00000137872.16|SEMA6D|pc|chr15:47603374:47603458:+	0	+
#Deleted in new
chr15	47603879	47604185	ENSG00000259588.1|AC012050.1|lncRNA|chr15:47603879:47604185:-	0	-
#Deleted in new
chr15	47605281	47605352	ENSG00000259588.1|AC012050.1|lncRNA|chr15:47605281:47605352:-	0	-
#Deleted in new
chr15	47803383	47803435	ENSG00000259572.5|LINC01491|lncRNA|chr15:47803383:47803435:-	0	-
#Deleted in new
chr15	47827558	47827616	ENSG00000259572.5|LINC01491|lncRNA|chr15:47827558:47827616:-	0	-
#Deleted in new
chr15	47827570	47827616	ENSG00000259572.5|LINC01491|lncRNA|chr15:47827570:47827616:-	0	-
#Deleted in new
chr1	5478735	5478841	ENSG00000284692.1|Z98259.3|lncRNA|chr1:5478735:5478841:-	0	-
#Deleted in new
chr15	47944043	47944214	ENSG00000259730.1|AC092078.1|lncRNA|chr15:47944043:47944214:+	0	+
#Deleted in new
chr1	5480786	5481322	ENSG00000284666.1|Z98259.2|lncRNA|chr1:5480786:5481322:-	0	-
#Deleted in new
chr15	48162694	48162893	ENSG00000104177.17|MYEF2|pc|chr15:48162694:48162893:-	0	-
#Deleted in new
chr15	48162718	48162893	ENSG00000104177.17|MYEF2|pc|chr15:48162718:48162893:-	0	-
#Partially deleted in new
chr15	48169844	48169910	ENSG00000104177.17|MYEF2|pc|chr15:48169844:48169910:-	0	-
#Partially deleted in new
chr15	48189119	48189509	ENSG00000259235.1|AC066612.1|lncRNA|chr15:48189119:48189509:-	0	-
#Deleted in new
chr15	48189386	48189509	ENSG00000259235.1|AC066612.1|lncRNA|chr15:48189386:48189509:-	0	-
#Deleted in new
chr15	48190039	48190157	ENSG00000259235.1|AC066612.1|lncRNA|chr15:48190039:48190157:-	0	-
#Deleted in new
chr15	48190057	48190157	ENSG00000259235.1|AC066612.1|lncRNA|chr15:48190057:48190157:-	0	-
#Deleted in new
chr1	5481955	5482028	ENSG00000284666.1|Z98259.2|lncRNA|chr1:5481955:5482028:-	0	-
#Deleted in new
chr15	48236986	48237349	ENSG00000074803.17|SLC12A1|pc|chr15:48236986:48237349:+	0	+
#Deleted in new
chr15	48312352	48312741	ENSG00000259488.2|AC023355.1|lncRNA|chr15:48312352:48312741:-	0	-
#Deleted in new
chr15	48314894	48314963	ENSG00000259488.2|AC023355.1|lncRNA|chr15:48314894:48314963:-	0	-
#Partially deleted in new
chr15	48327565	48331063	ENSG00000259488.2|AC023355.1|lncRNA|chr15:48327565:48331063:-	0	-
#Deleted in new
chr15	48331010	48331191	ENSG00000128951.13|DUT|pc|chr15:48331010:48331191:+	0	+
#Deleted in new
chr15	48331094	48331191	ENSG00000128951.13|DUT|pc|chr15:48331094:48331191:+	0	+
#Partially deleted in new
chr15	48331102	48331846	ENSG00000259488.2|AC023355.1|lncRNA|chr15:48331102:48331846:-	0	-
#Deleted in new
chr15	48331404	48331479	ENSG00000128951.13|DUT|pc|chr15:48331404:48331479:+	0	+
#Partially deleted in new
chr15	48331422	48331795	ENSG00000128951.13|DUT|pc|chr15:48331422:48331795:+	0	+
#Deleted in new
chr15	48331455	48331726	ENSG00000128951.13|DUT|pc|chr15:48331455:48331726:+	0	+
#Partially deleted in new
chr15	48331472	48331795	ENSG00000128951.13|DUT|pc|chr15:48331472:48331795:+	0	+
#Partially deleted in new
chr15	48331562	48331792	ENSG00000259488.2|AC023355.1|lncRNA|chr15:48331562:48331792:-	0	-
#Partially deleted in new
chr15	48331562	48331856	ENSG00000259488.2|AC023355.1|lncRNA|chr15:48331562:48331856:-	0	-
#Deleted in new
chr15	48340144	48340236	ENSG00000128951.13|DUT|pc|chr15:48340144:48340236:+	0	+
#Split in new
chr15	48342021	48343369	ENSG00000128951.13|DUT|pc|chr15:48342021:48343369:+	0	+
#Split in new
chr15	48342021	48343373	ENSG00000128951.13|DUT|pc|chr15:48342021:48343373:+	0	+
#Deleted in new
chr1	54841615	54841702	ENSG00000162398.11|LEXM|pc|chr1:54841615:54841702:+	0	+
#Deleted in new
chr15	48416642	48416716	ENSG00000166147.13|FBN1|pc|chr15:48416642:48416716:-	0	-
#Partially deleted in new
chr15	48528979	48529728	ENSG00000274654.1|AC022467.1|lncRNA|chr15:48528979:48529728:-	0	-
#Partially deleted in new
chr15	48642846	48643101	ENSG00000166147.13|FBN1|pc|chr15:48642846:48643101:-	0	-
#Deleted in new
chr15	48662530	48663056	ENSG00000273925.1|AC084757.4|lncRNA|chr15:48662530:48663056:-	0	-
#Deleted in new
chr15	48712927	48713210	ENSG00000103995.13|CEP152|pc|chr15:48712927:48713210:-	0	-
#Deleted in new
chr15	48729079	48729186	ENSG00000259469.1|AC084757.2|lncRNA|chr15:48729079:48729186:-	0	-
#Deleted in new
chr15	48729411	48729844	ENSG00000259469.1|AC084757.2|lncRNA|chr15:48729411:48729844:-	0	-
#Deleted in new
chr15	48773254	48773531	ENSG00000103995.13|CEP152|pc|chr15:48773254:48773531:-	0	-
#Deleted in new
chr15	48810700	48810807	ENSG00000259700.3|AC012379.2|lncRNA|chr15:48810700:48810807:+	0	+
#Deleted in new
chr15	48810960	48810987	ENSG00000103995.13|CEP152|pc|chr15:48810960:48810987:-	0	-
#Deleted in new
chr15	48876547	48877281	ENSG00000185634.11|SHC4|pc|chr15:48876547:48877281:-	0	-
#Deleted in new
chr15	48876547	48877489	ENSG00000185634.11|SHC4|pc|chr15:48876547:48877489:-	0	-
#Deleted in new
chr15	48877567	48877629	ENSG00000185634.11|SHC4|pc|chr15:48877567:48877629:-	0	-
#Deleted in new
chr15	48877567	48877636	ENSG00000185634.11|SHC4|pc|chr15:48877567:48877636:-	0	-
#Deleted in new
chr15	48877567	48878050	ENSG00000185634.11|SHC4|pc|chr15:48877567:48878050:-	0	-
#Deleted in new
chr15	48877921	48878054	ENSG00000185634.11|SHC4|pc|chr15:48877921:48878054:-	0	-
#Deleted in new
chr15	48945951	48946130	ENSG00000259602.1|AC091073.1|lncRNA|chr15:48945951:48946130:+	0	+
#Deleted in new
chr15	48947184	48947327	ENSG00000259602.1|AC091073.1|lncRNA|chr15:48947184:48947327:+	0	+
#Partially deleted in new
chr15	48947824	48948031	ENSG00000259602.1|AC091073.1|lncRNA|chr15:48947824:48948031:+	0	+
#Deleted in new
chr1	5489794	5491581	ENSG00000284692.1|Z98259.3|lncRNA|chr1:5489794:5491581:-	0	-
#Deleted in new
chr15	48988475	48988621	ENSG00000138593.8|SECISBP2L|pc|chr15:48988475:48988621:-	0	-
#Deleted in new
chr15	49001690	49001941	ENSG00000138593.8|SECISBP2L|pc|chr15:49001690:49001941:-	0	-
#Deleted in new
chr15	49102941	49103264	ENSG00000259656.1|AC013452.2|lncRNA|chr15:49102941:49103264:+	0	+
#Deleted in new
chr15	49106067	49106320	ENSG00000166200.14|COPS2|pc|chr15:49106067:49106320:-	0	-
#Deleted in new
chr1	5491143	5491581	ENSG00000284692.1|Z98259.3|lncRNA|chr1:5491143:5491581:-	0	-
#Deleted in new
chr15	49119044	49119167	ENSG00000166200.14|COPS2|pc|chr15:49119044:49119167:-	0	-
#Deleted in new
chr15	49158844	49158968	ENSG00000156958.14|GALK2|pc|chr15:49158844:49158968:+	0	+
#Deleted in new
chr15	49161739	49161861	ENSG00000156958.14|GALK2|pc|chr15:49161739:49161861:+	0	+
#Deleted in new
chr15	49161763	49161861	ENSG00000156958.14|GALK2|pc|chr15:49161763:49161861:+	0	+
#Deleted in new
chr15	49185613	49185674	ENSG00000156958.14|GALK2|pc|chr15:49185613:49185674:+	0	+
#Deleted in new
chr15	49193910	49194210	ENSG00000156958.14|GALK2|pc|chr15:49193910:49194210:+	0	+
#Deleted in new
chr15	49195084	49195214	ENSG00000156958.14|GALK2|pc|chr15:49195084:49195214:+	0	+
#Deleted in new
chr15	49223128	49223149	ENSG00000156958.14|GALK2|pc|chr15:49223128:49223149:+	0	+
#Deleted in new
chr15	49225204	49225349	ENSG00000156958.14|GALK2|pc|chr15:49225204:49225349:+	0	+
#Deleted in new
chr15	49226674	49226695	ENSG00000156958.14|GALK2|pc|chr15:49226674:49226695:+	0	+
#Deleted in new
chr1	5492487	5492607	ENSG00000284692.1|Z98259.3|lncRNA|chr1:5492487:5492607:-	0	-
#Deleted in new
chr15	49318971	49319116	ENSG00000156958.14|GALK2|pc|chr15:49318971:49319116:+	0	+
#Deleted in new
chr15	49353484	49354034	ENSG00000276593.1|AC022306.3|lncRNA|chr15:49353484:49354034:+	0	+
#Deleted in new
chr15	49395974	49396097	ENSG00000166262.15|FAM227B|pc|chr15:49395974:49396097:-	0	-
#Deleted in new
chr15	49396243	49396442	ENSG00000166262.15|FAM227B|pc|chr15:49396243:49396442:-	0	-
#Deleted in new
chr15	49577171	49577305	ENSG00000166262.15|FAM227B|pc|chr15:49577171:49577305:-	0	-
#Deleted in new
chr15	49606155	49606218	ENSG00000166262.15|FAM227B|pc|chr15:49606155:49606218:-	0	-
#Deleted in new
chr15	49620133	49620190	ENSG00000166262.15|FAM227B|pc|chr15:49620133:49620190:-	0	-
#Deleted in new
chr15	49623670	49623798	ENSG00000104047.14|DTWD1|pc|chr15:49623670:49623798:+	0	+
#Deleted in new
chr15	49626743	49626893	ENSG00000104047.14|DTWD1|pc|chr15:49626743:49626893:+	0	+
#Deleted in new
chr15	49630823	49631060	ENSG00000104047.14|DTWD1|pc|chr15:49630823:49631060:+	0	+
#Deleted in new
chr15	49630955	49631058	ENSG00000104047.14|DTWD1|pc|chr15:49630955:49631058:+	0	+
#Deleted in new
chr15	49631000	49631058	ENSG00000104047.14|DTWD1|pc|chr15:49631000:49631058:+	0	+
#Deleted in new
chr15	49633519	49633612	ENSG00000104047.14|DTWD1|pc|chr15:49633519:49633612:+	0	+
#Partially deleted in new
chr15	49643330	49656232	ENSG00000104047.14|DTWD1|pc|chr15:49643330:49656232:+	0	+
#Deleted in new
chr1	54977724	54977862	ENSG00000284601.1|AL590440.2|lncRNA|chr1:54977724:54977862:-	0	-
#Deleted in new
chr1	54979558	54979643	ENSG00000284601.1|AL590440.2|lncRNA|chr1:54979558:54979643:-	0	-
#Partially deleted in new
chr1	54980791	54981080	ENSG00000143001.4|TMEM61|pc|chr1:54980791:54981080:+	0	+
#Deleted in new
chr15	49880424	49880472	ENSG00000259188.5|AC025040.1|lncRNA|chr15:49880424:49880472:+	0	+
#Deleted in new
chr15	49880584	49880693	ENSG00000259188.5|AC025040.1|lncRNA|chr15:49880584:49880693:+	0	+
#Deleted in new
chr15	49883158	49883208	ENSG00000104043.14|ATP8B4|pc|chr15:49883158:49883208:-	0	-
#Deleted in new
chr15	49883162	49883525	ENSG00000259188.5|AC025040.1|lncRNA|chr15:49883162:49883525:+	0	+
#Deleted in new
chr15	49883217	49883523	ENSG00000259188.5|AC025040.1|lncRNA|chr15:49883217:49883523:+	0	+
#Deleted in new
chr15	49885810	49885925	ENSG00000104043.14|ATP8B4|pc|chr15:49885810:49885925:-	0	-
#Partially deleted in new
chr15	49894891	49897515	ENSG00000104043.14|ATP8B4|pc|chr15:49894891:49897515:-	0	-
#Deleted in new
chr15	49908044	49908093	ENSG00000104043.14|ATP8B4|pc|chr15:49908044:49908093:-	0	-
#Partially deleted in new
chr15	50009271	50009676	ENSG00000104043.14|ATP8B4|pc|chr15:50009271:50009676:-	0	-
#Deleted in new
chr15	50114425	50114504	ENSG00000104043.14|ATP8B4|pc|chr15:50114425:50114504:-	0	-
#Deleted in new
chr15	50191000	50191104	ENSG00000140284.10|SLC27A2|pc|chr15:50191000:50191104:+	0	+
#Deleted in new
chr15	50282278	50282391	ENSG00000104064.16|GABPB1|pc|chr15:50282278:50282391:-	0	-
#Deleted in new
chr15	50327192	50327329	ENSG00000104064.16|GABPB1|pc|chr15:50327192:50327329:-	0	-
#Partially deleted in new
chr15	50356099	50372202	ENSG00000244879.6|GABPB1-AS1|lncRNA|chr15:50356099:50372202:+	0	+
#Deleted in new
chr15	50356470	50356918	ENSG00000244879.6|GABPB1-AS1|lncRNA|chr15:50356470:50356918:+	0	+
#Deleted in new
chr15	50359449	50359732	ENSG00000259715.1|AC022087.1|lncRNA|chr15:50359449:50359732:-	0	-
#Partially deleted in new
chr15	50359865	50360194	ENSG00000259715.1|AC022087.1|lncRNA|chr15:50359865:50360194:-	0	-
#Deleted in new
chr15	50367380	50367439	ENSG00000244879.6|GABPB1-AS1|lncRNA|chr15:50367380:50367439:+	0	+
#Deleted in new
chr15	50426893	50426920	ENSG00000138592.13|USP8|pc|chr15:50426893:50426920:+	0	+
#Deleted in new
chr15	50432337	50432499	ENSG00000138592.13|USP8|pc|chr15:50432337:50432499:+	0	+
#Deleted in new
chr15	50444570	50444616	ENSG00000138592.13|USP8|pc|chr15:50444570:50444616:+	0	+
#Deleted in new
chr15	50484274	50484361	ENSG00000138592.13|USP8|pc|chr15:50484274:50484361:+	0	+
#Deleted in new
chr15	50497639	50497697	ENSG00000259298.1|AC012170.2|lncRNA|chr15:50497639:50497697:-	0	-
#Partially deleted in new
chr15	50498902	50514419	ENSG00000138592.13|USP8|pc|chr15:50498902:50514419:+	0	+
#Deleted in new
chr15	50513409	50513512	ENSG00000170236.14|USP50|pc|chr15:50513409:50513512:-	0	-
#Deleted in new
chr15	50532011	50532227	ENSG00000170236.14|USP50|pc|chr15:50532011:50532227:-	0	-
#Deleted in new
chr15	50543991	50543993	ENSG00000170236.14|USP50|pc|chr15:50543991:50543993:-	0	-
#Deleted in new
chr15	50552472	50552697	ENSG00000092439.13|TRPM7|pc|chr15:50552472:50552697:-	0	-
#Partially deleted in new
chr15	50557157	50561808	ENSG00000092439.13|TRPM7|pc|chr15:50557157:50561808:-	0	-
#Deleted in new
chr15	50557600	50557698	ENSG00000259684.1|AC084756.1|lncRNA|chr15:50557600:50557698:+	0	+
#Deleted in new
chr15	50558622	50558628	ENSG00000259684.1|AC084756.1|lncRNA|chr15:50558622:50558628:+	0	+
#Deleted in new
chr15	50582434	50582464	ENSG00000092439.13|TRPM7|pc|chr15:50582434:50582464:-	0	-
#Deleted in new
chr15	50582434	50582469	ENSG00000092439.13|TRPM7|pc|chr15:50582434:50582469:-	0	-
#Deleted in new
chr15	50742701	50743276	ENSG00000279665.1|AC012100.3|lncRNA|chr15:50742701:50743276:-	0	-
#Deleted in new
chr15	50746708	50746830	ENSG00000259773.1|AC012100.2|lncRNA|chr15:50746708:50746830:+	0	+
#Deleted in new
chr15	50839874	50840005	ENSG00000273674.4|AC021752.1|lncRNA|chr15:50839874:50840005:-	0	-
#Deleted in new
chr15	50839875	50841756	ENSG00000273674.4|AC021752.1|lncRNA|chr15:50839875:50841756:-	0	-
#Deleted in new
chr15	50839878	50840005	ENSG00000273674.4|AC021752.1|lncRNA|chr15:50839878:50840005:-	0	-
#Deleted in new
chr15	50840683	50840939	ENSG00000273674.4|AC021752.1|lncRNA|chr15:50840683:50840939:-	0	-
#Deleted in new
chr15	50841654	50841756	ENSG00000273674.4|AC021752.1|lncRNA|chr15:50841654:50841756:-	0	-
#Deleted in new
chr15	50852448	50852540	ENSG00000273674.4|AC021752.1|lncRNA|chr15:50852448:50852540:-	0	-
#Deleted in new
chr15	50860854	50860931	ENSG00000273674.4|AC021752.1|lncRNA|chr15:50860854:50860931:-	0	-
#Deleted in new
chr15	50874571	50874726	ENSG00000273674.4|AC021752.1|lncRNA|chr15:50874571:50874726:-	0	-
#Deleted in new
chr15	50880927	50881015	ENSG00000273674.4|AC021752.1|lncRNA|chr15:50880927:50881015:-	0	-
#Deleted in new
chr15	50890855	50891077	ENSG00000273674.4|AC021752.1|lncRNA|chr15:50890855:50891077:-	0	-
#Partially deleted in new
chr15	50915555	50915972	ENSG00000081014.10|AP4E1|pc|chr15:50915555:50915972:+	0	+
#Deleted in new
chr15	50918029	50918115	ENSG00000081014.10|AP4E1|pc|chr15:50918029:50918115:+	0	+
#Deleted in new
chr15	51037487	51037681	ENSG00000259240.1|MIR4713HG|lncRNA|chr15:51037487:51037681:+	0	+
#Deleted in new
chr15	51293613	51293912	ENSG00000259240.1|MIR4713HG|lncRNA|chr15:51293613:51293912:+	0	+
#Deleted in new
chr15	51315840	51316137	ENSG00000259306.2|AC020891.2|lncRNA|chr15:51315840:51316137:+	0	+
#Deleted in new
chr15	51320227	51320373	ENSG00000137869.14|CYP19A1|pc|chr15:51320227:51320373:-	0	-
#Deleted in new
chr15	51320948	51321039	ENSG00000259306.2|AC020891.2|lncRNA|chr15:51320948:51321039:+	0	+
#Deleted in new
chr15	51321608	51321996	ENSG00000259306.2|AC020891.2|lncRNA|chr15:51321608:51321996:+	0	+
#Deleted in new
chr15	51338436	51338580	ENSG00000137869.14|CYP19A1|pc|chr15:51338436:51338580:-	0	-
#Deleted in new
chr15	51338494	51338575	ENSG00000137869.14|CYP19A1|pc|chr15:51338494:51338575:-	0	-
#Deleted in new
chr15	51338494	51338581	ENSG00000137869.14|CYP19A1|pc|chr15:51338494:51338581:-	0	-
#Deleted in new
chr15	51338494	51338596	ENSG00000137869.14|CYP19A1|pc|chr15:51338494:51338596:-	0	-
#Deleted in new
chr15	51338494	51338597	ENSG00000137869.14|CYP19A1|pc|chr15:51338494:51338597:-	0	-
#Deleted in new
chr15	51338494	51338598	ENSG00000137869.14|CYP19A1|pc|chr15:51338494:51338598:-	0	-
#Deleted in new
chr15	51338494	51338601	ENSG00000137869.14|CYP19A1|pc|chr15:51338494:51338601:-	0	-
#Deleted in new
chr15	51338494	51338610	ENSG00000137869.14|CYP19A1|pc|chr15:51338494:51338610:-	0	-
#Deleted in new
chr15	51360253	51360537	ENSG00000186417.13|GLDN|pc|chr15:51360253:51360537:+	0	+
#Deleted in new
chr15	51367376	51367475	ENSG00000259194.1|AC020891.1|lncRNA|chr15:51367376:51367475:+	0	+
#Deleted in new
chr15	51369035	51369110	ENSG00000259194.1|AC020891.1|lncRNA|chr15:51369035:51369110:+	0	+
#Deleted in new
chr15	51377257	51377297	ENSG00000186417.13|GLDN|pc|chr15:51377257:51377297:+	0	+
#Deleted in new
chr15	51414096	51414200	ENSG00000259678.1|AC066613.2|lncRNA|chr15:51414096:51414200:+	0	+
#Deleted in new
chr15	51460297	51460567	ENSG00000259668.5|AC066613.1|lncRNA|chr15:51460297:51460567:+	0	+
#Deleted in new
chr15	51460297	51460582	ENSG00000259668.5|AC066613.1|lncRNA|chr15:51460297:51460582:+	0	+
#Deleted in new
chr15	51460354	51460566	ENSG00000259668.5|AC066613.1|lncRNA|chr15:51460354:51460566:+	0	+
#Partially deleted in new
chr15	51567042	51568558	ENSG00000104093.13|DMXL2|pc|chr15:51567042:51568558:-	0	-
#Deleted in new
chr15	51603606	51603701	ENSG00000104093.13|DMXL2|pc|chr15:51603606:51603701:-	0	-
#Deleted in new
chr15	51695632	51695765	ENSG00000259241.1|AC020892.1|lncRNA|chr15:51695632:51695765:-	0	-
#Deleted in new
chr15	51834993	51835058	ENSG00000138594.13|TMOD3|pc|chr15:51834993:51835058:+	0	+
#Partially deleted in new
chr15	51875025	51875270	ENSG00000138594.13|TMOD3|pc|chr15:51875025:51875270:+	0	+
#Deleted in new
chr15	51892355	51892478	ENSG00000259201.1|AC090971.2|lncRNA|chr15:51892355:51892478:-	0	-
#Deleted in new
chr15	51899011	51899134	ENSG00000259201.1|AC090971.2|lncRNA|chr15:51899011:51899134:-	0	-
#Deleted in new
chr15	51901018	51901123	ENSG00000259201.1|AC090971.2|lncRNA|chr15:51901018:51901123:-	0	-
#Deleted in new
chr15	51901265	51901492	ENSG00000138594.13|TMOD3|pc|chr15:51901265:51901492:+	0	+
#Deleted in new
chr15	51911013	51911152	ENSG00000138594.13|TMOD3|pc|chr15:51911013:51911152:+	0	+
#Deleted in new
chr15	51911039	51911124	ENSG00000138594.13|TMOD3|pc|chr15:51911039:51911124:+	0	+
#Deleted in new
chr15	51911039	51911152	ENSG00000138594.13|TMOD3|pc|chr15:51911039:51911152:+	0	+
#Deleted in new
chr15	51933976	51934354	ENSG00000138594.13|TMOD3|pc|chr15:51933976:51934354:+	0	+
#Deleted in new
chr15	51934202	51934354	ENSG00000138594.13|TMOD3|pc|chr15:51934202:51934354:+	0	+
#Deleted in new
chr15	51934249	51934354	ENSG00000138594.13|TMOD3|pc|chr15:51934249:51934354:+	0	+
#Deleted in new
chr15	51936629	51937054	ENSG00000138594.13|TMOD3|pc|chr15:51936629:51937054:+	0	+
#Partially deleted in new
chr15	51946989	51947267	ENSG00000138594.13|TMOD3|pc|chr15:51946989:51947267:+	0	+
#Partially deleted in new
chr15	51946989	51947294	ENSG00000138594.13|TMOD3|pc|chr15:51946989:51947294:+	0	+
#Partially deleted in new
chr15	51946989	51947295	ENSG00000138594.13|TMOD3|pc|chr15:51946989:51947295:+	0	+
#Deleted in new
chr15	52010998	52011466	ENSG00000259438.1|AC090970.2|lncRNA|chr15:52010998:52011466:-	0	-
#Deleted in new
chr15	52024580	52024695	ENSG00000069956.11|MAPK6|pc|chr15:52024580:52024695:+	0	+
#Deleted in new
chr15	52027638	52027873	ENSG00000069956.11|MAPK6|pc|chr15:52027638:52027873:+	0	+
#Deleted in new
chr15	52033706	52034021	ENSG00000259398.1|AC090970.1|lncRNA|chr15:52033706:52034021:+	0	+
#Deleted in new
chr15	52035559	52035625	ENSG00000259398.1|AC090970.1|lncRNA|chr15:52035559:52035625:+	0	+
#Deleted in new
chr15	52042753	52042833	ENSG00000069956.11|MAPK6|pc|chr15:52042753:52042833:+	0	+
#Deleted in new
chr15	52056674	52057255	ENSG00000259712.1|AC023906.5|lncRNA|chr15:52056674:52057255:-	0	-
#Deleted in new
chr15	52083982	52084133	ENSG00000259178.1|AC023906.2|lncRNA|chr15:52083982:52084133:+	0	+
#Deleted in new
chr15	52086316	52086574	ENSG00000259178.1|AC023906.2|lncRNA|chr15:52086316:52086574:+	0	+
#Deleted in new
chr15	52100469	52100523	ENSG00000259712.1|AC023906.5|lncRNA|chr15:52100469:52100523:-	0	-
#Partially deleted in new
chr15	52115104	52122768	ENSG00000069966.18|GNB5|pc|chr15:52115104:52122768:-	0	-
#Deleted in new
chr15	52116573	52116968	ENSG00000259327.1|AC023906.3|lncRNA|chr15:52116573:52116968:+	0	+
#Deleted in new
chr15	52123558	52123624	ENSG00000069966.18|GNB5|pc|chr15:52123558:52123624:-	0	-
#Partially deleted in new
chr15	52125163	52126044	ENSG00000069966.18|GNB5|pc|chr15:52125163:52126044:-	0	-
#Deleted in new
chr15	52125614	52125722	ENSG00000259709.1|AC023906.4|lncRNA|chr15:52125614:52125722:+	0	+
#Deleted in new
chr15	52136979	52137944	ENSG00000069966.18|GNB5|pc|chr15:52136979:52137944:-	0	-
#Deleted in new
chr15	52138426	52139035	ENSG00000259709.1|AC023906.4|lncRNA|chr15:52138426:52139035:+	0	+
#Deleted in new
chr15	52138427	52138607	ENSG00000259709.1|AC023906.4|lncRNA|chr15:52138427:52138607:+	0	+
#Deleted in new
chr15	52139603	52140246	ENSG00000259709.1|AC023906.4|lncRNA|chr15:52139603:52140246:+	0	+
#Deleted in new
chr15	52139812	52139955	ENSG00000069966.18|GNB5|pc|chr15:52139812:52139955:-	0	-
#Deleted in new
chr15	52143869	52144461	ENSG00000069966.18|GNB5|pc|chr15:52143869:52144461:-	0	-
#Deleted in new
chr15	52180092	52180401	ENSG00000259577.1|CERNA1|lncRNA|chr15:52180092:52180401:+	0	+
#Deleted in new
chr15	52180216	52181202	ENSG00000259577.1|CERNA1|lncRNA|chr15:52180216:52181202:+	0	+
#Deleted in new
chr15	52181049	52181202	ENSG00000259577.1|CERNA1|lncRNA|chr15:52181049:52181202:+	0	+
#Partially deleted in new
chr15	52242047	52243559	ENSG00000128833.12|MYO5C|pc|chr15:52242047:52243559:-	0	-
#Deleted in new
chr15	52329100	52329104	ENSG00000197535.14|MYO5A|pc|chr15:52329100:52329104:-	0	-
#Deleted in new
chr15	52564189	52564246	ENSG00000128989.10|ARPP19|pc|chr15:52564189:52564246:-	0	-
#Deleted in new
chr15	52577841	52578075	ENSG00000260618.1|AC025917.1|lncRNA|chr15:52577841:52578075:+	0	+
#Deleted in new
chr15	52598541	52598709	ENSG00000260618.1|AC025917.1|lncRNA|chr15:52598541:52598709:+	0	+
#Deleted in new
chr15	53116364	53116458	ENSG00000259237.1|LINC02490|lncRNA|chr15:53116364:53116458:+	0	+
#Deleted in new
chr15	53540889	53541103	ENSG00000166415.14|WDR72|pc|chr15:53540889:53541103:-	0	-
#Deleted in new
chr15	53540974	53541080	ENSG00000166415.14|WDR72|pc|chr15:53540974:53541080:-	0	-
#Deleted in new
chr15	53684145	53684627	ENSG00000166415.14|WDR72|pc|chr15:53684145:53684627:-	0	-
#Deleted in new
chr15	53759300	53759384	ENSG00000166415.14|WDR72|pc|chr15:53759300:53759384:-	0	-
#Deleted in new
chr15	53759586	53759634	ENSG00000166415.14|WDR72|pc|chr15:53759586:53759634:-	0	-
#Deleted in new
chr15	53759632	53759662	ENSG00000166415.14|WDR72|pc|chr15:53759632:53759662:-	0	-
#Deleted in new
chr15	53762650	53762878	ENSG00000166415.14|WDR72|pc|chr15:53762650:53762878:-	0	-
#Deleted in new
chr15	53910768	53914712	ENSG00000280362.1|AC084759.3|lncRNA|chr15:53910768:53914712:+	0	+
#Deleted in new
chr15	53947623	53947836	ENSG00000259669.5|AC084759.2|lncRNA|chr15:53947623:53947836:-	0	-
#Deleted in new
chr15	53948145	53948608	ENSG00000259669.5|AC084759.2|lncRNA|chr15:53948145:53948608:-	0	-
#Deleted in new
chr15	53948205	53948608	ENSG00000259669.5|AC084759.2|lncRNA|chr15:53948205:53948608:-	0	-
#Deleted in new
chr15	53948488	53948608	ENSG00000259669.5|AC084759.2|lncRNA|chr15:53948488:53948608:-	0	-
#Deleted in new
chr15	53968001	53968150	ENSG00000259669.5|AC084759.2|lncRNA|chr15:53968001:53968150:-	0	-
#Partially deleted in new
chr15	53972669	53972784	ENSG00000259669.5|AC084759.2|lncRNA|chr15:53972669:53972784:-	0	-
#Deleted in new
chr15	54416885	54417070	ENSG00000137766.16|UNC13C|pc|chr15:54416885:54417070:+	0	+
#Deleted in new
chr15	54611474	54611644	ENSG00000137766.16|UNC13C|pc|chr15:54611474:54611644:+	0	+
#Deleted in new
chr15	55056746	55056912	ENSG00000260937.5|AC025272.1|lncRNA|chr15:55056746:55056912:+	0	+
#Deleted in new
chr15	55087998	55088033	ENSG00000260937.5|AC025272.1|lncRNA|chr15:55087998:55088033:+	0	+
#Deleted in new
chr15	55177124	55178175	ENSG00000279145.1|AC011912.1|lncRNA|chr15:55177124:55178175:-	0	-
#Deleted in new
chr15	55194152	55194183	ENSG00000137876.9|RSL24D1|pc|chr15:55194152:55194183:-	0	-
#Deleted in new
chr15	55194295	55194359	ENSG00000137876.9|RSL24D1|pc|chr15:55194295:55194359:-	0	-
#Deleted in new
chr15	55195303	55195591	ENSG00000137876.9|RSL24D1|pc|chr15:55195303:55195591:-	0	-
#Deleted in new
chr15	55196352	55196625	ENSG00000137876.9|RSL24D1|pc|chr15:55196352:55196625:-	0	-
#Deleted in new
chr15	55196352	55196646	ENSG00000137876.9|RSL24D1|pc|chr15:55196352:55196646:-	0	-
#Deleted in new
chr15	55196521	55196629	ENSG00000137876.9|RSL24D1|pc|chr15:55196521:55196629:-	0	-
#Deleted in new
chr15	55238117	55238491	ENSG00000069974.15|RAB27A|pc|chr15:55238117:55238491:-	0	-
#Deleted in new
chr15	55238402	55238491	ENSG00000069974.15|RAB27A|pc|chr15:55238402:55238491:-	0	-
#Deleted in new
chr15	55259920	55260023	ENSG00000069974.15|RAB27A|pc|chr15:55259920:55260023:-	0	-
#Deleted in new
chr15	55314019	55314160	ENSG00000069974.15|RAB27A|pc|chr15:55314019:55314160:-	0	-
#Deleted in new
chr15	55314038	55314160	ENSG00000069974.15|RAB27A|pc|chr15:55314038:55314160:-	0	-
#Deleted in new
chr15	55318863	55319045	ENSG00000225973.3|PIGBOS1|pc|chr15:55318863:55319045:-	0	-
#Deleted in new
chr15	55318900	55319107	ENSG00000225973.3|PIGBOS1|pc|chr15:55318900:55319107:-	0	-
#Partially deleted in new
chr15	55318906	55319161	ENSG00000225973.3|PIGBOS1|pc|chr15:55318906:55319161:-	0	-
#Deleted in new
chr15	55318930	55319110	ENSG00000069974.15|RAB27A|pc|chr15:55318930:55319110:-	0	-
#Deleted in new
chr15	55318930	55319113	ENSG00000069974.15|RAB27A|pc|chr15:55318930:55319113:-	0	-
#Deleted in new
chr15	55319633	55320030	ENSG00000069943.9|PIGB|pc|chr15:55319633:55320030:+	0	+
#Deleted in new
chr15	55324779	55324834	ENSG00000069943.9|PIGB|pc|chr15:55324779:55324834:+	0	+
#Partially deleted in new
chr15	55340031	55340452	ENSG00000260916.7|CCPG1|pc|chr15:55340031:55340452:-	0	-
#Deleted in new
chr15	55343140	55343575	ENSG00000274765.1|AC018926.1|lncRNA|chr15:55343140:55343575:-	0	-
#Partially deleted in new
chr15	55346346	55346752	ENSG00000277548.1|AC018926.3|lncRNA|chr15:55346346:55346752:-	0	-
#Deleted in new
chr15	55348331	55348466	ENSG00000260916.7|CCPG1|pc|chr15:55348331:55348466:-	0	-
#Partially deleted in new
chr15	55349518	55350912	ENSG00000069943.9|PIGB|pc|chr15:55349518:55350912:+	0	+
#Deleted in new
chr15	55351590	55351873	ENSG00000069943.9|PIGB|pc|chr15:55351590:55351873:+	0	+
#Deleted in new
chr15	55399784	55399926	ENSG00000260916.7|CCPG1|pc|chr15:55399784:55399926:-	0	-
#Partially deleted in new
chr15	55407846	55408052	ENSG00000260916.7|CCPG1|pc|chr15:55407846:55408052:-	0	-
#Deleted in new
chr15	55410524	55410843	ENSG00000256061.7|DNAAF4|pc|chr15:55410524:55410843:-	0	-
#Deleted in new
chr15	55411108	55411155	ENSG00000256061.7|DNAAF4|pc|chr15:55411108:55411155:-	0	-
#Deleted in new
chr15	55417697	55417759	ENSG00000261652.2|C15orf65|pc|chr15:55417697:55417759:+	0	+
#Deleted in new
chr15	55417754	55418133	ENSG00000256061.7|DNAAF4|pc|chr15:55417754:55418133:-	0	-
#Deleted in new
chr15	55495127	55495202	ENSG00000256061.7|DNAAF4|pc|chr15:55495127:55495202:-	0	-
#Deleted in new
chr15	55508121	55508234	ENSG00000256061.7|DNAAF4|pc|chr15:55508121:55508234:-	0	-
#Partially deleted in new
chr15	55655075	55656354	ENSG00000166450.12|PRTG|pc|chr15:55655075:55656354:-	0	-
#Deleted in new
chr15	55681316	55681463	ENSG00000259180.1|AC012378.1|lncRNA|chr15:55681316:55681463:+	0	+
#Deleted in new
chr15	55934692	55934754	ENSG00000069869.15|NEDD4|pc|chr15:55934692:55934754:-	0	-
#Deleted in new
chr15	55952653	55952745	ENSG00000069869.15|NEDD4|pc|chr15:55952653:55952745:-	0	-
#Deleted in new
chr15	55987208	55988001	ENSG00000069869.15|NEDD4|pc|chr15:55987208:55988001:-	0	-
#Deleted in new
chr15	55987730	55988001	ENSG00000069869.15|NEDD4|pc|chr15:55987730:55988001:-	0	-
#Deleted in new
chr15	55991925	55992005	ENSG00000069869.15|NEDD4|pc|chr15:55991925:55992005:-	0	-
#Deleted in new
chr15	55993510	55993548	ENSG00000069869.15|NEDD4|pc|chr15:55993510:55993548:-	0	-
#Deleted in new
chr15	55993510	55993602	ENSG00000069869.15|NEDD4|pc|chr15:55993510:55993602:-	0	-
#Deleted in new
chr15	55993510	55993613	ENSG00000069869.15|NEDD4|pc|chr15:55993510:55993613:-	0	-
#Deleted in new
chr15	55993510	55993746	ENSG00000069869.15|NEDD4|pc|chr15:55993510:55993746:-	0	-
#Deleted in new
chr15	56087279	56087509	ENSG00000181827.14|RFX7|pc|chr15:56087279:56087509:-	0	-
#Deleted in new
chr15	56087907	56087990	ENSG00000181827.14|RFX7|pc|chr15:56087907:56087990:-	0	-
#Deleted in new
chr1	55614920	55615002	ENSG00000234810.2|AL603840.1|lncRNA|chr1:55614920:55615002:+	0	+
#Deleted in new
chr1	5561708	5562254	ENSG00000236948.2|AL365255.1|lncRNA|chr1:5561708:5562254:-	0	-
#Deleted in new
chr15	56189834	56189886	ENSG00000181827.14|RFX7|pc|chr15:56189834:56189886:-	0	-
#Deleted in new
chr1	5563169	5563355	ENSG00000236948.2|AL365255.1|lncRNA|chr1:5563169:5563355:-	0	-
#Partially deleted in new
chr15	56394660	56398341	ENSG00000151575.14|TEX9|pc|chr15:56394660:56398341:+	0	+
#Deleted in new
chr15	56408482	56408930	ENSG00000261823.1|AC084782.2|lncRNA|chr15:56408482:56408930:-	0	-
#Deleted in new
chr15	56409795	56410186	ENSG00000261823.1|AC084782.2|lncRNA|chr15:56409795:56410186:-	0	-
#Deleted in new
chr15	56421543	56421778	ENSG00000138587.5|MNS1|pc|chr15:56421543:56421778:-	0	-
#Partially deleted in new
chr15	56447119	56447697	ENSG00000277245.1|AC084782.3|lncRNA|chr15:56447119:56447697:+	0	+
#Deleted in new
chr15	56542951	56543096	ENSG00000260392.5|AC090518.1|lncRNA|chr15:56542951:56543096:-	0	-
#Deleted in new
chr15	56543558	56543812	ENSG00000260392.5|AC090518.1|lncRNA|chr15:56543558:56543812:-	0	-
#Deleted in new
chr15	56547859	56548007	ENSG00000260392.5|AC090518.1|lncRNA|chr15:56547859:56548007:-	0	-
#Deleted in new
chr15	56547937	56548007	ENSG00000260392.5|AC090518.1|lncRNA|chr15:56547937:56548007:-	0	-
#Deleted in new
chr15	56548446	56548601	ENSG00000260392.5|AC090518.1|lncRNA|chr15:56548446:56548601:-	0	-
#Deleted in new
chr15	56549156	56549510	ENSG00000260392.5|AC090518.1|lncRNA|chr15:56549156:56549510:-	0	-
#Deleted in new
chr15	56592719	56592852	ENSG00000260392.5|AC090518.1|lncRNA|chr15:56592719:56592852:-	0	-
#Deleted in new
chr15	56603839	56603871	ENSG00000260392.5|AC090518.1|lncRNA|chr15:56603839:56603871:-	0	-
#Deleted in new
chr15	56605375	56605483	ENSG00000260392.5|AC090518.1|lncRNA|chr15:56605375:56605483:-	0	-
#Deleted in new
chr15	56724846	56724990	ENSG00000137871.19|ZNF280D|pc|chr15:56724846:56724990:-	0	-
#Deleted in new
chr15	56729753	56729782	ENSG00000137871.19|ZNF280D|pc|chr15:56729753:56729782:-	0	-
#Partially deleted in new
chr15	56729931	56730611	ENSG00000274667.1|AC090517.2|lncRNA|chr15:56729931:56730611:-	0	-
#Deleted in new
chr1	55673259	55673317	ENSG00000234810.2|AL603840.1|lncRNA|chr1:55673259:55673317:+	0	+
#Deleted in new
chr15	56827523	56827651	ENSG00000137871.19|ZNF280D|pc|chr15:56827523:56827651:-	0	-
#Deleted in new
chr15	56847323	56847481	ENSG00000137871.19|ZNF280D|pc|chr15:56847323:56847481:-	0	-
#Partially deleted in new
chr15	56859667	56861540	ENSG00000137871.19|ZNF280D|pc|chr15:56859667:56861540:-	0	-
#Deleted in new
chr15	56890013	56890167	ENSG00000137871.19|ZNF280D|pc|chr15:56890013:56890167:-	0	-
#Partially deleted in new
chr15	56908311	56908635	ENSG00000275343.1|AC010999.1|lncRNA|chr15:56908311:56908635:-	0	-
#Deleted in new
chr15	56917146	56917212	ENSG00000137871.19|ZNF280D|pc|chr15:56917146:56917212:-	0	-
#Deleted in new
chr15	57001348	57001384	ENSG00000140262.17|TCF12|pc|chr15:57001348:57001384:+	0	+
#Duplicated in new
chr15	57248015	57248081	ENSG00000140262.17|TCF12|pc|chr15:57248015:57248081:+	0	+
#Deleted in new
chr15	57281646	57281792	ENSG00000140262.17|TCF12|pc|chr15:57281646:57281792:+	0	+
#Deleted in new
chr15	57301438	57301502	ENSG00000247982.6|LINC00926|lncRNA|chr15:57301438:57301502:+	0	+
#Partially deleted in new
chr15	57306299	57307769	ENSG00000247982.6|LINC00926|lncRNA|chr15:57306299:57307769:+	0	+
#Deleted in new
chr15	57307042	57307068	ENSG00000247982.6|LINC00926|lncRNA|chr15:57307042:57307068:+	0	+
#Deleted in new
chr15	57307541	57307758	ENSG00000247982.6|LINC00926|lncRNA|chr15:57307541:57307758:+	0	+
#Deleted in new
chr15	57307541	57307761	ENSG00000247982.6|LINC00926|lncRNA|chr15:57307541:57307761:+	0	+
#Partially deleted in new
chr1	55731179	55735002	ENSG00000234810.2|AL603840.1|lncRNA|chr1:55731179:55735002:+	0	+
#Deleted in new
chr15	57319137	57319456	ENSG00000260172.1|LINC01413|lncRNA|chr15:57319137:57319456:+	0	+
#Deleted in new
chr15	57320792	57320959	ENSG00000260172.1|LINC01413|lncRNA|chr15:57320792:57320959:+	0	+
#Deleted in new
chr15	57322904	57323127	ENSG00000260172.1|LINC01413|lncRNA|chr15:57322904:57323127:+	0	+
#Deleted in new
chr15	57323845	57323908	ENSG00000260172.1|LINC01413|lncRNA|chr15:57323845:57323908:+	0	+
#Deleted in new
chr15	57393952	57394091	ENSG00000128849.10|CGNL1|pc|chr15:57393952:57394091:+	0	+
#Deleted in new
chr15	57396923	57397106	ENSG00000128849.10|CGNL1|pc|chr15:57396923:57397106:+	0	+
#Deleted in new
chr15	57402018	57402038	ENSG00000128849.10|CGNL1|pc|chr15:57402018:57402038:+	0	+
#Partially deleted in new
chr15	57402660	57402714	ENSG00000128849.10|CGNL1|pc|chr15:57402660:57402714:+	0	+
#Deleted in new
chr15	57691898	57691972	ENSG00000137878.16|GCOM1|pc|chr15:57691898:57691972:+	0	+
#Deleted in new
chr15	57701552	57701714	ENSG00000137878.16|GCOM1|pc|chr15:57701552:57701714:+	0	+
#Deleted in new
chr15	57705933	57706372	ENSG00000137878.16|GCOM1|pc|chr15:57705933:57706372:+	0	+
#Partially deleted in new
chr15	57777594	57777745	ENSG00000255529.7|POLR2M|pc|chr15:57777594:57777745:+	0	+
#Deleted in new
chr15	57990216	57990636	ENSG00000274719.1|AC012653.2|lncRNA|chr15:57990216:57990636:-	0	-
#Deleted in new
chr15	58012088	58012148	ENSG00000128918.14|ALDH1A2|pc|chr15:58012088:58012148:-	0	-
#Deleted in new
chr15	58107318	58107468	ENSG00000128918.14|ALDH1A2|pc|chr15:58107318:58107468:-	0	-
#Deleted in new
chr15	58107416	58107468	ENSG00000128918.14|ALDH1A2|pc|chr15:58107416:58107468:-	0	-
#Deleted in new
chr1	55823806	55823901	ENSG00000234810.2|AL603840.1|lncRNA|chr1:55823806:55823901:+	0	+
#Deleted in new
chr15	58241899	58241995	ENSG00000128918.14|ALDH1A2|pc|chr15:58241899:58241995:-	0	-
#Deleted in new
chr15	58258141	58258239	ENSG00000128918.14|ALDH1A2|pc|chr15:58258141:58258239:-	0	-
#Deleted in new
chr15	58258829	58259051	ENSG00000128918.14|ALDH1A2|pc|chr15:58258829:58259051:-	0	-
#Deleted in new
chr1	55832263	55832425	ENSG00000234810.2|AL603840.1|lncRNA|chr1:55832263:55832425:+	0	+
#Deleted in new
chr1	55832263	55832572	ENSG00000234810.2|AL603840.1|lncRNA|chr1:55832263:55832572:+	0	+
#Deleted in new
chr15	58419970	58420105	ENSG00000128918.14|ALDH1A2|pc|chr15:58419970:58420105:-	0	-
#Deleted in new
chr1	55847428	55847537	ENSG00000234810.2|AL603840.1|lncRNA|chr1:55847428:55847537:+	0	+
#Deleted in new
chr15	58498638	58498735	ENSG00000259293.1|LIPC-AS1|lncRNA|chr15:58498638:58498735:-	0	-
#Deleted in new
chr15	58587506	58587912	ENSG00000259250.1|AC018904.1|lncRNA|chr15:58587506:58587912:+	0	+
#Deleted in new
chr1	55862931	55863059	ENSG00000234810.2|AL603840.1|lncRNA|chr1:55862931:55863059:+	0	+
#Deleted in new
chr15	58655242	58655416	ENSG00000137845.14|ADAM10|pc|chr15:58655242:58655416:-	0	-
#Deleted in new
chr1	55868097	55868248	ENSG00000234810.2|AL603840.1|lncRNA|chr1:55868097:55868248:+	0	+
#Deleted in new
chr15	58698279	58698404	ENSG00000137845.14|ADAM10|pc|chr15:58698279:58698404:-	0	-
#Deleted in new
chr15	58707306	58707380	ENSG00000137845.14|ADAM10|pc|chr15:58707306:58707380:-	0	-
#Deleted in new
chr1	5587367	5587575	ENSG00000236948.2|AL365255.1|lncRNA|chr1:5587367:5587575:-	0	-
#Partially deleted in new
chr15	58768071	58768879	ENSG00000245975.2|AC090515.2|lncRNA|chr15:58768071:58768879:-	0	-
#Deleted in new
chr15	58796076	58796166	ENSG00000128923.10|MINDY2|pc|chr15:58796076:58796166:+	0	+
#Deleted in new
chr15	58815271	58815726	ENSG00000259402.1|AC090515.5|lncRNA|chr15:58815271:58815726:+	0	+
#Deleted in new
chr15	58817657	58817728	ENSG00000259402.1|AC090515.5|lncRNA|chr15:58817657:58817728:+	0	+
#Partially deleted in new
chr15	58864738	58865063	ENSG00000259353.1|AC090515.4|lncRNA|chr15:58864738:58865063:-	0	-
#Deleted in new
chr15	59004001	59004174	ENSG00000157450.15|RNF111|pc|chr15:59004001:59004174:+	0	+
#Partially deleted in new
chr15	59115546	59116089	ENSG00000277144.1|AC092757.3|lncRNA|chr15:59115546:59116089:-	0	-
#Deleted in new
chr15	59121033	59121565	ENSG00000259732.1|AC092757.2|lncRNA|chr15:59121033:59121565:+	0	+
#Partially deleted in new
chr15	59132433	59137456	ENSG00000157483.8|MYO1E|pc|chr15:59132433:59137456:-	0	-
#Deleted in new
chr15	59133149	59133250	ENSG00000259732.1|AC092757.2|lncRNA|chr15:59133149:59133250:+	0	+
#Deleted in new
chr15	59264902	59264997	ENSG00000157483.8|MYO1E|pc|chr15:59264902:59264997:-	0	-
#Deleted in new
chr15	59266719	59266915	ENSG00000259771.1|AC092756.1|lncRNA|chr15:59266719:59266915:-	0	-
#Deleted in new
chr15	59348647	59348861	ENSG00000259735.1|AC092868.2|lncRNA|chr15:59348647:59348861:-	0	-
#Deleted in new
chr15	59443989	59444310	ENSG00000157470.11|FAM81A|pc|chr15:59443989:59444310:+	0	+
#Deleted in new
chr15	59446431	59446465	ENSG00000157470.11|FAM81A|pc|chr15:59446431:59446465:+	0	+
#Deleted in new
chr1	55944915	55944963	ENSG00000230250.2|LINC01753|lncRNA|chr1:55944915:55944963:-	0	-
#Deleted in new
chr1	55944915	55944974	ENSG00000230250.2|LINC01753|lncRNA|chr1:55944915:55944974:-	0	-
#Deleted in new
chr15	59594874	59594914	ENSG00000140297.12|GCNT3|pc|chr15:59594874:59594914:+	0	+
#Deleted in new
chr15	59595728	59595913	ENSG00000140297.12|GCNT3|pc|chr15:59595728:59595913:+	0	+
#Deleted in new
chr15	59596242	59596354	ENSG00000140297.12|GCNT3|pc|chr15:59596242:59596354:+	0	+
#Deleted in new
chr15	59596293	59596354	ENSG00000140297.12|GCNT3|pc|chr15:59596293:59596354:+	0	+
#Deleted in new
chr15	59599642	59599711	ENSG00000140297.12|GCNT3|pc|chr15:59599642:59599711:+	0	+
#Deleted in new
chr15	59599652	59599711	ENSG00000140297.12|GCNT3|pc|chr15:59599652:59599711:+	0	+
#Deleted in new
chr15	59599676	59599711	ENSG00000140297.12|GCNT3|pc|chr15:59599676:59599711:+	0	+
#Deleted in new
chr15	59609734	59609868	ENSG00000140297.12|GCNT3|pc|chr15:59609734:59609868:+	0	+
#Deleted in new
chr15	59644297	59644326	ENSG00000227161.1|AC092755.1|lncRNA|chr15:59644297:59644326:-	0	-
#Deleted in new
chr15	59665349	59665442	ENSG00000140299.11|BNIP2|pc|chr15:59665349:59665442:-	0	-
#Partially deleted in new
chr15	59672234	59672302	ENSG00000227161.1|AC092755.1|lncRNA|chr15:59672234:59672302:-	0	-
#Deleted in new
chr15	60036109	60036229	ENSG00000171956.6|FOXB1|pc|chr15:60036109:60036229:+	0	+
#Deleted in new
chr15	60036129	60036242	ENSG00000171956.6|FOXB1|pc|chr15:60036129:60036242:+	0	+
#Deleted in new
chr15	60061647	60061730	ENSG00000171956.6|FOXB1|pc|chr15:60061647:60061730:+	0	+
#Partially deleted in new
chr15	60382341	60384827	ENSG00000182718.16|ANXA2|pc|chr15:60382341:60384827:-	0	-
#Deleted in new
chr15	60391022	60391127	ENSG00000182718.16|ANXA2|pc|chr15:60391022:60391127:-	0	-
#Deleted in new
chr15	60391107	60391151	ENSG00000182718.16|ANXA2|pc|chr15:60391107:60391151:-	0	-
#Deleted in new
chr15	60391242	60391297	ENSG00000182718.16|ANXA2|pc|chr15:60391242:60391297:-	0	-
#Partially deleted in new
chr15	60394573	60394695	ENSG00000182718.16|ANXA2|pc|chr15:60394573:60394695:-	0	-
#Partially deleted in new
chr15	60395906	60396427	ENSG00000182718.16|ANXA2|pc|chr15:60395906:60396427:-	0	-
#Deleted in new
chr15	60396150	60396427	ENSG00000182718.16|ANXA2|pc|chr15:60396150:60396427:-	0	-
#Deleted in new
chr15	60396279	60396427	ENSG00000182718.16|ANXA2|pc|chr15:60396279:60396427:-	0	-
#Deleted in new
chr15	60396372	60396427	ENSG00000182718.16|ANXA2|pc|chr15:60396372:60396427:-	0	-
#Partially deleted in new
chr15	60398644	60398742	ENSG00000182718.16|ANXA2|pc|chr15:60398644:60398742:-	0	-
#Deleted in new
chr15	60402768	60402883	ENSG00000182718.16|ANXA2|pc|chr15:60402768:60402883:-	0	-
#Partially deleted in new
chr15	60479177	60479398	ENSG00000245534.6|RORA-AS1|lncRNA|chr15:60479177:60479398:+	0	+
#Partially deleted in new
chr15	60479180	60479398	ENSG00000245534.6|RORA-AS1|lncRNA|chr15:60479180:60479398:+	0	+
#Partially deleted in new
chr15	60479206	60479398	ENSG00000245534.6|RORA-AS1|lncRNA|chr15:60479206:60479398:+	0	+
#Partially deleted in new
chr15	60479219	60479398	ENSG00000245534.6|RORA-AS1|lncRNA|chr15:60479219:60479398:+	0	+
#Deleted in new
chr15	60512032	60512097	ENSG00000069667.15|RORA|pc|chr15:60512032:60512097:-	0	-
#Deleted in new
chr15	60598447	60598512	ENSG00000245534.6|RORA-AS1|lncRNA|chr15:60598447:60598512:+	0	+
#Partially deleted in new
chr15	60681568	60681995	ENSG00000259482.1|RORA-AS2|lncRNA|chr15:60681568:60681995:+	0	+
#Deleted in new
chr15	60681626	60681995	ENSG00000259482.1|RORA-AS2|lncRNA|chr15:60681626:60681995:+	0	+
#Deleted in new
chr15	60682358	60682433	ENSG00000259482.1|RORA-AS2|lncRNA|chr15:60682358:60682433:+	0	+
#Partially deleted in new
chr15	61181248	61181397	ENSG00000259481.1|AC012404.1|lncRNA|chr15:61181248:61181397:+	0	+
#Deleted in new
chr15	61182936	61183082	ENSG00000259481.1|AC012404.1|lncRNA|chr15:61182936:61183082:+	0	+
#Deleted in new
chr1	56145720	56145881	ENSG00000235612.1|AL353681.1|lncRNA|chr1:56145720:56145881:+	0	+
#Deleted in new
chr1	56154544	56155055	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56154544:56155055:-	0	-
#Deleted in new
chr1	56154656	56155055	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56154656:56155055:-	0	-
#Deleted in new
chr1	56154656	56155079	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56154656:56155079:-	0	-
#Deleted in new
chr1	56154656	56155105	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56154656:56155105:-	0	-
#Deleted in new
chr1	56154925	56155224	ENSG00000235612.1|AL353681.1|lncRNA|chr1:56154925:56155224:+	0	+
#Deleted in new
chr1	56155718	56155802	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56155718:56155802:-	0	-
#Partially deleted in new
chr15	61604404	61605241	ENSG00000259530.1|AC104574.1|lncRNA|chr15:61604404:61605241:+	0	+
#Deleted in new
chr1	56165782	56166159	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56165782:56166159:-	0	-
#Deleted in new
chr1	56165786	56166159	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56165786:56166159:-	0	-
#Deleted in new
chr1	56165805	56166159	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56165805:56166159:-	0	-
#Deleted in new
chr1	56166079	56166159	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56166079:56166159:-	0	-
#Deleted in new
chr15	61715114	61715171	ENSG00000259675.1|AC018618.1|lncRNA|chr15:61715114:61715171:-	0	-
#Deleted in new
chr1	56172203	56172715	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56172203:56172715:-	0	-
#Deleted in new
chr1	56172555	56172589	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56172555:56172589:-	0	-
#Deleted in new
chr1	56172555	56172666	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56172555:56172666:-	0	-
#Deleted in new
chr1	56172555	56172730	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56172555:56172730:-	0	-
#Deleted in new
chr1	56183494	56183620	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56183494:56183620:-	0	-
#Deleted in new
chr1	56183494	56183620	ENSG00000284686.1|AC119674.2|pc|chr1:56183494:56183620:-	0	-
#Partially deleted in new
chr15	61906642	61907390	ENSG00000129003.15|VPS13C|pc|chr15:61906642:61907390:-	0	-
#Partially deleted in new
chr15	62060502	62060843	ENSG00000259251.2|AC104590.1|lncRNA|chr15:62060502:62060843:+	0	+
#Deleted in new
chr15	62060967	62061274	ENSG00000259251.2|AC104590.1|lncRNA|chr15:62060967:62061274:+	0	+
#Deleted in new
chr1	56214790	56214865	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56214790:56214865:-	0	-
#Deleted in new
chr15	62196144	62196762	ENSG00000259697.1|AC126323.2|lncRNA|chr15:62196144:62196762:-	0	-
#Deleted in new
chr15	62196928	62197046	ENSG00000259697.1|AC126323.2|lncRNA|chr15:62196928:62197046:-	0	-
#Deleted in new
chr15	62198803	62198874	ENSG00000259697.1|AC126323.2|lncRNA|chr15:62198803:62198874:-	0	-
#Deleted in new
chr15	62201756	62203318	ENSG00000259697.1|AC126323.2|lncRNA|chr15:62201756:62203318:-	0	-
#Deleted in new
chr15	62230937	62231010	ENSG00000259878.1|AC126323.3|lncRNA|chr15:62230937:62231010:-	0	-
#Deleted in new
chr15	62231785	62231895	ENSG00000259878.1|AC126323.3|lncRNA|chr15:62231785:62231895:-	0	-
#Deleted in new
chr15	62274162	62274275	ENSG00000261296.1|AC126323.6|lncRNA|chr15:62274162:62274275:+	0	+
#Partially deleted in new
chr15	62276390	62276535	ENSG00000261296.1|AC126323.6|lncRNA|chr15:62276390:62276535:+	0	+
#Deleted in new
chr15	62278165	62278358	ENSG00000261296.1|AC126323.6|lncRNA|chr15:62278165:62278358:+	0	+
#Deleted in new
chr15	62284189	62284315	ENSG00000260957.1|AC126323.5|lncRNA|chr15:62284189:62284315:+	0	+
#Deleted in new
chr15	62284540	62285006	ENSG00000260957.1|AC126323.5|lncRNA|chr15:62284540:62285006:+	0	+
#Partially deleted in new
chr15	62644516	62645181	ENSG00000259458.1|MGC15885|lncRNA|chr15:62644516:62645181:-	0	-
#Deleted in new
chr15	62682915	62683056	ENSG00000259756.1|AC100839.1|lncRNA|chr15:62682915:62683056:-	0	-
#Deleted in new
chr15	62683981	62684104	ENSG00000259756.1|AC100839.1|lncRNA|chr15:62683981:62684104:-	0	-
#Deleted in new
chr15	62690244	62690448	ENSG00000259756.1|AC100839.1|lncRNA|chr15:62690244:62690448:-	0	-
#Deleted in new
chr15	62838109	62838155	ENSG00000259370.2|AC103740.1|lncRNA|chr15:62838109:62838155:-	0	-
#Deleted in new
chr15	63098869	63098980	ENSG00000259672.1|AC087612.1|lncRNA|chr15:63098869:63098980:+	0	+
#Deleted in new
chr15	63125871	63126020	ENSG00000185088.13|RPS27L|pc|chr15:63125871:63126020:-	0	-
#Partially deleted in new
chr15	63148249	63154060	ENSG00000185088.13|RPS27L|pc|chr15:63148249:63154060:-	0	-
#Deleted in new
chr15	63223041	63223073	ENSG00000166128.12|RAB8B|pc|chr15:63223041:63223073:+	0	+
#Deleted in new
chr15	63276017	63276160	ENSG00000138613.13|APH1B|pc|chr15:63276017:63276160:+	0	+
#Deleted in new
chr15	63276033	63276262	ENSG00000138613.13|APH1B|pc|chr15:63276033:63276262:+	0	+
#Deleted in new
chr15	63291685	63291997	ENSG00000138613.13|APH1B|pc|chr15:63291685:63291997:+	0	+
#Deleted in new
chr15	63378754	63379073	ENSG00000074410.13|CA12|pc|chr15:63378754:63379073:-	0	-
#Deleted in new
chr15	63394850	63394911	ENSG00000259459.5|AC087525.1|lncRNA|chr15:63394850:63394911:+	0	+
#Deleted in new
chr15	63395600	63395681	ENSG00000259459.5|AC087525.1|lncRNA|chr15:63395600:63395681:+	0	+
#Deleted in new
chr15	63398386	63398467	ENSG00000259459.5|AC087525.1|lncRNA|chr15:63398386:63398467:+	0	+
#Deleted in new
chr1	56341660	56341728	ENSG00000260971.4|AC119674.1|lncRNA|chr1:56341660:56341728:-	0	-
#Partially deleted in new
chr15	63432151	63432177	ENSG00000259459.5|AC087525.1|lncRNA|chr15:63432151:63432177:+	0	+
#Deleted in new
chr15	63529013	63529166	ENSG00000140455.16|USP3|pc|chr15:63529013:63529166:+	0	+
#Deleted in new
chr15	63529141	63529166	ENSG00000140455.16|USP3|pc|chr15:63529141:63529166:+	0	+
#Deleted in new
chr15	63530497	63530590	ENSG00000140455.16|USP3|pc|chr15:63530497:63530590:+	0	+
#Deleted in new
chr15	63544246	63544379	ENSG00000259248.5|USP3-AS1|lncRNA|chr15:63544246:63544379:-	0	-
#Deleted in new
chr15	63544288	63544379	ENSG00000259248.5|USP3-AS1|lncRNA|chr15:63544288:63544379:-	0	-
#Deleted in new
chr15	63544624	63544728	ENSG00000140455.16|USP3|pc|chr15:63544624:63544728:+	0	+
#Deleted in new
chr15	63551294	63551342	ENSG00000259248.5|USP3-AS1|lncRNA|chr15:63551294:63551342:-	0	-
#Deleted in new
chr15	63556290	63556470	ENSG00000259248.5|USP3-AS1|lncRNA|chr15:63556290:63556470:-	0	-
#Deleted in new
chr15	63594694	63594704	ENSG00000259248.5|USP3-AS1|lncRNA|chr15:63594694:63594704:-	0	-
#Deleted in new
chr15	63594694	63594786	ENSG00000259248.5|USP3-AS1|lncRNA|chr15:63594694:63594786:-	0	-
#Deleted in new
chr15	63601257	63601589	ENSG00000259248.5|USP3-AS1|lncRNA|chr15:63601257:63601589:-	0	-
#Deleted in new
chr15	63601295	63601605	ENSG00000197361.7|FBXL22|pc|chr15:63601295:63601605:+	0	+
#Deleted in new
chr15	63779582	63780009	ENSG00000103657.13|HERC1|pc|chr15:63779582:63780009:-	0	-
#Deleted in new
chr15	63780461	63780552	ENSG00000103657.13|HERC1|pc|chr15:63780461:63780552:-	0	-
#Deleted in new
chr15	63909676	63909774	ENSG00000035664.11|DAPK2|pc|chr15:63909676:63909774:-	0	-
#Deleted in new
chr15	63910699	63911216	ENSG00000035664.11|DAPK2|pc|chr15:63910699:63911216:-	0	-
#Deleted in new
chr15	63932561	63932677	ENSG00000259351.1|AC015914.1|lncRNA|chr15:63932561:63932677:+	0	+
#Deleted in new
chr15	63935540	63935953	ENSG00000259351.1|AC015914.1|lncRNA|chr15:63935540:63935953:+	0	+
#Partially deleted in new
chr15	64029788	64030020	ENSG00000035664.11|DAPK2|pc|chr15:64029788:64030020:-	0	-
#Deleted in new
chr15	64063159	64063318	ENSG00000035664.11|DAPK2|pc|chr15:64063159:64063318:-	0	-
#Deleted in new
chr15	64064235	64064447	ENSG00000035664.11|DAPK2|pc|chr15:64064235:64064447:-	0	-
#Deleted in new
chr15	64073787	64073817	ENSG00000166797.10|FAM96A|pc|chr15:64073787:64073817:-	0	-
#Deleted in new
chr15	64090197	64090315	ENSG00000166797.10|FAM96A|pc|chr15:64090197:64090315:-	0	-
#Deleted in new
chr15	64115588	64115706	ENSG00000028528.14|SNX1|pc|chr15:64115588:64115706:+	0	+
#Partially deleted in new
chr15	64159273	64160197	ENSG00000166794.4|PPIB|pc|chr15:64159273:64160197:-	0	-
#Deleted in new
chr15	64193943	64194308	ENSG00000169118.17|CSNK1G1|pc|chr15:64193943:64194308:-	0	-
#Deleted in new
chr15	64195015	64195079	ENSG00000169118.17|CSNK1G1|pc|chr15:64195015:64195079:-	0	-
#Deleted in new
chr15	64265765	64265914	ENSG00000259316.10|AC087632.1|pc|chr15:64265765:64265914:-	0	-
#Deleted in new
chr15	64316856	64317007	ENSG00000169118.17|CSNK1G1|pc|chr15:64316856:64317007:-	0	-
#Deleted in new
chr15	64316940	64316996	ENSG00000169118.17|CSNK1G1|pc|chr15:64316940:64316996:-	0	-
#Deleted in new
chr15	64335784	64335861	ENSG00000259316.10|AC087632.1|pc|chr15:64335784:64335861:-	0	-
#Deleted in new
chr15	64342542	64342685	ENSG00000259316.10|AC087632.1|pc|chr15:64342542:64342685:-	0	-
#Deleted in new
chr15	64348359	64348382	ENSG00000169118.17|CSNK1G1|pc|chr15:64348359:64348382:-	0	-
#Deleted in new
chr15	64382424	64382990	ENSG00000166803.11|PCLAF|pc|chr15:64382424:64382990:-	0	-
#Deleted in new
chr15	64450664	64450986	ENSG00000103671.9|TRIP4|pc|chr15:64450664:64450986:+	0	+
#Deleted in new
chr15	64470252	64470582	ENSG00000259682.1|AC091231.1|lncRNA|chr15:64470252:64470582:+	0	+
#Deleted in new
chr15	64471303	64471364	ENSG00000259682.1|AC091231.1|lncRNA|chr15:64471303:64471364:+	0	+
#Deleted in new
chr15	64643769	64643802	ENSG00000180357.9|ZNF609|pc|chr15:64643769:64643802:+	0	+
#Deleted in new
chr15	64654058	64654402	ENSG00000180357.9|ZNF609|pc|chr15:64654058:64654402:+	0	+
#Deleted in new
chr15	64690907	64691009	ENSG00000180304.14|OAZ2|pc|chr15:64690907:64691009:-	0	-
#Deleted in new
chr15	64693074	64693181	ENSG00000180304.14|OAZ2|pc|chr15:64693074:64693181:-	0	-
#Deleted in new
chr1	56478885	56479111	ENSG00000284686.1|AC119674.2|pc|chr1:56478885:56479111:-	0	-
#Deleted in new
chr15	64914032	64914130	ENSG00000166839.16|ANKDD1A|pc|chr15:64914032:64914130:+	0	+
#Deleted in new
chr15	64919818	64919976	ENSG00000166839.16|ANKDD1A|pc|chr15:64919818:64919976:+	0	+
#Partially deleted in new
chr15	64931486	64932514	ENSG00000166839.16|ANKDD1A|pc|chr15:64931486:64932514:+	0	+
#Partially deleted in new
chr15	64931486	64932756	ENSG00000166839.16|ANKDD1A|pc|chr15:64931486:64932756:+	0	+
#Deleted in new
chr15	64957102	64957238	ENSG00000166839.16|ANKDD1A|pc|chr15:64957102:64957238:+	0	+
#Deleted in new
chr15	64957102	64958691	ENSG00000166839.16|ANKDD1A|pc|chr15:64957102:64958691:+	0	+
#Deleted in new
chr15	64957102	64958700	ENSG00000166839.16|ANKDD1A|pc|chr15:64957102:64958700:+	0	+
#Deleted in new
chr15	64982932	64983180	ENSG00000090487.10|SPG21|pc|chr15:64982932:64983180:-	0	-
#Partially deleted in new
chr15	64988618	64988816	ENSG00000090487.10|SPG21|pc|chr15:64988618:64988816:-	0	-
#Partially deleted in new
chr15	64988618	64988925	ENSG00000090487.10|SPG21|pc|chr15:64988618:64988925:-	0	-
#Partially deleted in new
chr15	65001511	65003256	ENSG00000103707.9|MTFMT|pc|chr15:65001511:65003256:-	0	-
#Partially deleted in new
chr15	65094474	65101628	ENSG00000246922.8|UBAP1L|pc|chr15:65094474:65101628:-	0	-
#Deleted in new
chr15	65234459	65234823	ENSG00000138617.14|PARP16|pc|chr15:65234459:65234823:-	0	-
#Deleted in new
chr15	65282546	65282632	ENSG00000138617.14|PARP16|pc|chr15:65282546:65282632:-	0	-
#Deleted in new
chr15	65300196	65300618	ENSG00000138617.14|PARP16|pc|chr15:65300196:65300618:-	0	-
#Deleted in new
chr15	65535720	65535834	ENSG00000074696.12|HACD3|pc|chr15:65535720:65535834:+	0	+
#Partially deleted in new
chr15	65564221	65566967	ENSG00000074696.12|HACD3|pc|chr15:65564221:65566967:+	0	+
#Deleted in new
chr15	65574264	65574550	ENSG00000074696.12|HACD3|pc|chr15:65574264:65574550:+	0	+
#Deleted in new
chr15	65586425	65586958	ENSG00000138614.14|INTS14|pc|chr15:65586425:65586958:-	0	-
#Deleted in new
chr15	65611811	65611902	ENSG00000074621.13|SLC24A1|pc|chr15:65611811:65611902:+	0	+
#Deleted in new
chr15	65618879	65618980	ENSG00000074621.13|SLC24A1|pc|chr15:65618879:65618980:+	0	+
#Deleted in new
chr15	65680634	65681314	ENSG00000174485.15|DENND4A|pc|chr15:65680634:65681314:-	0	-
#Deleted in new
chr15	65753879	65753935	ENSG00000103769.9|RAB11A|pc|chr15:65753879:65753935:+	0	+
#Partially deleted in new
chr15	65766459	65766776	ENSG00000261544.1|AC011939.2|lncRNA|chr15:65766459:65766776:-	0	-
#Partially deleted in new
chr15	65767287	65767398	ENSG00000261544.1|AC011939.2|lncRNA|chr15:65767287:65767398:-	0	-
#Deleted in new
chr15	65859618	65859751	ENSG00000103769.9|RAB11A|pc|chr15:65859618:65859751:+	0	+
#Partially deleted in new
chr15	65921691	65922107	ENSG00000157890.17|MEGF11|pc|chr15:65921691:65922107:-	0	-
#Deleted in new
chr15	65967071	65967136	ENSG00000157890.17|MEGF11|pc|chr15:65967071:65967136:-	0	-
#Deleted in new
chr15	65971165	65971220	ENSG00000157890.17|MEGF11|pc|chr15:65971165:65971220:-	0	-
#Deleted in new
chr15	65971203	65971230	ENSG00000157890.17|MEGF11|pc|chr15:65971203:65971230:-	0	-
#Deleted in new
chr15	65971203	65971264	ENSG00000157890.17|MEGF11|pc|chr15:65971203:65971264:-	0	-
#Partially deleted in new
chr15	66293831	66293916	ENSG00000166938.12|DIS3L|pc|chr15:66293831:66293916:+	0	+
#Deleted in new
chr15	66329612	66330024	ENSG00000166938.12|DIS3L|pc|chr15:66329612:66330024:+	0	+
#Deleted in new
chr15	66331409	66331703	ENSG00000260773.1|AC055855.2|lncRNA|chr15:66331409:66331703:-	0	-
#Deleted in new
chr15	66356638	66356685	ENSG00000075131.9|TIPIN|pc|chr15:66356638:66356685:-	0	-
#Deleted in new
chr15	66356638	66356716	ENSG00000075131.9|TIPIN|pc|chr15:66356638:66356716:-	0	-
#Deleted in new
chr15	66453453	66453543	ENSG00000169032.9|MAP2K1|pc|chr15:66453453:66453543:+	0	+
#Deleted in new
chr15	66492001	66492109	ENSG00000261351.2|AC116913.1|lncRNA|chr15:66492001:66492109:-	0	-
#Partially deleted in new
chr15	66493467	66494552	ENSG00000174446.12|SNAPC5|pc|chr15:66493467:66494552:-	0	-
#Partially deleted in new
chr15	66493812	66494552	ENSG00000174446.12|SNAPC5|pc|chr15:66493812:66494552:-	0	-
#Partially deleted in new
chr15	66493843	66494552	ENSG00000174446.12|SNAPC5|pc|chr15:66493843:66494552:-	0	-
#Partially deleted in new
chr15	66498014	66499652	ENSG00000174444.14|RPL4|pc|chr15:66498014:66499652:-	0	-
#Partially deleted in new
chr15	66500292	66500842	ENSG00000174444.14|RPL4|pc|chr15:66500292:66500842:-	0	-
#Duplicated in new
chr15	66501559	66501912	ENSG00000174444.14|RPL4|pc|chr15:66501559:66501912:-	0	-
#Deleted in new
chr15	66514326	66514522	ENSG00000174442.11|ZWILCH|pc|chr15:66514326:66514522:+	0	+
#Deleted in new
chr15	66524454	66524532	ENSG00000174444.14|RPL4|pc|chr15:66524454:66524532:-	0	-
#Deleted in new
chr15	66547242	66547292	ENSG00000174442.11|ZWILCH|pc|chr15:66547242:66547292:+	0	+
#Deleted in new
chr15	66582189	66582248	ENSG00000259471.1|LINC01169|lncRNA|chr15:66582189:66582248:+	0	+
#Deleted in new
chr15	66664361	66664452	ENSG00000259471.1|LINC01169|lncRNA|chr15:66664361:66664452:+	0	+
#Deleted in new
chr15	66668340	66668454	ENSG00000259471.1|LINC01169|lncRNA|chr15:66668340:66668454:+	0	+
#Deleted in new
chr15	66683998	66684042	ENSG00000259471.1|LINC01169|lncRNA|chr15:66683998:66684042:+	0	+
#Deleted in new
chr15	66685269	66685794	ENSG00000259471.1|LINC01169|lncRNA|chr15:66685269:66685794:+	0	+
#Deleted in new
chr1	56671440	56671447	ENSG00000162409.10|PRKAA2|pc|chr1:56671440:56671447:+	0	+
#Partially deleted in new
chr15	66740444	66741151	ENSG00000274995.1|AC013564.1|lncRNA|chr15:66740444:66741151:+	0	+
#Deleted in new
chr1	5668140	5668255	ENSG00000236948.2|AL365255.1|lncRNA|chr1:5668140:5668255:-	0	-
#Deleted in new
chr1	5668140	5668295	ENSG00000236948.2|AL365255.1|lncRNA|chr1:5668140:5668295:-	0	-
#Partially deleted in new
chr15	66860302	66867023	ENSG00000277152.1|AC110048.2|lncRNA|chr15:66860302:66867023:+	0	+
#Deleted in new
chr15	66941899	66942151	ENSG00000259289.2|LINC02206|lncRNA|chr15:66941899:66942151:-	0	-
#Deleted in new
chr15	66956339	66956518	ENSG00000259289.2|LINC02206|lncRNA|chr15:66956339:66956518:-	0	-
#Deleted in new
chr15	66984107	66984234	ENSG00000259347.6|AC087482.1|lncRNA|chr15:66984107:66984234:-	0	-
#Deleted in new
chr15	66985441	66985483	ENSG00000259347.6|AC087482.1|lncRNA|chr15:66985441:66985483:-	0	-
#Deleted in new
chr15	66986367	66986497	ENSG00000259347.6|AC087482.1|lncRNA|chr15:66986367:66986497:-	0	-
#Deleted in new
chr15	66994091	66994187	ENSG00000259347.6|AC087482.1|lncRNA|chr15:66994091:66994187:-	0	-
#Deleted in new
chr15	67142733	67143086	ENSG00000259202.1|AC012568.1|lncRNA|chr15:67142733:67143086:-	0	-
#Deleted in new
chr15	67174302	67174584	ENSG00000166949.15|SMAD3|pc|chr15:67174302:67174584:+	0	+
#Deleted in new
chr15	67226698	67226950	ENSG00000103591.12|AAGAB|pc|chr15:67226698:67226950:-	0	-
#Deleted in new
chr1	56731891	56731967	ENSG00000187889.12|FYB2|pc|chr1:56731891:56731967:-	0	-
#Deleted in new
chr15	67371427	67371533	ENSG00000103599.19|IQCH|pc|chr15:67371427:67371533:+	0	+
#Deleted in new
chr15	67371524	67371533	ENSG00000103599.19|IQCH|pc|chr15:67371524:67371533:+	0	+
#Deleted in new
chr15	67413502	67413538	ENSG00000259673.5|IQCH-AS1|lncRNA|chr15:67413502:67413538:-	0	-
#Deleted in new
chr15	67466493	67466711	ENSG00000259673.5|IQCH-AS1|lncRNA|chr15:67466493:67466711:-	0	-
#Deleted in new
chr15	67466493	67466757	ENSG00000259673.5|IQCH-AS1|lncRNA|chr15:67466493:67466757:-	0	-
#Deleted in new
chr15	67466961	67467054	ENSG00000259673.5|IQCH-AS1|lncRNA|chr15:67466961:67467054:-	0	-
#Deleted in new
chr15	67518999	67519102	ENSG00000259673.5|IQCH-AS1|lncRNA|chr15:67518999:67519102:-	0	-
#Deleted in new
chr15	67520005	67520101	ENSG00000259673.5|IQCH-AS1|lncRNA|chr15:67520005:67520101:-	0	-
#Deleted in new
chr15	67520191	67520265	ENSG00000259673.5|IQCH-AS1|lncRNA|chr15:67520191:67520265:-	0	-
#Deleted in new
chr15	67670419	67670447	ENSG00000137764.19|MAP2K5|pc|chr15:67670419:67670447:+	0	+
#Deleted in new
chr15	67819703	67819745	ENSG00000188779.10|SKOR1|pc|chr15:67819703:67819745:+	0	+
#Deleted in new
chr15	67873696	67873866	ENSG00000259410.5|AC009292.2|lncRNA|chr15:67873696:67873866:+	0	+
#Partially deleted in new
chr15	68197632	68198603	ENSG00000033800.13|PIAS1|pc|chr15:68197632:68198603:+	0	+
#Partially deleted in new
chr15	68213256	68214388	ENSG00000128973.12|CLN6|pc|chr15:68213256:68214388:-	0	-
#Partially deleted in new
chr15	68213824	68214388	ENSG00000128973.12|CLN6|pc|chr15:68213824:68214388:-	0	-
#Partially deleted in new
chr15	68214167	68215608	ENSG00000128973.12|CLN6|pc|chr15:68214167:68215608:-	0	-
#Deleted in new
chr15	68248353	68248383	ENSG00000128973.12|CLN6|pc|chr15:68248353:68248383:-	0	-
#Deleted in new
chr15	68248353	68248393	ENSG00000128973.12|CLN6|pc|chr15:68248353:68248393:-	0	-
#Deleted in new
chr15	68248353	68248481	ENSG00000128973.12|CLN6|pc|chr15:68248353:68248481:-	0	-
#Deleted in new
chr15	68256689	68257106	ENSG00000128973.12|CLN6|pc|chr15:68256689:68257106:-	0	-
#Deleted in new
chr15	68256689	68257131	ENSG00000128973.12|CLN6|pc|chr15:68256689:68257131:-	0	-
#Deleted in new
chr15	68256696	68256997	ENSG00000128973.12|CLN6|pc|chr15:68256696:68256997:-	0	-
#Deleted in new
chr15	68256696	68257021	ENSG00000128973.12|CLN6|pc|chr15:68256696:68257021:-	0	-
#Deleted in new
chr15	68256696	68257211	ENSG00000128973.12|CLN6|pc|chr15:68256696:68257211:-	0	-
#Partially deleted in new
chr1	56826564	56826920	ENSG00000229913.1|AL360295.1|lncRNA|chr1:56826564:56826920:-	0	-
#Deleted in new
chr15	68267791	68267953	ENSG00000260657.2|AC107871.2|lncRNA|chr15:68267791:68267953:-	0	-
#Deleted in new
chr15	68267791	68268293	ENSG00000260657.2|AC107871.2|lncRNA|chr15:68267791:68268293:-	0	-
#Deleted in new
chr15	68631987	68632341	ENSG00000103647.12|CORO2B|pc|chr15:68631987:68632341:+	0	+
#Deleted in new
chr15	68974728	68974832	ENSG00000137808.12|AC027088.1|lncRNA|chr15:68974728:68974832:+	0	+
#Deleted in new
chr15	68974728	68974832	ENSG00000255346.9|NOX5|pc|chr15:68974728:68974832:+	0	+
#Deleted in new
chr15	69014694	69014785	ENSG00000255346.9|NOX5|pc|chr15:69014694:69014785:+	0	+
#Deleted in new
chr15	69014697	69014785	ENSG00000255346.9|NOX5|pc|chr15:69014697:69014785:+	0	+
#Deleted in new
chr15	69014731	69014785	ENSG00000255346.9|NOX5|pc|chr15:69014731:69014785:+	0	+
#Deleted in new
chr15	69026527	69026651	ENSG00000137808.12|AC027088.1|lncRNA|chr15:69026527:69026651:+	0	+
#Deleted in new
chr15	69026527	69026651	ENSG00000255346.9|NOX5|pc|chr15:69026527:69026651:+	0	+
#Partially deleted in new
chr15	69028214	69028889	ENSG00000137808.12|AC027088.1|lncRNA|chr15:69028214:69028889:+	0	+
#Partially deleted in new
chr15	69028214	69031812	ENSG00000255346.9|NOX5|pc|chr15:69028214:69031812:+	0	+
#Deleted in new
chr15	69031517	69031812	ENSG00000255346.9|NOX5|pc|chr15:69031517:69031812:+	0	+
#Deleted in new
chr15	69031601	69031812	ENSG00000255346.9|NOX5|pc|chr15:69031601:69031812:+	0	+
#Deleted in new
chr15	69031792	69031812	ENSG00000255346.9|NOX5|pc|chr15:69031792:69031812:+	0	+
#Deleted in new
chr15	69033042	69033277	ENSG00000255346.9|NOX5|pc|chr15:69033042:69033277:+	0	+
#Deleted in new
chr15	69035353	69035507	ENSG00000255346.9|NOX5|pc|chr15:69035353:69035507:+	0	+
#Deleted in new
chr15	69035757	69035936	ENSG00000255346.9|NOX5|pc|chr15:69035757:69035936:+	0	+
#Deleted in new
chr15	69037027	69037210	ENSG00000255346.9|NOX5|pc|chr15:69037027:69037210:+	0	+
#Deleted in new
chr15	69037548	69038369	ENSG00000259265.1|AC027088.3|lncRNA|chr15:69037548:69038369:-	0	-
#Deleted in new
chr15	69038856	69038989	ENSG00000255346.9|NOX5|pc|chr15:69038856:69038989:+	0	+
#Deleted in new
chr15	69042662	69042805	ENSG00000255346.9|NOX5|pc|chr15:69042662:69042805:+	0	+
#Deleted in new
chr15	69043514	69043565	ENSG00000259265.1|AC027088.3|lncRNA|chr15:69043514:69043565:-	0	-
#Deleted in new
chr15	69045957	69046309	ENSG00000255346.9|NOX5|pc|chr15:69045957:69046309:+	0	+
#Deleted in new
chr15	69046821	69046866	ENSG00000255346.9|NOX5|pc|chr15:69046821:69046866:+	0	+
#Partially deleted in new
chr15	69047088	69047537	ENSG00000255346.9|NOX5|pc|chr15:69047088:69047537:+	0	+
#Deleted in new
chr15	69047829	69047911	ENSG00000255346.9|NOX5|pc|chr15:69047829:69047911:+	0	+
#Deleted in new
chr15	69048958	69049058	ENSG00000255346.9|NOX5|pc|chr15:69048958:69049058:+	0	+
#Deleted in new
chr15	69056564	69056696	ENSG00000255346.9|NOX5|pc|chr15:69056564:69056696:+	0	+
#Deleted in new
chr15	69056564	69056725	ENSG00000255346.9|NOX5|pc|chr15:69056564:69056725:+	0	+
#Deleted in new
chr15	69056564	69056733	ENSG00000255346.9|NOX5|pc|chr15:69056564:69056733:+	0	+
#Deleted in new
chr15	69056564	69057122	ENSG00000255346.9|NOX5|pc|chr15:69056564:69057122:+	0	+
#Deleted in new
chr15	69056564	69057161	ENSG00000255346.9|NOX5|pc|chr15:69056564:69057161:+	0	+
#Split in new
chr15	69056564	69062743	ENSG00000255346.9|NOX5|pc|chr15:69056564:69062743:+	0	+
#Deleted in new
chr15	69072925	69073190	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69072925:69073190:+	0	+
#Deleted in new
chr15	69072937	69073190	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69072937:69073190:+	0	+
#Deleted in new
chr15	69072939	69073190	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69072939:69073190:+	0	+
#Deleted in new
chr15	69074418	69074674	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69074418:69074674:+	0	+
#Deleted in new
chr15	69074583	69074674	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69074583:69074674:+	0	+
#Deleted in new
chr15	69074583	69074866	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69074583:69074866:+	0	+
#Deleted in new
chr15	69080849	69080965	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69080849:69080965:+	0	+
#Deleted in new
chr15	69080861	69081376	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69080861:69081376:+	0	+
#Deleted in new
chr15	69080869	69080965	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69080869:69080965:+	0	+
#Deleted in new
chr15	69080878	69080965	ENSG00000259222.2|AC027088.2|lncRNA|chr15:69080878:69080965:+	0	+
#Deleted in new
chr15	69081185	69081376	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69081185:69081376:+	0	+
#Deleted in new
chr15	69081229	69081376	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69081229:69081376:+	0	+
#Deleted in new
chr15	69081229	69081376	ENSG00000259222.2|AC027088.2|lncRNA|chr15:69081229:69081376:+	0	+
#Deleted in new
chr15	69081311	69081376	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69081311:69081376:+	0	+
#Deleted in new
chr15	69089537	69089597	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69089537:69089597:+	0	+
#Deleted in new
chr15	69090914	69090988	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69090914:69090988:+	0	+
#Deleted in new
chr15	69090914	69091073	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69090914:69091073:+	0	+
#Deleted in new
chr15	69090914	69091087	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69090914:69091087:+	0	+
#Deleted in new
chr15	69090914	69091114	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69090914:69091114:+	0	+
#Deleted in new
chr15	69090914	69091114	ENSG00000259222.2|AC027088.2|lncRNA|chr15:69090914:69091114:+	0	+
#Deleted in new
chr15	69090914	69091394	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69090914:69091394:+	0	+
#Deleted in new
chr15	69091691	69091759	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69091691:69091759:+	0	+
#Deleted in new
chr15	69091691	69092242	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69091691:69092242:+	0	+
#Deleted in new
chr15	69091691	69092367	ENSG00000212766.9|EWSAT1|lncRNA|chr15:69091691:69092367:+	0	+
#Deleted in new
chr15	69097583	69097673	ENSG00000259222.2|AC027088.2|lncRNA|chr15:69097583:69097673:+	0	+
#Deleted in new
chr15	69196414	69197458	ENSG00000138604.9|GLCE|pc|chr15:69196414:69197458:+	0	+
#Deleted in new
chr15	69278327	69279075	ENSG00000261634.3|AC026992.2|lncRNA|chr15:69278327:69279075:-	0	-
#Deleted in new
chr15	69278674	69278869	ENSG00000259504.2|AC026992.1|lncRNA|chr15:69278674:69278869:+	0	+
#Deleted in new
chr15	69279654	69279754	ENSG00000259504.2|AC026992.1|lncRNA|chr15:69279654:69279754:+	0	+
#Partially deleted in new
chr15	69282962	69284139	ENSG00000261634.3|AC026992.2|lncRNA|chr15:69282962:69284139:-	0	-
#Partially deleted in new
chr15	69284161	69284332	ENSG00000259504.2|AC026992.1|lncRNA|chr15:69284161:69284332:+	0	+
#Deleted in new
chr15	69284223	69284332	ENSG00000259504.2|AC026992.1|lncRNA|chr15:69284223:69284332:+	0	+
#Deleted in new
chr15	69285918	69286286	ENSG00000261634.3|AC026992.2|lncRNA|chr15:69285918:69286286:-	0	-
#Deleted in new
chr15	69288407	69288574	ENSG00000259504.2|AC026992.1|lncRNA|chr15:69288407:69288574:+	0	+
#Deleted in new
chr15	69288421	69288439	ENSG00000261634.3|AC026992.2|lncRNA|chr15:69288421:69288439:-	0	-
#Deleted in new
chr15	69288421	69288529	ENSG00000261634.3|AC026992.2|lncRNA|chr15:69288421:69288529:-	0	-
#Deleted in new
chr15	69295072	69295322	ENSG00000259504.2|AC026992.1|lncRNA|chr15:69295072:69295322:+	0	+
#Deleted in new
chr15	69337340	69337501	ENSG00000137819.13|PAQR5|pc|chr15:69337340:69337501:+	0	+
#Deleted in new
chr15	69337340	69337505	ENSG00000137819.13|PAQR5|pc|chr15:69337340:69337505:+	0	+
#Deleted in new
chr15	69391986	69392149	ENSG00000259645.1|AC027237.4|lncRNA|chr15:69391986:69392149:+	0	+
#Deleted in new
chr15	69400972	69401027	ENSG00000259426.5|AC027237.3|lncRNA|chr15:69400972:69401027:-	0	-
#Deleted in new
chr15	69422899	69423034	ENSG00000137807.13|KIF23|pc|chr15:69422899:69423034:+	0	+
#Deleted in new
chr15	69427369	69427499	ENSG00000137807.13|KIF23|pc|chr15:69427369:69427499:+	0	+
#Partially deleted in new
chr15	69453018	69453721	ENSG00000137818.11|RPLP1|pc|chr15:69453018:69453721:+	0	+
#Partially deleted in new
chr15	69453646	69455287	ENSG00000137818.11|RPLP1|pc|chr15:69453646:69455287:+	0	+
#Partially deleted in new
chr15	69455427	69456194	ENSG00000137818.11|RPLP1|pc|chr15:69455427:69456194:+	0	+
#Deleted in new
chr15	69458521	69458820	ENSG00000259215.1|AC027237.2|lncRNA|chr15:69458521:69458820:-	0	-
#Deleted in new
chr15	69461714	69461806	ENSG00000259215.1|AC027237.2|lncRNA|chr15:69461714:69461806:-	0	-
#Deleted in new
chr15	69464832	69464891	ENSG00000245750.7|DRAIC|lncRNA|chr15:69464832:69464891:+	0	+
#Deleted in new
chr15	69552715	69552756	ENSG00000245750.7|DRAIC|lncRNA|chr15:69552715:69552756:+	0	+
#Deleted in new
chr15	69563589	69563670	ENSG00000245750.7|DRAIC|lncRNA|chr15:69563589:69563670:+	0	+
#Deleted in new
chr15	69563589	69563804	ENSG00000245750.7|DRAIC|lncRNA|chr15:69563589:69563804:+	0	+
#Deleted in new
chr15	69565465	69565790	ENSG00000259457.1|AC100826.1|lncRNA|chr15:69565465:69565790:-	0	-
#Deleted in new
chr15	69570739	69571083	ENSG00000245750.7|DRAIC|lncRNA|chr15:69570739:69571083:+	0	+
#Deleted in new
chr15	69570739	69571440	ENSG00000245750.7|DRAIC|lncRNA|chr15:69570739:69571440:+	0	+
#Partially deleted in new
chr15	69592212	69592313	ENSG00000259641.5|PCAT29|lncRNA|chr15:69592212:69592313:+	0	+
#Deleted in new
chr15	69670129	69670183	ENSG00000259641.5|PCAT29|lncRNA|chr15:69670129:69670183:+	0	+
#Deleted in new
chr15	69681146	69681308	ENSG00000259641.5|PCAT29|lncRNA|chr15:69681146:69681308:+	0	+
#Deleted in new
chr15	69684296	69684442	ENSG00000259641.5|PCAT29|lncRNA|chr15:69684296:69684442:+	0	+
#Deleted in new
chr15	69695666	69695730	ENSG00000259641.5|PCAT29|lncRNA|chr15:69695666:69695730:+	0	+
#Deleted in new
chr15	69695666	69695748	ENSG00000259641.5|PCAT29|lncRNA|chr15:69695666:69695748:+	0	+
#Deleted in new
chr15	69695666	69695750	ENSG00000259641.5|PCAT29|lncRNA|chr15:69695666:69695750:+	0	+
#Deleted in new
chr1	56969579	56969756	ENSG00000236341.1|AL161740.1|lncRNA|chr1:56969579:56969756:+	0	+
#Deleted in new
chr15	69822827	69822856	ENSG00000259309.1|AC021818.1|lncRNA|chr15:69822827:69822856:-	0	-
#Deleted in new
chr15	69840745	69840828	ENSG00000259703.5|LINC00593|lncRNA|chr15:69840745:69840828:+	0	+
#Deleted in new
chr1	56987426	56987564	ENSG00000236341.1|AL161740.1|lncRNA|chr1:56987426:56987564:+	0	+
#Deleted in new
chr15	70503906	70504125	ENSG00000259473.1|LINC02205|lncRNA|chr15:70503906:70504125:-	0	-
#Deleted in new
chr15	70505908	70505928	ENSG00000259473.1|LINC02205|lncRNA|chr15:70505908:70505928:-	0	-
#Deleted in new
chr15	70585874	70586606	ENSG00000280639.1|LINC02204|lncRNA|chr15:70585874:70586606:-	0	-
#Deleted in new
chr15	70615546	70616567	ENSG00000281264.1|SALRNA3|lncRNA|chr15:70615546:70616567:+	0	+
#Partially deleted in new
chr15	70660150	70661696	ENSG00000137831.14|UACA|pc|chr15:70660150:70661696:-	0	-
#Partially deleted in new
chr15	70748931	70749295	ENSG00000259532.1|AC009269.3|lncRNA|chr15:70748931:70749295:+	0	+
#Deleted in new
chr15	70754069	70754177	ENSG00000259532.1|AC009269.3|lncRNA|chr15:70754069:70754177:+	0	+
#Partially deleted in new
chr15	70778781	70778868	ENSG00000259624.1|AC009269.4|lncRNA|chr15:70778781:70778868:-	0	-
#Deleted in new
chr15	70848882	70849098	ENSG00000259744.1|AC009269.5|lncRNA|chr15:70848882:70849098:-	0	-
#Deleted in new
chr15	70849231	70849770	ENSG00000259744.1|AC009269.5|lncRNA|chr15:70849231:70849770:-	0	-
#Deleted in new
chr15	70872907	70873223	ENSG00000137821.11|LRRC49|pc|chr15:70872907:70873223:+	0	+
#Deleted in new
chr15	70881341	70882650	ENSG00000129028.8|THAP10|pc|chr15:70881341:70882650:-	0	-
#Deleted in new
chr15	70882299	70882650	ENSG00000129028.8|THAP10|pc|chr15:70882299:70882650:-	0	-
#Deleted in new
chr15	70882760	70882908	ENSG00000129028.8|THAP10|pc|chr15:70882760:70882908:-	0	-
#Deleted in new
chr15	70907449	70907496	ENSG00000137821.11|LRRC49|pc|chr15:70907449:70907496:+	0	+
#Deleted in new
chr15	70907844	70907991	ENSG00000137821.11|LRRC49|pc|chr15:70907844:70907991:+	0	+
#Deleted in new
chr15	70908603	70908676	ENSG00000137821.11|LRRC49|pc|chr15:70908603:70908676:+	0	+
#Deleted in new
chr15	71113536	71113763	ENSG00000225362.8|CT62|pc|chr15:71113536:71113763:-	0	-
#Deleted in new
chr15	71113634	71113763	ENSG00000225362.8|CT62|pc|chr15:71113634:71113763:-	0	-
#Partially deleted in new
chr15	71147649	71147790	ENSG00000259964.6|THSD4-AS1|lncRNA|chr15:71147649:71147790:-	0	-
#Deleted in new
chr15	71167007	71167189	ENSG00000259964.6|THSD4-AS1|lncRNA|chr15:71167007:71167189:-	0	-
#Deleted in new
chr15	71167024	71167189	ENSG00000259964.6|THSD4-AS1|lncRNA|chr15:71167024:71167189:-	0	-
#Deleted in new
chr15	71172151	71172157	ENSG00000259964.6|THSD4-AS1|lncRNA|chr15:71172151:71172157:-	0	-
#Deleted in new
chr15	71183105	71183216	ENSG00000259964.6|THSD4-AS1|lncRNA|chr15:71183105:71183216:-	0	-
#Partially deleted in new
chr15	71348151	71348471	ENSG00000260586.1|AC064799.2|lncRNA|chr15:71348151:71348471:+	0	+
#Deleted in new
chr15	71766698	71767651	ENSG00000187720.14|THSD4|pc|chr15:71766698:71767651:+	0	+
#Deleted in new
chr15	71792637	71792722	ENSG00000278570.4|NR2E3|pc|chr15:71792637:71792722:+	0	+
#Partially deleted in new
chr15	71818395	71818524	ENSG00000260037.5|AC104938.1|lncRNA|chr15:71818395:71818524:+	0	+
#Partially deleted in new
chr15	71818413	71818524	ENSG00000260037.5|AC104938.1|lncRNA|chr15:71818413:71818524:+	0	+
#Deleted in new
chr15	71818489	71818524	ENSG00000260037.5|AC104938.1|lncRNA|chr15:71818489:71818524:+	0	+
#Deleted in new
chr15	71818654	71818752	ENSG00000260037.5|AC104938.1|lncRNA|chr15:71818654:71818752:+	0	+
#Deleted in new
chr15	71953643	71953692	ENSG00000066933.15|MYO9A|pc|chr15:71953643:71953692:-	0	-
#Deleted in new
chr15	71972205	71972317	ENSG00000261632.1|AC022872.1|lncRNA|chr15:71972205:71972317:+	0	+
#Deleted in new
chr15	71993692	71993788	ENSG00000261632.1|AC022872.1|lncRNA|chr15:71993692:71993788:+	0	+
#Deleted in new
chr15	71999012	71999080	ENSG00000261632.1|AC022872.1|lncRNA|chr15:71999012:71999080:+	0	+
#Deleted in new
chr15	72036514	72036689	ENSG00000261632.1|AC022872.1|lncRNA|chr15:72036514:72036689:+	0	+
#Deleted in new
chr15	72039935	72040265	ENSG00000261632.1|AC022872.1|lncRNA|chr15:72039935:72040265:+	0	+
#Deleted in new
chr15	72139311	72139435	ENSG00000166192.14|SENP8|pc|chr15:72139311:72139435:+	0	+
#Partially deleted in new
chr15	72173564	72173927	ENSG00000175318.11|GRAMD2A|pc|chr15:72173564:72173927:-	0	-
#Deleted in new
chr15	72175708	72175827	ENSG00000175318.11|GRAMD2A|pc|chr15:72175708:72175827:-	0	-
#Deleted in new
chr15	72176021	72176098	ENSG00000175318.11|GRAMD2A|pc|chr15:72176021:72176098:-	0	-
#Deleted in new
chr15	72278866	72279031	ENSG00000261460.1|AC009690.2|lncRNA|chr15:72278866:72279031:+	0	+
#Partially deleted in new
chr15	72353690	72355624	ENSG00000213614.9|HEXA|pc|chr15:72353690:72355624:-	0	-
#Deleted in new
chr15	72355909	72355976	ENSG00000213614.9|HEXA|pc|chr15:72355909:72355976:-	0	-
#Deleted in new
chr15	72376112	72378788	ENSG00000260339.1|HEXA-AS1|lncRNA|chr15:72376112:72378788:+	0	+
#Deleted in new
chr15	72376274	72376420	ENSG00000213614.9|HEXA|pc|chr15:72376274:72376420:-	0	-
#Deleted in new
chr15	72409373	72409516	ENSG00000261423.1|TMEM202-AS1|lncRNA|chr15:72409373:72409516:-	0	-
#Deleted in new
chr15	72421424	72421601	ENSG00000261423.1|TMEM202-AS1|lncRNA|chr15:72421424:72421601:-	0	-
#Deleted in new
chr15	72572262	72572380	ENSG00000166233.14|ARIH1|pc|chr15:72572262:72572380:+	0	+
#Partially deleted in new
chr15	72583207	72602985	ENSG00000166233.14|ARIH1|pc|chr15:72583207:72602985:+	0	+
#Partially deleted in new
chr15	72589690	72591845	ENSG00000260534.1|AC100827.3|lncRNA|chr15:72589690:72591845:+	0	+
#Deleted in new
chr15	72615809	72618250	ENSG00000260672.1|AC100827.4|lncRNA|chr15:72615809:72618250:+	0	+
#Deleted in new
chr15	72616129	72616247	ENSG00000259783.5|LINC02259|lncRNA|chr15:72616129:72616247:-	0	-
#Deleted in new
chr15	72633337	72633406	ENSG00000259783.5|LINC02259|lncRNA|chr15:72633337:72633406:-	0	-
#Deleted in new
chr15	72697991	72698037	ENSG00000140463.13|BBS4|pc|chr15:72697991:72698037:+	0	+
#Deleted in new
chr15	72704423	72704481	ENSG00000140463.13|BBS4|pc|chr15:72704423:72704481:+	0	+
#Deleted in new
chr15	72787421	72787593	ENSG00000260898.5|ADPGK-AS1|lncRNA|chr15:72787421:72787593:+	0	+
#Deleted in new
chr15	72792555	72792963	ENSG00000260898.5|ADPGK-AS1|lncRNA|chr15:72792555:72792963:+	0	+
#Deleted in new
chr15	72798003	72798199	ENSG00000260898.5|ADPGK-AS1|lncRNA|chr15:72798003:72798199:+	0	+
#Deleted in new
chr15	73221692	73221735	ENSG00000067141.16|NEO1|pc|chr15:73221692:73221735:+	0	+
#Deleted in new
chr15	73221918	73222087	ENSG00000067141.16|NEO1|pc|chr15:73221918:73222087:+	0	+
#Deleted in new
chr15	73255779	73256109	ENSG00000259528.1|AC068397.1|lncRNA|chr15:73255779:73256109:-	0	-
#Deleted in new
chr15	73335259	73335332	ENSG00000259650.1|AC068397.2|lncRNA|chr15:73335259:73335332:+	0	+
#Deleted in new
chr15	73335275	73335332	ENSG00000259650.1|AC068397.2|lncRNA|chr15:73335275:73335332:+	0	+
#Partially deleted in new
chr15	73341012	73341065	ENSG00000259650.1|AC068397.2|lncRNA|chr15:73341012:73341065:+	0	+
#Deleted in new
chr15	73599488	73599586	ENSG00000156642.16|NPTN|pc|chr15:73599488:73599586:-	0	-
#Deleted in new
chr15	73697595	73697702	ENSG00000103855.17|CD276|pc|chr15:73697595:73697702:+	0	+
#Partially deleted in new
chr15	73713841	73714053	ENSG00000103855.17|CD276|pc|chr15:73713841:73714053:+	0	+
#Partially deleted in new
chr15	73730047	73731711	ENSG00000276807.1|AC022188.1|lncRNA|chr15:73730047:73731711:-	0	-
#Deleted in new
chr1	57386575	57386722	ENSG00000227935.1|AL390243.1|lncRNA|chr1:57386575:57386722:+	0	+
#Deleted in new
chr1	57386889	57387450	ENSG00000227935.1|AL390243.1|lncRNA|chr1:57386889:57387450:+	0	+
#Deleted in new
chr15	73916303	73916447	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73916303:73916447:-	0	-
#Deleted in new
chr15	73916342	73916447	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73916342:73916447:-	0	-
#Deleted in new
chr15	73917467	73919383	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73917467:73919383:-	0	-
#Deleted in new
chr15	73917595	73919383	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73917595:73919383:-	0	-
#Deleted in new
chr15	73918760	73919383	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73918760:73919383:-	0	-
#Deleted in new
chr15	73919027	73919383	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73919027:73919383:-	0	-
#Deleted in new
chr15	73919039	73920038	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73919039:73920038:-	0	-
#Deleted in new
chr15	73919058	73919383	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73919058:73919383:-	0	-
#Deleted in new
chr15	73919154	73919383	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73919154:73919383:-	0	-
#Deleted in new
chr15	73919160	73919383	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73919160:73919383:-	0	-
#Deleted in new
chr15	73919202	73919383	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73919202:73919383:-	0	-
#Deleted in new
chr15	73919837	73919870	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73919837:73919870:-	0	-
#Deleted in new
chr15	73919837	73920038	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73919837:73920038:-	0	-
#Deleted in new
chr15	73919959	73920038	ENSG00000261801.5|LOXL1-AS1|lncRNA|chr15:73919959:73920038:-	0	-
#Partially deleted in new
chr15	74024856	74028442	ENSG00000140464.19|PML|pc|chr15:74024856:74028442:+	0	+
#Partially deleted in new
chr15	74036006	74036394	ENSG00000140464.19|PML|pc|chr15:74036006:74036394:+	0	+
#Deleted in new
chr15	74036034	74036122	ENSG00000140464.19|PML|pc|chr15:74036034:74036122:+	0	+
#Duplicated in new
chr15	74070645	74071037	ENSG00000159289.6|GOLGA6A|pc|chr15:74070645:74071037:-	0	-
#Deleted in new
chr15	74103845	74103914	ENSG00000167178.15|ISLR2|pc|chr15:74103845:74103914:+	0	+
#Deleted in new
chr15	74138315	74138540	ENSG00000167178.15|ISLR2|pc|chr15:74138315:74138540:+	0	+
#Deleted in new
chr15	74213267	74213488	ENSG00000140481.14|CCDC33|pc|chr15:74213267:74213488:+	0	+
#Deleted in new
chr15	74350165	74350254	ENSG00000140459.17|CYP11A1|pc|chr15:74350165:74350254:-	0	-
#Deleted in new
chr15	74359522	74359603	ENSG00000140459.17|CYP11A1|pc|chr15:74359522:74359603:-	0	-
#Deleted in new
chr15	74365434	74365505	ENSG00000261821.2|AC090826.2|lncRNA|chr15:74365434:74365505:+	0	+
#Deleted in new
chr15	74365661	74366032	ENSG00000261821.2|AC090826.2|lncRNA|chr15:74365661:74366032:+	0	+
#Deleted in new
chr15	74365715	74366158	ENSG00000140459.17|CYP11A1|pc|chr15:74365715:74366158:-	0	-
#Deleted in new
chr15	74365715	74366178	ENSG00000140459.17|CYP11A1|pc|chr15:74365715:74366178:-	0	-
#Deleted in new
chr15	74365715	74366189	ENSG00000140459.17|CYP11A1|pc|chr15:74365715:74366189:-	0	-
#Deleted in new
chr15	74365715	74366206	ENSG00000140459.17|CYP11A1|pc|chr15:74365715:74366206:-	0	-
#Deleted in new
chr15	74466035	74466130	ENSG00000247240.7|UBL7-AS1|lncRNA|chr15:74466035:74466130:+	0	+
#Deleted in new
chr15	74479043	74479265	ENSG00000247240.7|UBL7-AS1|lncRNA|chr15:74479043:74479265:+	0	+
#Deleted in new
chr15	74479059	74479222	ENSG00000247240.7|UBL7-AS1|lncRNA|chr15:74479059:74479222:+	0	+
#Deleted in new
chr15	74479059	74479278	ENSG00000247240.7|UBL7-AS1|lncRNA|chr15:74479059:74479278:+	0	+
#Deleted in new
chr15	74480620	74480914	ENSG00000247240.7|UBL7-AS1|lncRNA|chr15:74480620:74480914:+	0	+
#Partially deleted in new
chr15	74481204	74481288	ENSG00000247240.7|UBL7-AS1|lncRNA|chr15:74481204:74481288:+	0	+
#Deleted in new
chr15	74489601	74489703	ENSG00000261775.1|AC012435.2|lncRNA|chr15:74489601:74489703:+	0	+
#Deleted in new
chr15	74490960	74491035	ENSG00000261775.1|AC012435.2|lncRNA|chr15:74490960:74491035:+	0	+
#Deleted in new
chr15	74491463	74491582	ENSG00000261775.1|AC012435.2|lncRNA|chr15:74491463:74491582:+	0	+
#Deleted in new
chr15	74516894	74516959	ENSG00000261775.1|AC012435.2|lncRNA|chr15:74516894:74516959:+	0	+
#Deleted in new
chr15	74598499	74599537	ENSG00000179335.18|CLK3|pc|chr15:74598499:74599537:+	0	+
#Deleted in new
chr15	74598918	74599397	ENSG00000275527.1|AC100835.2|lncRNA|chr15:74598918:74599397:-	0	-
#Deleted in new
chr15	74603166	74603246	ENSG00000179335.18|CLK3|pc|chr15:74603166:74603246:+	0	+
#Deleted in new
chr15	74605581	74605733	ENSG00000179335.18|CLK3|pc|chr15:74605581:74605733:+	0	+
#Deleted in new
chr15	74606242	74606415	ENSG00000179335.18|CLK3|pc|chr15:74606242:74606415:+	0	+
#Deleted in new
chr15	74608276	74608727	ENSG00000179335.18|CLK3|pc|chr15:74608276:74608727:+	0	+
#Deleted in new
chr15	74608371	74608426	ENSG00000179335.18|CLK3|pc|chr15:74608371:74608426:+	0	+
#Deleted in new
chr15	74635097	74635216	ENSG00000179335.18|CLK3|pc|chr15:74635097:74635216:+	0	+
#Deleted in new
chr15	74639436	74639716	ENSG00000179335.18|CLK3|pc|chr15:74639436:74639716:+	0	+
#Deleted in new
chr15	74676940	74677022	ENSG00000179151.11|EDC3|pc|chr15:74676940:74677022:-	0	-
#Deleted in new
chr15	74679801	74679925	ENSG00000179151.11|EDC3|pc|chr15:74679801:74679925:-	0	-
#Deleted in new
chr15	74687090	74687179	ENSG00000179151.11|EDC3|pc|chr15:74687090:74687179:-	0	-
#Deleted in new
chr15	74687129	74687179	ENSG00000179151.11|EDC3|pc|chr15:74687129:74687179:-	0	-
#Deleted in new
chr15	74692885	74693018	ENSG00000179151.11|EDC3|pc|chr15:74692885:74693018:-	0	-
#Deleted in new
chr15	74695325	74695614	ENSG00000179151.11|EDC3|pc|chr15:74695325:74695614:-	0	-
#Deleted in new
chr15	74695325	74695701	ENSG00000179151.11|EDC3|pc|chr15:74695325:74695701:-	0	-
#Deleted in new
chr15	74695369	74695662	ENSG00000179151.11|EDC3|pc|chr15:74695369:74695662:-	0	-
#Deleted in new
chr15	74695422	74695673	ENSG00000179151.11|EDC3|pc|chr15:74695422:74695673:-	0	-
#Deleted in new
chr15	74695879	74695940	ENSG00000179151.11|EDC3|pc|chr15:74695879:74695940:-	0	-
#Deleted in new
chr15	74695879	74695976	ENSG00000179151.11|EDC3|pc|chr15:74695879:74695976:-	0	-
#Deleted in new
chr15	74695879	74695987	ENSG00000179151.11|EDC3|pc|chr15:74695879:74695987:-	0	-
#Deleted in new
chr15	74695879	74696000	ENSG00000179151.11|EDC3|pc|chr15:74695879:74696000:-	0	-
#Deleted in new
chr15	74695879	74696007	ENSG00000179151.11|EDC3|pc|chr15:74695879:74696007:-	0	-
#Deleted in new
chr15	74695879	74696012	ENSG00000179151.11|EDC3|pc|chr15:74695879:74696012:-	0	-
#Deleted in new
chr15	74695879	74696020	ENSG00000179151.11|EDC3|pc|chr15:74695879:74696020:-	0	-
#Deleted in new
chr15	74695879	74696024	ENSG00000179151.11|EDC3|pc|chr15:74695879:74696024:-	0	-
#Deleted in new
chr15	74695879	74696029	ENSG00000179151.11|EDC3|pc|chr15:74695879:74696029:-	0	-
#Deleted in new
chr15	74695879	74696043	ENSG00000179151.11|EDC3|pc|chr15:74695879:74696043:-	0	-
#Deleted in new
chr15	74696185	74696292	ENSG00000179151.11|EDC3|pc|chr15:74696185:74696292:-	0	-
#Partially deleted in new
chr15	74754790	74756202	ENSG00000140505.6|CYP1A2|pc|chr15:74754790:74756202:+	0	+
#Deleted in new
chr15	74793045	74793248	ENSG00000103653.16|CSK|pc|chr15:74793045:74793248:+	0	+
#Deleted in new
chr15	74890978	74891035	ENSG00000178802.17|MPI|pc|chr15:74890978:74891035:+	0	+
#Partially deleted in new
chr15	74919790	74920442	ENSG00000178741.11|COX5A|pc|chr15:74919790:74920442:-	0	-
#Deleted in new
chr15	75007587	75007728	ENSG00000198794.11|SCAMP5|pc|chr15:75007587:75007728:+	0	+
#Deleted in new
chr15	75007660	75007728	ENSG00000198794.11|SCAMP5|pc|chr15:75007660:75007728:+	0	+
#Deleted in new
chr15	75009890	75009940	ENSG00000198794.11|SCAMP5|pc|chr15:75009890:75009940:+	0	+
#Deleted in new
chr15	75059643	75059746	ENSG00000138621.11|PPCDC|pc|chr15:75059643:75059746:+	0	+
#Partially deleted in new
chr15	75117119	75117462	ENSG00000138621.11|PPCDC|pc|chr15:75117119:75117462:+	0	+
#Deleted in new
chr15	75198865	75199161	ENSG00000167173.18|C15orf39|pc|chr15:75198865:75199161:+	0	+
#Deleted in new
chr15	75198886	75199161	ENSG00000167173.18|C15orf39|pc|chr15:75198886:75199161:+	0	+
#Deleted in new
chr15	75198891	75199161	ENSG00000167173.18|C15orf39|pc|chr15:75198891:75199161:+	0	+
#Partially deleted in new
chr15	75340828	75341198	ENSG00000140365.15|COMMD4|pc|chr15:75340828:75341198:+	0	+
#Partially deleted in new
chr15	75340828	75343224	ENSG00000140365.15|COMMD4|pc|chr15:75340828:75343224:+	0	+
#Deleted in new
chr15	75346743	75347161	ENSG00000275645.1|AC068338.3|lncRNA|chr15:75346743:75347161:-	0	-
#Deleted in new
chr15	75346954	75347110	ENSG00000140398.13|NEIL1|pc|chr15:75346954:75347110:+	0	+
#Deleted in new
chr15	75347012	75347110	ENSG00000140398.13|NEIL1|pc|chr15:75347012:75347110:+	0	+
#Deleted in new
chr15	75347037	75347110	ENSG00000140398.13|NEIL1|pc|chr15:75347037:75347110:+	0	+
#Deleted in new
chr15	75347052	75347110	ENSG00000140398.13|NEIL1|pc|chr15:75347052:75347110:+	0	+
#Deleted in new
chr15	75347089	75347110	ENSG00000140398.13|NEIL1|pc|chr15:75347089:75347110:+	0	+
#Deleted in new
chr15	75351300	75351376	ENSG00000140398.13|NEIL1|pc|chr15:75351300:75351376:+	0	+
#Deleted in new
chr15	75436345	75436443	ENSG00000169375.15|SIN3A|pc|chr15:75436345:75436443:-	0	-
#Deleted in new
chr15	75443592	75443707	ENSG00000169375.15|SIN3A|pc|chr15:75443592:75443707:-	0	-
#Deleted in new
chr15	75446228	75446395	ENSG00000169375.15|SIN3A|pc|chr15:75446228:75446395:-	0	-
#Deleted in new
chr15	75447652	75447743	ENSG00000169375.15|SIN3A|pc|chr15:75447652:75447743:-	0	-
#Deleted in new
chr15	75448052	75448173	ENSG00000169375.15|SIN3A|pc|chr15:75448052:75448173:-	0	-
#Partially deleted in new
chr15	75513190	75513438	ENSG00000169410.9|PTPN9|pc|chr15:75513190:75513438:-	0	-
#Deleted in new
chr15	75622341	75622408	ENSG00000169371.13|SNUPN|pc|chr15:75622341:75622408:-	0	-
#Deleted in new
chr15	75622341	75622490	ENSG00000169371.13|SNUPN|pc|chr15:75622341:75622490:-	0	-
#Deleted in new
chr15	75624714	75624935	ENSG00000169371.13|SNUPN|pc|chr15:75624714:75624935:-	0	-
#Deleted in new
chr15	75624714	75625179	ENSG00000169371.13|SNUPN|pc|chr15:75624714:75625179:-	0	-
#Deleted in new
chr15	75624792	75625198	ENSG00000260235.1|AC105020.3|lncRNA|chr15:75624792:75625198:+	0	+
#Deleted in new
chr15	75625335	75625638	ENSG00000169371.13|SNUPN|pc|chr15:75625335:75625638:-	0	-
#Deleted in new
chr15	75625335	75625663	ENSG00000169371.13|SNUPN|pc|chr15:75625335:75625663:-	0	-
#Deleted in new
chr15	75625335	75625688	ENSG00000169371.13|SNUPN|pc|chr15:75625335:75625688:-	0	-
#Deleted in new
chr15	75625335	75625693	ENSG00000169371.13|SNUPN|pc|chr15:75625335:75625693:-	0	-
#Deleted in new
chr15	75625536	75625690	ENSG00000260235.1|AC105020.3|lncRNA|chr15:75625536:75625690:+	0	+
#Deleted in new
chr15	75625665	75625794	ENSG00000169371.13|SNUPN|pc|chr15:75625665:75625794:-	0	-
#Deleted in new
chr15	75625665	75625815	ENSG00000169371.13|SNUPN|pc|chr15:75625665:75625815:-	0	-
#Deleted in new
chr15	75625770	75626159	ENSG00000169371.13|SNUPN|pc|chr15:75625770:75626159:-	0	-
#Deleted in new
chr15	75626238	75626469	ENSG00000169371.13|SNUPN|pc|chr15:75626238:75626469:-	0	-
#Deleted in new
chr15	75636138	75636512	ENSG00000260206.1|AC105020.2|lncRNA|chr15:75636138:75636512:+	0	+
#Deleted in new
chr15	75637894	75637897	ENSG00000260206.1|AC105020.2|lncRNA|chr15:75637894:75637897:+	0	+
#Deleted in new
chr15	75641041	75641218	ENSG00000177971.8|IMP3|pc|chr15:75641041:75641218:-	0	-
#Deleted in new
chr15	75741721	75741775	ENSG00000260288.3|AC019294.2|lncRNA|chr15:75741721:75741775:+	0	+
#Deleted in new
chr15	75758412	75758732	ENSG00000260288.3|AC019294.2|lncRNA|chr15:75758412:75758732:+	0	+
#Deleted in new
chr15	75758539	75760136	ENSG00000260288.3|AC019294.2|lncRNA|chr15:75758539:75760136:+	0	+
#Deleted in new
chr15	75758565	75758627	ENSG00000260288.3|AC019294.2|lncRNA|chr15:75758565:75758627:+	0	+
#Partially deleted in new
chr15	75762982	75763321	ENSG00000260288.3|AC019294.2|lncRNA|chr15:75762982:75763321:+	0	+
#Partially deleted in new
chr15	75904124	75904252	ENSG00000167196.13|FBXO22|pc|chr15:75904124:75904252:+	0	+
#Deleted in new
chr15	75910323	75910429	ENSG00000167196.13|FBXO22|pc|chr15:75910323:75910429:+	0	+
#Partially deleted in new
chr15	75932684	75942510	ENSG00000167196.13|FBXO22|pc|chr15:75932684:75942510:+	0	+
#Deleted in new
chr15	75935968	75936310	ENSG00000169752.16|NRG4|pc|chr15:75935968:75936310:-	0	-
#Deleted in new
chr15	75936263	75936310	ENSG00000169752.16|NRG4|pc|chr15:75936263:75936310:-	0	-
#Partially deleted in new
chr15	75940935	75943654	ENSG00000169752.16|NRG4|pc|chr15:75940935:75943654:-	0	-
#Partially deleted in new
chr15	75941972	75943654	ENSG00000169752.16|NRG4|pc|chr15:75941972:75943654:-	0	-
#Deleted in new
chr15	75942637	75942772	ENSG00000169752.16|NRG4|pc|chr15:75942637:75942772:-	0	-
#Partially deleted in new
chr15	75943008	75943654	ENSG00000169752.16|NRG4|pc|chr15:75943008:75943654:-	0	-
#Deleted in new
chr15	75943043	75943483	ENSG00000169752.16|NRG4|pc|chr15:75943043:75943483:-	0	-
#Partially deleted in new
chr15	75943165	75943654	ENSG00000169752.16|NRG4|pc|chr15:75943165:75943654:-	0	-
#Partially deleted in new
chr15	75943233	75943654	ENSG00000169752.16|NRG4|pc|chr15:75943233:75943654:-	0	-
#Deleted in new
chr15	75959021	75959140	ENSG00000169752.16|NRG4|pc|chr15:75959021:75959140:-	0	-
#Deleted in new
chr15	75959073	75959140	ENSG00000169752.16|NRG4|pc|chr15:75959073:75959140:-	0	-
#Deleted in new
chr15	75971165	75971248	ENSG00000169752.16|NRG4|pc|chr15:75971165:75971248:-	0	-
#Deleted in new
chr15	76005739	76005809	ENSG00000169752.16|NRG4|pc|chr15:76005739:76005809:-	0	-
#Deleted in new
chr15	76052066	76052177	ENSG00000169752.16|NRG4|pc|chr15:76052066:76052177:-	0	-
#Deleted in new
chr15	76052097	76052177	ENSG00000169752.16|NRG4|pc|chr15:76052097:76052177:-	0	-
#Partially deleted in new
chr15	76112545	76114203	ENSG00000169758.12|TMEM266|pc|chr15:76112545:76114203:+	0	+
#Partially deleted in new
chr15	76228775	76229121	ENSG00000169758.12|TMEM266|pc|chr15:76228775:76229121:+	0	+
#Deleted in new
chr15	76284364	76284460	ENSG00000140374.15|ETFA|pc|chr15:76284364:76284460:-	0	-
#Deleted in new
chr15	76284804	76284927	ENSG00000140374.15|ETFA|pc|chr15:76284804:76284927:-	0	-
#Deleted in new
chr15	76309931	76310064	ENSG00000140374.15|ETFA|pc|chr15:76309931:76310064:-	0	-
#Deleted in new
chr15	76498341	76498597	ENSG00000140386.12|SCAPER|pc|chr15:76498341:76498597:-	0	-
#Deleted in new
chr15	76567269	76567405	ENSG00000140386.12|SCAPER|pc|chr15:76567269:76567405:-	0	-
#Deleted in new
chr15	76576858	76576951	ENSG00000140386.12|SCAPER|pc|chr15:76576858:76576951:-	0	-
#Deleted in new
chr15	76576858	76576985	ENSG00000140386.12|SCAPER|pc|chr15:76576858:76576985:-	0	-
#Deleted in new
chr15	76774367	76774409	ENSG00000140386.12|SCAPER|pc|chr15:76774367:76774409:-	0	-
#Deleted in new
chr15	76793232	76793391	ENSG00000140386.12|SCAPER|pc|chr15:76793232:76793391:-	0	-
#Deleted in new
chr15	76797219	76797543	ENSG00000140386.12|SCAPER|pc|chr15:76797219:76797543:-	0	-
#Deleted in new
chr15	76797539	76797608	ENSG00000140386.12|SCAPER|pc|chr15:76797539:76797608:-	0	-
#Deleted in new
chr15	76855809	76855876	ENSG00000140386.12|SCAPER|pc|chr15:76855809:76855876:-	0	-
#Deleted in new
chr15	76861844	76861944	ENSG00000140386.12|SCAPER|pc|chr15:76861844:76861944:-	0	-
#Deleted in new
chr15	76941636	76941690	ENSG00000117906.13|RCN2|pc|chr15:76941636:76941690:+	0	+
#Deleted in new
chr15	76993358	76993400	ENSG00000140368.12|PSTPIP1|pc|chr15:76993358:76993400:+	0	+
#Deleted in new
chr15	76999460	76999614	ENSG00000140368.12|PSTPIP1|pc|chr15:76999460:76999614:+	0	+
#Deleted in new
chr15	77023569	77023667	ENSG00000140368.12|PSTPIP1|pc|chr15:77023569:77023667:+	0	+
#Deleted in new
chr15	77255448	77255552	ENSG00000173517.10|PEAK1|pc|chr15:77255448:77255552:-	0	-
#Partially deleted in new
chr15	77283761	77284030	ENSG00000173517.10|PEAK1|pc|chr15:77283761:77284030:-	0	-
#Partially deleted in new
chr15	77283882	77284030	ENSG00000173517.10|PEAK1|pc|chr15:77283882:77284030:-	0	-
#Partially deleted in new
chr15	77284957	77285078	ENSG00000173517.10|PEAK1|pc|chr15:77284957:77285078:-	0	-
#Partially deleted in new
chr15	77284957	77285100	ENSG00000173517.10|PEAK1|pc|chr15:77284957:77285100:-	0	-
#Partially deleted in new
chr15	77788071	77788145	ENSG00000259213.1|AC105133.1|lncRNA|chr15:77788071:77788145:+	0	+
#Deleted in new
chr15	77954074	77954344	ENSG00000261403.1|AC104758.5|lncRNA|chr15:77954074:77954344:-	0	-
#Deleted in new
chr15	77963353	77963654	ENSG00000261403.1|AC104758.5|lncRNA|chr15:77963353:77963654:-	0	-
#Deleted in new
chr15	78066025	78066123	ENSG00000167202.11|TBC1D2B|pc|chr15:78066025:78066123:-	0	-
#Partially deleted in new
chr15	78131497	78131631	ENSG00000166411.13|IDH3A|pc|chr15:78131497:78131631:+	0	+
#Deleted in new
chr15	78141242	78143173	ENSG00000260988.1|AC090260.1|lncRNA|chr15:78141242:78143173:+	0	+
#Deleted in new
chr15	78146315	78146590	ENSG00000166411.13|IDH3A|pc|chr15:78146315:78146590:+	0	+
#Deleted in new
chr15	78151288	78151544	ENSG00000166411.13|IDH3A|pc|chr15:78151288:78151544:+	0	+
#Deleted in new
chr15	78154434	78154819	ENSG00000166411.13|IDH3A|pc|chr15:78154434:78154819:+	0	+
#Deleted in new
chr15	78178962	78178980	ENSG00000103740.9|ACSBG1|pc|chr15:78178962:78178980:-	0	-
#Deleted in new
chr15	78226454	78226605	ENSG00000103740.9|ACSBG1|pc|chr15:78226454:78226605:-	0	-
#Deleted in new
chr15	78245268	78245688	ENSG00000103740.9|ACSBG1|pc|chr15:78245268:78245688:-	0	-
#Deleted in new
chr15	78250501	78250773	ENSG00000259708.1|AC090607.3|lncRNA|chr15:78250501:78250773:-	0	-
#Partially deleted in new
chr15	78299700	78299924	ENSG00000277482.1|AC090607.5|lncRNA|chr15:78299700:78299924:+	0	+
#Deleted in new
chr15	78470719	78470948	ENSG00000136381.12|IREB2|pc|chr15:78470719:78470948:+	0	+
#Deleted in new
chr15	78480056	78480260	ENSG00000259474.1|AC027228.1|lncRNA|chr15:78480056:78480260:-	0	-
#Deleted in new
chr15	78481699	78481820	ENSG00000259474.1|AC027228.1|lncRNA|chr15:78481699:78481820:-	0	-
#Deleted in new
chr15	78518587	78518773	ENSG00000188266.13|HYKK|pc|chr15:78518587:78518773:+	0	+
#Partially deleted in new
chr15	78527379	78528801	ENSG00000188266.13|HYKK|pc|chr15:78527379:78528801:+	0	+
#Deleted in new
chr15	78537299	78537372	ENSG00000188266.13|HYKK|pc|chr15:78537299:78537372:+	0	+
#Deleted in new
chr15	78537680	78538946	ENSG00000279373.1|AC027228.3|lncRNA|chr15:78537680:78538946:+	0	+
#Deleted in new
chr15	78593913	78594011	ENSG00000080644.15|CHRNA3|pc|chr15:78593913:78594011:-	0	-
#Deleted in new
chr15	78599891	78600013	ENSG00000279421.1|AC067863.3|lncRNA|chr15:78599891:78600013:-	0	-
#Deleted in new
chr15	78607440	78607524	ENSG00000080644.15|CHRNA3|pc|chr15:78607440:78607524:-	0	-
#Deleted in new
chr1	57862433	57862670	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862433:57862670:+	0	+
#Deleted in new
chr1	57862433	57862778	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862433:57862778:+	0	+
#Deleted in new
chr1	57862433	57862800	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862433:57862800:+	0	+
#Deleted in new
chr1	57862433	57862803	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862433:57862803:+	0	+
#Deleted in new
chr1	57862454	57862519	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862454:57862519:+	0	+
#Deleted in new
chr1	57862454	57862927	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862454:57862927:+	0	+
#Deleted in new
chr1	57862454	57863040	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862454:57863040:+	0	+
#Deleted in new
chr1	57862455	57862519	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862455:57862519:+	0	+
#Deleted in new
chr1	57862455	57862803	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862455:57862803:+	0	+
#Deleted in new
chr1	57862455	57863063	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862455:57863063:+	0	+
#Deleted in new
chr1	57862455	57863215	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862455:57863215:+	0	+
#Deleted in new
chr1	57862776	57862927	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862776:57862927:+	0	+
#Deleted in new
chr1	57862776	57863040	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862776:57863040:+	0	+
#Partially deleted in new
chr15	78627884	78628193	ENSG00000259555.1|AC067863.2|lncRNA|chr15:78627884:78628193:+	0	+
#Deleted in new
chr1	57862834	57863040	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57862834:57863040:+	0	+
#Deleted in new
chr1	57863014	57863040	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57863014:57863040:+	0	+
#Deleted in new
chr1	57864706	57864824	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57864706:57864824:+	0	+
#Partially deleted in new
chr1	57864706	57864932	ENSG00000226759.7|DAB1-AS1|lncRNA|chr1:57864706:57864932:+	0	+
#Deleted in new
chr15	78649378	78649439	ENSG00000117971.11|CHRNB4|pc|chr15:78649378:78649439:-	0	-
#Deleted in new
chr15	78655543	78655663	ENSG00000117971.11|CHRNB4|pc|chr15:78655543:78655663:-	0	-
#Deleted in new
chr15	78656211	78656690	ENSG00000117971.11|CHRNB4|pc|chr15:78656211:78656690:-	0	-
#Deleted in new
chr15	78657331	78657383	ENSG00000117971.11|CHRNB4|pc|chr15:78657331:78657383:-	0	-
#Deleted in new
chr15	78658279	78658369	ENSG00000117971.11|CHRNB4|pc|chr15:78658279:78658369:-	0	-
#Deleted in new
chr15	78660511	78660532	ENSG00000117971.11|CHRNB4|pc|chr15:78660511:78660532:-	0	-
#Deleted in new
chr15	78686917	78687399	ENSG00000117971.11|CHRNB4|pc|chr15:78686917:78687399:-	0	-
#Deleted in new
chr15	78707987	78708052	ENSG00000117971.11|CHRNB4|pc|chr15:78707987:78708052:-	0	-
#Deleted in new
chr15	78707987	78708105	ENSG00000117971.11|CHRNB4|pc|chr15:78707987:78708105:-	0	-
#Deleted in new
chr15	78720176	78720286	ENSG00000117971.11|CHRNB4|pc|chr15:78720176:78720286:-	0	-
#Deleted in new
chr15	78840551	78840675	ENSG00000185787.14|MORF4L1|pc|chr15:78840551:78840675:+	0	+
#Deleted in new
chr15	78847666	78848081	ENSG00000185787.14|MORF4L1|pc|chr15:78847666:78848081:+	0	+
#Partially deleted in new
chr15	78890641	78891014	ENSG00000185787.14|MORF4L1|pc|chr15:78890641:78891014:+	0	+
#Split in new
chr15	78892211	78893018	ENSG00000185787.14|MORF4L1|pc|chr15:78892211:78893018:+	0	+
#Deleted in new
chr15	78906126	78906809	ENSG00000279235.1|AC011944.2|lncRNA|chr15:78906126:78906809:+	0	+
#Deleted in new
chr15	78937685	78937823	ENSG00000103811.15|CTSH|pc|chr15:78937685:78937823:-	0	-
#Deleted in new
chr15	78949467	78949501	ENSG00000103811.15|CTSH|pc|chr15:78949467:78949501:-	0	-
#Deleted in new
chr15	78949467	78949574	ENSG00000103811.15|CTSH|pc|chr15:78949467:78949574:-	0	-
#Deleted in new
chr15	79004716	79005665	ENSG00000058335.15|RASGRF1|pc|chr15:79004716:79005665:-	0	-
#Deleted in new
chr15	79012488	79012527	ENSG00000058335.15|RASGRF1|pc|chr15:79012488:79012527:-	0	-
#Deleted in new
chr15	79260224	79260306	ENSG00000259234.5|ANKRD34C-AS1|lncRNA|chr15:79260224:79260306:-	0	-
#Deleted in new
chr15	79260228	79260301	ENSG00000259234.5|ANKRD34C-AS1|lncRNA|chr15:79260228:79260301:-	0	-
#Deleted in new
chr15	79260228	79260306	ENSG00000259234.5|ANKRD34C-AS1|lncRNA|chr15:79260228:79260306:-	0	-
#Deleted in new
chr15	79260704	79260846	ENSG00000259234.5|ANKRD34C-AS1|lncRNA|chr15:79260704:79260846:-	0	-
#Partially deleted in new
chr15	79315930	79316023	ENSG00000166557.12|TMED3|pc|chr15:79315930:79316023:+	0	+
#Partially deleted in new
chr15	79382967	79384721	ENSG00000166557.12|TMED3|pc|chr15:79382967:79384721:+	0	+
#Deleted in new
chr15	79832465	79832975	ENSG00000259548.1|AC021483.1|lncRNA|chr15:79832465:79832975:-	0	-
#Deleted in new
chr15	79839480	79839709	ENSG00000136371.10|MTHFS|pc|chr15:79839480:79839709:-	0	-
#Deleted in new
chr15	79841209	79841336	ENSG00000136371.10|MTHFS|pc|chr15:79841209:79841336:-	0	-
#Deleted in new
chr15	79875919	79878179	ENSG00000279394.1|AC015871.4|lncRNA|chr15:79875919:79878179:-	0	-
#Deleted in new
chr15	79897160	79897379	ENSG00000136371.10|MTHFS|pc|chr15:79897160:79897379:-	0	-
#Deleted in new
chr15	79907628	79907684	ENSG00000180953.11|ST20|pc|chr15:79907628:79907684:-	0	-
#Deleted in new
chr15	79907628	79907684	ENSG00000259332.3|ST20-MTHFS|pc|chr15:79907628:79907684:-	0	-
#Deleted in new
chr15	79907628	79908036	ENSG00000180953.11|ST20|pc|chr15:79907628:79908036:-	0	-
#Deleted in new
chr15	80014156	80015707	ENSG00000279705.1|AC092701.1|lncRNA|chr15:80014156:80015707:+	0	+
#Deleted in new
chr15	80060159	80060247	ENSG00000086666.18|ZFAND6|pc|chr15:80060159:80060247:+	0	+
#Deleted in new
chr15	80060423	80060740	ENSG00000086666.18|ZFAND6|pc|chr15:80060423:80060740:+	0	+
#Deleted in new
chr15	80111427	80111559	ENSG00000086666.18|ZFAND6|pc|chr15:80111427:80111559:+	0	+
#Deleted in new
chr15	80115026	80115070	ENSG00000086666.18|ZFAND6|pc|chr15:80115026:80115070:+	0	+
#Partially deleted in new
chr15	80160057	80160299	ENSG00000103876.11|FAH|pc|chr15:80160057:80160299:+	0	+
#Split in new
chr15	80162245	80163707	ENSG00000103876.11|FAH|pc|chr15:80162245:80163707:+	0	+
#Deleted in new
chr15	80165922	80166396	ENSG00000259967.1|AC087761.1|lncRNA|chr15:80165922:80166396:+	0	+
#Deleted in new
chr15	80166898	80166980	ENSG00000259967.1|AC087761.1|lncRNA|chr15:80166898:80166980:+	0	+
#Partially deleted in new
chr15	80263067	80265693	ENSG00000259361.5|LINC00927|lncRNA|chr15:80263067:80265693:-	0	-
#Partially deleted in new
chr15	80280130	80280273	ENSG00000259361.5|LINC00927|lncRNA|chr15:80280130:80280273:-	0	-
#Deleted in new
chr15	80339206	80339347	ENSG00000259361.5|LINC00927|lncRNA|chr15:80339206:80339347:-	0	-
#Deleted in new
chr15	80340305	80340413	ENSG00000259361.5|LINC00927|lncRNA|chr15:80340305:80340413:-	0	-
#Deleted in new
chr15	80341555	80341767	ENSG00000259361.5|LINC00927|lncRNA|chr15:80341555:80341767:-	0	-
#Deleted in new
chr15	80341555	80341768	ENSG00000259361.5|LINC00927|lncRNA|chr15:80341555:80341768:-	0	-
#Deleted in new
chr15	80341555	80341773	ENSG00000259361.5|LINC00927|lncRNA|chr15:80341555:80341773:-	0	-
#Deleted in new
chr15	80341555	80341805	ENSG00000259361.5|LINC00927|lncRNA|chr15:80341555:80341805:-	0	-
#Deleted in new
chr15	80344852	80345127	ENSG00000259495.2|AC016705.2|lncRNA|chr15:80344852:80345127:-	0	-
#Deleted in new
chr15	80347687	80347784	ENSG00000259495.2|AC016705.2|lncRNA|chr15:80347687:80347784:-	0	-
#Partially deleted in new
chr15	80433794	80434518	ENSG00000258010.3|AC016705.1|lncRNA|chr15:80433794:80434518:-	0	-
#Deleted in new
chr15	80436086	80436387	ENSG00000258010.3|AC016705.1|lncRNA|chr15:80436086:80436387:-	0	-
#Partially deleted in new
chr15	80444286	80445152	ENSG00000258010.3|AC016705.1|lncRNA|chr15:80444286:80445152:-	0	-
#Deleted in new
chr15	80487733	80487874	ENSG00000172379.20|ARNT2|pc|chr15:80487733:80487874:+	0	+
#Partially deleted in new
chr15	80704583	80704845	ENSG00000136379.11|ABHD17C|pc|chr15:80704583:80704845:+	0	+
#Partially deleted in new
chr15	80896197	80896361	ENSG00000259649.4|AC027808.2|lncRNA|chr15:80896197:80896361:-	0	-
#Partially deleted in new
chr15	80896206	80896361	ENSG00000259649.4|AC027808.2|lncRNA|chr15:80896206:80896361:-	0	-
#Deleted in new
chr15	80897253	80897339	ENSG00000259546.1|AC027808.1|lncRNA|chr15:80897253:80897339:-	0	-
#Deleted in new
chr15	80897253	80897339	ENSG00000259649.4|AC027808.2|lncRNA|chr15:80897253:80897339:-	0	-
#Deleted in new
chr15	80909499	80909752	ENSG00000259546.1|AC027808.1|lncRNA|chr15:80909499:80909752:-	0	-
#Deleted in new
chr15	80909499	80909760	ENSG00000259649.4|AC027808.2|lncRNA|chr15:80909499:80909760:-	0	-
#Deleted in new
chr15	80909499	80909777	ENSG00000259649.4|AC027808.2|lncRNA|chr15:80909499:80909777:-	0	-
#Deleted in new
chr15	80952936	80953036	ENSG00000117899.10|MESD|pc|chr15:80952936:80953036:-	0	-
#Deleted in new
chr15	80970461	80970659	ENSG00000117899.10|MESD|pc|chr15:80970461:80970659:-	0	-
#Deleted in new
chr15	81127589	81127724	ENSG00000156206.13|CFAP161|pc|chr15:81127589:81127724:+	0	+
#Deleted in new
chr15	81159574	81160000	ENSG00000172349.17|IL16|pc|chr15:81159574:81160000:+	0	+
#Deleted in new
chr15	81331910	81332023	ENSG00000259343.6|TMC3-AS1|lncRNA|chr15:81331910:81332023:+	0	+
#Deleted in new
chr15	81393077	81395536	ENSG00000259343.6|TMC3-AS1|lncRNA|chr15:81393077:81395536:+	0	+
#Deleted in new
chr15	81427447	81427545	ENSG00000259543.1|AC060809.1|lncRNA|chr15:81427447:81427545:+	0	+
#Deleted in new
chr15	81554002	81554030	ENSG00000259594.5|AC023034.1|lncRNA|chr15:81554002:81554030:+	0	+
#Deleted in new
chr15	81652231	81652343	ENSG00000259594.5|AC023034.1|lncRNA|chr15:81652231:81652343:+	0	+
#Deleted in new
chr15	81653092	81653240	ENSG00000259594.5|AC023034.1|lncRNA|chr15:81653092:81653240:+	0	+
#Deleted in new
chr15	81661999	81662138	ENSG00000259692.5|AC104041.1|lncRNA|chr15:81661999:81662138:-	0	-
#Deleted in new
chr15	81668167	81668282	ENSG00000259594.5|AC023034.1|lncRNA|chr15:81668167:81668282:+	0	+
#Deleted in new
chr15	81688409	81688545	ENSG00000259594.5|AC023034.1|lncRNA|chr15:81688409:81688545:+	0	+
#Deleted in new
chr15	81696405	81696780	ENSG00000259594.5|AC023034.1|lncRNA|chr15:81696405:81696780:+	0	+
#Deleted in new
chr15	81797923	81798124	ENSG00000259692.5|AC104041.1|lncRNA|chr15:81797923:81798124:-	0	-
#Deleted in new
chr15	81870927	81871125	ENSG00000259692.5|AC104041.1|lncRNA|chr15:81870927:81871125:-	0	-
#Deleted in new
chr15	81995426	81995666	ENSG00000259445.1|AC025219.1|lncRNA|chr15:81995426:81995666:-	0	-
#Deleted in new
chr15	82088593	82088728	ENSG00000259518.1|LINC01583|lncRNA|chr15:82088593:82088728:+	0	+
#Deleted in new
chr15	82088632	82088728	ENSG00000259518.1|LINC01583|lncRNA|chr15:82088632:82088728:+	0	+
#Deleted in new
chr15	82088690	82088728	ENSG00000259518.1|LINC01583|lncRNA|chr15:82088690:82088728:+	0	+
#Deleted in new
chr15	82093393	82093494	ENSG00000259518.1|LINC01583|lncRNA|chr15:82093393:82093494:+	0	+
#Deleted in new
chr15	82093982	82094234	ENSG00000259518.1|LINC01583|lncRNA|chr15:82093982:82094234:+	0	+
#Deleted in new
chr15	82095481	82095707	ENSG00000259518.1|LINC01583|lncRNA|chr15:82095481:82095707:+	0	+
#Deleted in new
chr15	82095481	82096436	ENSG00000259518.1|LINC01583|lncRNA|chr15:82095481:82096436:+	0	+
#Deleted in new
chr15	82097447	82097694	ENSG00000259518.1|LINC01583|lncRNA|chr15:82097447:82097694:+	0	+
#Deleted in new
chr15	82159931	82160070	ENSG00000140598.13|EFL1|pc|chr15:82159931:82160070:-	0	-
#Deleted in new
chr15	82233662	82233774	ENSG00000140598.13|EFL1|pc|chr15:82233662:82233774:-	0	-
#Duplicated in new
chr15	82344587	82345426	ENSG00000278662.4|GOLGA6L10|pc|chr15:82344587:82345426:-	0	-
#Deleted in new
chr15	82418650	82418792	ENSG00000278202.1|AC243919.1|lncRNA|chr15:82418650:82418792:+	0	+
#Partially deleted in new
chr15	82536754	82538371	ENSG00000182774.10|RPS17|pc|chr15:82536754:82538371:-	0	-
#Partially deleted in new
chr15	82536762	82538371	ENSG00000182774.10|RPS17|pc|chr15:82536762:82538371:-	0	-
#Deleted in new
chr15	82537921	82538042	ENSG00000182774.10|RPS17|pc|chr15:82537921:82538042:-	0	-
#Deleted in new
chr15	82539299	82539375	ENSG00000182774.10|RPS17|pc|chr15:82539299:82539375:-	0	-
#Deleted in new
chr15	82583370	82583462	ENSG00000214575.9|CPEB1|pc|chr15:82583370:82583462:-	0	-
#Deleted in new
chr15	82628137	82628152	ENSG00000214575.9|CPEB1|pc|chr15:82628137:82628152:-	0	-
#Deleted in new
chr15	82628137	82628469	ENSG00000214575.9|CPEB1|pc|chr15:82628137:82628469:-	0	-
#Partially deleted in new
chr15	82628363	82630185	ENSG00000214575.9|CPEB1|pc|chr15:82628363:82630185:-	0	-
#Deleted in new
chr15	82633171	82633221	ENSG00000214575.9|CPEB1|pc|chr15:82633171:82633221:-	0	-
#Deleted in new
chr15	82633181	82633221	ENSG00000214575.9|CPEB1|pc|chr15:82633181:82633221:-	0	-
#Deleted in new
chr15	82638564	82638634	ENSG00000214575.9|CPEB1|pc|chr15:82638564:82638634:-	0	-
#Partially deleted in new
chr15	82650028	82650146	ENSG00000259462.2|CPEB1-AS1|lncRNA|chr15:82650028:82650146:+	0	+
#Partially deleted in new
chr15	82650028	82653022	ENSG00000259462.2|CPEB1-AS1|lncRNA|chr15:82650028:82653022:+	0	+
#Partially deleted in new
chr15	82685090	82688498	ENSG00000103723.12|AP3B2|pc|chr15:82685090:82688498:-	0	-
#Deleted in new
chr15	82686814	82687019	ENSG00000103723.12|AP3B2|pc|chr15:82686814:82687019:-	0	-
#Deleted in new
chr15	82708771	82708851	ENSG00000103723.12|AP3B2|pc|chr15:82708771:82708851:-	0	-
#Deleted in new
chr15	82738385	82739122	ENSG00000279758.1|AC105339.4|lncRNA|chr15:82738385:82739122:+	0	+
#Deleted in new
chr15	82744222	82744319	ENSG00000259442.1|AC105339.2|lncRNA|chr15:82744222:82744319:+	0	+
#Deleted in new
chr15	82925883	82926617	ENSG00000259805.1|AC022558.2|lncRNA|chr15:82925883:82926617:+	0	+
#Partially deleted in new
chr15	82988440	82988828	ENSG00000169609.13|C15orf40|pc|chr15:82988440:82988828:-	0	-
#Deleted in new
chr15	82991931	82992046	ENSG00000169609.13|C15orf40|pc|chr15:82991931:82992046:-	0	-
#Deleted in new
chr15	82991955	82992046	ENSG00000169609.13|C15orf40|pc|chr15:82991955:82992046:-	0	-
#Partially deleted in new
chr15	83005278	83005692	ENSG00000169609.13|C15orf40|pc|chr15:83005278:83005692:-	0	-
#Partially deleted in new
chr15	83005297	83005692	ENSG00000169609.13|C15orf40|pc|chr15:83005297:83005692:-	0	-
#Partially deleted in new
chr15	83007850	83008675	ENSG00000169609.13|C15orf40|pc|chr15:83007850:83008675:-	0	-
#Deleted in new
chr15	83012660	83012722	ENSG00000260608.1|AC024270.4|lncRNA|chr15:83012660:83012722:+	0	+
#Deleted in new
chr15	83022235	83022478	ENSG00000259767.1|AC022558.1|lncRNA|chr15:83022235:83022478:-	0	-
#Deleted in new
chr15	83022570	83022607	ENSG00000260351.1|AC024270.2|lncRNA|chr15:83022570:83022607:+	0	+
#Deleted in new
chr15	83024125	83024336	ENSG00000259767.1|AC022558.1|lncRNA|chr15:83024125:83024336:-	0	-
#Deleted in new
chr15	83029542	83029863	ENSG00000064726.9|BTBD1|pc|chr15:83029542:83029863:-	0	-
#Deleted in new
chr15	83103423	83103443	ENSG00000259805.1|AC022558.2|lncRNA|chr15:83103423:83103443:+	0	+
#Deleted in new
chr15	83113616	83113778	ENSG00000260579.1|AC024270.3|lncRNA|chr15:83113616:83113778:-	0	-
#Deleted in new
chr15	83120048	83120086	ENSG00000136404.15|TM6SF1|pc|chr15:83120048:83120086:+	0	+
#Deleted in new
chr15	83144521	83144854	ENSG00000136404.15|TM6SF1|pc|chr15:83144521:83144854:+	0	+
#Deleted in new
chr15	83169221	83169231	ENSG00000166503.8|HDGFL3|pc|chr15:83169221:83169231:-	0	-
#Deleted in new
chr15	83179181	83179251	ENSG00000259986.1|AC103876.1|lncRNA|chr15:83179181:83179251:+	0	+
#Deleted in new
chr15	83179777	83179848	ENSG00000259986.1|AC103876.1|lncRNA|chr15:83179777:83179848:+	0	+
#Deleted in new
chr15	83180801	83181021	ENSG00000259986.1|AC103876.1|lncRNA|chr15:83180801:83181021:+	0	+
#Deleted in new
chr15	83185933	83186068	ENSG00000259986.1|AC103876.1|lncRNA|chr15:83185933:83186068:+	0	+
#Deleted in new
chr15	83189360	83189516	ENSG00000166503.8|HDGFL3|pc|chr15:83189360:83189516:-	0	-
#Deleted in new
chr15	83439419	83439445	ENSG00000259986.1|AC103876.1|lncRNA|chr15:83439419:83439445:+	0	+
#Deleted in new
chr15	83488060	83488296	ENSG00000140600.16|SH3GL3|pc|chr15:83488060:83488296:+	0	+
#Deleted in new
chr15	83861484	83862935	ENSG00000156218.12|ADAMTSL3|pc|chr15:83861484:83862935:+	0	+
#Deleted in new
chr15	83945734	83945914	ENSG00000156218.12|ADAMTSL3|pc|chr15:83945734:83945914:+	0	+
#Deleted in new
chr15	83945755	83945914	ENSG00000156218.12|ADAMTSL3|pc|chr15:83945755:83945914:+	0	+
#Deleted in new
chr15	83961572	83961801	ENSG00000156218.12|ADAMTSL3|pc|chr15:83961572:83961801:+	0	+
#Deleted in new
chr15	83962175	83962583	ENSG00000274128.1|AC027807.2|lncRNA|chr15:83962175:83962583:+	0	+
#Partially deleted in new
chr15	84171177	84171467	ENSG00000259694.1|AC136698.1|lncRNA|chr15:84171177:84171467:-	0	-
#Partially deleted in new
chr15	84172489	84172585	ENSG00000259511.2|UBE2Q2L|pc|chr15:84172489:84172585:+	0	+
#Partially deleted in new
chr15	84172492	84172585	ENSG00000259511.2|UBE2Q2L|pc|chr15:84172492:84172585:+	0	+
#Deleted in new
chr15	84173982	84174157	ENSG00000259511.2|UBE2Q2L|pc|chr15:84173982:84174157:+	0	+
#Deleted in new
chr15	84174007	84174157	ENSG00000259511.2|UBE2Q2L|pc|chr15:84174007:84174157:+	0	+
#Partially deleted in new
chr15	84502091	84502381	ENSG00000259551.1|AC048382.4|lncRNA|chr15:84502091:84502381:+	0	+
#Deleted in new
chr15	84601973	84602250	ENSG00000176371.13|ZSCAN2|pc|chr15:84601973:84602250:+	0	+
#Deleted in new
chr15	84601998	84602250	ENSG00000176371.13|ZSCAN2|pc|chr15:84601998:84602250:+	0	+
#Deleted in new
chr15	84602186	84602250	ENSG00000176371.13|ZSCAN2|pc|chr15:84602186:84602250:+	0	+
#Deleted in new
chr15	84611688	84612159	ENSG00000256278.1|AC048382.1|lncRNA|chr15:84611688:84612159:-	0	-
#Deleted in new
chr15	84614422	84614969	ENSG00000256278.1|AC048382.1|lncRNA|chr15:84614422:84614969:-	0	-
#Deleted in new
chr15	84616308	84616614	ENSG00000176371.13|ZSCAN2|pc|chr15:84616308:84616614:+	0	+
#Deleted in new
chr15	84622927	84623132	ENSG00000176371.13|ZSCAN2|pc|chr15:84622927:84623132:+	0	+
#Deleted in new
chr15	84627695	84627796	ENSG00000176371.13|ZSCAN2|pc|chr15:84627695:84627796:+	0	+
#Split in new
chr15	84639280	84643723	ENSG00000177082.12|WDR73|pc|chr15:84639280:84643723:-	0	-
#Partially deleted in new
chr15	84653181	84653699	ENSG00000177082.12|WDR73|pc|chr15:84653181:84653699:-	0	-
#Partially deleted in new
chr15	84670724	84673826	ENSG00000140612.13|SEC11A|pc|chr15:84670724:84673826:-	0	-
#Deleted in new
chr15	84685883	84685938	ENSG00000259654.1|AC115102.1|lncRNA|chr15:84685883:84685938:+	0	+
#Deleted in new
chr15	84686514	84686946	ENSG00000259654.1|AC115102.1|lncRNA|chr15:84686514:84686946:+	0	+
#Deleted in new
chr15	84691969	84692120	ENSG00000140612.13|SEC11A|pc|chr15:84691969:84692120:-	0	-
#Deleted in new
chr15	84714730	84714866	ENSG00000140612.13|SEC11A|pc|chr15:84714730:84714866:-	0	-
#Deleted in new
chr1	58473825	58473968	ENSG00000162600.11|OMA1|pc|chr1:58473825:58473968:-	0	-
#Partially deleted in new
chr15	84753121	84753517	ENSG00000259415.1|AC012291.1|lncRNA|chr15:84753121:84753517:+	0	+
#Deleted in new
chr15	84754469	84754502	ENSG00000259415.1|AC012291.1|lncRNA|chr15:84754469:84754502:+	0	+
#Deleted in new
chr15	84778182	84778312	ENSG00000166716.9|ZNF592|pc|chr15:84778182:84778312:+	0	+
#Deleted in new
chr15	84778259	84778312	ENSG00000166716.9|ZNF592|pc|chr15:84778259:84778312:+	0	+
#Partially deleted in new
chr15	84895377	84896046	ENSG00000156222.11|SLC28A1|pc|chr15:84895377:84896046:+	0	+
#Deleted in new
chr1	58541490	58541609	ENSG00000162600.11|OMA1|pc|chr1:58541490:58541609:-	0	-
#Partially deleted in new
chr15	85533583	85536997	ENSG00000170776.21|AKAP13|pc|chr15:85533583:85536997:+	0	+
#Deleted in new
chr15	85627563	85627689	ENSG00000259276.1|AC087286.1|lncRNA|chr15:85627563:85627689:-	0	-
#Deleted in new
chr15	85635096	85635105	ENSG00000170776.21|AKAP13|pc|chr15:85635096:85635105:+	0	+
#Deleted in new
chr15	85683526	85683612	ENSG00000170776.21|AKAP13|pc|chr15:85683526:85683612:+	0	+
#Deleted in new
chr15	85701108	85701226	ENSG00000259453.1|AC087286.4|lncRNA|chr15:85701108:85701226:+	0	+
#Partially deleted in new
chr15	85718800	85718875	ENSG00000170776.21|AKAP13|pc|chr15:85718800:85718875:+	0	+
#Partially deleted in new
chr15	85726114	85726447	ENSG00000259544.1|AC021739.4|lncRNA|chr15:85726114:85726447:-	0	-
#Deleted in new
chr15	85750241	85750281	ENSG00000259407.1|AC021739.2|lncRNA|chr15:85750241:85750281:-	0	-
#Deleted in new
chr15	85752763	85752901	ENSG00000259762.1|AC021739.5|lncRNA|chr15:85752763:85752901:-	0	-
#Deleted in new
chr15	85754940	85755241	ENSG00000259416.2|AC021739.3|lncRNA|chr15:85754940:85755241:-	0	-
#Deleted in new
chr15	85755517	85755655	ENSG00000259416.2|AC021739.3|lncRNA|chr15:85755517:85755655:-	0	-
#Deleted in new
chr15	85755821	85756237	ENSG00000259416.2|AC021739.3|lncRNA|chr15:85755821:85756237:-	0	-
#Partially deleted in new
chr15	85759329	85764472	ENSG00000183655.12|KLHL25|pc|chr15:85759329:85764472:-	0	-
#Deleted in new
chr15	86078808	86079052	ENSG00000260477.7|LINC01584|lncRNA|chr15:86078808:86079052:-	0	-
#Partially deleted in new
chr15	86296867	86297074	ENSG00000260125.1|AGBL1-AS1|lncRNA|chr15:86296867:86297074:-	0	-
#Deleted in new
chr15	86304911	86304981	ENSG00000260125.1|AGBL1-AS1|lncRNA|chr15:86304911:86304981:-	0	-
#Deleted in new
chr15	86304911	86305084	ENSG00000260125.1|AGBL1-AS1|lncRNA|chr15:86304911:86305084:-	0	-
#Deleted in new
chr15	86305050	86305084	ENSG00000260125.1|AGBL1-AS1|lncRNA|chr15:86305050:86305084:-	0	-
#Deleted in new
chr15	86316729	86316963	ENSG00000260125.1|AGBL1-AS1|lncRNA|chr15:86316729:86316963:-	0	-
#Deleted in new
chr15	86316729	86317173	ENSG00000260125.1|AGBL1-AS1|lncRNA|chr15:86316729:86317173:-	0	-
#Deleted in new
chr15	86631056	86631136	ENSG00000259734.1|AC012229.1|lncRNA|chr15:86631056:86631136:-	0	-
#Partially deleted in new
chr1	5867029	5867652	ENSG00000131697.17|NPHP4|pc|chr1:5867029:5867652:-	0	-
#Deleted in new
chr15	86938796	86939090	ENSG00000259620.1|AC016987.1|lncRNA|chr15:86938796:86939090:-	0	-
#Deleted in new
chr15	86939651	86939766	ENSG00000259620.1|AC016987.1|lncRNA|chr15:86939651:86939766:-	0	-
#Deleted in new
chr15	87042053	87042197	ENSG00000259761.1|AC078905.1|lncRNA|chr15:87042053:87042197:+	0	+
#Deleted in new
chr1	58717756	58717920	ENSG00000283445.1|AL136985.3|lncRNA|chr1:58717756:58717920:+	0	+
#Deleted in new
chr1	58718419	58718748	ENSG00000283445.1|AL136985.3|lncRNA|chr1:58718419:58718748:+	0	+
#Deleted in new
chr1	58718560	58718748	ENSG00000283445.1|AL136985.3|lncRNA|chr1:58718560:58718748:+	0	+
#Split in new
chr1	5873251	5873841	ENSG00000131697.17|NPHP4|pc|chr1:5873251:5873841:-	0	-
#Deleted in new
chr15	87576928	87577047	ENSG00000259527.2|LINC00052|lncRNA|chr15:87576928:87577047:+	0	+
#Deleted in new
chr1	58758278	58758305	ENSG00000283445.1|AL136985.3|lncRNA|chr1:58758278:58758305:+	0	+
#Deleted in new
chr1	58758486	58759623	ENSG00000283445.1|AL136985.3|lncRNA|chr1:58758486:58759623:+	0	+
#Deleted in new
chr1	5875953	5876078	ENSG00000131697.17|NPHP4|pc|chr1:5875953:5876078:-	0	-
#Deleted in new
chr1	587628	587701	ENSG00000235146.2|AC114498.1|lncRNA|chr1:587628:587701:+	0	+
#Deleted in new
chr1	5876385	5876523	ENSG00000131697.17|NPHP4|pc|chr1:5876385:5876523:-	0	-
#Deleted in new
chr1	58766109	58766187	ENSG00000283445.1|AL136985.3|lncRNA|chr1:58766109:58766187:+	0	+
#Deleted in new
chr1	587667	587729	ENSG00000235146.2|AC114498.1|lncRNA|chr1:587667:587729:+	0	+
#Deleted in new
chr1	58767832	58767935	ENSG00000283445.1|AL136985.3|lncRNA|chr1:58767832:58767935:+	0	+
#Deleted in new
chr15	87703772	87703852	ENSG00000259560.1|AC020687.1|lncRNA|chr15:87703772:87703852:-	0	-
#Partially deleted in new
chr1	5879345	5879632	ENSG00000131697.17|NPHP4|pc|chr1:5879345:5879632:-	0	-
#Deleted in new
chr1	5879504	5879632	ENSG00000131697.17|NPHP4|pc|chr1:5879504:5879632:-	0	-
#Deleted in new
chr15	88099002	88099265	ENSG00000140538.16|NTRK3|pc|chr15:88099002:88099265:-	0	-
#Deleted in new
chr1	58812807	58813342	ENSG00000272226.1|AL136985.2|lncRNA|chr1:58812807:58813342:-	0	-
#Deleted in new
chr15	88205819	88205933	ENSG00000140538.16|NTRK3|pc|chr15:88205819:88205933:-	0	-
#Partially deleted in new
chr15	88460152	88460382	ENSG00000259494.1|MRPL46|pc|chr15:88460152:88460382:-	0	-
#Partially deleted in new
chr15	88472235	88472620	ENSG00000181991.15|MRPS11|pc|chr15:88472235:88472620:+	0	+
#Partially deleted in new
chr15	88472354	88472620	ENSG00000181991.15|MRPS11|pc|chr15:88472354:88472620:+	0	+
#Partially deleted in new
chr15	88494439	88494663	ENSG00000140543.14|DET1|pc|chr15:88494439:88494663:-	0	-
#Partially deleted in new
chr15	88501943	88505787	ENSG00000140543.14|DET1|pc|chr15:88501943:88505787:-	0	-
#Deleted in new
chr15	88503874	88503987	ENSG00000140543.14|DET1|pc|chr15:88503874:88503987:-	0	-
#Partially deleted in new
chr15	88511431	88511521	ENSG00000173867.9|AC013489.1|lncRNA|chr15:88511431:88511521:-	0	-
#Partially deleted in new
chr1	58851223	58851254	ENSG00000231740.1|AL136985.1|lncRNA|chr1:58851223:58851254:-	0	-
#Deleted in new
chr15	88536311	88536334	ENSG00000140543.14|DET1|pc|chr15:88536311:88536334:-	0	-
#Deleted in new
chr15	88536311	88536381	ENSG00000140543.14|DET1|pc|chr15:88536311:88536381:-	0	-
#Deleted in new
chr15	88603970	88604059	ENSG00000249487.6|LINC01586|lncRNA|chr15:88603970:88604059:-	0	-
#Deleted in new
chr15	88637361	88637428	ENSG00000172183.14|ISG20|pc|chr15:88637361:88637428:+	0	+
#Partially deleted in new
chr15	88646911	88652310	ENSG00000172183.14|ISG20|pc|chr15:88646911:88652310:+	0	+
#Deleted in new
chr15	88647819	88648002	ENSG00000172183.14|ISG20|pc|chr15:88647819:88648002:+	0	+
#Deleted in new
chr15	88650234	88650386	ENSG00000172183.14|ISG20|pc|chr15:88650234:88650386:+	0	+
#Deleted in new
chr15	88650252	88650329	ENSG00000172183.14|ISG20|pc|chr15:88650252:88650329:+	0	+
#Partially deleted in new
chr15	88655414	88656483	ENSG00000172183.14|ISG20|pc|chr15:88655414:88656483:+	0	+
#Partially deleted in new
chr1	58882867	58883734	ENSG00000232453.6|AC105277.1|lncRNA|chr1:58882867:58883734:-	0	-
#Partially deleted in new
chr1	58882871	58883734	ENSG00000232453.6|AC105277.1|lncRNA|chr1:58882871:58883734:-	0	-
#Partially deleted in new
chr1	58882873	58883734	ENSG00000232453.6|AC105277.1|lncRNA|chr1:58882873:58883734:-	0	-
#Deleted in new
chr1	5888459	5888610	ENSG00000131697.17|NPHP4|pc|chr1:5888459:5888610:-	0	-
#Deleted in new
chr15	88892973	88893112	ENSG00000140511.11|HAPLN3|pc|chr15:88892973:88893112:-	0	-
#Partially deleted in new
chr15	88903789	88904162	ENSG00000140545.14|MFGE8|pc|chr15:88903789:88904162:-	0	-
#Partially deleted in new
chr15	88903936	88904162	ENSG00000140545.14|MFGE8|pc|chr15:88903936:88904162:-	0	-
#Partially deleted in new
chr15	88910779	88911098	ENSG00000140545.14|MFGE8|pc|chr15:88910779:88911098:-	0	-
#Deleted in new
chr1	58896256	58896385	ENSG00000234807.5|LINC01135|lncRNA|chr1:58896256:58896385:+	0	+
#Deleted in new
chr1	58903567	58903679	ENSG00000232453.6|AC105277.1|lncRNA|chr1:58903567:58903679:-	0	-
#Partially deleted in new
chr1	58903567	58903747	ENSG00000232453.6|AC105277.1|lncRNA|chr1:58903567:58903747:-	0	-
#Deleted in new
chr15	89041222	89041300	ENSG00000260123.1|AC013565.1|lncRNA|chr15:89041222:89041300:+	0	+
#Deleted in new
chr15	89070090	89070191	ENSG00000260123.1|AC013565.1|lncRNA|chr15:89070090:89070191:+	0	+
#Deleted in new
chr15	89106269	89106402	ENSG00000140526.17|ABHD2|pc|chr15:89106269:89106402:+	0	+
#Deleted in new
chr15	89183331	89183373	ENSG00000140526.17|ABHD2|pc|chr15:89183331:89183373:+	0	+
#Deleted in new
chr15	89244249	89244280	ENSG00000140525.17|FANCI|pc|chr15:89244249:89244280:+	0	+
#Deleted in new
chr15	89245194	89245311	ENSG00000140525.17|FANCI|pc|chr15:89245194:89245311:+	0	+
#Deleted in new
chr1	58939613	58939795	ENSG00000237352.3|LINC01358|lncRNA|chr1:58939613:58939795:+	0	+
#Deleted in new
chr15	89505276	89505858	ENSG00000259218.5|LINC00928|lncRNA|chr15:89505276:89505858:-	0	-
#Deleted in new
chr15	89505277	89505778	ENSG00000259218.5|LINC00928|lncRNA|chr15:89505277:89505778:-	0	-
#Deleted in new
chr15	89508960	89510416	ENSG00000261478.1|AC013391.3|lncRNA|chr15:89508960:89510416:+	0	+
#Deleted in new
chr15	89510072	89510123	ENSG00000259218.5|LINC00928|lncRNA|chr15:89510072:89510123:-	0	-
#Deleted in new
chr15	89514587	89514833	ENSG00000259218.5|LINC00928|lncRNA|chr15:89514587:89514833:-	0	-
#Deleted in new
chr15	89517283	89517437	ENSG00000259218.5|LINC00928|lncRNA|chr15:89517283:89517437:-	0	-
#Deleted in new
chr15	89517401	89517437	ENSG00000259218.5|LINC00928|lncRNA|chr15:89517401:89517437:-	0	-
#Deleted in new
chr15	89518522	89518569	ENSG00000259713.1|AC013391.2|lncRNA|chr15:89518522:89518569:+	0	+
#Deleted in new
chr1	58953858	58953919	ENSG00000237352.3|LINC01358|lncRNA|chr1:58953858:58953919:+	0	+
#Deleted in new
chr15	89579764	89580137	ENSG00000259615.1|AC013391.1|lncRNA|chr15:89579764:89580137:-	0	-
#Deleted in new
chr15	89582211	89582297	ENSG00000259615.1|AC013391.1|lncRNA|chr15:89582211:89582297:-	0	-
#Deleted in new
chr15	89677763	89677932	ENSG00000166821.8|PEX11A|pc|chr15:89677763:89677932:-	0	-
#Deleted in new
chr15	89719605	89719627	ENSG00000140527.14|WDR93|pc|chr15:89719605:89719627:+	0	+
#Deleted in new
chr15	89721248	89721410	ENSG00000140527.14|WDR93|pc|chr15:89721248:89721410:+	0	+
#Deleted in new
chr15	89764799	89764920	ENSG00000188095.4|MESP2|pc|chr15:89764799:89764920:+	0	+
#Deleted in new
chr15	89865458	89865693	ENSG00000157823.16|AP3S2|pc|chr15:89865458:89865693:-	0	-
#Deleted in new
chr15	89865460	89865693	ENSG00000250021.7|C15orf38-AP3S2|pc|chr15:89865460:89865693:-	0	-
#Deleted in new
chr15	89865612	89865693	ENSG00000157823.16|AP3S2|pc|chr15:89865612:89865693:-	0	-
#Deleted in new
chr15	89878264	89878300	ENSG00000157823.16|AP3S2|pc|chr15:89878264:89878300:-	0	-
#Partially deleted in new
chr15	89895005	89901803	ENSG00000242498.7|ARPIN|pc|chr15:89895005:89901803:-	0	-
#Deleted in new
chr15	89950759	89951345	ENSG00000280377.1|AC027176.3|lncRNA|chr15:89950759:89951345:+	0	+
#Deleted in new
chr15	90100575	90100695	ENSG00000182054.9|IDH2|pc|chr15:90100575:90100695:-	0	-
#Deleted in new
chr15	90103379	90103452	ENSG00000259685.2|AC092769.1|lncRNA|chr15:90103379:90103452:+	0	+
#Deleted in new
chr15	90117979	90118097	ENSG00000259685.2|AC092769.1|lncRNA|chr15:90117979:90118097:+	0	+
#Deleted in new
chr15	90133396	90133445	ENSG00000259685.2|AC092769.1|lncRNA|chr15:90133396:90133445:+	0	+
#Deleted in new
chr1	59020365	59020623	ENSG00000237352.3|LINC01358|lncRNA|chr1:59020365:59020623:+	0	+
#Deleted in new
chr1	59020386	59020623	ENSG00000237352.3|LINC01358|lncRNA|chr1:59020386:59020623:+	0	+
#Deleted in new
chr1	59020494	59020623	ENSG00000237352.3|LINC01358|lncRNA|chr1:59020494:59020623:+	0	+
#Deleted in new
chr1	59020587	59020623	ENSG00000237352.3|LINC01358|lncRNA|chr1:59020587:59020623:+	0	+
#Deleted in new
chr1	59020598	59020623	ENSG00000237352.3|LINC01358|lncRNA|chr1:59020598:59020623:+	0	+
#Deleted in new
chr1	59021126	59021286	ENSG00000237352.3|LINC01358|lncRNA|chr1:59021126:59021286:+	0	+
#Deleted in new
chr1	59021487	59021577	ENSG00000237352.3|LINC01358|lncRNA|chr1:59021487:59021577:+	0	+
#Deleted in new
chr15	90236062	90236181	ENSG00000183208.12|GDPGP1|pc|chr15:90236062:90236181:+	0	+
#Deleted in new
chr15	90236062	90236181	ENSG00000284626.1|AC091167.8|pc|chr15:90236062:90236181:+	0	+
#Deleted in new
chr15	90238491	90238548	ENSG00000183208.12|GDPGP1|pc|chr15:90238491:90238548:+	0	+
#Deleted in new
chr15	90238491	90238548	ENSG00000284626.1|AC091167.8|pc|chr15:90238491:90238548:+	0	+
#Deleted in new
chr15	90244117	90244217	ENSG00000284626.1|AC091167.8|pc|chr15:90244117:90244217:+	0	+
#Split in new
chr15	90271187	90278141	ENSG00000182768.8|NGRN|pc|chr15:90271187:90278141:+	0	+
#Deleted in new
chr15	90314297	90314499	ENSG00000275674.1|AC091167.7|pc|chr15:90314297:90314499:+	0	+
#Deleted in new
chr15	90352244	90352411	ENSG00000196391.10|ZNF774|pc|chr15:90352244:90352411:+	0	+
#Deleted in new
chr15	90352302	90352411	ENSG00000196391.10|ZNF774|pc|chr15:90352302:90352411:+	0	+
#Deleted in new
chr15	90352315	90352411	ENSG00000196391.10|ZNF774|pc|chr15:90352315:90352411:+	0	+
#Deleted in new
chr15	90352339	90352411	ENSG00000196391.10|ZNF774|pc|chr15:90352339:90352411:+	0	+
#Deleted in new
chr15	90355350	90355416	ENSG00000196391.10|ZNF774|pc|chr15:90355350:90355416:+	0	+
#Deleted in new
chr15	90362544	90362641	ENSG00000196391.10|ZNF774|pc|chr15:90362544:90362641:+	0	+
#Partially deleted in new
chr15	90363932	90369146	ENSG00000196391.10|ZNF774|pc|chr15:90363932:90369146:+	0	+
#Deleted in new
chr15	90393489	90393873	ENSG00000259177.1|AC018946.1|lncRNA|chr15:90393489:90393873:-	0	-
#Deleted in new
chr15	90397807	90397881	ENSG00000259177.1|AC018946.1|lncRNA|chr15:90397807:90397881:-	0	-
#Deleted in new
chr1	59044493	59044614	ENSG00000237352.3|LINC01358|lncRNA|chr1:59044493:59044614:+	0	+
#Deleted in new
chr15	90475688	90475754	ENSG00000140575.12|IQGAP1|pc|chr15:90475688:90475754:+	0	+
#Partially deleted in new
chr15	90494026	90494835	ENSG00000140575.12|IQGAP1|pc|chr15:90494026:90494835:+	0	+
#Deleted in new
chr1	59059637	59059682	ENSG00000235215.2|AL592431.1|lncRNA|chr1:59059637:59059682:-	0	-
#Partially deleted in new
chr15	90597873	90598211	ENSG00000140577.15|CRTC3|pc|chr15:90597873:90598211:+	0	+
#Deleted in new
chr15	90598345	90598419	ENSG00000140577.15|CRTC3|pc|chr15:90598345:90598419:+	0	+
#Deleted in new
chr15	90598449	90598911	ENSG00000140577.15|CRTC3|pc|chr15:90598449:90598911:+	0	+
#Deleted in new
chr15	90598449	90599535	ENSG00000140577.15|CRTC3|pc|chr15:90598449:90599535:+	0	+
#Deleted in new
chr15	90620006	90620153	ENSG00000259736.1|CRTC3-AS1|lncRNA|chr15:90620006:90620153:-	0	-
#Deleted in new
chr1	59062114	59062184	ENSG00000237352.3|LINC01358|lncRNA|chr1:59062114:59062184:+	0	+
#Partially deleted in new
chr15	90650630	90651103	ENSG00000278370.1|AC021422.1|lncRNA|chr15:90650630:90651103:+	0	+
#Deleted in new
chr15	90661392	90661483	ENSG00000245479.2|LINC01585|lncRNA|chr15:90661392:90661483:+	0	+
#Deleted in new
chr15	90664354	90664686	ENSG00000245479.2|LINC01585|lncRNA|chr15:90664354:90664686:+	0	+
#Deleted in new
chr15	90664354	90664967	ENSG00000245479.2|LINC01585|lncRNA|chr15:90664354:90664967:+	0	+
#Deleted in new
chr15	90712992	90713299	ENSG00000259736.1|CRTC3-AS1|lncRNA|chr15:90712992:90713299:-	0	-
#Deleted in new
chr15	90713166	90713299	ENSG00000259736.1|CRTC3-AS1|lncRNA|chr15:90713166:90713299:-	0	-
#Deleted in new
chr15	90714920	90715042	ENSG00000259736.1|CRTC3-AS1|lncRNA|chr15:90714920:90715042:-	0	-
#Deleted in new
chr15	90716976	90717049	ENSG00000259736.1|CRTC3-AS1|lncRNA|chr15:90716976:90717049:-	0	-
#Deleted in new
chr15	90716980	90717141	ENSG00000259736.1|CRTC3-AS1|lncRNA|chr15:90716980:90717141:-	0	-
#Deleted in new
chr15	90717326	90717440	ENSG00000197299.10|BLM|pc|chr15:90717326:90717440:+	0	+
#Deleted in new
chr15	90717393	90717440	ENSG00000197299.10|BLM|pc|chr15:90717393:90717440:+	0	+
#Deleted in new
chr15	90717403	90717440	ENSG00000197299.10|BLM|pc|chr15:90717403:90717440:+	0	+
#Deleted in new
chr1	59082567	59082708	ENSG00000237352.3|LINC01358|lncRNA|chr1:59082567:59082708:+	0	+
#Deleted in new
chr1	59082636	59082708	ENSG00000237352.3|LINC01358|lncRNA|chr1:59082636:59082708:+	0	+
#Deleted in new
chr15	90841153	90841378	ENSG00000259704.1|AC124248.1|lncRNA|chr15:90841153:90841378:+	0	+
#Deleted in new
chr1	59086402	59086596	ENSG00000237352.3|LINC01358|lncRNA|chr1:59086402:59086596:+	0	+
#Deleted in new
chr15	90930179	90930255	ENSG00000140553.17|UNC45A|pc|chr15:90930179:90930255:+	0	+
#Deleted in new
chr15	90930217	90930255	ENSG00000140553.17|UNC45A|pc|chr15:90930217:90930255:+	0	+
#Partially deleted in new
chr15	90932585	90932806	ENSG00000224441.1|AC068831.2|lncRNA|chr15:90932585:90932806:-	0	-
#Partially deleted in new
chr15	90932601	90932755	ENSG00000224441.1|AC068831.2|lncRNA|chr15:90932601:90932755:-	0	-
#Partially deleted in new
chr15	90961617	90962324	ENSG00000166965.12|RCCD1|pc|chr15:90961617:90962324:+	0	+
#Partially deleted in new
chr15	90961617	90962342	ENSG00000166965.12|RCCD1|pc|chr15:90961617:90962342:+	0	+
#Partially deleted in new
chr15	90961617	90963125	ENSG00000166965.12|RCCD1|pc|chr15:90961617:90963125:+	0	+
#Deleted in new
chr15	90961923	90962221	ENSG00000166965.12|RCCD1|pc|chr15:90961923:90962221:+	0	+
#Deleted in new
chr15	90972859	90973106	ENSG00000258725.1|PRC1-AS1|lncRNA|chr15:90972859:90973106:+	0	+
#Deleted in new
chr15	90982621	90982745	ENSG00000198901.13|PRC1|pc|chr15:90982621:90982745:-	0	-
#Deleted in new
chr15	90985762	90986025	ENSG00000198901.13|PRC1|pc|chr15:90985762:90986025:-	0	-
#Partially deleted in new
chr15	90987629	90988624	ENSG00000258725.1|PRC1-AS1|lncRNA|chr15:90987629:90988624:+	0	+
#Split in new
chr15	90994406	90995629	ENSG00000198901.13|PRC1|pc|chr15:90994406:90995629:-	0	-
#Deleted in new
chr15	91022765	91023200	ENSG00000278514.1|AC068831.8|lncRNA|chr15:91022765:91023200:+	0	+
#Deleted in new
chr15	91023312	91023435	ENSG00000214432.9|AC068831.1|lncRNA|chr15:91023312:91023435:+	0	+
#Deleted in new
chr15	91023312	91023594	ENSG00000214432.9|AC068831.1|lncRNA|chr15:91023312:91023594:+	0	+
#Deleted in new
chr15	91023312	91023701	ENSG00000214432.9|AC068831.1|lncRNA|chr15:91023312:91023701:+	0	+
#Deleted in new
chr15	91023312	91023971	ENSG00000214432.9|AC068831.1|lncRNA|chr15:91023312:91023971:+	0	+
#Split in new
chr15	91034917	91036611	ENSG00000214432.9|AC068831.1|lncRNA|chr15:91034917:91036611:+	0	+
#Deleted in new
chr1	59103511	59103820	ENSG00000237352.3|LINC01358|lncRNA|chr1:59103511:59103820:+	0	+
#Partially deleted in new
chr1	59103511	59104098	ENSG00000237352.3|LINC01358|lncRNA|chr1:59103511:59104098:+	0	+
#Deleted in new
chr15	91128722	91128810	ENSG00000185518.11|SV2B|pc|chr15:91128722:91128810:+	0	+
#Deleted in new
chr1	59126983	59127062	ENSG00000237352.3|LINC01358|lncRNA|chr1:59126983:59127062:+	0	+
#Deleted in new
chr15	91463336	91463631	ENSG00000258551.5|CRAT37|lncRNA|chr15:91463336:91463631:+	0	+
#Deleted in new
chr1	59146675	59146827	ENSG00000224609.6|HSD52|lncRNA|chr1:59146675:59146827:-	0	-
#Deleted in new
chr1	59146675	59146834	ENSG00000224609.6|HSD52|lncRNA|chr1:59146675:59146834:-	0	-
#Deleted in new
chr1	59146675	59146875	ENSG00000224609.6|HSD52|lncRNA|chr1:59146675:59146875:-	0	-
#Deleted in new
chr15	91473220	91473316	ENSG00000258551.5|CRAT37|lncRNA|chr15:91473220:91473316:+	0	+
#Deleted in new
chr15	91489386	91489477	ENSG00000258551.5|CRAT37|lncRNA|chr15:91489386:91489477:+	0	+
#Deleted in new
chr15	91493192	91494850	ENSG00000258551.5|CRAT37|lncRNA|chr15:91493192:91494850:+	0	+
#Partially deleted in new
chr1	59149900	59150550	ENSG00000237352.3|LINC01358|lncRNA|chr1:59149900:59150550:+	0	+
#Deleted in new
chr15	91643016	91643398	ENSG00000258765.1|AC107958.2|lncRNA|chr15:91643016:91643398:-	0	-
#Deleted in new
chr15	91649045	91649114	ENSG00000258765.1|AC107958.2|lncRNA|chr15:91649045:91649114:-	0	-
#Partially deleted in new
chr1	59184430	59184580	ENSG00000237352.3|LINC01358|lncRNA|chr1:59184430:59184580:+	0	+
#Deleted in new
chr15	91889100	91889205	ENSG00000176463.13|SLCO3A1|pc|chr15:91889100:91889205:+	0	+
#Deleted in new
chr1	59203094	59203306	ENSG00000224609.6|HSD52|lncRNA|chr1:59203094:59203306:-	0	-
#Deleted in new
chr1	59203094	59203468	ENSG00000224609.6|HSD52|lncRNA|chr1:59203094:59203468:-	0	-
#Deleted in new
chr1	59203410	59203685	ENSG00000237352.3|LINC01358|lncRNA|chr1:59203410:59203685:+	0	+
#Deleted in new
chr1	59208010	59208087	ENSG00000224609.6|HSD52|lncRNA|chr1:59208010:59208087:-	0	-
#Deleted in new
chr1	59208010	59208105	ENSG00000224609.6|HSD52|lncRNA|chr1:59208010:59208105:-	0	-
#Deleted in new
chr1	59208010	59208121	ENSG00000224609.6|HSD52|lncRNA|chr1:59208010:59208121:-	0	-
#Deleted in new
chr15	92155192	92155269	ENSG00000176463.13|SLCO3A1|pc|chr15:92155192:92155269:+	0	+
#Partially deleted in new
chr15	92313040	92313185	ENSG00000260661.1|AC116903.2|lncRNA|chr15:92313040:92313185:-	0	-
#Partially deleted in new
chr15	92567817	92568291	ENSG00000258647.5|LINC00930|lncRNA|chr15:92567817:92568291:-	0	-
#Deleted in new
chr15	92634304	92634665	ENSG00000275965.1|AC091544.8|lncRNA|chr15:92634304:92634665:+	0	+
#Deleted in new
chr15	92639157	92639244	ENSG00000185442.12|FAM174B|pc|chr15:92639157:92639244:-	0	-
#Partially deleted in new
chr15	92667897	92668043	ENSG00000185442.12|FAM174B|pc|chr15:92667897:92668043:-	0	-
#Deleted in new
chr15	92699039	92699163	ENSG00000185442.12|FAM174B|pc|chr15:92699039:92699163:-	0	-
#Deleted in new
chr15	92699039	92699163	ENSG00000272298.1|AC091544.7|lncRNA|chr15:92699039:92699163:-	0	-
#Deleted in new
chr15	92724161	92724277	ENSG00000272298.1|AC091544.7|lncRNA|chr15:92724161:92724277:-	0	-
#Split in new
chr15	92779756	92781492	ENSG00000260361.1|AC106028.3|lncRNA|chr15:92779756:92781492:-	0	-
#Deleted in new
chr15	92782054	92782141	ENSG00000185442.12|FAM174B|pc|chr15:92782054:92782141:-	0	-
#Partially deleted in new
chr15	92788195	92788472	ENSG00000185442.12|FAM174B|pc|chr15:92788195:92788472:-	0	-
#Deleted in new
chr15	92805769	92806114	ENSG00000258922.1|AC106028.2|lncRNA|chr15:92805769:92806114:-	0	-
#Deleted in new
chr15	92808448	92808567	ENSG00000258922.1|AC106028.2|lncRNA|chr15:92808448:92808567:-	0	-
#Deleted in new
chr15	92808450	92809057	ENSG00000274215.1|AC106028.4|lncRNA|chr15:92808450:92809057:+	0	+
#Deleted in new
chr15	92808843	92809013	ENSG00000185442.12|FAM174B|pc|chr15:92808843:92809013:-	0	-
#Deleted in new
chr15	92892003	92892034	ENSG00000272888.5|LINC01578|lncRNA|chr15:92892003:92892034:+	0	+
#Deleted in new
chr15	92892003	92892072	ENSG00000272888.5|LINC01578|lncRNA|chr15:92892003:92892072:+	0	+
#Deleted in new
chr15	92892003	92892072	ENSG00000279765.3|AC013394.1|pc|chr15:92892003:92892072:+	0	+
#Deleted in new
chr15	92914973	92915001	ENSG00000173575.20|CHD2|pc|chr15:92914973:92915001:+	0	+
#Deleted in new
chr15	92921376	92921457	ENSG00000173575.20|CHD2|pc|chr15:92921376:92921457:+	0	+
#Deleted in new
chr15	92946247	92946340	ENSG00000173575.20|CHD2|pc|chr15:92946247:92946340:+	0	+
#Deleted in new
chr15	92950401	92950431	ENSG00000173575.20|CHD2|pc|chr15:92950401:92950431:+	0	+
#Deleted in new
chr15	92965241	92965373	ENSG00000173575.20|CHD2|pc|chr15:92965241:92965373:+	0	+
#Duplicated in new
chr1	59296637	59296907	ENSG00000172456.17|FGGY|pc|chr1:59296637:59296907:+	0	+
#Deleted in new
chr15	92991692	92991759	ENSG00000173575.20|CHD2|pc|chr15:92991692:92991759:+	0	+
#Split in new
chr15	93035272	93045705	ENSG00000182175.13|RGMA|pc|chr15:93035272:93045705:-	0	-
#Partially deleted in new
chr15	93260147	93260475	ENSG00000258888.1|AC112693.1|lncRNA|chr15:93260147:93260475:+	0	+
#Deleted in new
chr15	93373509	93373585	ENSG00000257060.6|AC091078.1|lncRNA|chr15:93373509:93373585:+	0	+
#Deleted in new
chr15	93569437	93569483	ENSG00000257060.6|AC091078.1|lncRNA|chr15:93569437:93569483:+	0	+
#Deleted in new
chr15	93731348	93731351	ENSG00000258754.7|LINC01579|lncRNA|chr15:93731348:93731351:-	0	-
#Deleted in new
chr15	93801444	93801627	ENSG00000258754.7|LINC01579|lncRNA|chr15:93801444:93801627:-	0	-
#Deleted in new
chr15	93820990	93821100	ENSG00000258754.7|LINC01579|lncRNA|chr15:93820990:93821100:-	0	-
#Deleted in new
chr15	93828979	93829174	ENSG00000258754.7|LINC01579|lncRNA|chr15:93828979:93829174:-	0	-
#Deleted in new
chr15	93852817	93852981	ENSG00000259123.1|AC103996.3|lncRNA|chr15:93852817:93852981:-	0	-
#Deleted in new
chr15	93863108	93863216	ENSG00000258476.5|LINC02207|lncRNA|chr15:93863108:93863216:+	0	+
#Deleted in new
chr15	93863741	93864155	ENSG00000258476.5|LINC02207|lncRNA|chr15:93863741:93864155:+	0	+
#Deleted in new
chr15	93874309	93874453	ENSG00000258754.7|LINC01579|lncRNA|chr15:93874309:93874453:-	0	-
#Deleted in new
chr15	93882838	93883072	ENSG00000258831.1|AC103996.2|lncRNA|chr15:93882838:93883072:+	0	+
#Partially deleted in new
chr15	93897422	93897451	ENSG00000258754.7|LINC01579|lncRNA|chr15:93897422:93897451:-	0	-
#Deleted in new
chr15	93899262	93899336	ENSG00000258754.7|LINC01579|lncRNA|chr15:93899262:93899336:-	0	-
#Deleted in new
chr15	93899263	93899336	ENSG00000258754.7|LINC01579|lncRNA|chr15:93899263:93899336:-	0	-
#Deleted in new
chr15	93900035	93900135	ENSG00000258754.7|LINC01579|lncRNA|chr15:93900035:93900135:-	0	-
#Deleted in new
chr15	93900035	93900137	ENSG00000258754.7|LINC01579|lncRNA|chr15:93900035:93900137:-	0	-
#Deleted in new
chr15	93900035	93900337	ENSG00000258754.7|LINC01579|lncRNA|chr15:93900035:93900337:-	0	-
#Deleted in new
chr15	93900350	93900599	ENSG00000258754.7|LINC01579|lncRNA|chr15:93900350:93900599:-	0	-
#Deleted in new
chr15	93900700	93900778	ENSG00000258785.5|LINC01580|lncRNA|chr15:93900700:93900778:+	0	+
#Deleted in new
chr15	93969593	93969695	ENSG00000258785.5|LINC01580|lncRNA|chr15:93969593:93969695:+	0	+
#Deleted in new
chr15	93974995	93975406	ENSG00000259724.1|LINC01581|lncRNA|chr15:93974995:93975406:-	0	-
#Deleted in new
chr15	94028464	94028738	ENSG00000258754.7|LINC01579|lncRNA|chr15:94028464:94028738:-	0	-
#Deleted in new
chr15	94038350	94038412	ENSG00000258754.7|LINC01579|lncRNA|chr15:94038350:94038412:-	0	-
#Partially deleted in new
chr15	94064368	94065292	ENSG00000258754.7|LINC01579|lncRNA|chr15:94064368:94065292:-	0	-
#Deleted in new
chr15	94066768	94066879	ENSG00000258754.7|LINC01579|lncRNA|chr15:94066768:94066879:-	0	-
#Deleted in new
chr1	594234	594574	ENSG00000235146.2|AC114498.1|lncRNA|chr1:594234:594574:+	0	+
#Deleted in new
chr1	594234	594768	ENSG00000235146.2|AC114498.1|lncRNA|chr1:594234:594768:+	0	+
#Deleted in new
chr15	94278153	94278263	ENSG00000140563.14|MCTP2|pc|chr15:94278153:94278263:+	0	+
#Deleted in new
chr15	94292850	94292964	ENSG00000140563.14|MCTP2|pc|chr15:94292850:94292964:+	0	+
#Deleted in new
chr15	95034383	95034744	ENSG00000258433.1|AC087633.1|lncRNA|chr15:95034383:95034744:-	0	-
#Partially deleted in new
chr15	95080094	95080261	ENSG00000258773.1|AC087636.1|lncRNA|chr15:95080094:95080261:-	0	-
#Deleted in new
chr15	95092130	95092270	ENSG00000258773.1|AC087636.1|lncRNA|chr15:95092130:95092270:-	0	-
#Deleted in new
chr15	95212680	95212879	ENSG00000248441.6|LINC01197|lncRNA|chr15:95212680:95212879:-	0	-
#Deleted in new
chr15	95255505	95255888	ENSG00000248441.6|LINC01197|lncRNA|chr15:95255505:95255888:-	0	-
#Deleted in new
chr15	95491498	95491549	ENSG00000258489.3|AC027013.1|lncRNA|chr15:95491498:95491549:-	0	-
#Deleted in new
chr15	95493649	95493770	ENSG00000258489.3|AC027013.1|lncRNA|chr15:95493649:95493770:-	0	-
#Deleted in new
chr15	95638345	95638519	ENSG00000275016.4|AC015574.1|lncRNA|chr15:95638345:95638519:+	0	+
#Deleted in new
chr15	95638348	95638519	ENSG00000275016.4|AC015574.1|lncRNA|chr15:95638348:95638519:+	0	+
#Deleted in new
chr15	95638349	95638519	ENSG00000275016.4|AC015574.1|lncRNA|chr15:95638349:95638519:+	0	+
#Deleted in new
chr15	95638493	95638519	ENSG00000275016.4|AC015574.1|lncRNA|chr15:95638493:95638519:+	0	+
#Deleted in new
chr15	95730363	95730442	ENSG00000275016.4|AC015574.1|lncRNA|chr15:95730363:95730442:+	0	+
#Deleted in new
chr15	95779135	95779384	ENSG00000275016.4|AC015574.1|lncRNA|chr15:95779135:95779384:+	0	+
#Deleted in new
chr15	95810078	95810116	ENSG00000275016.4|AC015574.1|lncRNA|chr15:95810078:95810116:+	0	+
#Deleted in new
chr15	96064276	96064357	ENSG00000259702.2|AC024337.1|lncRNA|chr15:96064276:96064357:-	0	-
#Deleted in new
chr15	96110039	96110392	ENSG00000247809.7|NR2F2-AS1|lncRNA|chr15:96110039:96110392:-	0	-
#Partially deleted in new
chr15	96112627	96116051	ENSG00000280048.1|AC012409.5|lncRNA|chr15:96112627:96116051:-	0	-
#Deleted in new
chr15	96118842	96118976	ENSG00000247809.7|NR2F2-AS1|lncRNA|chr15:96118842:96118976:-	0	-
#Deleted in new
chr15	96127161	96127413	ENSG00000247809.7|NR2F2-AS1|lncRNA|chr15:96127161:96127413:-	0	-
#Deleted in new
chr15	96127368	96127413	ENSG00000247809.7|NR2F2-AS1|lncRNA|chr15:96127368:96127413:-	0	-
#Deleted in new
chr15	96135302	96135469	ENSG00000247809.7|NR2F2-AS1|lncRNA|chr15:96135302:96135469:-	0	-
#Deleted in new
chr15	96235784	96235909	ENSG00000259763.1|LINC02157|lncRNA|chr15:96235784:96235909:+	0	+
#Partially deleted in new
chr15	96236381	96236703	ENSG00000259763.1|LINC02157|lncRNA|chr15:96236381:96236703:+	0	+
#Deleted in new
chr15	96269814	96269996	ENSG00000247809.7|NR2F2-AS1|lncRNA|chr15:96269814:96269996:-	0	-
#Deleted in new
chr15	96269847	96269996	ENSG00000247809.7|NR2F2-AS1|lncRNA|chr15:96269847:96269996:-	0	-
#Deleted in new
chr15	96401452	96401571	ENSG00000259542.5|AC087477.5|lncRNA|chr15:96401452:96401571:-	0	-
#Deleted in new
chr15	96403509	96403803	ENSG00000259275.2|AC087477.2|lncRNA|chr15:96403509:96403803:+	0	+
#Deleted in new
chr1	59641279	59641351	ENSG00000172456.17|FGGY|pc|chr1:59641279:59641351:+	0	+
#Deleted in new
chr15	97272176	97272524	ENSG00000259403.1|AC020704.1|lncRNA|chr15:97272176:97272524:-	0	-
#Deleted in new
chr15	97295880	97296323	ENSG00000259485.1|LINC02253|lncRNA|chr15:97295880:97296323:+	0	+
#Deleted in new
chr15	97415789	97415824	ENSG00000259485.1|LINC02253|lncRNA|chr15:97415789:97415824:+	0	+
#Deleted in new
chr15	97427650	97427952	ENSG00000259664.2|LINC02254|lncRNA|chr15:97427650:97427952:-	0	-
#Deleted in new
chr15	97429769	97429889	ENSG00000259485.1|LINC02253|lncRNA|chr15:97429769:97429889:+	0	+
#Deleted in new
chr15	97540596	97540866	ENSG00000259582.3|AC026523.1|lncRNA|chr15:97540596:97540866:-	0	-
#Deleted in new
chr15	97541639	97541748	ENSG00000259582.3|AC026523.1|lncRNA|chr15:97541639:97541748:-	0	-
#Deleted in new
chr15	97572184	97572618	ENSG00000251209.7|LINC00923|lncRNA|chr15:97572184:97572618:-	0	-
#Partially deleted in new
chr15	97631022	97631223	ENSG00000251209.7|LINC00923|lncRNA|chr15:97631022:97631223:-	0	-
#Deleted in new
chr15	97647982	97648404	ENSG00000251209.7|LINC00923|lncRNA|chr15:97647982:97648404:-	0	-
#Partially deleted in new
chr15	97665603	97665715	ENSG00000251209.7|LINC00923|lncRNA|chr15:97665603:97665715:-	0	-
#Deleted in new
chr15	97665623	97665715	ENSG00000251209.7|LINC00923|lncRNA|chr15:97665623:97665715:-	0	-
#Deleted in new
chr15	97670235	97670337	ENSG00000251209.7|LINC00923|lncRNA|chr15:97670235:97670337:-	0	-
#Deleted in new
chr15	97673130	97673257	ENSG00000251209.7|LINC00923|lncRNA|chr15:97673130:97673257:-	0	-
#Deleted in new
chr15	97703718	97703792	ENSG00000251209.7|LINC00923|lncRNA|chr15:97703718:97703792:-	0	-
#Deleted in new
chr15	97703928	97704022	ENSG00000251209.7|LINC00923|lncRNA|chr15:97703928:97704022:-	0	-
#Deleted in new
chr15	97703928	97704108	ENSG00000251209.7|LINC00923|lncRNA|chr15:97703928:97704108:-	0	-
#Deleted in new
chr1	59774050	59774124	ENSG00000172456.17|FGGY|pc|chr1:59774050:59774124:+	0	+
#Deleted in new
chr15	97742217	97743483	ENSG00000251209.7|LINC00923|lncRNA|chr15:97742217:97743483:-	0	-
#Deleted in new
chr15	97742621	97743483	ENSG00000251209.7|LINC00923|lncRNA|chr15:97742621:97743483:-	0	-
#Deleted in new
chr15	97743329	97743483	ENSG00000251209.7|LINC00923|lncRNA|chr15:97743329:97743483:-	0	-
#Deleted in new
chr15	97758489	97758661	ENSG00000251209.7|LINC00923|lncRNA|chr15:97758489:97758661:-	0	-
#Deleted in new
chr15	97984918	97985126	ENSG00000259478.2|AC024651.1|lncRNA|chr15:97984918:97985126:-	0	-
#Deleted in new
chr15	98046666	98046739	ENSG00000259199.1|AC022523.1|lncRNA|chr15:98046666:98046739:-	0	-
#Partially deleted in new
chr1	59808412	59810647	ENSG00000172456.17|FGGY|pc|chr1:59808412:59810647:+	0	+
#Deleted in new
chr15	98103234	98103712	ENSG00000259611.1|LINC01582|lncRNA|chr15:98103234:98103712:-	0	-
#Deleted in new
chr15	98131433	98131607	ENSG00000259320.1|AC022523.3|lncRNA|chr15:98131433:98131607:-	0	-
#Partially deleted in new
chr1	59815171	59815351	ENSG00000134709.10|HOOK1|pc|chr1:59815171:59815351:+	0	+
#Deleted in new
chr15	98282074	98282120	ENSG00000259041.1|AC015722.1|lncRNA|chr15:98282074:98282120:+	0	+
#Deleted in new
chr15	98284057	98284308	ENSG00000259041.1|AC015722.1|lncRNA|chr15:98284057:98284308:+	0	+
#Deleted in new
chr15	98285819	98285907	ENSG00000259041.1|AC015722.1|lncRNA|chr15:98285819:98285907:+	0	+
#Deleted in new
chr15	98324272	98324420	ENSG00000277987.1|LINC02351|lncRNA|chr15:98324272:98324420:-	0	-
#Deleted in new
chr15	98327353	98327494	ENSG00000277987.1|LINC02351|lncRNA|chr15:98327353:98327494:-	0	-
#Partially deleted in new
chr15	98437161	98439750	ENSG00000283597.2|FAM169B|pc|chr15:98437161:98439750:-	0	-
#Deleted in new
chr15	98439630	98439750	ENSG00000283597.2|FAM169B|pc|chr15:98439630:98439750:-	0	-
#Partially deleted in new
chr15	98518799	98518892	ENSG00000283597.2|FAM169B|pc|chr15:98518799:98518892:-	0	-
#Deleted in new
chr15	98880658	98880852	ENSG00000259621.1|AC069029.1|lncRNA|chr15:98880658:98880852:-	0	-
#Deleted in new
chr15	98890340	98890468	ENSG00000140443.13|IGF1R|pc|chr15:98890340:98890468:+	0	+
#Deleted in new
chr15	98890541	98890755	ENSG00000140443.13|IGF1R|pc|chr15:98890541:98890755:+	0	+
#Deleted in new
chr15	98965988	98966070	ENSG00000259475.1|AC036108.1|lncRNA|chr15:98965988:98966070:-	0	-
#Deleted in new
chr15	99001186	99001279	ENSG00000183571.10|PGPEP1L|pc|chr15:99001186:99001279:-	0	-
#Deleted in new
chr15	99007358	99007795	ENSG00000183571.10|PGPEP1L|pc|chr15:99007358:99007795:-	0	-
#Deleted in new
chr15	99100722	99100851	ENSG00000259475.1|AC036108.1|lncRNA|chr15:99100722:99100851:-	0	-
#Deleted in new
chr15	99139695	99139744	ENSG00000103852.12|TTC23|pc|chr15:99139695:99139744:-	0	-
#Deleted in new
chr15	99151292	99151386	ENSG00000103852.12|TTC23|pc|chr15:99151292:99151386:-	0	-
#Partially deleted in new
chr15	99157230	99161140	ENSG00000259921.1|AC022819.1|lncRNA|chr15:99157230:99161140:-	0	-
#Deleted in new
chr15	99234987	99235078	ENSG00000103852.12|TTC23|pc|chr15:99234987:99235078:-	0	-
#Deleted in new
chr15	99234987	99235080	ENSG00000103852.12|TTC23|pc|chr15:99234987:99235080:-	0	-
#Deleted in new
chr15	99245388	99245510	ENSG00000103852.12|TTC23|pc|chr15:99245388:99245510:-	0	-
#Deleted in new
chr15	99297271	99297338	ENSG00000168904.14|LRRC28|pc|chr15:99297271:99297338:+	0	+
#Deleted in new
chr15	99320602	99320735	ENSG00000168904.14|LRRC28|pc|chr15:99320602:99320735:+	0	+
#Deleted in new
chr15	99326512	99326588	ENSG00000168904.14|LRRC28|pc|chr15:99326512:99326588:+	0	+
#Deleted in new
chr15	99401249	99401315	ENSG00000259760.1|AC015660.3|lncRNA|chr15:99401249:99401315:-	0	-
#Deleted in new
chr15	99620890	99621080	ENSG00000068305.17|MEF2A|pc|chr15:99620890:99621080:+	0	+
#Deleted in new
chr15	99720783	99720966	ENSG00000183060.15|LYSMD4|pc|chr15:99720783:99720966:-	0	-
#Partially deleted in new
chr15	99732928	99733028	ENSG00000183060.15|LYSMD4|pc|chr15:99732928:99733028:-	0	-
#Deleted in new
chr15	99812972	99813086	ENSG00000259363.5|AC090825.1|lncRNA|chr15:99812972:99813086:+	0	+
#Partially deleted in new
chr1	59988485	59988568	ENSG00000162598.13|C1orf87|pc|chr1:59988485:59988568:-	0	-
#Deleted in new
chr15	99970214	99970355	ENSG00000254744.3|AC084855.1|lncRNA|chr15:99970214:99970355:+	0	+
#Deleted in new
chr15	99976480	99976608	ENSG00000259219.1|AC084855.2|lncRNA|chr15:99976480:99976608:+	0	+
#Partially deleted in new
chr15	99978509	99980774	ENSG00000259219.1|AC084855.2|lncRNA|chr15:99978509:99980774:+	0	+
#Deleted in new
chr1	6018634	6018835	ENSG00000069424.14|KCNAB2|pc|chr1:6018634:6018835:+	0	+
#Deleted in new
chr1	6027296	6027459	ENSG00000069424.14|KCNAB2|pc|chr1:6027296:6027459:+	0	+
#Deleted in new
chr1	60515715	60517038	ENSG00000226476.3|LINC01748|lncRNA|chr1:60515715:60517038:-	0	-
#Deleted in new
chr1	60519962	60524106	ENSG00000226476.3|LINC01748|lncRNA|chr1:60519962:60524106:-	0	-
#Deleted in new
chr1	60528918	60529249	ENSG00000226476.3|LINC01748|lncRNA|chr1:60528918:60529249:-	0	-
#Deleted in new
chr1	60537680	60537788	ENSG00000226476.3|LINC01748|lncRNA|chr1:60537680:60537788:-	0	-
#Deleted in new
chr1	60554472	60554568	ENSG00000226476.3|LINC01748|lncRNA|chr1:60554472:60554568:-	0	-
#Deleted in new
chr1	60595537	60595699	ENSG00000226476.3|LINC01748|lncRNA|chr1:60595537:60595699:-	0	-
#Deleted in new
chr1	60595537	60596206	ENSG00000226476.3|LINC01748|lncRNA|chr1:60595537:60596206:-	0	-
#Deleted in new
chr1	60595537	60596373	ENSG00000226476.3|LINC01748|lncRNA|chr1:60595537:60596373:-	0	-
#Deleted in new
chr1	60596248	60596373	ENSG00000226476.3|LINC01748|lncRNA|chr1:60596248:60596373:-	0	-
#Partially deleted in new
chr1	60600126	60601677	ENSG00000226476.3|LINC01748|lncRNA|chr1:60600126:60601677:-	0	-
#Deleted in new
chr1	60640010	60640126	ENSG00000226476.3|LINC01748|lncRNA|chr1:60640010:60640126:-	0	-
#Deleted in new
chr1	60640271	60640491	ENSG00000226476.3|LINC01748|lncRNA|chr1:60640271:60640491:-	0	-
#Partially deleted in new
chr1	60659630	60661470	ENSG00000231252.2|AC099792.1|lncRNA|chr1:60659630:60661470:-	0	-
#Deleted in new
chr1	60660226	60661470	ENSG00000231252.2|AC099792.1|lncRNA|chr1:60660226:60661470:-	0	-
#Deleted in new
chr1	60677195	60677412	ENSG00000231252.2|AC099792.1|lncRNA|chr1:60677195:60677412:-	0	-
#Deleted in new
chr1	60732446	60732508	ENSG00000231252.2|AC099792.1|lncRNA|chr1:60732446:60732508:-	0	-
#Deleted in new
chr1	60825335	60825385	ENSG00000231252.2|AC099792.1|lncRNA|chr1:60825335:60825385:-	0	-
#Deleted in new
chr1	60825335	60825584	ENSG00000231252.2|AC099792.1|lncRNA|chr1:60825335:60825584:-	0	-
#Deleted in new
chr1	60826421	60826585	ENSG00000231252.2|AC099792.1|lncRNA|chr1:60826421:60826585:-	0	-
#Deleted in new
chr1	6085739	6085793	ENSG00000069424.14|KCNAB2|pc|chr1:6085739:6085793:+	0	+
#Deleted in new
chr1	6085739	6086363	ENSG00000069424.14|KCNAB2|pc|chr1:6085739:6086363:+	0	+
#Deleted in new
chr1	6086157	6086362	ENSG00000069424.14|KCNAB2|pc|chr1:6086157:6086362:+	0	+
#Deleted in new
chr1	60940238	60940631	ENSG00000237928.5|NFIA-AS2|lncRNA|chr1:60940238:60940631:-	0	-
#Deleted in new
chr1	60940394	60940631	ENSG00000237928.5|NFIA-AS2|lncRNA|chr1:60940394:60940631:-	0	-
#Deleted in new
chr1	60941179	60941252	ENSG00000237928.5|NFIA-AS2|lncRNA|chr1:60941179:60941252:-	0	-
#Partially deleted in new
chr1	6097268	6098561	ENSG00000069424.14|KCNAB2|pc|chr1:6097268:6098561:+	0	+
#Deleted in new
chr16	1000732	1000841	ENSG00000260496.3|AC009041.1|lncRNA|chr16:1000732:1000841:-	0	-
#Deleted in new
chr16	1000842	1000926	ENSG00000260496.3|AC009041.1|lncRNA|chr16:1000842:1000926:-	0	-
#Partially deleted in new
chr16	10027560	10027700	ENSG00000183454.16|GRIN2A|pc|chr16:10027560:10027700:-	0	-
#Deleted in new
chr16	10031324	10031564	ENSG00000183454.16|GRIN2A|pc|chr16:10031324:10031564:-	0	-
#Deleted in new
chr16	10031324	10031580	ENSG00000183454.16|GRIN2A|pc|chr16:10031324:10031580:-	0	-
#Deleted in new
chr16	10326433	10326512	ENSG00000166669.13|ATF7IP2|pc|chr16:10326433:10326512:+	0	+
#Deleted in new
chr16	10344000	10344190	ENSG00000166669.13|ATF7IP2|pc|chr16:10344000:10344190:+	0	+
#Partially deleted in new
chr16	10351439	10352752	ENSG00000260756.1|AC131649.1|lncRNA|chr16:10351439:10352752:-	0	-
#Deleted in new
chr16	10385151	10385253	ENSG00000166669.13|ATF7IP2|pc|chr16:10385151:10385253:+	0	+
#Deleted in new
chr16	10414573	10414612	ENSG00000166669.13|ATF7IP2|pc|chr16:10414573:10414612:+	0	+
#Deleted in new
chr16	10419580	10419620	ENSG00000166669.13|ATF7IP2|pc|chr16:10419580:10419620:+	0	+
#Deleted in new
chr16	10419580	10419623	ENSG00000166669.13|ATF7IP2|pc|chr16:10419580:10419623:+	0	+
#Deleted in new
chr16	10428867	10429004	ENSG00000166669.13|ATF7IP2|pc|chr16:10428867:10429004:+	0	+
#Deleted in new
chr16	10428867	10429016	ENSG00000166669.13|ATF7IP2|pc|chr16:10428867:10429016:+	0	+
#Deleted in new
chr16	10428900	10429016	ENSG00000166669.13|ATF7IP2|pc|chr16:10428900:10429016:+	0	+
#Deleted in new
chr16	10445308	10449747	ENSG00000279662.1|AC131649.2|lncRNA|chr16:10445308:10449747:-	0	-
#Deleted in new
chr16	10454021	10454339	ENSG00000166669.13|ATF7IP2|pc|chr16:10454021:10454339:+	0	+
#Deleted in new
chr16	10514841	10515232	ENSG00000260468.1|LINC01290|lncRNA|chr16:10514841:10515232:-	0	-
#Deleted in new
chr16	10528091	10528202	ENSG00000260468.1|LINC01290|lncRNA|chr16:10528091:10528202:-	0	-
#Partially deleted in new
chr16	10544179	10547677	ENSG00000213853.9|EMP2|pc|chr16:10544179:10547677:-	0	-
#Partially deleted in new
chr16	1064092	1066526	ENSG00000261713.6|SSTR5-AS1|lncRNA|chr16:1064092:1066526:-	0	-
#Deleted in new
chr16	1065239	1065482	ENSG00000261720.1|AC009041.3|lncRNA|chr16:1065239:1065482:+	0	+
#Deleted in new
chr16	1065866	1066502	ENSG00000261720.1|AC009041.3|lncRNA|chr16:1065866:1066502:+	0	+
#Deleted in new
chr16	1066247	1066526	ENSG00000261713.6|SSTR5-AS1|lncRNA|chr16:1066247:1066526:-	0	-
#Deleted in new
chr16	1066375	1066526	ENSG00000261713.6|SSTR5-AS1|lncRNA|chr16:1066375:1066526:-	0	-
#Deleted in new
chr16	1066493	1066526	ENSG00000261713.6|SSTR5-AS1|lncRNA|chr16:1066493:1066526:-	0	-
#Deleted in new
chr16	1066918	1067025	ENSG00000261713.6|SSTR5-AS1|lncRNA|chr16:1066918:1067025:-	0	-
#Deleted in new
chr16	1066918	1067043	ENSG00000261713.6|SSTR5-AS1|lncRNA|chr16:1066918:1067043:-	0	-
#Deleted in new
chr16	1066918	1067236	ENSG00000261713.6|SSTR5-AS1|lncRNA|chr16:1066918:1067236:-	0	-
#Deleted in new
chr16	10671709	10671778	ENSG00000153060.7|TEKT5|pc|chr16:10671709:10671778:-	0	-
#Deleted in new
chr16	10691272	10691399	ENSG00000263279.1|AC007595.1|lncRNA|chr16:10691272:10691399:+	0	+
#Partially deleted in new
chr16	10763540	10763834	ENSG00000103274.10|NUBP1|pc|chr16:10763540:10763834:+	0	+
#Deleted in new
chr16	10763557	10763763	ENSG00000166676.14|TVP23A|pc|chr16:10763557:10763763:-	0	-
#Deleted in new
chr16	10765023	10765144	ENSG00000103274.10|NUBP1|pc|chr16:10765023:10765144:+	0	+
#Deleted in new
chr16	10766037	10766153	ENSG00000166676.14|TVP23A|pc|chr16:10766037:10766153:-	0	-
#Split in new
chr16	10766675	10769101	ENSG00000166676.14|TVP23A|pc|chr16:10766675:10769101:-	0	-
#Split in new
chr16	10766675	10769478	ENSG00000166676.14|TVP23A|pc|chr16:10766675:10769478:-	0	-
#Split in new
chr16	10766680	10769478	ENSG00000166676.14|TVP23A|pc|chr16:10766680:10769478:-	0	-
#Deleted in new
chr16	1077623	1077712	ENSG00000261713.6|SSTR5-AS1|lncRNA|chr16:1077623:1077712:-	0	-
#Deleted in new
chr16	10800296	10800338	ENSG00000166676.14|TVP23A|pc|chr16:10800296:10800338:-	0	-
#Deleted in new
chr16	10864913	10865050	ENSG00000262151.1|AC133065.1|lncRNA|chr16:10864913:10865050:-	0	-
#Partially deleted in new
chr16	10888314	10888638	ENSG00000262151.1|AC133065.1|lncRNA|chr16:10888314:10888638:-	0	-
#Partially deleted in new
chr16	1090004	1090594	ENSG00000184471.7|C1QTNF8|pc|chr16:1090004:1090594:-	0	-
#Partially deleted in new
chr16	10901558	10902037	ENSG00000179583.18|CIITA|pc|chr16:10901558:10902037:+	0	+
#Deleted in new
chr16	10901797	10902184	ENSG00000179583.18|CIITA|pc|chr16:10901797:10902184:+	0	+
#Deleted in new
chr16	10902037	10902104	ENSG00000179583.18|CIITA|pc|chr16:10902037:10902104:+	0	+
#Deleted in new
chr16	10902037	10902160	ENSG00000179583.18|CIITA|pc|chr16:10902037:10902160:+	0	+
#Deleted in new
chr16	10902037	10902184	ENSG00000179583.18|CIITA|pc|chr16:10902037:10902184:+	0	+
#Deleted in new
chr16	1090516	1090594	ENSG00000184471.7|C1QTNF8|pc|chr16:1090516:1090594:-	0	-
#Deleted in new
chr16	10931824	10932222	ENSG00000179583.18|CIITA|pc|chr16:10931824:10932222:+	0	+
#Deleted in new
chr16	10933843	10934004	ENSG00000182108.9|DEXI|pc|chr16:10933843:10934004:-	0	-
#Deleted in new
chr16	1094571	1094614	ENSG00000184471.7|C1QTNF8|pc|chr16:1094571:1094614:-	0	-
#Deleted in new
chr16	1094615	1094633	ENSG00000184471.7|C1QTNF8|pc|chr16:1094615:1094633:-	0	-
#Deleted in new
chr16	1094637	1094661	ENSG00000184471.7|C1QTNF8|pc|chr16:1094637:1094661:-	0	-
#Deleted in new
chr16	1094663	1094696	ENSG00000184471.7|C1QTNF8|pc|chr16:1094663:1094696:-	0	-
#Deleted in new
chr16	1094697	1094933	ENSG00000184471.7|C1QTNF8|pc|chr16:1094697:1094933:-	0	-
#Deleted in new
chr16	1094714	1094933	ENSG00000184471.7|C1QTNF8|pc|chr16:1094714:1094933:-	0	-
#Deleted in new
chr16	1095614	1095647	ENSG00000184471.7|C1QTNF8|pc|chr16:1095614:1095647:-	0	-
#Deleted in new
chr16	1095614	1095788	ENSG00000184471.7|C1QTNF8|pc|chr16:1095614:1095788:-	0	-
#Deleted in new
chr16	11036046	11036092	ENSG00000038532.14|CLEC16A|pc|chr16:11036046:11036092:+	0	+
#Partially deleted in new
chr16	11039753	11042363	ENSG00000038532.14|CLEC16A|pc|chr16:11039753:11042363:+	0	+
#Deleted in new
chr16	11066495	11066753	ENSG00000262020.1|AC007014.1|lncRNA|chr16:11066495:11066753:-	0	-
#Deleted in new
chr16	11070523	11070668	ENSG00000262020.1|AC007014.1|lncRNA|chr16:11070523:11070668:-	0	-
#Deleted in new
chr16	11196176	11196307	ENSG00000263033.2|AC007220.1|lncRNA|chr16:11196176:11196307:+	0	+
#Deleted in new
chr16	11196618	11196673	ENSG00000263033.2|AC007220.1|lncRNA|chr16:11196618:11196673:+	0	+
#Deleted in new
chr16	11249618	11249778	ENSG00000175643.8|RMI2|pc|chr16:11249618:11249778:+	0	+
#Deleted in new
chr16	11249648	11249778	ENSG00000175643.8|RMI2|pc|chr16:11249648:11249778:+	0	+
#Deleted in new
chr16	11295215	11295294	ENSG00000175643.8|RMI2|pc|chr16:11295215:11295294:+	0	+
#Partially deleted in new
chr16	11316140	11317036	ENSG00000175643.8|RMI2|pc|chr16:11316140:11317036:+	0	+
#Deleted in new
chr16	11316451	11316884	ENSG00000175643.8|RMI2|pc|chr16:11316451:11316884:+	0	+
#Deleted in new
chr16	11316451	11316961	ENSG00000175643.8|RMI2|pc|chr16:11316451:11316961:+	0	+
#Deleted in new
chr1	6113310	6113416	ENSG00000116254.17|CHD5|pc|chr1:6113310:6113416:-	0	-
#Deleted in new
chr16	11341808	11342423	ENSG00000263080.1|AC009121.2|lncRNA|chr16:11341808:11342423:-	0	-
#Partially deleted in new
chr16	11344350	11344770	ENSG00000263080.1|AC009121.2|lncRNA|chr16:11344350:11344770:-	0	-
#Partially deleted in new
chr16	11345112	11345197	ENSG00000263080.1|AC009121.2|lncRNA|chr16:11345112:11345197:-	0	-
#Partially deleted in new
chr16	11345112	11345211	ENSG00000263080.1|AC009121.2|lncRNA|chr16:11345112:11345211:-	0	-
#Deleted in new
chr16	11401265	11401406	ENSG00000188897.8|AC099489.1|pc|chr16:11401265:11401406:-	0	-
#Deleted in new
chr16	11412840	11412953	ENSG00000188897.8|AC099489.1|pc|chr16:11412840:11412953:-	0	-
#Deleted in new
chr16	11414341	11414508	ENSG00000188897.8|AC099489.1|pc|chr16:11414341:11414508:-	0	-
#Deleted in new
chr16	11414341	11414555	ENSG00000188897.8|AC099489.1|pc|chr16:11414341:11414555:-	0	-
#Partially deleted in new
chr16	11424108	11424344	ENSG00000188897.8|AC099489.1|pc|chr16:11424108:11424344:-	0	-
#Deleted in new
chr16	11442190	11442521	ENSG00000188897.8|AC099489.1|pc|chr16:11442190:11442521:-	0	-
#Deleted in new
chr16	11443383	11443460	ENSG00000188897.8|AC099489.1|pc|chr16:11443383:11443460:-	0	-
#Deleted in new
chr16	11447933	11448073	ENSG00000188897.8|AC099489.1|pc|chr16:11447933:11448073:-	0	-
#Deleted in new
chr16	11448918	11449107	ENSG00000188897.8|AC099489.1|pc|chr16:11448918:11449107:-	0	-
#Deleted in new
chr16	11460963	11461119	ENSG00000188897.8|AC099489.1|pc|chr16:11460963:11461119:-	0	-
#Deleted in new
chr16	11462116	11462303	ENSG00000188897.8|AC099489.1|pc|chr16:11462116:11462303:-	0	-
#Deleted in new
chr16	11465259	11465532	ENSG00000262999.1|AC099489.3|lncRNA|chr16:11465259:11465532:+	0	+
#Deleted in new
chr16	11467151	11467258	ENSG00000188897.8|AC099489.1|pc|chr16:11467151:11467258:-	0	-
#Deleted in new
chr16	11470614	11470723	ENSG00000262999.1|AC099489.3|lncRNA|chr16:11470614:11470723:+	0	+
#Deleted in new
chr16	11471277	11473174	ENSG00000262999.1|AC099489.3|lncRNA|chr16:11471277:11473174:+	0	+
#Deleted in new
chr16	11471653	11471817	ENSG00000188897.8|AC099489.1|pc|chr16:11471653:11471817:-	0	-
#Deleted in new
chr16	11478529	11478685	ENSG00000188897.8|AC099489.1|pc|chr16:11478529:11478685:-	0	-
#Deleted in new
chr16	1148223	1148754	ENSG00000273551.1|AC120498.8|lncRNA|chr16:1148223:1148754:-	0	-
#Deleted in new
chr16	11491700	11491755	ENSG00000188897.8|AC099489.1|pc|chr16:11491700:11491755:-	0	-
#Deleted in new
chr16	11491700	11491845	ENSG00000188897.8|AC099489.1|pc|chr16:11491700:11491845:-	0	-
#Deleted in new
chr16	11500803	11500969	ENSG00000188897.8|AC099489.1|pc|chr16:11500803:11500969:-	0	-
#Deleted in new
chr16	11502076	11502180	ENSG00000188897.8|AC099489.1|pc|chr16:11502076:11502180:-	0	-
#Deleted in new
chr16	11521951	11522112	ENSG00000188897.8|AC099489.1|pc|chr16:11521951:11522112:-	0	-
#Deleted in new
chr16	11523419	11523588	ENSG00000188897.8|AC099489.1|pc|chr16:11523419:11523588:-	0	-
#Deleted in new
chr16	11551706	11551804	ENSG00000189067.12|LITAF|pc|chr16:11551706:11551804:-	0	-
#Deleted in new
chr16	11551722	11551804	ENSG00000189067.12|LITAF|pc|chr16:11551722:11551804:-	0	-
#Deleted in new
chr16	11551772	11551804	ENSG00000189067.12|LITAF|pc|chr16:11551772:11551804:-	0	-
#Partially deleted in new
chr16	11561145	11561574	ENSG00000189067.12|LITAF|pc|chr16:11561145:11561574:-	0	-
#Deleted in new
chr16	11587150	11587247	ENSG00000189067.12|LITAF|pc|chr16:11587150:11587247:-	0	-
#Deleted in new
chr16	11587150	11587289	ENSG00000189067.12|LITAF|pc|chr16:11587150:11587289:-	0	-
#Deleted in new
chr16	11587337	11587563	ENSG00000189067.12|LITAF|pc|chr16:11587337:11587563:-	0	-
#Deleted in new
chr16	11598387	11598500	ENSG00000189067.12|LITAF|pc|chr16:11598387:11598500:-	0	-
#Deleted in new
chr16	11629122	11629210	ENSG00000189067.12|LITAF|pc|chr16:11629122:11629210:-	0	-
#Deleted in new
chr16	11633532	11633637	ENSG00000189067.12|LITAF|pc|chr16:11633532:11633637:-	0	-
#Deleted in new
chr16	11635824	11635953	ENSG00000189067.12|LITAF|pc|chr16:11635824:11635953:-	0	-
#Deleted in new
chr16	11636069	11636377	ENSG00000189067.12|LITAF|pc|chr16:11636069:11636377:-	0	-
#Deleted in new
chr16	11636240	11636381	ENSG00000189067.12|LITAF|pc|chr16:11636240:11636381:-	0	-
#Deleted in new
chr16	11703669	11703750	ENSG00000153066.12|TXNDC11|pc|chr16:11703669:11703750:-	0	-
#Deleted in new
chr16	11721313	11721435	ENSG00000153066.12|TXNDC11|pc|chr16:11721313:11721435:-	0	-
#Deleted in new
chr16	11775526	11775632	ENSG00000122299.11|ZC3H7A|pc|chr16:11775526:11775632:-	0	-
#Deleted in new
chr16	11796218	11796415	ENSG00000122299.11|ZC3H7A|pc|chr16:11796218:11796415:-	0	-
#Deleted in new
chr16	11796218	11796527	ENSG00000122299.11|ZC3H7A|pc|chr16:11796218:11796527:-	0	-
#Deleted in new
chr16	11796833	11796952	ENSG00000122299.11|ZC3H7A|pc|chr16:11796833:11796952:-	0	-
#Deleted in new
chr16	11797123	11797229	ENSG00000122299.11|ZC3H7A|pc|chr16:11797123:11797229:-	0	-
#Deleted in new
chr16	11797123	11797232	ENSG00000122299.11|ZC3H7A|pc|chr16:11797123:11797232:-	0	-
#Deleted in new
chr16	11797123	11797246	ENSG00000122299.11|ZC3H7A|pc|chr16:11797123:11797246:-	0	-
#Deleted in new
chr16	11797123	11797267	ENSG00000122299.11|ZC3H7A|pc|chr16:11797123:11797267:-	0	-
#Deleted in new
chr16	11797467	11798275	ENSG00000277369.1|AC010654.1|lncRNA|chr16:11797467:11798275:+	0	+
#Deleted in new
chr16	11819828	11820297	ENSG00000262117.5|BCAR4|lncRNA|chr16:11819828:11820297:-	0	-
#Deleted in new
chr16	11819829	11820297	ENSG00000262117.5|BCAR4|lncRNA|chr16:11819829:11820297:-	0	-
#Deleted in new
chr16	11819841	11820297	ENSG00000262117.5|BCAR4|lncRNA|chr16:11819841:11820297:-	0	-
#Deleted in new
chr16	11819849	11820297	ENSG00000262117.5|BCAR4|lncRNA|chr16:11819849:11820297:-	0	-
#Deleted in new
chr16	11819919	11820285	ENSG00000262117.5|BCAR4|lncRNA|chr16:11819919:11820285:-	0	-
#Deleted in new
chr16	11819947	11820297	ENSG00000262117.5|BCAR4|lncRNA|chr16:11819947:11820297:-	0	-
#Deleted in new
chr16	11820150	11820297	ENSG00000262117.5|BCAR4|lncRNA|chr16:11820150:11820297:-	0	-
#Deleted in new
chr16	11821633	11821755	ENSG00000262117.5|BCAR4|lncRNA|chr16:11821633:11821755:-	0	-
#Deleted in new
chr16	11821637	11821755	ENSG00000262117.5|BCAR4|lncRNA|chr16:11821637:11821755:-	0	-
#Deleted in new
chr16	11824526	11824739	ENSG00000262117.5|BCAR4|lncRNA|chr16:11824526:11824739:-	0	-
#Partially deleted in new
chr16	11828698	11828811	ENSG00000262117.5|BCAR4|lncRNA|chr16:11828698:11828811:-	0	-
#Partially deleted in new
chr16	11828698	11828818	ENSG00000262117.5|BCAR4|lncRNA|chr16:11828698:11828818:-	0	-
#Partially deleted in new
chr16	11828698	11828828	ENSG00000262117.5|BCAR4|lncRNA|chr16:11828698:11828828:-	0	-
#Partially deleted in new
chr16	11828698	11828832	ENSG00000262117.5|BCAR4|lncRNA|chr16:11828698:11828832:-	0	-
#Partially deleted in new
chr16	11828698	11828845	ENSG00000262117.5|BCAR4|lncRNA|chr16:11828698:11828845:-	0	-
#Partially deleted in new
chr16	11833849	11838113	ENSG00000171490.12|RSL1D1|pc|chr16:11833849:11838113:-	0	-
#Deleted in new
chr16	11849257	11849385	ENSG00000171490.12|RSL1D1|pc|chr16:11849257:11849385:-	0	-
#Deleted in new
chr16	11851007	11851045	ENSG00000171490.12|RSL1D1|pc|chr16:11851007:11851045:-	0	-
#Partially deleted in new
chr16	11851101	11851232	ENSG00000171490.12|RSL1D1|pc|chr16:11851101:11851232:-	0	-
#Deleted in new
chr16	11880224	11880271	ENSG00000103342.12|GSPT1|pc|chr16:11880224:11880271:-	0	-
#Deleted in new
chr16	11881074	11882569	ENSG00000261560.1|AC007216.3|lncRNA|chr16:11881074:11882569:-	0	-
#Deleted in new
chr16	11895488	11895611	ENSG00000263307.1|AC007216.4|lncRNA|chr16:11895488:11895611:+	0	+
#Partially deleted in new
chr16	11908207	11908479	ENSG00000261216.1|AC007216.2|lncRNA|chr16:11908207:11908479:+	0	+
#Deleted in new
chr16	11908804	11908916	ENSG00000261216.1|AC007216.2|lncRNA|chr16:11908804:11908916:+	0	+
#Deleted in new
chr16	11927372	11927879	ENSG00000234719.8|NPIPB2|pc|chr16:11927372:11927879:-	0	-
#Deleted in new
chr16	11927594	11927879	ENSG00000234719.8|NPIPB2|pc|chr16:11927594:11927879:-	0	-
#Deleted in new
chr16	11928623	11929275	ENSG00000234719.8|NPIPB2|pc|chr16:11928623:11929275:-	0	-
#Deleted in new
chr16	11928980	11929275	ENSG00000234719.8|NPIPB2|pc|chr16:11928980:11929275:-	0	-
#Deleted in new
chr16	11929239	11929275	ENSG00000234719.8|NPIPB2|pc|chr16:11929239:11929275:-	0	-
#Deleted in new
chr16	11929239	11929343	ENSG00000234719.8|NPIPB2|pc|chr16:11929239:11929343:-	0	-
#Deleted in new
chr16	11929384	11929445	ENSG00000234719.8|NPIPB2|pc|chr16:11929384:11929445:-	0	-
#Deleted in new
chr16	11929384	11929637	ENSG00000234719.8|NPIPB2|pc|chr16:11929384:11929637:-	0	-
#Deleted in new
chr16	11930449	11930551	ENSG00000234719.8|NPIPB2|pc|chr16:11930449:11930551:-	0	-
#Deleted in new
chr16	11930512	11930551	ENSG00000234719.8|NPIPB2|pc|chr16:11930512:11930551:-	0	-
#Deleted in new
chr16	11933516	11933661	ENSG00000234719.8|NPIPB2|pc|chr16:11933516:11933661:-	0	-
#Deleted in new
chr16	11933516	11933712	ENSG00000234719.8|NPIPB2|pc|chr16:11933516:11933712:-	0	-
#Deleted in new
chr16	11933622	11933661	ENSG00000234719.8|NPIPB2|pc|chr16:11933622:11933661:-	0	-
#Deleted in new
chr16	11933824	11933924	ENSG00000234719.8|NPIPB2|pc|chr16:11933824:11933924:-	0	-
#Deleted in new
chr16	11937539	11937668	ENSG00000234719.8|NPIPB2|pc|chr16:11937539:11937668:-	0	-
#Deleted in new
chr16	11941168	11941297	ENSG00000234719.8|NPIPB2|pc|chr16:11941168:11941297:-	0	-
#Deleted in new
chr16	11941837	11942114	ENSG00000234719.8|NPIPB2|pc|chr16:11941837:11942114:-	0	-
#Deleted in new
chr16	11941982	11942045	ENSG00000234719.8|NPIPB2|pc|chr16:11941982:11942045:-	0	-
#Deleted in new
chr16	11956143	11956237	ENSG00000234719.8|NPIPB2|pc|chr16:11956143:11956237:-	0	-
#Deleted in new
chr16	11963890	11964026	ENSG00000234719.8|NPIPB2|pc|chr16:11963890:11964026:-	0	-
#Deleted in new
chr16	11967019	11967143	ENSG00000048462.10|TNFRSF17|pc|chr16:11967019:11967143:+	0	+
#Partially deleted in new
chr16	11976567	11976634	ENSG00000234719.8|NPIPB2|pc|chr16:11976567:11976634:-	0	-
#Deleted in new
chr16	12029612	12029734	ENSG00000048471.13|SNX29|pc|chr16:12029612:12029734:+	0	+
#Partially deleted in new
chr16	12051846	12053284	ENSG00000048471.13|SNX29|pc|chr16:12051846:12053284:+	0	+
#Deleted in new
chr16	12086745	12088185	ENSG00000175604.2|AC007601.1|lncRNA|chr16:12086745:12088185:-	0	-
#Deleted in new
chr16	12089768	12090302	ENSG00000175604.2|AC007601.1|lncRNA|chr16:12089768:12090302:-	0	-
#Deleted in new
chr16	12093626	12093891	ENSG00000261293.1|AC007601.2|lncRNA|chr16:12093626:12093891:-	0	-
#Deleted in new
chr16	12135550	12135737	ENSG00000048471.13|SNX29|pc|chr16:12135550:12135737:+	0	+
#Deleted in new
chr16	1227271	1227469	ENSG00000197253.13|TPSB2|pc|chr16:1227271:1227469:-	0	-
#Deleted in new
chr16	1227625	1227790	ENSG00000197253.13|TPSB2|pc|chr16:1227625:1227790:-	0	-
#Deleted in new
chr16	12372531	12372582	ENSG00000261394.1|AC007598.2|lncRNA|chr16:12372531:12372582:-	0	-
#Deleted in new
chr16	12374354	12376032	ENSG00000278979.1|AC007598.3|lncRNA|chr16:12374354:12376032:+	0	+
#Deleted in new
chr16	12442994	12443365	ENSG00000048471.13|SNX29|pc|chr16:12442994:12443365:+	0	+
#Deleted in new
chr16	124936	125073	ENSG00000103148.15|NPRL3|pc|chr16:124936:125073:-	0	-
#Deleted in new
chr16	12545481	12545601	ENSG00000260601.1|AC131391.1|lncRNA|chr16:12545481:12545601:+	0	+
#Partially deleted in new
chr16	12546284	12546684	ENSG00000260601.1|AC131391.1|lncRNA|chr16:12546284:12546684:+	0	+
#Deleted in new
chr16	12556352	12556539	ENSG00000259876.1|AC010333.1|lncRNA|chr16:12556352:12556539:-	0	-
#Deleted in new
chr16	12557318	12557694	ENSG00000259876.1|AC010333.1|lncRNA|chr16:12557318:12557694:-	0	-
#Deleted in new
chr16	12560755	12561146	ENSG00000259899.1|AC010333.2|lncRNA|chr16:12560755:12561146:-	0	-
#Partially deleted in new
chr16	12568505	12574289	ENSG00000048471.13|SNX29|pc|chr16:12568505:12574289:+	0	+
#Deleted in new
chr16	125736	126324	ENSG00000228779.1|Z69666.1|lncRNA|chr16:125736:126324:+	0	+
#Duplicated in new
chr16	1258331	1258998	ENSG00000095917.13|TPSD1|pc|chr16:1258331:1258998:+	0	+
#Deleted in new
chr16	12610737	12611044	ENSG00000259899.1|AC010333.2|lncRNA|chr16:12610737:12611044:-	0	-
#Deleted in new
chr16	12614450	12614852	ENSG00000274834.1|AC010333.3|lncRNA|chr16:12614450:12614852:+	0	+
#Deleted in new
chr16	127006	127219	ENSG00000228779.1|Z69666.1|lncRNA|chr16:127006:127219:+	0	+
#Deleted in new
chr16	12745872	12745978	ENSG00000260378.1|AC109597.1|lncRNA|chr16:12745872:12745978:+	0	+
#Deleted in new
chr16	12752990	12753066	ENSG00000260378.1|AC109597.1|lncRNA|chr16:12752990:12753066:+	0	+
#Deleted in new
chr16	12753220	12753387	ENSG00000260378.1|AC109597.1|lncRNA|chr16:12753220:12753387:+	0	+
#Deleted in new
chr16	12753825	12753915	ENSG00000260378.1|AC109597.1|lncRNA|chr16:12753825:12753915:+	0	+
#Deleted in new
chr16	12759281	12759415	ENSG00000261158.1|AC109597.2|lncRNA|chr16:12759281:12759415:+	0	+
#Deleted in new
chr16	1294550	1294650	ENSG00000260710.1|AC120498.4|lncRNA|chr16:1294550:1294650:-	0	-
#Deleted in new
chr16	1298842	1298991	ENSG00000260710.1|AC120498.4|lncRNA|chr16:1298842:1298991:-	0	-
#Deleted in new
chr16	1299095	1299166	ENSG00000260710.1|AC120498.4|lncRNA|chr16:1299095:1299166:-	0	-
#Deleted in new
chr16	1309802	1310253	ENSG00000103275.19|UBE2I|pc|chr16:1309802:1310253:+	0	+
#Deleted in new
chr16	1311870	1312667	ENSG00000103275.19|UBE2I|pc|chr16:1311870:1312667:+	0	+
#Deleted in new
chr16	1312184	1312603	ENSG00000103275.19|UBE2I|pc|chr16:1312184:1312603:+	0	+
#Deleted in new
chr16	1312346	1312558	ENSG00000103275.19|UBE2I|pc|chr16:1312346:1312558:+	0	+
#Deleted in new
chr16	1312346	1312603	ENSG00000103275.19|UBE2I|pc|chr16:1312346:1312603:+	0	+
#Deleted in new
chr16	1312346	1312667	ENSG00000103275.19|UBE2I|pc|chr16:1312346:1312667:+	0	+
#Partially deleted in new
chr16	1313559	1314096	ENSG00000103275.19|UBE2I|pc|chr16:1313559:1314096:+	0	+
#Partially deleted in new
chr16	1314292	1314934	ENSG00000103275.19|UBE2I|pc|chr16:1314292:1314934:+	0	+
#Partially deleted in new
chr16	1314548	1317190	ENSG00000103275.19|UBE2I|pc|chr16:1314548:1317190:+	0	+
#Partially deleted in new
chr16	1315324	1315669	ENSG00000103275.19|UBE2I|pc|chr16:1315324:1315669:+	0	+
#Partially deleted in new
chr16	1315653	1317125	ENSG00000103275.19|UBE2I|pc|chr16:1315653:1317125:+	0	+
#Deleted in new
chr16	1317026	1317125	ENSG00000103275.19|UBE2I|pc|chr16:1317026:1317125:+	0	+
#Partially deleted in new
chr16	1317890	1320458	ENSG00000261505.1|AL031714.1|lncRNA|chr16:1317890:1320458:-	0	-
#Partially deleted in new
chr16	1319254	1321911	ENSG00000261505.1|AL031714.1|lncRNA|chr16:1319254:1321911:-	0	-
#Deleted in new
chr16	1319701	1319862	ENSG00000103275.19|UBE2I|pc|chr16:1319701:1319862:+	0	+
#Partially deleted in new
chr16	1320437	1321776	ENSG00000103275.19|UBE2I|pc|chr16:1320437:1321776:+	0	+
#Deleted in new
chr16	1322377	1322827	ENSG00000261505.1|AL031714.1|lncRNA|chr16:1322377:1322827:-	0	-
#Deleted in new
chr16	1322487	1322845	ENSG00000261505.1|AL031714.1|lncRNA|chr16:1322487:1322845:-	0	-
#Deleted in new
chr16	13246315	13246390	ENSG00000262801.5|U91319.1|lncRNA|chr16:13246315:13246390:+	0	+
#Partially deleted in new
chr16	1334503	1334756	ENSG00000007516.13|BAIAP3|pc|chr16:1334503:1334756:+	0	+
#Deleted in new
chr16	13562706	13562912	ENSG00000262801.5|U91319.1|lncRNA|chr16:13562706:13562912:+	0	+
#Deleted in new
chr16	13562706	13562918	ENSG00000262801.5|U91319.1|lncRNA|chr16:13562706:13562918:+	0	+
#Deleted in new
chr16	1357699	1357832	ENSG00000090581.9|GNPTG|pc|chr16:1357699:1357832:+	0	+
#Deleted in new
chr16	1357699	1357844	ENSG00000090581.9|GNPTG|pc|chr16:1357699:1357844:+	0	+
#Deleted in new
chr16	1358200	1358417	ENSG00000090581.9|GNPTG|pc|chr16:1358200:1358417:+	0	+
#Deleted in new
chr16	1358899	1358975	ENSG00000260425.1|AL031709.1|lncRNA|chr16:1358899:1358975:-	0	-
#Partially deleted in new
chr16	1360622	1361955	ENSG00000090581.9|GNPTG|pc|chr16:1360622:1361955:+	0	+
#Deleted in new
chr16	1361046	1361405	ENSG00000260425.1|AL031709.1|lncRNA|chr16:1361046:1361405:-	0	-
#Deleted in new
chr16	13730136	13730436	ENSG00000262267.5|U95743.1|lncRNA|chr16:13730136:13730436:-	0	-
#Deleted in new
chr16	13730253	13730436	ENSG00000262267.5|U95743.1|lncRNA|chr16:13730253:13730436:-	0	-
#Deleted in new
chr16	13777719	13777844	ENSG00000262267.5|U95743.1|lncRNA|chr16:13777719:13777844:-	0	-
#Deleted in new
chr16	13778900	13779095	ENSG00000262267.5|U95743.1|lncRNA|chr16:13778900:13779095:-	0	-
#Deleted in new
chr16	13779697	13779748	ENSG00000262267.5|U95743.1|lncRNA|chr16:13779697:13779748:-	0	-
#Deleted in new
chr16	13779697	13779760	ENSG00000262267.5|U95743.1|lncRNA|chr16:13779697:13779760:-	0	-
#Deleted in new
chr16	1379532	1379645	ENSG00000059145.18|UNKL|pc|chr16:1379532:1379645:-	0	-
#Deleted in new
chr16	1379532	1379683	ENSG00000059145.18|UNKL|pc|chr16:1379532:1379683:-	0	-
#Deleted in new
chr16	1379593	1379680	ENSG00000059145.18|UNKL|pc|chr16:1379593:1379680:-	0	-
#Duplicated in new
chr16	138149	138512	ENSG00000103148.15|NPRL3|pc|chr16:138149:138512:-	0	-
#Duplicated in new
chr16	138149	138670	ENSG00000103148.15|NPRL3|pc|chr16:138149:138670:-	0	-
#Deleted in new
chr1	61385870	61385924	ENSG00000162599.15|NFIA|pc|chr1:61385870:61385924:+	0	+
#Deleted in new
chr16	138641	138666	ENSG00000103148.15|NPRL3|pc|chr16:138641:138666:-	0	-
#Deleted in new
chr16	138641	138677	ENSG00000103148.15|NPRL3|pc|chr16:138641:138677:-	0	-
#Deleted in new
chr16	138641	138860	ENSG00000103148.15|NPRL3|pc|chr16:138641:138860:-	0	-
#Deleted in new
chr16	13927449	13927655	ENSG00000175595.14|ERCC4|pc|chr16:13927449:13927655:+	0	+
#Partially deleted in new
chr16	13932156	13933247	ENSG00000175595.14|ERCC4|pc|chr16:13932156:13933247:+	0	+
#Deleted in new
chr16	13953154	13953422	ENSG00000263234.1|AC010401.3|lncRNA|chr16:13953154:13953422:+	0	+
#Partially deleted in new
chr16	13954511	13954825	ENSG00000263234.1|AC010401.3|lncRNA|chr16:13954511:13954825:+	0	+
#Deleted in new
chr16	1398304	1398941	ENSG00000059145.18|UNKL|pc|chr16:1398304:1398941:-	0	-
#Deleted in new
chr16	14009279	14009797	ENSG00000262097.1|LINC02185|lncRNA|chr16:14009279:14009797:-	0	-
#Deleted in new
chr16	14018879	14019465	ENSG00000261856.1|LINC02186|lncRNA|chr16:14018879:14019465:-	0	-
#Deleted in new
chr16	14020333	14020487	ENSG00000261856.1|LINC02186|lncRNA|chr16:14020333:14020487:-	0	-
#Deleted in new
chr16	14020932	14021077	ENSG00000261856.1|LINC02186|lncRNA|chr16:14020932:14021077:-	0	-
#Deleted in new
chr16	1407266	1407341	ENSG00000059145.18|UNKL|pc|chr16:1407266:1407341:-	0	-
#Deleted in new
chr16	1408833	1408892	ENSG00000260132.1|AL032819.1|lncRNA|chr16:1408833:1408892:+	0	+
#Deleted in new
chr16	14092720	14092882	ENSG00000186260.16|MKL2|pc|chr16:14092720:14092882:+	0	+
#Deleted in new
chr16	14092836	14092882	ENSG00000186260.16|MKL2|pc|chr16:14092836:14092882:+	0	+
#Partially deleted in new
chr16	14140543	14144785	ENSG00000186260.16|MKL2|pc|chr16:14140543:14144785:+	0	+
#Deleted in new
chr16	14170140	14170470	ENSG00000186260.16|MKL2|pc|chr16:14170140:14170470:+	0	+
#Deleted in new
chr16	14191819	14191904	ENSG00000262529.1|AC130650.1|lncRNA|chr16:14191819:14191904:-	0	-
#Deleted in new
chr16	14322470	14322543	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14322470:14322543:+	0	+
#Deleted in new
chr16	14322470	14322547	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14322470:14322547:+	0	+
#Deleted in new
chr16	14322475	14322543	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14322475:14322543:+	0	+
#Deleted in new
chr16	14322475	14322550	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14322475:14322550:+	0	+
#Deleted in new
chr16	14322507	14322554	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14322507:14322554:+	0	+
#Deleted in new
chr16	14322519	14322543	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14322519:14322543:+	0	+
#Deleted in new
chr16	14322519	14322547	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14322519:14322547:+	0	+
#Deleted in new
chr16	14322967	14323061	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14322967:14323061:+	0	+
#Deleted in new
chr16	14323224	14323383	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14323224:14323383:+	0	+
#Deleted in new
chr16	14323296	14323383	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14323296:14323383:+	0	+
#Partially deleted in new
chr16	14326012	14328939	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14326012:14328939:+	0	+
#Partially deleted in new
chr16	14326012	14331067	ENSG00000262454.3|MIR193BHG|lncRNA|chr16:14326012:14331067:+	0	+
#Deleted in new
chr16	14363108	14363295	ENSG00000260009.1|LINC02130|lncRNA|chr16:14363108:14363295:-	0	-
#Deleted in new
chr16	14408038	14408219	ENSG00000263257.1|AC040173.1|lncRNA|chr16:14408038:14408219:-	0	-
#Deleted in new
chr16	14410238	14410398	ENSG00000263257.1|AC040173.1|lncRNA|chr16:14410238:14410398:-	0	-
#Deleted in new
chr16	14501552	14501689	ENSG00000140694.16|PARN|pc|chr16:14501552:14501689:-	0	-
#Deleted in new
chr16	1452266	1452653	ENSG00000260051.1|AL031600.1|lncRNA|chr16:1452266:1452653:+	0	+
#Deleted in new
chr16	14565015	14565075	ENSG00000140694.16|PARN|pc|chr16:14565015:14565075:-	0	-
#Deleted in new
chr16	14576071	14576276	ENSG00000140694.16|PARN|pc|chr16:14576071:14576276:-	0	-
#Deleted in new
chr16	14578530	14578628	ENSG00000140694.16|PARN|pc|chr16:14578530:14578628:-	0	-
#Partially deleted in new
chr16	14591912	14592077	ENSG00000140694.16|PARN|pc|chr16:14591912:14592077:-	0	-
#Deleted in new
chr16	1466598	1466788	ENSG00000103249.17|CLCN7|pc|chr16:1466598:1466788:-	0	-
#Deleted in new
chr16	1467672	1467824	ENSG00000261430.1|AL031600.2|lncRNA|chr16:1467672:1467824:-	0	-
#Deleted in new
chr16	14678644	14678760	ENSG00000069764.9|PLA2G10|pc|chr16:14678644:14678760:-	0	-
#Deleted in new
chr16	14695566	14695965	ENSG00000261523.1|AC009167.1|lncRNA|chr16:14695566:14695965:-	0	-
#Deleted in new
chr16	14701773	14701855	ENSG00000261523.1|AC009167.1|lncRNA|chr16:14701773:14701855:-	0	-
#Deleted in new
chr16	14706957	14707055	ENSG00000261523.1|AC009167.1|lncRNA|chr16:14706957:14707055:-	0	-
#Deleted in new
chr16	14711688	14711751	ENSG00000224712.12|NPIPA3|pc|chr16:14711688:14711751:+	0	+
#Deleted in new
chr16	14716067	14716196	ENSG00000224712.12|NPIPA3|pc|chr16:14716067:14716196:+	0	+
#Deleted in new
chr16	14719826	14719926	ENSG00000224712.12|NPIPA3|pc|chr16:14719826:14719926:+	0	+
#Deleted in new
chr16	14720089	14720234	ENSG00000224712.12|NPIPA3|pc|chr16:14720089:14720234:+	0	+
#Deleted in new
chr16	14723191	14723299	ENSG00000224712.12|NPIPA3|pc|chr16:14723191:14723299:+	0	+
#Deleted in new
chr16	14724317	14724378	ENSG00000224712.12|NPIPA3|pc|chr16:14724317:14724378:+	0	+
#Deleted in new
chr16	14724487	14724523	ENSG00000224712.12|NPIPA3|pc|chr16:14724487:14724523:+	0	+
#Deleted in new
chr16	14724487	14724778	ENSG00000224712.12|NPIPA3|pc|chr16:14724487:14724778:+	0	+
#Deleted in new
chr16	1472529	1472684	ENSG00000261430.1|AL031600.2|lncRNA|chr16:1472529:1472684:-	0	-
#Deleted in new
chr16	14725882	14726293	ENSG00000224712.12|NPIPA3|pc|chr16:14725882:14726293:+	0	+
#Deleted in new
chr16	14725882	14726338	ENSG00000224712.12|NPIPA3|pc|chr16:14725882:14726338:+	0	+
#Deleted in new
chr16	14734684	14735083	ENSG00000261695.1|AC136443.4|lncRNA|chr16:14734684:14735083:-	0	-
#Deleted in new
chr16	14740891	14740973	ENSG00000261695.1|AC136443.4|lncRNA|chr16:14740891:14740973:-	0	-
#Deleted in new
chr16	14746079	14746177	ENSG00000261695.1|AC136443.4|lncRNA|chr16:14746079:14746177:-	0	-
#Deleted in new
chr16	14750812	14750875	ENSG00000254852.8|NPIPA2|pc|chr16:14750812:14750875:+	0	+
#Deleted in new
chr16	14755191	14755320	ENSG00000254852.8|NPIPA2|pc|chr16:14755191:14755320:+	0	+
#Deleted in new
chr16	14758946	14759046	ENSG00000254852.8|NPIPA2|pc|chr16:14758946:14759046:+	0	+
#Deleted in new
chr16	14759209	14759354	ENSG00000254852.8|NPIPA2|pc|chr16:14759209:14759354:+	0	+
#Deleted in new
chr16	14762311	14762419	ENSG00000254852.8|NPIPA2|pc|chr16:14762311:14762419:+	0	+
#Deleted in new
chr16	14763437	14763498	ENSG00000254852.8|NPIPA2|pc|chr16:14763437:14763498:+	0	+
#Deleted in new
chr16	14763607	14763643	ENSG00000254852.8|NPIPA2|pc|chr16:14763607:14763643:+	0	+
#Deleted in new
chr16	14763607	14763898	ENSG00000254852.8|NPIPA2|pc|chr16:14763607:14763898:+	0	+
#Deleted in new
chr16	14765002	14765413	ENSG00000254852.8|NPIPA2|pc|chr16:14765002:14765413:+	0	+
#Deleted in new
chr16	14848520	14848704	ENSG00000103512.14|NOMO1|pc|chr16:14848520:14848704:+	0	+
#Deleted in new
chr16	14901498	14902174	ENSG00000257264.5|AC136443.3|lncRNA|chr16:14901498:14902174:+	0	+
#Partially deleted in new
chr16	14909886	14911345	ENSG00000258354.1|AC138932.2|lncRNA|chr16:14909886:14911345:-	0	-
#Deleted in new
chr16	14937413	14937650	ENSG00000183426.16|NPIPA1|pc|chr16:14937413:14937650:+	0	+
#Deleted in new
chr16	14937442	14937505	ENSG00000183426.16|NPIPA1|pc|chr16:14937442:14937505:+	0	+
#Deleted in new
chr16	14937564	14937650	ENSG00000183426.16|NPIPA1|pc|chr16:14937564:14937650:+	0	+
#Deleted in new
chr16	14938214	14938358	ENSG00000183426.16|NPIPA1|pc|chr16:14938214:14938358:+	0	+
#Deleted in new
chr16	14941518	14941940	ENSG00000183426.16|NPIPA1|pc|chr16:14941518:14941940:+	0	+
#Deleted in new
chr16	14941811	14941940	ENSG00000183426.16|NPIPA1|pc|chr16:14941811:14941940:+	0	+
#Deleted in new
chr16	14941819	14941940	ENSG00000183426.16|NPIPA1|pc|chr16:14941819:14941940:+	0	+
#Deleted in new
chr16	14945573	14945673	ENSG00000183426.16|NPIPA1|pc|chr16:14945573:14945673:+	0	+
#Deleted in new
chr16	14945836	14945873	ENSG00000183426.16|NPIPA1|pc|chr16:14945836:14945873:+	0	+
#Deleted in new
chr16	14945836	14945923	ENSG00000183426.16|NPIPA1|pc|chr16:14945836:14945923:+	0	+
#Deleted in new
chr16	14945836	14945981	ENSG00000183426.16|NPIPA1|pc|chr16:14945836:14945981:+	0	+
#Deleted in new
chr16	14945884	14945981	ENSG00000183426.16|NPIPA1|pc|chr16:14945884:14945981:+	0	+
#Deleted in new
chr16	14948929	14949037	ENSG00000183426.16|NPIPA1|pc|chr16:14948929:14949037:+	0	+
#Deleted in new
chr16	14948929	14949936	ENSG00000183426.16|NPIPA1|pc|chr16:14948929:14949936:+	0	+
#Deleted in new
chr16	14950049	14950080	ENSG00000183426.16|NPIPA1|pc|chr16:14950049:14950080:+	0	+
#Deleted in new
chr16	14950049	14950110	ENSG00000183426.16|NPIPA1|pc|chr16:14950049:14950110:+	0	+
#Deleted in new
chr16	14950219	14950255	ENSG00000183426.16|NPIPA1|pc|chr16:14950219:14950255:+	0	+
#Deleted in new
chr16	14950219	14950521	ENSG00000183426.16|NPIPA1|pc|chr16:14950219:14950521:+	0	+
#Deleted in new
chr16	14950219	14950700	ENSG00000183426.16|NPIPA1|pc|chr16:14950219:14950700:+	0	+
#Deleted in new
chr16	14950751	14950821	ENSG00000183426.16|NPIPA1|pc|chr16:14950751:14950821:+	0	+
#Deleted in new
chr16	14951614	14951874	ENSG00000183426.16|NPIPA1|pc|chr16:14951614:14951874:+	0	+
#Deleted in new
chr16	14951614	14952056	ENSG00000183426.16|NPIPA1|pc|chr16:14951614:14952056:+	0	+
#Deleted in new
chr16	14951614	14952060	ENSG00000183426.16|NPIPA1|pc|chr16:14951614:14952060:+	0	+
#Split in new
chr16	15025223	15026706	ENSG00000179889.18|PDXDC1|pc|chr16:15025223:15026706:+	0	+
#Partially deleted in new
chr16	15044333	15046054	ENSG00000157045.8|NTAN1|pc|chr16:15044333:15046054:-	0	-
#Deleted in new
chr16	15094410	15094811	ENSG00000260735.1|AC139256.1|lncRNA|chr16:15094410:15094811:+	0	+
#Deleted in new
chr16	15104722	15104758	ENSG00000270580.5|PKD1P6-NPIPP1|lncRNA|chr16:15104722:15104758:-	0	-
#Deleted in new
chr16	15105548	15105818	ENSG00000270580.5|PKD1P6-NPIPP1|lncRNA|chr16:15105548:15105818:-	0	-
#Deleted in new
chr16	15106114	15106150	ENSG00000270580.5|PKD1P6-NPIPP1|lncRNA|chr16:15106114:15106150:-	0	-
#Deleted in new
chr16	15106259	15106320	ENSG00000270580.5|PKD1P6-NPIPP1|lncRNA|chr16:15106259:15106320:-	0	-
#Deleted in new
chr16	15106961	15107167	ENSG00000260735.1|AC139256.1|lncRNA|chr16:15106961:15107167:+	0	+
#Deleted in new
chr16	15107329	15107437	ENSG00000270580.5|PKD1P6-NPIPP1|lncRNA|chr16:15107329:15107437:-	0	-
#Deleted in new
chr16	15107427	15109197	ENSG00000260735.1|AC139256.1|lncRNA|chr16:15107427:15109197:+	0	+
#Deleted in new
chr16	15110413	15110558	ENSG00000270580.5|PKD1P6-NPIPP1|lncRNA|chr16:15110413:15110558:-	0	-
#Deleted in new
chr16	15110721	15110821	ENSG00000270580.5|PKD1P6-NPIPP1|lncRNA|chr16:15110721:15110821:-	0	-
#Deleted in new
chr16	15110790	15110821	ENSG00000270580.5|PKD1P6-NPIPP1|lncRNA|chr16:15110790:15110821:-	0	-
#Deleted in new
chr16	15114442	15114571	ENSG00000270580.5|PKD1P6-NPIPP1|lncRNA|chr16:15114442:15114571:-	0	-
#Deleted in new
chr16	15118925	15119054	ENSG00000270580.5|PKD1P6-NPIPP1|lncRNA|chr16:15118925:15119054:-	0	-
#Deleted in new
chr16	1512978	1513252	ENSG00000260646.1|AL031705.1|lncRNA|chr16:1512978:1513252:+	0	+
#Deleted in new
chr16	15138878	15139339	ENSG00000179889.18|PDXDC1|pc|chr16:15138878:15139339:+	0	+
#Deleted in new
chr16	1514267	1514675	ENSG00000260646.1|AL031705.1|lncRNA|chr16:1514267:1514675:+	0	+
#Partially deleted in new
chr16	15154902	15157020	ENSG00000257391.1|AC126763.1|lncRNA|chr16:15154902:15157020:+	0	+
#Deleted in new
chr16	15363623	15364069	ENSG00000183793.13|NPIPA5|pc|chr16:15363623:15364069:-	0	-
#Deleted in new
chr16	15364875	15364932	ENSG00000183793.13|NPIPA5|pc|chr16:15364875:15364932:-	0	-
#Deleted in new
chr16	15365173	15365464	ENSG00000183793.13|NPIPA5|pc|chr16:15365173:15365464:-	0	-
#Deleted in new
chr16	15365428	15365464	ENSG00000183793.13|NPIPA5|pc|chr16:15365428:15365464:-	0	-
#Deleted in new
chr16	15365573	15365634	ENSG00000183793.13|NPIPA5|pc|chr16:15365573:15365634:-	0	-
#Deleted in new
chr16	15366652	15366760	ENSG00000183793.13|NPIPA5|pc|chr16:15366652:15366760:-	0	-
#Deleted in new
chr16	15369711	15369856	ENSG00000183793.13|NPIPA5|pc|chr16:15369711:15369856:-	0	-
#Deleted in new
chr16	15370019	15370119	ENSG00000183793.13|NPIPA5|pc|chr16:15370019:15370119:-	0	-
#Deleted in new
chr16	15373714	15373843	ENSG00000183793.13|NPIPA5|pc|chr16:15373714:15373843:-	0	-
#Deleted in new
chr16	15378231	15378294	ENSG00000183793.13|NPIPA5|pc|chr16:15378231:15378294:-	0	-
#Deleted in new
chr16	15399430	15399548	ENSG00000156968.8|MPV17L|pc|chr16:15399430:15399548:+	0	+
#Deleted in new
chr16	15399430	15399548	ENSG00000261130.5|AC140504.1|pc|chr16:15399430:15399548:+	0	+
#Partially deleted in new
chr16	15407932	15413268	ENSG00000156968.8|MPV17L|pc|chr16:15407932:15413268:+	0	+
#Deleted in new
chr16	15447934	15448032	ENSG00000166780.10|C16orf45|pc|chr16:15447934:15448032:+	0	+
#Deleted in new
chr16	15532986	15533135	ENSG00000166780.10|C16orf45|pc|chr16:15532986:15533135:+	0	+
#Deleted in new
chr16	15533042	15533135	ENSG00000166780.10|C16orf45|pc|chr16:15533042:15533135:+	0	+
#Partially deleted in new
chr16	1553654	1554130	ENSG00000280231.1|AL031719.2|lncRNA|chr16:1553654:1554130:-	0	-
#Deleted in new
chr16	15536579	15536948	ENSG00000166780.10|C16orf45|pc|chr16:15536579:15536948:+	0	+
#Deleted in new
chr16	15577133	15577228	ENSG00000166780.10|C16orf45|pc|chr16:15577133:15577228:+	0	+
#Deleted in new
chr16	15584006	15584182	ENSG00000166780.10|C16orf45|pc|chr16:15584006:15584182:+	0	+
#Partially deleted in new
chr16	15591029	15591115	ENSG00000166780.10|C16orf45|pc|chr16:15591029:15591115:+	0	+
#Deleted in new
chr16	15610299	15610563	ENSG00000257769.1|AC026401.1|lncRNA|chr16:15610299:15610563:+	0	+
#Deleted in new
chr16	15649347	15649469	ENSG00000072864.14|NDE1|pc|chr16:15649347:15649469:+	0	+
#Deleted in new
chr16	15651468	15651584	ENSG00000072864.14|NDE1|pc|chr16:15651468:15651584:+	0	+
#Deleted in new
chr16	15651930	15652050	ENSG00000072864.14|NDE1|pc|chr16:15651930:15652050:+	0	+
#Deleted in new
chr16	15672662	15672771	ENSG00000072864.14|NDE1|pc|chr16:15672662:15672771:+	0	+
#Deleted in new
chr16	15672689	15672771	ENSG00000072864.14|NDE1|pc|chr16:15672689:15672771:+	0	+
#Deleted in new
chr16	15683289	15683388	ENSG00000262380.1|AC026401.2|lncRNA|chr16:15683289:15683388:+	0	+
#Deleted in new
chr16	15684166	15684570	ENSG00000262380.1|AC026401.2|lncRNA|chr16:15684166:15684570:+	0	+
#Deleted in new
chr16	15695907	15695990	ENSG00000072864.14|NDE1|pc|chr16:15695907:15695990:+	0	+
#Deleted in new
chr16	15711112	15711270	ENSG00000133392.17|MYH11|pc|chr16:15711112:15711270:-	0	-
#Partially deleted in new
chr16	1576715	1578371	ENSG00000280327.1|Z97633.1|lncRNA|chr16:1576715:1578371:-	0	-
#Deleted in new
chr16	15790974	15792717	ENSG00000280429.1|AF001548.3|lncRNA|chr16:15790974:15792717:-	0	-
#Deleted in new
chr16	1579241	1579519	ENSG00000260954.1|AL133297.1|lncRNA|chr16:1579241:1579519:-	0	-
#Deleted in new
chr16	1580526	1580585	ENSG00000260989.1|AL133297.2|lncRNA|chr16:1580526:1580585:+	0	+
#Deleted in new
chr16	15867068	15867516	ENSG00000133393.12|FOPNL|pc|chr16:15867068:15867516:-	0	-
#Deleted in new
chr16	15867178	15867516	ENSG00000133393.12|FOPNL|pc|chr16:15867178:15867516:-	0	-
#Deleted in new
chr16	15867219	15867516	ENSG00000133393.12|FOPNL|pc|chr16:15867219:15867516:-	0	-
#Deleted in new
chr16	15867306	15867516	ENSG00000133393.12|FOPNL|pc|chr16:15867306:15867516:-	0	-
#Deleted in new
chr16	15867337	15867516	ENSG00000133393.12|FOPNL|pc|chr16:15867337:15867516:-	0	-
#Deleted in new
chr16	15867419	15867516	ENSG00000133393.12|FOPNL|pc|chr16:15867419:15867516:-	0	-
#Deleted in new
chr16	15882948	15883020	ENSG00000133393.12|FOPNL|pc|chr16:15882948:15883020:-	0	-
#Deleted in new
chr16	15882948	15883048	ENSG00000133393.12|FOPNL|pc|chr16:15882948:15883048:-	0	-
#Deleted in new
chr16	15885028	15885074	ENSG00000262171.1|AC130651.2|lncRNA|chr16:15885028:15885074:+	0	+
#Deleted in new
chr16	1604414	1604482	ENSG00000260989.1|AL133297.2|lncRNA|chr16:1604414:1604482:+	0	+
#Deleted in new
chr16	16097991	16098281	ENSG00000103222.18|ABCC1|pc|chr16:16097991:16098281:+	0	+
#Deleted in new
chr16	16098872	16098902	ENSG00000103222.18|ABCC1|pc|chr16:16098872:16098902:+	0	+
#Deleted in new
chr16	16105399	16105460	ENSG00000103222.18|ABCC1|pc|chr16:16105399:16105460:+	0	+
#Split in new
chr16	16148927	16150241	ENSG00000091262.15|ABCC6|pc|chr16:16148927:16150241:-	0	-
#Duplicated in new
chr16	16149593	16150241	ENSG00000091262.15|ABCC6|pc|chr16:16149593:16150241:-	0	-
#Deleted in new
chr16	16181704	16181925	ENSG00000091262.15|ABCC6|pc|chr16:16181704:16181925:-	0	-
#Partially deleted in new
chr16	16220272	16220388	ENSG00000091262.15|ABCC6|pc|chr16:16220272:16220388:-	0	-
#Deleted in new
chr16	16223026	16223104	ENSG00000262332.1|AC136624.2|lncRNA|chr16:16223026:16223104:+	0	+
#Deleted in new
chr16	16235842	16236020	ENSG00000103226.17|NOMO3|pc|chr16:16235842:16236020:+	0	+
#Deleted in new
chr16	16247016	16247200	ENSG00000103226.17|NOMO3|pc|chr16:16247016:16247200:+	0	+
#Deleted in new
chr16	16288564	16288649	ENSG00000103226.17|NOMO3|pc|chr16:16288564:16288649:+	0	+
#Deleted in new
chr16	16290134	16290587	ENSG00000262848.1|AC136624.3|lncRNA|chr16:16290134:16290587:-	0	-
#Deleted in new
chr16	16292103	16292471	ENSG00000103226.17|NOMO3|pc|chr16:16292103:16292471:+	0	+
#Deleted in new
chr16	16292128	16292242	ENSG00000262848.1|AC136624.3|lncRNA|chr16:16292128:16292242:-	0	-
#Partially deleted in new
chr16	16293959	16294081	ENSG00000103226.17|NOMO3|pc|chr16:16293959:16294081:+	0	+
#Partially deleted in new
chr16	16308541	16310000	ENSG00000257366.1|AC138969.3|lncRNA|chr16:16308541:16310000:-	0	-
#Deleted in new
chr16	16335860	16335992	ENSG00000183889.12|AC138969.1|pc|chr16:16335860:16335992:+	0	+
#Deleted in new
chr16	16335860	16336137	ENSG00000183889.12|AC138969.1|pc|chr16:16335860:16336137:+	0	+
#Deleted in new
chr16	16335929	16335992	ENSG00000183889.12|AC138969.1|pc|chr16:16335929:16335992:+	0	+
#Deleted in new
chr16	16336024	16336137	ENSG00000183889.12|AC138969.1|pc|chr16:16336024:16336137:+	0	+
#Deleted in new
chr16	16336051	16336137	ENSG00000183889.12|AC138969.1|pc|chr16:16336051:16336137:+	0	+
#Deleted in new
chr16	16336676	16336842	ENSG00000183889.12|AC138969.1|pc|chr16:16336676:16336842:+	0	+
#Deleted in new
chr16	16337396	16337526	ENSG00000183889.12|AC138969.1|pc|chr16:16337396:16337526:+	0	+
#Deleted in new
chr16	16340305	16340434	ENSG00000183889.12|AC138969.1|pc|chr16:16340305:16340434:+	0	+
#Deleted in new
chr16	16340305	16340501	ENSG00000183889.12|AC138969.1|pc|chr16:16340305:16340501:+	0	+
#Deleted in new
chr16	16340327	16340434	ENSG00000183889.12|AC138969.1|pc|chr16:16340327:16340434:+	0	+
#Deleted in new
chr16	16340371	16340434	ENSG00000183889.12|AC138969.1|pc|chr16:16340371:16340434:+	0	+
#Deleted in new
chr16	16344044	16344105	ENSG00000183889.12|AC138969.1|pc|chr16:16344044:16344105:+	0	+
#Deleted in new
chr16	16344044	16344144	ENSG00000183889.12|AC138969.1|pc|chr16:16344044:16344144:+	0	+
#Deleted in new
chr16	16344307	16344452	ENSG00000183889.12|AC138969.1|pc|chr16:16344307:16344452:+	0	+
#Deleted in new
chr16	16344369	16344452	ENSG00000183889.12|AC138969.1|pc|chr16:16344369:16344452:+	0	+
#Deleted in new
chr16	16347402	16347455	ENSG00000183889.12|AC138969.1|pc|chr16:16347402:16347455:+	0	+
#Deleted in new
chr16	16347402	16347510	ENSG00000183889.12|AC138969.1|pc|chr16:16347402:16347510:+	0	+
#Deleted in new
chr16	16347402	16347633	ENSG00000183889.12|AC138969.1|pc|chr16:16347402:16347633:+	0	+
#Deleted in new
chr16	16348526	16348587	ENSG00000183889.12|AC138969.1|pc|chr16:16348526:16348587:+	0	+
#Deleted in new
chr16	16348696	16348732	ENSG00000183889.12|AC138969.1|pc|chr16:16348696:16348732:+	0	+
#Deleted in new
chr16	16348696	16349316	ENSG00000183889.12|AC138969.1|pc|chr16:16348696:16349316:+	0	+
#Deleted in new
chr16	16349228	16349285	ENSG00000183889.12|AC138969.1|pc|chr16:16349228:16349285:+	0	+
#Deleted in new
chr16	16349228	16349298	ENSG00000183889.12|AC138969.1|pc|chr16:16349228:16349298:+	0	+
#Deleted in new
chr16	16350091	16350203	ENSG00000183889.12|AC138969.1|pc|chr16:16350091:16350203:+	0	+
#Deleted in new
chr16	16350091	16350586	ENSG00000183889.12|AC138969.1|pc|chr16:16350091:16350586:+	0	+
#Deleted in new
chr16	16350091	16350590	ENSG00000183889.12|AC138969.1|pc|chr16:16350091:16350590:+	0	+
#Deleted in new
chr16	16350097	16350559	ENSG00000183889.12|AC138969.1|pc|chr16:16350097:16350559:+	0	+
#Deleted in new
chr16	16379054	16379307	ENSG00000214967.5|NPIPA7|pc|chr16:16379054:16379307:+	0	+
#Deleted in new
chr16	16383663	16383792	ENSG00000214967.5|NPIPA7|pc|chr16:16383663:16383792:+	0	+
#Deleted in new
chr16	16387398	16387498	ENSG00000214967.5|NPIPA7|pc|chr16:16387398:16387498:+	0	+
#Deleted in new
chr16	16387661	16387806	ENSG00000214967.5|NPIPA7|pc|chr16:16387661:16387806:+	0	+
#Deleted in new
chr16	16390766	16390874	ENSG00000214967.5|NPIPA7|pc|chr16:16390766:16390874:+	0	+
#Deleted in new
chr16	16390833	16390874	ENSG00000214967.5|NPIPA7|pc|chr16:16390833:16390874:+	0	+
#Deleted in new
chr16	16391890	16391951	ENSG00000214967.5|NPIPA7|pc|chr16:16391890:16391951:+	0	+
#Deleted in new
chr16	16392060	16392096	ENSG00000214967.5|NPIPA7|pc|chr16:16392060:16392096:+	0	+
#Deleted in new
chr16	16392592	16392662	ENSG00000214967.5|NPIPA7|pc|chr16:16392592:16392662:+	0	+
#Deleted in new
chr16	16393455	16393808	ENSG00000214967.5|NPIPA7|pc|chr16:16393455:16393808:+	0	+
#Deleted in new
chr16	16393455	16393954	ENSG00000214967.5|NPIPA7|pc|chr16:16393455:16393954:+	0	+
#Deleted in new
chr16	1645374	1645423	ENSG00000261732.1|AL031708.1|pc|chr16:1645374:1645423:+	0	+
#Deleted in new
chr16	1647042	1647055	ENSG00000261732.1|AL031708.1|pc|chr16:1647042:1647055:+	0	+
#Deleted in new
chr16	16658226	16658338	ENSG00000260126.1|AC092326.1|lncRNA|chr16:16658226:16658338:+	0	+
#Partially deleted in new
chr16	16659504	16659597	ENSG00000260126.1|AC092326.1|lncRNA|chr16:16659504:16659597:+	0	+
#Partially deleted in new
chr16	16663666	16664135	ENSG00000260126.1|AC092326.1|lncRNA|chr16:16663666:16664135:+	0	+
#Deleted in new
chr16	1683508	1683592	ENSG00000206053.12|JPT2|pc|chr16:1683508:1683592:+	0	+
#Deleted in new
chr16	1683508	1683620	ENSG00000206053.12|JPT2|pc|chr16:1683508:1683620:+	0	+
#Deleted in new
chr16	1685756	1686715	ENSG00000261732.1|AL031708.1|pc|chr16:1685756:1686715:+	0	+
#Deleted in new
chr1	61686791	61686895	ENSG00000162604.12|TM2D1|pc|chr1:61686791:61686895:-	0	-
#Deleted in new
chr1	61686791	61686921	ENSG00000162604.12|TM2D1|pc|chr1:61686791:61686921:-	0	-
#Partially deleted in new
chr16	1688354	1690536	ENSG00000278987.1|AL031009.1|lncRNA|chr16:1688354:1690536:+	0	+
#Deleted in new
chr16	1692397	1692442	ENSG00000206053.12|JPT2|pc|chr16:1692397:1692442:+	0	+
#Deleted in new
chr1	61696064	61696241	ENSG00000162604.12|TM2D1|pc|chr1:61696064:61696241:-	0	-
#Deleted in new
chr1	61697508	61700274	ENSG00000162604.12|TM2D1|pc|chr1:61697508:61700274:-	0	-
#Deleted in new
chr16	1702135	1702280	ENSG00000206053.12|JPT2|pc|chr16:1702135:1702280:+	0	+
#Partially deleted in new
chr16	1714001	1714208	ENSG00000261399.1|AL031710.1|lncRNA|chr16:1714001:1714208:-	0	-
#Deleted in new
chr1	61724287	61724425	ENSG00000162604.12|TM2D1|pc|chr1:61724287:61724425:-	0	-
#Deleted in new
chr16	17249673	17251395	ENSG00000279620.1|AC099494.3|lncRNA|chr16:17249673:17251395:-	0	-
#Duplicated in new
chr16	172846	173007	ENSG00000188536.12|HBA2|pc|chr16:172846:173007:+	0	+
#Deleted in new
chr16	17355227	17355415	ENSG00000103489.11|XYLT1|pc|chr16:17355227:17355415:-	0	-
#Deleted in new
chr16	17369593	17369725	ENSG00000103489.11|XYLT1|pc|chr16:17369593:17369725:-	0	-
#Deleted in new
chr16	17403445	17403501	ENSG00000103489.11|XYLT1|pc|chr16:17403445:17403501:-	0	-
#Deleted in new
chr1	61741997	61742424	ENSG00000271200.1|AC099791.2|lncRNA|chr1:61741997:61742424:-	0	-
#Deleted in new
chr1	61742476	61742555	ENSG00000132849.19|PATJ|pc|chr1:61742476:61742555:+	0	+
#Deleted in new
chr1	61742493	61742555	ENSG00000132849.19|PATJ|pc|chr1:61742493:61742555:+	0	+
#Deleted in new
chr1	61742544	61742555	ENSG00000132849.19|PATJ|pc|chr1:61742544:61742555:+	0	+
#Partially deleted in new
chr16	17445824	17446380	ENSG00000275927.1|AC009152.1|lncRNA|chr16:17445824:17446380:-	0	-
#Deleted in new
chr16	1751558	1752099	ENSG00000261207.1|AL031717.1|lncRNA|chr16:1751558:1752099:-	0	-
#Deleted in new
chr16	1752238	1752262	ENSG00000261207.1|AL031717.1|lncRNA|chr16:1752238:1752262:-	0	-
#Deleted in new
chr16	17540330	17540842	ENSG00000260945.1|AC109495.1|lncRNA|chr16:17540330:17540842:-	0	-
#Deleted in new
chr16	17540946	17540985	ENSG00000260945.1|AC109495.1|lncRNA|chr16:17540946:17540985:-	0	-
#Partially deleted in new
chr16	1778454	1781708	ENSG00000197774.12|EME2|pc|chr16:1778454:1781708:+	0	+
#Partially deleted in new
chr16	1783022	1783506	ENSG00000095906.16|NUBP2|pc|chr16:1783022:1783506:+	0	+
#Deleted in new
chr16	1783852	1784066	ENSG00000095906.16|NUBP2|pc|chr16:1783852:1784066:+	0	+
#Deleted in new
chr16	1783876	1784066	ENSG00000095906.16|NUBP2|pc|chr16:1783876:1784066:+	0	+
#Deleted in new
chr16	1784009	1784066	ENSG00000095906.16|NUBP2|pc|chr16:1784009:1784066:+	0	+
#Deleted in new
chr16	1784459	1784611	ENSG00000095906.16|NUBP2|pc|chr16:1784459:1784611:+	0	+
#Partially deleted in new
chr16	1784710	1786945	ENSG00000095906.16|NUBP2|pc|chr16:1784710:1786945:+	0	+
#Deleted in new
chr16	1784802	1786130	ENSG00000095906.16|NUBP2|pc|chr16:1784802:1786130:+	0	+
#Deleted in new
chr16	1785638	1785902	ENSG00000095906.16|NUBP2|pc|chr16:1785638:1785902:+	0	+
#Deleted in new
chr16	1795619	1795720	ENSG00000063854.12|HAGH|pc|chr16:1795619:1795720:-	0	-
#Deleted in new
chr16	17961596	17962370	ENSG00000280283.1|AC010601.2|lncRNA|chr16:17961596:17962370:+	0	+
#Partially deleted in new
chr16	17967392	17967688	ENSG00000259929.5|AC010601.1|lncRNA|chr16:17967392:17967688:-	0	-
#Deleted in new
chr16	18002805	18003448	ENSG00000260242.1|AC091489.1|lncRNA|chr16:18002805:18003448:-	0	-
#Deleted in new
chr16	1807576	1807948	ENSG00000063854.12|HAGH|pc|chr16:1807576:1807948:-	0	-
#Partially deleted in new
chr16	1807632	1809382	ENSG00000063854.12|HAGH|pc|chr16:1807632:1809382:-	0	-
#Partially deleted in new
chr16	1809753	1810887	ENSG00000063854.12|HAGH|pc|chr16:1809753:1810887:-	0	-
#Deleted in new
chr16	1812358	1812419	ENSG00000063854.12|HAGH|pc|chr16:1812358:1812419:-	0	-
#Deleted in new
chr16	18151451	18151595	ENSG00000259929.5|AC010601.1|lncRNA|chr16:18151451:18151595:-	0	-
#Partially deleted in new
chr16	1818514	1819223	ENSG00000063854.12|HAGH|pc|chr16:1818514:1819223:-	0	-
#Partially deleted in new
chr16	1821511	1822364	ENSG00000063854.12|HAGH|pc|chr16:1821511:1822364:-	0	-
#Deleted in new
chr16	18317941	18318435	ENSG00000214940.8|NPIPA8|pc|chr16:18317941:18318435:-	0	-
#Deleted in new
chr16	18317946	18318435	ENSG00000214940.8|NPIPA8|pc|chr16:18317946:18318435:-	0	-
#Deleted in new
chr16	18319257	18319298	ENSG00000214940.8|NPIPA8|pc|chr16:18319257:18319298:-	0	-
#Deleted in new
chr16	18319794	18319830	ENSG00000214940.8|NPIPA8|pc|chr16:18319794:18319830:-	0	-
#Deleted in new
chr16	18319939	18320000	ENSG00000214940.8|NPIPA8|pc|chr16:18319939:18320000:-	0	-
#Deleted in new
chr16	18321016	18321124	ENSG00000214940.8|NPIPA8|pc|chr16:18321016:18321124:-	0	-
#Deleted in new
chr16	18324090	18324235	ENSG00000214940.8|NPIPA8|pc|chr16:18324090:18324235:-	0	-
#Deleted in new
chr16	18324398	18324498	ENSG00000214940.8|NPIPA8|pc|chr16:18324398:18324498:-	0	-
#Deleted in new
chr16	18328113	18328242	ENSG00000214940.8|NPIPA8|pc|chr16:18328113:18328242:-	0	-
#Deleted in new
chr16	18332599	18332662	ENSG00000214940.8|NPIPA8|pc|chr16:18332599:18332662:-	0	-
#Deleted in new
chr16	18332599	18332731	ENSG00000214940.8|NPIPA8|pc|chr16:18332599:18332731:-	0	-
#Deleted in new
chr16	18358085	18358588	ENSG00000233024.7|AC126755.2|pc|chr16:18358085:18358588:-	0	-
#Deleted in new
chr16	18358094	18358588	ENSG00000233024.7|AC126755.2|pc|chr16:18358094:18358588:-	0	-
#Deleted in new
chr16	18358120	18358582	ENSG00000233024.7|AC126755.2|pc|chr16:18358120:18358582:-	0	-
#Deleted in new
chr16	18359381	18359451	ENSG00000233024.7|AC126755.2|pc|chr16:18359381:18359451:-	0	-
#Deleted in new
chr16	18359394	18359451	ENSG00000233024.7|AC126755.2|pc|chr16:18359394:18359451:-	0	-
#Deleted in new
chr16	18359833	18359983	ENSG00000233024.7|AC126755.2|pc|chr16:18359833:18359983:-	0	-
#Deleted in new
chr16	18359947	18359983	ENSG00000233024.7|AC126755.2|pc|chr16:18359947:18359983:-	0	-
#Deleted in new
chr16	18360092	18360153	ENSG00000233024.7|AC126755.2|pc|chr16:18360092:18360153:-	0	-
#Deleted in new
chr16	18361046	18361277	ENSG00000233024.7|AC126755.2|pc|chr16:18361046:18361277:-	0	-
#Deleted in new
chr16	18361169	18361277	ENSG00000233024.7|AC126755.2|pc|chr16:18361169:18361277:-	0	-
#Deleted in new
chr16	18361224	18361277	ENSG00000233024.7|AC126755.2|pc|chr16:18361224:18361277:-	0	-
#Deleted in new
chr16	18364226	18364371	ENSG00000233024.7|AC126755.2|pc|chr16:18364226:18364371:-	0	-
#Deleted in new
chr16	18364269	18364371	ENSG00000233024.7|AC126755.2|pc|chr16:18364269:18364371:-	0	-
#Deleted in new
chr16	18364534	18364634	ENSG00000233024.7|AC126755.2|pc|chr16:18364534:18364634:-	0	-
#Deleted in new
chr16	18368257	18368320	ENSG00000233024.7|AC126755.2|pc|chr16:18368257:18368320:-	0	-
#Deleted in new
chr16	18368257	18368364	ENSG00000233024.7|AC126755.2|pc|chr16:18368257:18368364:-	0	-
#Deleted in new
chr16	18368257	18368386	ENSG00000233024.7|AC126755.2|pc|chr16:18368257:18368386:-	0	-
#Deleted in new
chr16	18371167	18371297	ENSG00000233024.7|AC126755.2|pc|chr16:18371167:18371297:-	0	-
#Deleted in new
chr16	18371861	18372027	ENSG00000233024.7|AC126755.2|pc|chr16:18371861:18372027:-	0	-
#Deleted in new
chr16	18372577	18372690	ENSG00000233024.7|AC126755.2|pc|chr16:18372577:18372690:-	0	-
#Deleted in new
chr16	18372577	18372854	ENSG00000233024.7|AC126755.2|pc|chr16:18372577:18372854:-	0	-
#Deleted in new
chr16	18372722	18372785	ENSG00000233024.7|AC126755.2|pc|chr16:18372722:18372785:-	0	-
#Deleted in new
chr16	18372722	18372854	ENSG00000233024.7|AC126755.2|pc|chr16:18372722:18372854:-	0	-
#Partially deleted in new
chr16	1838015	1838126	ENSG00000180185.11|FAHD1|pc|chr16:1838015:1838126:+	0	+
#Partially deleted in new
chr16	1838015	1838134	ENSG00000180185.11|FAHD1|pc|chr16:1838015:1838134:+	0	+
#Partially deleted in new
chr16	1839261	1840207	ENSG00000180185.11|FAHD1|pc|chr16:1839261:1840207:+	0	+
#Partially deleted in new
chr16	18402145	18403604	ENSG00000257563.1|AC126755.4|lncRNA|chr16:18402145:18403604:+	0	+
#Deleted in new
chr16	1841019	1841130	ENSG00000260541.1|AL031722.1|lncRNA|chr16:1841019:1841130:-	0	-
#Deleted in new
chr16	18411308	18411851	ENSG00000257527.1|AC126755.3|lncRNA|chr16:18411308:18411851:-	0	-
#Deleted in new
chr16	1843438	1843547	ENSG00000260541.1|AL031722.1|lncRNA|chr16:1843438:1843547:-	0	-
#Deleted in new
chr16	18558676	18558854	ENSG00000185164.14|NOMO2|pc|chr16:18558676:18558854:-	0	-
#Deleted in new
chr16	18571605	18571683	ENSG00000260550.2|AC136618.1|lncRNA|chr16:18571605:18571683:-	0	-
#Duplicated in new
chr16	185747	186294	ENSG00000268836.1|Z69706.1|lncRNA|chr16:185747:186294:-	0	-
#Partially deleted in new
chr16	18781294	18783102	ENSG00000134419.15|RPS15A|pc|chr16:18781294:18783102:-	0	-
#Deleted in new
chr16	18781990	18782219	ENSG00000134419.15|RPS15A|pc|chr16:18781990:18782219:-	0	-
#Partially deleted in new
chr16	18782967	18786795	ENSG00000134419.15|RPS15A|pc|chr16:18782967:18786795:-	0	-
#Deleted in new
chr16	18783640	18783714	ENSG00000134419.15|RPS15A|pc|chr16:18783640:18783714:-	0	-
#Partially deleted in new
chr16	18784020	18784823	ENSG00000134419.15|RPS15A|pc|chr16:18784020:18784823:-	0	-
#Deleted in new
chr16	18786239	18786336	ENSG00000134419.15|RPS15A|pc|chr16:18786239:18786336:-	0	-
#Partially deleted in new
chr16	18788543	18789118	ENSG00000134419.15|RPS15A|pc|chr16:18788543:18789118:-	0	-
#Deleted in new
chr16	18803082	18803218	ENSG00000260017.1|AC138811.1|lncRNA|chr16:18803082:18803218:+	0	+
#Deleted in new
chr16	1883195	1883296	ENSG00000162039.14|MEIOB|pc|chr16:1883195:1883296:-	0	-
#Deleted in new
chr16	1883195	1883296	ENSG00000281219.2|LINC00254|lncRNA|chr16:1883195:1883296:-	0	-
#Partially deleted in new
chr16	18875101	18876393	ENSG00000157106.16|SMG1|pc|chr16:18875101:18876393:-	0	-
#Partially deleted in new
chr16	18877130	18879661	ENSG00000157106.16|SMG1|pc|chr16:18877130:18879661:-	0	-
#Deleted in new
chr16	1890132	1890434	ENSG00000259947.1|LINC02124|lncRNA|chr16:1890132:1890434:+	0	+
#Partially deleted in new
chr16	18911362	18911713	ENSG00000157106.16|SMG1|pc|chr16:18911362:18911713:-	0	-
#Partially deleted in new
chr16	18926862	18927137	ENSG00000260352.1|AC092287.1|lncRNA|chr16:18926862:18927137:+	0	+
#Deleted in new
chr16	18936855	18937043	ENSG00000260352.1|AC092287.1|lncRNA|chr16:18936855:18937043:+	0	+
#Deleted in new
chr16	19033515	19033817	ENSG00000170537.12|TMC7|pc|chr16:19033515:19033817:+	0	+
#Partially deleted in new
chr16	19059415	19059996	ENSG00000170537.12|TMC7|pc|chr16:19059415:19059996:+	0	+
#Deleted in new
chr16	19062498	19062598	ENSG00000261465.6|AC099518.4|lncRNA|chr16:19062498:19062598:-	0	-
#Deleted in new
chr16	190661	190802	ENSG00000007392.16|LUC7L|pc|chr16:190661:190802:-	0	-
#Deleted in new
chr16	19086855	19087000	ENSG00000260430.1|AC099518.1|lncRNA|chr16:19086855:19087000:+	0	+
#Deleted in new
chr16	19093220	19093477	ENSG00000260430.1|AC099518.1|lncRNA|chr16:19093220:19093477:+	0	+
#Deleted in new
chr16	19097671	19098110	ENSG00000260430.1|AC099518.1|lncRNA|chr16:19097671:19098110:+	0	+
#Deleted in new
chr16	19120106	19120224	ENSG00000261427.6|AC099518.3|pc|chr16:19120106:19120224:+	0	+
#Deleted in new
chr16	19153087	19153186	ENSG00000261427.6|AC099518.3|pc|chr16:19153087:19153186:+	0	+
#Deleted in new
chr1	61918023	61918076	ENSG00000132849.19|PATJ|pc|chr1:61918023:61918076:+	0	+
#Deleted in new
chr16	19249940	19249970	ENSG00000103528.16|SYT17|pc|chr16:19249940:19249970:+	0	+
#Deleted in new
chr16	19249940	19250078	ENSG00000103528.16|SYT17|pc|chr16:19249940:19250078:+	0	+
#Deleted in new
chr16	19298650	19298838	ENSG00000261210.7|CLEC19A|pc|chr16:19298650:19298838:+	0	+
#Deleted in new
chr16	19298672	19298838	ENSG00000261210.7|CLEC19A|pc|chr16:19298672:19298838:+	0	+
#Deleted in new
chr16	19304880	19305184	ENSG00000261210.7|CLEC19A|pc|chr16:19304880:19305184:+	0	+
#Partially deleted in new
chr16	19309003	19310947	ENSG00000261210.7|CLEC19A|pc|chr16:19309003:19310947:+	0	+
#Deleted in new
chr16	19315163	19316526	ENSG00000259871.1|AC130456.1|lncRNA|chr16:19315163:19316526:+	0	+
#Deleted in new
chr16	19321955	19322145	ENSG00000261210.7|CLEC19A|pc|chr16:19321955:19322145:+	0	+
#Deleted in new
chr16	19367810	19367877	ENSG00000259925.1|AC130456.2|lncRNA|chr16:19367810:19367877:-	0	-
#Deleted in new
chr16	19367810	19367878	ENSG00000259925.1|AC130456.2|lncRNA|chr16:19367810:19367878:-	0	-
#Deleted in new
chr16	19392212	19393468	ENSG00000280265.1|AC130456.7|lncRNA|chr16:19392212:19393468:-	0	-
#Deleted in new
chr16	19393375	19393547	ENSG00000259925.1|AC130456.2|lncRNA|chr16:19393375:19393547:-	0	-
#Deleted in new
chr16	19395982	19396249	ENSG00000259925.1|AC130456.2|lncRNA|chr16:19395982:19396249:-	0	-
#Deleted in new
chr16	19401439	19401693	ENSG00000259925.1|AC130456.2|lncRNA|chr16:19401439:19401693:-	0	-
#Deleted in new
chr16	19410495	19410540	ENSG00000103534.16|TMC5|pc|chr16:19410495:19410540:+	0	+
#Deleted in new
chr16	19410538	19410773	ENSG00000103534.16|TMC5|pc|chr16:19410538:19410773:+	0	+
#Deleted in new
chr16	19410722	19411176	ENSG00000103534.16|TMC5|pc|chr16:19410722:19411176:+	0	+
#Deleted in new
chr16	19410728	19411298	ENSG00000260681.1|AC130456.4|lncRNA|chr16:19410728:19411298:-	0	-
#Deleted in new
chr16	19410734	19411176	ENSG00000103534.16|TMC5|pc|chr16:19410734:19411176:+	0	+
#Deleted in new
chr16	19411567	19411662	ENSG00000260681.1|AC130456.4|lncRNA|chr16:19411567:19411662:-	0	-
#Deleted in new
chr16	19417695	19418092	ENSG00000103534.16|TMC5|pc|chr16:19417695:19418092:+	0	+
#Deleted in new
chr16	19430412	19430640	ENSG00000103534.16|TMC5|pc|chr16:19430412:19430640:+	0	+
#Partially deleted in new
chr16	1943973	1944893	ENSG00000140986.7|RPL3L|pc|chr16:1943973:1944893:-	0	-
#Deleted in new
chr16	19462502	19462565	ENSG00000103534.16|TMC5|pc|chr16:19462502:19462565:+	0	+
#Deleted in new
chr16	19474757	19474874	ENSG00000103534.16|TMC5|pc|chr16:19474757:19474874:+	0	+
#Deleted in new
chr16	19476915	19477080	ENSG00000260592.1|AC130456.3|lncRNA|chr16:19476915:19477080:-	0	-
#Deleted in new
chr16	19501688	19501889	ENSG00000260934.1|AC130456.5|lncRNA|chr16:19501688:19501889:+	0	+
#Deleted in new
chr16	19501977	19502286	ENSG00000260934.1|AC130456.5|lncRNA|chr16:19501977:19502286:+	0	+
#Deleted in new
chr16	19503860	19504625	ENSG00000279747.1|AC130456.6|lncRNA|chr16:19503860:19504625:+	0	+
#Deleted in new
chr16	1957313	1957606	ENSG00000140986.7|RPL3L|pc|chr16:1957313:1957606:-	0	-
#Deleted in new
chr16	1957393	1957597	ENSG00000140986.7|RPL3L|pc|chr16:1957393:1957597:-	0	-
#Deleted in new
chr16	19578303	19578358	ENSG00000103544.14|C16orf62|pc|chr16:19578303:19578358:+	0	+
#Partially deleted in new
chr16	19579398	19579842	ENSG00000103544.14|C16orf62|pc|chr16:19579398:19579842:+	0	+
#Deleted in new
chr16	1963652	1963839	ENSG00000140988.15|RPS2|pc|chr16:1963652:1963839:-	0	-
#Partially deleted in new
chr16	1963652	1964365	ENSG00000140988.15|RPS2|pc|chr16:1963652:1964365:-	0	-
#Deleted in new
chr16	19652354	19652691	ENSG00000103544.14|C16orf62|pc|chr16:19652354:19652691:+	0	+
#Deleted in new
chr16	19694034	19694428	ENSG00000276571.1|AC002550.2|lncRNA|chr16:19694034:19694428:-	0	-
#Partially deleted in new
chr16	19701933	19707221	ENSG00000103550.13|KNOP1|pc|chr16:19701933:19707221:-	0	-
#Deleted in new
chr16	19716455	19716542	ENSG00000174628.16|IQCK|pc|chr16:19716455:19716542:+	0	+
#Deleted in new
chr16	1971654	1971896	ENSG00000277602.1|AC005363.2|lncRNA|chr16:1971654:1971896:-	0	-
#Deleted in new
chr16	1982659	1982751	ENSG00000196408.11|NOXO1|pc|chr16:1982659:1982751:-	0	-
#Deleted in new
chr16	19885925	19886155	ENSG00000167191.11|GPRC5B|pc|chr16:19885925:19886155:-	0	-
#Deleted in new
chr16	19885925	19886167	ENSG00000167191.11|GPRC5B|pc|chr16:19885925:19886167:-	0	-
#Deleted in new
chr1	6200488	6200727	ENSG00000116251.9|RPL22|pc|chr1:6200488:6200727:-	0	-
#Deleted in new
chr1	6200488	6200750	ENSG00000116251.9|RPL22|pc|chr1:6200488:6200750:-	0	-
#Deleted in new
chr1	6200488	6200842	ENSG00000116251.9|RPL22|pc|chr1:6200488:6200842:-	0	-
#Deleted in new
chr16	2009925	2010102	ENSG00000183971.6|NPW|pc|chr16:2009925:2010102:+	0	+
#Deleted in new
chr1	6203366	6203494	ENSG00000116251.9|RPL22|pc|chr1:6203366:6203494:-	0	-
#Deleted in new
chr16	20342413	20342509	ENSG00000169344.15|UMOD|pc|chr16:20342413:20342509:-	0	-
#Deleted in new
chr16	20349707	20349869	ENSG00000169344.15|UMOD|pc|chr16:20349707:20349869:-	0	-
#Deleted in new
chr16	20349770	20349869	ENSG00000169344.15|UMOD|pc|chr16:20349770:20349869:-	0	-
#Deleted in new
chr16	20349800	20349869	ENSG00000169344.15|UMOD|pc|chr16:20349800:20349869:-	0	-
#Deleted in new
chr1	62038473	62038485	ENSG00000132849.19|PATJ|pc|chr1:62038473:62038485:+	0	+
#Deleted in new
chr1	62038489	62038530	ENSG00000132849.19|PATJ|pc|chr1:62038489:62038530:+	0	+
#Deleted in new
chr16	20388786	20388909	ENSG00000169340.9|PDILT|pc|chr16:20388786:20388909:-	0	-
#Deleted in new
chr16	20390607	20391164	ENSG00000263237.1|AC106796.1|lncRNA|chr16:20390607:20391164:+	0	+
#Partially deleted in new
chr16	20441249	20441586	ENSG00000262995.1|AC137056.1|lncRNA|chr16:20441249:20441586:-	0	-
#Deleted in new
chr16	20441493	20441518	ENSG00000262995.1|AC137056.1|lncRNA|chr16:20441493:20441518:-	0	-
#Deleted in new
chr16	20442225	20442388	ENSG00000262995.1|AC137056.1|lncRNA|chr16:20442225:20442388:-	0	-
#Deleted in new
chr16	20445992	20446111	ENSG00000262995.1|AC137056.1|lncRNA|chr16:20445992:20446111:-	0	-
#Deleted in new
chr16	20446866	20447000	ENSG00000262995.1|AC137056.1|lncRNA|chr16:20446866:20447000:-	0	-
#Partially deleted in new
chr16	20452084	20452466	ENSG00000183747.11|ACSM2A|pc|chr16:20452084:20452466:+	0	+
#Deleted in new
chr16	20452338	20452466	ENSG00000183747.11|ACSM2A|pc|chr16:20452338:20452466:+	0	+
#Deleted in new
chr16	20452380	20452466	ENSG00000183747.11|ACSM2A|pc|chr16:20452380:20452466:+	0	+
#Deleted in new
chr16	20452387	20452466	ENSG00000183747.11|ACSM2A|pc|chr16:20452387:20452466:+	0	+
#Deleted in new
chr16	20452431	20452466	ENSG00000183747.11|ACSM2A|pc|chr16:20452431:20452466:+	0	+
#Deleted in new
chr16	20453242	20453885	ENSG00000183747.11|ACSM2A|pc|chr16:20453242:20453885:+	0	+
#Deleted in new
chr16	20473957	20474223	ENSG00000183747.11|ACSM2A|pc|chr16:20473957:20474223:+	0	+
#Partially deleted in new
chr16	20480821	20482134	ENSG00000183747.11|ACSM2A|pc|chr16:20480821:20482134:+	0	+
#Deleted in new
chr1	6204839	6204982	ENSG00000226944.1|AL031847.1|lncRNA|chr1:6204839:6204982:-	0	-
#Partially deleted in new
chr16	20487701	20489659	ENSG00000280306.1|AC137056.2|lncRNA|chr16:20487701:20489659:+	0	+
#Partially deleted in new
chr16	20541700	20543013	ENSG00000066813.14|ACSM2B|pc|chr16:20541700:20543013:-	0	-
#Partially deleted in new
chr1	6205474	6206101	ENSG00000158286.12|RNF207|pc|chr1:6205474:6206101:+	0	+
#Deleted in new
chr16	20549610	20549878	ENSG00000066813.14|ACSM2B|pc|chr16:20549610:20549878:-	0	-
#Partially deleted in new
chr16	2055401	2055892	ENSG00000103197.16|TSC2|pc|chr16:2055401:2055892:+	0	+
#Deleted in new
chr16	20574124	20574645	ENSG00000066813.14|ACSM2B|pc|chr16:20574124:20574645:-	0	-
#Deleted in new
chr16	20574308	20574645	ENSG00000066813.14|ACSM2B|pc|chr16:20574308:20574645:-	0	-
#Deleted in new
chr1	6205753	6205780	ENSG00000226944.1|AL031847.1|lncRNA|chr1:6205753:6205780:-	0	-
#Deleted in new
chr16	20575421	20575456	ENSG00000066813.14|ACSM2B|pc|chr16:20575421:20575456:-	0	-
#Deleted in new
chr16	20575421	20575500	ENSG00000066813.14|ACSM2B|pc|chr16:20575421:20575500:-	0	-
#Deleted in new
chr16	20575421	20575507	ENSG00000066813.14|ACSM2B|pc|chr16:20575421:20575507:-	0	-
#Deleted in new
chr16	20575421	20575549	ENSG00000066813.14|ACSM2B|pc|chr16:20575421:20575549:-	0	-
#Deleted in new
chr16	20575421	20575803	ENSG00000066813.14|ACSM2B|pc|chr16:20575421:20575803:-	0	-
#Deleted in new
chr16	20576206	20576277	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576277:-	0	-
#Deleted in new
chr16	20576206	20576281	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576281:-	0	-
#Deleted in new
chr16	20576206	20576284	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576284:-	0	-
#Deleted in new
chr16	20576206	20576286	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576286:-	0	-
#Deleted in new
chr16	20576206	20576304	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576304:-	0	-
#Deleted in new
chr16	20576206	20576312	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576312:-	0	-
#Deleted in new
chr16	20576206	20576316	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576316:-	0	-
#Deleted in new
chr16	20576206	20576340	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576340:-	0	-
#Deleted in new
chr16	20576206	20576351	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576351:-	0	-
#Deleted in new
chr16	20576206	20576367	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576367:-	0	-
#Deleted in new
chr16	20576206	20576373	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576373:-	0	-
#Deleted in new
chr16	20576206	20576427	ENSG00000066813.14|ACSM2B|pc|chr16:20576206:20576427:-	0	-
#Deleted in new
chr16	20580998	20581021	ENSG00000260201.2|AC141273.1|lncRNA|chr16:20580998:20581021:+	0	+
#Deleted in new
chr16	20581778	20581895	ENSG00000260201.2|AC141273.1|lncRNA|chr16:20581778:20581895:+	0	+
#Deleted in new
chr16	20581802	20581895	ENSG00000260201.2|AC141273.1|lncRNA|chr16:20581802:20581895:+	0	+
#Deleted in new
chr16	20585499	20585662	ENSG00000260201.2|AC141273.1|lncRNA|chr16:20585499:20585662:+	0	+
#Deleted in new
chr16	20586301	20586495	ENSG00000260201.2|AC141273.1|lncRNA|chr16:20586301:20586495:+	0	+
#Deleted in new
chr16	20586301	20586640	ENSG00000260201.2|AC141273.1|lncRNA|chr16:20586301:20586640:+	0	+
#Partially deleted in new
chr1	6206195	6206302	ENSG00000158286.12|RNF207|pc|chr1:6206195:6206302:+	0	+
#Deleted in new
chr16	2066228	2066450	ENSG00000103197.16|TSC2|pc|chr16:2066228:2066450:+	0	+
#Deleted in new
chr16	20674509	20674822	ENSG00000005187.11|ACSM3|pc|chr16:20674509:20674822:+	0	+
#Deleted in new
chr16	20674530	20674822	ENSG00000005187.11|ACSM3|pc|chr16:20674530:20674822:+	0	+
#Deleted in new
chr16	20674607	20674822	ENSG00000005187.11|ACSM3|pc|chr16:20674607:20674822:+	0	+
#Deleted in new
chr16	20676124	20676161	ENSG00000166743.9|ACSM1|pc|chr16:20676124:20676161:-	0	-
#Deleted in new
chr16	20679157	20679449	ENSG00000005187.11|ACSM3|pc|chr16:20679157:20679449:+	0	+
#Deleted in new
chr16	20679157	20682176	ENSG00000005187.11|ACSM3|pc|chr16:20679157:20682176:+	0	+
#Deleted in new
chr16	2068557	2068776	ENSG00000103197.16|TSC2|pc|chr16:2068557:2068776:+	0	+
#Deleted in new
chr16	20702815	20703909	ENSG00000066654.13|THUMPD1|pc|chr16:20702815:20703909:-	0	-
#Deleted in new
chr16	20743662	20743850	ENSG00000260510.1|AC004381.1|lncRNA|chr16:20743662:20743850:-	0	-
#Deleted in new
chr16	20749264	20749368	ENSG00000005187.11|ACSM3|pc|chr16:20749264:20749368:+	0	+
#Deleted in new
chr16	20749417	20750003	ENSG00000005187.11|ACSM3|pc|chr16:20749417:20750003:+	0	+
#Deleted in new
chr16	20749909	20750003	ENSG00000005187.11|ACSM3|pc|chr16:20749909:20750003:+	0	+
#Deleted in new
chr16	20755572	20755608	ENSG00000005187.11|ACSM3|pc|chr16:20755572:20755608:+	0	+
#Deleted in new
chr16	20755572	20755616	ENSG00000005187.11|ACSM3|pc|chr16:20755572:20755616:+	0	+
#Partially deleted in new
chr16	2076157	2076257	ENSG00000103197.16|TSC2|pc|chr16:2076157:2076257:+	0	+
#Deleted in new
chr16	20764682	20764736	ENSG00000005187.11|ACSM3|pc|chr16:20764682:20764736:+	0	+
#Deleted in new
chr16	20766600	20766620	ENSG00000260510.1|AC004381.1|lncRNA|chr16:20766600:20766620:-	0	-
#Deleted in new
chr16	20779796	20779907	ENSG00000005187.11|ACSM3|pc|chr16:20779796:20779907:+	0	+
#Deleted in new
chr16	20779880	20779907	ENSG00000005187.11|ACSM3|pc|chr16:20779880:20779907:+	0	+
#Deleted in new
chr16	20783250	20783331	ENSG00000005187.11|ACSM3|pc|chr16:20783250:20783331:+	0	+
#Deleted in new
chr16	20783263	20783591	ENSG00000005187.11|ACSM3|pc|chr16:20783263:20783591:+	0	+
#Deleted in new
chr16	20789478	20789557	ENSG00000196678.13|ERI2|pc|chr16:20789478:20789557:-	0	-
#Deleted in new
chr16	20805714	20805945	ENSG00000196678.13|ERI2|pc|chr16:20805714:20805945:-	0	-
#Deleted in new
chr16	20805714	20806105	ENSG00000196678.13|ERI2|pc|chr16:20805714:20806105:-	0	-
#Deleted in new
chr16	20805714	20806119	ENSG00000196678.13|ERI2|pc|chr16:20805714:20806119:-	0	-
#Deleted in new
chr16	20805786	20805969	ENSG00000196678.13|ERI2|pc|chr16:20805786:20805969:-	0	-
#Partially deleted in new
chr16	20806009	20806450	ENSG00000196678.13|ERI2|pc|chr16:20806009:20806450:-	0	-
#Partially deleted in new
chr16	20806046	20806450	ENSG00000196678.13|ERI2|pc|chr16:20806046:20806450:-	0	-
#Partially deleted in new
chr16	20807156	20807363	ENSG00000005189.19|REXO5|pc|chr16:20807156:20807363:+	0	+
#Deleted in new
chr16	20808787	20808880	ENSG00000005189.19|REXO5|pc|chr16:20808787:20808880:+	0	+
#Deleted in new
chr16	208600	208664	ENSG00000007392.16|LUC7L|pc|chr16:208600:208664:-	0	-
#Deleted in new
chr16	208600	209773	ENSG00000007392.16|LUC7L|pc|chr16:208600:209773:-	0	-
#Deleted in new
chr16	208632	208664	ENSG00000007392.16|LUC7L|pc|chr16:208632:208664:-	0	-
#Deleted in new
chr1	6208680	6208739	ENSG00000116251.9|RPL22|pc|chr1:6208680:6208739:-	0	-
#Deleted in new
chr16	20921301	20921463	ENSG00000102897.9|LYRM1|pc|chr16:20921301:20921463:+	0	+
#Deleted in new
chr16	20921301	20922007	ENSG00000102897.9|LYRM1|pc|chr16:20921301:20922007:+	0	+
#Deleted in new
chr16	2094720	2094941	ENSG00000259933.6|AC009065.2|lncRNA|chr16:2094720:2094941:+	0	+
#Deleted in new
chr16	2094720	2095017	ENSG00000259933.6|AC009065.2|lncRNA|chr16:2094720:2095017:+	0	+
#Deleted in new
chr16	2094829	2095214	ENSG00000261123.1|AC009065.5|lncRNA|chr16:2094829:2095214:-	0	-
#Deleted in new
chr16	2095342	2095433	ENSG00000259933.6|AC009065.2|lncRNA|chr16:2095342:2095433:+	0	+
#Deleted in new
chr1	62100318	62100408	ENSG00000132849.19|PATJ|pc|chr1:62100318:62100408:+	0	+
#Partially deleted in new
chr16	2107584	2107804	ENSG00000008710.19|PKD1|pc|chr16:2107584:2107804:-	0	-
#Partially deleted in new
chr16	2107632	2107756	ENSG00000008710.19|PKD1|pc|chr16:2107632:2107756:-	0	-
#Deleted in new
chr16	21129219	21129413	ENSG00000263331.1|AC008551.1|lncRNA|chr16:21129219:21129413:+	0	+
#Deleted in new
chr16	21129981	21130108	ENSG00000263331.1|AC008551.1|lncRNA|chr16:21129981:21130108:+	0	+
#Partially deleted in new
chr16	21166839	21166882	ENSG00000011638.10|TMEM159|pc|chr16:21166839:21166882:+	0	+
#Deleted in new
chr16	21173324	21173362	ENSG00000011638.10|TMEM159|pc|chr16:21173324:21173362:+	0	+
#Deleted in new
chr16	21177136	21177327	ENSG00000011638.10|TMEM159|pc|chr16:21177136:21177327:+	0	+
#Deleted in new
chr16	21178796	21178932	ENSG00000011638.10|TMEM159|pc|chr16:21178796:21178932:+	0	+
#Deleted in new
chr16	2119800	2120248	ENSG00000260447.1|AC009065.3|lncRNA|chr16:2119800:2120248:+	0	+
#Deleted in new
chr16	21238873	21238945	ENSG00000103316.10|CRYM|pc|chr16:21238873:21238945:-	0	-
#Deleted in new
chr16	21283507	21283712	ENSG00000103316.10|CRYM|pc|chr16:21283507:21283712:-	0	-
#Deleted in new
chr16	21283809	21284104	ENSG00000103316.10|CRYM|pc|chr16:21283809:21284104:-	0	-
#Deleted in new
chr16	21302977	21303051	ENSG00000103316.10|CRYM|pc|chr16:21302977:21303051:-	0	-
#Deleted in new
chr16	21302977	21303083	ENSG00000103316.10|CRYM|pc|chr16:21302977:21303083:-	0	-
#Deleted in new
chr16	21402236	21402981	ENSG00000169246.16|NPIPB3|pc|chr16:21402236:21402981:-	0	-
#Deleted in new
chr16	21404722	21405319	ENSG00000169246.16|NPIPB3|pc|chr16:21404722:21405319:-	0	-
#Deleted in new
chr16	21404861	21405293	ENSG00000169246.16|NPIPB3|pc|chr16:21404861:21405293:-	0	-
#Deleted in new
chr16	21405172	21405293	ENSG00000169246.16|NPIPB3|pc|chr16:21405172:21405293:-	0	-
#Deleted in new
chr16	21406037	21406689	ENSG00000169246.16|NPIPB3|pc|chr16:21406037:21406689:-	0	-
#Deleted in new
chr16	21406653	21406689	ENSG00000169246.16|NPIPB3|pc|chr16:21406653:21406689:-	0	-
#Deleted in new
chr16	21406798	21406859	ENSG00000169246.16|NPIPB3|pc|chr16:21406798:21406859:-	0	-
#Deleted in new
chr16	21406829	21406859	ENSG00000169246.16|NPIPB3|pc|chr16:21406829:21406859:-	0	-
#Deleted in new
chr16	21410933	21411078	ENSG00000169246.16|NPIPB3|pc|chr16:21410933:21411078:-	0	-
#Deleted in new
chr16	21410933	21411129	ENSG00000169246.16|NPIPB3|pc|chr16:21410933:21411129:-	0	-
#Deleted in new
chr16	21410969	21411129	ENSG00000169246.16|NPIPB3|pc|chr16:21410969:21411129:-	0	-
#Deleted in new
chr16	21411241	21411341	ENSG00000169246.16|NPIPB3|pc|chr16:21411241:21411341:-	0	-
#Deleted in new
chr16	21411242	21411341	ENSG00000169246.16|NPIPB3|pc|chr16:21411242:21411341:-	0	-
#Deleted in new
chr16	21411264	21411341	ENSG00000169246.16|NPIPB3|pc|chr16:21411264:21411341:-	0	-
#Deleted in new
chr16	21411276	21411341	ENSG00000169246.16|NPIPB3|pc|chr16:21411276:21411341:-	0	-
#Deleted in new
chr16	21414956	21415085	ENSG00000169246.16|NPIPB3|pc|chr16:21414956:21415085:-	0	-
#Deleted in new
chr16	21414956	21415277	ENSG00000169246.16|NPIPB3|pc|chr16:21414956:21415277:-	0	-
#Deleted in new
chr16	21415004	21415085	ENSG00000169246.16|NPIPB3|pc|chr16:21415004:21415085:-	0	-
#Deleted in new
chr16	21415005	21415085	ENSG00000169246.16|NPIPB3|pc|chr16:21415005:21415085:-	0	-
#Deleted in new
chr16	21418808	21418937	ENSG00000169246.16|NPIPB3|pc|chr16:21418808:21418937:-	0	-
#Deleted in new
chr16	21419489	21419575	ENSG00000169246.16|NPIPB3|pc|chr16:21419489:21419575:-	0	-
#Deleted in new
chr16	21419489	21419766	ENSG00000169246.16|NPIPB3|pc|chr16:21419489:21419766:-	0	-
#Deleted in new
chr16	21419634	21419766	ENSG00000169246.16|NPIPB3|pc|chr16:21419634:21419766:-	0	-
#Deleted in new
chr16	21419668	21419766	ENSG00000169246.16|NPIPB3|pc|chr16:21419668:21419766:-	0	-
#Deleted in new
chr16	21425378	21425402	ENSG00000169246.16|NPIPB3|pc|chr16:21425378:21425402:-	0	-
#Deleted in new
chr16	21425378	21425476	ENSG00000169246.16|NPIPB3|pc|chr16:21425378:21425476:-	0	-
#Deleted in new
chr16	21440647	21440719	ENSG00000169246.16|NPIPB3|pc|chr16:21440647:21440719:-	0	-
#Partially deleted in new
chr16	2151129	2151315	ENSG00000167964.12|RAB26|pc|chr16:2151129:2151315:+	0	+
#Deleted in new
chr16	21531101	21531141	ENSG00000273956.1|AC005632.4|lncRNA|chr16:21531101:21531141:-	0	-
#Partially deleted in new
chr16	2153577	2154140	ENSG00000167964.12|RAB26|pc|chr16:2153577:2154140:+	0	+
#Deleted in new
chr1	62162851	62162864	ENSG00000132849.19|PATJ|pc|chr1:62162851:62162864:+	0	+
#Deleted in new
chr1	62162867	62162879	ENSG00000132849.19|PATJ|pc|chr1:62162867:62162879:+	0	+
#Deleted in new
chr16	21684428	21684552	ENSG00000155719.16|OTOA|pc|chr16:21684428:21684552:+	0	+
#Deleted in new
chr16	21704962	21705037	ENSG00000155719.16|OTOA|pc|chr16:21704962:21705037:+	0	+
#Deleted in new
chr16	21727111	21727159	ENSG00000155719.16|OTOA|pc|chr16:21727111:21727159:+	0	+
#Deleted in new
chr1	62178422	62178675	ENSG00000132849.19|PATJ|pc|chr1:62178422:62178675:+	0	+
#Partially deleted in new
chr16	21794094	21795759	ENSG00000260306.1|AC092375.2|lncRNA|chr16:21794094:21795759:-	0	-
#Deleted in new
chr16	21834568	21835517	ENSG00000185864.16|NPIPB4|pc|chr16:21834568:21835517:-	0	-
#Deleted in new
chr16	21834670	21835163	ENSG00000185864.16|NPIPB4|pc|chr16:21834670:21835163:-	0	-
#Deleted in new
chr16	21835630	21835865	ENSG00000185864.16|NPIPB4|pc|chr16:21835630:21835865:-	0	-
#Deleted in new
chr16	21836004	21837744	ENSG00000185864.16|NPIPB4|pc|chr16:21836004:21837744:-	0	-
#Deleted in new
chr16	21836921	21837770	ENSG00000185864.16|NPIPB4|pc|chr16:21836921:21837770:-	0	-
#Deleted in new
chr16	21837473	21837744	ENSG00000185864.16|NPIPB4|pc|chr16:21837473:21837744:-	0	-
#Deleted in new
chr16	21837563	21837744	ENSG00000185864.16|NPIPB4|pc|chr16:21837563:21837744:-	0	-
#Deleted in new
chr16	21837623	21837744	ENSG00000185864.16|NPIPB4|pc|chr16:21837623:21837744:-	0	-
#Deleted in new
chr16	21837692	21837744	ENSG00000185864.16|NPIPB4|pc|chr16:21837692:21837744:-	0	-
#Deleted in new
chr16	21837723	21837744	ENSG00000185864.16|NPIPB4|pc|chr16:21837723:21837744:-	0	-
#Deleted in new
chr16	21838488	21839140	ENSG00000185864.16|NPIPB4|pc|chr16:21838488:21839140:-	0	-
#Deleted in new
chr16	21839104	21839140	ENSG00000185864.16|NPIPB4|pc|chr16:21839104:21839140:-	0	-
#Deleted in new
chr16	21839104	21839310	ENSG00000185864.16|NPIPB4|pc|chr16:21839104:21839310:-	0	-
#Deleted in new
chr16	21839249	21839310	ENSG00000185864.16|NPIPB4|pc|chr16:21839249:21839310:-	0	-
#Deleted in new
chr16	21839249	21839878	ENSG00000185864.16|NPIPB4|pc|chr16:21839249:21839878:-	0	-
#Deleted in new
chr16	21839939	21840008	ENSG00000185864.16|NPIPB4|pc|chr16:21839939:21840008:-	0	-
#Deleted in new
chr16	21840802	21841011	ENSG00000185864.16|NPIPB4|pc|chr16:21840802:21841011:-	0	-
#Deleted in new
chr16	21843385	21843412	ENSG00000185864.16|NPIPB4|pc|chr16:21843385:21843412:-	0	-
#Deleted in new
chr16	21843385	21843480	ENSG00000185864.16|NPIPB4|pc|chr16:21843385:21843480:-	0	-
#Deleted in new
chr16	21843385	21843490	ENSG00000185864.16|NPIPB4|pc|chr16:21843385:21843490:-	0	-
#Deleted in new
chr16	21843385	21843530	ENSG00000185864.16|NPIPB4|pc|chr16:21843385:21843530:-	0	-
#Deleted in new
chr16	21843385	21843581	ENSG00000185864.16|NPIPB4|pc|chr16:21843385:21843581:-	0	-
#Deleted in new
chr16	21843442	21843581	ENSG00000185864.16|NPIPB4|pc|chr16:21843442:21843581:-	0	-
#Deleted in new
chr16	21843485	21843581	ENSG00000185864.16|NPIPB4|pc|chr16:21843485:21843581:-	0	-
#Deleted in new
chr16	21843693	21843793	ENSG00000185864.16|NPIPB4|pc|chr16:21843693:21843793:-	0	-
#Deleted in new
chr16	21843715	21843793	ENSG00000185864.16|NPIPB4|pc|chr16:21843715:21843793:-	0	-
#Deleted in new
chr16	21843743	21843793	ENSG00000185864.16|NPIPB4|pc|chr16:21843743:21843793:-	0	-
#Deleted in new
chr16	21847411	21847541	ENSG00000185864.16|NPIPB4|pc|chr16:21847411:21847541:-	0	-
#Deleted in new
chr16	21847412	21847541	ENSG00000185864.16|NPIPB4|pc|chr16:21847412:21847541:-	0	-
#Deleted in new
chr16	21847413	21847541	ENSG00000185864.16|NPIPB4|pc|chr16:21847413:21847541:-	0	-
#Deleted in new
chr16	21847452	21847541	ENSG00000185864.16|NPIPB4|pc|chr16:21847452:21847541:-	0	-
#Deleted in new
chr16	21847481	21847541	ENSG00000185864.16|NPIPB4|pc|chr16:21847481:21847541:-	0	-
#Deleted in new
chr16	21851078	21851175	ENSG00000185864.16|NPIPB4|pc|chr16:21851078:21851175:-	0	-
#Deleted in new
chr16	21851078	21851207	ENSG00000185864.16|NPIPB4|pc|chr16:21851078:21851207:-	0	-
#Deleted in new
chr16	21851078	21851255	ENSG00000185864.16|NPIPB4|pc|chr16:21851078:21851255:-	0	-
#Deleted in new
chr16	21851359	21851519	ENSG00000185864.16|NPIPB4|pc|chr16:21851359:21851519:-	0	-
#Deleted in new
chr16	21851769	21851855	ENSG00000185864.16|NPIPB4|pc|chr16:21851769:21851855:-	0	-
#Deleted in new
chr16	21851769	21852046	ENSG00000185864.16|NPIPB4|pc|chr16:21851769:21852046:-	0	-
#Deleted in new
chr16	21851914	21852046	ENSG00000185864.16|NPIPB4|pc|chr16:21851914:21852046:-	0	-
#Deleted in new
chr16	21851914	21852220	ENSG00000185864.16|NPIPB4|pc|chr16:21851914:21852220:-	0	-
#Deleted in new
chr16	21851948	21852046	ENSG00000185864.16|NPIPB4|pc|chr16:21851948:21852046:-	0	-
#Deleted in new
chr16	21857658	21857682	ENSG00000185864.16|NPIPB4|pc|chr16:21857658:21857682:-	0	-
#Deleted in new
chr16	21857658	21857756	ENSG00000185864.16|NPIPB4|pc|chr16:21857658:21857756:-	0	-
#Deleted in new
chr16	21866126	21866308	ENSG00000185864.16|NPIPB4|pc|chr16:21866126:21866308:-	0	-
#Partially deleted in new
chr1	6219235	6220805	ENSG00000158286.12|RNF207|pc|chr1:6219235:6220805:+	0	+
#Partially deleted in new
chr1	6219235	6221299	ENSG00000158286.12|RNF207|pc|chr1:6219235:6221299:+	0	+
#Deleted in new
chr1	62194830	62194921	ENSG00000240563.1|L1TD1|pc|chr1:62194830:62194921:+	0	+
#Deleted in new
chr16	21959338	21959405	ENSG00000140740.10|UQCRC2|pc|chr16:21959338:21959405:+	0	+
#Deleted in new
chr16	21959338	21959555	ENSG00000140740.10|UQCRC2|pc|chr16:21959338:21959555:+	0	+
#Deleted in new
chr16	21959338	21959780	ENSG00000140740.10|UQCRC2|pc|chr16:21959338:21959780:+	0	+
#Deleted in new
chr16	21961327	21961465	ENSG00000140740.10|UQCRC2|pc|chr16:21961327:21961465:+	0	+
#Deleted in new
chr16	21961461	21961465	ENSG00000140740.10|UQCRC2|pc|chr16:21961461:21961465:+	0	+
#Deleted in new
chr1	62196434	62196528	ENSG00000240563.1|L1TD1|pc|chr1:62196434:62196528:+	0	+
#Partially deleted in new
chr16	21976166	21976947	ENSG00000140740.10|UQCRC2|pc|chr16:21976166:21976947:+	0	+
#Deleted in new
chr16	21995237	21995308	ENSG00000155714.13|PDZD9|pc|chr16:21995237:21995308:-	0	-
#Partially deleted in new
chr16	22007479	22008062	ENSG00000275445.1|AC092119.3|lncRNA|chr16:22007479:22008062:-	0	-
#Deleted in new
chr16	22007637	22007696	ENSG00000185716.11|C16orf52|pc|chr16:22007637:22007696:+	0	+
#Deleted in new
chr16	22085130	22085275	ENSG00000185716.11|C16orf52|pc|chr16:22085130:22085275:+	0	+
#Deleted in new
chr16	22085207	22085275	ENSG00000185716.11|C16orf52|pc|chr16:22085207:22085275:+	0	+
#Deleted in new
chr16	22085643	22085750	ENSG00000185716.11|C16orf52|pc|chr16:22085643:22085750:+	0	+
#Deleted in new
chr16	22085798	22086194	ENSG00000260277.1|AC009019.1|lncRNA|chr16:22085798:22086194:-	0	-
#Deleted in new
chr16	22086986	22087251	ENSG00000260277.1|AC009019.1|lncRNA|chr16:22086986:22087251:-	0	-
#Deleted in new
chr16	22087056	22087533	ENSG00000185716.11|C16orf52|pc|chr16:22087056:22087533:+	0	+
#Deleted in new
chr16	22087056	22087534	ENSG00000185716.11|C16orf52|pc|chr16:22087056:22087534:+	0	+
#Deleted in new
chr16	22087097	22087106	ENSG00000260277.1|AC009019.1|lncRNA|chr16:22087097:22087106:-	0	-
#Deleted in new
chr16	22096858	22096945	ENSG00000175267.14|VWA3A|pc|chr16:22096858:22096945:+	0	+
#Deleted in new
chr16	22367045	22367166	ENSG00000260635.1|AC092338.1|lncRNA|chr16:22367045:22367166:+	0	+
#Deleted in new
chr16	22378140	22378180	ENSG00000260790.1|AC092338.2|lncRNA|chr16:22378140:22378180:+	0	+
#Partially deleted in new
chr16	2240486	2241090	ENSG00000261663.1|AC009065.8|lncRNA|chr16:2240486:2241090:+	0	+
#Deleted in new
chr16	2241634	2241818	ENSG00000261663.1|AC009065.8|lncRNA|chr16:2241634:2241818:+	0	+
#Deleted in new
chr16	22422160	22422214	ENSG00000140743.7|CDR2|pc|chr16:22422160:22422214:-	0	-
#Partially deleted in new
chr16	2242414	2243224	ENSG00000167969.12|ECI1|pc|chr16:2242414:2243224:-	0	-
#Deleted in new
chr16	22431523	22431596	ENSG00000140743.7|CDR2|pc|chr16:22431523:22431596:-	0	-
#Deleted in new
chr16	22433592	22433665	ENSG00000140743.7|CDR2|pc|chr16:22433592:22433665:-	0	-
#Deleted in new
chr16	22504850	22505057	ENSG00000243716.10|NPIPB5|pc|chr16:22504850:22505057:+	0	+
#Deleted in new
chr16	22513057	22513521	ENSG00000243716.10|NPIPB5|pc|chr16:22513057:22513521:+	0	+
#Partially deleted in new
chr16	22513394	22513600	ENSG00000243716.10|NPIPB5|pc|chr16:22513394:22513600:+	0	+
#Deleted in new
chr16	22513423	22513521	ENSG00000243716.10|NPIPB5|pc|chr16:22513423:22513521:+	0	+
#Deleted in new
chr16	2251684	2252300	ENSG00000167969.12|ECI1|pc|chr16:2251684:2252300:-	0	-
#Deleted in new
chr16	22519137	22519235	ENSG00000243716.10|NPIPB5|pc|chr16:22519137:22519235:+	0	+
#Deleted in new
chr16	22519137	22519269	ENSG00000243716.10|NPIPB5|pc|chr16:22519137:22519269:+	0	+
#Deleted in new
chr16	22519137	22519414	ENSG00000243716.10|NPIPB5|pc|chr16:22519137:22519414:+	0	+
#Deleted in new
chr16	22519328	22519414	ENSG00000243716.10|NPIPB5|pc|chr16:22519328:22519414:+	0	+
#Deleted in new
chr16	22519966	22520095	ENSG00000243716.10|NPIPB5|pc|chr16:22519966:22520095:+	0	+
#Deleted in new
chr16	22520876	22520896	ENSG00000243716.10|NPIPB5|pc|chr16:22520876:22520896:+	0	+
#Deleted in new
chr16	22523522	22523948	ENSG00000243716.10|NPIPB5|pc|chr16:22523522:22523948:+	0	+
#Deleted in new
chr16	22523627	22523948	ENSG00000243716.10|NPIPB5|pc|chr16:22523627:22523948:+	0	+
#Deleted in new
chr16	22523819	22523900	ENSG00000243716.10|NPIPB5|pc|chr16:22523819:22523900:+	0	+
#Deleted in new
chr16	22523819	22523908	ENSG00000243716.10|NPIPB5|pc|chr16:22523819:22523908:+	0	+
#Deleted in new
chr16	22523819	22523934	ENSG00000243716.10|NPIPB5|pc|chr16:22523819:22523934:+	0	+
#Deleted in new
chr16	22523819	22523948	ENSG00000243716.10|NPIPB5|pc|chr16:22523819:22523948:+	0	+
#Deleted in new
chr16	22523842	22523948	ENSG00000243716.10|NPIPB5|pc|chr16:22523842:22523948:+	0	+
#Deleted in new
chr16	22523882	22523948	ENSG00000243716.10|NPIPB5|pc|chr16:22523882:22523948:+	0	+
#Deleted in new
chr16	22527565	22527630	ENSG00000243716.10|NPIPB5|pc|chr16:22527565:22527630:+	0	+
#Deleted in new
chr16	22527565	22527642	ENSG00000243716.10|NPIPB5|pc|chr16:22527565:22527642:+	0	+
#Deleted in new
chr16	22527565	22527665	ENSG00000243716.10|NPIPB5|pc|chr16:22527565:22527665:+	0	+
#Deleted in new
chr16	22527742	22527973	ENSG00000243716.10|NPIPB5|pc|chr16:22527742:22527973:+	0	+
#Deleted in new
chr16	22527777	22527787	ENSG00000243716.10|NPIPB5|pc|chr16:22527777:22527787:+	0	+
#Deleted in new
chr16	22527777	22527880	ENSG00000243716.10|NPIPB5|pc|chr16:22527777:22527880:+	0	+
#Deleted in new
chr16	22527777	22527937	ENSG00000243716.10|NPIPB5|pc|chr16:22527777:22527937:+	0	+
#Deleted in new
chr16	22527777	22527973	ENSG00000243716.10|NPIPB5|pc|chr16:22527777:22527973:+	0	+
#Deleted in new
chr16	22527777	22528107	ENSG00000243716.10|NPIPB5|pc|chr16:22527777:22528107:+	0	+
#Deleted in new
chr16	22527828	22527973	ENSG00000243716.10|NPIPB5|pc|chr16:22527828:22527973:+	0	+
#Deleted in new
chr16	22530942	22531044	ENSG00000243716.10|NPIPB5|pc|chr16:22530942:22531044:+	0	+
#Deleted in new
chr16	22531491	22532120	ENSG00000243716.10|NPIPB5|pc|chr16:22531491:22532120:+	0	+
#Deleted in new
chr16	22532059	22532089	ENSG00000243716.10|NPIPB5|pc|chr16:22532059:22532089:+	0	+
#Deleted in new
chr16	22532059	22532120	ENSG00000243716.10|NPIPB5|pc|chr16:22532059:22532120:+	0	+
#Deleted in new
chr16	22532229	22532265	ENSG00000243716.10|NPIPB5|pc|chr16:22532229:22532265:+	0	+
#Deleted in new
chr16	22532229	22532881	ENSG00000243716.10|NPIPB5|pc|chr16:22532229:22532881:+	0	+
#Deleted in new
chr16	22533599	22534448	ENSG00000243716.10|NPIPB5|pc|chr16:22533599:22534448:+	0	+
#Deleted in new
chr16	22533625	22533725	ENSG00000243716.10|NPIPB5|pc|chr16:22533625:22533725:+	0	+
#Deleted in new
chr16	22533625	22533746	ENSG00000243716.10|NPIPB5|pc|chr16:22533625:22533746:+	0	+
#Deleted in new
chr16	22533625	22533812	ENSG00000243716.10|NPIPB5|pc|chr16:22533625:22533812:+	0	+
#Deleted in new
chr16	22533625	22534708	ENSG00000243716.10|NPIPB5|pc|chr16:22533625:22534708:+	0	+
#Deleted in new
chr16	22533625	22534769	ENSG00000243716.10|NPIPB5|pc|chr16:22533625:22534769:+	0	+
#Deleted in new
chr16	22533625	22536477	ENSG00000243716.10|NPIPB5|pc|chr16:22533625:22536477:+	0	+
#Deleted in new
chr16	22533625	22536505	ENSG00000243716.10|NPIPB5|pc|chr16:22533625:22536505:+	0	+
#Deleted in new
chr16	22533625	22536513	ENSG00000243716.10|NPIPB5|pc|chr16:22533625:22536513:+	0	+
#Deleted in new
chr16	22533625	22536521	ENSG00000243716.10|NPIPB5|pc|chr16:22533625:22536521:+	0	+
#Deleted in new
chr16	22534710	22534813	ENSG00000243716.10|NPIPB5|pc|chr16:22534710:22534813:+	0	+
#Deleted in new
chr16	22534832	22536385	ENSG00000243716.10|NPIPB5|pc|chr16:22534832:22536385:+	0	+
#Deleted in new
chr16	22535939	22536432	ENSG00000243716.10|NPIPB5|pc|chr16:22535939:22536432:+	0	+
#Partially deleted in new
chr16	2255584	2256866	ENSG00000205937.11|RNPS1|pc|chr16:2255584:2256866:-	0	-
#Partially deleted in new
chr16	2255584	2258756	ENSG00000205937.11|RNPS1|pc|chr16:2255584:2258756:-	0	-
#Partially deleted in new
chr16	22610530	22612196	ENSG00000260973.1|AC009021.2|lncRNA|chr16:22610530:22612196:-	0	-
#Partially deleted in new
chr16	22612542	22612887	ENSG00000260905.1|AC009021.1|lncRNA|chr16:22612542:22612887:-	0	-
#Deleted in new
chr16	22613453	22613483	ENSG00000260905.1|AC009021.1|lncRNA|chr16:22613453:22613483:-	0	-
#Partially deleted in new
chr16	2265502	2267328	ENSG00000205937.11|RNPS1|pc|chr16:2265502:2267328:-	0	-
#Deleted in new
chr16	2266109	2266216	ENSG00000205937.11|RNPS1|pc|chr16:2266109:2266216:-	0	-
#Deleted in new
chr16	2266109	2266523	ENSG00000205937.11|RNPS1|pc|chr16:2266109:2266523:-	0	-
#Deleted in new
chr16	2271675	2271891	ENSG00000260778.5|AC009065.4|lncRNA|chr16:2271675:2271891:+	0	+
#Deleted in new
chr16	2272986	2273039	ENSG00000260778.5|AC009065.4|lncRNA|chr16:2272986:2273039:+	0	+
#Deleted in new
chr16	2272986	2273124	ENSG00000260778.5|AC009065.4|lncRNA|chr16:2272986:2273124:+	0	+
#Deleted in new
chr16	2272986	2273418	ENSG00000260778.5|AC009065.4|lncRNA|chr16:2272986:2273418:+	0	+
#Deleted in new
chr16	22854663	22854781	ENSG00000122254.6|HS3ST2|pc|chr16:22854663:22854781:+	0	+
#Deleted in new
chr16	22909	23085	ENSG00000231439.4|WASIR2|lncRNA|chr16:22909:23085:+	0	+
#Deleted in new
chr16	23020336	23020619	ENSG00000261090.1|AC127459.2|lncRNA|chr16:23020336:23020619:+	0	+
#Partially deleted in new
chr16	23196403	23196547	ENSG00000260741.1|AC099482.1|lncRNA|chr16:23196403:23196547:-	0	-
#Deleted in new
chr16	23278230	23278340	ENSG00000168447.10|SCNN1B|pc|chr16:23278230:23278340:+	0	+
#Deleted in new
chr16	23283736	23283804	ENSG00000168447.10|SCNN1B|pc|chr16:23283736:23283804:+	0	+
#Deleted in new
chr16	23323553	23323578	ENSG00000168447.10|SCNN1B|pc|chr16:23323553:23323578:+	0	+
#Deleted in new
chr16	23358201	23358545	ENSG00000168447.10|SCNN1B|pc|chr16:23358201:23358545:+	0	+
#Deleted in new
chr16	23359204	23359379	ENSG00000168447.10|SCNN1B|pc|chr16:23359204:23359379:+	0	+
#Deleted in new
chr16	23389869	23390284	ENSG00000168434.12|COG7|pc|chr16:23389869:23390284:-	0	-
#Deleted in new
chr16	23394887	23394946	ENSG00000168434.12|COG7|pc|chr16:23394887:23394946:-	0	-
#Partially deleted in new
chr16	23412379	23416680	ENSG00000280039.1|RN7SKP23|lncRNA|chr16:23412379:23416680:+	0	+
#Deleted in new
chr16	23446445	23447282	ENSG00000259782.2|AC008915.1|lncRNA|chr16:23446445:23447282:-	0	-
#Deleted in new
chr16	234545	234857	ENSG00000167930.15|FAM234A|pc|chr16:234545:234857:+	0	+
#Deleted in new
chr16	23455469	23455530	ENSG00000260136.5|AC008915.2|lncRNA|chr16:23455469:23455530:+	0	+
#Deleted in new
chr16	23455469	23455789	ENSG00000260136.5|AC008915.2|lncRNA|chr16:23455469:23455789:+	0	+
#Deleted in new
chr16	23457427	23457588	ENSG00000260136.5|AC008915.2|lncRNA|chr16:23457427:23457588:+	0	+
#Deleted in new
chr16	23457427	23457606	ENSG00000260136.5|AC008915.2|lncRNA|chr16:23457427:23457606:+	0	+
#Deleted in new
chr16	23464322	23465398	ENSG00000103365.15|GGA2|pc|chr16:23464322:23465398:-	0	-
#Deleted in new
chr16	234801	234857	ENSG00000167930.15|FAM234A|pc|chr16:234801:234857:+	0	+
#Deleted in new
chr16	234817	234857	ENSG00000167930.15|FAM234A|pc|chr16:234817:234857:+	0	+
#Deleted in new
chr16	234826	234857	ENSG00000167930.15|FAM234A|pc|chr16:234826:234857:+	0	+
#Deleted in new
chr16	234828	234857	ENSG00000167930.15|FAM234A|pc|chr16:234828:234857:+	0	+
#Deleted in new
chr16	234829	234857	ENSG00000167930.15|FAM234A|pc|chr16:234829:234857:+	0	+
#Deleted in new
chr16	234833	234857	ENSG00000167930.15|FAM234A|pc|chr16:234833:234857:+	0	+
#Deleted in new
chr16	234837	234857	ENSG00000167930.15|FAM234A|pc|chr16:234837:234857:+	0	+
#Deleted in new
chr16	234843	234857	ENSG00000167930.15|FAM234A|pc|chr16:234843:234857:+	0	+
#Deleted in new
chr16	234845	234857	ENSG00000167930.15|FAM234A|pc|chr16:234845:234857:+	0	+
#Deleted in new
chr16	234846	234857	ENSG00000167930.15|FAM234A|pc|chr16:234846:234857:+	0	+
#Partially deleted in new
chr16	23495342	23495778	ENSG00000103365.15|GGA2|pc|chr16:23495342:23495778:-	0	-
#Deleted in new
chr16	23519586	23519639	ENSG00000103365.15|GGA2|pc|chr16:23519586:23519639:-	0	-
#Duplicated in new
chr16	23521792	23521995	ENSG00000103365.15|GGA2|pc|chr16:23521792:23521995:-	0	-
#Deleted in new
chr16	23545000	23545262	ENSG00000103356.15|EARS2|pc|chr16:23545000:23545262:-	0	-
#Deleted in new
chr16	23546381	23546434	ENSG00000103356.15|EARS2|pc|chr16:23546381:23546434:-	0	-
#Partially deleted in new
chr16	23553006	23553123	ENSG00000103356.15|EARS2|pc|chr16:23553006:23553123:-	0	-
#Partially deleted in new
chr16	23553043	23553123	ENSG00000103356.15|EARS2|pc|chr16:23553043:23553123:-	0	-
#Deleted in new
chr16	23590885	23591153	ENSG00000004779.9|NDUFAB1|pc|chr16:23590885:23591153:-	0	-
#Partially deleted in new
chr16	23595428	23595638	ENSG00000004779.9|NDUFAB1|pc|chr16:23595428:23595638:-	0	-
#Deleted in new
chr16	23605840	23605956	ENSG00000261723.1|AC008870.4|lncRNA|chr16:23605840:23605956:+	0	+
#Deleted in new
chr16	23607314	23607383	ENSG00000261723.1|AC008870.4|lncRNA|chr16:23607314:23607383:+	0	+
#Deleted in new
chr16	23617599	23617833	ENSG00000261723.1|AC008870.4|lncRNA|chr16:23617599:23617833:+	0	+
#Partially deleted in new
chr1	6236239	6236336	ENSG00000225077.2|LINC00337|lncRNA|chr1:6236239:6236336:+	0	+
#Deleted in new
chr16	23650755	23651147	ENSG00000166847.9|DCTN5|pc|chr16:23650755:23651147:+	0	+
#Deleted in new
chr16	23657485	23657586	ENSG00000166847.9|DCTN5|pc|chr16:23657485:23657586:+	0	+
#Deleted in new
chr16	23672851	23673673	ENSG00000260482.3|AC008870.1|lncRNA|chr16:23672851:23673673:+	0	+
#Deleted in new
chr16	23675193	23675499	ENSG00000260482.3|AC008870.1|lncRNA|chr16:23675193:23675499:+	0	+
#Deleted in new
chr1	6236965	6237150	ENSG00000225077.2|LINC00337|lncRNA|chr1:6236965:6237150:+	0	+
#Partially deleted in new
chr16	23696664	23697314	ENSG00000278912.1|AC008870.5|lncRNA|chr16:23696664:23697314:-	0	-
#Deleted in new
chr16	23709170	23709270	ENSG00000134398.14|ERN2|pc|chr16:23709170:23709270:-	0	-
#Deleted in new
chr1	6237244	6237345	ENSG00000225077.2|LINC00337|lncRNA|chr1:6237244:6237345:+	0	+
#Deleted in new
chr1	6237770	6237848	ENSG00000225077.2|LINC00337|lncRNA|chr1:6237770:6237848:+	0	+
#Deleted in new
chr1	6237813	6237848	ENSG00000225077.2|LINC00337|lncRNA|chr1:6237813:6237848:+	0	+
#Deleted in new
chr16	23962950	23963351	ENSG00000279276.1|AC130454.1|lncRNA|chr16:23962950:23963351:+	0	+
#Deleted in new
chr16	240187	240276	ENSG00000167930.15|FAM234A|pc|chr16:240187:240276:+	0	+
#Deleted in new
chr16	24098238	24099971	ENSG00000279202.1|AC130448.1|lncRNA|chr16:24098238:24099971:+	0	+
#Deleted in new
chr16	24111073	24111321	ENSG00000166501.12|PRKCB|pc|chr16:24111073:24111321:+	0	+
#Deleted in new
chr16	24151684	24151855	ENSG00000166501.12|PRKCB|pc|chr16:24151684:24151855:+	0	+
#Deleted in new
chr16	24237981	24238033	ENSG00000260264.1|LINC2194|lncRNA|chr16:24237981:24238033:+	0	+
#Deleted in new
chr16	24245	25123	ENSG00000231439.4|WASIR2|lncRNA|chr16:24245:25123:+	0	+
#Deleted in new
chr16	24251932	24252131	ENSG00000260264.1|LINC2194|lncRNA|chr16:24251932:24252131:+	0	+
#Partially deleted in new
chr16	24472797	24479113	ENSG00000260072.1|AC008938.1|lncRNA|chr16:24472797:24479113:-	0	-
#Deleted in new
chr16	24494983	24495177	ENSG00000260072.1|AC008938.1|lncRNA|chr16:24494983:24495177:-	0	-
#Deleted in new
chr16	2452580	2452977	ENSG00000260095.1|AC106820.3|lncRNA|chr16:2452580:2452977:-	0	-
#Partially deleted in new
chr16	24537692	24537933	ENSG00000122257.18|RBBP6|pc|chr16:24537692:24537933:+	0	+
#Partially deleted in new
chr16	24537711	24537933	ENSG00000122257.18|RBBP6|pc|chr16:24537711:24537933:+	0	+
#Partially deleted in new
chr1	62457537	62459199	ENSG00000116641.17|DOCK7|pc|chr1:62457537:62459199:-	0	-
#Deleted in new
chr16	2458809	2458954	ENSG00000260874.5|AC106820.5|lncRNA|chr16:2458809:2458954:-	0	-
#Deleted in new
chr1	62460933	62460970	ENSG00000116641.17|DOCK7|pc|chr1:62460933:62460970:-	0	-
#Partially deleted in new
chr16	24661421	24664004	ENSG00000224310.1|LINC01567|lncRNA|chr16:24661421:24664004:-	0	-
#Deleted in new
chr16	246956	247069	ENSG00000167930.15|FAM234A|pc|chr16:246956:247069:+	0	+
#Deleted in new
chr1	62478700	62478741	ENSG00000116641.17|DOCK7|pc|chr1:62478700:62478741:-	0	-
#Deleted in new
chr16	24803450	24803895	ENSG00000261669.1|AC008731.1|lncRNA|chr16:24803450:24803895:-	0	-
#Partially deleted in new
chr16	24815146	24816328	ENSG00000090905.18|TNRC6A|pc|chr16:24815146:24816328:+	0	+
#Partially deleted in new
chr16	24815146	24816347	ENSG00000090905.18|TNRC6A|pc|chr16:24815146:24816347:+	0	+
#Deleted in new
chr16	24815354	24815475	ENSG00000090905.18|TNRC6A|pc|chr16:24815354:24815475:+	0	+
#Deleted in new
chr16	24819605	24819739	ENSG00000261669.1|AC008731.1|lncRNA|chr16:24819605:24819739:-	0	-
#Deleted in new
chr16	248243	248397	ENSG00000167930.15|FAM234A|pc|chr16:248243:248397:+	0	+
#Deleted in new
chr16	24827500	24827632	ENSG00000090905.18|TNRC6A|pc|chr16:24827500:24827632:+	0	+
#Deleted in new
chr16	24859186	24859295	ENSG00000158865.12|SLC5A11|pc|chr16:24859186:24859295:+	0	+
#Deleted in new
chr16	24861982	24862074	ENSG00000158865.12|SLC5A11|pc|chr16:24861982:24862074:+	0	+
#Deleted in new
chr1	62495846	62495904	ENSG00000116641.17|DOCK7|pc|chr1:62495846:62495904:-	0	-
#Deleted in new
chr16	2504533	2506124	ENSG00000162065.12|TBC1D24|pc|chr16:2504533:2506124:+	0	+
#Deleted in new
chr16	25066936	25067646	ENSG00000262155.1|LINC02175|lncRNA|chr16:25066936:25067646:+	0	+
#Deleted in new
chr16	25067778	25068943	ENSG00000262155.1|LINC02175|lncRNA|chr16:25067778:25068943:+	0	+
#Partially deleted in new
chr16	2507045	2509560	ENSG00000162065.12|TBC1D24|pc|chr16:2507045:2509560:+	0	+
#Partially deleted in new
chr16	25086332	25086723	ENSG00000260448.5|LCMT1-AS1|lncRNA|chr16:25086332:25086723:-	0	-
#Deleted in new
chr16	25125963	25126126	ENSG00000205629.11|LCMT1|pc|chr16:25125963:25126126:+	0	+
#Deleted in new
chr16	25140576	25140858	ENSG00000260034.1|LCMT1-AS2|lncRNA|chr16:25140576:25140858:-	0	-
#Deleted in new
chr16	25140582	25146248	ENSG00000260034.1|LCMT1-AS2|lncRNA|chr16:25140582:25146248:-	0	-
#Deleted in new
chr16	25146247	25148239	ENSG00000260034.1|LCMT1-AS2|lncRNA|chr16:25146247:25148239:-	0	-
#Deleted in new
chr16	25148705	25149032	ENSG00000260034.1|LCMT1-AS2|lncRNA|chr16:25148705:25149032:-	0	-
#Deleted in new
chr1	62516800	62516841	ENSG00000116641.17|DOCK7|pc|chr1:62516800:62516841:-	0	-
#Deleted in new
chr16	25215730	25215792	ENSG00000103375.10|AQP8|pc|chr16:25215730:25215792:+	0	+
#Partially deleted in new
chr16	25257951	25261066	ENSG00000274925.1|AC008741.2|lncRNA|chr16:25257951:25261066:+	0	+
#Deleted in new
chr16	2527079	2527130	ENSG00000162066.14|AMDHD2|pc|chr16:2527079:2527130:+	0	+
#Deleted in new
chr16	2530931	2531417	ENSG00000205923.3|CEMP1|pc|chr16:2530931:2531417:-	0	-
#Deleted in new
chr16	253832	253929	ENSG00000167930.15|FAM234A|pc|chr16:253832:253929:+	0	+
#Deleted in new
chr16	2550602	2550709	ENSG00000140992.18|PDPK1|pc|chr16:2550602:2550709:+	0	+
#Partially deleted in new
chr16	2554059	2556060	ENSG00000261613.2|AC093525.6|lncRNA|chr16:2554059:2556060:-	0	-
#Deleted in new
chr16	2554974	2555439	ENSG00000261288.1|AC093525.5|lncRNA|chr16:2554974:2555439:+	0	+
#Deleted in new
chr16	2555998	2556105	ENSG00000261288.1|AC093525.5|lncRNA|chr16:2555998:2556105:+	0	+
#Deleted in new
chr16	2569042	2569474	ENSG00000261140.1|AC093525.4|lncRNA|chr16:2569042:2569474:-	0	-
#Deleted in new
chr16	2570387	2570818	ENSG00000140992.18|PDPK1|pc|chr16:2570387:2570818:+	0	+
#Deleted in new
chr16	2571073	2571341	ENSG00000140992.18|PDPK1|pc|chr16:2571073:2571341:+	0	+
#Deleted in new
chr16	2571569	2571816	ENSG00000260436.1|AC093525.3|lncRNA|chr16:2571569:2571816:-	0	-
#Deleted in new
chr16	2571909	2571936	ENSG00000261140.1|AC093525.4|lncRNA|chr16:2571909:2571936:-	0	-
#Deleted in new
chr16	2572313	2572353	ENSG00000260436.1|AC093525.3|lncRNA|chr16:2572313:2572353:-	0	-
#Partially deleted in new
chr16	2575627	2577373	ENSG00000279568.1|AC093525.9|lncRNA|chr16:2575627:2577373:-	0	-
#Deleted in new
chr16	2578394	2579963	ENSG00000280402.1|AC093525.10|lncRNA|chr16:2578394:2579963:+	0	+
#Deleted in new
chr16	2592513	2594563	ENSG00000279162.1|AC141586.5|lncRNA|chr16:2592513:2594563:+	0	+
#Partially deleted in new
chr16	260412	260788	ENSG00000167930.15|FAM234A|pc|chr16:260412:260788:+	0	+
#Deleted in new
chr16	2620221	2621794	ENSG00000279057.1|AC141586.4|lncRNA|chr16:2620221:2621794:-	0	-
#Deleted in new
chr1	62627558	62629673	ENSG00000116641.17|DOCK7|pc|chr1:62627558:62629673:-	0	-
#Deleted in new
chr16	26302063	26302205	ENSG00000231876.7|AC009158.1|lncRNA|chr16:26302063:26302205:+	0	+
#Deleted in new
chr16	26319146	26319355	ENSG00000231876.7|AC009158.1|lncRNA|chr16:26319146:26319355:+	0	+
#Deleted in new
chr16	26321251	26321341	ENSG00000231876.7|AC009158.1|lncRNA|chr16:26321251:26321341:+	0	+
#Deleted in new
chr16	26324144	26324263	ENSG00000231876.7|AC009158.1|lncRNA|chr16:26324144:26324263:+	0	+
#Partially deleted in new
chr1	62634376	62635691	ENSG00000116641.17|DOCK7|pc|chr1:62634376:62635691:-	0	-
#Deleted in new
chr1	62638310	62638379	ENSG00000116641.17|DOCK7|pc|chr1:62638310:62638379:-	0	-
#Deleted in new
chr16	2644083	2644190	ENSG00000260176.1|AC141586.2|lncRNA|chr16:2644083:2644190:-	0	-
#Deleted in new
chr16	2644749	2645214	ENSG00000260176.1|AC141586.2|lncRNA|chr16:2644749:2645214:-	0	-
#Deleted in new
chr16	2660348	2661381	ENSG00000260565.6|ERVK13-1|lncRNA|chr16:2660348:2661381:-	0	-
#Deleted in new
chr16	2660349	2665350	ENSG00000260565.6|ERVK13-1|lncRNA|chr16:2660349:2665350:-	0	-
#Deleted in new
chr16	2661148	2663407	ENSG00000260565.6|ERVK13-1|lncRNA|chr16:2661148:2663407:-	0	-
#Deleted in new
chr16	2661195	2663407	ENSG00000260565.6|ERVK13-1|lncRNA|chr16:2661195:2663407:-	0	-
#Deleted in new
chr16	2663081	2663407	ENSG00000260565.6|ERVK13-1|lncRNA|chr16:2663081:2663407:-	0	-
#Deleted in new
chr16	2663083	2663407	ENSG00000260565.6|ERVK13-1|lncRNA|chr16:2663083:2663407:-	0	-
#Deleted in new
chr16	2663316	2663407	ENSG00000260565.6|ERVK13-1|lncRNA|chr16:2663316:2663407:-	0	-
#Deleted in new
chr16	2667974	2668040	ENSG00000260565.6|ERVK13-1|lncRNA|chr16:2667974:2668040:-	0	-
#Deleted in new
chr16	2669410	2669561	ENSG00000260565.6|ERVK13-1|lncRNA|chr16:2669410:2669561:-	0	-
#Deleted in new
chr16	26721873	26722223	ENSG00000260580.1|AC009035.1|lncRNA|chr16:26721873:26722223:+	0	+
#Partially deleted in new
chr16	268300	269383	ENSG00000076344.15|RGS11|pc|chr16:268300:269383:-	0	-
#Partially deleted in new
chr16	268310	269383	ENSG00000076344.15|RGS11|pc|chr16:268310:269383:-	0	-
#Partially deleted in new
chr16	268318	269383	ENSG00000076344.15|RGS11|pc|chr16:268318:269383:-	0	-
#Deleted in new
chr16	268726	269005	ENSG00000242173.8|ARHGDIG|pc|chr16:268726:269005:+	0	+
#Deleted in new
chr16	268775	268971	ENSG00000167930.15|FAM234A|pc|chr16:268775:268971:+	0	+
#Deleted in new
chr16	268775	269005	ENSG00000269881.1|AC004754.1|pc|chr16:268775:269005:+	0	+
#Deleted in new
chr16	268981	269005	ENSG00000242173.8|ARHGDIG|pc|chr16:268981:269005:+	0	+
#Partially deleted in new
chr16	27158450	27158692	ENSG00000261045.2|LINC02129|lncRNA|chr16:27158450:27158692:-	0	-
#Deleted in new
chr16	27161397	27161672	ENSG00000261045.2|LINC02129|lncRNA|chr16:27161397:27161672:-	0	-
#Deleted in new
chr16	2716499	2716526	ENSG00000172382.9|PRSS27|pc|chr16:2716499:2716526:-	0	-
#Deleted in new
chr16	27171829	27171979	ENSG00000261045.2|LINC02129|lncRNA|chr16:27171829:27171979:-	0	-
#Deleted in new
chr16	27176562	27176587	ENSG00000261045.2|LINC02129|lncRNA|chr16:27176562:27176587:-	0	-
#Deleted in new
chr16	27203802	27203865	ENSG00000155666.11|KDM8|pc|chr16:27203802:27203865:+	0	+
#Deleted in new
chr16	27203974	27204175	ENSG00000155666.11|KDM8|pc|chr16:27203974:27204175:+	0	+
#Deleted in new
chr16	27203995	27204164	ENSG00000155666.11|KDM8|pc|chr16:27203995:27204164:+	0	+
#Deleted in new
chr16	27204077	27204175	ENSG00000155666.11|KDM8|pc|chr16:27204077:27204175:+	0	+
#Deleted in new
chr16	27204282	27204444	ENSG00000155666.11|KDM8|pc|chr16:27204282:27204444:+	0	+
#Deleted in new
chr16	27206188	27206249	ENSG00000155666.11|KDM8|pc|chr16:27206188:27206249:+	0	+
#Deleted in new
chr16	27211145	27211217	ENSG00000155666.11|KDM8|pc|chr16:27211145:27211217:+	0	+
#Deleted in new
chr16	27211145	27211715	ENSG00000155666.11|KDM8|pc|chr16:27211145:27211715:+	0	+
#Partially deleted in new
chr16	27220565	27221722	ENSG00000155666.11|KDM8|pc|chr16:27220565:27221722:+	0	+
#Partially deleted in new
chr16	27220565	27221768	ENSG00000155666.11|KDM8|pc|chr16:27220565:27221768:+	0	+
#Deleted in new
chr16	27230590	27230839	ENSG00000169189.16|NSMCE1|pc|chr16:27230590:27230839:-	0	-
#Deleted in new
chr16	27266323	27266609	ENSG00000169189.16|NSMCE1|pc|chr16:27266323:27266609:-	0	-
#Deleted in new
chr16	27268162	27268374	ENSG00000169189.16|NSMCE1|pc|chr16:27268162:27268374:-	0	-
#Deleted in new
chr16	27268204	27268244	ENSG00000245888.6|FLJ21408|lncRNA|chr16:27268204:27268244:+	0	+
#Deleted in new
chr16	27268399	27268579	ENSG00000169189.16|NSMCE1|pc|chr16:27268399:27268579:-	0	-
#Deleted in new
chr16	27268705	27268723	ENSG00000169189.16|NSMCE1|pc|chr16:27268705:27268723:-	0	-
#Deleted in new
chr16	27268705	27268724	ENSG00000169189.16|NSMCE1|pc|chr16:27268705:27268724:-	0	-
#Deleted in new
chr16	27268705	27268728	ENSG00000169189.16|NSMCE1|pc|chr16:27268705:27268728:-	0	-
#Deleted in new
chr16	27268705	27268733	ENSG00000169189.16|NSMCE1|pc|chr16:27268705:27268733:-	0	-
#Deleted in new
chr16	27268705	27268740	ENSG00000169189.16|NSMCE1|pc|chr16:27268705:27268740:-	0	-
#Deleted in new
chr16	27268705	27268741	ENSG00000169189.16|NSMCE1|pc|chr16:27268705:27268741:-	0	-
#Deleted in new
chr16	27268705	27268760	ENSG00000169189.16|NSMCE1|pc|chr16:27268705:27268760:-	0	-
#Deleted in new
chr16	27268705	27268762	ENSG00000169189.16|NSMCE1|pc|chr16:27268705:27268762:-	0	-
#Deleted in new
chr16	27268705	27268764	ENSG00000169189.16|NSMCE1|pc|chr16:27268705:27268764:-	0	-
#Deleted in new
chr16	27268705	27268794	ENSG00000169189.16|NSMCE1|pc|chr16:27268705:27268794:-	0	-
#Deleted in new
chr16	27268845	27269156	ENSG00000245888.6|FLJ21408|lncRNA|chr16:27268845:27269156:+	0	+
#Deleted in new
chr16	27268868	27269156	ENSG00000245888.6|FLJ21408|lncRNA|chr16:27268868:27269156:+	0	+
#Partially deleted in new
chr16	27269670	27271976	ENSG00000245888.6|FLJ21408|lncRNA|chr16:27269670:27271976:+	0	+
#Deleted in new
chr16	27281535	27281635	ENSG00000245888.6|FLJ21408|lncRNA|chr16:27281535:27281635:+	0	+
#Deleted in new
chr16	27284635	27284654	ENSG00000245888.6|FLJ21408|lncRNA|chr16:27284635:27284654:+	0	+
#Deleted in new
chr16	27286656	27286744	ENSG00000245888.6|FLJ21408|lncRNA|chr16:27286656:27286744:+	0	+
#Deleted in new
chr16	27286661	27286744	ENSG00000245888.6|FLJ21408|lncRNA|chr16:27286661:27286744:+	0	+
#Deleted in new
chr16	27288799	27288953	ENSG00000245888.6|FLJ21408|lncRNA|chr16:27288799:27288953:+	0	+
#Deleted in new
chr16	27290244	27290468	ENSG00000245888.6|FLJ21408|lncRNA|chr16:27290244:27290468:+	0	+
#Deleted in new
chr16	27290244	27290492	ENSG00000245888.6|FLJ21408|lncRNA|chr16:27290244:27290492:+	0	+
#Deleted in new
chr16	27313386	27314101	ENSG00000274092.1|AC106739.1|lncRNA|chr16:27313386:27314101:-	0	-
#Deleted in new
chr16	27313667	27313817	ENSG00000077238.13|IL4R|pc|chr16:27313667:27313817:+	0	+
#Deleted in new
chr16	27313912	27314020	ENSG00000077238.13|IL4R|pc|chr16:27313912:27314020:+	0	+
#Deleted in new
chr16	27313922	27314231	ENSG00000077238.13|IL4R|pc|chr16:27313922:27314231:+	0	+
#Deleted in new
chr16	27313925	27314020	ENSG00000077238.13|IL4R|pc|chr16:27313925:27314020:+	0	+
#Deleted in new
chr16	27313933	27314020	ENSG00000077238.13|IL4R|pc|chr16:27313933:27314020:+	0	+
#Deleted in new
chr16	27313937	27314020	ENSG00000077238.13|IL4R|pc|chr16:27313937:27314020:+	0	+
#Deleted in new
chr16	27313991	27314020	ENSG00000077238.13|IL4R|pc|chr16:27313991:27314020:+	0	+
#Deleted in new
chr16	27314029	27314058	ENSG00000077238.13|IL4R|pc|chr16:27314029:27314058:+	0	+
#Deleted in new
chr16	27315396	27315566	ENSG00000077238.13|IL4R|pc|chr16:27315396:27315566:+	0	+
#Deleted in new
chr16	27318634	27318767	ENSG00000077238.13|IL4R|pc|chr16:27318634:27318767:+	0	+
#Deleted in new
chr16	27330065	27330198	ENSG00000077238.13|IL4R|pc|chr16:27330065:27330198:+	0	+
#Deleted in new
chr16	27334315	27334417	ENSG00000077238.13|IL4R|pc|chr16:27334315:27334417:+	0	+
#Partially deleted in new
chr16	27341069	27341200	ENSG00000077238.13|IL4R|pc|chr16:27341069:27341200:+	0	+
#Deleted in new
chr16	27345184	27345602	ENSG00000077238.13|IL4R|pc|chr16:27345184:27345602:+	0	+
#Deleted in new
chr16	27354082	27354162	ENSG00000077238.13|IL4R|pc|chr16:27354082:27354162:+	0	+
#Deleted in new
chr16	2737075	2737288	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2737075:2737288:-	0	-
#Deleted in new
chr16	2737090	2737288	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2737090:2737288:-	0	-
#Deleted in new
chr16	2737102	2737288	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2737102:2737288:-	0	-
#Deleted in new
chr16	2737479	2737610	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2737479:2737610:-	0	-
#Deleted in new
chr16	2737479	2740804	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2737479:2740804:-	0	-
#Deleted in new
chr16	2738368	2738500	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2738368:2738500:-	0	-
#Deleted in new
chr16	2738441	2738500	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2738441:2738500:-	0	-
#Deleted in new
chr16	2740957	2741341	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2740957:2741341:-	0	-
#Deleted in new
chr16	27427243	27427361	ENSG00000103522.15|IL21R|pc|chr16:27427243:27427361:+	0	+
#Deleted in new
chr16	2743551	2743719	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2743551:2743719:-	0	-
#Deleted in new
chr16	2744454	2744797	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2744454:2744797:-	0	-
#Deleted in new
chr16	27452742	27452922	ENSG00000259954.1|IL21R-AS1|lncRNA|chr16:27452742:27452922:-	0	-
#Deleted in new
chr16	27453096	27453393	ENSG00000259954.1|IL21R-AS1|lncRNA|chr16:27453096:27453393:-	0	-
#Deleted in new
chr16	27459554	27459613	ENSG00000077235.17|GTF3C1|pc|chr16:27459554:27459613:-	0	-
#Partially deleted in new
chr16	27482510	27482585	ENSG00000077235.17|GTF3C1|pc|chr16:27482510:27482585:-	0	-
#Deleted in new
chr16	2749544	2749659	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2749544:2749659:-	0	-
#Deleted in new
chr16	2749544	2750810	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2749544:2750810:-	0	-
#Deleted in new
chr16	2749785	2750385	ENSG00000205913.6|SRRM2-AS1|lncRNA|chr16:2749785:2750385:-	0	-
#Deleted in new
chr16	27632463	27632603	ENSG00000047578.12|KIAA0556|pc|chr16:27632463:27632603:+	0	+
#Deleted in new
chr16	27643198	27643359	ENSG00000261736.1|AC002551.1|lncRNA|chr16:27643198:27643359:+	0	+
#Deleted in new
chr16	27644232	27644663	ENSG00000261736.1|AC002551.1|lncRNA|chr16:27644232:27644663:+	0	+
#Deleted in new
chr16	27678939	27679079	ENSG00000261329.5|AC016597.1|lncRNA|chr16:27678939:27679079:-	0	-
#Partially deleted in new
chr16	2771413	2771604	ENSG00000103363.14|ELOB|pc|chr16:2771413:2771604:-	0	-
#Partially deleted in new
chr16	2771413	2772102	ENSG00000103363.14|ELOB|pc|chr16:2771413:2772102:-	0	-
#Partially deleted in new
chr16	2771414	2772102	ENSG00000103363.14|ELOB|pc|chr16:2771414:2772102:-	0	-
#Deleted in new
chr16	2772321	2772538	ENSG00000167978.16|SRRM2|pc|chr16:2772321:2772538:+	0	+
#Deleted in new
chr16	27727215	27727873	ENSG00000047578.12|KIAA0556|pc|chr16:27727215:27727873:+	0	+
#Split in new
chr16	2777318	2780568	ENSG00000276791.1|AC092117.1|lncRNA|chr16:2777318:2780568:+	0	+
#Deleted in new
chr16	27850478	27850623	ENSG00000169181.12|GSG1L|pc|chr16:27850478:27850623:-	0	-
#Deleted in new
chr16	27888059	27888157	ENSG00000169181.12|GSG1L|pc|chr16:27888059:27888157:-	0	-
#Duplicated in new
chr16	2804913	2805302	ENSG00000215148.8|PRSS41|pc|chr16:2804913:2805302:+	0	+
#Deleted in new
chr16	28173064	28173122	ENSG00000169180.11|XPO6|pc|chr16:28173064:28173122:-	0	-
#Deleted in new
chr16	28208986	28209055	ENSG00000169180.11|XPO6|pc|chr16:28208986:28209055:-	0	-
#Deleted in new
chr16	28208986	28209122	ENSG00000169180.11|XPO6|pc|chr16:28208986:28209122:-	0	-
#Deleted in new
chr16	2825969	2826304	ENSG00000007038.10|PRSS21|pc|chr16:2825969:2826304:+	0	+
#Partially deleted in new
chr16	28284884	28287067	ENSG00000246465.1|AC138904.1|lncRNA|chr16:28284884:28287067:-	0	-
#Deleted in new
chr16	28342554	28343188	ENSG00000198156.10|NPIPB6|pc|chr16:28342554:28343188:-	0	-
#Deleted in new
chr16	28344547	28344583	ENSG00000198156.10|NPIPB6|pc|chr16:28344547:28344583:-	0	-
#Deleted in new
chr16	28344692	28344753	ENSG00000198156.10|NPIPB6|pc|chr16:28344692:28344753:-	0	-
#Deleted in new
chr16	28348833	28349029	ENSG00000198156.10|NPIPB6|pc|chr16:28348833:28349029:-	0	-
#Deleted in new
chr16	28349141	28349241	ENSG00000198156.10|NPIPB6|pc|chr16:28349141:28349241:-	0	-
#Deleted in new
chr16	28352878	28353061	ENSG00000198156.10|NPIPB6|pc|chr16:28352878:28353061:-	0	-
#Deleted in new
chr16	28356535	28356654	ENSG00000198156.10|NPIPB6|pc|chr16:28356535:28356654:-	0	-
#Deleted in new
chr16	2838375	2839585	ENSG00000162078.11|ZG16B|pc|chr16:2838375:2839585:+	0	+
#Deleted in new
chr16	28454140	28454511	ENSG00000270118.1|AC138894.2|lncRNA|chr16:28454140:28454511:-	0	-
#Deleted in new
chr16	28456370	28457026	ENSG00000261832.6|AC138894.1|pc|chr16:28456370:28457026:-	0	-
#Deleted in new
chr16	28456371	28457026	ENSG00000233232.6|NPIPB7|pc|chr16:28456371:28457026:-	0	-
#Deleted in new
chr16	28456423	28457026	ENSG00000233232.6|NPIPB7|pc|chr16:28456423:28457026:-	0	-
#Deleted in new
chr16	28456700	28457026	ENSG00000261832.6|AC138894.1|pc|chr16:28456700:28457026:-	0	-
#Deleted in new
chr16	28456711	28457026	ENSG00000261832.6|AC138894.1|pc|chr16:28456711:28457026:-	0	-
#Deleted in new
chr16	28456712	28457026	ENSG00000261832.6|AC138894.1|pc|chr16:28456712:28457026:-	0	-
#Deleted in new
chr16	28456718	28457026	ENSG00000261832.6|AC138894.1|pc|chr16:28456718:28457026:-	0	-
#Deleted in new
chr16	28458385	28458421	ENSG00000233232.6|NPIPB7|pc|chr16:28458385:28458421:-	0	-
#Deleted in new
chr16	28458385	28458421	ENSG00000261832.6|AC138894.1|pc|chr16:28458385:28458421:-	0	-
#Deleted in new
chr16	28458385	28458591	ENSG00000261832.6|AC138894.1|pc|chr16:28458385:28458591:-	0	-
#Deleted in new
chr16	28458530	28458591	ENSG00000233232.6|NPIPB7|pc|chr16:28458530:28458591:-	0	-
#Deleted in new
chr16	28458530	28458591	ENSG00000261832.6|AC138894.1|pc|chr16:28458530:28458591:-	0	-
#Deleted in new
chr16	28462673	28462869	ENSG00000233232.6|NPIPB7|pc|chr16:28462673:28462869:-	0	-
#Deleted in new
chr16	28462673	28462869	ENSG00000261832.6|AC138894.1|pc|chr16:28462673:28462869:-	0	-
#Deleted in new
chr16	28462981	28463081	ENSG00000233232.6|NPIPB7|pc|chr16:28462981:28463081:-	0	-
#Deleted in new
chr16	28462981	28463081	ENSG00000261832.6|AC138894.1|pc|chr16:28462981:28463081:-	0	-
#Deleted in new
chr16	28466652	28466902	ENSG00000261832.6|AC138894.1|pc|chr16:28466652:28466902:-	0	-
#Deleted in new
chr16	28466669	28466902	ENSG00000261832.6|AC138894.1|pc|chr16:28466669:28466902:-	0	-
#Deleted in new
chr16	28466673	28466902	ENSG00000261832.6|AC138894.1|pc|chr16:28466673:28466902:-	0	-
#Deleted in new
chr16	28466695	28466902	ENSG00000261832.6|AC138894.1|pc|chr16:28466695:28466902:-	0	-
#Deleted in new
chr16	28466719	28466902	ENSG00000233232.6|NPIPB7|pc|chr16:28466719:28466902:-	0	-
#Deleted in new
chr16	28466719	28466902	ENSG00000261832.6|AC138894.1|pc|chr16:28466719:28466902:-	0	-
#Deleted in new
chr16	28466793	28466902	ENSG00000261832.6|AC138894.1|pc|chr16:28466793:28466902:-	0	-
#Deleted in new
chr16	28466829	28466902	ENSG00000261832.6|AC138894.1|pc|chr16:28466829:28466902:-	0	-
#Deleted in new
chr16	28469687	28469817	ENSG00000261832.6|AC138894.1|pc|chr16:28469687:28469817:-	0	-
#Deleted in new
chr16	28470372	28470460	ENSG00000261832.6|AC138894.1|pc|chr16:28470372:28470460:-	0	-
#Deleted in new
chr16	28470372	28470547	ENSG00000233232.6|NPIPB7|pc|chr16:28470372:28470547:-	0	-
#Deleted in new
chr16	28471088	28471174	ENSG00000261832.6|AC138894.1|pc|chr16:28471088:28471174:-	0	-
#Deleted in new
chr16	28471088	28471175	ENSG00000233232.6|NPIPB7|pc|chr16:28471088:28471175:-	0	-
#Deleted in new
chr16	28474110	28474262	ENSG00000188603.18|CLN3|pc|chr16:28474110:28474262:-	0	-
#Partially deleted in new
chr16	28475350	28477635	ENSG00000188603.18|CLN3|pc|chr16:28475350:28477635:-	0	-
#Deleted in new
chr16	28476250	28476375	ENSG00000261832.6|AC138894.1|pc|chr16:28476250:28476375:-	0	-
#Deleted in new
chr16	28477011	28477128	ENSG00000261832.6|AC138894.1|pc|chr16:28477011:28477128:-	0	-
#Deleted in new
chr16	28479461	28479586	ENSG00000188603.18|CLN3|pc|chr16:28479461:28479586:-	0	-
#Deleted in new
chr16	28479643	28479741	ENSG00000188603.18|CLN3|pc|chr16:28479643:28479741:-	0	-
#Deleted in new
chr16	28479643	28479741	ENSG00000261832.6|AC138894.1|pc|chr16:28479643:28479741:-	0	-
#Deleted in new
chr16	28479643	28479765	ENSG00000188603.18|CLN3|pc|chr16:28479643:28479765:-	0	-
#Deleted in new
chr16	28479643	28479765	ENSG00000261832.6|AC138894.1|pc|chr16:28479643:28479765:-	0	-
#Partially deleted in new
chr16	28484005	28484882	ENSG00000188603.18|CLN3|pc|chr16:28484005:28484882:-	0	-
#Partially deleted in new
chr16	28484005	28484946	ENSG00000188603.18|CLN3|pc|chr16:28484005:28484946:-	0	-
#Deleted in new
chr16	28490318	28490416	ENSG00000188603.18|CLN3|pc|chr16:28490318:28490416:-	0	-
#Deleted in new
chr16	28490961	28491062	ENSG00000188603.18|CLN3|pc|chr16:28490961:28491062:-	0	-
#Deleted in new
chr16	28492710	28492773	ENSG00000188603.18|CLN3|pc|chr16:28492710:28492773:-	0	-
#Deleted in new
chr16	28493625	28493692	ENSG00000188603.18|CLN3|pc|chr16:28493625:28493692:-	0	-
#Deleted in new
chr16	28493785	28493809	ENSG00000188603.18|CLN3|pc|chr16:28493785:28493809:-	0	-
#Partially deleted in new
chr16	28538525	28538654	ENSG00000176046.8|NUPR1|pc|chr16:28538525:28538654:-	0	-
#Deleted in new
chr16	2854405	2854479	ENSG00000005001.9|PRSS22|pc|chr16:2854405:2854479:-	0	-
#Deleted in new
chr16	28588609	28588691	ENSG00000176476.8|SGF29|pc|chr16:28588609:28588691:+	0	+
#Deleted in new
chr16	2859587	2859726	ENSG00000263325.1|AC003965.2|lncRNA|chr16:2859587:2859726:+	0	+
#Partially deleted in new
chr16	28605195	28605933	ENSG00000196502.11|SULT1A1|pc|chr16:28605195:28605933:-	0	-
#Split in new
chr16	28606950	28614279	ENSG00000196502.11|SULT1A1|pc|chr16:28606950:28614279:-	0	-
#Deleted in new
chr16	28648134	28648317	ENSG00000255524.7|NPIPB8|pc|chr16:28648134:28648317:+	0	+
#Deleted in new
chr16	28651956	28652056	ENSG00000255524.7|NPIPB8|pc|chr16:28651956:28652056:+	0	+
#Deleted in new
chr16	28652168	28652364	ENSG00000255524.7|NPIPB8|pc|chr16:28652168:28652364:+	0	+
#Deleted in new
chr16	28652233	28652364	ENSG00000255524.7|NPIPB8|pc|chr16:28652233:28652364:+	0	+
#Deleted in new
chr16	28656462	28656523	ENSG00000255524.7|NPIPB8|pc|chr16:28656462:28656523:+	0	+
#Deleted in new
chr16	28656632	28656668	ENSG00000255524.7|NPIPB8|pc|chr16:28656632:28656668:+	0	+
#Deleted in new
chr16	28656632	28656948	ENSG00000255524.7|NPIPB8|pc|chr16:28656632:28656948:+	0	+
#Deleted in new
chr16	28658027	28658682	ENSG00000255524.7|NPIPB8|pc|chr16:28658027:28658682:+	0	+
#Deleted in new
chr16	2866347	2866856	ENSG00000263280.1|AC003965.1|lncRNA|chr16:2866347:2866856:-	0	-
#Deleted in new
chr16	28688557	28688828	ENSG00000184110.14|EIF3C|pc|chr16:28688557:28688828:+	0	+
#Deleted in new
chr16	28720498	28721032	ENSG00000184110.14|EIF3C|pc|chr16:28720498:28721032:+	0	+
#Partially deleted in new
chr16	28721254	28723323	ENSG00000184110.14|EIF3C|pc|chr16:28721254:28723323:+	0	+
#Deleted in new
chr16	28757997	28758083	ENSG00000196993.8|NPIPB9|pc|chr16:28757997:28758083:+	0	+
#Deleted in new
chr16	28762250	28762433	ENSG00000196993.8|NPIPB9|pc|chr16:28762250:28762433:+	0	+
#Deleted in new
chr16	28766081	28766181	ENSG00000196993.8|NPIPB9|pc|chr16:28766081:28766181:+	0	+
#Deleted in new
chr16	28766293	28766489	ENSG00000196993.8|NPIPB9|pc|chr16:28766293:28766489:+	0	+
#Deleted in new
chr16	28770587	28770648	ENSG00000196993.8|NPIPB9|pc|chr16:28770587:28770648:+	0	+
#Deleted in new
chr16	28770757	28770793	ENSG00000196993.8|NPIPB9|pc|chr16:28770757:28770793:+	0	+
#Deleted in new
chr16	28772152	28772807	ENSG00000196993.8|NPIPB9|pc|chr16:28772152:28772807:+	0	+
#Deleted in new
chr16	28802742	28803012	ENSG00000251417.2|AC145285.2|lncRNA|chr16:28802742:28803012:+	0	+
#Deleted in new
chr16	28816135	28817828	ENSG00000251417.2|AC145285.2|lncRNA|chr16:28816135:28817828:+	0	+
#Deleted in new
chr16	28820569	28820758	ENSG00000260796.1|AC145285.4|lncRNA|chr16:28820569:28820758:-	0	-
#Deleted in new
chr16	28821682	28822033	ENSG00000260796.1|AC145285.4|lncRNA|chr16:28821682:28822033:-	0	-
#Partially deleted in new
chr16	28846688	28846827	ENSG00000178188.14|SH2B1|pc|chr16:28846688:28846827:+	0	+
#Deleted in new
chr16	28861617	28861747	ENSG00000178188.14|SH2B1|pc|chr16:28861617:28861747:+	0	+
#Deleted in new
chr16	28863029	28863166	ENSG00000178188.14|SH2B1|pc|chr16:28863029:28863166:+	0	+
#Deleted in new
chr16	28892314	28892431	ENSG00000196296.13|ATP2A1|pc|chr16:28892314:28892431:+	0	+
#Deleted in new
chr16	28892314	28892659	ENSG00000196296.13|ATP2A1|pc|chr16:28892314:28892659:+	0	+
#Deleted in new
chr16	28916175	28916285	ENSG00000177548.12|RABEP2|pc|chr16:28916175:28916285:-	0	-
#Deleted in new
chr16	28917822	28917929	ENSG00000177548.12|RABEP2|pc|chr16:28917822:28917929:-	0	-
#Deleted in new
chr16	28917836	28917929	ENSG00000177548.12|RABEP2|pc|chr16:28917836:28917929:-	0	-
#Deleted in new
chr16	28921062	28921213	ENSG00000177548.12|RABEP2|pc|chr16:28921062:28921213:-	0	-
#Deleted in new
chr16	2895219	2895320	ENSG00000162076.12|FLYWCH2|pc|chr16:2895219:2895320:+	0	+
#Deleted in new
chr16	28956686	28956762	ENSG00000260853.1|AC109460.2|lncRNA|chr16:28956686:28956762:-	0	-
#Deleted in new
chr16	28956737	28957074	ENSG00000260853.1|AC109460.2|lncRNA|chr16:28956737:28957074:-	0	-
#Deleted in new
chr16	28957601	28957837	ENSG00000260853.1|AC109460.2|lncRNA|chr16:28957601:28957837:-	0	-
#Partially deleted in new
chr16	28966415	28966883	ENSG00000260853.1|AC109460.2|lncRNA|chr16:28966415:28966883:-	0	-
#Partially deleted in new
chr16	28979404	28980687	ENSG00000169682.17|SPNS1|pc|chr16:28979404:28980687:+	0	+
#Deleted in new
chr16	2898754	2898958	ENSG00000162076.12|FLYWCH2|pc|chr16:2898754:2898958:+	0	+
#Partially deleted in new
chr16	28987565	28989589	ENSG00000213658.11|LAT|pc|chr16:28987565:28989589:+	0	+
#Partially deleted in new
chr16	28990410	28990778	ENSG00000261552.1|AC109460.4|lncRNA|chr16:28990410:28990778:-	0	-
#Deleted in new
chr16	2899048	2899365	ENSG00000162076.12|FLYWCH2|pc|chr16:2899048:2899365:+	0	+
#Deleted in new
chr16	2899048	2899382	ENSG00000162076.12|FLYWCH2|pc|chr16:2899048:2899382:+	0	+
#Deleted in new
chr16	2911936	2912154	ENSG00000059122.16|FLYWCH1|pc|chr16:2911936:2912154:+	0	+
#Deleted in new
chr16	2911980	2912154	ENSG00000059122.16|FLYWCH1|pc|chr16:2911980:2912154:+	0	+
#Deleted in new
chr16	2911998	2912154	ENSG00000059122.16|FLYWCH1|pc|chr16:2911998:2912154:+	0	+
#Deleted in new
chr16	2912006	2912154	ENSG00000059122.16|FLYWCH1|pc|chr16:2912006:2912154:+	0	+
#Deleted in new
chr16	2912023	2912154	ENSG00000059122.16|FLYWCH1|pc|chr16:2912023:2912154:+	0	+
#Deleted in new
chr16	2913005	2913250	ENSG00000059122.16|FLYWCH1|pc|chr16:2913005:2913250:+	0	+
#Deleted in new
chr16	2914175	2914289	ENSG00000059122.16|FLYWCH1|pc|chr16:2914175:2914289:+	0	+
#Deleted in new
chr16	2914260	2914289	ENSG00000059122.16|FLYWCH1|pc|chr16:2914260:2914289:+	0	+
#Deleted in new
chr16	2915182	2915232	ENSG00000059122.16|FLYWCH1|pc|chr16:2915182:2915232:+	0	+
#Deleted in new
chr16	2915407	2915476	ENSG00000059122.16|FLYWCH1|pc|chr16:2915407:2915476:+	0	+
#Deleted in new
chr16	29204632	29205855	ENSG00000279106.1|AC009093.7|lncRNA|chr16:29204632:29205855:+	0	+
#Deleted in new
chr16	29212058	29214137	ENSG00000260517.3|AC009093.2|lncRNA|chr16:29212058:29214137:+	0	+
#Deleted in new
chr16	29212769	29212906	ENSG00000260517.3|AC009093.2|lncRNA|chr16:29212769:29212906:+	0	+
#Deleted in new
chr16	29216436	29216706	ENSG00000260517.3|AC009093.2|lncRNA|chr16:29216436:29216706:+	0	+
#Deleted in new
chr16	29217169	29217664	ENSG00000259807.1|AC009093.1|lncRNA|chr16:29217169:29217664:-	0	-
#Duplicated in new
chr16	29218427	29220031	ENSG00000259807.1|AC009093.1|lncRNA|chr16:29218427:29220031:-	0	-
#Deleted in new
chr16	2922338	2922359	ENSG00000059122.16|FLYWCH1|pc|chr16:2922338:2922359:+	0	+
#Partially deleted in new
chr16	2922338	2922651	ENSG00000059122.16|FLYWCH1|pc|chr16:2922338:2922651:+	0	+
#Deleted in new
chr16	29225593	29225847	ENSG00000273582.1|AC009093.5|lncRNA|chr16:29225593:29225847:-	0	-
#Deleted in new
chr16	29226243	29226348	ENSG00000273582.1|AC009093.5|lncRNA|chr16:29226243:29226348:-	0	-
#Deleted in new
chr16	29262272	29262683	ENSG00000260953.1|AC009093.4|lncRNA|chr16:29262272:29262683:-	0	-
#Partially deleted in new
chr16	29264329	29264479	ENSG00000260953.1|AC009093.4|lncRNA|chr16:29264329:29264479:-	0	-
#Deleted in new
chr16	29291219	29291876	ENSG00000198106.8|AC025279.1|lncRNA|chr16:29291219:29291876:+	0	+
#Deleted in new
chr16	29302286	29302388	ENSG00000198106.8|AC025279.1|lncRNA|chr16:29302286:29302388:+	0	+
#Deleted in new
chr16	29302286	29302388	ENSG00000284685.1|AC009093.10|lncRNA|chr16:29302286:29302388:+	0	+
#Deleted in new
chr16	2934614	2934667	ENSG00000059122.16|FLYWCH1|pc|chr16:2934614:2934667:+	0	+
#Deleted in new
chr16	2934744	2934800	ENSG00000059122.16|FLYWCH1|pc|chr16:2934744:2934800:+	0	+
#Deleted in new
chr16	2934880	2936877	ENSG00000059122.16|FLYWCH1|pc|chr16:2934880:2936877:+	0	+
#Deleted in new
chr16	2936331	2936425	ENSG00000059122.16|FLYWCH1|pc|chr16:2936331:2936425:+	0	+
#Deleted in new
chr16	2936672	2936877	ENSG00000059122.16|FLYWCH1|pc|chr16:2936672:2936877:+	0	+
#Deleted in new
chr16	29369534	29372110	ENSG00000198106.8|AC025279.1|lncRNA|chr16:29369534:29372110:+	0	+
#Deleted in new
chr16	29381353	29384289	ENSG00000254206.5|NPIPB11|pc|chr16:29381353:29384289:-	0	-
#Deleted in new
chr16	29385033	29385685	ENSG00000254206.5|NPIPB11|pc|chr16:29385033:29385685:-	0	-
#Deleted in new
chr16	29385649	29385685	ENSG00000254206.5|NPIPB11|pc|chr16:29385649:29385685:-	0	-
#Deleted in new
chr16	29385794	29385855	ENSG00000254206.5|NPIPB11|pc|chr16:29385794:29385855:-	0	-
#Deleted in new
chr16	29389940	29390085	ENSG00000254206.5|NPIPB11|pc|chr16:29389940:29390085:-	0	-
#Deleted in new
chr16	29389940	29390136	ENSG00000254206.5|NPIPB11|pc|chr16:29389940:29390136:-	0	-
#Deleted in new
chr16	29390248	29390348	ENSG00000254206.5|NPIPB11|pc|chr16:29390248:29390348:-	0	-
#Deleted in new
chr16	29393947	29394076	ENSG00000254206.5|NPIPB11|pc|chr16:29393947:29394076:-	0	-
#Deleted in new
chr16	2939713	2939980	ENSG00000262482.1|AC004034.1|lncRNA|chr16:2939713:2939980:-	0	-
#Deleted in new
chr16	29397567	29397696	ENSG00000254206.5|NPIPB11|pc|chr16:29397567:29397696:-	0	-
#Deleted in new
chr16	2940031	2940092	ENSG00000059122.16|FLYWCH1|pc|chr16:2940031:2940092:+	0	+
#Deleted in new
chr16	2940031	2940163	ENSG00000059122.16|FLYWCH1|pc|chr16:2940031:2940163:+	0	+
#Deleted in new
chr16	2943326	2943484	ENSG00000262482.1|AC004034.1|lncRNA|chr16:2943326:2943484:-	0	-
#Deleted in new
chr16	2943398	2943589	ENSG00000059122.16|FLYWCH1|pc|chr16:2943398:2943589:+	0	+
#Partially deleted in new
chr16	29456447	29457759	ENSG00000260280.5|SLX1B-SULT1A4|lncRNA|chr16:29456447:29457759:+	0	+
#Deleted in new
chr16	29459888	29459985	ENSG00000213648.10|SULT1A4|pc|chr16:29459888:29459985:+	0	+
#Deleted in new
chr16	29462692	29462785	ENSG00000213648.10|SULT1A4|pc|chr16:29462692:29462785:+	0	+
#Deleted in new
chr16	29466575	29466695	ENSG00000258150.5|AC133555.3|pc|chr16:29466575:29466695:-	0	-
#Partially deleted in new
chr16	29466575	29467551	ENSG00000258150.5|AC133555.3|pc|chr16:29466575:29467551:-	0	-
#Deleted in new
chr16	29467160	29467578	ENSG00000279228.1|AC133555.5|lncRNA|chr16:29467160:29467578:+	0	+
#Deleted in new
chr16	29467681	29467833	ENSG00000258150.5|AC133555.3|pc|chr16:29467681:29467833:-	0	-
#Deleted in new
chr16	29483641	29484386	ENSG00000169203.16|NPIPB12|pc|chr16:29483641:29484386:-	0	-
#Deleted in new
chr16	29484689	29485833	ENSG00000169203.16|NPIPB12|pc|chr16:29484689:29485833:-	0	-
#Deleted in new
chr16	29485262	29485859	ENSG00000169203.16|NPIPB12|pc|chr16:29485262:29485859:-	0	-
#Deleted in new
chr16	29485632	29485833	ENSG00000169203.16|NPIPB12|pc|chr16:29485632:29485833:-	0	-
#Deleted in new
chr16	29485712	29485833	ENSG00000169203.16|NPIPB12|pc|chr16:29485712:29485833:-	0	-
#Deleted in new
chr16	29485731	29485833	ENSG00000169203.16|NPIPB12|pc|chr16:29485731:29485833:-	0	-
#Deleted in new
chr16	29486577	29487229	ENSG00000169203.16|NPIPB12|pc|chr16:29486577:29487229:-	0	-
#Deleted in new
chr16	2948687	2948713	ENSG00000059122.16|FLYWCH1|pc|chr16:2948687:2948713:+	0	+
#Deleted in new
chr16	2948687	2949809	ENSG00000059122.16|FLYWCH1|pc|chr16:2948687:2949809:+	0	+
#Deleted in new
chr16	2948687	2949811	ENSG00000059122.16|FLYWCH1|pc|chr16:2948687:2949811:+	0	+
#Deleted in new
chr16	2948687	2949813	ENSG00000059122.16|FLYWCH1|pc|chr16:2948687:2949813:+	0	+
#Deleted in new
chr16	2948687	2951199	ENSG00000059122.16|FLYWCH1|pc|chr16:2948687:2951199:+	0	+
#Deleted in new
chr16	2948687	2951208	ENSG00000059122.16|FLYWCH1|pc|chr16:2948687:2951208:+	0	+
#Deleted in new
chr16	29487193	29487229	ENSG00000169203.16|NPIPB12|pc|chr16:29487193:29487229:-	0	-
#Deleted in new
chr16	29487338	29487399	ENSG00000169203.16|NPIPB12|pc|chr16:29487338:29487399:-	0	-
#Deleted in new
chr16	29488022	29488091	ENSG00000169203.16|NPIPB12|pc|chr16:29488022:29488091:-	0	-
#Deleted in new
chr16	29488408	29488510	ENSG00000169203.16|NPIPB12|pc|chr16:29488408:29488510:-	0	-
#Deleted in new
chr16	2948843	2949460	ENSG00000059122.16|FLYWCH1|pc|chr16:2948843:2949460:+	0	+
#Deleted in new
chr16	29491466	29491611	ENSG00000169203.16|NPIPB12|pc|chr16:29491466:29491611:-	0	-
#Deleted in new
chr16	29491466	29491662	ENSG00000169203.16|NPIPB12|pc|chr16:29491466:29491662:-	0	-
#Deleted in new
chr16	29491466	29491697	ENSG00000169203.16|NPIPB12|pc|chr16:29491466:29491697:-	0	-
#Deleted in new
chr16	29491502	29491662	ENSG00000169203.16|NPIPB12|pc|chr16:29491502:29491662:-	0	-
#Deleted in new
chr16	29491572	29491662	ENSG00000169203.16|NPIPB12|pc|chr16:29491572:29491662:-	0	-
#Deleted in new
chr16	29491774	29491874	ENSG00000169203.16|NPIPB12|pc|chr16:29491774:29491874:-	0	-
#Deleted in new
chr16	29491824	29491874	ENSG00000169203.16|NPIPB12|pc|chr16:29491824:29491874:-	0	-
#Deleted in new
chr16	29495478	29495544	ENSG00000169203.16|NPIPB12|pc|chr16:29495478:29495544:-	0	-
#Deleted in new
chr16	29495478	29495607	ENSG00000169203.16|NPIPB12|pc|chr16:29495478:29495607:-	0	-
#Deleted in new
chr16	29495478	29495899	ENSG00000169203.16|NPIPB12|pc|chr16:29495478:29495899:-	0	-
#Deleted in new
chr16	29499323	29499452	ENSG00000169203.16|NPIPB12|pc|chr16:29499323:29499452:-	0	-
#Deleted in new
chr16	29499997	29500083	ENSG00000169203.16|NPIPB12|pc|chr16:29499997:29500083:-	0	-
#Deleted in new
chr16	29499997	29500274	ENSG00000169203.16|NPIPB12|pc|chr16:29499997:29500274:-	0	-
#Deleted in new
chr16	29500142	29500274	ENSG00000169203.16|NPIPB12|pc|chr16:29500142:29500274:-	0	-
#Partially deleted in new
chr16	29505793	29505999	ENSG00000169203.16|NPIPB12|pc|chr16:29505793:29505999:-	0	-
#Deleted in new
chr16	29668441	29670518	ENSG00000197471.11|SPN|pc|chr16:29668441:29670518:+	0	+
#Deleted in new
chr16	29670472	29670876	ENSG00000197471.11|SPN|pc|chr16:29670472:29670876:+	0	+
#Partially deleted in new
chr16	2968352	2968515	ENSG00000127564.16|PKMYT1|pc|chr16:2968352:2968515:-	0	-
#Partially deleted in new
chr16	29745246	29745385	ENSG00000260719.1|AC009133.3|lncRNA|chr16:29745246:29745385:+	0	+
#Deleted in new
chr16	29746782	29748299	ENSG00000260719.1|AC009133.3|lncRNA|chr16:29746782:29748299:+	0	+
#Partially deleted in new
chr16	29780103	29782973	ENSG00000174992.7|ZG16|pc|chr16:29780103:29782973:+	0	+
#Deleted in new
chr16	29792465	29792514	ENSG00000079616.12|KIF22|pc|chr16:29792465:29792514:+	0	+
#Deleted in new
chr16	2981174	2981591	ENSG00000274367.1|AC004233.4|lncRNA|chr16:2981174:2981591:-	0	-
#Partially deleted in new
chr16	29817982	29818544	ENSG00000238045.9|AC009133.1|lncRNA|chr16:29817982:29818544:-	0	-
#Deleted in new
chr16	29831643	29831769	ENSG00000013364.18|MVP|pc|chr16:29831643:29831769:+	0	+
#Deleted in new
chr16	29913143	29915337	ENSG00000279789.1|AC120114.4|lncRNA|chr16:29913143:29915337:-	0	-
#Deleted in new
chr16	29919500	29919633	ENSG00000174943.9|KCTD13|pc|chr16:29919500:29919633:-	0	-
#Deleted in new
chr16	29919530	29919632	ENSG00000174939.10|ASPHD1|pc|chr16:29919530:29919632:+	0	+
#Deleted in new
chr16	29919530	29919864	ENSG00000174939.10|ASPHD1|pc|chr16:29919530:29919864:+	0	+
#Deleted in new
chr16	29928267	29928933	ENSG00000247735.2|AC120114.1|lncRNA|chr16:29928267:29928933:+	0	+
#Deleted in new
chr16	29999269	29999568	ENSG00000169592.14|INO80E|pc|chr16:29999269:29999568:+	0	+
#Deleted in new
chr16	30013466	30013596	ENSG00000149927.17|DOC2A|pc|chr16:30013466:30013596:-	0	-
#Deleted in new
chr16	30014969	30015097	ENSG00000149927.17|DOC2A|pc|chr16:30014969:30015097:-	0	-
#Deleted in new
chr16	30015206	30015262	ENSG00000149927.17|DOC2A|pc|chr16:30015206:30015262:-	0	-
#Deleted in new
chr16	30018641	30018903	ENSG00000149927.17|DOC2A|pc|chr16:30018641:30018903:-	0	-
#Partially deleted in new
chr16	30022993	30023270	ENSG00000149927.17|DOC2A|pc|chr16:30022993:30023270:-	0	-
#Deleted in new
chr16	3003430	3003797	ENSG00000262362.1|AC004233.1|lncRNA|chr16:3003430:3003797:-	0	-
#Partially deleted in new
chr16	30052773	30052923	ENSG00000149926.13|FAM57B|pc|chr16:30052773:30052923:-	0	-
#Deleted in new
chr16	30058940	30059053	ENSG00000149925.17|ALDOA|pc|chr16:30058940:30059053:+	0	+
#Deleted in new
chr16	30068207	30068252	ENSG00000149925.17|ALDOA|pc|chr16:30068207:30068252:+	0	+
#Partially deleted in new
chr16	30081258	30081689	ENSG00000149923.13|PPP4C|pc|chr16:30081258:30081689:+	0	+
#Deleted in new
chr16	30103456	30104116	ENSG00000250616.2|AC012645.1|lncRNA|chr16:30103456:30104116:+	0	+
#Partially deleted in new
chr16	30107674	30108176	ENSG00000261367.1|AC012645.2|lncRNA|chr16:30107674:30108176:+	0	+
#Deleted in new
chr16	30115594	30115645	ENSG00000102882.11|MAPK3|pc|chr16:30115594:30115645:-	0	-
#Deleted in new
chr16	30115594	30115999	ENSG00000102882.11|MAPK3|pc|chr16:30115594:30115999:-	0	-
#Deleted in new
chr16	30123475	30123506	ENSG00000102882.11|MAPK3|pc|chr16:30123475:30123506:-	0	-
#Partially deleted in new
chr1	63016661	63016745	ENSG00000229537.6|LINC01739|lncRNA|chr1:63016661:63016745:-	0	-
#Deleted in new
chr1	63018033	63018158	ENSG00000229537.6|LINC01739|lncRNA|chr1:63018033:63018158:-	0	-
#Deleted in new
chr16	3018444	3018536	ENSG00000006327.13|TNFRSF12A|pc|chr16:3018444:3018536:+	0	+
#Partially deleted in new
chr16	30195789	30197101	ENSG00000213599.10|SLX1A-SULT1A3|lncRNA|chr16:30195789:30197101:+	0	+
#Deleted in new
chr16	30199227	30199327	ENSG00000261052.5|SULT1A3|pc|chr16:30199227:30199327:+	0	+
#Deleted in new
chr16	30199230	30199327	ENSG00000261052.5|SULT1A3|pc|chr16:30199230:30199327:+	0	+
#Deleted in new
chr16	30199859	30199903	ENSG00000261052.5|SULT1A3|pc|chr16:30199859:30199903:+	0	+
#Deleted in new
chr16	3019999	3020071	ENSG00000184697.6|CLDN6|pc|chr16:3019999:3020071:-	0	-
#Deleted in new
chr16	30202037	30202130	ENSG00000261052.5|SULT1A3|pc|chr16:30202037:30202130:+	0	+
#Deleted in new
chr16	30205924	30206044	ENSG00000258130.7|AC106782.1|pc|chr16:30205924:30206044:-	0	-
#Partially deleted in new
chr16	30205924	30206900	ENSG00000258130.7|AC106782.1|pc|chr16:30205924:30206900:-	0	-
#Deleted in new
chr16	30206509	30206927	ENSG00000278887.1|AC106782.7|lncRNA|chr16:30206509:30206927:+	0	+
#Deleted in new
chr16	30206875	30206900	ENSG00000258130.7|AC106782.1|pc|chr16:30206875:30206900:-	0	-
#Deleted in new
chr16	30207030	30207182	ENSG00000258130.7|AC106782.1|pc|chr16:30207030:30207182:-	0	-
#Deleted in new
chr16	30208527	30209071	ENSG00000258130.7|AC106782.1|pc|chr16:30208527:30209071:-	0	-
#Deleted in new
chr16	30222936	30225803	ENSG00000198064.13|NPIPB13|pc|chr16:30222936:30225803:-	0	-
#Deleted in new
chr16	30222981	30223474	ENSG00000198064.13|NPIPB13|pc|chr16:30222981:30223474:-	0	-
#Deleted in new
chr16	30224980	30225829	ENSG00000198064.13|NPIPB13|pc|chr16:30224980:30225829:-	0	-
#Deleted in new
chr16	30225602	30225803	ENSG00000198064.13|NPIPB13|pc|chr16:30225602:30225803:-	0	-
#Deleted in new
chr16	30226547	30227199	ENSG00000198064.13|NPIPB13|pc|chr16:30226547:30227199:-	0	-
#Deleted in new
chr16	30227163	30227199	ENSG00000198064.13|NPIPB13|pc|chr16:30227163:30227199:-	0	-
#Deleted in new
chr16	30227308	30227369	ENSG00000198064.13|NPIPB13|pc|chr16:30227308:30227369:-	0	-
#Deleted in new
chr16	30228378	30228480	ENSG00000198064.13|NPIPB13|pc|chr16:30228378:30228480:-	0	-
#Deleted in new
chr16	30231439	30231584	ENSG00000198064.13|NPIPB13|pc|chr16:30231439:30231584:-	0	-
#Deleted in new
chr16	30231439	30231635	ENSG00000198064.13|NPIPB13|pc|chr16:30231439:30231635:-	0	-
#Deleted in new
chr16	30231439	30231670	ENSG00000198064.13|NPIPB13|pc|chr16:30231439:30231670:-	0	-
#Deleted in new
chr16	30231747	30231847	ENSG00000198064.13|NPIPB13|pc|chr16:30231747:30231847:-	0	-
#Deleted in new
chr16	30235447	30235579	ENSG00000198064.13|NPIPB13|pc|chr16:30235447:30235579:-	0	-
#Deleted in new
chr16	30235450	30235516	ENSG00000198064.13|NPIPB13|pc|chr16:30235450:30235516:-	0	-
#Deleted in new
chr16	30235450	30235579	ENSG00000198064.13|NPIPB13|pc|chr16:30235450:30235579:-	0	-
#Deleted in new
chr16	30235498	30235579	ENSG00000198064.13|NPIPB13|pc|chr16:30235498:30235579:-	0	-
#Deleted in new
chr16	30235519	30235579	ENSG00000198064.13|NPIPB13|pc|chr16:30235519:30235579:-	0	-
#Deleted in new
chr16	30239291	30239420	ENSG00000198064.13|NPIPB13|pc|chr16:30239291:30239420:-	0	-
#Deleted in new
chr16	30239965	30240051	ENSG00000198064.13|NPIPB13|pc|chr16:30239965:30240051:-	0	-
#Deleted in new
chr16	30239965	30240242	ENSG00000198064.13|NPIPB13|pc|chr16:30239965:30240242:-	0	-
#Deleted in new
chr16	30245853	30245877	ENSG00000198064.13|NPIPB13|pc|chr16:30245853:30245877:-	0	-
#Deleted in new
chr1	63025403	63025658	ENSG00000227485.1|AL162400.1|lncRNA|chr1:63025403:63025658:+	0	+
#Deleted in new
chr16	30254309	30254510	ENSG00000198064.13|NPIPB13|pc|chr16:30254309:30254510:-	0	-
#Deleted in new
chr16	3032480	3032551	ENSG00000205890.3|AC108134.1|lncRNA|chr16:3032480:3032551:+	0	+
#Deleted in new
chr16	3032670	3032742	ENSG00000205890.3|AC108134.1|lncRNA|chr16:3032670:3032742:+	0	+
#Partially deleted in new
chr16	3037278	3037395	ENSG00000205890.3|AC108134.1|lncRNA|chr16:3037278:3037395:+	0	+
#Deleted in new
chr16	30372877	30373016	ENSG00000180209.11|MYLPF|pc|chr16:30372877:30373016:+	0	+
#Deleted in new
chr16	3037629	3037706	ENSG00000205890.3|AC108134.1|lncRNA|chr16:3037629:3037706:+	0	+
#Partially deleted in new
chr16	3037834	3038012	ENSG00000205890.3|AC108134.1|lncRNA|chr16:3037834:3038012:+	0	+
#Deleted in new
chr16	30474560	30474607	ENSG00000005844.17|ITGAL|pc|chr16:30474560:30474607:+	0	+
#Deleted in new
chr16	30477179	30477374	ENSG00000261346.1|AC116348.3|lncRNA|chr16:30477179:30477374:-	0	-
#Deleted in new
chr16	30481220	30481346	ENSG00000260487.1|AC116348.1|lncRNA|chr16:30481220:30481346:-	0	-
#Deleted in new
chr16	30509358	30509443	ENSG00000005844.17|ITGAL|pc|chr16:30509358:30509443:+	0	+
#Partially deleted in new
chr16	30534751	30535480	ENSG00000235560.3|AC002310.1|lncRNA|chr16:30534751:30535480:+	0	+
#Deleted in new
chr16	30535110	30535480	ENSG00000235560.3|AC002310.1|lncRNA|chr16:30535110:30535480:+	0	+
#Deleted in new
chr16	3053579	3053622	ENSG00000261971.6|MMP25-AS1|lncRNA|chr16:3053579:3053622:-	0	-
#Deleted in new
chr16	30535817	30536199	ENSG00000235560.3|AC002310.1|lncRNA|chr16:30535817:30536199:+	0	+
#Deleted in new
chr16	3053587	3053619	ENSG00000261971.6|MMP25-AS1|lncRNA|chr16:3053587:3053619:-	0	-
#Deleted in new
chr16	30573739	30573891	ENSG00000197162.9|ZNF785|pc|chr16:30573739:30573891:-	0	-
#Deleted in new
chr16	30578360	30579847	ENSG00000197162.9|ZNF785|pc|chr16:30578360:30579847:-	0	-
#Deleted in new
chr16	30579794	30579847	ENSG00000197162.9|ZNF785|pc|chr16:30579794:30579847:-	0	-
#Split in new
chr16	30580655	30583443	ENSG00000197162.9|ZNF785|pc|chr16:30580655:30583443:-	0	-
#Deleted in new
chr16	30581723	30582148	ENSG00000239791.1|AC002310.2|lncRNA|chr16:30581723:30582148:+	0	+
#Duplicated in new
chr16	30582510	30582804	ENSG00000197162.9|ZNF785|pc|chr16:30582510:30582804:-	0	-
#Duplicated in new
chr16	30582529	30582892	ENSG00000239791.1|AC002310.2|lncRNA|chr16:30582529:30582892:+	0	+
#Deleted in new
chr16	30585906	30586094	ENSG00000260167.1|AC093249.2|lncRNA|chr16:30585906:30586094:+	0	+
#Partially deleted in new
chr16	3058826	3060726	ENSG00000008516.16|MMP25|pc|chr16:3058826:3060726:+	0	+
#Partially deleted in new
chr16	3058995	3059363	ENSG00000261971.6|MMP25-AS1|lncRNA|chr16:3058995:3059363:-	0	-
#Partially deleted in new
chr16	3058995	3059370	ENSG00000261971.6|MMP25-AS1|lncRNA|chr16:3058995:3059370:-	0	-
#Deleted in new
chr16	30608299	30608593	ENSG00000260167.1|AC093249.2|lncRNA|chr16:30608299:30608593:+	0	+
#Deleted in new
chr16	30610587	30610782	ENSG00000156853.12|ZNF689|pc|chr16:30610587:30610782:-	0	-
#Deleted in new
chr16	30623739	30623948	ENSG00000156853.12|ZNF689|pc|chr16:30623739:30623948:-	0	-
#Deleted in new
chr16	30623739	30624012	ENSG00000156853.12|ZNF689|pc|chr16:30623739:30624012:-	0	-
#Deleted in new
chr16	3065296	3065494	ENSG00000008517.16|IL32|pc|chr16:3065296:3065494:+	0	+
#Deleted in new
chr16	3065311	3065494	ENSG00000008517.16|IL32|pc|chr16:3065311:3065494:+	0	+
#Deleted in new
chr16	3065321	3065494	ENSG00000008517.16|IL32|pc|chr16:3065321:3065494:+	0	+
#Deleted in new
chr16	3065354	3065826	ENSG00000008517.16|IL32|pc|chr16:3065354:3065826:+	0	+
#Deleted in new
chr16	3065357	3065494	ENSG00000008517.16|IL32|pc|chr16:3065357:3065494:+	0	+
#Deleted in new
chr16	3065368	3065494	ENSG00000008517.16|IL32|pc|chr16:3065368:3065494:+	0	+
#Deleted in new
chr16	3065368	3065826	ENSG00000008517.16|IL32|pc|chr16:3065368:3065826:+	0	+
#Deleted in new
chr16	3065376	3065494	ENSG00000008517.16|IL32|pc|chr16:3065376:3065494:+	0	+
#Deleted in new
chr16	3065379	3065494	ENSG00000008517.16|IL32|pc|chr16:3065379:3065494:+	0	+
#Deleted in new
chr16	3065383	3065687	ENSG00000008517.16|IL32|pc|chr16:3065383:3065687:+	0	+
#Deleted in new
chr16	3065391	3065494	ENSG00000008517.16|IL32|pc|chr16:3065391:3065494:+	0	+
#Deleted in new
chr16	3065403	3065494	ENSG00000008517.16|IL32|pc|chr16:3065403:3065494:+	0	+
#Deleted in new
chr16	3065609	3065655	ENSG00000008517.16|IL32|pc|chr16:3065609:3065655:+	0	+
#Deleted in new
chr16	3065609	3065710	ENSG00000008517.16|IL32|pc|chr16:3065609:3065710:+	0	+
#Deleted in new
chr16	3065613	3065655	ENSG00000008517.16|IL32|pc|chr16:3065613:3065655:+	0	+
#Deleted in new
chr16	3065620	3065687	ENSG00000008517.16|IL32|pc|chr16:3065620:3065687:+	0	+
#Deleted in new
chr16	3065630	3065655	ENSG00000008517.16|IL32|pc|chr16:3065630:3065655:+	0	+
#Deleted in new
chr16	3065630	3065687	ENSG00000008517.16|IL32|pc|chr16:3065630:3065687:+	0	+
#Deleted in new
chr16	3065638	3065687	ENSG00000008517.16|IL32|pc|chr16:3065638:3065687:+	0	+
#Deleted in new
chr16	3065639	3065687	ENSG00000008517.16|IL32|pc|chr16:3065639:3065687:+	0	+
#Deleted in new
chr16	3065639	3065826	ENSG00000008517.16|IL32|pc|chr16:3065639:3065826:+	0	+
#Deleted in new
chr16	3065640	3065710	ENSG00000008517.16|IL32|pc|chr16:3065640:3065710:+	0	+
#Deleted in new
chr16	3065641	3065687	ENSG00000008517.16|IL32|pc|chr16:3065641:3065687:+	0	+
#Deleted in new
chr16	3065652	3065687	ENSG00000008517.16|IL32|pc|chr16:3065652:3065687:+	0	+
#Deleted in new
chr16	3065653	3065687	ENSG00000008517.16|IL32|pc|chr16:3065653:3065687:+	0	+
#Deleted in new
chr16	3065661	3065687	ENSG00000008517.16|IL32|pc|chr16:3065661:3065687:+	0	+
#Deleted in new
chr16	3065661	3065826	ENSG00000008517.16|IL32|pc|chr16:3065661:3065826:+	0	+
#Deleted in new
chr16	3065662	3065710	ENSG00000008517.16|IL32|pc|chr16:3065662:3065710:+	0	+
#Deleted in new
chr16	3065676	3065710	ENSG00000008517.16|IL32|pc|chr16:3065676:3065710:+	0	+
#Deleted in new
chr16	3065711	3065826	ENSG00000008517.16|IL32|pc|chr16:3065711:3065826:+	0	+
#Deleted in new
chr16	3065780	3065826	ENSG00000008517.16|IL32|pc|chr16:3065780:3065826:+	0	+
#Deleted in new
chr16	3065783	3065826	ENSG00000008517.16|IL32|pc|chr16:3065783:3065826:+	0	+
#Deleted in new
chr16	3065811	3065826	ENSG00000008517.16|IL32|pc|chr16:3065811:3065826:+	0	+
#Partially deleted in new
chr16	30661977	30662468	ENSG00000156860.15|FBRS|pc|chr16:30661977:30662468:+	0	+
#Deleted in new
chr16	3067376	3067415	ENSG00000008517.16|IL32|pc|chr16:3067376:3067415:+	0	+
#Deleted in new
chr16	3067376	3067613	ENSG00000008517.16|IL32|pc|chr16:3067376:3067613:+	0	+
#Deleted in new
chr16	3067376	3067834	ENSG00000008517.16|IL32|pc|chr16:3067376:3067834:+	0	+
#Deleted in new
chr16	3067376	3067888	ENSG00000008517.16|IL32|pc|chr16:3067376:3067888:+	0	+
#Deleted in new
chr16	3067376	3068665	ENSG00000008517.16|IL32|pc|chr16:3067376:3068665:+	0	+
#Deleted in new
chr16	3067442	3067613	ENSG00000008517.16|IL32|pc|chr16:3067442:3067613:+	0	+
#Deleted in new
chr16	3067553	3067613	ENSG00000008517.16|IL32|pc|chr16:3067553:3067613:+	0	+
#Deleted in new
chr16	3067803	3068010	ENSG00000008517.16|IL32|pc|chr16:3067803:3068010:+	0	+
#Deleted in new
chr16	3067983	3068010	ENSG00000008517.16|IL32|pc|chr16:3067983:3068010:+	0	+
#Deleted in new
chr16	3068117	3068239	ENSG00000008517.16|IL32|pc|chr16:3068117:3068239:+	0	+
#Deleted in new
chr16	3068179	3068239	ENSG00000008517.16|IL32|pc|chr16:3068179:3068239:+	0	+
#Deleted in new
chr16	3068989	3069109	ENSG00000008517.16|IL32|pc|chr16:3068989:3069109:+	0	+
#Deleted in new
chr16	3068989	3069269	ENSG00000008517.16|IL32|pc|chr16:3068989:3069269:+	0	+
#Deleted in new
chr16	3068989	3069326	ENSG00000008517.16|IL32|pc|chr16:3068989:3069326:+	0	+
#Deleted in new
chr16	3068989	3069355	ENSG00000008517.16|IL32|pc|chr16:3068989:3069355:+	0	+
#Deleted in new
chr16	3068989	3069368	ENSG00000008517.16|IL32|pc|chr16:3068989:3069368:+	0	+
#Deleted in new
chr16	3068989	3069375	ENSG00000008517.16|IL32|pc|chr16:3068989:3069375:+	0	+
#Deleted in new
chr16	3068989	3069376	ENSG00000008517.16|IL32|pc|chr16:3068989:3069376:+	0	+
#Deleted in new
chr16	3068989	3069396	ENSG00000008517.16|IL32|pc|chr16:3068989:3069396:+	0	+
#Deleted in new
chr16	3068989	3069409	ENSG00000008517.16|IL32|pc|chr16:3068989:3069409:+	0	+
#Deleted in new
chr16	3068989	3069411	ENSG00000008517.16|IL32|pc|chr16:3068989:3069411:+	0	+
#Deleted in new
chr16	3068989	3069440	ENSG00000008517.16|IL32|pc|chr16:3068989:3069440:+	0	+
#Deleted in new
chr16	3068989	3069514	ENSG00000008517.16|IL32|pc|chr16:3068989:3069514:+	0	+
#Deleted in new
chr16	3068989	3069532	ENSG00000008517.16|IL32|pc|chr16:3068989:3069532:+	0	+
#Deleted in new
chr16	3068989	3069543	ENSG00000008517.16|IL32|pc|chr16:3068989:3069543:+	0	+
#Deleted in new
chr16	3068989	3069548	ENSG00000008517.16|IL32|pc|chr16:3068989:3069548:+	0	+
#Deleted in new
chr16	3068989	3069551	ENSG00000008517.16|IL32|pc|chr16:3068989:3069551:+	0	+
#Deleted in new
chr16	3068989	3069552	ENSG00000008517.16|IL32|pc|chr16:3068989:3069552:+	0	+
#Deleted in new
chr16	3068989	3069640	ENSG00000008517.16|IL32|pc|chr16:3068989:3069640:+	0	+
#Deleted in new
chr16	3068989	3069667	ENSG00000008517.16|IL32|pc|chr16:3068989:3069667:+	0	+
#Deleted in new
chr16	3068989	3069728	ENSG00000008517.16|IL32|pc|chr16:3068989:3069728:+	0	+
#Deleted in new
chr16	3068989	3069819	ENSG00000008517.16|IL32|pc|chr16:3068989:3069819:+	0	+
#Deleted in new
chr16	3069280	3069412	ENSG00000008517.16|IL32|pc|chr16:3069280:3069412:+	0	+
#Deleted in new
chr16	3069280	3069546	ENSG00000008517.16|IL32|pc|chr16:3069280:3069546:+	0	+
#Deleted in new
chr16	3069280	3069547	ENSG00000008517.16|IL32|pc|chr16:3069280:3069547:+	0	+
#Deleted in new
chr16	3069280	3069551	ENSG00000008517.16|IL32|pc|chr16:3069280:3069551:+	0	+
#Partially deleted in new
chr16	30754874	30755265	ENSG00000156873.15|PHKG2|pc|chr16:30754874:30755265:+	0	+
#Deleted in new
chr16	3076910	3077443	ENSG00000262370.5|AC108134.3|lncRNA|chr16:3076910:3077443:-	0	-
#Deleted in new
chr16	3078230	3078464	ENSG00000262370.5|AC108134.3|lncRNA|chr16:3078230:3078464:-	0	-
#Deleted in new
chr16	3078230	3078690	ENSG00000262370.5|AC108134.3|lncRNA|chr16:3078230:3078690:-	0	-
#Deleted in new
chr16	3078319	3078676	ENSG00000262370.5|AC108134.3|lncRNA|chr16:3078319:3078676:-	0	-
#Deleted in new
chr16	3078569	3078676	ENSG00000262370.5|AC108134.3|lncRNA|chr16:3078569:3078676:-	0	-
#Deleted in new
chr16	3080963	3081086	ENSG00000262370.5|AC108134.3|lncRNA|chr16:3080963:3081086:-	0	-
#Deleted in new
chr16	3081632	3082192	ENSG00000008517.16|IL32|pc|chr16:3081632:3082192:+	0	+
#Deleted in new
chr16	30840696	30840754	ENSG00000099385.11|BCL7C|pc|chr16:30840696:30840754:-	0	-
#Deleted in new
chr16	30851245	30852322	ENSG00000099385.11|BCL7C|pc|chr16:30851245:30852322:-	0	-
#Deleted in new
chr16	3086890	3087087	ENSG00000262370.5|AC108134.3|lncRNA|chr16:3086890:3087087:-	0	-
#Deleted in new
chr16	3086890	3087100	ENSG00000262370.5|AC108134.3|lncRNA|chr16:3086890:3087100:-	0	-
#Deleted in new
chr16	30875221	30876118	ENSG00000260083.1|MIR762HG|lncRNA|chr16:30875221:30876118:+	0	+
#Deleted in new
chr16	30875460	30875486	ENSG00000260083.1|MIR762HG|lncRNA|chr16:30875460:30875486:+	0	+
#Deleted in new
chr16	30875765	30876033	ENSG00000262721.1|AC135048.2|lncRNA|chr16:30875765:30876033:-	0	-
#Deleted in new
chr16	30875911	30876118	ENSG00000260083.1|MIR762HG|lncRNA|chr16:30875911:30876118:+	0	+
#Deleted in new
chr16	30876029	30876118	ENSG00000260083.1|MIR762HG|lncRNA|chr16:30876029:30876118:+	0	+
#Deleted in new
chr16	30894923	30895216	ENSG00000262721.1|AC135048.2|lncRNA|chr16:30894923:30895216:-	0	-
#Deleted in new
chr16	3093267	3093358	ENSG00000130182.7|ZSCAN10|pc|chr16:3093267:3093358:-	0	-
#Partially deleted in new
chr16	30954036	30954506	ENSG00000175938.6|ORAI3|pc|chr16:30954036:30954506:+	0	+
#Deleted in new
chr16	3096449	3096481	ENSG00000130182.7|ZSCAN10|pc|chr16:3096449:3096481:-	0	-
#Partially deleted in new
chr16	31035698	31035761	ENSG00000103496.14|STX4|pc|chr16:31035698:31035761:+	0	+
#Deleted in new
chr16	31041890	31042027	ENSG00000103496.14|STX4|pc|chr16:31041890:31042027:+	0	+
#Partially deleted in new
chr16	31042141	31042975	ENSG00000103496.14|STX4|pc|chr16:31042141:31042975:+	0	+
#Deleted in new
chr16	31043149	31043242	ENSG00000260911.2|AC135050.3|lncRNA|chr16:31043149:31043242:+	0	+
#Deleted in new
chr16	31049512	31049868	ENSG00000260911.2|AC135050.3|lncRNA|chr16:31049512:31049868:+	0	+
#Deleted in new
chr16	31056459	31056725	ENSG00000232748.3|AC135050.1|lncRNA|chr16:31056459:31056725:+	0	+
#Partially deleted in new
chr16	31064649	31064685	ENSG00000167394.12|ZNF668|pc|chr16:31064649:31064685:-	0	-
#Deleted in new
chr16	3106763	3106830	ENSG00000263011.1|AC108134.4|lncRNA|chr16:3106763:3106830:+	0	+
#Deleted in new
chr16	31068830	31069246	ENSG00000261124.1|AC135050.4|lncRNA|chr16:31068830:31069246:+	0	+
#Deleted in new
chr16	3108248	3108331	ENSG00000263011.1|AC108134.4|lncRNA|chr16:3108248:3108331:+	0	+
#Deleted in new
chr16	31092782	31092864	ENSG00000167397.14|VKORC1|pc|chr16:31092782:31092864:-	0	-
#Deleted in new
chr16	3110459	3110954	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3110459:3110954:-	0	-
#Deleted in new
chr16	3110511	3110954	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3110511:3110954:-	0	-
#Deleted in new
chr16	31106106	31106213	ENSG00000103507.13|BCKDK|pc|chr16:31106106:31106213:+	0	+
#Deleted in new
chr16	31115753	31115869	ENSG00000103510.19|KAT8|pc|chr16:31115753:31115869:+	0	+
#Deleted in new
chr16	31118703	31118747	ENSG00000262766.1|AC135050.5|lncRNA|chr16:31118703:31118747:+	0	+
#Deleted in new
chr16	31122234	31122598	ENSG00000278133.1|AC135050.6|lncRNA|chr16:31122234:31122598:+	0	+
#Partially deleted in new
chr16	31123672	31124064	ENSG00000278133.1|AC135050.6|lncRNA|chr16:31123672:31124064:+	0	+
#Deleted in new
chr16	31123789	31123953	ENSG00000278133.1|AC135050.6|lncRNA|chr16:31123789:31123953:+	0	+
#Partially deleted in new
chr16	31134041	31135171	ENSG00000052344.15|PRSS8|pc|chr16:31134041:31135171:-	0	-
#Deleted in new
chr16	31183151	31183285	ENSG00000260304.1|AC009088.2|lncRNA|chr16:31183151:31183285:-	0	-
#Partially deleted in new
chr16	31188466	31189226	ENSG00000089280.18|FUS|pc|chr16:31188466:31189226:+	0	+
#Partially deleted in new
chr16	31191398	31194871	ENSG00000089280.18|FUS|pc|chr16:31191398:31194871:+	0	+
#Deleted in new
chr16	31196130	31196963	ENSG00000260060.1|AC009088.1|lncRNA|chr16:31196130:31196963:+	0	+
#Partially deleted in new
chr16	31216322	31216370	ENSG00000169900.7|PYDC1|pc|chr16:31216322:31216370:-	0	-
#Partially deleted in new
chr16	31224180	31231537	ENSG00000177238.13|TRIM72|pc|chr16:31224180:31231537:+	0	+
#Deleted in new
chr16	3124486	3124607	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3124486:3124607:-	0	-
#Deleted in new
chr16	3125528	3125966	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3125528:3125966:-	0	-
#Deleted in new
chr16	3125599	3125966	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3125599:3125966:-	0	-
#Deleted in new
chr16	3128671	3129653	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3128671:3129653:-	0	-
#Deleted in new
chr16	3128832	3129653	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3128832:3129653:-	0	-
#Deleted in new
chr16	3129247	3129299	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3129247:3129299:-	0	-
#Deleted in new
chr16	3129247	3129310	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3129247:3129310:-	0	-
#Deleted in new
chr16	3129247	3129653	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3129247:3129653:-	0	-
#Deleted in new
chr16	3129460	3129554	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3129460:3129554:-	0	-
#Deleted in new
chr16	3129460	3129653	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3129460:3129653:-	0	-
#Deleted in new
chr16	3129776	3130056	ENSG00000085644.13|ZNF213|pc|chr16:3129776:3130056:+	0	+
#Deleted in new
chr16	3131404	3131600	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3131404:3131600:-	0	-
#Deleted in new
chr16	3131667	3132103	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3131667:3132103:-	0	-
#Deleted in new
chr16	3131746	3131921	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3131746:3131921:-	0	-
#Deleted in new
chr16	3131746	3132042	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3131746:3132042:-	0	-
#Deleted in new
chr16	3131746	3132103	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3131746:3132103:-	0	-
#Deleted in new
chr16	3131756	3132103	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3131756:3132103:-	0	-
#Deleted in new
chr16	3131902	3132103	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3131902:3132103:-	0	-
#Deleted in new
chr16	3132018	3132053	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3132018:3132053:-	0	-
#Deleted in new
chr16	3132322	3132349	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3132322:3132349:-	0	-
#Deleted in new
chr16	3132849	3132942	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3132849:3132942:-	0	-
#Deleted in new
chr16	3132849	3132945	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3132849:3132945:-	0	-
#Deleted in new
chr16	3132849	3133194	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3132849:3133194:-	0	-
#Deleted in new
chr16	3134629	3134827	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3134629:3134827:-	0	-
#Deleted in new
chr16	3134629	3134856	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3134629:3134856:-	0	-
#Deleted in new
chr16	3134629	3134873	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3134629:3134873:-	0	-
#Deleted in new
chr16	3134629	3134882	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3134629:3134882:-	0	-
#Deleted in new
chr16	3134633	3134869	ENSG00000263072.6|ZNF213-AS1|lncRNA|chr16:3134633:3134869:-	0	-
#Deleted in new
chr16	31369980	31370098	ENSG00000140678.16|ITGAX|pc|chr16:31369980:31370098:+	0	+
#Deleted in new
chr16	31382467	31382943	ENSG00000140678.16|ITGAX|pc|chr16:31382467:31382943:+	0	+
#Deleted in new
chr16	31402564	31402868	ENSG00000260757.1|AC093520.1|lncRNA|chr16:31402564:31402868:+	0	+
#Deleted in new
chr16	31432592	31435001	ENSG00000176723.9|ZNF843|pc|chr16:31432592:31435001:-	0	-
#Deleted in new
chr16	31442635	31443025	ENSG00000176723.9|ZNF843|pc|chr16:31442635:31443025:-	0	-
#Deleted in new
chr16	31443142	31443160	ENSG00000176723.9|ZNF843|pc|chr16:31443142:31443160:-	0	-
#Deleted in new
chr16	31449534	31449773	ENSG00000261474.1|AC026471.4|lncRNA|chr16:31449534:31449773:-	0	-
#Deleted in new
chr16	31453283	31453493	ENSG00000261474.1|AC026471.4|lncRNA|chr16:31453283:31453493:-	0	-
#Partially deleted in new
chr16	31489488	31489674	ENSG00000140675.12|SLC5A2|pc|chr16:31489488:31489674:+	0	+
#Partially deleted in new
chr16	31489488	31489704	ENSG00000140675.12|SLC5A2|pc|chr16:31489488:31489704:+	0	+
#Partially deleted in new
chr16	31508470	31509036	ENSG00000260625.2|AC026471.2|lncRNA|chr16:31508470:31509036:+	0	+
#Deleted in new
chr16	31553144	31553567	ENSG00000261475.2|LINC02190|lncRNA|chr16:31553144:31553567:-	0	-
#Deleted in new
chr16	31566359	31567000	ENSG00000278885.1|AC106730.3|lncRNA|chr16:31566359:31567000:-	0	-
#Deleted in new
chr16	3156735	3157483	ENSG00000261889.1|AC108134.2|lncRNA|chr16:3156735:3157483:-	0	-
#Deleted in new
chr1	63160160	63160262	ENSG00000224209.7|LINC00466|lncRNA|chr1:63160160:63160262:-	0	-
#Partially deleted in new
chr1	63161403	63161565	ENSG00000224209.7|LINC00466|lncRNA|chr1:63161403:63161565:-	0	-
#Deleted in new
chr1	63164243	63164355	ENSG00000224209.7|LINC00466|lncRNA|chr1:63164243:63164355:-	0	-
#Deleted in new
chr16	31699675	31699954	ENSG00000260568.1|AC074050.2|lncRNA|chr16:31699675:31699954:-	0	-
#Deleted in new
chr16	31700108	31700261	ENSG00000260568.1|AC074050.2|lncRNA|chr16:31700108:31700261:-	0	-
#Deleted in new
chr16	31700359	31700465	ENSG00000260568.1|AC074050.2|lncRNA|chr16:31700359:31700465:-	0	-
#Partially deleted in new
chr1	63170151	63170424	ENSG00000224209.7|LINC00466|lncRNA|chr1:63170151:63170424:-	0	-
#Partially deleted in new
chr1	63170156	63170424	ENSG00000224209.7|LINC00466|lncRNA|chr1:63170156:63170424:-	0	-
#Deleted in new
chr16	31733510	31733627	ENSG00000197302.10|ZNF720|pc|chr16:31733510:31733627:+	0	+
#Deleted in new
chr1	63174471	63174647	ENSG00000224209.7|LINC00466|lncRNA|chr1:63174471:63174647:-	0	-
#Split in new
chr16	31754454	31759886	ENSG00000197302.10|ZNF720|pc|chr16:31754454:31759886:+	0	+
#Deleted in new
chr16	31759356	31759466	ENSG00000197302.10|ZNF720|pc|chr16:31759356:31759466:+	0	+
#Deleted in new
chr16	31759356	31759553	ENSG00000197302.10|ZNF720|pc|chr16:31759356:31759553:+	0	+
#Deleted in new
chr16	31759356	31759841	ENSG00000197302.10|ZNF720|pc|chr16:31759356:31759841:+	0	+
#Deleted in new
chr16	31759356	31761565	ENSG00000197302.10|ZNF720|pc|chr16:31759356:31761565:+	0	+
#Deleted in new
chr16	31788201	31790993	ENSG00000259810.2|AC002519.1|lncRNA|chr16:31788201:31790993:+	0	+
#Deleted in new
chr16	31792629	31792730	ENSG00000197302.10|ZNF720|pc|chr16:31792629:31792730:+	0	+
#Deleted in new
chr16	31793701	31793707	ENSG00000197302.10|ZNF720|pc|chr16:31793701:31793707:+	0	+
#Deleted in new
chr16	3181232	3181445	ENSG00000262521.1|AJ003147.1|lncRNA|chr16:3181232:3181445:-	0	-
#Deleted in new
chr16	3183777	3184018	ENSG00000262521.1|AJ003147.1|lncRNA|chr16:3183777:3184018:-	0	-
#Deleted in new
chr1	63185558	63185661	ENSG00000224209.7|LINC00466|lncRNA|chr1:63185558:63185661:-	0	-
#Deleted in new
chr16	31873757	31873969	ENSG00000185947.14|ZNF267|pc|chr16:31873757:31873969:+	0	+
#Deleted in new
chr16	31873806	31873969	ENSG00000185947.14|ZNF267|pc|chr16:31873806:31873969:+	0	+
#Deleted in new
chr16	31873830	31873969	ENSG00000185947.14|ZNF267|pc|chr16:31873830:31873969:+	0	+
#Deleted in new
chr16	31873832	31873969	ENSG00000185947.14|ZNF267|pc|chr16:31873832:31873969:+	0	+
#Deleted in new
chr16	31874065	31874264	ENSG00000185947.14|ZNF267|pc|chr16:31874065:31874264:+	0	+
#Partially deleted in new
chr16	31875151	31875302	ENSG00000185947.14|ZNF267|pc|chr16:31875151:31875302:+	0	+
#Partially deleted in new
chr16	31875202	31875302	ENSG00000185947.14|ZNF267|pc|chr16:31875202:31875302:+	0	+
#Deleted in new
chr16	3188211	3188479	ENSG00000262668.1|AJ003147.2|lncRNA|chr16:3188211:3188479:+	0	+
#Deleted in new
chr16	31890206	31890250	ENSG00000185947.14|ZNF267|pc|chr16:31890206:31890250:+	0	+
#Deleted in new
chr16	3189748	3189798	ENSG00000262668.1|AJ003147.2|lncRNA|chr16:3189748:3189798:+	0	+
#Deleted in new
chr16	3191237	3191337	ENSG00000262668.1|AJ003147.2|lncRNA|chr16:3191237:3191337:+	0	+
#Deleted in new
chr1	63203104	63203167	ENSG00000224209.7|LINC00466|lncRNA|chr1:63203104:63203167:-	0	-
#Partially deleted in new
chr16	32185623	32186311	ENSG00000279997.1|AC133485.6|lncRNA|chr16:32185623:32186311:+	0	+
#Partially deleted in new
chr16	32188332	32188417	ENSG00000260847.1|AC133485.5|lncRNA|chr16:32188332:32188417:+	0	+
#Partially deleted in new
chr1	63222884	63223224	ENSG00000224209.7|LINC00466|lncRNA|chr1:63222884:63223224:-	0	-
#Partially deleted in new
chr16	3223497	3227805	ENSG00000010539.11|ZNF200|pc|chr16:3223497:3227805:-	0	-
#Deleted in new
chr16	32250619	32250811	ENSG00000260575.1|AC133485.3|lncRNA|chr16:32250619:32250811:-	0	-
#Partially deleted in new
chr16	32252718	32253715	ENSG00000205456.11|TP53TG3D|pc|chr16:32252718:32253715:+	0	+
#Deleted in new
chr16	32253820	32253987	ENSG00000205456.11|TP53TG3D|pc|chr16:32253820:32253987:+	0	+
#Deleted in new
chr16	32253835	32253987	ENSG00000205456.11|TP53TG3D|pc|chr16:32253835:32253987:+	0	+
#Deleted in new
chr16	32254051	32254098	ENSG00000205456.11|TP53TG3D|pc|chr16:32254051:32254098:+	0	+
#Deleted in new
chr16	32254211	32254683	ENSG00000205456.11|TP53TG3D|pc|chr16:32254211:32254683:+	0	+
#Deleted in new
chr16	32254352	32254422	ENSG00000260575.1|AC133485.3|lncRNA|chr16:32254352:32254422:-	0	-
#Deleted in new
chr16	32254393	32254683	ENSG00000205456.11|TP53TG3D|pc|chr16:32254393:32254683:+	0	+
#Deleted in new
chr16	32254393	32255237	ENSG00000205456.11|TP53TG3D|pc|chr16:32254393:32255237:+	0	+
#Deleted in new
chr16	32254890	32254935	ENSG00000205456.11|TP53TG3D|pc|chr16:32254890:32254935:+	0	+
#Deleted in new
chr16	32254890	32255065	ENSG00000205456.11|TP53TG3D|pc|chr16:32254890:32255065:+	0	+
#Deleted in new
chr16	32254890	32255214	ENSG00000205456.11|TP53TG3D|pc|chr16:32254890:32255214:+	0	+
#Deleted in new
chr16	32254890	32255634	ENSG00000205456.11|TP53TG3D|pc|chr16:32254890:32255634:+	0	+
#Deleted in new
chr16	32254890	32255919	ENSG00000205456.11|TP53TG3D|pc|chr16:32254890:32255919:+	0	+
#Deleted in new
chr16	32254890	32255922	ENSG00000205456.11|TP53TG3D|pc|chr16:32254890:32255922:+	0	+
#Deleted in new
chr16	32262826	32263542	ENSG00000260402.1|AC133485.2|lncRNA|chr16:32262826:32263542:-	0	-
#Deleted in new
chr16	32262907	32263291	ENSG00000260402.1|AC133485.2|lncRNA|chr16:32262907:32263291:-	0	-
#Deleted in new
chr16	32263746	32263787	ENSG00000260402.1|AC133485.2|lncRNA|chr16:32263746:32263787:-	0	-
#Deleted in new
chr16	32263746	32265514	ENSG00000260402.1|AC133485.2|lncRNA|chr16:32263746:32265514:-	0	-
#Deleted in new
chr16	3232420	3232544	ENSG00000010539.11|ZNF200|pc|chr16:3232420:3232544:-	0	-
#Deleted in new
chr16	3232420	3232547	ENSG00000010539.11|ZNF200|pc|chr16:3232420:3232547:-	0	-
#Deleted in new
chr16	3232430	3232547	ENSG00000010539.11|ZNF200|pc|chr16:3232430:3232547:-	0	-
#Deleted in new
chr16	3232832	3232921	ENSG00000010539.11|ZNF200|pc|chr16:3232832:3232921:-	0	-
#Duplicated in new
chr16	3233505	3233836	ENSG00000010539.11|ZNF200|pc|chr16:3233505:3233836:-	0	-
#Duplicated in new
chr16	3233626	3233836	ENSG00000010539.11|ZNF200|pc|chr16:3233626:3233836:-	0	-
#Deleted in new
chr16	3235932	3236003	ENSG00000010539.11|ZNF200|pc|chr16:3235932:3236003:-	0	-
#Deleted in new
chr16	3235967	3236221	ENSG00000010539.11|ZNF200|pc|chr16:3235967:3236221:-	0	-
#Deleted in new
chr16	3248464	3248562	ENSG00000103313.12|MEFV|pc|chr16:3248464:3248562:-	0	-
#Deleted in new
chr1	63249919	63250476	ENSG00000228734.2|AC096543.2|lncRNA|chr1:63249919:63250476:+	0	+
#Partially deleted in new
chr16	3251956	3252049	ENSG00000103313.12|MEFV|pc|chr16:3251956:3252049:-	0	-
#Deleted in new
chr16	3263742	3265768	ENSG00000281005.1|LINC00921|lncRNA|chr16:3263742:3265768:+	0	+
#Deleted in new
chr16	3263799	3263883	ENSG00000006194.9|ZNF263|pc|chr16:3263799:3263883:+	0	+
#Deleted in new
chr16	3263799	3263883	ENSG00000281005.1|LINC00921|lncRNA|chr16:3263799:3263883:+	0	+
#Deleted in new
chr16	32649754	32649890	ENSG00000261569.5|AC138907.7|lncRNA|chr16:32649754:32649890:+	0	+
#Partially deleted in new
chr16	32650315	32650401	ENSG00000261569.5|AC138907.7|lncRNA|chr16:32650315:32650401:+	0	+
#Deleted in new
chr16	3265665	3265768	ENSG00000281005.1|LINC00921|lncRNA|chr16:3265665:3265768:+	0	+
#Deleted in new
chr16	32663580	32663956	ENSG00000261569.5|AC138907.7|lncRNA|chr16:32663580:32663956:+	0	+
#Deleted in new
chr16	32663924	32665693	ENSG00000260311.1|AC138907.1|lncRNA|chr16:32663924:32665693:+	0	+
#Deleted in new
chr16	32665652	32665693	ENSG00000260311.1|AC138907.1|lncRNA|chr16:32665652:32665693:+	0	+
#Deleted in new
chr16	32665897	32666533	ENSG00000260311.1|AC138907.1|lncRNA|chr16:32665897:32666533:+	0	+
#Deleted in new
chr16	32666148	32666533	ENSG00000260311.1|AC138907.1|lncRNA|chr16:32666148:32666533:+	0	+
#Deleted in new
chr16	3267125	3267181	ENSG00000281005.1|LINC00921|lncRNA|chr16:3267125:3267181:+	0	+
#Deleted in new
chr16	3267125	3267567	ENSG00000281005.1|LINC00921|lncRNA|chr16:3267125:3267567:+	0	+
#Deleted in new
chr16	32673527	32674564	ENSG00000183632.14|TP53TG3|pc|chr16:32673527:32674564:-	0	-
#Deleted in new
chr16	32673530	32674564	ENSG00000183632.14|TP53TG3|pc|chr16:32673530:32674564:-	0	-
#Deleted in new
chr16	32674087	32674564	ENSG00000183632.14|TP53TG3|pc|chr16:32674087:32674564:-	0	-
#Deleted in new
chr16	32674217	32675065	ENSG00000183632.14|TP53TG3|pc|chr16:32674217:32675065:-	0	-
#Deleted in new
chr16	32674240	32674564	ENSG00000183632.14|TP53TG3|pc|chr16:32674240:32674564:-	0	-
#Deleted in new
chr16	32674278	32674564	ENSG00000183632.14|TP53TG3|pc|chr16:32674278:32674564:-	0	-
#Deleted in new
chr16	32674389	32674564	ENSG00000183632.14|TP53TG3|pc|chr16:32674389:32674564:-	0	-
#Deleted in new
chr16	32674657	32675065	ENSG00000183632.14|TP53TG3|pc|chr16:32674657:32675065:-	0	-
#Deleted in new
chr16	32674776	32675065	ENSG00000183632.14|TP53TG3|pc|chr16:32674776:32675065:-	0	-
#Deleted in new
chr16	32674776	32675239	ENSG00000183632.14|TP53TG3|pc|chr16:32674776:32675239:-	0	-
#Deleted in new
chr16	32675036	32675106	ENSG00000260974.1|AC138907.3|lncRNA|chr16:32675036:32675106:+	0	+
#Deleted in new
chr16	32675352	32675399	ENSG00000183632.14|TP53TG3|pc|chr16:32675352:32675399:-	0	-
#Deleted in new
chr16	32675463	32675621	ENSG00000183632.14|TP53TG3|pc|chr16:32675463:32675621:-	0	-
#Deleted in new
chr16	32675463	32675630	ENSG00000183632.14|TP53TG3|pc|chr16:32675463:32675630:-	0	-
#Partially deleted in new
chr16	32675735	32676732	ENSG00000183632.14|TP53TG3|pc|chr16:32675735:32676732:-	0	-
#Deleted in new
chr16	32678639	32678831	ENSG00000260974.1|AC138907.3|lncRNA|chr16:32678639:32678831:+	0	+
#Deleted in new
chr16	3273608	3275807	ENSG00000279330.1|AJ003147.3|lncRNA|chr16:3273608:3275807:+	0	+
#Partially deleted in new
chr16	32741009	32741094	ENSG00000260845.1|AC138907.2|lncRNA|chr16:32741009:32741094:-	0	-
#Partially deleted in new
chr16	32781882	32784138	ENSG00000278950.1|AC138907.8|lncRNA|chr16:32781882:32784138:+	0	+
#Partially deleted in new
chr16	32786393	32787379	ENSG00000279780.1|AC138907.9|lncRNA|chr16:32786393:32787379:+	0	+
#Partially deleted in new
chr16	32824417	32824645	ENSG00000260158.1|AC137761.1|lncRNA|chr16:32824417:32824645:+	0	+
#Partially deleted in new
chr16	32887336	32888628	ENSG00000214614.2|AC142086.1|lncRNA|chr16:32887336:32888628:+	0	+
#Deleted in new
chr16	32887817	32888874	ENSG00000214614.2|AC142086.1|lncRNA|chr16:32887817:32888874:+	0	+
#Deleted in new
chr16	3292878	3293403	ENSG00000279031.1|AC004232.3|lncRNA|chr16:3292878:3293403:+	0	+
#Duplicated in new
chr16	3298831	3302009	ENSG00000140993.10|TIGD7|pc|chr16:3298831:3302009:-	0	-
#Duplicated in new
chr16	3299105	3301400	ENSG00000006194.9|ZNF263|pc|chr16:3299105:3301400:+	0	+
#Duplicated in new
chr16	32995790	32995867	ENSG00000260921.1|AC142086.4|lncRNA|chr16:32995790:32995867:+	0	+
#Deleted in new
chr16	32996278	32996770	ENSG00000260921.1|AC142086.4|lncRNA|chr16:32996278:32996770:+	0	+
#Deleted in new
chr16	3303758	3303872	ENSG00000140993.10|TIGD7|pc|chr16:3303758:3303872:-	0	-
#Deleted in new
chr16	33043608	33044138	ENSG00000260141.1|AC145350.2|lncRNA|chr16:33043608:33044138:-	0	-
#Deleted in new
chr16	3304763	3304944	ENSG00000140993.10|TIGD7|pc|chr16:3304763:3304944:-	0	-
#Deleted in new
chr16	3304763	3305150	ENSG00000140993.10|TIGD7|pc|chr16:3304763:3305150:-	0	-
#Deleted in new
chr16	3304993	3305071	ENSG00000140993.10|TIGD7|pc|chr16:3304993:3305071:-	0	-
#Deleted in new
chr16	3305211	3305430	ENSG00000140993.10|TIGD7|pc|chr16:3305211:3305430:-	0	-
#Deleted in new
chr16	3305211	3305645	ENSG00000140993.10|TIGD7|pc|chr16:3305211:3305645:-	0	-
#Deleted in new
chr16	3305405	3305643	ENSG00000162086.14|ZNF75A|pc|chr16:3305405:3305643:+	0	+
#Split in new
chr16	3305483	3309472	ENSG00000162086.14|ZNF75A|pc|chr16:3305483:3309472:+	0	+
#Deleted in new
chr16	3305485	3305643	ENSG00000162086.14|ZNF75A|pc|chr16:3305485:3305643:+	0	+
#Deleted in new
chr16	3305507	3305643	ENSG00000162086.14|ZNF75A|pc|chr16:3305507:3305643:+	0	+
#Deleted in new
chr16	3305511	3305705	ENSG00000140993.10|TIGD7|pc|chr16:3305511:3305705:-	0	-
#Deleted in new
chr16	3305511	3305727	ENSG00000140993.10|TIGD7|pc|chr16:3305511:3305727:-	0	-
#Deleted in new
chr16	3305511	3305729	ENSG00000140993.10|TIGD7|pc|chr16:3305511:3305729:-	0	-
#Partially deleted in new
chr16	33061456	33061584	ENSG00000260141.1|AC145350.2|lncRNA|chr16:33061456:33061584:-	0	-
#Partially deleted in new
chr16	3307572	3308393	ENSG00000262899.1|AC004232.2|lncRNA|chr16:3307572:3308393:-	0	-
#Deleted in new
chr16	3310610	3310946	ENSG00000162086.14|ZNF75A|pc|chr16:3310610:3310946:+	0	+
#Partially deleted in new
chr16	33129315	33129400	ENSG00000261682.1|AC145350.4|lncRNA|chr16:33129315:33129400:+	0	+
#Deleted in new
chr1	63315948	63315986	ENSG00000224209.7|LINC00466|lncRNA|chr1:63315948:63315986:-	0	-
#Deleted in new
chr1	63315948	63316087	ENSG00000224209.7|LINC00466|lncRNA|chr1:63315948:63316087:-	0	-
#Partially deleted in new
chr16	3315990	3317022	ENSG00000162086.14|ZNF75A|pc|chr16:3315990:3317022:+	0	+
#Deleted in new
chr16	33191560	33191752	ENSG00000260419.1|AC138869.2|lncRNA|chr16:33191560:33191752:-	0	-
#Partially deleted in new
chr16	33193658	33194655	ENSG00000205457.11|TP53TG3C|pc|chr16:33193658:33194655:+	0	+
#Deleted in new
chr16	33194760	33194927	ENSG00000205457.11|TP53TG3C|pc|chr16:33194760:33194927:+	0	+
#Deleted in new
chr16	33194769	33194927	ENSG00000205457.11|TP53TG3C|pc|chr16:33194769:33194927:+	0	+
#Deleted in new
chr16	33194991	33195038	ENSG00000205457.11|TP53TG3C|pc|chr16:33194991:33195038:+	0	+
#Deleted in new
chr16	33195166	33195614	ENSG00000205457.11|TP53TG3C|pc|chr16:33195166:33195614:+	0	+
#Deleted in new
chr16	33195284	33195354	ENSG00000260419.1|AC138869.2|lncRNA|chr16:33195284:33195354:-	0	-
#Deleted in new
chr16	33195325	33195614	ENSG00000205457.11|TP53TG3C|pc|chr16:33195325:33195614:+	0	+
#Deleted in new
chr16	33195325	33195733	ENSG00000205457.11|TP53TG3C|pc|chr16:33195325:33195733:+	0	+
#Deleted in new
chr16	33195325	33196173	ENSG00000205457.11|TP53TG3C|pc|chr16:33195325:33196173:+	0	+
#Deleted in new
chr16	33195826	33195871	ENSG00000205457.11|TP53TG3C|pc|chr16:33195826:33195871:+	0	+
#Deleted in new
chr16	33195826	33196150	ENSG00000205457.11|TP53TG3C|pc|chr16:33195826:33196150:+	0	+
#Deleted in new
chr16	33195826	33196236	ENSG00000205457.11|TP53TG3C|pc|chr16:33195826:33196236:+	0	+
#Deleted in new
chr16	33195826	33196855	ENSG00000205457.11|TP53TG3C|pc|chr16:33195826:33196855:+	0	+
#Deleted in new
chr16	33195826	33196858	ENSG00000205457.11|TP53TG3C|pc|chr16:33195826:33196858:+	0	+
#Deleted in new
chr16	33203772	33204489	ENSG00000260827.1|AC138869.3|lncRNA|chr16:33203772:33204489:-	0	-
#Deleted in new
chr16	33203853	33204238	ENSG00000260827.1|AC138869.3|lncRNA|chr16:33203853:33204238:-	0	-
#Deleted in new
chr16	33204693	33204734	ENSG00000260827.1|AC138869.3|lncRNA|chr16:33204693:33204734:-	0	-
#Deleted in new
chr16	33204693	33206462	ENSG00000260827.1|AC138869.3|lncRNA|chr16:33204693:33206462:-	0	-
#Deleted in new
chr16	33206430	33206806	ENSG00000261507.1|AC141257.2|lncRNA|chr16:33206430:33206806:-	0	-
#Partially deleted in new
chr16	33303738	33304735	ENSG00000275034.2|TP53TG3E|pc|chr16:33303738:33304735:+	0	+
#Deleted in new
chr16	33305405	33306318	ENSG00000275034.2|TP53TG3E|pc|chr16:33305405:33306318:+	0	+
#Deleted in new
chr16	33305906	33306935	ENSG00000275034.2|TP53TG3E|pc|chr16:33305906:33306935:+	0	+
#Partially deleted in new
chr16	33330082	33330168	ENSG00000261507.1|AC141257.2|lncRNA|chr16:33330082:33330168:-	0	-
#Partially deleted in new
chr16	33360273	33361270	ENSG00000261509.6|TP53TG3B|pc|chr16:33360273:33361270:+	0	+
#Deleted in new
chr16	33361375	33361542	ENSG00000261509.6|TP53TG3B|pc|chr16:33361375:33361542:+	0	+
#Deleted in new
chr16	33361390	33361542	ENSG00000261509.6|TP53TG3B|pc|chr16:33361390:33361542:+	0	+
#Deleted in new
chr16	33361606	33361653	ENSG00000261509.6|TP53TG3B|pc|chr16:33361606:33361653:+	0	+
#Deleted in new
chr16	33361940	33362229	ENSG00000261509.6|TP53TG3B|pc|chr16:33361940:33362229:+	0	+
#Deleted in new
chr16	33361940	33362788	ENSG00000261509.6|TP53TG3B|pc|chr16:33361940:33362788:+	0	+
#Deleted in new
chr16	33362441	33362765	ENSG00000261509.6|TP53TG3B|pc|chr16:33362441:33362765:+	0	+
#Deleted in new
chr16	33362441	33363190	ENSG00000261509.6|TP53TG3B|pc|chr16:33362441:33363190:+	0	+
#Deleted in new
chr16	33362441	33363475	ENSG00000261509.6|TP53TG3B|pc|chr16:33362441:33363475:+	0	+
#Deleted in new
chr16	33362441	33363478	ENSG00000261509.6|TP53TG3B|pc|chr16:33362441:33363478:+	0	+
#Deleted in new
chr16	33370472	33370857	ENSG00000261009.1|AC141257.1|lncRNA|chr16:33370472:33370857:-	0	-
#Deleted in new
chr16	33370472	33371108	ENSG00000261009.1|AC141257.1|lncRNA|chr16:33370472:33371108:-	0	-
#Deleted in new
chr16	33371312	33371353	ENSG00000261009.1|AC141257.1|lncRNA|chr16:33371312:33371353:-	0	-
#Deleted in new
chr16	33371312	33372915	ENSG00000261009.1|AC141257.1|lncRNA|chr16:33371312:33372915:-	0	-
#Partially deleted in new
chr16	33459044	33460041	ENSG00000278848.2|TP53TG3F|pc|chr16:33459044:33460041:+	0	+
#Deleted in new
chr16	33460711	33462249	ENSG00000278848.2|TP53TG3F|pc|chr16:33460711:33462249:+	0	+
#Deleted in new
chr16	33461212	33462246	ENSG00000278848.2|TP53TG3F|pc|chr16:33461212:33462246:+	0	+
#Partially deleted in new
chr16	33533815	33534163	ENSG00000260626.1|AC136944.1|lncRNA|chr16:33533815:33534163:-	0	-
#Deleted in new
chr16	33534764	33534976	ENSG00000260626.1|AC136944.1|lncRNA|chr16:33534764:33534976:-	0	-
#Partially deleted in new
chr16	33541841	33545812	ENSG00000261200.1|AC136944.2|lncRNA|chr16:33541841:33545812:-	0	-
#Deleted in new
chr16	33548296	33548559	ENSG00000261466.2|AC136944.4|lncRNA|chr16:33548296:33548559:-	0	-
#Deleted in new
chr16	33549422	33549588	ENSG00000261466.2|AC136944.4|lncRNA|chr16:33549422:33549588:-	0	-
#Deleted in new
chr16	3365098	3365182	ENSG00000262621.4|AC025283.2|pc|chr16:3365098:3365182:+	0	+
#Deleted in new
chr16	3365111	3365182	ENSG00000262621.4|AC025283.2|pc|chr16:3365111:3365182:+	0	+
#Split in new
chr16	3384009	3384706	ENSG00000262621.4|AC025283.2|pc|chr16:3384009:3384706:+	0	+
#Deleted in new
chr16	33857934	33858122	ENSG00000260312.1|AC140658.1|lncRNA|chr16:33857934:33858122:-	0	-
#Duplicated in new
chr16	33858533	33858610	ENSG00000260312.1|AC140658.1|lncRNA|chr16:33858533:33858610:-	0	-
#Deleted in new
chr16	3393648	3393814	ENSG00000140987.19|ZSCAN32|pc|chr16:3393648:3393814:-	0	-
#Partially deleted in new
chr16	33972911	33974203	ENSG00000205452.4|AC133561.2|lncRNA|chr16:33972911:33974203:-	0	-
#Deleted in new
chr16	33973046	33973722	ENSG00000205452.4|AC133561.2|lncRNA|chr16:33973046:33973722:-	0	-
#Deleted in new
chr16	3404908	3405043	ENSG00000103343.12|ZNF174|pc|chr16:3404908:3405043:+	0	+
#Deleted in new
chr16	3404908	3405079	ENSG00000103343.12|ZNF174|pc|chr16:3404908:3405079:+	0	+
#Deleted in new
chr16	34158584	34160036	ENSG00000256642.1|LINC00273|lncRNA|chr16:34158584:34160036:-	0	-
#Deleted in new
chr16	3447481	3447620	ENSG00000122390.17|NAA60|pc|chr16:3447481:3447620:+	0	+
#Deleted in new
chr16	3448470	3448540	ENSG00000122390.17|NAA60|pc|chr16:3448470:3448540:+	0	+
#Deleted in new
chr16	3448470	3448540	ENSG00000262621.4|AC025283.2|pc|chr16:3448470:3448540:+	0	+
#Deleted in new
chr16	3448470	3448595	ENSG00000122390.17|NAA60|pc|chr16:3448470:3448595:+	0	+
#Deleted in new
chr16	3448470	3448596	ENSG00000122390.17|NAA60|pc|chr16:3448470:3448596:+	0	+
#Deleted in new
chr16	3448470	3448967	ENSG00000122390.17|NAA60|pc|chr16:3448470:3448967:+	0	+
#Partially deleted in new
chr1	63453614	63453974	ENSG00000142856.16|ITGB3BP|pc|chr1:63453614:63453974:-	0	-
#Deleted in new
chr1	63453775	63453831	ENSG00000142856.16|ITGB3BP|pc|chr1:63453775:63453831:-	0	-
#Deleted in new
chr16	3456730	3456916	ENSG00000122390.17|NAA60|pc|chr16:3456730:3456916:+	0	+
#Deleted in new
chr1	63457133	63457695	ENSG00000142856.16|ITGB3BP|pc|chr1:63457133:63457695:-	0	-
#Deleted in new
chr1	63457464	63458373	ENSG00000142856.16|ITGB3BP|pc|chr1:63457464:63458373:-	0	-
#Deleted in new
chr1	63457683	63458373	ENSG00000142856.16|ITGB3BP|pc|chr1:63457683:63458373:-	0	-
#Deleted in new
chr16	3462597	3462683	ENSG00000122390.17|NAA60|pc|chr16:3462597:3462683:+	0	+
#Deleted in new
chr16	3467676	3468196	ENSG00000122390.17|NAA60|pc|chr16:3467676:3468196:+	0	+
#Deleted in new
chr16	3472158	3472385	ENSG00000122390.17|NAA60|pc|chr16:3472158:3472385:+	0	+
#Deleted in new
chr16	34941976	34943880	ENSG00000279165.1|AC135776.4|lncRNA|chr16:34941976:34943880:+	0	+
#Deleted in new
chr16	34978743	34979191	ENSG00000260854.1|LINC02184|lncRNA|chr16:34978743:34979191:-	0	-
#Deleted in new
chr16	34979740	34979844	ENSG00000260854.1|LINC02184|lncRNA|chr16:34979740:34979844:-	0	-
#Deleted in new
chr16	3502043	3502084	ENSG00000103351.12|CLUAP1|pc|chr16:3502043:3502084:+	0	+
#Deleted in new
chr16	3509893	3509969	ENSG00000103351.12|CLUAP1|pc|chr16:3509893:3509969:+	0	+
#Partially deleted in new
chr1	63510064	63510181	ENSG00000142856.16|ITGB3BP|pc|chr1:63510064:63510181:-	0	-
#Deleted in new
chr16	35143721	35143963	ENSG00000261800.1|AC023824.6|lncRNA|chr16:35143721:35143963:+	0	+
#Deleted in new
chr16	35144420	35144881	ENSG00000261800.1|AC023824.6|lncRNA|chr16:35144420:35144881:+	0	+
#Deleted in new
chr16	35148635	35154366	ENSG00000280180.1|AC023824.7|lncRNA|chr16:35148635:35154366:+	0	+
#Split in new
chr16	35192686	35195661	ENSG00000260073.2|AC023824.1|lncRNA|chr16:35192686:35195661:-	0	-
#Partially deleted in new
chr16	35195778	35197544	ENSG00000261398.1|AC023824.5|lncRNA|chr16:35195778:35197544:+	0	+
#Deleted in new
chr1	6352224	6352249	ENSG00000097021.19|ACOT7|pc|chr1:6352224:6352249:-	0	-
#Deleted in new
chr16	35248682	35248801	ENSG00000260958.2|AC023824.4|lncRNA|chr16:35248682:35248801:+	0	+
#Partially deleted in new
chr16	3536121	3537669	ENSG00000103351.12|CLUAP1|pc|chr16:3536121:3537669:+	0	+
#Partially deleted in new
chr16	3536121	3539048	ENSG00000103351.12|CLUAP1|pc|chr16:3536121:3539048:+	0	+
#Deleted in new
chr16	35363411	35363528	ENSG00000259841.6|LINC01566|lncRNA|chr16:35363411:35363528:+	0	+
#Deleted in new
chr16	35363530	35363830	ENSG00000259841.6|LINC01566|lncRNA|chr16:35363530:35363830:+	0	+
#Deleted in new
chr16	35376505	35376649	ENSG00000259841.6|LINC01566|lncRNA|chr16:35376505:35376649:+	0	+
#Deleted in new
chr16	35378571	35378813	ENSG00000259841.6|LINC01566|lncRNA|chr16:35378571:35378813:+	0	+
#Deleted in new
chr16	35379968	35380087	ENSG00000259841.6|LINC01566|lncRNA|chr16:35379968:35380087:+	0	+
#Deleted in new
chr16	35381593	35382261	ENSG00000259841.6|LINC01566|lncRNA|chr16:35381593:35382261:+	0	+
#Deleted in new
chr16	35382423	35382466	ENSG00000259841.6|LINC01566|lncRNA|chr16:35382423:35382466:+	0	+
#Deleted in new
chr16	35382468	35382598	ENSG00000259841.6|LINC01566|lncRNA|chr16:35382468:35382598:+	0	+
#Deleted in new
chr16	35382710	35382855	ENSG00000259841.6|LINC01566|lncRNA|chr16:35382710:35382855:+	0	+
#Deleted in new
chr16	35385878	35386049	ENSG00000259841.6|LINC01566|lncRNA|chr16:35385878:35386049:+	0	+
#Partially deleted in new
chr16	3539032	3541915	ENSG00000167984.17|NLRC3|pc|chr16:3539032:3541915:-	0	-
#Partially deleted in new
chr16	3539037	3541915	ENSG00000167984.17|NLRC3|pc|chr16:3539037:3541915:-	0	-
#Deleted in new
chr16	35491173	35491503	ENSG00000261350.1|AC018558.2|lncRNA|chr16:35491173:35491503:-	0	-
#Deleted in new
chr16	35495541	35495588	ENSG00000261445.1|AC018558.3|lncRNA|chr16:35495541:35495588:-	0	-
#Deleted in new
chr16	35496376	35496457	ENSG00000261445.1|AC018558.3|lncRNA|chr16:35496376:35496457:-	0	-
#Deleted in new
chr16	35505092	35505414	ENSG00000260857.2|AC018558.1|lncRNA|chr16:35505092:35505414:-	0	-
#Deleted in new
chr16	35506325	35506462	ENSG00000260857.2|AC018558.1|lncRNA|chr16:35506325:35506462:-	0	-
#Deleted in new
chr1	63551047	63551090	ENSG00000203965.12|EFCAB7|pc|chr1:63551047:63551090:+	0	+
#Deleted in new
chr16	3555780	3555916	ENSG00000167984.17|NLRC3|pc|chr16:3555780:3555916:-	0	-
#Deleted in new
chr16	3567242	3567324	ENSG00000167984.17|NLRC3|pc|chr16:3567242:3567324:-	0	-
#Deleted in new
chr16	3567242	3567385	ENSG00000167984.17|NLRC3|pc|chr16:3567242:3567385:-	0	-
#Deleted in new
chr16	35743267	35743402	ENSG00000261122.6|LINC02167|lncRNA|chr16:35743267:35743402:+	0	+
#Deleted in new
chr16	35745698	35745832	ENSG00000261122.6|LINC02167|lncRNA|chr16:35745698:35745832:+	0	+
#Deleted in new
chr16	35746551	35746826	ENSG00000261122.6|LINC02167|lncRNA|chr16:35746551:35746826:+	0	+
#Deleted in new
chr16	35748356	35748587	ENSG00000261122.6|LINC02167|lncRNA|chr16:35748356:35748587:+	0	+
#Deleted in new
chr16	35748760	35748837	ENSG00000261122.6|LINC02167|lncRNA|chr16:35748760:35748837:+	0	+
#Deleted in new
chr16	35755378	35755626	ENSG00000261122.6|LINC02167|lncRNA|chr16:35755378:35755626:+	0	+
#Deleted in new
chr16	35755378	35755796	ENSG00000261122.6|LINC02167|lncRNA|chr16:35755378:35755796:+	0	+
#Deleted in new
chr16	35755378	35756515	ENSG00000261122.6|LINC02167|lncRNA|chr16:35755378:35756515:+	0	+
#Deleted in new
chr16	35785568	35786887	ENSG00000260611.1|AC106785.2|lncRNA|chr16:35785568:35786887:-	0	-
#Deleted in new
chr16	35903116	35904916	ENSG00000279666.1|AC116553.3|lncRNA|chr16:35903116:35904916:+	0	+
#Deleted in new
chr1	63599922	63600222	ENSG00000079739.15|PGM1|pc|chr1:63599922:63600222:+	0	+
#Deleted in new
chr16	3640714	3641237	ENSG00000213918.10|DNASE1|pc|chr16:3640714:3641237:+	0	+
#Deleted in new
chr16	3642879	3643036	ENSG00000213918.10|DNASE1|pc|chr16:3642879:3643036:+	0	+
#Deleted in new
chr16	3642891	3643036	ENSG00000213918.10|DNASE1|pc|chr16:3642891:3643036:+	0	+
#Deleted in new
chr16	3642937	3643036	ENSG00000213918.10|DNASE1|pc|chr16:3642937:3643036:+	0	+
#Partially deleted in new
chr16	3651836	3655044	ENSG00000213918.10|DNASE1|pc|chr16:3651836:3655044:+	0	+
#Partially deleted in new
chr16	3657905	3665472	ENSG00000213918.10|DNASE1|pc|chr16:3657905:3665472:+	0	+
#Deleted in new
chr16	3676430	3676946	ENSG00000126602.10|TRAP1|pc|chr16:3676430:3676946:-	0	-
#Partially deleted in new
chr16	3677497	3678304	ENSG00000126602.10|TRAP1|pc|chr16:3677497:3678304:-	0	-
#Deleted in new
chr16	3678284	3678551	ENSG00000126602.10|TRAP1|pc|chr16:3678284:3678551:-	0	-
#Deleted in new
chr16	3678365	3678545	ENSG00000126602.10|TRAP1|pc|chr16:3678365:3678545:-	0	-
#Deleted in new
chr16	3686997	3687380	ENSG00000276754.1|AC006111.3|lncRNA|chr16:3686997:3687380:+	0	+
#Deleted in new
chr16	3689714	3689811	ENSG00000126602.10|TRAP1|pc|chr16:3689714:3689811:-	0	-
#Deleted in new
chr16	370309	370338	ENSG00000086504.15|MRPL28|pc|chr16:370309:370338:-	0	-
#Deleted in new
chr16	370361	370432	ENSG00000086504.15|MRPL28|pc|chr16:370361:370432:-	0	-
#Deleted in new
chr16	3704219	3704334	ENSG00000126602.10|TRAP1|pc|chr16:3704219:3704334:-	0	-
#Partially deleted in new
chr16	370484	370509	ENSG00000086504.15|MRPL28|pc|chr16:370484:370509:-	0	-
#Deleted in new
chr16	370498	370509	ENSG00000086504.15|MRPL28|pc|chr16:370498:370509:-	0	-
#Deleted in new
chr16	3710384	3710453	ENSG00000126602.10|TRAP1|pc|chr16:3710384:3710453:-	0	-
#Deleted in new
chr16	3730511	3730552	ENSG00000005339.14|CREBBP|pc|chr16:3730511:3730552:-	0	-
#Partially deleted in new
chr16	3740398	3743468	ENSG00000005339.14|CREBBP|pc|chr16:3740398:3743468:-	0	-
#Deleted in new
chr16	3743662	3743732	ENSG00000005339.14|CREBBP|pc|chr16:3743662:3743732:-	0	-
#Deleted in new
chr16	3784472	3784515	ENSG00000005339.14|CREBBP|pc|chr16:3784472:3784515:-	0	-
#Deleted in new
chr16	3812937	3812977	ENSG00000005339.14|CREBBP|pc|chr16:3812937:3812977:-	0	-
#Deleted in new
chr16	3812997	3813072	ENSG00000005339.14|CREBBP|pc|chr16:3812997:3813072:-	0	-
#Deleted in new
chr16	384255	384396	ENSG00000129925.10|TMEM8A|pc|chr16:384255:384396:-	0	-
#Deleted in new
chr16	3931216	3931721	ENSG00000262888.1|AC005736.2|lncRNA|chr16:3931216:3931721:-	0	-
#Deleted in new
chr16	3943259	3943375	ENSG00000262888.1|AC005736.2|lncRNA|chr16:3943259:3943375:-	0	-
#Deleted in new
chr16	3947608	3948829	ENSG00000262185.1|AC005736.1|lncRNA|chr16:3947608:3948829:-	0	-
#Deleted in new
chr16	3953386	3953516	ENSG00000162104.9|ADCY9|pc|chr16:3953386:3953516:-	0	-
#Partially deleted in new
chr16	396724	397079	ENSG00000103202.12|NME4|pc|chr16:396724:397079:+	0	+
#Partially deleted in new
chr16	396768	397079	ENSG00000103202.12|NME4|pc|chr16:396768:397079:+	0	+
#Deleted in new
chr16	397741	398179	ENSG00000103202.12|NME4|pc|chr16:397741:398179:+	0	+
#Deleted in new
chr16	397878	397902	ENSG00000103202.12|NME4|pc|chr16:397878:397902:+	0	+
#Partially deleted in new
chr16	3981772	3984150	ENSG00000162104.9|ADCY9|pc|chr16:3981772:3984150:-	0	-
#Deleted in new
chr16	398207	398385	ENSG00000103202.12|NME4|pc|chr16:398207:398385:+	0	+
#Deleted in new
chr16	398207	398394	ENSG00000103202.12|NME4|pc|chr16:398207:398394:+	0	+
#Partially deleted in new
chr16	398207	399123	ENSG00000103202.12|NME4|pc|chr16:398207:399123:+	0	+
#Deleted in new
chr16	4015561	4015682	ENSG00000162104.9|ADCY9|pc|chr16:4015561:4015682:-	0	-
#Deleted in new
chr16	4032011	4032107	ENSG00000263159.1|AC005736.3|lncRNA|chr16:4032011:4032107:+	0	+
#Deleted in new
chr16	4032788	4032936	ENSG00000263159.1|AC005736.3|lncRNA|chr16:4032788:4032936:+	0	+
#Partially deleted in new
chr16	405512	405665	ENSG00000242612.6|DECR2|pc|chr16:405512:405665:+	0	+
#Partially deleted in new
chr16	406345	406833	ENSG00000242612.6|DECR2|pc|chr16:406345:406833:+	0	+
#Deleted in new
chr16	406684	406729	ENSG00000242612.6|DECR2|pc|chr16:406684:406729:+	0	+
#Deleted in new
chr16	406684	406777	ENSG00000103202.12|NME4|pc|chr16:406684:406777:+	0	+
#Deleted in new
chr16	406684	406833	ENSG00000242612.6|DECR2|pc|chr16:406684:406833:+	0	+
#Deleted in new
chr16	406684	406889	ENSG00000242612.6|DECR2|pc|chr16:406684:406889:+	0	+
#Partially deleted in new
chr16	406684	406952	ENSG00000242612.6|DECR2|pc|chr16:406684:406952:+	0	+
#Deleted in new
chr16	406703	406777	ENSG00000242612.6|DECR2|pc|chr16:406703:406777:+	0	+
#Deleted in new
chr16	406735	406833	ENSG00000242612.6|DECR2|pc|chr16:406735:406833:+	0	+
#Partially deleted in new
chr16	406833	406952	ENSG00000242612.6|DECR2|pc|chr16:406833:406952:+	0	+
#Partially deleted in new
chr16	409598	410367	ENSG00000242612.6|DECR2|pc|chr16:409598:410367:+	0	+
#Deleted in new
chr1	64105321	64107039	ENSG00000223949.6|ROR1-AS1|lncRNA|chr1:64105321:64107039:-	0	-
#Deleted in new
chr1	64108319	64108393	ENSG00000223949.6|ROR1-AS1|lncRNA|chr1:64108319:64108393:-	0	-
#Deleted in new
chr16	411889	411928	ENSG00000242612.6|DECR2|pc|chr16:411889:411928:+	0	+
#Deleted in new
chr16	411889	411976	ENSG00000242612.6|DECR2|pc|chr16:411889:411976:+	0	+
#Deleted in new
chr16	411889	412370	ENSG00000242612.6|DECR2|pc|chr16:411889:412370:+	0	+
#Deleted in new
chr16	411889	412481	ENSG00000242612.6|DECR2|pc|chr16:411889:412481:+	0	+
#Deleted in new
chr16	411889	412487	ENSG00000242612.6|DECR2|pc|chr16:411889:412487:+	0	+
#Deleted in new
chr1	6412417	6413282	ENSG00000069812.11|HES2|pc|chr1:6412417:6413282:-	0	-
#Deleted in new
chr1	6412999	6413282	ENSG00000069812.11|HES2|pc|chr1:6412999:6413282:-	0	-
#Deleted in new
chr1	6413049	6413282	ENSG00000069812.11|HES2|pc|chr1:6413049:6413282:-	0	-
#Deleted in new
chr1	64171208	64171297	ENSG00000223949.6|ROR1-AS1|lncRNA|chr1:64171208:64171297:-	0	-
#Deleted in new
chr16	4180116	4180311	ENSG00000263105.1|AC009171.2|lncRNA|chr16:4180116:4180311:-	0	-
#Deleted in new
chr16	4248251	4248428	ENSG00000262468.5|LINC01569|lncRNA|chr16:4248251:4248428:-	0	-
#Deleted in new
chr16	4251321	4251498	ENSG00000262468.5|LINC01569|lncRNA|chr16:4251321:4251498:-	0	-
#Deleted in new
chr16	4251321	4252034	ENSG00000262468.5|LINC01569|lncRNA|chr16:4251321:4252034:-	0	-
#Deleted in new
chr16	4268047	4268081	ENSG00000090447.11|TFAP4|pc|chr16:4268047:4268081:-	0	-
#Deleted in new
chr16	4326429	4326494	ENSG00000262686.1|GLIS2-AS1|lncRNA|chr16:4326429:4326494:-	0	-
#Deleted in new
chr16	4331548	4331774	ENSG00000217930.7|PAM16|pc|chr16:4331548:4331774:-	0	-
#Deleted in new
chr16	4341651	4341672	ENSG00000217930.7|PAM16|pc|chr16:4341651:4341672:-	0	-
#Deleted in new
chr16	4344058	4344133	ENSG00000217930.7|PAM16|pc|chr16:4344058:4344133:-	0	-
#Partially deleted in new
chr16	4346693	4348648	ENSG00000280063.1|AC012676.5|lncRNA|chr16:4346693:4348648:-	0	-
#Deleted in new
chr16	4355588	4355607	ENSG00000217930.7|PAM16|pc|chr16:4355588:4355607:-	0	-
#Deleted in new
chr16	4397317	4397450	ENSG00000262246.5|CORO7|pc|chr16:4397317:4397450:-	0	-
#Deleted in new
chr16	4420358	4420553	ENSG00000262246.5|CORO7|pc|chr16:4420358:4420553:-	0	-
#Deleted in new
chr16	4420471	4420494	ENSG00000103426.12|CORO7-PAM16|pc|chr16:4420471:4420494:-	0	-
#Partially deleted in new
chr16	4426901	4427380	ENSG00000277170.1|AC012676.3|lncRNA|chr16:4426901:4427380:+	0	+
#Deleted in new
chr1	6443033	6443169	ENSG00000231868.1|AL031848.1|lncRNA|chr1:6443033:6443169:-	0	-
#Partially deleted in new
chr16	4430521	4431103	ENSG00000277440.1|AC012676.4|lncRNA|chr16:4430521:4431103:+	0	+
#Deleted in new
chr16	4431598	4431672	ENSG00000103423.13|DNAJA3|pc|chr16:4431598:4431672:+	0	+
#Deleted in new
chr16	4431598	4431868	ENSG00000103423.13|DNAJA3|pc|chr16:4431598:4431868:+	0	+
#Deleted in new
chr16	4433845	4434102	ENSG00000103423.13|DNAJA3|pc|chr16:4433845:4434102:+	0	+
#Partially deleted in new
chr16	4440256	4441575	ENSG00000103423.13|DNAJA3|pc|chr16:4440256:4441575:+	0	+
#Partially deleted in new
chr16	4449553	4450497	ENSG00000103423.13|DNAJA3|pc|chr16:4449553:4450497:+	0	+
#Deleted in new
chr16	4471313	4471449	ENSG00000153406.13|NMRAL1|pc|chr16:4471313:4471449:-	0	-
#Deleted in new
chr16	4471356	4471449	ENSG00000153406.13|NMRAL1|pc|chr16:4471356:4471449:-	0	-
#Partially deleted in new
chr16	4474092	4474792	ENSG00000153406.13|NMRAL1|pc|chr16:4474092:4474792:-	0	-
#Deleted in new
chr16	4474409	4474455	ENSG00000153406.13|NMRAL1|pc|chr16:4474409:4474455:-	0	-
#Deleted in new
chr16	4474409	4474542	ENSG00000153406.13|NMRAL1|pc|chr16:4474409:4474542:-	0	-
#Deleted in new
chr16	4474409	4474555	ENSG00000153406.13|NMRAL1|pc|chr16:4474409:4474555:-	0	-
#Deleted in new
chr16	4474409	4474622	ENSG00000153406.13|NMRAL1|pc|chr16:4474409:4474622:-	0	-
#Deleted in new
chr16	4474422	4474556	ENSG00000153406.13|NMRAL1|pc|chr16:4474422:4474556:-	0	-
#Deleted in new
chr16	4474422	4474643	ENSG00000153406.13|NMRAL1|pc|chr16:4474422:4474643:-	0	-
#Deleted in new
chr16	4474553	4474625	ENSG00000153406.13|NMRAL1|pc|chr16:4474553:4474625:-	0	-
#Deleted in new
chr16	4474553	4474651	ENSG00000153406.13|NMRAL1|pc|chr16:4474553:4474651:-	0	-
#Deleted in new
chr16	4474553	4474792	ENSG00000153406.13|NMRAL1|pc|chr16:4474553:4474792:-	0	-
#Deleted in new
chr16	4474553	4474895	ENSG00000153406.13|NMRAL1|pc|chr16:4474553:4474895:-	0	-
#Deleted in new
chr16	4474683	4474792	ENSG00000153406.13|NMRAL1|pc|chr16:4474683:4474792:-	0	-
#Deleted in new
chr16	4474689	4474847	ENSG00000103415.11|HMOX2|pc|chr16:4474689:4474847:+	0	+
#Deleted in new
chr16	4474702	4474847	ENSG00000103415.11|HMOX2|pc|chr16:4474702:4474847:+	0	+
#Partially deleted in new
chr16	4475923	4476487	ENSG00000103415.11|HMOX2|pc|chr16:4475923:4476487:+	0	+
#Deleted in new
chr16	4476236	4476297	ENSG00000153406.13|NMRAL1|pc|chr16:4476236:4476297:-	0	-
#Deleted in new
chr16	4476236	4476306	ENSG00000153406.13|NMRAL1|pc|chr16:4476236:4476306:-	0	-
#Deleted in new
chr16	4481763	4481879	ENSG00000153406.13|NMRAL1|pc|chr16:4481763:4481879:-	0	-
#Deleted in new
chr16	4483636	4483738	ENSG00000103415.11|HMOX2|pc|chr16:4483636:4483738:+	0	+
#Deleted in new
chr16	4483636	4483754	ENSG00000103415.11|HMOX2|pc|chr16:4483636:4483754:+	0	+
#Deleted in new
chr16	4488643	4488742	ENSG00000103415.11|HMOX2|pc|chr16:4488643:4488742:+	0	+
#Deleted in new
chr16	4502743	4502959	ENSG00000103415.11|HMOX2|pc|chr16:4502743:4502959:+	0	+
#Deleted in new
chr1	64505914	64506487	ENSG00000158966.13|CACHD1|pc|chr1:64505914:64506487:+	0	+
#Partially deleted in new
chr16	4514574	4515109	ENSG00000089486.16|CDIP1|pc|chr16:4514574:4515109:-	0	-
#Partially deleted in new
chr16	4560000	4561662	ENSG00000261789.1|AC023830.2|lncRNA|chr16:4560000:4561662:-	0	-
#Deleted in new
chr1	64613487	64613518	ENSG00000158966.13|CACHD1|pc|chr1:64613487:64613518:+	0	+
#Deleted in new
chr16	4634328	4635031	ENSG00000261442.1|AC023830.1|lncRNA|chr16:4634328:4635031:-	0	-
#Deleted in new
chr1	6463535	6463560	ENSG00000215788.9|TNFRSF25|pc|chr1:6463535:6463560:-	0	-
#Deleted in new
chr16	4639783	4640623	ENSG00000261442.1|AC023830.1|lncRNA|chr16:4639783:4640623:-	0	-
#Partially deleted in new
chr16	46406	47557	ENSG00000161980.5|POLR3K|pc|chr16:46406:47557:-	0	-
#Deleted in new
chr16	4664068	4664286	ENSG00000102858.12|MGRN1|pc|chr16:4664068:4664286:+	0	+
#Partially deleted in new
chr16	46656131	46660651	ENSG00000069329.16|VPS35|pc|chr16:46656131:46660651:-	0	-
#Deleted in new
chr16	46661528	46661591	ENSG00000261131.1|AC012186.2|lncRNA|chr16:46661528:46661591:-	0	-
#Partially deleted in new
chr16	46693092	46694519	ENSG00000091651.8|ORC6|pc|chr16:46693092:46694519:+	0	+
#Partially deleted in new
chr16	46703368	46707763	ENSG00000140795.12|MYLK3|pc|chr16:46703368:46707763:-	0	-
#Deleted in new
chr16	46711586	46711790	ENSG00000140795.12|MYLK3|pc|chr16:46711586:46711790:-	0	-
#Deleted in new
chr16	4672399	4672516	ENSG00000102858.12|MGRN1|pc|chr16:4672399:4672516:+	0	+
#Partially deleted in new
chr16	46725775	46727377	ENSG00000140795.12|MYLK3|pc|chr16:46725775:46727377:-	0	-
#Deleted in new
chr16	46740056	46740147	ENSG00000140795.12|MYLK3|pc|chr16:46740056:46740147:-	0	-
#Deleted in new
chr16	4676920	4677326	ENSG00000102858.12|MGRN1|pc|chr16:4676920:4677326:+	0	+
#Partially deleted in new
chr16	46796606	46803070	ENSG00000155330.9|C16orf87|pc|chr16:46796606:46803070:-	0	-
#Partially deleted in new
chr16	46915297	46916707	ENSG00000166123.13|GPT2|pc|chr16:46915297:46916707:+	0	+
#Deleted in new
chr16	46978604	46978983	ENSG00000261173.1|AC018845.3|lncRNA|chr16:46978604:46978983:+	0	+
#Partially deleted in new
chr16	4698799	4700170	ENSG00000168096.14|ANKS3|pc|chr16:4698799:4700170:-	0	-
#Partially deleted in new
chr16	4699051	4700303	ENSG00000168096.14|ANKS3|pc|chr16:4699051:4700303:-	0	-
#Deleted in new
chr16	4699504	4699707	ENSG00000168096.14|ANKS3|pc|chr16:4699504:4699707:-	0	-
#Partially deleted in new
chr16	4699753	4701134	ENSG00000168096.14|ANKS3|pc|chr16:4699753:4701134:-	0	-
#Deleted in new
chr16	47004512	47004768	ENSG00000259821.1|AC018845.1|lncRNA|chr16:47004512:47004768:+	0	+
#Deleted in new
chr16	47034993	47035385	ENSG00000259821.1|AC018845.1|lncRNA|chr16:47034993:47035385:+	0	+
#Partially deleted in new
chr16	47153631	47153796	ENSG00000260281.5|ITFG1-AS1|lncRNA|chr16:47153631:47153796:+	0	+
#Deleted in new
chr16	4717438	4717553	ENSG00000168096.14|ANKS3|pc|chr16:4717438:4717553:-	0	-
#Deleted in new
chr16	4717442	4717547	ENSG00000168096.14|ANKS3|pc|chr16:4717442:4717547:-	0	-
#Deleted in new
chr16	47196310	47196719	ENSG00000260744.1|AC007494.2|lncRNA|chr16:47196310:47196719:+	0	+
#Deleted in new
chr16	47202074	47202429	ENSG00000260744.1|AC007494.2|lncRNA|chr16:47202074:47202429:+	0	+
#Partially deleted in new
chr16	4726978	4728078	ENSG00000168096.14|ANKS3|pc|chr16:4726978:4728078:-	0	-
#Deleted in new
chr16	47299446	47299948	ENSG00000261369.1|AC007533.1|lncRNA|chr16:47299446:47299948:+	0	+
#Deleted in new
chr16	47312638	47312740	ENSG00000261369.1|AC007533.1|lncRNA|chr16:47312638:47312740:+	0	+
#Deleted in new
chr16	4731511	4731579	ENSG00000168096.14|ANKS3|pc|chr16:4731511:4731579:-	0	-
#Deleted in new
chr16	47317548	47317814	ENSG00000261369.1|AC007533.1|lncRNA|chr16:47317548:47317814:+	0	+
#Partially deleted in new
chr16	4734271	4734698	ENSG00000166246.13|C16orf71|pc|chr16:4734271:4734698:+	0	+
#Deleted in new
chr16	4734343	4734372	ENSG00000166246.13|C16orf71|pc|chr16:4734343:4734372:+	0	+
#Deleted in new
chr16	4734479	4734698	ENSG00000166246.13|C16orf71|pc|chr16:4734479:4734698:+	0	+
#Deleted in new
chr16	4734501	4734698	ENSG00000166246.13|C16orf71|pc|chr16:4734501:4734698:+	0	+
#Deleted in new
chr16	47425783	47426348	ENSG00000129636.12|ITFG1|pc|chr16:47425783:47426348:-	0	-
#Deleted in new
chr16	47462340	47462452	ENSG00000102893.15|PHKB|pc|chr16:47462340:47462452:+	0	+
#Split in new
chr16	4748238	4753058	ENSG00000103199.13|ZNF500|pc|chr16:4748238:4753058:-	0	-
#Partially deleted in new
chr16	4748243	4748410	ENSG00000103199.13|ZNF500|pc|chr16:4748243:4748410:-	0	-
#Split in new
chr16	4750791	4753188	ENSG00000103199.13|ZNF500|pc|chr16:4750791:4753188:-	0	-
#Partially deleted in new
chr16	4750813	4751658	ENSG00000103199.13|ZNF500|pc|chr16:4750813:4751658:-	0	-
#Deleted in new
chr16	47529189	47529241	ENSG00000262038.1|AC007599.2|lncRNA|chr16:47529189:47529241:+	0	+
#Deleted in new
chr16	47529475	47529916	ENSG00000262038.1|AC007599.2|lncRNA|chr16:47529475:47529916:+	0	+
#Duplicated in new
chr16	47562397	47562495	ENSG00000102893.15|PHKB|pc|chr16:47562397:47562495:+	0	+
#Deleted in new
chr16	4758303	4758575	ENSG00000103199.13|ZNF500|pc|chr16:4758303:4758575:-	0	-
#Deleted in new
chr16	47590304	47590838	ENSG00000102893.15|PHKB|pc|chr16:47590304:47590838:+	0	+
#Deleted in new
chr16	47597803	47598036	ENSG00000102893.15|PHKB|pc|chr16:47597803:47598036:+	0	+
#Deleted in new
chr16	47619129	47619429	ENSG00000102893.15|PHKB|pc|chr16:47619129:47619429:+	0	+
#Deleted in new
chr16	4762270	4762335	ENSG00000103199.13|ZNF500|pc|chr16:4762270:4762335:-	0	-
#Deleted in new
chr16	4762572	4762713	ENSG00000103199.13|ZNF500|pc|chr16:4762572:4762713:-	0	-
#Deleted in new
chr16	4762572	4762756	ENSG00000103199.13|ZNF500|pc|chr16:4762572:4762756:-	0	-
#Deleted in new
chr16	4766926	4766972	ENSG00000103199.13|ZNF500|pc|chr16:4766926:4766972:-	0	-
#Deleted in new
chr16	4767016	4767216	ENSG00000103199.13|ZNF500|pc|chr16:4767016:4767216:-	0	-
#Deleted in new
chr16	4767016	4767218	ENSG00000103199.13|ZNF500|pc|chr16:4767016:4767218:-	0	-
#Deleted in new
chr16	4767510	4767624	ENSG00000103199.13|ZNF500|pc|chr16:4767510:4767624:-	0	-
#Deleted in new
chr16	47814629	47814743	ENSG00000261231.6|LINC02133|lncRNA|chr16:47814629:47814743:+	0	+
#Deleted in new
chr16	4784238	4784277	ENSG00000140623.13|SEPT12|pc|chr16:4784238:4784277:-	0	-
#Deleted in new
chr16	4788728	4788771	ENSG00000267795.5|SMIM22|pc|chr16:4788728:4788771:+	0	+
#Deleted in new
chr16	4789939	4790057	ENSG00000267795.5|SMIM22|pc|chr16:4789939:4790057:+	0	+
#Partially deleted in new
chr16	47907788	47908431	ENSG00000261231.6|LINC02133|lncRNA|chr16:47907788:47908431:+	0	+
#Deleted in new
chr16	4794951	4795076	ENSG00000267795.5|SMIM22|pc|chr16:4794951:4795076:+	0	+
#Deleted in new
chr16	48166909	48167366	ENSG00000121270.15|ABCC11|pc|chr16:48166909:48167366:-	0	-
#Deleted in new
chr16	48166910	48167366	ENSG00000121270.15|ABCC11|pc|chr16:48166910:48167366:-	0	-
#Deleted in new
chr16	48167152	48167238	ENSG00000261538.1|AC096996.2|lncRNA|chr16:48167152:48167238:-	0	-
#Deleted in new
chr16	48176000	48176043	ENSG00000121270.15|ABCC11|pc|chr16:48176000:48176043:-	0	-
#Deleted in new
chr16	48178596	48178686	ENSG00000121270.15|ABCC11|pc|chr16:48178596:48178686:-	0	-
#Deleted in new
chr16	48184439	48184626	ENSG00000121270.15|ABCC11|pc|chr16:48184439:48184626:-	0	-
#Duplicated in new
chr16	48187200	48187390	ENSG00000121270.15|ABCC11|pc|chr16:48187200:48187390:-	0	-
#Duplicated in new
chr16	48187200	48187427	ENSG00000121270.15|ABCC11|pc|chr16:48187200:48187427:-	0	-
#Deleted in new
chr16	48197970	48198067	ENSG00000121270.15|ABCC11|pc|chr16:48197970:48198067:-	0	-
#Deleted in new
chr16	48209352	48211199	ENSG00000121270.15|ABCC11|pc|chr16:48209352:48211199:-	0	-
#Deleted in new
chr16	48210947	48211199	ENSG00000121270.15|ABCC11|pc|chr16:48210947:48211199:-	0	-
#Deleted in new
chr16	48213442	48213550	ENSG00000121270.15|ABCC11|pc|chr16:48213442:48213550:-	0	-
#Deleted in new
chr16	48214880	48215029	ENSG00000121270.15|ABCC11|pc|chr16:48214880:48215029:-	0	-
#Deleted in new
chr16	48216113	48216287	ENSG00000121270.15|ABCC11|pc|chr16:48216113:48216287:-	0	-
#Deleted in new
chr16	48223557	48223707	ENSG00000121270.15|ABCC11|pc|chr16:48223557:48223707:-	0	-
#Deleted in new
chr16	48227805	48227964	ENSG00000121270.15|ABCC11|pc|chr16:48227805:48227964:-	0	-
#Deleted in new
chr16	48230436	48230573	ENSG00000121270.15|ABCC11|pc|chr16:48230436:48230573:-	0	-
#Deleted in new
chr16	48231822	48231939	ENSG00000121270.15|ABCC11|pc|chr16:48231822:48231939:-	0	-
#Deleted in new
chr16	48231822	48232271	ENSG00000121270.15|ABCC11|pc|chr16:48231822:48232271:-	0	-
#Deleted in new
chr16	48336392	48336498	ENSG00000102910.13|LONP2|pc|chr16:48336392:48336498:+	0	+
#Partially deleted in new
chr16	48343754	48346058	ENSG00000280067.1|AC023818.2|lncRNA|chr16:48343754:48346058:-	0	-
#Partially deleted in new
chr16	48351580	48357349	ENSG00000102910.13|LONP2|pc|chr16:48351580:48357349:+	0	+
#Deleted in new
chr16	48356664	48356710	ENSG00000102910.13|LONP2|pc|chr16:48356664:48356710:+	0	+
#Deleted in new
chr16	48392756	48392892	ENSG00000196470.11|SIAH1|pc|chr16:48392756:48392892:-	0	-
#Deleted in new
chr16	48416815	48417319	ENSG00000196470.11|SIAH1|pc|chr16:48416815:48417319:-	0	-
#Deleted in new
chr16	48559660	48559702	ENSG00000261267.1|AC026470.3|lncRNA|chr16:48559660:48559702:+	0	+
#Deleted in new
chr16	48560535	48560666	ENSG00000261267.1|AC026470.3|lncRNA|chr16:48560535:48560666:+	0	+
#Deleted in new
chr1	6485835	6485954	ENSG00000171680.21|PLEKHG5|pc|chr1:6485835:6485954:-	0	-
#Deleted in new
chr16	48587138	48587403	ENSG00000261267.1|AC026470.3|lncRNA|chr16:48587138:48587403:+	0	+
#Deleted in new
chr16	48603659	48603712	ENSG00000102921.7|N4BP1|pc|chr16:48603659:48603712:-	0	-
#Deleted in new
chr16	48619848	48620148	ENSG00000102921.7|N4BP1|pc|chr16:48619848:48620148:-	0	-
#Deleted in new
chr16	48620318	48620381	ENSG00000259912.1|AC023813.1|lncRNA|chr16:48620318:48620381:+	0	+
#Deleted in new
chr16	48623435	48623603	ENSG00000260086.2|AC007611.1|lncRNA|chr16:48623435:48623603:+	0	+
#Deleted in new
chr16	48623446	48623603	ENSG00000260086.2|AC007611.1|lncRNA|chr16:48623446:48623603:+	0	+
#Deleted in new
chr16	48623461	48623603	ENSG00000260086.2|AC007611.1|lncRNA|chr16:48623461:48623603:+	0	+
#Deleted in new
chr16	48637142	48637284	ENSG00000260052.1|AC023813.3|lncRNA|chr16:48637142:48637284:+	0	+
#Deleted in new
chr16	48638322	48638719	ENSG00000260052.1|AC023813.3|lncRNA|chr16:48638322:48638719:+	0	+
#Deleted in new
chr16	48640472	48641052	ENSG00000272545.1|AC023813.4|lncRNA|chr16:48640472:48641052:+	0	+
#Deleted in new
chr16	48671860	48672033	ENSG00000260086.2|AC007611.1|lncRNA|chr16:48671860:48672033:+	0	+
#Deleted in new
chr16	48671899	48672033	ENSG00000260086.2|AC007611.1|lncRNA|chr16:48671899:48672033:+	0	+
#Deleted in new
chr16	48672915	48673478	ENSG00000260086.2|AC007611.1|lncRNA|chr16:48672915:48673478:+	0	+
#Deleted in new
chr16	48676393	48676752	ENSG00000260086.2|AC007611.1|lncRNA|chr16:48676393:48676752:+	0	+
#Deleted in new
chr16	48744246	48744329	ENSG00000260086.2|AC007611.1|lncRNA|chr16:48744246:48744329:+	0	+
#Deleted in new
chr16	48744466	48744921	ENSG00000260086.2|AC007611.1|lncRNA|chr16:48744466:48744921:+	0	+
#Partially deleted in new
chr1	64875984	64876473	ENSG00000162434.11|JAK1|pc|chr1:64875984:64876473:-	0	-
#Deleted in new
chr1	6490444	6490570	ENSG00000171680.21|PLEKHG5|pc|chr1:6490444:6490570:-	0	-
#Deleted in new
chr1	6490444	6490580	ENSG00000171680.21|PLEKHG5|pc|chr1:6490444:6490580:-	0	-
#Deleted in new
chr1	6491636	6491700	ENSG00000171680.21|PLEKHG5|pc|chr1:6491636:6491700:-	0	-
#Partially deleted in new
chr16	49456773	49457269	ENSG00000263110.1|AC007861.2|lncRNA|chr16:49456773:49457269:+	0	+
#Partially deleted in new
chr16	49466105	49468481	ENSG00000261623.1|LINC02179|lncRNA|chr16:49466105:49468481:+	0	+
#Deleted in new
chr16	49468578	49469875	ENSG00000261623.1|LINC02179|lncRNA|chr16:49468578:49469875:+	0	+
#Deleted in new
chr16	4960563	4960741	ENSG00000118898.15|PPL|pc|chr16:4960563:4960741:-	0	-
#Deleted in new
chr1	64972224	64973112	ENSG00000226891.7|LINC01359|lncRNA|chr1:64972224:64973112:-	0	-
#Deleted in new
chr1	64972364	64973112	ENSG00000226891.7|LINC01359|lncRNA|chr1:64972364:64973112:-	0	-
#Deleted in new
chr16	497291	497448	ENSG00000090565.15|RAB11FIP3|pc|chr16:497291:497448:+	0	+
#Deleted in new
chr1	64974574	64974715	ENSG00000226891.7|LINC01359|lncRNA|chr1:64974574:64974715:-	0	-
#Deleted in new
chr1	64974610	64974715	ENSG00000226891.7|LINC01359|lncRNA|chr1:64974610:64974715:-	0	-
#Deleted in new
chr1	64974611	64974715	ENSG00000226891.7|LINC01359|lncRNA|chr1:64974611:64974715:-	0	-
#Deleted in new
chr1	64989434	64989494	ENSG00000226891.7|LINC01359|lncRNA|chr1:64989434:64989494:-	0	-
#Deleted in new
chr1	64989434	64990062	ENSG00000226891.7|LINC01359|lncRNA|chr1:64989434:64990062:-	0	-
#Deleted in new
chr1	64989434	64990841	ENSG00000226891.7|LINC01359|lncRNA|chr1:64989434:64990841:-	0	-
#Deleted in new
chr1	64991297	64991404	ENSG00000226891.7|LINC01359|lncRNA|chr1:64991297:64991404:-	0	-
#Deleted in new
chr1	64991297	64991441	ENSG00000226891.7|LINC01359|lncRNA|chr1:64991297:64991441:-	0	-
#Deleted in new
chr1	64991297	64993012	ENSG00000226891.7|LINC01359|lncRNA|chr1:64991297:64993012:-	0	-
#Deleted in new
chr1	64992748	64992889	ENSG00000226891.7|LINC01359|lncRNA|chr1:64992748:64992889:-	0	-
#Deleted in new
chr1	64993002	64993581	ENSG00000226891.7|LINC01359|lncRNA|chr1:64993002:64993581:-	0	-
#Deleted in new
chr1	64993202	64993355	ENSG00000226891.7|LINC01359|lncRNA|chr1:64993202:64993355:-	0	-
#Deleted in new
chr1	64993471	64993581	ENSG00000226891.7|LINC01359|lncRNA|chr1:64993471:64993581:-	0	-
#Deleted in new
chr1	64993476	64993581	ENSG00000226891.7|LINC01359|lncRNA|chr1:64993476:64993581:-	0	-
#Deleted in new
chr1	65002328	65002450	ENSG00000226891.7|LINC01359|lncRNA|chr1:65002328:65002450:-	0	-
#Deleted in new
chr1	65002328	65002472	ENSG00000226891.7|LINC01359|lncRNA|chr1:65002328:65002472:-	0	-
#Deleted in new
chr1	65002328	65002476	ENSG00000226891.7|LINC01359|lncRNA|chr1:65002328:65002476:-	0	-
#Deleted in new
chr1	65002328	65002489	ENSG00000226891.7|LINC01359|lncRNA|chr1:65002328:65002489:-	0	-
#Deleted in new
chr1	65002408	65002437	ENSG00000226891.7|LINC01359|lncRNA|chr1:65002408:65002437:-	0	-
#Deleted in new
chr16	50026698	50026859	ENSG00000205423.11|CNEP1R1|pc|chr16:50026698:50026859:+	0	+
#Partially deleted in new
chr16	50034101	50034668	ENSG00000205423.11|CNEP1R1|pc|chr16:50034101:50034668:+	0	+
#Deleted in new
chr16	50064690	50064807	ENSG00000259843.2|AC007610.1|lncRNA|chr16:50064690:50064807:-	0	-
#Partially deleted in new
chr16	50072861	50074986	ENSG00000279356.1|AC007610.4|lncRNA|chr16:50072861:50074986:+	0	+
#Deleted in new
chr16	50121818	50121943	ENSG00000260381.2|AC007610.2|lncRNA|chr16:50121818:50121943:-	0	-
#Deleted in new
chr16	50279526	50279704	ENSG00000121281.12|ADCY7|pc|chr16:50279526:50279704:+	0	+
#Partially deleted in new
chr16	5028296	5028365	ENSG00000103174.11|NAGPA|pc|chr16:5028296:5028365:-	0	-
#Partially deleted in new
chr16	5028296	5028398	ENSG00000103174.11|NAGPA|pc|chr16:5028296:5028398:-	0	-
#Deleted in new
chr16	50289220	50289313	ENSG00000121281.12|ADCY7|pc|chr16:50289220:50289313:+	0	+
#Deleted in new
chr16	50310453	50310515	ENSG00000121281.12|ADCY7|pc|chr16:50310453:50310515:+	0	+
#Deleted in new
chr16	50310453	50310523	ENSG00000121281.12|ADCY7|pc|chr16:50310453:50310523:+	0	+
#Deleted in new
chr16	50310453	50310529	ENSG00000121281.12|ADCY7|pc|chr16:50310453:50310529:+	0	+
#Deleted in new
chr16	50349022	50349623	ENSG00000166164.15|BRD7|pc|chr16:50349022:50349623:-	0	-
#Deleted in new
chr16	50361791	50361833	ENSG00000166164.15|BRD7|pc|chr16:50361791:50361833:-	0	-
#Deleted in new
chr16	50371158	50371480	ENSG00000261393.1|AC007493.2|lncRNA|chr16:50371158:50371480:+	0	+
#Deleted in new
chr16	50421216	50421286	ENSG00000260573.2|AC007493.1|lncRNA|chr16:50421216:50421286:+	0	+
#Deleted in new
chr16	50493605	50493675	ENSG00000260573.2|AC007493.1|lncRNA|chr16:50493605:50493675:+	0	+
#Deleted in new
chr16	50495449	50495551	ENSG00000260573.2|AC007493.1|lncRNA|chr16:50495449:50495551:+	0	+
#Deleted in new
chr16	50668854	50669160	ENSG00000260249.2|AC007608.3|lncRNA|chr16:50668854:50669160:+	0	+
#Partially deleted in new
chr16	50670682	50670993	ENSG00000260249.2|AC007608.3|lncRNA|chr16:50670682:50670993:+	0	+
#Deleted in new
chr16	50671147	50671578	ENSG00000260249.2|AC007608.3|lncRNA|chr16:50671147:50671578:+	0	+
#Deleted in new
chr16	50671147	50671639	ENSG00000260249.2|AC007608.3|lncRNA|chr16:50671147:50671639:+	0	+
#Partially deleted in new
chr16	50671624	50674074	ENSG00000167208.14|SNX20|pc|chr16:50671624:50674074:-	0	-
#Deleted in new
chr16	50693602	50693662	ENSG00000167207.12|NOD2|pc|chr16:50693602:50693662:+	0	+
#Deleted in new
chr16	50693611	50693662	ENSG00000167207.12|NOD2|pc|chr16:50693611:50693662:+	0	+
#Deleted in new
chr16	50693625	50693662	ENSG00000167207.12|NOD2|pc|chr16:50693625:50693662:+	0	+
#Deleted in new
chr16	50727416	50728450	ENSG00000261644.2|AC007728.2|lncRNA|chr16:50727416:50728450:-	0	-
#Deleted in new
chr16	50729012	50729150	ENSG00000261644.2|AC007728.2|lncRNA|chr16:50729012:50729150:-	0	-
#Partially deleted in new
chr16	50807417	50807629	ENSG00000261703.1|LINC02168|lncRNA|chr16:50807417:50807629:+	0	+
#Partially deleted in new
chr16	5085362	5085732	ENSG00000118894.14|EEF2KMT|pc|chr16:5085362:5085732:-	0	-
#Deleted in new
chr16	50856613	50857308	ENSG00000260042.1|AC025810.1|lncRNA|chr16:50856613:50857308:-	0	-
#Partially deleted in new
chr16	50860195	50860370	ENSG00000261241.6|LINC02128|lncRNA|chr16:50860195:50860370:+	0	+
#Deleted in new
chr16	5086500	5087379	ENSG00000033011.11|ALG1|pc|chr16:5086500:5087379:+	0	+
#Deleted in new
chr16	50880208	50880261	ENSG00000261241.6|LINC02128|lncRNA|chr16:50880208:50880261:+	0	+
#Deleted in new
chr16	50881906	50884101	ENSG00000261241.6|LINC02128|lncRNA|chr16:50881906:50884101:+	0	+
#Deleted in new
chr16	50884208	50884322	ENSG00000261241.6|LINC02128|lncRNA|chr16:50884208:50884322:+	0	+
#Deleted in new
chr16	50884211	50884309	ENSG00000261241.6|LINC02128|lncRNA|chr16:50884211:50884309:+	0	+
#Deleted in new
chr16	50884481	50884741	ENSG00000261241.6|LINC02128|lncRNA|chr16:50884481:50884741:+	0	+
#Deleted in new
chr16	50884481	50884747	ENSG00000261241.6|LINC02128|lncRNA|chr16:50884481:50884747:+	0	+
#Deleted in new
chr16	50893660	50893862	ENSG00000261241.6|LINC02128|lncRNA|chr16:50893660:50893862:+	0	+
#Deleted in new
chr16	5098738	5098985	ENSG00000267070.1|AC026458.2|lncRNA|chr16:5098738:5098985:+	0	+
#Deleted in new
chr16	51035117	51035450	ENSG00000260605.1|AC027688.1|lncRNA|chr16:51035117:51035450:-	0	-
#Deleted in new
chr16	51036596	51036743	ENSG00000260605.1|AC027688.1|lncRNA|chr16:51036596:51036743:-	0	-
#Deleted in new
chr16	51038070	51038119	ENSG00000260605.1|AC027688.1|lncRNA|chr16:51038070:51038119:-	0	-
#Deleted in new
chr16	51038709	51038764	ENSG00000260605.1|AC027688.1|lncRNA|chr16:51038709:51038764:-	0	-
#Partially deleted in new
chr16	51054727	51055197	ENSG00000260620.1|AC027688.2|lncRNA|chr16:51054727:51055197:-	0	-
#Deleted in new
chr16	5130220	5130318	ENSG00000267070.1|AC026458.2|lncRNA|chr16:5130220:5130318:+	0	+
#Deleted in new
chr16	5133273	5133379	ENSG00000267070.1|AC026458.2|lncRNA|chr16:5133273:5133379:+	0	+
#Deleted in new
chr16	5142515	5142595	ENSG00000267070.1|AC026458.2|lncRNA|chr16:5142515:5142595:+	0	+
#Partially deleted in new
chr1	65147669	65147763	ENSG00000162433.14|AK4|pc|chr1:65147669:65147763:+	0	+
#Deleted in new
chr1	65165931	65166019	ENSG00000162433.14|AK4|pc|chr1:65165931:65166019:+	0	+
#Deleted in new
chr16	51771563	51771672	ENSG00000260057.5|LINC01571|lncRNA|chr16:51771563:51771672:+	0	+
#Deleted in new
chr16	52005486	52005634	ENSG00000261190.5|C16orf97|lncRNA|chr16:52005486:52005634:-	0	-
#Deleted in new
chr16	52005489	52005634	ENSG00000261190.5|C16orf97|lncRNA|chr16:52005489:52005634:-	0	-
#Deleted in new
chr16	52005491	52007407	ENSG00000261190.5|C16orf97|lncRNA|chr16:52005491:52007407:-	0	-
#Deleted in new
chr16	52026988	52027047	ENSG00000261190.5|C16orf97|lncRNA|chr16:52026988:52027047:-	0	-
#Deleted in new
chr16	52074892	52074951	ENSG00000261190.5|C16orf97|lncRNA|chr16:52074892:52074951:-	0	-
#Deleted in new
chr16	52074892	52075011	ENSG00000261190.5|C16orf97|lncRNA|chr16:52074892:52075011:-	0	-
#Partially deleted in new
chr16	52081567	52082096	ENSG00000279779.1|AC009039.2|lncRNA|chr16:52081567:52082096:-	0	-
#Partially deleted in new
chr1	6521346	6526003	ENSG00000162408.10|NOL9|pc|chr1:6521346:6526003:-	0	-
#Deleted in new
chr16	5215393	5215444	ENSG00000261811.1|LINC02164|lncRNA|chr16:5215393:5215444:-	0	-
#Deleted in new
chr16	5215853	5215984	ENSG00000261811.1|LINC02164|lncRNA|chr16:5215853:5215984:-	0	-
#Deleted in new
chr16	52198011	52198509	ENSG00000260975.1|AC007333.2|lncRNA|chr16:52198011:52198509:-	0	-
#Deleted in new
chr16	52227895	52227956	ENSG00000260975.1|AC007333.2|lncRNA|chr16:52227895:52227956:-	0	-
#Deleted in new
chr16	52240191	52240243	ENSG00000260478.1|AC007333.1|lncRNA|chr16:52240191:52240243:+	0	+
#Deleted in new
chr16	52243403	52243506	ENSG00000260478.1|AC007333.1|lncRNA|chr16:52243403:52243506:+	0	+
#Deleted in new
chr16	52269127	52269440	ENSG00000260478.1|AC007333.1|lncRNA|chr16:52269127:52269440:+	0	+
#Deleted in new
chr16	52279608	52279690	ENSG00000260887.2|CASC22|lncRNA|chr16:52279608:52279690:+	0	+
#Deleted in new
chr16	52279608	52279742	ENSG00000260887.2|CASC22|lncRNA|chr16:52279608:52279742:+	0	+
#Partially deleted in new
chr16	52280269	52280638	ENSG00000260887.2|CASC22|lncRNA|chr16:52280269:52280638:+	0	+
#Deleted in new
chr16	525154	527407	ENSG00000277142.1|Z98882.1|lncRNA|chr16:525154:527407:-	0	-
#Deleted in new
chr16	52554063	52554179	ENSG00000249231.7|CASC16|lncRNA|chr16:52554063:52554179:-	0	-
#Deleted in new
chr16	52590935	52591067	ENSG00000249231.7|CASC16|lncRNA|chr16:52590935:52591067:-	0	-
#Deleted in new
chr16	53035689	53035961	ENSG00000277639.2|AC007906.2|pc|chr16:53035689:53035961:-	0	-
#Deleted in new
chr16	53047204	53047283	ENSG00000277639.2|AC007906.2|pc|chr16:53047204:53047283:-	0	-
#Deleted in new
chr1	65306432	65306521	ENSG00000229294.1|AL139294.1|lncRNA|chr1:65306432:65306521:-	0	-
#Deleted in new
chr16	53168521	53168762	ENSG00000261291.1|AC007906.1|lncRNA|chr16:53168521:53168762:+	0	+
#Deleted in new
chr16	53169181	53169450	ENSG00000261291.1|AC007906.1|lncRNA|chr16:53169181:53169450:+	0	+
#Partially deleted in new
chr16	53247292	53248163	ENSG00000177200.16|CHD9|pc|chr16:53247292:53248163:+	0	+
#Duplicated in new
chr16	53250350	53250649	ENSG00000177200.16|CHD9|pc|chr16:53250350:53250649:+	0	+
#Partially deleted in new
chr16	53310796	53311989	ENSG00000279589.1|AC079416.2|lncRNA|chr16:53310796:53311989:+	0	+
#Deleted in new
chr16	53321162	53321217	ENSG00000177200.16|CHD9|pc|chr16:53321162:53321217:+	0	+
#Deleted in new
chr16	53378455	53378604	ENSG00000261804.1|AC007342.4|lncRNA|chr16:53378455:53378604:+	0	+
#Deleted in new
chr16	53378491	53378604	ENSG00000261804.1|AC007342.4|lncRNA|chr16:53378491:53378604:+	0	+
#Deleted in new
chr16	53384173	53384259	ENSG00000261804.1|AC007342.4|lncRNA|chr16:53384173:53384259:+	0	+
#Deleted in new
chr16	53384173	53384745	ENSG00000261804.1|AC007342.4|lncRNA|chr16:53384173:53384745:+	0	+
#Deleted in new
chr16	53386943	53389085	ENSG00000262714.1|AC007342.5|lncRNA|chr16:53386943:53389085:+	0	+
#Partially deleted in new
chr16	53389885	53390563	ENSG00000279741.1|AC007342.8|lncRNA|chr16:53389885:53390563:+	0	+
#Deleted in new
chr16	53391088	53392473	ENSG00000280027.1|AC007342.9|lncRNA|chr16:53391088:53392473:+	0	+
#Deleted in new
chr16	53449492	53449590	ENSG00000259926.1|AC007342.1|lncRNA|chr16:53449492:53449590:+	0	+
#Deleted in new
chr16	53454225	53454347	ENSG00000103479.15|RBL2|pc|chr16:53454225:53454347:+	0	+
#Partially deleted in new
chr16	53487606	53489943	ENSG00000279722.1|AC007342.7|lncRNA|chr16:53487606:53489943:-	0	-
#Partially deleted in new
chr16	53501105	53501488	ENSG00000166971.16|AKTIP|pc|chr16:53501105:53501488:-	0	-
#Deleted in new
chr16	536028	536142	ENSG00000103326.11|CAPN15|pc|chr16:536028:536142:+	0	+
#Deleted in new
chr16	53622218	53622356	ENSG00000103494.12|RPGRIP1L|pc|chr16:53622218:53622356:-	0	-
#Deleted in new
chr16	53635440	53635623	ENSG00000103494.12|RPGRIP1L|pc|chr16:53635440:53635623:-	0	-
#Partially deleted in new
chr16	53653450	53653518	ENSG00000103494.12|RPGRIP1L|pc|chr16:53653450:53653518:-	0	-
#Deleted in new
chr16	53655527	53655599	ENSG00000103494.12|RPGRIP1L|pc|chr16:53655527:53655599:-	0	-
#Deleted in new
chr16	536861	536895	ENSG00000103326.11|CAPN15|pc|chr16:536861:536895:+	0	+
#Deleted in new
chr16	537133	537639	ENSG00000103326.11|CAPN15|pc|chr16:537133:537639:+	0	+
#Partially deleted in new
chr16	537133	539858	ENSG00000103326.11|CAPN15|pc|chr16:537133:539858:+	0	+
#Deleted in new
chr16	53887868	53887916	ENSG00000140718.20|FTO|pc|chr16:53887868:53887916:+	0	+
#Deleted in new
chr16	53956682	53956789	ENSG00000140718.20|FTO|pc|chr16:53956682:53956789:+	0	+
#Deleted in new
chr16	53979370	53979499	ENSG00000140718.20|FTO|pc|chr16:53979370:53979499:+	0	+
#Deleted in new
chr16	53981228	53981512	ENSG00000261630.1|AC007496.2|lncRNA|chr16:53981228:53981512:-	0	-
#Deleted in new
chr16	53981649	53981912	ENSG00000261630.1|AC007496.2|lncRNA|chr16:53981649:53981912:-	0	-
#Deleted in new
chr16	54013377	54013511	ENSG00000140718.20|FTO|pc|chr16:54013377:54013511:+	0	+
#Deleted in new
chr16	54033996	54034111	ENSG00000261049.2|AC007347.1|lncRNA|chr16:54033996:54034111:-	0	-
#Partially deleted in new
chr16	54118380	54118806	ENSG00000140718.20|FTO|pc|chr16:54118380:54118806:+	0	+
#Deleted in new
chr16	54157113	54158512	ENSG00000140718.20|FTO|pc|chr16:54157113:54158512:+	0	+
#Deleted in new
chr16	54245617	54245801	ENSG00000259517.2|LINC02169|lncRNA|chr16:54245617:54245801:-	0	-
#Deleted in new
chr16	54270514	54270746	ENSG00000259517.2|LINC02169|lncRNA|chr16:54270514:54270746:-	0	-
#Deleted in new
chr1	65427781	65428009	ENSG00000213625.8|LEPROT|pc|chr1:65427781:65428009:+	0	+
#Deleted in new
chr16	54556006	54556175	ENSG00000283304.1|LINC02183|lncRNA|chr16:54556006:54556175:-	0	-
#Deleted in new
chr16	54559045	54559100	ENSG00000283304.1|LINC02183|lncRNA|chr16:54559045:54559100:-	0	-
#Deleted in new
chr16	54845188	54845421	ENSG00000245694.9|CRNDE|lncRNA|chr16:54845188:54845421:-	0	-
#Deleted in new
chr16	54848140	54848233	ENSG00000245694.9|CRNDE|lncRNA|chr16:54848140:54848233:-	0	-
#Deleted in new
chr16	54848140	54848278	ENSG00000245694.9|CRNDE|lncRNA|chr16:54848140:54848278:-	0	-
#Deleted in new
chr16	54853437	54853568	ENSG00000245694.9|CRNDE|lncRNA|chr16:54853437:54853568:-	0	-
#Deleted in new
chr1	65486405	65486506	ENSG00000237852.1|AC119800.1|lncRNA|chr1:65486405:65486506:+	0	+
#Deleted in new
chr16	54874054	54874168	ENSG00000245694.9|CRNDE|lncRNA|chr16:54874054:54874168:-	0	-
#Partially deleted in new
chr16	54959	55549	ENSG00000161981.10|SNRNP25|pc|chr16:54959:55549:+	0	+
#Deleted in new
chr1	65525688	65525818	ENSG00000116678.19|LEPR|pc|chr1:65525688:65525818:+	0	+
#Deleted in new
chr16	55259968	55260429	ENSG00000259283.2|AC109462.2|lncRNA|chr16:55259968:55260429:-	0	-
#Deleted in new
chr16	55282537	55282664	ENSG00000259283.2|AC109462.2|lncRNA|chr16:55282537:55282664:-	0	-
#Partially deleted in new
chr16	55332354	55332967	ENSG00000263207.2|AC109462.3|lncRNA|chr16:55332354:55332967:+	0	+
#Deleted in new
chr16	55426796	55426970	ENSG00000260135.6|MMP2-AS1|lncRNA|chr16:55426796:55426970:-	0	-
#Deleted in new
chr16	55427500	55427951	ENSG00000260135.6|MMP2-AS1|lncRNA|chr16:55427500:55427951:-	0	-
#Deleted in new
chr16	55427557	55427584	ENSG00000260135.6|MMP2-AS1|lncRNA|chr16:55427557:55427584:-	0	-
#Deleted in new
chr16	55446863	55446948	ENSG00000260135.6|MMP2-AS1|lncRNA|chr16:55446863:55446948:-	0	-
#Partially deleted in new
chr16	55452771	55452860	ENSG00000260135.6|MMP2-AS1|lncRNA|chr16:55452771:55452860:-	0	-
#Deleted in new
chr16	55462174	55462297	ENSG00000260135.6|MMP2-AS1|lncRNA|chr16:55462174:55462297:-	0	-
#Deleted in new
chr16	55464551	55464825	ENSG00000087245.12|MMP2|pc|chr16:55464551:55464825:+	0	+
#Partially deleted in new
chr16	55481556	55481878	ENSG00000087245.12|MMP2|pc|chr16:55481556:55481878:+	0	+
#Partially deleted in new
chr16	55812335	55812430	ENSG00000198848.12|CES1|pc|chr16:55812335:55812430:-	0	-
#Deleted in new
chr16	55925322	55925426	ENSG00000159398.15|CES5A|pc|chr16:55925322:55925426:-	0	-
#Deleted in new
chr16	55925322	55925460	ENSG00000159398.15|CES5A|pc|chr16:55925322:55925460:-	0	-
#Deleted in new
chr16	55949784	55949902	ENSG00000159398.15|CES5A|pc|chr16:55949784:55949902:-	0	-
#Deleted in new
chr16	5601168	5601664	ENSG00000260338.1|LINC01570|lncRNA|chr16:5601168:5601664:-	0	-
#Deleted in new
chr16	56092986	56093518	ENSG00000246379.6|AC007495.1|lncRNA|chr16:56092986:56093518:-	0	-
#Deleted in new
chr16	56101045	56101212	ENSG00000246379.6|AC007495.1|lncRNA|chr16:56101045:56101212:-	0	-
#Deleted in new
chr16	5610299	5610674	ENSG00000260338.1|LINC01570|lncRNA|chr16:5610299:5610674:-	0	-
#Deleted in new
chr16	56124973	56125036	ENSG00000260041.5|AC007495.2|lncRNA|chr16:56124973:56125036:+	0	+
#Deleted in new
chr16	56143698	56144012	ENSG00000246379.6|AC007495.1|lncRNA|chr16:56143698:56144012:-	0	-
#Deleted in new
chr16	5616125	5616196	ENSG00000260338.1|LINC01570|lncRNA|chr16:5616125:5616196:-	0	-
#Partially deleted in new
chr16	56187073	56187700	ENSG00000246379.6|AC007495.1|lncRNA|chr16:56187073:56187700:-	0	-
#Deleted in new
chr16	56187602	56187700	ENSG00000246379.6|AC007495.1|lncRNA|chr16:56187602:56187700:-	0	-
#Deleted in new
chr16	56188040	56188078	ENSG00000246379.6|AC007495.1|lncRNA|chr16:56188040:56188078:-	0	-
#Deleted in new
chr16	56255520	56255591	ENSG00000087258.14|GNAO1|pc|chr16:56255520:56255591:+	0	+
#Deleted in new
chr16	56301702	56302904	ENSG00000260198.1|AC009102.1|lncRNA|chr16:56301702:56302904:+	0	+
#Deleted in new
chr1	65630201	65630422	ENSG00000116678.19|LEPR|pc|chr1:65630201:65630422:+	0	+
#Deleted in new
chr16	56388757	56388853	ENSG00000159461.14|AMFR|pc|chr16:56388757:56388853:-	0	-
#Deleted in new
chr16	56411428	56411683	ENSG00000260621.1|AC092140.1|lncRNA|chr16:56411428:56411683:+	0	+
#Deleted in new
chr16	56439126	56439496	ENSG00000167005.13|NUDT21|pc|chr16:56439126:56439496:-	0	-
#Partially deleted in new
chr16	56476043	56477129	ENSG00000087263.16|OGFOD1|pc|chr16:56476043:56477129:+	0	+
#Partially deleted in new
chr16	56509356	56509967	ENSG00000125124.11|BBS2|pc|chr16:56509356:56509967:-	0	-
#Deleted in new
chr16	56589073	56589189	ENSG00000087250.8|MT3|pc|chr16:56589073:56589189:+	0	+
#Partially deleted in new
chr16	56609500	56609884	ENSG00000260823.1|AC026461.3|lncRNA|chr16:56609500:56609884:-	0	-
#Deleted in new
chr16	56611315	56611375	ENSG00000260823.1|AC026461.3|lncRNA|chr16:56611315:56611375:-	0	-
#Partially deleted in new
chr16	56648880	56649004	ENSG00000259923.1|AC026461.2|lncRNA|chr16:56648880:56649004:+	0	+
#Partially deleted in new
chr16	56660421	56660698	ENSG00000198417.6|MT1F|pc|chr16:56660421:56660698:+	0	+
#Deleted in new
chr16	56677070	56677114	ENSG00000275691.1|AC026461.4|pc|chr16:56677070:56677114:+	0	+
#Partially deleted in new
chr16	56683164	56683603	ENSG00000187193.8|MT1X|pc|chr16:56683164:56683603:+	0	+
#Deleted in new
chr16	56708771	56709245	ENSG00000261302.5|AC106779.1|lncRNA|chr16:56708771:56709245:-	0	-
#Deleted in new
chr16	56709224	56709245	ENSG00000261302.5|AC106779.1|lncRNA|chr16:56709224:56709245:-	0	-
#Deleted in new
chr16	56709913	56709994	ENSG00000261302.5|AC106779.1|lncRNA|chr16:56709913:56709994:-	0	-
#Deleted in new
chr16	56709913	56710177	ENSG00000261302.5|AC106779.1|lncRNA|chr16:56709913:56710177:-	0	-
#Deleted in new
chr16	56740713	56740873	ENSG00000102900.12|NUP93|pc|chr16:56740713:56740873:+	0	+
#Deleted in new
chr16	56741779	56741817	ENSG00000102900.12|NUP93|pc|chr16:56741779:56741817:+	0	+
#Duplicated in new
chr16	56839520	56839935	ENSG00000102900.12|NUP93|pc|chr16:56839520:56839935:+	0	+
#Deleted in new
chr16	56842577	56842695	ENSG00000102900.12|NUP93|pc|chr16:56842577:56842695:+	0	+
#Partially deleted in new
chr16	56936686	56937413	ENSG00000051108.14|HERPUD1|pc|chr16:56936686:56937413:+	0	+
#Partially deleted in new
chr16	56940277	56940401	ENSG00000261270.1|AC012181.3|lncRNA|chr16:56940277:56940401:+	0	+
#Deleted in new
chr16	56961849	56962097	ENSG00000087237.10|CETP|pc|chr16:56961849:56962097:+	0	+
#Deleted in new
chr16	56961922	56962097	ENSG00000087237.10|CETP|pc|chr16:56961922:56962097:+	0	+
#Deleted in new
chr16	56961981	56962097	ENSG00000087237.10|CETP|pc|chr16:56961981:56962097:+	0	+
#Deleted in new
chr16	56969385	56969520	ENSG00000087237.10|CETP|pc|chr16:56969385:56969520:+	0	+
#Deleted in new
chr16	56969610	56969681	ENSG00000087237.10|CETP|pc|chr16:56969610:56969681:+	0	+
#Deleted in new
chr16	56969913	56970001	ENSG00000087237.10|CETP|pc|chr16:56969913:56970001:+	0	+
#Deleted in new
chr16	56971991	56972083	ENSG00000087237.10|CETP|pc|chr16:56971991:56972083:+	0	+
#Deleted in new
chr16	56973330	56973368	ENSG00000087237.10|CETP|pc|chr16:56973330:56973368:+	0	+
#Deleted in new
chr16	56973330	56973510	ENSG00000087237.10|CETP|pc|chr16:56973330:56973510:+	0	+
#Deleted in new
chr16	56975100	56975151	ENSG00000087237.10|CETP|pc|chr16:56975100:56975151:+	0	+
#Deleted in new
chr16	56981157	56981225	ENSG00000087237.10|CETP|pc|chr16:56981157:56981225:+	0	+
#Deleted in new
chr16	56981646	56981680	ENSG00000087237.10|CETP|pc|chr16:56981646:56981680:+	0	+
#Deleted in new
chr16	56991914	56992444	ENSG00000140853.15|NLRC5|pc|chr16:56991914:56992444:+	0	+
#Deleted in new
chr16	57003852	57004095	ENSG00000140853.15|NLRC5|pc|chr16:57003852:57004095:+	0	+
#Partially deleted in new
chr16	57004485	57004583	ENSG00000140853.15|NLRC5|pc|chr16:57004485:57004583:+	0	+
#Deleted in new
chr16	57017073	57017188	ENSG00000140853.15|NLRC5|pc|chr16:57017073:57017188:+	0	+
#Deleted in new
chr16	570300	570389	ENSG00000007541.16|PIGQ|pc|chr16:570300:570389:+	0	+
#Deleted in new
chr16	57062350	57062744	ENSG00000140853.15|NLRC5|pc|chr16:57062350:57062744:+	0	+
#Deleted in new
chr16	570647	570658	ENSG00000007541.16|PIGQ|pc|chr16:570647:570658:+	0	+
#Deleted in new
chr16	570647	570760	ENSG00000007541.16|PIGQ|pc|chr16:570647:570760:+	0	+
#Deleted in new
chr16	57075924	57076056	ENSG00000140853.15|NLRC5|pc|chr16:57075924:57076056:+	0	+
#Deleted in new
chr16	57075940	57076056	ENSG00000140853.15|NLRC5|pc|chr16:57075940:57076056:+	0	+
#Partially deleted in new
chr16	57123305	57125993	ENSG00000140848.16|CPNE2|pc|chr16:57123305:57125993:+	0	+
#Deleted in new
chr16	57124247	57124469	ENSG00000140848.16|CPNE2|pc|chr16:57124247:57124469:+	0	+
#Deleted in new
chr16	57125276	57125363	ENSG00000140848.16|CPNE2|pc|chr16:57125276:57125363:+	0	+
#Deleted in new
chr16	57129051	57129150	ENSG00000140848.16|CPNE2|pc|chr16:57129051:57129150:+	0	+
#Partially deleted in new
chr16	57174168	57174286	ENSG00000172775.16|FAM192A|pc|chr16:57174168:57174286:-	0	-
#Deleted in new
chr16	57178805	57178852	ENSG00000172775.16|FAM192A|pc|chr16:57178805:57178852:-	0	-
#Deleted in new
chr16	57181553	57181790	ENSG00000172775.16|FAM192A|pc|chr16:57181553:57181790:-	0	-
#Partially deleted in new
chr16	57219671	57220847	ENSG00000159579.13|RSPRY1|pc|chr16:57219671:57220847:+	0	+
#Deleted in new
chr16	57247349	57247457	ENSG00000260038.1|AC009090.1|lncRNA|chr16:57247349:57247457:+	0	+
#Deleted in new
chr16	57248242	57248492	ENSG00000260038.1|AC009090.1|lncRNA|chr16:57248242:57248492:+	0	+
#Deleted in new
chr16	572505	572601	ENSG00000007541.16|PIGQ|pc|chr16:572505:572601:+	0	+
#Deleted in new
chr16	57263268	57263371	ENSG00000102934.9|PLLP|pc|chr16:57263268:57263371:-	0	-
#Deleted in new
chr16	57404766	57404836	ENSG00000102970.10|CCL17|pc|chr16:57404766:57404836:+	0	+
#Partially deleted in new
chr16	57452800	57454304	ENSG00000088682.13|COQ9|pc|chr16:57452800:57454304:+	0	+
#Partially deleted in new
chr16	57463028	57463512	ENSG00000102978.12|POLR2C|pc|chr16:57463028:57463512:+	0	+
#Deleted in new
chr16	57463655	57464055	ENSG00000102978.12|POLR2C|pc|chr16:57463655:57464055:+	0	+
#Deleted in new
chr16	57487095	57487139	ENSG00000125170.10|DOK4|pc|chr16:57487095:57487139:-	0	-
#Deleted in new
chr16	57487130	57487327	ENSG00000125170.10|DOK4|pc|chr16:57487130:57487327:-	0	-
#Deleted in new
chr16	57487245	57487322	ENSG00000125170.10|DOK4|pc|chr16:57487245:57487322:-	0	-
#Deleted in new
chr16	57562383	57562459	ENSG00000159618.15|ADGRG5|pc|chr16:57562383:57562459:+	0	+
#Deleted in new
chr16	57562383	57562601	ENSG00000159618.15|ADGRG5|pc|chr16:57562383:57562601:+	0	+
#Partially deleted in new
chr16	57590611	57590770	ENSG00000159618.15|ADGRG5|pc|chr16:57590611:57590770:+	0	+
#Deleted in new
chr16	57622033	57622121	ENSG00000261633.1|AC018552.4|lncRNA|chr16:57622033:57622121:-	0	-
#Deleted in new
chr16	57627094	57627289	ENSG00000261633.1|AC018552.4|lncRNA|chr16:57627094:57627289:-	0	-
#Partially deleted in new
chr16	57631174	57631267	ENSG00000205336.11|ADGRG1|pc|chr16:57631174:57631267:+	0	+
#Deleted in new
chr16	57641586	57641610	ENSG00000205336.11|ADGRG1|pc|chr16:57641586:57641610:+	0	+
#Deleted in new
chr16	57641586	57641655	ENSG00000205336.11|ADGRG1|pc|chr16:57641586:57641655:+	0	+
#Deleted in new
chr16	57641586	57641708	ENSG00000205336.11|ADGRG1|pc|chr16:57641586:57641708:+	0	+
#Deleted in new
chr16	57641590	57641627	ENSG00000205336.11|ADGRG1|pc|chr16:57641590:57641627:+	0	+
#Deleted in new
chr16	57641590	57641708	ENSG00000205336.11|ADGRG1|pc|chr16:57641590:57641708:+	0	+
#Deleted in new
chr16	57651805	57652148	ENSG00000205336.11|ADGRG1|pc|chr16:57651805:57652148:+	0	+
#Deleted in new
chr16	57674588	57674649	ENSG00000182885.16|ADGRG3|pc|chr16:57674588:57674649:+	0	+
#Deleted in new
chr16	57696402	57696594	ENSG00000159625.14|DRC7|pc|chr16:57696402:57696594:+	0	+
#Deleted in new
chr16	57696463	57696594	ENSG00000159625.14|DRC7|pc|chr16:57696463:57696594:+	0	+
#Partially deleted in new
chr16	57701649	57701730	ENSG00000260467.1|AC018552.2|lncRNA|chr16:57701649:57701730:-	0	-
#Deleted in new
chr16	57776485	57776690	ENSG00000140859.15|KIFC3|pc|chr16:57776485:57776690:-	0	-
#Deleted in new
chr16	57776621	57776690	ENSG00000140859.15|KIFC3|pc|chr16:57776621:57776690:-	0	-
#Deleted in new
chr16	57779360	57779450	ENSG00000140859.15|KIFC3|pc|chr16:57779360:57779450:-	0	-
#Deleted in new
chr16	57779360	57779540	ENSG00000140859.15|KIFC3|pc|chr16:57779360:57779540:-	0	-
#Deleted in new
chr16	57779876	57779951	ENSG00000140859.15|KIFC3|pc|chr16:57779876:57779951:-	0	-
#Deleted in new
chr16	57779889	57779916	ENSG00000140859.15|KIFC3|pc|chr16:57779889:57779916:-	0	-
#Deleted in new
chr16	57790929	57791066	ENSG00000140859.15|KIFC3|pc|chr16:57790929:57791066:-	0	-
#Deleted in new
chr16	57807602	57807952	ENSG00000187185.4|AC092118.1|lncRNA|chr16:57807602:57807952:+	0	+
#Partially deleted in new
chr1	65793180	65793248	ENSG00000184588.17|PDE4B|pc|chr1:65793180:65793248:+	0	+
#Deleted in new
chr16	57949352	57949439	ENSG00000070729.13|CNGB1|pc|chr16:57949352:57949439:-	0	-
#Deleted in new
chr16	57986638	57986736	ENSG00000159648.11|TEPP|pc|chr16:57986638:57986736:+	0	+
#Partially deleted in new
chr16	58010662	58013557	ENSG00000103005.11|USB1|pc|chr16:58010662:58013557:+	0	+
#Partially deleted in new
chr16	58011017	58011708	ENSG00000103005.11|USB1|pc|chr16:58011017:58011708:+	0	+
#Deleted in new
chr16	58011441	58011475	ENSG00000103005.11|USB1|pc|chr16:58011441:58011475:+	0	+
#Partially deleted in new
chr16	58012320	58013558	ENSG00000103005.11|USB1|pc|chr16:58012320:58013558:+	0	+
#Partially deleted in new
chr16	58015112	58017439	ENSG00000103005.11|USB1|pc|chr16:58015112:58017439:+	0	+
#Duplicated in new
chr16	58020140	58020542	ENSG00000103005.11|USB1|pc|chr16:58020140:58020542:+	0	+
#Duplicated in new
chr16	58020140	58020634	ENSG00000103005.11|USB1|pc|chr16:58020140:58020634:+	0	+
#Deleted in new
chr16	581198	581341	ENSG00000007541.16|PIGQ|pc|chr16:581198:581341:+	0	+
#Deleted in new
chr16	58137950	58138050	ENSG00000260927.1|AC009107.2|lncRNA|chr16:58137950:58138050:+	0	+
#Deleted in new
chr16	58217552	58217805	ENSG00000260867.1|AC009107.1|lncRNA|chr16:58217552:58217805:+	0	+
#Deleted in new
chr16	58231156	58231214	ENSG00000103021.9|CCDC113|pc|chr16:58231156:58231214:+	0	+
#Partially deleted in new
chr16	582876	583922	ENSG00000007541.16|PIGQ|pc|chr16:582876:583922:+	0	+
#Partially deleted in new
chr16	582882	584083	ENSG00000007541.16|PIGQ|pc|chr16:582882:584083:+	0	+
#Partially deleted in new
chr16	582882	584094	ENSG00000007541.16|PIGQ|pc|chr16:582882:584094:+	0	+
#Partially deleted in new
chr16	582882	584108	ENSG00000007541.16|PIGQ|pc|chr16:582882:584108:+	0	+
#Partially deleted in new
chr16	582882	584109	ENSG00000007541.16|PIGQ|pc|chr16:582882:584109:+	0	+
#Partially deleted in new
chr16	582882	584136	ENSG00000007541.16|PIGQ|pc|chr16:582882:584136:+	0	+
#Deleted in new
chr16	58299885	58299973	ENSG00000181938.13|GINS3|pc|chr16:58299885:58299973:+	0	+
#Deleted in new
chr16	58329862	58329949	ENSG00000181938.13|GINS3|pc|chr16:58329862:58329949:+	0	+
#Deleted in new
chr16	583583	583666	ENSG00000007541.16|PIGQ|pc|chr16:583583:583666:+	0	+
#Deleted in new
chr16	583753	583770	ENSG00000007541.16|PIGQ|pc|chr16:583753:583770:+	0	+
#Deleted in new
chr16	58382988	58383169	ENSG00000261078.1|AC009118.1|lncRNA|chr16:58382988:58383169:-	0	-
#Deleted in new
chr16	58383605	58383798	ENSG00000261078.1|AC009118.1|lncRNA|chr16:58383605:58383798:-	0	-
#Deleted in new
chr16	58386620	58386702	ENSG00000181938.13|GINS3|pc|chr16:58386620:58386702:+	0	+
#Deleted in new
chr16	58386620	58386758	ENSG00000181938.13|GINS3|pc|chr16:58386620:58386758:+	0	+
#Deleted in new
chr16	58386620	58386781	ENSG00000181938.13|GINS3|pc|chr16:58386620:58386781:+	0	+
#Partially deleted in new
chr16	58393553	58393673	ENSG00000181938.13|GINS3|pc|chr16:58393553:58393673:+	0	+
#Deleted in new
chr16	58395101	58395218	ENSG00000181938.13|GINS3|pc|chr16:58395101:58395218:+	0	+
#Deleted in new
chr16	58421325	58421385	ENSG00000260186.5|LINC02137|lncRNA|chr16:58421325:58421385:+	0	+
#Deleted in new
chr16	58421338	58421421	ENSG00000260186.5|LINC02137|lncRNA|chr16:58421338:58421421:+	0	+
#Deleted in new
chr16	58421360	58421385	ENSG00000260186.5|LINC02137|lncRNA|chr16:58421360:58421385:+	0	+
#Deleted in new
chr16	58433809	58433948	ENSG00000260186.5|LINC02137|lncRNA|chr16:58433809:58433948:+	0	+
#Deleted in new
chr16	58435691	58435823	ENSG00000260186.5|LINC02137|lncRNA|chr16:58435691:58435823:+	0	+
#Deleted in new
chr16	58435691	58436169	ENSG00000260186.5|LINC02137|lncRNA|chr16:58435691:58436169:+	0	+
#Deleted in new
chr16	58450061	58450695	ENSG00000260186.5|LINC02137|lncRNA|chr16:58450061:58450695:+	0	+
#Deleted in new
chr16	58461470	58461582	ENSG00000260186.5|LINC02137|lncRNA|chr16:58461470:58461582:+	0	+
#Partially deleted in new
chr16	58462845	58462910	ENSG00000103034.14|NDRG4|pc|chr16:58462845:58462910:+	0	+
#Partially deleted in new
chr16	58472186	58472296	ENSG00000103034.14|NDRG4|pc|chr16:58472186:58472296:+	0	+
#Deleted in new
chr16	58527922	58528105	ENSG00000125107.17|CNOT1|pc|chr16:58527922:58528105:-	0	-
#Deleted in new
chr16	58623225	58623409	ENSG00000125107.17|CNOT1|pc|chr16:58623225:58623409:-	0	-
#Deleted in new
chr16	58623281	58623409	ENSG00000125107.17|CNOT1|pc|chr16:58623281:58623409:-	0	-
#Deleted in new
chr16	58624652	58624786	ENSG00000125107.17|CNOT1|pc|chr16:58624652:58624786:-	0	-
#Deleted in new
chr16	58624652	58624794	ENSG00000125107.17|CNOT1|pc|chr16:58624652:58624794:-	0	-
#Deleted in new
chr16	58624672	58624794	ENSG00000125107.17|CNOT1|pc|chr16:58624672:58624794:-	0	-
#Deleted in new
chr16	58675212	58675342	ENSG00000103042.8|SLC38A7|pc|chr16:58675212:58675342:-	0	-
#Deleted in new
chr16	58681387	58681871	ENSG00000103042.8|SLC38A7|pc|chr16:58681387:58681871:-	0	-
#Deleted in new
chr16	58681515	58681708	ENSG00000103042.8|SLC38A7|pc|chr16:58681515:58681708:-	0	-
#Deleted in new
chr16	58705798	58706297	ENSG00000279889.1|AC012183.1|lncRNA|chr16:58705798:58706297:-	0	-
#Partially deleted in new
chr16	58721644	58722278	ENSG00000125166.12|GOT2|pc|chr16:58721644:58722278:-	0	-
#Deleted in new
chr16	58749637	58750113	ENSG00000245768.6|AC092378.1|lncRNA|chr16:58749637:58750113:+	0	+
#Deleted in new
chr16	58749676	58750113	ENSG00000245768.6|AC092378.1|lncRNA|chr16:58749676:58750113:+	0	+
#Partially deleted in new
chr16	58755975	58756178	ENSG00000245768.6|AC092378.1|lncRNA|chr16:58755975:58756178:+	0	+
#Deleted in new
chr16	58862034	58862081	ENSG00000245768.6|AC092378.1|lncRNA|chr16:58862034:58862081:+	0	+
#Deleted in new
chr16	58862034	58862170	ENSG00000245768.6|AC092378.1|lncRNA|chr16:58862034:58862170:+	0	+
#Deleted in new
chr16	58879878	58880036	ENSG00000261638.1|AC092378.2|lncRNA|chr16:58879878:58880036:-	0	-
#Deleted in new
chr16	58879984	58880037	ENSG00000261638.1|AC092378.2|lncRNA|chr16:58879984:58880037:-	0	-
#Deleted in new
chr16	58880167	58880213	ENSG00000261638.1|AC092378.2|lncRNA|chr16:58880167:58880213:-	0	-
#Partially deleted in new
chr1	6593204	6594918	ENSG00000162413.16|KLHL21|pc|chr1:6593204:6594918:-	0	-
#Deleted in new
chr1	6594080	6594110	ENSG00000162413.16|KLHL21|pc|chr1:6594080:6594110:-	0	-
#Deleted in new
chr16	60358454	60359480	ENSG00000278499.2|AC018554.3|pc|chr16:60358454:60359480:-	0	-
#Deleted in new
chr16	60359841	60359903	ENSG00000261436.5|AC018554.1|lncRNA|chr16:60359841:60359903:+	0	+
#Deleted in new
chr16	60360541	60360705	ENSG00000261436.5|AC018554.1|lncRNA|chr16:60360541:60360705:+	0	+
#Deleted in new
chr16	60364816	60364932	ENSG00000261436.5|AC018554.1|lncRNA|chr16:60364816:60364932:+	0	+
#Deleted in new
chr16	60365021	60365095	ENSG00000261436.5|AC018554.1|lncRNA|chr16:60365021:60365095:+	0	+
#Deleted in new
chr16	60365021	60365643	ENSG00000261436.5|AC018554.1|lncRNA|chr16:60365021:60365643:+	0	+
#Deleted in new
chr16	6037209	6038977	ENSG00000280000.1|AC009135.2|lncRNA|chr16:6037209:6038977:+	0	+
#Deleted in new
chr1	66050530	66050718	ENSG00000227466.1|AL590783.1|lncRNA|chr1:66050530:66050718:-	0	-
#Deleted in new
chr16	60521730	60521798	ENSG00000261310.1|AC009081.1|lncRNA|chr16:60521730:60521798:-	0	-
#Deleted in new
chr16	60523005	60523250	ENSG00000261310.1|AC009081.1|lncRNA|chr16:60523005:60523250:-	0	-
#Deleted in new
chr16	6090073	6090137	ENSG00000257180.1|AC009135.1|lncRNA|chr16:6090073:6090137:+	0	+
#Deleted in new
chr16	6092420	6092954	ENSG00000257180.1|AC009135.1|lncRNA|chr16:6092420:6092954:+	0	+
#Partially deleted in new
chr1	66112769	66112798	ENSG00000184588.17|PDE4B|pc|chr1:66112769:66112798:+	0	+
#Partially deleted in new
chr16	616644	617268	ENSG00000197562.9|RAB40C|pc|chr16:616644:617268:+	0	+
#Deleted in new
chr16	61918257	61918714	ENSG00000150394.13|CDH8|pc|chr16:61918257:61918714:-	0	-
#Deleted in new
chr16	61918320	61918399	ENSG00000260115.1|AC012174.1|lncRNA|chr16:61918320:61918399:+	0	+
#Partially deleted in new
chr16	61934111	61934223	ENSG00000260115.1|AC012174.1|lncRNA|chr16:61934111:61934223:+	0	+
#Partially deleted in new
chr16	61940241	61940697	ENSG00000260115.1|AC012174.1|lncRNA|chr16:61940241:61940697:+	0	+
#Deleted in new
chr1	6624865	6624954	ENSG00000041988.15|THAP3|pc|chr1:6624865:6624954:+	0	+
#Deleted in new
chr1	6629642	6629724	ENSG00000041988.15|THAP3|pc|chr1:6629642:6629724:+	0	+
#Deleted in new
chr1	6630287	6630326	ENSG00000041988.15|THAP3|pc|chr1:6630287:6630326:+	0	+
#Deleted in new
chr1	6630287	6630353	ENSG00000041988.15|THAP3|pc|chr1:6630287:6630353:+	0	+
#Deleted in new
chr1	6630290	6630353	ENSG00000041988.15|THAP3|pc|chr1:6630290:6630353:+	0	+
#Deleted in new
chr16	63090261	63090322	ENSG00000261502.3|AC040174.1|lncRNA|chr16:63090261:63090322:-	0	-
#Deleted in new
chr16	63119322	63119365	ENSG00000261502.3|AC040174.1|lncRNA|chr16:63119322:63119365:-	0	-
#Deleted in new
chr16	63129173	63129654	ENSG00000261502.3|AC040174.1|lncRNA|chr16:63129173:63129654:-	0	-
#Deleted in new
chr16	63314263	63314322	ENSG00000260658.5|AC138305.1|lncRNA|chr16:63314263:63314322:-	0	-
#Deleted in new
chr16	63368843	63369209	ENSG00000261743.1|AC138305.2|lncRNA|chr16:63368843:63369209:+	0	+
#Deleted in new
chr16	63369266	63369456	ENSG00000261743.1|AC138305.2|lncRNA|chr16:63369266:63369456:+	0	+
#Partially deleted in new
chr16	63397706	63397946	ENSG00000279225.1|AC138305.3|lncRNA|chr16:63397706:63397946:+	0	+
#Deleted in new
chr16	63532816	63532931	ENSG00000260658.5|AC138305.1|lncRNA|chr16:63532816:63532931:-	0	-
#Deleted in new
chr16	63617692	63618044	ENSG00000260658.5|AC138305.1|lncRNA|chr16:63617692:63618044:-	0	-
#Deleted in new
chr16	63617692	63618046	ENSG00000260658.5|AC138305.1|lncRNA|chr16:63617692:63618046:-	0	-
#Partially deleted in new
chr16	636816	636945	ENSG00000172366.19|MCRIP2|pc|chr16:636816:636945:+	0	+
#Deleted in new
chr16	636902	636945	ENSG00000172366.19|MCRIP2|pc|chr16:636902:636945:+	0	+
#Deleted in new
chr16	637015	637056	ENSG00000172366.19|MCRIP2|pc|chr16:637015:637056:+	0	+
#Deleted in new
chr16	63730276	63730312	ENSG00000261014.1|LINC02165|lncRNA|chr16:63730276:63730312:+	0	+
#Deleted in new
chr16	63730475	63730650	ENSG00000261014.1|LINC02165|lncRNA|chr16:63730475:63730650:+	0	+
#Deleted in new
chr16	63754605	63754757	ENSG00000261014.1|LINC02165|lncRNA|chr16:63754605:63754757:+	0	+
#Partially deleted in new
chr16	638022	638587	ENSG00000172366.19|MCRIP2|pc|chr16:638022:638587:+	0	+
#Partially deleted in new
chr16	638022	638620	ENSG00000172366.19|MCRIP2|pc|chr16:638022:638620:+	0	+
#Deleted in new
chr16	64245743	64245777	ENSG00000261028.1|AC012322.1|lncRNA|chr16:64245743:64245777:-	0	-
#Deleted in new
chr16	64317565	64317681	ENSG00000261028.1|AC012322.1|lncRNA|chr16:64317565:64317681:-	0	-
#Partially deleted in new
chr16	64343528	64343909	ENSG00000261028.1|AC012322.1|lncRNA|chr16:64343528:64343909:-	0	-
#Deleted in new
chr16	64534991	64535076	ENSG00000259846.1|AC092131.1|lncRNA|chr16:64534991:64535076:+	0	+
#Deleted in new
chr16	64600138	64600247	ENSG00000259846.1|AC092131.1|lncRNA|chr16:64600138:64600247:+	0	+
#Partially deleted in new
chr16	65006861	65007111	ENSG00000140937.13|CDH11|pc|chr16:65006861:65007111:-	0	-
#Deleted in new
chr16	65094606	65094895	ENSG00000140937.13|CDH11|pc|chr16:65094606:65094895:-	0	-
#Deleted in new
chr1	6651016	6651180	ENSG00000007923.15|DNAJC11|pc|chr1:6651016:6651180:-	0	-
#Partially deleted in new
chr16	65141755	65142099	ENSG00000259847.1|LINC02126|lncRNA|chr16:65141755:65142099:-	0	-
#Deleted in new
chr16	65190972	65191215	ENSG00000260834.1|AC009055.2|lncRNA|chr16:65190972:65191215:-	0	-
#Deleted in new
chr16	65203898	65204092	ENSG00000260834.1|AC009055.2|lncRNA|chr16:65203898:65204092:-	0	-
#Deleted in new
chr16	65233014	65233885	ENSG00000260834.1|AC009055.2|lncRNA|chr16:65233014:65233885:-	0	-
#Deleted in new
chr16	65233055	65233180	ENSG00000260364.1|AC009055.1|lncRNA|chr16:65233055:65233180:+	0	+
#Deleted in new
chr16	65234885	65234904	ENSG00000260834.1|AC009055.2|lncRNA|chr16:65234885:65234904:-	0	-
#Deleted in new
chr16	65234885	65234914	ENSG00000260834.1|AC009055.2|lncRNA|chr16:65234885:65234914:-	0	-
#Partially deleted in new
chr16	653745	655147	ENSG00000161996.18|WDR90|pc|chr16:653745:655147:+	0	+
#Deleted in new
chr16	65375203	65375326	ENSG00000261742.5|LINC00922|lncRNA|chr16:65375203:65375326:-	0	-
#Deleted in new
chr16	65395982	65396195	ENSG00000260364.1|AC009055.1|lncRNA|chr16:65395982:65396195:+	0	+
#Deleted in new
chr16	65576238	65576300	ENSG00000261742.5|LINC00922|lncRNA|chr16:65576238:65576300:-	0	-
#Deleted in new
chr16	65601100	65601454	ENSG00000260004.1|AC092138.1|lncRNA|chr16:65601100:65601454:-	0	-
#Deleted in new
chr16	65601580	65601698	ENSG00000260004.1|AC092138.1|lncRNA|chr16:65601580:65601698:-	0	-
#Deleted in new
chr16	65646686	65646947	ENSG00000261818.1|AC092138.2|lncRNA|chr16:65646686:65646947:+	0	+
#Deleted in new
chr16	6576911	6577359	ENSG00000260835.1|AC007223.1|lncRNA|chr16:6576911:6577359:+	0	+
#Deleted in new
chr1	66590469	66590606	ENSG00000118473.21|SGIP1|pc|chr1:66590469:66590606:+	0	+
#Deleted in new
chr1	66615938	66616119	ENSG00000118473.21|SGIP1|pc|chr1:66615938:66616119:+	0	+
#Partially deleted in new
chr16	663139	663553	ENSG00000161996.18|WDR90|pc|chr16:663139:663553:+	0	+
#Deleted in new
chr16	663144	663437	ENSG00000161996.18|WDR90|pc|chr16:663144:663437:+	0	+
#Deleted in new
chr16	66408523	66408814	ENSG00000246898.1|LINC00920|lncRNA|chr16:66408523:66408814:+	0	+
#Deleted in new
chr16	66410279	66412135	ENSG00000246898.1|LINC00920|lncRNA|chr16:66410279:66412135:+	0	+
#Deleted in new
chr16	66475601	66475678	ENSG00000260851.6|AC010542.3|pc|chr16:66475601:66475678:-	0	-
#Deleted in new
chr16	66475601	66475678	ENSG00000261656.5|BEAN1-AS1|lncRNA|chr16:66475601:66475678:-	0	-
#Deleted in new
chr16	66475601	66475867	ENSG00000261656.5|BEAN1-AS1|lncRNA|chr16:66475601:66475867:-	0	-
#Deleted in new
chr16	66476263	66476402	ENSG00000261656.5|BEAN1-AS1|lncRNA|chr16:66476263:66476402:-	0	-
#Deleted in new
chr16	66479007	66479131	ENSG00000261656.5|BEAN1-AS1|lncRNA|chr16:66479007:66479131:-	0	-
#Deleted in new
chr16	66482881	66482915	ENSG00000166546.13|BEAN1|pc|chr16:66482881:66482915:+	0	+
#Deleted in new
chr16	66492961	66493214	ENSG00000166546.13|BEAN1|pc|chr16:66492961:66493214:+	0	+
#Deleted in new
chr16	66492961	66493441	ENSG00000166546.13|BEAN1|pc|chr16:66492961:66493441:+	0	+
#Deleted in new
chr16	66492961	66493529	ENSG00000166546.13|BEAN1|pc|chr16:66492961:66493529:+	0	+
#Deleted in new
chr16	66508002	66508771	ENSG00000166548.15|TK2|pc|chr16:66508002:66508771:-	0	-
#Partially deleted in new
chr16	66509436	66509757	ENSG00000260755.1|AC010542.2|lncRNA|chr16:66509436:66509757:+	0	+
#Deleted in new
chr16	66524857	66524961	ENSG00000166548.15|TK2|pc|chr16:66524857:66524961:-	0	-
#Deleted in new
chr16	66546556	66546650	ENSG00000166548.15|TK2|pc|chr16:66546556:66546650:-	0	-
#Deleted in new
chr16	66547970	66548065	ENSG00000166548.15|TK2|pc|chr16:66547970:66548065:-	0	-
#Partially deleted in new
chr16	66550252	66550270	ENSG00000166548.15|TK2|pc|chr16:66550252:66550270:-	0	-
#Deleted in new
chr16	66566082	66566243	ENSG00000217555.12|CKLF|pc|chr16:66566082:66566243:+	0	+
#Deleted in new
chr16	66566082	66566251	ENSG00000217555.12|CKLF|pc|chr16:66566082:66566251:+	0	+
#Partially deleted in new
chr16	66566513	66566945	ENSG00000089505.17|CMTM1|pc|chr16:66566513:66566945:+	0	+
#Deleted in new
chr16	66571136	66571270	ENSG00000089505.17|CMTM1|pc|chr16:66571136:66571270:+	0	+
#Deleted in new
chr16	66571150	66571270	ENSG00000089505.17|CMTM1|pc|chr16:66571150:66571270:+	0	+
#Deleted in new
chr16	66574939	66575137	ENSG00000089505.17|CMTM1|pc|chr16:66574939:66575137:+	0	+
#Split in new
chr16	66580424	66580716	ENSG00000260650.1|AC010542.1|lncRNA|chr16:66580424:66580716:-	0	-
#Deleted in new
chr16	66603873	66603909	ENSG00000140931.19|CMTM3|pc|chr16:66603873:66603909:+	0	+
#Partially deleted in new
chr16	66604031	66604482	ENSG00000140931.19|CMTM3|pc|chr16:66604031:66604482:+	0	+
#Deleted in new
chr16	66604156	66604182	ENSG00000140931.19|CMTM3|pc|chr16:66604156:66604182:+	0	+
#Partially deleted in new
chr16	66604309	66604449	ENSG00000140931.19|CMTM3|pc|chr16:66604309:66604449:+	0	+
#Deleted in new
chr1	66665863	66666967	ENSG00000248458.2|AL139147.1|lncRNA|chr1:66665863:66666967:-	0	-
#Deleted in new
chr16	66724661	66724748	ENSG00000135720.12|DYNC1LI2|pc|chr16:66724661:66724748:-	0	-
#Deleted in new
chr16	66738262	66738318	ENSG00000260558.1|AC018557.2|lncRNA|chr16:66738262:66738318:+	0	+
#Deleted in new
chr1	6667708	6667810	ENSG00000007923.15|DNAJC11|pc|chr1:6667708:6667810:-	0	-
#Deleted in new
chr16	66800047	66800196	ENSG00000249961.9|TERB1|pc|chr16:66800047:66800196:-	0	-
#Deleted in new
chr1	6668124	6668210	ENSG00000007923.15|DNAJC11|pc|chr1:6668124:6668210:-	0	-
#Partially deleted in new
chr16	66813128	66813697	ENSG00000159593.14|NAE1|pc|chr16:66813128:66813697:-	0	-
#Deleted in new
chr16	66827459	66827564	ENSG00000159593.14|NAE1|pc|chr16:66827459:66827564:-	0	-
#Deleted in new
chr16	66827934	66828077	ENSG00000159593.14|NAE1|pc|chr16:66827934:66828077:-	0	-
#Deleted in new
chr16	66827979	66828077	ENSG00000159593.14|NAE1|pc|chr16:66827979:66828077:-	0	-
#Deleted in new
chr16	66827979	66828142	ENSG00000159593.14|NAE1|pc|chr16:66827979:66828142:-	0	-
#Deleted in new
chr1	66684106	66684187	ENSG00000118473.21|SGIP1|pc|chr1:66684106:66684187:+	0	+
#Partially deleted in new
chr16	66878588	66878639	ENSG00000172840.6|PDP2|pc|chr16:66878588:66878639:+	0	+
#Deleted in new
chr16	66883014	66883102	ENSG00000172840.6|PDP2|pc|chr16:66883014:66883102:+	0	+
#Deleted in new
chr16	66888014	66888112	ENSG00000172840.6|PDP2|pc|chr16:66888014:66888112:+	0	+
#Deleted in new
chr16	66892553	66892651	ENSG00000172840.6|PDP2|pc|chr16:66892553:66892651:+	0	+
#Deleted in new
chr16	66892895	66893000	ENSG00000172840.6|PDP2|pc|chr16:66892895:66893000:+	0	+
#Duplicated in new
chr16	66934455	66934913	ENSG00000172831.11|CES2|pc|chr16:66934455:66934913:+	0	+
#Duplicated in new
chr16	66943298	66943632	ENSG00000172831.11|CES2|pc|chr16:66943298:66943632:+	0	+
#Split in new
chr16	66943838	66945069	ENSG00000172831.11|CES2|pc|chr16:66943838:66945069:+	0	+
#Split in new
chr16	66943838	66945096	ENSG00000172831.11|CES2|pc|chr16:66943838:66945096:+	0	+
#Deleted in new
chr16	66960677	66960769	ENSG00000265408.1|AC009084.1|lncRNA|chr16:66960677:66960769:+	0	+
#Deleted in new
chr16	66996059	66996179	ENSG00000172824.14|CES4A|pc|chr16:66996059:66996179:+	0	+
#Deleted in new
chr16	67005558	67005615	ENSG00000172824.14|CES4A|pc|chr16:67005558:67005615:+	0	+
#Deleted in new
chr1	6670460	6670910	ENSG00000007923.15|DNAJC11|pc|chr1:6670460:6670910:-	0	-
#Partially deleted in new
chr16	67134167	67136308	ENSG00000125149.11|C16orf70|pc|chr16:67134167:67136308:+	0	+
#Deleted in new
chr16	67134627	67134812	ENSG00000125149.11|C16orf70|pc|chr16:67134627:67134812:+	0	+
#Deleted in new
chr16	67134771	67135192	ENSG00000125149.11|C16orf70|pc|chr16:67134771:67135192:+	0	+
#Deleted in new
chr16	67136255	67136310	ENSG00000125149.11|C16orf70|pc|chr16:67136255:67136310:+	0	+
#Partially deleted in new
chr16	67155750	67156199	ENSG00000102871.15|TRADD|pc|chr16:67155750:67156199:-	0	-
#Deleted in new
chr16	67172759	67173003	ENSG00000140939.14|NOL3|pc|chr16:67172759:67173003:+	0	+
#Deleted in new
chr16	6723750	6723887	ENSG00000078328.20|RBFOX1|pc|chr16:6723750:6723887:+	0	+
#Deleted in new
chr16	67279146	67279276	ENSG00000196155.12|PLEKHG4|pc|chr16:67279146:67279276:+	0	+
#Deleted in new
chr16	67279237	67279276	ENSG00000196155.12|PLEKHG4|pc|chr16:67279237:67279276:+	0	+
#Deleted in new
chr16	67321798	67321910	ENSG00000168676.10|KCTD19|pc|chr16:67321798:67321910:-	0	-
#Deleted in new
chr16	67325914	67326097	ENSG00000168676.10|KCTD19|pc|chr16:67325914:67326097:-	0	-
#Deleted in new
chr16	67336640	67336730	ENSG00000159708.17|LRRC36|pc|chr16:67336640:67336730:+	0	+
#Deleted in new
chr16	67348480	67348602	ENSG00000159708.17|LRRC36|pc|chr16:67348480:67348602:+	0	+
#Deleted in new
chr16	67362183	67362305	ENSG00000159708.17|LRRC36|pc|chr16:67362183:67362305:+	0	+
#Partially deleted in new
chr16	67481313	67481956	ENSG00000270049.2|AC009061.2|lncRNA|chr16:67481313:67481956:+	0	+
#Deleted in new
chr16	67486813	67487250	ENSG00000270049.2|AC009061.2|lncRNA|chr16:67486813:67487250:+	0	+
#Deleted in new
chr16	67504024	67505063	ENSG00000270049.2|AC009061.2|lncRNA|chr16:67504024:67505063:+	0	+
#Deleted in new
chr16	67614380	67614451	ENSG00000237718.2|AC009095.1|lncRNA|chr16:67614380:67614451:-	0	-
#Partially deleted in new
chr16	67614891	67616146	ENSG00000237718.2|AC009095.1|lncRNA|chr16:67614891:67616146:-	0	-
#Partially deleted in new
chr16	67680433	67685802	ENSG00000141098.12|GFOD2|pc|chr16:67680433:67685802:-	0	-
#Partially deleted in new
chr16	67680748	67681490	ENSG00000141098.12|GFOD2|pc|chr16:67680748:67681490:-	0	-
#Deleted in new
chr16	67683279	67683584	ENSG00000141098.12|GFOD2|pc|chr16:67683279:67683584:-	0	-
#Deleted in new
chr16	67735644	67735754	ENSG00000141084.10|RANBP10|pc|chr16:67735644:67735754:-	0	-
#Deleted in new
chr16	67738587	67739073	ENSG00000270165.1|AC010530.1|lncRNA|chr16:67738587:67739073:-	0	-
#Deleted in new
chr16	67807667	67807782	ENSG00000102904.14|TSNAXIP1|pc|chr16:67807667:67807782:+	0	+
#Partially deleted in new
chr16	67829764	67830088	ENSG00000102901.12|CENPT|pc|chr16:67829764:67830088:-	0	-
#Deleted in new
chr16	67829929	67830088	ENSG00000102901.12|CENPT|pc|chr16:67829929:67830088:-	0	-
#Deleted in new
chr16	67829944	67830088	ENSG00000102901.12|CENPT|pc|chr16:67829944:67830088:-	0	-
#Deleted in new
chr16	67834124	67834212	ENSG00000102901.12|CENPT|pc|chr16:67834124:67834212:-	0	-
#Deleted in new
chr16	67835171	67835295	ENSG00000102901.12|CENPT|pc|chr16:67835171:67835295:-	0	-
#Deleted in new
chr16	67835171	67835300	ENSG00000102901.12|CENPT|pc|chr16:67835171:67835300:-	0	-
#Deleted in new
chr16	67835171	67835338	ENSG00000102901.12|CENPT|pc|chr16:67835171:67835338:-	0	-
#Deleted in new
chr16	67835247	67835300	ENSG00000102901.12|CENPT|pc|chr16:67835247:67835300:-	0	-
#Deleted in new
chr16	67835537	67835586	ENSG00000102901.12|CENPT|pc|chr16:67835537:67835586:-	0	-
#Deleted in new
chr16	67835537	67835658	ENSG00000102901.12|CENPT|pc|chr16:67835537:67835658:-	0	-
#Deleted in new
chr16	67903031	67903145	ENSG00000159792.9|PSKH1|pc|chr16:67903031:67903145:+	0	+
#Deleted in new
chr16	67940736	67940831	ENSG00000213398.7|LCAT|pc|chr16:67940736:67940831:-	0	-
#Deleted in new
chr16	67941367	67941454	ENSG00000213398.7|LCAT|pc|chr16:67941367:67941454:-	0	-
#Deleted in new
chr16	67994785	67994863	ENSG00000167264.17|DUS2|pc|chr16:67994785:67994863:+	0	+
#Deleted in new
chr16	67999266	67999748	ENSG00000167261.13|DPEP2|pc|chr16:67999266:67999748:-	0	-
#Deleted in new
chr16	67999374	67999453	ENSG00000167261.13|DPEP2|pc|chr16:67999374:67999453:-	0	-
#Deleted in new
chr16	67999374	67999512	ENSG00000167261.13|DPEP2|pc|chr16:67999374:67999512:-	0	-
#Deleted in new
chr16	67999395	67999518	ENSG00000167261.13|DPEP2|pc|chr16:67999395:67999518:-	0	-
#Deleted in new
chr16	68000447	68000564	ENSG00000167261.13|DPEP2|pc|chr16:68000447:68000564:-	0	-
#Deleted in new
chr16	68000447	68000568	ENSG00000167261.13|DPEP2|pc|chr16:68000447:68000568:-	0	-
#Deleted in new
chr16	68000447	68000581	ENSG00000167261.13|DPEP2|pc|chr16:68000447:68000581:-	0	-
#Deleted in new
chr16	68000447	68000586	ENSG00000167261.13|DPEP2|pc|chr16:68000447:68000586:-	0	-
#Deleted in new
chr16	68025380	68025494	ENSG00000167264.17|DUS2|pc|chr16:68025380:68025494:+	0	+
#Deleted in new
chr16	68025414	68025494	ENSG00000167264.17|DUS2|pc|chr16:68025414:68025494:+	0	+
#Deleted in new
chr16	68026959	68027082	ENSG00000167264.17|DUS2|pc|chr16:68026959:68027082:+	0	+
#Deleted in new
chr16	68077339	68077529	ENSG00000261864.1|AC130462.1|lncRNA|chr16:68077339:68077529:+	0	+
#Deleted in new
chr16	68138510	68138784	ENSG00000072736.18|NFATC3|pc|chr16:68138510:68138784:+	0	+
#Partially deleted in new
chr16	68199794	68200981	ENSG00000262514.1|AC020978.7|lncRNA|chr16:68199794:68200981:+	0	+
#Partially deleted in new
chr16	68199840	68200981	ENSG00000279621.1|AC020978.9|lncRNA|chr16:68199840:68200981:-	0	-
#Partially deleted in new
chr16	68217710	68218090	ENSG00000072736.18|NFATC3|pc|chr16:68217710:68218090:+	0	+
#Deleted in new
chr16	68221195	68221284	ENSG00000072736.18|NFATC3|pc|chr16:68221195:68221284:+	0	+
#Deleted in new
chr16	68221448	68221671	ENSG00000260891.1|AC020978.4|lncRNA|chr16:68221448:68221671:-	0	-
#Deleted in new
chr16	68253421	68253517	ENSG00000103066.12|PLA2G15|pc|chr16:68253421:68253517:+	0	+
#Deleted in new
chr16	68256161	68256416	ENSG00000260441.5|AC020978.3|lncRNA|chr16:68256161:68256416:-	0	-
#Deleted in new
chr16	68258834	68258867	ENSG00000260441.5|AC020978.3|lncRNA|chr16:68258834:68258867:-	0	-
#Partially deleted in new
chr16	68273794	68273904	ENSG00000103064.13|SLC7A6|pc|chr16:68273794:68273904:+	0	+
#Deleted in new
chr16	68273817	68273904	ENSG00000103064.13|SLC7A6|pc|chr16:68273817:68273904:+	0	+
#Deleted in new
chr16	68273821	68273904	ENSG00000103064.13|SLC7A6|pc|chr16:68273821:68273904:+	0	+
#Partially deleted in new
chr1	66827827	66828558	ENSG00000231080.1|AL592161.1|lncRNA|chr1:66827827:66828558:+	0	+
#Deleted in new
chr16	68312041	68312176	ENSG00000132600.16|PRMT7|pc|chr16:68312041:68312176:+	0	+
#Deleted in new
chr16	68316800	68316935	ENSG00000259797.1|AC020978.2|lncRNA|chr16:68316800:68316935:+	0	+
#Partially deleted in new
chr16	68321425	68321711	ENSG00000132600.16|PRMT7|pc|chr16:68321425:68321711:+	0	+
#Partially deleted in new
chr16	68323688	68324255	ENSG00000132600.16|PRMT7|pc|chr16:68323688:68324255:+	0	+
#Deleted in new
chr16	68328104	68328510	ENSG00000132600.16|PRMT7|pc|chr16:68328104:68328510:+	0	+
#Deleted in new
chr16	68368854	68369214	ENSG00000103056.11|SMPD3|pc|chr16:68368854:68369214:-	0	-
#Partially deleted in new
chr1	66847923	66848311	ENSG00000152763.16|WDR78|pc|chr1:66847923:66848311:-	0	-
#Deleted in new
chr16	68530089	68530334	ENSG00000184939.15|ZFP90|pc|chr16:68530089:68530334:+	0	+
#Deleted in new
chr16	68530147	68530534	ENSG00000184939.15|ZFP90|pc|chr16:68530147:68530534:+	0	+
#Deleted in new
chr16	68530283	68530534	ENSG00000184939.15|ZFP90|pc|chr16:68530283:68530534:+	0	+
#Deleted in new
chr16	68533697	68533855	ENSG00000184939.15|ZFP90|pc|chr16:68533697:68533855:+	0	+
#Deleted in new
chr16	68555072	68555240	ENSG00000184939.15|ZFP90|pc|chr16:68555072:68555240:+	0	+
#Deleted in new
chr16	68557172	68557291	ENSG00000184939.15|ZFP90|pc|chr16:68557172:68557291:+	0	+
#Deleted in new
chr16	68573781	68574223	ENSG00000260084.1|AC126773.1|lncRNA|chr16:68573781:68574223:-	0	-
#Deleted in new
chr16	68575790	68576040	ENSG00000184939.15|ZFP90|pc|chr16:68575790:68576040:+	0	+
#Deleted in new
chr16	68575790	68576072	ENSG00000184939.15|ZFP90|pc|chr16:68575790:68576072:+	0	+
#Deleted in new
chr16	68589407	68589512	ENSG00000260084.1|AC126773.1|lncRNA|chr16:68589407:68589512:-	0	-
#Partially deleted in new
chr16	68591381	68594424	ENSG00000275383.1|AC126773.4|lncRNA|chr16:68591381:68594424:+	0	+
#Deleted in new
chr1	66860712	66860839	ENSG00000152763.16|WDR78|pc|chr1:66860712:66860839:-	0	-
#Deleted in new
chr16	68696143	68696353	ENSG00000062038.13|CDH3|pc|chr16:68696143:68696353:+	0	+
#Deleted in new
chr16	68696557	68696923	ENSG00000062038.13|CDH3|pc|chr16:68696557:68696923:+	0	+
#Deleted in new
chr16	68763293	68763527	ENSG00000039068.18|CDH1|pc|chr16:68763293:68763527:+	0	+
#Partially deleted in new
chr16	68765119	68765564	ENSG00000039068.18|CDH1|pc|chr16:68765119:68765564:+	0	+
#Deleted in new
chr16	68814329	68814544	ENSG00000260798.1|AC099314.1|lncRNA|chr16:68814329:68814544:-	0	-
#Deleted in new
chr16	68826531	68826554	ENSG00000039068.18|CDH1|pc|chr16:68826531:68826554:+	0	+
#Deleted in new
chr16	68834190	68834281	ENSG00000039068.18|CDH1|pc|chr16:68834190:68834281:+	0	+
#Deleted in new
chr16	68846516	68846893	ENSG00000103047.7|TANGO6|pc|chr16:68846516:68846893:+	0	+
#Partially deleted in new
chr16	68867078	68867976	ENSG00000103047.7|TANGO6|pc|chr16:68867078:68867976:+	0	+
#Partially deleted in new
chr1	66890182	66891266	ENSG00000152763.16|WDR78|pc|chr1:66890182:66891266:-	0	-
#Deleted in new
chr1	66906920	66907016	ENSG00000152763.16|WDR78|pc|chr1:66906920:66907016:-	0	-
#Deleted in new
chr16	69139011	69139111	ENSG00000141076.17|UTP4|pc|chr16:69139011:69139111:+	0	+
#Deleted in new
chr1	66919017	66919116	ENSG00000152763.16|WDR78|pc|chr1:66919017:66919116:-	0	-
#Deleted in new
chr1	66921242	66921401	ENSG00000152763.16|WDR78|pc|chr1:66921242:66921401:-	0	-
#Deleted in new
chr16	69230382	69230462	ENSG00000141076.17|UTP4|pc|chr16:69230382:69230462:+	0	+
#Deleted in new
chr16	69230926	69231130	ENSG00000141076.17|UTP4|pc|chr16:69230926:69231130:+	0	+
#Deleted in new
chr16	69235747	69235833	ENSG00000168807.16|SNTB2|pc|chr16:69235747:69235833:+	0	+
#Deleted in new
chr16	69240548	69240905	ENSG00000265113.1|AC026474.1|lncRNA|chr16:69240548:69240905:+	0	+
#Deleted in new
chr16	69241858	69241929	ENSG00000265113.1|AC026474.1|lncRNA|chr16:69241858:69241929:+	0	+
#Deleted in new
chr16	69321977	69322270	ENSG00000132612.15|VPS4A|pc|chr16:69321977:69322270:+	0	+
#Partially deleted in new
chr16	69321990	69323703	ENSG00000213380.14|COG8|pc|chr16:69321990:69323703:-	0	-
#Partially deleted in new
chr16	69324207	69326939	ENSG00000132612.15|VPS4A|pc|chr16:69324207:69326939:+	0	+
#Partially deleted in new
chr16	69326912	69329179	ENSG00000272617.2|COG8|pc|chr16:69326912:69329179:-	0	-
#Deleted in new
chr16	69338207	69338577	ENSG00000213380.14|COG8|pc|chr16:69338207:69338577:-	0	-
#Deleted in new
chr16	69400771	69400876	ENSG00000132604.10|TERF2|pc|chr16:69400771:69400876:-	0	-
#Deleted in new
chr1	66940185	66940222	ENSG00000198160.14|MIER1|pc|chr1:66940185:66940222:+	0	+
#Partially deleted in new
chr16	69459092	69459572	ENSG00000103018.16|CYB5B|pc|chr16:69459092:69459572:+	0	+
#Partially deleted in new
chr16	695215	695263	ENSG00000127585.11|FBXL16|pc|chr16:695215:695263:-	0	-
#Partially deleted in new
chr16	69632140	69632571	ENSG00000274093.1|AC009032.1|lncRNA|chr16:69632140:69632571:+	0	+
#Deleted in new
chr16	69706995	69707207	ENSG00000181019.12|NQO1|pc|chr16:69706995:69707207:-	0	-
#Deleted in new
chr16	69709873	69710101	ENSG00000261602.1|AC092115.2|lncRNA|chr16:69709873:69710101:+	0	+
#Deleted in new
chr16	69726432	69726506	ENSG00000181019.12|NQO1|pc|chr16:69726432:69726506:-	0	-
#Deleted in new
chr16	69726432	69726525	ENSG00000181019.12|NQO1|pc|chr16:69726432:69726525:-	0	-
#Deleted in new
chr16	69726432	69726560	ENSG00000181019.12|NQO1|pc|chr16:69726432:69726560:-	0	-
#Deleted in new
chr16	69726432	69726584	ENSG00000181019.12|NQO1|pc|chr16:69726432:69726584:-	0	-
#Deleted in new
chr16	69726432	69726668	ENSG00000181019.12|NQO1|pc|chr16:69726432:69726668:-	0	-
#Deleted in new
chr16	69726432	69726951	ENSG00000181019.12|NQO1|pc|chr16:69726432:69726951:-	0	-
#Deleted in new
chr16	69726500	69726560	ENSG00000181019.12|NQO1|pc|chr16:69726500:69726560:-	0	-
#Deleted in new
chr16	69727012	69727175	ENSG00000262136.1|AC092115.3|lncRNA|chr16:69727012:69727175:+	0	+
#Deleted in new
chr16	69774693	69774788	ENSG00000198373.12|WWP2|pc|chr16:69774693:69774788:+	0	+
#Deleted in new
chr16	69775078	69775140	ENSG00000198373.12|WWP2|pc|chr16:69775078:69775140:+	0	+
#Deleted in new
chr16	69776186	69776241	ENSG00000198373.12|WWP2|pc|chr16:69776186:69776241:+	0	+
#Deleted in new
chr16	69776188	69776241	ENSG00000198373.12|WWP2|pc|chr16:69776188:69776241:+	0	+
#Deleted in new
chr16	69783031	69783152	ENSG00000198373.12|WWP2|pc|chr16:69783031:69783152:+	0	+
#Deleted in new
chr16	69787937	69788202	ENSG00000198373.12|WWP2|pc|chr16:69787937:69788202:+	0	+
#Deleted in new
chr16	69838736	69838889	ENSG00000198373.12|WWP2|pc|chr16:69838736:69838889:+	0	+
#Deleted in new
chr16	69976296	69976732	ENSG00000196696.12|PDXDC2P-NPIPB14P|lncRNA|chr16:69976296:69976732:-	0	-
#Deleted in new
chr16	69976351	69976732	ENSG00000196696.12|PDXDC2P-NPIPB14P|lncRNA|chr16:69976351:69976732:-	0	-
#Deleted in new
chr16	69976810	69978003	ENSG00000196696.12|PDXDC2P-NPIPB14P|lncRNA|chr16:69976810:69978003:-	0	-
#Deleted in new
chr16	69978076	69978112	ENSG00000196696.12|PDXDC2P-NPIPB14P|lncRNA|chr16:69978076:69978112:-	0	-
#Deleted in new
chr16	69978221	69978282	ENSG00000196696.12|PDXDC2P-NPIPB14P|lncRNA|chr16:69978221:69978282:-	0	-
#Deleted in new
chr16	69982349	69982494	ENSG00000196696.12|PDXDC2P-NPIPB14P|lncRNA|chr16:69982349:69982494:-	0	-
#Deleted in new
chr16	69982657	69982757	ENSG00000196696.12|PDXDC2P-NPIPB14P|lncRNA|chr16:69982657:69982757:-	0	-
#Deleted in new
chr16	69986380	69986509	ENSG00000196696.12|PDXDC2P-NPIPB14P|lncRNA|chr16:69986380:69986509:-	0	-
#Deleted in new
chr16	69989955	69990208	ENSG00000196696.12|PDXDC2P-NPIPB14P|lncRNA|chr16:69989955:69990208:-	0	-
#Deleted in new
chr16	69990596	69990683	ENSG00000196696.12|PDXDC2P-NPIPB14P|lncRNA|chr16:69990596:69990683:-	0	-
#Deleted in new
chr16	70145726	70145748	ENSG00000090857.13|PDPR|pc|chr16:70145726:70145748:+	0	+
#Deleted in new
chr16	70145754	70145797	ENSG00000090857.13|PDPR|pc|chr16:70145754:70145797:+	0	+
#Deleted in new
chr16	70145754	70145833	ENSG00000090857.13|PDPR|pc|chr16:70145754:70145833:+	0	+
#Deleted in new
chr16	70145794	70145833	ENSG00000090857.13|PDPR|pc|chr16:70145794:70145833:+	0	+
#Split in new
chr16	70246777	70251930	ENSG00000223496.2|EXOSC6|pc|chr16:70246777:70251930:-	0	-
#Partially deleted in new
chr16	70317255	70317373	ENSG00000261777.5|AC012184.3|lncRNA|chr16:70317255:70317373:-	0	-
#Deleted in new
chr16	70319600	70319683	ENSG00000157349.16|DDX19B|pc|chr16:70319600:70319683:+	0	+
#Deleted in new
chr16	70319600	70319709	ENSG00000157349.16|DDX19B|pc|chr16:70319600:70319709:+	0	+
#Deleted in new
chr16	70341939	70342099	ENSG00000261777.5|AC012184.3|lncRNA|chr16:70341939:70342099:-	0	-
#Deleted in new
chr16	70346198	70346747	ENSG00000261777.5|AC012184.3|lncRNA|chr16:70346198:70346747:-	0	-
#Deleted in new
chr16	70347874	70347990	ENSG00000168872.16|DDX19A|pc|chr16:70347874:70347990:+	0	+
#Deleted in new
chr16	70360776	70360865	ENSG00000168872.16|DDX19A|pc|chr16:70360776:70360865:+	0	+
#Deleted in new
chr16	70360776	70360894	ENSG00000168872.16|DDX19A|pc|chr16:70360776:70360894:+	0	+
#Deleted in new
chr16	70457912	70457975	ENSG00000157353.16|FUK|pc|chr16:70457912:70457975:+	0	+
#Deleted in new
chr16	70462172	70462292	ENSG00000157353.16|FUK|pc|chr16:70462172:70462292:+	0	+
#Deleted in new
chr16	70515867	70516040	ENSG00000103051.18|COG4|pc|chr16:70515867:70516040:-	0	-
#Deleted in new
chr16	70524549	70525017	ENSG00000189091.12|SF3B3|pc|chr16:70524549:70525017:+	0	+
#Deleted in new
chr16	70524863	70525017	ENSG00000189091.12|SF3B3|pc|chr16:70524863:70525017:+	0	+
#Deleted in new
chr16	70576300	70576348	ENSG00000189091.12|SF3B3|pc|chr16:70576300:70576348:+	0	+
#Deleted in new
chr16	70731274	70731359	ENSG00000103043.14|VAC14|pc|chr16:70731274:70731359:-	0	-
#Partially deleted in new
chr16	70766442	70766556	ENSG00000214353.7|VAC14-AS1|lncRNA|chr16:70766442:70766556:+	0	+
#Partially deleted in new
chr16	70768355	70768785	ENSG00000279815.1|AC020763.5|lncRNA|chr16:70768355:70768785:+	0	+
#Deleted in new
chr16	70768845	70768943	ENSG00000214353.7|VAC14-AS1|lncRNA|chr16:70768845:70768943:+	0	+
#Deleted in new
chr16	70811311	70811435	ENSG00000157423.17|HYDIN|pc|chr16:70811311:70811435:-	0	-
#Partially deleted in new
chr16	70817110	70817489	ENSG00000157423.17|HYDIN|pc|chr16:70817110:70817489:-	0	-
#Deleted in new
chr16	70865117	70865363	ENSG00000157423.17|HYDIN|pc|chr16:70865117:70865363:-	0	-
#Partially deleted in new
chr16	70893535	70894548	ENSG00000157423.17|HYDIN|pc|chr16:70893535:70894548:-	0	-
#Deleted in new
chr16	70933574	70933726	ENSG00000157423.17|HYDIN|pc|chr16:70933574:70933726:-	0	-
#Partially deleted in new
chr16	71066579	71066933	ENSG00000157423.17|HYDIN|pc|chr16:71066579:71066933:-	0	-
#Partially deleted in new
chr16	71066782	71066933	ENSG00000157423.17|HYDIN|pc|chr16:71066782:71066933:-	0	-
#Deleted in new
chr16	71075943	71075988	ENSG00000157423.17|HYDIN|pc|chr16:71075943:71075988:-	0	-
#Partially deleted in new
chr16	71080048	71080386	ENSG00000157423.17|HYDIN|pc|chr16:71080048:71080386:-	0	-
#Partially deleted in new
chr16	71113351	71113638	ENSG00000259798.1|AC138625.1|lncRNA|chr16:71113351:71113638:+	0	+
#Deleted in new
chr1	67111576	67111644	ENSG00000203963.11|C1orf141|pc|chr1:67111576:67111644:-	0	-
#Deleted in new
chr1	67113613	67113756	ENSG00000203963.11|C1orf141|pc|chr1:67113613:67113756:-	0	-
#Partially deleted in new
chr16	71203724	71204057	ENSG00000157423.17|HYDIN|pc|chr16:71203724:71204057:-	0	-
#Deleted in new
chr1	67121604	67123956	ENSG00000275678.1|AL133320.1|lncRNA|chr1:67121604:67123956:-	0	-
#Deleted in new
chr16	71288675	71288745	ENSG00000180917.17|CMTR2|pc|chr16:71288675:71288745:-	0	-
#Deleted in new
chr16	71289686	71289715	ENSG00000180917.17|CMTR2|pc|chr16:71289686:71289715:-	0	-
#Deleted in new
chr1	67131141	67131227	ENSG00000203963.11|C1orf141|pc|chr1:67131141:67131227:-	0	-
#Deleted in new
chr1	67138906	67139161	ENSG00000162594.15|IL23R|pc|chr1:67138906:67139161:+	0	+
#Deleted in new
chr16	71426160	71426464	ENSG00000261348.1|LINC02136|lncRNA|chr16:71426160:71426464:-	0	-
#Partially deleted in new
chr16	71450589	71450715	ENSG00000167377.17|ZNF23|pc|chr16:71450589:71450715:-	0	-
#Deleted in new
chr16	71456071	71456121	ENSG00000167377.17|ZNF23|pc|chr16:71456071:71456121:-	0	-
#Deleted in new
chr16	71456071	71456121	ENSG00000261611.5|AC010547.5|pc|chr16:71456071:71456121:-	0	-
#Partially deleted in new
chr16	71463257	71465941	ENSG00000247324.2|AC010547.1|lncRNA|chr16:71463257:71465941:+	0	+
#Deleted in new
chr16	71463932	71464067	ENSG00000247324.2|AC010547.1|lncRNA|chr16:71463932:71464067:+	0	+
#Split in new
chr16	71473582	71476272	ENSG00000157429.15|ZNF19|pc|chr16:71473582:71476272:-	0	-
#Partially deleted in new
chr16	71477885	71478341	ENSG00000157429.15|ZNF19|pc|chr16:71477885:71478341:-	0	-
#Split in new
chr16	71478219	71479005	ENSG00000157429.15|ZNF19|pc|chr16:71478219:71479005:-	0	-
#Deleted in new
chr16	71478434	71478507	ENSG00000157429.15|ZNF19|pc|chr16:71478434:71478507:-	0	-
#Deleted in new
chr16	71482081	71482136	ENSG00000157429.15|ZNF19|pc|chr16:71482081:71482136:-	0	-
#Deleted in new
chr16	71482081	71482143	ENSG00000157429.15|ZNF19|pc|chr16:71482081:71482143:-	0	-
#Deleted in new
chr16	71482081	71482143	ENSG00000261611.5|AC010547.5|pc|chr16:71482081:71482143:-	0	-
#Deleted in new
chr16	71482099	71482143	ENSG00000157429.15|ZNF19|pc|chr16:71482099:71482143:-	0	-
#Deleted in new
chr16	71482241	71482322	ENSG00000157429.15|ZNF19|pc|chr16:71482241:71482322:-	0	-
#Deleted in new
chr16	71484588	71484610	ENSG00000157429.15|ZNF19|pc|chr16:71484588:71484610:-	0	-
#Deleted in new
chr16	71484588	71484613	ENSG00000157429.15|ZNF19|pc|chr16:71484588:71484613:-	0	-
#Deleted in new
chr16	71484588	71484614	ENSG00000157429.15|ZNF19|pc|chr16:71484588:71484614:-	0	-
#Deleted in new
chr16	71484588	71484748	ENSG00000157429.15|ZNF19|pc|chr16:71484588:71484748:-	0	-
#Deleted in new
chr16	71484588	71484748	ENSG00000261611.5|AC010547.5|pc|chr16:71484588:71484748:-	0	-
#Deleted in new
chr16	71484620	71484748	ENSG00000157429.15|ZNF19|pc|chr16:71484620:71484748:-	0	-
#Deleted in new
chr16	71487079	71487110	ENSG00000157429.15|ZNF19|pc|chr16:71487079:71487110:-	0	-
#Deleted in new
chr16	71487079	71487410	ENSG00000157429.15|ZNF19|pc|chr16:71487079:71487410:-	0	-
#Deleted in new
chr16	71488997	71489276	ENSG00000157429.15|ZNF19|pc|chr16:71488997:71489276:-	0	-
#Deleted in new
chr16	71488997	71489311	ENSG00000261611.5|AC010547.5|pc|chr16:71488997:71489311:-	0	-
#Deleted in new
chr16	71488997	71489314	ENSG00000157429.15|ZNF19|pc|chr16:71488997:71489314:-	0	-
#Deleted in new
chr16	71489271	71489338	ENSG00000157429.15|ZNF19|pc|chr16:71489271:71489338:-	0	-
#Deleted in new
chr16	71489271	71489351	ENSG00000157429.15|ZNF19|pc|chr16:71489271:71489351:-	0	-
#Deleted in new
chr16	71494953	71495018	ENSG00000157429.15|ZNF19|pc|chr16:71494953:71495018:-	0	-
#Deleted in new
chr16	71513862	71513935	ENSG00000260520.1|AC010547.3|lncRNA|chr16:71513862:71513935:+	0	+
#Deleted in new
chr16	71514003	71514157	ENSG00000157429.15|ZNF19|pc|chr16:71514003:71514157:-	0	-
#Deleted in new
chr16	71514699	71514821	ENSG00000260520.1|AC010547.3|lncRNA|chr16:71514699:71514821:+	0	+
#Deleted in new
chr16	71539833	71539928	ENSG00000260015.1|AC010547.2|lncRNA|chr16:71539833:71539928:-	0	-
#Deleted in new
chr16	71546201	71546333	ENSG00000157429.15|ZNF19|pc|chr16:71546201:71546333:-	0	-
#Deleted in new
chr16	71546276	71546333	ENSG00000157429.15|ZNF19|pc|chr16:71546276:71546333:-	0	-
#Deleted in new
chr16	71546276	71546335	ENSG00000157429.15|ZNF19|pc|chr16:71546276:71546335:-	0	-
#Partially deleted in new
chr16	71575077	71576026	ENSG00000198650.10|TAT|pc|chr16:71575077:71576026:-	0	-
#Deleted in new
chr16	71578064	71578187	ENSG00000260886.1|TAT-AS1|lncRNA|chr16:71578064:71578187:+	0	+
#Deleted in new
chr16	71623707	71623953	ENSG00000260593.1|AC009097.2|lncRNA|chr16:71623707:71623953:-	0	-
#Deleted in new
chr16	71641215	71642114	ENSG00000140832.9|MARVELD3|pc|chr16:71641215:71642114:+	0	+
#Deleted in new
chr16	71742281	71743593	ENSG00000166747.12|AP1G1|pc|chr16:71742281:71743593:-	0	-
#Deleted in new
chr16	71751262	71751337	ENSG00000166747.12|AP1G1|pc|chr16:71751262:71751337:-	0	-
#Deleted in new
chr16	71881552	71881800	ENSG00000261765.1|AC009127.2|lncRNA|chr16:71881552:71881800:-	0	-
#Deleted in new
chr16	71882095	71882273	ENSG00000261765.1|AC009127.2|lncRNA|chr16:71882095:71882273:-	0	-
#Deleted in new
chr16	71890568	71890664	ENSG00000182149.20|IST1|pc|chr16:71890568:71890664:+	0	+
#Deleted in new
chr16	71893933	71894481	ENSG00000182149.20|IST1|pc|chr16:71893933:71894481:+	0	+
#Deleted in new
chr16	71894404	71894481	ENSG00000182149.20|IST1|pc|chr16:71894404:71894481:+	0	+
#Deleted in new
chr16	71894718	71894858	ENSG00000182149.20|IST1|pc|chr16:71894718:71894858:+	0	+
#Deleted in new
chr16	71894720	71894858	ENSG00000182149.20|IST1|pc|chr16:71894720:71894858:+	0	+
#Deleted in new
chr16	71903164	71903258	ENSG00000182149.20|IST1|pc|chr16:71903164:71903258:+	0	+
#Deleted in new
chr16	71903589	71903676	ENSG00000182149.20|IST1|pc|chr16:71903589:71903676:+	0	+
#Partially deleted in new
chr16	72015622	72017106	ENSG00000102967.11|DHODH|pc|chr16:72015622:72017106:+	0	+
#Deleted in new
chr16	72020401	72020498	ENSG00000102967.11|DHODH|pc|chr16:72020401:72020498:+	0	+
#Partially deleted in new
chr16	72024144	72027664	ENSG00000102967.11|DHODH|pc|chr16:72024144:72027664:+	0	+
#Partially deleted in new
chr16	72058564	72058672	ENSG00000257017.8|HP|pc|chr16:72058564:72058672:+	0	+
#Deleted in new
chr1	67207615	67207698	ENSG00000162594.15|IL23R|pc|chr1:67207615:67207698:+	0	+
#Deleted in new
chr1	67207637	67207698	ENSG00000162594.15|IL23R|pc|chr1:67207637:67207698:+	0	+
#Deleted in new
chr16	72176822	72176878	ENSG00000118557.15|PMFBP1|pc|chr16:72176822:72176878:-	0	-
#Deleted in new
chr1	67231845	67231852	ENSG00000203963.11|C1orf141|pc|chr1:67231845:67231852:-	0	-
#Deleted in new
chr1	67231845	67231853	ENSG00000203963.11|C1orf141|pc|chr1:67231845:67231853:-	0	-
#Deleted in new
chr16	72479682	72479790	ENSG00000261008.6|LINC01572|lncRNA|chr16:72479682:72479790:-	0	-
#Deleted in new
chr16	72479750	72479790	ENSG00000261008.6|LINC01572|lncRNA|chr16:72479750:72479790:-	0	-
#Deleted in new
chr16	72522137	72522623	ENSG00000261008.6|LINC01572|lncRNA|chr16:72522137:72522623:-	0	-
#Deleted in new
chr16	72522552	72522623	ENSG00000261008.6|LINC01572|lncRNA|chr16:72522552:72522623:-	0	-
#Deleted in new
chr16	72523331	72523415	ENSG00000261008.6|LINC01572|lncRNA|chr16:72523331:72523415:-	0	-
#Deleted in new
chr16	72532958	72533892	ENSG00000260664.2|AC004158.1|lncRNA|chr16:72532958:72533892:+	0	+
#Deleted in new
chr16	72540577	72540611	ENSG00000261008.6|LINC01572|lncRNA|chr16:72540577:72540611:-	0	-
#Deleted in new
chr16	72555264	72555326	ENSG00000261008.6|LINC01572|lncRNA|chr16:72555264:72555326:-	0	-
#Deleted in new
chr16	72561972	72562086	ENSG00000261008.6|LINC01572|lncRNA|chr16:72561972:72562086:-	0	-
#Deleted in new
chr16	72570434	72570515	ENSG00000261008.6|LINC01572|lncRNA|chr16:72570434:72570515:-	0	-
#Deleted in new
chr16	72570450	72570515	ENSG00000261008.6|LINC01572|lncRNA|chr16:72570450:72570515:-	0	-
#Deleted in new
chr16	72570480	72570515	ENSG00000261008.6|LINC01572|lncRNA|chr16:72570480:72570515:-	0	-
#Deleted in new
chr1	6725936	6727408	ENSG00000228750.6|LINC01672|lncRNA|chr1:6725936:6727408:+	0	+
#Deleted in new
chr16	72627534	72627686	ENSG00000261008.6|LINC01572|lncRNA|chr16:72627534:72627686:-	0	-
#Deleted in new
chr1	6727080	6727444	ENSG00000228750.6|LINC01672|lncRNA|chr1:6727080:6727444:+	0	+
#Partially deleted in new
chr16	727105	727140	ENSG00000103253.17|HAGHL|pc|chr16:727105:727140:+	0	+
#Partially deleted in new
chr16	727118	727140	ENSG00000103253.17|HAGHL|pc|chr16:727118:727140:+	0	+
#Deleted in new
chr1	6727432	6727612	ENSG00000228750.6|LINC01672|lncRNA|chr1:6727432:6727612:+	0	+
#Deleted in new
chr16	72772672	72773272	ENSG00000279206.1|AC004943.3|lncRNA|chr16:72772672:72773272:+	0	+
#Deleted in new
chr16	72805997	72806032	ENSG00000259209.3|AC004943.1|lncRNA|chr16:72805997:72806032:+	0	+
#Partially deleted in new
chr16	72973373	72973832	ENSG00000279757.1|AC132068.1|lncRNA|chr16:72973373:72973832:-	0	-
#Deleted in new
chr1	67307363	67307967	ENSG00000081985.10|IL12RB2|pc|chr1:67307363:67307967:+	0	+
#Deleted in new
chr1	67307872	67307967	ENSG00000081985.10|IL12RB2|pc|chr1:67307872:67307967:+	0	+
#Deleted in new
chr16	73081243	73081651	ENSG00000140836.15|ZFHX3|pc|chr16:73081243:73081651:-	0	-
#Deleted in new
chr16	73083296	73083428	ENSG00000140836.15|ZFHX3|pc|chr16:73083296:73083428:-	0	-
#Deleted in new
chr16	73125222	73125326	ENSG00000284675.1|AC116667.2|lncRNA|chr16:73125222:73125326:+	0	+
#Deleted in new
chr16	73130967	73131094	ENSG00000140836.15|ZFHX3|pc|chr16:73130967:73131094:-	0	-
#Deleted in new
chr16	73134519	73134612	ENSG00000284675.1|AC116667.2|lncRNA|chr16:73134519:73134612:+	0	+
#Deleted in new
chr1	67313912	67314000	ENSG00000081985.10|IL12RB2|pc|chr1:67313912:67314000:+	0	+
#Deleted in new
chr16	7328647	7328793	ENSG00000078328.20|RBFOX1|pc|chr16:7328647:7328793:+	0	+
#Partially deleted in new
chr16	73487427	73487744	ENSG00000258779.7|LINC01568|lncRNA|chr16:73487427:73487744:+	0	+
#Deleted in new
chr16	737980	738462	ENSG00000103245.13|NARFL|pc|chr16:737980:738462:-	0	-
#Deleted in new
chr16	73808471	73808505	ENSG00000283457.1|AC087565.2|lncRNA|chr16:73808471:73808505:+	0	+
#Deleted in new
chr16	73815587	73815688	ENSG00000259817.2|AC087565.1|lncRNA|chr16:73815587:73815688:+	0	+
#Partially deleted in new
chr16	73943077	73943922	ENSG00000261404.6|AC138627.1|lncRNA|chr16:73943077:73943922:-	0	-
#Deleted in new
chr16	73994607	73994715	ENSG00000261404.6|AC138627.1|lncRNA|chr16:73994607:73994715:-	0	-
#Deleted in new
chr16	74006603	74006777	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74006603:74006777:-	0	-
#Deleted in new
chr16	74016326	74016621	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74016326:74016621:-	0	-
#Deleted in new
chr16	74016429	74016621	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74016429:74016621:-	0	-
#Deleted in new
chr16	74103085	74103352	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74103085:74103352:-	0	-
#Deleted in new
chr16	74114303	74114486	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74114303:74114486:-	0	-
#Deleted in new
chr16	74114872	74114963	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74114872:74114963:-	0	-
#Deleted in new
chr16	74133640	74133682	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74133640:74133682:-	0	-
#Deleted in new
chr16	74150519	74151299	ENSG00000279100.1|AC009120.7|lncRNA|chr16:74150519:74151299:+	0	+
#Deleted in new
chr16	74181727	74181935	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74181727:74181935:-	0	-
#Deleted in new
chr16	74192391	74192726	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74192391:74192726:-	0	-
#Partially deleted in new
chr16	74215351	74215521	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74215351:74215521:-	0	-
#Deleted in new
chr16	74215965	74216002	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74215965:74216002:-	0	-
#Deleted in new
chr16	74280435	74280499	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74280435:74280499:-	0	-
#Deleted in new
chr16	74281400	74281539	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74281400:74281539:-	0	-
#Deleted in new
chr16	74282414	74282438	ENSG00000261248.1|AC009120.5|lncRNA|chr16:74282414:74282438:+	0	+
#Deleted in new
chr16	74287068	74287519	ENSG00000261248.1|AC009120.5|lncRNA|chr16:74287068:74287519:+	0	+
#Partially deleted in new
chr16	74289592	74291052	ENSG00000275236.1|AC009120.6|lncRNA|chr16:74289592:74291052:-	0	-
#Partially deleted in new
chr16	74296414	74296762	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74296414:74296762:-	0	-
#Deleted in new
chr16	74296422	74296533	ENSG00000261404.6|AC138627.1|lncRNA|chr16:74296422:74296533:-	0	-
#Deleted in new
chr16	74299575	74299745	ENSG00000103035.10|PSMD7|pc|chr16:74299575:74299745:+	0	+
#Deleted in new
chr16	74315145	74315634	ENSG00000260884.1|AC009120.4|lncRNA|chr16:74315145:74315634:+	0	+
#Deleted in new
chr16	74377877	74378039	ENSG00000196436.8|NPIPB15|pc|chr16:74377877:74378039:+	0	+
#Deleted in new
chr16	74381308	74381765	ENSG00000196436.8|NPIPB15|pc|chr16:74381308:74381765:+	0	+
#Deleted in new
chr16	74381515	74381698	ENSG00000196436.8|NPIPB15|pc|chr16:74381515:74381698:+	0	+
#Deleted in new
chr16	74385341	74385441	ENSG00000196436.8|NPIPB15|pc|chr16:74385341:74385441:+	0	+
#Deleted in new
chr16	74385553	74385749	ENSG00000196436.8|NPIPB15|pc|chr16:74385553:74385749:+	0	+
#Deleted in new
chr16	74389824	74389885	ENSG00000196436.8|NPIPB15|pc|chr16:74389824:74389885:+	0	+
#Deleted in new
chr16	74389994	74390030	ENSG00000196436.8|NPIPB15|pc|chr16:74389994:74390030:+	0	+
#Deleted in new
chr16	74391390	74392080	ENSG00000196436.8|NPIPB15|pc|chr16:74391390:74392080:+	0	+
#Deleted in new
chr16	74434442	74434608	ENSG00000261170.1|AC009053.3|lncRNA|chr16:74434442:74434608:+	0	+
#Deleted in new
chr16	74434442	74434699	ENSG00000261170.1|AC009053.3|lncRNA|chr16:74434442:74434699:+	0	+
#Deleted in new
chr16	74435169	74435254	ENSG00000261170.1|AC009053.3|lncRNA|chr16:74435169:74435254:+	0	+
#Partially deleted in new
chr16	74467755	74468405	ENSG00000090863.11|GLG1|pc|chr16:74467755:74468405:-	0	-
#Partially deleted in new
chr16	74472525	74472634	ENSG00000090863.11|GLG1|pc|chr16:74472525:74472634:-	0	-
#Partially deleted in new
chr16	74472589	74472634	ENSG00000090863.11|GLG1|pc|chr16:74472589:74472634:-	0	-
#Deleted in new
chr16	74563105	74563325	ENSG00000090863.11|GLG1|pc|chr16:74563105:74563325:-	0	-
#Partially deleted in new
chr16	74664334	74664745	ENSG00000168411.13|RFWD3|pc|chr16:74664334:74664745:-	0	-
#Deleted in new
chr16	74664623	74664745	ENSG00000168411.13|RFWD3|pc|chr16:74664623:74664745:-	0	-
#Deleted in new
chr16	74664689	74664745	ENSG00000168411.13|RFWD3|pc|chr16:74664689:74664745:-	0	-
#Deleted in new
chr16	74665232	74665280	ENSG00000168411.13|RFWD3|pc|chr16:74665232:74665280:-	0	-
#Deleted in new
chr16	74676300	74676425	ENSG00000168404.12|MLKL|pc|chr16:74676300:74676425:-	0	-
#Partially deleted in new
chr16	74682	74961	ENSG00000278995.1|Z69720.2|lncRNA|chr16:74682:74961:+	0	+
#Deleted in new
chr16	74915459	74915717	ENSG00000103091.14|WDR59|pc|chr16:74915459:74915717:-	0	-
#Deleted in new
chr16	74930767	74930792	ENSG00000103091.14|WDR59|pc|chr16:74930767:74930792:-	0	-
#Deleted in new
chr16	74959349	74959592	ENSG00000103091.14|WDR59|pc|chr16:74959349:74959592:-	0	-
#Deleted in new
chr16	74962819	74963247	ENSG00000103091.14|WDR59|pc|chr16:74962819:74963247:-	0	-
#Deleted in new
chr16	74979011	74979116	ENSG00000103091.14|WDR59|pc|chr16:74979011:74979116:-	0	-
#Deleted in new
chr16	74996971	74997173	ENSG00000103091.14|WDR59|pc|chr16:74996971:74997173:-	0	-
#Deleted in new
chr16	75046762	75046888	ENSG00000186187.11|ZNRF1|pc|chr16:75046762:75046888:+	0	+
#Deleted in new
chr16	75119557	75119582	ENSG00000261058.1|AC099508.2|lncRNA|chr16:75119557:75119582:+	0	+
#Deleted in new
chr16	75126175	75126312	ENSG00000261058.1|AC099508.2|lncRNA|chr16:75126175:75126312:+	0	+
#Deleted in new
chr16	75127830	75127951	ENSG00000261058.1|AC099508.2|lncRNA|chr16:75127830:75127951:+	0	+
#Deleted in new
chr16	75132508	75132622	ENSG00000261058.1|AC099508.2|lncRNA|chr16:75132508:75132622:+	0	+
#Deleted in new
chr16	75157136	75157211	ENSG00000184517.11|ZFP1|pc|chr16:75157136:75157211:+	0	+
#Partially deleted in new
chr16	75206089	75207159	ENSG00000168928.12|CTRB2|pc|chr16:75206089:75207159:-	0	-
#Duplicated in new
chr16	75222609	75222871	ENSG00000168925.10|CTRB1|pc|chr16:75222609:75222871:+	0	+
#Duplicated in new
chr16	75223447	75223607	ENSG00000168925.10|CTRB1|pc|chr16:75223447:75223607:+	0	+
#Duplicated in new
chr16	75223447	75223628	ENSG00000168925.10|CTRB1|pc|chr16:75223447:75223628:+	0	+
#Deleted in new
chr1	67522346	67522398	ENSG00000235200.2|LINC01702|lncRNA|chr1:67522346:67522398:+	0	+
#Deleted in new
chr1	67522353	67522398	ENSG00000235200.2|LINC01702|lncRNA|chr1:67522353:67522398:+	0	+
#Duplicated in new
chr16	75224054	75224188	ENSG00000168925.10|CTRB1|pc|chr16:75224054:75224188:+	0	+
#Partially deleted in new
chr16	75250668	75250947	ENSG00000050820.16|BCAR1|pc|chr16:75250668:75250947:-	0	-
#Deleted in new
chr1	67527377	67527437	ENSG00000235200.2|LINC01702|lncRNA|chr1:67527377:67527437:+	0	+
#Deleted in new
chr1	67529627	67529749	ENSG00000235200.2|LINC01702|lncRNA|chr1:67529627:67529749:+	0	+
#Deleted in new
chr1	67529652	67529749	ENSG00000235200.2|LINC01702|lncRNA|chr1:67529652:67529749:+	0	+
#Deleted in new
chr16	75301756	75301905	ENSG00000153774.8|CFDP1|pc|chr16:75301756:75301905:-	0	-
#Deleted in new
chr1	67530314	67530378	ENSG00000235200.2|LINC01702|lncRNA|chr1:67530314:67530378:+	0	+
#Deleted in new
chr1	67532105	67532326	ENSG00000235200.2|LINC01702|lncRNA|chr1:67532105:67532326:+	0	+
#Deleted in new
chr1	67532105	67532612	ENSG00000235200.2|LINC01702|lncRNA|chr1:67532105:67532612:+	0	+
#Deleted in new
chr16	75321889	75321933	ENSG00000259999.1|AC009054.1|lncRNA|chr16:75321889:75321933:-	0	-
#Deleted in new
chr16	75379817	75380134	ENSG00000261783.1|AC009054.2|lncRNA|chr16:75379817:75380134:-	0	-
#Deleted in new
chr16	75381203	75381260	ENSG00000261783.1|AC009054.2|lncRNA|chr16:75381203:75381260:-	0	-
#Deleted in new
chr16	75391281	75391508	ENSG00000153774.8|CFDP1|pc|chr16:75391281:75391508:-	0	-
#Deleted in new
chr16	75391379	75391508	ENSG00000153774.8|CFDP1|pc|chr16:75391379:75391508:-	0	-
#Deleted in new
chr16	75406571	75406698	ENSG00000153774.8|CFDP1|pc|chr16:75406571:75406698:-	0	-
#Deleted in new
chr16	75419017	75419193	ENSG00000153774.8|CFDP1|pc|chr16:75419017:75419193:-	0	-
#Partially deleted in new
chr16	75433835	75436392	ENSG00000274220.1|AC009163.7|lncRNA|chr16:75433835:75436392:+	0	+
#Deleted in new
chr16	75452638	75452697	ENSG00000166822.12|TMEM170A|pc|chr16:75452638:75452697:-	0	-
#Deleted in new
chr16	75458251	75458975	ENSG00000261476.1|AC009163.3|lncRNA|chr16:75458251:75458975:-	0	-
#Partially deleted in new
chr16	75464231	75464416	ENSG00000166822.12|TMEM170A|pc|chr16:75464231:75464416:-	0	-
#Deleted in new
chr16	75465478	75465497	ENSG00000166822.12|TMEM170A|pc|chr16:75465478:75465497:-	0	-
#Partially deleted in new
chr16	75472051	75479844	ENSG00000183196.8|CHST6|pc|chr16:75472051:75479844:-	0	-
#Deleted in new
chr16	75475895	75476320	ENSG00000203472.3|AC009163.1|lncRNA|chr16:75475895:75476320:+	0	+
#Deleted in new
chr16	75481816	75481891	ENSG00000183196.8|CHST6|pc|chr16:75481816:75481891:-	0	-
#Deleted in new
chr16	75490613	75490769	ENSG00000183196.8|CHST6|pc|chr16:75490613:75490769:-	0	-
#Deleted in new
chr16	75531575	75531640	ENSG00000135702.14|CHST5|pc|chr16:75531575:75531640:-	0	-
#Deleted in new
chr16	75531575	75531640	ENSG00000260092.1|AC009163.2|pc|chr16:75531575:75531640:-	0	-
#Deleted in new
chr16	75545976	75546077	ENSG00000205084.10|TMEM231|pc|chr16:75545976:75546077:-	0	-
#Deleted in new
chr16	75556391	75557059	ENSG00000276408.1|AC025287.2|lncRNA|chr16:75556391:75557059:+	0	+
#Deleted in new
chr16	75596980	75597389	ENSG00000065457.10|ADAT1|pc|chr16:75596980:75597389:-	0	-
#Deleted in new
chr16	75598132	75598331	ENSG00000065457.10|ADAT1|pc|chr16:75598132:75598331:-	0	-
#Deleted in new
chr16	75601831	75602003	ENSG00000065457.10|ADAT1|pc|chr16:75601831:75602003:-	0	-
#Deleted in new
chr16	75619631	75619743	ENSG00000065457.10|ADAT1|pc|chr16:75619631:75619743:-	0	-
#Deleted in new
chr16	75622791	75623259	ENSG00000065457.10|ADAT1|pc|chr16:75622791:75623259:-	0	-
#Deleted in new
chr16	75623237	75623275	ENSG00000065457.10|ADAT1|pc|chr16:75623237:75623275:-	0	-
#Deleted in new
chr16	75623237	75623281	ENSG00000065457.10|ADAT1|pc|chr16:75623237:75623281:-	0	-
#Deleted in new
chr16	75623237	75623300	ENSG00000065457.10|ADAT1|pc|chr16:75623237:75623300:-	0	-
#Deleted in new
chr16	75676986	75677009	ENSG00000284484.1|AC025287.4|pc|chr16:75676986:75677009:-	0	-
#Deleted in new
chr16	75726417	75726442	ENSG00000283755.1|AC009122.1|pc|chr16:75726417:75726442:-	0	-
#Deleted in new
chr16	75760832	75761872	ENSG00000166848.5|TERF2IP|pc|chr16:75760832:75761872:+	0	+
#Deleted in new
chr16	75838629	75838900	ENSG00000261313.1|AC105430.1|lncRNA|chr16:75838629:75838900:-	0	-
#Deleted in new
chr16	75838772	75838900	ENSG00000261313.1|AC105430.1|lncRNA|chr16:75838772:75838900:-	0	-
#Deleted in new
chr16	75838835	75838900	ENSG00000261313.1|AC105430.1|lncRNA|chr16:75838835:75838900:-	0	-
#Deleted in new
chr16	75851426	75851622	ENSG00000261313.1|AC105430.1|lncRNA|chr16:75851426:75851622:-	0	-
#Deleted in new
chr16	75851430	75851622	ENSG00000261313.1|AC105430.1|lncRNA|chr16:75851430:75851622:-	0	-
#Deleted in new
chr16	75851442	75851622	ENSG00000261313.1|AC105430.1|lncRNA|chr16:75851442:75851622:-	0	-
#Partially deleted in new
chr16	760766	761174	ENSG00000102854.15|MSLN|pc|chr16:760766:761174:+	0	+
#Deleted in new
chr16	761072	761174	ENSG00000102854.15|MSLN|pc|chr16:761072:761174:+	0	+
#Deleted in new
chr16	76107282	76107503	ENSG00000260223.1|AC099511.1|lncRNA|chr16:76107282:76107503:-	0	-
#Deleted in new
chr16	76108235	76108342	ENSG00000260223.1|AC099511.1|lncRNA|chr16:76108235:76108342:-	0	-
#Deleted in new
chr16	761088	761174	ENSG00000102854.15|MSLN|pc|chr16:761088:761174:+	0	+
#Deleted in new
chr16	761097	761174	ENSG00000102854.15|MSLN|pc|chr16:761097:761174:+	0	+
#Deleted in new
chr16	761132	761174	ENSG00000102854.15|MSLN|pc|chr16:761132:761174:+	0	+
#Deleted in new
chr16	76140361	76140403	ENSG00000260223.1|AC099511.1|lncRNA|chr16:76140361:76140403:-	0	-
#Partially deleted in new
chr16	76147559	76147779	ENSG00000260223.1|AC099511.1|lncRNA|chr16:76147559:76147779:-	0	-
#Partially deleted in new
chr16	76147559	76147806	ENSG00000260223.1|AC099511.1|lncRNA|chr16:76147559:76147806:-	0	-
#Deleted in new
chr16	7614866	7614992	ENSG00000261198.1|AC005774.1|lncRNA|chr16:7614866:7614992:-	0	-
#Deleted in new
chr16	76309852	76309906	ENSG00000152910.18|CNTNAP4|pc|chr16:76309852:76309906:+	0	+
#Deleted in new
chr16	76309879	76309906	ENSG00000152910.18|CNTNAP4|pc|chr16:76309879:76309906:+	0	+
#Deleted in new
chr16	76309896	76309906	ENSG00000152910.18|CNTNAP4|pc|chr16:76309896:76309906:+	0	+
#Deleted in new
chr16	76634997	76635149	ENSG00000250514.1|LINC02125|lncRNA|chr16:76634997:76635149:+	0	+
#Deleted in new
chr16	76635496	76635623	ENSG00000250514.1|LINC02125|lncRNA|chr16:76635496:76635623:+	0	+
#Deleted in new
chr16	76635496	76635623	ENSG00000261833.2|AC104151.1|pc|chr16:76635496:76635623:+	0	+
#Deleted in new
chr1	6769726	6769776	ENSG00000284744.1|AL591163.1|lncRNA|chr1:6769726:6769776:+	0	+
#Deleted in new
chr1	6769910	6770038	ENSG00000284744.1|AL591163.1|lncRNA|chr1:6769910:6770038:+	0	+
#Deleted in new
chr16	77234876	77234949	ENSG00000260922.1|AC009139.1|lncRNA|chr16:77234876:77234949:+	0	+
#Deleted in new
chr16	77249893	77249957	ENSG00000261063.1|AC009139.2|lncRNA|chr16:77249893:77249957:-	0	-
#Deleted in new
chr16	77610536	77610681	ENSG00000261154.1|LINC02131|lncRNA|chr16:77610536:77610681:+	0	+
#Deleted in new
chr16	77735393	77735507	ENSG00000140876.11|NUDT7|pc|chr16:77735393:77735507:+	0	+
#Deleted in new
chr16	77736649	77736743	ENSG00000140876.11|NUDT7|pc|chr16:77736649:77736743:+	0	+
#Deleted in new
chr16	77737404	77737453	ENSG00000140876.11|NUDT7|pc|chr16:77737404:77737453:+	0	+
#Deleted in new
chr16	78029088	78029147	ENSG00000166509.10|CLEC3A|pc|chr16:78029088:78029147:+	0	+
#Deleted in new
chr16	78051957	78052149	ENSG00000166509.10|CLEC3A|pc|chr16:78051957:78052149:+	0	+
#Deleted in new
chr16	78059413	78059454	ENSG00000261540.1|AC079414.1|lncRNA|chr16:78059413:78059454:-	0	-
#Deleted in new
chr16	78065976	78066761	ENSG00000166509.10|CLEC3A|pc|chr16:78065976:78066761:+	0	+
#Deleted in new
chr16	78111819	78111992	ENSG00000186153.16|WWOX|pc|chr16:78111819:78111992:+	0	+
#Deleted in new
chr16	78130048	78130145	ENSG00000186153.16|WWOX|pc|chr16:78130048:78130145:+	0	+
#Deleted in new
chr16	78145916	78145933	ENSG00000186153.16|WWOX|pc|chr16:78145916:78145933:+	0	+
#Partially deleted in new
chr16	78241197	78241218	ENSG00000260969.1|WWOX-AS1|lncRNA|chr16:78241197:78241218:-	0	-
#Deleted in new
chr16	78264468	78264870	ENSG00000186153.16|WWOX|pc|chr16:78264468:78264870:+	0	+
#Deleted in new
chr16	78265953	78266059	ENSG00000186153.16|WWOX|pc|chr16:78265953:78266059:+	0	+
#Deleted in new
chr16	78267070	78267131	ENSG00000186153.16|WWOX|pc|chr16:78267070:78267131:+	0	+
#Deleted in new
chr16	78280840	78281049	ENSG00000186153.16|WWOX|pc|chr16:78280840:78281049:+	0	+
#Deleted in new
chr16	78495925	78496431	ENSG00000260733.1|AC046158.1|lncRNA|chr16:78495925:78496431:-	0	-
#Deleted in new
chr16	78534373	78534553	ENSG00000261837.1|AC046158.2|lncRNA|chr16:78534373:78534553:+	0	+
#Partially deleted in new
chr16	78550738	78553290	ENSG00000279129.1|AC046158.3|lncRNA|chr16:78550738:78553290:-	0	-
#Partially deleted in new
chr16	78550738	78553296	ENSG00000279129.1|AC046158.3|lncRNA|chr16:78550738:78553296:-	0	-
#Deleted in new
chr16	78780414	78780449	ENSG00000186153.16|WWOX|pc|chr16:78780414:78780449:+	0	+
#Partially deleted in new
chr16	78872738	78873505	ENSG00000280115.1|AC136603.1|lncRNA|chr16:78872738:78873505:+	0	+
#Deleted in new
chr16	7894252	7894395	ENSG00000260289.1|AC093515.1|lncRNA|chr16:7894252:7894395:-	0	-
#Partially deleted in new
chr16	78981721	78981843	ENSG00000279732.1|AC027279.3|lncRNA|chr16:78981721:78981843:-	0	-
#Partially deleted in new
chr16	79016135	79017429	ENSG00000280274.1|AC009145.4|lncRNA|chr16:79016135:79017429:+	0	+
#Deleted in new
chr16	79105956	79105992	ENSG00000260511.1|AC009145.2|lncRNA|chr16:79105956:79105992:+	0	+
#Deleted in new
chr16	79106619	79106760	ENSG00000260511.1|AC009145.2|lncRNA|chr16:79106619:79106760:+	0	+
#Partially deleted in new
chr16	79505602	79505708	ENSG00000261472.1|AC084064.1|lncRNA|chr16:79505602:79505708:+	0	+
#Deleted in new
chr16	79515980	79516293	ENSG00000261472.1|AC084064.1|lncRNA|chr16:79515980:79516293:+	0	+
#Deleted in new
chr1	67955404	67955784	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:67955404:67955784:+	0	+
#Deleted in new
chr1	67956155	67956262	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:67956155:67956262:+	0	+
#Deleted in new
chr16	79726356	79726429	ENSG00000260876.5|LINC01229|lncRNA|chr16:79726356:79726429:+	0	+
#Partially deleted in new
chr16	79770021	79770301	ENSG00000261390.5|MAFTRR|lncRNA|chr16:79770021:79770301:-	0	-
#Partially deleted in new
chr16	79798831	79799090	ENSG00000260876.5|LINC01229|lncRNA|chr16:79798831:79799090:+	0	+
#Split in new
chr16	798040	798186	ENSG00000127586.16|CHTF18|pc|chr16:798040:798186:+	0	+
#Deleted in new
chr16	79807420	79807922	ENSG00000260876.5|LINC01229|lncRNA|chr16:79807420:79807922:+	0	+
#Deleted in new
chr16	80040661	80040794	ENSG00000260237.1|AC092130.1|lncRNA|chr16:80040661:80040794:+	0	+
#Deleted in new
chr16	80159336	80159455	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80159336:80159455:-	0	-
#Deleted in new
chr16	80160231	80160306	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80160231:80160306:-	0	-
#Deleted in new
chr16	80167403	80167577	ENSG00000260706.5|AC022166.1|lncRNA|chr16:80167403:80167577:+	0	+
#Deleted in new
chr16	80218808	80218866	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80218808:80218866:-	0	-
#Deleted in new
chr1	68024518	68024638	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:68024518:68024638:+	0	+
#Deleted in new
chr1	68026573	68026762	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:68026573:68026762:+	0	+
#Deleted in new
chr1	68034646	68034763	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:68034646:68034763:+	0	+
#Deleted in new
chr16	80491216	80491571	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80491216:80491571:-	0	-
#Deleted in new
chr16	80492569	80492765	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80492569:80492765:-	0	-
#Deleted in new
chr1	68050547	68050798	ENSG00000162595.5|DIRAS3|pc|chr1:68050547:68050798:-	0	-
#Deleted in new
chr1	68050883	68050997	ENSG00000162595.5|DIRAS3|pc|chr1:68050883:68050997:-	0	-
#Deleted in new
chr1	68051424	68051631	ENSG00000162595.5|DIRAS3|pc|chr1:68051424:68051631:-	0	-
#Deleted in new
chr16	80526838	80527018	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80526838:80527018:-	0	-
#Deleted in new
chr16	80528641	80528786	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80528641:80528786:-	0	-
#Deleted in new
chr16	80540604	80540877	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80540604:80540877:-	0	-
#Deleted in new
chr16	80540733	80540854	ENSG00000168589.14|DYNLRB2|pc|chr16:80540733:80540854:+	0	+
#Deleted in new
chr16	80540849	80540867	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80540849:80540867:-	0	-
#Deleted in new
chr16	80540849	80540870	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80540849:80540870:-	0	-
#Partially deleted in new
chr16	80540849	80540947	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80540849:80540947:-	0	-
#Deleted in new
chr16	805442	805910	ENSG00000167945.1|PRR25|pc|chr16:805442:805910:+	0	+
#Deleted in new
chr16	80544698	80544797	ENSG00000168589.14|DYNLRB2|pc|chr16:80544698:80544797:+	0	+
#Deleted in new
chr16	80552323	80552514	ENSG00000260183.1|AC108097.1|lncRNA|chr16:80552323:80552514:-	0	-
#Deleted in new
chr16	80563028	80563135	ENSG00000259867.5|AC105411.1|lncRNA|chr16:80563028:80563135:-	0	-
#Deleted in new
chr16	80566793	80567093	ENSG00000260737.5|LINC01227|lncRNA|chr16:80566793:80567093:-	0	-
#Deleted in new
chr16	80567947	80568113	ENSG00000260737.5|LINC01227|lncRNA|chr16:80567947:80568113:-	0	-
#Partially deleted in new
chr16	80568815	80569687	ENSG00000260737.5|LINC01227|lncRNA|chr16:80568815:80569687:-	0	-
#Deleted in new
chr16	80569224	80569270	ENSG00000260737.5|LINC01227|lncRNA|chr16:80569224:80569270:-	0	-
#Deleted in new
chr16	80627550	80628379	ENSG00000260064.1|AC092332.1|lncRNA|chr16:80627550:80628379:-	0	-
#Deleted in new
chr16	80632636	80632927	ENSG00000166446.14|CDYL2|pc|chr16:80632636:80632927:-	0	-
#Deleted in new
chr16	80639669	80639736	ENSG00000166446.14|CDYL2|pc|chr16:80639669:80639736:-	0	-
#Deleted in new
chr16	80662744	80662747	ENSG00000166446.14|CDYL2|pc|chr16:80662744:80662747:-	0	-
#Deleted in new
chr16	80670943	80670946	ENSG00000166446.14|CDYL2|pc|chr16:80670943:80670946:-	0	-
#Deleted in new
chr1	68071799	68071873	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:68071799:68071873:+	0	+
#Deleted in new
chr16	80735102	80735133	ENSG00000166446.14|CDYL2|pc|chr16:80735102:80735133:-	0	-
#Partially deleted in new
chr16	80736359	80736515	ENSG00000260594.1|AC099313.1|lncRNA|chr16:80736359:80736515:+	0	+
#Deleted in new
chr16	80738660	80738748	ENSG00000260594.1|AC099313.1|lncRNA|chr16:80738660:80738748:+	0	+
#Deleted in new
chr16	807471	807646	ENSG00000167945.1|PRR25|pc|chr16:807471:807646:+	0	+
#Partially deleted in new
chr16	80828734	80830757	ENSG00000260896.5|LINC02170|lncRNA|chr16:80828734:80830757:-	0	-
#Deleted in new
chr16	80835656	80835789	ENSG00000260896.5|LINC02170|lncRNA|chr16:80835656:80835789:-	0	-
#Deleted in new
chr16	80840118	80840222	ENSG00000260896.5|LINC02170|lncRNA|chr16:80840118:80840222:-	0	-
#Deleted in new
chr16	80870447	80870520	ENSG00000260896.5|LINC02170|lncRNA|chr16:80870447:80870520:-	0	-
#Deleted in new
chr16	80892504	80892560	ENSG00000260896.5|LINC02170|lncRNA|chr16:80892504:80892560:-	0	-
#Deleted in new
chr16	80892504	80892595	ENSG00000260896.5|LINC02170|lncRNA|chr16:80892504:80892595:-	0	-
#Partially deleted in new
chr16	80966447	80976179	ENSG00000103121.8|CMC2|pc|chr16:80966447:80976179:-	0	-
#Deleted in new
chr16	80978241	80978415	ENSG00000103121.8|CMC2|pc|chr16:80978241:80978415:-	0	-
#Deleted in new
chr16	80980769	80980879	ENSG00000103121.8|CMC2|pc|chr16:80980769:80980879:-	0	-
#Deleted in new
chr16	80980788	80980879	ENSG00000103121.8|CMC2|pc|chr16:80980788:80980879:-	0	-
#Deleted in new
chr16	80980807	80980879	ENSG00000103121.8|CMC2|pc|chr16:80980807:80980879:-	0	-
#Deleted in new
chr16	80980829	80980879	ENSG00000103121.8|CMC2|pc|chr16:80980829:80980879:-	0	-
#Partially deleted in new
chr16	80982318	80984094	ENSG00000278985.1|AC092718.7|lncRNA|chr16:80982318:80984094:-	0	-
#Deleted in new
chr16	80983181	80983335	ENSG00000103121.8|CMC2|pc|chr16:80983181:80983335:-	0	-
#Deleted in new
chr1	68098472	68098753	ENSG00000116729.13|WLS|pc|chr1:68098472:68098753:-	0	-
#Deleted in new
chr1	68098642	68098836	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:68098642:68098836:+	0	+
#Deleted in new
chr16	80988539	80988596	ENSG00000103121.8|CMC2|pc|chr16:80988539:80988596:-	0	-
#Deleted in new
chr16	80991753	80991955	ENSG00000103121.8|CMC2|pc|chr16:80991753:80991955:-	0	-
#Deleted in new
chr16	80991753	80991957	ENSG00000103121.8|CMC2|pc|chr16:80991753:80991957:-	0	-
#Deleted in new
chr1	68099728	68099792	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:68099728:68099792:+	0	+
#Partially deleted in new
chr16	80997313	80998949	ENSG00000103121.8|CMC2|pc|chr16:80997313:80998949:-	0	-
#Deleted in new
chr16	80998284	80998351	ENSG00000103121.8|CMC2|pc|chr16:80998284:80998351:-	0	-
#Deleted in new
chr16	80998284	80998354	ENSG00000103121.8|CMC2|pc|chr16:80998284:80998354:-	0	-
#Deleted in new
chr16	80998284	80998473	ENSG00000103121.8|CMC2|pc|chr16:80998284:80998473:-	0	-
#Deleted in new
chr16	80998284	80998659	ENSG00000103121.8|CMC2|pc|chr16:80998284:80998659:-	0	-
#Deleted in new
chr16	81001247	81001334	ENSG00000103121.8|CMC2|pc|chr16:81001247:81001334:-	0	-
#Deleted in new
chr16	81006733	81006839	ENSG00000103121.8|CMC2|pc|chr16:81006733:81006839:-	0	-
#Deleted in new
chr16	81006733	81006854	ENSG00000103121.8|CMC2|pc|chr16:81006733:81006854:-	0	-
#Deleted in new
chr16	81006733	81006858	ENSG00000103121.8|CMC2|pc|chr16:81006733:81006858:-	0	-
#Deleted in new
chr16	81006733	81006871	ENSG00000103121.8|CMC2|pc|chr16:81006733:81006871:-	0	-
#Deleted in new
chr16	81006733	81006873	ENSG00000103121.8|CMC2|pc|chr16:81006733:81006873:-	0	-
#Deleted in new
chr16	81006733	81006875	ENSG00000103121.8|CMC2|pc|chr16:81006733:81006875:-	0	-
#Deleted in new
chr16	81006733	81006886	ENSG00000103121.8|CMC2|pc|chr16:81006733:81006886:-	0	-
#Partially deleted in new
chr16	81006733	81006892	ENSG00000103121.8|CMC2|pc|chr16:81006733:81006892:-	0	-
#Partially deleted in new
chr16	81006733	81006894	ENSG00000103121.8|CMC2|pc|chr16:81006733:81006894:-	0	-
#Partially deleted in new
chr16	81006733	81006895	ENSG00000103121.8|CMC2|pc|chr16:81006733:81006895:-	0	-
#Partially deleted in new
chr16	81006733	81006897	ENSG00000103121.8|CMC2|pc|chr16:81006733:81006897:-	0	-
#Deleted in new
chr1	68100697	68100774	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:68100697:68100774:+	0	+
#Deleted in new
chr16	81016791	81017035	ENSG00000260213.5|AC092718.2|lncRNA|chr16:81016791:81017035:-	0	-
#Deleted in new
chr16	81020397	81020501	ENSG00000260213.5|AC092718.2|lncRNA|chr16:81020397:81020501:-	0	-
#Partially deleted in new
chr16	81022315	81024605	ENSG00000284512.1|AC092718.8|pc|chr16:81022315:81024605:-	0	-
#Partially deleted in new
chr16	81022726	81022874	ENSG00000166451.13|CENPN|pc|chr16:81022726:81022874:+	0	+
#Partially deleted in new
chr16	81022754	81022885	ENSG00000166451.13|CENPN|pc|chr16:81022754:81022885:+	0	+
#Deleted in new
chr16	81023357	81023523	ENSG00000260213.5|AC092718.2|lncRNA|chr16:81023357:81023523:-	0	-
#Partially deleted in new
chr16	81024054	81024605	ENSG00000260213.5|AC092718.2|lncRNA|chr16:81024054:81024605:-	0	-
#Partially deleted in new
chr16	81024298	81024605	ENSG00000284512.1|AC092718.8|pc|chr16:81024298:81024605:-	0	-
#Deleted in new
chr1	68102654	68102727	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:68102654:68102727:+	0	+
#Deleted in new
chr16	81030769	81031485	ENSG00000261061.1|AC092718.4|lncRNA|chr16:81030769:81031485:+	0	+
#Deleted in new
chr16	81032569	81033114	ENSG00000166451.13|CENPN|pc|chr16:81032569:81033114:+	0	+
#Deleted in new
chr16	81034754	81034926	ENSG00000260213.5|AC092718.2|lncRNA|chr16:81034754:81034926:-	0	-
#Deleted in new
chr16	81034754	81034926	ENSG00000284512.1|AC092718.8|pc|chr16:81034754:81034926:-	0	-
#Partially deleted in new
chr16	81040524	81041481	ENSG00000166454.9|ATMIN|pc|chr16:81040524:81041481:+	0	+
#Deleted in new
chr16	81055300	81055462	ENSG00000261141.1|AC092718.5|lncRNA|chr16:81055300:81055462:+	0	+
#Deleted in new
chr16	81055995	81056426	ENSG00000261141.1|AC092718.5|lncRNA|chr16:81055995:81056426:+	0	+
#Deleted in new
chr16	81057904	81058064	ENSG00000260643.2|AC092718.3|pc|chr16:81057904:81058064:-	0	-
#Deleted in new
chr16	81066192	81066281	ENSG00000166455.13|C16orf46|pc|chr16:81066192:81066281:-	0	-
#Deleted in new
chr16	81066192	81066281	ENSG00000260643.2|AC092718.3|pc|chr16:81066192:81066281:-	0	-
#Deleted in new
chr16	81069853	81069941	ENSG00000261838.5|AC092718.6|lncRNA|chr16:81069853:81069941:+	0	+
#Deleted in new
chr16	81071997	81072230	ENSG00000261838.5|AC092718.6|lncRNA|chr16:81071997:81072230:+	0	+
#Deleted in new
chr16	81076423	81076598	ENSG00000261838.5|AC092718.6|lncRNA|chr16:81076423:81076598:+	0	+
#Deleted in new
chr16	81077318	81077876	ENSG00000245059.2|AC092718.1|lncRNA|chr16:81077318:81077876:+	0	+
#Deleted in new
chr16	81078331	81078861	ENSG00000245059.2|AC092718.1|lncRNA|chr16:81078331:81078861:+	0	+
#Deleted in new
chr16	81083762	81083941	ENSG00000140905.10|GCSH|pc|chr16:81083762:81083941:-	0	-
#Deleted in new
chr1	68117450	68117732	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:68117450:68117732:+	0	+
#Deleted in new
chr1	68121124	68121241	ENSG00000232284.7|GNG12-AS1|lncRNA|chr1:68121124:68121241:+	0	+
#Deleted in new
chr16	813295	813861	ENSG00000167945.1|PRR25|pc|chr16:813295:813861:+	0	+
#Deleted in new
chr16	81371862	81372024	ENSG00000261609.5|GAN|pc|chr16:81371862:81372024:+	0	+
#Deleted in new
chr16	81386849	81387560	ENSG00000272923.1|AC092139.2|lncRNA|chr16:81386849:81387560:+	0	+
#Deleted in new
chr16	81463891	81464859	ENSG00000279021.1|AC092139.3|lncRNA|chr16:81463891:81464859:-	0	-
#Deleted in new
chr16	81606947	81606959	ENSG00000153815.16|CMIP|pc|chr16:81606947:81606959:+	0	+
#Deleted in new
chr16	81617037	81617543	ENSG00000279681.1|AC092135.2|lncRNA|chr16:81617037:81617543:-	0	-
#Partially deleted in new
chr16	81618504	81620563	ENSG00000279294.1|AC092135.1|lncRNA|chr16:81618504:81620563:+	0	+
#Partially deleted in new
chr16	81630192	81632038	ENSG00000279841.1|AC092135.3|lncRNA|chr16:81630192:81632038:+	0	+
#Deleted in new
chr16	81664268	81664349	ENSG00000153815.16|CMIP|pc|chr16:81664268:81664349:+	0	+
#Deleted in new
chr16	81664268	81667276	ENSG00000153815.16|CMIP|pc|chr16:81664268:81667276:+	0	+
#Partially deleted in new
chr16	81695436	81698121	ENSG00000153815.16|CMIP|pc|chr16:81695436:81698121:+	0	+
#Partially deleted in new
chr16	81696559	81697847	ENSG00000153815.16|CMIP|pc|chr16:81696559:81697847:+	0	+
#Deleted in new
chr16	81738247	81738502	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81738247:81738502:+	0	+
#Deleted in new
chr16	81739073	81739436	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81739073:81739436:+	0	+
#Deleted in new
chr16	81739081	81739385	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81739081:81739385:+	0	+
#Deleted in new
chr16	81739096	81739385	ENSG00000197943.9|PLCG2|pc|chr16:81739096:81739385:+	0	+
#Deleted in new
chr16	81739102	81739436	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81739102:81739436:+	0	+
#Deleted in new
chr16	81739147	81739281	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81739147:81739281:+	0	+
#Deleted in new
chr16	81739302	81739734	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81739302:81739734:+	0	+
#Deleted in new
chr16	81739336	81739436	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81739336:81739436:+	0	+
#Deleted in new
chr16	81739625	81739734	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81739625:81739734:+	0	+
#Deleted in new
chr16	81740259	81740379	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81740259:81740379:+	0	+
#Deleted in new
chr16	81740263	81740379	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81740263:81740379:+	0	+
#Deleted in new
chr16	81740465	81740587	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81740465:81740587:+	0	+
#Deleted in new
chr16	81755823	81755966	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81755823:81755966:+	0	+
#Deleted in new
chr16	81755869	81755966	ENSG00000197943.9|PLCG2|pc|chr16:81755869:81755966:+	0	+
#Deleted in new
chr16	81755869	81755966	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81755869:81755966:+	0	+
#Deleted in new
chr16	81766723	81766772	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81766723:81766772:+	0	+
#Deleted in new
chr16	81766723	81766797	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81766723:81766797:+	0	+
#Deleted in new
chr16	81766723	81766887	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81766723:81766887:+	0	+
#Deleted in new
chr16	81766723	81766962	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81766723:81766962:+	0	+
#Deleted in new
chr16	81767474	81767868	ENSG00000261218.5|AC099524.1|lncRNA|chr16:81767474:81767868:+	0	+
#Deleted in new
chr16	81798465	81798982	ENSG00000197943.9|PLCG2|pc|chr16:81798465:81798982:+	0	+
#Deleted in new
chr16	81852049	81852126	ENSG00000197943.9|PLCG2|pc|chr16:81852049:81852126:+	0	+
#Partially deleted in new
chr16	81857944	81858356	ENSG00000197943.9|PLCG2|pc|chr16:81857944:81858356:+	0	+
#Deleted in new
chr1	68186539	68186649	ENSG00000116729.13|WLS|pc|chr1:68186539:68186649:-	0	-
#Deleted in new
chr16	81889338	81889399	ENSG00000197943.9|PLCG2|pc|chr16:81889338:81889399:+	0	+
#Deleted in new
chr16	81897875	81898656	ENSG00000197943.9|PLCG2|pc|chr16:81897875:81898656:+	0	+
#Deleted in new
chr16	81906216	81906384	ENSG00000197943.9|PLCG2|pc|chr16:81906216:81906384:+	0	+
#Deleted in new
chr16	81987947	81988005	ENSG00000276519.1|AC092142.2|lncRNA|chr16:81987947:81988005:+	0	+
#Partially deleted in new
chr16	81988720	81989016	ENSG00000276519.1|AC092142.2|lncRNA|chr16:81988720:81989016:+	0	+
#Deleted in new
chr16	82007640	82007868	ENSG00000184860.9|SDR42E1|pc|chr16:82007640:82007868:-	0	-
#Deleted in new
chr16	82052292	82052458	ENSG00000261235.1|AC092142.1|lncRNA|chr16:82052292:82052458:-	0	-
#Deleted in new
chr16	82056452	82056513	ENSG00000086696.10|HSD17B2|pc|chr16:82056452:82056513:+	0	+
#Deleted in new
chr16	82063092	82063222	ENSG00000261235.1|AC092142.1|lncRNA|chr16:82063092:82063222:-	0	-
#Deleted in new
chr16	82063092	82063253	ENSG00000261235.1|AC092142.1|lncRNA|chr16:82063092:82063253:-	0	-
#Deleted in new
chr16	82139588	82139631	ENSG00000261235.1|AC092142.1|lncRNA|chr16:82139588:82139631:-	0	-
#Deleted in new
chr16	82162211	82162313	ENSG00000135698.9|MPHOSPH6|pc|chr16:82162211:82162313:-	0	-
#Deleted in new
chr16	82164651	82164741	ENSG00000135698.9|MPHOSPH6|pc|chr16:82164651:82164741:-	0	-
#Deleted in new
chr16	82164651	82164940	ENSG00000135698.9|MPHOSPH6|pc|chr16:82164651:82164940:-	0	-
#Deleted in new
chr16	82167539	82167597	ENSG00000135698.9|MPHOSPH6|pc|chr16:82167539:82167597:-	0	-
#Deleted in new
chr16	82170295	82170347	ENSG00000261029.1|AC138304.1|lncRNA|chr16:82170295:82170347:+	0	+
#Partially deleted in new
chr16	82495992	82496052	ENSG00000261285.5|AC009117.3|lncRNA|chr16:82495992:82496052:-	0	-
#Deleted in new
chr16	82510718	82510896	ENSG00000261285.5|AC009117.3|lncRNA|chr16:82510718:82510896:-	0	-
#Deleted in new
chr16	82510718	82510919	ENSG00000261285.5|AC009117.3|lncRNA|chr16:82510718:82510919:-	0	-
#Deleted in new
chr16	82637620	82637767	ENSG00000140945.16|CDH13|pc|chr16:82637620:82637767:+	0	+
#Deleted in new
chr16	82639359	82639465	ENSG00000140945.16|CDH13|pc|chr16:82639359:82639465:+	0	+
#Partially deleted in new
chr16	82646234	82646332	ENSG00000140945.16|CDH13|pc|chr16:82646234:82646332:+	0	+
#Deleted in new
chr16	8276991	8277149	ENSG00000260003.1|AC018767.2|lncRNA|chr16:8276991:8277149:-	0	-
#Partially deleted in new
chr16	82823211	82826703	ENSG00000260862.1|AC099506.1|lncRNA|chr16:82823211:82826703:+	0	+
#Deleted in new
chr16	8289434	8289570	ENSG00000260003.1|AC018767.2|lncRNA|chr16:8289434:8289570:-	0	-
#Deleted in new
chr16	8298491	8299772	ENSG00000261319.1|LINC02152|lncRNA|chr16:8298491:8299772:+	0	+
#Deleted in new
chr16	8313629	8313753	ENSG00000260058.1|AC018767.3|lncRNA|chr16:8313629:8313753:+	0	+
#Deleted in new
chr16	83383006	83383200	ENSG00000261410.1|AC009142.1|lncRNA|chr16:83383006:83383200:-	0	-
#Deleted in new
chr16	83383015	83383200	ENSG00000261410.1|AC009142.1|lncRNA|chr16:83383015:83383200:-	0	-
#Partially deleted in new
chr16	83396595	83396728	ENSG00000261410.1|AC009142.1|lncRNA|chr16:83396595:83396728:-	0	-
#Deleted in new
chr16	83397345	83397492	ENSG00000261410.1|AC009142.1|lncRNA|chr16:83397345:83397492:-	0	-
#Deleted in new
chr16	83654819	83655266	ENSG00000140945.16|CDH13|pc|chr16:83654819:83655266:+	0	+
#Deleted in new
chr16	8369863	8369988	ENSG00000259819.1|AC018767.1|lncRNA|chr16:8369863:8369988:+	0	+
#Deleted in new
chr16	83710178	83710546	ENSG00000261103.1|AC009063.3|lncRNA|chr16:83710178:83710546:-	0	-
#Deleted in new
chr16	83716986	83717092	ENSG00000261103.1|AC009063.3|lncRNA|chr16:83716986:83717092:-	0	-
#Deleted in new
chr16	83717806	83717898	ENSG00000261103.1|AC009063.3|lncRNA|chr16:83717806:83717898:-	0	-
#Deleted in new
chr16	83721118	83721650	ENSG00000260788.5|AC009063.2|lncRNA|chr16:83721118:83721650:-	0	-
#Deleted in new
chr16	83721609	83721832	ENSG00000260788.5|AC009063.2|lncRNA|chr16:83721609:83721832:-	0	-
#Deleted in new
chr16	83728867	83728999	ENSG00000260788.5|AC009063.2|lncRNA|chr16:83728867:83728999:-	0	-
#Deleted in new
chr16	83739917	83740021	ENSG00000260788.5|AC009063.2|lncRNA|chr16:83739917:83740021:-	0	-
#Deleted in new
chr16	83772808	83772883	ENSG00000260788.5|AC009063.2|lncRNA|chr16:83772808:83772883:-	0	-
#Deleted in new
chr16	83772808	83772917	ENSG00000260788.5|AC009063.2|lncRNA|chr16:83772808:83772917:-	0	-
#Deleted in new
chr16	83772808	83772936	ENSG00000260788.5|AC009063.2|lncRNA|chr16:83772808:83772936:-	0	-
#Deleted in new
chr16	83797235	83797376	ENSG00000260228.5|AC009119.1|lncRNA|chr16:83797235:83797376:-	0	-
#Deleted in new
chr16	83803434	83803528	ENSG00000260228.5|AC009119.1|lncRNA|chr16:83803434:83803528:-	0	-
#Deleted in new
chr16	83803456	83803528	ENSG00000260228.5|AC009119.1|lncRNA|chr16:83803456:83803528:-	0	-
#Deleted in new
chr16	83803668	83803976	ENSG00000260228.5|AC009119.1|lncRNA|chr16:83803668:83803976:-	0	-
#Deleted in new
chr16	83805622	83806127	ENSG00000260228.5|AC009119.1|lncRNA|chr16:83805622:83806127:-	0	-
#Deleted in new
chr16	83805752	83805999	ENSG00000260228.5|AC009119.1|lncRNA|chr16:83805752:83805999:-	0	-
#Partially deleted in new
chr16	83811420	83819737	ENSG00000230989.6|HSBP1|pc|chr16:83811420:83819737:+	0	+
#Deleted in new
chr16	83817785	83818484	ENSG00000230989.6|HSBP1|pc|chr16:83817785:83818484:+	0	+
#Split in new
chr16	83914955	83927026	ENSG00000103150.5|MLYCD|pc|chr16:83914955:83927026:+	0	+
#Deleted in new
chr16	83929795	83930103	ENSG00000260932.1|AC009119.3|lncRNA|chr16:83929795:83930103:-	0	-
#Deleted in new
chr16	83930678	83930740	ENSG00000260932.1|AC009119.3|lncRNA|chr16:83930678:83930740:-	0	-
#Deleted in new
chr16	83931030	83931110	ENSG00000260932.1|AC009119.3|lncRNA|chr16:83931030:83931110:-	0	-
#Deleted in new
chr16	83931089	83931223	ENSG00000260932.1|AC009119.3|lncRNA|chr16:83931089:83931223:-	0	-
#Deleted in new
chr16	83931310	83931418	ENSG00000260300.5|AC009119.2|pc|chr16:83931310:83931418:+	0	+
#Deleted in new
chr16	83931345	83931418	ENSG00000260300.5|AC009119.2|pc|chr16:83931345:83931418:+	0	+
#Deleted in new
chr16	83932244	83934180	ENSG00000260300.5|AC009119.2|pc|chr16:83932244:83934180:+	0	+
#Deleted in new
chr16	83948210	83948332	ENSG00000260300.5|AC009119.2|pc|chr16:83948210:83948332:+	0	+
#Deleted in new
chr16	83948281	83948332	ENSG00000140961.12|OSGIN1|pc|chr16:83948281:83948332:+	0	+
#Partially deleted in new
chr16	83948813	83948901	ENSG00000140961.12|OSGIN1|pc|chr16:83948813:83948901:+	0	+
#Partially deleted in new
chr16	83948813	83948901	ENSG00000260300.5|AC009119.2|pc|chr16:83948813:83948901:+	0	+
#Deleted in new
chr16	83951127	83951152	ENSG00000260300.5|AC009119.2|pc|chr16:83951127:83951152:+	0	+
#Deleted in new
chr16	83951127	83951155	ENSG00000260300.5|AC009119.2|pc|chr16:83951127:83951155:+	0	+
#Deleted in new
chr16	83951127	83951287	ENSG00000140961.12|OSGIN1|pc|chr16:83951127:83951287:+	0	+
#Deleted in new
chr16	83951127	83951445	ENSG00000260300.5|AC009119.2|pc|chr16:83951127:83951445:+	0	+
#Deleted in new
chr16	84041066	84041356	ENSG00000166558.10|SLC38A8|pc|chr16:84041066:84041356:-	0	-
#Deleted in new
chr16	84075522	84075656	ENSG00000140943.16|MBTPS1|pc|chr16:84075522:84075656:-	0	-
#Deleted in new
chr16	84117050	84117571	ENSG00000260018.1|AC040169.1|lncRNA|chr16:84117050:84117571:+	0	+
#Deleted in new
chr16	84139222	84139306	ENSG00000103160.11|HSDL1|pc|chr16:84139222:84139306:-	0	-
#Deleted in new
chr16	84158841	84159211	ENSG00000154099.17|DNAAF1|pc|chr16:84158841:84159211:+	0	+
#Deleted in new
chr16	84159081	84159211	ENSG00000154099.17|DNAAF1|pc|chr16:84159081:84159211:+	0	+
#Deleted in new
chr16	84159148	84159211	ENSG00000154099.17|DNAAF1|pc|chr16:84159148:84159211:+	0	+
#Deleted in new
chr16	84162189	84162215	ENSG00000154099.17|DNAAF1|pc|chr16:84162189:84162215:+	0	+
#Deleted in new
chr16	84170241	84170356	ENSG00000154099.17|DNAAF1|pc|chr16:84170241:84170356:+	0	+
#Partially deleted in new
chr16	84172259	84174728	ENSG00000154099.17|DNAAF1|pc|chr16:84172259:84174728:+	0	+
#Partially deleted in new
chr16	84175227	84177916	ENSG00000154099.17|DNAAF1|pc|chr16:84175227:84177916:+	0	+
#Deleted in new
chr16	84177513	84177606	ENSG00000154099.17|DNAAF1|pc|chr16:84177513:84177606:+	0	+
#Deleted in new
chr16	84177728	84177917	ENSG00000154099.17|DNAAF1|pc|chr16:84177728:84177917:+	0	+
#Deleted in new
chr16	84177728	84177918	ENSG00000154099.17|DNAAF1|pc|chr16:84177728:84177918:+	0	+
#Partially deleted in new
chr16	84178389	84178767	ENSG00000154099.17|DNAAF1|pc|chr16:84178389:84178767:+	0	+
#Deleted in new
chr16	84185157	84185583	ENSG00000103168.16|TAF1C|pc|chr16:84185157:84185583:-	0	-
#Deleted in new
chr16	84185479	84185583	ENSG00000103168.16|TAF1C|pc|chr16:84185479:84185583:-	0	-
#Deleted in new
chr16	84186900	84186981	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84186981:-	0	-
#Deleted in new
chr16	84186900	84186989	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84186989:-	0	-
#Deleted in new
chr16	84186900	84187011	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84187011:-	0	-
#Deleted in new
chr16	84186900	84187020	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84187020:-	0	-
#Deleted in new
chr16	84186900	84187033	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84187033:-	0	-
#Deleted in new
chr16	84186900	84187038	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84187038:-	0	-
#Deleted in new
chr16	84186900	84187039	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84187039:-	0	-
#Deleted in new
chr16	84186900	84187045	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84187045:-	0	-
#Deleted in new
chr16	84186900	84187049	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84187049:-	0	-
#Deleted in new
chr16	84186900	84187052	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84187052:-	0	-
#Deleted in new
chr16	84186900	84187057	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84187057:-	0	-
#Deleted in new
chr16	84186900	84187063	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84187063:-	0	-
#Deleted in new
chr16	84186900	84187070	ENSG00000103168.16|TAF1C|pc|chr16:84186900:84187070:-	0	-
#Deleted in new
chr16	84191761	84191874	ENSG00000140955.10|ADAD2|pc|chr16:84191761:84191874:+	0	+
#Partially deleted in new
chr16	84192557	84194306	ENSG00000250685.7|AC009123.1|lncRNA|chr16:84192557:84194306:-	0	-
#Partially deleted in new
chr16	84192975	84194221	ENSG00000140955.10|ADAD2|pc|chr16:84192975:84194221:+	0	+
#Deleted in new
chr16	84255269	84255281	ENSG00000260858.1|AC010551.3|lncRNA|chr16:84255269:84255281:-	0	-
#Deleted in new
chr16	84258065	84258115	ENSG00000260858.1|AC010551.3|lncRNA|chr16:84258065:84258115:-	0	-
#Deleted in new
chr16	84260648	84261049	ENSG00000260858.1|AC010551.3|lncRNA|chr16:84260648:84261049:-	0	-
#Deleted in new
chr16	84270	84595	ENSG00000103148.15|NPRL3|pc|chr16:84270:84595:-	0	-
#Deleted in new
chr16	84273	84595	ENSG00000103148.15|NPRL3|pc|chr16:84273:84595:-	0	-
#Deleted in new
chr16	84296896	84296985	ENSG00000260530.1|AC010551.2|lncRNA|chr16:84296896:84296985:-	0	-
#Deleted in new
chr16	84342463	84342595	ENSG00000260504.1|AC010551.1|lncRNA|chr16:84342463:84342595:-	0	-
#Deleted in new
chr16	84343070	84343407	ENSG00000260504.1|AC010551.1|lncRNA|chr16:84343070:84343407:-	0	-
#Deleted in new
chr16	84407186	84407464	ENSG00000064270.12|ATP2C2|pc|chr16:84407186:84407464:+	0	+
#Deleted in new
chr16	84467303	84467361	ENSG00000261286.1|ATP2C2-AS1|lncRNA|chr16:84467303:84467361:-	0	-
#Deleted in new
chr16	84494726	84494832	ENSG00000140950.15|TLDC1|pc|chr16:84494726:84494832:-	0	-
#Deleted in new
chr16	84497076	84497495	ENSG00000261243.1|AC022165.1|lncRNA|chr16:84497076:84497495:+	0	+
#Deleted in new
chr16	84497418	84497647	ENSG00000140950.15|TLDC1|pc|chr16:84497418:84497647:-	0	-
#Deleted in new
chr16	84499915	84500035	ENSG00000140950.15|TLDC1|pc|chr16:84499915:84500035:-	0	-
#Deleted in new
chr16	84502720	84502862	ENSG00000140950.15|TLDC1|pc|chr16:84502720:84502862:-	0	-
#Deleted in new
chr16	84503957	84504147	ENSG00000140950.15|TLDC1|pc|chr16:84503957:84504147:-	0	-
#Deleted in new
chr16	84504600	84504621	ENSG00000140950.15|TLDC1|pc|chr16:84504600:84504621:-	0	-
#Deleted in new
chr16	84504600	84504629	ENSG00000140950.15|TLDC1|pc|chr16:84504600:84504629:-	0	-
#Deleted in new
chr16	84504600	84504647	ENSG00000140950.15|TLDC1|pc|chr16:84504600:84504647:-	0	-
#Deleted in new
chr16	84504600	84504656	ENSG00000140950.15|TLDC1|pc|chr16:84504600:84504656:-	0	-
#Deleted in new
chr16	84504600	84504659	ENSG00000140950.15|TLDC1|pc|chr16:84504600:84504659:-	0	-
#Partially deleted in new
chr16	84504600	84504690	ENSG00000140950.15|TLDC1|pc|chr16:84504600:84504690:-	0	-
#Deleted in new
chr16	84553945	84554033	ENSG00000140950.15|TLDC1|pc|chr16:84553945:84554033:-	0	-
#Partially deleted in new
chr16	84616003	84616475	ENSG00000103187.7|COTL1|pc|chr16:84616003:84616475:-	0	-
#Deleted in new
chr16	84648921	84649066	ENSG00000135686.12|KLHL36|pc|chr16:84648921:84649066:+	0	+
#Deleted in new
chr16	84708871	84709322	ENSG00000103194.15|USP10|pc|chr16:84708871:84709322:+	0	+
#Deleted in new
chr16	84716194	84716258	ENSG00000103194.15|USP10|pc|chr16:84716194:84716258:+	0	+
#Deleted in new
chr16	84716194	84716518	ENSG00000103194.15|USP10|pc|chr16:84716194:84716518:+	0	+
#Partially deleted in new
chr16	84829010	84829242	ENSG00000260859.1|AC025280.1|lncRNA|chr16:84829010:84829242:+	0	+
#Deleted in new
chr16	84842002	84842265	ENSG00000103196.11|CRISPLD2|pc|chr16:84842002:84842265:+	0	+
#Deleted in new
chr16	848524	849065	ENSG00000275438.1|AL031008.1|lncRNA|chr16:848524:849065:-	0	-
#Partially deleted in new
chr16	84872991	84873508	ENSG00000103196.11|CRISPLD2|pc|chr16:84872991:84873508:+	0	+
#Deleted in new
chr16	84917376	84919923	ENSG00000279622.1|AC025280.2|lncRNA|chr16:84917376:84919923:-	0	-
#Deleted in new
chr16	84919639	84919737	ENSG00000103196.11|CRISPLD2|pc|chr16:84919639:84919737:+	0	+
#Deleted in new
chr16	84928352	84928605	ENSG00000260340.1|LINC02176|lncRNA|chr16:84928352:84928605:+	0	+
#Deleted in new
chr16	84939380	84939603	ENSG00000260340.1|LINC02176|lncRNA|chr16:84939380:84939603:+	0	+
#Deleted in new
chr16	84988762	84988873	ENSG00000153786.12|ZDHHC7|pc|chr16:84988762:84988873:-	0	-
#Deleted in new
chr16	85004916	85005010	ENSG00000153786.12|ZDHHC7|pc|chr16:85004916:85005010:-	0	-
#Deleted in new
chr16	85063211	85063670	ENSG00000135709.12|KIAA0513|pc|chr16:85063211:85063670:+	0	+
#Partially deleted in new
chr16	85088275	85094220	ENSG00000135709.12|KIAA0513|pc|chr16:85088275:85094220:+	0	+
#Partially deleted in new
chr16	85088275	85094230	ENSG00000135709.12|KIAA0513|pc|chr16:85088275:85094230:+	0	+
#Deleted in new
chr16	85099126	85099346	ENSG00000153789.12|FAM92B|pc|chr16:85099126:85099346:-	0	-
#Partially deleted in new
chr16	85147622	85149443	ENSG00000278214.1|LINC02139|lncRNA|chr16:85147622:85149443:+	0	+
#Deleted in new
chr16	85185118	85185363	ENSG00000131149.18|GSE1|pc|chr16:85185118:85185363:+	0	+
#Partially deleted in new
chr16	8526548	8526678	ENSG00000261066.1|AC074052.2|lncRNA|chr16:8526548:8526678:-	0	-
#Deleted in new
chr16	85282957	85283557	ENSG00000179219.5|LINC00311|lncRNA|chr16:85282957:85283557:+	0	+
#Deleted in new
chr1	68529324	68529479	ENSG00000234264.1|DEPDC1-AS1|lncRNA|chr1:68529324:68529479:+	0	+
#Deleted in new
chr1	6853047	6853189	ENSG00000171735.18|CAMTA1|pc|chr1:6853047:6853189:+	0	+
#Deleted in new
chr1	6853051	6853189	ENSG00000171735.18|CAMTA1|pc|chr1:6853051:6853189:+	0	+
#Deleted in new
chr1	6853094	6853189	ENSG00000171735.18|CAMTA1|pc|chr1:6853094:6853189:+	0	+
#Deleted in new
chr16	85359341	85359449	ENSG00000131149.18|GSE1|pc|chr16:85359341:85359449:+	0	+
#Partially deleted in new
chr16	853633	854706	ENSG00000103227.18|LMF1|pc|chr16:853633:854706:-	0	-
#Partially deleted in new
chr16	853637	854706	ENSG00000103227.18|LMF1|pc|chr16:853637:854706:-	0	-
#Partially deleted in new
chr16	853642	854706	ENSG00000103227.18|LMF1|pc|chr16:853642:854706:-	0	-
#Deleted in new
chr1	68537631	68538627	ENSG00000234264.1|DEPDC1-AS1|lncRNA|chr1:68537631:68538627:+	0	+
#Partially deleted in new
chr16	854500	855948	ENSG00000103227.18|LMF1|pc|chr16:854500:855948:-	0	-
#Deleted in new
chr16	855106	856055	ENSG00000103227.18|LMF1|pc|chr16:855106:856055:-	0	-
#Partially deleted in new
chr16	85670627	85671098	ENSG00000131149.18|GSE1|pc|chr16:85670627:85671098:+	0	+
#Deleted in new
chr16	85671830	85672141	ENSG00000131149.18|GSE1|pc|chr16:85671830:85672141:+	0	+
#Deleted in new
chr16	85672181	85672309	ENSG00000131149.18|GSE1|pc|chr16:85672181:85672309:+	0	+
#Partially deleted in new
chr16	85676197	85678337	ENSG00000131153.8|GINS2|pc|chr16:85676197:85678337:-	0	-
#Deleted in new
chr16	85687712	85688025	ENSG00000131153.8|GINS2|pc|chr16:85687712:85688025:-	0	-
#Deleted in new
chr16	85689795	85690073	ENSG00000131153.8|GINS2|pc|chr16:85689795:85690073:-	0	-
#Partially deleted in new
chr16	85697334	85697868	ENSG00000275393.1|AC018695.6|lncRNA|chr16:85697334:85697868:-	0	-
#Deleted in new
chr16	85743286	85743681	ENSG00000269898.1|AC018695.2|lncRNA|chr16:85743286:85743681:+	0	+
#Deleted in new
chr16	85744122	85744225	ENSG00000269898.1|AC018695.2|lncRNA|chr16:85744122:85744225:+	0	+
#Deleted in new
chr16	85771757	85771891	ENSG00000131148.8|EMC8|pc|chr16:85771757:85771891:-	0	-
#Deleted in new
chr16	85776554	85776606	ENSG00000131148.8|EMC8|pc|chr16:85776554:85776606:-	0	-
#Deleted in new
chr16	85784381	85785048	ENSG00000270184.1|AC018695.4|lncRNA|chr16:85784381:85785048:+	0	+
#Deleted in new
chr16	85787595	85787617	ENSG00000270184.1|AC018695.4|lncRNA|chr16:85787595:85787617:+	0	+
#Partially deleted in new
chr16	85798632	85799068	ENSG00000131143.8|COX4I1|pc|chr16:85798632:85799068:+	0	+
#Deleted in new
chr16	85804539	85804661	ENSG00000131143.8|COX4I1|pc|chr16:85804539:85804661:+	0	+
#Partially deleted in new
chr16	85859520	85862012	ENSG00000279907.1|AC018695.7|lncRNA|chr16:85859520:85862012:+	0	+
#Partially deleted in new
chr16	85921105	85922296	ENSG00000140968.10|IRF8|pc|chr16:85921105:85922296:+	0	+
#Partially deleted in new
chr16	85921105	85922609	ENSG00000140968.10|IRF8|pc|chr16:85921105:85922609:+	0	+
#Partially deleted in new
chr16	85935280	85935915	ENSG00000268804.1|LINC02132|lncRNA|chr16:85935280:85935915:-	0	-
#Deleted in new
chr16	85981749	85981871	ENSG00000269667.1|AC092723.1|lncRNA|chr16:85981749:85981871:+	0	+
#Deleted in new
chr16	86035626	86036419	ENSG00000279604.1|AC092723.2|lncRNA|chr16:86035626:86036419:+	0	+
#Deleted in new
chr16	86089361	86089526	ENSG00000261177.1|AC135012.1|lncRNA|chr16:86089361:86089526:-	0	-
#Deleted in new
chr16	86158611	86158798	ENSG00000268078.1|AC135012.2|lncRNA|chr16:86158611:86158798:-	0	-
#Deleted in new
chr16	86221422	86221773	ENSG00000270058.1|AC040170.1|lncRNA|chr16:86221422:86221773:-	0	-
#Deleted in new
chr16	86225579	86225667	ENSG00000268754.1|LINC01081|lncRNA|chr16:86225579:86225667:-	0	-
#Deleted in new
chr16	86225846	86225962	ENSG00000268754.1|LINC01081|lncRNA|chr16:86225846:86225962:-	0	-
#Deleted in new
chr16	86226639	86226777	ENSG00000268754.1|LINC01081|lncRNA|chr16:86226639:86226777:-	0	-
#Deleted in new
chr16	8625495	8625575	ENSG00000067365.14|METTL22|pc|chr16:8625495:8625575:+	0	+
#Partially deleted in new
chr16	8625495	8625713	ENSG00000067365.14|METTL22|pc|chr16:8625495:8625713:+	0	+
#Deleted in new
chr16	86269003	86269083	ENSG00000268754.1|LINC01081|lncRNA|chr16:86269003:86269083:-	0	-
#Deleted in new
chr16	86275702	86275745	ENSG00000268754.1|LINC01081|lncRNA|chr16:86275702:86275745:-	0	-
#Deleted in new
chr16	86286426	86286549	ENSG00000268532.1|LINC02135|lncRNA|chr16:86286426:86286549:+	0	+
#Deleted in new
chr16	86290664	86290744	ENSG00000268532.1|LINC02135|lncRNA|chr16:86290664:86290744:+	0	+
#Partially deleted in new
chr16	86291527	86293389	ENSG00000268532.1|LINC02135|lncRNA|chr16:86291527:86293389:+	0	+
#Deleted in new
chr16	8631246	8632138	ENSG00000067365.14|METTL22|pc|chr16:8631246:8632138:+	0	+
#Deleted in new
chr16	86331843	86332678	ENSG00000168367.9|LINC00917|lncRNA|chr16:86331843:86332678:-	0	-
#Deleted in new
chr16	86331849	86332678	ENSG00000168367.9|LINC00917|lncRNA|chr16:86331849:86332678:-	0	-
#Deleted in new
chr16	86332958	86333044	ENSG00000168367.9|LINC00917|lncRNA|chr16:86332958:86333044:-	0	-
#Deleted in new
chr16	86333687	86333907	ENSG00000168367.9|LINC00917|lncRNA|chr16:86333687:86333907:-	0	-
#Deleted in new
chr16	86335677	86335872	ENSG00000168367.9|LINC00917|lncRNA|chr16:86335677:86335872:-	0	-
#Deleted in new
chr16	86337360	86337556	ENSG00000168367.9|LINC00917|lncRNA|chr16:86337360:86337556:-	0	-
#Deleted in new
chr16	86337360	86337592	ENSG00000168367.9|LINC00917|lncRNA|chr16:86337360:86337592:-	0	-
#Deleted in new
chr16	86347386	86347449	ENSG00000269826.1|AC092327.2|lncRNA|chr16:86347386:86347449:+	0	+
#Deleted in new
chr16	86347892	86348499	ENSG00000269826.1|AC092327.2|lncRNA|chr16:86347892:86348499:+	0	+
#Deleted in new
chr16	86349380	86349611	ENSG00000269826.1|AC092327.2|lncRNA|chr16:86349380:86349611:+	0	+
#Deleted in new
chr16	86349550	86349639	ENSG00000168367.9|LINC00917|lncRNA|chr16:86349550:86349639:-	0	-
#Deleted in new
chr16	86349550	86349680	ENSG00000168367.9|LINC00917|lncRNA|chr16:86349550:86349680:-	0	-
#Deleted in new
chr16	86349550	86349683	ENSG00000168367.9|LINC00917|lncRNA|chr16:86349550:86349683:-	0	-
#Deleted in new
chr16	86349574	86349683	ENSG00000168367.9|LINC00917|lncRNA|chr16:86349574:86349683:-	0	-
#Partially deleted in new
chr16	8639233	8639676	ENSG00000067365.14|METTL22|pc|chr16:8639233:8639676:+	0	+
#Partially deleted in new
chr16	8646107	8649654	ENSG00000067365.14|METTL22|pc|chr16:8646107:8649654:+	0	+
#Deleted in new
chr16	86477885	86478051	ENSG00000268388.5|FENDRR|lncRNA|chr16:86477885:86478051:-	0	-
#Deleted in new
chr16	86478704	86478756	ENSG00000268388.5|FENDRR|lncRNA|chr16:86478704:86478756:-	0	-
#Partially deleted in new
chr16	86487705	86490513	ENSG00000268388.5|FENDRR|lncRNA|chr16:86487705:86490513:-	0	-
#Partially deleted in new
chr16	86487736	86489732	ENSG00000268388.5|FENDRR|lncRNA|chr16:86487736:86489732:-	0	-
#Deleted in new
chr16	86490182	86490513	ENSG00000268388.5|FENDRR|lncRNA|chr16:86490182:86490513:-	0	-
#Deleted in new
chr16	86490225	86490513	ENSG00000268388.5|FENDRR|lncRNA|chr16:86490225:86490513:-	0	-
#Deleted in new
chr16	86490263	86490513	ENSG00000268388.5|FENDRR|lncRNA|chr16:86490263:86490513:-	0	-
#Deleted in new
chr16	86490267	86491004	ENSG00000268388.5|FENDRR|lncRNA|chr16:86490267:86491004:-	0	-
#Deleted in new
chr16	86490852	86490879	ENSG00000268388.5|FENDRR|lncRNA|chr16:86490852:86490879:-	0	-
#Deleted in new
chr16	86490852	86490881	ENSG00000268388.5|FENDRR|lncRNA|chr16:86490852:86490881:-	0	-
#Deleted in new
chr16	86490852	86491004	ENSG00000268388.5|FENDRR|lncRNA|chr16:86490852:86491004:-	0	-
#Partially deleted in new
chr16	86520382	86523897	ENSG00000270020.1|AC009108.3|lncRNA|chr16:86520382:86523897:-	0	-
#Partially deleted in new
chr16	86530175	86532481	ENSG00000103248.18|MTHFSD|pc|chr16:86530175:86532481:-	0	-
#Partially deleted in new
chr16	86530177	86533800	ENSG00000103248.18|MTHFSD|pc|chr16:86530177:86533800:-	0	-
#Partially deleted in new
chr16	86530832	86532481	ENSG00000103248.18|MTHFSD|pc|chr16:86530832:86532481:-	0	-
#Deleted in new
chr16	86540719	86541198	ENSG00000103248.18|MTHFSD|pc|chr16:86540719:86541198:-	0	-
#Partially deleted in new
chr16	86542100	86542545	ENSG00000103248.18|MTHFSD|pc|chr16:86542100:86542545:-	0	-
#Deleted in new
chr16	86547145	86547568	ENSG00000103248.18|MTHFSD|pc|chr16:86547145:86547568:-	0	-
#Deleted in new
chr16	86548034	86548111	ENSG00000103248.18|MTHFSD|pc|chr16:86548034:86548111:-	0	-
#Deleted in new
chr16	86548066	86548111	ENSG00000103248.18|MTHFSD|pc|chr16:86548066:86548111:-	0	-
#Deleted in new
chr16	86553259	86553721	ENSG00000103248.18|MTHFSD|pc|chr16:86553259:86553721:-	0	-
#Deleted in new
chr16	86555041	86555154	ENSG00000103248.18|MTHFSD|pc|chr16:86555041:86555154:-	0	-
#Deleted in new
chr16	86555041	86555169	ENSG00000103248.18|MTHFSD|pc|chr16:86555041:86555169:-	0	-
#Deleted in new
chr16	86555168	86555178	ENSG00000103248.18|MTHFSD|pc|chr16:86555168:86555178:-	0	-
#Deleted in new
chr16	86555168	86555203	ENSG00000103248.18|MTHFSD|pc|chr16:86555168:86555203:-	0	-
#Deleted in new
chr16	86555168	86555210	ENSG00000103248.18|MTHFSD|pc|chr16:86555168:86555210:-	0	-
#Deleted in new
chr16	86555168	86555235	ENSG00000103248.18|MTHFSD|pc|chr16:86555168:86555235:-	0	-
#Deleted in new
chr16	86555172	86555235	ENSG00000103248.18|MTHFSD|pc|chr16:86555172:86555235:-	0	-
#Deleted in new
chr16	86555319	86557299	ENSG00000280278.1|FLJ30679|lncRNA|chr16:86555319:86557299:+	0	+
#Deleted in new
chr16	86646300	86646363	ENSG00000261161.1|AC009154.1|lncRNA|chr16:86646300:86646363:+	0	+
#Deleted in new
chr16	86647092	86647356	ENSG00000261161.1|AC009154.1|lncRNA|chr16:86647092:86647356:+	0	+
#Partially deleted in new
chr16	8666761	8667271	ENSG00000279357.1|AC007224.2|lncRNA|chr16:8666761:8667271:+	0	+
#Deleted in new
chr16	86668742	86668923	ENSG00000261161.1|AC009154.1|lncRNA|chr16:86668742:86668923:+	0	+
#Deleted in new
chr16	86698117	86698841	ENSG00000274478.1|AC009154.2|lncRNA|chr16:86698117:86698841:+	0	+
#Deleted in new
chr16	86720687	86721003	ENSG00000260026.1|LINC02189|lncRNA|chr16:86720687:86721003:-	0	-
#Deleted in new
chr16	86721764	86721954	ENSG00000260026.1|LINC02189|lncRNA|chr16:86721764:86721954:-	0	-
#Deleted in new
chr16	86722090	86722131	ENSG00000261175.5|LINC02188|lncRNA|chr16:86722090:86722131:+	0	+
#Deleted in new
chr16	86722091	86722147	ENSG00000261175.5|LINC02188|lncRNA|chr16:86722091:86722147:+	0	+
#Deleted in new
chr16	86727867	86727967	ENSG00000261175.5|LINC02188|lncRNA|chr16:86727867:86727967:+	0	+
#Deleted in new
chr16	86734825	86734909	ENSG00000261175.5|LINC02188|lncRNA|chr16:86734825:86734909:+	0	+
#Deleted in new
chr16	86737409	86737719	ENSG00000261175.5|LINC02188|lncRNA|chr16:86737409:86737719:+	0	+
#Partially deleted in new
chr16	86737409	86741059	ENSG00000261175.5|LINC02188|lncRNA|chr16:86737409:86741059:+	0	+
#Partially deleted in new
chr16	869179	869549	ENSG00000103227.18|LMF1|pc|chr16:869179:869549:-	0	-
#Deleted in new
chr16	87069357	87069752	ENSG00000261363.2|AC106745.1|lncRNA|chr16:87069357:87069752:+	0	+
#Deleted in new
chr16	87083561	87083906	ENSG00000260456.6|C16orf95|pc|chr16:87083561:87083906:-	0	-
#Partially deleted in new
chr16	871160	873860	ENSG00000103227.18|LMF1|pc|chr16:871160:873860:-	0	-
#Deleted in new
chr16	87138423	87138555	ENSG00000260456.6|C16orf95|pc|chr16:87138423:87138555:-	0	-
#Deleted in new
chr16	87139210	87139354	ENSG00000260456.6|C16orf95|pc|chr16:87139210:87139354:-	0	-
#Deleted in new
chr16	87212885	87213165	ENSG00000261095.1|AC136285.1|lncRNA|chr16:87212885:87213165:+	0	+
#Partially deleted in new
chr16	87225354	87226430	ENSG00000261095.1|AC136285.1|lncRNA|chr16:87225354:87226430:+	0	+
#Deleted in new
chr16	8722766	8722842	ENSG00000183044.11|ABAT|pc|chr16:8722766:8722842:+	0	+
#Deleted in new
chr16	87262758	87262900	ENSG00000261697.5|AC010531.4|lncRNA|chr16:87262758:87262900:-	0	-
#Deleted in new
chr16	87273147	87273384	ENSG00000261697.5|AC010531.4|lncRNA|chr16:87273147:87273384:-	0	-
#Deleted in new
chr16	87290718	87290797	ENSG00000261697.5|AC010531.4|lncRNA|chr16:87290718:87290797:-	0	-
#Deleted in new
chr16	87290725	87290797	ENSG00000261697.5|AC010531.4|lncRNA|chr16:87290725:87290797:-	0	-
#Deleted in new
chr16	87291683	87291737	ENSG00000261697.5|AC010531.4|lncRNA|chr16:87291683:87291737:-	0	-
#Deleted in new
chr16	87291683	87292038	ENSG00000261697.5|AC010531.4|lncRNA|chr16:87291683:87292038:-	0	-
#Deleted in new
chr16	87291683	87292438	ENSG00000261697.5|AC010531.4|lncRNA|chr16:87291683:87292438:-	0	-
#Deleted in new
chr16	87292367	87292409	ENSG00000261697.5|AC010531.4|lncRNA|chr16:87292367:87292409:-	0	-
#Deleted in new
chr16	87292367	87292438	ENSG00000261697.5|AC010531.4|lncRNA|chr16:87292367:87292438:-	0	-
#Deleted in new
chr16	87293010	87293087	ENSG00000260456.6|C16orf95|pc|chr16:87293010:87293087:-	0	-
#Deleted in new
chr16	87296948	87297633	ENSG00000280419.1|AC010531.8|lncRNA|chr16:87296948:87297633:+	0	+
#Deleted in new
chr16	87298787	87298909	ENSG00000260456.6|C16orf95|pc|chr16:87298787:87298909:-	0	-
#Partially deleted in new
chr16	87302652	87302762	ENSG00000260456.6|C16orf95|pc|chr16:87302652:87302762:-	0	-
#Partially deleted in new
chr16	87302652	87302769	ENSG00000260456.6|C16orf95|pc|chr16:87302652:87302769:-	0	-
#Deleted in new
chr16	87306049	87306125	ENSG00000260456.6|C16orf95|pc|chr16:87306049:87306125:-	0	-
#Partially deleted in new
chr16	87317086	87317420	ENSG00000260456.6|C16orf95|pc|chr16:87317086:87317420:-	0	-
#Deleted in new
chr16	87317090	87317380	ENSG00000260456.6|C16orf95|pc|chr16:87317090:87317380:-	0	-
#Partially deleted in new
chr16	87317090	87317416	ENSG00000260456.6|C16orf95|pc|chr16:87317090:87317416:-	0	-
#Deleted in new
chr16	87317856	87318043	ENSG00000270006.2|AC010531.6|lncRNA|chr16:87317856:87318043:+	0	+
#Partially deleted in new
chr16	87326986	87327426	ENSG00000270082.1|AC010531.7|lncRNA|chr16:87326986:87327426:+	0	+
#Partially deleted in new
chr16	87326986	87331510	ENSG00000103264.17|FBXO31|pc|chr16:87326986:87331510:-	0	-
#Deleted in new
chr16	87327559	87327584	ENSG00000270082.1|AC010531.7|lncRNA|chr16:87327559:87327584:+	0	+
#Partially deleted in new
chr16	8735698	8737473	ENSG00000183044.11|ABAT|pc|chr16:8735698:8737473:+	0	+
#Deleted in new
chr16	87362535	87362605	ENSG00000269901.1|AC010531.5|lncRNA|chr16:87362535:87362605:+	0	+
#Deleted in new
chr16	8738442	8738454	ENSG00000183044.11|ABAT|pc|chr16:8738442:8738454:+	0	+
#Deleted in new
chr16	87386010	87386206	ENSG00000103264.17|FBXO31|pc|chr16:87386010:87386206:-	0	-
#Deleted in new
chr16	87388688	87388758	ENSG00000103264.17|FBXO31|pc|chr16:87388688:87388758:-	0	-
#Partially deleted in new
chr16	87389550	87389713	ENSG00000140941.12|MAP1LC3B|pc|chr16:87389550:87389713:+	0	+
#Deleted in new
chr16	87389736	87389848	ENSG00000103264.17|FBXO31|pc|chr16:87389736:87389848:-	0	-
#Deleted in new
chr16	87389736	87389850	ENSG00000103264.17|FBXO31|pc|chr16:87389736:87389850:-	0	-
#Deleted in new
chr16	87389760	87389831	ENSG00000140941.12|MAP1LC3B|pc|chr16:87389760:87389831:+	0	+
#Deleted in new
chr16	87389761	87389872	ENSG00000140941.12|MAP1LC3B|pc|chr16:87389761:87389872:+	0	+
#Deleted in new
chr16	87389769	87389915	ENSG00000140941.12|MAP1LC3B|pc|chr16:87389769:87389915:+	0	+
#Deleted in new
chr16	87391597	87391738	ENSG00000140941.12|MAP1LC3B|pc|chr16:87391597:87391738:+	0	+
#Deleted in new
chr16	87391597	87391740	ENSG00000140941.12|MAP1LC3B|pc|chr16:87391597:87391740:+	0	+
#Deleted in new
chr16	87391597	87391853	ENSG00000140941.12|MAP1LC3B|pc|chr16:87391597:87391853:+	0	+
#Deleted in new
chr16	87392082	87392107	ENSG00000103264.17|FBXO31|pc|chr16:87392082:87392107:-	0	-
#Partially deleted in new
chr16	87392082	87392142	ENSG00000103264.17|FBXO31|pc|chr16:87392082:87392142:-	0	-
#Deleted in new
chr16	87396703	87396941	ENSG00000261592.1|AC010531.3|lncRNA|chr16:87396703:87396941:-	0	-
#Partially deleted in new
chr16	87398814	87399504	ENSG00000140941.12|MAP1LC3B|pc|chr16:87398814:87399504:+	0	+
#Deleted in new
chr16	87399597	87399686	ENSG00000140941.12|MAP1LC3B|pc|chr16:87399597:87399686:+	0	+
#Deleted in new
chr16	87400020	87400295	ENSG00000261592.1|AC010531.3|lncRNA|chr16:87400020:87400295:-	0	-
#Partially deleted in new
chr16	87470369	87474370	ENSG00000276337.1|AC105429.1|lncRNA|chr16:87470369:87474370:-	0	-
#Partially deleted in new
chr16	87494097	87494235	ENSG00000260750.5|AC092720.1|lncRNA|chr16:87494097:87494235:+	0	+
#Deleted in new
chr16	87494186	87494235	ENSG00000260750.5|AC092720.1|lncRNA|chr16:87494186:87494235:+	0	+
#Deleted in new
chr16	87496989	87496998	ENSG00000260750.5|AC092720.1|lncRNA|chr16:87496989:87496998:+	0	+
#Deleted in new
chr16	87496989	87497166	ENSG00000260750.5|AC092720.1|lncRNA|chr16:87496989:87497166:+	0	+
#Deleted in new
chr16	87506181	87506386	ENSG00000260750.5|AC092720.1|lncRNA|chr16:87506181:87506386:+	0	+
#Deleted in new
chr16	8757194	8757310	ENSG00000183044.11|ABAT|pc|chr16:8757194:8757310:+	0	+
#Deleted in new
chr16	87653561	87655015	ENSG00000154118.12|JPH3|pc|chr16:87653561:87655015:+	0	+
#Deleted in new
chr16	87693536	87696147	ENSG00000226180.3|AC010536.1|lncRNA|chr16:87693536:87696147:-	0	-
#Partially deleted in new
chr16	87698147	87702591	ENSG00000104731.13|KLHDC4|pc|chr16:87698147:87702591:-	0	-
#Partially deleted in new
chr16	87698148	87700150	ENSG00000104731.13|KLHDC4|pc|chr16:87698148:87700150:-	0	-
#Deleted in new
chr16	87699199	87699415	ENSG00000104731.13|KLHDC4|pc|chr16:87699199:87699415:-	0	-
#Deleted in new
chr16	87700777	87701033	ENSG00000104731.13|KLHDC4|pc|chr16:87700777:87701033:-	0	-
#Deleted in new
chr16	87700927	87701033	ENSG00000104731.13|KLHDC4|pc|chr16:87700927:87701033:-	0	-
#Deleted in new
chr16	87701553	87701667	ENSG00000104731.13|KLHDC4|pc|chr16:87701553:87701667:-	0	-
#Deleted in new
chr16	87701637	87701724	ENSG00000104731.13|KLHDC4|pc|chr16:87701637:87701724:-	0	-
#Deleted in new
chr16	87701842	87702329	ENSG00000104731.13|KLHDC4|pc|chr16:87701842:87702329:-	0	-
#Deleted in new
chr16	87703025	87703432	ENSG00000104731.13|KLHDC4|pc|chr16:87703025:87703432:-	0	-
#Deleted in new
chr16	87703082	87703187	ENSG00000104731.13|KLHDC4|pc|chr16:87703082:87703187:-	0	-
#Deleted in new
chr16	87703320	87703432	ENSG00000104731.13|KLHDC4|pc|chr16:87703320:87703432:-	0	-
#Deleted in new
chr16	87729317	87729364	ENSG00000104731.13|KLHDC4|pc|chr16:87729317:87729364:-	0	-
#Partially deleted in new
chr16	87730551	87731006	ENSG00000104731.13|KLHDC4|pc|chr16:87730551:87731006:-	0	-
#Deleted in new
chr16	87739770	87739868	ENSG00000260671.2|AC010536.2|lncRNA|chr16:87739770:87739868:-	0	-
#Deleted in new
chr16	87740581	87740691	ENSG00000260671.2|AC010536.2|lncRNA|chr16:87740581:87740691:-	0	-
#Deleted in new
chr16	87742988	87743044	ENSG00000104731.13|KLHDC4|pc|chr16:87742988:87743044:-	0	-
#Deleted in new
chr16	87747576	87747706	ENSG00000260671.2|AC010536.2|lncRNA|chr16:87747576:87747706:-	0	-
#Deleted in new
chr16	87750236	87750402	ENSG00000104731.13|KLHDC4|pc|chr16:87750236:87750402:-	0	-
#Deleted in new
chr16	87750874	87750942	ENSG00000104731.13|KLHDC4|pc|chr16:87750874:87750942:-	0	-
#Deleted in new
chr16	87757342	87757463	ENSG00000104731.13|KLHDC4|pc|chr16:87757342:87757463:-	0	-
#Deleted in new
chr16	87763484	87763603	ENSG00000104731.13|KLHDC4|pc|chr16:87763484:87763603:-	0	-
#Deleted in new
chr16	87765065	87765206	ENSG00000104731.13|KLHDC4|pc|chr16:87765065:87765206:-	0	-
#Partially deleted in new
chr16	87765065	87765340	ENSG00000104731.13|KLHDC4|pc|chr16:87765065:87765340:-	0	-
#Deleted in new
chr16	87773487	87773541	ENSG00000260498.5|AC126696.3|lncRNA|chr16:87773487:87773541:-	0	-
#Deleted in new
chr16	87773510	87773589	ENSG00000260498.5|AC126696.3|lncRNA|chr16:87773510:87773589:-	0	-
#Deleted in new
chr16	87777867	87778000	ENSG00000260498.5|AC126696.3|lncRNA|chr16:87777867:87778000:-	0	-
#Deleted in new
chr16	87778807	87779148	ENSG00000260498.5|AC126696.3|lncRNA|chr16:87778807:87779148:-	0	-
#Deleted in new
chr16	8780383	8780761	ENSG00000184857.7|TMEM186|pc|chr16:8780383:8780761:-	0	-
#Deleted in new
chr16	87806382	87806476	ENSG00000260177.1|AC126696.1|lncRNA|chr16:87806382:87806476:-	0	-
#Partially deleted in new
chr16	87830022	87833025	ENSG00000103257.8|SLC7A5|pc|chr16:87830022:87833025:-	0	-
#Deleted in new
chr16	87837412	87837663	ENSG00000260466.1|AC126696.2|lncRNA|chr16:87837412:87837663:+	0	+
#Deleted in new
chr16	87863589	87863639	ENSG00000103257.8|SLC7A5|pc|chr16:87863589:87863639:-	0	-
#Partially deleted in new
chr16	87881545	87888272	ENSG00000174990.4|CA5A|pc|chr16:87881545:87888272:-	0	-
#Deleted in new
chr16	87925538	87925625	ENSG00000174990.4|CA5A|pc|chr16:87925538:87925625:-	0	-
#Deleted in new
chr16	87949243	87949761	ENSG00000172530.20|BANP|pc|chr16:87949243:87949761:+	0	+
#Partially deleted in new
chr16	87950435	87950927	ENSG00000172530.20|BANP|pc|chr16:87950435:87950927:+	0	+
#Deleted in new
chr16	87952180	87952273	ENSG00000172530.20|BANP|pc|chr16:87952180:87952273:+	0	+
#Deleted in new
chr16	87952246	87952748	ENSG00000172530.20|BANP|pc|chr16:87952246:87952748:+	0	+
#Deleted in new
chr16	87956571	87957069	ENSG00000172530.20|BANP|pc|chr16:87956571:87957069:+	0	+
#Deleted in new
chr16	87959870	87959993	ENSG00000172530.20|BANP|pc|chr16:87959870:87959993:+	0	+
#Deleted in new
chr16	87970017	87970170	ENSG00000172530.20|BANP|pc|chr16:87970017:87970170:+	0	+
#Deleted in new
chr16	87978439	87978692	ENSG00000172530.20|BANP|pc|chr16:87978439:87978692:+	0	+
#Deleted in new
chr16	87982617	87982747	ENSG00000172530.20|BANP|pc|chr16:87982617:87982747:+	0	+
#Deleted in new
chr16	88003481	88003563	ENSG00000172530.20|BANP|pc|chr16:88003481:88003563:+	0	+
#Deleted in new
chr16	88003810	88003931	ENSG00000172530.20|BANP|pc|chr16:88003810:88003931:+	0	+
#Deleted in new
chr16	88017189	88017409	ENSG00000172530.20|BANP|pc|chr16:88017189:88017409:+	0	+
#Partially deleted in new
chr16	8806315	8807034	ENSG00000140650.11|PMM2|pc|chr16:8806315:8807034:+	0	+
#Deleted in new
chr16	88065266	88065332	ENSG00000172530.20|BANP|pc|chr16:88065266:88065332:+	0	+
#Partially deleted in new
chr16	88071072	88071929	ENSG00000172530.20|BANP|pc|chr16:88071072:88071929:+	0	+
#Partially deleted in new
chr16	8807563	8811178	ENSG00000140650.11|PMM2|pc|chr16:8807563:8811178:+	0	+
#Deleted in new
chr16	88079160	88079346	ENSG00000261193.1|AC134312.4|lncRNA|chr16:88079160:88079346:-	0	-
#Deleted in new
chr16	88087010	88087383	ENSG00000261193.1|AC134312.4|lncRNA|chr16:88087010:88087383:-	0	-
#Deleted in new
chr16	88087386	88087517	ENSG00000260166.1|AC134312.3|lncRNA|chr16:88087386:88087517:+	0	+
#Deleted in new
chr16	88087850	88087932	ENSG00000260166.1|AC134312.3|lncRNA|chr16:88087850:88087932:+	0	+
#Partially deleted in new
chr16	88088040	88091242	ENSG00000205037.2|AC134312.1|lncRNA|chr16:88088040:88091242:-	0	-
#Deleted in new
chr16	88099408	88099530	ENSG00000205037.2|AC134312.1|lncRNA|chr16:88099408:88099530:-	0	-
#Deleted in new
chr16	88177288	88177597	ENSG00000260162.2|AC134312.2|lncRNA|chr16:88177288:88177597:+	0	+
#Deleted in new
chr16	88177297	88178610	ENSG00000261327.4|AC134312.5|lncRNA|chr16:88177297:88178610:-	0	-
#Deleted in new
chr16	88178048	88178646	ENSG00000261327.4|AC134312.5|lncRNA|chr16:88178048:88178646:-	0	-
#Deleted in new
chr16	88178347	88178646	ENSG00000260162.2|AC134312.2|lncRNA|chr16:88178347:88178646:+	0	+
#Deleted in new
chr16	88178783	88178941	ENSG00000261327.4|AC134312.5|lncRNA|chr16:88178783:88178941:-	0	-
#Partially deleted in new
chr16	88191485	88191736	ENSG00000261816.1|AC134312.6|lncRNA|chr16:88191485:88191736:-	0	-
#Deleted in new
chr16	88193576	88193667	ENSG00000261816.1|AC134312.6|lncRNA|chr16:88193576:88193667:-	0	-
#Deleted in new
chr16	88234784	88234903	ENSG00000261273.1|AC138512.1|lncRNA|chr16:88234784:88234903:+	0	+
#Deleted in new
chr16	88276473	88276575	ENSG00000261273.1|AC138512.1|lncRNA|chr16:88276473:88276575:+	0	+
#Deleted in new
chr16	8829192	8829258	ENSG00000140650.11|PMM2|pc|chr16:8829192:8829258:+	0	+
#Deleted in new
chr16	88294718	88294841	ENSG00000261273.1|AC138512.1|lncRNA|chr16:88294718:88294841:+	0	+
#Deleted in new
chr16	88302421	88302511	ENSG00000261273.1|AC138512.1|lncRNA|chr16:88302421:88302511:+	0	+
#Deleted in new
chr16	883779	884161	ENSG00000260022.1|AL031716.1|lncRNA|chr16:883779:884161:+	0	+
#Deleted in new
chr16	8842206	8842379	ENSG00000140650.11|PMM2|pc|chr16:8842206:8842379:+	0	+
#Partially deleted in new
chr16	8848104	8849655	ENSG00000260276.2|AC022167.2|lncRNA|chr16:8848104:8849655:+	0	+
#Deleted in new
chr16	8848635	8848724	ENSG00000260350.1|AC012173.1|lncRNA|chr16:8848635:8848724:-	0	-
#Deleted in new
chr16	884942	885090	ENSG00000260022.1|AL031716.1|lncRNA|chr16:884942:885090:+	0	+
#Deleted in new
chr16	8849848	8849993	ENSG00000260276.2|AC022167.2|lncRNA|chr16:8849848:8849993:+	0	+
#Deleted in new
chr16	8850932	8851050	ENSG00000260276.2|AC022167.2|lncRNA|chr16:8850932:8851050:+	0	+
#Deleted in new
chr16	88530441	88530608	ENSG00000261744.1|AC116552.1|lncRNA|chr16:88530441:88530608:-	0	-
#Deleted in new
chr16	88530931	88531053	ENSG00000261744.1|AC116552.1|lncRNA|chr16:88530931:88531053:-	0	-
#Deleted in new
chr16	8853311	8853636	ENSG00000259939.1|AC022167.1|lncRNA|chr16:8853311:8853636:+	0	+
#Deleted in new
chr16	8859812	8860456	ENSG00000260276.2|AC022167.2|lncRNA|chr16:8859812:8860456:+	0	+
#Deleted in new
chr16	8860104	8860218	ENSG00000153048.10|CARHSP1|pc|chr16:8860104:8860218:-	0	-
#Deleted in new
chr16	8860104	8860309	ENSG00000153048.10|CARHSP1|pc|chr16:8860104:8860309:-	0	-
#Deleted in new
chr16	8860127	8860417	ENSG00000260276.2|AC022167.2|lncRNA|chr16:8860127:8860417:+	0	+
#Partially deleted in new
chr16	88625201	88625684	ENSG00000158545.15|ZC3H18|pc|chr16:88625201:88625684:+	0	+
#Partially deleted in new
chr16	88625201	88626699	ENSG00000158545.15|ZC3H18|pc|chr16:88625201:88626699:+	0	+
#Partially deleted in new
chr16	88630154	88630581	ENSG00000158545.15|ZC3H18|pc|chr16:88630154:88630581:+	0	+
#Deleted in new
chr16	88644741	88645429	ENSG00000051523.10|CYBA|pc|chr16:88644741:88645429:-	0	-
#Partially deleted in new
chr16	88645086	88646197	ENSG00000051523.10|CYBA|pc|chr16:88645086:88646197:-	0	-
#Deleted in new
chr16	88647692	88647939	ENSG00000051523.10|CYBA|pc|chr16:88647692:88647939:-	0	-
#Deleted in new
chr16	88658972	88659328	ENSG00000167508.11|MVD|pc|chr16:88658972:88659328:-	0	-
#Deleted in new
chr16	88660519	88660637	ENSG00000167508.11|MVD|pc|chr16:88660519:88660637:-	0	-
#Deleted in new
chr16	88660747	88660841	ENSG00000167508.11|MVD|pc|chr16:88660747:88660841:-	0	-
#Deleted in new
chr16	88660747	88660872	ENSG00000167508.11|MVD|pc|chr16:88660747:88660872:-	0	-
#Deleted in new
chr16	88662101	88662167	ENSG00000167508.11|MVD|pc|chr16:88662101:88662167:-	0	-
#Deleted in new
chr16	88662114	88662167	ENSG00000167508.11|MVD|pc|chr16:88662114:88662167:-	0	-
#Deleted in new
chr16	88662711	88662781	ENSG00000167508.11|MVD|pc|chr16:88662711:88662781:-	0	-
#Deleted in new
chr16	88662711	88662907	ENSG00000167508.11|MVD|pc|chr16:88662711:88662907:-	0	-
#Partially deleted in new
chr16	88663368	88663400	ENSG00000260630.6|SNAI3-AS1|lncRNA|chr16:88663368:88663400:+	0	+
#Deleted in new
chr16	88663379	88663400	ENSG00000260630.6|SNAI3-AS1|lncRNA|chr16:88663379:88663400:+	0	+
#Deleted in new
chr16	88671276	88671465	ENSG00000260630.6|SNAI3-AS1|lncRNA|chr16:88671276:88671465:+	0	+
#Deleted in new
chr16	88671276	88671693	ENSG00000260630.6|SNAI3-AS1|lncRNA|chr16:88671276:88671693:+	0	+
#Deleted in new
chr16	88671812	88672114	ENSG00000260630.6|SNAI3-AS1|lncRNA|chr16:88671812:88672114:+	0	+
#Deleted in new
chr16	88671812	88672122	ENSG00000260630.6|SNAI3-AS1|lncRNA|chr16:88671812:88672122:+	0	+
#Deleted in new
chr16	88671812	88672179	ENSG00000260630.6|SNAI3-AS1|lncRNA|chr16:88671812:88672179:+	0	+
#Deleted in new
chr16	8867251	8867428	ENSG00000153048.10|CARHSP1|pc|chr16:8867251:8867428:-	0	-
#Deleted in new
chr16	88673603	88673647	ENSG00000260630.6|SNAI3-AS1|lncRNA|chr16:88673603:88673647:+	0	+
#Deleted in new
chr16	8867706	8867887	ENSG00000153048.10|CARHSP1|pc|chr16:8867706:8867887:-	0	-
#Partially deleted in new
chr16	8868048	8868160	ENSG00000153048.10|CARHSP1|pc|chr16:8868048:8868160:-	0	-
#Deleted in new
chr16	88686790	88687186	ENSG00000260630.6|SNAI3-AS1|lncRNA|chr16:88686790:88687186:+	0	+
#Deleted in new
chr16	8869612	8870032	ENSG00000261481.1|AC022167.4|lncRNA|chr16:8869612:8870032:+	0	+
#Deleted in new
chr16	88702772	88703241	ENSG00000158717.10|RNF166|pc|chr16:88702772:88703241:-	0	-
#Partially deleted in new
chr16	88702789	88703617	ENSG00000158717.10|RNF166|pc|chr16:88702789:88703617:-	0	-
#Partially deleted in new
chr16	88717022	88718318	ENSG00000103335.21|PIEZO1|pc|chr16:88717022:88718318:-	0	-
#Deleted in new
chr16	88717536	88717611	ENSG00000103335.21|PIEZO1|pc|chr16:88717536:88717611:-	0	-
#Deleted in new
chr16	88717536	88717615	ENSG00000103335.21|PIEZO1|pc|chr16:88717536:88717615:-	0	-
#Deleted in new
chr16	88717721	88717808	ENSG00000103335.21|PIEZO1|pc|chr16:88717721:88717808:-	0	-
#Partially deleted in new
chr16	88718971	88719721	ENSG00000103335.21|PIEZO1|pc|chr16:88718971:88719721:-	0	-
#Partially deleted in new
chr16	88742766	88743490	ENSG00000182376.2|AC138028.1|lncRNA|chr16:88742766:88743490:+	0	+
#Partially deleted in new
chr16	88742820	88744344	ENSG00000182376.2|AC138028.1|lncRNA|chr16:88742820:88744344:+	0	+
#Deleted in new
chr16	88743591	88744344	ENSG00000182376.2|AC138028.1|lncRNA|chr16:88743591:88744344:+	0	+
#Deleted in new
chr16	88745088	88745464	ENSG00000182376.2|AC138028.1|lncRNA|chr16:88745088:88745464:+	0	+
#Deleted in new
chr16	88745088	88745748	ENSG00000182376.2|AC138028.1|lncRNA|chr16:88745088:88745748:+	0	+
#Partially deleted in new
chr16	88808114	88809258	ENSG00000167513.8|CDT1|pc|chr16:88808114:88809258:+	0	+
#Split in new
chr16	88809338	88809840	ENSG00000198931.10|APRT|pc|chr16:88809338:88809840:-	0	-
#Deleted in new
chr16	88809410	88809535	ENSG00000198931.10|APRT|pc|chr16:88809410:88809535:-	0	-
#Partially deleted in new
chr16	88813733	88814525	ENSG00000141012.12|GALNS|pc|chr16:88813733:88814525:-	0	-
#Partially deleted in new
chr16	88813734	88814525	ENSG00000141012.12|GALNS|pc|chr16:88813734:88814525:-	0	-
#Partially deleted in new
chr16	88813735	88814525	ENSG00000141012.12|GALNS|pc|chr16:88813735:88814525:-	0	-
#Deleted in new
chr16	8883209	8883286	ENSG00000283516.1|AC022167.5|pc|chr16:8883209:8883286:+	0	+
#Deleted in new
chr16	88840334	88840852	ENSG00000141012.12|GALNS|pc|chr16:88840334:88840852:-	0	-
#Partially deleted in new
chr16	88840697	88841094	ENSG00000141012.12|GALNS|pc|chr16:88840697:88841094:-	0	-
#Partially deleted in new
chr16	8885094	8885179	ENSG00000283516.1|AC022167.5|pc|chr16:8885094:8885179:+	0	+
#Deleted in new
chr16	88855127	88855522	ENSG00000141012.12|GALNS|pc|chr16:88855127:88855522:-	0	-
#Deleted in new
chr16	88855752	88856301	ENSG00000141012.12|GALNS|pc|chr16:88855752:88856301:-	0	-
#Deleted in new
chr16	88856206	88856301	ENSG00000141012.12|GALNS|pc|chr16:88856206:88856301:-	0	-
#Deleted in new
chr16	88856219	88856246	ENSG00000167515.10|TRAPPC2L|pc|chr16:88856219:88856246:+	0	+
#Deleted in new
chr16	88856450	88856575	ENSG00000141012.12|GALNS|pc|chr16:88856450:88856575:-	0	-
#Deleted in new
chr16	88883514	88883715	ENSG00000259881.1|AC092384.2|lncRNA|chr16:88883514:88883715:+	0	+
#Partially deleted in new
chr16	88883514	88883919	ENSG00000259881.1|AC092384.2|lncRNA|chr16:88883514:88883919:+	0	+
#Partially deleted in new
chr16	88883514	88883926	ENSG00000259881.1|AC092384.2|lncRNA|chr16:88883514:88883926:+	0	+
#Deleted in new
chr16	88902405	88902515	ENSG00000129993.14|CBFA2T3|pc|chr16:88902405:88902515:-	0	-
#Deleted in new
chr16	88950256	88951524	ENSG00000205018.2|AC092384.1|lncRNA|chr16:88950256:88951524:+	0	+
#Deleted in new
chr16	88957590	88957775	ENSG00000129993.14|CBFA2T3|pc|chr16:88957590:88957775:-	0	-
#Deleted in new
chr16	88992030	88992229	ENSG00000259989.1|AC135782.2|lncRNA|chr16:88992030:88992229:+	0	+
#Deleted in new
chr16	88995185	88995369	ENSG00000259989.1|AC135782.2|lncRNA|chr16:88995185:88995369:+	0	+
#Deleted in new
chr16	89093808	89093992	ENSG00000176715.15|ACSF3|pc|chr16:89093808:89093992:+	0	+
#Deleted in new
chr16	89093808	89093996	ENSG00000176715.15|ACSF3|pc|chr16:89093808:89093996:+	0	+
#Deleted in new
chr16	89093854	89093992	ENSG00000176715.15|ACSF3|pc|chr16:89093854:89093992:+	0	+
#Deleted in new
chr16	89093867	89093996	ENSG00000176715.15|ACSF3|pc|chr16:89093867:89093996:+	0	+
#Deleted in new
chr16	89093882	89093996	ENSG00000176715.15|ACSF3|pc|chr16:89093882:89093996:+	0	+
#Deleted in new
chr16	89093897	89093992	ENSG00000176715.15|ACSF3|pc|chr16:89093897:89093992:+	0	+
#Deleted in new
chr16	89093903	89093992	ENSG00000176715.15|ACSF3|pc|chr16:89093903:89093992:+	0	+
#Deleted in new
chr16	89095194	89095303	ENSG00000176715.15|ACSF3|pc|chr16:89095194:89095303:+	0	+
#Deleted in new
chr16	89102351	89102400	ENSG00000176715.15|ACSF3|pc|chr16:89102351:89102400:+	0	+
#Partially deleted in new
chr16	89141066	89141276	ENSG00000176715.15|ACSF3|pc|chr16:89141066:89141276:+	0	+
#Split in new
chr16	89147566	89154586	ENSG00000176715.15|ACSF3|pc|chr16:89147566:89154586:+	0	+
#Partially deleted in new
chr16	89151027	89151222	ENSG00000176715.15|ACSF3|pc|chr16:89151027:89151222:+	0	+
#Deleted in new
chr16	89159707	89159881	ENSG00000180422.3|LINC00304|lncRNA|chr16:89159707:89159881:+	0	+
#Deleted in new
chr16	89159712	89160562	ENSG00000180422.3|LINC00304|lncRNA|chr16:89159712:89160562:+	0	+
#Deleted in new
chr16	89160215	89161559	ENSG00000180422.3|LINC00304|lncRNA|chr16:89160215:89161559:+	0	+
#Deleted in new
chr16	89162381	89164245	ENSG00000180422.3|LINC00304|lncRNA|chr16:89162381:89164245:+	0	+
#Deleted in new
chr16	89163121	89163675	ENSG00000180422.3|LINC00304|lncRNA|chr16:89163121:89163675:+	0	+
#Deleted in new
chr16	89166382	89166499	ENSG00000205015.1|LINC02138|lncRNA|chr16:89166382:89166499:+	0	+
#Deleted in new
chr16	89167136	89167306	ENSG00000205015.1|LINC02138|lncRNA|chr16:89167136:89167306:+	0	+
#Deleted in new
chr16	89168108	89169147	ENSG00000205015.1|LINC02138|lncRNA|chr16:89168108:89169147:+	0	+
#Duplicated in new
chr16	89196150	89196305	ENSG00000259803.6|SLC22A31|pc|chr16:89196150:89196305:-	0	-
#Deleted in new
chr16	89196346	89196386	ENSG00000259803.6|SLC22A31|pc|chr16:89196346:89196386:-	0	-
#Deleted in new
chr16	89198121	89198336	ENSG00000259803.6|SLC22A31|pc|chr16:89198121:89198336:-	0	-
#Deleted in new
chr16	89198441	89198550	ENSG00000259803.6|SLC22A31|pc|chr16:89198441:89198550:-	0	-
#Deleted in new
chr16	89198651	89198797	ENSG00000259803.6|SLC22A31|pc|chr16:89198651:89198797:-	0	-
#Deleted in new
chr16	89198651	89198840	ENSG00000259803.6|SLC22A31|pc|chr16:89198651:89198840:-	0	-
#Deleted in new
chr16	89198651	89198867	ENSG00000259803.6|SLC22A31|pc|chr16:89198651:89198867:-	0	-
#Deleted in new
chr16	89199022	89199191	ENSG00000259803.6|SLC22A31|pc|chr16:89199022:89199191:-	0	-
#Deleted in new
chr16	89199104	89199191	ENSG00000259803.6|SLC22A31|pc|chr16:89199104:89199191:-	0	-
#Deleted in new
chr16	89199411	89199655	ENSG00000259803.6|SLC22A31|pc|chr16:89199411:89199655:-	0	-
#Deleted in new
chr16	89199412	89199567	ENSG00000259803.6|SLC22A31|pc|chr16:89199412:89199567:-	0	-
#Deleted in new
chr16	89199712	89199816	ENSG00000259803.6|SLC22A31|pc|chr16:89199712:89199816:-	0	-
#Deleted in new
chr16	89199712	89200121	ENSG00000259803.6|SLC22A31|pc|chr16:89199712:89200121:-	0	-
#Deleted in new
chr16	89199771	89200318	ENSG00000259803.6|SLC22A31|pc|chr16:89199771:89200318:-	0	-
#Deleted in new
chr16	89201418	89201664	ENSG00000259803.6|SLC22A31|pc|chr16:89201418:89201664:-	0	-
#Deleted in new
chr16	89215210	89217653	ENSG00000259877.2|AC009113.1|lncRNA|chr16:89215210:89217653:-	0	-
#Deleted in new
chr16	89217702	89217910	ENSG00000170100.13|ZNF778|pc|chr16:89217702:89217910:+	0	+
#Deleted in new
chr16	89217709	89217910	ENSG00000170100.13|ZNF778|pc|chr16:89217709:89217910:+	0	+
#Deleted in new
chr16	89218241	89218307	ENSG00000170100.13|ZNF778|pc|chr16:89218241:89218307:+	0	+
#Duplicated in new
chr16	89220996	89221152	ENSG00000170100.13|ZNF778|pc|chr16:89220996:89221152:+	0	+
#Split in new
chr16	89226693	89237071	ENSG00000170100.13|ZNF778|pc|chr16:89226693:89237071:+	0	+
#Partially deleted in new
chr16	89269938	89273044	ENSG00000268218.1|AC137932.3|lncRNA|chr16:89269938:89273044:+	0	+
#Partially deleted in new
chr16	89277477	89279716	ENSG00000167522.14|ANKRD11|pc|chr16:89277477:89279716:-	0	-
#Deleted in new
chr16	89297507	89297750	ENSG00000260279.2|AC137932.1|lncRNA|chr16:89297507:89297750:+	0	+
#Deleted in new
chr16	89297855	89297962	ENSG00000260279.2|AC137932.1|lncRNA|chr16:89297855:89297962:+	0	+
#Deleted in new
chr16	89298150	89298316	ENSG00000260279.2|AC137932.1|lncRNA|chr16:89298150:89298316:+	0	+
#Deleted in new
chr16	89298150	89298317	ENSG00000260279.2|AC137932.1|lncRNA|chr16:89298150:89298317:+	0	+
#Deleted in new
chr16	89300644	89300962	ENSG00000167522.14|ANKRD11|pc|chr16:89300644:89300962:-	0	-
#Deleted in new
chr16	89300695	89300962	ENSG00000167522.14|ANKRD11|pc|chr16:89300695:89300962:-	0	-
#Deleted in new
chr16	89300765	89300962	ENSG00000167522.14|ANKRD11|pc|chr16:89300765:89300962:-	0	-
#Partially deleted in new
chr16	89301509	89301636	ENSG00000167522.14|ANKRD11|pc|chr16:89301509:89301636:-	0	-
#Deleted in new
chr16	89313316	89313436	ENSG00000167522.14|ANKRD11|pc|chr16:89313316:89313436:-	0	-
#Partially deleted in new
chr16	89313316	89313585	ENSG00000167522.14|ANKRD11|pc|chr16:89313316:89313585:-	0	-
#Partially deleted in new
chr16	89313316	89313589	ENSG00000167522.14|ANKRD11|pc|chr16:89313316:89313589:-	0	-
#Deleted in new
chr16	89319975	89320356	ENSG00000167522.14|ANKRD11|pc|chr16:89319975:89320356:-	0	-
#Deleted in new
chr16	89321132	89321227	ENSG00000261253.2|AC137932.2|lncRNA|chr16:89321132:89321227:+	0	+
#Deleted in new
chr16	89323098	89323333	ENSG00000261253.2|AC137932.2|lncRNA|chr16:89323098:89323333:+	0	+
#Deleted in new
chr16	89323223	89323333	ENSG00000261253.2|AC137932.2|lncRNA|chr16:89323223:89323333:+	0	+
#Deleted in new
chr16	89323765	89323920	ENSG00000261253.2|AC137932.2|lncRNA|chr16:89323765:89323920:+	0	+
#Deleted in new
chr16	89324235	89324923	ENSG00000261253.2|AC137932.2|lncRNA|chr16:89324235:89324923:+	0	+
#Deleted in new
chr16	89324235	89325110	ENSG00000261253.2|AC137932.2|lncRNA|chr16:89324235:89325110:+	0	+
#Deleted in new
chr16	89328942	89328986	ENSG00000167522.14|ANKRD11|pc|chr16:89328942:89328986:-	0	-
#Deleted in new
chr16	89339869	89339970	ENSG00000167522.14|ANKRD11|pc|chr16:89339869:89339970:-	0	-
#Partially deleted in new
chr16	89361517	89361677	ENSG00000167522.14|ANKRD11|pc|chr16:89361517:89361677:-	0	-
#Deleted in new
chr16	89372853	89373134	ENSG00000167522.14|ANKRD11|pc|chr16:89372853:89373134:-	0	-
#Deleted in new
chr16	89392374	89392679	ENSG00000261574.1|AC092120.1|lncRNA|chr16:89392374:89392679:-	0	-
#Deleted in new
chr16	89412449	89412564	ENSG00000261574.1|AC092120.1|lncRNA|chr16:89412449:89412564:-	0	-
#Deleted in new
chr16	89418283	89418368	ENSG00000167522.14|ANKRD11|pc|chr16:89418283:89418368:-	0	-
#Deleted in new
chr16	89420074	89420424	ENSG00000261692.1|AC092120.2|lncRNA|chr16:89420074:89420424:-	0	-
#Deleted in new
chr16	89422161	89422226	ENSG00000261692.1|AC092120.2|lncRNA|chr16:89422161:89422226:-	0	-
#Partially deleted in new
chr16	89490916	89491386	ENSG00000197912.14|SPG7|pc|chr16:89490916:89491386:+	0	+
#Deleted in new
chr16	89491217	89491386	ENSG00000197912.14|SPG7|pc|chr16:89491217:89491386:+	0	+
#Deleted in new
chr16	89492016	89492633	ENSG00000261118.1|AC092123.1|lncRNA|chr16:89492016:89492633:-	0	-
#Deleted in new
chr16	89492402	89492633	ENSG00000261118.1|AC092123.1|lncRNA|chr16:89492402:89492633:-	0	-
#Deleted in new
chr16	89493497	89493597	ENSG00000261118.1|AC092123.1|lncRNA|chr16:89493497:89493597:-	0	-
#Deleted in new
chr16	89493719	89493793	ENSG00000261118.1|AC092123.1|lncRNA|chr16:89493719:89493793:-	0	-
#Deleted in new
chr16	8949553	8949653	ENSG00000187555.14|USP7|pc|chr16:8949553:8949653:-	0	-
#Deleted in new
chr16	89498085	89499285	ENSG00000197912.14|SPG7|pc|chr16:89498085:89499285:+	0	+
#Deleted in new
chr16	89507501	89507740	ENSG00000197912.14|SPG7|pc|chr16:89507501:89507740:+	0	+
#Deleted in new
chr16	89508712	89508991	ENSG00000197912.14|SPG7|pc|chr16:89508712:89508991:+	0	+
#Deleted in new
chr16	89514345	89514571	ENSG00000197912.14|SPG7|pc|chr16:89514345:89514571:+	0	+
#Partially deleted in new
chr16	89516796	89522217	ENSG00000274627.1|AC092123.2|lncRNA|chr16:89516796:89522217:+	0	+
#Partially deleted in new
chr16	89532462	89533791	ENSG00000197912.14|SPG7|pc|chr16:89532462:89533791:+	0	+
#Deleted in new
chr16	89545871	89546030	ENSG00000197912.14|SPG7|pc|chr16:89545871:89546030:+	0	+
#Deleted in new
chr16	89546131	89546181	ENSG00000197912.14|SPG7|pc|chr16:89546131:89546181:+	0	+
#Deleted in new
chr16	89548888	89549336	ENSG00000197912.14|SPG7|pc|chr16:89548888:89549336:+	0	+
#Deleted in new
chr16	89548979	89549336	ENSG00000197912.14|SPG7|pc|chr16:89548979:89549336:+	0	+
#Deleted in new
chr16	89549080	89549336	ENSG00000197912.14|SPG7|pc|chr16:89549080:89549336:+	0	+
#Partially deleted in new
chr16	89549845	89550609	ENSG00000197912.14|SPG7|pc|chr16:89549845:89550609:+	0	+
#Partially deleted in new
chr16	89554485	89555002	ENSG00000197912.14|SPG7|pc|chr16:89554485:89555002:+	0	+
#Deleted in new
chr16	89555863	89556085	ENSG00000197912.14|SPG7|pc|chr16:89555863:89556085:+	0	+
#Partially deleted in new
chr16	89562883	89563952	ENSG00000167526.13|RPL13|pc|chr16:89562883:89563952:+	0	+
#Partially deleted in new
chr16	89562883	89564542	ENSG00000167526.13|RPL13|pc|chr16:89562883:89564542:+	0	+
#Partially deleted in new
chr16	89562883	89566828	ENSG00000167526.13|RPL13|pc|chr16:89562883:89566828:+	0	+
#Deleted in new
chr16	89578856	89578996	ENSG00000178773.14|CPNE7|pc|chr16:89578856:89578996:+	0	+
#Deleted in new
chr16	89583443	89583528	ENSG00000178773.14|CPNE7|pc|chr16:89583443:89583528:+	0	+
#Deleted in new
chr16	89594099	89594158	ENSG00000178773.14|CPNE7|pc|chr16:89594099:89594158:+	0	+
#Deleted in new
chr16	89613307	89613404	ENSG00000015413.9|DPEP1|pc|chr16:89613307:89613404:+	0	+
#Deleted in new
chr16	89616872	89616914	ENSG00000015413.9|DPEP1|pc|chr16:89616872:89616914:+	0	+
#Deleted in new
chr16	89626457	89626493	ENSG00000015413.9|DPEP1|pc|chr16:89626457:89626493:+	0	+
#Deleted in new
chr16	8964393	8964514	ENSG00000187555.14|USP7|pc|chr16:8964393:8964514:-	0	-
#Partially deleted in new
chr16	89658247	89661508	ENSG00000167523.13|SPATA33|pc|chr16:89658247:89661508:+	0	+
#Partially deleted in new
chr16	89660539	89661483	ENSG00000167523.13|SPATA33|pc|chr16:89660539:89661483:+	0	+
#Deleted in new
chr16	89660827	89661111	ENSG00000167523.13|SPATA33|pc|chr16:89660827:89661111:+	0	+
#Deleted in new
chr16	89661300	89661508	ENSG00000167523.13|SPATA33|pc|chr16:89661300:89661508:+	0	+
#Deleted in new
chr16	8966752	8966990	ENSG00000260979.1|AC022167.3|lncRNA|chr16:8966752:8966990:+	0	+
#Deleted in new
chr16	89667992	89668044	ENSG00000167523.13|SPATA33|pc|chr16:89667992:89668044:+	0	+
#Partially deleted in new
chr16	89669285	89670297	ENSG00000167523.13|SPATA33|pc|chr16:89669285:89670297:+	0	+
#Deleted in new
chr16	89680736	89682496	ENSG00000185324.21|CDK10|pc|chr16:89680736:89682496:+	0	+
#Deleted in new
chr16	89682619	89682842	ENSG00000260259.1|LINC02166|lncRNA|chr16:89682619:89682842:-	0	-
#Partially deleted in new
chr16	89684641	89685304	ENSG00000275734.1|AC010538.1|lncRNA|chr16:89684641:89685304:+	0	+
#Deleted in new
chr16	89685300	89685675	ENSG00000260259.1|LINC02166|lncRNA|chr16:89685300:89685675:-	0	-
#Partially deleted in new
chr16	89686950	89687334	ENSG00000185324.21|CDK10|pc|chr16:89686950:89687334:+	0	+
#Partially deleted in new
chr16	89686971	89687334	ENSG00000185324.21|CDK10|pc|chr16:89686971:89687334:+	0	+
#Deleted in new
chr16	89687448	89687548	ENSG00000185324.21|CDK10|pc|chr16:89687448:89687548:+	0	+
#Partially deleted in new
chr16	89687588	89687815	ENSG00000185324.21|CDK10|pc|chr16:89687588:89687815:+	0	+
#Deleted in new
chr16	89711598	89711644	ENSG00000075399.13|VPS9D1|pc|chr16:89711598:89711644:-	0	-
#Partially deleted in new
chr16	89731525	89733557	ENSG00000158805.11|ZNF276|pc|chr16:89731525:89733557:+	0	+
#Deleted in new
chr16	89762637	89762793	ENSG00000187741.14|FANCA|pc|chr16:89762637:89762793:-	0	-
#Deleted in new
chr16	89778340	89778462	ENSG00000187741.14|FANCA|pc|chr16:89778340:89778462:-	0	-
#Deleted in new
chr16	89818178	89818538	ENSG00000204991.10|SPIRE2|pc|chr16:89818178:89818538:+	0	+
#Deleted in new
chr16	89818249	89818538	ENSG00000204991.10|SPIRE2|pc|chr16:89818249:89818538:+	0	+
#Deleted in new
chr16	89836214	89836433	ENSG00000204991.10|SPIRE2|pc|chr16:89836214:89836433:+	0	+
#Deleted in new
chr16	89845625	89847156	ENSG00000204991.10|SPIRE2|pc|chr16:89845625:89847156:+	0	+
#Partially deleted in new
chr16	89861965	89863610	ENSG00000204991.10|SPIRE2|pc|chr16:89861965:89863610:+	0	+
#Deleted in new
chr16	89874549	89874749	ENSG00000141002.19|TCF25|pc|chr16:89874549:89874749:+	0	+
#Deleted in new
chr16	89874798	89874855	ENSG00000141002.19|TCF25|pc|chr16:89874798:89874855:+	0	+
#Deleted in new
chr16	89878460	89878627	ENSG00000141002.19|TCF25|pc|chr16:89878460:89878627:+	0	+
#Deleted in new
chr16	89889227	89890633	ENSG00000141002.19|TCF25|pc|chr16:89889227:89890633:+	0	+
#Deleted in new
chr16	89908965	89909083	ENSG00000141002.19|TCF25|pc|chr16:89908965:89909083:+	0	+
#Deleted in new
chr16	89908965	89909107	ENSG00000141002.19|TCF25|pc|chr16:89908965:89909107:+	0	+
#Deleted in new
chr16	89908965	89909174	ENSG00000141002.19|TCF25|pc|chr16:89908965:89909174:+	0	+
#Partially deleted in new
chr16	89909427	89910663	ENSG00000141002.19|TCF25|pc|chr16:89909427:89910663:+	0	+
#Deleted in new
chr16	89909839	89909925	ENSG00000141002.19|TCF25|pc|chr16:89909839:89909925:+	0	+
#Deleted in new
chr16	89910292	89910356	ENSG00000141002.19|TCF25|pc|chr16:89910292:89910356:+	0	+
#Partially deleted in new
chr16	89913231	89915168	ENSG00000258839.3|MC1R|pc|chr16:89913231:89915168:+	0	+
#Partially deleted in new
chr16	89913417	89915140	ENSG00000258839.3|MC1R|pc|chr16:89913417:89915140:+	0	+
#Deleted in new
chr16	89914846	89915140	ENSG00000258839.3|MC1R|pc|chr16:89914846:89915140:+	0	+
#Partially deleted in new
chr16	89917875	89918047	ENSG00000258839.3|MC1R|pc|chr16:89917875:89918047:+	0	+
#Deleted in new
chr16	89931680	89932108	ENSG00000258947.6|TUBB3|pc|chr16:89931680:89932108:+	0	+
#Deleted in new
chr16	89931800	89931939	ENSG00000258947.6|TUBB3|pc|chr16:89931800:89931939:+	0	+
#Partially deleted in new
chr16	89933723	89934301	ENSG00000258947.6|TUBB3|pc|chr16:89933723:89934301:+	0	+
#Deleted in new
chr16	89938523	89938761	ENSG00000258947.6|TUBB3|pc|chr16:89938523:89938761:+	0	+
#Partially deleted in new
chr16	89947924	89948814	ENSG00000140995.16|DEF8|pc|chr16:89947924:89948814:+	0	+
#Partially deleted in new
chr16	89969790	89970931	ENSG00000261317.1|AC092143.3|lncRNA|chr16:89969790:89970931:+	0	+
#Partially deleted in new
chr16	89969790	89972534	ENSG00000177946.5|CENPBD1|pc|chr16:89969790:89972534:-	0	-
#Partially deleted in new
chr16	89970047	89970363	ENSG00000177946.5|CENPBD1|pc|chr16:89970047:89970363:-	0	-
#Partially deleted in new
chr16	89971785	89972544	ENSG00000261317.1|AC092143.3|lncRNA|chr16:89971785:89972544:+	0	+
#Deleted in new
chr16	89971928	89972185	ENSG00000177946.5|CENPBD1|pc|chr16:89971928:89972185:-	0	-
#Partially deleted in new
chr16	90009283	90010211	ENSG00000003249.13|DBNDD1|pc|chr16:90009283:90010211:-	0	-
#Deleted in new
chr16	90009956	90010121	ENSG00000003249.13|DBNDD1|pc|chr16:90009956:90010121:-	0	-
#Deleted in new
chr16	90011583	90011696	ENSG00000003249.13|DBNDD1|pc|chr16:90011583:90011696:-	0	-
#Partially deleted in new
chr16	90019727	90020128	ENSG00000003249.13|DBNDD1|pc|chr16:90019727:90020128:-	0	-
#Deleted in new
chr16	90020043	90020156	ENSG00000141013.16|GAS8|pc|chr16:90020043:90020156:+	0	+
#Deleted in new
chr16	90020829	90020911	ENSG00000141013.16|GAS8|pc|chr16:90020829:90020911:+	0	+
#Partially deleted in new
chr16	90022046	90022206	ENSG00000141013.16|GAS8|pc|chr16:90022046:90022206:+	0	+
#Partially deleted in new
chr16	90022085	90022206	ENSG00000141013.16|GAS8|pc|chr16:90022085:90022206:+	0	+
#Deleted in new
chr16	90028907	90029342	ENSG00000221819.5|GAS8-AS1|lncRNA|chr16:90028907:90029342:-	0	-
#Deleted in new
chr16	90028934	90029367	ENSG00000221819.5|GAS8-AS1|lncRNA|chr16:90028934:90029367:-	0	-
#Deleted in new
chr16	90029540	90029679	ENSG00000141013.16|GAS8|pc|chr16:90029540:90029679:+	0	+
#Partially deleted in new
chr16	90031175	90031189	ENSG00000141013.16|GAS8|pc|chr16:90031175:90031189:+	0	+
#Deleted in new
chr16	90042312	90042428	ENSG00000141013.16|GAS8|pc|chr16:90042312:90042428:+	0	+
#Deleted in new
chr16	90042376	90042535	ENSG00000141013.16|GAS8|pc|chr16:90042376:90042535:+	0	+
#Deleted in new
chr16	90042469	90042535	ENSG00000141013.16|GAS8|pc|chr16:90042469:90042535:+	0	+
#Deleted in new
chr16	90069977	90070052	ENSG00000126856.13|PRDM7|pc|chr16:90069977:90070052:-	0	-
#Deleted in new
chr16	90083145	90083255	ENSG00000126856.13|PRDM7|pc|chr16:90083145:90083255:-	0	-
#Deleted in new
chr16	90086772	90086870	ENSG00000126856.13|PRDM7|pc|chr16:90086772:90086870:-	0	-
#Deleted in new
chr16	90091606	90092072	ENSG00000126856.13|PRDM7|pc|chr16:90091606:90092072:-	0	-
#Deleted in new
chr16	90102270	90102442	ENSG00000260528.4|FAM157C|lncRNA|chr16:90102270:90102442:+	0	+
#Deleted in new
chr16	90105094	90105146	ENSG00000260507.1|AC133919.1|lncRNA|chr16:90105094:90105146:-	0	-
#Deleted in new
chr16	90105952	90106316	ENSG00000260507.1|AC133919.1|lncRNA|chr16:90105952:90106316:-	0	-
#Deleted in new
chr16	90106158	90106705	ENSG00000260528.4|FAM157C|lncRNA|chr16:90106158:90106705:+	0	+
#Deleted in new
chr16	90106460	90106705	ENSG00000260528.4|FAM157C|lncRNA|chr16:90106460:90106705:+	0	+
#Deleted in new
chr16	90110573	90110808	ENSG00000261172.1|AC133919.2|lncRNA|chr16:90110573:90110808:-	0	-
#Deleted in new
chr16	90111371	90111437	ENSG00000260528.4|FAM157C|lncRNA|chr16:90111371:90111437:+	0	+
#Deleted in new
chr16	90116199	90116562	ENSG00000261172.1|AC133919.2|lncRNA|chr16:90116199:90116562:-	0	-
#Deleted in new
chr16	90116287	90116483	ENSG00000260528.4|FAM157C|lncRNA|chr16:90116287:90116483:+	0	+
#Deleted in new
chr16	90125969	90126022	ENSG00000261172.1|AC133919.2|lncRNA|chr16:90125969:90126022:-	0	-
#Deleted in new
chr16	90125969	90126088	ENSG00000261172.1|AC133919.2|lncRNA|chr16:90125969:90126088:-	0	-
#Deleted in new
chr16	90129796	90129928	ENSG00000260528.4|FAM157C|lncRNA|chr16:90129796:90129928:+	0	+
#Deleted in new
chr16	90133218	90133434	ENSG00000260528.4|FAM157C|lncRNA|chr16:90133218:90133434:+	0	+
#Deleted in new
chr16	90157931	90158055	ENSG00000260528.4|FAM157C|lncRNA|chr16:90157931:90158055:+	0	+
#Deleted in new
chr16	90158171	90158588	ENSG00000260528.4|FAM157C|lncRNA|chr16:90158171:90158588:+	0	+
#Deleted in new
chr16	90158391	90158588	ENSG00000260528.4|FAM157C|lncRNA|chr16:90158391:90158588:+	0	+
#Deleted in new
chr16	90159432	90159497	ENSG00000260528.4|FAM157C|lncRNA|chr16:90159432:90159497:+	0	+
#Deleted in new
chr16	90159432	90159576	ENSG00000260528.4|FAM157C|lncRNA|chr16:90159432:90159576:+	0	+
#Deleted in new
chr16	90161683	90162369	ENSG00000260528.4|FAM157C|lncRNA|chr16:90161683:90162369:+	0	+
#Deleted in new
chr16	90162596	90162654	ENSG00000260528.4|FAM157C|lncRNA|chr16:90162596:90162654:+	0	+
#Deleted in new
chr16	90162747	90162978	ENSG00000260528.4|FAM157C|lncRNA|chr16:90162747:90162978:+	0	+
#Deleted in new
chr16	90163763	90163958	ENSG00000260528.4|FAM157C|lncRNA|chr16:90163763:90163958:+	0	+
#Deleted in new
chr16	90167990	90168225	ENSG00000261172.1|AC133919.2|lncRNA|chr16:90167990:90168225:-	0	-
#Deleted in new
chr16	90177437	90177606	ENSG00000260528.4|FAM157C|lncRNA|chr16:90177437:90177606:+	0	+
#Deleted in new
chr16	90214681	90214831	ENSG00000260923.6|LINC02193|lncRNA|chr16:90214681:90214831:+	0	+
#Deleted in new
chr16	90214772	90214831	ENSG00000260923.6|LINC02193|lncRNA|chr16:90214772:90214831:+	0	+
#Deleted in new
chr16	90215292	90215362	ENSG00000260923.6|LINC02193|lncRNA|chr16:90215292:90215362:+	0	+
#Deleted in new
chr16	90215292	90216935	ENSG00000260923.6|LINC02193|lncRNA|chr16:90215292:90216935:+	0	+
#Deleted in new
chr16	90215825	90216198	ENSG00000260923.6|LINC02193|lncRNA|chr16:90215825:90216198:+	0	+
#Deleted in new
chr16	90215871	90216198	ENSG00000260923.6|LINC02193|lncRNA|chr16:90215871:90216198:+	0	+
#Deleted in new
chr16	90216027	90216198	ENSG00000260923.6|LINC02193|lncRNA|chr16:90216027:90216198:+	0	+
#Deleted in new
chr16	90219258	90219464	ENSG00000260923.6|LINC02193|lncRNA|chr16:90219258:90219464:+	0	+
#Deleted in new
chr16	90221447	90221997	ENSG00000260923.6|LINC02193|lncRNA|chr16:90221447:90221997:+	0	+
#Deleted in new
chr16	90222243	90222292	ENSG00000260923.6|LINC02193|lncRNA|chr16:90222243:90222292:+	0	+
#Deleted in new
chr16	90222385	90222666	ENSG00000260923.6|LINC02193|lncRNA|chr16:90222385:90222666:+	0	+
#Deleted in new
chr16	90222388	90222508	ENSG00000260923.6|LINC02193|lncRNA|chr16:90222388:90222508:+	0	+
#Deleted in new
chr16	90222388	90222678	ENSG00000260923.6|LINC02193|lncRNA|chr16:90222388:90222678:+	0	+
#Deleted in new
chr16	903228	904038	ENSG00000260316.2|AL008727.1|lncRNA|chr16:903228:904038:-	0	-
#Deleted in new
chr16	904918	905224	ENSG00000260316.2|AL008727.1|lncRNA|chr16:904918:905224:-	0	-
#Deleted in new
chr1	69055897	69056047	ENSG00000223883.1|LINC01707|lncRNA|chr1:69055897:69056047:+	0	+
#Deleted in new
chr16	9070852	9070983	ENSG00000261392.1|AC087190.3|lncRNA|chr16:9070852:9070983:+	0	+
#Deleted in new
chr16	9071890	9072412	ENSG00000261392.1|AC087190.3|lncRNA|chr16:9071890:9072412:+	0	+
#Deleted in new
chr1	69085179	69085298	ENSG00000223883.1|LINC01707|lncRNA|chr1:69085179:69085298:+	0	+
#Deleted in new
chr1	69088514	69088562	ENSG00000223883.1|LINC01707|lncRNA|chr1:69088514:69088562:+	0	+
#Deleted in new
chr16	9106510	9107174	ENSG00000260349.1|AC087190.2|lncRNA|chr16:9106510:9107174:-	0	-
#Deleted in new
chr1	69184785	69185003	ENSG00000223883.1|LINC01707|lncRNA|chr1:69184785:69185003:+	0	+
#Deleted in new
chr16	921032	921167	ENSG00000260439.1|LMF1-AS1|lncRNA|chr16:921032:921167:+	0	+
#Deleted in new
chr16	921072	921167	ENSG00000260439.1|LMF1-AS1|lncRNA|chr16:921072:921167:+	0	+
#Deleted in new
chr1	69243371	69243596	ENSG00000235446.1|AL512271.1|lncRNA|chr1:69243371:69243596:-	0	-
#Deleted in new
chr1	69249214	69249423	ENSG00000235446.1|AL512271.1|lncRNA|chr1:69249214:69249423:-	0	-
#Deleted in new
chr16	931641	931793	ENSG00000103227.18|LMF1|pc|chr16:931641:931793:-	0	-
#Deleted in new
chr16	933100	933255	ENSG00000260439.1|LMF1-AS1|lncRNA|chr16:933100:933255:+	0	+
#Partially deleted in new
chr16	933337	934266	ENSG00000260439.1|LMF1-AS1|lncRNA|chr16:933337:934266:+	0	+
#Partially deleted in new
chr16	933337	934495	ENSG00000260439.1|LMF1-AS1|lncRNA|chr16:933337:934495:+	0	+
#Deleted in new
chr16	933990	934145	ENSG00000103227.18|LMF1|pc|chr16:933990:934145:-	0	-
#Deleted in new
chr16	9355587	9355780	ENSG00000261617.1|LINC02177|lncRNA|chr16:9355587:9355780:+	0	+
#Deleted in new
chr16	9401729	9401783	ENSG00000261617.1|LINC02177|lncRNA|chr16:9401729:9401783:+	0	+
#Deleted in new
chr1	69435002	69435409	ENSG00000229639.1|LINC01758|lncRNA|chr1:69435002:69435409:+	0	+
#Deleted in new
chr16	9442503	9442594	ENSG00000261397.1|LINC01177|lncRNA|chr16:9442503:9442594:-	0	-
#Deleted in new
chr16	9443984	9444152	ENSG00000261397.1|LINC01177|lncRNA|chr16:9443984:9444152:-	0	-
#Deleted in new
chr16	9444932	9444985	ENSG00000261397.1|LINC01177|lncRNA|chr16:9444932:9444985:-	0	-
#Deleted in new
chr16	9446009	9446068	ENSG00000261075.1|LINC01195|lncRNA|chr16:9446009:9446068:-	0	-
#Deleted in new
chr16	9446170	9446229	ENSG00000261075.1|LINC01195|lncRNA|chr16:9446170:9446229:-	0	-
#Deleted in new
chr16	947399	947644	ENSG00000103227.18|LMF1|pc|chr16:947399:947644:-	0	-
#Deleted in new
chr16	952574	952642	ENSG00000103227.18|LMF1|pc|chr16:952574:952642:-	0	-
#Deleted in new
chr16	9542044	9542173	ENSG00000283003.1|AC007221.2|lncRNA|chr16:9542044:9542173:+	0	+
#Deleted in new
chr16	9566437	9566590	ENSG00000283003.1|AC007221.2|lncRNA|chr16:9566437:9566590:+	0	+
#Deleted in new
chr16	964046	964122	ENSG00000103227.18|LMF1|pc|chr16:964046:964122:-	0	-
#Deleted in new
chr16	9676673	9676843	ENSG00000260362.1|AC007218.1|lncRNA|chr16:9676673:9676843:-	0	-
#Deleted in new
chr16	968374	969012	ENSG00000276931.1|AC009041.4|lncRNA|chr16:968374:969012:-	0	-
#Deleted in new
chr16	979024	979110	ENSG00000260807.6|AC009041.2|lncRNA|chr16:979024:979110:-	0	-
#Partially deleted in new
chr16	979024	980913	ENSG00000260807.6|AC009041.2|lncRNA|chr16:979024:980913:-	0	-
#Partially deleted in new
chr16	979139	981590	ENSG00000260807.6|AC009041.2|lncRNA|chr16:979139:981590:-	0	-
#Partially deleted in new
chr16	979139	981596	ENSG00000260807.6|AC009041.2|lncRNA|chr16:979139:981596:-	0	-
#Deleted in new
chr16	979600	979758	ENSG00000260807.6|AC009041.2|lncRNA|chr16:979600:979758:-	0	-
#Deleted in new
chr16	979600	979763	ENSG00000260807.6|AC009041.2|lncRNA|chr16:979600:979763:-	0	-
#Partially deleted in new
chr16	981144	981318	ENSG00000103227.18|LMF1|pc|chr16:981144:981318:-	0	-
#Deleted in new
chr16	996318	996616	ENSG00000260496.3|AC009041.1|lncRNA|chr16:996318:996616:-	0	-
#Deleted in new
chr16	996468	996616	ENSG00000260496.3|AC009041.1|lncRNA|chr16:996468:996616:-	0	-
#Deleted in new
chr1	70013981	70014144	ENSG00000237919.5|AL158840.1|lncRNA|chr1:70013981:70014144:-	0	-
#Deleted in new
chr1	70132202	70132288	ENSG00000033122.18|LRRC7|pc|chr1:70132202:70132288:+	0	+
#Deleted in new
chr1	70147026	70147077	ENSG00000033122.18|LRRC7|pc|chr1:70147026:70147077:+	0	+
#Deleted in new
chr1	70147026	70147196	ENSG00000033122.18|LRRC7|pc|chr1:70147026:70147196:+	0	+
#Deleted in new
chr1	70147120	70147195	ENSG00000033122.18|LRRC7|pc|chr1:70147120:70147195:+	0	+
#Deleted in new
chr1	70218588	70218844	ENSG00000228988.1|AL353771.1|lncRNA|chr1:70218588:70218844:-	0	-
#Deleted in new
chr1	70220822	70221023	ENSG00000228988.1|AL353771.1|lncRNA|chr1:70220822:70221023:-	0	-
#Deleted in new
chr1	70221369	70221400	ENSG00000116754.13|SRSF11|pc|chr1:70221369:70221400:+	0	+
#Deleted in new
chr1	70247116	70247149	ENSG00000116754.13|SRSF11|pc|chr1:70247116:70247149:+	0	+
#Partially deleted in new
chr1	70248393	70250503	ENSG00000116754.13|SRSF11|pc|chr1:70248393:70250503:+	0	+
#Deleted in new
chr1	70359561	70359995	ENSG00000226088.1|AL158839.1|lncRNA|chr1:70359561:70359995:-	0	-
#Deleted in new
chr1	70360296	70360437	ENSG00000226088.1|AL158839.1|lncRNA|chr1:70360296:70360437:-	0	-
#Deleted in new
chr1	70366145	70366237	ENSG00000197568.13|HHLA3|pc|chr1:70366145:70366237:+	0	+
#Deleted in new
chr1	70366145	70366328	ENSG00000197568.13|HHLA3|pc|chr1:70366145:70366328:+	0	+
#Deleted in new
chr1	70366443	70366537	ENSG00000197568.13|HHLA3|pc|chr1:70366443:70366537:+	0	+
#Deleted in new
chr1	70366932	70366984	ENSG00000197568.13|HHLA3|pc|chr1:70366932:70366984:+	0	+
#Deleted in new
chr1	70367616	70367723	ENSG00000197568.13|HHLA3|pc|chr1:70367616:70367723:+	0	+
#Deleted in new
chr1	70367616	70367911	ENSG00000197568.13|HHLA3|pc|chr1:70367616:70367911:+	0	+
#Deleted in new
chr1	70367616	70368021	ENSG00000197568.13|HHLA3|pc|chr1:70367616:70368021:+	0	+
#Deleted in new
chr1	70367616	70368023	ENSG00000197568.13|HHLA3|pc|chr1:70367616:70368023:+	0	+
#Deleted in new
chr1	70385257	70385339	ENSG00000197568.13|HHLA3|pc|chr1:70385257:70385339:+	0	+
#Deleted in new
chr1	70445070	70445536	ENSG00000271992.1|AL354872.2|lncRNA|chr1:70445070:70445536:+	0	+
#Deleted in new
chr1	70706452	70706531	ENSG00000229051.1|LINC01788|lncRNA|chr1:70706452:70706531:+	0	+
#Deleted in new
chr1	70707727	70707981	ENSG00000229051.1|LINC01788|lncRNA|chr1:70707727:70707981:+	0	+
#Deleted in new
chr1	70708720	70708770	ENSG00000229051.1|LINC01788|lncRNA|chr1:70708720:70708770:+	0	+
#Deleted in new
chr1	70712056	70712131	ENSG00000229051.1|LINC01788|lncRNA|chr1:70712056:70712131:+	0	+
#Deleted in new
chr1	70713128	70713307	ENSG00000229051.1|LINC01788|lncRNA|chr1:70713128:70713307:+	0	+
#Deleted in new
chr1	70715932	70716276	ENSG00000226208.1|AL513285.1|lncRNA|chr1:70715932:70716276:-	0	-
#Deleted in new
chr1	70720201	70720289	ENSG00000226208.1|AL513285.1|lncRNA|chr1:70720201:70720289:-	0	-
#Deleted in new
chr1	70777529	70777695	ENSG00000229051.1|LINC01788|lncRNA|chr1:70777529:70777695:+	0	+
#Deleted in new
chr1	70852352	70852859	ENSG00000050628.20|PTGER3|pc|chr1:70852352:70852859:-	0	-
#Deleted in new
chr1	70852352	70852868	ENSG00000050628.20|PTGER3|pc|chr1:70852352:70852868:-	0	-
#Deleted in new
chr1	70852441	70852859	ENSG00000050628.20|PTGER3|pc|chr1:70852441:70852859:-	0	-
#Deleted in new
chr1	70852572	70852859	ENSG00000050628.20|PTGER3|pc|chr1:70852572:70852859:-	0	-
#Deleted in new
chr1	70862304	70862397	ENSG00000050628.20|PTGER3|pc|chr1:70862304:70862397:-	0	-
#Deleted in new
chr1	70869243	70869319	ENSG00000050628.20|PTGER3|pc|chr1:70869243:70869319:-	0	-
#Deleted in new
chr1	70947378	70947475	ENSG00000235782.1|AL031429.1|lncRNA|chr1:70947378:70947475:+	0	+
#Deleted in new
chr1	70950734	70950793	ENSG00000235782.1|AL031429.1|lncRNA|chr1:70950734:70950793:+	0	+
#Deleted in new
chr1	70950900	70951493	ENSG00000235782.1|AL031429.1|lncRNA|chr1:70950900:70951493:+	0	+
#Deleted in new
chr1	70953762	70953789	ENSG00000050628.20|PTGER3|pc|chr1:70953762:70953789:-	0	-
#Deleted in new
chr1	70997158	70997201	ENSG00000050628.20|PTGER3|pc|chr1:70997158:70997201:-	0	-
#Deleted in new
chr1	71002179	71002260	ENSG00000050628.20|PTGER3|pc|chr1:71002179:71002260:-	0	-
#Deleted in new
chr17	10039741	10039795	ENSG00000007237.18|GAS7|pc|chr17:10039741:10039795:-	0	-
#Deleted in new
chr17	102057	102273	ENSG00000280136.2|AC240565.1|lncRNA|chr17:102057:102273:-	0	-
#Deleted in new
chr17	10291819	10291913	ENSG00000273388.1|AC005291.2|lncRNA|chr17:10291819:10291913:+	0	+
#Deleted in new
chr17	10317497	10317926	ENSG00000273388.1|AC005291.2|lncRNA|chr17:10317497:10317926:+	0	+
#Deleted in new
chr17	10324842	10324967	ENSG00000264067.1|AC005291.1|lncRNA|chr17:10324842:10324967:+	0	+
#Deleted in new
chr1	71048854	71048988	ENSG00000235079.1|ZRANB2-AS1|lncRNA|chr1:71048854:71048988:+	0	+
#Deleted in new
chr17	105559	105691	ENSG00000280136.2|AC240565.1|lncRNA|chr17:105559:105691:-	0	-
#Deleted in new
chr1	71058322	71058736	ENSG00000235079.1|ZRANB2-AS1|lncRNA|chr1:71058322:71058736:+	0	+
#Deleted in new
chr17	10588388	10588423	ENSG00000272975.1|MYHAS|lncRNA|chr17:10588388:10588423:+	0	+
#Deleted in new
chr17	10590642	10590775	ENSG00000272975.1|MYHAS|lncRNA|chr17:10590642:10590775:+	0	+
#Deleted in new
chr17	10598072	10598222	ENSG00000272975.1|MYHAS|lncRNA|chr17:10598072:10598222:+	0	+
#Deleted in new
chr17	10611901	10611945	ENSG00000214970.8|AC005323.1|lncRNA|chr17:10611901:10611945:+	0	+
#Deleted in new
chr17	10611907	10611945	ENSG00000214970.8|AC005323.1|lncRNA|chr17:10611907:10611945:+	0	+
#Deleted in new
chr17	10612458	10612571	ENSG00000214970.8|AC005323.1|lncRNA|chr17:10612458:10612571:+	0	+
#Deleted in new
chr17	10612458	10612574	ENSG00000214970.8|AC005323.1|lncRNA|chr17:10612458:10612574:+	0	+
#Deleted in new
chr17	10612458	10612574	ENSG00000272975.1|MYHAS|lncRNA|chr17:10612458:10612574:+	0	+
#Deleted in new
chr17	10621574	10621749	ENSG00000214970.8|AC005323.1|lncRNA|chr17:10621574:10621749:+	0	+
#Split in new
chr17	10672473	10681253	ENSG00000133028.10|SCO1|pc|chr17:10672473:10681253:-	0	-
#Deleted in new
chr17	10699014	10699267	ENSG00000187824.8|TMEM220|pc|chr17:10699014:10699267:-	0	-
#Deleted in new
chr17	10724454	10724502	ENSG00000187824.8|TMEM220|pc|chr17:10724454:10724502:-	0	-
#Deleted in new
chr17	10733838	10733907	ENSG00000263400.6|TMEM220-AS1|lncRNA|chr17:10733838:10733907:+	0	+
#Deleted in new
chr17	10736601	10736638	ENSG00000263400.6|TMEM220-AS1|lncRNA|chr17:10736601:10736638:+	0	+
#Deleted in new
chr17	10736604	10736638	ENSG00000263400.6|TMEM220-AS1|lncRNA|chr17:10736604:10736638:+	0	+
#Deleted in new
chr17	10738572	10738882	ENSG00000263400.6|TMEM220-AS1|lncRNA|chr17:10738572:10738882:+	0	+
#Deleted in new
chr17	10766678	10766856	ENSG00000263400.6|TMEM220-AS1|lncRNA|chr17:10766678:10766856:+	0	+
#Deleted in new
chr17	10766678	10766874	ENSG00000263400.6|TMEM220-AS1|lncRNA|chr17:10766678:10766874:+	0	+
#Deleted in new
chr17	10766678	10767006	ENSG00000263400.6|TMEM220-AS1|lncRNA|chr17:10766678:10767006:+	0	+
#Deleted in new
chr17	10766678	10767052	ENSG00000263400.6|TMEM220-AS1|lncRNA|chr17:10766678:10767052:+	0	+
#Partially deleted in new
chr17	10767864	10768030	ENSG00000263400.6|TMEM220-AS1|lncRNA|chr17:10767864:10768030:+	0	+
#Partially deleted in new
chr17	10767864	10768044	ENSG00000263400.6|TMEM220-AS1|lncRNA|chr17:10767864:10768044:+	0	+
#Deleted in new
chr17	10793682	10794184	ENSG00000266114.1|AC015908.4|lncRNA|chr17:10793682:10794184:+	0	+
#Deleted in new
chr17	10814898	10815164	ENSG00000263400.6|TMEM220-AS1|lncRNA|chr17:10814898:10815164:+	0	+
#Partially deleted in new
chr17	10821900	10822243	ENSG00000279542.1|AC015908.5|lncRNA|chr17:10821900:10822243:-	0	-
#Deleted in new
chr17	10849540	10849558	ENSG00000263508.5|AC015908.2|lncRNA|chr17:10849540:10849558:+	0	+
#Deleted in new
chr1	71093129	71093251	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71093129:71093251:+	0	+
#Deleted in new
chr1	71093132	71093251	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71093132:71093251:+	0	+
#Deleted in new
chr17	11288204	11290811	ENSG00000264727.1|AC005725.1|lncRNA|chr17:11288204:11290811:+	0	+
#Deleted in new
chr17	11630153	11630514	ENSG00000007174.17|DNAH9|pc|chr17:11630153:11630514:+	0	+
#Deleted in new
chr17	1182266	1182311	ENSG00000235361.1|AC016292.1|lncRNA|chr17:1182266:1182311:+	0	+
#Deleted in new
chr17	118382	118578	ENSG00000280136.2|AC240565.1|lncRNA|chr17:118382:118578:-	0	-
#Deleted in new
chr17	11853191	11853245	ENSG00000007174.17|DNAH9|pc|chr17:11853191:11853245:+	0	+
#Deleted in new
chr17	11875721	11875828	ENSG00000263684.1|AC005209.1|lncRNA|chr17:11875721:11875828:-	0	-
#Partially deleted in new
chr17	11882901	11883172	ENSG00000007174.17|DNAH9|pc|chr17:11882901:11883172:+	0	+
#Partially deleted in new
chr17	11882903	11883172	ENSG00000007174.17|DNAH9|pc|chr17:11882903:11883172:+	0	+
#Deleted in new
chr1	71193674	71193728	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71193674:71193728:+	0	+
#Deleted in new
chr17	11953888	11954004	ENSG00000266368.1|AC005410.2|lncRNA|chr17:11953888:11954004:-	0	-
#Deleted in new
chr17	11993501	11993654	ENSG00000154957.13|ZNF18|pc|chr17:11993501:11993654:-	0	-
#Deleted in new
chr17	11995557	11995679	ENSG00000154957.13|ZNF18|pc|chr17:11995557:11995679:-	0	-
#Partially deleted in new
chr17	11996809	11997110	ENSG00000154957.13|ZNF18|pc|chr17:11996809:11997110:-	0	-
#Deleted in new
chr17	12026886	12026970	ENSG00000065559.14|MAP2K4|pc|chr17:12026886:12026970:+	0	+
#Deleted in new
chr17	12201599	12201667	ENSG00000265400.1|AC005244.2|lncRNA|chr17:12201599:12201667:+	0	+
#Deleted in new
chr17	12211121	12211265	ENSG00000265400.1|AC005244.2|lncRNA|chr17:12211121:12211265:+	0	+
#Deleted in new
chr17	12213869	12214057	ENSG00000265400.1|AC005244.2|lncRNA|chr17:12213869:12214057:+	0	+
#Deleted in new
chr17	12214949	12215267	ENSG00000265400.1|AC005244.2|lncRNA|chr17:12214949:12215267:+	0	+
#Deleted in new
chr1	71237129	71237160	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71237129:71237160:+	0	+
#Deleted in new
chr1	71237129	71237195	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71237129:71237195:+	0	+
#Deleted in new
chr1	71237129	71237198	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71237129:71237198:+	0	+
#Deleted in new
chr1	71237129	71237386	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71237129:71237386:+	0	+
#Deleted in new
chr1	71237129	71237723	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71237129:71237723:+	0	+
#Deleted in new
chr17	1241938	1242191	ENSG00000262213.1|AC144836.1|lncRNA|chr17:1241938:1242191:-	0	-
#Deleted in new
chr1	71250998	71251058	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71250998:71251058:+	0	+
#Deleted in new
chr1	71251000	71251058	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71251000:71251058:+	0	+
#Deleted in new
chr1	71251495	71251624	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71251495:71251624:+	0	+
#Deleted in new
chr1	71251661	71252119	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71251661:71252119:+	0	+
#Deleted in new
chr17	12584559	12584721	ENSG00000179136.6|LINC00670|lncRNA|chr17:12584559:12584721:+	0	+
#Deleted in new
chr17	12590440	12590748	ENSG00000179136.6|LINC00670|lncRNA|chr17:12590440:12590748:+	0	+
#Deleted in new
chr17	12642397	12642854	ENSG00000179136.6|LINC00670|lncRNA|chr17:12642397:12642854:+	0	+
#Deleted in new
chr1	71267904	71268230	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71267904:71268230:+	0	+
#Deleted in new
chr17	12720288	12720461	ENSG00000141052.17|MYOCD|pc|chr17:12720288:12720461:+	0	+
#Deleted in new
chr17	12894939	12894979	ENSG00000006740.16|ARHGAP44|pc|chr17:12894939:12894979:+	0	+
#Deleted in new
chr17	12980906	12981047	ENSG00000006740.16|ARHGAP44|pc|chr17:12980906:12981047:+	0	+
#Deleted in new
chr17	12982612	12983002	ENSG00000277621.1|AC005277.2|lncRNA|chr17:12982612:12983002:-	0	-
#Partially deleted in new
chr17	13000155	13000897	ENSG00000006744.18|ELAC2|pc|chr17:13000155:13000897:-	0	-
#Partially deleted in new
chr17	13003478	13004108	ENSG00000006744.18|ELAC2|pc|chr17:13003478:13004108:-	0	-
#Partially deleted in new
chr17	13005920	13006546	ENSG00000006744.18|ELAC2|pc|chr17:13005920:13006546:-	0	-
#Deleted in new
chr1	71304358	71304415	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71304358:71304415:+	0	+
#Deleted in new
chr17	13095907	13096034	ENSG00000273098.1|AC005303.1|lncRNA|chr17:13095907:13096034:+	0	+
#Partially deleted in new
chr17	13100315	13100928	ENSG00000273098.1|AC005303.1|lncRNA|chr17:13100315:13100928:+	0	+
#Deleted in new
chr17	13299818	13299987	ENSG00000234634.1|LINC02093|lncRNA|chr17:13299818:13299987:-	0	-
#Deleted in new
chr17	13301118	13301239	ENSG00000234634.1|LINC02093|lncRNA|chr17:13301118:13301239:-	0	-
#Deleted in new
chr17	1352069	1352255	ENSG00000280408.1|AC032044.2|lncRNA|chr17:1352069:1352255:+	0	+
#Deleted in new
chr17	13555942	13556043	ENSG00000153976.2|HS3ST3A1|pc|chr17:13555942:13556043:-	0	-
#Deleted in new
chr1	71368054	71368088	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71368054:71368088:+	0	+
#Deleted in new
chr17	1369708	1369741	ENSG00000108953.16|YWHAE|pc|chr17:1369708:1369741:-	0	-
#Deleted in new
chr17	13756477	13756729	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:13756477:13756729:-	0	-
#Deleted in new
chr17	13777306	13777349	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:13777306:13777349:-	0	-
#Deleted in new
chr17	13790268	13790313	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:13790268:13790313:-	0	-
#Partially deleted in new
chr17	13790268	13792550	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:13790268:13792550:-	0	-
#Deleted in new
chr17	13892724	13892839	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:13892724:13892839:-	0	-
#Partially deleted in new
chr17	13898608	13898732	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:13898608:13898732:-	0	-
#Deleted in new
chr17	13909230	13911212	ENSG00000265494.1|AC005304.2|lncRNA|chr17:13909230:13911212:+	0	+
#Deleted in new
chr17	13966878	13966952	ENSG00000266744.1|AC005304.3|lncRNA|chr17:13966878:13966952:-	0	-
#Deleted in new
chr1	71401721	71401879	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71401721:71401879:+	0	+
#Deleted in new
chr1	71401722	71401879	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71401722:71401879:+	0	+
#Deleted in new
chr1	71401846	71401879	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71401846:71401879:+	0	+
#Deleted in new
chr1	71402098	71402571	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71402098:71402571:+	0	+
#Deleted in new
chr1	71402495	71402571	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71402495:71402571:+	0	+
#Deleted in new
chr17	14028740	14030657	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:14028740:14030657:-	0	-
#Deleted in new
chr17	14029291	14030571	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:14029291:14030571:-	0	-
#Deleted in new
chr17	14033850	14034416	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:14033850:14034416:-	0	-
#Deleted in new
chr17	14033939	14034416	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:14033939:14034416:-	0	-
#Deleted in new
chr17	14069271	14069458	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:14069271:14069458:-	0	-
#Partially deleted in new
chr17	14069271	14069479	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:14069271:14069479:-	0	-
#Partially deleted in new
chr17	14069271	14069495	ENSG00000236088.9|COX10-AS1|lncRNA|chr17:14069271:14069495:-	0	-
#Deleted in new
chr17	14210487	14210565	ENSG00000231595.1|AC005224.1|lncRNA|chr17:14210487:14210565:+	0	+
#Deleted in new
chr17	14211287	14211508	ENSG00000231595.1|AC005224.1|lncRNA|chr17:14211287:14211508:+	0	+
#Deleted in new
chr17	14235672	14236011	ENSG00000223510.6|CDRT15|pc|chr17:14235672:14236011:-	0	-
#Deleted in new
chr17	14236281	14236430	ENSG00000223510.6|CDRT15|pc|chr17:14236281:14236430:-	0	-
#Deleted in new
chr17	14236571	14236849	ENSG00000223510.6|CDRT15|pc|chr17:14236571:14236849:-	0	-
#Deleted in new
chr17	14236695	14236862	ENSG00000223510.6|CDRT15|pc|chr17:14236695:14236862:-	0	-
#Partially deleted in new
chr17	1424472	1424917	ENSG00000262777.1|AC032044.1|lncRNA|chr17:1424472:1424917:+	0	+
#Deleted in new
chr17	1424775	1424917	ENSG00000262777.1|AC032044.1|lncRNA|chr17:1424775:1424917:+	0	+
#Deleted in new
chr17	1426238	1426363	ENSG00000262777.1|AC032044.1|lncRNA|chr17:1426238:1426363:+	0	+
#Deleted in new
chr17	1426304	1426484	ENSG00000262777.1|AC032044.1|lncRNA|chr17:1426304:1426484:+	0	+
#Deleted in new
chr17	14377283	14377421	ENSG00000230647.1|AC022816.1|lncRNA|chr17:14377283:14377421:+	0	+
#Deleted in new
chr17	14397061	14397172	ENSG00000230647.1|AC022816.1|lncRNA|chr17:14397061:14397172:+	0	+
#Deleted in new
chr1	71439725	71439838	ENSG00000172260.14|NEGR1|pc|chr1:71439725:71439838:-	0	-
#Deleted in new
chr17	14420656	14421026	ENSG00000230647.1|AC022816.1|lncRNA|chr17:14420656:14421026:+	0	+
#Deleted in new
chr1	71461558	71461817	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71461558:71461817:+	0	+
#Deleted in new
chr1	71461560	71461817	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71461560:71461817:+	0	+
#Deleted in new
chr17	1462952	1463162	ENSG00000167193.7|CRK|pc|chr17:1462952:1463162:-	0	-
#Deleted in new
chr1	71463330	71463380	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71463330:71463380:+	0	+
#Deleted in new
chr1	71463330	71463501	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71463330:71463501:+	0	+
#Deleted in new
chr1	71463330	71463525	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71463330:71463525:+	0	+
#Deleted in new
chr1	71463408	71463525	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71463408:71463525:+	0	+
#Deleted in new
chr1	71463448	71463525	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71463448:71463525:+	0	+
#Deleted in new
chr1	71472581	71472641	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71472581:71472641:+	0	+
#Deleted in new
chr17	14767582	14770246	ENSG00000205325.1|AC005863.1|lncRNA|chr17:14767582:14770246:-	0	-
#Deleted in new
chr17	14834637	14834942	ENSG00000238212.2|LINC02096|lncRNA|chr17:14834637:14834942:+	0	+
#Deleted in new
chr17	14839968	14840046	ENSG00000238212.2|LINC02096|lncRNA|chr17:14839968:14840046:+	0	+
#Deleted in new
chr1	71489707	71489903	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71489707:71489903:+	0	+
#Deleted in new
chr1	71489707	71489919	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71489707:71489919:+	0	+
#Deleted in new
chr1	71489707	71489976	ENSG00000229956.10|ZRANB2-AS2|lncRNA|chr1:71489707:71489976:+	0	+
#Partially deleted in new
chr17	1506979	1507705	ENSG00000132376.19|INPP5K|pc|chr17:1506979:1507705:-	0	-
#Deleted in new
chr17	15105236	15105543	ENSG00000265163.1|CDRT8|lncRNA|chr17:15105236:15105543:-	0	-
#Deleted in new
chr17	15106027	15106187	ENSG00000265163.1|CDRT8|lncRNA|chr17:15106027:15106187:-	0	-
#Deleted in new
chr17	15276561	15276659	ENSG00000237377.2|AC005703.2|lncRNA|chr17:15276561:15276659:-	0	-
#Deleted in new
chr17	15277605	15277711	ENSG00000237377.2|AC005703.2|lncRNA|chr17:15277605:15277711:-	0	-
#Deleted in new
chr17	15279338	15279477	ENSG00000237377.2|AC005703.2|lncRNA|chr17:15279338:15279477:-	0	-
#Deleted in new
chr17	15338445	15338556	ENSG00000125409.12|TEKT3|pc|chr17:15338445:15338556:-	0	-
#Deleted in new
chr17	15340421	15340519	ENSG00000125409.12|TEKT3|pc|chr17:15340421:15340519:-	0	-
#Deleted in new
chr17	1535784	1535841	ENSG00000174238.14|PITPNA|pc|chr17:1535784:1535841:-	0	-
#Deleted in new
chr17	15365322	15365877	ENSG00000279567.1|AC005703.5|lncRNA|chr17:15365322:15365877:+	0	+
#Deleted in new
chr17	15381977	15382121	ENSG00000266667.1|AC005703.4|lncRNA|chr17:15381977:15382121:-	0	-
#Deleted in new
chr17	15452512	15452620	ENSG00000239704.10|CDRT4|pc|chr17:15452512:15452620:-	0	-
#Deleted in new
chr17	15453003	15453085	ENSG00000239704.10|CDRT4|pc|chr17:15453003:15453085:-	0	-
#Partially deleted in new
chr17	15503097	15503232	ENSG00000259024.6|TVP23C-CDRT4|pc|chr17:15503097:15503232:-	0	-
#Partially deleted in new
chr17	15503097	15503608	ENSG00000239704.10|CDRT4|pc|chr17:15503097:15503608:-	0	-
#Deleted in new
chr17	15530772	15531089	ENSG00000266538.1|AC005838.2|lncRNA|chr17:15530772:15531089:-	0	-
#Deleted in new
chr17	15538980	15539575	ENSG00000175106.16|TVP23C|pc|chr17:15538980:15539575:-	0	-
#Deleted in new
chr17	15623480	15623632	ENSG00000251537.4|AC005324.3|pc|chr17:15623480:15623632:-	0	-
#Deleted in new
chr17	15643189	15643275	ENSG00000221926.11|TRIM16|pc|chr17:15643189:15643275:-	0	-
#Deleted in new
chr17	15654389	15654434	ENSG00000221926.11|TRIM16|pc|chr17:15654389:15654434:-	0	-
#Deleted in new
chr17	15654443	15654489	ENSG00000266261.1|AC005324.5|lncRNA|chr17:15654443:15654489:+	0	+
#Deleted in new
chr17	15680864	15680918	ENSG00000221926.11|TRIM16|pc|chr17:15680864:15680918:-	0	-
#Deleted in new
chr17	15680864	15680930	ENSG00000221926.11|TRIM16|pc|chr17:15680864:15680930:-	0	-
#Deleted in new
chr17	15680864	15680953	ENSG00000221926.11|TRIM16|pc|chr17:15680864:15680953:-	0	-
#Deleted in new
chr17	15681050	15681222	ENSG00000221926.11|TRIM16|pc|chr17:15681050:15681222:-	0	-
#Deleted in new
chr17	15681087	15681222	ENSG00000221926.11|TRIM16|pc|chr17:15681087:15681222:-	0	-
#Deleted in new
chr17	15682853	15682879	ENSG00000221926.11|TRIM16|pc|chr17:15682853:15682879:-	0	-
#Deleted in new
chr17	15682853	15682951	ENSG00000221926.11|TRIM16|pc|chr17:15682853:15682951:-	0	-
#Deleted in new
chr17	15682853	15682964	ENSG00000221926.11|TRIM16|pc|chr17:15682853:15682964:-	0	-
#Deleted in new
chr17	15682860	15682951	ENSG00000221926.11|TRIM16|pc|chr17:15682860:15682951:-	0	-
#Deleted in new
chr17	15683035	15683157	ENSG00000221926.11|TRIM16|pc|chr17:15683035:15683157:-	0	-
#Deleted in new
chr17	15683035	15683371	ENSG00000221926.11|TRIM16|pc|chr17:15683035:15683371:-	0	-
#Deleted in new
chr17	15683035	15683376	ENSG00000221926.11|TRIM16|pc|chr17:15683035:15683376:-	0	-
#Deleted in new
chr17	15683035	15684299	ENSG00000221926.11|TRIM16|pc|chr17:15683035:15684299:-	0	-
#Deleted in new
chr17	15684195	15684266	ENSG00000221926.11|TRIM16|pc|chr17:15684195:15684266:-	0	-
#Deleted in new
chr17	15684195	15684273	ENSG00000221926.11|TRIM16|pc|chr17:15684195:15684273:-	0	-
#Deleted in new
chr17	15684195	15684275	ENSG00000221926.11|TRIM16|pc|chr17:15684195:15684275:-	0	-
#Deleted in new
chr17	15684195	15684283	ENSG00000221926.11|TRIM16|pc|chr17:15684195:15684283:-	0	-
#Deleted in new
chr17	15684195	15684297	ENSG00000221926.11|TRIM16|pc|chr17:15684195:15684297:-	0	-
#Deleted in new
chr17	15684195	15684298	ENSG00000221926.11|TRIM16|pc|chr17:15684195:15684298:-	0	-
#Deleted in new
chr17	15684195	15684299	ENSG00000221926.11|TRIM16|pc|chr17:15684195:15684299:-	0	-
#Deleted in new
chr17	15684195	15684300	ENSG00000221926.11|TRIM16|pc|chr17:15684195:15684300:-	0	-
#Deleted in new
chr17	15684195	15684301	ENSG00000221926.11|TRIM16|pc|chr17:15684195:15684301:-	0	-
#Deleted in new
chr17	15684195	15684310	ENSG00000221926.11|TRIM16|pc|chr17:15684195:15684310:-	0	-
#Deleted in new
chr17	15684195	15684311	ENSG00000221926.11|TRIM16|pc|chr17:15684195:15684311:-	0	-
#Deleted in new
chr17	15711340	15711437	ENSG00000187607.15|ZNF286A|pc|chr17:15711340:15711437:+	0	+
#Deleted in new
chr17	15732246	15732384	ENSG00000214946.14|TBC1D26|pc|chr17:15732246:15732384:+	0	+
#Deleted in new
chr17	15732255	15732384	ENSG00000214946.14|TBC1D26|pc|chr17:15732255:15732384:+	0	+
#Deleted in new
chr17	15732256	15732384	ENSG00000214946.14|TBC1D26|pc|chr17:15732256:15732384:+	0	+
#Deleted in new
chr17	15732276	15732384	ENSG00000214946.14|TBC1D26|pc|chr17:15732276:15732384:+	0	+
#Deleted in new
chr17	15732282	15732384	ENSG00000214946.14|TBC1D26|pc|chr17:15732282:15732384:+	0	+
#Deleted in new
chr17	15732307	15732384	ENSG00000214946.14|TBC1D26|pc|chr17:15732307:15732384:+	0	+
#Deleted in new
chr17	15733713	15733937	ENSG00000214946.14|TBC1D26|pc|chr17:15733713:15733937:+	0	+
#Deleted in new
chr17	15733835	15734088	ENSG00000214946.14|TBC1D26|pc|chr17:15733835:15734088:+	0	+
#Deleted in new
chr17	15733844	15734088	ENSG00000214946.14|TBC1D26|pc|chr17:15733844:15734088:+	0	+
#Deleted in new
chr17	15734041	15734088	ENSG00000214946.14|TBC1D26|pc|chr17:15734041:15734088:+	0	+
#Deleted in new
chr1	71573433	71573558	ENSG00000231985.1|AL354949.1|lncRNA|chr1:71573433:71573558:+	0	+
#Deleted in new
chr17	15734703	15734863	ENSG00000214946.14|TBC1D26|pc|chr17:15734703:15734863:+	0	+
#Deleted in new
chr17	15734703	15734874	ENSG00000214946.14|TBC1D26|pc|chr17:15734703:15734874:+	0	+
#Deleted in new
chr17	15734703	15735037	ENSG00000214946.14|TBC1D26|pc|chr17:15734703:15735037:+	0	+
#Deleted in new
chr17	15734703	15735070	ENSG00000214946.14|TBC1D26|pc|chr17:15734703:15735070:+	0	+
#Deleted in new
chr17	15734732	15734874	ENSG00000214946.14|TBC1D26|pc|chr17:15734732:15734874:+	0	+
#Deleted in new
chr17	15734732	15735033	ENSG00000214946.14|TBC1D26|pc|chr17:15734732:15735033:+	0	+
#Deleted in new
chr17	15734929	15735011	ENSG00000255104.8|AC005324.4|pc|chr17:15734929:15735011:+	0	+
#Deleted in new
chr17	15734929	15735070	ENSG00000214946.14|TBC1D26|pc|chr17:15734929:15735070:+	0	+
#Deleted in new
chr17	15734929	15735070	ENSG00000255104.8|AC005324.4|pc|chr17:15734929:15735070:+	0	+
#Deleted in new
chr17	15734968	15735070	ENSG00000214946.14|TBC1D26|pc|chr17:15734968:15735070:+	0	+
#Deleted in new
chr17	15735022	15735375	ENSG00000233002.2|AC005324.1|lncRNA|chr17:15735022:15735375:-	0	-
#Deleted in new
chr17	15735347	15735371	ENSG00000255104.8|AC005324.4|pc|chr17:15735347:15735371:+	0	+
#Deleted in new
chr17	15735347	15735389	ENSG00000214946.14|TBC1D26|pc|chr17:15735347:15735389:+	0	+
#Deleted in new
chr17	15735347	15735395	ENSG00000214946.14|TBC1D26|pc|chr17:15735347:15735395:+	0	+
#Deleted in new
chr17	15735347	15735423	ENSG00000214946.14|TBC1D26|pc|chr17:15735347:15735423:+	0	+
#Deleted in new
chr17	15735347	15735423	ENSG00000255104.8|AC005324.4|pc|chr17:15735347:15735423:+	0	+
#Deleted in new
chr17	15735596	15735679	ENSG00000214946.14|TBC1D26|pc|chr17:15735596:15735679:+	0	+
#Deleted in new
chr17	15735596	15735679	ENSG00000255104.8|AC005324.4|pc|chr17:15735596:15735679:+	0	+
#Deleted in new
chr17	15735719	15735835	ENSG00000233002.2|AC005324.1|lncRNA|chr17:15735719:15735835:-	0	-
#Deleted in new
chr17	15736461	15736549	ENSG00000233002.2|AC005324.1|lncRNA|chr17:15736461:15736549:-	0	-
#Deleted in new
chr17	15737483	15737523	ENSG00000214946.14|TBC1D26|pc|chr17:15737483:15737523:+	0	+
#Deleted in new
chr17	15737483	15737560	ENSG00000255104.8|AC005324.4|pc|chr17:15737483:15737560:+	0	+
#Deleted in new
chr17	15737483	15738387	ENSG00000214946.14|TBC1D26|pc|chr17:15737483:15738387:+	0	+
#Deleted in new
chr17	15737483	15738387	ENSG00000255104.8|AC005324.4|pc|chr17:15737483:15738387:+	0	+
#Deleted in new
chr17	15737996	15738077	ENSG00000214946.14|TBC1D26|pc|chr17:15737996:15738077:+	0	+
#Deleted in new
chr17	15738279	15738387	ENSG00000214946.14|TBC1D26|pc|chr17:15738279:15738387:+	0	+
#Deleted in new
chr17	15738338	15738830	ENSG00000214946.14|TBC1D26|pc|chr17:15738338:15738830:+	0	+
#Deleted in new
chr17	15738502	15738789	ENSG00000233002.2|AC005324.1|lncRNA|chr17:15738502:15738789:-	0	-
#Deleted in new
chr17	15738720	15738830	ENSG00000214946.14|TBC1D26|pc|chr17:15738720:15738830:+	0	+
#Deleted in new
chr17	15738720	15738830	ENSG00000255104.8|AC005324.4|pc|chr17:15738720:15738830:+	0	+
#Deleted in new
chr17	15740099	15740148	ENSG00000214946.14|TBC1D26|pc|chr17:15740099:15740148:+	0	+
#Deleted in new
chr17	15740099	15740148	ENSG00000255104.8|AC005324.4|pc|chr17:15740099:15740148:+	0	+
#Deleted in new
chr17	15740099	15740734	ENSG00000214946.14|TBC1D26|pc|chr17:15740099:15740734:+	0	+
#Deleted in new
chr17	15740099	15740941	ENSG00000214946.14|TBC1D26|pc|chr17:15740099:15740941:+	0	+
#Partially deleted in new
chr17	15740257	15742036	ENSG00000214946.14|TBC1D26|pc|chr17:15740257:15742036:+	0	+
#Deleted in new
chr17	15740627	15740736	ENSG00000233002.2|AC005324.1|lncRNA|chr17:15740627:15740736:-	0	-
#Deleted in new
chr17	15741941	15742036	ENSG00000214946.14|TBC1D26|pc|chr17:15741941:15742036:+	0	+
#Deleted in new
chr17	15741941	15742036	ENSG00000255104.8|AC005324.4|pc|chr17:15741941:15742036:+	0	+
#Deleted in new
chr17	15743366	15743516	ENSG00000214946.14|TBC1D26|pc|chr17:15743366:15743516:+	0	+
#Deleted in new
chr17	15743366	15743516	ENSG00000255104.8|AC005324.4|pc|chr17:15743366:15743516:+	0	+
#Deleted in new
chr17	15743602	15743791	ENSG00000233002.2|AC005324.1|lncRNA|chr17:15743602:15743791:-	0	-
#Deleted in new
chr17	15743602	15743799	ENSG00000233002.2|AC005324.1|lncRNA|chr17:15743602:15743799:-	0	-
#Deleted in new
chr17	15744242	15744452	ENSG00000214946.14|TBC1D26|pc|chr17:15744242:15744452:+	0	+
#Deleted in new
chr17	15744242	15744454	ENSG00000214946.14|TBC1D26|pc|chr17:15744242:15744454:+	0	+
#Deleted in new
chr17	15746077	15746162	ENSG00000214946.14|TBC1D26|pc|chr17:15746077:15746162:+	0	+
#Deleted in new
chr17	15761613	15761844	ENSG00000233193.1|AC005324.2|lncRNA|chr17:15761613:15761844:-	0	-
#Deleted in new
chr17	15763585	15763769	ENSG00000233193.1|AC005324.2|lncRNA|chr17:15763585:15763769:-	0	-
#Deleted in new
chr17	15815964	15816042	ENSG00000237057.2|LINC02087|lncRNA|chr17:15815964:15816042:-	0	-
#Deleted in new
chr17	15817527	15817742	ENSG00000237057.2|LINC02087|lncRNA|chr17:15817527:15817742:-	0	-
#Partially deleted in new
chr17	1585238	1586051	ENSG00000167703.14|SLC43A2|pc|chr17:1585238:1586051:-	0	-
#Deleted in new
chr17	15977578	15977700	ENSG00000214941.7|ZSWIM7|pc|chr17:15977578:15977700:-	0	-
#Deleted in new
chr17	15986799	15986886	ENSG00000214941.7|ZSWIM7|pc|chr17:15986799:15986886:-	0	-
#Deleted in new
chr17	15986799	15986892	ENSG00000214941.7|ZSWIM7|pc|chr17:15986799:15986892:-	0	-
#Partially deleted in new
chr17	15990864	15991104	ENSG00000214941.7|ZSWIM7|pc|chr17:15990864:15991104:-	0	-
#Partially deleted in new
chr17	16023322	16023653	ENSG00000275413.1|AC002553.4|lncRNA|chr17:16023322:16023653:-	0	-
#Deleted in new
chr17	16024488	16024582	ENSG00000011295.15|TTC19|pc|chr17:16024488:16024582:+	0	+
#Deleted in new
chr17	16122609	16122635	ENSG00000141027.20|NCOR1|pc|chr17:16122609:16122635:-	0	-
#Deleted in new
chr17	16198170	16198719	ENSG00000141027.20|NCOR1|pc|chr17:16198170:16198719:-	0	-
#Deleted in new
chr17	16198600	16198719	ENSG00000141027.20|NCOR1|pc|chr17:16198600:16198719:-	0	-
#Deleted in new
chr17	16279656	16279812	ENSG00000108474.16|PIGL|pc|chr17:16279656:16279812:+	0	+
#Deleted in new
chr17	16284020	16284068	ENSG00000108474.16|PIGL|pc|chr17:16284020:16284068:+	0	+
#Deleted in new
chr17	16312386	16312824	ENSG00000108474.16|PIGL|pc|chr17:16312386:16312824:+	0	+
#Partially deleted in new
chr17	16316680	16317115	ENSG00000108474.16|PIGL|pc|chr17:16316680:16317115:+	0	+
#Partially deleted in new
chr17	16316680	16317624	ENSG00000108474.16|PIGL|pc|chr17:16316680:16317624:+	0	+
#Partially deleted in new
chr17	16316701	16317688	ENSG00000108474.16|PIGL|pc|chr17:16316701:16317688:+	0	+
#Deleted in new
chr17	16316794	16316833	ENSG00000108474.16|PIGL|pc|chr17:16316794:16316833:+	0	+
#Deleted in new
chr17	16324352	16324391	ENSG00000108474.16|PIGL|pc|chr17:16324352:16324391:+	0	+
#Deleted in new
chr17	16326484	16326905	ENSG00000108474.16|PIGL|pc|chr17:16326484:16326905:+	0	+
#Deleted in new
chr17	16326843	16326905	ENSG00000108474.16|PIGL|pc|chr17:16326843:16326905:+	0	+
#Partially deleted in new
chr17	16344317	16344495	ENSG00000108474.16|PIGL|pc|chr17:16344317:16344495:+	0	+
#Deleted in new
chr17	16347544	16347674	ENSG00000108474.16|PIGL|pc|chr17:16347544:16347674:+	0	+
#Partially deleted in new
chr17	16348037	16348708	ENSG00000166582.9|CENPV|pc|chr17:16348037:16348708:-	0	-
#Deleted in new
chr17	163539	163738	ENSG00000272636.3|DOC2B|pc|chr17:163539:163738:-	0	-
#Partially deleted in new
chr17	16439055	16439245	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16439055:16439245:+	0	+
#Partially deleted in new
chr17	16439320	16439414	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16439320:16439414:+	0	+
#Deleted in new
chr17	16439326	16439393	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16439326:16439393:+	0	+
#Partially deleted in new
chr17	16439326	16439414	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16439326:16439414:+	0	+
#Partially deleted in new
chr17	16439344	16439414	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16439344:16439414:+	0	+
#Deleted in new
chr17	16439659	16439691	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16439659:16439691:+	0	+
#Deleted in new
chr17	16439659	16439703	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16439659:16439703:+	0	+
#Deleted in new
chr17	16440478	16440657	ENSG00000266651.1|AC093484.5|lncRNA|chr17:16440478:16440657:-	0	-
#Deleted in new
chr17	16440827	16440952	ENSG00000266651.1|AC093484.5|lncRNA|chr17:16440827:16440952:-	0	-
#Duplicated in new
chr17	16441073	16441566	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16441073:16441566:+	0	+
#Split in new
chr17	16441367	16441966	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16441367:16441966:+	0	+
#Split in new
chr17	16441367	16441987	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16441367:16441987:+	0	+
#Split in new
chr17	16441367	16441995	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16441367:16441995:+	0	+
#Split in new
chr17	16441367	16441999	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16441367:16441999:+	0	+
#Split in new
chr17	16441367	16442012	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16441367:16442012:+	0	+
#Split in new
chr17	16441367	16442023	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16441367:16442023:+	0	+
#Split in new
chr17	16441367	16442028	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16441367:16442028:+	0	+
#Partially deleted in new
chr17	16441576	16444131	ENSG00000181350.11|LRRC75A|pc|chr17:16441576:16444131:-	0	-
#Partially deleted in new
chr17	16442013	16444131	ENSG00000181350.11|LRRC75A|pc|chr17:16442013:16444131:-	0	-
#Deleted in new
chr17	16446879	16447031	ENSG00000181350.11|LRRC75A|pc|chr17:16446879:16447031:-	0	-
#Deleted in new
chr17	16463163	16463247	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16463163:16463247:+	0	+
#Deleted in new
chr17	16463163	16463317	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16463163:16463317:+	0	+
#Deleted in new
chr17	16463166	16463247	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16463166:16463247:+	0	+
#Deleted in new
chr17	16463166	16463317	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16463166:16463317:+	0	+
#Deleted in new
chr17	16463718	16463850	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16463718:16463850:+	0	+
#Deleted in new
chr17	16463718	16463986	ENSG00000175061.17|LRRC75A-AS1|lncRNA|chr17:16463718:16463986:+	0	+
#Deleted in new
chr17	1651980	1652037	ENSG00000174231.16|PRPF8|pc|chr17:1651980:1652037:-	0	-
#Partially deleted in new
chr17	1652730	1653683	ENSG00000174231.16|PRPF8|pc|chr17:1652730:1653683:-	0	-
#Deleted in new
chr17	16557984	16558362	ENSG00000266803.1|AC127540.1|lncRNA|chr17:16557984:16558362:-	0	-
#Deleted in new
chr17	16558958	16559269	ENSG00000266803.1|AC127540.1|lncRNA|chr17:16558958:16559269:-	0	-
#Deleted in new
chr17	16631343	16631715	ENSG00000197566.9|ZNF624|pc|chr17:16631343:16631715:-	0	-
#Deleted in new
chr17	16647328	16647394	ENSG00000197566.9|ZNF624|pc|chr17:16647328:16647394:-	0	-
#Deleted in new
chr17	16653903	16653970	ENSG00000264765.1|AC098850.3|lncRNA|chr17:16653903:16653970:+	0	+
#Partially deleted in new
chr17	16654083	16654787	ENSG00000264765.1|AC098850.3|lncRNA|chr17:16654083:16654787:+	0	+
#Deleted in new
chr17	16689536	16690193	ENSG00000170160.17|CCDC144A|pc|chr17:16689536:16690193:+	0	+
#Deleted in new
chr17	16695279	16695486	ENSG00000170160.17|CCDC144A|pc|chr17:16695279:16695486:+	0	+
#Deleted in new
chr17	16705150	16705399	ENSG00000170160.17|CCDC144A|pc|chr17:16705150:16705399:+	0	+
#Deleted in new
chr17	16705150	16705399	ENSG00000266302.6|AC098850.4|pc|chr17:16705150:16705399:+	0	+
#Partially deleted in new
chr17	16705150	16707398	ENSG00000170160.17|CCDC144A|pc|chr17:16705150:16707398:+	0	+
#Deleted in new
chr17	16705283	16705399	ENSG00000170160.17|CCDC144A|pc|chr17:16705283:16705399:+	0	+
#Duplicated in new
chr17	16708795	16709633	ENSG00000170160.17|CCDC144A|pc|chr17:16708795:16709633:+	0	+
#Duplicated in new
chr17	16708795	16709635	ENSG00000170160.17|CCDC144A|pc|chr17:16708795:16709635:+	0	+
#Duplicated in new
chr17	16708795	16709635	ENSG00000266302.6|AC098850.4|pc|chr17:16708795:16709635:+	0	+
#Duplicated in new
chr17	16727526	16727895	ENSG00000170160.17|CCDC144A|pc|chr17:16727526:16727895:+	0	+
#Duplicated in new
chr17	16763964	16764863	ENSG00000170160.17|CCDC144A|pc|chr17:16763964:16764863:+	0	+
#Split in new
chr17	16763964	16766473	ENSG00000170160.17|CCDC144A|pc|chr17:16763964:16766473:+	0	+
#Deleted in new
chr17	16767026	16767294	ENSG00000170160.17|CCDC144A|pc|chr17:16767026:16767294:+	0	+
#Partially deleted in new
chr17	16773496	16777881	ENSG00000170160.17|CCDC144A|pc|chr17:16773496:16777881:+	0	+
#Deleted in new
chr17	16783622	16783733	ENSG00000266302.6|AC098850.4|pc|chr17:16783622:16783733:+	0	+
#Deleted in new
chr17	16784422	16784480	ENSG00000266302.6|AC098850.4|pc|chr17:16784422:16784480:+	0	+
#Deleted in new
chr17	16786947	16787122	ENSG00000266302.6|AC098850.4|pc|chr17:16786947:16787122:+	0	+
#Deleted in new
chr17	16788607	16789234	ENSG00000264673.1|AC098850.2|lncRNA|chr17:16788607:16789234:-	0	-
#Deleted in new
chr17	16804626	16804678	ENSG00000264729.1|AC022596.1|lncRNA|chr17:16804626:16804678:+	0	+
#Deleted in new
chr17	16805457	16805707	ENSG00000264729.1|AC022596.1|lncRNA|chr17:16805457:16805707:+	0	+
#Deleted in new
chr17	16808842	16809244	ENSG00000272815.1|AC098850.5|lncRNA|chr17:16808842:16809244:+	0	+
#Deleted in new
chr17	16809878	16810047	ENSG00000272815.1|AC098850.5|lncRNA|chr17:16809878:16810047:+	0	+
#Deleted in new
chr17	16861145	16864223	ENSG00000283033.1|AC022596.2|lncRNA|chr17:16861145:16864223:+	0	+
#Deleted in new
chr17	16929815	16929908	ENSG00000240505.8|TNFRSF13B|pc|chr17:16929815:16929908:-	0	-
#Deleted in new
chr17	16930308	16930408	ENSG00000240505.8|TNFRSF13B|pc|chr17:16930308:16930408:-	0	-
#Deleted in new
chr17	16932170	16932253	ENSG00000240505.8|TNFRSF13B|pc|chr17:16932170:16932253:-	0	-
#Deleted in new
chr17	16932429	16932505	ENSG00000240505.8|TNFRSF13B|pc|chr17:16932429:16932505:-	0	-
#Deleted in new
chr17	16932732	16932937	ENSG00000240505.8|TNFRSF13B|pc|chr17:16932732:16932937:-	0	-
#Deleted in new
chr17	16932782	16932937	ENSG00000240505.8|TNFRSF13B|pc|chr17:16932782:16932937:-	0	-
#Deleted in new
chr17	16933064	16933176	ENSG00000240505.8|TNFRSF13B|pc|chr17:16933064:16933176:-	0	-
#Partially deleted in new
chr17	16975998	16977630	ENSG00000230709.1|AC104024.1|lncRNA|chr17:16975998:16977630:-	0	-
#Deleted in new
chr17	16981300	16981353	ENSG00000230709.1|AC104024.1|lncRNA|chr17:16981300:16981353:-	0	-
#Deleted in new
chr17	16988328	16988523	ENSG00000230969.2|LINC02090|lncRNA|chr17:16988328:16988523:+	0	+
#Deleted in new
chr17	16988914	16989050	ENSG00000230969.2|LINC02090|lncRNA|chr17:16988914:16989050:+	0	+
#Deleted in new
chr17	16990108	16990177	ENSG00000230969.2|LINC02090|lncRNA|chr17:16990108:16990177:+	0	+
#Partially deleted in new
chr17	17011913	17014990	ENSG00000260328.1|AC104024.2|lncRNA|chr17:17011913:17014990:-	0	-
#Partially deleted in new
chr17	1702789	1708222	ENSG00000185561.9|TLCD2|pc|chr17:1702789:1708222:-	0	-
#Deleted in new
chr1	71703181	71703405	ENSG00000172260.14|NEGR1|pc|chr1:71703181:71703405:-	0	-
#Deleted in new
chr17	17057635	17057950	ENSG00000133030.20|MPRIP|pc|chr17:17057635:17057950:+	0	+
#Deleted in new
chr17	17076037	17076398	ENSG00000225442.2|MPRIP-AS1|lncRNA|chr17:17076037:17076398:-	0	-
#Deleted in new
chr17	17181503	17183257	ENSG00000278864.1|AC055811.4|lncRNA|chr17:17181503:17183257:+	0	+
#Partially deleted in new
chr17	17184822	17192648	ENSG00000133030.20|MPRIP|pc|chr17:17184822:17192648:+	0	+
#Deleted in new
chr17	17186464	17186648	ENSG00000133030.20|MPRIP|pc|chr17:17186464:17186648:+	0	+
#Deleted in new
chr17	17189240	17189500	ENSG00000133030.20|MPRIP|pc|chr17:17189240:17189500:+	0	+
#Partially deleted in new
chr17	17200994	17203098	ENSG00000179598.5|PLD6|pc|chr17:17200994:17203098:-	0	-
#Deleted in new
chr17	17201457	17201633	ENSG00000133030.20|MPRIP|pc|chr17:17201457:17201633:+	0	+
#Deleted in new
chr17	17204392	17204429	ENSG00000264187.1|AC055811.2|pc|chr17:17204392:17204429:-	0	-
#Deleted in new
chr17	17207024	17207069	ENSG00000264187.1|AC055811.2|pc|chr17:17207024:17207069:-	0	-
#Deleted in new
chr17	17217489	17217679	ENSG00000133030.20|MPRIP|pc|chr17:17217489:17217679:+	0	+
#Partially deleted in new
chr17	17219566	17221628	ENSG00000154803.12|FLCN|pc|chr17:17219566:17221628:-	0	-
#Partially deleted in new
chr17	17224552	17226322	ENSG00000154803.12|FLCN|pc|chr17:17224552:17226322:-	0	-
#Partially deleted in new
chr17	17227888	17229477	ENSG00000154803.12|FLCN|pc|chr17:17227888:17229477:-	0	-
#Deleted in new
chr17	17228622	17228729	ENSG00000154803.12|FLCN|pc|chr17:17228622:17228729:-	0	-
#Deleted in new
chr17	17231523	17231882	ENSG00000154803.12|FLCN|pc|chr17:17231523:17231882:-	0	-
#Deleted in new
chr17	17231793	17231882	ENSG00000154803.12|FLCN|pc|chr17:17231793:17231882:-	0	-
#Deleted in new
chr17	17231793	17231882	ENSG00000264187.1|AC055811.2|pc|chr17:17231793:17231882:-	0	-
#Deleted in new
chr17	17236911	17237139	ENSG00000154803.12|FLCN|pc|chr17:17236911:17237139:-	0	-
#Deleted in new
chr17	17236911	17237182	ENSG00000154803.12|FLCN|pc|chr17:17236911:17237182:-	0	-
#Deleted in new
chr17	17236911	17237185	ENSG00000264187.1|AC055811.2|pc|chr17:17236911:17237185:-	0	-
#Deleted in new
chr17	17236911	17237188	ENSG00000154803.12|FLCN|pc|chr17:17236911:17237188:-	0	-
#Deleted in new
chr17	17261599	17261692	ENSG00000141030.12|COPS3|pc|chr17:17261599:17261692:-	0	-
#Deleted in new
chr17	17333510	17333588	ENSG00000205309.13|NT5M|pc|chr17:17333510:17333588:+	0	+
#Deleted in new
chr17	17507350	17507617	ENSG00000265511.1|AC020558.2|lncRNA|chr17:17507350:17507617:+	0	+
#Deleted in new
chr17	17508783	17508843	ENSG00000133027.17|PEMT|pc|chr17:17508783:17508843:-	0	-
#Deleted in new
chr17	17517973	17518157	ENSG00000133027.17|PEMT|pc|chr17:17517973:17518157:-	0	-
#Deleted in new
chr17	17519026	17519080	ENSG00000133027.17|PEMT|pc|chr17:17519026:17519080:-	0	-
#Deleted in new
chr17	17565250	17565306	ENSG00000133027.17|PEMT|pc|chr17:17565250:17565306:-	0	-
#Deleted in new
chr17	17610335	17610485	ENSG00000264666.1|AC020558.1|lncRNA|chr17:17610335:17610485:+	0	+
#Deleted in new
chr17	17616042	17617745	ENSG00000279200.1|AC020558.3|lncRNA|chr17:17616042:17617745:+	0	+
#Deleted in new
chr17	1766273	1766661	ENSG00000132386.10|SERPINF1|pc|chr17:1766273:1766661:+	0	+
#Deleted in new
chr17	17674025	17674156	ENSG00000223979.2|SMCR2|lncRNA|chr17:17674025:17674156:-	0	-
#Deleted in new
chr17	17677574	17677688	ENSG00000223979.2|SMCR2|lncRNA|chr17:17677574:17677688:-	0	-
#Partially deleted in new
chr17	17765817	17766302	ENSG00000237328.1|RAI1-AS1|lncRNA|chr17:17765817:17766302:-	0	-
#Partially deleted in new
chr17	17776685	17779529	ENSG00000226746.2|SMCR5|lncRNA|chr17:17776685:17779529:-	0	-
#Deleted in new
chr17	17777780	17777866	ENSG00000264167.1|AC122129.2|lncRNA|chr17:17777780:17777866:+	0	+
#Partially deleted in new
chr17	17817547	17817591	ENSG00000072310.16|SREBF1|pc|chr17:17817547:17817591:-	0	-
#Partially deleted in new
chr17	17858226	17860041	ENSG00000197815.4|AC122129.1|lncRNA|chr17:17858226:17860041:+	0	+
#Deleted in new
chr17	17863273	17863410	ENSG00000175662.17|TOM1L2|pc|chr17:17863273:17863410:-	0	-
#Deleted in new
chr17	17871964	17872058	ENSG00000175662.17|TOM1L2|pc|chr17:17871964:17872058:-	0	-
#Deleted in new
chr17	17871964	17872064	ENSG00000175662.17|TOM1L2|pc|chr17:17871964:17872064:-	0	-
#Deleted in new
chr1	71794231	71794536	ENSG00000228853.1|NEGR1-IT1|lncRNA|chr1:71794231:71794536:-	0	-
#Partially deleted in new
chr17	17973664	17973751	ENSG00000171962.17|DRC3|pc|chr17:17973664:17973751:+	0	+
#Partially deleted in new
chr17	17973664	17973753	ENSG00000171962.17|DRC3|pc|chr17:17973664:17973753:+	0	+
#Deleted in new
chr1	71798074	71798270	ENSG00000228853.1|NEGR1-IT1|lncRNA|chr1:71798074:71798270:-	0	-
#Partially deleted in new
chr17	18020695	18020998	ENSG00000171953.15|ATPAF2|pc|chr17:18020695:18020998:-	0	-
#Partially deleted in new
chr17	18020729	18020998	ENSG00000171953.15|ATPAF2|pc|chr17:18020729:18020998:-	0	-
#Deleted in new
chr17	18056702	18056759	ENSG00000141034.9|GID4|pc|chr17:18056702:18056759:+	0	+
#Deleted in new
chr17	18056702	18057467	ENSG00000141034.9|GID4|pc|chr17:18056702:18057467:+	0	+
#Deleted in new
chr17	18091917	18092074	ENSG00000108591.9|DRG2|pc|chr17:18091917:18092074:+	0	+
#Deleted in new
chr17	18095420	18095489	ENSG00000108591.9|DRG2|pc|chr17:18095420:18095489:+	0	+
#Partially deleted in new
chr17	18095721	18098359	ENSG00000108591.9|DRG2|pc|chr17:18095721:18098359:+	0	+
#Deleted in new
chr17	1814565	1814795	ENSG00000186532.11|SMYD4|pc|chr17:1814565:1814795:-	0	-
#Partially deleted in new
chr17	18153394	18153896	ENSG00000091536.16|MYO15A|pc|chr17:18153394:18153896:+	0	+
#Partially deleted in new
chr17	18158307	18158365	ENSG00000091536.16|MYO15A|pc|chr17:18158307:18158365:+	0	+
#Partially deleted in new
chr17	18158311	18158365	ENSG00000091536.16|MYO15A|pc|chr17:18158311:18158365:+	0	+
#Deleted in new
chr17	18158337	18158365	ENSG00000091536.16|MYO15A|pc|chr17:18158337:18158365:+	0	+
#Deleted in new
chr17	18158345	18158365	ENSG00000091536.16|MYO15A|pc|chr17:18158345:18158365:+	0	+
#Partially deleted in new
chr17	18160746	18161447	ENSG00000091536.16|MYO15A|pc|chr17:18160746:18161447:+	0	+
#Deleted in new
chr17	18169481	18169621	ENSG00000091536.16|MYO15A|pc|chr17:18169481:18169621:+	0	+
#Deleted in new
chr17	18176564	18178365	ENSG00000266677.1|AC087164.1|lncRNA|chr17:18176564:18178365:-	0	-
#Deleted in new
chr17	18178244	18178365	ENSG00000266677.1|AC087164.1|lncRNA|chr17:18178244:18178365:-	0	-
#Deleted in new
chr17	18263415	18263546	ENSG00000177427.12|MIEF2|pc|chr17:18263415:18263546:+	0	+
#Deleted in new
chr17	18268079	18268828	ENSG00000260647.1|AC127537.3|lncRNA|chr17:18268079:18268828:+	0	+
#Deleted in new
chr17	18271427	18271673	ENSG00000177302.14|TOP3A|pc|chr17:18271427:18271673:-	0	-
#Deleted in new
chr17	18272837	18273336	ENSG00000177302.14|TOP3A|pc|chr17:18272837:18273336:-	0	-
#Deleted in new
chr17	18273243	18273336	ENSG00000177302.14|TOP3A|pc|chr17:18273243:18273336:-	0	-
#Deleted in new
chr17	18307472	18307570	ENSG00000177302.14|TOP3A|pc|chr17:18307472:18307570:-	0	-
#Deleted in new
chr17	18307525	18307570	ENSG00000177302.14|TOP3A|pc|chr17:18307525:18307570:-	0	-
#Deleted in new
chr17	18307531	18307570	ENSG00000177302.14|TOP3A|pc|chr17:18307531:18307570:-	0	-
#Partially deleted in new
chr17	18330683	18333439	ENSG00000176974.19|SHMT1|pc|chr17:18330683:18333439:-	0	-
#Deleted in new
chr17	18348570	18348632	ENSG00000176974.19|SHMT1|pc|chr17:18348570:18348632:-	0	-
#Deleted in new
chr17	18348636	18348672	ENSG00000176974.19|SHMT1|pc|chr17:18348636:18348672:-	0	-
#Deleted in new
chr17	18360413	18360552	ENSG00000176974.19|SHMT1|pc|chr17:18360413:18360552:-	0	-
#Partially deleted in new
chr17	18362987	18363346	ENSG00000176974.19|SHMT1|pc|chr17:18362987:18363346:-	0	-
#Deleted in new
chr17	18386403	18386464	ENSG00000214860.4|EVPLL|pc|chr17:18386403:18386464:+	0	+
#Deleted in new
chr17	18387887	18388984	ENSG00000264177.1|AL353997.2|lncRNA|chr17:18387887:18388984:-	0	-
#Deleted in new
chr17	18388218	18388288	ENSG00000214860.4|EVPLL|pc|chr17:18388218:18388288:+	0	+
#Deleted in new
chr17	18388856	18389377	ENSG00000214860.4|EVPLL|pc|chr17:18388856:18389377:+	0	+
#Deleted in new
chr17	18388856	18389647	ENSG00000214860.4|EVPLL|pc|chr17:18388856:18389647:+	0	+
#Deleted in new
chr17	18414149	18414380	ENSG00000220161.4|LINC02076|lncRNA|chr17:18414149:18414380:+	0	+
#Partially deleted in new
chr17	18483874	18484335	ENSG00000171916.16|LGALS9C|pc|chr17:18483874:18484335:+	0	+
#Deleted in new
chr17	18486754	18486940	ENSG00000171916.16|LGALS9C|pc|chr17:18486754:18486940:+	0	+
#Partially deleted in new
chr17	18523776	18523877	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18523776:18523877:-	0	-
#Partially deleted in new
chr17	18523776	18524397	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18523776:18524397:-	0	-
#Deleted in new
chr17	18523805	18523877	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18523805:18523877:-	0	-
#Deleted in new
chr17	18524142	18524400	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18524142:18524400:-	0	-
#Partially deleted in new
chr17	18524565	18526846	ENSG00000213077.5|FAM106A|pc|chr17:18524565:18526846:-	0	-
#Deleted in new
chr17	18528572	18528600	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18528572:18528600:-	0	-
#Deleted in new
chr17	18528572	18528694	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18528572:18528694:-	0	-
#Deleted in new
chr17	18528572	18528747	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18528572:18528747:-	0	-
#Deleted in new
chr17	18528572	18528984	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18528572:18528984:-	0	-
#Deleted in new
chr17	18528572	18529328	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18528572:18529328:-	0	-
#Deleted in new
chr17	18528585	18528747	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18528585:18528747:-	0	-
#Deleted in new
chr17	18532505	18532597	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18532505:18532597:-	0	-
#Deleted in new
chr17	18532505	18532878	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18532505:18532878:-	0	-
#Deleted in new
chr17	18532505	18533034	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18532505:18533034:-	0	-
#Deleted in new
chr17	18532711	18532902	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18532711:18532902:-	0	-
#Deleted in new
chr17	18533346	18533391	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18533346:18533391:-	0	-
#Deleted in new
chr17	18533346	18533538	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18533346:18533538:-	0	-
#Deleted in new
chr17	18533346	18533632	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18533346:18533632:-	0	-
#Deleted in new
chr17	18533346	18534062	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18533346:18534062:-	0	-
#Partially deleted in new
chr17	18540926	18541236	ENSG00000273018.5|AC107983.2|lncRNA|chr17:18540926:18541236:-	0	-
#Deleted in new
chr17	1854138	1854274	ENSG00000132383.11|RPA1|pc|chr17:1854138:1854274:+	0	+
#Split in new
chr17	18635528	18636597	ENSG00000189375.10|TBC1D28|pc|chr17:18635528:18636597:-	0	-
#Deleted in new
chr17	18637863	18637973	ENSG00000189375.10|TBC1D28|pc|chr17:18637863:18637973:-	0	-
#Deleted in new
chr17	18638312	18638420	ENSG00000189375.10|TBC1D28|pc|chr17:18638312:18638420:-	0	-
#Deleted in new
chr17	18638620	18638701	ENSG00000189375.10|TBC1D28|pc|chr17:18638620:18638701:-	0	-
#Deleted in new
chr17	18638860	18639214	ENSG00000189375.10|TBC1D28|pc|chr17:18638860:18639214:-	0	-
#Deleted in new
chr17	18639174	18639214	ENSG00000189375.10|TBC1D28|pc|chr17:18639174:18639214:-	0	-
#Deleted in new
chr17	18639175	18639214	ENSG00000189375.10|TBC1D28|pc|chr17:18639175:18639214:-	0	-
#Deleted in new
chr17	18641021	18641104	ENSG00000189375.10|TBC1D28|pc|chr17:18641021:18641104:-	0	-
#Deleted in new
chr17	18641277	18641353	ENSG00000189375.10|TBC1D28|pc|chr17:18641277:18641353:-	0	-
#Deleted in new
chr17	18641305	18641353	ENSG00000189375.10|TBC1D28|pc|chr17:18641305:18641353:-	0	-
#Deleted in new
chr17	18641311	18641353	ENSG00000189375.10|TBC1D28|pc|chr17:18641311:18641353:-	0	-
#Deleted in new
chr17	18641631	18641733	ENSG00000189375.10|TBC1D28|pc|chr17:18641631:18641733:-	0	-
#Deleted in new
chr17	18641631	18641998	ENSG00000189375.10|TBC1D28|pc|chr17:18641631:18641998:-	0	-
#Deleted in new
chr17	18641664	18641998	ENSG00000189375.10|TBC1D28|pc|chr17:18641664:18641998:-	0	-
#Deleted in new
chr17	18641668	18641969	ENSG00000189375.10|TBC1D28|pc|chr17:18641668:18641969:-	0	-
#Deleted in new
chr17	18641827	18641969	ENSG00000189375.10|TBC1D28|pc|chr17:18641827:18641969:-	0	-
#Deleted in new
chr17	18641827	18641998	ENSG00000189375.10|TBC1D28|pc|chr17:18641827:18641998:-	0	-
#Deleted in new
chr17	18641827	18642424	ENSG00000189375.10|TBC1D28|pc|chr17:18641827:18642424:-	0	-
#Deleted in new
chr17	18641838	18641998	ENSG00000189375.10|TBC1D28|pc|chr17:18641838:18641998:-	0	-
#Deleted in new
chr17	18642585	18642632	ENSG00000189375.10|TBC1D28|pc|chr17:18642585:18642632:-	0	-
#Deleted in new
chr17	18642585	18642829	ENSG00000189375.10|TBC1D28|pc|chr17:18642585:18642829:-	0	-
#Deleted in new
chr17	18642585	18642838	ENSG00000189375.10|TBC1D28|pc|chr17:18642585:18642838:-	0	-
#Deleted in new
chr17	18642736	18642960	ENSG00000189375.10|TBC1D28|pc|chr17:18642736:18642960:-	0	-
#Deleted in new
chr17	18644289	18644366	ENSG00000189375.10|TBC1D28|pc|chr17:18644289:18644366:-	0	-
#Deleted in new
chr17	18644289	18644417	ENSG00000189375.10|TBC1D28|pc|chr17:18644289:18644417:-	0	-
#Deleted in new
chr17	18644289	18644418	ENSG00000189375.10|TBC1D28|pc|chr17:18644289:18644418:-	0	-
#Deleted in new
chr17	18644289	18644427	ENSG00000189375.10|TBC1D28|pc|chr17:18644289:18644427:-	0	-
#Deleted in new
chr17	18697997	18698114	ENSG00000108448.21|TRIM16L|pc|chr17:18697997:18698114:+	0	+
#Deleted in new
chr17	18698007	18698114	ENSG00000108448.21|TRIM16L|pc|chr17:18698007:18698114:+	0	+
#Deleted in new
chr17	18698009	18699275	ENSG00000108448.21|TRIM16L|pc|chr17:18698009:18699275:+	0	+
#Deleted in new
chr17	18698027	18698114	ENSG00000108448.21|TRIM16L|pc|chr17:18698027:18698114:+	0	+
#Deleted in new
chr17	18699153	18699275	ENSG00000108448.21|TRIM16L|pc|chr17:18699153:18699275:+	0	+
#Deleted in new
chr17	18699214	18699275	ENSG00000108448.21|TRIM16L|pc|chr17:18699214:18699275:+	0	+
#Deleted in new
chr17	18699359	18699457	ENSG00000108448.21|TRIM16L|pc|chr17:18699359:18699457:+	0	+
#Deleted in new
chr17	18701356	18701445	ENSG00000108448.21|TRIM16L|pc|chr17:18701356:18701445:+	0	+
#Duplicated in new
chr17	18705062	18705164	ENSG00000108448.21|TRIM16L|pc|chr17:18705062:18705164:+	0	+
#Deleted in new
chr17	18721776	18721862	ENSG00000108448.21|TRIM16L|pc|chr17:18721776:18721862:+	0	+
#Deleted in new
chr17	18769476	18769702	ENSG00000171931.12|FBXW10|pc|chr17:18769476:18769702:+	0	+
#Deleted in new
chr17	18775135	18775192	ENSG00000171931.12|FBXW10|pc|chr17:18775135:18775192:+	0	+
#Partially deleted in new
chr17	18795805	18797668	ENSG00000171928.13|TVP23B|pc|chr17:18795805:18797668:+	0	+
#Deleted in new
chr17	18809955	18810940	ENSG00000265478.2|AC107982.3|lncRNA|chr17:18809955:18810940:+	0	+
#Deleted in new
chr17	18842227	18842364	ENSG00000141127.14|PRPSAP2|pc|chr17:18842227:18842364:+	0	+
#Partially deleted in new
chr17	18856340	18856429	ENSG00000141127.14|PRPSAP2|pc|chr17:18856340:18856429:+	0	+
#Partially deleted in new
chr17	18856341	18856476	ENSG00000141127.14|PRPSAP2|pc|chr17:18856341:18856476:+	0	+
#Partially deleted in new
chr17	18856349	18856429	ENSG00000141127.14|PRPSAP2|pc|chr17:18856349:18856429:+	0	+
#Partially deleted in new
chr17	18856352	18856429	ENSG00000141127.14|PRPSAP2|pc|chr17:18856352:18856429:+	0	+
#Partially deleted in new
chr17	18856367	18856429	ENSG00000141127.14|PRPSAP2|pc|chr17:18856367:18856429:+	0	+
#Deleted in new
chr17	18856380	18856429	ENSG00000141127.14|PRPSAP2|pc|chr17:18856380:18856429:+	0	+
#Partially deleted in new
chr17	18861422	18861466	ENSG00000264273.1|AC107982.2|lncRNA|chr17:18861422:18861466:-	0	-
#Deleted in new
chr17	18864867	18864941	ENSG00000141127.14|PRPSAP2|pc|chr17:18864867:18864941:+	0	+
#Deleted in new
chr17	18904279	18905046	ENSG00000141127.14|PRPSAP2|pc|chr17:18904279:18905046:+	0	+
#Deleted in new
chr17	18917431	18917536	ENSG00000141127.14|PRPSAP2|pc|chr17:18917431:18917536:+	0	+
#Partially deleted in new
chr17	18928267	18928957	ENSG00000141127.14|PRPSAP2|pc|chr17:18928267:18928957:+	0	+
#Deleted in new
chr17	18950344	18950858	ENSG00000154025.15|SLC5A10|pc|chr17:18950344:18950858:+	0	+
#Deleted in new
chr17	18953559	18954149	ENSG00000196893.3|AC090286.1|lncRNA|chr17:18953559:18954149:-	0	-
#Deleted in new
chr17	19017283	19017394	ENSG00000154025.15|SLC5A10|pc|chr17:19017283:19017394:+	0	+
#Partially deleted in new
chr17	19017640	19019591	ENSG00000154025.15|SLC5A10|pc|chr17:19017640:19019591:+	0	+
#Partially deleted in new
chr17	19077774	19077913	ENSG00000230197.6|AC007952.3|lncRNA|chr17:19077774:19077913:+	0	+
#Partially deleted in new
chr17	19077782	19077913	ENSG00000230197.6|AC007952.3|lncRNA|chr17:19077782:19077913:+	0	+
#Deleted in new
chr17	19079987	19080120	ENSG00000230197.6|AC007952.3|lncRNA|chr17:19079987:19080120:+	0	+
#Deleted in new
chr17	19080370	19080629	ENSG00000230197.6|AC007952.3|lncRNA|chr17:19080370:19080629:+	0	+
#Deleted in new
chr17	19087710	19087878	ENSG00000230197.6|AC007952.3|lncRNA|chr17:19087710:19087878:+	0	+
#Deleted in new
chr17	19087714	19087878	ENSG00000230197.6|AC007952.3|lncRNA|chr17:19087714:19087878:+	0	+
#Deleted in new
chr17	19091068	19091825	ENSG00000263394.1|AC007952.7|lncRNA|chr17:19091068:19091825:-	0	-
#Partially deleted in new
chr17	19093464	19094307	ENSG00000228157.4|AC007952.2|lncRNA|chr17:19093464:19094307:+	0	+
#Deleted in new
chr17	19111999	19112636	ENSG00000262202.4|AC007952.4|lncRNA|chr17:19111999:19112636:-	0	-
#Deleted in new
chr17	191199	191587	ENSG00000273172.1|LINC02091|lncRNA|chr17:191199:191587:-	0	-
#Deleted in new
chr17	19150278	19150397	ENSG00000266664.1|AC007952.9|lncRNA|chr17:19150278:19150397:+	0	+
#Deleted in new
chr17	19151214	19151286	ENSG00000266664.1|AC007952.9|lncRNA|chr17:19151214:19151286:+	0	+
#Partially deleted in new
chr17	19157780	19158620	ENSG00000197665.7|AC007952.1|lncRNA|chr17:19157780:19158620:-	0	-
#Partially deleted in new
chr17	19160788	19162274	ENSG00000262292.2|AC007952.5|lncRNA|chr17:19160788:19162274:+	0	+
#Deleted in new
chr17	19164208	19164372	ENSG00000266311.6|AC007952.8|lncRNA|chr17:19164208:19164372:-	0	-
#Deleted in new
chr17	19164208	19164376	ENSG00000266311.6|AC007952.8|lncRNA|chr17:19164208:19164376:-	0	-
#Deleted in new
chr17	19171958	19172091	ENSG00000266311.6|AC007952.8|lncRNA|chr17:19171958:19172091:-	0	-
#Partially deleted in new
chr17	19174297	19174428	ENSG00000266311.6|AC007952.8|lncRNA|chr17:19174297:19174428:-	0	-
#Partially deleted in new
chr17	19174297	19174436	ENSG00000266311.6|AC007952.8|lncRNA|chr17:19174297:19174436:-	0	-
#Partially deleted in new
chr17	19203824	19203963	ENSG00000236022.6|AC106017.1|lncRNA|chr17:19203824:19203963:+	0	+
#Partially deleted in new
chr17	19203832	19203963	ENSG00000236022.6|AC106017.1|lncRNA|chr17:19203832:19203963:+	0	+
#Deleted in new
chr17	19206169	19206302	ENSG00000236022.6|AC106017.1|lncRNA|chr17:19206169:19206302:+	0	+
#Deleted in new
chr17	19206552	19206811	ENSG00000236022.6|AC106017.1|lncRNA|chr17:19206552:19206811:+	0	+
#Deleted in new
chr17	19213877	19214045	ENSG00000236022.6|AC106017.1|lncRNA|chr17:19213877:19214045:+	0	+
#Deleted in new
chr17	19213881	19214045	ENSG00000236022.6|AC106017.1|lncRNA|chr17:19213881:19214045:+	0	+
#Deleted in new
chr17	19215614	19215809	ENSG00000072134.15|EPN2|pc|chr17:19215614:19215809:+	0	+
#Partially deleted in new
chr17	19219633	19220473	ENSG00000281856.1|AC106017.2|lncRNA|chr17:19219633:19220473:+	0	+
#Deleted in new
chr17	19222248	19222374	ENSG00000072134.15|EPN2|pc|chr17:19222248:19222374:+	0	+
#Deleted in new
chr17	19276396	19276538	ENSG00000072134.15|EPN2|pc|chr17:19276396:19276538:+	0	+
#Deleted in new
chr17	19279857	19279980	ENSG00000072134.15|EPN2|pc|chr17:19279857:19279980:+	0	+
#Deleted in new
chr17	19279861	19279980	ENSG00000072134.15|EPN2|pc|chr17:19279861:19279980:+	0	+
#Deleted in new
chr17	19296595	19297338	ENSG00000235397.1|EPN2-AS1|lncRNA|chr17:19296595:19297338:-	0	-
#Deleted in new
chr17	19303814	19303938	ENSG00000235397.1|EPN2-AS1|lncRNA|chr17:19303814:19303938:-	0	-
#Deleted in new
chr17	19330613	19330676	ENSG00000072134.15|EPN2|pc|chr17:19330613:19330676:+	0	+
#Deleted in new
chr17	19337553	19337748	ENSG00000108641.14|B9D1|pc|chr17:19337553:19337748:-	0	-
#Deleted in new
chr17	19340920	19341326	ENSG00000108641.14|B9D1|pc|chr17:19340920:19341326:-	0	-
#Deleted in new
chr17	19357571	19357634	ENSG00000108641.14|B9D1|pc|chr17:19357571:19357634:-	0	-
#Deleted in new
chr17	19364435	19364601	ENSG00000108641.14|B9D1|pc|chr17:19364435:19364601:-	0	-
#Partially deleted in new
chr17	19371235	19371633	ENSG00000108641.14|B9D1|pc|chr17:19371235:19371633:-	0	-
#Deleted in new
chr17	19371548	19371633	ENSG00000108641.14|B9D1|pc|chr17:19371548:19371633:-	0	-
#Deleted in new
chr17	19372114	19372224	ENSG00000108641.14|B9D1|pc|chr17:19372114:19372224:-	0	-
#Partially deleted in new
chr17	19377720	19378101	ENSG00000166484.19|MAPK7|pc|chr17:19377720:19378101:+	0	+
#Partially deleted in new
chr17	19377752	19378101	ENSG00000166484.19|MAPK7|pc|chr17:19377752:19378101:+	0	+
#Partially deleted in new
chr17	19377798	19378101	ENSG00000166484.19|MAPK7|pc|chr17:19377798:19378101:+	0	+
#Deleted in new
chr17	19377858	19377890	ENSG00000108641.14|B9D1|pc|chr17:19377858:19377890:-	0	-
#Deleted in new
chr17	19377858	19377905	ENSG00000108641.14|B9D1|pc|chr17:19377858:19377905:-	0	-
#Partially deleted in new
chr17	19377858	19378148	ENSG00000108641.14|B9D1|pc|chr17:19377858:19378148:-	0	-
#Partially deleted in new
chr17	19377991	19378101	ENSG00000166484.19|MAPK7|pc|chr17:19377991:19378101:+	0	+
#Partially deleted in new
chr17	19380231	19380501	ENSG00000166484.19|MAPK7|pc|chr17:19380231:19380501:+	0	+
#Deleted in new
chr17	19425318	19425438	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19425318:19425438:-	0	-
#Deleted in new
chr17	19439142	19439474	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19439142:19439474:-	0	-
#Deleted in new
chr17	19448114	19448567	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19448114:19448567:-	0	-
#Deleted in new
chr17	19448157	19448567	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19448157:19448567:-	0	-
#Deleted in new
chr17	19448178	19448567	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19448178:19448567:-	0	-
#Deleted in new
chr17	19448178	19448641	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19448178:19448641:-	0	-
#Deleted in new
chr17	19448241	19448567	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19448241:19448567:-	0	-
#Deleted in new
chr17	19448474	19448641	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19448474:19448641:-	0	-
#Deleted in new
chr17	19449755	19450417	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19449755:19450417:-	0	-
#Deleted in new
chr17	19452755	19453421	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19452755:19453421:-	0	-
#Deleted in new
chr17	19453584	19453603	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19453584:19453603:-	0	-
#Deleted in new
chr17	19453584	19453607	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19453584:19453607:-	0	-
#Deleted in new
chr17	19453584	19453660	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19453584:19453660:-	0	-
#Deleted in new
chr17	19455867	19456005	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19455867:19456005:-	0	-
#Deleted in new
chr17	19455867	19456307	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19455867:19456307:-	0	-
#Deleted in new
chr17	19457079	19457317	ENSG00000231477.2|AC004448.3|lncRNA|chr17:19457079:19457317:+	0	+
#Deleted in new
chr17	19458094	19458399	ENSG00000231477.2|AC004448.3|lncRNA|chr17:19458094:19458399:+	0	+
#Deleted in new
chr17	19460702	19460735	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19460702:19460735:-	0	-
#Deleted in new
chr17	19460702	19460984	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19460702:19460984:-	0	-
#Deleted in new
chr17	19460702	19460992	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19460702:19460992:-	0	-
#Deleted in new
chr17	19460702	19460995	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19460702:19460995:-	0	-
#Deleted in new
chr17	19471118	19471274	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19471118:19471274:-	0	-
#Deleted in new
chr17	19486845	19487065	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19486845:19487065:-	0	-
#Deleted in new
chr17	19492851	19492960	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19492851:19492960:-	0	-
#Deleted in new
chr17	19492851	19492991	ENSG00000235979.8|AC004448.4|lncRNA|chr17:19492851:19492991:-	0	-
#Deleted in new
chr17	19495384	19495481	ENSG00000142494.13|SLC47A1|pc|chr17:19495384:19495481:+	0	+
#Deleted in new
chr17	19546985	19547043	ENSG00000142494.13|SLC47A1|pc|chr17:19546985:19547043:+	0	+
#Deleted in new
chr17	19564522	19564629	ENSG00000262769.1|AC025627.1|lncRNA|chr17:19564522:19564629:-	0	-
#Deleted in new
chr17	19570844	19571026	ENSG00000262769.1|AC025627.1|lncRNA|chr17:19570844:19571026:-	0	-
#Deleted in new
chr17	19578027	19578128	ENSG00000142494.13|SLC47A1|pc|chr17:19578027:19578128:+	0	+
#Deleted in new
chr17	19578743	19578904	ENSG00000142494.13|SLC47A1|pc|chr17:19578743:19578904:+	0	+
#Deleted in new
chr17	19578743	19578906	ENSG00000142494.13|SLC47A1|pc|chr17:19578743:19578906:+	0	+
#Deleted in new
chr17	19648135	19648265	ENSG00000072210.18|ALDH3A2|pc|chr17:19648135:19648265:+	0	+
#Deleted in new
chr17	19648145	19648265	ENSG00000072210.18|ALDH3A2|pc|chr17:19648145:19648265:+	0	+
#Deleted in new
chr17	19648173	19648265	ENSG00000072210.18|ALDH3A2|pc|chr17:19648173:19648265:+	0	+
#Partially deleted in new
chr17	19648525	19649124	ENSG00000072210.18|ALDH3A2|pc|chr17:19648525:19649124:+	0	+
#Deleted in new
chr17	19648722	19648843	ENSG00000072210.18|ALDH3A2|pc|chr17:19648722:19648843:+	0	+
#Deleted in new
chr17	19648750	19648830	ENSG00000072210.18|ALDH3A2|pc|chr17:19648750:19648830:+	0	+
#Deleted in new
chr17	19648750	19648877	ENSG00000072210.18|ALDH3A2|pc|chr17:19648750:19648877:+	0	+
#Deleted in new
chr17	19659572	19659699	ENSG00000072210.18|ALDH3A2|pc|chr17:19659572:19659699:+	0	+
#Deleted in new
chr17	19679951	19680039	ENSG00000180638.17|SLC47A2|pc|chr17:19679951:19680039:-	0	-
#Deleted in new
chr17	19704652	19704694	ENSG00000180638.17|SLC47A2|pc|chr17:19704652:19704694:-	0	-
#Partially deleted in new
chr17	19705010	19705503	ENSG00000180638.17|SLC47A2|pc|chr17:19705010:19705503:-	0	-
#Partially deleted in new
chr17	19708301	19708760	ENSG00000180638.17|SLC47A2|pc|chr17:19708301:19708760:-	0	-
#Deleted in new
chr17	19708715	19708760	ENSG00000180638.17|SLC47A2|pc|chr17:19708715:19708760:-	0	-
#Deleted in new
chr17	19712702	19712745	ENSG00000180638.17|SLC47A2|pc|chr17:19712702:19712745:-	0	-
#Partially deleted in new
chr17	19715723	19718837	ENSG00000180638.17|SLC47A2|pc|chr17:19715723:19718837:-	0	-
#Deleted in new
chr17	19716432	19716566	ENSG00000180638.17|SLC47A2|pc|chr17:19716432:19716566:-	0	-
#Deleted in new
chr17	19716432	19716573	ENSG00000180638.17|SLC47A2|pc|chr17:19716432:19716573:-	0	-
#Deleted in new
chr17	19716432	19716606	ENSG00000180638.17|SLC47A2|pc|chr17:19716432:19716606:-	0	-
#Deleted in new
chr17	19716432	19716652	ENSG00000180638.17|SLC47A2|pc|chr17:19716432:19716652:-	0	-
#Deleted in new
chr17	19716432	19716730	ENSG00000180638.17|SLC47A2|pc|chr17:19716432:19716730:-	0	-
#Deleted in new
chr17	19716432	19717443	ENSG00000180638.17|SLC47A2|pc|chr17:19716432:19717443:-	0	-
#Deleted in new
chr17	19718110	19718979	ENSG00000180638.17|SLC47A2|pc|chr17:19718110:19718979:-	0	-
#Deleted in new
chr17	19719058	19722428	ENSG00000262681.2|AC005722.2|lncRNA|chr17:19719058:19722428:+	0	+
#Deleted in new
chr17	19770829	19771067	ENSG00000083290.19|ULK2|pc|chr17:19770829:19771067:-	0	-
#Deleted in new
chr17	19810909	19811237	ENSG00000083290.19|ULK2|pc|chr17:19810909:19811237:-	0	-
#Deleted in new
chr17	19855746	19856164	ENSG00000279251.1|AC015726.3|lncRNA|chr17:19855746:19856164:+	0	+
#Deleted in new
chr17	19860940	19861055	ENSG00000083290.19|ULK2|pc|chr17:19860940:19861055:-	0	-
#Deleted in new
chr17	19929371	19929737	ENSG00000266126.1|AC005730.3|lncRNA|chr17:19929371:19929737:-	0	-
#Deleted in new
chr17	19967918	19968034	ENSG00000108599.14|AKAP10|pc|chr17:19967918:19968034:-	0	-
#Partially deleted in new
chr17	2001429	2001564	ENSG00000262445.3|AC099684.2|lncRNA|chr17:2001429:2001564:+	0	+
#Deleted in new
chr17	20017144	20017605	ENSG00000128487.16|SPECC1|pc|chr17:20017144:20017605:+	0	+
#Deleted in new
chr17	20017986	20018102	ENSG00000128487.16|SPECC1|pc|chr17:20017986:20018102:+	0	+
#Deleted in new
chr17	20057676	20057817	ENSG00000128487.16|SPECC1|pc|chr17:20057676:20057817:+	0	+
#Deleted in new
chr17	20322883	20322973	ENSG00000263494.1|AC004702.1|lncRNA|chr17:20322883:20322973:+	0	+
#Deleted in new
chr17	20323057	20323337	ENSG00000266839.3|AC008088.1|lncRNA|chr17:20323057:20323337:+	0	+
#Partially deleted in new
chr17	2038964	2039823	ENSG00000108963.17|DPH1|pc|chr17:2038964:2039823:+	0	+
#Deleted in new
chr17	20433205	20433257	ENSG00000265556.1|LINC01984|lncRNA|chr17:20433205:20433257:+	0	+
#Deleted in new
chr17	20434036	20434285	ENSG00000265556.1|LINC01984|lncRNA|chr17:20434036:20434285:+	0	+
#Deleted in new
chr17	20457377	20457563	ENSG00000170298.15|LGALS9B|pc|chr17:20457377:20457563:-	0	-
#Deleted in new
chr17	20530041	20530881	ENSG00000260907.1|AC015818.2|lncRNA|chr17:20530041:20530881:-	0	-
#Split in new
chr17	20545370	20549952	ENSG00000267075.1|AC015818.9|lncRNA|chr17:20545370:20549952:+	0	+
#Deleted in new
chr17	20576666	20576897	ENSG00000264422.1|AC015818.4|lncRNA|chr17:20576666:20576897:-	0	-
#Deleted in new
chr17	20578626	20578748	ENSG00000264422.1|AC015818.4|lncRNA|chr17:20578626:20578748:-	0	-
#Deleted in new
chr17	20580148	20580911	ENSG00000214819.1|CDRT15L2|pc|chr17:20580148:20580911:+	0	+
#Deleted in new
chr17	20631471	20631549	ENSG00000227685.1|LINC02088|lncRNA|chr17:20631471:20631549:-	0	-
#Deleted in new
chr17	20633036	20633234	ENSG00000227685.1|LINC02088|lncRNA|chr17:20633036:20633234:-	0	-
#Deleted in new
chr17	20836976	20837111	ENSG00000205212.3|CCDC144NL|pc|chr17:20836976:20837111:-	0	-
#Deleted in new
chr17	20855945	20857317	ENSG00000266369.1|AC090774.4|lncRNA|chr17:20855945:20857317:+	0	+
#Deleted in new
chr17	20863394	20865509	ENSG00000205212.3|CCDC144NL|pc|chr17:20863394:20865509:-	0	-
#Deleted in new
chr17	20865418	20865509	ENSG00000205212.3|CCDC144NL|pc|chr17:20865418:20865509:-	0	-
#Deleted in new
chr17	20866547	20866703	ENSG00000205212.3|CCDC144NL|pc|chr17:20866547:20866703:-	0	-
#Deleted in new
chr17	20866575	20866703	ENSG00000205212.3|CCDC144NL|pc|chr17:20866575:20866703:-	0	-
#Deleted in new
chr17	20866662	20866703	ENSG00000205212.3|CCDC144NL|pc|chr17:20866662:20866703:-	0	-
#Deleted in new
chr17	20867170	20867251	ENSG00000205212.3|CCDC144NL|pc|chr17:20867170:20867251:-	0	-
#Deleted in new
chr17	20867900	20868208	ENSG00000205212.3|CCDC144NL|pc|chr17:20867900:20868208:-	0	-
#Deleted in new
chr17	20867904	20868225	ENSG00000205212.3|CCDC144NL|pc|chr17:20867904:20868225:-	0	-
#Deleted in new
chr17	20868432	20868685	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20868432:20868685:+	0	+
#Deleted in new
chr17	20868496	20868685	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20868496:20868685:+	0	+
#Deleted in new
chr17	20868504	20868685	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20868504:20868685:+	0	+
#Deleted in new
chr17	20868542	20868685	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20868542:20868685:+	0	+
#Deleted in new
chr17	20868546	20868685	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20868546:20868685:+	0	+
#Deleted in new
chr17	20868549	20868685	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20868549:20868685:+	0	+
#Deleted in new
chr17	20887591	20887849	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20887591:20887849:+	0	+
#Deleted in new
chr17	20892229	20892432	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20892229:20892432:+	0	+
#Deleted in new
chr17	20898979	20899131	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20898979:20899131:+	0	+
#Partially deleted in new
chr17	20902217	20905230	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20902217:20905230:+	0	+
#Deleted in new
chr17	20921044	20921169	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20921044:20921169:+	0	+
#Deleted in new
chr17	20921151	20921169	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20921151:20921169:+	0	+
#Deleted in new
chr17	20924358	20924425	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20924358:20924425:+	0	+
#Deleted in new
chr17	20924358	20924833	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20924358:20924833:+	0	+
#Deleted in new
chr17	20929430	20930046	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20929430:20930046:+	0	+
#Deleted in new
chr17	20929754	20929967	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20929754:20929967:+	0	+
#Deleted in new
chr17	20929755	20929967	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20929755:20929967:+	0	+
#Deleted in new
chr17	20931592	20931771	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20931592:20931771:+	0	+
#Deleted in new
chr17	20932713	20932818	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20932713:20932818:+	0	+
#Deleted in new
chr17	20938092	20938522	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20938092:20938522:+	0	+
#Deleted in new
chr17	20938092	20939519	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20938092:20939519:+	0	+
#Deleted in new
chr17	20938519	20938660	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20938519:20938660:+	0	+
#Deleted in new
chr17	20938537	20938660	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20938537:20938660:+	0	+
#Deleted in new
chr17	20938550	20938660	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20938550:20938660:+	0	+
#Deleted in new
chr17	20938565	20938660	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20938565:20938660:+	0	+
#Deleted in new
chr17	20938577	20938660	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20938577:20938660:+	0	+
#Partially deleted in new
chr17	20955965	20956353	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20955965:20956353:+	0	+
#Deleted in new
chr17	20956193	20956353	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20956193:20956353:+	0	+
#Deleted in new
chr17	20956293	20956353	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20956293:20956353:+	0	+
#Duplicated in new
chr17	20958301	20958721	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20958301:20958721:+	0	+
#Deleted in new
chr17	20963721	20963787	ENSG00000264660.2|AC107926.1|lncRNA|chr17:20963721:20963787:+	0	+
#Deleted in new
chr17	20979683	20979752	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20979683:20979752:+	0	+
#Deleted in new
chr17	20979683	20980238	ENSG00000264660.2|AC107926.1|lncRNA|chr17:20979683:20980238:+	0	+
#Partially deleted in new
chr17	20981486	20982357	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20981486:20982357:+	0	+
#Deleted in new
chr17	20994089	20994142	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20994089:20994142:+	0	+
#Deleted in new
chr17	20994089	20994292	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20994089:20994292:+	0	+
#Deleted in new
chr17	20995486	20995552	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20995486:20995552:+	0	+
#Deleted in new
chr17	20996485	20996635	ENSG00000233098.8|CCDC144NL-AS1|lncRNA|chr17:20996485:20996635:+	0	+
#Partially deleted in new
chr17	21006507	21006987	ENSG00000124422.11|USP22|pc|chr17:21006507:21006987:-	0	-
#Deleted in new
chr17	2101121	2101560	ENSG00000262810.1|AC090617.5|lncRNA|chr17:2101121:2101560:+	0	+
#Deleted in new
chr17	2101541	2101667	ENSG00000279040.1|AC090617.7|lncRNA|chr17:2101541:2101667:+	0	+
#Deleted in new
chr17	21042219	21042273	ENSG00000124422.11|USP22|pc|chr17:21042219:21042273:-	0	-
#Deleted in new
chr17	21043625	21043760	ENSG00000124422.11|USP22|pc|chr17:21043625:21043760:-	0	-
#Deleted in new
chr17	21075555	21075957	ENSG00000236819.1|LINC01563|lncRNA|chr17:21075555:21075957:+	0	+
#Deleted in new
chr17	21090267	21090615	ENSG00000236819.1|LINC01563|lncRNA|chr17:21090267:21090615:+	0	+
#Deleted in new
chr17	21123363	21123444	ENSG00000109016.17|DHRS7B|pc|chr17:21123363:21123444:+	0	+
#Deleted in new
chr17	21166153	21166471	ENSG00000109016.17|DHRS7B|pc|chr17:21166153:21166471:+	0	+
#Deleted in new
chr17	2117625	2117772	ENSG00000279562.1|AC090617.9|lncRNA|chr17:2117625:2117772:+	0	+
#Deleted in new
chr17	21208391	21208539	ENSG00000178307.9|TMEM11|pc|chr17:21208391:21208539:-	0	-
#Deleted in new
chr17	21218088	21219120	ENSG00000235530.6|AC087294.1|lncRNA|chr17:21218088:21219120:+	0	+
#Deleted in new
chr17	21220364	21220468	ENSG00000235530.6|AC087294.1|lncRNA|chr17:21220364:21220468:+	0	+
#Deleted in new
chr17	21229772	21230035	ENSG00000235530.6|AC087294.1|lncRNA|chr17:21229772:21230035:+	0	+
#Deleted in new
chr17	21291436	21291717	ENSG00000034152.18|MAP2K3|pc|chr17:21291436:21291717:+	0	+
#Deleted in new
chr17	21291468	21291547	ENSG00000034152.18|MAP2K3|pc|chr17:21291468:21291547:+	0	+
#Deleted in new
chr17	21296085	21296143	ENSG00000034152.18|MAP2K3|pc|chr17:21296085:21296143:+	0	+
#Deleted in new
chr17	21296085	21296210	ENSG00000034152.18|MAP2K3|pc|chr17:21296085:21296210:+	0	+
#Partially deleted in new
chr17	21456512	21460215	ENSG00000265043.1|AC068418.2|lncRNA|chr17:21456512:21460215:-	0	-
#Deleted in new
chr17	21457433	21457700	ENSG00000264023.1|AC068418.1|lncRNA|chr17:21457433:21457700:+	0	+
#Deleted in new
chr17	21458852	21458989	ENSG00000264023.1|AC068418.1|lncRNA|chr17:21458852:21458989:+	0	+
#Deleted in new
chr17	214701	214762	ENSG00000181031.15|RPH3AL|pc|chr17:214701:214762:-	0	-
#Deleted in new
chr17	21519513	21519704	ENSG00000265265.1|AC233702.6|lncRNA|chr17:21519513:21519704:+	0	+
#Deleted in new
chr17	21521064	21521269	ENSG00000265265.1|AC233702.6|lncRNA|chr17:21521064:21521269:+	0	+
#Deleted in new
chr17	21524789	21524997	ENSG00000212719.10|C17orf51|pc|chr17:21524789:21524997:-	0	-
#Deleted in new
chr17	21526172	21526321	ENSG00000212719.10|C17orf51|pc|chr17:21526172:21526321:-	0	-
#Deleted in new
chr17	21527363	21527539	ENSG00000212719.10|C17orf51|pc|chr17:21527363:21527539:-	0	-
#Partially deleted in new
chr17	21528309	21535538	ENSG00000212719.10|C17orf51|pc|chr17:21528309:21535538:-	0	-
#Deleted in new
chr17	21529021	21529066	ENSG00000212719.10|C17orf51|pc|chr17:21529021:21529066:-	0	-
#Deleted in new
chr17	21529021	21529110	ENSG00000212719.10|C17orf51|pc|chr17:21529021:21529110:-	0	-
#Partially deleted in new
chr17	21532614	21534021	ENSG00000272780.5|AC233702.10|lncRNA|chr17:21532614:21534021:-	0	-
#Deleted in new
chr17	21532973	21533006	ENSG00000266466.1|AC233702.8|lncRNA|chr17:21532973:21533006:+	0	+
#Deleted in new
chr17	21546705	21546799	ENSG00000212719.10|C17orf51|pc|chr17:21546705:21546799:-	0	-
#Deleted in new
chr17	21550995	21551680	ENSG00000212719.10|C17orf51|pc|chr17:21550995:21551680:-	0	-
#Deleted in new
chr17	21573225	21573735	ENSG00000272780.5|AC233702.10|lncRNA|chr17:21573225:21573735:-	0	-
#Deleted in new
chr17	21574239	21574303	ENSG00000272780.5|AC233702.10|lncRNA|chr17:21574239:21574303:-	0	-
#Deleted in new
chr17	21574239	21574458	ENSG00000212719.10|C17orf51|pc|chr17:21574239:21574458:-	0	-
#Deleted in new
chr17	21574239	21574517	ENSG00000272780.5|AC233702.10|lncRNA|chr17:21574239:21574517:-	0	-
#Deleted in new
chr17	22234327	22234610	ENSG00000263609.1|LINC02002|lncRNA|chr17:22234327:22234610:-	0	-
#Deleted in new
chr17	22234329	22234613	ENSG00000263609.1|LINC02002|lncRNA|chr17:22234329:22234613:-	0	-
#Deleted in new
chr17	22240991	22241162	ENSG00000263609.1|LINC02002|lncRNA|chr17:22240991:22241162:-	0	-
#Deleted in new
chr17	22241265	22241505	ENSG00000263609.1|LINC02002|lncRNA|chr17:22241265:22241505:-	0	-
#Deleted in new
chr17	22244558	22244733	ENSG00000263609.1|LINC02002|lncRNA|chr17:22244558:22244733:-	0	-
#Deleted in new
chr17	22245056	22245399	ENSG00000263609.1|LINC02002|lncRNA|chr17:22245056:22245399:-	0	-
#Deleted in new
chr17	22245248	22245399	ENSG00000263609.1|LINC02002|lncRNA|chr17:22245248:22245399:-	0	-
#Deleted in new
chr17	22245825	22245930	ENSG00000263609.1|LINC02002|lncRNA|chr17:22245825:22245930:-	0	-
#Deleted in new
chr17	22254345	22254489	ENSG00000263609.1|LINC02002|lncRNA|chr17:22254345:22254489:-	0	-
#Deleted in new
chr17	22266151	22266329	ENSG00000263609.1|LINC02002|lncRNA|chr17:22266151:22266329:-	0	-
#Deleted in new
chr17	22266151	22266357	ENSG00000263609.1|LINC02002|lncRNA|chr17:22266151:22266357:-	0	-
#Deleted in new
chr17	22266151	22266362	ENSG00000263609.1|LINC02002|lncRNA|chr17:22266151:22266362:-	0	-
#Deleted in new
chr17	22266424	22266668	ENSG00000264956.1|AC138761.4|lncRNA|chr17:22266424:22266668:+	0	+
#Deleted in new
chr17	22285004	22285128	ENSG00000264956.1|AC138761.4|lncRNA|chr17:22285004:22285128:+	0	+
#Deleted in new
chr17	22285581	22288133	ENSG00000264956.1|AC138761.4|lncRNA|chr17:22285581:22288133:+	0	+
#Deleted in new
chr17	22286277	22287423	ENSG00000264956.1|AC138761.4|lncRNA|chr17:22286277:22287423:+	0	+
#Deleted in new
chr17	2229322	2229464	ENSG00000070366.13|SMG6|pc|chr17:2229322:2229464:-	0	-
#Deleted in new
chr17	22298690	22298968	ENSG00000178130.9|FAM27E5|lncRNA|chr17:22298690:22298968:+	0	+
#Deleted in new
chr17	22299374	22299385	ENSG00000178130.9|FAM27E5|lncRNA|chr17:22299374:22299385:+	0	+
#Deleted in new
chr17	22299489	22299694	ENSG00000178130.9|FAM27E5|lncRNA|chr17:22299489:22299694:+	0	+
#Deleted in new
chr17	22299489	22299893	ENSG00000178130.9|FAM27E5|lncRNA|chr17:22299489:22299893:+	0	+
#Deleted in new
chr17	2237298	2237391	ENSG00000070366.13|SMG6|pc|chr17:2237298:2237391:-	0	-
#Deleted in new
chr17	22406018	22406169	ENSG00000276399.1|FLJ36000|lncRNA|chr17:22406018:22406169:+	0	+
#Deleted in new
chr17	22410094	22413744	ENSG00000276399.1|FLJ36000|lncRNA|chr17:22410094:22413744:+	0	+
#Partially deleted in new
chr17	22420021	22424731	ENSG00000261020.1|AC132825.3|lncRNA|chr17:22420021:22424731:+	0	+
#Deleted in new
chr17	2255718	2256157	ENSG00000280242.1|AL450226.2|lncRNA|chr17:2255718:2256157:+	0	+
#Deleted in new
chr17	22676694	22676794	ENSG00000264262.1|AC131274.1|lncRNA|chr17:22676694:22676794:-	0	-
#Deleted in new
chr17	22692464	22692618	ENSG00000264262.1|AC131274.1|lncRNA|chr17:22692464:22692618:-	0	-
#Deleted in new
chr17	22692833	22692905	ENSG00000265114.1|AC131274.4|lncRNA|chr17:22692833:22692905:+	0	+
#Deleted in new
chr17	2309776	2309990	ENSG00000167720.12|SRR|pc|chr17:2309776:2309990:+	0	+
#Split in new
chr17	2389265	2392078	ENSG00000070444.14|MNT|pc|chr17:2389265:2392078:-	0	-
#Deleted in new
chr17	2393760	2393830	ENSG00000070444.14|MNT|pc|chr17:2393760:2393830:-	0	-
#Partially deleted in new
chr17	2415714	2415849	ENSG00000127804.12|METTL16|pc|chr17:2415714:2415849:-	0	-
#Partially deleted in new
chr17	2419659	2419769	ENSG00000127804.12|METTL16|pc|chr17:2419659:2419769:-	0	-
#Deleted in new
chr17	2424178	2424412	ENSG00000279872.1|AC006435.4|lncRNA|chr17:2424178:2424412:-	0	-
#Deleted in new
chr17	2459892	2459973	ENSG00000127804.12|METTL16|pc|chr17:2459892:2459973:-	0	-
#Deleted in new
chr17	2609538	2609568	ENSG00000007168.12|PAFAH1B1|pc|chr17:2609538:2609568:+	0	+
#Deleted in new
chr17	261688	261954	ENSG00000181031.15|RPH3AL|pc|chr17:261688:261954:-	0	-
#Deleted in new
chr17	2635382	2635510	ENSG00000007168.12|PAFAH1B1|pc|chr17:2635382:2635510:+	0	+
#Deleted in new
chr17	2639296	2642418	ENSG00000279432.1|AC015799.1|lncRNA|chr17:2639296:2642418:+	0	+
#Deleted in new
chr17	2667293	2667500	ENSG00000007168.12|PAFAH1B1|pc|chr17:2667293:2667500:+	0	+
#Deleted in new
chr17	2680843	2681130	ENSG00000007168.12|PAFAH1B1|pc|chr17:2680843:2681130:+	0	+
#Deleted in new
chr17	2688472	2688570	ENSG00000272911.1|AC005696.3|lncRNA|chr17:2688472:2688570:+	0	+
#Deleted in new
chr17	2688755	2688960	ENSG00000272911.1|AC005696.3|lncRNA|chr17:2688755:2688960:+	0	+
#Deleted in new
chr17	26989188	26989479	ENSG00000264734.1|AC069061.2|lncRNA|chr17:26989188:26989479:-	0	-
#Deleted in new
chr17	26991541	26991613	ENSG00000264734.1|AC069061.2|lncRNA|chr17:26991541:26991613:-	0	-
#Deleted in new
chr17	26998079	26998303	ENSG00000264734.1|AC069061.2|lncRNA|chr17:26998079:26998303:-	0	-
#Deleted in new
chr17	26999808	26999925	ENSG00000264734.1|AC069061.2|lncRNA|chr17:26999808:26999925:-	0	-
#Deleted in new
chr17	26999808	26999941	ENSG00000264734.1|AC069061.2|lncRNA|chr17:26999808:26999941:-	0	-
#Deleted in new
chr17	27237858	27238423	ENSG00000265246.1|AC129926.1|lncRNA|chr17:27237858:27238423:-	0	-
#Deleted in new
chr17	27297186	27297308	ENSG00000109046.14|WSB1|pc|chr17:27297186:27297308:+	0	+
#Deleted in new
chr17	27333255	27333427	ENSG00000266313.1|AC026254.4|lncRNA|chr17:27333255:27333427:+	0	+
#Deleted in new
chr17	27346927	27347062	ENSG00000266313.1|AC026254.4|lncRNA|chr17:27346927:27347062:+	0	+
#Deleted in new
chr17	27348344	27348491	ENSG00000266313.1|AC026254.4|lncRNA|chr17:27348344:27348491:+	0	+
#Partially deleted in new
chr17	27465111	27465541	ENSG00000265801.1|AC069366.2|lncRNA|chr17:27465111:27465541:+	0	+
#Deleted in new
chr17	27483657	27483834	ENSG00000141068.13|KSR1|pc|chr17:27483657:27483834:+	0	+
#Deleted in new
chr17	27483657	27483851	ENSG00000141068.13|KSR1|pc|chr17:27483657:27483851:+	0	+
#Deleted in new
chr17	27483657	27483855	ENSG00000141068.13|KSR1|pc|chr17:27483657:27483855:+	0	+
#Partially deleted in new
chr1	72749165	72749276	ENSG00000225087.1|AL583808.1|lncRNA|chr1:72749165:72749276:-	0	-
#Deleted in new
chr17	27611308	27611377	ENSG00000141068.13|KSR1|pc|chr17:27611308:27611377:+	0	+
#Deleted in new
chr17	27617738	27617742	ENSG00000141068.13|KSR1|pc|chr17:27617738:27617742:+	0	+
#Deleted in new
chr1	72765030	72765080	ENSG00000227016.3|AL583808.2|lncRNA|chr1:72765030:72765080:+	0	+
#Deleted in new
chr1	72780106	72780293	ENSG00000227016.3|AL583808.2|lncRNA|chr1:72780106:72780293:+	0	+
#Deleted in new
chr17	27874644	27874779	ENSG00000266527.1|AC005697.2|lncRNA|chr17:27874644:27874779:+	0	+
#Deleted in new
chr17	27892242	27892321	ENSG00000232859.9|LYRM9|pc|chr17:27892242:27892321:-	0	-
#Deleted in new
chr17	27892399	27892511	ENSG00000232859.9|LYRM9|pc|chr17:27892399:27892511:-	0	-
#Deleted in new
chr17	27930606	27930725	ENSG00000260019.1|LINC01992|lncRNA|chr17:27930606:27930725:-	0	-
#Deleted in new
chr17	27931536	27931693	ENSG00000260019.1|LINC01992|lncRNA|chr17:27931536:27931693:-	0	-
#Deleted in new
chr17	27974087	27974223	ENSG00000260019.1|LINC01992|lncRNA|chr17:27974087:27974223:-	0	-
#Deleted in new
chr17	28219284	28220005	ENSG00000267644.1|AC061975.8|lncRNA|chr17:28219284:28220005:+	0	+
#Deleted in new
chr17	28232589	28235281	ENSG00000267259.1|AC061975.7|lncRNA|chr17:28232589:28235281:-	0	-
#Deleted in new
chr17	28263633	28266369	ENSG00000260777.1|AC061975.1|lncRNA|chr17:28263633:28266369:-	0	-
#Deleted in new
chr17	28264861	28265551	ENSG00000264486.1|AC061975.4|lncRNA|chr17:28264861:28265551:+	0	+
#Partially deleted in new
chr17	28326533	28328225	ENSG00000109084.13|TMEM97|pc|chr17:28326533:28328225:+	0	+
#Partially deleted in new
chr17	28330110	28330228	ENSG00000109083.13|IFT20|pc|chr17:28330110:28330228:-	0	-
#Deleted in new
chr17	28332689	28332723	ENSG00000109083.13|IFT20|pc|chr17:28332689:28332723:-	0	-
#Partially deleted in new
chr17	28359519	28359611	ENSG00000244045.12|TMEM199|pc|chr17:28359519:28359611:+	0	+
#Deleted in new
chr17	28362563	28362859	ENSG00000265618.1|AC002094.2|lncRNA|chr17:28362563:28362859:-	0	-
#Deleted in new
chr17	28455751	28456109	ENSG00000258472.8|AC005726.2|pc|chr17:28455751:28456109:-	0	-
#Deleted in new
chr1	72850749	72850800	ENSG00000225087.1|AL583808.1|lncRNA|chr1:72850749:72850800:-	0	-
#Partially deleted in new
chr17	28563613	28563659	ENSG00000087111.20|PIGS|pc|chr17:28563613:28563659:-	0	-
#Partially deleted in new
chr17	28563613	28563661	ENSG00000087111.20|PIGS|pc|chr17:28563613:28563661:-	0	-
#Partially deleted in new
chr17	28599132	28599246	ENSG00000227543.4|SPAG5-AS1|lncRNA|chr17:28599132:28599246:+	0	+
#Deleted in new
chr17	28599155	28599246	ENSG00000227543.4|SPAG5-AS1|lncRNA|chr17:28599155:28599246:+	0	+
#Deleted in new
chr17	28599697	28599839	ENSG00000227543.4|SPAG5-AS1|lncRNA|chr17:28599697:28599839:+	0	+
#Deleted in new
chr17	28599697	28599855	ENSG00000227543.4|SPAG5-AS1|lncRNA|chr17:28599697:28599855:+	0	+
#Deleted in new
chr17	28601826	28602284	ENSG00000264608.1|AC005726.4|lncRNA|chr17:28601826:28602284:-	0	-
#Deleted in new
chr17	28603469	28604050	ENSG00000258472.8|AC005726.2|pc|chr17:28603469:28604050:-	0	-
#Deleted in new
chr17	28604050	28605215	ENSG00000258472.8|AC005726.2|pc|chr17:28604050:28605215:-	0	-
#Deleted in new
chr17	28604275	28605215	ENSG00000258472.8|AC005726.2|pc|chr17:28604275:28605215:-	0	-
#Deleted in new
chr17	28605045	28605215	ENSG00000258472.8|AC005726.2|pc|chr17:28605045:28605215:-	0	-
#Deleted in new
chr17	28606295	28606910	ENSG00000227543.4|SPAG5-AS1|lncRNA|chr17:28606295:28606910:+	0	+
#Deleted in new
chr17	28607962	28608547	ENSG00000265287.2|AC005726.6|lncRNA|chr17:28607962:28608547:+	0	+
#Deleted in new
chr17	28609232	28609730	ENSG00000265287.2|AC005726.6|lncRNA|chr17:28609232:28609730:+	0	+
#Deleted in new
chr17	28651485	28651542	ENSG00000132581.9|SDF2|pc|chr17:28651485:28651542:-	0	-
#Deleted in new
chr17	28651485	28651577	ENSG00000132581.9|SDF2|pc|chr17:28651485:28651577:-	0	-
#Deleted in new
chr17	28657753	28657839	ENSG00000132581.9|SDF2|pc|chr17:28657753:28657839:-	0	-
#Deleted in new
chr17	28670053	28670392	ENSG00000265205.1|AC010761.3|lncRNA|chr17:28670053:28670392:-	0	-
#Deleted in new
chr17	28670907	28671231	ENSG00000109111.14|SUPT6H|pc|chr17:28670907:28671231:+	0	+
#Deleted in new
chr17	28672644	28672804	ENSG00000265205.1|AC010761.3|lncRNA|chr17:28672644:28672804:-	0	-
#Deleted in new
chr17	28672756	28672858	ENSG00000109111.14|SUPT6H|pc|chr17:28672756:28672858:+	0	+
#Deleted in new
chr17	28707837	28707884	ENSG00000167525.13|PROCA1|pc|chr17:28707837:28707884:-	0	-
#Deleted in new
chr17	28721486	28721917	ENSG00000264577.1|AC010761.1|lncRNA|chr17:28721486:28721917:-	0	-
#Deleted in new
chr17	28727640	28727739	ENSG00000267729.1|AC010761.6|lncRNA|chr17:28727640:28727739:+	0	+
#Deleted in new
chr17	28727818	28727935	ENSG00000160606.10|TLCD1|pc|chr17:28727818:28727935:-	0	-
#Deleted in new
chr17	28732962	28732987	ENSG00000265073.1|AC010761.2|lncRNA|chr17:28732962:28732987:-	0	-
#Partially deleted in new
chr17	28742229	28742427	ENSG00000265073.1|AC010761.2|lncRNA|chr17:28742229:28742427:-	0	-
#Partially deleted in new
chr17	28742348	28742765	ENSG00000265073.1|AC010761.2|lncRNA|chr17:28742348:28742765:-	0	-
#Deleted in new
chr17	28742909	28743102	ENSG00000265073.1|AC010761.2|lncRNA|chr17:28742909:28743102:-	0	-
#Deleted in new
chr17	28761985	28762156	ENSG00000173065.13|FAM222B|pc|chr17:28761985:28762156:-	0	-
#Deleted in new
chr17	28777047	28777149	ENSG00000173065.13|FAM222B|pc|chr17:28777047:28777149:-	0	-
#Deleted in new
chr17	28777047	28777171	ENSG00000173065.13|FAM222B|pc|chr17:28777047:28777171:-	0	-
#Deleted in new
chr17	28790377	28790425	ENSG00000173065.13|FAM222B|pc|chr17:28790377:28790425:-	0	-
#Deleted in new
chr17	28834292	28834326	ENSG00000173065.13|FAM222B|pc|chr17:28834292:28834326:-	0	-
#Deleted in new
chr17	28892468	28892574	ENSG00000264304.1|AC024267.3|lncRNA|chr17:28892468:28892574:+	0	+
#Deleted in new
chr17	28928197	28928290	ENSG00000109118.13|PHF12|pc|chr17:28928197:28928290:-	0	-
#Deleted in new
chr17	28944502	28944569	ENSG00000109118.13|PHF12|pc|chr17:28944502:28944569:-	0	-
#Deleted in new
chr17	28944520	28944749	ENSG00000265845.2|AC024267.4|lncRNA|chr17:28944520:28944749:+	0	+
#Partially deleted in new
chr17	28944795	28945394	ENSG00000265908.1|AC024267.5|lncRNA|chr17:28944795:28945394:+	0	+
#Deleted in new
chr1	72898766	72898883	ENSG00000225087.1|AL583808.1|lncRNA|chr1:72898766:72898883:-	0	-
#Deleted in new
chr1	72899028	72899140	ENSG00000225087.1|AL583808.1|lncRNA|chr1:72899028:72899140:-	0	-
#Deleted in new
chr17	29012864	29012925	ENSG00000238007.1|AC024619.1|lncRNA|chr17:29012864:29012925:+	0	+
#Deleted in new
chr17	29040682	29040790	ENSG00000179761.11|PIPOX|pc|chr17:29040682:29040790:+	0	+
#Partially deleted in new
chr17	29046639	29046847	ENSG00000179761.11|PIPOX|pc|chr17:29046639:29046847:+	0	+
#Deleted in new
chr17	29352068	29352107	ENSG00000266111.2|AC068025.2|lncRNA|chr17:29352068:29352107:+	0	+
#Deleted in new
chr17	29403725	29404105	ENSG00000266111.2|AC068025.2|lncRNA|chr17:29403725:29404105:+	0	+
#Partially deleted in new
chr17	29510863	29514997	ENSG00000160551.11|TAOK1|pc|chr17:29510863:29514997:+	0	+
#Deleted in new
chr17	29568026	29568060	ENSG00000167543.15|TP53I13|pc|chr17:29568026:29568060:+	0	+
#Deleted in new
chr17	29568055	29568060	ENSG00000167543.15|TP53I13|pc|chr17:29568055:29568060:+	0	+
#Deleted in new
chr17	29570437	29570519	ENSG00000264290.1|AC104564.4|lncRNA|chr17:29570437:29570519:+	0	+
#Deleted in new
chr17	29599382	29599448	ENSG00000198720.12|ANKRD13B|pc|chr17:29599382:29599448:+	0	+
#Deleted in new
chr17	29599411	29599448	ENSG00000198720.12|ANKRD13B|pc|chr17:29599411:29599448:+	0	+
#Deleted in new
chr17	29673900	29674159	ENSG00000141298.17|SSH2|pc|chr17:29673900:29674159:-	0	-
#Deleted in new
chr17	29673913	29674159	ENSG00000141298.17|SSH2|pc|chr17:29673913:29674159:-	0	-
#Deleted in new
chr17	29707056	29707090	ENSG00000264031.1|ABHD15-AS1|lncRNA|chr17:29707056:29707090:+	0	+
#Deleted in new
chr17	29780460	29780587	ENSG00000263657.1|AC023389.1|lncRNA|chr17:29780460:29780587:+	0	+
#Deleted in new
chr17	29787478	29787836	ENSG00000263657.1|AC023389.1|lncRNA|chr17:29787478:29787836:+	0	+
#Partially deleted in new
chr1	72979013	72979314	ENSG00000280317.1|AL732618.1|lncRNA|chr1:72979013:72979314:-	0	-
#Deleted in new
chr17	29838926	29839142	ENSG00000141298.17|SSH2|pc|chr17:29838926:29839142:-	0	-
#Deleted in new
chr17	29863401	29864240	ENSG00000263477.1|AC104982.2|lncRNA|chr17:29863401:29864240:+	0	+
#Partially deleted in new
chr17	29866038	29866092	ENSG00000263477.1|AC104982.2|lncRNA|chr17:29866038:29866092:+	0	+
#Deleted in new
chr17	29950558	29950653	ENSG00000176927.15|EFCAB5|pc|chr17:29950558:29950653:+	0	+
#Deleted in new
chr17	30065633	30065677	ENSG00000265289.1|AC104996.1|lncRNA|chr17:30065633:30065677:-	0	-
#Deleted in new
chr17	30073082	30073198	ENSG00000176927.15|EFCAB5|pc|chr17:30073082:30073198:+	0	+
#Deleted in new
chr17	30073647	30073753	ENSG00000176927.15|EFCAB5|pc|chr17:30073647:30073753:+	0	+
#Deleted in new
chr17	30073647	30073999	ENSG00000176927.15|EFCAB5|pc|chr17:30073647:30073999:+	0	+
#Deleted in new
chr17	30073647	30074630	ENSG00000176927.15|EFCAB5|pc|chr17:30073647:30074630:+	0	+
#Deleted in new
chr17	30115520	30115623	ENSG00000126653.17|NSRP1|pc|chr17:30115520:30115623:+	0	+
#Deleted in new
chr17	30122428	30122648	ENSG00000265739.1|AC104984.3|lncRNA|chr17:30122428:30122648:-	0	-
#Deleted in new
chr17	30127858	30128163	ENSG00000126653.17|NSRP1|pc|chr17:30127858:30128163:+	0	+
#Deleted in new
chr17	30127858	30128236	ENSG00000126653.17|NSRP1|pc|chr17:30127858:30128236:+	0	+
#Deleted in new
chr17	30144515	30144790	ENSG00000266987.1|AC104984.6|lncRNA|chr17:30144515:30144790:-	0	-
#Deleted in new
chr17	30150101	30150666	ENSG00000126653.17|NSRP1|pc|chr17:30150101:30150666:+	0	+
#Deleted in new
chr17	30154403	30154615	ENSG00000126653.17|NSRP1|pc|chr17:30154403:30154615:+	0	+
#Deleted in new
chr17	30156539	30156662	ENSG00000126653.17|NSRP1|pc|chr17:30156539:30156662:+	0	+
#Deleted in new
chr17	30163066	30163162	ENSG00000126653.17|NSRP1|pc|chr17:30163066:30163162:+	0	+
#Deleted in new
chr17	30168813	30168925	ENSG00000126653.17|NSRP1|pc|chr17:30168813:30168925:+	0	+
#Partially deleted in new
chr17	30205990	30206468	ENSG00000264125.1|AC104984.1|lncRNA|chr17:30205990:30206468:+	0	+
#Deleted in new
chr17	30238740	30238800	ENSG00000266120.1|AC104984.4|lncRNA|chr17:30238740:30238800:+	0	+
#Deleted in new
chr17	30252073	30252237	ENSG00000266120.1|AC104984.4|lncRNA|chr17:30252073:30252237:+	0	+
#Partially deleted in new
chr17	30273277	30273479	ENSG00000108578.14|BLMH|pc|chr17:30273277:30273479:-	0	-
#Deleted in new
chr17	30450235	30450294	ENSG00000108582.11|CPD|pc|chr17:30450235:30450294:+	0	+
#Partially deleted in new
chr17	30456461	30456863	ENSG00000108582.11|CPD|pc|chr17:30456461:30456863:+	0	+
#Partially deleted in new
chr17	30482899	30483056	ENSG00000108587.15|GOSR1|pc|chr17:30482899:30483056:+	0	+
#Partially deleted in new
chr17	30484662	30485134	ENSG00000108587.15|GOSR1|pc|chr17:30484662:30485134:+	0	+
#Deleted in new
chr17	30495425	30495582	ENSG00000108587.15|GOSR1|pc|chr17:30495425:30495582:+	0	+
#Deleted in new
chr17	30550492	30550645	ENSG00000263860.1|AC011840.3|lncRNA|chr17:30550492:30550645:-	0	-
#Deleted in new
chr17	30551062	30551189	ENSG00000263860.1|AC011840.3|lncRNA|chr17:30551062:30551189:-	0	-
#Partially deleted in new
chr17	30551192	30551802	ENSG00000279431.1|AC011840.6|lncRNA|chr17:30551192:30551802:+	0	+
#Partially deleted in new
chr17	30557111	30558917	ENSG00000266733.5|TBC1D29|pc|chr17:30557111:30558917:+	0	+
#Deleted in new
chr17	30557731	30558502	ENSG00000266775.1|AC011840.5|lncRNA|chr17:30557731:30558502:-	0	-
#Deleted in new
chr17	30559023	30559726	ENSG00000266733.5|TBC1D29|pc|chr17:30559023:30559726:+	0	+
#Deleted in new
chr17	30559565	30559726	ENSG00000266733.5|TBC1D29|pc|chr17:30559565:30559726:+	0	+
#Deleted in new
chr17	30559565	30560716	ENSG00000266733.5|TBC1D29|pc|chr17:30559565:30560716:+	0	+
#Deleted in new
chr17	30560116	30560182	ENSG00000266733.5|TBC1D29|pc|chr17:30560116:30560182:+	0	+
#Deleted in new
chr17	30560616	30560716	ENSG00000266733.5|TBC1D29|pc|chr17:30560616:30560716:+	0	+
#Deleted in new
chr17	30562868	30562917	ENSG00000266733.5|TBC1D29|pc|chr17:30562868:30562917:+	0	+
#Deleted in new
chr17	30563199	30563474	ENSG00000266733.5|TBC1D29|pc|chr17:30563199:30563474:+	0	+
#Deleted in new
chr17	30563199	30563475	ENSG00000266733.5|TBC1D29|pc|chr17:30563199:30563475:+	0	+
#Deleted in new
chr17	30563199	30563493	ENSG00000266733.5|TBC1D29|pc|chr17:30563199:30563493:+	0	+
#Deleted in new
chr17	30576005	30577000	ENSG00000231421.7|AC011840.1|lncRNA|chr17:30576005:30577000:-	0	-
#Deleted in new
chr17	30576463	30579682	ENSG00000214719.11|AC005562.1|lncRNA|chr17:30576463:30579682:+	0	+
#Deleted in new
chr17	30576507	30576661	ENSG00000214719.11|AC005562.1|lncRNA|chr17:30576507:30576661:+	0	+
#Partially deleted in new
chr17	30633993	30635466	ENSG00000214719.11|AC005562.1|lncRNA|chr17:30633993:30635466:+	0	+
#Deleted in new
chr17	306415	306681	ENSG00000181031.15|RPH3AL|pc|chr17:306415:306681:-	0	-
#Deleted in new
chr17	30648366	30648456	ENSG00000214719.11|AC005562.1|lncRNA|chr17:30648366:30648456:+	0	+
#Deleted in new
chr17	30724981	30725181	ENSG00000279337.1|AC127024.7|lncRNA|chr17:30724981:30725181:-	0	-
#Deleted in new
chr17	30726304	30726663	ENSG00000265443.1|AC127024.3|lncRNA|chr17:30726304:30726663:-	0	-
#Deleted in new
chr17	30727463	30727564	ENSG00000265443.1|AC127024.3|lncRNA|chr17:30727463:30727564:-	0	-
#Deleted in new
chr17	30729468	30730227	ENSG00000263603.1|AC127024.2|lncRNA|chr17:30729468:30730227:+	0	+
#Deleted in new
chr17	30729942	30730203	ENSG00000263603.1|AC127024.2|lncRNA|chr17:30729942:30730203:+	0	+
#Deleted in new
chr17	30730361	30730391	ENSG00000263603.1|AC127024.2|lncRNA|chr17:30730361:30730391:+	0	+
#Deleted in new
chr17	30731097	30731202	ENSG00000263603.1|AC127024.2|lncRNA|chr17:30731097:30731202:+	0	+
#Deleted in new
chr17	30738181	30740275	ENSG00000280069.1|AC127024.8|lncRNA|chr17:30738181:30740275:+	0	+
#Deleted in new
chr17	30772362	30772437	ENSG00000176390.11|CRLF3|pc|chr17:30772362:30772437:-	0	-
#Deleted in new
chr17	30773406	30773497	ENSG00000176390.11|CRLF3|pc|chr17:30773406:30773497:-	0	-
#Deleted in new
chr17	30774091	30774344	ENSG00000176390.11|CRLF3|pc|chr17:30774091:30774344:-	0	-
#Deleted in new
chr17	30781492	30781570	ENSG00000265791.1|AC127024.4|lncRNA|chr17:30781492:30781570:-	0	-
#Partially deleted in new
chr17	30781991	30782221	ENSG00000265791.1|AC127024.4|lncRNA|chr17:30781991:30782221:-	0	-
#Deleted in new
chr17	30785106	30785157	ENSG00000176390.11|CRLF3|pc|chr17:30785106:30785157:-	0	-
#Deleted in new
chr17	30786321	30786491	ENSG00000176390.11|CRLF3|pc|chr17:30786321:30786491:-	0	-
#Deleted in new
chr17	30801028	30801420	ENSG00000176390.11|CRLF3|pc|chr17:30801028:30801420:-	0	-
#Partially deleted in new
chr17	30809574	30809986	ENSG00000176390.11|CRLF3|pc|chr17:30809574:30809986:-	0	-
#Deleted in new
chr17	30862695	30863028	ENSG00000265334.1|AC130324.2|lncRNA|chr17:30862695:30863028:-	0	-
#Deleted in new
chr17	30863920	30864130	ENSG00000263531.1|AC130324.1|lncRNA|chr17:30863920:30864130:-	0	-
#Deleted in new
chr17	30864319	30864940	ENSG00000263531.1|AC130324.1|lncRNA|chr17:30864319:30864940:-	0	-
#Deleted in new
chr17	30897335	30897760	ENSG00000172171.10|TEFM|pc|chr17:30897335:30897760:-	0	-
#Partially deleted in new
chr17	30906343	30906644	ENSG00000184060.10|ADAP2|pc|chr17:30906343:30906644:+	0	+
#Deleted in new
chr17	30921703	30921760	ENSG00000184060.10|ADAP2|pc|chr17:30921703:30921760:+	0	+
#Partially deleted in new
chr17	30957834	30959322	ENSG00000184060.10|ADAP2|pc|chr17:30957834:30959322:+	0	+
#Deleted in new
chr17	30964934	30965156	ENSG00000265743.1|AC138207.5|lncRNA|chr17:30964934:30965156:-	0	-
#Deleted in new
chr17	30965313	30965500	ENSG00000265743.1|AC138207.5|lncRNA|chr17:30965313:30965500:-	0	-
#Deleted in new
chr17	30968784	30969335	ENSG00000181481.13|RNF135|pc|chr17:30968784:30969335:+	0	+
#Deleted in new
chr17	30970277	30970307	ENSG00000181481.13|RNF135|pc|chr17:30970277:30970307:+	0	+
#Deleted in new
chr17	30971651	30973312	ENSG00000264456.1|AC138207.4|lncRNA|chr17:30971651:30973312:+	0	+
#Deleted in new
chr17	30978609	30979204	ENSG00000266340.1|AC138207.7|lncRNA|chr17:30978609:30979204:-	0	-
#Deleted in new
chr17	30980177	30980250	ENSG00000266340.1|AC138207.7|lncRNA|chr17:30980177:30980250:-	0	-
#Deleted in new
chr17	30993839	30993904	ENSG00000181481.13|RNF135|pc|chr17:30993839:30993904:+	0	+
#Deleted in new
chr17	30997456	30997528	ENSG00000181481.13|RNF135|pc|chr17:30997456:30997528:+	0	+
#Deleted in new
chr17	31090786	31090935	ENSG00000264107.1|AC138207.2|lncRNA|chr17:31090786:31090935:-	0	-
#Deleted in new
chr17	31093372	31093491	ENSG00000264107.1|AC138207.2|lncRNA|chr17:31093372:31093491:-	0	-
#Deleted in new
chr17	31128457	31128507	ENSG00000196712.17|NF1|pc|chr17:31128457:31128507:+	0	+
#Deleted in new
chr17	31133181	31133701	ENSG00000266371.1|AC079915.1|lncRNA|chr17:31133181:31133701:+	0	+
#Deleted in new
chr17	31136258	31138518	ENSG00000266371.1|AC079915.1|lncRNA|chr17:31136258:31138518:+	0	+
#Partially deleted in new
chr17	31182507	31183472	ENSG00000196712.17|NF1|pc|chr17:31182507:31183472:+	0	+
#Deleted in new
chr17	31278167	31278240	ENSG00000126861.4|OMG|pc|chr17:31278167:31278240:-	0	-
#Deleted in new
chr17	31307886	31307959	ENSG00000185862.6|EVI2B|pc|chr17:31307886:31307959:-	0	-
#Deleted in new
chr17	31307886	31307959	ENSG00000265118.5|AC134669.2|pc|chr17:31307886:31307959:-	0	-
#Deleted in new
chr17	31334663	31334730	ENSG00000196712.17|NF1|pc|chr17:31334663:31334730:+	0	+
#Deleted in new
chr17	3134968	3135190	ENSG00000261848.5|AC090282.1|lncRNA|chr17:3134968:3135190:-	0	-
#Deleted in new
chr17	31378647	31379023	ENSG00000196712.17|NF1|pc|chr17:31378647:31379023:+	0	+
#Deleted in new
chr17	31378887	31379023	ENSG00000196712.17|NF1|pc|chr17:31378887:31379023:+	0	+
#Deleted in new
chr17	31378890	31379023	ENSG00000196712.17|NF1|pc|chr17:31378890:31379023:+	0	+
#Deleted in new
chr17	31379105	31379357	ENSG00000196712.17|NF1|pc|chr17:31379105:31379357:+	0	+
#Deleted in new
chr17	31380140	31380227	ENSG00000196712.17|NF1|pc|chr17:31380140:31380227:+	0	+
#Deleted in new
chr17	31381872	31381887	ENSG00000196712.17|NF1|pc|chr17:31381872:31381887:+	0	+
#Deleted in new
chr17	31381872	31382106	ENSG00000196712.17|NF1|pc|chr17:31381872:31382106:+	0	+
#Deleted in new
chr17	31381872	31382116	ENSG00000196712.17|NF1|pc|chr17:31381872:31382116:+	0	+
#Partially deleted in new
chr17	31431558	31431692	ENSG00000131242.17|RAB11FIP4|pc|chr17:31431558:31431692:+	0	+
#Deleted in new
chr17	31448416	31448495	ENSG00000131242.17|RAB11FIP4|pc|chr17:31448416:31448495:+	0	+
#Partially deleted in new
chr17	31509076	31509481	ENSG00000131242.17|RAB11FIP4|pc|chr17:31509076:31509481:+	0	+
#Deleted in new
chr17	31583161	31583272	ENSG00000266877.1|AC007923.4|lncRNA|chr17:31583161:31583272:+	0	+
#Deleted in new
chr17	31590531	31590652	ENSG00000266877.1|AC007923.4|lncRNA|chr17:31590531:31590652:+	0	+
#Deleted in new
chr17	3160233	3160288	ENSG00000261848.5|AC090282.1|lncRNA|chr17:3160233:3160288:-	0	-
#Deleted in new
chr17	3163692	3163889	ENSG00000261848.5|AC090282.1|lncRNA|chr17:3163692:3163889:-	0	-
#Deleted in new
chr17	31637384	31637543	ENSG00000266877.1|AC007923.4|lncRNA|chr17:31637384:31637543:+	0	+
#Deleted in new
chr17	31762439	31762902	ENSG00000263567.1|AC007923.1|lncRNA|chr17:31762439:31762902:+	0	+
#Deleted in new
chr17	3176790	3177031	ENSG00000261848.5|AC090282.1|lncRNA|chr17:3176790:3177031:-	0	-
#Deleted in new
chr17	3176875	3176935	ENSG00000261848.5|AC090282.1|lncRNA|chr17:3176875:3176935:-	0	-
#Deleted in new
chr17	31769006	31769048	ENSG00000263567.1|AC007923.1|lncRNA|chr17:31769006:31769048:+	0	+
#Partially deleted in new
chr17	31831413	31831750	ENSG00000265046.1|AC004253.2|lncRNA|chr17:31831413:31831750:+	0	+
#Deleted in new
chr17	31866654	31866715	ENSG00000108651.9|UTP6|pc|chr17:31866654:31866715:-	0	-
#Duplicated in new
chr17	31873183	31873487	ENSG00000108651.9|UTP6|pc|chr17:31873183:31873487:-	0	-
#Deleted in new
chr17	31884892	31885038	ENSG00000108651.9|UTP6|pc|chr17:31884892:31885038:-	0	-
#Deleted in new
chr17	31886571	31886666	ENSG00000263990.1|AC004253.1|lncRNA|chr17:31886571:31886666:+	0	+
#Partially deleted in new
chr17	31887235	31888221	ENSG00000108651.9|UTP6|pc|chr17:31887235:31888221:-	0	-
#Partially deleted in new
chr17	31965694	31967589	ENSG00000178691.10|SUZ12|pc|chr17:31965694:31967589:+	0	+
#Deleted in new
chr17	32016924	32017220	ENSG00000185158.12|LRRC37B|pc|chr17:32016924:32017220:+	0	+
#Deleted in new
chr17	32028833	32028945	ENSG00000185158.12|LRRC37B|pc|chr17:32028833:32028945:+	0	+
#Deleted in new
chr17	32036023	32036276	ENSG00000185158.12|LRRC37B|pc|chr17:32036023:32036276:+	0	+
#Partially deleted in new
chr17	32051029	32053208	ENSG00000278867.1|AC090616.7|lncRNA|chr17:32051029:32053208:+	0	+
#Partially deleted in new
chr17	32053265	32053486	ENSG00000185158.12|LRRC37B|pc|chr17:32053265:32053486:+	0	+
#Partially deleted in new
chr17	32053265	32053498	ENSG00000185158.12|LRRC37B|pc|chr17:32053265:32053498:+	0	+
#Partially deleted in new
chr17	32053265	32053504	ENSG00000185158.12|LRRC37B|pc|chr17:32053265:32053504:+	0	+
#Partially deleted in new
chr17	32127594	32128454	ENSG00000277511.1|AC116407.2|lncRNA|chr17:32127594:32128454:+	0	+
#Deleted in new
chr17	321516	321631	ENSG00000262920.5|AC129507.4|lncRNA|chr17:321516:321631:+	0	+
#Duplicated in new
chr17	3215615	3218896	ENSG00000172146.2|OR1A1|pc|chr17:3215615:3218896:+	0	+
#Deleted in new
chr17	32159310	32160371	ENSG00000280033.1|AC116407.4|lncRNA|chr17:32159310:32160371:+	0	+
#Deleted in new
chr17	32178945	32180074	ENSG00000280020.1|AC116407.3|lncRNA|chr17:32178945:32180074:-	0	-
#Deleted in new
chr17	32179359	32179866	ENSG00000280020.1|AC116407.3|lncRNA|chr17:32179359:32179866:-	0	-
#Partially deleted in new
chr17	32207511	32207563	ENSG00000126858.16|RHOT1|pc|chr17:32207511:32207563:+	0	+
#Deleted in new
chr17	32221048	32221186	ENSG00000126858.16|RHOT1|pc|chr17:32221048:32221186:+	0	+
#Deleted in new
chr17	322261	322453	ENSG00000262920.5|AC129507.4|lncRNA|chr17:322261:322453:+	0	+
#Partially deleted in new
chr17	32280912	32280953	ENSG00000263674.1|AC026620.1|lncRNA|chr17:32280912:32280953:-	0	-
#Deleted in new
chr17	32329343	32329395	ENSG00000265139.1|AC005899.3|lncRNA|chr17:32329343:32329395:+	0	+
#Partially deleted in new
chr17	32351464	32351629	ENSG00000010244.18|ZNF207|pc|chr17:32351464:32351629:+	0	+
#Deleted in new
chr17	32408012	32408309	ENSG00000274341.1|AC005899.6|lncRNA|chr17:32408012:32408309:+	0	+
#Deleted in new
chr17	32410158	32410746	ENSG00000278668.1|AC005899.7|lncRNA|chr17:32410158:32410746:+	0	+
#Deleted in new
chr17	32411216	32411678	ENSG00000266385.1|AC005899.5|lncRNA|chr17:32411216:32411678:+	0	+
#Deleted in new
chr17	32412330	32412420	ENSG00000266385.1|AC005899.5|lncRNA|chr17:32412330:32412420:+	0	+
#Deleted in new
chr17	32423970	32424313	ENSG00000279762.3|AC005899.8|lncRNA|chr17:32423970:32424313:-	0	-
#Deleted in new
chr17	32426757	32426889	ENSG00000279762.3|AC005899.8|lncRNA|chr17:32426757:32426889:-	0	-
#Deleted in new
chr17	32430966	32431049	ENSG00000264083.1|AC005899.1|lncRNA|chr17:32430966:32431049:+	0	+
#Deleted in new
chr17	32432361	32432841	ENSG00000264083.1|AC005899.1|lncRNA|chr17:32432361:32432841:+	0	+
#Deleted in new
chr17	32436241	32436405	ENSG00000279762.3|AC005899.8|lncRNA|chr17:32436241:32436405:-	0	-
#Deleted in new
chr17	32438473	32438760	ENSG00000279762.3|AC005899.8|lncRNA|chr17:32438473:32438760:-	0	-
#Deleted in new
chr17	32496955	32497073	ENSG00000176658.16|MYO1D|pc|chr17:32496955:32497073:-	0	-
#Deleted in new
chr17	32523396	32523424	ENSG00000265222.1|AC079336.2|lncRNA|chr17:32523396:32523424:-	0	-
#Deleted in new
chr17	32529007	32529064	ENSG00000265337.1|AC079336.3|lncRNA|chr17:32529007:32529064:-	0	-
#Deleted in new
chr17	32529631	32530049	ENSG00000265337.1|AC079336.3|lncRNA|chr17:32529631:32530049:-	0	-
#Deleted in new
chr17	32531228	32531492	ENSG00000266599.1|AC079336.4|lncRNA|chr17:32531228:32531492:+	0	+
#Partially deleted in new
chr17	32602551	32602711	ENSG00000176658.16|MYO1D|pc|chr17:32602551:32602711:-	0	-
#Deleted in new
chr17	32632399	32632479	ENSG00000264458.1|AC025211.1|lncRNA|chr17:32632399:32632479:+	0	+
#Deleted in new
chr17	32684174	32684284	ENSG00000176658.16|MYO1D|pc|chr17:32684174:32684284:-	0	-
#Deleted in new
chr17	32686252	32686484	ENSG00000264458.1|AC025211.1|lncRNA|chr17:32686252:32686484:+	0	+
#Deleted in new
chr17	32727586	32727619	ENSG00000176658.16|MYO1D|pc|chr17:32727586:32727619:-	0	-
#Deleted in new
chr17	32734724	32734905	ENSG00000176658.16|MYO1D|pc|chr17:32734724:32734905:-	0	-
#Deleted in new
chr17	3279075	3279153	ENSG00000221882.3|OR3A2|pc|chr17:3279075:3279153:-	0	-
#Deleted in new
chr17	32794192	32794299	ENSG00000176658.16|MYO1D|pc|chr17:32794192:32794299:-	0	-
#Duplicated in new
chr17	3284398	3284551	ENSG00000221882.3|OR3A2|pc|chr17:3284398:3284551:-	0	-
#Deleted in new
chr17	32905661	32905779	ENSG00000236377.1|AC084809.2|lncRNA|chr17:32905661:32905779:+	0	+
#Deleted in new
chr17	32930899	32930971	ENSG00000006042.11|TMEM98|pc|chr17:32930899:32930971:+	0	+
#Deleted in new
chr17	32970375	32970493	ENSG00000141316.12|SPACA3|pc|chr17:32970375:32970493:+	0	+
#Deleted in new
chr17	32975826	32975944	ENSG00000141316.12|SPACA3|pc|chr17:32975826:32975944:+	0	+
#Deleted in new
chr1	73306169	73306274	ENSG00000233973.6|LINC01360|lncRNA|chr1:73306169:73306274:+	0	+
#Deleted in new
chr1	73306178	73306274	ENSG00000233973.6|LINC01360|lncRNA|chr1:73306178:73306274:+	0	+
#Deleted in new
chr1	73306228	73306274	ENSG00000233973.6|LINC01360|lncRNA|chr1:73306228:73306274:+	0	+
#Deleted in new
chr1	73306233	73306274	ENSG00000233973.6|LINC01360|lncRNA|chr1:73306233:73306274:+	0	+
#Deleted in new
chr1	73306238	73306274	ENSG00000233973.6|LINC01360|lncRNA|chr1:73306238:73306274:+	0	+
#Deleted in new
chr1	73310852	73310990	ENSG00000233973.6|LINC01360|lncRNA|chr1:73310852:73310990:+	0	+
#Partially deleted in new
chr17	331799	331866	ENSG00000262061.5|AC129507.1|lncRNA|chr17:331799:331866:+	0	+
#Deleted in new
chr1	73319467	73319661	ENSG00000233973.6|LINC01360|lncRNA|chr1:73319467:73319661:+	0	+
#Partially deleted in new
chr17	33290675	33290754	ENSG00000108684.14|ASIC2|pc|chr17:33290675:33290754:-	0	-
#Deleted in new
chr17	333205	333314	ENSG00000181031.15|RPH3AL|pc|chr17:333205:333314:-	0	-
#Deleted in new
chr17	3336028	3336126	ENSG00000221882.3|OR3A2|pc|chr17:3336028:3336126:-	0	-
#Deleted in new
chr17	3336032	3336126	ENSG00000221882.3|OR3A2|pc|chr17:3336032:3336126:-	0	-
#Deleted in new
chr1	73348133	73348312	ENSG00000233973.6|LINC01360|lncRNA|chr1:73348133:73348312:+	0	+
#Deleted in new
chr17	33580075	33580273	ENSG00000265125.5|AC011824.2|lncRNA|chr17:33580075:33580273:+	0	+
#Deleted in new
chr17	33581155	33581453	ENSG00000265125.5|AC011824.2|lncRNA|chr17:33581155:33581453:+	0	+
#Deleted in new
chr17	33581155	33581465	ENSG00000265125.5|AC011824.2|lncRNA|chr17:33581155:33581465:+	0	+
#Deleted in new
chr17	33623453	33623544	ENSG00000265125.5|AC011824.2|lncRNA|chr17:33623453:33623544:+	0	+
#Deleted in new
chr17	33627026	33627266	ENSG00000265115.1|AC011824.1|lncRNA|chr17:33627026:33627266:+	0	+
#Partially deleted in new
chr17	33793433	33794749	ENSG00000283417.1|AC024614.4|lncRNA|chr17:33793433:33794749:-	0	-
#Partially deleted in new
chr17	33827727	33828481	ENSG00000279668.2|AC024610.2|lncRNA|chr17:33827727:33828481:-	0	-
#Partially deleted in new
chr17	33827756	33828481	ENSG00000279668.2|AC024610.2|lncRNA|chr17:33827756:33828481:-	0	-
#Partially deleted in new
chr17	33827763	33828481	ENSG00000279668.2|AC024610.2|lncRNA|chr17:33827763:33828481:-	0	-
#Deleted in new
chr17	33931131	33931377	ENSG00000279668.2|AC024610.2|lncRNA|chr17:33931131:33931377:-	0	-
#Deleted in new
chr17	33932599	33932685	ENSG00000279668.2|AC024610.2|lncRNA|chr17:33932599:33932685:-	0	-
#Partially deleted in new
chr17	33936003	33936822	ENSG00000279668.2|AC024610.2|lncRNA|chr17:33936003:33936822:-	0	-
#Deleted in new
chr17	34082021	34082224	ENSG00000263485.1|AC004147.1|lncRNA|chr17:34082021:34082224:-	0	-
#Partially deleted in new
chr17	3411369	3411484	ENSG00000159961.2|OR3A3|pc|chr17:3411369:3411484:+	0	+
#Partially deleted in new
chr17	341152	341423	ENSG00000181031.15|RPH3AL|pc|chr17:341152:341423:-	0	-
#Partially deleted in new
chr17	34118346	34118882	ENSG00000265775.1|AC004147.5|lncRNA|chr17:34118346:34118882:-	0	-
#Deleted in new
chr17	34142946	34143033	ENSG00000264791.1|AC004147.3|lncRNA|chr17:34142946:34143033:+	0	+
#Deleted in new
chr17	34174559	34174723	ENSG00000261156.6|LINC01989|lncRNA|chr17:34174559:34174723:-	0	-
#Deleted in new
chr17	34174559	34174964	ENSG00000108684.14|ASIC2|pc|chr17:34174559:34174964:-	0	-
#Deleted in new
chr17	34183580	34183632	ENSG00000261156.6|LINC01989|lncRNA|chr17:34183580:34183632:-	0	-
#Deleted in new
chr17	34190574	34190668	ENSG00000261156.6|LINC01989|lncRNA|chr17:34190574:34190668:-	0	-
#Deleted in new
chr17	34195913	34195937	ENSG00000261156.6|LINC01989|lncRNA|chr17:34195913:34195937:-	0	-
#Split in new
chr17	3420579	3424070	ENSG00000159961.2|OR3A3|pc|chr17:3420579:3424070:+	0	+
#Partially deleted in new
chr17	3439922	3441844	ENSG00000280268.1|AC025125.1|lncRNA|chr17:3439922:3441844:-	0	-
#Deleted in new
chr17	34949454	34949715	ENSG00000132141.13|CCT6B|pc|chr17:34949454:34949715:-	0	-
#Partially deleted in new
chr17	3498890	3503419	ENSG00000108381.10|ASPA|pc|chr17:3498890:3503419:+	0	+
#Deleted in new
chr17	35007871	35008232	ENSG00000092871.16|RFFL|pc|chr17:35007871:35008232:-	0	-
#Deleted in new
chr17	35018659	35018991	ENSG00000273687.1|AC004223.4|lncRNA|chr17:35018659:35018991:+	0	+
#Deleted in new
chr17	35104852	35104990	ENSG00000185379.20|RAD51D|pc|chr17:35104852:35104990:-	0	-
#Deleted in new
chr17	35104935	35104990	ENSG00000185379.20|RAD51D|pc|chr17:35104935:35104990:-	0	-
#Deleted in new
chr17	35116858	35117037	ENSG00000185379.20|RAD51D|pc|chr17:35116858:35117037:-	0	-
#Deleted in new
chr17	35134942	35135059	ENSG00000073536.17|NLE1|pc|chr17:35134942:35135059:-	0	-
#Deleted in new
chr17	35166945	35167012	ENSG00000267782.1|AC022916.4|lncRNA|chr17:35166945:35167012:-	0	-
#Deleted in new
chr17	35188521	35188636	ENSG00000266981.1|AC022916.2|lncRNA|chr17:35188521:35188636:+	0	+
#Deleted in new
chr17	35231449	35232642	ENSG00000266947.1|AC022916.1|lncRNA|chr17:35231449:35232642:-	0	-
#Deleted in new
chr17	35232266	35232642	ENSG00000266947.1|AC022916.1|lncRNA|chr17:35232266:35232642:-	0	-
#Deleted in new
chr17	35237825	35237981	ENSG00000266947.1|AC022916.1|lncRNA|chr17:35237825:35237981:-	0	-
#Partially deleted in new
chr17	35241498	35242963	ENSG00000266947.1|AC022916.1|lncRNA|chr17:35241498:35242963:-	0	-
#Deleted in new
chr17	35313501	35313706	ENSG00000267364.1|AC022706.1|lncRNA|chr17:35313501:35313706:+	0	+
#Deleted in new
chr17	35313663	35313706	ENSG00000267364.1|AC022706.1|lncRNA|chr17:35313663:35313706:+	0	+
#Deleted in new
chr17	35321734	35321865	ENSG00000267364.1|AC022706.1|lncRNA|chr17:35321734:35321865:+	0	+
#Deleted in new
chr17	35321736	35321865	ENSG00000267364.1|AC022706.1|lncRNA|chr17:35321736:35321865:+	0	+
#Deleted in new
chr17	35323147	35323268	ENSG00000267364.1|AC022706.1|lncRNA|chr17:35323147:35323268:+	0	+
#Deleted in new
chr17	35323147	35323278	ENSG00000267364.1|AC022706.1|lncRNA|chr17:35323147:35323278:+	0	+
#Deleted in new
chr17	35324653	35324900	ENSG00000267364.1|AC022706.1|lncRNA|chr17:35324653:35324900:+	0	+
#Partially deleted in new
chr17	35350304	35353139	ENSG00000172716.16|SLFN11|pc|chr17:35350304:35353139:-	0	-
#Deleted in new
chr17	35366946	35367043	ENSG00000172716.16|SLFN11|pc|chr17:35366946:35367043:-	0	-
#Deleted in new
chr17	35366946	35367063	ENSG00000172716.16|SLFN11|pc|chr17:35366946:35367063:-	0	-
#Deleted in new
chr17	35366946	35367294	ENSG00000172716.16|SLFN11|pc|chr17:35366946:35367294:-	0	-
#Deleted in new
chr17	35367265	35367700	ENSG00000172716.16|SLFN11|pc|chr17:35367265:35367700:-	0	-
#Deleted in new
chr17	35367540	35367700	ENSG00000172716.16|SLFN11|pc|chr17:35367540:35367700:-	0	-
#Deleted in new
chr17	35367602	35367700	ENSG00000172716.16|SLFN11|pc|chr17:35367602:35367700:-	0	-
#Deleted in new
chr17	35367649	35367700	ENSG00000172716.16|SLFN11|pc|chr17:35367649:35367700:-	0	-
#Deleted in new
chr17	35373473	35373607	ENSG00000172716.16|SLFN11|pc|chr17:35373473:35373607:-	0	-
#Deleted in new
chr17	35373473	35373620	ENSG00000172716.16|SLFN11|pc|chr17:35373473:35373620:-	0	-
#Deleted in new
chr17	35373473	35373622	ENSG00000172716.16|SLFN11|pc|chr17:35373473:35373622:-	0	-
#Deleted in new
chr17	35373473	35373695	ENSG00000172716.16|SLFN11|pc|chr17:35373473:35373695:-	0	-
#Deleted in new
chr17	35373473	35373701	ENSG00000172716.16|SLFN11|pc|chr17:35373473:35373701:-	0	-
#Deleted in new
chr17	35373581	35373620	ENSG00000172716.16|SLFN11|pc|chr17:35373581:35373620:-	0	-
#Deleted in new
chr17	3539568	3539645	ENSG00000167723.14|TRPV3|pc|chr17:3539568:3539645:-	0	-
#Deleted in new
chr17	35400877	35401200	ENSG00000267711.1|AC060766.6|lncRNA|chr17:35400877:35401200:-	0	-
#Deleted in new
chr17	35402935	35403006	ENSG00000267711.1|AC060766.6|lncRNA|chr17:35402935:35403006:-	0	-
#Deleted in new
chr17	35403836	35404373	ENSG00000267547.1|AC060766.4|lncRNA|chr17:35403836:35404373:-	0	-
#Duplicated in new
chr17	35406683	35407591	ENSG00000267745.1|AC060766.7|lncRNA|chr17:35406683:35407591:-	0	-
#Partially deleted in new
chr17	35409464	35409768	ENSG00000267745.1|AC060766.7|lncRNA|chr17:35409464:35409768:-	0	-
#Partially deleted in new
chr17	35420630	35420765	ENSG00000172123.12|SLFN12|pc|chr17:35420630:35420765:-	0	-
#Deleted in new
chr17	35430470	35430592	ENSG00000172123.12|SLFN12|pc|chr17:35430470:35430592:-	0	-
#Deleted in new
chr17	35430470	35430613	ENSG00000172123.12|SLFN12|pc|chr17:35430470:35430613:-	0	-
#Deleted in new
chr17	35431882	35432074	ENSG00000172123.12|SLFN12|pc|chr17:35431882:35432074:-	0	-
#Deleted in new
chr17	35432187	35432257	ENSG00000172123.12|SLFN12|pc|chr17:35432187:35432257:-	0	-
#Deleted in new
chr17	35432187	35432524	ENSG00000172123.12|SLFN12|pc|chr17:35432187:35432524:-	0	-
#Deleted in new
chr17	35432904	35433145	ENSG00000172123.12|SLFN12|pc|chr17:35432904:35433145:-	0	-
#Deleted in new
chr17	35432904	35433165	ENSG00000172123.12|SLFN12|pc|chr17:35432904:35433165:-	0	-
#Deleted in new
chr17	35432904	35433196	ENSG00000172123.12|SLFN12|pc|chr17:35432904:35433196:-	0	-
#Deleted in new
chr17	35432904	35433199	ENSG00000172123.12|SLFN12|pc|chr17:35432904:35433199:-	0	-
#Deleted in new
chr17	35432904	35433283	ENSG00000172123.12|SLFN12|pc|chr17:35432904:35433283:-	0	-
#Partially deleted in new
chr17	35435095	35441366	ENSG00000154760.13|SLFN13|pc|chr17:35435095:35441366:-	0	-
#Partially deleted in new
chr17	35437542	35441366	ENSG00000154760.13|SLFN13|pc|chr17:35437542:35441366:-	0	-
#Partially deleted in new
chr17	35437544	35441366	ENSG00000154760.13|SLFN13|pc|chr17:35437544:35441366:-	0	-
#Deleted in new
chr17	35446716	35446753	ENSG00000154760.13|SLFN13|pc|chr17:35446716:35446753:-	0	-
#Deleted in new
chr17	35446839	35446932	ENSG00000154760.13|SLFN13|pc|chr17:35446839:35446932:-	0	-
#Deleted in new
chr17	35446985	35447414	ENSG00000154760.13|SLFN13|pc|chr17:35446985:35447414:-	0	-
#Deleted in new
chr17	35447267	35447394	ENSG00000154760.13|SLFN13|pc|chr17:35447267:35447394:-	0	-
#Deleted in new
chr17	35447267	35447414	ENSG00000154760.13|SLFN13|pc|chr17:35447267:35447414:-	0	-
#Deleted in new
chr17	35448272	35448369	ENSG00000154760.13|SLFN13|pc|chr17:35448272:35448369:-	0	-
#Deleted in new
chr17	35448721	35448755	ENSG00000154760.13|SLFN13|pc|chr17:35448721:35448755:-	0	-
#Deleted in new
chr17	35448721	35448764	ENSG00000154760.13|SLFN13|pc|chr17:35448721:35448764:-	0	-
#Deleted in new
chr17	35448721	35448782	ENSG00000154760.13|SLFN13|pc|chr17:35448721:35448782:-	0	-
#Deleted in new
chr17	35448721	35448785	ENSG00000154760.13|SLFN13|pc|chr17:35448721:35448785:-	0	-
#Deleted in new
chr17	35448721	35448837	ENSG00000154760.13|SLFN13|pc|chr17:35448721:35448837:-	0	-
#Deleted in new
chr17	35464248	35464662	ENSG00000205045.8|SLFN12L|pc|chr17:35464248:35464662:-	0	-
#Deleted in new
chr17	35464256	35464581	ENSG00000205045.8|SLFN12L|pc|chr17:35464256:35464581:-	0	-
#Deleted in new
chr17	3546644	3546715	ENSG00000167723.14|TRPV3|pc|chr17:3546644:3546715:-	0	-
#Deleted in new
chr17	3546644	3546804	ENSG00000167723.14|TRPV3|pc|chr17:3546644:3546804:-	0	-
#Split in new
chr17	35473688	35475485	ENSG00000205045.8|SLFN12L|pc|chr17:35473688:35475485:-	0	-
#Deleted in new
chr17	35477993	35478444	ENSG00000267349.1|AC015911.5|lncRNA|chr17:35477993:35478444:+	0	+
#Deleted in new
chr17	35478074	35478185	ENSG00000205045.8|SLFN12L|pc|chr17:35478074:35478185:-	0	-
#Deleted in new
chr17	35478074	35478226	ENSG00000205045.8|SLFN12L|pc|chr17:35478074:35478226:-	0	-
#Deleted in new
chr17	35478074	35478469	ENSG00000205045.8|SLFN12L|pc|chr17:35478074:35478469:-	0	-
#Deleted in new
chr17	35487725	35487857	ENSG00000205045.8|SLFN12L|pc|chr17:35487725:35487857:-	0	-
#Deleted in new
chr17	35510035	35510039	ENSG00000267074.1|AC015911.3|lncRNA|chr17:35510035:35510039:-	0	-
#Deleted in new
chr17	35510198	35510270	ENSG00000267074.1|AC015911.3|lncRNA|chr17:35510198:35510270:-	0	-
#Deleted in new
chr17	35537572	35537861	ENSG00000205045.8|SLFN12L|pc|chr17:35537572:35537861:-	0	-
#Deleted in new
chr17	35540038	35540342	ENSG00000267035.1|AC015911.2|lncRNA|chr17:35540038:35540342:-	0	-
#Deleted in new
chr17	35540705	35540797	ENSG00000267035.1|AC015911.2|lncRNA|chr17:35540705:35540797:-	0	-
#Deleted in new
chr17	35561538	35561644	ENSG00000267625.1|AC015911.9|lncRNA|chr17:35561538:35561644:-	0	-
#Deleted in new
chr17	35561998	35562077	ENSG00000267625.1|AC015911.9|lncRNA|chr17:35561998:35562077:-	0	-
#Partially deleted in new
chr17	35578685	35578863	ENSG00000108733.9|PEX12|pc|chr17:35578685:35578863:-	0	-
#Deleted in new
chr17	35600936	35600985	ENSG00000006125.17|AP2B1|pc|chr17:35600936:35600985:+	0	+
#Deleted in new
chr17	35600936	35601037	ENSG00000006125.17|AP2B1|pc|chr17:35600936:35601037:+	0	+
#Deleted in new
chr17	35600936	35601071	ENSG00000006125.17|AP2B1|pc|chr17:35600936:35601071:+	0	+
#Deleted in new
chr17	35600985	35601071	ENSG00000006125.17|AP2B1|pc|chr17:35600985:35601071:+	0	+
#Deleted in new
chr17	35757198	35757449	ENSG00000271392.1|AC006237.1|lncRNA|chr17:35757198:35757449:-	0	-
#Partially deleted in new
chr17	3577954	3578224	ENSG00000263338.1|AC027796.5|lncRNA|chr17:3577954:3578224:-	0	-
#Deleted in new
chr17	3578563	3578853	ENSG00000263338.1|AC027796.5|lncRNA|chr17:3578563:3578853:-	0	-
#Partially deleted in new
chr17	35816716	35816941	ENSG00000270871.1|AC015849.3|lncRNA|chr17:35816716:35816941:-	0	-
#Deleted in new
chr17	35818398	35818714	ENSG00000270894.1|AC015849.4|lncRNA|chr17:35818398:35818714:+	0	+
#Deleted in new
chr17	35823608	35823713	ENSG00000270894.1|AC015849.4|lncRNA|chr17:35823608:35823713:+	0	+
#Deleted in new
chr17	35830030	35830293	ENSG00000270871.1|AC015849.3|lncRNA|chr17:35830030:35830293:-	0	-
#Partially deleted in new
chr17	35871490	35872464	ENSG00000271503.5|CCL5|pc|chr17:35871490:35872464:-	0	-
#Deleted in new
chr17	35884381	35884535	ENSG00000270240.2|AC015849.1|lncRNA|chr17:35884381:35884535:+	0	+
#Deleted in new
chr17	35884686	35884779	ENSG00000270240.2|AC015849.1|lncRNA|chr17:35884686:35884779:+	0	+
#Deleted in new
chr17	35885507	35885612	ENSG00000270240.2|AC015849.1|lncRNA|chr17:35885507:35885612:+	0	+
#Deleted in new
chr17	35885561	35885858	ENSG00000270240.2|AC015849.1|lncRNA|chr17:35885561:35885858:+	0	+
#Deleted in new
chr17	35885705	35885863	ENSG00000270240.2|AC015849.1|lncRNA|chr17:35885705:35885863:+	0	+
#Deleted in new
chr17	35893706	35894323	ENSG00000270977.1|AC015849.5|lncRNA|chr17:35893706:35894323:-	0	-
#Deleted in new
chr17	35905037	35905313	ENSG00000270977.1|AC015849.5|lncRNA|chr17:35905037:35905313:-	0	-
#Split in new
chr17	35922154	35922675	ENSG00000278023.5|RDM1|pc|chr17:35922154:35922675:-	0	-
#Duplicated in new
chr17	35922654	35922675	ENSG00000278023.5|RDM1|pc|chr17:35922654:35922675:-	0	-
#Deleted in new
chr17	35978872	35978968	ENSG00000275152.4|CCL16|pc|chr17:35978872:35978968:-	0	-
#Deleted in new
chr17	35980357	35980493	ENSG00000275152.4|CCL16|pc|chr17:35980357:35980493:-	0	-
#Partially deleted in new
chr17	35983290	35983888	ENSG00000276409.4|CCL14|pc|chr17:35983290:35983888:-	0	-
#Partially deleted in new
chr17	35983293	35983888	ENSG00000276409.4|CCL14|pc|chr17:35983293:35983888:-	0	-
#Deleted in new
chr17	35983655	35983729	ENSG00000275431.1|AC244100.2|lncRNA|chr17:35983655:35983729:+	0	+
#Partially deleted in new
chr17	35984337	35987004	ENSG00000276409.4|CCL14|pc|chr17:35984337:35987004:-	0	-
#Deleted in new
chr17	35985584	35985725	ENSG00000275431.1|AC244100.2|lncRNA|chr17:35985584:35985725:+	0	+
#Deleted in new
chr17	35985747	35985795	ENSG00000275688.4|CCL15-CCL14|pc|chr17:35985747:35985795:-	0	-
#Deleted in new
chr17	35985747	35985795	ENSG00000276409.4|CCL14|pc|chr17:35985747:35985795:-	0	-
#Deleted in new
chr17	35986533	35990270	ENSG00000275431.1|AC244100.2|lncRNA|chr17:35986533:35990270:+	0	+
#Deleted in new
chr17	35986570	35986649	ENSG00000276409.4|CCL14|pc|chr17:35986570:35986649:-	0	-
#Deleted in new
chr17	35986570	35986675	ENSG00000276409.4|CCL14|pc|chr17:35986570:35986675:-	0	-
#Deleted in new
chr17	35986570	35986704	ENSG00000275688.4|CCL15-CCL14|pc|chr17:35986570:35986704:-	0	-
#Deleted in new
chr17	35986570	35986758	ENSG00000276409.4|CCL14|pc|chr17:35986570:35986758:-	0	-
#Deleted in new
chr17	35986613	35986710	ENSG00000275431.1|AC244100.2|lncRNA|chr17:35986613:35986710:+	0	+
#Partially deleted in new
chr17	35996439	35996926	ENSG00000275718.1|CCL15|pc|chr17:35996439:35996926:-	0	-
#Deleted in new
chr17	36009561	36009683	ENSG00000275944.1|AC244100.3|lncRNA|chr17:36009561:36009683:+	0	+
#Deleted in new
chr17	36010019	36010412	ENSG00000275944.1|AC244100.3|lncRNA|chr17:36010019:36010412:+	0	+
#Deleted in new
chr17	36010019	36011618	ENSG00000275944.1|AC244100.3|lncRNA|chr17:36010019:36011618:+	0	+
#Deleted in new
chr17	36012503	36012891	ENSG00000278690.1|AC244100.4|lncRNA|chr17:36012503:36012891:+	0	+
#Deleted in new
chr17	36073655	36073671	ENSG00000277089.4|AC243829.4|lncRNA|chr17:36073655:36073671:+	0	+
#Deleted in new
chr17	36074635	36074848	ENSG00000277089.4|AC243829.4|lncRNA|chr17:36074635:36074848:+	0	+
#Deleted in new
chr17	36075282	36075375	ENSG00000277089.4|AC243829.4|lncRNA|chr17:36075282:36075375:+	0	+
#Deleted in new
chr17	36076709	36076802	ENSG00000277089.4|AC243829.4|lncRNA|chr17:36076709:36076802:+	0	+
#Deleted in new
chr17	3608426	3608565	ENSG00000196689.11|TRPV1|pc|chr17:3608426:3608565:-	0	-
#Deleted in new
chr17	36116176	36116217	ENSG00000276241.1|AC243829.2|lncRNA|chr17:36116176:36116217:+	0	+
#Deleted in new
chr17	36147579	36147695	ENSG00000276241.1|AC243829.2|lncRNA|chr17:36147579:36147695:+	0	+
#Deleted in new
chr17	36165680	36166563	ENSG00000274808.5|TBC1D3B|pc|chr17:36165680:36166563:-	0	-
#Deleted in new
chr17	36167543	36167696	ENSG00000274808.5|TBC1D3B|pc|chr17:36167543:36167696:-	0	-
#Deleted in new
chr17	36168066	36168166	ENSG00000274808.5|TBC1D3B|pc|chr17:36168066:36168166:-	0	-
#Deleted in new
chr17	36168629	36168695	ENSG00000274808.5|TBC1D3B|pc|chr17:36168629:36168695:-	0	-
#Deleted in new
chr17	36169079	36169174	ENSG00000274808.5|TBC1D3B|pc|chr17:36169079:36169174:-	0	-
#Deleted in new
chr17	36170070	36170135	ENSG00000274808.5|TBC1D3B|pc|chr17:36170070:36170135:-	0	-
#Deleted in new
chr17	36170554	36170603	ENSG00000274808.5|TBC1D3B|pc|chr17:36170554:36170603:-	0	-
#Deleted in new
chr17	36172293	36172401	ENSG00000274808.5|TBC1D3B|pc|chr17:36172293:36172401:-	0	-
#Deleted in new
chr17	36172293	36172652	ENSG00000274808.5|TBC1D3B|pc|chr17:36172293:36172652:-	0	-
#Deleted in new
chr17	36172844	36172925	ENSG00000274808.5|TBC1D3B|pc|chr17:36172844:36172925:-	0	-
#Deleted in new
chr17	36172885	36172925	ENSG00000274808.5|TBC1D3B|pc|chr17:36172885:36172925:-	0	-
#Deleted in new
chr17	36173407	36173447	ENSG00000274808.5|TBC1D3B|pc|chr17:36173407:36173447:-	0	-
#Deleted in new
chr17	36173407	36173630	ENSG00000274808.5|TBC1D3B|pc|chr17:36173407:36173630:-	0	-
#Deleted in new
chr17	36174406	36174629	ENSG00000274808.5|TBC1D3B|pc|chr17:36174406:36174629:-	0	-
#Deleted in new
chr17	36174730	36174816	ENSG00000274808.5|TBC1D3B|pc|chr17:36174730:36174816:-	0	-
#Deleted in new
chr17	36174978	36175051	ENSG00000274808.5|TBC1D3B|pc|chr17:36174978:36175051:-	0	-
#Deleted in new
chr17	36176228	36176365	ENSG00000276241.1|AC243829.2|lncRNA|chr17:36176228:36176365:+	0	+
#Deleted in new
chr17	36176479	36176592	ENSG00000274808.5|TBC1D3B|pc|chr17:36176479:36176592:-	0	-
#Deleted in new
chr17	36176479	36176595	ENSG00000274808.5|TBC1D3B|pc|chr17:36176479:36176595:-	0	-
#Deleted in new
chr17	36176479	36176636	ENSG00000274808.5|TBC1D3B|pc|chr17:36176479:36176636:-	0	-
#Deleted in new
chr17	36177194	36177507	ENSG00000276241.1|AC243829.2|lncRNA|chr17:36177194:36177507:+	0	+
#Deleted in new
chr17	36177194	36177510	ENSG00000276241.1|AC243829.2|lncRNA|chr17:36177194:36177510:+	0	+
#Duplicated in new
chr17	36188422	36188882	ENSG00000274767.1|AC243829.1|lncRNA|chr17:36188422:36188882:+	0	+
#Deleted in new
chr17	36225245	36225369	ENSG00000278097.1|AC243829.5|lncRNA|chr17:36225245:36225369:-	0	-
#Deleted in new
chr17	36226684	36226807	ENSG00000278097.1|AC243829.5|lncRNA|chr17:36226684:36226807:-	0	-
#Deleted in new
chr17	36253455	36254522	ENSG00000274933.5|TBC1D3I|pc|chr17:36253455:36254522:-	0	-
#Deleted in new
chr17	36253638	36254522	ENSG00000274933.5|TBC1D3I|pc|chr17:36253638:36254522:-	0	-
#Deleted in new
chr17	36253953	36254522	ENSG00000274933.5|TBC1D3I|pc|chr17:36253953:36254522:-	0	-
#Deleted in new
chr17	36255484	36255637	ENSG00000274933.5|TBC1D3I|pc|chr17:36255484:36255637:-	0	-
#Deleted in new
chr17	36256007	36256107	ENSG00000274933.5|TBC1D3I|pc|chr17:36256007:36256107:-	0	-
#Deleted in new
chr17	36256570	36256636	ENSG00000274933.5|TBC1D3I|pc|chr17:36256570:36256636:-	0	-
#Deleted in new
chr17	36257020	36257115	ENSG00000274933.5|TBC1D3I|pc|chr17:36257020:36257115:-	0	-
#Deleted in new
chr17	36258492	36258541	ENSG00000274933.5|TBC1D3I|pc|chr17:36258492:36258541:-	0	-
#Deleted in new
chr17	36260228	36260336	ENSG00000274933.5|TBC1D3I|pc|chr17:36260228:36260336:-	0	-
#Deleted in new
chr17	36260779	36260860	ENSG00000274933.5|TBC1D3I|pc|chr17:36260779:36260860:-	0	-
#Deleted in new
chr17	36261342	36261382	ENSG00000274933.5|TBC1D3I|pc|chr17:36261342:36261382:-	0	-
#Deleted in new
chr17	36262665	36262751	ENSG00000274933.5|TBC1D3I|pc|chr17:36262665:36262751:-	0	-
#Deleted in new
chr17	36262913	36262985	ENSG00000274933.5|TBC1D3I|pc|chr17:36262913:36262985:-	0	-
#Deleted in new
chr17	36262913	36262986	ENSG00000274933.5|TBC1D3I|pc|chr17:36262913:36262986:-	0	-
#Deleted in new
chr17	36264414	36264514	ENSG00000274933.5|TBC1D3I|pc|chr17:36264414:36264514:-	0	-
#Deleted in new
chr17	36264414	36264553	ENSG00000274933.5|TBC1D3I|pc|chr17:36264414:36264553:-	0	-
#Deleted in new
chr17	36323883	36323982	ENSG00000260287.4|TBC1D3G|pc|chr17:36323883:36323982:+	0	+
#Deleted in new
chr17	36325410	36325483	ENSG00000260287.4|TBC1D3G|pc|chr17:36325410:36325483:+	0	+
#Deleted in new
chr17	36325645	36325731	ENSG00000260287.4|TBC1D3G|pc|chr17:36325645:36325731:+	0	+
#Deleted in new
chr17	36327014	36327054	ENSG00000260287.4|TBC1D3G|pc|chr17:36327014:36327054:+	0	+
#Deleted in new
chr17	36327536	36327617	ENSG00000260287.4|TBC1D3G|pc|chr17:36327536:36327617:+	0	+
#Deleted in new
chr17	36328060	36328168	ENSG00000260287.4|TBC1D3G|pc|chr17:36328060:36328168:+	0	+
#Deleted in new
chr17	36329855	36329904	ENSG00000260287.4|TBC1D3G|pc|chr17:36329855:36329904:+	0	+
#Deleted in new
chr17	36331281	36331376	ENSG00000260287.4|TBC1D3G|pc|chr17:36331281:36331376:+	0	+
#Deleted in new
chr17	36331760	36331826	ENSG00000260287.4|TBC1D3G|pc|chr17:36331760:36331826:+	0	+
#Deleted in new
chr17	36332289	36332389	ENSG00000260287.4|TBC1D3G|pc|chr17:36332289:36332389:+	0	+
#Deleted in new
chr17	36332759	36332912	ENSG00000260287.4|TBC1D3G|pc|chr17:36332759:36332912:+	0	+
#Deleted in new
chr17	36333875	36334759	ENSG00000260287.4|TBC1D3G|pc|chr17:36333875:36334759:+	0	+
#Deleted in new
chr17	36377530	36378414	ENSG00000274226.5|TBC1D3H|pc|chr17:36377530:36378414:-	0	-
#Deleted in new
chr17	36379395	36379548	ENSG00000274226.5|TBC1D3H|pc|chr17:36379395:36379548:-	0	-
#Deleted in new
chr17	36379918	36380018	ENSG00000274226.5|TBC1D3H|pc|chr17:36379918:36380018:-	0	-
#Deleted in new
chr17	36380481	36380547	ENSG00000274226.5|TBC1D3H|pc|chr17:36380481:36380547:-	0	-
#Deleted in new
chr17	36380931	36381026	ENSG00000274226.5|TBC1D3H|pc|chr17:36380931:36381026:-	0	-
#Deleted in new
chr17	36382403	36382452	ENSG00000274226.5|TBC1D3H|pc|chr17:36382403:36382452:-	0	-
#Deleted in new
chr17	36384139	36384247	ENSG00000274226.5|TBC1D3H|pc|chr17:36384139:36384247:-	0	-
#Deleted in new
chr17	36384690	36384771	ENSG00000274226.5|TBC1D3H|pc|chr17:36384690:36384771:-	0	-
#Deleted in new
chr17	36385253	36385293	ENSG00000274226.5|TBC1D3H|pc|chr17:36385253:36385293:-	0	-
#Deleted in new
chr17	36386575	36386661	ENSG00000274226.5|TBC1D3H|pc|chr17:36386575:36386661:-	0	-
#Deleted in new
chr17	36386823	36386896	ENSG00000274226.5|TBC1D3H|pc|chr17:36386823:36386896:-	0	-
#Deleted in new
chr17	36388324	36388423	ENSG00000274226.5|TBC1D3H|pc|chr17:36388324:36388423:-	0	-
#Deleted in new
chr17	36428617	36429496	ENSG00000275954.5|TBC1D3F|pc|chr17:36428617:36429496:-	0	-
#Deleted in new
chr17	36430477	36430630	ENSG00000275954.5|TBC1D3F|pc|chr17:36430477:36430630:-	0	-
#Deleted in new
chr17	36431000	36431100	ENSG00000275954.5|TBC1D3F|pc|chr17:36431000:36431100:-	0	-
#Deleted in new
chr17	36431563	36431629	ENSG00000275954.5|TBC1D3F|pc|chr17:36431563:36431629:-	0	-
#Deleted in new
chr17	36432013	36432108	ENSG00000275954.5|TBC1D3F|pc|chr17:36432013:36432108:-	0	-
#Deleted in new
chr17	36433485	36433534	ENSG00000275954.5|TBC1D3F|pc|chr17:36433485:36433534:-	0	-
#Deleted in new
chr17	36435224	36435332	ENSG00000275954.5|TBC1D3F|pc|chr17:36435224:36435332:-	0	-
#Deleted in new
chr17	36435775	36435856	ENSG00000275954.5|TBC1D3F|pc|chr17:36435775:36435856:-	0	-
#Deleted in new
chr17	36436338	36436378	ENSG00000275954.5|TBC1D3F|pc|chr17:36436338:36436378:-	0	-
#Deleted in new
chr17	36437661	36437747	ENSG00000275954.5|TBC1D3F|pc|chr17:36437661:36437747:-	0	-
#Deleted in new
chr17	36437909	36437982	ENSG00000275954.5|TBC1D3F|pc|chr17:36437909:36437982:-	0	-
#Deleted in new
chr17	36439410	36439566	ENSG00000275954.5|TBC1D3F|pc|chr17:36439410:36439566:-	0	-
#Partially deleted in new
chr17	36489157	36492899	ENSG00000273611.4|ZNHIT3|pc|chr17:36489157:36492899:+	0	+
#Deleted in new
chr17	36492223	36492459	ENSG00000273611.4|ZNHIT3|pc|chr17:36492223:36492459:+	0	+
#Deleted in new
chr17	36492229	36492459	ENSG00000273611.4|ZNHIT3|pc|chr17:36492229:36492459:+	0	+
#Deleted in new
chr17	36497605	36497917	ENSG00000273611.4|ZNHIT3|pc|chr17:36497605:36497917:+	0	+
#Partially deleted in new
chr17	36497605	36498148	ENSG00000273611.4|ZNHIT3|pc|chr17:36497605:36498148:+	0	+
#Partially deleted in new
chr17	36499669	36500959	ENSG00000278259.4|MYO19|pc|chr17:36499669:36500959:-	0	-
#Deleted in new
chr17	3650173	3650519	ENSG00000040531.14|CTNS|pc|chr17:3650173:3650519:+	0	+
#Deleted in new
chr17	36542080	36542165	ENSG00000278259.4|MYO19|pc|chr17:36542080:36542165:-	0	-
#Deleted in new
chr17	36542080	36542243	ENSG00000278259.4|MYO19|pc|chr17:36542080:36542243:-	0	-
#Partially deleted in new
chr17	36543125	36543435	ENSG00000278259.4|MYO19|pc|chr17:36543125:36543435:-	0	-
#Partially deleted in new
chr17	36581343	36582477	ENSG00000278311.4|GGNBP2|pc|chr17:36581343:36582477:+	0	+
#Deleted in new
chr17	3672198	3672493	ENSG00000083454.21|P2RX5|pc|chr17:3672198:3672493:-	0	-
#Partially deleted in new
chr17	3673226	3673877	ENSG00000083454.21|P2RX5|pc|chr17:3673226:3673877:-	0	-
#Partially deleted in new
chr17	3673229	3673877	ENSG00000083454.21|P2RX5|pc|chr17:3673229:3673877:-	0	-
#Partially deleted in new
chr17	3673244	3673877	ENSG00000083454.21|P2RX5|pc|chr17:3673244:3673877:-	0	-
#Partially deleted in new
chr17	3673250	3673877	ENSG00000083454.21|P2RX5|pc|chr17:3673250:3673877:-	0	-
#Deleted in new
chr17	3676178	3676326	ENSG00000083454.21|P2RX5|pc|chr17:3676178:3676326:-	0	-
#Deleted in new
chr17	3679589	3679784	ENSG00000083454.21|P2RX5|pc|chr17:3679589:3679784:-	0	-
#Deleted in new
chr17	3679589	3679784	ENSG00000257950.3|P2RX5-TAX1BP3|pc|chr17:3679589:3679784:-	0	-
#Deleted in new
chr17	3679610	3679784	ENSG00000083454.21|P2RX5|pc|chr17:3679610:3679784:-	0	-
#Deleted in new
chr1	7368941	7369116	ENSG00000237402.1|CAMTA1-IT1|lncRNA|chr1:7368941:7369116:+	0	+
#Deleted in new
chr1	73699750	73699843	ENSG00000223479.3|LINC02238|lncRNA|chr1:73699750:73699843:+	0	+
#Partially deleted in new
chr17	37034667	37034844	ENSG00000277579.1|AC244093.3|lncRNA|chr17:37034667:37034844:+	0	+
#Deleted in new
chr17	37043018	37043252	ENSG00000277579.1|AC244093.3|lncRNA|chr17:37043018:37043252:+	0	+
#Partially deleted in new
chr17	37052254	37052775	ENSG00000278638.1|AC244093.5|lncRNA|chr17:37052254:37052775:-	0	-
#Deleted in new
chr1	73709143	73709581	ENSG00000223479.3|LINC02238|lncRNA|chr1:73709143:73709581:+	0	+
#Deleted in new
chr1	73709367	73709425	ENSG00000223479.3|LINC02238|lncRNA|chr1:73709367:73709425:+	0	+
#Deleted in new
chr1	73714952	73715214	ENSG00000223479.3|LINC02238|lncRNA|chr1:73714952:73715214:+	0	+
#Deleted in new
chr17	3722388	3722488	ENSG00000262692.1|AC116914.2|lncRNA|chr17:3722388:3722488:+	0	+
#Partially deleted in new
chr17	3728104	3728474	ENSG00000083457.11|ITGAE|pc|chr17:3728104:3728474:-	0	-
#Deleted in new
chr17	37289417	37289528	ENSG00000278540.4|ACACA|pc|chr17:37289417:37289528:-	0	-
#Deleted in new
chr17	37345252	37345382	ENSG00000278540.4|ACACA|pc|chr17:37345252:37345382:-	0	-
#Deleted in new
chr17	37366942	37367060	ENSG00000278540.4|ACACA|pc|chr17:37366942:37367060:-	0	-
#Deleted in new
chr17	37369369	37369487	ENSG00000278540.4|ACACA|pc|chr17:37369369:37369487:-	0	-
#Deleted in new
chr17	37386885	37386944	ENSG00000276054.1|AC243654.3|lncRNA|chr17:37386885:37386944:+	0	+
#Partially deleted in new
chr17	37387250	37387926	ENSG00000276054.1|AC243654.3|lncRNA|chr17:37387250:37387926:+	0	+
#Partially deleted in new
chr17	3738860	3738953	ENSG00000083457.11|ITGAE|pc|chr17:3738860:3738953:-	0	-
#Deleted in new
chr17	37407935	37408000	ENSG00000273965.1|AC243654.1|lncRNA|chr17:37407935:37408000:-	0	-
#Deleted in new
chr17	37408366	37408594	ENSG00000273965.1|AC243654.1|lncRNA|chr17:37408366:37408594:-	0	-
#Deleted in new
chr17	37426350	37426666	ENSG00000276234.4|TADA2A|pc|chr17:37426350:37426666:+	0	+
#Deleted in new
chr17	37436386	37436501	ENSG00000276234.4|TADA2A|pc|chr17:37436386:37436501:+	0	+
#Partially deleted in new
chr17	37515444	37515568	ENSG00000275066.4|SYNRG|pc|chr17:37515444:37515568:-	0	-
#Deleted in new
chr17	37517186	37517342	ENSG00000275066.4|SYNRG|pc|chr17:37517186:37517342:-	0	-
#Partially deleted in new
chr17	37600362	37600988	ENSG00000275066.4|SYNRG|pc|chr17:37600362:37600988:-	0	-
#Deleted in new
chr17	37635550	37635604	ENSG00000278053.4|DDX52|pc|chr17:37635550:37635604:-	0	-
#Deleted in new
chr17	37639453	37639568	ENSG00000278053.4|DDX52|pc|chr17:37639453:37639568:-	0	-
#Deleted in new
chr17	37798893	37798961	ENSG00000275173.1|AC243571.1|lncRNA|chr17:37798893:37798961:-	0	-
#Deleted in new
chr17	37802100	37802327	ENSG00000275173.1|AC243571.1|lncRNA|chr17:37802100:37802327:-	0	-
#Deleted in new
chr17	37802605	37802788	ENSG00000275173.1|AC243571.1|lncRNA|chr17:37802605:37802788:-	0	-
#Deleted in new
chr17	37924414	37924570	ENSG00000273513.1|TBC1D3K|pc|chr17:37924414:37924570:+	0	+
#Deleted in new
chr17	37925998	37926071	ENSG00000273513.1|TBC1D3K|pc|chr17:37925998:37926071:+	0	+
#Deleted in new
chr17	37926233	37926319	ENSG00000273513.1|TBC1D3K|pc|chr17:37926233:37926319:+	0	+
#Deleted in new
chr17	37927602	37927642	ENSG00000273513.1|TBC1D3K|pc|chr17:37927602:37927642:+	0	+
#Deleted in new
chr17	37928124	37928205	ENSG00000273513.1|TBC1D3K|pc|chr17:37928124:37928205:+	0	+
#Deleted in new
chr17	37928648	37928756	ENSG00000273513.1|TBC1D3K|pc|chr17:37928648:37928756:+	0	+
#Deleted in new
chr17	37930449	37930498	ENSG00000273513.1|TBC1D3K|pc|chr17:37930449:37930498:+	0	+
#Deleted in new
chr17	37931875	37931970	ENSG00000273513.1|TBC1D3K|pc|chr17:37931875:37931970:+	0	+
#Deleted in new
chr17	37932354	37932420	ENSG00000273513.1|TBC1D3K|pc|chr17:37932354:37932420:+	0	+
#Deleted in new
chr17	37932883	37932983	ENSG00000273513.1|TBC1D3K|pc|chr17:37932883:37932983:+	0	+
#Deleted in new
chr17	37933353	37933506	ENSG00000273513.1|TBC1D3K|pc|chr17:37933353:37933506:+	0	+
#Deleted in new
chr17	37934487	37935365	ENSG00000273513.1|TBC1D3K|pc|chr17:37934487:37935365:+	0	+
#Deleted in new
chr17	37977971	37979038	ENSG00000274512.5|TBC1D3L|pc|chr17:37977971:37979038:-	0	-
#Deleted in new
chr17	37978154	37979038	ENSG00000274512.5|TBC1D3L|pc|chr17:37978154:37979038:-	0	-
#Deleted in new
chr17	37980019	37980172	ENSG00000274512.5|TBC1D3L|pc|chr17:37980019:37980172:-	0	-
#Deleted in new
chr17	37980542	37980642	ENSG00000274512.5|TBC1D3L|pc|chr17:37980542:37980642:-	0	-
#Deleted in new
chr17	37981105	37981171	ENSG00000274512.5|TBC1D3L|pc|chr17:37981105:37981171:-	0	-
#Deleted in new
chr17	37981555	37981650	ENSG00000274512.5|TBC1D3L|pc|chr17:37981555:37981650:-	0	-
#Deleted in new
chr17	37983027	37983076	ENSG00000274512.5|TBC1D3L|pc|chr17:37983027:37983076:-	0	-
#Deleted in new
chr17	37984763	37984871	ENSG00000274512.5|TBC1D3L|pc|chr17:37984763:37984871:-	0	-
#Deleted in new
chr17	37985314	37985395	ENSG00000274512.5|TBC1D3L|pc|chr17:37985314:37985395:-	0	-
#Deleted in new
chr17	37985877	37985917	ENSG00000274512.5|TBC1D3L|pc|chr17:37985877:37985917:-	0	-
#Deleted in new
chr17	37987200	37987286	ENSG00000274512.5|TBC1D3L|pc|chr17:37987200:37987286:-	0	-
#Deleted in new
chr17	37987448	37987520	ENSG00000274512.5|TBC1D3L|pc|chr17:37987448:37987520:-	0	-
#Deleted in new
chr17	37987448	37987521	ENSG00000274512.5|TBC1D3L|pc|chr17:37987448:37987521:-	0	-
#Deleted in new
chr17	37988949	37989048	ENSG00000274512.5|TBC1D3L|pc|chr17:37988949:37989048:-	0	-
#Deleted in new
chr17	38003975	38004131	ENSG00000274419.6|TBC1D3D|pc|chr17:38003975:38004131:+	0	+
#Deleted in new
chr17	38005559	38005632	ENSG00000274419.6|TBC1D3D|pc|chr17:38005559:38005632:+	0	+
#Deleted in new
chr17	38005794	38005880	ENSG00000274419.6|TBC1D3D|pc|chr17:38005794:38005880:+	0	+
#Deleted in new
chr17	38007163	38007203	ENSG00000274419.6|TBC1D3D|pc|chr17:38007163:38007203:+	0	+
#Deleted in new
chr17	38007685	38007766	ENSG00000274419.6|TBC1D3D|pc|chr17:38007685:38007766:+	0	+
#Deleted in new
chr17	38008209	38008317	ENSG00000274419.6|TBC1D3D|pc|chr17:38008209:38008317:+	0	+
#Deleted in new
chr17	38010004	38010053	ENSG00000274419.6|TBC1D3D|pc|chr17:38010004:38010053:+	0	+
#Deleted in new
chr17	38011430	38011525	ENSG00000274419.6|TBC1D3D|pc|chr17:38011430:38011525:+	0	+
#Deleted in new
chr17	38011909	38011975	ENSG00000274419.6|TBC1D3D|pc|chr17:38011909:38011975:+	0	+
#Deleted in new
chr17	38012438	38012538	ENSG00000274419.6|TBC1D3D|pc|chr17:38012438:38012538:+	0	+
#Deleted in new
chr17	38012908	38013061	ENSG00000274419.6|TBC1D3D|pc|chr17:38012908:38013061:+	0	+
#Deleted in new
chr17	38014024	38014902	ENSG00000274419.6|TBC1D3D|pc|chr17:38014024:38014902:+	0	+
#Deleted in new
chr17	38057692	38058576	ENSG00000278299.5|TBC1D3C|pc|chr17:38057692:38058576:-	0	-
#Deleted in new
chr17	38059557	38059710	ENSG00000278299.5|TBC1D3C|pc|chr17:38059557:38059710:-	0	-
#Deleted in new
chr17	38060080	38060180	ENSG00000278299.5|TBC1D3C|pc|chr17:38060080:38060180:-	0	-
#Deleted in new
chr17	38060643	38060709	ENSG00000278299.5|TBC1D3C|pc|chr17:38060643:38060709:-	0	-
#Deleted in new
chr17	38061094	38061189	ENSG00000278299.5|TBC1D3C|pc|chr17:38061094:38061189:-	0	-
#Deleted in new
chr17	38062566	38062615	ENSG00000278299.5|TBC1D3C|pc|chr17:38062566:38062615:-	0	-
#Deleted in new
chr17	38064309	38064417	ENSG00000278299.5|TBC1D3C|pc|chr17:38064309:38064417:-	0	-
#Deleted in new
chr17	38064860	38064941	ENSG00000278299.5|TBC1D3C|pc|chr17:38064860:38064941:-	0	-
#Deleted in new
chr17	38065423	38065463	ENSG00000278299.5|TBC1D3C|pc|chr17:38065423:38065463:-	0	-
#Deleted in new
chr17	38066746	38066832	ENSG00000278299.5|TBC1D3C|pc|chr17:38066746:38066832:-	0	-
#Deleted in new
chr17	38066994	38067067	ENSG00000278299.5|TBC1D3C|pc|chr17:38066994:38067067:-	0	-
#Deleted in new
chr17	38068495	38068592	ENSG00000278299.5|TBC1D3C|pc|chr17:38068495:38068592:-	0	-
#Deleted in new
chr17	38127950	38128066	ENSG00000278599.5|TBC1D3E|pc|chr17:38127950:38128066:+	0	+
#Deleted in new
chr17	38129494	38129567	ENSG00000278599.5|TBC1D3E|pc|chr17:38129494:38129567:+	0	+
#Deleted in new
chr17	38129729	38129815	ENSG00000278599.5|TBC1D3E|pc|chr17:38129729:38129815:+	0	+
#Deleted in new
chr17	38131098	38131138	ENSG00000278599.5|TBC1D3E|pc|chr17:38131098:38131138:+	0	+
#Deleted in new
chr17	38131620	38131701	ENSG00000278599.5|TBC1D3E|pc|chr17:38131620:38131701:+	0	+
#Deleted in new
chr17	38132144	38132252	ENSG00000278599.5|TBC1D3E|pc|chr17:38132144:38132252:+	0	+
#Deleted in new
chr17	38133946	38133995	ENSG00000278599.5|TBC1D3E|pc|chr17:38133946:38133995:+	0	+
#Deleted in new
chr17	38135372	38135467	ENSG00000278599.5|TBC1D3E|pc|chr17:38135372:38135467:+	0	+
#Deleted in new
chr17	38135851	38135917	ENSG00000278599.5|TBC1D3E|pc|chr17:38135851:38135917:+	0	+
#Deleted in new
chr17	38136380	38136480	ENSG00000278599.5|TBC1D3E|pc|chr17:38136380:38136480:+	0	+
#Deleted in new
chr17	38136850	38137003	ENSG00000278599.5|TBC1D3E|pc|chr17:38136850:38137003:+	0	+
#Deleted in new
chr17	38137984	38138862	ENSG00000278599.5|TBC1D3E|pc|chr17:38137984:38138862:+	0	+
#Deleted in new
chr17	38181658	38182542	ENSG00000274611.3|TBC1D3|pc|chr17:38181658:38182542:-	0	-
#Deleted in new
chr17	38183523	38183676	ENSG00000274611.3|TBC1D3|pc|chr17:38183523:38183676:-	0	-
#Deleted in new
chr17	38184046	38184146	ENSG00000274611.3|TBC1D3|pc|chr17:38184046:38184146:-	0	-
#Deleted in new
chr17	38184609	38184675	ENSG00000274611.3|TBC1D3|pc|chr17:38184609:38184675:-	0	-
#Deleted in new
chr17	38185059	38185154	ENSG00000274611.3|TBC1D3|pc|chr17:38185059:38185154:-	0	-
#Deleted in new
chr17	38186531	38186580	ENSG00000274611.3|TBC1D3|pc|chr17:38186531:38186580:-	0	-
#Deleted in new
chr17	38188272	38188380	ENSG00000274611.3|TBC1D3|pc|chr17:38188272:38188380:-	0	-
#Deleted in new
chr17	38188823	38188904	ENSG00000274611.3|TBC1D3|pc|chr17:38188823:38188904:-	0	-
#Deleted in new
chr17	38189386	38189426	ENSG00000274611.3|TBC1D3|pc|chr17:38189386:38189426:-	0	-
#Deleted in new
chr17	38190709	38190795	ENSG00000274611.3|TBC1D3|pc|chr17:38190709:38190795:-	0	-
#Deleted in new
chr17	38190957	38191030	ENSG00000274611.3|TBC1D3|pc|chr17:38190957:38191030:-	0	-
#Deleted in new
chr17	38192444	38192541	ENSG00000274611.3|TBC1D3|pc|chr17:38192444:38192541:-	0	-
#Deleted in new
chr17	3822503	3822898	ENSG00000074356.16|NCBP3|pc|chr17:3822503:3822898:-	0	-
#Partially deleted in new
chr17	3823792	3825050	ENSG00000074356.16|NCBP3|pc|chr17:3823792:3825050:-	0	-
#Deleted in new
chr17	3824059	3824092	ENSG00000074356.16|NCBP3|pc|chr17:3824059:3824092:-	0	-
#Deleted in new
chr1	7382486	7382723	ENSG00000237728.2|Z97987.1|lncRNA|chr1:7382486:7382723:-	0	-
#Deleted in new
chr17	38375839	38375962	ENSG00000274211.4|SOCS7|pc|chr17:38375839:38375962:+	0	+
#Deleted in new
chr17	38450393	38450723	ENSG00000276170.4|AC244153.1|lncRNA|chr17:38450393:38450723:-	0	-
#Deleted in new
chr17	38450587	38450723	ENSG00000276170.4|AC244153.1|lncRNA|chr17:38450587:38450723:-	0	-
#Deleted in new
chr17	38450625	38450723	ENSG00000276170.4|AC244153.1|lncRNA|chr17:38450625:38450723:-	0	-
#Partially deleted in new
chr17	38727832	38728198	ENSG00000279119.1|AC006449.7|lncRNA|chr17:38727832:38728198:-	0	-
#Deleted in new
chr17	38776603	38776625	ENSG00000276293.4|PIP4K2B|pc|chr17:38776603:38776625:-	0	-
#Deleted in new
chr17	38779851	38779930	ENSG00000276293.4|PIP4K2B|pc|chr17:38779851:38779930:-	0	-
#Deleted in new
chr17	38792725	38792882	ENSG00000276293.4|PIP4K2B|pc|chr17:38792725:38792882:-	0	-
#Deleted in new
chr17	38815624	38815735	ENSG00000273559.4|CWC25|pc|chr17:38815624:38815735:-	0	-
#Deleted in new
chr17	38815624	38815741	ENSG00000273559.4|CWC25|pc|chr17:38815624:38815741:-	0	-
#Partially deleted in new
chr1	7388182	7388493	ENSG00000237728.2|Z97987.1|lncRNA|chr1:7388182:7388493:-	0	-
#Deleted in new
chr17	38847864	38848039	ENSG00000125691.12|RPL23|pc|chr17:38847864:38848039:-	0	-
#Deleted in new
chr17	38847864	38848057	ENSG00000125691.12|RPL23|pc|chr17:38847864:38848057:-	0	-
#Partially deleted in new
chr17	38847866	38850214	ENSG00000125691.12|RPL23|pc|chr17:38847866:38850214:-	0	-
#Partially deleted in new
chr17	38850080	38852732	ENSG00000125691.12|RPL23|pc|chr17:38850080:38852732:-	0	-
#Deleted in new
chr17	38896901	38897071	ENSG00000002834.17|LASP1|pc|chr17:38896901:38897071:+	0	+
#Deleted in new
chr17	38903703	38903944	ENSG00000263466.1|AC006441.1|lncRNA|chr17:38903703:38903944:-	0	-
#Deleted in new
chr17	38904404	38904600	ENSG00000263466.1|AC006441.1|lncRNA|chr17:38904404:38904600:-	0	-
#Partially deleted in new
chr17	38915042	38916837	ENSG00000002834.17|LASP1|pc|chr17:38915042:38916837:+	0	+
#Deleted in new
chr1	7389339	7389419	ENSG00000237728.2|Z97987.1|lncRNA|chr1:7389339:7389419:-	0	-
#Deleted in new
chr1	7389339	7389439	ENSG00000237728.2|Z97987.1|lncRNA|chr1:7389339:7389439:-	0	-
#Partially deleted in new
chr17	3894226	3894891	ENSG00000004660.14|CAMKK1|pc|chr17:3894226:3894891:-	0	-
#Deleted in new
chr1	7389658	7389754	ENSG00000237728.2|Z97987.1|lncRNA|chr1:7389658:7389754:-	0	-
#Deleted in new
chr17	39003247	39003719	ENSG00000266588.1|AC006441.4|lncRNA|chr17:39003247:39003719:-	0	-
#Deleted in new
chr17	39012932	39013031	ENSG00000266588.1|AC006441.4|lncRNA|chr17:39012932:39013031:-	0	-
#Deleted in new
chr17	39012932	39013032	ENSG00000266588.1|AC006441.4|lncRNA|chr17:39012932:39013032:-	0	-
#Deleted in new
chr17	39081249	39081449	ENSG00000161381.13|PLXDC1|pc|chr17:39081249:39081449:-	0	-
#Deleted in new
chr17	39112089	39112177	ENSG00000161381.13|PLXDC1|pc|chr17:39112089:39112177:-	0	-
#Deleted in new
chr17	39126904	39127004	ENSG00000161381.13|PLXDC1|pc|chr17:39126904:39127004:-	0	-
#Deleted in new
chr17	39126938	39127004	ENSG00000161381.13|PLXDC1|pc|chr17:39126938:39127004:-	0	-
#Deleted in new
chr17	39131755	39132037	ENSG00000161381.13|PLXDC1|pc|chr17:39131755:39132037:-	0	-
#Deleted in new
chr17	39137430	39137555	ENSG00000161381.13|PLXDC1|pc|chr17:39137430:39137555:-	0	-
#Deleted in new
chr17	39160197	39160317	ENSG00000141748.12|ARL5C|pc|chr17:39160197:39160317:-	0	-
#Deleted in new
chr17	39164078	39164289	ENSG00000141748.12|ARL5C|pc|chr17:39164078:39164289:-	0	-
#Deleted in new
chr17	39166509	39166617	ENSG00000141748.12|ARL5C|pc|chr17:39166509:39166617:-	0	-
#Deleted in new
chr17	39166940	39167065	ENSG00000141748.12|ARL5C|pc|chr17:39166940:39167065:-	0	-
#Partially deleted in new
chr17	39259130	39259296	ENSG00000108306.11|FBXL20|pc|chr17:39259130:39259296:-	0	-
#Partially deleted in new
chr17	3927980	3928038	ENSG00000074370.17|ATP2A3|pc|chr17:3927980:3928038:-	0	-
#Partially deleted in new
chr17	39427445	39427790	ENSG00000125686.11|MED1|pc|chr17:39427445:39427790:-	0	-
#Deleted in new
chr17	39445410	39445569	ENSG00000125686.11|MED1|pc|chr17:39445410:39445569:-	0	-
#Deleted in new
chr17	39688695	39688800	ENSG00000141736.13|ERBB2|pc|chr17:39688695:39688800:+	0	+
#Deleted in new
chr17	39693260	39693325	ENSG00000141736.13|ERBB2|pc|chr17:39693260:39693325:+	0	+
#Partially deleted in new
chr17	39694930	39695181	ENSG00000141736.13|ERBB2|pc|chr17:39694930:39695181:+	0	+
#Deleted in new
chr17	39694987	39695181	ENSG00000141736.13|ERBB2|pc|chr17:39694987:39695181:+	0	+
#Deleted in new
chr17	39713152	39713269	ENSG00000141736.13|ERBB2|pc|chr17:39713152:39713269:+	0	+
#Deleted in new
chr17	3981442	3981899	ENSG00000263312.1|LINC01975|lncRNA|chr17:3981442:3981899:+	0	+
#Partially deleted in new
chr17	39905846	39905938	ENSG00000073605.18|GSDMB|pc|chr17:39905846:39905938:-	0	-
#Deleted in new
chr17	39905964	39905985	ENSG00000073605.18|GSDMB|pc|chr17:39905964:39905985:-	0	-
#Deleted in new
chr17	39912325	39912343	ENSG00000073605.18|GSDMB|pc|chr17:39912325:39912343:-	0	-
#Deleted in new
chr17	39912325	39912497	ENSG00000073605.18|GSDMB|pc|chr17:39912325:39912497:-	0	-
#Deleted in new
chr17	39917081	39917147	ENSG00000073605.18|GSDMB|pc|chr17:39917081:39917147:-	0	-
#Deleted in new
chr17	39917081	39917316	ENSG00000073605.18|GSDMB|pc|chr17:39917081:39917316:-	0	-
#Deleted in new
chr17	39917081	39917321	ENSG00000073605.18|GSDMB|pc|chr17:39917081:39917321:-	0	-
#Deleted in new
chr17	39917081	39917330	ENSG00000073605.18|GSDMB|pc|chr17:39917081:39917330:-	0	-
#Deleted in new
chr17	39917081	39917540	ENSG00000073605.18|GSDMB|pc|chr17:39917081:39917540:-	0	-
#Deleted in new
chr17	39918533	39918590	ENSG00000073605.18|GSDMB|pc|chr17:39918533:39918590:-	0	-
#Deleted in new
chr17	39918533	39918635	ENSG00000073605.18|GSDMB|pc|chr17:39918533:39918635:-	0	-
#Deleted in new
chr17	39918533	39918650	ENSG00000073605.18|GSDMB|pc|chr17:39918533:39918650:-	0	-
#Partially deleted in new
chr17	39934610	39934724	ENSG00000264968.1|AC090844.2|lncRNA|chr17:39934610:39934724:+	0	+
#Deleted in new
chr17	39935801	39935894	ENSG00000264968.1|AC090844.2|lncRNA|chr17:39935801:39935894:+	0	+
#Deleted in new
chr17	39941473	39941549	ENSG00000204913.5|LRRC3C|pc|chr17:39941473:39941549:+	0	+
#Partially deleted in new
chr17	39992997	39995068	ENSG00000108344.14|PSMD3|pc|chr17:39992997:39995068:+	0	+
#Deleted in new
chr17	40012225	40012804	ENSG00000265799.1|AC090844.3|lncRNA|chr17:40012225:40012804:-	0	-
#Deleted in new
chr17	40012543	40012804	ENSG00000265799.1|AC090844.3|lncRNA|chr17:40012543:40012804:-	0	-
#Deleted in new
chr17	40014237	40014359	ENSG00000265799.1|AC090844.3|lncRNA|chr17:40014237:40014359:-	0	-
#Deleted in new
chr17	40020527	40020619	ENSG00000008838.19|MED24|pc|chr17:40020527:40020619:-	0	-
#Deleted in new
chr17	40360654	40361137	ENSG00000266208.1|AC080112.2|lncRNA|chr17:40360654:40361137:+	0	+
#Deleted in new
chr17	404467	404625	ENSG00000241525.4|AC141424.1|lncRNA|chr17:404467:404625:-	0	-
#Deleted in new
chr17	404534	404592	ENSG00000241525.4|AC141424.1|lncRNA|chr17:404534:404592:-	0	-
#Deleted in new
chr17	404540	404592	ENSG00000241525.4|AC141424.1|lncRNA|chr17:404540:404592:-	0	-
#Deleted in new
chr17	40473553	40475289	ENSG00000279806.1|AC018629.1|lncRNA|chr17:40473553:40475289:-	0	-
#Deleted in new
chr17	40520714	40520859	ENSG00000266088.5|AC004585.1|lncRNA|chr17:40520714:40520859:+	0	+
#Deleted in new
chr17	40525560	40525744	ENSG00000266088.5|AC004585.1|lncRNA|chr17:40525560:40525744:+	0	+
#Partially deleted in new
chr17	40629483	40629568	ENSG00000073584.18|SMARCE1|pc|chr17:40629483:40629568:-	0	-
#Partially deleted in new
chr17	40634168	40636102	ENSG00000073584.18|SMARCE1|pc|chr17:40634168:40636102:-	0	-
#Deleted in new
chr17	40803743	40803800	ENSG00000264488.1|AC090283.1|lncRNA|chr17:40803743:40803800:+	0	+
#Deleted in new
chr17	40804794	40804854	ENSG00000264488.1|AC090283.1|lncRNA|chr17:40804794:40804854:+	0	+
#Deleted in new
chr17	40809148	40809296	ENSG00000264488.1|AC090283.1|lncRNA|chr17:40809148:40809296:+	0	+
#Deleted in new
chr17	40834381	40835085	ENSG00000167920.8|TMEM99|pc|chr17:40834381:40835085:+	0	+
#Split in new
chr17	40834381	40836270	ENSG00000167920.8|TMEM99|pc|chr17:40834381:40836270:+	0	+
#Split in new
chr17	40834381	40836274	ENSG00000167920.8|TMEM99|pc|chr17:40834381:40836274:+	0	+
#Deleted in new
chr17	409196	410031	ENSG00000241525.4|AC141424.1|lncRNA|chr17:409196:410031:-	0	-
#Deleted in new
chr1	74095029	74095123	ENSG00000162620.15|LRRIQ3|pc|chr1:74095029:74095123:-	0	-
#Deleted in new
chr17	40975496	40975926	ENSG00000234477.1|AC004231.1|lncRNA|chr17:40975496:40975926:+	0	+
#Deleted in new
chr17	40986303	40986374	ENSG00000204889.10|KRT40|pc|chr17:40986303:40986374:-	0	-
#Deleted in new
chr17	40986921	40987001	ENSG00000204889.10|KRT40|pc|chr17:40986921:40987001:-	0	-
#Deleted in new
chr17	40987046	40987135	ENSG00000204889.10|KRT40|pc|chr17:40987046:40987135:-	0	-
#Deleted in new
chr17	41016789	41016861	ENSG00000212901.3|KRTAP3-1|pc|chr17:41016789:41016861:-	0	-
#Deleted in new
chr17	41019265	41019324	ENSG00000212901.3|KRTAP3-1|pc|chr17:41019265:41019324:-	0	-
#Duplicated in new
chr17	41105388	41105581	ENSG00000212722.7|KRTAP4-9|pc|chr17:41105388:41105581:+	0	+
#Duplicated in new
chr17	41123090	41124167	ENSG00000213416.3|KRTAP4-12|pc|chr17:41123090:41124167:-	0	-
#Partially deleted in new
chr17	41265338	41266641	ENSG00000212659.1|KRTAP9-6|pc|chr17:41265338:41266641:+	0	+
#Deleted in new
chr17	41402415	41402508	ENSG00000234859.5|AC003958.2|lncRNA|chr17:41402415:41402508:+	0	+
#Deleted in new
chr17	41402422	41402508	ENSG00000234859.5|AC003958.2|lncRNA|chr17:41402422:41402508:+	0	+
#Split in new
chr17	41408420	41410317	ENSG00000234859.5|AC003958.2|lncRNA|chr17:41408420:41410317:+	0	+
#Deleted in new
chr17	41412418	41412588	ENSG00000234859.5|AC003958.2|lncRNA|chr17:41412418:41412588:+	0	+
#Split in new
chr17	41423353	41425049	ENSG00000234859.5|AC003958.2|lncRNA|chr17:41423353:41425049:+	0	+
#Deleted in new
chr17	41436445	41437541	ENSG00000171360.3|KRT38|pc|chr17:41436445:41437541:-	0	-
#Deleted in new
chr1	74144383	74144545	ENSG00000162620.15|LRRIQ3|pc|chr1:74144383:74144545:-	0	-
#Partially deleted in new
chr17	41492325	41492546	ENSG00000126337.13|KRT36|pc|chr17:41492325:41492546:-	0	-
#Deleted in new
chr17	4168150	4168192	ENSG00000185722.16|ANKFY1|pc|chr17:4168150:4168192:-	0	-
#Deleted in new
chr17	41717741	41718026	ENSG00000173805.15|HAP1|pc|chr17:41717741:41718026:-	0	-
#Partially deleted in new
chr17	41802319	41802423	ENSG00000141696.12|P3H4|pc|chr17:41802319:41802423:-	0	-
#Deleted in new
chr17	41832607	41832703	ENSG00000141698.16|NT5C3B|pc|chr17:41832607:41832703:-	0	-
#Deleted in new
chr17	4186459	4188869	ENSG00000185722.16|ANKFY1|pc|chr17:4186459:4188869:-	0	-
#Deleted in new
chr17	4186893	4187109	ENSG00000185722.16|ANKFY1|pc|chr17:4186893:4187109:-	0	-
#Deleted in new
chr17	4187205	4187310	ENSG00000167740.9|CYB5D2|pc|chr17:4187205:4187310:+	0	+
#Deleted in new
chr17	4191186	4191335	ENSG00000185722.16|ANKFY1|pc|chr17:4191186:4191335:-	0	-
#Partially deleted in new
chr17	41984305	41986067	ENSG00000168259.14|DNAJC7|pc|chr17:41984305:41986067:-	0	-
#Partially deleted in new
chr1	74200691	74200818	ENSG00000254685.6|FPGT|pc|chr1:74200691:74200818:+	0	+
#Partially deleted in new
chr17	42012981	42014937	ENSG00000168259.14|DNAJC7|pc|chr17:42012981:42014937:-	0	-
#Deleted in new
chr17	42023027	42023141	ENSG00000168256.17|NKIRAS2|pc|chr17:42023027:42023141:+	0	+
#Deleted in new
chr17	42112112	42112205	ENSG00000108771.12|DHX58|pc|chr17:42112112:42112205:-	0	-
#Partially deleted in new
chr17	42112112	42112486	ENSG00000108771.12|DHX58|pc|chr17:42112112:42112486:-	0	-
#Partially deleted in new
chr17	42112604	42112713	ENSG00000108771.12|DHX58|pc|chr17:42112604:42112713:-	0	-
#Partially deleted in new
chr17	42112604	42112714	ENSG00000108771.12|DHX58|pc|chr17:42112604:42112714:-	0	-
#Partially deleted in new
chr17	42137761	42137878	ENSG00000108774.14|RAB5C|pc|chr17:42137761:42137878:-	0	-
#Partially deleted in new
chr17	42155767	42155972	ENSG00000267658.1|AC099811.3|lncRNA|chr17:42155767:42155972:+	0	+
#Deleted in new
chr17	42193766	42193850	ENSG00000167925.15|GHDC|pc|chr17:42193766:42193850:-	0	-
#Partially deleted in new
chr17	42268586	42268715	ENSG00000267758.1|AC099811.4|lncRNA|chr17:42268586:42268715:+	0	+
#Partially deleted in new
chr1	74233367	74234086	ENSG00000254685.6|FPGT|pc|chr1:74233367:74234086:+	0	+
#Deleted in new
chr17	423479	423592	ENSG00000187624.8|C17orf97|pc|chr17:423479:423592:+	0	+
#Deleted in new
chr17	423479	423719	ENSG00000187624.8|C17orf97|pc|chr17:423479:423719:+	0	+
#Deleted in new
chr17	42374058	42374206	ENSG00000168610.14|STAT3|pc|chr17:42374058:42374206:-	0	-
#Deleted in new
chr1	74240807	74240835	ENSG00000259030.6|FPGT-TNNI3K|pc|chr1:74240807:74240835:+	0	+
#Deleted in new
chr17	42478926	42479049	ENSG00000033627.16|ATP6V0A1|pc|chr17:42478926:42479049:+	0	+
#Deleted in new
chr17	42481285	42481358	ENSG00000033627.16|ATP6V0A1|pc|chr17:42481285:42481358:+	0	+
#Partially deleted in new
chr17	42495866	42496550	ENSG00000267222.1|AC107993.1|lncRNA|chr17:42495866:42496550:+	0	+
#Partially deleted in new
chr17	42549213	42553030	ENSG00000108786.10|HSD17B1|pc|chr17:42549213:42553030:+	0	+
#Deleted in new
chr17	42561466	42561680	ENSG00000068120.14|COASY|pc|chr17:42561466:42561680:+	0	+
#Deleted in new
chr17	42561618	42561680	ENSG00000266929.1|AC067852.1|lncRNA|chr17:42561618:42561680:+	0	+
#Deleted in new
chr17	42574315	42574334	ENSG00000131470.14|PSMC3IP|pc|chr17:42574315:42574334:-	0	-
#Deleted in new
chr17	42596532	42596627	ENSG00000141699.10|RETREG3|pc|chr17:42596532:42596627:-	0	-
#Deleted in new
chr17	42598642	42599177	ENSG00000280183.1|AC067852.7|lncRNA|chr17:42598642:42599177:+	0	+
#Deleted in new
chr17	42681992	42682020	ENSG00000267042.1|AC100793.2|lncRNA|chr17:42681992:42682020:+	0	+
#Partially deleted in new
chr17	42689777	42690207	ENSG00000108797.11|CNTNAP1|pc|chr17:42689777:42690207:+	0	+
#Deleted in new
chr17	42731774	42731893	ENSG00000108799.12|EZH1|pc|chr17:42731774:42731893:-	0	-
#Partially deleted in new
chr17	42758294	42759022	ENSG00000197291.8|RAMP2-AS1|lncRNA|chr17:42758294:42759022:-	0	-
#Deleted in new
chr17	42758446	42758493	ENSG00000131477.10|RAMP2|pc|chr17:42758446:42758493:+	0	+
#Partially deleted in new
chr17	42811654	42812866	ENSG00000126581.12|BECN1|pc|chr17:42811654:42812866:-	0	-
#Deleted in new
chr17	42812230	42812356	ENSG00000126581.12|BECN1|pc|chr17:42812230:42812356:-	0	-
#Partially deleted in new
chr17	42815670	42815772	ENSG00000126581.12|BECN1|pc|chr17:42815670:42815772:-	0	-
#Partially deleted in new
chr17	42820350	42820841	ENSG00000126581.12|BECN1|pc|chr17:42820350:42820841:-	0	-
#Deleted in new
chr17	42824425	42824870	ENSG00000131467.10|PSME3|pc|chr17:42824425:42824870:+	0	+
#Deleted in new
chr17	42825175	42825232	ENSG00000126581.12|BECN1|pc|chr17:42825175:42825232:-	0	-
#Deleted in new
chr17	42825757	42825858	ENSG00000131467.10|PSME3|pc|chr17:42825757:42825858:+	0	+
#Deleted in new
chr17	42854077	42854155	ENSG00000131471.6|AOC3|pc|chr17:42854077:42854155:+	0	+
#Partially deleted in new
chr17	42854126	42854303	ENSG00000131471.6|AOC3|pc|chr17:42854126:42854303:+	0	+
#Deleted in new
chr17	42874669	42874863	ENSG00000213373.7|LINC00671|lncRNA|chr17:42874669:42874863:-	0	-
#Deleted in new
chr17	42877974	42878073	ENSG00000213373.7|LINC00671|lncRNA|chr17:42877974:42878073:-	0	-
#Deleted in new
chr17	42878526	42879818	ENSG00000213373.7|LINC00671|lncRNA|chr17:42878526:42879818:-	0	-
#Deleted in new
chr17	42879487	42879818	ENSG00000213373.7|LINC00671|lncRNA|chr17:42879487:42879818:-	0	-
#Deleted in new
chr17	42879589	42879818	ENSG00000213373.7|LINC00671|lncRNA|chr17:42879589:42879818:-	0	-
#Deleted in new
chr17	42884594	42884686	ENSG00000213373.7|LINC00671|lncRNA|chr17:42884594:42884686:-	0	-
#Deleted in new
chr17	42897686	42897918	ENSG00000213373.7|LINC00671|lncRNA|chr17:42897686:42897918:-	0	-
#Partially deleted in new
chr17	42957137	42957532	ENSG00000266967.6|AARSD1|pc|chr17:42957137:42957532:-	0	-
#Deleted in new
chr17	42962174	42962272	ENSG00000266967.6|AARSD1|pc|chr17:42962174:42962272:-	0	-
#Deleted in new
chr17	42962174	42962295	ENSG00000266967.6|AARSD1|pc|chr17:42962174:42962295:-	0	-
#Deleted in new
chr17	431050	431062	ENSG00000187624.8|C17orf97|pc|chr17:431050:431062:+	0	+
#Deleted in new
chr17	43110464	43110580	ENSG00000012048.20|BRCA1|pc|chr17:43110464:43110580:-	0	-
#Partially deleted in new
chr17	43148367	43148783	ENSG00000267002.2|AC060780.1|lncRNA|chr17:43148367:43148783:-	0	-
#Deleted in new
chr17	43159422	43159727	ENSG00000267002.2|AC060780.1|lncRNA|chr17:43159422:43159727:-	0	-
#Deleted in new
chr17	43160289	43164812	ENSG00000267002.2|AC060780.1|lncRNA|chr17:43160289:43164812:-	0	-
#Deleted in new
chr17	43165759	43167849	ENSG00000267002.2|AC060780.1|lncRNA|chr17:43165759:43167849:-	0	-
#Deleted in new
chr17	43166177	43167250	ENSG00000267002.2|AC060780.1|lncRNA|chr17:43166177:43167250:-	0	-
#Deleted in new
chr17	43166979	43167262	ENSG00000267002.2|AC060780.1|lncRNA|chr17:43166979:43167262:-	0	-
#Deleted in new
chr17	43166979	43167849	ENSG00000267002.2|AC060780.1|lncRNA|chr17:43166979:43167849:-	0	-
#Duplicated in new
chr17	43170125	43170403	ENSG00000267002.2|AC060780.1|lncRNA|chr17:43170125:43170403:-	0	-
#Duplicated in new
chr17	43170125	43170441	ENSG00000267002.2|AC060780.1|lncRNA|chr17:43170125:43170441:-	0	-
#Deleted in new
chr17	43226155	43226347	ENSG00000236383.8|LINC00854|pc|chr17:43226155:43226347:-	0	-
#Deleted in new
chr17	43230165	43230262	ENSG00000236383.8|LINC00854|pc|chr17:43230165:43230262:-	0	-
#Deleted in new
chr17	43304867	43305397	ENSG00000236383.8|LINC00854|pc|chr17:43304867:43305397:-	0	-
#Deleted in new
chr17	43360040	43361361	ENSG00000279602.1|AC109326.1|lncRNA|chr17:43360040:43361361:-	0	-
#Deleted in new
chr17	43369844	43371039	ENSG00000188825.13|LINC00910|lncRNA|chr17:43369844:43371039:-	0	-
#Deleted in new
chr17	43371246	43371426	ENSG00000188825.13|LINC00910|lncRNA|chr17:43371246:43371426:-	0	-
#Deleted in new
chr17	43375927	43377813	ENSG00000188825.13|LINC00910|lncRNA|chr17:43375927:43377813:-	0	-
#Deleted in new
chr17	43377206	43377813	ENSG00000188825.13|LINC00910|lncRNA|chr17:43377206:43377813:-	0	-
#Deleted in new
chr17	43377574	43377813	ENSG00000188825.13|LINC00910|lncRNA|chr17:43377574:43377813:-	0	-
#Deleted in new
chr17	43377670	43377813	ENSG00000188825.13|LINC00910|lncRNA|chr17:43377670:43377813:-	0	-
#Deleted in new
chr17	43379122	43379262	ENSG00000188825.13|LINC00910|lncRNA|chr17:43379122:43379262:-	0	-
#Deleted in new
chr17	43381272	43381660	ENSG00000188825.13|LINC00910|lncRNA|chr17:43381272:43381660:-	0	-
#Deleted in new
chr17	43381287	43381660	ENSG00000188825.13|LINC00910|lncRNA|chr17:43381287:43381660:-	0	-
#Deleted in new
chr17	43385862	43388057	ENSG00000188825.13|LINC00910|lncRNA|chr17:43385862:43388057:-	0	-
#Deleted in new
chr17	43387935	43388057	ENSG00000188825.13|LINC00910|lncRNA|chr17:43387935:43388057:-	0	-
#Deleted in new
chr17	43388288	43388312	ENSG00000188825.13|LINC00910|lncRNA|chr17:43388288:43388312:-	0	-
#Deleted in new
chr17	43388288	43388331	ENSG00000188825.13|LINC00910|lncRNA|chr17:43388288:43388331:-	0	-
#Deleted in new
chr17	43388288	43388334	ENSG00000188825.13|LINC00910|lncRNA|chr17:43388288:43388334:-	0	-
#Deleted in new
chr17	43388288	43388335	ENSG00000188825.13|LINC00910|lncRNA|chr17:43388288:43388335:-	0	-
#Deleted in new
chr17	43388288	43388545	ENSG00000188825.13|LINC00910|lncRNA|chr17:43388288:43388545:-	0	-
#Deleted in new
chr17	43388504	43389199	ENSG00000188825.13|LINC00910|lncRNA|chr17:43388504:43389199:-	0	-
#Deleted in new
chr1	74341578	74341987	ENSG00000237324.3|AC093158.1|lncRNA|chr1:74341578:74341987:-	0	-
#Deleted in new
chr17	43450896	43451200	ENSG00000267151.5|MIR2117HG|lncRNA|chr17:43450896:43451200:+	0	+
#Deleted in new
chr17	43526386	43526803	ENSG00000067596.10|DHX8|pc|chr17:43526386:43526803:+	0	+
#Deleted in new
chr17	43526495	43526786	ENSG00000067596.10|DHX8|pc|chr17:43526495:43526786:+	0	+
#Deleted in new
chr17	43526495	43526796	ENSG00000067596.10|DHX8|pc|chr17:43526495:43526796:+	0	+
#Deleted in new
chr17	43680272	43680365	ENSG00000267440.1|AC004149.1|lncRNA|chr17:43680272:43680365:+	0	+
#Deleted in new
chr1	74375564	74375848	ENSG00000116783.14|TNNI3K|pc|chr1:74375564:74375848:+	0	+
#Partially deleted in new
chr1	74376600	74377176	ENSG00000237324.3|AC093158.1|lncRNA|chr1:74376600:74377176:-	0	-
#Deleted in new
chr17	43773973	43774109	ENSG00000108861.8|DUSP3|pc|chr17:43773973:43774109:-	0	-
#Deleted in new
chr17	43774034	43774109	ENSG00000108861.8|DUSP3|pc|chr17:43774034:43774109:-	0	-
#Partially deleted in new
chr17	43784382	43787612	ENSG00000231256.7|C17orf105|pc|chr17:43784382:43787612:+	0	+
#Deleted in new
chr17	43784617	43784833	ENSG00000231256.7|C17orf105|pc|chr17:43784617:43784833:+	0	+
#Deleted in new
chr17	43784667	43784682	ENSG00000267604.1|AC003098.1|lncRNA|chr17:43784667:43784682:-	0	-
#Deleted in new
chr1	74378654	74378719	ENSG00000237324.3|AC093158.1|lncRNA|chr1:74378654:74378719:-	0	-
#Deleted in new
chr1	74378695	74378802	ENSG00000237324.3|AC093158.1|lncRNA|chr1:74378695:74378802:-	0	-
#Deleted in new
chr17	43818999	43819081	ENSG00000161647.18|MPP3|pc|chr17:43818999:43819081:-	0	-
#Deleted in new
chr17	43855595	43855796	ENSG00000161649.12|CD300LG|pc|chr17:43855595:43855796:+	0	+
#Deleted in new
chr17	43883385	43883386	ENSG00000108852.14|MPP2|pc|chr17:43883385:43883386:-	0	-
#Deleted in new
chr17	43916742	43916841	ENSG00000282199.1|AC007993.3|lncRNA|chr17:43916742:43916841:-	0	-
#Deleted in new
chr17	43917193	43917985	ENSG00000267496.4|FAM215A|lncRNA|chr17:43917193:43917985:+	0	+
#Deleted in new
chr17	43917208	43917963	ENSG00000267496.4|FAM215A|lncRNA|chr17:43917208:43917963:+	0	+
#Deleted in new
chr17	43917292	43917399	ENSG00000282199.1|AC007993.3|lncRNA|chr17:43917292:43917399:-	0	-
#Deleted in new
chr17	43920417	43920479	ENSG00000282199.1|AC007993.3|lncRNA|chr17:43920417:43920479:-	0	-
#Deleted in new
chr17	43929794	43929967	ENSG00000267420.1|AC007993.2|lncRNA|chr17:43929794:43929967:+	0	+
#Partially deleted in new
chr17	43942186	43942274	ENSG00000108849.7|PPY|pc|chr17:43942186:43942274:-	0	-
#Deleted in new
chr17	43957937	43958028	ENSG00000131096.10|PYY|pc|chr17:43957937:43958028:-	0	-
#Deleted in new
chr17	43966287	43966532	ENSG00000131096.10|PYY|pc|chr17:43966287:43966532:-	0	-
#Deleted in new
chr17	44019237	44019442	ENSG00000091947.9|TMEM101|pc|chr17:44019237:44019442:-	0	-
#Deleted in new
chr17	44019237	44019447	ENSG00000091947.9|TMEM101|pc|chr17:44019237:44019447:-	0	-
#Deleted in new
chr17	44021321	44021435	ENSG00000091947.9|TMEM101|pc|chr17:44021321:44021435:-	0	-
#Deleted in new
chr17	44021332	44021435	ENSG00000091947.9|TMEM101|pc|chr17:44021332:44021435:-	0	-
#Deleted in new
chr17	44023038	44023106	ENSG00000091947.9|TMEM101|pc|chr17:44023038:44023106:-	0	-
#Deleted in new
chr17	44023038	44023139	ENSG00000091947.9|TMEM101|pc|chr17:44023038:44023139:-	0	-
#Deleted in new
chr17	44023038	44023151	ENSG00000091947.9|TMEM101|pc|chr17:44023038:44023151:-	0	-
#Deleted in new
chr17	44036861	44037102	ENSG00000161654.9|LSM12|pc|chr17:44036861:44037102:-	0	-
#Deleted in new
chr1	7441095	7441181	ENSG00000225126.1|AL365194.1|lncRNA|chr1:7441095:7441181:-	0	-
#Deleted in new
chr17	44182929	44183069	ENSG00000267080.5|ASB16-AS1|lncRNA|chr17:44182929:44183069:-	0	-
#Deleted in new
chr17	44182929	44183093	ENSG00000267080.5|ASB16-AS1|lncRNA|chr17:44182929:44183093:-	0	-
#Deleted in new
chr17	44208618	44209001	ENSG00000108312.14|UBTF|pc|chr17:44208618:44209001:-	0	-
#Deleted in new
chr17	44299573	44304207	ENSG00000267750.5|RUNDC3A-AS1|lncRNA|chr17:44299573:44304207:-	0	-
#Deleted in new
chr17	44302516	44304207	ENSG00000267750.5|RUNDC3A-AS1|lncRNA|chr17:44302516:44304207:-	0	-
#Deleted in new
chr17	44304980	44305043	ENSG00000267750.5|RUNDC3A-AS1|lncRNA|chr17:44304980:44305043:-	0	-
#Deleted in new
chr17	44307291	44307500	ENSG00000267750.5|RUNDC3A-AS1|lncRNA|chr17:44307291:44307500:-	0	-
#Deleted in new
chr17	44328612	44328736	ENSG00000267211.1|AC003043.1|lncRNA|chr17:44328612:44328736:+	0	+
#Deleted in new
chr17	44346088	44346228	ENSG00000030582.17|GRN|pc|chr17:44346088:44346228:+	0	+
#Deleted in new
chr17	44445754	44445922	ENSG00000186566.12|GPATCH8|pc|chr17:44445754:44445922:-	0	-
#Deleted in new
chr17	44486152	44486815	ENSG00000283045.1|AC103703.1|lncRNA|chr17:44486152:44486815:-	0	-
#Partially deleted in new
chr17	44646363	44646704	ENSG00000266979.1|LINC01180|lncRNA|chr17:44646363:44646704:-	0	-
#Deleted in new
chr17	44647284	44647386	ENSG00000266979.1|LINC01180|lncRNA|chr17:44647284:44647386:-	0	-
#Deleted in new
chr17	44648767	44650349	ENSG00000266979.1|LINC01180|lncRNA|chr17:44648767:44650349:-	0	-
#Partially deleted in new
chr17	44669382	44671220	ENSG00000180336.17|MEIOC|pc|chr17:44669382:44671220:+	0	+
#Deleted in new
chr17	44688177	44688293	ENSG00000180336.17|MEIOC|pc|chr17:44688177:44688293:+	0	+
#Partially deleted in new
chr17	44689857	44693340	ENSG00000279879.1|AC091152.4|lncRNA|chr17:44689857:44693340:+	0	+
#Deleted in new
chr17	44709303	44709366	ENSG00000161692.17|DBF4B|pc|chr17:44709303:44709366:+	0	+
#Partially deleted in new
chr17	44730964	44731422	ENSG00000161692.17|DBF4B|pc|chr17:44730964:44731422:+	0	+
#Partially deleted in new
chr17	44751939	44752264	ENSG00000161692.17|DBF4B|pc|chr17:44751939:44752264:+	0	+
#Deleted in new
chr17	44793198	44793374	ENSG00000267505.1|AC005180.2|lncRNA|chr17:44793198:44793374:+	0	+
#Partially deleted in new
chr17	44813047	44813305	ENSG00000182963.9|GJC1|pc|chr17:44813047:44813305:-	0	-
#Deleted in new
chr17	4481965	4482589	ENSG00000262823.1|AC127521.1|lncRNA|chr17:4481965:4482589:-	0	-
#Deleted in new
chr17	4482018	4482589	ENSG00000262823.1|AC127521.1|lncRNA|chr17:4482018:4482589:-	0	-
#Deleted in new
chr17	4482147	4482589	ENSG00000262823.1|AC127521.1|lncRNA|chr17:4482147:4482589:-	0	-
#Deleted in new
chr17	44849105	44849213	ENSG00000131097.6|HIGD1B|pc|chr17:44849105:44849213:+	0	+
#Deleted in new
chr17	44891833	44892329	ENSG00000108883.12|EFTUD2|pc|chr17:44891833:44892329:-	0	-
#Deleted in new
chr17	44898974	44899041	ENSG00000108883.12|EFTUD2|pc|chr17:44898974:44899041:-	0	-
#Partially deleted in new
chr17	44898974	44899049	ENSG00000108883.12|EFTUD2|pc|chr17:44898974:44899049:-	0	-
#Deleted in new
chr17	44910091	44910115	ENSG00000131095.12|GFAP|pc|chr17:44910091:44910115:-	0	-
#Deleted in new
chr17	45033854	45034042	ENSG00000172992.11|DCAKD|pc|chr17:45033854:45034042:-	0	-
#Deleted in new
chr17	45033934	45034042	ENSG00000172992.11|DCAKD|pc|chr17:45033934:45034042:-	0	-
#Deleted in new
chr17	45083657	45083755	ENSG00000136448.11|NMT1|pc|chr17:45083657:45083755:+	0	+
#Deleted in new
chr17	45129191	45129286	ENSG00000161714.11|PLCD3|pc|chr17:45129191:45129286:-	0	-
#Deleted in new
chr17	45142582	45142610	ENSG00000181513.14|ACBD4|pc|chr17:45142582:45142610:+	0	+
#Partially deleted in new
chr17	45142582	45142959	ENSG00000181513.14|ACBD4|pc|chr17:45142582:45142959:+	0	+
#Deleted in new
chr17	45159329	45159455	ENSG00000224505.2|AC138150.1|lncRNA|chr17:45159329:45159455:-	0	-
#Deleted in new
chr17	45190930	45191170	ENSG00000267121.5|AC008105.3|lncRNA|chr17:45190930:45191170:-	0	-
#Partially deleted in new
chr17	45219734	45220055	ENSG00000267121.5|AC008105.3|lncRNA|chr17:45219734:45220055:-	0	-
#Deleted in new
chr17	45249533	45249632	ENSG00000267278.5|MAP3K14-AS1|lncRNA|chr17:45249533:45249632:+	0	+
#Deleted in new
chr17	45259891	45260095	ENSG00000184361.12|SPATA32|pc|chr17:45259891:45260095:-	0	-
#Deleted in new
chr17	45260553	45260990	ENSG00000184361.12|SPATA32|pc|chr17:45260553:45260990:-	0	-
#Deleted in new
chr17	45268008	45268129	ENSG00000267278.5|MAP3K14-AS1|lncRNA|chr17:45268008:45268129:+	0	+
#Deleted in new
chr17	45268008	45268263	ENSG00000267278.5|MAP3K14-AS1|lncRNA|chr17:45268008:45268263:+	0	+
#Deleted in new
chr17	45268008	45268393	ENSG00000267278.5|MAP3K14-AS1|lncRNA|chr17:45268008:45268393:+	0	+
#Deleted in new
chr17	45268008	45268471	ENSG00000267278.5|MAP3K14-AS1|lncRNA|chr17:45268008:45268471:+	0	+
#Deleted in new
chr17	45268008	45268630	ENSG00000267278.5|MAP3K14-AS1|lncRNA|chr17:45268008:45268630:+	0	+
#Deleted in new
chr17	45281637	45282153	ENSG00000006062.14|MAP3K14|pc|chr17:45281637:45282153:-	0	-
#Deleted in new
chr17	45371401	45371591	ENSG00000267446.1|AC003070.2|lncRNA|chr17:45371401:45371591:-	0	-
#Deleted in new
chr17	45401579	45401668	ENSG00000159314.11|ARHGAP27|pc|chr17:45401579:45401668:-	0	-
#Deleted in new
chr1	74541536	74541610	ENSG00000116783.14|TNNI3K|pc|chr1:74541536:74541610:+	0	+
#Deleted in new
chr17	45434309	45434421	ENSG00000159314.11|ARHGAP27|pc|chr17:45434309:45434421:-	0	-
#Deleted in new
chr17	45440836	45441059	ENSG00000225190.10|PLEKHM1|pc|chr17:45440836:45441059:-	0	-
#Partially deleted in new
chr17	45446128	45446273	ENSG00000225190.10|PLEKHM1|pc|chr17:45446128:45446273:-	0	-
#Deleted in new
chr17	45447911	45448112	ENSG00000225190.10|PLEKHM1|pc|chr17:45447911:45448112:-	0	-
#Deleted in new
chr17	45454797	45454897	ENSG00000236234.1|AC091132.2|lncRNA|chr17:45454797:45454897:+	0	+
#Deleted in new
chr17	45459382	45460432	ENSG00000225190.10|PLEKHM1|pc|chr17:45459382:45460432:-	0	-
#Deleted in new
chr17	45475887	45476073	ENSG00000225190.10|PLEKHM1|pc|chr17:45475887:45476073:-	0	-
#Deleted in new
chr17	45531576	45533838	ENSG00000266918.1|AC091132.4|lncRNA|chr17:45531576:45533838:+	0	+
#Deleted in new
chr17	45551439	45551537	ENSG00000267246.1|AC091132.6|lncRNA|chr17:45551439:45551537:-	0	-
#Deleted in new
chr17	45552854	45553267	ENSG00000267198.1|AC091132.5|lncRNA|chr17:45552854:45553267:+	0	+
#Deleted in new
chr17	45554158	45554370	ENSG00000267198.1|AC091132.5|lncRNA|chr17:45554158:45554370:+	0	+
#Duplicated in new
chr17	45558385	45558738	ENSG00000267246.1|AC091132.6|lncRNA|chr17:45558385:45558738:-	0	-
#Duplicated in new
chr17	45558406	45558767	ENSG00000267198.1|AC091132.5|lncRNA|chr17:45558406:45558767:+	0	+
#Deleted in new
chr17	45562645	45563230	ENSG00000267198.1|AC091132.5|lncRNA|chr17:45562645:45563230:+	0	+
#Deleted in new
chr17	45592620	45593369	ENSG00000280022.1|AC126544.2|lncRNA|chr17:45592620:45593369:+	0	+
#Deleted in new
chr17	4565751	4565854	ENSG00000262921.1|AC118754.2|lncRNA|chr17:4565751:4565854:+	0	+
#Deleted in new
chr17	45672826	45672902	ENSG00000263715.7|LINC02210-CRHR1|pc|chr17:45672826:45672902:+	0	+
#Deleted in new
chr17	4571326	4571760	ENSG00000262921.1|AC118754.2|lncRNA|chr17:4571326:4571760:+	0	+
#Deleted in new
chr17	45731702	45731944	ENSG00000265547.1|AC217774.1|lncRNA|chr17:45731702:45731944:-	0	-
#Deleted in new
chr1	74579403	74579763	ENSG00000178965.13|ERICH3|pc|chr1:74579403:74579763:-	0	-
#Deleted in new
chr17	45825485	45825595	ENSG00000120088.14|CRHR1|pc|chr17:45825485:45825595:+	0	+
#Partially deleted in new
chr17	45827652	45827914	ENSG00000264589.2|MAPT-AS1|lncRNA|chr17:45827652:45827914:-	0	-
#Deleted in new
chr17	45999249	45999694	ENSG00000256762.1|STH|pc|chr17:45999249:45999694:+	0	+
#Partially deleted in new
chr17	46039026	46043101	ENSG00000120071.13|KANSL1|pc|chr17:46039026:46043101:-	0	-
#Partially deleted in new
chr17	46039701	46046121	ENSG00000120071.13|KANSL1|pc|chr17:46039701:46046121:-	0	-
#Partially deleted in new
chr17	46049398	46050704	ENSG00000120071.13|KANSL1|pc|chr17:46049398:46050704:-	0	-
#Deleted in new
chr17	46088427	46088680	ENSG00000120071.13|KANSL1|pc|chr17:46088427:46088680:-	0	-
#Deleted in new
chr17	46119966	46120049	ENSG00000120071.13|KANSL1|pc|chr17:46119966:46120049:-	0	-
#Deleted in new
chr17	46121323	46121338	ENSG00000120071.13|KANSL1|pc|chr17:46121323:46121338:-	0	-
#Deleted in new
chr17	46148124	46148239	ENSG00000120071.13|KANSL1|pc|chr17:46148124:46148239:-	0	-
#Deleted in new
chr17	46152903	46152966	ENSG00000120071.13|KANSL1|pc|chr17:46152903:46152966:-	0	-
#Deleted in new
chr17	46156773	46156895	ENSG00000120071.13|KANSL1|pc|chr17:46156773:46156895:-	0	-
#Deleted in new
chr17	46169530	46169605	ENSG00000120071.13|KANSL1|pc|chr17:46169530:46169605:-	0	-
#Deleted in new
chr17	46196057	46196723	ENSG00000214401.4|KANSL1-AS1|lncRNA|chr17:46196057:46196723:+	0	+
#Deleted in new
chr17	46196367	46196537	ENSG00000214401.4|KANSL1-AS1|lncRNA|chr17:46196367:46196537:+	0	+
#Deleted in new
chr17	46196367	46196721	ENSG00000214401.4|KANSL1-AS1|lncRNA|chr17:46196367:46196721:+	0	+
#Partially deleted in new
chr1	74621395	74626098	ENSG00000234497.5|ERICH3-AS1|lncRNA|chr1:74621395:74626098:+	0	+
#Deleted in new
chr1	74623047	74623285	ENSG00000178965.13|ERICH3|pc|chr1:74623047:74623285:-	0	-
#Deleted in new
chr17	46292732	46294029	ENSG00000176681.14|LRRC37A|pc|chr17:46292732:46294029:+	0	+
#Deleted in new
chr17	46320495	46320571	ENSG00000228696.8|ARL17B|pc|chr17:46320495:46320571:-	0	-
#Deleted in new
chr17	46334679	46334837	ENSG00000228696.8|ARL17B|pc|chr17:46334679:46334837:-	0	-
#Deleted in new
chr17	46511510	46511608	ENSG00000238083.7|LRRC37A2|pc|chr17:46511510:46511608:+	0	+
#Deleted in new
chr17	46538350	46538426	ENSG00000185829.17|ARL17A|pc|chr17:46538350:46538426:-	0	-
#Deleted in new
chr17	46552532	46552690	ENSG00000185829.17|ARL17A|pc|chr17:46552532:46552690:-	0	-
#Split in new
chr17	46554043	46557630	ENSG00000185829.17|ARL17A|pc|chr17:46554043:46557630:-	0	-
#Partially deleted in new
chr17	46555530	46555643	ENSG00000238083.7|LRRC37A2|pc|chr17:46555530:46555643:+	0	+
#Partially deleted in new
chr17	46555530	46555650	ENSG00000238083.7|LRRC37A2|pc|chr17:46555530:46555650:+	0	+
#Partially deleted in new
chr17	46559153	46559304	ENSG00000185829.17|ARL17A|pc|chr17:46559153:46559304:-	0	-
#Deleted in new
chr17	46562468	46562795	ENSG00000232300.1|FAM215B|lncRNA|chr17:46562468:46562795:-	0	-
#Deleted in new
chr17	46602441	46602523	ENSG00000073969.18|NSF|pc|chr17:46602441:46602523:+	0	+
#Partially deleted in new
chr17	4669773	4671531	ENSG00000141456.14|PELP1|pc|chr17:4669773:4671531:-	0	-
#Partially deleted in new
chr17	4673829	4673873	ENSG00000235085.3|AC091153.2|lncRNA|chr17:4673829:4673873:+	0	+
#Partially deleted in new
chr17	4683029	4683111	ENSG00000141456.14|PELP1|pc|chr17:4683029:4683111:-	0	-
#Deleted in new
chr17	46830594	46830918	ENSG00000108379.9|WNT3|pc|chr17:46830594:46830918:-	0	-
#Partially deleted in new
chr17	46885033	46886730	ENSG00000158955.10|WNT9B|pc|chr17:46885033:46886730:+	0	+
#Deleted in new
chr17	46909741	46910166	ENSG00000262031.1|LINC01974|lncRNA|chr17:46909741:46910166:-	0	-
#Deleted in new
chr17	46911443	46911512	ENSG00000262031.1|LINC01974|lncRNA|chr17:46911443:46911512:-	0	-
#Deleted in new
chr17	46916769	46916831	ENSG00000261886.1|AC005670.1|lncRNA|chr17:46916769:46916831:-	0	-
#Deleted in new
chr17	46917164	46917273	ENSG00000261886.1|AC005670.1|lncRNA|chr17:46917164:46917273:-	0	-
#Deleted in new
chr17	46924260	46924468	ENSG00000108433.16|GOSR2|pc|chr17:46924260:46924468:+	0	+
#Deleted in new
chr17	46937892	46938010	ENSG00000108433.16|GOSR2|pc|chr17:46937892:46938010:+	0	+
#Deleted in new
chr17	46948565	46948657	ENSG00000108433.16|GOSR2|pc|chr17:46948565:46948657:+	0	+
#Deleted in new
chr17	4696623	4696786	ENSG00000235085.3|AC091153.2|lncRNA|chr17:4696623:4696786:+	0	+
#Deleted in new
chr17	4696623	4696831	ENSG00000235085.3|AC091153.2|lncRNA|chr17:4696623:4696831:+	0	+
#Deleted in new
chr17	46966533	46966626	ENSG00000108433.16|GOSR2|pc|chr17:46966533:46966626:+	0	+
#Deleted in new
chr17	46966533	46966626	ENSG00000262633.2|AC005670.2|pc|chr17:46966533:46966626:+	0	+
#Deleted in new
chr17	46966533	46966783	ENSG00000108433.16|GOSR2|pc|chr17:46966533:46966783:+	0	+
#Deleted in new
chr17	46966533	46966818	ENSG00000108433.16|GOSR2|pc|chr17:46966533:46966818:+	0	+
#Deleted in new
chr17	46966533	46966851	ENSG00000108433.16|GOSR2|pc|chr17:46966533:46966851:+	0	+
#Deleted in new
chr17	46966533	46966947	ENSG00000108433.16|GOSR2|pc|chr17:46966533:46966947:+	0	+
#Deleted in new
chr17	46966533	46966948	ENSG00000108433.16|GOSR2|pc|chr17:46966533:46966948:+	0	+
#Deleted in new
chr17	46966533	46966954	ENSG00000108433.16|GOSR2|pc|chr17:46966533:46966954:+	0	+
#Deleted in new
chr17	46966533	46966960	ENSG00000108433.16|GOSR2|pc|chr17:46966533:46966960:+	0	+
#Deleted in new
chr17	46966533	46966982	ENSG00000108433.16|GOSR2|pc|chr17:46966533:46966982:+	0	+
#Deleted in new
chr17	46966533	46967000	ENSG00000108433.16|GOSR2|pc|chr17:46966533:46967000:+	0	+
#Deleted in new
chr17	46968708	46968929	ENSG00000108433.16|GOSR2|pc|chr17:46968708:46968929:+	0	+
#Deleted in new
chr17	46998699	46998817	ENSG00000262879.5|AC068152.1|lncRNA|chr17:46998699:46998817:-	0	-
#Deleted in new
chr17	47005617	47005784	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47005617:47005784:-	0	-
#Deleted in new
chr17	47007839	47007884	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47007839:47007884:-	0	-
#Deleted in new
chr17	47035043	47035126	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47035043:47035126:-	0	-
#Deleted in new
chr17	47056206	47056753	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47056206:47056753:-	0	-
#Deleted in new
chr17	47056459	47056753	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47056459:47056753:-	0	-
#Deleted in new
chr17	47056608	47056753	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47056608:47056753:-	0	-
#Deleted in new
chr17	47067413	47067452	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47067413:47067452:-	0	-
#Deleted in new
chr17	47067413	47067469	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47067413:47067469:-	0	-
#Deleted in new
chr17	47067413	47067488	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47067413:47067488:-	0	-
#Deleted in new
chr17	47067413	47067537	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47067413:47067537:-	0	-
#Deleted in new
chr17	47071445	47071612	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47071445:47071612:-	0	-
#Deleted in new
chr17	47071473	47071650	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47071473:47071650:-	0	-
#Deleted in new
chr17	47072471	47072559	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47072471:47072559:-	0	-
#Partially deleted in new
chr17	47081919	47082350	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47081919:47082350:-	0	-
#Deleted in new
chr17	47099834	47099941	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47099834:47099941:-	0	-
#Deleted in new
chr17	47099834	47099949	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47099834:47099949:-	0	-
#Partially deleted in new
chr17	47099834	47100239	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47099834:47100239:-	0	-
#Partially deleted in new
chr17	47099834	47100248	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47099834:47100248:-	0	-
#Deleted in new
chr17	47099835	47100021	ENSG00000262879.5|AC068152.1|lncRNA|chr17:47099835:47100021:-	0	-
#Partially deleted in new
chr17	4714550	4715043	ENSG00000141480.17|ARRB2|pc|chr17:4714550:4715043:+	0	+
#Deleted in new
chr17	47156646	47156715	ENSG00000004897.11|CDC27|pc|chr17:47156646:47156715:-	0	-
#Deleted in new
chr17	47161074	47161133	ENSG00000262265.1|AC002558.3|lncRNA|chr17:47161074:47161133:-	0	-
#Partially deleted in new
chr17	47161722	47162064	ENSG00000262265.1|AC002558.3|lncRNA|chr17:47161722:47162064:-	0	-
#Deleted in new
chr17	47170959	47171049	ENSG00000261872.1|AC002558.2|lncRNA|chr17:47170959:47171049:+	0	+
#Deleted in new
chr17	47200445	47200586	ENSG00000198336.9|MYL4|pc|chr17:47200445:47200586:+	0	+
#Deleted in new
chr17	47303459	47303782	ENSG00000263293.2|THCAT158|lncRNA|chr17:47303459:47303782:-	0	-
#Deleted in new
chr17	47303473	47303782	ENSG00000263293.2|THCAT158|lncRNA|chr17:47303473:47303782:-	0	-
#Deleted in new
chr17	47318471	47318620	ENSG00000263293.2|THCAT158|lncRNA|chr17:47318471:47318620:-	0	-
#Partially deleted in new
chr17	4732230	4732371	ENSG00000261898.2|AC091153.4|lncRNA|chr17:4732230:4732371:-	0	-
#Deleted in new
chr17	47326225	47326387	ENSG00000178852.15|EFCAB13|pc|chr17:47326225:47326387:+	0	+
#Deleted in new
chr17	47326338	47326387	ENSG00000178852.15|EFCAB13|pc|chr17:47326338:47326387:+	0	+
#Deleted in new
chr1	74732766	74732811	ENSG00000116791.13|CRYZ|pc|chr1:74732766:74732811:-	0	-
#Deleted in new
chr17	47328792	47329038	ENSG00000178852.15|EFCAB13|pc|chr17:47328792:47329038:+	0	+
#Deleted in new
chr17	47329850	47329905	ENSG00000178852.15|EFCAB13|pc|chr17:47329850:47329905:+	0	+
#Partially deleted in new
chr17	4733574	4734479	ENSG00000161921.14|CXCL16|pc|chr17:4733574:4734479:-	0	-
#Deleted in new
chr17	47339855	47340088	ENSG00000178852.15|EFCAB13|pc|chr17:47339855:47340088:+	0	+
#Deleted in new
chr1	74734117	74734182	ENSG00000162623.15|TYW3|pc|chr1:74734117:74734182:+	0	+
#Deleted in new
chr17	47341390	47341451	ENSG00000178852.15|EFCAB13|pc|chr17:47341390:47341451:+	0	+
#Partially deleted in new
chr17	4734285	4734652	ENSG00000161921.14|CXCL16|pc|chr17:4734285:4734652:-	0	-
#Deleted in new
chr17	47369615	47369924	ENSG00000178852.15|EFCAB13|pc|chr17:47369615:47369924:+	0	+
#Deleted in new
chr1	74750122	74750276	ENSG00000162623.15|TYW3|pc|chr1:74750122:74750276:+	0	+
#Deleted in new
chr1	74751048	74751442	ENSG00000162623.15|TYW3|pc|chr1:74751048:74751442:+	0	+
#Deleted in new
chr1	74751133	74751442	ENSG00000162623.15|TYW3|pc|chr1:74751133:74751442:+	0	+
#Deleted in new
chr17	47559611	47559687	ENSG00000141279.15|NPEPPS|pc|chr17:47559611:47559687:+	0	+
#Partially deleted in new
chr17	47579389	47582849	ENSG00000141279.15|NPEPPS|pc|chr17:47579389:47582849:+	0	+
#Deleted in new
chr1	74761658	74761759	ENSG00000162623.15|TYW3|pc|chr1:74761658:74761759:+	0	+
#Deleted in new
chr17	47626005	47626627	ENSG00000263766.5|AC025682.1|lncRNA|chr17:47626005:47626627:-	0	-
#Deleted in new
chr17	47626546	47626627	ENSG00000263766.5|AC025682.1|lncRNA|chr17:47626546:47626627:-	0	-
#Deleted in new
chr17	47636511	47636550	ENSG00000263766.5|AC025682.1|lncRNA|chr17:47636511:47636550:-	0	-
#Deleted in new
chr17	47636511	47636601	ENSG00000263766.5|AC025682.1|lncRNA|chr17:47636511:47636601:-	0	-
#Partially deleted in new
chr1	74763893	74766674	ENSG00000162623.15|TYW3|pc|chr1:74763893:74766674:+	0	+
#Deleted in new
chr17	47662168	47662238	ENSG00000108424.9|KPNB1|pc|chr17:47662168:47662238:+	0	+
#Deleted in new
chr1	74766283	74766678	ENSG00000162623.15|TYW3|pc|chr1:74766283:74766678:+	0	+
#Deleted in new
chr17	47670323	47670343	ENSG00000108424.9|KPNB1|pc|chr17:47670323:47670343:+	0	+
#Deleted in new
chr17	47671709	47671862	ENSG00000108424.9|KPNB1|pc|chr17:47671709:47671862:+	0	+
#Partially deleted in new
chr17	47673489	47673839	ENSG00000108424.9|KPNB1|pc|chr17:47673489:47673839:+	0	+
#Deleted in new
chr17	47829138	47829236	ENSG00000159111.12|MRPL10|pc|chr17:47829138:47829236:-	0	-
#Deleted in new
chr17	47829138	47829673	ENSG00000159111.12|MRPL10|pc|chr17:47829138:47829673:-	0	-
#Partially deleted in new
chr17	47891254	47891581	ENSG00000264920.1|AC018521.5|lncRNA|chr17:47891254:47891581:-	0	-
#Partially deleted in new
chr17	47891274	47891581	ENSG00000264920.1|AC018521.5|lncRNA|chr17:47891274:47891581:-	0	-
#Deleted in new
chr17	47908599	47908697	ENSG00000167182.14|SP2|pc|chr17:47908599:47908697:+	0	+
#Deleted in new
chr17	47909663	47909730	ENSG00000167182.14|SP2|pc|chr17:47909663:47909730:+	0	+
#Deleted in new
chr17	47914725	47914861	ENSG00000167182.14|SP2|pc|chr17:47914725:47914861:+	0	+
#Deleted in new
chr17	47917784	47917856	ENSG00000167182.14|SP2|pc|chr17:47917784:47917856:+	0	+
#Deleted in new
chr17	47918451	47918571	ENSG00000234494.7|SP2-AS1|lncRNA|chr17:47918451:47918571:-	0	-
#Deleted in new
chr17	47932971	47932996	ENSG00000266601.1|AC018521.6|lncRNA|chr17:47932971:47932996:-	0	-
#Deleted in new
chr17	47933087	47933106	ENSG00000266601.1|AC018521.6|lncRNA|chr17:47933087:47933106:-	0	-
#Partially deleted in new
chr17	47946613	47948272	ENSG00000108439.10|PNPO|pc|chr17:47946613:47948272:+	0	+
#Partially deleted in new
chr17	47946613	47949113	ENSG00000108439.10|PNPO|pc|chr17:47946613:47949113:+	0	+
#Partially deleted in new
chr17	47946613	47949267	ENSG00000108439.10|PNPO|pc|chr17:47946613:47949267:+	0	+
#Partially deleted in new
chr17	47946613	47949287	ENSG00000108439.10|PNPO|pc|chr17:47946613:47949287:+	0	+
#Partially deleted in new
chr17	47946801	47946855	ENSG00000264019.1|AC018521.2|lncRNA|chr17:47946801:47946855:-	0	-
#Deleted in new
chr17	47947554	47947642	ENSG00000264019.1|AC018521.2|lncRNA|chr17:47947554:47947642:-	0	-
#Deleted in new
chr17	47947890	47948275	ENSG00000264019.1|AC018521.2|lncRNA|chr17:47947890:47948275:-	0	-
#Deleted in new
chr17	47947930	47948272	ENSG00000264019.1|AC018521.2|lncRNA|chr17:47947930:47948272:-	0	-
#Partially deleted in new
chr17	47948053	47948848	ENSG00000263798.2|AC018521.1|lncRNA|chr17:47948053:47948848:+	0	+
#Deleted in new
chr17	48088165	48088307	ENSG00000108468.14|CBX1|pc|chr17:48088165:48088307:-	0	-
#Deleted in new
chr17	48100530	48100582	ENSG00000108468.14|CBX1|pc|chr17:48100530:48100582:-	0	-
#Deleted in new
chr17	48103356	48103389	ENSG00000002919.14|SNX11|pc|chr17:48103356:48103389:+	0	+
#Partially deleted in new
chr17	48112750	48112873	ENSG00000002919.14|SNX11|pc|chr17:48112750:48112873:+	0	+
#Partially deleted in new
chr17	48203991	48204529	ENSG00000263787.1|SKAP1-AS1|lncRNA|chr17:48203991:48204529:+	0	+
#Deleted in new
chr17	48231826	48231902	ENSG00000141293.15|SKAP1|pc|chr17:48231826:48231902:-	0	-
#Partially deleted in new
chr17	48248886	48249029	ENSG00000141293.15|SKAP1|pc|chr17:48248886:48249029:-	0	-
#Deleted in new
chr17	48377261	48377406	ENSG00000266222.1|AC036222.2|lncRNA|chr17:48377261:48377406:-	0	-
#Deleted in new
chr17	48608228	48608326	ENSG00000260027.4|HOXB7|pc|chr17:48608228:48608326:-	0	-
#Deleted in new
chr17	48652388	48652433	ENSG00000244649.4|LINC02086|lncRNA|chr17:48652388:48652433:+	0	+
#Deleted in new
chr17	48652870	48652974	ENSG00000244649.4|LINC02086|lncRNA|chr17:48652870:48652974:+	0	+
#Deleted in new
chr17	48680888	48681012	ENSG00000244649.4|LINC02086|lncRNA|chr17:48680888:48681012:+	0	+
#Deleted in new
chr17	48680946	48681012	ENSG00000244649.4|LINC02086|lncRNA|chr17:48680946:48681012:+	0	+
#Deleted in new
chr17	48682552	48682656	ENSG00000244649.4|LINC02086|lncRNA|chr17:48682552:48682656:+	0	+
#Deleted in new
chr17	48683238	48683417	ENSG00000244649.4|LINC02086|lncRNA|chr17:48683238:48683417:+	0	+
#Deleted in new
chr17	48683366	48683417	ENSG00000244649.4|LINC02086|lncRNA|chr17:48683366:48683417:+	0	+
#Deleted in new
chr17	48687496	48687710	ENSG00000244649.4|LINC02086|lncRNA|chr17:48687496:48687710:+	0	+
#Deleted in new
chr17	48700611	48700696	ENSG00000244649.4|LINC02086|lncRNA|chr17:48700611:48700696:+	0	+
#Partially deleted in new
chr17	48705202	48705350	ENSG00000244649.4|LINC02086|lncRNA|chr17:48705202:48705350:+	0	+
#Partially deleted in new
chr17	48721718	48721899	ENSG00000159182.4|PRAC1|pc|chr17:48721718:48721899:-	0	-
#Deleted in new
chr17	48794203	48794294	ENSG00000170703.15|TTLL6|pc|chr17:48794203:48794294:-	0	-
#Deleted in new
chr17	48794203	48794334	ENSG00000170703.15|TTLL6|pc|chr17:48794203:48794334:-	0	-
#Deleted in new
chr17	48800071	48800278	ENSG00000170703.15|TTLL6|pc|chr17:48800071:48800278:-	0	-
#Deleted in new
chr17	48806173	48806269	ENSG00000170703.15|TTLL6|pc|chr17:48806173:48806269:-	0	-
#Deleted in new
chr17	48812161	48812267	ENSG00000170703.15|TTLL6|pc|chr17:48812161:48812267:-	0	-
#Deleted in new
chr17	48839375	48839511	ENSG00000136436.14|CALCOCO2|pc|chr17:48839375:48839511:+	0	+
#Partially deleted in new
chr17	48841697	48842662	ENSG00000136436.14|CALCOCO2|pc|chr17:48841697:48842662:+	0	+
#Deleted in new
chr17	48842200	48842294	ENSG00000136436.14|CALCOCO2|pc|chr17:48842200:48842294:+	0	+
#Deleted in new
chr17	48842200	48842534	ENSG00000136436.14|CALCOCO2|pc|chr17:48842200:48842534:+	0	+
#Deleted in new
chr17	48843902	48844026	ENSG00000136436.14|CALCOCO2|pc|chr17:48843902:48844026:+	0	+
#Deleted in new
chr17	48846033	48846096	ENSG00000136436.14|CALCOCO2|pc|chr17:48846033:48846096:+	0	+
#Deleted in new
chr17	48846442	48846514	ENSG00000136436.14|CALCOCO2|pc|chr17:48846442:48846514:+	0	+
#Deleted in new
chr17	48848800	48848827	ENSG00000136436.14|CALCOCO2|pc|chr17:48848800:48848827:+	0	+
#Split in new
chr17	48851206	48851628	ENSG00000136436.14|CALCOCO2|pc|chr17:48851206:48851628:+	0	+
#Partially deleted in new
chr17	48852925	48853235	ENSG00000136436.14|CALCOCO2|pc|chr17:48852925:48853235:+	0	+
#Deleted in new
chr17	48855802	48856267	ENSG00000136436.14|CALCOCO2|pc|chr17:48855802:48856267:+	0	+
#Deleted in new
chr17	48856091	48856174	ENSG00000136436.14|CALCOCO2|pc|chr17:48856091:48856174:+	0	+
#Deleted in new
chr17	48856091	48856187	ENSG00000136436.14|CALCOCO2|pc|chr17:48856091:48856187:+	0	+
#Deleted in new
chr17	48856100	48856187	ENSG00000136436.14|CALCOCO2|pc|chr17:48856100:48856187:+	0	+
#Deleted in new
chr17	48856578	48856616	ENSG00000136436.14|CALCOCO2|pc|chr17:48856578:48856616:+	0	+
#Deleted in new
chr17	48860313	48860360	ENSG00000136436.14|CALCOCO2|pc|chr17:48860313:48860360:+	0	+
#Deleted in new
chr17	48860313	48860449	ENSG00000136436.14|CALCOCO2|pc|chr17:48860313:48860449:+	0	+
#Deleted in new
chr17	48862275	48862304	ENSG00000136436.14|CALCOCO2|pc|chr17:48862275:48862304:+	0	+
#Partially deleted in new
chr17	48862837	48863196	ENSG00000136436.14|CALCOCO2|pc|chr17:48862837:48863196:+	0	+
#Partially deleted in new
chr17	48862837	48863221	ENSG00000136436.14|CALCOCO2|pc|chr17:48862837:48863221:+	0	+
#Partially deleted in new
chr17	48862837	48863453	ENSG00000136436.14|CALCOCO2|pc|chr17:48862837:48863453:+	0	+
#Partially deleted in new
chr17	48862837	48865245	ENSG00000136436.14|CALCOCO2|pc|chr17:48862837:48865245:+	0	+
#Deleted in new
chr17	48865084	48865285	ENSG00000136436.14|CALCOCO2|pc|chr17:48865084:48865285:+	0	+
#Deleted in new
chr17	48866049	48866522	ENSG00000136436.14|CALCOCO2|pc|chr17:48866049:48866522:+	0	+
#Deleted in new
chr17	48894860	48894897	ENSG00000159199.13|ATP5G1|pc|chr17:48894860:48894897:+	0	+
#Deleted in new
chr17	48934478	48934576	ENSG00000159210.9|SNF8|pc|chr17:48934478:48934576:-	0	-
#Partially deleted in new
chr17	48935702	48936242	ENSG00000159210.9|SNF8|pc|chr17:48935702:48936242:-	0	-
#Deleted in new
chr17	48937280	48937291	ENSG00000159210.9|SNF8|pc|chr17:48937280:48937291:-	0	-
#Deleted in new
chr17	49012935	49013026	ENSG00000251461.3|AC091133.3|lncRNA|chr17:49012935:49013026:-	0	-
#Deleted in new
chr17	49036549	49036833	ENSG00000159217.9|IGF2BP1|pc|chr17:49036549:49036833:+	0	+
#Deleted in new
chr17	49036549	49036933	ENSG00000159217.9|IGF2BP1|pc|chr17:49036549:49036933:+	0	+
#Deleted in new
chr17	49132459	49132510	ENSG00000167080.8|B4GALNT2|pc|chr17:49132459:49132510:+	0	+
#Deleted in new
chr17	49132768	49132806	ENSG00000167080.8|B4GALNT2|pc|chr17:49132768:49132806:+	0	+
#Deleted in new
chr17	49132966	49133219	ENSG00000167080.8|B4GALNT2|pc|chr17:49132966:49133219:+	0	+
#Partially deleted in new
chr17	49169522	49176840	ENSG00000167080.8|B4GALNT2|pc|chr17:49169522:49176840:+	0	+
#Deleted in new
chr17	49202790	49203032	ENSG00000167083.6|GNGT2|pc|chr17:49202790:49203032:-	0	-
#Partially deleted in new
chr17	49254690	49256449	ENSG00000177369.8|FLJ40194|lncRNA|chr17:49254690:49256449:+	0	+
#Deleted in new
chr17	49258432	49258662	ENSG00000177369.8|FLJ40194|lncRNA|chr17:49258432:49258662:+	0	+
#Deleted in new
chr17	49322384	49322508	ENSG00000198740.8|ZNF652|pc|chr17:49322384:49322508:-	0	-
#Deleted in new
chr17	49364278	49364349	ENSG00000248714.6|AC091180.2|lncRNA|chr17:49364278:49364349:+	0	+
#Deleted in new
chr17	49365698	49366092	ENSG00000248714.6|AC091180.2|lncRNA|chr17:49365698:49366092:+	0	+
#Deleted in new
chr17	49365698	49366115	ENSG00000248714.6|AC091180.2|lncRNA|chr17:49365698:49366115:+	0	+
#Deleted in new
chr17	49370739	49370935	ENSG00000262039.1|AC091180.5|lncRNA|chr17:49370739:49370935:+	0	+
#Deleted in new
chr17	49373012	49373086	ENSG00000262039.1|AC091180.5|lncRNA|chr17:49373012:49373086:+	0	+
#Deleted in new
chr17	49375379	49375509	ENSG00000250948.1|AC091180.4|lncRNA|chr17:49375379:49375509:+	0	+
#Partially deleted in new
chr17	49458588	49458736	ENSG00000249497.1|LINC02075|lncRNA|chr17:49458588:49458736:-	0	-
#Deleted in new
chr1	74963313	74963367	ENSG00000229943.1|AC133865.1|lncRNA|chr1:74963313:74963367:+	0	+
#Deleted in new
chr17	49636196	49636313	ENSG00000121067.17|SPOP|pc|chr17:49636196:49636313:-	0	-
#Partially deleted in new
chr17	4965829	4966319	ENSG00000091640.7|SPAG7|pc|chr17:4965829:4966319:-	0	-
#Deleted in new
chr17	49668026	49668078	ENSG00000121067.17|SPOP|pc|chr17:49668026:49668078:-	0	-
#Partially deleted in new
chr17	49675894	49676016	ENSG00000121067.17|SPOP|pc|chr17:49675894:49676016:-	0	-
#Deleted in new
chr17	49701829	49701922	ENSG00000121073.13|SLC35B1|pc|chr17:49701829:49701922:-	0	-
#Partially deleted in new
chr17	49732279	49732377	ENSG00000121104.7|FAM117A|pc|chr17:49732279:49732377:-	0	-
#Deleted in new
chr17	49773341	49773457	ENSG00000121104.7|FAM117A|pc|chr17:49773341:49773457:-	0	-
#Deleted in new
chr17	4979384	4979442	ENSG00000108509.20|CAMTA2|pc|chr17:4979384:4979442:-	0	-
#Deleted in new
chr17	49814951	49815074	ENSG00000136504.11|KAT7|pc|chr17:49814951:49815074:+	0	+
#Deleted in new
chr17	49815030	49815074	ENSG00000136504.11|KAT7|pc|chr17:49815030:49815074:+	0	+
#Deleted in new
chr17	49815331	49815612	ENSG00000136504.11|KAT7|pc|chr17:49815331:49815612:+	0	+
#Deleted in new
chr17	49815389	49815612	ENSG00000136504.11|KAT7|pc|chr17:49815389:49815612:+	0	+
#Deleted in new
chr17	49815397	49815464	ENSG00000136504.11|KAT7|pc|chr17:49815397:49815464:+	0	+
#Deleted in new
chr17	49824481	49824740	ENSG00000136504.11|KAT7|pc|chr17:49824481:49824740:+	0	+
#Deleted in new
chr17	49834238	49834553	ENSG00000262837.1|AC027801.5|lncRNA|chr17:49834238:49834553:+	0	+
#Deleted in new
chr17	49836353	49836454	ENSG00000262837.1|AC027801.5|lncRNA|chr17:49836353:49836454:+	0	+
#Deleted in new
chr17	4983697	4983760	ENSG00000108509.20|CAMTA2|pc|chr17:4983697:4983760:-	0	-
#Deleted in new
chr17	49841551	49841584	ENSG00000176358.15|TAC4|pc|chr17:49841551:49841584:-	0	-
#Deleted in new
chr17	49846144	49846241	ENSG00000204584.1|AC027801.1|lncRNA|chr17:49846144:49846241:+	0	+
#Deleted in new
chr17	49888110	49888317	ENSG00000248954.1|AC027801.2|lncRNA|chr17:49888110:49888317:+	0	+
#Partially deleted in new
chr17	49896025	49896112	ENSG00000248954.1|AC027801.2|lncRNA|chr17:49896025:49896112:+	0	+
#Deleted in new
chr17	4995805	4995930	ENSG00000196388.8|INCA1|pc|chr17:4995805:4995930:-	0	-
#Deleted in new
chr17	50104323	50104393	ENSG00000005882.11|PDK2|pc|chr17:50104323:50104393:+	0	+
#Deleted in new
chr17	5014193	5014306	ENSG00000129250.11|KIF1C|pc|chr17:5014193:5014306:+	0	+
#Deleted in new
chr17	50158332	50158623	ENSG00000253730.1|AC015909.2|lncRNA|chr17:50158332:50158623:-	0	-
#Partially deleted in new
chr17	50214100	50214459	ENSG00000249406.1|AC015909.1|lncRNA|chr17:50214100:50214459:+	0	+
#Deleted in new
chr17	50214693	50214775	ENSG00000251085.1|LINC01969|lncRNA|chr17:50214693:50214775:+	0	+
#Deleted in new
chr17	50214840	50214944	ENSG00000263176.1|AC015909.4|lncRNA|chr17:50214840:50214944:-	0	-
#Deleted in new
chr17	50214919	50214982	ENSG00000251085.1|LINC01969|lncRNA|chr17:50214919:50214982:+	0	+
#Partially deleted in new
chr17	50215021	50215357	ENSG00000263176.1|AC015909.4|lncRNA|chr17:50215021:50215357:-	0	-
#Partially deleted in new
chr17	50215110	50215420	ENSG00000251085.1|LINC01969|lncRNA|chr17:50215110:50215420:+	0	+
#Deleted in new
chr17	50271405	50271489	ENSG00000167105.7|TMEM92|pc|chr17:50271405:50271489:+	0	+
#Deleted in new
chr17	50282467	50282551	ENSG00000251179.1|TMEM92-AS1|lncRNA|chr17:50282467:50282551:-	0	-
#Deleted in new
chr17	50283957	50284207	ENSG00000251179.1|TMEM92-AS1|lncRNA|chr17:50283957:50284207:-	0	-
#Deleted in new
chr17	50287739	50287855	ENSG00000251179.1|TMEM92-AS1|lncRNA|chr17:50287739:50287855:-	0	-
#Deleted in new
chr17	503170	503296	ENSG00000263015.1|AC015853.2|lncRNA|chr17:503170:503296:+	0	+
#Partially deleted in new
chr17	5034860	5035422	ENSG00000132517.14|SLC52A1|pc|chr17:5034860:5035422:-	0	-
#Partially deleted in new
chr17	5034860	5035424	ENSG00000132517.14|SLC52A1|pc|chr17:5034860:5035424:-	0	-
#Partially deleted in new
chr17	5034860	5035426	ENSG00000132517.14|SLC52A1|pc|chr17:5034860:5035426:-	0	-
#Partially deleted in new
chr17	5034860	5035432	ENSG00000132517.14|SLC52A1|pc|chr17:5034860:5035432:-	0	-
#Partially deleted in new
chr17	50362966	50365232	ENSG00000279792.1|AC015909.5|lncRNA|chr17:50362966:50365232:-	0	-
#Deleted in new
chr17	50362978	50363138	ENSG00000015532.9|XYLT2|pc|chr17:50362978:50363138:+	0	+
#Partially deleted in new
chr17	50474501	50474774	ENSG00000167107.12|ACSF2|pc|chr17:50474501:50474774:+	0	+
#Split in new
chr17	50475818	50478391	ENSG00000275897.1|AC021491.4|lncRNA|chr17:50475818:50478391:+	0	+
#Partially deleted in new
chr17	50484028	50484545	ENSG00000136444.9|RSAD1|pc|chr17:50484028:50484545:+	0	+
#Deleted in new
chr17	5050704	5052009	ENSG00000132517.14|SLC52A1|pc|chr17:5050704:5052009:-	0	-
#Partially deleted in new
chr17	50514844	50514949	ENSG00000136449.13|MYCBPAP|pc|chr17:50514844:50514949:+	0	+
#Deleted in new
chr17	50515858	50516093	ENSG00000136449.13|MYCBPAP|pc|chr17:50515858:50516093:+	0	+
#Deleted in new
chr17	50519970	50520221	ENSG00000136449.13|MYCBPAP|pc|chr17:50519970:50520221:+	0	+
#Partially deleted in new
chr17	50530153	50530312	ENSG00000136449.13|MYCBPAP|pc|chr17:50530153:50530312:+	0	+
#Deleted in new
chr17	50530212	50530239	ENSG00000136449.13|MYCBPAP|pc|chr17:50530212:50530239:+	0	+
#Deleted in new
chr17	50530212	50530312	ENSG00000136449.13|MYCBPAP|pc|chr17:50530212:50530312:+	0	+
#Partially deleted in new
chr17	50536048	50536199	ENSG00000049283.17|EPN3|pc|chr17:50536048:50536199:+	0	+
#Partially deleted in new
chr17	50606899	50607510	ENSG00000006283.17|CACNA1G|pc|chr17:50606899:50607510:+	0	+
#Partially deleted in new
chr17	50635522	50635915	ENSG00000108846.15|ABCC3|pc|chr17:50635522:50635915:+	0	+
#Partially deleted in new
chr17	50674215	50674450	ENSG00000108846.15|ABCC3|pc|chr17:50674215:50674450:+	0	+
#Deleted in new
chr17	50688410	50688475	ENSG00000108846.15|ABCC3|pc|chr17:50688410:50688475:+	0	+
#Partially deleted in new
chr17	50722073	50724224	ENSG00000278963.1|AC005921.3|lncRNA|chr17:50722073:50724224:+	0	+
#Deleted in new
chr17	50722663	50722745	ENSG00000108848.15|LUC7L3|pc|chr17:50722663:50722745:+	0	+
#Deleted in new
chr17	50723818	50723965	ENSG00000108848.15|LUC7L3|pc|chr17:50723818:50723965:+	0	+
#Deleted in new
chr17	50748388	50748416	ENSG00000108848.15|LUC7L3|pc|chr17:50748388:50748416:+	0	+
#Deleted in new
chr17	5075677	5075940	ENSG00000262693.1|AC012146.3|lncRNA|chr17:5075677:5075940:-	0	-
#Partially deleted in new
chr17	50761028	50761506	ENSG00000167117.8|LINC00483|lncRNA|chr17:50761028:50761506:-	0	-
#Deleted in new
chr17	50764778	50765036	ENSG00000167117.8|LINC00483|lncRNA|chr17:50764778:50765036:-	0	-
#Partially deleted in new
chr17	50767215	50767322	ENSG00000167117.8|LINC00483|lncRNA|chr17:50767215:50767322:-	0	-
#Deleted in new
chr17	50767462	50767516	ENSG00000167117.8|LINC00483|lncRNA|chr17:50767462:50767516:-	0	-
#Deleted in new
chr17	50767462	50767517	ENSG00000167117.8|LINC00483|lncRNA|chr17:50767462:50767517:-	0	-
#Deleted in new
chr17	50767462	50767557	ENSG00000167117.8|LINC00483|lncRNA|chr17:50767462:50767557:-	0	-
#Deleted in new
chr17	50908835	50908923	ENSG00000229980.4|TOB1-AS1|lncRNA|chr17:50908835:50908923:+	0	+
#Deleted in new
chr17	50908835	50908956	ENSG00000229980.4|TOB1-AS1|lncRNA|chr17:50908835:50908956:+	0	+
#Deleted in new
chr17	50990022	50990164	ENSG00000008294.20|SPAG9|pc|chr17:50990022:50990164:-	0	-
#Deleted in new
chr17	51016225	51016256	ENSG00000008294.20|SPAG9|pc|chr17:51016225:51016256:-	0	-
#Deleted in new
chr17	51040427	51040451	ENSG00000008294.20|SPAG9|pc|chr17:51040427:51040451:-	0	-
#Deleted in new
chr17	51042523	51042555	ENSG00000249870.1|AC005920.2|lncRNA|chr17:51042523:51042555:+	0	+
#Deleted in new
chr17	51084125	51084250	ENSG00000249870.1|AC005920.2|lncRNA|chr17:51084125:51084250:+	0	+
#Deleted in new
chr17	51085296	51085471	ENSG00000249870.1|AC005920.2|lncRNA|chr17:51085296:51085471:+	0	+
#Deleted in new
chr17	5108785	5108807	ENSG00000167840.13|ZNF232|pc|chr17:5108785:5108807:-	0	-
#Deleted in new
chr17	5111075	5111219	ENSG00000167840.13|ZNF232|pc|chr17:5111075:5111219:-	0	-
#Deleted in new
chr17	5111467	5111640	ENSG00000234327.7|AC012146.1|lncRNA|chr17:5111467:5111640:+	0	+
#Deleted in new
chr17	5111799	5111815	ENSG00000167840.13|ZNF232|pc|chr17:5111799:5111815:-	0	-
#Deleted in new
chr17	5111799	5111841	ENSG00000167840.13|ZNF232|pc|chr17:5111799:5111841:-	0	-
#Deleted in new
chr17	5111799	5111845	ENSG00000167840.13|ZNF232|pc|chr17:5111799:5111845:-	0	-
#Deleted in new
chr17	5111799	5112064	ENSG00000167840.13|ZNF232|pc|chr17:5111799:5112064:-	0	-
#Deleted in new
chr17	5111799	5112351	ENSG00000167840.13|ZNF232|pc|chr17:5111799:5112351:-	0	-
#Deleted in new
chr17	5111931	5112118	ENSG00000234327.7|AC012146.1|lncRNA|chr17:5111931:5112118:+	0	+
#Partially deleted in new
chr17	5113358	5115004	ENSG00000234327.7|AC012146.1|lncRNA|chr17:5113358:5115004:+	0	+
#Deleted in new
chr17	5113385	5113452	ENSG00000234327.7|AC012146.1|lncRNA|chr17:5113385:5113452:+	0	+
#Deleted in new
chr17	5113772	5113979	ENSG00000234327.7|AC012146.1|lncRNA|chr17:5113772:5113979:+	0	+
#Partially deleted in new
chr17	51159979	51160602	ENSG00000239672.7|NME1|pc|chr17:51159979:51160602:+	0	+
#Deleted in new
chr17	5116437	5116740	ENSG00000129204.16|USP6|pc|chr17:5116437:5116740:+	0	+
#Deleted in new
chr17	5118199	5118290	ENSG00000129204.16|USP6|pc|chr17:5118199:5118290:+	0	+
#Deleted in new
chr17	5124565	5125272	ENSG00000129204.16|USP6|pc|chr17:5124565:5125272:+	0	+
#Deleted in new
chr17	51249578	51251748	ENSG00000264895.1|AC006141.1|lncRNA|chr17:51249578:51251748:-	0	-
#Deleted in new
chr17	5125820	5125938	ENSG00000129204.16|USP6|pc|chr17:5125820:5125938:+	0	+
#Deleted in new
chr17	5128391	5130089	ENSG00000129204.16|USP6|pc|chr17:5128391:5130089:+	0	+
#Deleted in new
chr17	5128765	5128922	ENSG00000129204.16|USP6|pc|chr17:5128765:5128922:+	0	+
#Deleted in new
chr17	5128814	5128922	ENSG00000129204.16|USP6|pc|chr17:5128814:5128922:+	0	+
#Deleted in new
chr17	5128951	5129133	ENSG00000129204.16|USP6|pc|chr17:5128951:5129133:+	0	+
#Deleted in new
chr17	5129935	5130089	ENSG00000129204.16|USP6|pc|chr17:5129935:5130089:+	0	+
#Deleted in new
chr17	5130366	5130439	ENSG00000129204.16|USP6|pc|chr17:5130366:5130439:+	0	+
#Deleted in new
chr17	5130601	5130684	ENSG00000129204.16|USP6|pc|chr17:5130601:5130684:+	0	+
#Deleted in new
chr17	51312608	51312784	ENSG00000249383.1|LINC02071|lncRNA|chr17:51312608:51312784:-	0	-
#Deleted in new
chr17	51321585	51321676	ENSG00000249383.1|LINC02071|lncRNA|chr17:51321585:51321676:-	0	-
#Deleted in new
chr17	5132212	5132435	ENSG00000129204.16|USP6|pc|chr17:5132212:5132435:+	0	+
#Deleted in new
chr17	5132395	5132435	ENSG00000129204.16|USP6|pc|chr17:5132395:5132435:+	0	+
#Deleted in new
chr17	5132909	5132990	ENSG00000129204.16|USP6|pc|chr17:5132909:5132990:+	0	+
#Deleted in new
chr17	51332678	51332750	ENSG00000249982.1|AC005823.2|lncRNA|chr17:51332678:51332750:+	0	+
#Deleted in new
chr17	51332999	51333128	ENSG00000249383.1|LINC02071|lncRNA|chr17:51332999:51333128:-	0	-
#Deleted in new
chr17	51334345	51335165	ENSG00000249383.1|LINC02071|lncRNA|chr17:51334345:51335165:-	0	-
#Deleted in new
chr17	5133442	5133550	ENSG00000129204.16|USP6|pc|chr17:5133442:5133550:+	0	+
#Deleted in new
chr17	51336061	51336240	ENSG00000249658.1|AC005823.1|lncRNA|chr17:51336061:51336240:+	0	+
#Partially deleted in new
chr17	51336714	51337920	ENSG00000225860.2|LINC02072|lncRNA|chr17:51336714:51337920:+	0	+
#Partially deleted in new
chr17	5133886	5135003	ENSG00000129204.16|USP6|pc|chr17:5133886:5135003:+	0	+
#Deleted in new
chr17	51339606	51339724	ENSG00000225860.2|LINC02072|lncRNA|chr17:51339606:51339724:+	0	+
#Deleted in new
chr17	5135233	5135282	ENSG00000129204.16|USP6|pc|chr17:5135233:5135282:+	0	+
#Deleted in new
chr17	5136639	5136734	ENSG00000129204.16|USP6|pc|chr17:5136639:5136734:+	0	+
#Deleted in new
chr17	5137120	5137186	ENSG00000129204.16|USP6|pc|chr17:5137120:5137186:+	0	+
#Deleted in new
chr17	5137650	5137750	ENSG00000129204.16|USP6|pc|chr17:5137650:5137750:+	0	+
#Deleted in new
chr17	5138120	5138273	ENSG00000129204.16|USP6|pc|chr17:5138120:5138273:+	0	+
#Deleted in new
chr17	5138970	5139181	ENSG00000129204.16|USP6|pc|chr17:5138970:5139181:+	0	+
#Deleted in new
chr17	5139254	5139674	ENSG00000129204.16|USP6|pc|chr17:5139254:5139674:+	0	+
#Deleted in new
chr17	51435426	51435696	ENSG00000267452.1|LINC02073|lncRNA|chr17:51435426:51435696:+	0	+
#Deleted in new
chr17	51443733	51443802	ENSG00000267452.1|LINC02073|lncRNA|chr17:51443733:51443802:+	0	+
#Deleted in new
chr17	51443733	51445802	ENSG00000267452.1|LINC02073|lncRNA|chr17:51443733:51445802:+	0	+
#Partially deleted in new
chr17	517381	517639	ENSG00000141252.19|VPS53|pc|chr17:517381:517639:-	0	-
#Deleted in new
chr17	5191431	5191862	ENSG00000180626.9|ZNF594|pc|chr17:5191431:5191862:-	0	-
#Deleted in new
chr17	5191747	5191883	ENSG00000180626.9|ZNF594|pc|chr17:5191747:5191883:-	0	-
#Deleted in new
chr17	5192083	5192163	ENSG00000261879.5|AC087500.1|lncRNA|chr17:5192083:5192163:+	0	+
#Deleted in new
chr17	5192103	5192163	ENSG00000261879.5|AC087500.1|lncRNA|chr17:5192103:5192163:+	0	+
#Deleted in new
chr17	52070438	52070523	ENSG00000154975.13|CA10|pc|chr17:52070438:52070523:-	0	-
#Deleted in new
chr17	5209749	5209895	ENSG00000261879.5|AC087500.1|lncRNA|chr17:5209749:5209895:+	0	+
#Deleted in new
chr17	5213011	5214836	ENSG00000161929.14|SCIMP|pc|chr17:5213011:5214836:-	0	-
#Deleted in new
chr17	5214049	5214209	ENSG00000261879.5|AC087500.1|lncRNA|chr17:5214049:5214209:+	0	+
#Deleted in new
chr17	5214655	5214836	ENSG00000161929.14|SCIMP|pc|chr17:5214655:5214836:-	0	-
#Partially deleted in new
chr17	522924	522995	ENSG00000141252.19|VPS53|pc|chr17:522924:522995:-	0	-
#Deleted in new
chr17	5240507	5240586	ENSG00000263164.1|AC087500.2|lncRNA|chr17:5240507:5240586:-	0	-
#Deleted in new
chr17	5240959	5241040	ENSG00000263164.1|AC087500.2|lncRNA|chr17:5240959:5241040:-	0	-
#Deleted in new
chr17	5241205	5241543	ENSG00000263164.1|AC087500.2|lncRNA|chr17:5241205:5241543:-	0	-
#Deleted in new
chr17	5247773	5248069	ENSG00000261879.5|AC087500.1|lncRNA|chr17:5247773:5248069:+	0	+
#Deleted in new
chr17	52532531	52532594	ENSG00000263317.1|LINC01982|lncRNA|chr17:52532531:52532594:+	0	+
#Deleted in new
chr17	52534732	52534824	ENSG00000263317.1|LINC01982|lncRNA|chr17:52534732:52534824:+	0	+
#Deleted in new
chr17	52535624	52535701	ENSG00000263317.1|LINC01982|lncRNA|chr17:52535624:52535701:+	0	+
#Deleted in new
chr17	52862120	52862471	ENSG00000226364.1|LINC02089|lncRNA|chr17:52862120:52862471:+	0	+
#Deleted in new
chr17	52898433	52898506	ENSG00000226364.1|LINC02089|lncRNA|chr17:52898433:52898506:+	0	+
#Deleted in new
chr17	52987255	52987652	ENSG00000227011.3|C17orf112|lncRNA|chr17:52987255:52987652:+	0	+
#Deleted in new
chr1	75311614	75311705	ENSG00000137968.16|SLC44A5|pc|chr1:75311614:75311705:-	0	-
#Partially deleted in new
chr17	531967	532911	ENSG00000141252.19|VPS53|pc|chr17:531967:532911:-	0	-
#Partially deleted in new
chr17	532317	532911	ENSG00000141252.19|VPS53|pc|chr17:532317:532911:-	0	-
#Deleted in new
chr17	5336487	5336689	ENSG00000029725.16|RABEP1|pc|chr17:5336487:5336689:+	0	+
#Deleted in new
chr17	5364314	5364445	ENSG00000263220.1|AC015727.1|lncRNA|chr17:5364314:5364445:-	0	-
#Deleted in new
chr17	5371245	5371626	ENSG00000263220.1|AC015727.1|lncRNA|chr17:5371245:5371626:-	0	-
#Deleted in new
chr1	75398354	75398421	ENSG00000137968.16|SLC44A5|pc|chr1:75398354:75398421:-	0	-
#Deleted in new
chr17	540388	540576	ENSG00000263300.1|AC015853.3|lncRNA|chr17:540388:540576:+	0	+
#Deleted in new
chr17	5418014	5418116	ENSG00000108559.11|NUP88|pc|chr17:5418014:5418116:-	0	-
#Deleted in new
chr17	5418014	5418141	ENSG00000108559.11|NUP88|pc|chr17:5418014:5418141:-	0	-
#Deleted in new
chr17	5418014	5418229	ENSG00000108559.11|NUP88|pc|chr17:5418014:5418229:-	0	-
#Deleted in new
chr17	5425138	5425493	ENSG00000263272.1|AC004148.2|lncRNA|chr17:5425138:5425493:-	0	-
#Partially deleted in new
chr17	5425970	5428211	ENSG00000129197.14|RPAIN|pc|chr17:5425970:5428211:+	0	+
#Partially deleted in new
chr17	5428070	5431484	ENSG00000129197.14|RPAIN|pc|chr17:5428070:5431484:+	0	+
#Partially deleted in new
chr17	5431293	5432876	ENSG00000263272.1|AC004148.2|lncRNA|chr17:5431293:5432876:-	0	-
#Deleted in new
chr17	5470091	5470360	ENSG00000262099.1|AC004148.1|lncRNA|chr17:5470091:5470360:+	0	+
#Deleted in new
chr17	5477896	5477999	ENSG00000072849.10|DERL2|pc|chr17:5477896:5477999:-	0	-
#Partially deleted in new
chr17	5487000	5487159	ENSG00000167842.15|MIS12|pc|chr17:5487000:5487159:+	0	+
#Deleted in new
chr17	5487556	5487694	ENSG00000167842.15|MIS12|pc|chr17:5487556:5487694:+	0	+
#Deleted in new
chr17	54942288	54942491	ENSG00000141198.15|TOM1L1|pc|chr17:54942288:54942491:+	0	+
#Deleted in new
chr17	54951901	54952112	ENSG00000166260.11|COX11|pc|chr17:54951901:54952112:-	0	-
#Deleted in new
chr17	54951905	54952112	ENSG00000166260.11|COX11|pc|chr17:54951905:54952112:-	0	-
#Deleted in new
chr17	54951905	54955149	ENSG00000166260.11|COX11|pc|chr17:54951905:54955149:-	0	-
#Deleted in new
chr17	54951908	54952112	ENSG00000166260.11|COX11|pc|chr17:54951908:54952112:-	0	-
#Deleted in new
chr17	54951934	54952112	ENSG00000166260.11|COX11|pc|chr17:54951934:54952112:-	0	-
#Deleted in new
chr17	54953660	54953759	ENSG00000166260.11|COX11|pc|chr17:54953660:54953759:-	0	-
#Deleted in new
chr17	54953660	54954105	ENSG00000166260.11|COX11|pc|chr17:54953660:54954105:-	0	-
#Deleted in new
chr17	54956759	54958426	ENSG00000279059.1|AC007485.2|lncRNA|chr17:54956759:54958426:-	0	-
#Deleted in new
chr17	54959200	54959466	ENSG00000166260.11|COX11|pc|chr17:54959200:54959466:-	0	-
#Deleted in new
chr17	54959279	54959494	ENSG00000141198.15|TOM1L1|pc|chr17:54959279:54959494:+	0	+
#Deleted in new
chr17	54964473	54964679	ENSG00000275710.1|AC007485.1|lncRNA|chr17:54964473:54964679:+	0	+
#Deleted in new
chr17	5502291	5505977	ENSG00000091592.15|NLRP1|pc|chr17:5502291:5505977:-	0	-
#Partially deleted in new
chr17	5517745	5518565	ENSG00000091592.15|NLRP1|pc|chr17:5517745:5518565:-	0	-
#Deleted in new
chr17	552565	552916	ENSG00000262905.1|AC015853.1|lncRNA|chr17:552565:552916:+	0	+
#Partially deleted in new
chr17	55288880	55288983	ENSG00000108924.13|HLF|pc|chr17:55288880:55288983:+	0	+
#Deleted in new
chr17	5529894	5530058	ENSG00000091592.15|NLRP1|pc|chr17:5529894:5530058:-	0	-
#Deleted in new
chr17	55325756	55327303	ENSG00000262079.1|AC007638.1|lncRNA|chr17:55325756:55327303:-	0	-
#Deleted in new
chr17	55327575	55327791	ENSG00000262079.1|AC007638.1|lncRNA|chr17:55327575:55327791:-	0	-
#Deleted in new
chr17	5533291	5533384	ENSG00000091592.15|NLRP1|pc|chr17:5533291:5533384:-	0	-
#Deleted in new
chr17	5533303	5533384	ENSG00000091592.15|NLRP1|pc|chr17:5533303:5533384:-	0	-
#Deleted in new
chr17	55468065	55468401	ENSG00000261873.2|AC006269.1|pc|chr17:55468065:55468401:-	0	-
#Deleted in new
chr17	55477054	55477172	ENSG00000261873.2|AC006269.1|pc|chr17:55477054:55477172:-	0	-
#Deleted in new
chr17	55478761	55478813	ENSG00000261873.2|AC006269.1|pc|chr17:55478761:55478813:-	0	-
#Deleted in new
chr17	55479459	55479580	ENSG00000261873.2|AC006269.1|pc|chr17:55479459:55479580:-	0	-
#Deleted in new
chr17	55727800	55727982	ENSG00000166292.11|TMEM100|pc|chr17:55727800:55727982:-	0	-
#Deleted in new
chr17	55751399	55751477	ENSG00000141179.13|PCTP|pc|chr17:55751399:55751477:+	0	+
#Deleted in new
chr17	55787565	55787654	ENSG00000141179.13|PCTP|pc|chr17:55787565:55787654:+	0	+
#Deleted in new
chr17	5581858	5582062	ENSG00000091592.15|NLRP1|pc|chr17:5581858:5582062:-	0	-
#Deleted in new
chr17	5583686	5583957	ENSG00000091592.15|NLRP1|pc|chr17:5583686:5583957:-	0	-
#Deleted in new
chr17	5583686	5583959	ENSG00000091592.15|NLRP1|pc|chr17:5583686:5583959:-	0	-
#Deleted in new
chr17	5583686	5584103	ENSG00000091592.15|NLRP1|pc|chr17:5583686:5584103:-	0	-
#Deleted in new
chr17	5583686	5584479	ENSG00000091592.15|NLRP1|pc|chr17:5583686:5584479:-	0	-
#Deleted in new
chr17	5583686	5584509	ENSG00000091592.15|NLRP1|pc|chr17:5583686:5584509:-	0	-
#Deleted in new
chr17	5583686	5584531	ENSG00000091592.15|NLRP1|pc|chr17:5583686:5584531:-	0	-
#Deleted in new
chr17	5583850	5584103	ENSG00000091592.15|NLRP1|pc|chr17:5583850:5584103:-	0	-
#Deleted in new
chr17	5584016	5584500	ENSG00000091592.15|NLRP1|pc|chr17:5584016:5584500:-	0	-
#Deleted in new
chr17	5584292	5584448	ENSG00000091592.15|NLRP1|pc|chr17:5584292:5584448:-	0	-
#Deleted in new
chr17	5584292	5584500	ENSG00000091592.15|NLRP1|pc|chr17:5584292:5584500:-	0	-
#Deleted in new
chr17	5584292	5584512	ENSG00000091592.15|NLRP1|pc|chr17:5584292:5584512:-	0	-
#Deleted in new
chr17	55857017	55857273	ENSG00000262052.1|AC090618.1|lncRNA|chr17:55857017:55857273:-	0	-
#Deleted in new
chr17	55872806	55872939	ENSG00000262052.1|AC090618.1|lncRNA|chr17:55872806:55872939:-	0	-
#Deleted in new
chr17	55882300	55882395	ENSG00000153930.11|ANKFN1|pc|chr17:55882300:55882395:+	0	+
#Deleted in new
chr17	55938658	55938786	ENSG00000153930.11|ANKFN1|pc|chr17:55938658:55938786:+	0	+
#Deleted in new
chr17	5619330	5619424	ENSG00000091592.15|NLRP1|pc|chr17:5619330:5619424:-	0	-
#Deleted in new
chr17	56195313	56195382	ENSG00000153930.11|ANKFN1|pc|chr17:56195313:56195382:+	0	+
#Deleted in new
chr17	56206485	56206578	ENSG00000153930.11|ANKFN1|pc|chr17:56206485:56206578:+	0	+
#Deleted in new
chr17	56206924	56206968	ENSG00000153930.11|ANKFN1|pc|chr17:56206924:56206968:+	0	+
#Deleted in new
chr17	56224638	56224950	ENSG00000153930.11|ANKFN1|pc|chr17:56224638:56224950:+	0	+
#Deleted in new
chr17	56252221	56252308	ENSG00000153930.11|ANKFN1|pc|chr17:56252221:56252308:+	0	+
#Deleted in new
chr17	56462103	56462184	ENSG00000153930.11|ANKFN1|pc|chr17:56462103:56462184:+	0	+
#Deleted in new
chr17	56463823	56463906	ENSG00000153930.11|ANKFN1|pc|chr17:56463823:56463906:+	0	+
#Deleted in new
chr17	56825080	56825321	ENSG00000214226.8|C17orf67|pc|chr17:56825080:56825321:-	0	-
#Deleted in new
chr17	56838488	56838773	ENSG00000214226.8|C17orf67|pc|chr17:56838488:56838773:-	0	-
#Partially deleted in new
chr17	56847359	56847429	ENSG00000153933.9|DGKE|pc|chr17:56847359:56847429:+	0	+
#Partially deleted in new
chr17	56847515	56847658	ENSG00000153933.9|DGKE|pc|chr17:56847515:56847658:+	0	+
#Deleted in new
chr17	56908746	56908783	ENSG00000121060.16|TRIM25|pc|chr17:56908746:56908783:-	0	-
#Deleted in new
chr17	56912104	56912165	ENSG00000121060.16|TRIM25|pc|chr17:56912104:56912165:-	0	-
#Partially deleted in new
chr17	56912758	56913117	ENSG00000121060.16|TRIM25|pc|chr17:56912758:56913117:-	0	-
#Partially deleted in new
chr17	56941034	56941275	ENSG00000262298.1|AC004584.1|lncRNA|chr17:56941034:56941275:+	0	+
#Split in new
chr17	56951421	56951714	ENSG00000121058.4|COIL|pc|chr17:56951421:56951714:-	0	-
#Deleted in new
chr17	56987240	56987332	ENSG00000121064.12|SCPEP1|pc|chr17:56987240:56987332:+	0	+
#Partially deleted in new
chr17	56997967	56998325	ENSG00000121064.12|SCPEP1|pc|chr17:56997967:56998325:+	0	+
#Deleted in new
chr1	75710002	75710560	ENSG00000178193.5|AL357314.1|lncRNA|chr1:75710002:75710560:-	0	-
#Deleted in new
chr17	57101593	57101730	ENSG00000121057.12|AKAP1|pc|chr17:57101593:57101730:+	0	+
#Deleted in new
chr1	75720348	75720405	ENSG00000178193.5|AL357314.1|lncRNA|chr1:75720348:75720405:-	0	-
#Deleted in new
chr1	75723667	75723788	ENSG00000178193.5|AL357314.1|lncRNA|chr1:75723667:75723788:-	0	-
#Deleted in new
chr1	75723941	75724011	ENSG00000178193.5|AL357314.1|lncRNA|chr1:75723941:75724011:-	0	-
#Partially deleted in new
chr17	57277919	57280017	ENSG00000279555.1|AC091181.1|lncRNA|chr17:57277919:57280017:+	0	+
#Partially deleted in new
chr1	75733050	75733339	ENSG00000117054.13|ACADM|pc|chr1:75733050:75733339:+	0	+
#Deleted in new
chr17	57444486	57444752	ENSG00000153944.10|MSI2|pc|chr17:57444486:57444752:+	0	+
#Deleted in new
chr1	75750769	75750891	ENSG00000117054.13|ACADM|pc|chr1:75750769:75750891:+	0	+
#Deleted in new
chr17	57531768	57532355	ENSG00000280028.1|AC007431.3|lncRNA|chr17:57531768:57532355:+	0	+
#Deleted in new
chr1	75754932	75755089	ENSG00000117054.13|ACADM|pc|chr1:75754932:75755089:+	0	+
#Deleted in new
chr17	57608259	57608412	ENSG00000263499.1|AC007431.1|lncRNA|chr17:57608259:57608412:-	0	-
#Deleted in new
chr1	75769176	75769242	ENSG00000117054.13|ACADM|pc|chr1:75769176:75769242:+	0	+
#Deleted in new
chr17	5772233	5773027	ENSG00000179314.13|WSCD1|pc|chr17:5772233:5773027:+	0	+
#Deleted in new
chr17	5772925	5773027	ENSG00000179314.13|WSCD1|pc|chr17:5772925:5773027:+	0	+
#Deleted in new
chr17	57922395	57922581	ENSG00000264914.1|AC015845.1|lncRNA|chr17:57922395:57922581:+	0	+
#Partially deleted in new
chr1	75793381	75794233	ENSG00000137955.15|RABGGTB|pc|chr1:75793381:75794233:+	0	+
#Deleted in new
chr1	75796881	75797229	ENSG00000057468.6|MSH4|pc|chr1:75796881:75797229:+	0	+
#Partially deleted in new
chr17	58076890	58079259	ENSG00000266290.1|AC015813.3|lncRNA|chr17:58076890:58079259:-	0	-
#Deleted in new
chr17	58095671	58101479	ENSG00000279207.1|AC015813.6|lncRNA|chr17:58095671:58101479:+	0	+
#Partially deleted in new
chr17	58202351	58203003	ENSG00000278627.1|AC005962.2|lncRNA|chr17:58202351:58203003:-	0	-
#Partially deleted in new
chr17	58237736	58237834	ENSG00000167419.10|LPO|pc|chr17:58237736:58237834:+	0	+
#Deleted in new
chr17	58254552	58254611	ENSG00000167419.10|LPO|pc|chr17:58254552:58254611:+	0	+
#Deleted in new
chr17	5837180	5837216	ENSG00000179314.13|WSCD1|pc|chr17:5837180:5837216:+	0	+
#Deleted in new
chr17	5837180	5837249	ENSG00000179314.13|WSCD1|pc|chr17:5837180:5837249:+	0	+
#Deleted in new
chr17	58510596	58510631	ENSG00000108389.9|MTMR4|pc|chr17:58510596:58510631:-	0	-
#Deleted in new
chr17	58519836	58519977	ENSG00000264672.5|SEPT4-AS1|lncRNA|chr17:58519836:58519977:+	0	+
#Deleted in new
chr17	58564156	58564258	ENSG00000121101.15|TEX14|pc|chr17:58564156:58564258:-	0	-
#Deleted in new
chr17	58567754	58567911	ENSG00000121101.15|TEX14|pc|chr17:58567754:58567911:-	0	-
#Deleted in new
chr17	58647991	58648112	ENSG00000121101.15|TEX14|pc|chr17:58647991:58648112:-	0	-
#Partially deleted in new
chr17	58693350	58694880	ENSG00000108384.14|RAD51C|pc|chr17:58693350:58694880:+	0	+
#Deleted in new
chr17	58699874	58700253	ENSG00000108384.14|RAD51C|pc|chr17:58699874:58700253:+	0	+
#Deleted in new
chr17	58705877	58705913	ENSG00000108384.14|RAD51C|pc|chr17:58705877:58705913:+	0	+
#Deleted in new
chr17	58705877	58706022	ENSG00000108384.14|RAD51C|pc|chr17:58705877:58706022:+	0	+
#Deleted in new
chr17	58706488	58706608	ENSG00000108384.14|RAD51C|pc|chr17:58706488:58706608:+	0	+
#Deleted in new
chr17	5888756	5888830	ENSG00000179314.13|WSCD1|pc|chr17:5888756:5888830:+	0	+
#Deleted in new
chr17	59073093	59073141	ENSG00000108395.13|TRIM37|pc|chr17:59073093:59073141:-	0	-
#Deleted in new
chr17	59090016	59090092	ENSG00000108395.13|TRIM37|pc|chr17:59090016:59090092:-	0	-
#Deleted in new
chr17	59090052	59090092	ENSG00000108395.13|TRIM37|pc|chr17:59090052:59090092:-	0	-
#Deleted in new
chr17	59117923	59118267	ENSG00000224738.1|AC099850.1|lncRNA|chr17:59117923:59118267:+	0	+
#Deleted in new
chr17	59124306	59124428	ENSG00000182628.12|SKA2|pc|chr17:59124306:59124428:-	0	-
#Deleted in new
chr17	59160758	59160876	ENSG00000068489.12|PRR11|pc|chr17:59160758:59160876:+	0	+
#Deleted in new
chr17	59163598	59163664	ENSG00000068489.12|PRR11|pc|chr17:59163598:59163664:+	0	+
#Deleted in new
chr17	59203460	59203834	ENSG00000068489.12|PRR11|pc|chr17:59203460:59203834:+	0	+
#Deleted in new
chr17	59203460	59203852	ENSG00000068489.12|PRR11|pc|chr17:59203460:59203852:+	0	+
#Split in new
chr17	59203645	59204705	ENSG00000068489.12|PRR11|pc|chr17:59203645:59204705:+	0	+
#Deleted in new
chr17	59203732	59203829	ENSG00000265415.1|AC099850.3|lncRNA|chr17:59203732:59203829:-	0	-
#Deleted in new
chr17	59209399	59209511	ENSG00000167447.12|SMG8|pc|chr17:59209399:59209511:+	0	+
#Partially deleted in new
chr17	5929779	5930696	ENSG00000179314.13|WSCD1|pc|chr17:5929779:5930696:+	0	+
#Deleted in new
chr1	75934433	75934486	ENSG00000225605.2|AC092813.1|lncRNA|chr1:75934433:75934486:+	0	+
#Deleted in new
chr17	59430868	59430920	ENSG00000265313.5|LINC01476|lncRNA|chr17:59430868:59430920:-	0	-
#Deleted in new
chr17	59502978	59503094	ENSG00000265313.5|LINC01476|lncRNA|chr17:59502978:59503094:-	0	-
#Deleted in new
chr17	59526479	59526839	ENSG00000265313.5|LINC01476|lncRNA|chr17:59526479:59526839:-	0	-
#Deleted in new
chr17	59526479	59526946	ENSG00000265313.5|LINC01476|lncRNA|chr17:59526479:59526946:-	0	-
#Deleted in new
chr17	59658661	59658804	ENSG00000141367.11|CLTC|pc|chr17:59658661:59658804:+	0	+
#Deleted in new
chr17	59670981	59671137	ENSG00000141367.11|CLTC|pc|chr17:59670981:59671137:+	0	+
#Partially deleted in new
chr17	59697311	59701425	ENSG00000141378.14|PTRH2|pc|chr17:59697311:59701425:-	0	-
#Deleted in new
chr17	59698870	59700189	ENSG00000141378.14|PTRH2|pc|chr17:59698870:59700189:-	0	-
#Deleted in new
chr17	59699415	59699876	ENSG00000141378.14|PTRH2|pc|chr17:59699415:59699876:-	0	-
#Deleted in new
chr17	59729714	59730017	ENSG00000062716.12|VMP1|pc|chr17:59729714:59730017:+	0	+
#Deleted in new
chr17	59834011	59834050	ENSG00000062716.12|VMP1|pc|chr17:59834011:59834050:+	0	+
#Deleted in new
chr1	75983444	75983560	ENSG00000225605.2|AC092813.1|lncRNA|chr1:75983444:75983560:+	0	+
#Deleted in new
chr17	59884660	59884756	ENSG00000108423.14|TUBD1|pc|chr17:59884660:59884756:-	0	-
#Deleted in new
chr17	59886504	59886622	ENSG00000108423.14|TUBD1|pc|chr17:59886504:59886622:-	0	-
#Deleted in new
chr17	59891813	59891960	ENSG00000108423.14|TUBD1|pc|chr17:59891813:59891960:-	0	-
#Partially deleted in new
chr17	5989929	5990021	ENSG00000179314.13|WSCD1|pc|chr17:5989929:5990021:+	0	+
#Deleted in new
chr17	59906987	59907404	ENSG00000108443.13|RPS6KB1|pc|chr17:59906987:59907404:+	0	+
#Deleted in new
chr17	59913745	59913805	ENSG00000108443.13|RPS6KB1|pc|chr17:59913745:59913805:+	0	+
#Partially deleted in new
chr17	59958623	59958701	ENSG00000189050.15|RNFT1|pc|chr17:59958623:59958701:-	0	-
#Deleted in new
chr17	59966402	59966467	ENSG00000267302.5|AC005702.1|lncRNA|chr17:59966402:59966467:+	0	+
#Deleted in new
chr17	59966402	59966467	ENSG00000267318.1|AC005702.2|pc|chr17:59966402:59966467:+	0	+
#Deleted in new
chr17	59972834	59973101	ENSG00000267318.1|AC005702.2|pc|chr17:59972834:59973101:+	0	+
#Deleted in new
chr17	59972834	59973104	ENSG00000267302.5|AC005702.1|lncRNA|chr17:59972834:59973104:+	0	+
#Deleted in new
chr17	59992887	59992979	ENSG00000267302.5|AC005702.1|lncRNA|chr17:59992887:59992979:+	0	+
#Deleted in new
chr17	60017426	60017499	ENSG00000267104.2|TBC1D3P1-DHX40P1|lncRNA|chr17:60017426:60017499:-	0	-
#Deleted in new
chr17	60018941	60018975	ENSG00000267104.2|TBC1D3P1-DHX40P1|lncRNA|chr17:60018941:60018975:-	0	-
#Deleted in new
chr1	76003025	76003177	ENSG00000225605.2|AC092813.1|lncRNA|chr1:76003025:76003177:+	0	+
#Deleted in new
chr17	60075704	60075833	ENSG00000068097.14|HEATR6|pc|chr17:60075704:60075833:-	0	-
#Partially deleted in new
chr17	60076272	60076701	ENSG00000068097.14|HEATR6|pc|chr17:60076272:60076701:-	0	-
#Deleted in new
chr17	60079308	60079472	ENSG00000267416.1|AC025048.4|lncRNA|chr17:60079308:60079472:+	0	+
#Deleted in new
chr17	60085931	60085985	ENSG00000261040.6|WFDC21P|lncRNA|chr17:60085931:60085985:-	0	-
#Deleted in new
chr17	60085931	60086079	ENSG00000261040.6|WFDC21P|lncRNA|chr17:60085931:60086079:-	0	-
#Deleted in new
chr17	60085931	60086126	ENSG00000261040.6|WFDC21P|lncRNA|chr17:60085931:60086126:-	0	-
#Deleted in new
chr1	76010739	76010853	ENSG00000225605.2|AC092813.1|lncRNA|chr1:76010739:76010853:+	0	+
#Deleted in new
chr1	76011296	76011398	ENSG00000225605.2|AC092813.1|lncRNA|chr1:76011296:76011398:+	0	+
#Deleted in new
chr17	60126534	60126865	ENSG00000267248.1|AC025048.2|lncRNA|chr17:60126534:60126865:-	0	-
#Deleted in new
chr17	60132435	60132512	ENSG00000267248.1|AC025048.2|lncRNA|chr17:60132435:60132512:-	0	-
#Deleted in new
chr17	60249057	60249753	ENSG00000170832.12|USP32|pc|chr17:60249057:60249753:-	0	-
#Deleted in new
chr17	60256630	60256700	ENSG00000170832.12|USP32|pc|chr17:60256630:60256700:-	0	-
#Deleted in new
chr17	60304906	60305043	ENSG00000170832.12|USP32|pc|chr17:60304906:60305043:-	0	-
#Deleted in new
chr17	60305142	60305228	ENSG00000170832.12|USP32|pc|chr17:60305142:60305228:-	0	-
#Deleted in new
chr1	76041690	76041898	ENSG00000230027.1|AC092813.2|lncRNA|chr1:76041690:76041898:+	0	+
#Deleted in new
chr17	60464787	60465161	ENSG00000062725.9|APPBP2|pc|chr17:60464787:60465161:-	0	-
#Deleted in new
chr17	60468438	60468510	ENSG00000062725.9|APPBP2|pc|chr17:60468438:60468510:-	0	-
#Deleted in new
chr17	60477468	60477506	ENSG00000062725.9|APPBP2|pc|chr17:60477468:60477506:-	0	-
#Deleted in new
chr17	60496412	60496441	ENSG00000062725.9|APPBP2|pc|chr17:60496412:60496441:-	0	-
#Partially deleted in new
chr17	60526292	60526501	ENSG00000259349.1|AC011921.1|lncRNA|chr17:60526292:60526501:+	0	+
#Partially deleted in new
chr17	60526298	60526501	ENSG00000259349.1|AC011921.1|lncRNA|chr17:60526298:60526501:+	0	+
#Deleted in new
chr17	60527016	60527087	ENSG00000259349.1|AC011921.1|lncRNA|chr17:60527016:60527087:+	0	+
#Deleted in new
chr17	60541819	60541907	ENSG00000259349.1|AC011921.1|lncRNA|chr17:60541819:60541907:+	0	+
#Deleted in new
chr17	60548407	60548566	ENSG00000259349.1|AC011921.1|lncRNA|chr17:60548407:60548566:+	0	+
#Deleted in new
chr17	60548407	60548695	ENSG00000259349.1|AC011921.1|lncRNA|chr17:60548407:60548695:+	0	+
#Partially deleted in new
chr17	60564546	60564627	ENSG00000267772.1|LINC01999|lncRNA|chr17:60564546:60564627:+	0	+
#Deleted in new
chr17	60577196	60577338	ENSG00000267772.1|LINC01999|lncRNA|chr17:60577196:60577338:+	0	+
#Deleted in new
chr17	60604593	60604748	ENSG00000170836.11|PPM1D|pc|chr17:60604593:60604748:+	0	+
#Deleted in new
chr17	60720159	60720356	ENSG00000141376.22|BCAS3|pc|chr17:60720159:60720356:+	0	+
#Partially deleted in new
chr17	6081881	6081970	ENSG00000179314.13|WSCD1|pc|chr17:6081881:6081970:+	0	+
#Deleted in new
chr17	60821710	60821775	ENSG00000141376.22|BCAS3|pc|chr17:60821710:60821775:+	0	+
#Deleted in new
chr17	60886382	60886483	ENSG00000141376.22|BCAS3|pc|chr17:60886382:60886483:+	0	+
#Deleted in new
chr17	60887049	60887126	ENSG00000141376.22|BCAS3|pc|chr17:60887049:60887126:+	0	+
#Deleted in new
chr17	60887049	60887211	ENSG00000141376.22|BCAS3|pc|chr17:60887049:60887211:+	0	+
#Deleted in new
chr17	60887238	60887311	ENSG00000141376.22|BCAS3|pc|chr17:60887238:60887311:+	0	+
#Deleted in new
chr17	60887278	60887447	ENSG00000141376.22|BCAS3|pc|chr17:60887278:60887447:+	0	+
#Deleted in new
chr17	60980557	60980605	ENSG00000141376.22|BCAS3|pc|chr17:60980557:60980605:+	0	+
#Deleted in new
chr17	60986856	60987142	ENSG00000141376.22|BCAS3|pc|chr17:60986856:60987142:+	0	+
#Deleted in new
chr17	61003799	61003889	ENSG00000141376.22|BCAS3|pc|chr17:61003799:61003889:+	0	+
#Deleted in new
chr17	61130703	61130891	ENSG00000267667.1|AC005856.1|lncRNA|chr17:61130703:61130891:-	0	-
#Deleted in new
chr17	61245215	61245371	ENSG00000141376.22|BCAS3|pc|chr17:61245215:61245371:+	0	+
#Deleted in new
chr17	61245259	61245371	ENSG00000141376.22|BCAS3|pc|chr17:61245259:61245371:+	0	+
#Deleted in new
chr17	61361667	61361857	ENSG00000267131.1|AC005746.2|lncRNA|chr17:61361667:61361857:-	0	-
#Partially deleted in new
chr17	61478350	61478429	ENSG00000121075.9|TBX4|pc|chr17:61478350:61478429:+	0	+
#Deleted in new
chr17	61478362	61478414	ENSG00000121075.9|TBX4|pc|chr17:61478362:61478414:+	0	+
#Deleted in new
chr17	61481811	61481909	ENSG00000121075.9|TBX4|pc|chr17:61481811:61481909:+	0	+
#Deleted in new
chr17	61775877	61776147	ENSG00000136492.8|BRIP1|pc|chr17:61775877:61776147:-	0	-
#Deleted in new
chr17	61783818	61783907	ENSG00000136492.8|BRIP1|pc|chr17:61783818:61783907:-	0	-
#Partially deleted in new
chr17	6189724	6189860	ENSG00000262231.1|AC104770.1|lncRNA|chr17:6189724:6189860:-	0	-
#Partially deleted in new
chr17	62003699	62007518	ENSG00000279133.1|AC018628.1|lncRNA|chr17:62003699:62007518:-	0	-
#Duplicated in new
chr17	62029276	62031489	ENSG00000108510.9|MED13|pc|chr17:62029276:62031489:-	0	-
#Partially deleted in new
chr17	62032348	62032473	ENSG00000108510.9|MED13|pc|chr17:62032348:62032473:-	0	-
#Deleted in new
chr17	62272486	62272510	ENSG00000270033.1|AC053481.5|pc|chr17:62272486:62272510:-	0	-
#Deleted in new
chr17	62273795	62273881	ENSG00000270033.1|AC053481.5|pc|chr17:62273795:62273881:-	0	-
#Deleted in new
chr17	62274043	62274116	ENSG00000270033.1|AC053481.5|pc|chr17:62274043:62274116:-	0	-
#Deleted in new
chr17	62357775	62358249	ENSG00000172421.8|EFCAB3|pc|chr17:62357775:62358249:+	0	+
#Partially deleted in new
chr17	62448574	62450093	ENSG00000087995.15|METTL2A|pc|chr17:62448574:62450093:+	0	+
#Partially deleted in new
chr17	62448574	62450822	ENSG00000087995.15|METTL2A|pc|chr17:62448574:62450822:+	0	+
#Deleted in new
chr17	62458657	62458765	ENSG00000146872.17|TLK2|pc|chr17:62458657:62458765:+	0	+
#Deleted in new
chr17	62507380	62507449	ENSG00000146872.17|TLK2|pc|chr17:62507380:62507449:+	0	+
#Deleted in new
chr17	62508407	62508511	ENSG00000146872.17|TLK2|pc|chr17:62508407:62508511:+	0	+
#Deleted in new
chr17	62508407	62508553	ENSG00000146872.17|TLK2|pc|chr17:62508407:62508553:+	0	+
#Deleted in new
chr17	62549725	62550913	ENSG00000264546.1|AC008026.3|lncRNA|chr17:62549725:62550913:+	0	+
#Deleted in new
chr17	62726027	62726151	ENSG00000265702.1|AC005821.1|lncRNA|chr17:62726027:62726151:+	0	+
#Deleted in new
chr17	62835012	62836371	ENSG00000265000.1|AC068512.1|lncRNA|chr17:62835012:62836371:+	0	+
#Deleted in new
chr17	62910689	62911425	ENSG00000283538.1|AC005972.4|lncRNA|chr17:62910689:62911425:-	0	-
#Deleted in new
chr17	62929518	62929697	ENSG00000283538.1|AC005972.4|lncRNA|chr17:62929518:62929697:-	0	-
#Deleted in new
chr17	62936773	62936865	ENSG00000283538.1|AC005972.4|lncRNA|chr17:62936773:62936865:-	0	-
#Deleted in new
chr17	63120688	63120806	ENSG00000264513.1|AC006270.1|lncRNA|chr17:63120688:63120806:-	0	-
#Deleted in new
chr17	63130863	63130947	ENSG00000264513.1|AC006270.1|lncRNA|chr17:63130863:63130947:-	0	-
#Deleted in new
chr17	63197621	63197785	ENSG00000233635.2|AC015923.1|lncRNA|chr17:63197621:63197785:-	0	-
#Deleted in new
chr17	632743	632841	ENSG00000141252.19|VPS53|pc|chr17:632743:632841:-	0	-
#Deleted in new
chr17	63305261	63305612	ENSG00000263501.1|AC005828.2|lncRNA|chr17:63305261:63305612:-	0	-
#Deleted in new
chr17	63313310	63313521	ENSG00000263501.1|AC005828.2|lncRNA|chr17:63313310:63313521:-	0	-
#Deleted in new
chr17	63320380	63320491	ENSG00000233635.2|AC015923.1|lncRNA|chr17:63320380:63320491:-	0	-
#Deleted in new
chr17	63334024	63334116	ENSG00000233635.2|AC015923.1|lncRNA|chr17:63334024:63334116:-	0	-
#Partially deleted in new
chr17	63391190	63391753	ENSG00000263644.1|AC005828.3|lncRNA|chr17:63391190:63391753:-	0	-
#Deleted in new
chr17	63430467	63430681	ENSG00000265282.1|AC005828.4|lncRNA|chr17:63430467:63430681:-	0	-
#Deleted in new
chr17	63431061	63431089	ENSG00000263644.1|AC005828.3|lncRNA|chr17:63431061:63431089:-	0	-
#Deleted in new
chr17	63454992	63455231	ENSG00000265971.1|AC005828.5|lncRNA|chr17:63454992:63455231:+	0	+
#Partially deleted in new
chr17	63510082	63510223	ENSG00000264813.6|AC113554.2|pc|chr17:63510082:63510223:+	0	+
#Deleted in new
chr17	63548801	63548977	ENSG00000173826.14|KCNH6|pc|chr17:63548801:63548977:+	0	+
#Deleted in new
chr17	63704878	63704908	ENSG00000266173.6|STRADA|pc|chr17:63704878:63704908:-	0	-
#Deleted in new
chr17	63712452	63712539	ENSG00000266173.6|STRADA|pc|chr17:63712452:63712539:-	0	-
#Deleted in new
chr17	63712452	63712545	ENSG00000266173.6|STRADA|pc|chr17:63712452:63712545:-	0	-
#Deleted in new
chr17	63717074	63717154	ENSG00000266173.6|STRADA|pc|chr17:63717074:63717154:-	0	-
#Deleted in new
chr17	63718785	63719122	ENSG00000266173.6|STRADA|pc|chr17:63718785:63719122:-	0	-
#Deleted in new
chr17	63718983	63719122	ENSG00000266173.6|STRADA|pc|chr17:63718983:63719122:-	0	-
#Deleted in new
chr17	63737395	63737436	ENSG00000266173.6|STRADA|pc|chr17:63737395:63737436:-	0	-
#Deleted in new
chr17	63775107	63775178	ENSG00000198231.12|DDX42|pc|chr17:63775107:63775178:+	0	+
#Partially deleted in new
chr17	63816967	63817345	ENSG00000198231.12|DDX42|pc|chr17:63816967:63817345:+	0	+
#Deleted in new
chr17	63996070	63997263	ENSG00000264954.1|PRR29-AS1|lncRNA|chr17:63996070:63997263:-	0	-
#Deleted in new
chr17	63996469	63997259	ENSG00000264954.1|PRR29-AS1|lncRNA|chr17:63996469:63997259:-	0	-
#Partially deleted in new
chr17	64005938	64006735	ENSG00000108622.10|ICAM2|pc|chr17:64005938:64006735:-	0	-
#Deleted in new
chr17	64006377	64006493	ENSG00000108622.10|ICAM2|pc|chr17:64006377:64006493:-	0	-
#Deleted in new
chr17	64098	65736	ENSG00000280279.1|AC240565.2|lncRNA|chr17:64098:65736:-	0	-
#Partially deleted in new
chr17	6423736	6425830	ENSG00000129221.15|AIPL1|pc|chr17:6423736:6425830:-	0	-
#Partially deleted in new
chr17	6423737	6425830	ENSG00000129221.15|AIPL1|pc|chr17:6423737:6425830:-	0	-
#Partially deleted in new
chr17	64239156	64239264	ENSG00000136478.7|TEX2|pc|chr17:64239156:64239264:-	0	-
#Deleted in new
chr17	64242260	64242377	ENSG00000136478.7|TEX2|pc|chr17:64242260:64242377:-	0	-
#Partially deleted in new
chr17	6424533	6425830	ENSG00000129221.15|AIPL1|pc|chr17:6424533:6425830:-	0	-
#Partially deleted in new
chr17	64319414	64323845	ENSG00000261371.5|PECAM1|pc|chr17:64319414:64323845:-	0	-
#Deleted in new
chr17	64370152	64370245	ENSG00000261371.5|PECAM1|pc|chr17:64370152:64370245:-	0	-
#Deleted in new
chr17	64370210	64370415	ENSG00000261371.5|PECAM1|pc|chr17:64370210:64370415:-	0	-
#Deleted in new
chr17	64378797	64378867	ENSG00000261371.5|PECAM1|pc|chr17:64378797:64378867:-	0	-
#Deleted in new
chr17	64378797	64378874	ENSG00000261371.5|PECAM1|pc|chr17:64378797:64378874:-	0	-
#Deleted in new
chr17	64378972	64379092	ENSG00000261371.5|PECAM1|pc|chr17:64378972:64379092:-	0	-
#Deleted in new
chr17	64449036	64449223	ENSG00000271605.5|MILR1|pc|chr17:64449036:64449223:+	0	+
#Deleted in new
chr17	64449114	64449223	ENSG00000271605.5|MILR1|pc|chr17:64449114:64449223:+	0	+
#Deleted in new
chr17	64449129	64449223	ENSG00000271605.5|MILR1|pc|chr17:64449129:64449223:+	0	+
#Deleted in new
chr17	64449168	64449223	ENSG00000271605.5|MILR1|pc|chr17:64449168:64449223:+	0	+
#Deleted in new
chr17	64457399	64457592	ENSG00000271605.5|MILR1|pc|chr17:64457399:64457592:+	0	+
#Deleted in new
chr17	64457399	64457684	ENSG00000271605.5|MILR1|pc|chr17:64457399:64457684:+	0	+
#Deleted in new
chr17	64468309	64468642	ENSG00000271605.5|MILR1|pc|chr17:64468309:64468642:+	0	+
#Deleted in new
chr17	64468309	64468643	ENSG00000271605.5|MILR1|pc|chr17:64468309:64468643:+	0	+
#Deleted in new
chr17	64481245	64481446	ENSG00000256525.6|POLG2|pc|chr17:64481245:64481446:-	0	-
#Deleted in new
chr17	64481323	64481446	ENSG00000256525.6|POLG2|pc|chr17:64481323:64481446:-	0	-
#Deleted in new
chr17	64483963	64484230	ENSG00000256525.6|POLG2|pc|chr17:64483963:64484230:-	0	-
#Partially deleted in new
chr17	64485157	64485868	ENSG00000256525.6|POLG2|pc|chr17:64485157:64485868:-	0	-
#Deleted in new
chr17	64486897	64487474	ENSG00000256525.6|POLG2|pc|chr17:64486897:64487474:-	0	-
#Deleted in new
chr17	64486988	64487068	ENSG00000256525.6|POLG2|pc|chr17:64486988:64487068:-	0	-
#Partially deleted in new
chr17	64505040	64505281	ENSG00000108654.13|DDX5|pc|chr17:64505040:64505281:-	0	-
#Deleted in new
chr17	64520485	64520576	ENSG00000258890.6|CEP95|pc|chr17:64520485:64520576:+	0	+
#Deleted in new
chr17	64560839	64560958	ENSG00000108854.15|SMURF2|pc|chr17:64560839:64560958:-	0	-
#Deleted in new
chr17	64764450	64764548	ENSG00000215769.8|ARHGAP27P1-BPTFP1-KPNA2P3|lncRNA|chr17:64764450:64764548:-	0	-
#Deleted in new
chr17	64854311	64854644	ENSG00000176809.10|LRRC37A3|pc|chr17:64854311:64854644:-	0	-
#Deleted in new
chr17	64854361	64854644	ENSG00000176809.10|LRRC37A3|pc|chr17:64854361:64854644:-	0	-
#Deleted in new
chr17	64854363	64854644	ENSG00000176809.10|LRRC37A3|pc|chr17:64854363:64854644:-	0	-
#Deleted in new
chr17	64854369	64854644	ENSG00000176809.10|LRRC37A3|pc|chr17:64854369:64854644:-	0	-
#Deleted in new
chr17	64854370	64854644	ENSG00000176809.10|LRRC37A3|pc|chr17:64854370:64854644:-	0	-
#Duplicated in new
chr17	64862899	64863585	ENSG00000176809.10|LRRC37A3|pc|chr17:64862899:64863585:-	0	-
#Deleted in new
chr17	64876935	64877030	ENSG00000176809.10|LRRC37A3|pc|chr17:64876935:64877030:-	0	-
#Deleted in new
chr17	64898361	64898459	ENSG00000176809.10|LRRC37A3|pc|chr17:64898361:64898459:-	0	-
#Deleted in new
chr17	64898361	64898608	ENSG00000176809.10|LRRC37A3|pc|chr17:64898361:64898608:-	0	-
#Deleted in new
chr17	64898361	64899101	ENSG00000176809.10|LRRC37A3|pc|chr17:64898361:64899101:-	0	-
#Deleted in new
chr17	64899765	64900178	ENSG00000266644.1|AC103810.5|lncRNA|chr17:64899765:64900178:+	0	+
#Deleted in new
chr17	64901069	64901281	ENSG00000265218.1|AC103810.2|lncRNA|chr17:64901069:64901281:+	0	+
#Deleted in new
chr17	64909594	64910180	ENSG00000265218.1|AC103810.2|lncRNA|chr17:64909594:64910180:+	0	+
#Deleted in new
chr17	64918749	64918785	ENSG00000176809.10|LRRC37A3|pc|chr17:64918749:64918785:-	0	-
#Deleted in new
chr17	64918749	64918870	ENSG00000176809.10|LRRC37A3|pc|chr17:64918749:64918870:-	0	-
#Deleted in new
chr17	64950894	64951054	ENSG00000265912.1|AC037487.1|lncRNA|chr17:64950894:64951054:+	0	+
#Partially deleted in new
chr17	65053061	65053308	ENSG00000266598.1|AC037487.2|lncRNA|chr17:65053061:65053308:+	0	+
#Deleted in new
chr17	65117054	65117210	ENSG00000108370.16|RGS9|pc|chr17:65117054:65117210:+	0	+
#Deleted in new
chr17	65119151	65119585	ENSG00000108370.16|RGS9|pc|chr17:65119151:65119585:+	0	+
#Deleted in new
chr17	65457540	65457714	ENSG00000263520.1|LINC02563|lncRNA|chr17:65457540:65457714:+	0	+
#Deleted in new
chr17	65829	65887	ENSG00000280279.1|AC240565.2|lncRNA|chr17:65829:65887:-	0	-
#Partially deleted in new
chr17	66181966	66182415	ENSG00000154240.16|CEP112|pc|chr17:66181966:66182415:-	0	-
#Deleted in new
chr17	66228606	66228637	ENSG00000091583.10|APOH|pc|chr17:66228606:66228637:-	0	-
#Deleted in new
chr17	66412684	66412762	ENSG00000264630.5|PRKCA-AS1|lncRNA|chr17:66412684:66412762:-	0	-
#Deleted in new
chr17	6653463	6654223	ENSG00000261996.1|AC004706.1|lncRNA|chr17:6653463:6654223:-	0	-
#Deleted in new
chr17	66554518	66554579	ENSG00000154229.11|PRKCA|pc|chr17:66554518:66554579:+	0	+
#Deleted in new
chr17	66676371	66676470	ENSG00000229330.2|AC006947.1|lncRNA|chr17:66676371:66676470:+	0	+
#Deleted in new
chr17	66677124	66677404	ENSG00000229330.2|AC006947.1|lncRNA|chr17:66677124:66677404:+	0	+
#Partially deleted in new
chr17	66696426	66696487	ENSG00000154229.11|PRKCA|pc|chr17:66696426:66696487:+	0	+
#Deleted in new
chr17	66703326	66703864	ENSG00000154229.11|PRKCA|pc|chr17:66703326:66703864:+	0	+
#Deleted in new
chr17	67019933	67020271	ENSG00000264491.1|AC005544.1|lncRNA|chr17:67019933:67020271:-	0	-
#Deleted in new
chr17	67176320	67176669	ENSG00000198265.11|HELZ|pc|chr17:67176320:67176669:-	0	-
#Deleted in new
chr17	67224302	67224427	ENSG00000264421.1|AC007448.2|lncRNA|chr17:67224302:67224427:+	0	+
#Deleted in new
chr17	67225286	67225541	ENSG00000264421.1|AC007448.2|lncRNA|chr17:67225286:67225541:+	0	+
#Partially deleted in new
chr17	67337915	67341052	ENSG00000197170.9|PSMD12|pc|chr17:67337915:67341052:-	0	-
#Deleted in new
chr17	67355340	67355422	ENSG00000197170.9|PSMD12|pc|chr17:67355340:67355422:-	0	-
#Deleted in new
chr17	67362775	67362892	ENSG00000197170.9|PSMD12|pc|chr17:67362775:67362892:-	0	-
#Deleted in new
chr17	67457537	67457823	ENSG00000154217.14|PITPNC1|pc|chr17:67457537:67457823:+	0	+
#Deleted in new
chr17	67459660	67459792	ENSG00000154217.14|PITPNC1|pc|chr17:67459660:67459792:+	0	+
#Deleted in new
chr17	67524480	67524742	ENSG00000264754.1|AC110921.1|lncRNA|chr17:67524480:67524742:+	0	+
#Deleted in new
chr17	6757396	6757431	ENSG00000132530.16|XAF1|pc|chr17:6757396:6757431:+	0	+
#Partially deleted in new
chr17	6758088	6758632	ENSG00000132530.16|XAF1|pc|chr17:6758088:6758632:+	0	+
#Partially deleted in new
chr1	76758279	76758404	ENSG00000237552.1|AC099060.1|lncRNA|chr1:76758279:76758404:-	0	-
#Deleted in new
chr17	6758469	6758716	ENSG00000132530.16|XAF1|pc|chr17:6758469:6758716:+	0	+
#Deleted in new
chr17	6758861	6758959	ENSG00000132530.16|XAF1|pc|chr17:6758861:6758959:+	0	+
#Deleted in new
chr17	67719110	67719167	ENSG00000130935.9|NOL11|pc|chr17:67719110:67719167:+	0	+
#Partially deleted in new
chr17	6772830	6776116	ENSG00000279296.1|PRAL|lncRNA|chr17:6772830:6776116:-	0	-
#Partially deleted in new
chr17	6773112	6773663	ENSG00000132530.16|XAF1|pc|chr17:6773112:6773663:+	0	+
#Partially deleted in new
chr17	6773112	6774108	ENSG00000132530.16|XAF1|pc|chr17:6773112:6774108:+	0	+
#Partially deleted in new
chr17	6773112	6775647	ENSG00000132530.16|XAF1|pc|chr17:6773112:6775647:+	0	+
#Partially deleted in new
chr17	6789132	6789330	ENSG00000167858.12|TEKT1|pc|chr17:6789132:6789330:-	0	-
#Deleted in new
chr17	6789700	6789760	ENSG00000177294.6|FBXO39|pc|chr17:6789700:6789760:+	0	+
#Deleted in new
chr17	67936608	67936681	ENSG00000171634.16|BPTF|pc|chr17:67936608:67936681:+	0	+
#Deleted in new
chr17	6794775	6794850	ENSG00000177294.6|FBXO39|pc|chr17:6794775:6794850:+	0	+
#Deleted in new
chr17	67950884	67951039	ENSG00000266717.1|AC134407.1|lncRNA|chr17:67950884:67951039:-	0	-
#Deleted in new
chr17	67951192	67951746	ENSG00000266717.1|AC134407.1|lncRNA|chr17:67951192:67951746:-	0	-
#Partially deleted in new
chr17	67955313	67957291	ENSG00000279573.1|AC134407.2|lncRNA|chr17:67955313:67957291:+	0	+
#Deleted in new
chr17	6795995	6796635	ENSG00000177294.6|FBXO39|pc|chr17:6795995:6796635:+	0	+
#Deleted in new
chr17	6795995	6797101	ENSG00000177294.6|FBXO39|pc|chr17:6795995:6797101:+	0	+
#Partially deleted in new
chr17	67965022	67966656	ENSG00000171634.16|BPTF|pc|chr17:67965022:67966656:+	0	+
#Partially deleted in new
chr17	67973933	67976072	ENSG00000279880.1|AC134407.3|lncRNA|chr17:67973933:67976072:+	0	+
#Deleted in new
chr17	68045467	68045585	ENSG00000182481.8|KPNA2|pc|chr17:68045467:68045585:+	0	+
#Deleted in new
chr17	68100551	68100708	ENSG00000265055.1|AC145343.1|lncRNA|chr17:68100551:68100708:-	0	-
#Deleted in new
chr17	68131461	68131907	ENSG00000274561.1|AC005332.6|lncRNA|chr17:68131461:68131907:+	0	+
#Partially deleted in new
chr17	68189883	68192802	ENSG00000267731.1|AC005332.5|lncRNA|chr17:68189883:68192802:+	0	+
#Split in new
chr17	68205488	68207493	ENSG00000274712.1|AC005332.7|lncRNA|chr17:68205488:68207493:+	0	+
#Partially deleted in new
chr17	68246628	68247938	ENSG00000265100.1|AC005332.1|lncRNA|chr17:68246628:68247938:-	0	-
#Deleted in new
chr17	68282996	68283123	ENSG00000108932.11|SLC16A6|pc|chr17:68282996:68283123:-	0	-
#Deleted in new
chr17	68285544	68285642	ENSG00000108932.11|SLC16A6|pc|chr17:68285544:68285642:-	0	-
#Deleted in new
chr17	68413622	68413795	ENSG00000267009.6|AC007780.1|lncRNA|chr17:68413622:68413795:+	0	+
#Deleted in new
chr17	68413641	68413795	ENSG00000267009.6|AC007780.1|lncRNA|chr17:68413641:68413795:+	0	+
#Deleted in new
chr17	68413729	68413795	ENSG00000267009.6|AC007780.1|lncRNA|chr17:68413729:68413795:+	0	+
#Deleted in new
chr17	68413739	68413795	ENSG00000267009.6|AC007780.1|lncRNA|chr17:68413739:68413795:+	0	+
#Deleted in new
chr17	68413910	68414182	ENSG00000267009.6|AC007780.1|lncRNA|chr17:68413910:68414182:+	0	+
#Deleted in new
chr17	68414026	68414182	ENSG00000267009.6|AC007780.1|lncRNA|chr17:68414026:68414182:+	0	+
#Partially deleted in new
chr17	68420947	68421236	ENSG00000070540.12|WIPI1|pc|chr17:68420947:68421236:-	0	-
#Deleted in new
chr17	68448304	68448440	ENSG00000070540.12|WIPI1|pc|chr17:68448304:68448440:-	0	-
#Deleted in new
chr17	68493638	68493670	ENSG00000267009.6|AC007780.1|lncRNA|chr17:68493638:68493670:+	0	+
#Deleted in new
chr17	685036	685195	ENSG00000141252.19|VPS53|pc|chr17:685036:685195:-	0	-
#Deleted in new
chr17	68557515	68557591	ENSG00000267461.1|AC079210.1|lncRNA|chr17:68557515:68557591:+	0	+
#Deleted in new
chr17	68558329	68558375	ENSG00000108950.11|FAM20A|pc|chr17:68558329:68558375:-	0	-
#Deleted in new
chr17	68558329	68558390	ENSG00000108950.11|FAM20A|pc|chr17:68558329:68558390:-	0	-
#Deleted in new
chr17	68575068	68575184	ENSG00000267461.1|AC079210.1|lncRNA|chr17:68575068:68575184:+	0	+
#Deleted in new
chr17	68590123	68590349	ENSG00000108950.11|FAM20A|pc|chr17:68590123:68590349:-	0	-
#Deleted in new
chr17	68591795	68591878	ENSG00000267659.5|LINC01482|lncRNA|chr17:68591795:68591878:+	0	+
#Deleted in new
chr17	68591838	68591878	ENSG00000267659.5|LINC01482|lncRNA|chr17:68591838:68591878:+	0	+
#Partially deleted in new
chr17	68598031	68598146	ENSG00000267659.5|LINC01482|lncRNA|chr17:68598031:68598146:+	0	+
#Deleted in new
chr17	68628102	68628186	ENSG00000267659.5|LINC01482|lncRNA|chr17:68628102:68628186:+	0	+
#Deleted in new
chr17	68628153	68628186	ENSG00000267659.5|LINC01482|lncRNA|chr17:68628153:68628186:+	0	+
#Deleted in new
chr17	68642669	68642765	ENSG00000267659.5|LINC01482|lncRNA|chr17:68642669:68642765:+	0	+
#Deleted in new
chr17	68658647	68658735	ENSG00000267659.5|LINC01482|lncRNA|chr17:68658647:68658735:+	0	+
#Deleted in new
chr17	68672112	68672166	ENSG00000267659.5|LINC01482|lncRNA|chr17:68672112:68672166:+	0	+
#Partially deleted in new
chr17	68750291	68750552	ENSG00000267659.5|LINC01482|lncRNA|chr17:68750291:68750552:+	0	+
#Deleted in new
chr17	68763489	68763882	ENSG00000267659.5|LINC01482|lncRNA|chr17:68763489:68763882:+	0	+
#Deleted in new
chr17	6876634	6876827	ENSG00000215067.9|ALOX12-AS1|lncRNA|chr17:6876634:6876827:-	0	-
#Deleted in new
chr17	6876710	6876887	ENSG00000215067.9|ALOX12-AS1|lncRNA|chr17:6876710:6876887:-	0	-
#Deleted in new
chr17	6876787	6876887	ENSG00000215067.9|ALOX12-AS1|lncRNA|chr17:6876787:6876887:-	0	-
#Deleted in new
chr17	68797460	68797822	ENSG00000267250.1|AC011591.1|lncRNA|chr17:68797460:68797822:-	0	-
#Deleted in new
chr17	6880909	6881062	ENSG00000215067.9|ALOX12-AS1|lncRNA|chr17:6880909:6881062:-	0	-
#Deleted in new
chr17	68944530	68944907	ENSG00000231749.3|ABCA9-AS1|lncRNA|chr17:68944530:68944907:+	0	+
#Deleted in new
chr17	68944716	68944874	ENSG00000141338.13|ABCA8|pc|chr17:68944716:68944874:-	0	-
#Deleted in new
chr17	68949311	68949472	ENSG00000141338.13|ABCA8|pc|chr17:68949311:68949472:-	0	-
#Deleted in new
chr17	69004713	69004793	ENSG00000231749.3|ABCA9-AS1|lncRNA|chr17:69004713:69004793:+	0	+
#Deleted in new
chr17	69012251	69012353	ENSG00000231749.3|ABCA9-AS1|lncRNA|chr17:69012251:69012353:+	0	+
#Deleted in new
chr17	69012345	69012353	ENSG00000231749.3|ABCA9-AS1|lncRNA|chr17:69012345:69012353:+	0	+
#Deleted in new
chr17	69018103	69018151	ENSG00000231749.3|ABCA9-AS1|lncRNA|chr17:69018103:69018151:+	0	+
#Deleted in new
chr17	69022349	69022467	ENSG00000231749.3|ABCA9-AS1|lncRNA|chr17:69022349:69022467:+	0	+
#Deleted in new
chr17	69022369	69022467	ENSG00000231749.3|ABCA9-AS1|lncRNA|chr17:69022369:69022467:+	0	+
#Partially deleted in new
chr17	69032600	69033873	ENSG00000154258.16|ABCA9|pc|chr17:69032600:69033873:-	0	-
#Deleted in new
chr17	69032620	69032743	ENSG00000231749.3|ABCA9-AS1|lncRNA|chr17:69032620:69032743:+	0	+
#Partially deleted in new
chr17	69115778	69115914	ENSG00000154262.12|ABCA6|pc|chr17:69115778:69115914:-	0	-
#Deleted in new
chr17	69147213	69147440	ENSG00000154263.17|ABCA10|pc|chr17:69147213:69147440:-	0	-
#Deleted in new
chr17	69147218	69147613	ENSG00000154263.17|ABCA10|pc|chr17:69147218:69147613:-	0	-
#Split in new
chr17	69148006	69148925	ENSG00000154263.17|ABCA10|pc|chr17:69148006:69148925:-	0	-
#Split in new
chr17	69148007	69148925	ENSG00000154263.17|ABCA10|pc|chr17:69148007:69148925:-	0	-
#Split in new
chr17	69148179	69148925	ENSG00000154263.17|ABCA10|pc|chr17:69148179:69148925:-	0	-
#Duplicated in new
chr17	69148591	69148925	ENSG00000154263.17|ABCA10|pc|chr17:69148591:69148925:-	0	-
#Duplicated in new
chr17	69148744	69148925	ENSG00000154263.17|ABCA10|pc|chr17:69148744:69148925:-	0	-
#Duplicated in new
chr17	69149032	69149323	ENSG00000154263.17|ABCA10|pc|chr17:69149032:69149323:-	0	-
#Partially deleted in new
chr17	69149987	69150452	ENSG00000154263.17|ABCA10|pc|chr17:69149987:69150452:-	0	-
#Deleted in new
chr17	69164073	69164154	ENSG00000154263.17|ABCA10|pc|chr17:69164073:69164154:-	0	-
#Deleted in new
chr17	69164963	69165083	ENSG00000154263.17|ABCA10|pc|chr17:69164963:69165083:-	0	-
#Deleted in new
chr17	69175618	69175781	ENSG00000154263.17|ABCA10|pc|chr17:69175618:69175781:-	0	-
#Deleted in new
chr17	69178919	69179008	ENSG00000154263.17|ABCA10|pc|chr17:69178919:69179008:-	0	-
#Deleted in new
chr17	69196245	69196483	ENSG00000154263.17|ABCA10|pc|chr17:69196245:69196483:-	0	-
#Deleted in new
chr17	69196285	69196483	ENSG00000154263.17|ABCA10|pc|chr17:69196285:69196483:-	0	-
#Deleted in new
chr17	69215449	69215541	ENSG00000154263.17|ABCA10|pc|chr17:69215449:69215541:-	0	-
#Deleted in new
chr17	69223627	69223709	ENSG00000154263.17|ABCA10|pc|chr17:69223627:69223709:-	0	-
#Deleted in new
chr17	69228580	69228655	ENSG00000154263.17|ABCA10|pc|chr17:69228580:69228655:-	0	-
#Deleted in new
chr17	69228580	69228677	ENSG00000154263.17|ABCA10|pc|chr17:69228580:69228677:-	0	-
#Deleted in new
chr17	69228580	69228700	ENSG00000154263.17|ABCA10|pc|chr17:69228580:69228700:-	0	-
#Deleted in new
chr17	69228580	69228860	ENSG00000154263.17|ABCA10|pc|chr17:69228580:69228860:-	0	-
#Partially deleted in new
chr17	69232962	69235012	ENSG00000278873.1|PRO1804|lncRNA|chr17:69232962:69235012:-	0	-
#Deleted in new
chr17	6926160	6926283	ENSG00000215067.9|ALOX12-AS1|lncRNA|chr17:6926160:6926283:-	0	-
#Deleted in new
chr17	69285387	69285420	ENSG00000154265.15|ABCA5|pc|chr17:69285387:69285420:-	0	-
#Deleted in new
chr17	69316899	69317232	ENSG00000154265.15|ABCA5|pc|chr17:69316899:69317232:-	0	-
#Deleted in new
chr17	69317704	69317823	ENSG00000154265.15|ABCA5|pc|chr17:69317704:69317823:-	0	-
#Partially deleted in new
chr17	69325698	69325817	ENSG00000154265.15|ABCA5|pc|chr17:69325698:69325817:-	0	-
#Partially deleted in new
chr17	69504458	69504579	ENSG00000108984.13|MAP2K6|pc|chr17:69504458:69504579:+	0	+
#Partially deleted in new
chr17	69521048	69521833	ENSG00000108984.13|MAP2K6|pc|chr17:69521048:69521833:+	0	+
#Deleted in new
chr17	6958864	6958961	ENSG00000263316.1|AC027763.2|lncRNA|chr17:6958864:6958961:-	0	-
#Deleted in new
chr17	69624669	69624734	ENSG00000227517.6|LINC01483|lncRNA|chr17:69624669:69624734:+	0	+
#Deleted in new
chr17	69624669	69624752	ENSG00000227517.6|LINC01483|lncRNA|chr17:69624669:69624752:+	0	+
#Deleted in new
chr17	69625505	69628351	ENSG00000227517.6|LINC01483|lncRNA|chr17:69625505:69628351:+	0	+
#Deleted in new
chr1	7698302	7698872	ENSG00000270035.1|AL359881.2|lncRNA|chr1:7698302:7698872:-	0	-
#Deleted in new
chr17	69845439	69845486	ENSG00000227517.6|LINC01483|lncRNA|chr17:69845439:69845486:+	0	+
#Deleted in new
chr17	69846313	69846545	ENSG00000227517.6|LINC01483|lncRNA|chr17:69846313:69846545:+	0	+
#Deleted in new
chr17	6985108	6985540	ENSG00000215067.9|ALOX12-AS1|lncRNA|chr17:6985108:6985540:-	0	-
#Deleted in new
chr17	6985493	6985540	ENSG00000267047.1|AC040977.2|lncRNA|chr17:6985493:6985540:-	0	-
#Deleted in new
chr17	69983384	69983473	ENSG00000237560.5|LINC01497|lncRNA|chr17:69983384:69983473:+	0	+
#Deleted in new
chr17	69983384	69983538	ENSG00000237560.5|LINC01497|lncRNA|chr17:69983384:69983538:+	0	+
#Deleted in new
chr17	70018110	70018207	ENSG00000230258.6|AC005208.1|lncRNA|chr17:70018110:70018207:-	0	-
#Deleted in new
chr17	70018530	70018591	ENSG00000230258.6|AC005208.1|lncRNA|chr17:70018530:70018591:-	0	-
#Partially deleted in new
chr17	7002279	7002620	ENSG00000215067.9|ALOX12-AS1|lncRNA|chr17:7002279:7002620:-	0	-
#Deleted in new
chr17	7002483	7002620	ENSG00000215067.9|ALOX12-AS1|lncRNA|chr17:7002483:7002620:-	0	-
#Deleted in new
chr17	70053298	70053480	ENSG00000230258.6|AC005208.1|lncRNA|chr17:70053298:70053480:-	0	-
#Deleted in new
chr17	70053428	70053620	ENSG00000153822.13|KCNJ16|pc|chr17:70053428:70053620:+	0	+
#Deleted in new
chr17	70053640	70053719	ENSG00000230258.6|AC005208.1|lncRNA|chr17:70053640:70053719:-	0	-
#Deleted in new
chr17	70062210	70062328	ENSG00000267603.1|LINC01028|lncRNA|chr17:70062210:70062328:+	0	+
#Deleted in new
chr17	70100657	70100766	ENSG00000153822.13|KCNJ16|pc|chr17:70100657:70100766:+	0	+
#Partially deleted in new
chr17	70100657	70102210	ENSG00000153822.13|KCNJ16|pc|chr17:70100657:70102210:+	0	+
#Deleted in new
chr17	70108300	70108381	ENSG00000153822.13|KCNJ16|pc|chr17:70108300:70108381:+	0	+
#Deleted in new
chr17	70128642	70128859	ENSG00000230258.6|AC005208.1|lncRNA|chr17:70128642:70128859:-	0	-
#Partially deleted in new
chr17	70312830	70313388	ENSG00000267109.1|AC011990.1|lncRNA|chr17:70312830:70313388:-	0	-
#Deleted in new
chr17	70368815	70368916	ENSG00000267109.1|AC011990.1|lncRNA|chr17:70368815:70368916:-	0	-
#Deleted in new
chr17	705624	706095	ENSG00000141252.19|VPS53|pc|chr17:705624:706095:-	0	-
#Partially deleted in new
chr17	7074536	7075222	ENSG00000132514.13|CLEC10A|pc|chr17:7074536:7075222:-	0	-
#Partially deleted in new
chr17	7074565	7075222	ENSG00000132514.13|CLEC10A|pc|chr17:7074565:7075222:-	0	-
#Partially deleted in new
chr17	7107501	7107907	ENSG00000161944.16|ASGR2|pc|chr17:7107501:7107907:-	0	-
#Deleted in new
chr17	71132389	71132470	ENSG00000260785.1|CASC17|lncRNA|chr17:71132389:71132470:-	0	-
#Deleted in new
chr17	7115640	7115700	ENSG00000161944.16|ASGR2|pc|chr17:7115640:7115700:-	0	-
#Deleted in new
chr17	71365	71556	ENSG00000280279.1|AC240565.2|lncRNA|chr17:71365:71556:-	0	-
#Partially deleted in new
chr17	71829869	71830240	ENSG00000283517.1|AC005144.1|lncRNA|chr17:71829869:71830240:-	0	-
#Deleted in new
chr17	71858620	71858688	ENSG00000283517.1|AC005144.1|lncRNA|chr17:71858620:71858688:-	0	-
#Deleted in new
chr17	72021850	72021979	ENSG00000228639.6|LINC02095|lncRNA|chr17:72021850:72021979:-	0	-
#Deleted in new
chr17	72025897	72025962	ENSG00000228639.6|LINC02095|lncRNA|chr17:72025897:72025962:-	0	-
#Deleted in new
chr17	72037044	72037131	ENSG00000256124.5|LINC01152|lncRNA|chr17:72037044:72037131:+	0	+
#Deleted in new
chr17	72037289	72037363	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72037289:72037363:-	0	-
#Deleted in new
chr17	72037313	72037363	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72037313:72037363:-	0	-
#Deleted in new
chr17	72045427	72045524	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72045427:72045524:-	0	-
#Partially deleted in new
chr17	72077212	72077309	ENSG00000226101.1|LINC02097|lncRNA|chr17:72077212:72077309:+	0	+
#Deleted in new
chr17	72081920	72082041	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72081920:72082041:-	0	-
#Deleted in new
chr17	72081949	72082134	ENSG00000226101.1|LINC02097|lncRNA|chr17:72081949:72082134:+	0	+
#Deleted in new
chr17	72082121	72082415	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72082121:72082415:-	0	-
#Deleted in new
chr17	72084989	72085045	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72084989:72085045:-	0	-
#Deleted in new
chr17	72084989	72085501	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72084989:72085501:-	0	-
#Deleted in new
chr17	72086492	72086545	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72086492:72086545:-	0	-
#Partially deleted in new
chr17	72090458	72091104	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72090458:72091104:-	0	-
#Deleted in new
chr17	72090754	72091104	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72090754:72091104:-	0	-
#Deleted in new
chr17	72090820	72091104	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72090820:72091104:-	0	-
#Partially deleted in new
chr17	72092929	72093481	ENSG00000226101.1|LINC02097|lncRNA|chr17:72092929:72093481:+	0	+
#Deleted in new
chr17	72141385	72141781	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72141385:72141781:-	0	-
#Deleted in new
chr17	72141684	72141780	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72141684:72141780:-	0	-
#Partially deleted in new
chr17	721590	721717	ENSG00000141252.19|VPS53|pc|chr17:721590:721717:-	0	-
#Partially deleted in new
chr17	72220645	72221873	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72220645:72221873:-	0	-
#Deleted in new
chr17	72221623	72221836	ENSG00000234899.9|SOX9-AS1|lncRNA|chr17:72221623:72221836:-	0	-
#Deleted in new
chr17	72323122	72323320	ENSG00000227036.6|LINC00511|lncRNA|chr17:72323122:72323320:-	0	-
#Deleted in new
chr17	72323144	72323320	ENSG00000227036.6|LINC00511|lncRNA|chr17:72323144:72323320:-	0	-
#Deleted in new
chr17	72323157	72323320	ENSG00000227036.6|LINC00511|lncRNA|chr17:72323157:72323320:-	0	-
#Deleted in new
chr17	72324062	72324150	ENSG00000227036.6|LINC00511|lncRNA|chr17:72324062:72324150:-	0	-
#Deleted in new
chr17	72354904	72355136	ENSG00000264026.1|LINC02003|lncRNA|chr17:72354904:72355136:+	0	+
#Deleted in new
chr17	72384301	72385137	ENSG00000227036.6|LINC00511|lncRNA|chr17:72384301:72385137:-	0	-
#Deleted in new
chr17	72385044	72385123	ENSG00000227036.6|LINC00511|lncRNA|chr17:72385044:72385123:-	0	-
#Deleted in new
chr17	72401303	72401421	ENSG00000227036.6|LINC00511|lncRNA|chr17:72401303:72401421:-	0	-
#Deleted in new
chr17	72431127	72431159	ENSG00000227036.6|LINC00511|lncRNA|chr17:72431127:72431159:-	0	-
#Deleted in new
chr17	72431127	72431191	ENSG00000227036.6|LINC00511|lncRNA|chr17:72431127:72431191:-	0	-
#Deleted in new
chr17	72431127	72431224	ENSG00000227036.6|LINC00511|lncRNA|chr17:72431127:72431224:-	0	-
#Deleted in new
chr17	72431163	72431224	ENSG00000227036.6|LINC00511|lncRNA|chr17:72431163:72431224:-	0	-
#Deleted in new
chr17	72470058	72470366	ENSG00000227036.6|LINC00511|lncRNA|chr17:72470058:72470366:-	0	-
#Deleted in new
chr17	72638746	72638850	ENSG00000227036.6|LINC00511|lncRNA|chr17:72638746:72638850:-	0	-
#Deleted in new
chr17	7263928	7263983	ENSG00000181885.18|CLDN7|pc|chr17:7263928:7263983:-	0	-
#Deleted in new
chr17	72642730	72642829	ENSG00000263893.2|AC080037.1|lncRNA|chr17:72642730:72642829:+	0	+
#Deleted in new
chr17	72643700	72644490	ENSG00000263893.2|AC080037.1|lncRNA|chr17:72643700:72644490:+	0	+
#Deleted in new
chr17	72817869	72817935	ENSG00000133195.11|SLC39A11|pc|chr17:72817869:72817935:-	0	-
#Deleted in new
chr17	72821604	72822022	ENSG00000133195.11|SLC39A11|pc|chr17:72821604:72822022:-	0	-
#Deleted in new
chr17	72837799	72838120	ENSG00000133195.11|SLC39A11|pc|chr17:72837799:72838120:-	0	-
#Deleted in new
chr17	72992890	72992932	ENSG00000133195.11|SLC39A11|pc|chr17:72992890:72992932:-	0	-
#Deleted in new
chr17	72992890	72992933	ENSG00000133195.11|SLC39A11|pc|chr17:72992890:72992933:-	0	-
#Deleted in new
chr17	72992890	72992949	ENSG00000133195.11|SLC39A11|pc|chr17:72992890:72992949:-	0	-
#Deleted in new
chr17	73073666	73073835	ENSG00000133195.11|SLC39A11|pc|chr17:73073666:73073835:-	0	-
#Deleted in new
chr1	77313794	77315060	ENSG00000154027.18|AK5|pc|chr1:77313794:77315060:+	0	+
#Deleted in new
chr17	73192631	73192831	ENSG00000166685.11|COG1|pc|chr17:73192631:73192831:+	0	+
#Partially deleted in new
chr17	73227635	73227700	ENSG00000133193.12|FAM104A|pc|chr17:73227635:73227700:-	0	-
#Deleted in new
chr17	73227721	73227748	ENSG00000133193.12|FAM104A|pc|chr17:73227721:73227748:-	0	-
#Deleted in new
chr17	73243092	73243199	ENSG00000265010.1|AC087301.1|lncRNA|chr17:73243092:73243199:+	0	+
#Deleted in new
chr17	73244492	73244706	ENSG00000265010.1|AC087301.1|lncRNA|chr17:73244492:73244706:+	0	+
#Deleted in new
chr17	73247240	73247455	ENSG00000141219.15|C17orf80|pc|chr17:73247240:73247455:+	0	+
#Deleted in new
chr17	73247240	73247527	ENSG00000141219.15|C17orf80|pc|chr17:73247240:73247527:+	0	+
#Deleted in new
chr17	73247240	73247530	ENSG00000141219.15|C17orf80|pc|chr17:73247240:73247530:+	0	+
#Deleted in new
chr17	73247240	73248874	ENSG00000141219.15|C17orf80|pc|chr17:73247240:73248874:+	0	+
#Deleted in new
chr17	73247240	73248947	ENSG00000141219.15|C17orf80|pc|chr17:73247240:73248947:+	0	+
#Deleted in new
chr17	73248448	73248536	ENSG00000187959.9|CPSF4L|pc|chr17:73248448:73248536:-	0	-
#Deleted in new
chr17	73369160	73369213	ENSG00000069188.16|SDK2|pc|chr17:73369160:73369213:-	0	-
#Partially deleted in new
chr17	7342415	7342753	ENSG00000072818.11|ACAP1|pc|chr17:7342415:7342753:+	0	+
#Partially deleted in new
chr1	77346045	77346266	ENSG00000233099.1|AC095030.1|lncRNA|chr1:77346045:77346266:-	0	-
#Partially deleted in new
chr1	77349429	77349585	ENSG00000233099.1|AC095030.1|lncRNA|chr1:77349429:77349585:-	0	-
#Partially deleted in new
chr17	73504339	73504461	ENSG00000069188.16|SDK2|pc|chr17:73504339:73504461:-	0	-
#Deleted in new
chr17	73663824	73663848	ENSG00000265935.1|AC032019.2|lncRNA|chr17:73663824:73663848:-	0	-
#Partially deleted in new
chr1	77371377	77371467	ENSG00000154027.18|AK5|pc|chr1:77371377:77371467:+	0	+
#Deleted in new
chr17	73755673	73755920	ENSG00000263574.1|AC125421.1|lncRNA|chr17:73755673:73755920:+	0	+
#Deleted in new
chr17	73790051	73790174	ENSG00000234721.2|LINC02092|lncRNA|chr17:73790051:73790174:+	0	+
#Deleted in new
chr17	73794324	73794647	ENSG00000234721.2|LINC02092|lncRNA|chr17:73794324:73794647:+	0	+
#Partially deleted in new
chr17	73799229	73799668	ENSG00000234721.2|LINC02092|lncRNA|chr17:73799229:73799668:+	0	+
#Deleted in new
chr17	73823687	73823825	ENSG00000177338.13|LINC00469|lncRNA|chr17:73823687:73823825:-	0	-
#Deleted in new
chr17	73828447	73828520	ENSG00000177338.13|LINC00469|lncRNA|chr17:73828447:73828520:-	0	-
#Deleted in new
chr17	73894748	73895042	ENSG00000266765.1|AC137735.1|lncRNA|chr17:73894748:73895042:-	0	-
#Deleted in new
chr17	74043451	74043509	ENSG00000266357.5|LINC02074|lncRNA|chr17:74043451:74043509:-	0	-
#Deleted in new
chr17	74064356	74064414	ENSG00000266357.5|LINC02074|lncRNA|chr17:74064356:74064414:-	0	-
#Deleted in new
chr17	74106879	74106981	ENSG00000266357.5|LINC02074|lncRNA|chr17:74106879:74106981:-	0	-
#Deleted in new
chr17	74112645	74112899	ENSG00000266357.5|LINC02074|lncRNA|chr17:74112645:74112899:-	0	-
#Partially deleted in new
chr17	74203917	74206283	ENSG00000172809.12|RPL38|pc|chr17:74203917:74206283:+	0	+
#Partially deleted in new
chr17	74204129	74204593	ENSG00000172809.12|RPL38|pc|chr17:74204129:74204593:+	0	+
#Split in new
chr17	74209803	74210655	ENSG00000172809.12|RPL38|pc|chr17:74209803:74210655:+	0	+
#Split in new
chr17	74209979	74211682	ENSG00000246731.2|MGC16275|lncRNA|chr17:74209979:74211682:-	0	-
#Deleted in new
chr17	74211485	74211682	ENSG00000246731.2|MGC16275|lncRNA|chr17:74211485:74211682:-	0	-
#Deleted in new
chr17	74212523	74213321	ENSG00000246731.2|MGC16275|lncRNA|chr17:74212523:74213321:-	0	-
#Deleted in new
chr17	74212673	74213113	ENSG00000246731.2|MGC16275|lncRNA|chr17:74212673:74213113:-	0	-
#Deleted in new
chr17	74212951	74213342	ENSG00000246731.2|MGC16275|lncRNA|chr17:74212951:74213342:-	0	-
#Deleted in new
chr17	74213212	74213308	ENSG00000246731.2|MGC16275|lncRNA|chr17:74213212:74213308:-	0	-
#Deleted in new
chr17	74307209	74307338	ENSG00000266106.1|AC103809.1|lncRNA|chr17:74307209:74307338:-	0	-
#Partially deleted in new
chr17	74443076	74443134	ENSG00000170412.16|GPRC5C|pc|chr17:74443076:74443134:+	0	+
#Deleted in new
chr17	7446397	7446472	ENSG00000170175.10|CHRNB1|pc|chr17:7446397:7446472:+	0	+
#Deleted in new
chr17	74469945	74470242	ENSG00000167851.13|CD300A|pc|chr17:74469945:74470242:+	0	+
#Partially deleted in new
chr17	74474531	74474685	ENSG00000167851.13|CD300A|pc|chr17:74474531:74474685:+	0	+
#Partially deleted in new
chr17	74521173	74522900	ENSG00000178789.8|CD300LB|pc|chr17:74521173:74522900:-	0	-
#Partially deleted in new
chr17	74579364	74580113	ENSG00000204345.1|CD300LD|pc|chr17:74579364:74580113:-	0	-
#Deleted in new
chr17	74584678	74584914	ENSG00000182352.8|C17orf77|lncRNA|chr17:74584678:74584914:+	0	+
#Deleted in new
chr17	74584917	74584989	ENSG00000182352.8|C17orf77|lncRNA|chr17:74584917:74584989:+	0	+
#Deleted in new
chr17	74590501	74590745	ENSG00000182352.8|C17orf77|lncRNA|chr17:74590501:74590745:+	0	+
#Deleted in new
chr17	74590518	74590745	ENSG00000182352.8|C17orf77|lncRNA|chr17:74590518:74590745:+	0	+
#Partially deleted in new
chr17	74591983	74594209	ENSG00000182352.8|C17orf77|lncRNA|chr17:74591983:74594209:+	0	+
#Split in new
chr17	74603736	74607229	ENSG00000261222.2|AC064805.1|lncRNA|chr17:74603736:74607229:+	0	+
#Deleted in new
chr17	74606785	74607191	ENSG00000261222.2|AC064805.1|lncRNA|chr17:74606785:74607191:+	0	+
#Partially deleted in new
chr17	74609886	74612773	ENSG00000186407.6|CD300E|pc|chr17:74609886:74612773:-	0	-
#Deleted in new
chr17	74619096	74619347	ENSG00000186407.6|CD300E|pc|chr17:74619096:74619347:-	0	-
#Partially deleted in new
chr17	74772441	74772576	ENSG00000109065.11|NAT9|pc|chr17:74772441:74772576:-	0	-
#Deleted in new
chr17	74772482	74772576	ENSG00000109065.11|NAT9|pc|chr17:74772482:74772576:-	0	-
#Partially deleted in new
chr17	74775359	74775707	ENSG00000109065.11|NAT9|pc|chr17:74775359:74775707:-	0	-
#Partially deleted in new
chr17	74777577	74777738	ENSG00000109066.13|TMEM104|pc|chr17:74777577:74777738:+	0	+
#Deleted in new
chr17	74869949	74870102	ENSG00000161513.11|FDXR|pc|chr17:74869949:74870102:-	0	-
#Partially deleted in new
chr17	74893580	74893607	ENSG00000172782.11|FADS6|pc|chr17:74893580:74893607:-	0	-
#Deleted in new
chr17	74967805	74967933	ENSG00000167861.15|HID1|pc|chr17:74967805:74967933:-	0	-
#Deleted in new
chr17	74974567	74974730	ENSG00000263586.1|HID1-AS1|lncRNA|chr17:74974567:74974730:+	0	+
#Deleted in new
chr17	74975165	74975728	ENSG00000263586.1|HID1-AS1|lncRNA|chr17:74975165:74975728:+	0	+
#Deleted in new
chr17	75018585	75018694	ENSG00000167862.9|MRPL58|pc|chr17:75018585:75018694:+	0	+
#Deleted in new
chr17	75032574	75032653	ENSG00000180901.10|KCTD2|pc|chr17:75032574:75032653:+	0	+
#Deleted in new
chr17	75032579	75032724	ENSG00000180901.10|KCTD2|pc|chr17:75032579:75032724:+	0	+
#Deleted in new
chr17	75032599	75033099	ENSG00000180901.10|KCTD2|pc|chr17:75032599:75033099:+	0	+
#Deleted in new
chr17	75032609	75032724	ENSG00000180901.10|KCTD2|pc|chr17:75032609:75032724:+	0	+
#Deleted in new
chr17	75032611	75032724	ENSG00000180901.10|KCTD2|pc|chr17:75032611:75032724:+	0	+
#Deleted in new
chr17	75032930	75033099	ENSG00000180901.10|KCTD2|pc|chr17:75032930:75033099:+	0	+
#Deleted in new
chr17	75035231	75035357	ENSG00000180901.10|KCTD2|pc|chr17:75035231:75035357:+	0	+
#Deleted in new
chr17	7508470	7508475	ENSG00000181222.15|POLR2A|pc|chr17:7508470:7508475:+	0	+
#Deleted in new
chr17	75090161	75090332	ENSG00000170190.15|SLC16A5|pc|chr17:75090161:75090332:+	0	+
#Partially deleted in new
chr17	7509531	7509927	ENSG00000181222.15|POLR2A|pc|chr17:7509531:7509927:+	0	+
#Deleted in new
chr17	75138415	75138528	ENSG00000265800.1|AC022211.3|lncRNA|chr17:75138415:75138528:-	0	-
#Deleted in new
chr17	75141063	75141350	ENSG00000265800.1|AC022211.3|lncRNA|chr17:75141063:75141350:-	0	-
#Deleted in new
chr17	75145260	75145882	ENSG00000263786.1|AC022211.1|lncRNA|chr17:75145260:75145882:-	0	-
#Partially deleted in new
chr17	75147783	75147978	ENSG00000189159.15|JPT1|pc|chr17:75147783:75147978:-	0	-
#Deleted in new
chr17	75149090	75149185	ENSG00000189159.15|JPT1|pc|chr17:75149090:75149185:-	0	-
#Split in new
chr17	75165585	75168401	ENSG00000188612.11|SUMO2|pc|chr17:75165585:75168401:-	0	-
#Deleted in new
chr17	75208154	75208425	ENSG00000125450.10|NUP85|pc|chr17:75208154:75208425:+	0	+
#Deleted in new
chr17	75216289	75216344	ENSG00000125450.10|NUP85|pc|chr17:75216289:75216344:+	0	+
#Deleted in new
chr17	75216310	75216365	ENSG00000125450.10|NUP85|pc|chr17:75216310:75216365:+	0	+
#Deleted in new
chr17	75226744	75226978	ENSG00000125450.10|NUP85|pc|chr17:75226744:75226978:+	0	+
#Deleted in new
chr17	75227947	75228384	ENSG00000125450.10|NUP85|pc|chr17:75227947:75228384:+	0	+
#Deleted in new
chr17	75228160	75229131	ENSG00000125450.10|NUP85|pc|chr17:75228160:75229131:+	0	+
#Deleted in new
chr17	75228997	75229126	ENSG00000125450.10|NUP85|pc|chr17:75228997:75229126:+	0	+
#Deleted in new
chr17	75228997	75229131	ENSG00000125450.10|NUP85|pc|chr17:75228997:75229131:+	0	+
#Deleted in new
chr17	75235421	75235480	ENSG00000125450.10|NUP85|pc|chr17:75235421:75235480:+	0	+
#Deleted in new
chr17	75248839	75249008	ENSG00000125447.16|GGA3|pc|chr17:75248839:75249008:-	0	-
#Partially deleted in new
chr17	75263339	75264490	ENSG00000125445.10|MRPS7|pc|chr17:75263339:75264490:+	0	+
#Duplicated in new
chr17	75265701	75266084	ENSG00000125445.10|MRPS7|pc|chr17:75265701:75266084:+	0	+
#Duplicated in new
chr17	75265701	75266330	ENSG00000125445.10|MRPS7|pc|chr17:75265701:75266330:+	0	+
#Duplicated in new
chr17	75265701	75266373	ENSG00000125445.10|MRPS7|pc|chr17:75265701:75266373:+	0	+
#Deleted in new
chr17	75270942	75271133	ENSG00000125457.13|MIF4GD|pc|chr17:75270942:75271133:-	0	-
#Deleted in new
chr17	75270942	75271155	ENSG00000125457.13|MIF4GD|pc|chr17:75270942:75271155:-	0	-
#Deleted in new
chr17	75271143	75271170	ENSG00000125457.13|MIF4GD|pc|chr17:75271143:75271170:-	0	-
#Deleted in new
chr17	75271143	75271173	ENSG00000125457.13|MIF4GD|pc|chr17:75271143:75271173:-	0	-
#Partially deleted in new
chr17	75271143	75271200	ENSG00000125457.13|MIF4GD|pc|chr17:75271143:75271200:-	0	-
#Deleted in new
chr17	75288119	75288591	ENSG00000125454.11|SLC25A19|pc|chr17:75288119:75288591:-	0	-
#Deleted in new
chr17	75288387	75288461	ENSG00000125454.11|SLC25A19|pc|chr17:75288387:75288461:-	0	-
#Deleted in new
chr17	75288387	75288591	ENSG00000125454.11|SLC25A19|pc|chr17:75288387:75288591:-	0	-
#Deleted in new
chr17	75288497	75288591	ENSG00000125454.11|SLC25A19|pc|chr17:75288497:75288591:-	0	-
#Deleted in new
chr17	75288501	75288591	ENSG00000125454.11|SLC25A19|pc|chr17:75288501:75288591:-	0	-
#Deleted in new
chr17	75288553	75288591	ENSG00000125454.11|SLC25A19|pc|chr17:75288553:75288591:-	0	-
#Deleted in new
chr1	77532106	77532340	ENSG00000154027.18|AK5|pc|chr1:77532106:77532340:+	0	+
#Deleted in new
chr17	75344404	75344437	ENSG00000265987.1|AC011933.4|lncRNA|chr17:75344404:75344437:+	0	+
#Deleted in new
chr17	75387489	75387794	ENSG00000177885.13|GRB2|pc|chr17:75387489:75387794:-	0	-
#Deleted in new
chr1	77540495	77540689	ENSG00000154027.18|AK5|pc|chr1:77540495:77540689:+	0	+
#Deleted in new
chr17	75441158	75441243	ENSG00000177728.16|TMEM94|pc|chr17:75441158:75441243:+	0	+
#Partially deleted in new
chr17	75457293	75457685	ENSG00000177728.16|TMEM94|pc|chr17:75457293:75457685:+	0	+
#Deleted in new
chr17	75489800	75489817	ENSG00000177728.16|TMEM94|pc|chr17:75489800:75489817:+	0	+
#Partially deleted in new
chr17	75522825	75523335	ENSG00000182173.12|TSEN54|pc|chr17:75522825:75523335:+	0	+
#Deleted in new
chr17	75532492	75532566	ENSG00000073350.13|LLGL2|pc|chr17:75532492:75532566:+	0	+
#Deleted in new
chr17	7553586	7553825	ENSG00000239697.10|TNFSF12|pc|chr17:7553586:7553825:+	0	+
#Deleted in new
chr17	75538530	75538636	ENSG00000073350.13|LLGL2|pc|chr17:75538530:75538636:+	0	+
#Partially deleted in new
chr17	75546147	75546323	ENSG00000073350.13|LLGL2|pc|chr17:75546147:75546323:+	0	+
#Deleted in new
chr17	75600605	75600680	ENSG00000266714.7|MYO15B|pc|chr17:75600605:75600680:+	0	+
#Deleted in new
chr17	75600630	75600680	ENSG00000266714.7|MYO15B|pc|chr17:75600630:75600680:+	0	+
#Partially deleted in new
chr17	75602300	75602594	ENSG00000266714.7|MYO15B|pc|chr17:75602300:75602594:+	0	+
#Deleted in new
chr17	75606932	75607003	ENSG00000266714.7|MYO15B|pc|chr17:75606932:75607003:+	0	+
#Deleted in new
chr17	75606932	75607130	ENSG00000266714.7|MYO15B|pc|chr17:75606932:75607130:+	0	+
#Partially deleted in new
chr17	75638545	75638903	ENSG00000108469.14|RECQL5|pc|chr17:75638545:75638903:-	0	-
#Partially deleted in new
chr17	75679473	75679801	ENSG00000264829.1|AC087749.2|lncRNA|chr17:75679473:75679801:-	0	-
#Deleted in new
chr17	75683976	75684042	ENSG00000264270.1|AC087749.1|lncRNA|chr17:75683976:75684042:-	0	-
#Deleted in new
chr17	75684464	75684799	ENSG00000264270.1|AC087749.1|lncRNA|chr17:75684464:75684799:-	0	-
#Deleted in new
chr17	75690670	75690716	ENSG00000161526.14|SAP30BP|pc|chr17:75690670:75690716:+	0	+
#Deleted in new
chr17	75690670	75690772	ENSG00000161526.14|SAP30BP|pc|chr17:75690670:75690772:+	0	+
#Deleted in new
chr17	757096	757321	ENSG00000167699.13|GLOD4|pc|chr17:757096:757321:-	0	-
#Deleted in new
chr17	75746263	75746375	ENSG00000132470.13|ITGB4|pc|chr17:75746263:75746375:+	0	+
#Partially deleted in new
chr17	75751593	75751737	ENSG00000108479.11|GALK1|pc|chr17:75751593:75751737:-	0	-
#Deleted in new
chr17	75751678	75751737	ENSG00000108479.11|GALK1|pc|chr17:75751678:75751737:-	0	-
#Deleted in new
chr17	75751812	75751848	ENSG00000132470.13|ITGB4|pc|chr17:75751812:75751848:+	0	+
#Deleted in new
chr17	75808947	75809039	ENSG00000132478.9|UNK|pc|chr17:75808947:75809039:+	0	+
#Deleted in new
chr17	75813	75878	ENSG00000280279.1|AC240565.2|lncRNA|chr17:75813:75878:-	0	-
#Partially deleted in new
chr17	75851567	75852350	ENSG00000132471.11|WBP2|pc|chr17:75851567:75852350:-	0	-
#Deleted in new
chr17	75852655	75852820	ENSG00000132471.11|WBP2|pc|chr17:75852655:75852820:-	0	-
#Deleted in new
chr17	75856261	75856507	ENSG00000132471.11|WBP2|pc|chr17:75856261:75856507:-	0	-
#Deleted in new
chr17	7586374	7586488	ENSG00000129255.15|MPDU1|pc|chr17:7586374:7586488:+	0	+
#Deleted in new
chr17	75897059	75898026	ENSG00000267342.1|AC087289.2|lncRNA|chr17:75897059:75898026:+	0	+
#Deleted in new
chr17	75900463	75900552	ENSG00000204316.12|MRPL38|pc|chr17:75900463:75900552:-	0	-
#Deleted in new
chr17	75900773	75900863	ENSG00000204316.12|MRPL38|pc|chr17:75900773:75900863:-	0	-
#Deleted in new
chr17	75900773	75900924	ENSG00000204316.12|MRPL38|pc|chr17:75900773:75900924:-	0	-
#Partially deleted in new
chr17	75900794	75901027	ENSG00000204316.12|MRPL38|pc|chr17:75900794:75901027:-	0	-
#Partially deleted in new
chr17	75900811	75901027	ENSG00000204316.12|MRPL38|pc|chr17:75900811:75901027:-	0	-
#Deleted in new
chr17	75904221	75904313	ENSG00000267426.5|AC087289.3|pc|chr17:75904221:75904313:-	0	-
#Deleted in new
chr17	75904243	75904313	ENSG00000204316.12|MRPL38|pc|chr17:75904243:75904313:-	0	-
#Deleted in new
chr17	75905657	75905744	ENSG00000267426.5|AC087289.3|pc|chr17:75905657:75905744:-	0	-
#Deleted in new
chr17	75908120	75908196	ENSG00000267426.5|AC087289.3|pc|chr17:75908120:75908196:-	0	-
#Deleted in new
chr17	75909467	75909817	ENSG00000267426.5|AC087289.3|pc|chr17:75909467:75909817:-	0	-
#Deleted in new
chr17	75909573	75909696	ENSG00000267426.5|AC087289.3|pc|chr17:75909573:75909696:-	0	-
#Deleted in new
chr17	75909580	75909817	ENSG00000188878.19|FBF1|pc|chr17:75909580:75909817:-	0	-
#Partially deleted in new
chr17	75941506	75946795	ENSG00000161533.11|ACOX1|pc|chr17:75941506:75946795:-	0	-
#Partially deleted in new
chr17	75942595	75942912	ENSG00000161533.11|ACOX1|pc|chr17:75942595:75942912:-	0	-
#Deleted in new
chr17	75943410	75943576	ENSG00000161533.11|ACOX1|pc|chr17:75943410:75943576:-	0	-
#Deleted in new
chr17	75943831	75943993	ENSG00000267615.1|AC087289.4|lncRNA|chr17:75943831:75943993:+	0	+
#Deleted in new
chr17	75984580	75984718	ENSG00000257949.6|TEN1|pc|chr17:75984580:75984718:+	0	+
#Deleted in new
chr17	75984891	75985012	ENSG00000257949.6|TEN1|pc|chr17:75984891:75985012:+	0	+
#Deleted in new
chr17	76004501	76004704	ENSG00000167880.7|EVPL|pc|chr17:76004501:76004704:-	0	-
#Partially deleted in new
chr17	76044753	76045386	ENSG00000167881.14|SRP68|pc|chr17:76044753:76045386:-	0	-
#Partially deleted in new
chr17	76047905	76049647	ENSG00000167881.14|SRP68|pc|chr17:76047905:76049647:-	0	-
#Partially deleted in new
chr17	76079227	76079361	ENSG00000186919.12|ZACN|pc|chr17:76079227:76079361:+	0	+
#Partially deleted in new
chr17	76079887	76079994	ENSG00000186919.12|ZACN|pc|chr17:76079887:76079994:+	0	+
#Partially deleted in new
chr17	76079887	76080046	ENSG00000186919.12|ZACN|pc|chr17:76079887:76080046:+	0	+
#Deleted in new
chr17	76120330	76120454	ENSG00000182473.21|EXOC7|pc|chr17:76120330:76120454:-	0	-
#Deleted in new
chr17	76120863	76120978	ENSG00000182473.21|EXOC7|pc|chr17:76120863:76120978:-	0	-
#Deleted in new
chr17	76121427	76121576	ENSG00000182473.21|EXOC7|pc|chr17:76121427:76121576:-	0	-
#Partially deleted in new
chr17	76153711	76153788	ENSG00000267128.1|RNF157-AS1|lncRNA|chr17:76153711:76153788:+	0	+
#Partially deleted in new
chr17	76211876	76212482	ENSG00000141576.14|RNF157|pc|chr17:76211876:76212482:-	0	-
#Deleted in new
chr17	76301442	76301540	ENSG00000129646.14|QRICH2|pc|chr17:76301442:76301540:-	0	-
#Split in new
chr17	76309485	76311700	ENSG00000161542.16|PRPSAP1|pc|chr17:76309485:76311700:-	0	-
#Partially deleted in new
chr17	76353060	76353452	ENSG00000161542.16|PRPSAP1|pc|chr17:76353060:76353452:-	0	-
#Deleted in new
chr17	76354842	76354929	ENSG00000161542.16|PRPSAP1|pc|chr17:76354842:76354929:-	0	-
#Deleted in new
chr17	763564	765014	ENSG00000262228.2|AC087392.3|lncRNA|chr17:763564:765014:-	0	-
#Deleted in new
chr17	763564	765319	ENSG00000262228.2|AC087392.3|lncRNA|chr17:763564:765319:-	0	-
#Deleted in new
chr17	76379386	76379727	ENSG00000176170.13|SPHK1|pc|chr17:76379386:76379727:+	0	+
#Deleted in new
chr17	76381536	76381658	ENSG00000176170.13|SPHK1|pc|chr17:76381536:76381658:+	0	+
#Deleted in new
chr17	76459246	76459366	ENSG00000129673.9|AANAT|pc|chr17:76459246:76459366:+	0	+
#Deleted in new
chr17	76462315	76462480	ENSG00000129673.9|AANAT|pc|chr17:76462315:76462480:+	0	+
#Deleted in new
chr17	7646626	7646701	ENSG00000129244.8|ATP1B2|pc|chr17:7646626:7646701:+	0	+
#Deleted in new
chr17	76487410	76487909	ENSG00000129667.12|RHBDF2|pc|chr17:76487410:76487909:-	0	-
#Deleted in new
chr17	76487711	76487851	ENSG00000129667.12|RHBDF2|pc|chr17:76487711:76487851:-	0	-
#Deleted in new
chr17	76487711	76487909	ENSG00000129667.12|RHBDF2|pc|chr17:76487711:76487909:-	0	-
#Deleted in new
chr17	76487711	76488132	ENSG00000129667.12|RHBDF2|pc|chr17:76487711:76488132:-	0	-
#Deleted in new
chr17	76487711	76488178	ENSG00000129667.12|RHBDF2|pc|chr17:76487711:76488178:-	0	-
#Deleted in new
chr17	76487973	76488132	ENSG00000129667.12|RHBDF2|pc|chr17:76487973:76488132:-	0	-
#Deleted in new
chr17	76488014	76488132	ENSG00000129667.12|RHBDF2|pc|chr17:76488014:76488132:-	0	-
#Deleted in new
chr17	765015	765319	ENSG00000262228.2|AC087392.3|lncRNA|chr17:765015:765319:-	0	-
#Deleted in new
chr17	76531875	76532065	ENSG00000161544.9|CYGB|pc|chr17:76531875:76532065:-	0	-
#Deleted in new
chr17	76549950	76550233	ENSG00000267543.1|AC015802.3|lncRNA|chr17:76549950:76550233:+	0	+
#Deleted in new
chr17	76550539	76550826	ENSG00000267543.1|AC015802.3|lncRNA|chr17:76550539:76550826:+	0	+
#Partially deleted in new
chr17	76551351	76551750	ENSG00000272386.1|AC015802.5|lncRNA|chr17:76551351:76551750:+	0	+
#Deleted in new
chr17	76551579	76552089	ENSG00000267546.2|AC015802.4|lncRNA|chr17:76551579:76552089:-	0	-
#Deleted in new
chr17	76551779	76552222	ENSG00000267546.2|AC015802.4|lncRNA|chr17:76551779:76552222:-	0	-
#Deleted in new
chr17	76552836	76552931	ENSG00000267546.2|AC015802.4|lncRNA|chr17:76552836:76552931:-	0	-
#Deleted in new
chr17	76561287	76561398	ENSG00000163597.14|SNHG16|lncRNA|chr17:76561287:76561398:+	0	+
#Partially deleted in new
chr17	76561287	76561751	ENSG00000163597.14|SNHG16|lncRNA|chr17:76561287:76561751:+	0	+
#Split in new
chr17	76563118	76563753	ENSG00000163597.14|SNHG16|lncRNA|chr17:76563118:76563753:+	0	+
#Split in new
chr17	76563118	76565343	ENSG00000163597.14|SNHG16|lncRNA|chr17:76563118:76565343:+	0	+
#Split in new
chr17	76563118	76565348	ENSG00000163597.14|SNHG16|lncRNA|chr17:76563118:76565348:+	0	+
#Partially deleted in new
chr17	76563972	76565279	ENSG00000163597.14|SNHG16|lncRNA|chr17:76563972:76565279:+	0	+
#Deleted in new
chr17	7661778	7662014	ENSG00000141510.16|TP53|pc|chr17:7661778:7662014:-	0	-
#Partially deleted in new
chr17	76629394	76629711	ENSG00000070526.14|ST6GALNAC1|pc|chr17:76629394:76629711:-	0	-
#Deleted in new
chr17	76633594	76633815	ENSG00000070526.14|ST6GALNAC1|pc|chr17:76633594:76633815:-	0	-
#Deleted in new
chr17	76637470	76637736	ENSG00000070526.14|ST6GALNAC1|pc|chr17:76637470:76637736:-	0	-
#Deleted in new
chr17	76637599	76637736	ENSG00000070526.14|ST6GALNAC1|pc|chr17:76637599:76637736:-	0	-
#Deleted in new
chr17	76641807	76641904	ENSG00000070526.14|ST6GALNAC1|pc|chr17:76641807:76641904:-	0	-
#Deleted in new
chr17	76643507	76643660	ENSG00000070526.14|ST6GALNAC1|pc|chr17:76643507:76643660:-	0	-
#Deleted in new
chr17	76643507	76643693	ENSG00000070526.14|ST6GALNAC1|pc|chr17:76643507:76643693:-	0	-
#Deleted in new
chr17	76643507	76643757	ENSG00000070526.14|ST6GALNAC1|pc|chr17:76643507:76643757:-	0	-
#Deleted in new
chr17	76643507	76643774	ENSG00000070526.14|ST6GALNAC1|pc|chr17:76643507:76643774:-	0	-
#Deleted in new
chr17	76643507	76643786	ENSG00000070526.14|ST6GALNAC1|pc|chr17:76643507:76643786:-	0	-
#Deleted in new
chr17	76643507	76643838	ENSG00000070526.14|ST6GALNAC1|pc|chr17:76643507:76643838:-	0	-
#Deleted in new
chr17	7665415	7665531	ENSG00000141510.16|TP53|pc|chr17:7665415:7665531:-	0	-
#Partially deleted in new
chr17	7666901	7667425	ENSG00000141510.16|TP53|pc|chr17:7666901:7667425:-	0	-
#Partially deleted in new
chr17	76671941	76673658	ENSG00000261335.1|AC005837.1|lncRNA|chr17:76671941:76673658:+	0	+
#Partially deleted in new
chr17	76672550	76677702	ENSG00000182534.13|MXRA7|pc|chr17:76672550:76677702:-	0	-
#Deleted in new
chr17	76722	76866	ENSG00000280279.1|AC240565.2|lncRNA|chr17:76722:76866:-	0	-
#Partially deleted in new
chr17	76726842	76726879	ENSG00000181038.13|METTL23|pc|chr17:76726842:76726879:+	0	+
#Partially deleted in new
chr17	76726849	76726879	ENSG00000181038.13|METTL23|pc|chr17:76726849:76726879:+	0	+
#Partially deleted in new
chr17	76726850	76726879	ENSG00000181038.13|METTL23|pc|chr17:76726850:76726879:+	0	+
#Deleted in new
chr17	76745392	76745439	ENSG00000092931.11|MFSD11|pc|chr17:76745392:76745439:+	0	+
#Partially deleted in new
chr17	76769190	76769871	ENSG00000092931.11|MFSD11|pc|chr17:76769190:76769871:+	0	+
#Deleted in new
chr1	77676981	77677310	ENSG00000036549.12|ZZZ3|pc|chr1:77676981:77677310:-	0	-
#Deleted in new
chr17	76773096	76773351	ENSG00000092931.11|MFSD11|pc|chr17:76773096:76773351:+	0	+
#Deleted in new
chr17	76781040	76781449	ENSG00000092931.11|MFSD11|pc|chr17:76781040:76781449:+	0	+
#Deleted in new
chr17	76799043	76799544	ENSG00000267065.2|LINC02080|lncRNA|chr17:76799043:76799544:+	0	+
#Deleted in new
chr17	76804184	76805953	ENSG00000267065.2|LINC02080|lncRNA|chr17:76804184:76805953:+	0	+
#Deleted in new
chr17	76806287	76807102	ENSG00000267065.2|LINC02080|lncRNA|chr17:76806287:76807102:+	0	+
#Partially deleted in new
chr17	7685259	7686371	ENSG00000262251.1|AC087388.1|lncRNA|chr17:7685259:7686371:-	0	-
#Deleted in new
chr17	76856165	76856264	ENSG00000267535.1|LINC00868|lncRNA|chr17:76856165:76856264:+	0	+
#Deleted in new
chr17	76856168	76856264	ENSG00000267535.1|LINC00868|lncRNA|chr17:76856168:76856264:+	0	+
#Deleted in new
chr17	76858266	76858355	ENSG00000267535.1|LINC00868|lncRNA|chr17:76858266:76858355:+	0	+
#Deleted in new
chr17	76861475	76861830	ENSG00000267535.1|LINC00868|lncRNA|chr17:76861475:76861830:+	0	+
#Deleted in new
chr17	76861475	76861834	ENSG00000267535.1|LINC00868|lncRNA|chr17:76861475:76861834:+	0	+
#Deleted in new
chr17	76861475	76861836	ENSG00000267535.1|LINC00868|lncRNA|chr17:76861475:76861836:+	0	+
#Partially deleted in new
chr17	7688476	7688561	ENSG00000141499.16|WRAP53|pc|chr17:7688476:7688561:+	0	+
#Deleted in new
chr17	76913668	76914098	ENSG00000167889.12|MGAT5B|pc|chr17:76913668:76914098:+	0	+
#Deleted in new
chr17	76953666	76953710	ENSG00000267568.6|AC016168.2|lncRNA|chr17:76953666:76953710:-	0	-
#Deleted in new
chr17	76957022	76957657	ENSG00000267521.1|AC016168.1|lncRNA|chr17:76957022:76957657:-	0	-
#Deleted in new
chr17	76958135	76958222	ENSG00000267521.1|AC016168.1|lncRNA|chr17:76958135:76958222:-	0	-
#Deleted in new
chr17	76962891	76963049	ENSG00000267568.6|AC016168.2|lncRNA|chr17:76962891:76963049:-	0	-
#Deleted in new
chr17	76963892	76964143	ENSG00000267568.6|AC016168.2|lncRNA|chr17:76963892:76964143:-	0	-
#Partially deleted in new
chr17	76966284	76969530	ENSG00000280122.1|AC016168.3|lncRNA|chr17:76966284:76969530:-	0	-
#Deleted in new
chr17	77086715	77086863	ENSG00000129657.14|SEC14L1|pc|chr17:77086715:77086863:+	0	+
#Deleted in new
chr17	77086715	77086863	ENSG00000234912.11|SNHG20|lncRNA|chr17:77086715:77086863:+	0	+
#Partially deleted in new
chr17	77088776	77088877	ENSG00000129657.14|SEC14L1|pc|chr17:77088776:77088877:+	0	+
#Deleted in new
chr17	77093243	77093347	ENSG00000129657.14|SEC14L1|pc|chr17:77093243:77093347:+	0	+
#Deleted in new
chr17	77093243	77093347	ENSG00000234912.11|SNHG20|lncRNA|chr17:77093243:77093347:+	0	+
#Deleted in new
chr17	77093243	77093762	ENSG00000234912.11|SNHG20|lncRNA|chr17:77093243:77093762:+	0	+
#Partially deleted in new
chr17	77093243	77094990	ENSG00000234912.11|SNHG20|lncRNA|chr17:77093243:77094990:+	0	+
#Partially deleted in new
chr17	77094069	77094983	ENSG00000234912.11|SNHG20|lncRNA|chr17:77094069:77094983:+	0	+
#Deleted in new
chr17	77099017	77099174	ENSG00000129657.14|SEC14L1|pc|chr17:77099017:77099174:+	0	+
#Deleted in new
chr17	77099017	77099196	ENSG00000129657.14|SEC14L1|pc|chr17:77099017:77099196:+	0	+
#Partially deleted in new
chr17	77127872	77128103	ENSG00000129657.14|SEC14L1|pc|chr17:77127872:77128103:+	0	+
#Deleted in new
chr17	77130093	77130191	ENSG00000129657.14|SEC14L1|pc|chr17:77130093:77130191:+	0	+
#Deleted in new
chr17	77144645	77145051	ENSG00000129657.14|SEC14L1|pc|chr17:77144645:77145051:+	0	+
#Deleted in new
chr17	7723627	7723689	ENSG00000183914.14|DNAH2|pc|chr17:7723627:7723689:+	0	+
#Deleted in new
chr17	77257736	77258136	ENSG00000263718.2|AC068594.1|lncRNA|chr17:77257736:77258136:-	0	-
#Deleted in new
chr17	77257736	77258348	ENSG00000263718.2|AC068594.1|lncRNA|chr17:77257736:77258348:-	0	-
#Deleted in new
chr17	77258239	77258389	ENSG00000263718.2|AC068594.1|lncRNA|chr17:77258239:77258389:-	0	-
#Deleted in new
chr17	77273783	77274041	ENSG00000263718.2|AC068594.1|lncRNA|chr17:77273783:77274041:-	0	-
#Deleted in new
chr17	77274189	77274326	ENSG00000263718.2|AC068594.1|lncRNA|chr17:77274189:77274326:-	0	-
#Deleted in new
chr17	77274189	77274340	ENSG00000263718.2|AC068594.1|lncRNA|chr17:77274189:77274340:-	0	-
#Partially deleted in new
chr17	77280568	77280806	ENSG00000184640.17|SEPT9|pc|chr17:77280568:77280806:+	0	+
#Deleted in new
chr17	77294488	77294571	ENSG00000184640.17|SEPT9|pc|chr17:77294488:77294571:+	0	+
#Deleted in new
chr17	77294773	77294903	ENSG00000184640.17|SEPT9|pc|chr17:77294773:77294903:+	0	+
#Partially deleted in new
chr17	77323705	77323811	ENSG00000184640.17|SEPT9|pc|chr17:77323705:77323811:+	0	+
#Deleted in new
chr17	77426955	77427201	ENSG00000184640.17|SEPT9|pc|chr17:77426955:77427201:+	0	+
#Partially deleted in new
chr17	77450847	77450978	ENSG00000184640.17|SEPT9|pc|chr17:77450847:77450978:+	0	+
#Deleted in new
chr1	77745420	77745462	ENSG00000077254.14|USP33|pc|chr1:77745420:77745462:-	0	-
#Deleted in new
chr1	77745420	77745599	ENSG00000077254.14|USP33|pc|chr1:77745420:77745599:-	0	-
#Deleted in new
chr1	77745420	77745638	ENSG00000077254.14|USP33|pc|chr1:77745420:77745638:-	0	-
#Partially deleted in new
chr17	77456365	77456506	ENSG00000184640.17|SEPT9|pc|chr17:77456365:77456506:+	0	+
#Deleted in new
chr1	77746398	77746556	ENSG00000077254.14|USP33|pc|chr1:77746398:77746556:-	0	-
#Deleted in new
chr17	77469067	77469654	ENSG00000267263.1|AC111170.2|lncRNA|chr17:77469067:77469654:+	0	+
#Partially deleted in new
chr17	77469161	77469692	ENSG00000267016.1|AC111170.1|lncRNA|chr17:77469161:77469692:-	0	-
#Deleted in new
chr17	77475242	77475903	ENSG00000184640.17|SEPT9|pc|chr17:77475242:77475903:+	0	+
#Partially deleted in new
chr17	77482143	77484128	ENSG00000184640.17|SEPT9|pc|chr17:77482143:77484128:+	0	+
#Deleted in new
chr17	77496213	77496367	ENSG00000184640.17|SEPT9|pc|chr17:77496213:77496367:+	0	+
#Deleted in new
chr17	77530460	77530939	ENSG00000267665.1|AC021683.3|lncRNA|chr17:77530460:77530939:+	0	+
#Deleted in new
chr17	77533097	77533266	ENSG00000267665.1|AC021683.3|lncRNA|chr17:77533097:77533266:+	0	+
#Deleted in new
chr17	77533177	77533266	ENSG00000267665.1|AC021683.3|lncRNA|chr17:77533177:77533266:+	0	+
#Deleted in new
chr17	77533180	77533266	ENSG00000267665.1|AC021683.3|lncRNA|chr17:77533180:77533266:+	0	+
#Deleted in new
chr17	77534454	77534611	ENSG00000267665.1|AC021683.3|lncRNA|chr17:77534454:77534611:+	0	+
#Deleted in new
chr17	77534454	77534683	ENSG00000267665.1|AC021683.3|lncRNA|chr17:77534454:77534683:+	0	+
#Deleted in new
chr17	77534454	77534687	ENSG00000267665.1|AC021683.3|lncRNA|chr17:77534454:77534687:+	0	+
#Deleted in new
chr17	77534454	77534712	ENSG00000267665.1|AC021683.3|lncRNA|chr17:77534454:77534712:+	0	+
#Deleted in new
chr17	77536239	77536592	ENSG00000267665.1|AC021683.3|lncRNA|chr17:77536239:77536592:+	0	+
#Deleted in new
chr17	77546939	77547092	ENSG00000267506.5|AC021683.2|lncRNA|chr17:77546939:77547092:+	0	+
#Deleted in new
chr17	77546940	77547092	ENSG00000267506.5|AC021683.2|lncRNA|chr17:77546940:77547092:+	0	+
#Deleted in new
chr17	77547970	77547994	ENSG00000267506.5|AC021683.2|lncRNA|chr17:77547970:77547994:+	0	+
#Partially deleted in new
chr17	77560944	77563243	ENSG00000267506.5|AC021683.2|lncRNA|chr17:77560944:77563243:+	0	+
#Deleted in new
chr17	77563367	77564944	ENSG00000267466.1|AC021683.1|lncRNA|chr17:77563367:77564944:-	0	-
#Deleted in new
chr17	77568505	77568695	ENSG00000267466.1|AC021683.1|lncRNA|chr17:77568505:77568695:-	0	-
#Partially deleted in new
chr1	77759642	77759689	ENSG00000077254.14|USP33|pc|chr1:77759642:77759689:-	0	-
#Deleted in new
chr17	77728409	77728559	ENSG00000267790.1|LINC01987|lncRNA|chr17:77728409:77728559:-	0	-
#Partially deleted in new
chr1	77779907	77780192	ENSG00000180488.14|MIGA1|pc|chr1:77779907:77780192:+	0	+
#Partially deleted in new
chr17	78041046	78041117	ENSG00000078687.17|TNRC6C|pc|chr17:78041046:78041117:+	0	+
#Deleted in new
chr17	780617	780738	ENSG00000167699.13|GLOD4|pc|chr17:780617:780738:-	0	-
#Deleted in new
chr17	780683	780738	ENSG00000167699.13|GLOD4|pc|chr17:780683:780738:-	0	-
#Partially deleted in new
chr17	78107397	78110335	ENSG00000204282.4|TNRC6C-AS1|lncRNA|chr17:78107397:78110335:-	0	-
#Deleted in new
chr17	78109050	78111799	ENSG00000204282.4|TNRC6C-AS1|lncRNA|chr17:78109050:78111799:-	0	-
#Partially deleted in new
chr17	78110457	78113211	ENSG00000141524.15|TMC6|pc|chr17:78110457:78113211:-	0	-
#Partially deleted in new
chr17	78112918	78113211	ENSG00000141524.15|TMC6|pc|chr17:78112918:78113211:-	0	-
#Partially deleted in new
chr17	78112920	78113211	ENSG00000141524.15|TMC6|pc|chr17:78112920:78113211:-	0	-
#Partially deleted in new
chr17	78112921	78113211	ENSG00000141524.15|TMC6|pc|chr17:78112921:78113211:-	0	-
#Partially deleted in new
chr17	78112924	78113211	ENSG00000141524.15|TMC6|pc|chr17:78112924:78113211:-	0	-
#Partially deleted in new
chr17	78120176	78120832	ENSG00000141524.15|TMC6|pc|chr17:78120176:78120832:-	0	-
#Deleted in new
chr17	78120408	78120555	ENSG00000141524.15|TMC6|pc|chr17:78120408:78120555:-	0	-
#Deleted in new
chr17	78122945	78123123	ENSG00000141524.15|TMC6|pc|chr17:78122945:78123123:-	0	-
#Partially deleted in new
chr17	78136619	78137047	ENSG00000167895.14|TMC8|pc|chr17:78136619:78137047:+	0	+
#Deleted in new
chr17	78160063	78160106	ENSG00000187997.11|C17orf99|pc|chr17:78160063:78160106:+	0	+
#Deleted in new
chr17	78165888	78166135	ENSG00000187997.11|C17orf99|pc|chr17:78165888:78166135:+	0	+
#Deleted in new
chr17	78165888	78166154	ENSG00000187997.11|C17orf99|pc|chr17:78165888:78166154:+	0	+
#Deleted in new
chr17	78165888	78166177	ENSG00000187997.11|C17orf99|pc|chr17:78165888:78166177:+	0	+
#Deleted in new
chr17	78173090	78173335	ENSG00000108639.7|SYNGR2|pc|chr17:78173090:78173335:+	0	+
#Deleted in new
chr17	78183753	78183777	ENSG00000167900.11|TK1|pc|chr17:78183753:78183777:-	0	-
#Partially deleted in new
chr17	78186928	78187233	ENSG00000167900.11|TK1|pc|chr17:78186928:78187233:-	0	-
#Partially deleted in new
chr17	78187316	78187433	ENSG00000183077.15|AFMID|pc|chr17:78187316:78187433:+	0	+
#Deleted in new
chr17	78192636	78192785	ENSG00000183077.15|AFMID|pc|chr17:78192636:78192785:+	0	+
#Partially deleted in new
chr17	78202702	78204039	ENSG00000183077.15|AFMID|pc|chr17:78202702:78204039:+	0	+
#Deleted in new
chr17	78215965	78216034	ENSG00000089685.14|BIRC5|pc|chr17:78215965:78216034:+	0	+
#Partially deleted in new
chr17	78215965	78216066	ENSG00000089685.14|BIRC5|pc|chr17:78215965:78216066:+	0	+
#Deleted in new
chr17	78222827	78222979	ENSG00000089685.14|BIRC5|pc|chr17:78222827:78222979:+	0	+
#Deleted in new
chr17	78222827	78222992	ENSG00000089685.14|BIRC5|pc|chr17:78222827:78222992:+	0	+
#Partially deleted in new
chr17	78223464	78225636	ENSG00000089685.14|BIRC5|pc|chr17:78223464:78225636:+	0	+
#Deleted in new
chr17	78261348	78261913	ENSG00000204277.1|LINC01993|lncRNA|chr17:78261348:78261913:-	0	-
#Partially deleted in new
chr17	78270651	78270846	ENSG00000204277.1|LINC01993|lncRNA|chr17:78270651:78270846:-	0	-
#Partially deleted in new
chr17	78343964	78344261	ENSG00000267737.1|AC087645.2|lncRNA|chr17:78343964:78344261:+	0	+
#Partially deleted in new
chr17	78343964	78344357	ENSG00000267737.1|AC087645.2|lncRNA|chr17:78343964:78344357:+	0	+
#Deleted in new
chr17	78367192	78367266	ENSG00000266970.1|AC061992.1|lncRNA|chr17:78367192:78367266:+	0	+
#Deleted in new
chr17	78368727	78368893	ENSG00000266970.1|AC061992.1|lncRNA|chr17:78368727:78368893:+	0	+
#Deleted in new
chr17	78373774	78373911	ENSG00000266970.1|AC061992.1|lncRNA|chr17:78373774:78373911:+	0	+
#Deleted in new
chr17	78382663	78382785	ENSG00000087157.18|PGS1|pc|chr17:78382663:78382785:+	0	+
#Partially deleted in new
chr17	78419545	78421911	ENSG00000087157.18|PGS1|pc|chr17:78419545:78421911:+	0	+
#Deleted in new
chr17	78420221	78420323	ENSG00000087157.18|PGS1|pc|chr17:78420221:78420323:+	0	+
#Partially deleted in new
chr17	78449413	78450298	ENSG00000187775.16|DNAH17|pc|chr17:78449413:78450298:-	0	-
#Deleted in new
chr17	78472661	78472774	ENSG00000187775.16|DNAH17|pc|chr17:78472661:78472774:-	0	-
#Deleted in new
chr17	78496652	78497036	ENSG00000267432.5|DNAH17-AS1|lncRNA|chr17:78496652:78497036:+	0	+
#Deleted in new
chr17	78496855	78497036	ENSG00000267432.5|DNAH17-AS1|lncRNA|chr17:78496855:78497036:+	0	+
#Deleted in new
chr17	78502142	78502537	ENSG00000187775.16|DNAH17|pc|chr17:78502142:78502537:-	0	-
#Deleted in new
chr17	78617388	78617626	ENSG00000267123.5|LINC02081|lncRNA|chr17:78617388:78617626:-	0	-
#Deleted in new
chr17	78617468	78617626	ENSG00000267123.5|LINC02081|lncRNA|chr17:78617468:78617626:-	0	-
#Deleted in new
chr17	78618761	78619044	ENSG00000267123.5|LINC02081|lncRNA|chr17:78618761:78619044:-	0	-
#Deleted in new
chr17	78624191	78624315	ENSG00000267123.5|LINC02081|lncRNA|chr17:78624191:78624315:-	0	-
#Deleted in new
chr17	78627917	78628035	ENSG00000267123.5|LINC02081|lncRNA|chr17:78627917:78628035:-	0	-
#Deleted in new
chr17	78630031	78630170	ENSG00000267123.5|LINC02081|lncRNA|chr17:78630031:78630170:-	0	-
#Deleted in new
chr17	78630031	78630280	ENSG00000267123.5|LINC02081|lncRNA|chr17:78630031:78630280:-	0	-
#Deleted in new
chr17	78630031	78630430	ENSG00000267123.5|LINC02081|lncRNA|chr17:78630031:78630430:-	0	-
#Deleted in new
chr17	78631948	78632051	ENSG00000267123.5|LINC02081|lncRNA|chr17:78631948:78632051:-	0	-
#Deleted in new
chr17	78631989	78632057	ENSG00000267123.5|LINC02081|lncRNA|chr17:78631989:78632057:-	0	-
#Deleted in new
chr17	7866490	7866558	ENSG00000183011.13|NAA38|pc|chr17:7866490:7866558:-	0	-
#Deleted in new
chr17	78676994	78677050	ENSG00000108669.16|CYTH1|pc|chr17:78676994:78677050:-	0	-
#Deleted in new
chr17	78727657	78727965	ENSG00000108669.16|CYTH1|pc|chr17:78727657:78727965:-	0	-
#Deleted in new
chr17	78787380	78787658	ENSG00000055483.19|USP36|pc|chr17:78787380:78787658:-	0	-
#Deleted in new
chr17	78787465	78787658	ENSG00000055483.19|USP36|pc|chr17:78787465:78787658:-	0	-
#Deleted in new
chr17	78787466	78787658	ENSG00000055483.19|USP36|pc|chr17:78787466:78787658:-	0	-
#Deleted in new
chr17	78791862	78792080	ENSG00000055483.19|USP36|pc|chr17:78791862:78792080:-	0	-
#Partially deleted in new
chr1	77881347	77881898	ENSG00000235927.4|NEXN-AS1|lncRNA|chr1:77881347:77881898:-	0	-
#Deleted in new
chr17	78823112	78823183	ENSG00000055483.19|USP36|pc|chr17:78823112:78823183:-	0	-
#Deleted in new
chr17	78823121	78823183	ENSG00000055483.19|USP36|pc|chr17:78823121:78823183:-	0	-
#Partially deleted in new
chr17	78826472	78827347	ENSG00000055483.19|USP36|pc|chr17:78826472:78827347:-	0	-
#Partially deleted in new
chr17	78840341	78840647	ENSG00000055483.19|USP36|pc|chr17:78840341:78840647:-	0	-
#Deleted in new
chr17	78841260	78841441	ENSG00000055483.19|USP36|pc|chr17:78841260:78841441:-	0	-
#Partially deleted in new
chr17	78855963	78857646	ENSG00000035862.12|TIMP2|pc|chr17:78855963:78857646:-	0	-
#Deleted in new
chr17	78874028	78874150	ENSG00000035862.12|TIMP2|pc|chr17:78874028:78874150:-	0	-
#Deleted in new
chr1	77889467	77889539	ENSG00000235927.4|NEXN-AS1|lncRNA|chr1:77889467:77889539:-	0	-
#Deleted in new
chr17	78897263	78900152	ENSG00000279339.1|AC100788.2|lncRNA|chr17:78897263:78900152:+	0	+
#Deleted in new
chr17	78900968	78901257	ENSG00000178404.9|CEP295NL|pc|chr17:78900968:78901257:-	0	-
#Deleted in new
chr17	78904116	78905024	ENSG00000267491.1|AC100788.1|lncRNA|chr17:78904116:78905024:+	0	+
#Deleted in new
chr17	78977305	78977323	ENSG00000108679.12|LGALS3BP|pc|chr17:78977305:78977323:-	0	-
#Deleted in new
chr17	78977403	78977473	ENSG00000108679.12|LGALS3BP|pc|chr17:78977403:78977473:-	0	-
#Deleted in new
chr17	78979445	78979586	ENSG00000108679.12|LGALS3BP|pc|chr17:78979445:78979586:-	0	-
#Partially deleted in new
chr17	78991719	78992140	ENSG00000171302.16|CANT1|pc|chr17:78991719:78992140:-	0	-
#Partially deleted in new
chr17	78992409	78992761	ENSG00000171302.16|CANT1|pc|chr17:78992409:78992761:-	0	-
#Partially deleted in new
chr17	78997576	78997963	ENSG00000171302.16|CANT1|pc|chr17:78997576:78997963:-	0	-
#Partially deleted in new
chr17	78997665	78997963	ENSG00000171302.16|CANT1|pc|chr17:78997665:78997963:-	0	-
#Deleted in new
chr17	78997839	78997963	ENSG00000171302.16|CANT1|pc|chr17:78997839:78997963:-	0	-
#Deleted in new
chr17	79000099	79000270	ENSG00000171302.16|CANT1|pc|chr17:79000099:79000270:-	0	-
#Partially deleted in new
chr17	79019208	79019616	ENSG00000265096.1|C1QTNF1-AS1|lncRNA|chr17:79019208:79019616:-	0	-
#Deleted in new
chr17	79025662	79025935	ENSG00000173918.14|C1QTNF1|pc|chr17:79025662:79025935:+	0	+
#Deleted in new
chr17	790278	790525	ENSG00000262434.1|AC087392.4|lncRNA|chr17:790278:790525:-	0	-
#Deleted in new
chr17	79041725	79041835	ENSG00000173918.14|C1QTNF1|pc|chr17:79041725:79041835:+	0	+
#Partially deleted in new
chr17	79097691	79098508	ENSG00000167281.18|RBFOX3|pc|chr17:79097691:79098508:-	0	-
#Partially deleted in new
chr17	79097691	79100410	ENSG00000167281.18|RBFOX3|pc|chr17:79097691:79100410:-	0	-
#Partially deleted in new
chr17	79233626	79235805	ENSG00000167281.18|RBFOX3|pc|chr17:79233626:79235805:-	0	-
#Partially deleted in new
chr17	7925309	7925501	ENSG00000170049.9|KCNAB3|pc|chr17:7925309:7925501:-	0	-
#Deleted in new
chr1	77931661	77932054	ENSG00000162614.18|NEXN|pc|chr1:77931661:77932054:+	0	+
#Deleted in new
chr17	79423706	79424120	ENSG00000167281.18|RBFOX3|pc|chr17:79423706:79424120:-	0	-
#Deleted in new
chr17	79508770	79508868	ENSG00000167281.18|RBFOX3|pc|chr17:79508770:79508868:-	0	-
#Deleted in new
chr17	79603760	79603921	ENSG00000263278.2|AC233701.1|lncRNA|chr17:79603760:79603921:-	0	-
#Split in new
chr17	79708471	79712317	ENSG00000267719.1|LINC02078|lncRNA|chr17:79708471:79712317:+	0	+
#Deleted in new
chr17	79741793	79742222	ENSG00000182156.9|ENPP7|pc|chr17:79741793:79742222:+	0	+
#Deleted in new
chr1	77981204	77981302	ENSG00000162616.8|DNAJB4|pc|chr1:77981204:77981302:+	0	+
#Deleted in new
chr17	79823451	79823538	ENSG00000262772.1|LINC01977|lncRNA|chr17:79823451:79823538:+	0	+
#Deleted in new
chr17	79823794	79823874	ENSG00000262772.1|LINC01977|lncRNA|chr17:79823794:79823874:+	0	+
#Partially deleted in new
chr17	79915251	79915413	ENSG00000262585.1|LINC01979|lncRNA|chr17:79915251:79915413:-	0	-
#Partially deleted in new
chr17	79922690	79924010	ENSG00000262188.1|LINC01978|lncRNA|chr17:79922690:79924010:+	0	+
#Deleted in new
chr1	77992753	77992866	ENSG00000162616.8|DNAJB4|pc|chr1:77992753:77992866:+	0	+
#Deleted in new
chr17	79943855	79944107	ENSG00000167291.15|TBC1D16|pc|chr17:79943855:79944107:-	0	-
#Deleted in new
chr17	79944044	79944107	ENSG00000167291.15|TBC1D16|pc|chr17:79944044:79944107:-	0	-
#Deleted in new
chr17	79992798	79992841	ENSG00000262172.1|AC116025.2|lncRNA|chr17:79992798:79992841:-	0	-
#Deleted in new
chr17	80023893	80024014	ENSG00000261978.1|AC116025.1|lncRNA|chr17:80023893:80024014:+	0	+
#Deleted in new
chr17	80023930	80024014	ENSG00000261978.1|AC116025.1|lncRNA|chr17:80023930:80024014:+	0	+
#Deleted in new
chr17	80025810	80026107	ENSG00000261978.1|AC116025.1|lncRNA|chr17:80025810:80026107:+	0	+
#Deleted in new
chr17	80025813	80026107	ENSG00000261978.1|AC116025.1|lncRNA|chr17:80025813:80026107:+	0	+
#Partially deleted in new
chr17	80039811	80040535	ENSG00000141519.14|CCDC40|pc|chr17:80039811:80040535:+	0	+
#Deleted in new
chr17	80040004	80040040	ENSG00000141519.14|CCDC40|pc|chr17:80040004:80040040:+	0	+
#Partially deleted in new
chr17	80066082	80066770	ENSG00000141519.14|CCDC40|pc|chr17:80066082:80066770:+	0	+
#Deleted in new
chr17	80066873	80067288	ENSG00000141519.14|CCDC40|pc|chr17:80066873:80067288:+	0	+
#Deleted in new
chr17	80067504	80067901	ENSG00000141519.14|CCDC40|pc|chr17:80067504:80067901:+	0	+
#Partially deleted in new
chr17	80088104	80088189	ENSG00000141519.14|CCDC40|pc|chr17:80088104:80088189:+	0	+
#Deleted in new
chr17	80088296	80088394	ENSG00000141519.14|CCDC40|pc|chr17:80088296:80088394:+	0	+
#Deleted in new
chr17	80092078	80092145	ENSG00000141519.14|CCDC40|pc|chr17:80092078:80092145:+	0	+
#Partially deleted in new
chr17	80101810	80102733	ENSG00000171298.12|GAA|pc|chr17:80101810:80102733:+	0	+
#Partially deleted in new
chr17	80136802	80137501	ENSG00000141543.9|EIF4A3|pc|chr17:80136802:80137501:-	0	-
#Deleted in new
chr17	80147249	80148596	ENSG00000279259.1|AC087741.3|lncRNA|chr17:80147249:80148596:+	0	+
#Deleted in new
chr17	80149626	80149798	ENSG00000275479.1|AC087741.2|lncRNA|chr17:80149626:80149798:+	0	+
#Deleted in new
chr17	80169991	80170056	ENSG00000141527.16|CARD14|pc|chr17:80169991:80170056:+	0	+
#Deleted in new
chr17	80170002	80170056	ENSG00000141527.16|CARD14|pc|chr17:80170002:80170056:+	0	+
#Deleted in new
chr17	80170011	80170056	ENSG00000141527.16|CARD14|pc|chr17:80170011:80170056:+	0	+
#Deleted in new
chr17	80170033	80170056	ENSG00000141527.16|CARD14|pc|chr17:80170033:80170056:+	0	+
#Deleted in new
chr17	80170276	80170534	ENSG00000141527.16|CARD14|pc|chr17:80170276:80170534:+	0	+
#Deleted in new
chr17	80172905	80173228	ENSG00000141527.16|CARD14|pc|chr17:80172905:80173228:+	0	+
#Deleted in new
chr17	80179103	80179133	ENSG00000141527.16|CARD14|pc|chr17:80179103:80179133:+	0	+
#Deleted in new
chr17	80179103	80179301	ENSG00000141527.16|CARD14|pc|chr17:80179103:80179301:+	0	+
#Deleted in new
chr17	80204498	80204596	ENSG00000262580.5|AC087741.1|lncRNA|chr17:80204498:80204596:-	0	-
#Deleted in new
chr17	80204498	80204617	ENSG00000262580.5|AC087741.1|lncRNA|chr17:80204498:80204617:-	0	-
#Partially deleted in new
chr17	80205332	80205434	ENSG00000262580.5|AC087741.1|lncRNA|chr17:80205332:80205434:-	0	-
#Deleted in new
chr17	80207596	80207685	ENSG00000181523.12|SGSH|pc|chr17:80207596:80207685:-	0	-
#Deleted in new
chr17	80207604	80207685	ENSG00000181523.12|SGSH|pc|chr17:80207604:80207685:-	0	-
#Deleted in new
chr17	80207655	80207685	ENSG00000181523.12|SGSH|pc|chr17:80207655:80207685:-	0	-
#Deleted in new
chr17	80211868	80211923	ENSG00000181523.12|SGSH|pc|chr17:80211868:80211923:-	0	-
#Deleted in new
chr17	80315650	80315723	ENSG00000262979.1|AC124319.1|lncRNA|chr17:80315650:80315723:+	0	+
#Deleted in new
chr17	80316053	80316633	ENSG00000262979.1|AC124319.1|lncRNA|chr17:80316053:80316633:+	0	+
#Partially deleted in new
chr17	80319189	80321463	ENSG00000173821.19|RNF213|pc|chr17:80319189:80321463:+	0	+
#Partially deleted in new
chr17	80339897	80342058	ENSG00000280248.1|AC124319.4|lncRNA|chr17:80339897:80342058:+	0	+
#Partially deleted in new
chr17	80393344	80398786	ENSG00000173821.19|RNF213|pc|chr17:80393344:80398786:+	0	+
#Deleted in new
chr17	80414928	80415118	ENSG00000263069.5|AC124319.2|lncRNA|chr17:80414928:80415118:-	0	-
#Partially deleted in new
chr17	80414928	80415168	ENSG00000263069.5|AC124319.2|lncRNA|chr17:80414928:80415168:-	0	-
#Partially deleted in new
chr17	80415451	80415518	ENSG00000173818.16|ENDOV|pc|chr17:80415451:80415518:+	0	+
#Partially deleted in new
chr17	80415451	80415610	ENSG00000173818.16|ENDOV|pc|chr17:80415451:80415610:+	0	+
#Partially deleted in new
chr17	80415457	80415610	ENSG00000173818.16|ENDOV|pc|chr17:80415457:80415610:+	0	+
#Partially deleted in new
chr17	80415486	80415610	ENSG00000173818.16|ENDOV|pc|chr17:80415486:80415610:+	0	+
#Deleted in new
chr17	80416939	80417145	ENSG00000173818.16|ENDOV|pc|chr17:80416939:80417145:+	0	+
#Deleted in new
chr17	80418441	80418606	ENSG00000173818.16|ENDOV|pc|chr17:80418441:80418606:+	0	+
#Deleted in new
chr17	80419585	80419720	ENSG00000173818.16|ENDOV|pc|chr17:80419585:80419720:+	0	+
#Deleted in new
chr17	80420049	80420533	ENSG00000173818.16|ENDOV|pc|chr17:80420049:80420533:+	0	+
#Deleted in new
chr17	80436132	80438081	ENSG00000173818.16|ENDOV|pc|chr17:80436132:80438081:+	0	+
#Deleted in new
chr17	80436132	80438082	ENSG00000173818.16|ENDOV|pc|chr17:80436132:80438082:+	0	+
#Deleted in new
chr17	80436132	80438086	ENSG00000173818.16|ENDOV|pc|chr17:80436132:80438086:+	0	+
#Deleted in new
chr17	80453734	80454729	ENSG00000260369.2|AC120024.1|lncRNA|chr17:80453734:80454729:-	0	-
#Deleted in new
chr17	80463450	80465593	ENSG00000279273.1|AC120024.4|lncRNA|chr17:80463450:80465593:-	0	-
#Deleted in new
chr17	8056224	8056691	ENSG00000263427.1|AC129492.2|lncRNA|chr17:8056224:8056691:-	0	-
#Deleted in new
chr17	8057571	8057621	ENSG00000263427.1|AC129492.2|lncRNA|chr17:8057571:8057621:-	0	-
#Deleted in new
chr17	80593243	80593805	ENSG00000141564.13|RPTOR|pc|chr17:80593243:80593805:+	0	+
#Deleted in new
chr17	80708932	80709114	ENSG00000141564.13|RPTOR|pc|chr17:80708932:80709114:+	0	+
#Deleted in new
chr17	80743286	80743427	ENSG00000141564.13|RPTOR|pc|chr17:80743286:80743427:+	0	+
#Deleted in new
chr17	80804280	80804508	ENSG00000262833.1|AC016245.1|lncRNA|chr17:80804280:80804508:-	0	-
#Deleted in new
chr17	80804664	80804874	ENSG00000262833.1|AC016245.1|lncRNA|chr17:80804664:80804874:-	0	-
#Deleted in new
chr17	80804966	80805632	ENSG00000262833.1|AC016245.1|lncRNA|chr17:80804966:80805632:-	0	-
#Partially deleted in new
chr17	80823078	80823620	ENSG00000141564.13|RPTOR|pc|chr17:80823078:80823620:+	0	+
#Deleted in new
chr17	80909553	80909867	ENSG00000141564.13|RPTOR|pc|chr17:80909553:80909867:+	0	+
#Deleted in new
chr17	80941836	80942033	ENSG00000262313.1|AC127496.3|lncRNA|chr17:80941836:80942033:-	0	-
#Deleted in new
chr17	80948549	80948659	ENSG00000141564.13|RPTOR|pc|chr17:80948549:80948659:+	0	+
#Deleted in new
chr17	80960765	80961010	ENSG00000262662.1|AC127496.4|lncRNA|chr17:80960765:80961010:-	0	-
#Partially deleted in new
chr17	80966238	80968945	ENSG00000261924.1|AC127496.1|lncRNA|chr17:80966238:80968945:-	0	-
#Deleted in new
chr17	80968219	80968945	ENSG00000261924.1|AC127496.1|lncRNA|chr17:80968219:80968945:-	0	-
#Deleted in new
chr17	80969713	80971078	ENSG00000261924.1|AC127496.1|lncRNA|chr17:80969713:80971078:-	0	-
#Deleted in new
chr17	80970787	80971213	ENSG00000261924.1|AC127496.1|lncRNA|chr17:80970787:80971213:-	0	-
#Deleted in new
chr17	80991597	80991673	ENSG00000176108.9|CHMP6|pc|chr17:80991597:80991673:+	0	+
#Deleted in new
chr17	80999826	81000130	ENSG00000263218.2|AC127496.6|lncRNA|chr17:80999826:81000130:-	0	-
#Deleted in new
chr17	80999984	81000127	ENSG00000263218.2|AC127496.6|lncRNA|chr17:80999984:81000127:-	0	-
#Deleted in new
chr17	81003334	81005132	ENSG00000280351.2|AC127496.7|lncRNA|chr17:81003334:81005132:+	0	+
#Deleted in new
chr17	81009389	81009517	ENSG00000176108.9|CHMP6|pc|chr17:81009389:81009517:+	0	+
#Deleted in new
chr17	81017968	81018206	ENSG00000262873.1|AC127496.5|lncRNA|chr17:81017968:81018206:-	0	-
#Deleted in new
chr17	81017968	81018348	ENSG00000262873.1|AC127496.5|lncRNA|chr17:81017968:81018348:-	0	-
#Deleted in new
chr17	81018379	81018492	ENSG00000262873.1|AC127496.5|lncRNA|chr17:81018379:81018492:-	0	-
#Deleted in new
chr17	81018445	81018589	ENSG00000262873.1|AC127496.5|lncRNA|chr17:81018445:81018589:-	0	-
#Deleted in new
chr17	81019666	81020011	ENSG00000262873.1|AC127496.5|lncRNA|chr17:81019666:81020011:-	0	-
#Deleted in new
chr17	81023544	81023672	ENSG00000262098.1|AC127496.2|lncRNA|chr17:81023544:81023672:-	0	-
#Deleted in new
chr17	81076264	81076502	ENSG00000175866.15|BAIAP2|pc|chr17:81076264:81076502:+	0	+
#Partially deleted in new
chr17	81082988	81083407	ENSG00000175866.15|BAIAP2|pc|chr17:81082988:81083407:+	0	+
#Partially deleted in new
chr17	81087491	81087847	ENSG00000175866.15|BAIAP2|pc|chr17:81087491:81087847:+	0	+
#Deleted in new
chr17	81098117	81098195	ENSG00000175866.15|BAIAP2|pc|chr17:81098117:81098195:+	0	+
#Partially deleted in new
chr17	81105085	81106146	ENSG00000175866.15|BAIAP2|pc|chr17:81105085:81106146:+	0	+
#Partially deleted in new
chr17	81116229	81117432	ENSG00000175866.15|BAIAP2|pc|chr17:81116229:81117432:+	0	+
#Deleted in new
chr17	81126657	81126817	ENSG00000181409.11|AATK|pc|chr17:81126657:81126817:-	0	-
#Deleted in new
chr1	7811488	7811604	ENSG00000236266.1|Z98884.1|lncRNA|chr1:7811488:7811604:-	0	-
#Deleted in new
chr17	81166676	81166844	ENSG00000225180.7|AATK-AS1|pc|chr17:81166676:81166844:+	0	+
#Partially deleted in new
chr17	81182964	81183164	ENSG00000225180.7|AATK-AS1|pc|chr17:81182964:81183164:+	0	+
#Partially deleted in new
chr17	81197392	81197455	ENSG00000262115.1|AC027601.2|lncRNA|chr17:81197392:81197455:+	0	+
#Deleted in new
chr17	81203867	81204071	ENSG00000141577.13|CEP131|pc|chr17:81203867:81204071:-	0	-
#Deleted in new
chr17	81238132	81238159	ENSG00000167302.10|TEPSIN|pc|chr17:81238132:81238159:-	0	-
#Partially deleted in new
chr17	81238513	81238873	ENSG00000167302.10|TEPSIN|pc|chr17:81238513:81238873:-	0	-
#Deleted in new
chr17	81239771	81239898	ENSG00000224877.3|NDUFAF8|pc|chr17:81239771:81239898:+	0	+
#Deleted in new
chr17	81239913	81240439	ENSG00000224877.3|NDUFAF8|pc|chr17:81239913:81240439:+	0	+
#Deleted in new
chr17	81303770	81305362	ENSG00000185168.5|LINC00482|lncRNA|chr17:81303770:81305362:-	0	-
#Deleted in new
chr17	81305325	81305362	ENSG00000185168.5|LINC00482|lncRNA|chr17:81305325:81305362:-	0	-
#Deleted in new
chr17	81305665	81305817	ENSG00000185168.5|LINC00482|lncRNA|chr17:81305665:81305817:-	0	-
#Deleted in new
chr17	81305665	81305991	ENSG00000185168.5|LINC00482|lncRNA|chr17:81305665:81305991:-	0	-
#Deleted in new
chr17	81307629	81307727	ENSG00000185168.5|LINC00482|lncRNA|chr17:81307629:81307727:-	0	-
#Deleted in new
chr17	81307629	81307844	ENSG00000185168.5|LINC00482|lncRNA|chr17:81307629:81307844:-	0	-
#Partially deleted in new
chr17	81311269	81313985	ENSG00000185332.6|TMEM105|pc|chr17:81311269:81313985:-	0	-
#Deleted in new
chr17	81327594	81327941	ENSG00000185332.6|TMEM105|pc|chr17:81327594:81327941:-	0	-
#Deleted in new
chr17	81327759	81327941	ENSG00000185332.6|TMEM105|pc|chr17:81327759:81327941:-	0	-
#Partially deleted in new
chr17	81330143	81330415	ENSG00000185332.6|TMEM105|pc|chr17:81330143:81330415:-	0	-
#Partially deleted in new
chr17	81330143	81330429	ENSG00000185332.6|TMEM105|pc|chr17:81330143:81330429:-	0	-
#Partially deleted in new
chr17	81330143	81330651	ENSG00000185332.6|TMEM105|pc|chr17:81330143:81330651:-	0	-
#Partially deleted in new
chr17	81330143	81330674	ENSG00000185332.6|TMEM105|pc|chr17:81330143:81330674:-	0	-
#Deleted in new
chr17	81362271	81362321	ENSG00000263154.1|AC110285.3|lncRNA|chr17:81362271:81362321:+	0	+
#Deleted in new
chr17	81371516	81371651	ENSG00000263154.1|AC110285.3|lncRNA|chr17:81371516:81371651:+	0	+
#Deleted in new
chr17	81376000	81376173	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81376000:81376173:-	0	-
#Deleted in new
chr17	81376018	81376173	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81376018:81376173:-	0	-
#Deleted in new
chr17	81376021	81376173	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81376021:81376173:-	0	-
#Deleted in new
chr17	81376091	81376173	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81376091:81376173:-	0	-
#Deleted in new
chr17	81379597	81379881	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81379597:81379881:-	0	-
#Deleted in new
chr17	81379666	81379881	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81379666:81379881:-	0	-
#Deleted in new
chr17	81379721	81379881	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81379721:81379881:-	0	-
#Deleted in new
chr17	81379721	81379923	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81379721:81379923:-	0	-
#Deleted in new
chr17	81380484	81380584	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81380484:81380584:-	0	-
#Deleted in new
chr17	81381876	81381940	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81381876:81381940:-	0	-
#Deleted in new
chr17	81384945	81385032	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81384945:81385032:-	0	-
#Deleted in new
chr17	81384945	81385129	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81384945:81385129:-	0	-
#Deleted in new
chr17	81385128	81385221	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81385128:81385221:-	0	-
#Partially deleted in new
chr17	81385128	81385246	ENSG00000262223.6|AC110285.1|lncRNA|chr17:81385128:81385246:-	0	-
#Deleted in new
chr17	8153929	8153980	ENSG00000179094.15|PER1|pc|chr17:8153929:8153980:-	0	-
#Deleted in new
chr17	81553073	81553109	ENSG00000185504.16|FAAP100|pc|chr17:81553073:81553109:-	0	-
#Deleted in new
chr17	81553073	81553127	ENSG00000185504.16|FAAP100|pc|chr17:81553073:81553127:-	0	-
#Deleted in new
chr17	81553444	81553961	ENSG00000185504.16|FAAP100|pc|chr17:81553444:81553961:-	0	-
#Deleted in new
chr17	81560561	81560629	ENSG00000182446.13|NPLOC4|pc|chr17:81560561:81560629:-	0	-
#Deleted in new
chr17	81560720	81560889	ENSG00000182446.13|NPLOC4|pc|chr17:81560720:81560889:-	0	-
#Partially deleted in new
chr17	81561765	81565607	ENSG00000182446.13|NPLOC4|pc|chr17:81561765:81565607:-	0	-
#Deleted in new
chr17	81563412	81563568	ENSG00000182446.13|NPLOC4|pc|chr17:81563412:81563568:-	0	-
#Deleted in new
chr17	81563920	81563979	ENSG00000182446.13|NPLOC4|pc|chr17:81563920:81563979:-	0	-
#Deleted in new
chr17	81564212	81564246	ENSG00000182446.13|NPLOC4|pc|chr17:81564212:81564246:-	0	-
#Partially deleted in new
chr17	81564908	81565607	ENSG00000182446.13|NPLOC4|pc|chr17:81564908:81565607:-	0	-
#Deleted in new
chr17	81566387	81566602	ENSG00000182446.13|NPLOC4|pc|chr17:81566387:81566602:-	0	-
#Deleted in new
chr17	81566470	81566635	ENSG00000182446.13|NPLOC4|pc|chr17:81566470:81566635:-	0	-
#Deleted in new
chr17	81567933	81568075	ENSG00000182446.13|NPLOC4|pc|chr17:81567933:81568075:-	0	-
#Deleted in new
chr17	81567953	81568075	ENSG00000182446.13|NPLOC4|pc|chr17:81567953:81568075:-	0	-
#Deleted in new
chr17	81588090	81588187	ENSG00000182446.13|NPLOC4|pc|chr17:81588090:81588187:-	0	-
#Deleted in new
chr17	81629863	81629875	ENSG00000182446.13|NPLOC4|pc|chr17:81629863:81629875:-	0	-
#Deleted in new
chr17	81637517	81639177	ENSG00000182612.10|TSPAN10|pc|chr17:81637517:81639177:+	0	+
#Deleted in new
chr17	81648429	81648465	ENSG00000182446.13|NPLOC4|pc|chr17:81648429:81648465:-	0	-
#Deleted in new
chr17	81663058	81663104	ENSG00000185527.11|PDE6G|pc|chr17:81663058:81663104:-	0	-
#Deleted in new
chr17	81663058	81663112	ENSG00000185527.11|PDE6G|pc|chr17:81663058:81663112:-	0	-
#Partially deleted in new
chr17	81672494	81673899	ENSG00000185298.12|CCDC137|pc|chr17:81672494:81673899:+	0	+
#Deleted in new
chr17	81672965	81673904	ENSG00000185298.12|CCDC137|pc|chr17:81672965:81673904:+	0	+
#Partially deleted in new
chr17	81697024	81697714	ENSG00000275902.1|AC139530.3|lncRNA|chr17:81697024:81697714:-	0	-
#Deleted in new
chr17	81702830	81703138	ENSG00000185359.12|HGS|pc|chr17:81702830:81703138:+	0	+
#Deleted in new
chr17	81826379	81826394	ENSG00000225663.7|MCRIP1|pc|chr17:81826379:81826394:-	0	-
#Deleted in new
chr17	81826379	81826515	ENSG00000225663.7|MCRIP1|pc|chr17:81826379:81826515:-	0	-
#Deleted in new
chr17	8182661	8182812	ENSG00000266824.1|AC129492.4|lncRNA|chr17:8182661:8182812:+	0	+
#Deleted in new
chr17	81833237	81833242	ENSG00000225663.7|MCRIP1|pc|chr17:81833237:81833242:-	0	-
#Partially deleted in new
chr17	81847242	81847848	ENSG00000185624.14|P4HB|pc|chr17:81847242:81847848:-	0	-
#Deleted in new
chr17	81862777	81863102	ENSG00000278876.1|AC145207.9|lncRNA|chr17:81862777:81863102:+	0	+
#Partially deleted in new
chr17	81878424	81881106	ENSG00000263731.1|AC145207.5|lncRNA|chr17:81878424:81881106:-	0	-
#Partially deleted in new
chr17	81878666	81879353	ENSG00000263859.1|AC145207.6|lncRNA|chr17:81878666:81879353:+	0	+
#Deleted in new
chr17	81879462	81879557	ENSG00000263859.1|AC145207.6|lncRNA|chr17:81879462:81879557:+	0	+
#Deleted in new
chr17	81893103	81893187	ENSG00000141552.17|ANAPC11|pc|chr17:81893103:81893187:+	0	+
#Deleted in new
chr17	81893551	81893614	ENSG00000141552.17|ANAPC11|pc|chr17:81893551:81893614:+	0	+
#Deleted in new
chr17	81893554	81893614	ENSG00000141552.17|ANAPC11|pc|chr17:81893554:81893614:+	0	+
#Deleted in new
chr17	81894762	81894864	ENSG00000141552.17|ANAPC11|pc|chr17:81894762:81894864:+	0	+
#Deleted in new
chr17	81899241	81899327	ENSG00000141552.17|ANAPC11|pc|chr17:81899241:81899327:+	0	+
#Deleted in new
chr17	81910900	81911015	ENSG00000185813.10|PCYT2|pc|chr17:81910900:81911015:-	0	-
#Deleted in new
chr17	81910900	81911128	ENSG00000185813.10|PCYT2|pc|chr17:81910900:81911128:-	0	-
#Deleted in new
chr17	81910900	81911175	ENSG00000185813.10|PCYT2|pc|chr17:81910900:81911175:-	0	-
#Partially deleted in new
chr17	81910900	81911267	ENSG00000185813.10|PCYT2|pc|chr17:81910900:81911267:-	0	-
#Partially deleted in new
chr17	81927828	81928445	ENSG00000265688.1|MAFG-AS1|lncRNA|chr17:81927828:81928445:+	0	+
#Deleted in new
chr17	81928400	81928445	ENSG00000265688.1|MAFG-AS1|lncRNA|chr17:81928400:81928445:+	0	+
#Deleted in new
chr17	81929475	81929859	ENSG00000265688.1|MAFG-AS1|lncRNA|chr17:81929475:81929859:+	0	+
#Deleted in new
chr17	81929475	81930753	ENSG00000265688.1|MAFG-AS1|lncRNA|chr17:81929475:81930753:+	0	+
#Deleted in new
chr17	81929977	81930517	ENSG00000265688.1|MAFG-AS1|lncRNA|chr17:81929977:81930517:+	0	+
#Deleted in new
chr17	81932383	81932963	ENSG00000183010.16|PYCR1|pc|chr17:81932383:81932963:-	0	-
#Partially deleted in new
chr17	81932383	81933376	ENSG00000183010.16|PYCR1|pc|chr17:81932383:81933376:-	0	-
#Deleted in new
chr17	81932397	81932784	ENSG00000263585.1|AC145207.4|lncRNA|chr17:81932397:81932784:+	0	+
#Deleted in new
chr17	81932995	81933058	ENSG00000263585.1|AC145207.4|lncRNA|chr17:81932995:81933058:+	0	+
#Deleted in new
chr17	81937527	81937662	ENSG00000183010.16|PYCR1|pc|chr17:81937527:81937662:-	0	-
#Deleted in new
chr17	81942295	81942373	ENSG00000185105.5|MYADML2|pc|chr17:81942295:81942373:-	0	-
#Deleted in new
chr17	81942295	81942412	ENSG00000183010.16|PYCR1|pc|chr17:81942295:81942412:-	0	-
#Deleted in new
chr17	81947058	81947233	ENSG00000185105.5|MYADML2|pc|chr17:81947058:81947233:-	0	-
#Deleted in new
chr17	81947137	81947601	ENSG00000235296.1|AC145207.1|lncRNA|chr17:81947137:81947601:+	0	+
#Partially deleted in new
chr17	81965631	81966589	ENSG00000264735.1|AC145207.7|lncRNA|chr17:81965631:81966589:-	0	-
#Deleted in new
chr17	81976806	81976979	ENSG00000169696.15|ASPSCR1|pc|chr17:81976806:81976979:+	0	+
#Partially deleted in new
chr17	81977898	81978804	ENSG00000169696.15|ASPSCR1|pc|chr17:81977898:81978804:+	0	+
#Partially deleted in new
chr17	81978185	81978339	ENSG00000169696.15|ASPSCR1|pc|chr17:81978185:81978339:+	0	+
#Deleted in new
chr17	82009931	82010052	ENSG00000169696.15|ASPSCR1|pc|chr17:82009931:82010052:+	0	+
#Deleted in new
chr17	82015074	82015356	ENSG00000169696.15|ASPSCR1|pc|chr17:82015074:82015356:+	0	+
#Deleted in new
chr17	82015213	82015356	ENSG00000169696.15|ASPSCR1|pc|chr17:82015213:82015356:+	0	+
#Deleted in new
chr17	82016193	82016308	ENSG00000169696.15|ASPSCR1|pc|chr17:82016193:82016308:+	0	+
#Deleted in new
chr17	82022638	82022821	ENSG00000169689.14|CENPX|pc|chr17:82022638:82022821:-	0	-
#Deleted in new
chr17	82022638	82022849	ENSG00000169689.14|CENPX|pc|chr17:82022638:82022849:-	0	-
#Deleted in new
chr17	82022638	82022852	ENSG00000169689.14|CENPX|pc|chr17:82022638:82022852:-	0	-
#Deleted in new
chr17	82022638	82022873	ENSG00000169689.14|CENPX|pc|chr17:82022638:82022873:-	0	-
#Deleted in new
chr17	82022825	82022858	ENSG00000169689.14|CENPX|pc|chr17:82022825:82022858:-	0	-
#Deleted in new
chr17	82022825	82022879	ENSG00000169689.14|CENPX|pc|chr17:82022825:82022879:-	0	-
#Deleted in new
chr17	82022825	82022884	ENSG00000169689.14|CENPX|pc|chr17:82022825:82022884:-	0	-
#Deleted in new
chr17	82022825	82022892	ENSG00000169689.14|CENPX|pc|chr17:82022825:82022892:-	0	-
#Deleted in new
chr17	82022825	82022918	ENSG00000169689.14|CENPX|pc|chr17:82022825:82022918:-	0	-
#Partially deleted in new
chr17	82037904	82038413	ENSG00000264569.1|AC137723.1|lncRNA|chr17:82037904:82038413:+	0	+
#Deleted in new
chr17	82038030	82038268	ENSG00000264569.1|AC137723.1|lncRNA|chr17:82038030:82038268:+	0	+
#Deleted in new
chr17	82039180	82039246	ENSG00000264569.1|AC137723.1|lncRNA|chr17:82039180:82039246:+	0	+
#Deleted in new
chr17	82039180	82039380	ENSG00000264569.1|AC137723.1|lncRNA|chr17:82039180:82039380:+	0	+
#Partially deleted in new
chr17	82047901	82048807	ENSG00000169733.11|RFNG|pc|chr17:82047901:82048807:-	0	-
#Partially deleted in new
chr17	82047901	82049116	ENSG00000169733.11|RFNG|pc|chr17:82047901:82049116:-	0	-
#Partially deleted in new
chr17	82047905	82048807	ENSG00000169733.11|RFNG|pc|chr17:82047905:82048807:-	0	-
#Partially deleted in new
chr17	82048444	82048807	ENSG00000169733.11|RFNG|pc|chr17:82048444:82048807:-	0	-
#Partially deleted in new
chr17	82048552	82048807	ENSG00000169733.11|RFNG|pc|chr17:82048552:82048807:-	0	-
#Deleted in new
chr17	82096786	82096841	ENSG00000169710.8|FASN|pc|chr17:82096786:82096841:-	0	-
#Deleted in new
chr17	82096802	82096876	ENSG00000169710.8|FASN|pc|chr17:82096802:82096876:-	0	-
#Partially deleted in new
chr17	82104794	82105113	ENSG00000176155.18|CCDC57|pc|chr17:82104794:82105113:-	0	-
#Deleted in new
chr17	82106269	82106375	ENSG00000176155.18|CCDC57|pc|chr17:82106269:82106375:-	0	-
#Partially deleted in new
chr17	82106269	82106587	ENSG00000176155.18|CCDC57|pc|chr17:82106269:82106587:-	0	-
#Partially deleted in new
chr17	82111985	82113765	ENSG00000176155.18|CCDC57|pc|chr17:82111985:82113765:-	0	-
#Deleted in new
chr17	82135111	82135394	ENSG00000176155.18|CCDC57|pc|chr17:82135111:82135394:-	0	-
#Deleted in new
chr17	82145850	82145853	ENSG00000176155.18|CCDC57|pc|chr17:82145850:82145853:-	0	-
#Partially deleted in new
chr17	82153609	82157948	ENSG00000176155.18|CCDC57|pc|chr17:82153609:82157948:-	0	-
#Deleted in new
chr17	82154737	82154815	ENSG00000265678.1|AC129510.1|lncRNA|chr17:82154737:82154815:+	0	+
#Deleted in new
chr17	82155916	82156283	ENSG00000176155.18|CCDC57|pc|chr17:82155916:82156283:-	0	-
#Deleted in new
chr17	82160055	82160338	ENSG00000266654.1|AC129510.2|lncRNA|chr17:82160055:82160338:+	0	+
#Deleted in new
chr17	82160390	82160452	ENSG00000266654.1|AC129510.2|lncRNA|chr17:82160390:82160452:+	0	+
#Deleted in new
chr17	82175565	82175664	ENSG00000176155.18|CCDC57|pc|chr17:82175565:82175664:-	0	-
#Deleted in new
chr17	82184957	82185172	ENSG00000176155.18|CCDC57|pc|chr17:82184957:82185172:-	0	-
#Deleted in new
chr17	8220641	8221509	ENSG00000178977.3|LINC00324|lncRNA|chr17:8220641:8221509:-	0	-
#Deleted in new
chr17	82207562	82208048	ENSG00000176155.18|CCDC57|pc|chr17:82207562:82208048:-	0	-
#Deleted in new
chr17	82207730	82208048	ENSG00000176155.18|CCDC57|pc|chr17:82207730:82208048:-	0	-
#Deleted in new
chr17	82212779	82212830	ENSG00000176155.18|CCDC57|pc|chr17:82212779:82212830:-	0	-
#Deleted in new
chr17	82212784	82212813	ENSG00000176155.18|CCDC57|pc|chr17:82212784:82212813:-	0	-
#Deleted in new
chr17	82214226	82215597	ENSG00000264548.1|AC132872.2|lncRNA|chr17:82214226:82215597:+	0	+
#Partially deleted in new
chr17	82216355	82217352	ENSG00000264548.1|AC132872.2|lncRNA|chr17:82216355:82217352:+	0	+
#Partially deleted in new
chr17	82232231	82232359	ENSG00000141526.16|SLC16A3|pc|chr17:82232231:82232359:+	0	+
#Deleted in new
chr17	82234898	82235000	ENSG00000141526.16|SLC16A3|pc|chr17:82234898:82235000:+	0	+
#Deleted in new
chr17	82235052	82235229	ENSG00000141526.16|SLC16A3|pc|chr17:82235052:82235229:+	0	+
#Deleted in new
chr17	8223811	8224043	ENSG00000178977.3|LINC00324|lncRNA|chr17:8223811:8224043:-	0	-
#Partially deleted in new
chr17	82249066	82251232	ENSG00000280407.2|AC132872.4|lncRNA|chr17:82249066:82251232:+	0	+
#Partially deleted in new
chr17	82249066	82251844	ENSG00000280407.2|AC132872.4|lncRNA|chr17:82249066:82251844:+	0	+
#Partially deleted in new
chr17	82249577	82250179	ENSG00000141551.14|CSNK1D|pc|chr17:82249577:82250179:-	0	-
#Deleted in new
chr17	82249697	82249835	ENSG00000141551.14|CSNK1D|pc|chr17:82249697:82249835:-	0	-
#Deleted in new
chr17	82249697	82250179	ENSG00000141551.14|CSNK1D|pc|chr17:82249697:82250179:-	0	-
#Duplicated in new
chr17	82253015	82254679	ENSG00000141551.14|CSNK1D|pc|chr17:82253015:82254679:-	0	-
#Partially deleted in new
chr17	82260898	82261129	ENSG00000141526.16|SLC16A3|pc|chr17:82260898:82261129:+	0	+
#Partially deleted in new
chr17	82265299	82265796	ENSG00000141551.14|CSNK1D|pc|chr17:82265299:82265796:-	0	-
#Partially deleted in new
chr17	82266707	82266894	ENSG00000141551.14|CSNK1D|pc|chr17:82266707:82266894:-	0	-
#Partially deleted in new
chr17	82266724	82266891	ENSG00000141551.14|CSNK1D|pc|chr17:82266724:82266891:-	0	-
#Partially deleted in new
chr17	82266724	82266894	ENSG00000141551.14|CSNK1D|pc|chr17:82266724:82266894:-	0	-
#Deleted in new
chr17	82266982	82267032	ENSG00000141551.14|CSNK1D|pc|chr17:82266982:82267032:-	0	-
#Partially deleted in new
chr17	82272069	82272316	ENSG00000141551.14|CSNK1D|pc|chr17:82272069:82272316:-	0	-
#Deleted in new
chr17	82290045	82291563	ENSG00000265692.1|LINC01970|lncRNA|chr17:82290045:82291563:-	0	-
#Deleted in new
chr17	82292522	82292814	ENSG00000265692.1|LINC01970|lncRNA|chr17:82292522:82292814:-	0	-
#Deleted in new
chr17	82293715	82294910	ENSG00000260563.3|AC132872.1|lncRNA|chr17:82293715:82294910:+	0	+
#Deleted in new
chr17	82321023	82322370	ENSG00000141574.7|SECTM1|pc|chr17:82321023:82322370:-	0	-
#Deleted in new
chr17	82321886	82322370	ENSG00000141574.7|SECTM1|pc|chr17:82321886:82322370:-	0	-
#Deleted in new
chr17	82322114	82322370	ENSG00000141574.7|SECTM1|pc|chr17:82322114:82322370:-	0	-
#Deleted in new
chr17	82322877	82322905	ENSG00000141574.7|SECTM1|pc|chr17:82322877:82322905:-	0	-
#Deleted in new
chr17	82322877	82323011	ENSG00000141574.7|SECTM1|pc|chr17:82322877:82323011:-	0	-
#Deleted in new
chr17	82322878	82323011	ENSG00000141574.7|SECTM1|pc|chr17:82322878:82323011:-	0	-
#Deleted in new
chr17	82322964	82323011	ENSG00000141574.7|SECTM1|pc|chr17:82322964:82323011:-	0	-
#Deleted in new
chr17	82323256	82323316	ENSG00000141574.7|SECTM1|pc|chr17:82323256:82323316:-	0	-
#Deleted in new
chr17	82323279	82323316	ENSG00000141574.7|SECTM1|pc|chr17:82323279:82323316:-	0	-
#Deleted in new
chr17	82328129	82328506	ENSG00000141574.7|SECTM1|pc|chr17:82328129:82328506:-	0	-
#Deleted in new
chr17	82329258	82329466	ENSG00000141574.7|SECTM1|pc|chr17:82329258:82329466:-	0	-
#Deleted in new
chr17	82333694	82333769	ENSG00000141574.7|SECTM1|pc|chr17:82333694:82333769:-	0	-
#Deleted in new
chr17	82333699	82333748	ENSG00000141574.7|SECTM1|pc|chr17:82333699:82333748:-	0	-
#Deleted in new
chr17	82333699	82333762	ENSG00000141574.7|SECTM1|pc|chr17:82333699:82333762:-	0	-
#Deleted in new
chr17	82333699	82333763	ENSG00000141574.7|SECTM1|pc|chr17:82333699:82333763:-	0	-
#Deleted in new
chr17	82333699	82333766	ENSG00000141574.7|SECTM1|pc|chr17:82333699:82333766:-	0	-
#Deleted in new
chr17	82333699	82333998	ENSG00000141574.7|SECTM1|pc|chr17:82333699:82333998:-	0	-
#Deleted in new
chr17	82333821	82334074	ENSG00000141574.7|SECTM1|pc|chr17:82333821:82334074:-	0	-
#Deleted in new
chr17	82359246	82359285	ENSG00000182459.4|TEX19|pc|chr17:82359246:82359285:+	0	+
#Deleted in new
chr17	82381109	82381342	ENSG00000260011.2|AC132938.1|lncRNA|chr17:82381109:82381342:-	0	-
#Deleted in new
chr17	82382563	82382690	ENSG00000260011.2|AC132938.1|lncRNA|chr17:82382563:82382690:-	0	-
#Split in new
chr17	82389222	82392534	ENSG00000181396.12|OGFOD3|pc|chr17:82389222:82392534:-	0	-
#Split in new
chr17	82390115	82393911	ENSG00000181396.12|OGFOD3|pc|chr17:82390115:82393911:-	0	-
#Deleted in new
chr17	82391666	82391842	ENSG00000181396.12|OGFOD3|pc|chr17:82391666:82391842:-	0	-
#Deleted in new
chr17	82391941	82392105	ENSG00000181396.12|OGFOD3|pc|chr17:82391941:82392105:-	0	-
#Partially deleted in new
chr17	82392645	82393217	ENSG00000181396.12|OGFOD3|pc|chr17:82392645:82393217:-	0	-
#Deleted in new
chr17	82394330	82394543	ENSG00000181396.12|OGFOD3|pc|chr17:82394330:82394543:-	0	-
#Deleted in new
chr17	82396544	82396851	ENSG00000181396.12|OGFOD3|pc|chr17:82396544:82396851:-	0	-
#Deleted in new
chr17	82396596	82396826	ENSG00000181396.12|OGFOD3|pc|chr17:82396596:82396826:-	0	-
#Partially deleted in new
chr17	82400702	82401382	ENSG00000264812.1|AC132938.2|lncRNA|chr17:82400702:82401382:-	0	-
#Duplicated in new
chr17	82403894	82403988	ENSG00000181396.12|OGFOD3|pc|chr17:82403894:82403988:-	0	-
#Deleted in new
chr17	82423309	82423599	ENSG00000169660.15|HEXDC|pc|chr17:82423309:82423599:+	0	+
#Deleted in new
chr17	82425497	82427310	ENSG00000279066.1|AC132938.5|lncRNA|chr17:82425497:82427310:+	0	+
#Deleted in new
chr17	82428029	82428127	ENSG00000169660.15|HEXDC|pc|chr17:82428029:82428127:+	0	+
#Partially deleted in new
chr17	82447850	82447927	ENSG00000178927.17|C17orf62|pc|chr17:82447850:82447927:-	0	-
#Deleted in new
chr17	82449430	82449480	ENSG00000178927.17|C17orf62|pc|chr17:82449430:82449480:-	0	-
#Deleted in new
chr17	82449430	82449605	ENSG00000178927.17|C17orf62|pc|chr17:82449430:82449605:-	0	-
#Deleted in new
chr17	82449430	82449726	ENSG00000178927.17|C17orf62|pc|chr17:82449430:82449726:-	0	-
#Deleted in new
chr17	82449430	82449956	ENSG00000178927.17|C17orf62|pc|chr17:82449430:82449956:-	0	-
#Deleted in new
chr17	82449431	82449956	ENSG00000178927.17|C17orf62|pc|chr17:82449431:82449956:-	0	-
#Deleted in new
chr17	82449714	82450254	ENSG00000178927.17|C17orf62|pc|chr17:82449714:82450254:-	0	-
#Deleted in new
chr17	82449754	82450278	ENSG00000178927.17|C17orf62|pc|chr17:82449754:82450278:-	0	-
#Deleted in new
chr17	82449900	82450254	ENSG00000178927.17|C17orf62|pc|chr17:82449900:82450254:-	0	-
#Deleted in new
chr17	82450198	82450254	ENSG00000178927.17|C17orf62|pc|chr17:82450198:82450254:-	0	-
#Deleted in new
chr17	82450479	82450670	ENSG00000178927.17|C17orf62|pc|chr17:82450479:82450670:-	0	-
#Deleted in new
chr17	82450479	82450709	ENSG00000178927.17|C17orf62|pc|chr17:82450479:82450709:-	0	-
#Deleted in new
chr17	82450479	82450770	ENSG00000178927.17|C17orf62|pc|chr17:82450479:82450770:-	0	-
#Deleted in new
chr17	82450532	82450708	ENSG00000178927.17|C17orf62|pc|chr17:82450532:82450708:-	0	-
#Deleted in new
chr17	82450699	82450717	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450717:-	0	-
#Deleted in new
chr17	82450699	82450723	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450723:-	0	-
#Deleted in new
chr17	82450699	82450728	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450728:-	0	-
#Deleted in new
chr17	82450699	82450734	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450734:-	0	-
#Deleted in new
chr17	82450699	82450737	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450737:-	0	-
#Deleted in new
chr17	82450699	82450741	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450741:-	0	-
#Deleted in new
chr17	82450699	82450742	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450742:-	0	-
#Deleted in new
chr17	82450699	82450743	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450743:-	0	-
#Deleted in new
chr17	82450699	82450749	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450749:-	0	-
#Deleted in new
chr17	82450699	82450750	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450750:-	0	-
#Deleted in new
chr17	82450699	82450768	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450768:-	0	-
#Deleted in new
chr17	82450699	82450770	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450770:-	0	-
#Deleted in new
chr17	82450699	82450774	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450774:-	0	-
#Deleted in new
chr17	82450699	82450775	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450775:-	0	-
#Deleted in new
chr17	82450699	82450776	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450776:-	0	-
#Deleted in new
chr17	82450699	82450829	ENSG00000178927.17|C17orf62|pc|chr17:82450699:82450829:-	0	-
#Deleted in new
chr17	82454272	82454413	ENSG00000265458.1|AC132938.3|lncRNA|chr17:82454272:82454413:-	0	-
#Deleted in new
chr17	82457365	82457548	ENSG00000265458.1|AC132938.3|lncRNA|chr17:82457365:82457548:-	0	-
#Deleted in new
chr17	82457437	82457548	ENSG00000265458.1|AC132938.3|lncRNA|chr17:82457437:82457548:-	0	-
#Deleted in new
chr17	82457672	82457699	ENSG00000265458.1|AC132938.3|lncRNA|chr17:82457672:82457699:-	0	-
#Partially deleted in new
chr17	82459274	82459448	ENSG00000141562.17|NARF|pc|chr17:82459274:82459448:+	0	+
#Partially deleted in new
chr17	82459991	82460705	ENSG00000141562.17|NARF|pc|chr17:82459991:82460705:+	0	+
#Deleted in new
chr17	82460970	82461014	ENSG00000141562.17|NARF|pc|chr17:82460970:82461014:+	0	+
#Deleted in new
chr17	82476596	82477138	ENSG00000266445.1|AC124287.1|lncRNA|chr17:82476596:82477138:-	0	-
#Deleted in new
chr17	82477628	82477924	ENSG00000266445.1|AC124287.1|lncRNA|chr17:82477628:82477924:-	0	-
#Deleted in new
chr17	82478570	82478667	ENSG00000141562.17|NARF|pc|chr17:82478570:82478667:+	0	+
#Deleted in new
chr17	82480406	82480544	ENSG00000141562.17|NARF|pc|chr17:82480406:82480544:+	0	+
#Partially deleted in new
chr17	82480467	82481211	ENSG00000141562.17|NARF|pc|chr17:82480467:82481211:+	0	+
#Deleted in new
chr17	82481812	82481835	ENSG00000141562.17|NARF|pc|chr17:82481812:82481835:+	0	+
#Deleted in new
chr17	82483173	82483304	ENSG00000141562.17|NARF|pc|chr17:82483173:82483304:+	0	+
#Deleted in new
chr17	82483186	82483304	ENSG00000141562.17|NARF|pc|chr17:82483186:82483304:+	0	+
#Deleted in new
chr17	82483304	82483388	ENSG00000266236.1|NARF-IT1|lncRNA|chr17:82483304:82483388:+	0	+
#Partially deleted in new
chr17	82487915	82490537	ENSG00000141562.17|NARF|pc|chr17:82487915:82490537:+	0	+
#Deleted in new
chr1	78250183	78250373	ENSG00000237413.5|MGC27382|lncRNA|chr1:78250183:78250373:+	0	+
#Deleted in new
chr1	78250183	78251010	ENSG00000237413.5|MGC27382|lncRNA|chr1:78250183:78251010:+	0	+
#Deleted in new
chr1	78251493	78251877	ENSG00000237413.5|MGC27382|lncRNA|chr1:78251493:78251877:+	0	+
#Deleted in new
chr17	82559339	82559480	ENSG00000141568.20|FOXK2|pc|chr17:82559339:82559480:+	0	+
#Deleted in new
chr17	82559363	82559447	ENSG00000141568.20|FOXK2|pc|chr17:82559363:82559447:+	0	+
#Partially deleted in new
chr17	82578022	82578616	ENSG00000262652.1|AC124283.3|lncRNA|chr17:82578022:82578616:+	0	+
#Deleted in new
chr17	82585251	82585271	ENSG00000141568.20|FOXK2|pc|chr17:82585251:82585271:+	0	+
#Partially deleted in new
chr17	82588255	82588411	ENSG00000262147.1|AC124283.2|lncRNA|chr17:82588255:82588411:-	0	-
#Deleted in new
chr17	82593399	82593744	ENSG00000141568.20|FOXK2|pc|chr17:82593399:82593744:+	0	+
#Deleted in new
chr17	82593421	82593954	ENSG00000141568.20|FOXK2|pc|chr17:82593421:82593954:+	0	+
#Deleted in new
chr17	82595781	82596191	ENSG00000141568.20|FOXK2|pc|chr17:82595781:82596191:+	0	+
#Deleted in new
chr17	82600091	82600244	ENSG00000141568.20|FOXK2|pc|chr17:82600091:82600244:+	0	+
#Deleted in new
chr17	8262459	8262499	ENSG00000178921.13|PFAS|pc|chr17:8262459:8262499:+	0	+
#Partially deleted in new
chr17	82625586	82625959	ENSG00000141580.15|WDR45B|pc|chr17:82625586:82625959:-	0	-
#Partially deleted in new
chr17	82629530	82629628	ENSG00000141580.15|WDR45B|pc|chr17:82629530:82629628:-	0	-
#Deleted in new
chr17	82636511	82636583	ENSG00000141580.15|WDR45B|pc|chr17:82636511:82636583:-	0	-
#Deleted in new
chr17	82648848	82650657	ENSG00000279613.1|AC124283.5|lncRNA|chr17:82648848:82650657:+	0	+
#Deleted in new
chr17	82655036	82655667	ENSG00000141542.10|RAB40B|pc|chr17:82655036:82655667:-	0	-
#Deleted in new
chr17	82656492	82656881	ENSG00000141542.10|RAB40B|pc|chr17:82656492:82656881:-	0	-
#Deleted in new
chr17	82713907	82714116	ENSG00000263063.1|AC024361.2|lncRNA|chr17:82713907:82714116:-	0	-
#Deleted in new
chr17	82715566	82716255	ENSG00000263063.1|AC024361.2|lncRNA|chr17:82715566:82716255:-	0	-
#Deleted in new
chr17	82718443	82718571	ENSG00000141560.14|FN3KRP|pc|chr17:82718443:82718571:+	0	+
#Deleted in new
chr17	82729163	82729469	ENSG00000263321.1|AC024361.3|lncRNA|chr17:82729163:82729469:-	0	-
#Deleted in new
chr17	82729323	82729480	ENSG00000141560.14|FN3KRP|pc|chr17:82729323:82729480:+	0	+
#Deleted in new
chr17	82729913	82730328	ENSG00000141560.14|FN3KRP|pc|chr17:82729913:82730328:+	0	+
#Deleted in new
chr17	82734116	82734143	ENSG00000263321.1|AC024361.3|lncRNA|chr17:82734116:82734143:-	0	-
#Partially deleted in new
chr17	82737703	82737933	ENSG00000167363.13|FN3K|pc|chr17:82737703:82737933:+	0	+
#Deleted in new
chr17	82745067	82745709	ENSG00000262410.1|AC024361.1|lncRNA|chr17:82745067:82745709:+	0	+
#Partially deleted in new
chr17	82748854	82749895	ENSG00000167363.13|FN3K|pc|chr17:82748854:82749895:+	0	+
#Deleted in new
chr17	8277762	8278436	ENSG00000269947.1|AC135178.5|lncRNA|chr17:8277762:8278436:+	0	+
#Deleted in new
chr17	82795485	82795759	ENSG00000263098.1|AC068014.1|lncRNA|chr17:82795485:82795759:-	0	-
#Deleted in new
chr17	82795956	82796095	ENSG00000263098.1|AC068014.1|lncRNA|chr17:82795956:82796095:-	0	-
#Deleted in new
chr17	82858518	82858667	ENSG00000141556.20|TBCD|pc|chr17:82858518:82858667:+	0	+
#Deleted in new
chr17	82858595	82858667	ENSG00000141556.20|TBCD|pc|chr17:82858595:82858667:+	0	+
#Deleted in new
chr17	82864290	82864427	ENSG00000141556.20|TBCD|pc|chr17:82864290:82864427:+	0	+
#Deleted in new
chr17	8288168	8288432	ENSG00000125434.10|SLC25A35|pc|chr17:8288168:8288432:-	0	-
#Deleted in new
chr17	82884800	82884936	ENSG00000141556.20|TBCD|pc|chr17:82884800:82884936:+	0	+
#Deleted in new
chr17	82886083	82886284	ENSG00000141556.20|TBCD|pc|chr17:82886083:82886284:+	0	+
#Deleted in new
chr17	82895824	82895990	ENSG00000141556.20|TBCD|pc|chr17:82895824:82895990:+	0	+
#Deleted in new
chr17	82913010	82913149	ENSG00000141556.20|TBCD|pc|chr17:82913010:82913149:+	0	+
#Deleted in new
chr17	82913339	82914153	ENSG00000141556.20|TBCD|pc|chr17:82913339:82914153:+	0	+
#Deleted in new
chr17	82918281	82918785	ENSG00000262663.1|AC087222.1|lncRNA|chr17:82918281:82918785:+	0	+
#Deleted in new
chr1	78293078	78293277	ENSG00000237413.5|MGC27382|lncRNA|chr1:78293078:78293277:+	0	+
#Deleted in new
chr17	82931948	82932139	ENSG00000141556.20|TBCD|pc|chr17:82931948:82932139:+	0	+
#Deleted in new
chr1	78293590	78293890	ENSG00000237413.5|MGC27382|lncRNA|chr1:78293590:78293890:+	0	+
#Partially deleted in new
chr17	82937270	82937847	ENSG00000141556.20|TBCD|pc|chr17:82937270:82937847:+	0	+
#Deleted in new
chr17	82937569	82937959	ENSG00000141556.20|TBCD|pc|chr17:82937569:82937959:+	0	+
#Deleted in new
chr17	82937845	82937959	ENSG00000141556.20|TBCD|pc|chr17:82937845:82937959:+	0	+
#Partially deleted in new
chr17	82942448	82945922	ENSG00000141556.20|TBCD|pc|chr17:82942448:82945922:+	0	+
#Deleted in new
chr17	82943790	82944049	ENSG00000175711.8|B3GNTL1|pc|chr17:82943790:82944049:-	0	-
#Deleted in new
chr17	82943795	82944049	ENSG00000175711.8|B3GNTL1|pc|chr17:82943795:82944049:-	0	-
#Deleted in new
chr17	82943821	82944049	ENSG00000175711.8|B3GNTL1|pc|chr17:82943821:82944049:-	0	-
#Partially deleted in new
chr17	82946878	82949948	ENSG00000175711.8|B3GNTL1|pc|chr17:82946878:82949948:-	0	-
#Deleted in new
chr17	82960358	82960486	ENSG00000175711.8|B3GNTL1|pc|chr17:82960358:82960486:-	0	-
#Deleted in new
chr17	82960375	82960486	ENSG00000175711.8|B3GNTL1|pc|chr17:82960375:82960486:-	0	-
#Deleted in new
chr17	82978524	82978599	ENSG00000262339.5|AC130371.1|lncRNA|chr17:82978524:82978599:+	0	+
#Deleted in new
chr17	82978719	82978824	ENSG00000262339.5|AC130371.1|lncRNA|chr17:82978719:82978824:+	0	+
#Deleted in new
chr17	82978720	82978824	ENSG00000262339.5|AC130371.1|lncRNA|chr17:82978720:82978824:+	0	+
#Deleted in new
chr17	82979355	82979402	ENSG00000262339.5|AC130371.1|lncRNA|chr17:82979355:82979402:+	0	+
#Deleted in new
chr17	82981081	82981202	ENSG00000262339.5|AC130371.1|lncRNA|chr17:82981081:82981202:+	0	+
#Deleted in new
chr17	82981458	82981508	ENSG00000262339.5|AC130371.1|lncRNA|chr17:82981458:82981508:+	0	+
#Deleted in new
chr17	82981458	82981734	ENSG00000262339.5|AC130371.1|lncRNA|chr17:82981458:82981734:+	0	+
#Deleted in new
chr17	82981458	82981738	ENSG00000262339.5|AC130371.1|lncRNA|chr17:82981458:82981738:+	0	+
#Partially deleted in new
chr1	7829833	7830161	ENSG00000049246.14|PER3|pc|chr1:7829833:7830161:+	0	+
#Partially deleted in new
chr1	7829836	7830161	ENSG00000049246.14|PER3|pc|chr1:7829836:7830161:+	0	+
#Deleted in new
chr1	7830005	7830161	ENSG00000049246.14|PER3|pc|chr1:7830005:7830161:+	0	+
#Deleted in new
chr17	83005574	83005671	ENSG00000175711.8|B3GNTL1|pc|chr17:83005574:83005671:-	0	-
#Deleted in new
chr17	83005980	83006988	ENSG00000175711.8|B3GNTL1|pc|chr17:83005980:83006988:-	0	-
#Deleted in new
chr17	83030760	83030902	ENSG00000175711.8|B3GNTL1|pc|chr17:83030760:83030902:-	0	-
#Deleted in new
chr1	78303883	78303931	ENSG00000122420.9|PTGFR|pc|chr1:78303883:78303931:+	0	+
#Partially deleted in new
chr17	83048668	83049166	ENSG00000175711.8|B3GNTL1|pc|chr17:83048668:83049166:-	0	-
#Deleted in new
chr17	83049035	83049140	ENSG00000175711.8|B3GNTL1|pc|chr17:83049035:83049140:-	0	-
#Partially deleted in new
chr17	83132646	83136150	ENSG00000279143.1|AC139099.4|lncRNA|chr17:83132646:83136150:-	0	-
#Deleted in new
chr17	8313745	8314042	ENSG00000198844.10|ARHGEF15|pc|chr17:8313745:8314042:+	0	+
#Deleted in new
chr17	83144130	83144202	ENSG00000262898.1|AC139099.2|lncRNA|chr17:83144130:83144202:+	0	+
#Deleted in new
chr17	83144809	83145259	ENSG00000262898.1|AC139099.2|lncRNA|chr17:83144809:83145259:+	0	+
#Deleted in new
chr17	83211995	83212244	ENSG00000262952.1|AC139099.3|lncRNA|chr17:83211995:83212244:+	0	+
#Deleted in new
chr17	83212367	83212547	ENSG00000262952.1|AC139099.3|lncRNA|chr17:83212367:83212547:+	0	+
#Deleted in new
chr17	83220425	83220560	ENSG00000262952.1|AC139099.3|lncRNA|chr17:83220425:83220560:+	0	+
#Deleted in new
chr17	83220526	83221408	ENSG00000262094.1|AC139099.1|lncRNA|chr17:83220526:83221408:-	0	-
#Partially deleted in new
chr17	83220547	83222956	ENSG00000262094.1|AC139099.1|lncRNA|chr17:83220547:83222956:-	0	-
#Deleted in new
chr17	83220874	83221408	ENSG00000262094.1|AC139099.1|lncRNA|chr17:83220874:83221408:-	0	-
#Deleted in new
chr17	83220886	83220929	ENSG00000262952.1|AC139099.3|lncRNA|chr17:83220886:83220929:+	0	+
#Deleted in new
chr17	83220886	83221190	ENSG00000262952.1|AC139099.3|lncRNA|chr17:83220886:83221190:+	0	+
#Deleted in new
chr17	83221068	83221408	ENSG00000262094.1|AC139099.1|lncRNA|chr17:83221068:83221408:-	0	-
#Deleted in new
chr17	83227620	83227705	ENSG00000262094.1|AC139099.1|lncRNA|chr17:83227620:83227705:-	0	-
#Deleted in new
chr17	83227648	83227721	ENSG00000262094.1|AC139099.1|lncRNA|chr17:83227648:83227721:-	0	-
#Deleted in new
chr17	8337696	8337908	ENSG00000266279.1|AC135178.4|lncRNA|chr17:8337696:8337908:+	0	+
#Deleted in new
chr17	8338422	8338758	ENSG00000266279.1|AC135178.4|lncRNA|chr17:8338422:8338758:+	0	+
#Deleted in new
chr17	8367162	8367208	ENSG00000265749.5|AC135178.3|lncRNA|chr17:8367162:8367208:+	0	+
#Deleted in new
chr1	78368536	78368727	ENSG00000237413.5|MGC27382|lncRNA|chr1:78368536:78368727:+	0	+
#Deleted in new
chr1	78369282	78369464	ENSG00000237413.5|MGC27382|lncRNA|chr1:78369282:78369464:+	0	+
#Deleted in new
chr17	8373490	8373816	ENSG00000265749.5|AC135178.3|lncRNA|chr17:8373490:8373816:+	0	+
#Deleted in new
chr17	8377074	8377241	ENSG00000265749.5|AC135178.3|lncRNA|chr17:8377074:8377241:+	0	+
#Deleted in new
chr17	8380586	8380703	ENSG00000161970.12|RPL26|pc|chr17:8380586:8380703:-	0	-
#Deleted in new
chr17	8381044	8381328	ENSG00000265749.5|AC135178.3|lncRNA|chr17:8381044:8381328:+	0	+
#Deleted in new
chr17	8381997	8382090	ENSG00000161970.12|RPL26|pc|chr17:8381997:8382090:-	0	-
#Deleted in new
chr1	78398950	78399025	ENSG00000122420.9|PTGFR|pc|chr1:78398950:78399025:+	0	+
#Deleted in new
chr17	8431898	8432167	ENSG00000166579.15|NDEL1|pc|chr17:8431898:8432167:+	0	+
#Deleted in new
chr1	784369	784429	ENSG00000237491.8|AL669831.5|lncRNA|chr1:784369:784429:+	0	+
#Deleted in new
chr1	784369	784493	ENSG00000237491.8|AL669831.5|lncRNA|chr1:784369:784493:+	0	+
#Deleted in new
chr1	784369	784655	ENSG00000237491.8|AL669831.5|lncRNA|chr1:784369:784655:+	0	+
#Deleted in new
chr1	784369	784690	ENSG00000237491.8|AL669831.5|lncRNA|chr1:784369:784690:+	0	+
#Deleted in new
chr1	784369	784759	ENSG00000237491.8|AL669831.5|lncRNA|chr1:784369:784759:+	0	+
#Deleted in new
chr1	784369	784977	ENSG00000237491.8|AL669831.5|lncRNA|chr1:784369:784977:+	0	+
#Deleted in new
chr1	784395	784493	ENSG00000237491.8|AL669831.5|lncRNA|chr1:784395:784493:+	0	+
#Deleted in new
chr17	8444953	8445040	ENSG00000166579.15|NDEL1|pc|chr17:8444953:8445040:+	0	+
#Deleted in new
chr1	7846691	7846766	ENSG00000049247.13|UTS2|pc|chr1:7846691:7846766:-	0	-
#Deleted in new
chr1	78532212	78532353	ENSG00000122420.9|PTGFR|pc|chr1:78532212:78532353:+	0	+
#Deleted in new
chr1	785799	787672	ENSG00000237491.8|AL669831.5|lncRNA|chr1:785799:787672:+	0	+
#Deleted in new
chr1	78619921	78620058	ENSG00000137959.15|IFI44L|pc|chr1:78619921:78620058:+	0	+
#Deleted in new
chr1	78620381	78620571	ENSG00000137959.15|IFI44L|pc|chr1:78620381:78620571:+	0	+
#Deleted in new
chr1	78620402	78620571	ENSG00000137959.15|IFI44L|pc|chr1:78620402:78620571:+	0	+
#Deleted in new
chr1	78620448	78620571	ENSG00000137959.15|IFI44L|pc|chr1:78620448:78620571:+	0	+
#Deleted in new
chr1	78620456	78620571	ENSG00000137959.15|IFI44L|pc|chr1:78620456:78620571:+	0	+
#Deleted in new
chr1	78620468	78620571	ENSG00000137959.15|IFI44L|pc|chr1:78620468:78620571:+	0	+
#Deleted in new
chr1	78620877	78620971	ENSG00000137959.15|IFI44L|pc|chr1:78620877:78620971:+	0	+
#Partially deleted in new
chr1	78625669	78628999	ENSG00000137959.15|IFI44L|pc|chr1:78625669:78628999:+	0	+
#Deleted in new
chr1	78628950	78628999	ENSG00000137959.15|IFI44L|pc|chr1:78628950:78628999:+	0	+
#Deleted in new
chr1	78629992	78630187	ENSG00000137959.15|IFI44L|pc|chr1:78629992:78630187:+	0	+
#Deleted in new
chr1	78631440	78631647	ENSG00000137959.15|IFI44L|pc|chr1:78631440:78631647:+	0	+
#Partially deleted in new
chr1	78635336	78635983	ENSG00000137959.15|IFI44L|pc|chr1:78635336:78635983:+	0	+
#Deleted in new
chr17	863886	864097	ENSG00000167693.16|NXN|pc|chr17:863886:864097:-	0	-
#Deleted in new
chr1	786392	786866	ENSG00000237491.8|AL669831.5|lncRNA|chr1:786392:786866:+	0	+
#Deleted in new
chr17	864014	864111	ENSG00000167693.16|NXN|pc|chr17:864014:864111:-	0	-
#Partially deleted in new
chr17	8744828	8745219	ENSG00000161973.10|CCDC42|pc|chr17:8744828:8745219:-	0	-
#Deleted in new
chr17	877901	878272	ENSG00000262133.1|AC087392.2|lncRNA|chr17:877901:878272:+	0	+
#Deleted in new
chr17	88640	88705	ENSG00000280136.2|AC240565.1|lncRNA|chr17:88640:88705:-	0	-
#Partially deleted in new
chr17	8881787	8882508	ENSG00000141506.13|PIK3R5|pc|chr17:8881787:8882508:-	0	-
#Deleted in new
chr17	8884919	8885086	ENSG00000141506.13|PIK3R5|pc|chr17:8884919:8885086:-	0	-
#Deleted in new
chr1	78946273	78946426	ENSG00000162618.13|ADGRL4|pc|chr1:78946273:78946426:-	0	-
#Partially deleted in new
chr17	8966766	8967070	ENSG00000266389.1|AC002091.2|lncRNA|chr17:8966766:8967070:+	0	+
#Deleted in new
chr17	905152	905242	ENSG00000167693.16|NXN|pc|chr17:905152:905242:-	0	-
#Deleted in new
chr17	907703	908034	ENSG00000167693.16|NXN|pc|chr17:907703:908034:-	0	-
#Partially deleted in new
chr17	909631	909932	ENSG00000262003.1|AC087392.1|lncRNA|chr17:909631:909932:+	0	+
#Partially deleted in new
chr1	7915893	7920923	ENSG00000049249.8|TNFRSF9|pc|chr1:7915893:7920923:-	0	-
#Deleted in new
chr17	9172793	9172881	ENSG00000262966.2|AC005695.1|lncRNA|chr17:9172793:9172881:-	0	-
#Deleted in new
chr17	9283173	9283274	ENSG00000263708.2|AC005695.2|lncRNA|chr17:9283173:9283274:+	0	+
#Deleted in new
chr1	792881	793041	ENSG00000237491.8|AL669831.5|lncRNA|chr1:792881:793041:+	0	+
#Deleted in new
chr17	9305493	9305651	ENSG00000263708.2|AC005695.2|lncRNA|chr17:9305493:9305651:+	0	+
#Deleted in new
chr1	79323768	79323959	ENSG00000235011.2|AL353651.1|lncRNA|chr1:79323768:79323959:+	0	+
#Deleted in new
chr1	79323768	79324060	ENSG00000282898.1|AL353651.2|lncRNA|chr1:79323768:79324060:-	0	-
#Deleted in new
chr1	79324585	79324852	ENSG00000282898.1|AL353651.2|lncRNA|chr1:79324585:79324852:-	0	-
#Deleted in new
chr1	79324699	79324863	ENSG00000235011.2|AL353651.1|lncRNA|chr1:79324699:79324863:+	0	+
#Deleted in new
chr1	7943138	7943165	ENSG00000049249.8|TNFRSF9|pc|chr1:7943138:7943165:-	0	-
#Deleted in new
chr17	9452430	9452505	ENSG00000225751.2|AC087501.1|lncRNA|chr17:9452430:9452505:+	0	+
#Deleted in new
chr17	9464741	9464865	ENSG00000262815.1|AC087501.3|lncRNA|chr17:9464741:9464865:+	0	+
#Deleted in new
chr17	9467033	9467422	ENSG00000262815.1|AC087501.3|lncRNA|chr17:9467033:9467422:+	0	+
#Deleted in new
chr17	9469105	9469250	ENSG00000225751.2|AC087501.1|lncRNA|chr17:9469105:9469250:+	0	+
#Deleted in new
chr17	9469758	9470014	ENSG00000225751.2|AC087501.1|lncRNA|chr17:9469758:9470014:+	0	+
#Deleted in new
chr1	795469	795513	ENSG00000237491.8|AL669831.5|lncRNA|chr1:795469:795513:+	0	+
#Deleted in new
chr1	795469	795582	ENSG00000237491.8|AL669831.5|lncRNA|chr1:795469:795582:+	0	+
#Deleted in new
chr17	9547297	9547427	ENSG00000263051.1|AC087501.4|lncRNA|chr17:9547297:9547427:+	0	+
#Deleted in new
chr17	9552798	9553223	ENSG00000170310.14|STX8|pc|chr17:9552798:9553223:-	0	-
#Partially deleted in new
chr17	9569497	9569942	ENSG00000170310.14|STX8|pc|chr17:9569497:9569942:-	0	-
#Deleted in new
chr17	9584181	9584371	ENSG00000166596.14|CFAP52|pc|chr17:9584181:9584371:+	0	+
#Partially deleted in new
chr17	9597511	9597621	ENSG00000166596.14|CFAP52|pc|chr17:9597511:9597621:+	0	+
#Deleted in new
chr17	9610290	9610342	ENSG00000166596.14|CFAP52|pc|chr17:9610290:9610342:+	0	+
#Partially deleted in new
chr1	7961893	7962081	ENSG00000116288.12|PARK7|pc|chr1:7961893:7962081:+	0	+
#Deleted in new
chr1	7961968	7962101	ENSG00000116288.12|PARK7|pc|chr1:7961968:7962101:+	0	+
#Deleted in new
chr17	9638767	9638889	ENSG00000265349.1|AC118755.2|lncRNA|chr17:9638767:9638889:-	0	-
#Deleted in new
chr17	9639013	9639145	ENSG00000166596.14|CFAP52|pc|chr17:9639013:9639145:+	0	+
#Deleted in new
chr17	9669705	9669849	ENSG00000154914.16|USP43|pc|chr17:9669705:9669849:+	0	+
#Deleted in new
chr1	7969084	7969148	ENSG00000116288.12|PARK7|pc|chr1:7969084:7969148:+	0	+
#Deleted in new
chr1	7971628	7971957	ENSG00000116288.12|PARK7|pc|chr1:7971628:7971957:+	0	+
#Partially deleted in new
chr17	9764187	9764331	ENSG00000282882.1|AC027045.2|lncRNA|chr17:9764187:9764331:+	0	+
#Deleted in new
chr17	9785178	9785249	ENSG00000282882.1|AC027045.2|lncRNA|chr17:9785178:9785249:+	0	+
#Deleted in new
chr17	9803782	9805073	ENSG00000282882.1|AC027045.2|lncRNA|chr17:9803782:9805073:+	0	+
#Deleted in new
chr17	9805442	9805628	ENSG00000283025.1|AC027045.3|lncRNA|chr17:9805442:9805628:+	0	+
#Partially deleted in new
chr17	9865833	9866977	ENSG00000065325.12|GLP2R|pc|chr17:9865833:9866977:+	0	+
#Partially deleted in new
chr1	7991133	7991447	ENSG00000284747.1|AL034417.4|lncRNA|chr1:7991133:7991447:+	0	+
#Deleted in new
chr1	7994546	7994664	ENSG00000284747.1|AL034417.4|lncRNA|chr1:7994546:7994664:+	0	+
#Deleted in new
chr1	7996320	7996443	ENSG00000284747.1|AL034417.4|lncRNA|chr1:7996320:7996443:+	0	+
#Deleted in new
chr1	7998186	7998367	ENSG00000284716.1|AL034417.3|lncRNA|chr1:7998186:7998367:-	0	-
#Deleted in new
chr1	7999072	7999934	ENSG00000284716.1|AL034417.3|lncRNA|chr1:7999072:7999934:-	0	-
#Partially deleted in new
chr1	7999539	8000728	ENSG00000284747.1|AL034417.4|lncRNA|chr1:7999539:8000728:+	0	+
#Deleted in new
chr1	8000087	8000185	ENSG00000284747.1|AL034417.4|lncRNA|chr1:8000087:8000185:+	0	+
#Deleted in new
chr1	8000605	8000728	ENSG00000284747.1|AL034417.4|lncRNA|chr1:8000605:8000728:+	0	+
#Partially deleted in new
chr1	8001914	8002961	ENSG00000284747.1|AL034417.4|lncRNA|chr1:8001914:8002961:+	0	+
#Deleted in new
chr1	80114942	80116918	ENSG00000260322.1|AC098657.2|lncRNA|chr1:80114942:80116918:+	0	+
#Deleted in new
chr1	801606	801876	ENSG00000237491.8|AL669831.5|lncRNA|chr1:801606:801876:+	0	+
#Deleted in new
chr1	803566	803667	ENSG00000237491.8|AL669831.5|lncRNA|chr1:803566:803667:+	0	+
#Deleted in new
chr1	80373363	80373758	ENSG00000225598.1|AL606519.1|lncRNA|chr1:80373363:80373758:-	0	-
#Deleted in new
chr1	80374436	80374621	ENSG00000225598.1|AL606519.1|lncRNA|chr1:80374436:80374621:-	0	-
#Deleted in new
chr1	803918	804222	ENSG00000237491.8|AL669831.5|lncRNA|chr1:803918:804222:+	0	+
#Deleted in new
chr1	803921	804222	ENSG00000237491.8|AL669831.5|lncRNA|chr1:803921:804222:+	0	+
#Deleted in new
chr1	803950	804222	ENSG00000237491.8|AL669831.5|lncRNA|chr1:803950:804222:+	0	+
#Deleted in new
chr1	804775	804832	ENSG00000237491.8|AL669831.5|lncRNA|chr1:804775:804832:+	0	+
#Deleted in new
chr1	804775	804875	ENSG00000237491.8|AL669831.5|lncRNA|chr1:804775:804875:+	0	+
#Deleted in new
chr1	804775	804966	ENSG00000237491.8|AL669831.5|lncRNA|chr1:804775:804966:+	0	+
#Deleted in new
chr1	804798	804966	ENSG00000237491.8|AL669831.5|lncRNA|chr1:804798:804966:+	0	+
#Deleted in new
chr1	804931	804966	ENSG00000237491.8|AL669831.5|lncRNA|chr1:804931:804966:+	0	+
#Deleted in new
chr1	80540588	80540636	ENSG00000234184.5|LINC01781|lncRNA|chr1:80540588:80540636:+	0	+
#Deleted in new
chr1	80584289	80584363	ENSG00000224326.1|AL136234.1|lncRNA|chr1:80584289:80584363:-	0	-
#Deleted in new
chr1	80644224	80644353	ENSG00000234184.5|LINC01781|lncRNA|chr1:80644224:80644353:+	0	+
#Deleted in new
chr18	10125339	10125501	ENSG00000265554.1|AP005271.1|lncRNA|chr18:10125339:10125501:+	0	+
#Deleted in new
chr18	10144156	10144406	ENSG00000265554.1|AP005271.1|lncRNA|chr18:10144156:10144406:+	0	+
#Deleted in new
chr18	10323131	10323311	ENSG00000264876.1|AP005209.1|lncRNA|chr18:10323131:10323311:-	0	-
#Partially deleted in new
chr18	10323533	10323694	ENSG00000264876.1|AP005209.1|lncRNA|chr18:10323533:10323694:-	0	-
#Deleted in new
chr18	10406137	10406215	ENSG00000260913.1|LINC01254|lncRNA|chr18:10406137:10406215:-	0	-
#Deleted in new
chr18	10474105	10474247	ENSG00000154856.12|APCDD1|pc|chr18:10474105:10474247:+	0	+
#Partially deleted in new
chr18	10539123	10539871	ENSG00000134265.12|NAPG|pc|chr18:10539123:10539871:+	0	+
#Deleted in new
chr18	10594589	10594716	ENSG00000265728.1|AP001099.1|lncRNA|chr18:10594589:10594716:+	0	+
#Deleted in new
chr18	10595793	10595886	ENSG00000265728.1|AP001099.1|lncRNA|chr18:10595793:10595886:+	0	+
#Deleted in new
chr18	10598857	10599121	ENSG00000265728.1|AP001099.1|lncRNA|chr18:10598857:10599121:+	0	+
#Deleted in new
chr18	10600995	10601313	ENSG00000265728.1|AP001099.1|lncRNA|chr18:10600995:10601313:+	0	+
#Deleted in new
chr18	10604745	10604798	ENSG00000265728.1|AP001099.1|lncRNA|chr18:10604745:10604798:+	0	+
#Deleted in new
chr18	1061462	1061535	ENSG00000263551.5|AP005328.1|lncRNA|chr18:1061462:1061535:+	0	+
#Deleted in new
chr18	10626228	10626353	ENSG00000266604.1|LINC01887|lncRNA|chr18:10626228:10626353:-	0	-
#Deleted in new
chr18	10627645	10627671	ENSG00000264072.1|AP001180.2|lncRNA|chr18:10627645:10627671:-	0	-
#Deleted in new
chr18	10628450	10628846	ENSG00000264072.1|AP001180.2|lncRNA|chr18:10628450:10628846:-	0	-
#Deleted in new
chr18	10661932	10662180	ENSG00000260779.1|AP001180.1|lncRNA|chr18:10661932:10662180:+	0	+
#Deleted in new
chr18	10663320	10663574	ENSG00000260779.1|AP001180.1|lncRNA|chr18:10663320:10663574:+	0	+
#Deleted in new
chr18	10663823	10666887	ENSG00000260779.1|AP001180.1|lncRNA|chr18:10663823:10666887:+	0	+
#Deleted in new
chr18	10666482	10666813	ENSG00000154864.11|PIEZO2|pc|chr18:10666482:10666813:-	0	-
#Partially deleted in new
chr18	10701868	10701981	ENSG00000154864.11|PIEZO2|pc|chr18:10701868:10701981:-	0	-
#Partially deleted in new
chr18	10709184	10709599	ENSG00000264843.1|AP001180.4|lncRNA|chr18:10709184:10709599:+	0	+
#Deleted in new
chr18	10763276	10763278	ENSG00000154864.11|PIEZO2|pc|chr18:10763276:10763278:-	0	-
#Deleted in new
chr18	10890479	10890692	ENSG00000154864.11|PIEZO2|pc|chr18:10890479:10890692:-	0	-
#Deleted in new
chr18	10893616	10893674	ENSG00000263952.5|AP005120.1|lncRNA|chr18:10893616:10893674:+	0	+
#Deleted in new
chr18	10894511	10894805	ENSG00000263952.5|AP005120.1|lncRNA|chr18:10894511:10894805:+	0	+
#Deleted in new
chr18	1099007	1099347	ENSG00000263551.5|AP005328.1|lncRNA|chr18:1099007:1099347:+	0	+
#Deleted in new
chr18	11102	11595	ENSG00000262352.1|LINC02564|lncRNA|chr18:11102:11595:+	0	+
#Deleted in new
chr18	11190	11595	ENSG00000262352.1|LINC02564|lncRNA|chr18:11190:11595:+	0	+
#Deleted in new
chr18	11366912	11367447	ENSG00000267051.1|AP005229.1|lncRNA|chr18:11366912:11367447:-	0	-
#Deleted in new
chr18	11368532	11368652	ENSG00000267051.1|AP005229.1|lncRNA|chr18:11368532:11368652:-	0	-
#Deleted in new
chr18	1137813	1137864	ENSG00000263551.5|AP005328.1|lncRNA|chr18:1137813:1137864:+	0	+
#Deleted in new
chr18	11378254	11378409	ENSG00000267051.1|AP005229.1|lncRNA|chr18:11378254:11378409:-	0	-
#Partially deleted in new
chr18	11390032	11390729	ENSG00000273119.1|AP005229.2|lncRNA|chr18:11390032:11390729:-	0	-
#Deleted in new
chr18	11447755	11447990	ENSG00000267564.1|AP001109.1|lncRNA|chr18:11447755:11447990:-	0	-
#Deleted in new
chr18	11454477	11454533	ENSG00000267425.1|LINC01928|lncRNA|chr18:11454477:11454533:+	0	+
#Deleted in new
chr18	11454751	11454838	ENSG00000267425.1|LINC01928|lncRNA|chr18:11454751:11454838:+	0	+
#Deleted in new
chr18	11465276	11465510	ENSG00000267425.1|LINC01928|lncRNA|chr18:11465276:11465510:+	0	+
#Deleted in new
chr18	11465869	11465996	ENSG00000267425.1|LINC01928|lncRNA|chr18:11465869:11465996:+	0	+
#Deleted in new
chr18	11488569	11488595	ENSG00000267252.5|LINC01255|lncRNA|chr18:11488569:11488595:+	0	+
#Deleted in new
chr18	11488833	11488922	ENSG00000267252.5|LINC01255|lncRNA|chr18:11488833:11488922:+	0	+
#Deleted in new
chr18	11489325	11489369	ENSG00000267564.1|AP001109.1|lncRNA|chr18:11489325:11489369:-	0	-
#Deleted in new
chr18	11503733	11503884	ENSG00000267252.5|LINC01255|lncRNA|chr18:11503733:11503884:+	0	+
#Deleted in new
chr18	11504827	11505059	ENSG00000267252.5|LINC01255|lncRNA|chr18:11504827:11505059:+	0	+
#Deleted in new
chr18	11620716	11620973	ENSG00000267143.1|AP001120.2|lncRNA|chr18:11620716:11620973:-	0	-
#Deleted in new
chr18	11621119	11621158	ENSG00000267143.1|AP001120.2|lncRNA|chr18:11621119:11621158:-	0	-
#Deleted in new
chr18	11702070	11702291	ENSG00000141404.15|GNAL|pc|chr18:11702070:11702291:+	0	+
#Deleted in new
chr18	1174645	1174804	ENSG00000263551.5|AP005328.1|lncRNA|chr18:1174645:1174804:+	0	+
#Deleted in new
chr18	1174645	1174823	ENSG00000263551.5|AP005328.1|lncRNA|chr18:1174645:1174823:+	0	+
#Deleted in new
chr18	11810405	11810876	ENSG00000267455.1|AP005137.1|lncRNA|chr18:11810405:11810876:-	0	-
#Deleted in new
chr18	11833505	11833667	ENSG00000141404.15|GNAL|pc|chr18:11833505:11833667:+	0	+
#Deleted in new
chr18	11853778	11853965	ENSG00000255112.2|CHMP1B|pc|chr18:11853778:11853965:+	0	+
#Deleted in new
chr18	11857154	11857554	ENSG00000272703.1|AP005137.2|lncRNA|chr18:11857154:11857554:-	0	-
#Deleted in new
chr18	11857439	11857785	ENSG00000141404.15|GNAL|pc|chr18:11857439:11857785:+	0	+
#Deleted in new
chr18	11874050	11874403	ENSG00000141404.15|GNAL|pc|chr18:11874050:11874403:+	0	+
#Deleted in new
chr18	11891185	11891470	ENSG00000154889.16|MPPE1|pc|chr18:11891185:11891470:-	0	-
#Deleted in new
chr18	11895184	11895277	ENSG00000154889.16|MPPE1|pc|chr18:11895184:11895277:-	0	-
#Deleted in new
chr18	11897525	11897620	ENSG00000154889.16|MPPE1|pc|chr18:11897525:11897620:-	0	-
#Deleted in new
chr18	11902266	11902358	ENSG00000154889.16|MPPE1|pc|chr18:11902266:11902358:-	0	-
#Deleted in new
chr18	11905181	11905279	ENSG00000154889.16|MPPE1|pc|chr18:11905181:11905279:-	0	-
#Deleted in new
chr18	11905737	11905953	ENSG00000154889.16|MPPE1|pc|chr18:11905737:11905953:-	0	-
#Partially deleted in new
chr18	11905825	11906309	ENSG00000154889.16|MPPE1|pc|chr18:11905825:11906309:-	0	-
#Deleted in new
chr18	11905911	11905953	ENSG00000154889.16|MPPE1|pc|chr18:11905911:11905953:-	0	-
#Deleted in new
chr18	11914194	11914344	ENSG00000267079.1|AP001269.2|lncRNA|chr18:11914194:11914344:-	0	-
#Partially deleted in new
chr18	11981024	11981205	ENSG00000141401.11|IMPA2|pc|chr18:11981024:11981205:+	0	+
#Deleted in new
chr18	11981036	11981130	ENSG00000141401.11|IMPA2|pc|chr18:11981036:11981130:+	0	+
#Deleted in new
chr18	11993987	11994372	ENSG00000266955.1|AP001269.1|lncRNA|chr18:11993987:11994372:-	0	-
#Deleted in new
chr18	11994795	11994938	ENSG00000266955.1|AP001269.1|lncRNA|chr18:11994795:11994938:-	0	-
#Deleted in new
chr18	12008332	12008360	ENSG00000141401.11|IMPA2|pc|chr18:12008332:12008360:+	0	+
#Deleted in new
chr18	12008332	12008591	ENSG00000141401.11|IMPA2|pc|chr18:12008332:12008591:+	0	+
#Deleted in new
chr18	12017613	12018285	ENSG00000141401.11|IMPA2|pc|chr18:12017613:12018285:+	0	+
#Deleted in new
chr18	12021701	12021822	ENSG00000141401.11|IMPA2|pc|chr18:12021701:12021822:+	0	+
#Deleted in new
chr18	12031177	12031218	ENSG00000267480.1|AP001542.3|lncRNA|chr18:12031177:12031218:-	0	-
#Deleted in new
chr18	12031695	12032181	ENSG00000267480.1|AP001542.3|lncRNA|chr18:12031695:12032181:-	0	-
#Deleted in new
chr18	12081539	12081658	ENSG00000267722.1|AP002414.5|lncRNA|chr18:12081539:12081658:+	0	+
#Deleted in new
chr18	12085171	12085267	ENSG00000267722.1|AP002414.5|lncRNA|chr18:12085171:12085267:+	0	+
#Split in new
chr18	12127747	12129749	ENSG00000181626.11|ANKRD62|pc|chr18:12127747:12129749:+	0	+
#Partially deleted in new
chr1	8121473	8122702	ENSG00000238290.1|AL034417.2|lncRNA|chr1:8121473:8122702:+	0	+
#Deleted in new
chr18	12199344	12200089	ENSG00000279285.1|AP005264.7|lncRNA|chr18:12199344:12200089:+	0	+
#Deleted in new
chr18	12200778	12201174	ENSG00000267643.1|AP005264.4|lncRNA|chr18:12200778:12201174:+	0	+
#Deleted in new
chr18	12201953	12201979	ENSG00000267643.1|AP005264.4|lncRNA|chr18:12201953:12201979:+	0	+
#Deleted in new
chr18	12230410	12230853	ENSG00000267247.1|AP005264.3|lncRNA|chr18:12230410:12230853:-	0	-
#Deleted in new
chr18	12231531	12231573	ENSG00000267247.1|AP005264.3|lncRNA|chr18:12231531:12231573:-	0	-
#Partially deleted in new
chr18	12279426	12282739	ENSG00000280302.1|AP005264.8|lncRNA|chr18:12279426:12282739:+	0	+
#Partially deleted in new
chr18	12288307	12288654	ENSG00000267069.1|AP005264.1|lncRNA|chr18:12288307:12288654:+	0	+
#Deleted in new
chr18	12291102	12291488	ENSG00000267069.1|AP005264.1|lncRNA|chr18:12291102:12291488:+	0	+
#Deleted in new
chr18	12307668	12307769	ENSG00000176014.12|TUBB6|pc|chr18:12307668:12307769:+	0	+
#Deleted in new
chr18	12320535	12320744	ENSG00000176014.12|TUBB6|pc|chr18:12320535:12320744:+	0	+
#Deleted in new
chr18	12320628	12320744	ENSG00000176014.12|TUBB6|pc|chr18:12320628:12320744:+	0	+
#Deleted in new
chr18	12337112	12337225	ENSG00000176014.12|TUBB6|pc|chr18:12337112:12337225:+	0	+
#Partially deleted in new
chr18	12340936	12344247	ENSG00000141385.9|AFG3L2|pc|chr18:12340936:12344247:-	0	-
#Deleted in new
chr18	12410717	12410858	ENSG00000141391.13|PRELID3A|pc|chr18:12410717:12410858:+	0	+
#Deleted in new
chr18	12419891	12419947	ENSG00000141391.13|PRELID3A|pc|chr18:12419891:12419947:+	0	+
#Deleted in new
chr18	12420016	12420148	ENSG00000141391.13|PRELID3A|pc|chr18:12420016:12420148:+	0	+
#Deleted in new
chr18	12422247	12422341	ENSG00000141391.13|PRELID3A|pc|chr18:12422247:12422341:+	0	+
#Deleted in new
chr18	12431149	12431424	ENSG00000141391.13|PRELID3A|pc|chr18:12431149:12431424:+	0	+
#Deleted in new
chr18	12431149	12431463	ENSG00000141391.13|PRELID3A|pc|chr18:12431149:12431463:+	0	+
#Partially deleted in new
chr18	12431149	12432233	ENSG00000141391.13|PRELID3A|pc|chr18:12431149:12432233:+	0	+
#Partially deleted in new
chr18	12431149	12432235	ENSG00000141391.13|PRELID3A|pc|chr18:12431149:12432235:+	0	+
#Partially deleted in new
chr18	12431149	12432238	ENSG00000141391.13|PRELID3A|pc|chr18:12431149:12432238:+	0	+
#Deleted in new
chr18	12432896	12433000	ENSG00000267108.1|AP001029.1|lncRNA|chr18:12432896:12433000:+	0	+
#Deleted in new
chr18	12437571	12437635	ENSG00000267108.1|AP001029.1|lncRNA|chr18:12437571:12437635:+	0	+
#Deleted in new
chr18	12438889	12439106	ENSG00000267199.1|AP001029.2|lncRNA|chr18:12438889:12439106:+	0	+
#Deleted in new
chr18	12442971	12443272	ENSG00000267199.1|AP001029.2|lncRNA|chr18:12442971:12443272:+	0	+
#Deleted in new
chr18	12443392	12443536	ENSG00000267199.1|AP001029.2|lncRNA|chr18:12443392:12443536:+	0	+
#Deleted in new
chr18	12443392	12443575	ENSG00000267199.1|AP001029.2|lncRNA|chr18:12443392:12443575:+	0	+
#Deleted in new
chr18	12516070	12516225	ENSG00000134278.15|SPIRE1|pc|chr18:12516070:12516225:-	0	-
#Deleted in new
chr18	12636323	12636340	ENSG00000134278.15|SPIRE1|pc|chr18:12636323:12636340:-	0	-
#Deleted in new
chr18	12653000	12653085	ENSG00000134278.15|SPIRE1|pc|chr18:12653000:12653085:-	0	-
#Deleted in new
chr18	12663457	12663471	ENSG00000128789.20|PSMG2|pc|chr18:12663457:12663471:+	0	+
#Deleted in new
chr18	12665064	12665139	ENSG00000128789.20|PSMG2|pc|chr18:12665064:12665139:+	0	+
#Partially deleted in new
chr18	1268310	1269852	ENSG00000132204.13|LINC00470|lncRNA|chr18:1268310:1269852:-	0	-
#Partially deleted in new
chr18	12684295	12686450	ENSG00000101624.10|CEP76|pc|chr18:12684295:12686450:-	0	-
#Deleted in new
chr18	1269010	1269852	ENSG00000132204.13|LINC00470|lncRNA|chr18:1269010:1269852:-	0	-
#Deleted in new
chr18	1269175	1269852	ENSG00000132204.13|LINC00470|lncRNA|chr18:1269175:1269852:-	0	-
#Deleted in new
chr18	12692167	12692312	ENSG00000101624.10|CEP76|pc|chr18:12692167:12692312:-	0	-
#Deleted in new
chr18	1269566	1269852	ENSG00000132204.13|LINC00470|lncRNA|chr18:1269566:1269852:-	0	-
#Deleted in new
chr18	1269671	1269852	ENSG00000132204.13|LINC00470|lncRNA|chr18:1269671:1269852:-	0	-
#Deleted in new
chr18	1269686	1269852	ENSG00000132204.13|LINC00470|lncRNA|chr18:1269686:1269852:-	0	-
#Deleted in new
chr18	1269820	1269852	ENSG00000132204.13|LINC00470|lncRNA|chr18:1269820:1269852:-	0	-
#Deleted in new
chr18	1272441	1272511	ENSG00000132204.13|LINC00470|lncRNA|chr18:1272441:1272511:-	0	-
#Deleted in new
chr18	1273360	1273533	ENSG00000132204.13|LINC00470|lncRNA|chr18:1273360:1273533:-	0	-
#Deleted in new
chr18	12738964	12739215	ENSG00000266961.1|AP005482.2|lncRNA|chr18:12738964:12739215:-	0	-
#Deleted in new
chr18	12749293	12749421	ENSG00000267654.1|LINC01882|lncRNA|chr18:12749293:12749421:-	0	-
#Deleted in new
chr18	12750009	12750068	ENSG00000266961.1|AP005482.2|lncRNA|chr18:12750009:12750068:-	0	-
#Deleted in new
chr18	1275965	1276077	ENSG00000132204.13|LINC00470|lncRNA|chr18:1275965:1276077:-	0	-
#Deleted in new
chr18	1275965	1276087	ENSG00000132204.13|LINC00470|lncRNA|chr18:1275965:1276087:-	0	-
#Deleted in new
chr18	12774650	12775923	ENSG00000260302.1|AP005482.1|lncRNA|chr18:12774650:12775923:-	0	-
#Deleted in new
chr18	1278567	1278633	ENSG00000132204.13|LINC00470|lncRNA|chr18:1278567:1278633:-	0	-
#Deleted in new
chr18	12818943	12819000	ENSG00000175354.18|PTPN2|pc|chr18:12818943:12819000:-	0	-
#Deleted in new
chr18	12819213	12819282	ENSG00000175354.18|PTPN2|pc|chr18:12819213:12819282:-	0	-
#Deleted in new
chr18	12840713	12840962	ENSG00000175354.18|PTPN2|pc|chr18:12840713:12840962:-	0	-
#Deleted in new
chr18	12843904	12843981	ENSG00000175354.18|PTPN2|pc|chr18:12843904:12843981:-	0	-
#Deleted in new
chr18	12862083	12862473	ENSG00000175354.18|PTPN2|pc|chr18:12862083:12862473:-	0	-
#Deleted in new
chr18	12929498	12929643	ENSG00000175354.18|PTPN2|pc|chr18:12929498:12929643:-	0	-
#Partially deleted in new
chr18	12964435	12964495	ENSG00000085415.15|SEH1L|pc|chr18:12964435:12964495:+	0	+
#Deleted in new
chr18	12971562	12974555	ENSG00000085415.15|SEH1L|pc|chr18:12971562:12974555:+	0	+
#Deleted in new
chr18	12975732	12975882	ENSG00000085415.15|SEH1L|pc|chr18:12975732:12975882:+	0	+
#Partially deleted in new
chr18	12976287	12978892	ENSG00000085415.15|SEH1L|pc|chr18:12976287:12978892:+	0	+
#Deleted in new
chr18	13000311	13000486	ENSG00000101639.18|CEP192|pc|chr18:13000311:13000486:+	0	+
#Partially deleted in new
chr18	13103874	13103967	ENSG00000101639.18|CEP192|pc|chr18:13103874:13103967:+	0	+
#Deleted in new
chr18	13151	13354	ENSG00000262352.1|LINC02564|lncRNA|chr18:13151:13354:+	0	+
#Deleted in new
chr18	13183401	13183709	ENSG00000267286.1|AP001198.2|lncRNA|chr18:13183401:13183709:-	0	-
#Deleted in new
chr18	13185459	13185617	ENSG00000267286.1|AP001198.2|lncRNA|chr18:13185459:13185617:-	0	-
#Deleted in new
chr18	13203773	13205369	ENSG00000267239.1|AP001198.1|lncRNA|chr18:13203773:13205369:-	0	-
#Deleted in new
chr18	13214082	13214316	ENSG00000267239.1|AP001198.1|lncRNA|chr18:13214082:13214316:-	0	-
#Partially deleted in new
chr18	13234944	13235125	ENSG00000267177.1|AP002505.1|lncRNA|chr18:13234944:13235125:-	0	-
#Partially deleted in new
chr18	13236423	13236470	ENSG00000267177.1|AP002505.1|lncRNA|chr18:13236423:13236470:-	0	-
#Deleted in new
chr18	13366144	13366243	ENSG00000267393.1|AP002439.1|lncRNA|chr18:13366144:13366243:-	0	-
#Deleted in new
chr18	13423574	13423693	ENSG00000267690.1|LDLRAD4-AS1|lncRNA|chr18:13423574:13423693:-	0	-
#Deleted in new
chr18	13425931	13426113	ENSG00000267690.1|LDLRAD4-AS1|lncRNA|chr18:13425931:13426113:-	0	-
#Deleted in new
chr18	13461019	13461246	ENSG00000267694.1|AP005131.5|lncRNA|chr18:13461019:13461246:-	0	-
#Deleted in new
chr18	13461374	13461464	ENSG00000267694.1|AP005131.5|lncRNA|chr18:13461374:13461464:-	0	-
#Deleted in new
chr18	13484036	13484119	ENSG00000168675.18|LDLRAD4|pc|chr18:13484036:13484119:+	0	+
#Deleted in new
chr18	13486461	13490676	ENSG00000267702.1|AP005131.6|lncRNA|chr18:13486461:13490676:+	0	+
#Deleted in new
chr18	13491231	13491469	ENSG00000168675.18|LDLRAD4|pc|chr18:13491231:13491469:+	0	+
#Deleted in new
chr18	13491231	13491588	ENSG00000168675.18|LDLRAD4|pc|chr18:13491231:13491588:+	0	+
#Partially deleted in new
chr18	13514519	13516107	ENSG00000267136.1|AP005131.1|lncRNA|chr18:13514519:13516107:-	0	-
#Partially deleted in new
chr18	13519731	13522888	ENSG00000267136.1|AP005131.1|lncRNA|chr18:13519731:13522888:-	0	-
#Deleted in new
chr18	1353406	1353462	ENSG00000132204.13|LINC00470|lncRNA|chr18:1353406:1353462:-	0	-
#Deleted in new
chr18	13542291	13542460	ENSG00000168675.18|LDLRAD4|pc|chr18:13542291:13542460:+	0	+
#Deleted in new
chr18	13542406	13542460	ENSG00000168675.18|LDLRAD4|pc|chr18:13542406:13542460:+	0	+
#Deleted in new
chr18	13542915	13543070	ENSG00000168675.18|LDLRAD4|pc|chr18:13542915:13543070:+	0	+
#Partially deleted in new
chr18	13542933	13543214	ENSG00000168675.18|LDLRAD4|pc|chr18:13542933:13543214:+	0	+
#Deleted in new
chr18	13543314	13543623	ENSG00000168675.18|LDLRAD4|pc|chr18:13543314:13543623:+	0	+
#Deleted in new
chr18	1358725	1358760	ENSG00000132204.13|LINC00470|lncRNA|chr18:1358725:1358760:-	0	-
#Deleted in new
chr18	1358725	1358762	ENSG00000132204.13|LINC00470|lncRNA|chr18:1358725:1358762:-	0	-
#Deleted in new
chr18	1359386	1359439	ENSG00000132204.13|LINC00470|lncRNA|chr18:1359386:1359439:-	0	-
#Deleted in new
chr18	1359386	1359557	ENSG00000132204.13|LINC00470|lncRNA|chr18:1359386:1359557:-	0	-
#Deleted in new
chr18	1359386	1359590	ENSG00000132204.13|LINC00470|lncRNA|chr18:1359386:1359590:-	0	-
#Deleted in new
chr18	1359386	1359629	ENSG00000132204.13|LINC00470|lncRNA|chr18:1359386:1359629:-	0	-
#Deleted in new
chr18	1359386	1359650	ENSG00000132204.13|LINC00470|lncRNA|chr18:1359386:1359650:-	0	-
#Deleted in new
chr18	13670870	13670968	ENSG00000177150.12|FAM210A|pc|chr18:13670870:13670968:-	0	-
#Deleted in new
chr18	1368088	1368597	ENSG00000132204.13|LINC00470|lncRNA|chr18:1368088:1368597:-	0	-
#Deleted in new
chr18	1368289	1368597	ENSG00000132204.13|LINC00470|lncRNA|chr18:1368289:1368597:-	0	-
#Deleted in new
chr18	1368484	1368597	ENSG00000132204.13|LINC00470|lncRNA|chr18:1368484:1368597:-	0	-
#Deleted in new
chr18	13687742	13687882	ENSG00000177150.12|FAM210A|pc|chr18:13687742:13687882:-	0	-
#Deleted in new
chr18	13697546	13697674	ENSG00000177150.12|FAM210A|pc|chr18:13697546:13697674:-	0	-
#Deleted in new
chr18	13710248	13710484	ENSG00000279962.1|AP001525.1|lncRNA|chr18:13710248:13710484:-	0	-
#Deleted in new
chr18	13730437	13730755	ENSG00000101654.17|RNMT|pc|chr18:13730437:13730755:+	0	+
#Deleted in new
chr18	13730626	13730755	ENSG00000101654.17|RNMT|pc|chr18:13730626:13730755:+	0	+
#Deleted in new
chr18	13824148	13824274	ENSG00000176136.6|MC5R|pc|chr18:13824148:13824274:+	0	+
#Deleted in new
chr18	1392085	1392185	ENSG00000132204.13|LINC00470|lncRNA|chr18:1392085:1392185:-	0	-
#Deleted in new
chr18	14010053	14010917	ENSG00000279352.1|AC006557.6|lncRNA|chr18:14010053:14010917:+	0	+
#Deleted in new
chr18	14010152	14010527	ENSG00000279352.1|AC006557.6|lncRNA|chr18:14010152:14010527:+	0	+
#Deleted in new
chr18	14057456	14057515	ENSG00000175322.11|ZNF519|pc|chr18:14057456:14057515:-	0	-
#Deleted in new
chr18	1406986	1407178	ENSG00000132204.13|LINC00470|lncRNA|chr18:1406986:1407178:-	0	-
#Deleted in new
chr18	1406986	1407180	ENSG00000132204.13|LINC00470|lncRNA|chr18:1406986:1407180:-	0	-
#Split in new
chr18	14071121	14077526	ENSG00000175322.11|ZNF519|pc|chr18:14071121:14077526:-	0	-
#Partially deleted in new
chr18	14075993	14077526	ENSG00000175322.11|ZNF519|pc|chr18:14075993:14077526:-	0	-
#Deleted in new
chr18	14078199	14078298	ENSG00000175322.11|ZNF519|pc|chr18:14078199:14078298:-	0	-
#Deleted in new
chr18	14078273	14078298	ENSG00000175322.11|ZNF519|pc|chr18:14078273:14078298:-	0	-
#Deleted in new
chr18	14080188	14080266	ENSG00000175322.11|ZNF519|pc|chr18:14080188:14080266:-	0	-
#Deleted in new
chr18	14082166	14082907	ENSG00000175322.11|ZNF519|pc|chr18:14082166:14082907:-	0	-
#Deleted in new
chr18	1408246	1408344	ENSG00000132204.13|LINC00470|lncRNA|chr18:1408246:1408344:-	0	-
#Deleted in new
chr18	14084196	14084347	ENSG00000175322.11|ZNF519|pc|chr18:14084196:14084347:-	0	-
#Deleted in new
chr18	14084331	14084347	ENSG00000175322.11|ZNF519|pc|chr18:14084331:14084347:-	0	-
#Deleted in new
chr18	14084876	14085076	ENSG00000175322.11|ZNF519|pc|chr18:14084876:14085076:-	0	-
#Partially deleted in new
chr18	14099937	14101773	ENSG00000175322.11|ZNF519|pc|chr18:14099937:14101773:-	0	-
#Split in new
chr18	14099942	14106439	ENSG00000175322.11|ZNF519|pc|chr18:14099942:14106439:-	0	-
#Deleted in new
chr18	14121792	14122171	ENSG00000175322.11|ZNF519|pc|chr18:14121792:14122171:-	0	-
#Partially deleted in new
chr18	14122162	14122603	ENSG00000175322.11|ZNF519|pc|chr18:14122162:14122603:-	0	-
#Deleted in new
chr18	14194	14653	ENSG00000263305.1|AP005530.1|lncRNA|chr18:14194:14653:-	0	-
#Deleted in new
chr18	14250287	14250407	ENSG00000283294.1|AP005212.5|lncRNA|chr18:14250287:14250407:+	0	+
#Deleted in new
chr18	14340381	14340651	ENSG00000283294.1|AP005212.5|lncRNA|chr18:14340381:14340651:+	0	+
#Deleted in new
chr18	14341521	14341635	ENSG00000283294.1|AP005212.5|lncRNA|chr18:14341521:14341635:+	0	+
#Deleted in new
chr18	14342224	14342505	ENSG00000283294.1|AP005212.5|lncRNA|chr18:14342224:14342505:+	0	+
#Deleted in new
chr18	14489	14653	ENSG00000263305.1|AP005530.1|lncRNA|chr18:14489:14653:-	0	-
#Partially deleted in new
chr18	14507338	14511993	ENSG00000183206.17|POTEC|pc|chr18:14507338:14511993:-	0	-
#Deleted in new
chr18	14527815	14528085	ENSG00000183206.17|POTEC|pc|chr18:14527815:14528085:-	0	-
#Deleted in new
chr18	14528824	14529045	ENSG00000183206.17|POTEC|pc|chr18:14528824:14529045:-	0	-
#Deleted in new
chr18	14528960	14529045	ENSG00000183206.17|POTEC|pc|chr18:14528960:14529045:-	0	-
#Partially deleted in new
chr18	14542625	14543493	ENSG00000183206.17|POTEC|pc|chr18:14542625:14543493:-	0	-
#Partially deleted in new
chr18	14542625	14543517	ENSG00000183206.17|POTEC|pc|chr18:14542625:14543517:-	0	-
#Partially deleted in new
chr18	14542625	14543585	ENSG00000183206.17|POTEC|pc|chr18:14542625:14543585:-	0	-
#Deleted in new
chr18	14728271	14728514	ENSG00000180777.13|ANKRD30B|pc|chr18:14728271:14728514:+	0	+
#Deleted in new
chr18	14748239	14748640	ENSG00000180777.13|ANKRD30B|pc|chr18:14748239:14748640:+	0	+
#Deleted in new
chr18	14748334	14748640	ENSG00000180777.13|ANKRD30B|pc|chr18:14748334:14748640:+	0	+
#Deleted in new
chr18	14763685	14764090	ENSG00000180777.13|ANKRD30B|pc|chr18:14763685:14764090:+	0	+
#Deleted in new
chr18	14769342	14769373	ENSG00000180777.13|ANKRD30B|pc|chr18:14769342:14769373:+	0	+
#Deleted in new
chr18	14772155	14772228	ENSG00000180777.13|ANKRD30B|pc|chr18:14772155:14772228:+	0	+
#Deleted in new
chr18	14782526	14782614	ENSG00000180777.13|ANKRD30B|pc|chr18:14782526:14782614:+	0	+
#Deleted in new
chr18	14787038	14787100	ENSG00000180777.13|ANKRD30B|pc|chr18:14787038:14787100:+	0	+
#Deleted in new
chr18	14802216	14802278	ENSG00000180777.13|ANKRD30B|pc|chr18:14802216:14802278:+	0	+
#Deleted in new
chr18	14803733	14803824	ENSG00000180777.13|ANKRD30B|pc|chr18:14803733:14803824:+	0	+
#Partially deleted in new
chr18	14816150	14816637	ENSG00000265737.1|AP006565.1|lncRNA|chr18:14816150:14816637:-	0	-
#Deleted in new
chr18	14816357	14817089	ENSG00000180777.13|ANKRD30B|pc|chr18:14816357:14817089:+	0	+
#Deleted in new
chr18	14825150	14825249	ENSG00000265737.1|AP006565.1|lncRNA|chr18:14825150:14825249:-	0	-
#Deleted in new
chr18	14828277	14828308	ENSG00000180777.13|ANKRD30B|pc|chr18:14828277:14828308:+	0	+
#Deleted in new
chr18	14850	14958	ENSG00000263305.1|AP005530.1|lncRNA|chr18:14850:14958:-	0	-
#Deleted in new
chr18	14903579	14903705	ENSG00000263618.5|AP005121.1|lncRNA|chr18:14903579:14903705:+	0	+
#Deleted in new
chr18	14905442	14905883	ENSG00000263618.5|AP005121.1|lncRNA|chr18:14905442:14905883:+	0	+
#Deleted in new
chr18	14905634	14905883	ENSG00000263618.5|AP005121.1|lncRNA|chr18:14905634:14905883:+	0	+
#Deleted in new
chr18	14905775	14905883	ENSG00000263618.5|AP005121.1|lncRNA|chr18:14905775:14905883:+	0	+
#Deleted in new
chr18	14915514	14915628	ENSG00000263618.5|AP005121.1|lncRNA|chr18:14915514:14915628:+	0	+
#Deleted in new
chr18	14946266	14946328	ENSG00000266554.1|LINC01443|lncRNA|chr18:14946266:14946328:+	0	+
#Deleted in new
chr18	14962069	14962283	ENSG00000266554.1|LINC01443|lncRNA|chr18:14962069:14962283:+	0	+
#Deleted in new
chr18	14969000	14969572	ENSG00000264301.1|LINC01444|lncRNA|chr18:14969000:14969572:-	0	-
#Deleted in new
chr18	14969605	14969778	ENSG00000264301.1|LINC01444|lncRNA|chr18:14969605:14969778:-	0	-
#Deleted in new
chr18	14969675	14969757	ENSG00000264301.1|LINC01444|lncRNA|chr18:14969675:14969757:-	0	-
#Deleted in new
chr18	14969877	14970468	ENSG00000264301.1|LINC01444|lncRNA|chr18:14969877:14970468:-	0	-
#Deleted in new
chr18	14971496	14971886	ENSG00000266554.1|LINC01443|lncRNA|chr18:14971496:14971886:+	0	+
#Deleted in new
chr18	14972355	14973739	ENSG00000266554.1|LINC01443|lncRNA|chr18:14972355:14973739:+	0	+
#Deleted in new
chr18	14972377	14973770	ENSG00000266554.1|LINC01443|lncRNA|chr18:14972377:14973770:+	0	+
#Partially deleted in new
chr18	14990706	14993235	ENSG00000279042.1|AP005242.4|lncRNA|chr18:14990706:14993235:-	0	-
#Deleted in new
chr18	15056844	15057381	ENSG00000278923.2|AP005242.3|lncRNA|chr18:15056844:15057381:-	0	-
#Deleted in new
chr18	15075444	15075557	ENSG00000263635.1|AP005242.1|lncRNA|chr18:15075444:15075557:+	0	+
#Deleted in new
chr18	1509182	1509223	ENSG00000266602.1|AC008109.1|lncRNA|chr18:1509182:1509223:+	0	+
#Deleted in new
chr18	15112062	15112122	ENSG00000263635.1|AP005242.1|lncRNA|chr18:15112062:15112122:+	0	+
#Deleted in new
chr18	15122473	15122767	ENSG00000263635.1|AP005242.1|lncRNA|chr18:15122473:15122767:+	0	+
#Deleted in new
chr18	15159723	15160107	ENSG00000264880.1|AP005901.2|lncRNA|chr18:15159723:15160107:-	0	-
#Deleted in new
chr18	15164326	15164467	ENSG00000264880.1|AP005901.2|lncRNA|chr18:15164326:15164467:-	0	-
#Deleted in new
chr18	15616	15822	ENSG00000262352.1|LINC02564|lncRNA|chr18:15616:15822:+	0	+
#Deleted in new
chr18	15616	15928	ENSG00000262352.1|LINC02564|lncRNA|chr18:15616:15928:+	0	+
#Deleted in new
chr18	1566451	1566524	ENSG00000266602.1|AC008109.1|lncRNA|chr18:1566451:1566524:+	0	+
#Deleted in new
chr18	1626238	1626367	ENSG00000266602.1|AC008109.1|lncRNA|chr18:1626238:1626367:+	0	+
#Deleted in new
chr18	162982	163174	ENSG00000101557.14|USP14|pc|chr18:162982:163174:+	0	+
#Deleted in new
chr18	1646514	1647097	ENSG00000266602.1|AC008109.1|lncRNA|chr18:1646514:1647097:+	0	+
#Deleted in new
chr18	1656449	1656495	ENSG00000266450.1|AC019183.1|lncRNA|chr18:1656449:1656495:+	0	+
#Deleted in new
chr18	16855	16898	ENSG00000263305.1|AP005530.1|lncRNA|chr18:16855:16898:-	0	-
#Deleted in new
chr1	81735089	81735330	ENSG00000117114.19|ADGRL2|pc|chr1:81735089:81735330:+	0	+
#Deleted in new
chr1	817370	818202	ENSG00000177757.2|FAM87B|lncRNA|chr1:817370:818202:+	0	+
#Partially deleted in new
chr18	1779858	1779955	ENSG00000266450.1|AC019183.1|lncRNA|chr18:1779858:1779955:+	0	+
#Deleted in new
chr18	1781713	1782064	ENSG00000264080.1|AP005057.1|lncRNA|chr18:1781713:1782064:+	0	+
#Deleted in new
chr1	818722	819837	ENSG00000177757.2|FAM87B|lncRNA|chr1:818722:819837:+	0	+
#Deleted in new
chr18	1886405	1886447	ENSG00000263745.6|AP005230.1|lncRNA|chr18:1886405:1886447:-	0	-
#Deleted in new
chr18	1906363	1906430	ENSG00000263745.6|AP005230.1|lncRNA|chr18:1906363:1906430:-	0	-
#Deleted in new
chr18	1906552	1906646	ENSG00000263745.6|AP005230.1|lncRNA|chr18:1906552:1906646:-	0	-
#Deleted in new
chr18	2059565	2059635	ENSG00000263745.6|AP005230.1|lncRNA|chr18:2059565:2059635:-	0	-
#Deleted in new
chr1	8208666	8208873	ENSG00000227634.2|LINC01714|lncRNA|chr1:8208666:8208873:+	0	+
#Deleted in new
chr1	8208671	8208873	ENSG00000227634.2|LINC01714|lncRNA|chr1:8208671:8208873:+	0	+
#Deleted in new
chr1	8210486	8210595	ENSG00000227634.2|LINC01714|lncRNA|chr1:8210486:8210595:+	0	+
#Deleted in new
chr18	21240674	21241007	ENSG00000265984.1|AC022809.1|lncRNA|chr18:21240674:21241007:-	0	-
#Deleted in new
chr18	2126199	2126377	ENSG00000263745.6|AP005230.1|lncRNA|chr18:2126199:2126377:-	0	-
#Deleted in new
chr18	2131496	2131540	ENSG00000263745.6|AP005230.1|lncRNA|chr18:2131496:2131540:-	0	-
#Deleted in new
chr18	21316877	21316904	ENSG00000265948.1|AC015878.2|lncRNA|chr18:21316877:21316904:+	0	+
#Deleted in new
chr18	21317461	21317795	ENSG00000265948.1|AC015878.2|lncRNA|chr18:21317461:21317795:+	0	+
#Deleted in new
chr18	21380285	21380675	ENSG00000265751.1|AC015878.1|lncRNA|chr18:21380285:21380675:-	0	-
#Deleted in new
chr1	8214624	8214678	ENSG00000227634.2|LINC01714|lncRNA|chr1:8214624:8214678:+	0	+
#Deleted in new
chr18	21468725	21468884	ENSG00000141449.14|GREB1L|pc|chr18:21468725:21468884:+	0	+
#Deleted in new
chr1	8215078	8215210	ENSG00000227634.2|LINC01714|lncRNA|chr1:8215078:8215210:+	0	+
#Deleted in new
chr18	21584309	21584440	ENSG00000141446.10|ESCO1|pc|chr18:21584309:21584440:-	0	-
#Deleted in new
chr18	21593042	21593488	ENSG00000141446.10|ESCO1|pc|chr18:21593042:21593488:-	0	-
#Deleted in new
chr18	21596952	21596999	ENSG00000141446.10|ESCO1|pc|chr18:21596952:21596999:-	0	-
#Partially deleted in new
chr18	21629061	21633524	ENSG00000167088.10|SNRPD1|pc|chr18:21629061:21633524:+	0	+
#Deleted in new
chr18	21630137	21630485	ENSG00000167088.10|SNRPD1|pc|chr18:21630137:21630485:+	0	+
#Deleted in new
chr18	21633127	21633524	ENSG00000167088.10|SNRPD1|pc|chr18:21633127:21633524:+	0	+
#Deleted in new
chr18	21661786	21662078	ENSG00000264188.1|AC106037.1|lncRNA|chr18:21661786:21662078:-	0	-
#Deleted in new
chr18	21662351	21662395	ENSG00000264188.1|AC106037.1|lncRNA|chr18:21662351:21662395:-	0	-
#Deleted in new
chr18	21673627	21673663	ENSG00000265656.1|AC106037.2|lncRNA|chr18:21673627:21673663:+	0	+
#Deleted in new
chr18	21682899	21683005	ENSG00000158201.9|ABHD3|pc|chr18:21682899:21683005:-	0	-
#Deleted in new
chr18	21812391	21812468	ENSG00000101752.11|MIB1|pc|chr18:21812391:21812468:+	0	+
#Deleted in new
chr1	8218189	8218533	ENSG00000233645.1|AL358876.2|lncRNA|chr1:8218189:8218533:-	0	-
#Deleted in new
chr18	21871445	21871725	ENSG00000264149.1|AC103987.2|lncRNA|chr18:21871445:21871725:-	0	-
#Deleted in new
chr18	21893859	21893996	ENSG00000264149.1|AC103987.2|lncRNA|chr18:21893859:21893996:-	0	-
#Deleted in new
chr18	22010295	22010433	ENSG00000265758.1|LINC01900|lncRNA|chr18:22010295:22010433:+	0	+
#Deleted in new
chr18	22026023	22026110	ENSG00000265758.1|LINC01900|lncRNA|chr18:22026023:22026110:+	0	+
#Deleted in new
chr1	8220396	8220529	ENSG00000233645.1|AL358876.2|lncRNA|chr1:8220396:8220529:-	0	-
#Deleted in new
chr18	22043216	22043351	ENSG00000265758.1|LINC01900|lncRNA|chr18:22043216:22043351:+	0	+
#Deleted in new
chr18	22043216	22043471	ENSG00000265758.1|LINC01900|lncRNA|chr18:22043216:22043471:+	0	+
#Deleted in new
chr18	22043216	22043478	ENSG00000265758.1|LINC01900|lncRNA|chr18:22043216:22043478:+	0	+
#Deleted in new
chr18	22043739	22043852	ENSG00000265758.1|LINC01900|lncRNA|chr18:22043739:22043852:+	0	+
#Deleted in new
chr18	22050843	22051159	ENSG00000265758.1|LINC01900|lncRNA|chr18:22050843:22051159:+	0	+
#Partially deleted in new
chr18	22098370	22098780	ENSG00000263588.1|AC091043.1|lncRNA|chr18:22098370:22098780:+	0	+
#Deleted in new
chr18	22213777	22214000	ENSG00000264825.1|AC091588.2|lncRNA|chr18:22213777:22214000:+	0	+
#Deleted in new
chr18	22227886	22228029	ENSG00000264825.1|AC091588.2|lncRNA|chr18:22227886:22228029:+	0	+
#Deleted in new
chr1	82261015	82261133	ENSG00000233290.1|AC093580.1|lncRNA|chr1:82261015:82261133:-	0	-
#Partially deleted in new
chr18	22699480	22699663	ENSG00000265943.1|AC090912.1|lncRNA|chr18:22699480:22699663:-	0	-
#Deleted in new
chr18	22704820	22704920	ENSG00000265943.1|AC090912.1|lncRNA|chr18:22704820:22704920:-	0	-
#Deleted in new
chr18	22754546	22754645	ENSG00000266850.1|AC090912.2|lncRNA|chr18:22754546:22754645:-	0	-
#Deleted in new
chr18	22778118	22778173	ENSG00000266850.1|AC090912.2|lncRNA|chr18:22778118:22778173:-	0	-
#Deleted in new
chr18	22784364	22784666	ENSG00000266850.1|AC090912.2|lncRNA|chr18:22784364:22784666:-	0	-
#Deleted in new
chr18	22786749	22786858	ENSG00000266850.1|AC090912.2|lncRNA|chr18:22786749:22786858:-	0	-
#Deleted in new
chr18	22786749	22786873	ENSG00000266850.1|AC090912.2|lncRNA|chr18:22786749:22786873:-	0	-
#Deleted in new
chr18	22798260	22798487	ENSG00000101773.18|RBBP8|pc|chr18:22798260:22798487:+	0	+
#Deleted in new
chr18	22907637	22907721	ENSG00000266850.1|AC090912.2|lncRNA|chr18:22907637:22907721:-	0	-
#Deleted in new
chr18	22911599	22911685	ENSG00000101773.18|RBBP8|pc|chr18:22911599:22911685:+	0	+
#Deleted in new
chr18	22916940	22917026	ENSG00000101773.18|RBBP8|pc|chr18:22916940:22917026:+	0	+
#Deleted in new
chr18	22920761	22920871	ENSG00000265943.1|AC090912.1|lncRNA|chr18:22920761:22920871:-	0	-
#Deleted in new
chr18	22929382	22929437	ENSG00000101773.18|RBBP8|pc|chr18:22929382:22929437:+	0	+
#Deleted in new
chr18	22934749	22934774	ENSG00000101773.18|RBBP8|pc|chr18:22934749:22934774:+	0	+
#Deleted in new
chr18	22937059	22937118	ENSG00000101773.18|RBBP8|pc|chr18:22937059:22937118:+	0	+
#Deleted in new
chr18	23149708	23149975	ENSG00000134508.12|CABLES1|pc|chr18:23149708:23149975:+	0	+
#Deleted in new
chr18	23190304	23190530	ENSG00000134508.12|CABLES1|pc|chr18:23190304:23190530:+	0	+
#Deleted in new
chr18	23204386	23204656	ENSG00000134490.13|TMEM241|pc|chr18:23204386:23204656:-	0	-
#Deleted in new
chr18	23331029	23331215	ENSG00000134490.13|TMEM241|pc|chr18:23331029:23331215:-	0	-
#Deleted in new
chr18	23331029	23331259	ENSG00000134490.13|TMEM241|pc|chr18:23331029:23331259:-	0	-
#Deleted in new
chr18	23331254	23331574	ENSG00000134490.13|TMEM241|pc|chr18:23331254:23331574:-	0	-
#Deleted in new
chr18	23486107	23486603	ENSG00000101782.14|RIOK3|pc|chr18:23486107:23486603:+	0	+
#Deleted in new
chr18	23506183	23506642	ENSG00000141458.12|NPC1|pc|chr18:23506183:23506642:-	0	-
#Deleted in new
chr18	23509604	23509677	ENSG00000141452.9|C18orf8|pc|chr18:23509604:23509677:+	0	+
#Partially deleted in new
chr18	23529292	23529354	ENSG00000141458.12|NPC1|pc|chr18:23529292:23529354:-	0	-
#Deleted in new
chr18	23576480	23576947	ENSG00000141458.12|NPC1|pc|chr18:23576480:23576947:-	0	-
#Deleted in new
chr18	23609223	23609291	ENSG00000154065.16|ANKRD29|pc|chr18:23609223:23609291:-	0	-
#Deleted in new
chr18	23618540	23618788	ENSG00000154065.16|ANKRD29|pc|chr18:23618540:23618788:-	0	-
#Deleted in new
chr18	23796022	23796148	ENSG00000053747.15|LAMA3|pc|chr18:23796022:23796148:+	0	+
#Partially deleted in new
chr18	23931419	23931559	ENSG00000053747.15|LAMA3|pc|chr18:23931419:23931559:+	0	+
#Deleted in new
chr18	23982373	23982556	ENSG00000265752.2|AC010754.1|lncRNA|chr18:23982373:23982556:-	0	-
#Deleted in new
chr18	24000388	24000562	ENSG00000264745.1|TTC39C-AS1|lncRNA|chr18:24000388:24000562:-	0	-
#Deleted in new
chr18	24001564	24001659	ENSG00000264745.1|TTC39C-AS1|lncRNA|chr18:24001564:24001659:-	0	-
#Deleted in new
chr18	24006366	24006486	ENSG00000264745.1|TTC39C-AS1|lncRNA|chr18:24006366:24006486:-	0	-
#Deleted in new
chr18	24076793	24077259	ENSG00000265204.1|AC090772.2|lncRNA|chr18:24076793:24077259:-	0	-
#Deleted in new
chr18	24099222	24099320	ENSG00000265204.1|AC090772.2|lncRNA|chr18:24099222:24099320:-	0	-
#Deleted in new
chr18	24114272	24114355	ENSG00000168234.12|TTC39C|pc|chr18:24114272:24114355:+	0	+
#Partially deleted in new
chr18	24114339	24114370	ENSG00000168234.12|TTC39C|pc|chr18:24114339:24114370:+	0	+
#Partially deleted in new
chr18	24114553	24115032	ENSG00000168234.12|TTC39C|pc|chr18:24114553:24115032:+	0	+
#Deleted in new
chr18	24120991	24121003	ENSG00000264924.1|AC090772.1|lncRNA|chr18:24120991:24121003:-	0	-
#Deleted in new
chr18	24139483	24139519	ENSG00000154040.20|CABYR|pc|chr18:24139483:24139519:+	0	+
#Deleted in new
chr18	24139624	24139798	ENSG00000154040.20|CABYR|pc|chr18:24139624:24139798:+	0	+
#Deleted in new
chr18	24139950	24140267	ENSG00000154040.20|CABYR|pc|chr18:24139950:24140267:+	0	+
#Deleted in new
chr18	24148574	24148725	ENSG00000154040.20|CABYR|pc|chr18:24148574:24148725:+	0	+
#Deleted in new
chr18	24150537	24150624	ENSG00000154040.20|CABYR|pc|chr18:24150537:24150624:+	0	+
#Deleted in new
chr18	24150537	24150631	ENSG00000154040.20|CABYR|pc|chr18:24150537:24150631:+	0	+
#Deleted in new
chr18	24152643	24152822	ENSG00000154040.20|CABYR|pc|chr18:24152643:24152822:+	0	+
#Deleted in new
chr18	24152657	24152726	ENSG00000154040.20|CABYR|pc|chr18:24152657:24152726:+	0	+
#Deleted in new
chr18	24160777	24160877	ENSG00000265750.1|AC090772.3|lncRNA|chr18:24160777:24160877:-	0	-
#Deleted in new
chr18	24195959	24195965	ENSG00000141447.17|OSBPL1A|pc|chr18:24195959:24195965:-	0	-
#Deleted in new
chr18	24301292	24301324	ENSG00000141447.17|OSBPL1A|pc|chr18:24301292:24301324:-	0	-
#Deleted in new
chr18	24302388	24302751	ENSG00000141447.17|OSBPL1A|pc|chr18:24302388:24302751:-	0	-
#Deleted in new
chr18	24347657	24347838	ENSG00000141447.17|OSBPL1A|pc|chr18:24347657:24347838:-	0	-
#Deleted in new
chr18	24347664	24347838	ENSG00000141447.17|OSBPL1A|pc|chr18:24347664:24347838:-	0	-
#Deleted in new
chr18	24357124	24358511	ENSG00000141447.17|OSBPL1A|pc|chr18:24357124:24358511:-	0	-
#Deleted in new
chr18	24364786	24364871	ENSG00000264365.1|AC023983.1|lncRNA|chr18:24364786:24364871:+	0	+
#Partially deleted in new
chr18	24426646	24428047	ENSG00000154059.9|IMPACT|pc|chr18:24426646:24428047:+	0	+
#Deleted in new
chr18	24435363	24435546	ENSG00000265094.1|AC007922.2|lncRNA|chr18:24435363:24435546:+	0	+
#Deleted in new
chr18	24439540	24439638	ENSG00000265094.1|AC007922.2|lncRNA|chr18:24439540:24439638:+	0	+
#Deleted in new
chr18	24489374	24489402	ENSG00000264695.1|AC007922.1|lncRNA|chr18:24489374:24489402:+	0	+
#Deleted in new
chr18	24490649	24491080	ENSG00000264695.1|AC007922.1|lncRNA|chr18:24490649:24491080:+	0	+
#Deleted in new
chr18	24517961	24518006	ENSG00000266489.1|AC007922.3|lncRNA|chr18:24517961:24518006:-	0	-
#Deleted in new
chr18	24674274	24674348	ENSG00000263553.1|AC022884.1|lncRNA|chr18:24674274:24674348:+	0	+
#Deleted in new
chr18	24744799	24744878	ENSG00000266573.5|AC018697.1|lncRNA|chr18:24744799:24744878:+	0	+
#Deleted in new
chr1	825137	825552	ENSG00000228794.8|LINC01128|lncRNA|chr1:825137:825552:+	0	+
#Deleted in new
chr18	25273469	25273595	ENSG00000198795.10|ZNF521|pc|chr18:25273469:25273595:-	0	-
#Split in new
chr18	2552694	2555038	ENSG00000101574.14|METTL4|pc|chr18:2552694:2555038:-	0	-
#Deleted in new
chr18	2561171	2562220	ENSG00000266783.1|AP005136.2|lncRNA|chr18:2561171:2562220:-	0	-
#Deleted in new
chr18	2571148	2571233	ENSG00000101574.14|METTL4|pc|chr18:2571148:2571233:-	0	-
#Deleted in new
chr18	2577235	2577357	ENSG00000080986.12|NDC80|pc|chr18:2577235:2577357:+	0	+
#Deleted in new
chr18	2582101	2582879	ENSG00000080986.12|NDC80|pc|chr18:2582101:2582879:+	0	+
#Partially deleted in new
chr18	260185	261162	ENSG00000079134.11|THOC1|pc|chr18:260185:261162:-	0	-
#Deleted in new
chr18	26023612	26023632	ENSG00000141380.13|SS18|pc|chr18:26023612:26023632:-	0	-
#Deleted in new
chr18	26064831	26064871	ENSG00000141380.13|SS18|pc|chr18:26064831:26064871:-	0	-
#Deleted in new
chr18	26068259	26068557	ENSG00000141380.13|SS18|pc|chr18:26068259:26068557:-	0	-
#Deleted in new
chr18	26068493	26068557	ENSG00000141380.13|SS18|pc|chr18:26068493:26068557:-	0	-
#Deleted in new
chr18	260717	260759	ENSG00000079134.11|THOC1|pc|chr18:260717:260759:-	0	-
#Deleted in new
chr18	26080304	26080423	ENSG00000141380.13|SS18|pc|chr18:26080304:26080423:-	0	-
#Deleted in new
chr18	26080370	26080423	ENSG00000141380.13|SS18|pc|chr18:26080370:26080423:-	0	-
#Deleted in new
chr18	26081224	26081365	ENSG00000141380.13|SS18|pc|chr18:26081224:26081365:-	0	-
#Deleted in new
chr18	26085922	26086027	ENSG00000141380.13|SS18|pc|chr18:26085922:26086027:-	0	-
#Deleted in new
chr18	26140044	26140109	ENSG00000154611.14|PSMA8|pc|chr18:26140044:26140109:+	0	+
#Deleted in new
chr18	26140085	26140109	ENSG00000154611.14|PSMA8|pc|chr18:26140085:26140109:+	0	+
#Deleted in new
chr18	2614953	2615314	ENSG00000080986.12|NDC80|pc|chr18:2614953:2615314:+	0	+
#Deleted in new
chr1	826205	827522	ENSG00000225880.5|LINC00115|lncRNA|chr1:826205:827522:-	0	-
#Partially deleted in new
chr18	26266769	26267409	ENSG00000266237.1|AC121320.1|lncRNA|chr18:26266769:26267409:+	0	+
#Deleted in new
chr18	26295194	26295314	ENSG00000141384.12|TAF4B|pc|chr18:26295194:26295314:+	0	+
#Deleted in new
chr18	26581161	26581729	ENSG00000134504.12|KCTD1|pc|chr18:26581161:26581729:-	0	-
#Deleted in new
chr18	26640310	26640344	ENSG00000134504.12|KCTD1|pc|chr18:26640310:26640344:-	0	-
#Partially deleted in new
chr18	26687620	26689971	ENSG00000265369.3|PCAT18|lncRNA|chr18:26687620:26689971:-	0	-
#Deleted in new
chr18	26688110	26688154	ENSG00000263677.1|AC012588.1|lncRNA|chr18:26688110:26688154:+	0	+
#Deleted in new
chr18	26764138	26764331	ENSG00000260372.6|AQP4-AS1|lncRNA|chr18:26764138:26764331:+	0	+
#Deleted in new
chr18	26764215	26764331	ENSG00000260372.6|AQP4-AS1|lncRNA|chr18:26764215:26764331:+	0	+
#Deleted in new
chr18	26822812	26822991	ENSG00000263382.1|AC018371.1|lncRNA|chr18:26822812:26822991:-	0	-
#Deleted in new
chr18	26823518	26823979	ENSG00000263382.1|AC018371.1|lncRNA|chr18:26823518:26823979:-	0	-
#Deleted in new
chr1	826831	826923	ENSG00000228794.8|LINC01128|lncRNA|chr1:826831:826923:+	0	+
#Deleted in new
chr18	26892870	26892992	ENSG00000260372.6|AQP4-AS1|lncRNA|chr18:26892870:26892992:+	0	+
#Deleted in new
chr18	2691673	2691880	ENSG00000266049.1|AP001011.1|lncRNA|chr18:2691673:2691880:-	0	-
#Deleted in new
chr18	2702216	2702292	ENSG00000101596.14|SMCHD1|pc|chr18:2702216:2702292:+	0	+
#Deleted in new
chr18	27225741	27225961	ENSG00000265374.1|LINC01908|lncRNA|chr18:27225741:27225961:+	0	+
#Partially deleted in new
chr18	27336378	27337187	ENSG00000264151.5|AC090403.1|lncRNA|chr18:27336378:27337187:-	0	-
#Partially deleted in new
chr18	27336692	27337187	ENSG00000264151.5|AC090403.1|lncRNA|chr18:27336692:27337187:-	0	-
#Partially deleted in new
chr18	27336990	27337187	ENSG00000264151.5|AC090403.1|lncRNA|chr18:27336990:27337187:-	0	-
#Partially deleted in new
chr18	27342502	27342684	ENSG00000264151.5|AC090403.1|lncRNA|chr18:27342502:27342684:-	0	-
#Partially deleted in new
chr18	27342502	27342690	ENSG00000264151.5|AC090403.1|lncRNA|chr18:27342502:27342690:-	0	-
#Deleted in new
chr18	27343251	27343311	ENSG00000264790.1|AC021382.2|lncRNA|chr18:27343251:27343311:+	0	+
#Deleted in new
chr18	27344220	27344342	ENSG00000264790.1|AC021382.2|lncRNA|chr18:27344220:27344342:+	0	+
#Deleted in new
chr18	27397951	27397985	ENSG00000263611.1|AC068408.2|lncRNA|chr18:27397951:27397985:+	0	+
#Deleted in new
chr18	27501678	27501865	ENSG00000264151.5|AC090403.1|lncRNA|chr18:27501678:27501865:-	0	-
#Deleted in new
chr18	27581970	27582015	ENSG00000264151.5|AC090403.1|lncRNA|chr18:27581970:27582015:-	0	-
#Deleted in new
chr18	27592707	27592874	ENSG00000264151.5|AC090403.1|lncRNA|chr18:27592707:27592874:-	0	-
#Deleted in new
chr1	827607	827775	ENSG00000228794.8|LINC01128|lncRNA|chr1:827607:827775:+	0	+
#Deleted in new
chr1	827656	827775	ENSG00000228794.8|LINC01128|lncRNA|chr1:827656:827775:+	0	+
#Deleted in new
chr1	827660	827775	ENSG00000228794.8|LINC01128|lncRNA|chr1:827660:827775:+	0	+
#Deleted in new
chr1	827666	827775	ENSG00000228794.8|LINC01128|lncRNA|chr1:827666:827775:+	0	+
#Deleted in new
chr1	827668	827775	ENSG00000228794.8|LINC01128|lncRNA|chr1:827668:827775:+	0	+
#Deleted in new
chr1	827672	827775	ENSG00000228794.8|LINC01128|lncRNA|chr1:827672:827775:+	0	+
#Deleted in new
chr1	827698	827775	ENSG00000228794.8|LINC01128|lncRNA|chr1:827698:827775:+	0	+
#Deleted in new
chr1	827699	827775	ENSG00000228794.8|LINC01128|lncRNA|chr1:827699:827775:+	0	+
#Deleted in new
chr1	827720	827775	ENSG00000228794.8|LINC01128|lncRNA|chr1:827720:827775:+	0	+
#Deleted in new
chr1	827820	827853	ENSG00000228794.8|LINC01128|lncRNA|chr1:827820:827853:+	0	+
#Deleted in new
chr18	2784844	2784987	ENSG00000101596.14|SMCHD1|pc|chr18:2784844:2784987:+	0	+
#Deleted in new
chr18	2800522	2801263	ENSG00000101596.14|SMCHD1|pc|chr18:2800522:2801263:+	0	+
#Deleted in new
chr18	2808454	2808516	ENSG00000266049.1|AP001011.1|lncRNA|chr18:2808454:2808516:-	0	-
#Deleted in new
chr18	2822354	2822571	ENSG00000266049.1|AP001011.1|lncRNA|chr18:2822354:2822571:-	0	-
#Deleted in new
chr18	2832615	2832923	ENSG00000266049.1|AP001011.1|lncRNA|chr18:2832615:2832923:-	0	-
#Deleted in new
chr18	2832615	2833065	ENSG00000266049.1|AP001011.1|lncRNA|chr18:2832615:2833065:-	0	-
#Deleted in new
chr18	28785067	28785109	ENSG00000265994.1|AC023932.1|lncRNA|chr18:28785067:28785109:+	0	+
#Deleted in new
chr1	829002	829104	ENSG00000228794.8|LINC01128|lncRNA|chr1:829002:829104:+	0	+
#Deleted in new
chr1	82903182	82903823	ENSG00000230817.5|LINC01362|lncRNA|chr1:82903182:82903823:+	0	+
#Deleted in new
chr1	82907467	82907582	ENSG00000230817.5|LINC01362|lncRNA|chr1:82907467:82907582:+	0	+
#Deleted in new
chr1	82907561	82907582	ENSG00000230817.5|LINC01362|lncRNA|chr1:82907561:82907582:+	0	+
#Deleted in new
chr18	29278508	29278663	ENSG00000265980.1|AC074237.1|lncRNA|chr18:29278508:29278663:-	0	-
#Deleted in new
chr18	29281357	29281593	ENSG00000265980.1|AC074237.1|lncRNA|chr18:29281357:29281593:-	0	-
#Deleted in new
chr18	29361883	29361963	ENSG00000265980.1|AC074237.1|lncRNA|chr18:29361883:29361963:-	0	-
#Partially deleted in new
chr18	2950261	2950597	ENSG00000265907.1|AP000919.2|lncRNA|chr18:2950261:2950597:+	0	+
#Partially deleted in new
chr18	2950261	2950678	ENSG00000265907.1|AP000919.2|lncRNA|chr18:2950261:2950678:+	0	+
#Deleted in new
chr18	29518258	29518349	ENSG00000264587.5|AC117569.1|lncRNA|chr18:29518258:29518349:+	0	+
#Deleted in new
chr18	29519520	29519583	ENSG00000264587.5|AC117569.1|lncRNA|chr18:29519520:29519583:+	0	+
#Deleted in new
chr18	29528301	29528343	ENSG00000264587.5|AC117569.1|lncRNA|chr18:29528301:29528343:+	0	+
#Deleted in new
chr18	29528302	29528343	ENSG00000264587.5|AC117569.1|lncRNA|chr18:29528302:29528343:+	0	+
#Deleted in new
chr18	29530599	29530735	ENSG00000264587.5|AC117569.1|lncRNA|chr18:29530599:29530735:+	0	+
#Deleted in new
chr18	29537362	29537500	ENSG00000264587.5|AC117569.1|lncRNA|chr18:29537362:29537500:+	0	+
#Deleted in new
chr18	29538238	29538371	ENSG00000264587.5|AC117569.1|lncRNA|chr18:29538238:29538371:+	0	+
#Deleted in new
chr18	29538238	29538393	ENSG00000264587.5|AC117569.1|lncRNA|chr18:29538238:29538393:+	0	+
#Deleted in new
chr18	29547994	29548241	ENSG00000264587.5|AC117569.1|lncRNA|chr18:29547994:29548241:+	0	+
#Deleted in new
chr18	2967017	2967042	ENSG00000266397.1|AP000919.3|lncRNA|chr18:2967017:2967042:+	0	+
#Deleted in new
chr18	2967571	2967669	ENSG00000266397.1|AP000919.3|lncRNA|chr18:2967571:2967669:+	0	+
#Partially deleted in new
chr1	82973881	82975118	ENSG00000236268.5|LINC01361|lncRNA|chr1:82973881:82975118:-	0	-
#Deleted in new
chr1	82973928	82975118	ENSG00000236268.5|LINC01361|lncRNA|chr1:82973928:82975118:-	0	-
#Deleted in new
chr18	2977082	2977185	ENSG00000101577.9|LPIN2|pc|chr18:2977082:2977185:-	0	-
#Deleted in new
chr18	2979011	2979119	ENSG00000266397.1|AP000919.3|lncRNA|chr18:2979011:2979119:+	0	+
#Deleted in new
chr1	82996714	82996776	ENSG00000230817.5|LINC01362|lncRNA|chr1:82996714:82996776:+	0	+
#Deleted in new
chr1	82997472	82997561	ENSG00000230817.5|LINC01362|lncRNA|chr1:82997472:82997561:+	0	+
#Deleted in new
chr1	82997472	82997589	ENSG00000230817.5|LINC01362|lncRNA|chr1:82997472:82997589:+	0	+
#Deleted in new
chr18	30713274	30713440	ENSG00000266196.1|AC090506.1|lncRNA|chr18:30713274:30713440:+	0	+
#Deleted in new
chr18	30713880	30714286	ENSG00000266196.1|AC090506.1|lncRNA|chr18:30713880:30714286:+	0	+
#Deleted in new
chr1	83076140	83076224	ENSG00000230817.5|LINC01362|lncRNA|chr1:83076140:83076224:+	0	+
#Deleted in new
chr18	30780005	30780424	ENSG00000279734.1|AC090506.2|lncRNA|chr18:30780005:30780424:+	0	+
#Deleted in new
chr18	30980879	30980917	ENSG00000265670.1|AC016382.1|lncRNA|chr18:30980879:30980917:-	0	-
#Deleted in new
chr18	31347667	31347820	ENSG00000266729.5|DSG1-AS1|lncRNA|chr18:31347667:31347820:-	0	-
#Deleted in new
chr18	31347719	31347820	ENSG00000266729.5|DSG1-AS1|lncRNA|chr18:31347719:31347820:-	0	-
#Deleted in new
chr18	31353899	31353936	ENSG00000266729.5|DSG1-AS1|lncRNA|chr18:31353899:31353936:-	0	-
#Deleted in new
chr18	31364148	31364285	ENSG00000266729.5|DSG1-AS1|lncRNA|chr18:31364148:31364285:-	0	-
#Deleted in new
chr18	31496644	31496852	ENSG00000266521.1|AC021549.1|lncRNA|chr18:31496644:31496852:-	0	-
#Deleted in new
chr18	31550037	31550397	ENSG00000264859.5|DSG2-AS1|lncRNA|chr18:31550037:31550397:-	0	-
#Deleted in new
chr18	31550131	31550359	ENSG00000264859.5|DSG2-AS1|lncRNA|chr18:31550131:31550359:-	0	-
#Deleted in new
chr18	31554641	31554715	ENSG00000264859.5|DSG2-AS1|lncRNA|chr18:31554641:31554715:-	0	-
#Partially deleted in new
chr18	31555962	31556911	ENSG00000264859.5|DSG2-AS1|lncRNA|chr18:31555962:31556911:-	0	-
#Deleted in new
chr18	31556556	31556905	ENSG00000264859.5|DSG2-AS1|lncRNA|chr18:31556556:31556905:-	0	-
#Deleted in new
chr18	31597139	31597145	ENSG00000118271.9|TTR|pc|chr18:31597139:31597145:+	0	+
#Deleted in new
chr18	31597255	31597279	ENSG00000118271.9|TTR|pc|chr18:31597255:31597279:+	0	+
#Deleted in new
chr1	831604	831677	ENSG00000228794.8|LINC01128|lncRNA|chr1:831604:831677:+	0	+
#Deleted in new
chr1	83160605	83160666	ENSG00000230817.5|LINC01362|lncRNA|chr1:83160605:83160666:+	0	+
#Deleted in new
chr1	83166703	83166815	ENSG00000230817.5|LINC01362|lncRNA|chr1:83166703:83166815:+	0	+
#Deleted in new
chr18	316736	316986	ENSG00000264514.1|AP000915.1|lncRNA|chr18:316736:316986:+	0	+
#Deleted in new
chr18	316739	316963	ENSG00000158270.11|COLEC12|pc|chr18:316739:316963:-	0	-
#Deleted in new
chr18	317098	317366	ENSG00000158270.11|COLEC12|pc|chr18:317098:317366:-	0	-
#Deleted in new
chr18	31845047	31845178	ENSG00000263924.1|AC022960.1|lncRNA|chr18:31845047:31845178:+	0	+
#Partially deleted in new
chr18	31895744	31896410	ENSG00000276282.1|AC022960.2|lncRNA|chr18:31895744:31896410:-	0	-
#Deleted in new
chr18	3190396	3190516	ENSG00000265399.1|AP005329.2|lncRNA|chr18:3190396:3190516:+	0	+
#Deleted in new
chr18	31926467	31926605	ENSG00000153339.13|TRAPPC8|pc|chr18:31926467:31926605:-	0	-
#Deleted in new
chr18	31939380	31939462	ENSG00000153339.13|TRAPPC8|pc|chr18:31939380:31939462:-	0	-
#Deleted in new
chr18	31939394	31939744	ENSG00000153339.13|TRAPPC8|pc|chr18:31939394:31939744:-	0	-
#Deleted in new
chr18	31953049	31953136	ENSG00000153339.13|TRAPPC8|pc|chr18:31953049:31953136:-	0	-
#Deleted in new
chr18	32031034	32031359	ENSG00000274275.1|AC009831.4|lncRNA|chr18:32031034:32031359:+	0	+
#Deleted in new
chr18	32109458	32109512	ENSG00000134758.13|RNF138|pc|chr18:32109458:32109512:+	0	+
#Deleted in new
chr18	32122399	32122420	ENSG00000263393.1|AC011825.2|lncRNA|chr18:32122399:32122420:-	0	-
#Deleted in new
chr18	32136367	32136460	ENSG00000141441.15|GAREM1|pc|chr18:32136367:32136460:-	0	-
#Deleted in new
chr18	32185068	32185176	ENSG00000141434.11|MEP1B|pc|chr18:32185068:32185176:+	0	+
#Deleted in new
chr18	32245945	32246136	ENSG00000263904.1|AC015563.1|lncRNA|chr18:32245945:32246136:-	0	-
#Deleted in new
chr18	32248755	32249032	ENSG00000263904.1|AC015563.1|lncRNA|chr18:32248755:32249032:-	0	-
#Deleted in new
chr18	32290264	32290340	ENSG00000264982.1|AC015563.2|lncRNA|chr18:32290264:32290340:+	0	+
#Deleted in new
chr18	3236440	3236538	ENSG00000265399.1|AP005329.2|lncRNA|chr18:3236440:3236538:+	0	+
#Partially deleted in new
chr18	3249561	3249723	ENSG00000101608.12|MYL12A|pc|chr18:3249561:3249723:+	0	+
#Deleted in new
chr18	3255523	3255605	ENSG00000101608.12|MYL12A|pc|chr18:3255523:3255605:+	0	+
#Deleted in new
chr18	32581527	32581576	ENSG00000263688.1|AC025887.1|lncRNA|chr18:32581527:32581576:+	0	+
#Deleted in new
chr18	32912832	32912964	ENSG00000263765.5|AC090371.2|lncRNA|chr18:32912832:32912964:+	0	+
#Deleted in new
chr18	32954074	32954086	ENSG00000263450.1|AC090371.1|lncRNA|chr18:32954074:32954086:+	0	+
#Deleted in new
chr18	32954505	32954647	ENSG00000263450.1|AC090371.1|lncRNA|chr18:32954505:32954647:+	0	+
#Deleted in new
chr18	33136026	33136077	ENSG00000166960.16|CCDC178|pc|chr18:33136026:33136077:-	0	-
#Deleted in new
chr18	33440472	33440543	ENSG00000166960.16|CCDC178|pc|chr18:33440472:33440543:-	0	-
#Deleted in new
chr18	33440652	33440693	ENSG00000166960.16|CCDC178|pc|chr18:33440652:33440693:-	0	-
#Deleted in new
chr18	33440652	33440721	ENSG00000166960.16|CCDC178|pc|chr18:33440652:33440721:-	0	-
#Deleted in new
chr18	33440950	33441101	ENSG00000166960.16|CCDC178|pc|chr18:33440950:33441101:-	0	-
#Deleted in new
chr18	3347775	3347988	ENSG00000259256.1|LINC01895|lncRNA|chr18:3347775:3347988:-	0	-
#Partially deleted in new
chr18	33552122	33554190	ENSG00000267642.1|AC091198.1|lncRNA|chr18:33552122:33554190:-	0	-
#Deleted in new
chr1	8336078	8336109	ENSG00000162426.14|SLC45A1|pc|chr1:8336078:8336109:+	0	+
#Deleted in new
chr18	33649576	33649617	ENSG00000141431.10|ASXL3|pc|chr18:33649576:33649617:+	0	+
#Deleted in new
chr18	3412203	3412254	ENSG00000177426.20|TGIF1|pc|chr18:3412203:3412254:+	0	+
#Deleted in new
chr18	3412853	3413049	ENSG00000177426.20|TGIF1|pc|chr18:3412853:3413049:+	0	+
#Deleted in new
chr18	3412855	3413049	ENSG00000177426.20|TGIF1|pc|chr18:3412855:3413049:+	0	+
#Deleted in new
chr18	3418142	3418215	ENSG00000177426.20|TGIF1|pc|chr18:3418142:3418215:+	0	+
#Deleted in new
chr18	3418142	3418846	ENSG00000177426.20|TGIF1|pc|chr18:3418142:3418846:+	0	+
#Deleted in new
chr18	34183517	34183626	ENSG00000101746.15|NOL4|pc|chr18:34183517:34183626:-	0	-
#Deleted in new
chr18	34504042	34504157	ENSG00000134769.21|DTNA|pc|chr18:34504042:34504157:+	0	+
#Partially deleted in new
chr18	3455151	3455258	ENSG00000177426.20|TGIF1|pc|chr18:3455151:3455258:+	0	+
#Deleted in new
chr18	34557978	34558135	ENSG00000134769.21|DTNA|pc|chr18:34557978:34558135:+	0	+
#Deleted in new
chr18	3472842	3473203	ENSG00000266835.5|GAPLINC|lncRNA|chr18:3472842:3473203:+	0	+
#Deleted in new
chr18	3473953	3474142	ENSG00000266835.5|GAPLINC|lncRNA|chr18:3473953:3474142:+	0	+
#Deleted in new
chr18	34759932	34760063	ENSG00000268873.1|AC022601.1|lncRNA|chr18:34759932:34760063:-	0	-
#Deleted in new
chr18	34767542	34767663	ENSG00000268873.1|AC022601.1|lncRNA|chr18:34767542:34767663:-	0	-
#Deleted in new
chr18	3478755	3478927	ENSG00000266835.5|GAPLINC|lncRNA|chr18:3478755:3478927:+	0	+
#Deleted in new
chr18	3478755	3478976	ENSG00000266835.5|GAPLINC|lncRNA|chr18:3478755:3478976:+	0	+
#Deleted in new
chr18	3478755	3478978	ENSG00000266835.5|GAPLINC|lncRNA|chr18:3478755:3478978:+	0	+
#Partially deleted in new
chr18	34822361	34822566	ENSG00000134769.21|DTNA|pc|chr18:34822361:34822566:+	0	+
#Deleted in new
chr18	34892012	34892535	ENSG00000278464.1|AC068506.1|lncRNA|chr18:34892012:34892535:-	0	-
#Deleted in new
chr18	34892019	34892450	ENSG00000278464.1|AC068506.1|lncRNA|chr18:34892019:34892450:-	0	-
#Deleted in new
chr18	34892075	34892450	ENSG00000278464.1|AC068506.1|lncRNA|chr18:34892075:34892450:-	0	-
#Deleted in new
chr18	34902852	34902885	ENSG00000278464.1|AC068506.1|lncRNA|chr18:34902852:34902885:-	0	-
#Deleted in new
chr18	34988592	34988839	ENSG00000166974.12|MAPRE2|pc|chr18:34988592:34988839:+	0	+
#Deleted in new
chr18	34988592	34988848	ENSG00000166974.12|MAPRE2|pc|chr18:34988592:34988848:+	0	+
#Deleted in new
chr18	35082008	35082242	ENSG00000280096.1|AC015967.2|lncRNA|chr18:35082008:35082242:+	0	+
#Deleted in new
chr18	35241029	35241109	ENSG00000186812.12|ZNF397|pc|chr18:35241029:35241109:+	0	+
#Deleted in new
chr18	35241035	35241071	ENSG00000186812.12|ZNF397|pc|chr18:35241035:35241071:+	0	+
#Deleted in new
chr18	35241036	35241109	ENSG00000186812.12|ZNF397|pc|chr18:35241036:35241109:+	0	+
#Deleted in new
chr18	35241050	35241109	ENSG00000186812.12|ZNF397|pc|chr18:35241050:35241109:+	0	+
#Deleted in new
chr18	35241054	35241109	ENSG00000186812.12|ZNF397|pc|chr18:35241054:35241109:+	0	+
#Partially deleted in new
chr18	35241056	35241690	ENSG00000186812.12|ZNF397|pc|chr18:35241056:35241690:+	0	+
#Deleted in new
chr18	35254961	35254988	ENSG00000186814.13|ZSCAN30|pc|chr18:35254961:35254988:-	0	-
#Deleted in new
chr18	35257039	35257512	ENSG00000279989.1|AC011815.3|lncRNA|chr18:35257039:35257512:+	0	+
#Deleted in new
chr18	35257927	35258049	ENSG00000186812.12|ZNF397|pc|chr18:35257927:35258049:+	0	+
#Deleted in new
chr18	35257927	35258279	ENSG00000186812.12|ZNF397|pc|chr18:35257927:35258279:+	0	+
#Deleted in new
chr18	35257927	35258394	ENSG00000186812.12|ZNF397|pc|chr18:35257927:35258394:+	0	+
#Deleted in new
chr18	35257927	35259227	ENSG00000186812.12|ZNF397|pc|chr18:35257927:35259227:+	0	+
#Deleted in new
chr18	35258828	35258866	ENSG00000186814.13|ZSCAN30|pc|chr18:35258828:35258866:-	0	-
#Deleted in new
chr18	35259671	35259703	ENSG00000186814.13|ZSCAN30|pc|chr18:35259671:35259703:-	0	-
#Deleted in new
chr18	35260105	35260152	ENSG00000186814.13|ZSCAN30|pc|chr18:35260105:35260152:-	0	-
#Deleted in new
chr18	35260374	35260407	ENSG00000186814.13|ZSCAN30|pc|chr18:35260374:35260407:-	0	-
#Deleted in new
chr18	35266692	35267133	ENSG00000186812.12|ZNF397|pc|chr18:35266692:35267133:+	0	+
#Deleted in new
chr18	35267475	35267679	ENSG00000186814.13|ZSCAN30|pc|chr18:35267475:35267679:-	0	-
#Deleted in new
chr18	35267475	35267682	ENSG00000186814.13|ZSCAN30|pc|chr18:35267475:35267682:-	0	-
#Deleted in new
chr18	35267877	35267948	ENSG00000186814.13|ZSCAN30|pc|chr18:35267877:35267948:-	0	-
#Deleted in new
chr18	35268217	35270238	ENSG00000274184.1|AC011815.2|lncRNA|chr18:35268217:35270238:+	0	+
#Deleted in new
chr18	35280866	35285177	ENSG00000268573.1|AC011815.1|lncRNA|chr18:35280866:35285177:-	0	-
#Deleted in new
chr18	35289344	35289823	ENSG00000186814.13|ZSCAN30|pc|chr18:35289344:35289823:-	0	-
#Deleted in new
chr18	35317395	35317848	ENSG00000274918.1|AC116447.1|lncRNA|chr18:35317395:35317848:+	0	+
#Deleted in new
chr18	35342474	35342675	ENSG00000172466.15|ZNF24|pc|chr18:35342474:35342675:-	0	-
#Deleted in new
chr18	35366696	35368445	ENSG00000186496.10|ZNF396|pc|chr18:35366696:35368445:-	0	-
#Split in new
chr18	35371810	35374365	ENSG00000186496.10|ZNF396|pc|chr18:35371810:35374365:-	0	-
#Partially deleted in new
chr18	35372829	35373600	ENSG00000186496.10|ZNF396|pc|chr18:35372829:35373600:-	0	-
#Duplicated in new
chr18	35373875	35374364	ENSG00000186496.10|ZNF396|pc|chr18:35373875:35374364:-	0	-
#Duplicated in new
chr18	35373898	35374364	ENSG00000186496.10|ZNF396|pc|chr18:35373898:35374364:-	0	-
#Partially deleted in new
chr18	35374469	35374823	ENSG00000186496.10|ZNF396|pc|chr18:35374469:35374823:-	0	-
#Deleted in new
chr18	35377277	35377310	ENSG00000186496.10|ZNF396|pc|chr18:35377277:35377310:-	0	-
#Deleted in new
chr18	35377277	35377337	ENSG00000186496.10|ZNF396|pc|chr18:35377277:35377337:-	0	-
#Deleted in new
chr18	35403995	35406528	ENSG00000275512.1|AC007998.4|lncRNA|chr18:35403995:35406528:-	0	-
#Deleted in new
chr18	35443868	35444022	ENSG00000267583.5|AC007998.3|lncRNA|chr18:35443868:35444022:-	0	-
#Deleted in new
chr18	35443870	35444022	ENSG00000267140.1|AC007998.2|pc|chr18:35443870:35444022:-	0	-
#Deleted in new
chr18	35445742	35445900	ENSG00000267583.5|AC007998.3|lncRNA|chr18:35445742:35445900:-	0	-
#Deleted in new
chr18	35446874	35446955	ENSG00000267140.1|AC007998.2|pc|chr18:35446874:35446955:-	0	-
#Deleted in new
chr18	35446874	35446955	ENSG00000267583.5|AC007998.3|lncRNA|chr18:35446874:35446955:-	0	-
#Deleted in new
chr18	35446907	35446955	ENSG00000267583.5|AC007998.3|lncRNA|chr18:35446907:35446955:-	0	-
#Deleted in new
chr18	35447484	35447542	ENSG00000267583.5|AC007998.3|lncRNA|chr18:35447484:35447542:-	0	-
#Deleted in new
chr18	35452229	35454968	ENSG00000153391.15|INO80C|pc|chr18:35452229:35454968:-	0	-
#Deleted in new
chr18	35466623	35466752	ENSG00000267583.5|AC007998.3|lncRNA|chr18:35466623:35466752:-	0	-
#Deleted in new
chr18	35466623	35467081	ENSG00000267583.5|AC007998.3|lncRNA|chr18:35466623:35467081:-	0	-
#Deleted in new
chr18	35466623	35467088	ENSG00000267583.5|AC007998.3|lncRNA|chr18:35466623:35467088:-	0	-
#Deleted in new
chr18	35483430	35483667	ENSG00000279074.1|AC007998.5|lncRNA|chr18:35483430:35483667:-	0	-
#Deleted in new
chr18	35487385	35487439	ENSG00000153391.15|INO80C|pc|chr18:35487385:35487439:-	0	-
#Deleted in new
chr18	35487385	35487470	ENSG00000153391.15|INO80C|pc|chr18:35487385:35487470:-	0	-
#Deleted in new
chr18	35487385	35487823	ENSG00000153391.15|INO80C|pc|chr18:35487385:35487823:-	0	-
#Deleted in new
chr18	35489077	35489385	ENSG00000153391.15|INO80C|pc|chr18:35489077:35489385:-	0	-
#Deleted in new
chr18	35489331	35489385	ENSG00000153391.15|INO80C|pc|chr18:35489331:35489385:-	0	-
#Deleted in new
chr18	35496774	35496882	ENSG00000153391.15|INO80C|pc|chr18:35496774:35496882:-	0	-
#Deleted in new
chr18	35497505	35497599	ENSG00000153391.15|INO80C|pc|chr18:35497505:35497599:-	0	-
#Partially deleted in new
chr18	35497505	35497649	ENSG00000153391.15|INO80C|pc|chr18:35497505:35497649:-	0	-
#Deleted in new
chr18	35595900	35597599	ENSG00000266965.1|AC090220.1|lncRNA|chr18:35595900:35597599:+	0	+
#Deleted in new
chr18	35659857	35659930	ENSG00000141429.13|GALNT1|pc|chr18:35659857:35659930:+	0	+
#Deleted in new
chr18	35716369	35717978	ENSG00000267397.1|AC090229.1|lncRNA|chr18:35716369:35717978:+	0	+
#Partially deleted in new
chr1	83575775	83578672	ENSG00000233008.5|LINC01725|lncRNA|chr1:83575775:83578672:-	0	-
#Deleted in new
chr18	35951802	35952037	ENSG00000267627.5|AC118757.1|lncRNA|chr18:35951802:35952037:-	0	-
#Deleted in new
chr18	35952677	35952799	ENSG00000267627.5|AC118757.1|lncRNA|chr18:35952677:35952799:-	0	-
#Deleted in new
chr18	35965744	35965840	ENSG00000267627.5|AC118757.1|lncRNA|chr18:35965744:35965840:-	0	-
#Deleted in new
chr18	35965744	35966118	ENSG00000267627.5|AC118757.1|lncRNA|chr18:35965744:35966118:-	0	-
#Deleted in new
chr18	3596578	3596675	ENSG00000177337.7|DLGAP1-AS1|lncRNA|chr18:3596578:3596675:+	0	+
#Deleted in new
chr18	3596578	3596808	ENSG00000177337.7|DLGAP1-AS1|lncRNA|chr18:3596578:3596808:+	0	+
#Partially deleted in new
chr18	3596578	3598352	ENSG00000177337.7|DLGAP1-AS1|lncRNA|chr18:3596578:3598352:+	0	+
#Deleted in new
chr18	3597175	3597228	ENSG00000177337.7|DLGAP1-AS1|lncRNA|chr18:3597175:3597228:+	0	+
#Deleted in new
chr18	3597175	3597372	ENSG00000177337.7|DLGAP1-AS1|lncRNA|chr18:3597175:3597372:+	0	+
#Partially deleted in new
chr18	35972150	35973916	ENSG00000278986.1|AC091060.1|lncRNA|chr18:35972150:35973916:+	0	+
#Deleted in new
chr18	35973591	35973648	ENSG00000141428.16|C18orf21|pc|chr18:35973591:35973648:+	0	+
#Deleted in new
chr18	35984386	35984711	ENSG00000141425.17|RPRD1A|pc|chr18:35984386:35984711:-	0	-
#Deleted in new
chr18	35984388	35984528	ENSG00000141425.17|RPRD1A|pc|chr18:35984388:35984528:-	0	-
#Deleted in new
chr18	35985337	35985386	ENSG00000141425.17|RPRD1A|pc|chr18:35985337:35985386:-	0	-
#Deleted in new
chr18	35988731	35988835	ENSG00000141425.17|RPRD1A|pc|chr18:35988731:35988835:-	0	-
#Partially deleted in new
chr18	36027183	36028190	ENSG00000141425.17|RPRD1A|pc|chr18:36027183:36028190:-	0	-
#Deleted in new
chr18	36040806	36040865	ENSG00000141425.17|RPRD1A|pc|chr18:36040806:36040865:-	0	-
#Deleted in new
chr18	36052874	36052920	ENSG00000141425.17|RPRD1A|pc|chr18:36052874:36052920:-	0	-
#Deleted in new
chr18	36062977	36063075	ENSG00000141425.17|RPRD1A|pc|chr18:36062977:36063075:-	0	-
#Deleted in new
chr18	36063992	36064424	ENSG00000141425.17|RPRD1A|pc|chr18:36063992:36064424:-	0	-
#Deleted in new
chr18	3606553	3608336	ENSG00000262001.1|DLGAP1-AS2|lncRNA|chr18:3606553:3608336:+	0	+
#Deleted in new
chr18	36137173	36137235	ENSG00000134759.13|ELP2|pc|chr18:36137173:36137235:+	0	+
#Deleted in new
chr18	36137183	36137235	ENSG00000134759.13|ELP2|pc|chr18:36137183:36137235:+	0	+
#Deleted in new
chr18	36139418	36139613	ENSG00000134759.13|ELP2|pc|chr18:36139418:36139613:+	0	+
#Deleted in new
chr18	36139661	36139760	ENSG00000134759.13|ELP2|pc|chr18:36139661:36139760:+	0	+
#Partially deleted in new
chr18	36174484	36180556	ENSG00000134759.13|ELP2|pc|chr18:36174484:36180556:+	0	+
#Deleted in new
chr18	36179995	36180390	ENSG00000260552.1|AC023043.1|lncRNA|chr18:36179995:36180390:-	0	-
#Partially deleted in new
chr18	36268532	36272157	ENSG00000075643.5|MOCOS|pc|chr18:36268532:36272157:+	0	+
#Deleted in new
chr18	3654704	3654815	ENSG00000266401.1|AP002478.1|lncRNA|chr18:3654704:3654815:+	0	+
#Deleted in new
chr18	36782984	36783131	ENSG00000134779.14|TPGS2|pc|chr18:36782984:36783131:-	0	-
#Deleted in new
chr18	36786484	36787079	ENSG00000134779.14|TPGS2|pc|chr18:36786484:36787079:-	0	-
#Deleted in new
chr18	36786572	36786982	ENSG00000134779.14|TPGS2|pc|chr18:36786572:36786982:-	0	-
#Deleted in new
chr18	36786572	36787079	ENSG00000134779.14|TPGS2|pc|chr18:36786572:36787079:-	0	-
#Deleted in new
chr18	36788692	36790151	ENSG00000134779.14|TPGS2|pc|chr18:36788692:36790151:-	0	-
#Split in new
chr18	36794105	36797050	ENSG00000134779.14|TPGS2|pc|chr18:36794105:36797050:-	0	-
#Deleted in new
chr18	3679843	3680212	ENSG00000170579.16|DLGAP1|pc|chr18:3679843:3680212:-	0	-
#Deleted in new
chr18	36817594	36817771	ENSG00000134779.14|TPGS2|pc|chr18:36817594:36817771:-	0	-
#Deleted in new
chr18	36820967	36821129	ENSG00000134779.14|TPGS2|pc|chr18:36820967:36821129:-	0	-
#Deleted in new
chr18	36823802	36823871	ENSG00000134779.14|TPGS2|pc|chr18:36823802:36823871:-	0	-
#Deleted in new
chr18	36832673	36833388	ENSG00000150477.14|KIAA1328|pc|chr18:36832673:36833388:+	0	+
#Deleted in new
chr18	36903610	36903688	ENSG00000267039.1|AC016493.1|lncRNA|chr18:36903610:36903688:-	0	-
#Deleted in new
chr18	36921060	36921207	ENSG00000267039.1|AC016493.1|lncRNA|chr18:36921060:36921207:-	0	-
#Deleted in new
chr18	36946248	36946517	ENSG00000150477.14|KIAA1328|pc|chr18:36946248:36946517:+	0	+
#Deleted in new
chr18	36954430	36954504	ENSG00000150477.14|KIAA1328|pc|chr18:36954430:36954504:+	0	+
#Deleted in new
chr18	36955814	36955852	ENSG00000150477.14|KIAA1328|pc|chr18:36955814:36955852:+	0	+
#Deleted in new
chr18	37074751	37075648	ENSG00000150477.14|KIAA1328|pc|chr18:37074751:37075648:+	0	+
#Deleted in new
chr18	3708341	3708501	ENSG00000170579.16|DLGAP1|pc|chr18:3708341:3708501:-	0	-
#Deleted in new
chr18	3708463	3708501	ENSG00000170579.16|DLGAP1|pc|chr18:3708463:3708501:-	0	-
#Partially deleted in new
chr18	37229568	37229659	ENSG00000150477.14|KIAA1328|pc|chr18:37229568:37229659:+	0	+
#Partially deleted in new
chr18	37229568	37229885	ENSG00000150477.14|KIAA1328|pc|chr18:37229568:37229885:+	0	+
#Deleted in new
chr18	37276151	37276190	ENSG00000267202.5|AC090386.1|lncRNA|chr18:37276151:37276190:+	0	+
#Deleted in new
chr18	37276151	37276400	ENSG00000267202.5|AC090386.1|lncRNA|chr18:37276151:37276400:+	0	+
#Deleted in new
chr18	37276521	37276572	ENSG00000267202.5|AC090386.1|lncRNA|chr18:37276521:37276572:+	0	+
#Partially deleted in new
chr1	83750197	83750299	ENSG00000233008.5|LINC01725|lncRNA|chr1:83750197:83750299:-	0	-
#Deleted in new
chr18	37528966	37529188	ENSG00000101489.19|CELF4|pc|chr18:37528966:37529188:-	0	-
#Deleted in new
chr1	83831620	83831850	ENSG00000233008.5|LINC01725|lncRNA|chr1:83831620:83831850:-	0	-
#Deleted in new
chr1	83860407	83860546	ENSG00000233008.5|LINC01725|lncRNA|chr1:83860407:83860546:-	0	-
#Deleted in new
chr1	83860818	83860943	ENSG00000233008.5|LINC01725|lncRNA|chr1:83860818:83860943:-	0	-
#Deleted in new
chr1	83860818	83860970	ENSG00000233008.5|LINC01725|lncRNA|chr1:83860818:83860970:-	0	-
#Deleted in new
chr1	83860818	83860996	ENSG00000233008.5|LINC01725|lncRNA|chr1:83860818:83860996:-	0	-
#Deleted in new
chr1	83860969	83861023	ENSG00000233008.5|LINC01725|lncRNA|chr1:83860969:83861023:-	0	-
#Deleted in new
chr18	38670877	38671132	ENSG00000268566.5|AC100781.1|lncRNA|chr18:38670877:38671132:-	0	-
#Deleted in new
chr18	38670947	38670994	ENSG00000268566.5|AC100781.1|lncRNA|chr18:38670947:38670994:-	0	-
#Deleted in new
chr18	3891931	3892005	ENSG00000263724.1|DLGAP1-AS3|lncRNA|chr18:3891931:3892005:+	0	+
#Deleted in new
chr18	3896156	3896658	ENSG00000263724.1|DLGAP1-AS3|lncRNA|chr18:3896156:3896658:+	0	+
#Deleted in new
chr18	3896156	3897069	ENSG00000263724.1|DLGAP1-AS3|lncRNA|chr18:3896156:3897069:+	0	+
#Deleted in new
chr18	39214127	39214269	ENSG00000267374.1|AC016205.1|lncRNA|chr18:39214127:39214269:-	0	-
#Deleted in new
chr18	39326893	39327122	ENSG00000283458.1|AC011139.1|lncRNA|chr18:39326893:39327122:+	0	+
#Deleted in new
chr18	39327765	39327951	ENSG00000267374.1|AC016205.1|lncRNA|chr18:39327765:39327951:-	0	-
#Deleted in new
chr18	39327822	39328005	ENSG00000283458.1|AC011139.1|lncRNA|chr18:39327822:39328005:+	0	+
#Deleted in new
chr18	39327822	39328008	ENSG00000283458.1|AC011139.1|lncRNA|chr18:39327822:39328008:+	0	+
#Partially deleted in new
chr1	83945999	83946412	ENSG00000137941.16|TTLL7|pc|chr1:83945999:83946412:-	0	-
#Deleted in new
chr18	39535457	39535615	ENSG00000267374.1|AC016205.1|lncRNA|chr18:39535457:39535615:-	0	-
#Deleted in new
chr1	83979117	83981569	ENSG00000233061.1|TTLL7-IT1|lncRNA|chr1:83979117:83981569:-	0	-
#Deleted in new
chr18	39800068	39800318	ENSG00000267374.1|AC016205.1|lncRNA|chr18:39800068:39800318:-	0	-
#Partially deleted in new
chr18	3983107	3984259	ENSG00000170579.16|DLGAP1|pc|chr18:3983107:3984259:-	0	-
#Deleted in new
chr1	83983831	83984300	ENSG00000233061.1|TTLL7-IT1|lncRNA|chr1:83983831:83984300:-	0	-
#Deleted in new
chr18	3986119	3986216	ENSG00000170579.16|DLGAP1|pc|chr18:3986119:3986216:-	0	-
#Deleted in new
chr18	3986416	3986654	ENSG00000170579.16|DLGAP1|pc|chr18:3986416:3986654:-	0	-
#Deleted in new
chr18	39867128	39867374	ENSG00000283503.1|LINC01902|lncRNA|chr18:39867128:39867374:+	0	+
#Deleted in new
chr18	39876303	39876395	ENSG00000267413.1|LINC01901|lncRNA|chr18:39876303:39876395:-	0	-
#Deleted in new
chr18	39876387	39876450	ENSG00000283503.1|LINC01902|lncRNA|chr18:39876387:39876450:+	0	+
#Partially deleted in new
chr18	39882420	39882601	ENSG00000283503.1|LINC01902|lncRNA|chr18:39882420:39882601:+	0	+
#Partially deleted in new
chr18	39886351	39889993	ENSG00000283503.1|LINC01902|lncRNA|chr18:39886351:39889993:+	0	+
#Deleted in new
chr18	39894784	39896298	ENSG00000283503.1|LINC01902|lncRNA|chr18:39894784:39896298:+	0	+
#Partially deleted in new
chr18	39921798	39921829	ENSG00000267413.1|LINC01901|lncRNA|chr18:39921798:39921829:-	0	-
#Deleted in new
chr18	39924653	39924840	ENSG00000267413.1|LINC01901|lncRNA|chr18:39924653:39924840:-	0	-
#Deleted in new
chr18	40070358	40070419	ENSG00000261715.1|LINC01477|lncRNA|chr18:40070358:40070419:+	0	+
#Deleted in new
chr18	40082651	40082772	ENSG00000261715.1|LINC01477|lncRNA|chr18:40082651:40082772:+	0	+
#Deleted in new
chr18	4013618	4013943	ENSG00000263878.1|DLGAP1-AS4|lncRNA|chr18:4013618:4013943:+	0	+
#Deleted in new
chr1	841199	841373	ENSG00000228794.8|LINC01128|lncRNA|chr1:841199:841373:+	0	+
#Deleted in new
chr1	841199	841738	ENSG00000228794.8|LINC01128|lncRNA|chr1:841199:841738:+	0	+
#Deleted in new
chr1	841199	842020	ENSG00000228794.8|LINC01128|lncRNA|chr1:841199:842020:+	0	+
#Deleted in new
chr1	84157334	84157405	ENSG00000142875.19|PRKACB|pc|chr1:84157334:84157405:+	0	+
#Deleted in new
chr18	41631999	41632075	ENSG00000267313.7|KC6|lncRNA|chr18:41631999:41632075:-	0	-
#Deleted in new
chr18	41631999	41632124	ENSG00000267313.7|KC6|lncRNA|chr18:41631999:41632124:-	0	-
#Deleted in new
chr18	41631999	41632128	ENSG00000267313.7|KC6|lncRNA|chr18:41631999:41632128:-	0	-
#Deleted in new
chr18	41631999	41632185	ENSG00000267313.7|KC6|lncRNA|chr18:41631999:41632185:-	0	-
#Deleted in new
chr1	84173328	84173352	ENSG00000142875.19|PRKACB|pc|chr1:84173328:84173352:+	0	+
#Partially deleted in new
chr18	41955417	41955444	ENSG00000078142.12|PIK3C3|pc|chr18:41955417:41955444:+	0	+
#Deleted in new
chr18	41984879	41985107	ENSG00000078142.12|PIK3C3|pc|chr18:41984879:41985107:+	0	+
#Partially deleted in new
chr18	42049530	42051313	ENSG00000078142.12|PIK3C3|pc|chr18:42049530:42051313:+	0	+
#Deleted in new
chr18	42049867	42049975	ENSG00000078142.12|PIK3C3|pc|chr18:42049867:42049975:+	0	+
#Deleted in new
chr18	42052704	42053030	ENSG00000276174.1|AC087683.2|lncRNA|chr18:42052704:42053030:+	0	+
#Deleted in new
chr18	42059794	42059894	ENSG00000078142.12|PIK3C3|pc|chr18:42059794:42059894:+	0	+
#Deleted in new
chr18	42070506	42070518	ENSG00000078142.12|PIK3C3|pc|chr18:42070506:42070518:+	0	+
#Split in new
chr18	42081122	42087830	ENSG00000078142.12|PIK3C3|pc|chr18:42081122:42087830:+	0	+
#Deleted in new
chr18	42186166	42186391	ENSG00000267586.6|LINC00907|lncRNA|chr18:42186166:42186391:+	0	+
#Deleted in new
chr18	42186667	42186762	ENSG00000267586.6|LINC00907|lncRNA|chr18:42186667:42186762:+	0	+
#Deleted in new
chr18	42186669	42186762	ENSG00000267586.6|LINC00907|lncRNA|chr18:42186669:42186762:+	0	+
#Deleted in new
chr18	42186675	42186762	ENSG00000267586.6|LINC00907|lncRNA|chr18:42186675:42186762:+	0	+
#Deleted in new
chr18	42186684	42186762	ENSG00000267586.6|LINC00907|lncRNA|chr18:42186684:42186762:+	0	+
#Deleted in new
chr18	42186688	42186762	ENSG00000267586.6|LINC00907|lncRNA|chr18:42186688:42186762:+	0	+
#Deleted in new
chr18	42186691	42186762	ENSG00000267586.6|LINC00907|lncRNA|chr18:42186691:42186762:+	0	+
#Deleted in new
chr18	42186702	42186762	ENSG00000267586.6|LINC00907|lncRNA|chr18:42186702:42186762:+	0	+
#Deleted in new
chr18	42212363	42212526	ENSG00000267586.6|LINC00907|lncRNA|chr18:42212363:42212526:+	0	+
#Deleted in new
chr18	42289503	42289594	ENSG00000267586.6|LINC00907|lncRNA|chr18:42289503:42289594:+	0	+
#Deleted in new
chr18	42337157	42337296	ENSG00000267586.6|LINC00907|lncRNA|chr18:42337157:42337296:+	0	+
#Deleted in new
chr18	42453931	42454098	ENSG00000267586.6|LINC00907|lncRNA|chr18:42453931:42454098:+	0	+
#Deleted in new
chr18	42454906	42454989	ENSG00000267586.6|LINC00907|lncRNA|chr18:42454906:42454989:+	0	+
#Deleted in new
chr18	42461834	42462185	ENSG00000267586.6|LINC00907|lncRNA|chr18:42461834:42462185:+	0	+
#Deleted in new
chr18	42516118	42516169	ENSG00000267586.6|LINC00907|lncRNA|chr18:42516118:42516169:+	0	+
#Partially deleted in new
chr18	42516118	42518953	ENSG00000267586.6|LINC00907|lncRNA|chr18:42516118:42518953:+	0	+
#Deleted in new
chr18	42678847	42678967	ENSG00000267586.6|LINC00907|lncRNA|chr18:42678847:42678967:+	0	+
#Deleted in new
chr18	42691051	42691422	ENSG00000267586.6|LINC00907|lncRNA|chr18:42691051:42691422:+	0	+
#Partially deleted in new
chr18	4280729	4280766	ENSG00000261520.5|DLGAP1-AS5|lncRNA|chr18:4280729:4280766:+	0	+
#Partially deleted in new
chr18	4293159	4295405	ENSG00000261520.5|DLGAP1-AS5|lncRNA|chr18:4293159:4295405:+	0	+
#Deleted in new
chr1	8434632	8434838	ENSG00000232912.5|AL096855.1|lncRNA|chr1:8434632:8434838:+	0	+
#Deleted in new
chr18	43499172	43499836	ENSG00000278933.1|AC022743.1|lncRNA|chr18:43499172:43499836:+	0	+
#Deleted in new
chr18	44325151	44325428	ENSG00000267337.1|LINC01478|lncRNA|chr18:44325151:44325428:-	0	-
#Deleted in new
chr18	44326246	44326482	ENSG00000267337.1|LINC01478|lncRNA|chr18:44326246:44326482:-	0	-
#Deleted in new
chr18	44326445	44326482	ENSG00000267337.1|LINC01478|lncRNA|chr18:44326445:44326482:-	0	-
#Deleted in new
chr18	44373284	44373483	ENSG00000267337.1|LINC01478|lncRNA|chr18:44373284:44373483:-	0	-
#Deleted in new
chr18	44518224	44518363	ENSG00000267337.1|LINC01478|lncRNA|chr18:44518224:44518363:-	0	-
#Deleted in new
chr18	44518224	44518368	ENSG00000267337.1|LINC01478|lncRNA|chr18:44518224:44518368:-	0	-
#Deleted in new
chr18	44531455	44531655	ENSG00000267337.1|LINC01478|lncRNA|chr18:44531455:44531655:-	0	-
#Deleted in new
chr18	44531455	44531697	ENSG00000267337.1|LINC01478|lncRNA|chr18:44531455:44531697:-	0	-
#Partially deleted in new
chr1	84482914	84483330	ENSG00000117133.10|RPF1|pc|chr1:84482914:84483330:+	0	+
#Deleted in new
chr1	84506435	84506565	ENSG00000174021.10|GNG5|pc|chr1:84506435:84506565:-	0	-
#Deleted in new
chr1	84506655	84507001	ENSG00000122432.17|SPATA1|pc|chr1:84506655:84507001:+	0	+
#Deleted in new
chr1	84506876	84507320	ENSG00000122432.17|SPATA1|pc|chr1:84506876:84507320:+	0	+
#Deleted in new
chr18	45179885	45179978	ENSG00000267101.5|AC090376.1|lncRNA|chr18:45179885:45179978:-	0	-
#Deleted in new
chr18	45181000	45181114	ENSG00000267101.5|AC090376.1|lncRNA|chr18:45181000:45181114:-	0	-
#Deleted in new
chr18	45181150	45181347	ENSG00000267101.5|AC090376.1|lncRNA|chr18:45181150:45181347:-	0	-
#Deleted in new
chr1	84527569	84527653	ENSG00000122432.17|SPATA1|pc|chr1:84527569:84527653:+	0	+
#Deleted in new
chr18	45438173	45438345	ENSG00000267097.1|SLC14A2-AS1|lncRNA|chr18:45438173:45438345:-	0	-
#Deleted in new
chr18	45438185	45438345	ENSG00000267097.1|SLC14A2-AS1|lncRNA|chr18:45438185:45438345:-	0	-
#Deleted in new
chr18	45485144	45485316	ENSG00000266988.5|AC021517.1|lncRNA|chr18:45485144:45485316:+	0	+
#Deleted in new
chr18	45492061	45492129	ENSG00000266988.5|AC021517.1|lncRNA|chr18:45492061:45492129:+	0	+
#Deleted in new
chr18	45493052	45493269	ENSG00000266988.5|AC021517.1|lncRNA|chr18:45493052:45493269:+	0	+
#Deleted in new
chr18	45515442	45515601	ENSG00000267354.1|AC091151.1|lncRNA|chr18:45515442:45515601:+	0	+
#Partially deleted in new
chr18	45527856	45528306	ENSG00000266988.5|AC021517.1|lncRNA|chr18:45527856:45528306:+	0	+
#Deleted in new
chr18	45614800	45615582	ENSG00000132874.14|SLC14A2|pc|chr18:45614800:45615582:+	0	+
#Deleted in new
chr18	45615480	45615546	ENSG00000132874.14|SLC14A2|pc|chr18:45615480:45615546:+	0	+
#Deleted in new
chr18	45646152	45647937	ENSG00000266968.2|AC023421.1|lncRNA|chr18:45646152:45647937:+	0	+
#Deleted in new
chr18	45692394	45692440	ENSG00000267193.5|AC023421.2|lncRNA|chr18:45692394:45692440:-	0	-
#Deleted in new
chr18	45737465	45737594	ENSG00000267193.5|AC023421.2|lncRNA|chr18:45737465:45737594:-	0	-
#Partially deleted in new
chr18	45741096	45741127	ENSG00000267193.5|AC023421.2|lncRNA|chr18:45741096:45741127:-	0	-
#Deleted in new
chr18	45907163	45907289	ENSG00000152223.12|EPG5|pc|chr18:45907163:45907289:-	0	-
#Partially deleted in new
chr18	46040159	46040287	ENSG00000152229.18|PSTPIP2|pc|chr18:46040159:46040287:-	0	-
#Partially deleted in new
chr18	46080247	46084363	ENSG00000152234.15|ATP5A1|pc|chr18:46080247:46084363:-	0	-
#Deleted in new
chr18	46093179	46093362	ENSG00000152234.15|ATP5A1|pc|chr18:46093179:46093362:-	0	-
#Deleted in new
chr18	46093179	46093365	ENSG00000152234.15|ATP5A1|pc|chr18:46093179:46093365:-	0	-
#Partially deleted in new
chr18	46106704	46106833	ENSG00000152240.12|HAUS1|pc|chr18:46106704:46106833:+	0	+
#Deleted in new
chr18	46109646	46109784	ENSG00000152240.12|HAUS1|pc|chr18:46109646:46109784:+	0	+
#Deleted in new
chr18	46115067	46115228	ENSG00000152240.12|HAUS1|pc|chr18:46115067:46115228:+	0	+
#Partially deleted in new
chr18	46125743	46125975	ENSG00000152240.12|HAUS1|pc|chr18:46125743:46125975:+	0	+
#Deleted in new
chr18	46126655	46126767	ENSG00000152240.12|HAUS1|pc|chr18:46126655:46126767:+	0	+
#Partially deleted in new
chr18	46128074	46128330	ENSG00000152240.12|HAUS1|pc|chr18:46128074:46128330:+	0	+
#Partially deleted in new
chr18	46128074	46128332	ENSG00000152240.12|HAUS1|pc|chr18:46128074:46128332:+	0	+
#Partially deleted in new
chr18	46128074	46128333	ENSG00000152240.12|HAUS1|pc|chr18:46128074:46128333:+	0	+
#Partially deleted in new
chr18	46228755	46228896	ENSG00000152242.10|C18orf25|pc|chr18:46228755:46228896:+	0	+
#Deleted in new
chr1	84628229	84630887	ENSG00000180869.4|LINC01555|lncRNA|chr1:84628229:84630887:-	0	-
#Deleted in new
chr1	84631609	84631746	ENSG00000180869.4|LINC01555|lncRNA|chr1:84631609:84631746:-	0	-
#Deleted in new
chr18	46326808	46326947	ENSG00000141622.13|RNF165|pc|chr18:46326808:46326947:+	0	+
#Deleted in new
chr1	84634931	84635020	ENSG00000180869.4|LINC01555|lncRNA|chr1:84634931:84635020:-	0	-
#Deleted in new
chr18	46533705	46533759	ENSG00000167210.16|LOXHD1|pc|chr18:46533705:46533759:-	0	-
#Deleted in new
chr18	46556689	46556769	ENSG00000167210.16|LOXHD1|pc|chr18:46556689:46556769:-	0	-
#Deleted in new
chr18	46557901	46558055	ENSG00000167210.16|LOXHD1|pc|chr18:46557901:46558055:-	0	-
#Deleted in new
chr18	46730205	46730361	ENSG00000101638.13|ST8SIA5|pc|chr18:46730205:46730361:-	0	-
#Deleted in new
chr18	46731680	46731763	ENSG00000101638.13|ST8SIA5|pc|chr18:46731680:46731763:-	0	-
#Deleted in new
chr18	46731680	46731843	ENSG00000101638.13|ST8SIA5|pc|chr18:46731680:46731843:-	0	-
#Deleted in new
chr18	46758994	46759142	ENSG00000101638.13|ST8SIA5|pc|chr18:46758994:46759142:-	0	-
#Deleted in new
chr18	46758994	46759257	ENSG00000101638.13|ST8SIA5|pc|chr18:46758994:46759257:-	0	-
#Deleted in new
chr18	46759810	46760344	ENSG00000270112.3|AC090241.2|lncRNA|chr18:46759810:46760344:+	0	+
#Deleted in new
chr18	46786698	46789297	ENSG00000274776.1|AC090241.3|lncRNA|chr18:46786698:46789297:-	0	-
#Deleted in new
chr1	84680337	84680387	ENSG00000117155.16|SSX2IP|pc|chr1:84680337:84680387:-	0	-
#Deleted in new
chr18	46893430	46893531	ENSG00000078043.15|PIAS2|pc|chr18:46893430:46893531:-	0	-
#Deleted in new
chr18	46903526	46903633	ENSG00000078043.15|PIAS2|pc|chr18:46903526:46903633:-	0	-
#Deleted in new
chr18	46903526	46903635	ENSG00000078043.15|PIAS2|pc|chr18:46903526:46903635:-	0	-
#Deleted in new
chr18	46904101	46904206	ENSG00000078043.15|PIAS2|pc|chr18:46904101:46904206:-	0	-
#Deleted in new
chr18	46905759	46906315	ENSG00000078043.15|PIAS2|pc|chr18:46905759:46906315:-	0	-
#Deleted in new
chr18	46906226	46906230	ENSG00000078043.15|PIAS2|pc|chr18:46906226:46906230:-	0	-
#Deleted in new
chr18	46906226	46906315	ENSG00000078043.15|PIAS2|pc|chr18:46906226:46906315:-	0	-
#Deleted in new
chr18	46907497	46907559	ENSG00000078043.15|PIAS2|pc|chr18:46907497:46907559:-	0	-
#Deleted in new
chr18	46907657	46907999	ENSG00000078043.15|PIAS2|pc|chr18:46907657:46907999:-	0	-
#Deleted in new
chr18	46920058	46920143	ENSG00000078043.15|PIAS2|pc|chr18:46920058:46920143:-	0	-
#Deleted in new
chr18	46920058	46920148	ENSG00000078043.15|PIAS2|pc|chr18:46920058:46920148:-	0	-
#Deleted in new
chr18	46920058	46920160	ENSG00000078043.15|PIAS2|pc|chr18:46920058:46920160:-	0	-
#Duplicated in new
chr18	47032571	47035621	ENSG00000206181.5|ELOA2|pc|chr18:47032571:47035621:-	0	-
#Deleted in new
chr18	47098172	47098482	ENSG00000167216.16|KATNAL2|pc|chr18:47098172:47098482:+	0	+
#Deleted in new
chr18	47149048	47149108	ENSG00000167220.11|HDHD2|pc|chr18:47149048:47149108:-	0	-
#Deleted in new
chr18	47150061	47150195	ENSG00000167220.11|HDHD2|pc|chr18:47150061:47150195:-	0	-
#Deleted in new
chr18	47150061	47150201	ENSG00000167220.11|HDHD2|pc|chr18:47150061:47150201:-	0	-
#Deleted in new
chr18	47150377	47150459	ENSG00000167220.11|HDHD2|pc|chr18:47150377:47150459:-	0	-
#Deleted in new
chr18	47150377	47150476	ENSG00000167220.11|HDHD2|pc|chr18:47150377:47150476:-	0	-
#Deleted in new
chr18	47150377	47150479	ENSG00000167220.11|HDHD2|pc|chr18:47150377:47150479:-	0	-
#Deleted in new
chr18	47150377	47150493	ENSG00000167220.11|HDHD2|pc|chr18:47150377:47150493:-	0	-
#Deleted in new
chr18	47150377	47150498	ENSG00000167220.11|HDHD2|pc|chr18:47150377:47150498:-	0	-
#Deleted in new
chr18	47150377	47150500	ENSG00000167220.11|HDHD2|pc|chr18:47150377:47150500:-	0	-
#Deleted in new
chr18	47150377	47150520	ENSG00000167220.11|HDHD2|pc|chr18:47150377:47150520:-	0	-
#Deleted in new
chr18	47285724	47285761	ENSG00000267761.3|MIR4527HG|lncRNA|chr18:47285724:47285761:+	0	+
#Deleted in new
chr18	47285724	47285797	ENSG00000267761.3|MIR4527HG|lncRNA|chr18:47285724:47285797:+	0	+
#Deleted in new
chr18	47501171	47501239	ENSG00000261307.1|AC102797.1|lncRNA|chr18:47501171:47501239:+	0	+
#Deleted in new
chr1	847653	847806	ENSG00000228794.8|LINC01128|lncRNA|chr1:847653:847806:+	0	+
#Deleted in new
chr18	4775053	4775123	ENSG00000266268.5|AP005203.1|lncRNA|chr18:4775053:4775123:-	0	-
#Deleted in new
chr18	47878294	47878493	ENSG00000269365.2|AC120349.1|lncRNA|chr18:47878294:47878493:+	0	+
#Deleted in new
chr18	47882361	47882444	ENSG00000269365.2|AC120349.1|lncRNA|chr18:47882361:47882444:+	0	+
#Deleted in new
chr18	47920071	47920169	ENSG00000175387.15|SMAD2|pc|chr18:47920071:47920169:-	0	-
#Partially deleted in new
chr18	47923565	47923642	ENSG00000175387.15|SMAD2|pc|chr18:47923565:47923642:-	0	-
#Deleted in new
chr18	48076935	48077003	ENSG00000184828.9|ZBTB7C|pc|chr18:48076935:48077003:-	0	-
#Deleted in new
chr18	48087669	48087798	ENSG00000184828.9|ZBTB7C|pc|chr18:48087669:48087798:-	0	-
#Partially deleted in new
chr18	48185323	48185455	ENSG00000184828.9|ZBTB7C|pc|chr18:48185323:48185455:-	0	-
#Deleted in new
chr18	48203414	48203601	ENSG00000184828.9|ZBTB7C|pc|chr18:48203414:48203601:-	0	-
#Deleted in new
chr18	48252160	48252298	ENSG00000184828.9|ZBTB7C|pc|chr18:48252160:48252298:-	0	-
#Deleted in new
chr18	48252300	48252837	ENSG00000280197.1|C18orf12|lncRNA|chr18:48252300:48252837:+	0	+
#Deleted in new
chr18	48350544	48350588	ENSG00000184828.9|ZBTB7C|pc|chr18:48350544:48350588:-	0	-
#Deleted in new
chr18	48375537	48375564	ENSG00000184828.9|ZBTB7C|pc|chr18:48375537:48375564:-	0	-
#Deleted in new
chr18	48375537	48375586	ENSG00000184828.9|ZBTB7C|pc|chr18:48375537:48375586:-	0	-
#Deleted in new
chr18	48375537	48375608	ENSG00000184828.9|ZBTB7C|pc|chr18:48375537:48375608:-	0	-
#Partially deleted in new
chr18	48375537	48375625	ENSG00000184828.9|ZBTB7C|pc|chr18:48375537:48375625:-	0	-
#Partially deleted in new
chr18	48564794	48568342	ENSG00000278983.1|AC048380.2|lncRNA|chr18:48564794:48568342:+	0	+
#Deleted in new
chr18	48625188	48625236	ENSG00000134030.13|CTIF|pc|chr18:48625188:48625236:+	0	+
#Deleted in new
chr18	48661839	48662635	ENSG00000279629.1|AC048380.3|lncRNA|chr18:48661839:48662635:-	0	-
#Deleted in new
chr18	48755692	48756318	ENSG00000279250.1|AC022919.1|lncRNA|chr18:48755692:48756318:+	0	+
#Deleted in new
chr18	48963819	48963941	ENSG00000266905.1|AC114684.1|lncRNA|chr18:48963819:48963941:-	0	-
#Deleted in new
chr18	49013105	49013819	ENSG00000280335.1|AC016866.3|lncRNA|chr18:49013105:49013819:+	0	+
#Deleted in new
chr18	49023702	49023739	ENSG00000264269.1|AC016866.1|lncRNA|chr18:49023702:49023739:+	0	+
#Deleted in new
chr18	49024221	49024309	ENSG00000264269.1|AC016866.1|lncRNA|chr18:49024221:49024309:+	0	+
#Deleted in new
chr18	49026036	49026153	ENSG00000264269.1|AC016866.1|lncRNA|chr18:49026036:49026153:+	0	+
#Deleted in new
chr18	49039999	49040069	ENSG00000264269.1|AC016866.1|lncRNA|chr18:49039999:49040069:+	0	+
#Deleted in new
chr18	49093216	49093311	ENSG00000141627.13|DYM|pc|chr18:49093216:49093311:-	0	-
#Deleted in new
chr18	49205911	49205966	ENSG00000266696.1|AC044840.1|lncRNA|chr18:49205911:49205966:+	0	+
#Partially deleted in new
chr18	49329572	49329707	ENSG00000141627.13|DYM|pc|chr18:49329572:49329707:-	0	-
#Deleted in new
chr18	49368601	49368697	ENSG00000141627.13|DYM|pc|chr18:49368601:49368697:-	0	-
#Deleted in new
chr18	49368601	49368707	ENSG00000141627.13|DYM|pc|chr18:49368601:49368707:-	0	-
#Deleted in new
chr18	49368617	49368713	ENSG00000141627.13|DYM|pc|chr18:49368617:49368713:-	0	-
#Deleted in new
chr18	49368671	49368706	ENSG00000141627.13|DYM|pc|chr18:49368671:49368706:-	0	-
#Deleted in new
chr18	49375647	49375724	ENSG00000141627.13|DYM|pc|chr18:49375647:49375724:-	0	-
#Deleted in new
chr18	49390719	49390812	ENSG00000141627.13|DYM|pc|chr18:49390719:49390812:-	0	-
#Deleted in new
chr18	49393644	49393742	ENSG00000141627.13|DYM|pc|chr18:49393644:49393742:-	0	-
#Deleted in new
chr18	49412966	49413132	ENSG00000141627.13|DYM|pc|chr18:49412966:49413132:-	0	-
#Deleted in new
chr18	49417934	49418057	ENSG00000141627.13|DYM|pc|chr18:49417934:49418057:-	0	-
#Deleted in new
chr18	49417938	49418053	ENSG00000141627.13|DYM|pc|chr18:49417938:49418053:-	0	-
#Deleted in new
chr18	49431743	49431927	ENSG00000263895.1|AC100778.1|lncRNA|chr18:49431743:49431927:-	0	-
#Deleted in new
chr18	49447272	49447420	ENSG00000263895.1|AC100778.1|lncRNA|chr18:49447272:49447420:-	0	-
#Deleted in new
chr18	49461175	49461347	ENSG00000141627.13|DYM|pc|chr18:49461175:49461347:-	0	-
#Deleted in new
chr18	4946881	4947138	ENSG00000266268.5|AP005203.1|lncRNA|chr18:4946881:4947138:-	0	-
#Partially deleted in new
chr18	49477249	49482410	ENSG00000177576.11|C18orf32|pc|chr18:49477249:49482410:-	0	-
#Deleted in new
chr1	849483	849592	ENSG00000228794.8|LINC01128|lncRNA|chr1:849483:849592:+	0	+
#Deleted in new
chr1	849483	849602	ENSG00000228794.8|LINC01128|lncRNA|chr1:849483:849602:+	0	+
#Deleted in new
chr18	49484535	49484822	ENSG00000263916.1|AC100778.2|lncRNA|chr18:49484535:49484822:-	0	-
#Deleted in new
chr18	49485953	49486149	ENSG00000263916.1|AC100778.2|lncRNA|chr18:49485953:49486149:-	0	-
#Partially deleted in new
chr18	49487338	49487817	ENSG00000265496.5|AC100778.4|lncRNA|chr18:49487338:49487817:+	0	+
#Partially deleted in new
chr18	49491735	49491833	ENSG00000265681.7|RPL17|pc|chr18:49491735:49491833:-	0	-
#Partially deleted in new
chr18	49491745	49491833	ENSG00000265681.7|RPL17|pc|chr18:49491745:49491833:-	0	-
#Deleted in new
chr18	49499389	49499424	ENSG00000264464.1|AC091170.1|lncRNA|chr18:49499389:49499424:+	0	+
#Deleted in new
chr1	84971935	84972034	ENSG00000153898.12|MCOLN2|pc|chr1:84971935:84972034:-	0	-
#Deleted in new
chr18	49739822	49740124	ENSG00000267674.1|AC090227.2|lncRNA|chr18:49739822:49740124:-	0	-
#Deleted in new
chr18	49742025	49742063	ENSG00000267674.1|AC090227.2|lncRNA|chr18:49742025:49742063:-	0	-
#Partially deleted in new
chr18	49782166	49783931	ENSG00000167315.17|ACAA2|pc|chr18:49782166:49783931:-	0	-
#Deleted in new
chr18	49811395	49811531	ENSG00000167315.17|ACAA2|pc|chr18:49811395:49811531:-	0	-
#Deleted in new
chr18	49814	49866	ENSG00000282965.1|AP001005.4|lncRNA|chr18:49814:49866:-	0	-
#Deleted in new
chr18	49899	50225	ENSG00000282965.1|AP001005.4|lncRNA|chr18:49899:50225:-	0	-
#Deleted in new
chr18	49970841	49970957	ENSG00000267196.1|AC091044.1|lncRNA|chr18:49970841:49970957:-	0	-
#Partially deleted in new
chr1	84999146	84999338	ENSG00000162643.12|WDR63|pc|chr1:84999146:84999338:+	0	+
#Deleted in new
chr18	5003974	5004003	ENSG00000266268.5|AP005203.1|lncRNA|chr18:5003974:5004003:-	0	-
#Deleted in new
chr18	5004396	5004524	ENSG00000266268.5|AP005203.1|lncRNA|chr18:5004396:5004524:-	0	-
#Deleted in new
chr18	5004396	5004537	ENSG00000266268.5|AP005203.1|lncRNA|chr18:5004396:5004537:-	0	-
#Deleted in new
chr1	850177	850351	ENSG00000228794.8|LINC01128|lncRNA|chr1:850177:850351:+	0	+
#Deleted in new
chr1	850180	850351	ENSG00000228794.8|LINC01128|lncRNA|chr1:850180:850351:+	0	+
#Deleted in new
chr18	50256035	50256461	ENSG00000277310.1|AC090246.1|lncRNA|chr18:50256035:50256461:-	0	-
#Deleted in new
chr18	50302189	50302232	ENSG00000267695.1|AC105227.1|lncRNA|chr18:50302189:50302232:+	0	+
#Deleted in new
chr18	50313200	50313595	ENSG00000267695.1|AC105227.1|lncRNA|chr18:50313200:50313595:+	0	+
#Deleted in new
chr1	85036709	85036868	ENSG00000055732.12|MCOLN3|pc|chr1:85036709:85036868:-	0	-
#Deleted in new
chr18	50374994	50375194	ENSG00000154839.9|SKA1|pc|chr18:50374994:50375194:+	0	+
#Deleted in new
chr18	50375039	50375239	ENSG00000154839.9|SKA1|pc|chr18:50375039:50375239:+	0	+
#Deleted in new
chr18	50375042	50375194	ENSG00000154839.9|SKA1|pc|chr18:50375042:50375194:+	0	+
#Deleted in new
chr18	50375045	50375194	ENSG00000154839.9|SKA1|pc|chr18:50375045:50375194:+	0	+
#Deleted in new
chr18	50375060	50375239	ENSG00000154839.9|SKA1|pc|chr18:50375060:50375239:+	0	+
#Deleted in new
chr18	50420	50549	ENSG00000282965.1|AP001005.4|lncRNA|chr18:50420:50549:-	0	-
#Deleted in new
chr1	85047309	85047609	ENSG00000055732.12|MCOLN3|pc|chr1:85047309:85047609:-	0	-
#Deleted in new
chr1	85047574	85047609	ENSG00000055732.12|MCOLN3|pc|chr1:85047574:85047609:-	0	-
#Duplicated in new
chr18	50669200	50669842	ENSG00000141639.11|MAPK4|pc|chr18:50669200:50669842:+	0	+
#Deleted in new
chr18	5081181	5081240	ENSG00000265514.1|LINC01892|lncRNA|chr18:5081181:5081240:+	0	+
#Deleted in new
chr18	5084991	5085228	ENSG00000265514.1|LINC01892|lncRNA|chr18:5084991:5085228:+	0	+
#Deleted in new
chr18	5084996	5085477	ENSG00000265514.1|LINC01892|lncRNA|chr18:5084996:5085477:+	0	+
#Deleted in new
chr18	50942699	50942736	ENSG00000082212.12|ME2|pc|chr18:50942699:50942736:+	0	+
#Deleted in new
chr18	50945137	50945260	ENSG00000082212.12|ME2|pc|chr18:50945137:50945260:+	0	+
#Deleted in new
chr18	51028393	51028665	ENSG00000141646.13|SMAD4|pc|chr18:51028393:51028665:+	0	+
#Partially deleted in new
chr18	51030596	51030623	ENSG00000141646.13|SMAD4|pc|chr18:51030596:51030623:+	0	+
#Deleted in new
chr18	51044958	51045051	ENSG00000141646.13|SMAD4|pc|chr18:51044958:51045051:+	0	+
#Deleted in new
chr1	851347	852110	ENSG00000228794.8|LINC01128|lncRNA|chr1:851347:852110:+	0	+
#Deleted in new
chr18	51372737	51372804	ENSG00000227115.7|LINC01630|lncRNA|chr18:51372737:51372804:+	0	+
#Deleted in new
chr18	51387171	51387301	ENSG00000227115.7|LINC01630|lncRNA|chr18:51387171:51387301:+	0	+
#Partially deleted in new
chr18	51515653	51516167	ENSG00000227115.7|LINC01630|lncRNA|chr18:51515653:51516167:+	0	+
#Partially deleted in new
chr18	51532111	51532277	ENSG00000227115.7|LINC01630|lncRNA|chr18:51532111:51532277:+	0	+
#Partially deleted in new
chr18	51560592	51560629	ENSG00000227115.7|LINC01630|lncRNA|chr18:51560592:51560629:+	0	+
#Partially deleted in new
chr18	51560592	51560886	ENSG00000227115.7|LINC01630|lncRNA|chr18:51560592:51560886:+	0	+
#Deleted in new
chr18	51560820	51560886	ENSG00000227115.7|LINC01630|lncRNA|chr18:51560820:51560886:+	0	+
#Deleted in new
chr18	51582321	51582438	ENSG00000227115.7|LINC01630|lncRNA|chr18:51582321:51582438:+	0	+
#Deleted in new
chr18	51633448	51633546	ENSG00000227115.7|LINC01630|lncRNA|chr18:51633448:51633546:+	0	+
#Deleted in new
chr18	51634879	51636073	ENSG00000227115.7|LINC01630|lncRNA|chr18:51634879:51636073:+	0	+
#Duplicated in new
chr18	5163680	5163797	ENSG00000266153.1|AP005380.1|lncRNA|chr18:5163680:5163797:+	0	+
#Deleted in new
chr1	851926	851987	ENSG00000228794.8|LINC01128|lncRNA|chr1:851926:851987:+	0	+
#Deleted in new
chr1	851926	851998	ENSG00000228794.8|LINC01128|lncRNA|chr1:851926:851998:+	0	+
#Deleted in new
chr1	851926	852014	ENSG00000228794.8|LINC01128|lncRNA|chr1:851926:852014:+	0	+
#Deleted in new
chr1	851926	852090	ENSG00000228794.8|LINC01128|lncRNA|chr1:851926:852090:+	0	+
#Deleted in new
chr1	851926	852110	ENSG00000228794.8|LINC01128|lncRNA|chr1:851926:852110:+	0	+
#Deleted in new
chr1	851926	852225	ENSG00000228794.8|LINC01128|lncRNA|chr1:851926:852225:+	0	+
#Deleted in new
chr1	851926	852515	ENSG00000228794.8|LINC01128|lncRNA|chr1:851926:852515:+	0	+
#Deleted in new
chr1	8519709	8519792	ENSG00000142599.17|RERE|pc|chr1:8519709:8519792:-	0	-
#Deleted in new
chr18	5235838	5235900	ENSG00000265091.5|AP001496.2|lncRNA|chr18:5235838:5235900:-	0	-
#Partially deleted in new
chr18	5237825	5239859	ENSG00000263753.6|LINC00667|lncRNA|chr18:5237825:5239859:+	0	+
#Deleted in new
chr18	5238549	5239049	ENSG00000263753.6|LINC00667|lncRNA|chr18:5238549:5239049:+	0	+
#Deleted in new
chr18	5241698	5241812	ENSG00000263753.6|LINC00667|lncRNA|chr18:5241698:5241812:+	0	+
#Deleted in new
chr18	5241698	5241889	ENSG00000263753.6|LINC00667|lncRNA|chr18:5241698:5241889:+	0	+
#Deleted in new
chr18	5243593	5243911	ENSG00000263753.6|LINC00667|lncRNA|chr18:5243593:5243911:+	0	+
#Deleted in new
chr18	5243593	5243936	ENSG00000263753.6|LINC00667|lncRNA|chr18:5243593:5243936:+	0	+
#Deleted in new
chr18	5243593	5246508	ENSG00000263753.6|LINC00667|lncRNA|chr18:5243593:5246508:+	0	+
#Deleted in new
chr1	852670	852752	ENSG00000228794.8|LINC01128|lncRNA|chr1:852670:852752:+	0	+
#Deleted in new
chr1	852670	852766	ENSG00000228794.8|LINC01128|lncRNA|chr1:852670:852766:+	0	+
#Deleted in new
chr18	52754079	52754256	ENSG00000187323.11|DCC|pc|chr18:52754079:52754256:+	0	+
#Deleted in new
chr18	52809298	52809422	ENSG00000187323.11|DCC|pc|chr18:52809298:52809422:+	0	+
#Partially deleted in new
chr18	52818089	52818198	ENSG00000187323.11|DCC|pc|chr18:52818089:52818198:+	0	+
#Partially deleted in new
chr18	52934771	52934890	ENSG00000187323.11|DCC|pc|chr18:52934771:52934890:+	0	+
#Partially deleted in new
chr18	52934802	52934890	ENSG00000187323.11|DCC|pc|chr18:52934802:52934890:+	0	+
#Deleted in new
chr18	52940928	52941165	ENSG00000187323.11|DCC|pc|chr18:52940928:52941165:+	0	+
#Deleted in new
chr18	52965030	52965126	ENSG00000187323.11|DCC|pc|chr18:52965030:52965126:+	0	+
#Deleted in new
chr18	5310395	5310452	ENSG00000264254.1|AP001496.1|lncRNA|chr18:5310395:5310452:+	0	+
#Deleted in new
chr1	853390	853522	ENSG00000228794.8|LINC01128|lncRNA|chr1:853390:853522:+	0	+
#Deleted in new
chr1	853390	853626	ENSG00000228794.8|LINC01128|lncRNA|chr1:853390:853626:+	0	+
#Deleted in new
chr1	853390	859446	ENSG00000228794.8|LINC01128|lncRNA|chr1:853390:859446:+	0	+
#Deleted in new
chr18	53577418	53577722	ENSG00000263438.5|LINC01919|lncRNA|chr18:53577418:53577722:+	0	+
#Deleted in new
chr18	53578072	53578121	ENSG00000263438.5|LINC01919|lncRNA|chr18:53578072:53578121:+	0	+
#Partially deleted in new
chr18	53579622	53580011	ENSG00000260433.1|LINC01917|lncRNA|chr18:53579622:53580011:-	0	-
#Deleted in new
chr18	53588547	53588751	ENSG00000263438.5|LINC01919|lncRNA|chr18:53588547:53588751:+	0	+
#Deleted in new
chr18	53594804	53594883	ENSG00000263438.5|LINC01919|lncRNA|chr18:53594804:53594883:+	0	+
#Deleted in new
chr18	53597792	53597851	ENSG00000263438.5|LINC01919|lncRNA|chr18:53597792:53597851:+	0	+
#Deleted in new
chr1	85380373	85380565	ENSG00000223653.5|AL078459.1|lncRNA|chr1:85380373:85380565:+	0	+
#Deleted in new
chr1	85398456	85399963	ENSG00000223653.5|AL078459.1|lncRNA|chr1:85398456:85399963:+	0	+
#Deleted in new
chr18	54272169	54272242	ENSG00000101751.10|POLI|pc|chr18:54272169:54272242:+	0	+
#Deleted in new
chr18	54274896	54275028	ENSG00000101751.10|POLI|pc|chr18:54274896:54275028:+	0	+
#Deleted in new
chr18	5429247	5429385	ENSG00000082397.17|EPB41L3|pc|chr18:5429247:5429385:-	0	-
#Deleted in new
chr18	54320272	54320392	ENSG00000101751.10|POLI|pc|chr18:54320272:54320392:+	0	+
#Deleted in new
chr18	54321065	54321266	ENSG00000101751.10|POLI|pc|chr18:54321065:54321266:+	0	+
#Deleted in new
chr18	54380883	54380928	ENSG00000166845.13|C18orf54|pc|chr18:54380883:54380928:+	0	+
#Deleted in new
chr18	54381675	54381729	ENSG00000166845.13|C18orf54|pc|chr18:54381675:54381729:+	0	+
#Deleted in new
chr18	54385116	54385218	ENSG00000166845.13|C18orf54|pc|chr18:54385116:54385218:+	0	+
#Deleted in new
chr18	54587756	54587866	ENSG00000178690.2|DYNAP|pc|chr18:54587756:54587866:+	0	+
#Deleted in new
chr18	5463626	5463834	ENSG00000265316.1|AP005059.2|lncRNA|chr18:5463626:5463834:+	0	+
#Deleted in new
chr18	5479625	5479746	ENSG00000265316.1|AP005059.2|lncRNA|chr18:5479625:5479746:+	0	+
#Deleted in new
chr18	5480069	5480123	ENSG00000082397.17|EPB41L3|pc|chr18:5480069:5480123:-	0	-
#Deleted in new
chr18	5480895	5480975	ENSG00000265316.1|AP005059.2|lncRNA|chr18:5480895:5480975:+	0	+
#Deleted in new
chr18	54885865	54885892	ENSG00000267112.1|AC098848.1|lncRNA|chr18:54885865:54885892:-	0	-
#Deleted in new
chr18	54897925	54898083	ENSG00000267112.1|AC098848.1|lncRNA|chr18:54897925:54898083:-	0	-
#Deleted in new
chr18	5518524	5518607	ENSG00000082397.17|EPB41L3|pc|chr18:5518524:5518607:-	0	-
#Deleted in new
chr1	85521667	85521810	ENSG00000282057.1|AC092807.3|lncRNA|chr1:85521667:85521810:-	0	-
#Deleted in new
chr18	55284286	55284408	ENSG00000196628.15|TCF4|pc|chr18:55284286:55284408:-	0	-
#Deleted in new
chr18	5528950	5528999	ENSG00000082397.17|EPB41L3|pc|chr18:5528950:5528999:-	0	-
#Deleted in new
chr18	55482149	55482256	ENSG00000196628.15|TCF4|pc|chr18:55482149:55482256:-	0	-
#Deleted in new
chr18	55596105	55596226	ENSG00000196628.15|TCF4|pc|chr18:55596105:55596226:-	0	-
#Partially deleted in new
chr18	55631297	55631362	ENSG00000196628.15|TCF4|pc|chr18:55631297:55631362:-	0	-
#Partially deleted in new
chr18	55631297	55631388	ENSG00000196628.15|TCF4|pc|chr18:55631297:55631388:-	0	-
#Duplicated in new
chr18	55635702	55635892	ENSG00000196628.15|TCF4|pc|chr18:55635702:55635892:-	0	-
#Duplicated in new
chr18	55635702	55635948	ENSG00000196628.15|TCF4|pc|chr18:55635702:55635948:-	0	-
#Duplicated in new
chr18	55635702	55635957	ENSG00000196628.15|TCF4|pc|chr18:55635702:55635957:-	0	-
#Duplicated in new
chr18	55635702	55635972	ENSG00000196628.15|TCF4|pc|chr18:55635702:55635972:-	0	-
#Deleted in new
chr18	55664674	55664787	ENSG00000196628.15|TCF4|pc|chr18:55664674:55664787:-	0	-
#Deleted in new
chr18	5567129	5567394	ENSG00000264000.1|AP005059.1|lncRNA|chr18:5567129:5567394:+	0	+
#Deleted in new
chr18	55721062	55721534	ENSG00000267284.1|AC022031.2|lncRNA|chr18:55721062:55721534:+	0	+
#Deleted in new
chr18	55721317	55721534	ENSG00000267284.1|AC022031.2|lncRNA|chr18:55721317:55721534:+	0	+
#Deleted in new
chr18	55721395	55721534	ENSG00000267284.1|AC022031.2|lncRNA|chr18:55721395:55721534:+	0	+
#Deleted in new
chr18	55759039	55759122	ENSG00000267284.1|AC022031.2|lncRNA|chr18:55759039:55759122:+	0	+
#Deleted in new
chr18	55761302	55761563	ENSG00000267284.1|AC022031.2|lncRNA|chr18:55761302:55761563:+	0	+
#Deleted in new
chr18	55772706	55772771	ENSG00000267284.1|AC022031.2|lncRNA|chr18:55772706:55772771:+	0	+
#Deleted in new
chr18	55788612	55788761	ENSG00000267284.1|AC022031.2|lncRNA|chr18:55788612:55788761:+	0	+
#Deleted in new
chr18	55893037	55893442	ENSG00000267327.1|AC009271.1|lncRNA|chr18:55893037:55893442:+	0	+
#Deleted in new
chr1	85599130	85599231	ENSG00000230285.1|AC092807.1|lncRNA|chr1:85599130:85599231:+	0	+
#Deleted in new
chr18	56027796	56028940	ENSG00000206129.3|AC006305.1|lncRNA|chr18:56027796:56028940:-	0	-
#Deleted in new
chr18	56040331	56040650	ENSG00000206129.3|AC006305.1|lncRNA|chr18:56040331:56040650:-	0	-
#Deleted in new
chr18	56042134	56042344	ENSG00000267057.5|LINC01905|lncRNA|chr18:56042134:56042344:+	0	+
#Deleted in new
chr18	56042252	56042344	ENSG00000267057.5|LINC01905|lncRNA|chr18:56042252:56042344:+	0	+
#Deleted in new
chr18	56055904	56056006	ENSG00000206129.3|AC006305.1|lncRNA|chr18:56055904:56056006:-	0	-
#Deleted in new
chr18	56055904	56056054	ENSG00000206129.3|AC006305.1|lncRNA|chr18:56055904:56056054:-	0	-
#Deleted in new
chr18	56056541	56056659	ENSG00000206129.3|AC006305.1|lncRNA|chr18:56056541:56056659:-	0	-
#Deleted in new
chr18	56060103	56060204	ENSG00000206129.3|AC006305.1|lncRNA|chr18:56060103:56060204:-	0	-
#Deleted in new
chr18	56061108	56061278	ENSG00000267399.1|AC006305.2|lncRNA|chr18:56061108:56061278:-	0	-
#Partially deleted in new
chr18	56087236	56087760	ENSG00000267712.5|LINC01539|lncRNA|chr18:56087236:56087760:-	0	-
#Deleted in new
chr18	56087638	56087760	ENSG00000267712.5|LINC01539|lncRNA|chr18:56087638:56087760:-	0	-
#Deleted in new
chr18	56088409	56088583	ENSG00000267057.5|LINC01905|lncRNA|chr18:56088409:56088583:+	0	+
#Deleted in new
chr18	56088410	56088583	ENSG00000267057.5|LINC01905|lncRNA|chr18:56088410:56088583:+	0	+
#Deleted in new
chr18	56090184	56090303	ENSG00000267712.5|LINC01539|lncRNA|chr18:56090184:56090303:-	0	-
#Deleted in new
chr18	56105105	56105613	ENSG00000267712.5|LINC01539|lncRNA|chr18:56105105:56105613:-	0	-
#Deleted in new
chr18	56105526	56105613	ENSG00000267712.5|LINC01539|lncRNA|chr18:56105526:56105613:-	0	-
#Deleted in new
chr18	56121277	56121446	ENSG00000267712.5|LINC01539|lncRNA|chr18:56121277:56121446:-	0	-
#Deleted in new
chr18	56121622	56121957	ENSG00000267712.5|LINC01539|lncRNA|chr18:56121622:56121957:-	0	-
#Deleted in new
chr18	56122292	56122488	ENSG00000267712.5|LINC01539|lncRNA|chr18:56122292:56122488:-	0	-
#Deleted in new
chr18	56122292	56122529	ENSG00000267712.5|LINC01539|lncRNA|chr18:56122292:56122529:-	0	-
#Partially deleted in new
chr18	5612339	5612428	ENSG00000082397.17|EPB41L3|pc|chr18:5612339:5612428:-	0	-
#Deleted in new
chr18	56129800	56129973	ENSG00000267712.5|LINC01539|lncRNA|chr18:56129800:56129973:-	0	-
#Deleted in new
chr18	56138611	56138715	ENSG00000267732.1|AC006305.3|lncRNA|chr18:56138611:56138715:+	0	+
#Deleted in new
chr18	56142871	56143221	ENSG00000267732.1|AC006305.3|lncRNA|chr18:56142871:56143221:+	0	+
#Partially deleted in new
chr1	85649422	85654098	ENSG00000117174.10|ZNHIT6|pc|chr1:85649422:85654098:-	0	-
#Deleted in new
chr18	56599067	56600365	ENSG00000091164.12|TXNL1|pc|chr18:56599067:56600365:-	0	-
#Deleted in new
chr18	56600102	56600433	ENSG00000091164.12|TXNL1|pc|chr18:56600102:56600433:-	0	-
#Deleted in new
chr18	56638961	56639039	ENSG00000091164.12|TXNL1|pc|chr18:56638961:56639039:-	0	-
#Deleted in new
chr18	56647062	56647535	ENSG00000091164.12|TXNL1|pc|chr18:56647062:56647535:-	0	-
#Deleted in new
chr18	56647448	56647535	ENSG00000091164.12|TXNL1|pc|chr18:56647448:56647535:-	0	-
#Deleted in new
chr18	56651016	56651045	ENSG00000091164.12|TXNL1|pc|chr18:56651016:56651045:-	0	-
#Deleted in new
chr18	56721449	56721669	ENSG00000091157.13|WDR7|pc|chr18:56721449:56721669:+	0	+
#Deleted in new
chr18	56721484	56721583	ENSG00000091157.13|WDR7|pc|chr18:56721484:56721583:+	0	+
#Deleted in new
chr18	56721535	56721707	ENSG00000091157.13|WDR7|pc|chr18:56721535:56721707:+	0	+
#Deleted in new
chr18	57009837	57010314	ENSG00000091157.13|WDR7|pc|chr18:57009837:57010314:+	0	+
#Deleted in new
chr18	57054558	57056250	ENSG00000258609.2|LINC-ROR|lncRNA|chr18:57054558:57056250:-	0	-
#Deleted in new
chr18	57057499	57058000	ENSG00000258609.2|LINC-ROR|lncRNA|chr18:57057499:57058000:-	0	-
#Deleted in new
chr18	57069809	57070003	ENSG00000258609.2|LINC-ROR|lncRNA|chr18:57069809:57070003:-	0	-
#Deleted in new
chr18	57071903	57072119	ENSG00000258609.2|LINC-ROR|lncRNA|chr18:57071903:57072119:-	0	-
#Partially deleted in new
chr18	57136321	57136610	ENSG00000267789.1|AC100775.1|lncRNA|chr18:57136321:57136610:-	0	-
#Deleted in new
chr18	57146875	57146998	ENSG00000267789.1|AC100775.1|lncRNA|chr18:57146875:57146998:-	0	-
#Duplicated in new
chr18	57147061	57150300	ENSG00000228075.4|BOD1L2|pc|chr18:57147061:57150300:+	0	+
#Deleted in new
chr18	57169614	57170030	ENSG00000267726.1|LINC02565|lncRNA|chr18:57169614:57170030:-	0	-
#Deleted in new
chr18	57171132	57171194	ENSG00000267726.1|LINC02565|lncRNA|chr18:57171132:57171194:-	0	-
#Deleted in new
chr18	57567844	57567876	ENSG00000066926.10|FECH|pc|chr18:57567844:57567876:-	0	-
#Deleted in new
chr18	5762297	5762473	ENSG00000261738.6|MIR3976HG|lncRNA|chr18:5762297:5762473:+	0	+
#Deleted in new
chr18	5762441	5762473	ENSG00000261738.6|MIR3976HG|lncRNA|chr18:5762441:5762473:+	0	+
#Deleted in new
chr18	57630301	57630518	ENSG00000267040.6|AC027097.1|lncRNA|chr18:57630301:57630518:+	0	+
#Deleted in new
chr18	57630349	57630518	ENSG00000267040.6|AC027097.1|lncRNA|chr18:57630349:57630518:+	0	+
#Deleted in new
chr18	57639454	57639530	ENSG00000267787.5|AC027097.2|lncRNA|chr18:57639454:57639530:+	0	+
#Deleted in new
chr18	57641558	57642052	ENSG00000267040.6|AC027097.1|lncRNA|chr18:57641558:57642052:+	0	+
#Deleted in new
chr18	57641558	57642052	ENSG00000267787.5|AC027097.2|lncRNA|chr18:57641558:57642052:+	0	+
#Deleted in new
chr18	57641913	57642052	ENSG00000267040.6|AC027097.1|lncRNA|chr18:57641913:57642052:+	0	+
#Deleted in new
chr18	57734025	57734096	ENSG00000267787.5|AC027097.2|lncRNA|chr18:57734025:57734096:+	0	+
#Deleted in new
chr18	57735150	57735592	ENSG00000267787.5|AC027097.2|lncRNA|chr18:57735150:57735592:+	0	+
#Deleted in new
chr18	57735399	57735592	ENSG00000267787.5|AC027097.2|lncRNA|chr18:57735399:57735592:+	0	+
#Deleted in new
chr18	57737035	57737091	ENSG00000267787.5|AC027097.2|lncRNA|chr18:57737035:57737091:+	0	+
#Deleted in new
chr18	57737761	57738044	ENSG00000267787.5|AC027097.2|lncRNA|chr18:57737761:57738044:+	0	+
#Deleted in new
chr18	57740496	57740965	ENSG00000081923.11|ATP8B1|pc|chr18:57740496:57740965:-	0	-
#Deleted in new
chr18	5793586	5793742	ENSG00000261738.6|MIR3976HG|lncRNA|chr18:5793586:5793742:+	0	+
#Deleted in new
chr18	5793586	5793796	ENSG00000261738.6|MIR3976HG|lncRNA|chr18:5793586:5793796:+	0	+
#Deleted in new
chr18	5794793	5795901	ENSG00000261738.6|MIR3976HG|lncRNA|chr18:5794793:5795901:+	0	+
#Deleted in new
chr18	57961230	57961406	ENSG00000267209.5|LINC01897|lncRNA|chr18:57961230:57961406:-	0	-
#Deleted in new
chr18	57961501	57961624	ENSG00000267209.5|LINC01897|lncRNA|chr18:57961501:57961624:-	0	-
#Deleted in new
chr18	57961505	57961624	ENSG00000267209.5|LINC01897|lncRNA|chr18:57961505:57961624:-	0	-
#Deleted in new
chr18	57964398	57964434	ENSG00000267209.5|LINC01897|lncRNA|chr18:57964398:57964434:-	0	-
#Deleted in new
chr18	58189833	58189959	ENSG00000267743.5|AC107896.1|lncRNA|chr18:58189833:58189959:-	0	-
#Deleted in new
chr18	58189896	58189959	ENSG00000267743.5|AC107896.1|lncRNA|chr18:58189896:58189959:-	0	-
#Deleted in new
chr18	58314554	58314589	ENSG00000049759.17|NEDD4L|pc|chr18:58314554:58314589:+	0	+
#Deleted in new
chr18	58359870	58360058	ENSG00000049759.17|NEDD4L|pc|chr18:58359870:58360058:+	0	+
#Partially deleted in new
chr18	58371565	58372666	ENSG00000267504.1|AC090236.2|lncRNA|chr18:58371565:58372666:+	0	+
#Partially deleted in new
chr18	58387710	58389192	ENSG00000049759.17|NEDD4L|pc|chr18:58387710:58389192:+	0	+
#Deleted in new
chr18	58416764	58416921	ENSG00000267675.1|AC105105.3|lncRNA|chr18:58416764:58416921:+	0	+
#Deleted in new
chr18	58417139	58417628	ENSG00000267675.1|AC105105.3|lncRNA|chr18:58417139:58417628:+	0	+
#Deleted in new
chr18	58580707	58580973	ENSG00000198796.6|ALPK2|pc|chr18:58580707:58580973:-	0	-
#Deleted in new
chr18	58659857	58660013	ENSG00000275418.1|AC104971.4|lncRNA|chr18:58659857:58660013:+	0	+
#Deleted in new
chr18	58660431	58660524	ENSG00000275418.1|AC104971.4|lncRNA|chr18:58660431:58660524:+	0	+
#Deleted in new
chr18	58677584	58677614	ENSG00000267476.1|AC104365.1|lncRNA|chr18:58677584:58677614:-	0	-
#Deleted in new
chr18	58697176	58697267	ENSG00000267476.1|AC104365.1|lncRNA|chr18:58697176:58697267:-	0	-
#Partially deleted in new
chr18	58747404	58754477	ENSG00000172175.12|MALT1|pc|chr18:58747404:58754477:+	0	+
#Deleted in new
chr18	58752178	58752400	ENSG00000267705.1|AC104365.3|lncRNA|chr18:58752178:58752400:-	0	-
#Deleted in new
chr18	58752674	58752730	ENSG00000267476.1|AC104365.1|lncRNA|chr18:58752674:58752730:-	0	-
#Deleted in new
chr18	58757472	58757842	ENSG00000267501.1|AC104365.2|lncRNA|chr18:58757472:58757842:-	0	-
#Partially deleted in new
chr18	5876252	5876328	ENSG00000261738.6|MIR3976HG|lncRNA|chr18:5876252:5876328:+	0	+
#Deleted in new
chr18	58831685	58831788	ENSG00000267593.1|LINC01926|lncRNA|chr18:58831685:58831788:+	0	+
#Deleted in new
chr18	58931645	58931755	ENSG00000074657.13|ZNF532|pc|chr18:58931645:58931755:+	0	+
#Deleted in new
chr18	58953183	58953282	ENSG00000074657.13|ZNF532|pc|chr18:58953183:58953282:+	0	+
#Deleted in new
chr18	58954233	58954334	ENSG00000074657.13|ZNF532|pc|chr18:58954233:58954334:+	0	+
#Deleted in new
chr18	58977489	58977668	ENSG00000074657.13|ZNF532|pc|chr18:58977489:58977668:+	0	+
#Partially deleted in new
chr18	58979054	58979491	ENSG00000074657.13|ZNF532|pc|chr18:58979054:58979491:+	0	+
#Deleted in new
chr1	8590784	8590841	ENSG00000142599.17|RERE|pc|chr1:8590784:8590841:-	0	-
#Deleted in new
chr18	59081923	59082116	ENSG00000267215.1|AC040963.1|lncRNA|chr18:59081923:59082116:+	0	+
#Deleted in new
chr18	5908950	5909122	ENSG00000264449.5|AP005433.1|lncRNA|chr18:5908950:5909122:+	0	+
#Deleted in new
chr18	59351411	59351589	ENSG00000074695.5|LMAN1|pc|chr18:59351411:59351589:-	0	-
#Deleted in new
chr18	59459071	59459089	ENSG00000267000.1|AC016229.1|lncRNA|chr18:59459071:59459089:+	0	+
#Deleted in new
chr18	59462430	59462528	ENSG00000267000.1|AC016229.1|lncRNA|chr18:59462430:59462528:+	0	+
#Deleted in new
chr1	85960757	85960880	ENSG00000171502.14|COL24A1|pc|chr1:85960757:85960880:-	0	-
#Deleted in new
chr18	59666075	59666162	ENSG00000183287.13|CCBE1|pc|chr18:59666075:59666162:-	0	-
#Deleted in new
chr18	59688195	59688400	ENSG00000267269.1|AC010776.1|lncRNA|chr18:59688195:59688400:+	0	+
#Deleted in new
chr18	596987	597129	ENSG00000079101.16|CLUL1|pc|chr18:596987:597129:+	0	+
#Deleted in new
chr18	596997	597129	ENSG00000079101.16|CLUL1|pc|chr18:596997:597129:+	0	+
#Deleted in new
chr18	597001	597129	ENSG00000079101.16|CLUL1|pc|chr18:597001:597129:+	0	+
#Deleted in new
chr18	597022	597129	ENSG00000079101.16|CLUL1|pc|chr18:597022:597129:+	0	+
#Deleted in new
chr18	60013235	60014258	ENSG00000267462.1|AC090377.1|lncRNA|chr18:60013235:60014258:+	0	+
#Deleted in new
chr18	60294150	60294311	ENSG00000267401.1|AC090621.1|lncRNA|chr18:60294150:60294311:+	0	+
#Partially deleted in new
chr18	60300952	60301118	ENSG00000267401.1|AC090621.1|lncRNA|chr18:60300952:60301118:+	0	+
#Deleted in new
chr18	6046727	6046754	ENSG00000154655.15|L3MBTL4|pc|chr18:6046727:6046754:-	0	-
#Deleted in new
chr18	60630166	60630213	ENSG00000267098.1|AC113137.1|lncRNA|chr18:60630166:60630213:-	0	-
#Deleted in new
chr18	60650749	60650825	ENSG00000267098.1|AC113137.1|lncRNA|chr18:60650749:60650825:-	0	-
#Deleted in new
chr18	606977	607099	ENSG00000079101.16|CLUL1|pc|chr18:606977:607099:+	0	+
#Deleted in new
chr18	607079	607099	ENSG00000079101.16|CLUL1|pc|chr18:607079:607099:+	0	+
#Deleted in new
chr18	60730885	60730938	ENSG00000267098.1|AC113137.1|lncRNA|chr18:60730885:60730938:-	0	-
#Deleted in new
chr18	60771935	60771982	ENSG00000267098.1|AC113137.1|lncRNA|chr18:60771935:60771982:-	0	-
#Deleted in new
chr18	60804343	60804380	ENSG00000267098.1|AC113137.1|lncRNA|chr18:60804343:60804380:-	0	-
#Deleted in new
chr18	60827741	60827794	ENSG00000267098.1|AC113137.1|lncRNA|chr18:60827741:60827794:-	0	-
#Deleted in new
chr18	60902688	60902726	ENSG00000267098.1|AC113137.1|lncRNA|chr18:60902688:60902726:-	0	-
#Deleted in new
chr18	612764	612911	ENSG00000079101.16|CLUL1|pc|chr18:612764:612911:+	0	+
#Deleted in new
chr18	613158	613281	ENSG00000079101.16|CLUL1|pc|chr18:613158:613281:+	0	+
#Deleted in new
chr18	614507	614797	ENSG00000079101.16|CLUL1|pc|chr18:614507:614797:+	0	+
#Deleted in new
chr18	61573893	61573950	ENSG00000267316.5|AC090409.2|lncRNA|chr18:61573893:61573950:-	0	-
#Deleted in new
chr18	61577027	61577151	ENSG00000267316.5|AC090409.2|lncRNA|chr18:61577027:61577151:-	0	-
#Deleted in new
chr18	61577027	61577211	ENSG00000267316.5|AC090409.2|lncRNA|chr18:61577027:61577211:-	0	-
#Deleted in new
chr18	61585745	61585850	ENSG00000267279.1|AC090409.1|lncRNA|chr18:61585745:61585850:-	0	-
#Partially deleted in new
chr18	61611636	61612154	ENSG00000267175.5|AC105094.2|lncRNA|chr18:61611636:61612154:-	0	-
#Deleted in new
chr18	61628035	61628072	ENSG00000267175.5|AC105094.2|lncRNA|chr18:61628035:61628072:-	0	-
#Partially deleted in new
chr18	61681652	61681801	ENSG00000267038.1|AC105094.1|lncRNA|chr18:61681652:61681801:+	0	+
#Partially deleted in new
chr18	61751066	61751148	ENSG00000260440.2|LINC01544|lncRNA|chr18:61751066:61751148:+	0	+
#Deleted in new
chr18	62017628	62017741	ENSG00000197563.10|PIGN|pc|chr18:62017628:62017741:-	0	-
#Deleted in new
chr18	62051787	62052957	ENSG00000197563.10|PIGN|pc|chr18:62051787:62052957:-	0	-
#Deleted in new
chr18	62052548	62052957	ENSG00000197563.10|PIGN|pc|chr18:62052548:62052957:-	0	-
#Deleted in new
chr18	62056721	62056844	ENSG00000197563.10|PIGN|pc|chr18:62056721:62056844:-	0	-
#Deleted in new
chr18	62058815	62059020	ENSG00000197563.10|PIGN|pc|chr18:62058815:62059020:-	0	-
#Deleted in new
chr18	62059047	62059168	ENSG00000197563.10|PIGN|pc|chr18:62059047:62059168:-	0	-
#Deleted in new
chr18	62069391	62070506	ENSG00000197563.10|PIGN|pc|chr18:62069391:62070506:-	0	-
#Deleted in new
chr18	62070389	62070506	ENSG00000197563.10|PIGN|pc|chr18:62070389:62070506:-	0	-
#Deleted in new
chr18	62072320	62072365	ENSG00000197563.10|PIGN|pc|chr18:62072320:62072365:-	0	-
#Partially deleted in new
chr18	62072369	62072725	ENSG00000197563.10|PIGN|pc|chr18:62072369:62072725:-	0	-
#Partially deleted in new
chr18	62074778	62075181	ENSG00000197563.10|PIGN|pc|chr18:62074778:62075181:-	0	-
#Partially deleted in new
chr18	62074778	62075900	ENSG00000197563.10|PIGN|pc|chr18:62074778:62075900:-	0	-
#Partially deleted in new
chr18	62074778	62076027	ENSG00000197563.10|PIGN|pc|chr18:62074778:62076027:-	0	-
#Deleted in new
chr18	62107467	62107586	ENSG00000197563.10|PIGN|pc|chr18:62107467:62107586:-	0	-
#Deleted in new
chr18	62118546	62118657	ENSG00000197563.10|PIGN|pc|chr18:62118546:62118657:-	0	-
#Partially deleted in new
chr18	62135652	62137112	ENSG00000197563.10|PIGN|pc|chr18:62135652:62137112:-	0	-
#Partially deleted in new
chr18	62135740	62138298	ENSG00000197563.10|PIGN|pc|chr18:62135740:62138298:-	0	-
#Deleted in new
chr18	62163530	62163656	ENSG00000197563.10|PIGN|pc|chr18:62163530:62163656:-	0	-
#Deleted in new
chr18	62174326	62174430	ENSG00000197563.10|PIGN|pc|chr18:62174326:62174430:-	0	-
#Deleted in new
chr18	62186249	62186313	ENSG00000197563.10|PIGN|pc|chr18:62186249:62186313:-	0	-
#Deleted in new
chr18	62269410	62269512	ENSG00000134444.13|KIAA1468|pc|chr18:62269410:62269512:+	0	+
#Partially deleted in new
chr18	62285448	62285973	ENSG00000134444.13|KIAA1468|pc|chr18:62285448:62285973:+	0	+
#Deleted in new
chr18	62300035	62300607	ENSG00000267560.1|AC027514.2|lncRNA|chr18:62300035:62300607:-	0	-
#Deleted in new
chr18	62300933	62300998	ENSG00000267560.1|AC027514.2|lncRNA|chr18:62300933:62300998:-	0	-
#Deleted in new
chr18	62372893	62372963	ENSG00000267341.1|AC100843.2|lncRNA|chr18:62372893:62372963:-	0	-
#Deleted in new
chr18	62373945	62374147	ENSG00000267341.1|AC100843.2|lncRNA|chr18:62373945:62374147:-	0	-
#Deleted in new
chr18	62378078	62378130	ENSG00000267341.1|AC100843.2|lncRNA|chr18:62378078:62378130:-	0	-
#Deleted in new
chr18	624864	624907	ENSG00000079101.16|CLUL1|pc|chr18:624864:624907:+	0	+
#Deleted in new
chr18	624864	625032	ENSG00000079101.16|CLUL1|pc|chr18:624864:625032:+	0	+
#Deleted in new
chr18	624955	625032	ENSG00000079101.16|CLUL1|pc|chr18:624955:625032:+	0	+
#Partially deleted in new
chr18	62551202	62552505	ENSG00000279236.1|AC064801.2|lncRNA|chr18:62551202:62552505:+	0	+
#Deleted in new
chr18	62581804	62581896	ENSG00000141664.9|ZCCHC2|pc|chr18:62581804:62581896:+	0	+
#Partially deleted in new
chr18	62584445	62586729	ENSG00000141664.9|ZCCHC2|pc|chr18:62584445:62586729:+	0	+
#Deleted in new
chr18	62587580	62587709	ENSG00000141664.9|ZCCHC2|pc|chr18:62587580:62587709:+	0	+
#Partially deleted in new
chr18	6259159	6260934	ENSG00000264707.1|L3MBTL4-AS1|lncRNA|chr18:6259159:6260934:+	0	+
#Deleted in new
chr18	62889567	62889665	ENSG00000081913.13|PHLPP1|pc|chr18:62889567:62889665:+	0	+
#Partially deleted in new
chr18	62906286	62906390	ENSG00000081913.13|PHLPP1|pc|chr18:62906286:62906390:+	0	+
#Deleted in new
chr18	6326435	6326721	ENSG00000154655.15|L3MBTL4|pc|chr18:6326435:6326721:-	0	-
#Deleted in new
chr18	63381376	63381629	ENSG00000267390.1|AC036176.1|lncRNA|chr18:63381376:63381629:+	0	+
#Partially deleted in new
chr18	63485600	63486018	ENSG00000269989.1|AC036176.3|lncRNA|chr18:63485600:63486018:+	0	+
#Deleted in new
chr18	63490617	63490714	ENSG00000206075.13|SERPINB5|pc|chr18:63490617:63490714:+	0	+
#Deleted in new
chr18	63490626	63490732	ENSG00000206075.13|SERPINB5|pc|chr18:63490626:63490732:+	0	+
#Partially deleted in new
chr1	86350093	86352208	ENSG00000122417.15|ODF2L|pc|chr1:86350093:86352208:-	0	-
#Partially deleted in new
chr1	86350094	86352208	ENSG00000122417.15|ODF2L|pc|chr1:86350094:86352208:-	0	-
#Deleted in new
chr18	6356708	6356807	ENSG00000154655.15|L3MBTL4|pc|chr18:6356708:6356807:-	0	-
#Deleted in new
chr18	63589655	63589712	ENSG00000197641.11|SERPINB13|pc|chr18:63589655:63589712:+	0	+
#Deleted in new
chr18	63589655	63589715	ENSG00000197641.11|SERPINB13|pc|chr18:63589655:63589715:+	0	+
#Deleted in new
chr18	63589655	63589742	ENSG00000197641.11|SERPINB13|pc|chr18:63589655:63589742:+	0	+
#Partially deleted in new
chr18	63589655	63590018	ENSG00000197641.11|SERPINB13|pc|chr18:63589655:63590018:+	0	+
#Duplicated in new
chr18	63596958	63599198	ENSG00000197641.11|SERPINB13|pc|chr18:63596958:63599198:+	0	+
#Duplicated in new
chr18	63596958	63599199	ENSG00000197641.11|SERPINB13|pc|chr18:63596958:63599199:+	0	+
#Deleted in new
chr18	63603939	63604639	ENSG00000197641.11|SERPINB13|pc|chr18:63603939:63604639:+	0	+
#Deleted in new
chr18	63647578	63647642	ENSG00000206072.12|SERPINB11|pc|chr18:63647578:63647642:+	0	+
#Deleted in new
chr1	86368635	86368722	ENSG00000122417.15|ODF2L|pc|chr1:86368635:86368722:-	0	-
#Deleted in new
chr18	63702303	63702377	ENSG00000206072.12|SERPINB11|pc|chr18:63702303:63702377:+	0	+
#Partially deleted in new
chr18	63705260	63705346	ENSG00000206072.12|SERPINB11|pc|chr18:63705260:63705346:+	0	+
#Deleted in new
chr18	63726345	63726432	ENSG00000206072.12|SERPINB11|pc|chr18:63726345:63726432:+	0	+
#Deleted in new
chr18	63949300	63949400	ENSG00000221887.5|HMSD|pc|chr18:63949300:63949400:+	0	+
#Deleted in new
chr18	63949356	63949400	ENSG00000221887.5|HMSD|pc|chr18:63949356:63949400:+	0	+
#Deleted in new
chr1	86395944	86395977	ENSG00000122417.15|ODF2L|pc|chr1:86395944:86395977:-	0	-
#Partially deleted in new
chr18	63960157	63961834	ENSG00000221887.5|HMSD|pc|chr18:63960157:63961834:+	0	+
#Deleted in new
chr1	86396032	86396253	ENSG00000122417.15|ODF2L|pc|chr1:86396032:86396253:-	0	-
#Deleted in new
chr1	86396032	86396262	ENSG00000122417.15|ODF2L|pc|chr1:86396032:86396262:-	0	-
#Deleted in new
chr1	86396032	86396280	ENSG00000122417.15|ODF2L|pc|chr1:86396032:86396280:-	0	-
#Deleted in new
chr1	86396032	86396283	ENSG00000122417.15|ODF2L|pc|chr1:86396032:86396283:-	0	-
#Deleted in new
chr1	86396032	86396286	ENSG00000122417.15|ODF2L|pc|chr1:86396032:86396286:-	0	-
#Deleted in new
chr1	86396032	86396323	ENSG00000122417.15|ODF2L|pc|chr1:86396032:86396323:-	0	-
#Deleted in new
chr1	86396032	86396340	ENSG00000122417.15|ODF2L|pc|chr1:86396032:86396340:-	0	-
#Deleted in new
chr1	86396032	86396342	ENSG00000122417.15|ODF2L|pc|chr1:86396032:86396342:-	0	-
#Deleted in new
chr18	63966405	63966868	ENSG00000283667.1|AC009802.1|lncRNA|chr18:63966405:63966868:-	0	-
#Deleted in new
chr18	63967986	63968273	ENSG00000283667.1|AC009802.1|lncRNA|chr18:63967986:63968273:-	0	-
#Deleted in new
chr18	63968337	63968786	ENSG00000221887.5|HMSD|pc|chr18:63968337:63968786:+	0	+
#Partially deleted in new
chr18	63969322	63970181	ENSG00000283667.1|AC009802.1|lncRNA|chr18:63969322:63970181:-	0	-
#Deleted in new
chr18	63986257	63986653	ENSG00000166401.14|SERPINB8|pc|chr18:63986257:63986653:+	0	+
#Deleted in new
chr18	64004818	64004880	ENSG00000166401.14|SERPINB8|pc|chr18:64004818:64004880:+	0	+
#Deleted in new
chr18	64004818	64005667	ENSG00000166401.14|SERPINB8|pc|chr18:64004818:64005667:+	0	+
#Deleted in new
chr18	64080008	64080402	ENSG00000179676.6|LINC00305|lncRNA|chr18:64080008:64080402:-	0	-
#Deleted in new
chr18	64080301	64080402	ENSG00000179676.6|LINC00305|lncRNA|chr18:64080301:64080402:-	0	-
#Deleted in new
chr18	641319	641451	ENSG00000176912.3|TYMSOS|lncRNA|chr18:641319:641451:-	0	-
#Deleted in new
chr18	641326	641541	ENSG00000079101.16|CLUL1|pc|chr18:641326:641541:+	0	+
#Partially deleted in new
chr18	6414707	6414798	ENSG00000154655.15|L3MBTL4|pc|chr18:6414707:6414798:-	0	-
#Deleted in new
chr18	641471	641541	ENSG00000079101.16|CLUL1|pc|chr18:641471:641541:+	0	+
#Deleted in new
chr18	64249300	64249393	ENSG00000267134.1|LINC01924|lncRNA|chr18:64249300:64249393:+	0	+
#Deleted in new
chr18	64258217	64258519	ENSG00000266952.1|LINC01538|lncRNA|chr18:64258217:64258519:-	0	-
#Deleted in new
chr18	64287794	64287892	ENSG00000267134.1|LINC01924|lncRNA|chr18:64287794:64287892:+	0	+
#Deleted in new
chr18	64415931	64416111	ENSG00000267134.1|LINC01924|lncRNA|chr18:64415931:64416111:+	0	+
#Deleted in new
chr1	86448133	86448468	ENSG00000137975.7|CLCA2|pc|chr1:86448133:86448468:+	0	+
#Deleted in new
chr18	6495535	6495668	ENSG00000266065.1|AP005202.3|lncRNA|chr18:6495535:6495668:+	0	+
#Deleted in new
chr18	649619	649964	ENSG00000176912.3|TYMSOS|lncRNA|chr18:649619:649964:-	0	-
#Deleted in new
chr18	649897	650175	ENSG00000079101.16|CLUL1|pc|chr18:649897:650175:+	0	+
#Deleted in new
chr18	649897	650182	ENSG00000079101.16|CLUL1|pc|chr18:649897:650182:+	0	+
#Deleted in new
chr18	649897	650291	ENSG00000079101.16|CLUL1|pc|chr18:649897:650291:+	0	+
#Deleted in new
chr18	649897	650298	ENSG00000079101.16|CLUL1|pc|chr18:649897:650298:+	0	+
#Deleted in new
chr18	649897	650334	ENSG00000079101.16|CLUL1|pc|chr18:649897:650334:+	0	+
#Deleted in new
chr18	650228	651765	ENSG00000266456.1|AP001178.3|lncRNA|chr18:650228:651765:+	0	+
#Deleted in new
chr18	65125599	65125710	ENSG00000263863.1|AC007948.1|lncRNA|chr18:65125599:65125710:-	0	-
#Deleted in new
chr18	65186158	65186258	ENSG00000264131.1|AC007631.1|lncRNA|chr18:65186158:65186258:+	0	+
#Deleted in new
chr18	652274	652843	ENSG00000266456.1|AP001178.3|lncRNA|chr18:652274:652843:+	0	+
#Deleted in new
chr18	653984	654214	ENSG00000263727.1|AP001178.1|lncRNA|chr18:653984:654214:-	0	-
#Deleted in new
chr18	65424012	65424071	ENSG00000264232.1|LINC01916|lncRNA|chr18:65424012:65424071:+	0	+
#Deleted in new
chr18	65441689	65441823	ENSG00000264232.1|LINC01916|lncRNA|chr18:65441689:65441823:+	0	+
#Deleted in new
chr18	65606089	65606482	ENSG00000265217.1|AC090358.1|lncRNA|chr18:65606089:65606482:+	0	+
#Deleted in new
chr18	65606589	65606767	ENSG00000265217.1|AC090358.1|lncRNA|chr18:65606589:65606767:+	0	+
#Deleted in new
chr18	65651884	65652053	ENSG00000265217.1|AC090358.1|lncRNA|chr18:65651884:65652053:+	0	+
#Deleted in new
chr18	657221	657259	ENSG00000263727.1|AP001178.1|lncRNA|chr18:657221:657259:-	0	-
#Deleted in new
chr18	65866362	65866397	ENSG00000263720.1|AC023394.2|lncRNA|chr18:65866362:65866397:+	0	+
#Deleted in new
chr18	6589446	6589475	ENSG00000265944.1|LINC01387|lncRNA|chr18:6589446:6589475:+	0	+
#Deleted in new
chr18	65920853	65920942	ENSG00000263622.1|AC023394.1|lncRNA|chr18:65920853:65920942:-	0	-
#Deleted in new
chr18	6641970	6642478	ENSG00000261627.1|AP005205.1|lncRNA|chr18:6641970:6642478:-	0	-
#Deleted in new
chr18	66532338	66532712	ENSG00000071991.8|CDH19|pc|chr18:66532338:66532712:-	0	-
#Deleted in new
chr18	66596158	66596303	ENSG00000071991.8|CDH19|pc|chr18:66596158:66596303:-	0	-
#Deleted in new
chr18	667720	667752	ENSG00000176890.15|TYMS|pc|chr18:667720:667752:+	0	+
#Deleted in new
chr1	86693162	86693203	ENSG00000236915.1|AL356270.1|lncRNA|chr1:86693162:86693203:-	0	-
#Partially deleted in new
chr1	86703501	86704462	ENSG00000261737.1|AL049597.2|lncRNA|chr1:86703501:86704462:-	0	-
#Partially deleted in new
chr18	6727052	6728981	ENSG00000279479.1|AP005205.3|lncRNA|chr18:6727052:6728981:+	0	+
#Split in new
chr18	672859	673484	ENSG00000176890.15|TYMS|pc|chr18:672859:673484:+	0	+
#Split in new
chr18	672859	673578	ENSG00000176890.15|TYMS|pc|chr18:672859:673578:+	0	+
#Deleted in new
chr18	673858	674406	ENSG00000132199.18|ENOSF1|pc|chr18:673858:674406:-	0	-
#Deleted in new
chr1	86738660	86738695	ENSG00000097033.14|SH3GLB1|pc|chr1:86738660:86738695:+	0	+
#Deleted in new
chr18	673913	674406	ENSG00000132199.18|ENOSF1|pc|chr18:673913:674406:-	0	-
#Deleted in new
chr18	674000	674406	ENSG00000132199.18|ENOSF1|pc|chr18:674000:674406:-	0	-
#Deleted in new
chr18	674027	674406	ENSG00000132199.18|ENOSF1|pc|chr18:674027:674406:-	0	-
#Deleted in new
chr18	674037	674406	ENSG00000132199.18|ENOSF1|pc|chr18:674037:674406:-	0	-
#Deleted in new
chr18	674038	674406	ENSG00000132199.18|ENOSF1|pc|chr18:674038:674406:-	0	-
#Deleted in new
chr18	674039	674406	ENSG00000132199.18|ENOSF1|pc|chr18:674039:674406:-	0	-
#Deleted in new
chr18	674160	674406	ENSG00000132199.18|ENOSF1|pc|chr18:674160:674406:-	0	-
#Deleted in new
chr18	674180	674406	ENSG00000132199.18|ENOSF1|pc|chr18:674180:674406:-	0	-
#Deleted in new
chr18	674370	674406	ENSG00000132199.18|ENOSF1|pc|chr18:674370:674406:-	0	-
#Deleted in new
chr18	675320	675402	ENSG00000132199.18|ENOSF1|pc|chr18:675320:675402:-	0	-
#Deleted in new
chr18	675320	675560	ENSG00000132199.18|ENOSF1|pc|chr18:675320:675560:-	0	-
#Deleted in new
chr18	67672220	67672364	ENSG00000263594.1|AC022655.1|lncRNA|chr18:67672220:67672364:-	0	-
#Deleted in new
chr18	67672525	67672612	ENSG00000263594.1|AC022655.1|lncRNA|chr18:67672525:67672612:-	0	-
#Deleted in new
chr18	677344	677444	ENSG00000132199.18|ENOSF1|pc|chr18:677344:677444:-	0	-
#Deleted in new
chr18	677742	677872	ENSG00000132199.18|ENOSF1|pc|chr18:677742:677872:-	0	-
#Deleted in new
chr18	677742	677906	ENSG00000132199.18|ENOSF1|pc|chr18:677742:677906:-	0	-
#Deleted in new
chr18	6778945	6779036	ENSG00000088756.12|ARHGAP28|pc|chr18:6778945:6779036:+	0	+
#Deleted in new
chr18	67808504	67809576	ENSG00000265555.1|LINC01903|lncRNA|chr18:67808504:67809576:-	0	-
#Deleted in new
chr18	67813745	67814822	ENSG00000265555.1|LINC01903|lncRNA|chr18:67813745:67814822:-	0	-
#Deleted in new
chr18	678308	678737	ENSG00000132199.18|ENOSF1|pc|chr18:678308:678737:-	0	-
#Deleted in new
chr18	67834418	67834490	ENSG00000265533.1|AC114689.3|lncRNA|chr18:67834418:67834490:+	0	+
#Deleted in new
chr18	67836153	67836258	ENSG00000265533.1|AC114689.3|lncRNA|chr18:67836153:67836258:+	0	+
#Deleted in new
chr18	678695	678737	ENSG00000132199.18|ENOSF1|pc|chr18:678695:678737:-	0	-
#Deleted in new
chr18	67874086	67874256	ENSG00000265533.1|AC114689.3|lncRNA|chr18:67874086:67874256:+	0	+
#Partially deleted in new
chr18	6788493	6791670	ENSG00000088756.12|ARHGAP28|pc|chr18:6788493:6791670:+	0	+
#Deleted in new
chr18	67897179	67899619	ENSG00000265533.1|AC114689.3|lncRNA|chr18:67897179:67899619:+	0	+
#Deleted in new
chr18	67940948	67940970	ENSG00000264634.1|AC100844.1|lncRNA|chr18:67940948:67940970:+	0	+
#Deleted in new
chr18	67950688	67950838	ENSG00000264634.1|AC100844.1|lncRNA|chr18:67950688:67950838:+	0	+
#Deleted in new
chr18	67956158	67956426	ENSG00000264634.1|AC100844.1|lncRNA|chr18:67956158:67956426:+	0	+
#Deleted in new
chr1	868070	868675	ENSG00000230368.2|FAM41C|lncRNA|chr1:868070:868675:-	0	-
#Deleted in new
chr18	68102115	68102155	ENSG00000264869.1|AC068112.1|lncRNA|chr18:68102115:68102155:+	0	+
#Deleted in new
chr18	68106209	68106374	ENSG00000264869.1|AC068112.1|lncRNA|chr18:68106209:68106374:+	0	+
#Deleted in new
chr18	68113629	68113683	ENSG00000264869.1|AC068112.1|lncRNA|chr18:68113629:68113683:+	0	+
#Deleted in new
chr18	68114290	68114377	ENSG00000264869.1|AC068112.1|lncRNA|chr18:68114290:68114377:+	0	+
#Deleted in new
chr1	868239	868530	ENSG00000230368.2|FAM41C|lncRNA|chr1:868239:868530:-	0	-
#Deleted in new
chr18	68258338	68258565	ENSG00000264699.1|LINC01912|lncRNA|chr18:68258338:68258565:-	0	-
#Deleted in new
chr18	68260280	68260374	ENSG00000264699.1|LINC01912|lncRNA|chr18:68260280:68260374:-	0	-
#Deleted in new
chr18	68261624	68261670	ENSG00000264699.1|LINC01912|lncRNA|chr18:68261624:68261670:-	0	-
#Deleted in new
chr18	68263498	68263603	ENSG00000264699.1|LINC01912|lncRNA|chr18:68263498:68263603:-	0	-
#Deleted in new
chr18	68264803	68264827	ENSG00000264699.1|LINC01912|lncRNA|chr18:68264803:68264827:-	0	-
#Deleted in new
chr18	6834474	6834539	ENSG00000088756.12|ARHGAP28|pc|chr18:6834474:6834539:+	0	+
#Deleted in new
chr18	6834479	6834539	ENSG00000088756.12|ARHGAP28|pc|chr18:6834479:6834539:+	0	+
#Deleted in new
chr1	868402	868675	ENSG00000230368.2|FAM41C|lncRNA|chr1:868402:868675:-	0	-
#Deleted in new
chr18	68427029	68427326	ENSG00000265425.1|AC005909.1|lncRNA|chr18:68427029:68427326:+	0	+
#Deleted in new
chr18	68432956	68433014	ENSG00000265425.1|AC005909.1|lncRNA|chr18:68432956:68433014:+	0	+
#Deleted in new
chr18	68436410	68436461	ENSG00000265425.1|AC005909.1|lncRNA|chr18:68436410:68436461:+	0	+
#Deleted in new
chr18	68436569	68436918	ENSG00000265425.1|AC005909.1|lncRNA|chr18:68436569:68436918:+	0	+
#Deleted in new
chr1	868626	868675	ENSG00000230368.2|FAM41C|lncRNA|chr1:868626:868675:-	0	-
#Deleted in new
chr18	68681292	68681322	ENSG00000166479.9|TMX3|pc|chr18:68681292:68681322:-	0	-
#Deleted in new
chr18	68706279	68706408	ENSG00000166479.9|TMX3|pc|chr18:68706279:68706408:-	0	-
#Deleted in new
chr18	68716527	68716594	ENSG00000150636.17|CCDC102B|pc|chr18:68716527:68716594:+	0	+
#Deleted in new
chr18	68718003	68718130	ENSG00000150636.17|CCDC102B|pc|chr18:68718003:68718130:+	0	+
#Deleted in new
chr18	68721081	68721560	ENSG00000276092.1|AC040896.1|lncRNA|chr18:68721081:68721560:+	0	+
#Deleted in new
chr18	68753178	68753396	ENSG00000263637.1|AC022035.1|lncRNA|chr18:68753178:68753396:-	0	-
#Deleted in new
chr18	68753295	68755005	ENSG00000150636.17|CCDC102B|pc|chr18:68753295:68755005:+	0	+
#Deleted in new
chr18	68754499	68754583	ENSG00000263637.1|AC022035.1|lncRNA|chr18:68754499:68754583:-	0	-
#Partially deleted in new
chr18	687672	688608	ENSG00000132199.18|ENOSF1|pc|chr18:687672:688608:-	0	-
#Deleted in new
chr18	68798079	68798181	ENSG00000150636.17|CCDC102B|pc|chr18:68798079:68798181:+	0	+
#Deleted in new
chr18	68798414	68798452	ENSG00000150636.17|CCDC102B|pc|chr18:68798414:68798452:+	0	+
#Deleted in new
chr18	68823365	68823416	ENSG00000150636.17|CCDC102B|pc|chr18:68823365:68823416:+	0	+
#Deleted in new
chr18	68823373	68823416	ENSG00000150636.17|CCDC102B|pc|chr18:68823373:68823416:+	0	+
#Partially deleted in new
chr18	68836748	68837040	ENSG00000150636.17|CCDC102B|pc|chr18:68836748:68837040:+	0	+
#Partially deleted in new
chr18	68836748	68837369	ENSG00000150636.17|CCDC102B|pc|chr18:68836748:68837369:+	0	+
#Partially deleted in new
chr18	68836763	68837369	ENSG00000150636.17|CCDC102B|pc|chr18:68836763:68837369:+	0	+
#Deleted in new
chr1	86887155	86887196	ENSG00000183291.15|SELENOF|pc|chr1:86887155:86887196:-	0	-
#Deleted in new
chr18	68874668	68874709	ENSG00000150636.17|CCDC102B|pc|chr18:68874668:68874709:+	0	+
#Deleted in new
chr18	68874668	68874785	ENSG00000150636.17|CCDC102B|pc|chr18:68874668:68874785:+	0	+
#Deleted in new
chr18	68874668	68874965	ENSG00000150636.17|CCDC102B|pc|chr18:68874668:68874965:+	0	+
#Deleted in new
chr18	68897218	68897428	ENSG00000150636.17|CCDC102B|pc|chr18:68897218:68897428:+	0	+
#Deleted in new
chr18	68897218	68897632	ENSG00000150636.17|CCDC102B|pc|chr18:68897218:68897632:+	0	+
#Deleted in new
chr18	68897577	68897793	ENSG00000150636.17|CCDC102B|pc|chr18:68897577:68897793:+	0	+
#Deleted in new
chr18	68899780	68900271	ENSG00000264472.4|AC096708.3|lncRNA|chr18:68899780:68900271:-	0	-
#Deleted in new
chr18	68899784	68900237	ENSG00000264472.4|AC096708.3|lncRNA|chr18:68899784:68900237:-	0	-
#Deleted in new
chr18	68902187	68902255	ENSG00000264472.4|AC096708.3|lncRNA|chr18:68902187:68902255:-	0	-
#Deleted in new
chr18	68908047	68908599	ENSG00000273584.1|AC096708.4|lncRNA|chr18:68908047:68908599:+	0	+
#Deleted in new
chr18	6894834	6894891	ENSG00000088756.12|ARHGAP28|pc|chr18:6894834:6894891:+	0	+
#Deleted in new
chr18	69010933	69011104	ENSG00000150636.17|CCDC102B|pc|chr18:69010933:69011104:+	0	+
#Deleted in new
chr18	69010933	69011224	ENSG00000150636.17|CCDC102B|pc|chr18:69010933:69011224:+	0	+
#Deleted in new
chr18	69054029	69055189	ENSG00000150636.17|CCDC102B|pc|chr18:69054029:69055189:+	0	+
#Partially deleted in new
chr18	6919495	6920932	ENSG00000265933.5|LINC00668|lncRNA|chr18:6919495:6920932:-	0	-
#Partially deleted in new
chr18	69212276	69214350	ENSG00000264705.1|AC090337.1|lncRNA|chr18:69212276:69214350:+	0	+
#Deleted in new
chr18	6925264	6925325	ENSG00000265933.5|LINC00668|lncRNA|chr18:6925264:6925325:-	0	-
#Deleted in new
chr18	6925476	6925718	ENSG00000265933.5|LINC00668|lncRNA|chr18:6925476:6925718:-	0	-
#Split in new
chr18	6925477	6927584	ENSG00000265933.5|LINC00668|lncRNA|chr18:6925477:6927584:-	0	-
#Deleted in new
chr18	6926071	6926225	ENSG00000265933.5|LINC00668|lncRNA|chr18:6926071:6926225:-	0	-
#Deleted in new
chr18	6926439	6926558	ENSG00000265933.5|LINC00668|lncRNA|chr18:6926439:6926558:-	0	-
#Deleted in new
chr18	6926656	6926990	ENSG00000265933.5|LINC00668|lncRNA|chr18:6926656:6926990:-	0	-
#Split in new
chr18	6926656	6927584	ENSG00000265933.5|LINC00668|lncRNA|chr18:6926656:6927584:-	0	-
#Deleted in new
chr18	6928119	6928219	ENSG00000265933.5|LINC00668|lncRNA|chr18:6928119:6928219:-	0	-
#Deleted in new
chr18	6928348	6928719	ENSG00000265933.5|LINC00668|lncRNA|chr18:6928348:6928719:-	0	-
#Deleted in new
chr18	6928436	6928572	ENSG00000265933.5|LINC00668|lncRNA|chr18:6928436:6928572:-	0	-
#Deleted in new
chr18	6928850	6928968	ENSG00000265933.5|LINC00668|lncRNA|chr18:6928850:6928968:-	0	-
#Deleted in new
chr18	6929250	6929836	ENSG00000265933.5|LINC00668|lncRNA|chr18:6929250:6929836:-	0	-
#Deleted in new
chr18	6929496	6929560	ENSG00000265933.5|LINC00668|lncRNA|chr18:6929496:6929560:-	0	-
#Deleted in new
chr18	6929738	6929805	ENSG00000265933.5|LINC00668|lncRNA|chr18:6929738:6929805:-	0	-
#Deleted in new
chr18	6929782	6929805	ENSG00000265933.5|LINC00668|lncRNA|chr18:6929782:6929805:-	0	-
#Deleted in new
chr18	6929782	6929869	ENSG00000265933.5|LINC00668|lncRNA|chr18:6929782:6929869:-	0	-
#Deleted in new
chr18	6929914	6929962	ENSG00000265933.5|LINC00668|lncRNA|chr18:6929914:6929962:-	0	-
#Deleted in new
chr18	6929914	6929966	ENSG00000265933.5|LINC00668|lncRNA|chr18:6929914:6929966:-	0	-
#Deleted in new
chr1	86934411	86934891	ENSG00000267734.1|AL121989.1|lncRNA|chr1:86934411:86934891:-	0	-
#Deleted in new
chr18	693881	693908	ENSG00000132199.18|ENOSF1|pc|chr18:693881:693908:-	0	-
#Deleted in new
chr18	694247	694334	ENSG00000132199.18|ENOSF1|pc|chr18:694247:694334:-	0	-
#Deleted in new
chr1	869527	869575	ENSG00000230368.2|FAM41C|lncRNA|chr1:869527:869575:-	0	-
#Deleted in new
chr18	6954676	6954917	ENSG00000265069.1|AP002409.1|lncRNA|chr18:6954676:6954917:+	0	+
#Deleted in new
chr1	86956483	86956572	ENSG00000153936.16|HS2ST1|pc|chr1:86956483:86956572:+	0	+
#Deleted in new
chr1	86958439	86958507	ENSG00000153936.16|HS2ST1|pc|chr1:86958439:86958507:+	0	+
#Partially deleted in new
chr18	6959340	6960695	ENSG00000101680.14|LAMA1|pc|chr18:6959340:6960695:-	0	-
#Deleted in new
chr18	69618543	69618694	ENSG00000265643.1|AC119868.2|lncRNA|chr18:69618543:69618694:-	0	-
#Deleted in new
chr18	6963884	6964137	ENSG00000101680.14|LAMA1|pc|chr18:6963884:6964137:-	0	-
#Deleted in new
chr18	69643674	69643790	ENSG00000206052.10|DOK6|pc|chr18:69643674:69643790:+	0	+
#Deleted in new
chr18	69643687	69643790	ENSG00000206052.10|DOK6|pc|chr18:69643687:69643790:+	0	+
#Deleted in new
chr18	69659836	69663413	ENSG00000279221.1|AC068254.2|lncRNA|chr18:69659836:69663413:+	0	+
#Deleted in new
chr18	69704977	69705197	ENSG00000266840.1|AC068254.1|lncRNA|chr18:69704977:69705197:-	0	-
#Deleted in new
chr18	69777888	69777949	ENSG00000206052.10|DOK6|pc|chr18:69777888:69777949:+	0	+
#Partially deleted in new
chr18	69831157	69831206	ENSG00000150637.8|CD226|pc|chr18:69831157:69831206:-	0	-
#Deleted in new
chr18	69832535	69832739	ENSG00000150637.8|CD226|pc|chr18:69832535:69832739:-	0	-
#Deleted in new
chr18	69944483	69944568	ENSG00000150637.8|CD226|pc|chr18:69944483:69944568:-	0	-
#Deleted in new
chr18	70007375	70009032	ENSG00000176225.13|RTTN|pc|chr18:70007375:70009032:-	0	-
#Deleted in new
chr18	70031301	70031414	ENSG00000176225.13|RTTN|pc|chr18:70031301:70031414:-	0	-
#Deleted in new
chr18	70061311	70061400	ENSG00000176225.13|RTTN|pc|chr18:70061311:70061400:-	0	-
#Deleted in new
chr1	870085	870201	ENSG00000230368.2|FAM41C|lncRNA|chr1:870085:870201:-	0	-
#Partially deleted in new
chr18	70128357	70131932	ENSG00000176225.13|RTTN|pc|chr18:70128357:70131932:-	0	-
#Deleted in new
chr18	70314189	70314240	ENSG00000170677.5|SOCS6|pc|chr18:70314189:70314240:+	0	+
#Partially deleted in new
chr18	70348971	70349114	ENSG00000266258.1|LINC01909|lncRNA|chr18:70348971:70349114:+	0	+
#Deleted in new
chr18	70351978	70352119	ENSG00000266258.1|LINC01909|lncRNA|chr18:70351978:70352119:+	0	+
#Deleted in new
chr18	70351978	70352459	ENSG00000266258.1|LINC01909|lncRNA|chr18:70351978:70352459:+	0	+
#Deleted in new
chr18	70384470	70384591	ENSG00000266278.1|LINC01910|lncRNA|chr18:70384470:70384591:-	0	-
#Deleted in new
chr18	70630533	70630689	ENSG00000263417.4|GTSCR1|lncRNA|chr18:70630533:70630689:-	0	-
#Deleted in new
chr18	706469	706578	ENSG00000132199.18|ENOSF1|pc|chr18:706469:706578:-	0	-
#Deleted in new
chr18	706469	706789	ENSG00000132199.18|ENOSF1|pc|chr18:706469:706789:-	0	-
#Partially deleted in new
chr18	70650609	70650744	ENSG00000263417.4|GTSCR1|lncRNA|chr18:70650609:70650744:-	0	-
#Deleted in new
chr18	706522	706796	ENSG00000265490.1|AP001178.2|lncRNA|chr18:706522:706796:+	0	+
#Deleted in new
chr18	707596	707648	ENSG00000265490.1|AP001178.2|lncRNA|chr18:707596:707648:+	0	+
#Deleted in new
chr18	7076816	7076908	ENSG00000264475.1|AP005062.1|lncRNA|chr18:7076816:7076908:+	0	+
#Deleted in new
chr18	7079319	7079385	ENSG00000264475.1|AP005062.1|lncRNA|chr18:7079319:7079385:+	0	+
#Deleted in new
chr18	71000476	71000624	ENSG00000265781.1|AC090415.2|lncRNA|chr18:71000476:71000624:-	0	-
#Deleted in new
chr18	71011439	71011490	ENSG00000265781.1|AC090415.2|lncRNA|chr18:71011439:71011490:-	0	-
#Deleted in new
chr18	71216703	71216901	ENSG00000265484.1|AC091691.2|lncRNA|chr18:71216703:71216901:-	0	-
#Deleted in new
chr18	71223056	71223157	ENSG00000265484.1|AC091691.2|lncRNA|chr18:71223056:71223157:-	0	-
#Deleted in new
chr18	71224130	71224317	ENSG00000265484.1|AC091691.2|lncRNA|chr18:71224130:71224317:-	0	-
#Partially deleted in new
chr18	71237021	71237102	ENSG00000265484.1|AC091691.2|lncRNA|chr18:71237021:71237102:-	0	-
#Duplicated in new
chr18	712503	712624	ENSG00000132199.18|ENOSF1|pc|chr18:712503:712624:-	0	-
#Duplicated in new
chr18	712503	712648	ENSG00000132199.18|ENOSF1|pc|chr18:712503:712648:-	0	-
#Duplicated in new
chr18	712503	712650	ENSG00000132199.18|ENOSF1|pc|chr18:712503:712650:-	0	-
#Duplicated in new
chr18	712503	712662	ENSG00000132199.18|ENOSF1|pc|chr18:712503:712662:-	0	-
#Duplicated in new
chr18	712503	712676	ENSG00000132199.18|ENOSF1|pc|chr18:712503:712676:-	0	-
#Deleted in new
chr1	87129764	87129994	ENSG00000267272.5|LINC01140|lncRNA|chr1:87129764:87129994:+	0	+
#Deleted in new
chr1	87129773	87129994	ENSG00000267272.5|LINC01140|lncRNA|chr1:87129773:87129994:+	0	+
#Deleted in new
chr1	87129853	87129994	ENSG00000267272.5|LINC01140|lncRNA|chr1:87129853:87129994:+	0	+
#Deleted in new
chr1	87129869	87129994	ENSG00000267272.5|LINC01140|lncRNA|chr1:87129869:87129994:+	0	+
#Partially deleted in new
chr18	71519961	71521082	ENSG00000260676.5|LINC01541|lncRNA|chr18:71519961:71521082:-	0	-
#Partially deleted in new
chr18	71520248	71521082	ENSG00000260676.5|LINC01541|lncRNA|chr18:71520248:71521082:-	0	-
#Deleted in new
chr18	71521988	71523256	ENSG00000260676.5|LINC01541|lncRNA|chr18:71521988:71523256:-	0	-
#Deleted in new
chr18	71548598	71548696	ENSG00000260676.5|LINC01541|lncRNA|chr18:71548598:71548696:-	0	-
#Deleted in new
chr18	71578806	71578937	ENSG00000260676.5|LINC01541|lncRNA|chr18:71578806:71578937:-	0	-
#Deleted in new
chr18	71578806	71578956	ENSG00000260676.5|LINC01541|lncRNA|chr18:71578806:71578956:-	0	-
#Deleted in new
chr1	87162021	87162137	ENSG00000267272.5|LINC01140|lncRNA|chr1:87162021:87162137:+	0	+
#Deleted in new
chr18	71732614	71732847	ENSG00000265352.1|LINC01899|lncRNA|chr18:71732614:71732847:-	0	-
#Deleted in new
chr18	71735154	71735188	ENSG00000265352.1|LINC01899|lncRNA|chr18:71735154:71735188:-	0	-
#Deleted in new
chr18	71782075	71782275	ENSG00000265352.1|LINC01899|lncRNA|chr18:71782075:71782275:-	0	-
#Deleted in new
chr18	71782189	71782226	ENSG00000265352.1|LINC01899|lncRNA|chr18:71782189:71782226:-	0	-
#Deleted in new
chr18	71782189	71782281	ENSG00000265352.1|LINC01899|lncRNA|chr18:71782189:71782281:-	0	-
#Deleted in new
chr18	71786980	71787075	ENSG00000265352.1|LINC01899|lncRNA|chr18:71786980:71787075:-	0	-
#Deleted in new
chr18	71788111	71788128	ENSG00000265352.1|LINC01899|lncRNA|chr18:71788111:71788128:-	0	-
#Deleted in new
chr18	71890408	71890455	ENSG00000265995.1|AC069114.1|lncRNA|chr18:71890408:71890455:-	0	-
#Deleted in new
chr18	71937265	71937406	ENSG00000265995.1|AC069114.1|lncRNA|chr18:71937265:71937406:-	0	-
#Deleted in new
chr18	71944478	71944577	ENSG00000265995.1|AC069114.1|lncRNA|chr18:71944478:71944577:-	0	-
#Deleted in new
chr1	87216932	87217000	ENSG00000284240.1|AC099062.1|lncRNA|chr1:87216932:87217000:+	0	+
#Partially deleted in new
chr1	87221096	87221148	ENSG00000284240.1|AC099062.1|lncRNA|chr1:87221096:87221148:+	0	+
#Deleted in new
chr1	87243614	87243637	ENSG00000284240.1|AC099062.1|lncRNA|chr1:87243614:87243637:+	0	+
#Deleted in new
chr18	72620211	72620590	ENSG00000141668.9|CBLN2|pc|chr18:72620211:72620590:-	0	-
#Deleted in new
chr18	72620467	72620590	ENSG00000141668.9|CBLN2|pc|chr18:72620467:72620590:-	0	-
#Deleted in new
chr18	72880086	72880234	ENSG00000263958.1|AC091138.1|lncRNA|chr18:72880086:72880234:+	0	+
#Partially deleted in new
chr18	73151240	73151522	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73151240:73151522:-	0	-
#Deleted in new
chr18	73154057	73155935	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73154057:73155935:-	0	-
#Deleted in new
chr18	73155819	73155935	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73155819:73155935:-	0	-
#Partially deleted in new
chr18	73158821	73161973	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73158821:73161973:-	0	-
#Deleted in new
chr18	73159540	73159664	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73159540:73159664:-	0	-
#Deleted in new
chr18	73169846	73170035	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73169846:73170035:-	0	-
#Deleted in new
chr18	73172837	73172962	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73172837:73172962:-	0	-
#Deleted in new
chr18	73250292	73250695	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73250292:73250695:-	0	-
#Deleted in new
chr18	73255597	73255918	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73255597:73255918:-	0	-
#Deleted in new
chr18	73255812	73255918	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73255812:73255918:-	0	-
#Deleted in new
chr18	73264239	73264303	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73264239:73264303:-	0	-
#Deleted in new
chr18	73264239	73264445	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73264239:73264445:-	0	-
#Deleted in new
chr18	73264239	73264454	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73264239:73264454:-	0	-
#Deleted in new
chr18	73264239	73264468	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73264239:73264468:-	0	-
#Deleted in new
chr18	73264239	73264474	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73264239:73264474:-	0	-
#Deleted in new
chr18	73264239	73264480	ENSG00000263711.5|AC079062.1|lncRNA|chr18:73264239:73264480:-	0	-
#Deleted in new
chr18	73311	73517	ENSG00000282965.1|AP001005.4|lncRNA|chr18:73311:73517:-	0	-
#Deleted in new
chr18	73311	73545	ENSG00000282965.1|AP001005.4|lncRNA|chr18:73311:73545:-	0	-
#Deleted in new
chr18	73324940	73325193	ENSG00000261780.2|AC105243.1|lncRNA|chr18:73324940:73325193:+	0	+
#Deleted in new
chr18	73326740	73327188	ENSG00000261780.2|AC105243.1|lncRNA|chr18:73326740:73327188:+	0	+
#Deleted in new
chr18	73332271	73332581	ENSG00000261780.2|AC105243.1|lncRNA|chr18:73332271:73332581:+	0	+
#Deleted in new
chr18	73332462	73332581	ENSG00000261780.2|AC105243.1|lncRNA|chr18:73332462:73332581:+	0	+
#Deleted in new
chr18	73332464	73332581	ENSG00000261780.2|AC105243.1|lncRNA|chr18:73332464:73332581:+	0	+
#Partially deleted in new
chr18	73333373	73333842	ENSG00000261780.2|AC105243.1|lncRNA|chr18:73333373:73333842:+	0	+
#Deleted in new
chr18	73914404	73914673	ENSG00000263655.1|AC090125.1|lncRNA|chr18:73914404:73914673:-	0	-
#Deleted in new
chr18	73914926	73915029	ENSG00000263655.1|AC090125.1|lncRNA|chr18:73914926:73915029:-	0	-
#Deleted in new
chr18	739337	739444	ENSG00000264339.1|AP001020.1|lncRNA|chr18:739337:739444:+	0	+
#Deleted in new
chr18	74034040	74034161	ENSG00000263655.1|AC090125.1|lncRNA|chr18:74034040:74034161:-	0	-
#Deleted in new
chr18	74076193	74076530	ENSG00000141665.11|FBXO15|pc|chr18:74076193:74076530:-	0	-
#Deleted in new
chr18	74078503	74078684	ENSG00000141665.11|FBXO15|pc|chr18:74078503:74078684:-	0	-
#Deleted in new
chr18	74097013	74097156	ENSG00000141665.11|FBXO15|pc|chr18:74097013:74097156:-	0	-
#Deleted in new
chr18	74097013	74097231	ENSG00000141665.11|FBXO15|pc|chr18:74097013:74097231:-	0	-
#Deleted in new
chr18	74097509	74100068	ENSG00000141665.11|FBXO15|pc|chr18:74097509:74100068:-	0	-
#Deleted in new
chr18	74130706	74130799	ENSG00000141665.11|FBXO15|pc|chr18:74130706:74130799:-	0	-
#Deleted in new
chr18	74140723	74140773	ENSG00000141665.11|FBXO15|pc|chr18:74140723:74140773:-	0	-
#Deleted in new
chr18	74211390	74211563	ENSG00000260569.2|AC090398.1|lncRNA|chr18:74211390:74211563:-	0	-
#Deleted in new
chr18	74211390	74212569	ENSG00000260569.2|AC090398.1|lncRNA|chr18:74211390:74212569:-	0	-
#Partially deleted in new
chr18	74240271	74240555	ENSG00000260569.2|AC090398.1|lncRNA|chr18:74240271:74240555:-	0	-
#Deleted in new
chr18	74315812	74316109	ENSG00000206043.6|C18orf63|pc|chr18:74315812:74316109:+	0	+
#Deleted in new
chr18	74409414	74410133	ENSG00000259779.1|LINC01922|lncRNA|chr18:74409414:74410133:+	0	+
#Deleted in new
chr18	74409447	74409531	ENSG00000259779.1|LINC01922|lncRNA|chr18:74409447:74409531:+	0	+
#Deleted in new
chr18	74495815	74495923	ENSG00000133313.14|CNDP2|pc|chr18:74495815:74495923:+	0	+
#Deleted in new
chr18	74497508	74497595	ENSG00000133313.14|CNDP2|pc|chr18:74497508:74497595:+	0	+
#Deleted in new
chr18	74497508	74497726	ENSG00000133313.14|CNDP2|pc|chr18:74497508:74497726:+	0	+
#Deleted in new
chr18	74497508	74498024	ENSG00000133313.14|CNDP2|pc|chr18:74497508:74498024:+	0	+
#Deleted in new
chr18	74499341	74499375	ENSG00000133313.14|CNDP2|pc|chr18:74499341:74499375:+	0	+
#Partially deleted in new
chr18	74499420	74499482	ENSG00000133313.14|CNDP2|pc|chr18:74499420:74499482:+	0	+
#Deleted in new
chr18	74501101	74501238	ENSG00000133313.14|CNDP2|pc|chr18:74501101:74501238:+	0	+
#Deleted in new
chr18	74504765	74505248	ENSG00000276934.1|AC009704.2|lncRNA|chr18:74504765:74505248:+	0	+
#Deleted in new
chr18	74512012	74512100	ENSG00000133313.14|CNDP2|pc|chr18:74512012:74512100:+	0	+
#Partially deleted in new
chr18	74519998	74523454	ENSG00000133313.14|CNDP2|pc|chr18:74519998:74523454:+	0	+
#Partially deleted in new
chr18	74520151	74521104	ENSG00000133313.14|CNDP2|pc|chr18:74520151:74521104:+	0	+
#Deleted in new
chr18	74534439	74534691	ENSG00000150656.14|CNDP1|pc|chr18:74534439:74534691:+	0	+
#Deleted in new
chr18	74534502	74534691	ENSG00000150656.14|CNDP1|pc|chr18:74534502:74534691:+	0	+
#Deleted in new
chr18	74534601	74534691	ENSG00000150656.14|CNDP1|pc|chr18:74534601:74534691:+	0	+
#Partially deleted in new
chr18	74561380	74561607	ENSG00000264340.1|AC009704.1|lncRNA|chr18:74561380:74561607:-	0	-
#Deleted in new
chr18	74574763	74574816	ENSG00000150656.14|CNDP1|pc|chr18:74574763:74574816:+	0	+
#Deleted in new
chr18	74576145	74576577	ENSG00000150656.14|CNDP1|pc|chr18:74576145:74576577:+	0	+
#Deleted in new
chr18	74591773	74593839	ENSG00000264247.1|LINC00909|lncRNA|chr18:74591773:74593839:-	0	-
#Deleted in new
chr18	74593148	74593839	ENSG00000264247.1|LINC00909|lncRNA|chr18:74593148:74593839:-	0	-
#Deleted in new
chr18	74593200	74593839	ENSG00000264247.1|LINC00909|lncRNA|chr18:74593200:74593839:-	0	-
#Deleted in new
chr18	74593695	74593839	ENSG00000264247.1|LINC00909|lncRNA|chr18:74593695:74593839:-	0	-
#Partially deleted in new
chr18	74596427	74597824	ENSG00000264247.1|LINC00909|lncRNA|chr18:74596427:74597824:-	0	-
#Deleted in new
chr18	74905296	74905938	ENSG00000215421.9|ZNF407|pc|chr18:74905296:74905938:+	0	+
#Deleted in new
chr18	75060154	75060300	ENSG00000215421.9|ZNF407|pc|chr18:75060154:75060300:+	0	+
#Deleted in new
chr18	75073542	75074205	ENSG00000273669.1|AC015819.1|lncRNA|chr18:75073542:75074205:+	0	+
#Partially deleted in new
chr18	75103586	75106260	ENSG00000278911.1|AC015819.3|lncRNA|chr18:75103586:75106260:-	0	-
#Partially deleted in new
chr18	75387055	75387596	ENSG00000276993.1|AC116003.3|lncRNA|chr18:75387055:75387596:+	0	+
#Partially deleted in new
chr18	75418006	75418093	ENSG00000264116.4|AC116003.1|lncRNA|chr18:75418006:75418093:+	0	+
#Deleted in new
chr18	75436863	75436957	ENSG00000266774.1|AC116003.2|lncRNA|chr18:75436863:75436957:-	0	-
#Deleted in new
chr18	75712015	75712385	ENSG00000261194.1|LINC01898|lncRNA|chr18:75712015:75712385:-	0	-
#Deleted in new
chr18	75844924	75845137	ENSG00000266460.1|AC021506.1|lncRNA|chr18:75844924:75845137:-	0	-
#Deleted in new
chr18	76015801	76015861	ENSG00000264108.1|AC090457.1|lncRNA|chr18:76015801:76015861:-	0	-
#Deleted in new
chr18	76122997	76123699	ENSG00000263547.1|AC011095.1|lncRNA|chr18:76122997:76123699:+	0	+
#Deleted in new
chr18	76123424	76123699	ENSG00000263547.1|AC011095.1|lncRNA|chr18:76123424:76123699:+	0	+
#Deleted in new
chr18	76123943	76124003	ENSG00000263547.1|AC011095.1|lncRNA|chr18:76123943:76124003:+	0	+
#Partially deleted in new
chr18	76144756	76145255	ENSG00000263547.1|AC011095.1|lncRNA|chr18:76144756:76145255:+	0	+
#Deleted in new
chr18	76173303	76173627	ENSG00000266743.1|AC103808.6|lncRNA|chr18:76173303:76173627:-	0	-
#Deleted in new
chr18	76177598	76177738	ENSG00000266743.1|AC103808.6|lncRNA|chr18:76177598:76177738:-	0	-
#Deleted in new
chr18	76209509	76209532	ENSG00000264260.1|LINC01893|lncRNA|chr18:76209509:76209532:+	0	+
#Deleted in new
chr18	76209743	76209878	ENSG00000264260.1|LINC01893|lncRNA|chr18:76209743:76209878:+	0	+
#Deleted in new
chr18	76214255	76214456	ENSG00000264260.1|LINC01893|lncRNA|chr18:76214255:76214456:+	0	+
#Deleted in new
chr18	76227989	76228055	ENSG00000264595.1|AC103808.2|lncRNA|chr18:76227989:76228055:-	0	-
#Deleted in new
chr18	76228902	76229003	ENSG00000264595.1|AC103808.2|lncRNA|chr18:76228902:76229003:-	0	-
#Deleted in new
chr18	76247724	76247844	ENSG00000266014.1|AC103808.4|lncRNA|chr18:76247724:76247844:+	0	+
#Deleted in new
chr18	76372716	76372911	ENSG00000263982.1|AC009716.1|lncRNA|chr18:76372716:76372911:+	0	+
#Deleted in new
chr18	76378072	76378275	ENSG00000263982.1|AC009716.1|lncRNA|chr18:76378072:76378275:+	0	+
#Deleted in new
chr18	76385641	76389406	ENSG00000280205.1|AC009716.2|lncRNA|chr18:76385641:76389406:-	0	-
#Deleted in new
chr18	76463027	76463141	ENSG00000101493.10|ZNF516|pc|chr18:76463027:76463141:-	0	-
#Partially deleted in new
chr18	76528654	76528963	ENSG00000263812.5|LINC00908|lncRNA|chr18:76528654:76528963:+	0	+
#Deleted in new
chr18	76528719	76528963	ENSG00000263812.5|LINC00908|lncRNA|chr18:76528719:76528963:+	0	+
#Deleted in new
chr18	76528823	76528963	ENSG00000263812.5|LINC00908|lncRNA|chr18:76528823:76528963:+	0	+
#Deleted in new
chr18	76528916	76528963	ENSG00000263812.5|LINC00908|lncRNA|chr18:76528916:76528963:+	0	+
#Deleted in new
chr18	76530383	76530464	ENSG00000263812.5|LINC00908|lncRNA|chr18:76530383:76530464:+	0	+
#Deleted in new
chr18	76557974	76558220	ENSG00000263812.5|LINC00908|lncRNA|chr18:76557974:76558220:+	0	+
#Deleted in new
chr18	76557974	76558592	ENSG00000263812.5|LINC00908|lncRNA|chr18:76557974:76558592:+	0	+
#Partially deleted in new
chr18	76557974	76559826	ENSG00000263812.5|LINC00908|lncRNA|chr18:76557974:76559826:+	0	+
#Deleted in new
chr18	76561862	76562213	ENSG00000263812.5|LINC00908|lncRNA|chr18:76561862:76562213:+	0	+
#Deleted in new
chr18	76602737	76602885	ENSG00000263812.5|LINC00908|lncRNA|chr18:76602737:76602885:+	0	+
#Partially deleted in new
chr18	76622756	76625940	ENSG00000266256.1|LINC00683|lncRNA|chr18:76622756:76625940:+	0	+
#Deleted in new
chr18	76634881	76634966	ENSG00000266312.1|LINC01927|lncRNA|chr18:76634881:76634966:-	0	-
#Deleted in new
chr18	76794731	76795658	ENSG00000264278.1|AC027575.2|lncRNA|chr18:76794731:76795658:-	0	-
#Deleted in new
chr18	76805150	76805736	ENSG00000278107.1|AC027575.4|lncRNA|chr18:76805150:76805736:-	0	-
#Deleted in new
chr18	76816754	76816842	ENSG00000264278.1|AC027575.2|lncRNA|chr18:76816754:76816842:-	0	-
#Deleted in new
chr18	76898091	76898172	ENSG00000130856.15|ZNF236|pc|chr18:76898091:76898172:+	0	+
#Deleted in new
chr18	76974689	76975053	ENSG00000266844.1|AC093330.1|lncRNA|chr18:76974689:76975053:+	0	+
#Deleted in new
chr18	76976941	76977186	ENSG00000266844.1|AC093330.1|lncRNA|chr18:76976941:76977186:+	0	+
#Deleted in new
chr18	76977061	76977265	ENSG00000266844.1|AC093330.1|lncRNA|chr18:76977061:76977265:+	0	+
#Deleted in new
chr18	76981315	76981484	ENSG00000266844.1|AC093330.1|lncRNA|chr18:76981315:76981484:+	0	+
#Deleted in new
chr18	76983726	76983753	ENSG00000266844.1|AC093330.1|lncRNA|chr18:76983726:76983753:+	0	+
#Deleted in new
chr18	76983726	76984082	ENSG00000266844.1|AC093330.1|lncRNA|chr18:76983726:76984082:+	0	+
#Deleted in new
chr18	76983726	76984162	ENSG00000266844.1|AC093330.1|lncRNA|chr18:76983726:76984162:+	0	+
#Deleted in new
chr18	76985203	76985210	ENSG00000197971.14|MBP|pc|chr18:76985203:76985210:-	0	-
#Deleted in new
chr18	76985203	76985487	ENSG00000197971.14|MBP|pc|chr18:76985203:76985487:-	0	-
#Deleted in new
chr18	76985249	76985431	ENSG00000197971.14|MBP|pc|chr18:76985249:76985431:-	0	-
#Deleted in new
chr18	76990826	76990914	ENSG00000197971.14|MBP|pc|chr18:76990826:76990914:-	0	-
#Partially deleted in new
chr18	77002848	77006846	ENSG00000279811.1|AC093330.2|lncRNA|chr18:77002848:77006846:-	0	-
#Deleted in new
chr18	77005883	77006242	ENSG00000197971.14|MBP|pc|chr18:77005883:77006242:-	0	-
#Deleted in new
chr18	77087345	77087582	ENSG00000197971.14|MBP|pc|chr18:77087345:77087582:-	0	-
#Deleted in new
chr18	77087345	77087609	ENSG00000197971.14|MBP|pc|chr18:77087345:77087609:-	0	-
#Deleted in new
chr18	77087345	77087651	ENSG00000197971.14|MBP|pc|chr18:77087345:77087651:-	0	-
#Partially deleted in new
chr18	77093085	77093446	ENSG00000275178.1|AC018529.1|lncRNA|chr18:77093085:77093446:+	0	+
#Deleted in new
chr18	77097250	77097474	ENSG00000197971.14|MBP|pc|chr18:77097250:77097474:-	0	-
#Deleted in new
chr18	77112601	77112794	ENSG00000278330.1|AC018529.2|lncRNA|chr18:77112601:77112794:+	0	+
#Deleted in new
chr18	77127289	77127712	ENSG00000197971.14|MBP|pc|chr18:77127289:77127712:-	0	-
#Deleted in new
chr18	77127885	77127945	ENSG00000197971.14|MBP|pc|chr18:77127885:77127945:-	0	-
#Deleted in new
chr18	77180105	77180200	ENSG00000265844.1|AC100863.1|lncRNA|chr18:77180105:77180200:+	0	+
#Deleted in new
chr18	77185183	77185297	ENSG00000265844.1|AC100863.1|lncRNA|chr18:77185183:77185297:+	0	+
#Deleted in new
chr18	77234220	77234393	ENSG00000265844.1|AC100863.1|lncRNA|chr18:77234220:77234393:+	0	+
#Deleted in new
chr18	77235373	77235430	ENSG00000265844.1|AC100863.1|lncRNA|chr18:77235373:77235430:+	0	+
#Deleted in new
chr18	77253739	77253994	ENSG00000166573.5|GALR1|pc|chr18:77253739:77253994:+	0	+
#Deleted in new
chr18	77421618	77422024	ENSG00000264015.1|AC124254.1|lncRNA|chr18:77421618:77422024:+	0	+
#Deleted in new
chr18	7747532	7747658	ENSG00000266767.1|AP000897.2|lncRNA|chr18:7747532:7747658:-	0	-
#Deleted in new
chr18	775057	775112	ENSG00000176105.13|YES1|pc|chr18:775057:775112:-	0	-
#Deleted in new
chr18	7751019	7751505	ENSG00000266767.1|AP000897.2|lncRNA|chr18:7751019:7751505:-	0	-
#Deleted in new
chr18	775188	775266	ENSG00000176105.13|YES1|pc|chr18:775188:775266:-	0	-
#Deleted in new
chr18	7754763	7754831	ENSG00000266767.1|AP000897.2|lncRNA|chr18:7754763:7754831:-	0	-
#Deleted in new
chr18	7754972	7755284	ENSG00000173482.16|PTPRM|pc|chr18:7754972:7755284:+	0	+
#Deleted in new
chr18	77560698	77560763	ENSG00000264015.1|AC124254.1|lncRNA|chr18:77560698:77560763:+	0	+
#Partially deleted in new
chr18	77622551	77623093	ENSG00000264693.1|AC123786.1|lncRNA|chr18:77622551:77623093:+	0	+
#Deleted in new
chr18	77624396	77624515	ENSG00000264693.1|AC123786.1|lncRNA|chr18:77624396:77624515:+	0	+
#Deleted in new
chr18	77971293	77972542	ENSG00000265843.2|LINC01029|lncRNA|chr18:77971293:77972542:-	0	-
#Deleted in new
chr18	77971503	77972513	ENSG00000265843.2|LINC01029|lncRNA|chr18:77971503:77972513:-	0	-
#Deleted in new
chr18	77971813	77972513	ENSG00000265843.2|LINC01029|lncRNA|chr18:77971813:77972513:-	0	-
#Deleted in new
chr18	77979494	77979629	ENSG00000265843.2|LINC01029|lncRNA|chr18:77979494:77979629:-	0	-
#Deleted in new
chr18	77982519	77982839	ENSG00000265843.2|LINC01029|lncRNA|chr18:77982519:77982839:-	0	-
#Deleted in new
chr18	77983019	77983753	ENSG00000264334.1|AC134978.1|lncRNA|chr18:77983019:77983753:-	0	-
#Deleted in new
chr18	77993634	77993698	ENSG00000265843.2|LINC01029|lncRNA|chr18:77993634:77993698:-	0	-
#Deleted in new
chr18	77993634	77993722	ENSG00000265843.2|LINC01029|lncRNA|chr18:77993634:77993722:-	0	-
#Deleted in new
chr18	78137222	78137336	ENSG00000266213.1|AC107892.1|lncRNA|chr18:78137222:78137336:+	0	+
#Partially deleted in new
chr18	7814117	7815730	ENSG00000264596.1|AP000897.1|lncRNA|chr18:7814117:7815730:+	0	+
#Deleted in new
chr18	78480548	78480720	ENSG00000265644.1|AC087399.1|lncRNA|chr18:78480548:78480720:+	0	+
#Deleted in new
chr18	78484677	78484867	ENSG00000265644.1|AC087399.1|lncRNA|chr18:78484677:78484867:+	0	+
#Deleted in new
chr18	787902	787986	ENSG00000176105.13|YES1|pc|chr18:787902:787986:-	0	-
#Deleted in new
chr18	78908628	78908750	ENSG00000266586.1|AC091027.2|lncRNA|chr18:78908628:78908750:-	0	-
#Deleted in new
chr18	78918936	78918993	ENSG00000266586.1|AC091027.2|lncRNA|chr18:78918936:78918993:-	0	-
#Deleted in new
chr18	78925063	78925228	ENSG00000265101.1|AC091027.1|lncRNA|chr18:78925063:78925228:-	0	-
#Deleted in new
chr18	78927083	78927441	ENSG00000265101.1|AC091027.1|lncRNA|chr18:78927083:78927441:-	0	-
#Partially deleted in new
chr1	87903898	87904077	ENSG00000224235.1|LINC01773|lncRNA|chr1:87903898:87904077:-	0	-
#Deleted in new
chr18	79077981	79078157	ENSG00000166377.19|ATP9B|pc|chr18:79077981:79078157:+	0	+
#Partially deleted in new
chr18	79085133	79086435	ENSG00000279416.1|AC099689.1|lncRNA|chr18:79085133:79086435:+	0	+
#Deleted in new
chr18	79114993	79116082	ENSG00000166377.19|ATP9B|pc|chr18:79114993:79116082:+	0	+
#Deleted in new
chr18	79173701	79173733	ENSG00000166377.19|ATP9B|pc|chr18:79173701:79173733:+	0	+
#Partially deleted in new
chr18	79209547	79209722	ENSG00000166377.19|ATP9B|pc|chr18:79209547:79209722:+	0	+
#Deleted in new
chr18	79299898	79299991	ENSG00000166377.19|ATP9B|pc|chr18:79299898:79299991:+	0	+
#Deleted in new
chr18	79332827	79332998	ENSG00000166377.19|ATP9B|pc|chr18:79332827:79332998:+	0	+
#Deleted in new
chr18	79332853	79333000	ENSG00000166377.19|ATP9B|pc|chr18:79332853:79333000:+	0	+
#Deleted in new
chr18	79352457	79354567	ENSG00000279077.1|AC023090.2|lncRNA|chr18:79352457:79354567:+	0	+
#Deleted in new
chr18	79361738	79361992	ENSG00000166377.19|ATP9B|pc|chr18:79361738:79361992:+	0	+
#Partially deleted in new
chr18	79377246	79378142	ENSG00000166377.19|ATP9B|pc|chr18:79377246:79378142:+	0	+
#Partially deleted in new
chr18	79377246	79378266	ENSG00000166377.19|ATP9B|pc|chr18:79377246:79378266:+	0	+
#Partially deleted in new
chr18	79377246	79378283	ENSG00000166377.19|ATP9B|pc|chr18:79377246:79378283:+	0	+
#Deleted in new
chr18	79377889	79378141	ENSG00000166377.19|ATP9B|pc|chr18:79377889:79378141:+	0	+
#Partially deleted in new
chr18	79420835	79422780	ENSG00000279637.1|AC018445.3|lncRNA|chr18:79420835:79422780:+	0	+
#Deleted in new
chr18	79448269	79448401	ENSG00000131196.17|NFATC1|pc|chr18:79448269:79448401:+	0	+
#Deleted in new
chr18	79470119	79470206	ENSG00000275186.1|AC018445.1|lncRNA|chr18:79470119:79470206:-	0	-
#Deleted in new
chr18	79470459	79470940	ENSG00000275186.1|AC018445.1|lncRNA|chr18:79470459:79470940:-	0	-
#Deleted in new
chr18	79496057	79498348	ENSG00000279981.1|AC018445.4|lncRNA|chr18:79496057:79498348:+	0	+
#Partially deleted in new
chr18	79527118	79527402	ENSG00000131196.17|NFATC1|pc|chr18:79527118:79527402:+	0	+
#Partially deleted in new
chr18	79576459	79579808	ENSG00000267287.1|AC068473.3|lncRNA|chr18:79576459:79579808:+	0	+
#Deleted in new
chr18	79578062	79579420	ENSG00000267287.1|AC068473.3|lncRNA|chr18:79578062:79579420:+	0	+
#Deleted in new
chr18	79585070	79585290	ENSG00000267287.1|AC068473.3|lncRNA|chr18:79585070:79585290:+	0	+
#Deleted in new
chr18	79610746	79611198	ENSG00000267409.1|AC068473.4|lncRNA|chr18:79610746:79611198:+	0	+
#Deleted in new
chr18	79612170	79612303	ENSG00000267409.1|AC068473.4|lncRNA|chr18:79612170:79612303:+	0	+
#Deleted in new
chr18	79638927	79639119	ENSG00000178412.4|AC068473.1|lncRNA|chr18:79638927:79639119:-	0	-
#Deleted in new
chr18	79641167	79641299	ENSG00000178412.4|AC068473.1|lncRNA|chr18:79641167:79641299:-	0	-
#Deleted in new
chr18	79660638	79660804	ENSG00000178412.4|AC068473.1|lncRNA|chr18:79660638:79660804:-	0	-
#Partially deleted in new
chr18	79677286	79679358	ENSG00000274828.1|AC068473.5|lncRNA|chr18:79677286:79679358:-	0	-
#Deleted in new
chr18	79681429	79681517	ENSG00000060069.16|CTDP1|pc|chr18:79681429:79681517:+	0	+
#Deleted in new
chr18	79681435	79681517	ENSG00000060069.16|CTDP1|pc|chr18:79681435:79681517:+	0	+
#Deleted in new
chr18	79681458	79681517	ENSG00000060069.16|CTDP1|pc|chr18:79681458:79681517:+	0	+
#Deleted in new
chr18	79683042	79683149	ENSG00000060069.16|CTDP1|pc|chr18:79683042:79683149:+	0	+
#Deleted in new
chr18	79685322	79685591	ENSG00000060069.16|CTDP1|pc|chr18:79685322:79685591:+	0	+
#Deleted in new
chr18	79702720	79703107	ENSG00000266901.1|AC068473.2|lncRNA|chr18:79702720:79703107:-	0	-
#Partially deleted in new
chr18	79735609	79736521	ENSG00000060069.16|CTDP1|pc|chr18:79735609:79736521:+	0	+
#Deleted in new
chr18	79749785	79749997	ENSG00000060069.16|CTDP1|pc|chr18:79749785:79749997:+	0	+
#Partially deleted in new
chr18	79753651	79756623	ENSG00000060069.16|CTDP1|pc|chr18:79753651:79756623:+	0	+
#Partially deleted in new
chr18	79787120	79787623	ENSG00000266924.1|AC021594.1|lncRNA|chr18:79787120:79787623:+	0	+
#Deleted in new
chr18	79791299	79791432	ENSG00000266924.1|AC021594.1|lncRNA|chr18:79791299:79791432:+	0	+
#Partially deleted in new
chr18	79816078	79816529	ENSG00000267780.2|AC021594.2|lncRNA|chr18:79816078:79816529:+	0	+
#Deleted in new
chr18	79875883	79876276	ENSG00000178342.4|KCNG2|pc|chr18:79875883:79876276:+	0	+
#Deleted in new
chr18	79900554	79900903	ENSG00000278075.1|AC114341.1|lncRNA|chr18:79900554:79900903:-	0	-
#Partially deleted in new
chr18	79915386	79915961	ENSG00000122490.18|PQLC1|pc|chr18:79915386:79915961:-	0	-
#Deleted in new
chr18	79924886	79925053	ENSG00000122490.18|PQLC1|pc|chr18:79924886:79925053:-	0	-
#Partially deleted in new
chr18	79943328	79944324	ENSG00000122490.18|PQLC1|pc|chr18:79943328:79944324:-	0	-
#Deleted in new
chr18	79943749	79943840	ENSG00000122490.18|PQLC1|pc|chr18:79943749:79943840:-	0	-
#Deleted in new
chr18	79944572	79944680	ENSG00000122490.18|PQLC1|pc|chr18:79944572:79944680:-	0	-
#Deleted in new
chr18	79945126	79945232	ENSG00000122490.18|PQLC1|pc|chr18:79945126:79945232:-	0	-
#Deleted in new
chr18	79949518	79949636	ENSG00000122490.18|PQLC1|pc|chr18:79949518:79949636:-	0	-
#Deleted in new
chr18	79949518	79949655	ENSG00000122490.18|PQLC1|pc|chr18:79949518:79949655:-	0	-
#Partially deleted in new
chr18	79970042	79970817	ENSG00000226742.3|HSBP1L1|pc|chr18:79970042:79970817:+	0	+
#Deleted in new
chr18	79970439	79970735	ENSG00000226742.3|HSBP1L1|pc|chr18:79970439:79970735:+	0	+
#Deleted in new
chr18	79970439	79970805	ENSG00000226742.3|HSBP1L1|pc|chr18:79970439:79970805:+	0	+
#Deleted in new
chr18	79970439	79970822	ENSG00000226742.3|HSBP1L1|pc|chr18:79970439:79970822:+	0	+
#Deleted in new
chr18	79976717	79976787	ENSG00000141759.14|TXNL4A|pc|chr18:79976717:79976787:-	0	-
#Deleted in new
chr18	79979332	79979640	ENSG00000141759.14|TXNL4A|pc|chr18:79979332:79979640:-	0	-
#Deleted in new
chr18	79986601	79986734	ENSG00000141759.14|TXNL4A|pc|chr18:79986601:79986734:-	0	-
#Deleted in new
chr18	79986601	79986750	ENSG00000141759.14|TXNL4A|pc|chr18:79986601:79986750:-	0	-
#Deleted in new
chr18	79994942	79995433	ENSG00000141759.14|TXNL4A|pc|chr18:79994942:79995433:-	0	-
#Deleted in new
chr18	80030520	80030577	ENSG00000141759.14|TXNL4A|pc|chr18:80030520:80030577:-	0	-
#Deleted in new
chr18	80033850	80033891	ENSG00000141759.14|TXNL4A|pc|chr18:80033850:80033891:-	0	-
#Deleted in new
chr18	80033850	80033894	ENSG00000141759.14|TXNL4A|pc|chr18:80033850:80033894:-	0	-
#Deleted in new
chr18	80033850	80033949	ENSG00000141759.14|TXNL4A|pc|chr18:80033850:80033949:-	0	-
#Partially deleted in new
chr18	80034460	80036047	ENSG00000101546.12|RBFA|pc|chr18:80034460:80036047:+	0	+
#Deleted in new
chr18	80036667	80036710	ENSG00000101546.12|RBFA|pc|chr18:80036667:80036710:+	0	+
#Partially deleted in new
chr18	80041301	80042219	ENSG00000101546.12|RBFA|pc|chr18:80041301:80042219:+	0	+
#Partially deleted in new
chr18	80046899	80047425	ENSG00000261126.7|RBFADN|lncRNA|chr18:80046899:80047425:+	0	+
#Deleted in new
chr18	80051283	80051545	ENSG00000267127.7|AC090360.1|pc|chr18:80051283:80051545:+	0	+
#Deleted in new
chr18	80062751	80067308	ENSG00000261126.7|RBFADN|lncRNA|chr18:80062751:80067308:+	0	+
#Deleted in new
chr18	80066910	80067045	ENSG00000261126.7|RBFADN|lncRNA|chr18:80066910:80067045:+	0	+
#Deleted in new
chr18	80067255	80067308	ENSG00000261126.7|RBFADN|lncRNA|chr18:80067255:80067308:+	0	+
#Deleted in new
chr18	80069797	80069906	ENSG00000261126.7|RBFADN|lncRNA|chr18:80069797:80069906:+	0	+
#Deleted in new
chr18	80069797	80069906	ENSG00000267127.7|AC090360.1|pc|chr18:80069797:80069906:+	0	+
#Deleted in new
chr18	80070237	80070758	ENSG00000261126.7|RBFADN|lncRNA|chr18:80070237:80070758:+	0	+
#Deleted in new
chr18	80079686	80079808	ENSG00000261126.7|RBFADN|lncRNA|chr18:80079686:80079808:+	0	+
#Deleted in new
chr18	80079686	80079808	ENSG00000267127.7|AC090360.1|pc|chr18:80079686:80079808:+	0	+
#Deleted in new
chr18	80079686	80080309	ENSG00000267127.7|AC090360.1|pc|chr18:80079686:80080309:+	0	+
#Deleted in new
chr18	80080780	80080937	ENSG00000267127.7|AC090360.1|pc|chr18:80080780:80080937:+	0	+
#Deleted in new
chr18	80080780	80081238	ENSG00000261126.7|RBFADN|lncRNA|chr18:80080780:80081238:+	0	+
#Deleted in new
chr18	80080780	80081293	ENSG00000261126.7|RBFADN|lncRNA|chr18:80080780:80081293:+	0	+
#Deleted in new
chr18	80082152	80082492	ENSG00000267127.7|AC090360.1|pc|chr18:80082152:80082492:+	0	+
#Deleted in new
chr18	80082351	80082492	ENSG00000267127.7|AC090360.1|pc|chr18:80082351:80082492:+	0	+
#Deleted in new
chr18	80095287	80095457	ENSG00000267127.7|AC090360.1|pc|chr18:80095287:80095457:+	0	+
#Deleted in new
chr18	80095287	80095482	ENSG00000261126.7|RBFADN|lncRNA|chr18:80095287:80095482:+	0	+
#Deleted in new
chr18	80095287	80095521	ENSG00000267127.7|AC090360.1|pc|chr18:80095287:80095521:+	0	+
#Deleted in new
chr18	80095287	80097088	ENSG00000267127.7|AC090360.1|pc|chr18:80095287:80097088:+	0	+
#Deleted in new
chr18	80133691	80133806	ENSG00000101544.8|ADNP2|pc|chr18:80133691:80133806:+	0	+
#Deleted in new
chr18	80147434	80147523	ENSG00000101544.8|ADNP2|pc|chr18:80147434:80147523:+	0	+
#Deleted in new
chr18	80147923	80148254	ENSG00000267270.5|PARD6G-AS1|lncRNA|chr18:80147923:80148254:+	0	+
#Deleted in new
chr18	80147924	80148254	ENSG00000267270.5|PARD6G-AS1|lncRNA|chr18:80147924:80148254:+	0	+
#Deleted in new
chr18	80148010	80148254	ENSG00000267270.5|PARD6G-AS1|lncRNA|chr18:80148010:80148254:+	0	+
#Deleted in new
chr18	80148048	80148254	ENSG00000267270.5|PARD6G-AS1|lncRNA|chr18:80148048:80148254:+	0	+
#Deleted in new
chr18	80148421	80149273	ENSG00000267270.5|PARD6G-AS1|lncRNA|chr18:80148421:80149273:+	0	+
#Partially deleted in new
chr18	80161751	80162413	ENSG00000278000.1|AC139100.2|lncRNA|chr18:80161751:80162413:+	0	+
#Deleted in new
chr18	80162515	80162603	ENSG00000267270.5|PARD6G-AS1|lncRNA|chr18:80162515:80162603:+	0	+
#Deleted in new
chr18	8017791	8018095	ENSG00000173482.16|PTPRM|pc|chr18:8017791:8018095:+	0	+
#Deleted in new
chr18	8017822	8018057	ENSG00000173482.16|PTPRM|pc|chr18:8017822:8018057:+	0	+
#Partially deleted in new
chr18	80183679	80184764	ENSG00000267251.2|AC139100.1|lncRNA|chr18:80183679:80184764:+	0	+
#Partially deleted in new
chr18	80183723	80184961	ENSG00000267251.2|AC139100.1|lncRNA|chr18:80183723:80184961:+	0	+
#Deleted in new
chr18	80187730	80187942	ENSG00000267251.2|AC139100.1|lncRNA|chr18:80187730:80187942:+	0	+
#Deleted in new
chr1	8805859	8805939	ENSG00000228423.2|AL357552.2|lncRNA|chr1:8805859:8805939:-	0	-
#Deleted in new
chr1	8806778	8807051	ENSG00000228423.2|AL357552.2|lncRNA|chr1:8806778:8807051:-	0	-
#Deleted in new
chr18	8270005	8270447	ENSG00000173482.16|PTPRM|pc|chr18:8270005:8270447:+	0	+
#Deleted in new
chr18	8399700	8399831	ENSG00000173482.16|PTPRM|pc|chr18:8399700:8399831:+	0	+
#Partially deleted in new
chr18	8402846	8405161	ENSG00000265413.1|AP001094.2|lncRNA|chr18:8402846:8405161:+	0	+
#Partially deleted in new
chr1	88570809	88570860	ENSG00000237505.6|PKN2-AS1|lncRNA|chr1:88570809:88570860:-	0	-
#Partially deleted in new
chr1	8871351	8871986	ENSG00000074800.13|ENO1|pc|chr1:8871351:8871986:-	0	-
#Deleted in new
chr18	8717370	8717426	ENSG00000168502.17|MTCL1|pc|chr18:8717370:8717426:+	0	+
#Deleted in new
chr18	8717375	8717426	ENSG00000168502.17|MTCL1|pc|chr18:8717375:8717426:+	0	+
#Deleted in new
chr1	8875787	8876031	ENSG00000236269.1|ENO1-IT1|lncRNA|chr1:8875787:8876031:-	0	-
#Partially deleted in new
chr1	8877507	8878007	ENSG00000236269.1|ENO1-IT1|lncRNA|chr1:8877507:8878007:-	0	-
#Partially deleted in new
chr18	8785935	8787303	ENSG00000168502.17|MTCL1|pc|chr18:8785935:8787303:+	0	+
#Deleted in new
chr18	8809447	8809561	ENSG00000168502.17|MTCL1|pc|chr18:8809447:8809561:+	0	+
#Deleted in new
chr18	8809447	8810002	ENSG00000168502.17|MTCL1|pc|chr18:8809447:8810002:+	0	+
#Deleted in new
chr18	8809817	8810198	ENSG00000168502.17|MTCL1|pc|chr18:8809817:8810198:+	0	+
#Deleted in new
chr18	8811130	8811256	ENSG00000168502.17|MTCL1|pc|chr18:8811130:8811256:+	0	+
#Partially deleted in new
chr1	88887691	88888048	ENSG00000137947.11|GTF2B|pc|chr1:88887691:88888048:-	0	-
#Partially deleted in new
chr1	88891606	88891944	ENSG00000137947.11|GTF2B|pc|chr1:88891606:88891944:-	0	-
#Deleted in new
chr1	88992584	88992748	ENSG00000137944.17|KYAT3|pc|chr1:88992584:88992748:-	0	-
#Deleted in new
chr1	88992584	88992759	ENSG00000213516.9|RBMXL1|pc|chr1:88992584:88992759:-	0	-
#Deleted in new
chr1	88992584	88992772	ENSG00000213516.9|RBMXL1|pc|chr1:88992584:88992772:-	0	-
#Deleted in new
chr1	88992584	88992776	ENSG00000137944.17|KYAT3|pc|chr1:88992584:88992776:-	0	-
#Deleted in new
chr1	88992584	88992921	ENSG00000137944.17|KYAT3|pc|chr1:88992584:88992921:-	0	-
#Deleted in new
chr1	88992584	88992960	ENSG00000213516.9|RBMXL1|pc|chr1:88992584:88992960:-	0	-
#Deleted in new
chr1	88992886	88992953	ENSG00000137944.17|KYAT3|pc|chr1:88992886:88992953:-	0	-
#Duplicated in new
chr1	89009391	89009494	ENSG00000117226.11|GBP3|pc|chr1:89009391:89009494:-	0	-
#Deleted in new
chr1	89020125	89020211	ENSG00000117226.11|GBP3|pc|chr1:89020125:89020211:-	0	-
#Deleted in new
chr1	89020129	89020211	ENSG00000117226.11|GBP3|pc|chr1:89020129:89020211:-	0	-
#Deleted in new
chr1	89022683	89022751	ENSG00000117226.11|GBP3|pc|chr1:89022683:89022751:-	0	-
#Deleted in new
chr1	89022683	89022778	ENSG00000117226.11|GBP3|pc|chr1:89022683:89022778:-	0	-
#Deleted in new
chr1	89022683	89022803	ENSG00000117226.11|GBP3|pc|chr1:89022683:89022803:-	0	-
#Deleted in new
chr1	89022683	89022838	ENSG00000117226.11|GBP3|pc|chr1:89022683:89022838:-	0	-
#Deleted in new
chr1	89022683	89022851	ENSG00000117226.11|GBP3|pc|chr1:89022683:89022851:-	0	-
#Deleted in new
chr1	89022683	89022860	ENSG00000117226.11|GBP3|pc|chr1:89022683:89022860:-	0	-
#Deleted in new
chr1	89022683	89022866	ENSG00000117226.11|GBP3|pc|chr1:89022683:89022866:-	0	-
#Deleted in new
chr1	89022683	89022882	ENSG00000117226.11|GBP3|pc|chr1:89022683:89022882:-	0	-
#Deleted in new
chr1	89022683	89022894	ENSG00000117226.11|GBP3|pc|chr1:89022683:89022894:-	0	-
#Duplicated in new
chr1	89055112	89055377	ENSG00000117228.9|GBP1|pc|chr1:89055112:89055377:-	0	-
#Duplicated in new
chr1	89055568	89056228	ENSG00000117228.9|GBP1|pc|chr1:89055568:89056228:-	0	-
#Deleted in new
chr1	89065159	89065230	ENSG00000117228.9|GBP1|pc|chr1:89065159:89065230:-	0	-
#Deleted in new
chr1	89065159	89065360	ENSG00000117228.9|GBP1|pc|chr1:89065159:89065360:-	0	-
#Deleted in new
chr18	9104081	9104225	ENSG00000178127.12|NDUFV2|pc|chr18:9104081:9104225:+	0	+
#Deleted in new
chr18	9104943	9104979	ENSG00000178127.12|NDUFV2|pc|chr18:9104943:9104979:+	0	+
#Partially deleted in new
chr1	89106131	89107052	ENSG00000162645.12|GBP2|pc|chr1:89106131:89107052:-	0	-
#Deleted in new
chr18	9112403	9112738	ENSG00000263847.1|AP005899.1|lncRNA|chr18:9112403:9112738:-	0	-
#Deleted in new
chr18	9121264	9121456	ENSG00000266053.2|NDUFV2-AS1|lncRNA|chr18:9121264:9121456:-	0	-
#Deleted in new
chr18	9121276	9121456	ENSG00000266053.2|NDUFV2-AS1|lncRNA|chr18:9121276:9121456:-	0	-
#Deleted in new
chr18	9126626	9126703	ENSG00000178127.12|NDUFV2|pc|chr18:9126626:9126703:+	0	+
#Deleted in new
chr18	9132222	9132398	ENSG00000266053.2|NDUFV2-AS1|lncRNA|chr18:9132222:9132398:-	0	-
#Deleted in new
chr18	9132222	9132409	ENSG00000266053.2|NDUFV2-AS1|lncRNA|chr18:9132222:9132409:-	0	-
#Deleted in new
chr18	9133390	9133422	ENSG00000266053.2|NDUFV2-AS1|lncRNA|chr18:9133390:9133422:-	0	-
#Deleted in new
chr18	9133390	9133510	ENSG00000266053.2|NDUFV2-AS1|lncRNA|chr18:9133390:9133510:-	0	-
#Deleted in new
chr18	9135712	9136491	ENSG00000266053.2|NDUFV2-AS1|lncRNA|chr18:9135712:9136491:-	0	-
#Deleted in new
chr18	9136227	9136355	ENSG00000101745.16|ANKRD12|pc|chr18:9136227:9136355:+	0	+
#Partially deleted in new
chr18	9136363	9136645	ENSG00000266053.2|NDUFV2-AS1|lncRNA|chr18:9136363:9136645:-	0	-
#Deleted in new
chr1	89175920	89176040	ENSG00000213512.1|GBP7|pc|chr1:89175920:89176040:-	0	-
#Split in new
chr1	89181147	89185469	ENSG00000162654.8|GBP4|pc|chr1:89181147:89185469:-	0	-
#Deleted in new
chr1	89181772	89182378	ENSG00000162654.8|GBP4|pc|chr1:89181772:89182378:-	0	-
#Deleted in new
chr1	89182497	89182527	ENSG00000162654.8|GBP4|pc|chr1:89182497:89182527:-	0	-
#Deleted in new
chr1	89198713	89199058	ENSG00000284734.1|AC099063.4|lncRNA|chr1:89198713:89199058:+	0	+
#Deleted in new
chr1	89198794	89198932	ENSG00000162654.8|GBP4|pc|chr1:89198794:89198932:-	0	-
#Deleted in new
chr18	9200513	9200644	ENSG00000101745.16|ANKRD12|pc|chr18:9200513:9200644:+	0	+
#Deleted in new
chr1	89205783	89207040	ENSG00000284734.1|AC099063.4|lncRNA|chr1:89205783:89207040:+	0	+
#Partially deleted in new
chr1	89258949	89260817	ENSG00000154451.14|GBP5|pc|chr1:89258949:89260817:-	0	-
#Deleted in new
chr18	9259387	9260390	ENSG00000273284.1|AP001033.2|lncRNA|chr18:9259387:9260390:+	0	+
#Deleted in new
chr1	89294	91629	ENSG00000238009.6|AL627309.1|lncRNA|chr1:89294:91629:-	0	-
#Deleted in new
chr18	9315193	9315263	ENSG00000264964.1|AP001033.1|lncRNA|chr18:9315193:9315263:-	0	-
#Deleted in new
chr18	9322061	9322152	ENSG00000264964.1|AP001033.1|lncRNA|chr18:9322061:9322152:-	0	-
#Deleted in new
chr18	9334136	9334441	ENSG00000264964.1|AP001033.1|lncRNA|chr18:9334136:9334441:-	0	-
#Deleted in new
chr18	9334766	9334920	ENSG00000128791.11|TWSG1|pc|chr18:9334766:9334920:+	0	+
#Deleted in new
chr18	9334849	9334920	ENSG00000128791.11|TWSG1|pc|chr18:9334849:9334920:+	0	+
#Deleted in new
chr18	9388039	9388140	ENSG00000128791.11|TWSG1|pc|chr18:9388039:9388140:+	0	+
#Deleted in new
chr18	9388363	9388420	ENSG00000128791.11|TWSG1|pc|chr18:9388363:9388420:+	0	+
#Partially deleted in new
chr18	9476968	9477253	ENSG00000017797.12|RALBP1|pc|chr18:9476968:9477253:+	0	+
#Deleted in new
chr18	9479343	9479437	ENSG00000017797.12|RALBP1|pc|chr18:9479343:9479437:+	0	+
#Deleted in new
chr18	9506241	9509726	ENSG00000266805.1|AP005432.1|lncRNA|chr18:9506241:9509726:+	0	+
#Deleted in new
chr1	8951422	8952651	ENSG00000131686.14|CA6|pc|chr1:8951422:8952651:+	0	+
#Partially deleted in new
chr18	9550277	9551939	ENSG00000154845.15|PPP4R1|pc|chr18:9550277:9551939:-	0	-
#Deleted in new
chr1	89550	90050	ENSG00000239945.1|AL627309.3|lncRNA|chr1:89550:90050:-	0	-
#Deleted in new
chr1	89558710	89559036	ENSG00000197147.13|LRRC8B|pc|chr1:89558710:89559036:+	0	+
#Deleted in new
chr1	89572473	89572612	ENSG00000197147.13|LRRC8B|pc|chr1:89572473:89572612:+	0	+
#Deleted in new
chr18	9587385	9587532	ENSG00000266541.1|AP001381.1|lncRNA|chr18:9587385:9587532:+	0	+
#Deleted in new
chr1	89587902	89588085	ENSG00000231999.6|FLJ27354|lncRNA|chr1:89587902:89588085:-	0	-
#Deleted in new
chr18	9594178	9594234	ENSG00000154845.15|PPP4R1|pc|chr18:9594178:9594234:-	0	-
#Deleted in new
chr18	9599632	9599712	ENSG00000154845.15|PPP4R1|pc|chr18:9599632:9599712:-	0	-
#Deleted in new
chr18	9599632	9599741	ENSG00000154845.15|PPP4R1|pc|chr18:9599632:9599741:-	0	-
#Deleted in new
chr18	9617147	9617285	ENSG00000263627.1|PPP4R1-AS1|lncRNA|chr18:9617147:9617285:+	0	+
#Deleted in new
chr18	9619194	9619363	ENSG00000263627.1|PPP4R1-AS1|lncRNA|chr18:9619194:9619363:+	0	+
#Deleted in new
chr1	89624849	89625205	ENSG00000231999.6|FLJ27354|lncRNA|chr1:89624849:89625205:-	0	-
#Deleted in new
chr18	962591	962955	ENSG00000272461.1|AP005328.2|lncRNA|chr18:962591:962955:-	0	-
#Deleted in new
chr1	89706301	89706400	ENSG00000171488.14|LRRC8C|pc|chr1:89706301:89706400:+	0	+
#Deleted in new
chr1	89708527	89708648	ENSG00000171488.14|LRRC8C|pc|chr1:89708527:89708648:+	0	+
#Deleted in new
chr18	9722741	9722863	ENSG00000168461.12|RAB31|pc|chr18:9722741:9722863:+	0	+
#Deleted in new
chr18	9723557	9723713	ENSG00000168461.12|RAB31|pc|chr18:9723557:9723713:+	0	+
#Deleted in new
chr1	8974346	8974444	ENSG00000131686.14|CA6|pc|chr1:8974346:8974444:+	0	+
#Deleted in new
chr18	9757962	9758151	ENSG00000168461.12|RAB31|pc|chr18:9757962:9758151:+	0	+
#Deleted in new
chr1	89758856	89758940	ENSG00000171488.14|LRRC8C|pc|chr1:89758856:89758940:+	0	+
#Deleted in new
chr18	976588	976895	ENSG00000263551.5|AP005328.1|lncRNA|chr18:976588:976895:+	0	+
#Deleted in new
chr18	976589	976895	ENSG00000263551.5|AP005328.1|lncRNA|chr18:976589:976895:+	0	+
#Deleted in new
chr18	976696	976895	ENSG00000263551.5|AP005328.1|lncRNA|chr18:976696:976895:+	0	+
#Deleted in new
chr18	976743	976883	ENSG00000272461.1|AP005328.2|lncRNA|chr18:976743:976883:-	0	-
#Deleted in new
chr1	89768217	89769903	ENSG00000171488.14|LRRC8C|pc|chr1:89768217:89769903:+	0	+
#Deleted in new
chr1	89788913	89788982	ENSG00000231613.1|AC099568.1|lncRNA|chr1:89788913:89788982:+	0	+
#Deleted in new
chr18	9849595	9849656	ENSG00000168461.12|RAB31|pc|chr18:9849595:9849656:+	0	+
#Partially deleted in new
chr18	9912315	9912849	ENSG00000272799.1|AC006238.1|lncRNA|chr18:9912315:9912849:-	0	-
#Deleted in new
chr1	89929807	89929878	ENSG00000171492.14|LRRC8D|pc|chr1:89929807:89929878:+	0	+
#Partially deleted in new
chr18	9936726	9937066	ENSG00000101558.13|VAPA|pc|chr18:9936726:9937066:+	0	+
#Partially deleted in new
chr1	90027353	90035531	ENSG00000162664.16|ZNF326|pc|chr1:90027353:90035531:+	0	+
#Deleted in new
chr1	90286	91105	ENSG00000239945.1|AL627309.3|lncRNA|chr1:90286:91105:-	0	-
#Deleted in new
chr1	904833	904957	ENSG00000272438.1|AL645608.7|lncRNA|chr1:904833:904957:+	0	+
#Deleted in new
chr1	90513981	90514009	ENSG00000229201.1|AC092783.1|lncRNA|chr1:90513981:90514009:-	0	-
#Deleted in new
chr1	9071672	9071727	ENSG00000142583.17|SLC2A5|pc|chr1:9071672:9071727:-	0	-
#Deleted in new
chr1	9072303	9072385	ENSG00000142583.17|SLC2A5|pc|chr1:9072303:9072385:-	0	-
#Deleted in new
chr1	9073075	9073122	ENSG00000142583.17|SLC2A5|pc|chr1:9073075:9073122:-	0	-
#Deleted in new
chr1	90782982	90783423	ENSG00000233593.8|AL590094.1|lncRNA|chr1:90782982:90783423:-	0	-
#Deleted in new
chr1	90782983	90783423	ENSG00000233593.8|AL590094.1|lncRNA|chr1:90782983:90783423:-	0	-
#Deleted in new
chr1	90782985	90783423	ENSG00000233593.8|AL590094.1|lncRNA|chr1:90782985:90783423:-	0	-
#Deleted in new
chr1	90789397	90789487	ENSG00000233593.8|AL590094.1|lncRNA|chr1:90789397:90789487:-	0	-
#Deleted in new
chr1	90835825	90836161	ENSG00000233593.8|AL590094.1|lncRNA|chr1:90835825:90836161:-	0	-
#Deleted in new
chr1	9085013	9085126	ENSG00000142583.17|SLC2A5|pc|chr1:9085013:9085126:-	0	-
#Deleted in new
chr1	9085013	9085142	ENSG00000142583.17|SLC2A5|pc|chr1:9085013:9085142:-	0	-
#Deleted in new
chr1	9085013	9085166	ENSG00000142583.17|SLC2A5|pc|chr1:9085013:9085166:-	0	-
#Deleted in new
chr1	90860549	90861364	ENSG00000272094.1|AC091614.1|lncRNA|chr1:90860549:90861364:-	0	-
#Deleted in new
chr1	90862856	90862920	ENSG00000272094.1|AC091614.1|lncRNA|chr1:90862856:90862920:-	0	-
#Deleted in new
chr1	9088371	9088443	ENSG00000142583.17|SLC2A5|pc|chr1:9088371:9088443:-	0	-
#Deleted in new
chr1	9088371	9088457	ENSG00000142583.17|SLC2A5|pc|chr1:9088371:9088457:-	0	-
#Deleted in new
chr1	9088371	9088478	ENSG00000142583.17|SLC2A5|pc|chr1:9088371:9088478:-	0	-
#Deleted in new
chr1	90972743	90973213	ENSG00000122482.20|ZNF644|pc|chr1:90972743:90973213:-	0	-
#Deleted in new
chr1	90973152	90973213	ENSG00000122482.20|ZNF644|pc|chr1:90973152:90973213:-	0	-
#Deleted in new
chr19	1002021	1002161	ENSG00000266990.1|AC004528.1|lncRNA|chr19:1002021:1002161:-	0	-
#Deleted in new
chr19	1002628	1002757	ENSG00000266990.1|AC004528.1|lncRNA|chr19:1002628:1002757:-	0	-
#Partially deleted in new
chr19	10087250	10088260	ENSG00000130813.17|C19orf66|pc|chr19:10087250:10088260:+	0	+
#Deleted in new
chr19	10089110	10089208	ENSG00000130813.17|C19orf66|pc|chr19:10089110:10089208:+	0	+
#Deleted in new
chr19	10089110	10089378	ENSG00000130813.17|C19orf66|pc|chr19:10089110:10089378:+	0	+
#Deleted in new
chr19	10089306	10089378	ENSG00000130813.17|C19orf66|pc|chr19:10089306:10089378:+	0	+
#Partially deleted in new
chr19	10089306	10089695	ENSG00000130813.17|C19orf66|pc|chr19:10089306:10089695:+	0	+
#Partially deleted in new
chr19	10089446	10089695	ENSG00000130813.17|C19orf66|pc|chr19:10089446:10089695:+	0	+
#Deleted in new
chr19	10111537	10111740	ENSG00000244165.1|P2RY11|pc|chr19:10111537:10111740:+	0	+
#Deleted in new
chr19	10112103	10112455	ENSG00000244165.1|P2RY11|pc|chr19:10112103:10112455:+	0	+
#Deleted in new
chr19	10118075	10118557	ENSG00000130811.11|EIF3G|pc|chr19:10118075:10118557:-	0	-
#Deleted in new
chr19	10118369	10118557	ENSG00000130811.11|EIF3G|pc|chr19:10118369:10118557:-	0	-
#Deleted in new
chr19	10118439	10118557	ENSG00000130811.11|EIF3G|pc|chr19:10118439:10118557:-	0	-
#Deleted in new
chr19	10135438	10135517	ENSG00000130816.14|DNMT1|pc|chr19:10135438:10135517:-	0	-
#Partially deleted in new
chr19	10135438	10135852	ENSG00000130816.14|DNMT1|pc|chr19:10135438:10135852:-	0	-
#Deleted in new
chr19	10142818	10142896	ENSG00000130816.14|DNMT1|pc|chr19:10142818:10142896:-	0	-
#Partially deleted in new
chr19	10143765	10144754	ENSG00000130816.14|DNMT1|pc|chr19:10143765:10144754:-	0	-
#Deleted in new
chr19	1017278	1017420	ENSG00000182087.12|TMEM259|pc|chr19:1017278:1017420:-	0	-
#Deleted in new
chr19	10173089	10173174	ENSG00000130816.14|DNMT1|pc|chr19:10173089:10173174:-	0	-
#Deleted in new
chr19	10179880	10179982	ENSG00000130816.14|DNMT1|pc|chr19:10179880:10179982:-	0	-
#Partially deleted in new
chr19	10184322	10184559	ENSG00000130816.14|DNMT1|pc|chr19:10184322:10184559:-	0	-
#Deleted in new
chr19	10218751	10218869	ENSG00000130816.14|DNMT1|pc|chr19:10218751:10218869:-	0	-
#Deleted in new
chr19	10251900	10252009	ENSG00000105364.13|MRPL4|pc|chr19:10251900:10252009:+	0	+
#Deleted in new
chr19	10251943	10252009	ENSG00000105364.13|MRPL4|pc|chr19:10251943:10252009:+	0	+
#Deleted in new
chr19	10251963	10252009	ENSG00000105364.13|MRPL4|pc|chr19:10251963:10252009:+	0	+
#Partially deleted in new
chr19	10254588	10255717	ENSG00000105364.13|MRPL4|pc|chr19:10254588:10255717:+	0	+
#Deleted in new
chr19	10260211	10260428	ENSG00000266978.1|AC011511.2|lncRNA|chr19:10260211:10260428:-	0	-
#Deleted in new
chr19	10282257	10282342	ENSG00000090339.8|ICAM1|pc|chr19:10282257:10282342:+	0	+
#Partially deleted in new
chr19	10316017	10316097	ENSG00000267303.1|AC011511.4|pc|chr19:10316017:10316097:-	0	-
#Duplicated in new
chr19	10335145	10335976	ENSG00000076662.9|ICAM3|pc|chr19:10335145:10335976:-	0	-
#Duplicated in new
chr19	10335670	10335773	ENSG00000076662.9|ICAM3|pc|chr19:10335670:10335773:-	0	-
#Partially deleted in new
chr19	10339017	10339245	ENSG00000076662.9|ICAM3|pc|chr19:10339017:10339245:-	0	-
#Deleted in new
chr19	10339061	10339245	ENSG00000076662.9|ICAM3|pc|chr19:10339061:10339245:-	0	-
#Deleted in new
chr19	10339538	10339619	ENSG00000076662.9|ICAM3|pc|chr19:10339538:10339619:-	0	-
#Deleted in new
chr19	10339538	10339624	ENSG00000076662.9|ICAM3|pc|chr19:10339538:10339624:-	0	-
#Deleted in new
chr19	10339538	10339629	ENSG00000076662.9|ICAM3|pc|chr19:10339538:10339629:-	0	-
#Deleted in new
chr19	10339538	10339635	ENSG00000076662.9|ICAM3|pc|chr19:10339538:10339635:-	0	-
#Deleted in new
chr19	10339538	10339641	ENSG00000076662.9|ICAM3|pc|chr19:10339538:10339641:-	0	-
#Deleted in new
chr19	10339538	10339661	ENSG00000076662.9|ICAM3|pc|chr19:10339538:10339661:-	0	-
#Deleted in new
chr19	10339538	10339823	ENSG00000076662.9|ICAM3|pc|chr19:10339538:10339823:-	0	-
#Deleted in new
chr19	10351420	10351484	ENSG00000105397.13|TYK2|pc|chr19:10351420:10351484:-	0	-
#Partially deleted in new
chr19	10360961	10361073	ENSG00000105397.13|TYK2|pc|chr19:10360961:10361073:-	0	-
#Partially deleted in new
chr19	1036878	1037000	ENSG00000064666.14|CNN2|pc|chr19:1036878:1037000:+	0	+
#Deleted in new
chr19	10369756	10369877	ENSG00000105397.13|TYK2|pc|chr19:10369756:10369877:-	0	-
#Deleted in new
chr19	10379614	10379689	ENSG00000105397.13|TYK2|pc|chr19:10379614:10379689:-	0	-
#Deleted in new
chr19	10379614	10379779	ENSG00000105397.13|TYK2|pc|chr19:10379614:10379779:-	0	-
#Deleted in new
chr19	1038726	1039064	ENSG00000279753.1|AC011558.1|lncRNA|chr19:1038726:1039064:-	0	-
#Deleted in new
chr19	10400574	10400693	ENSG00000105401.8|CDC37|pc|chr19:10400574:10400693:-	0	-
#Partially deleted in new
chr19	1042314	1042465	ENSG00000064687.12|ABCA7|pc|chr19:1042314:1042465:+	0	+
#Deleted in new
chr19	1045531	1045619	ENSG00000064687.12|ABCA7|pc|chr19:1045531:1045619:+	0	+
#Deleted in new
chr19	10490338	10490396	ENSG00000267197.1|AC011461.1|lncRNA|chr19:10490338:10490396:-	0	-
#Deleted in new
chr19	10490701	10491000	ENSG00000267197.1|AC011461.1|lncRNA|chr19:10490701:10491000:-	0	-
#Partially deleted in new
chr19	10502387	10502687	ENSG00000079999.13|KEAP1|pc|chr19:10502387:10502687:-	0	-
#Partially deleted in new
chr19	10502408	10502685	ENSG00000079999.13|KEAP1|pc|chr19:10502408:10502685:-	0	-
#Deleted in new
chr19	10584969	10585044	ENSG00000129354.11|AP1M2|pc|chr19:10584969:10585044:-	0	-
#Partially deleted in new
chr19	1059022	1059263	ENSG00000064687.12|ABCA7|pc|chr19:1059022:1059263:+	0	+
#Deleted in new
chr19	10651861	10653844	ENSG00000267100.1|ILF3-AS1|lncRNA|chr19:10651861:10653844:-	0	-
#Partially deleted in new
chr19	10655023	10655123	ENSG00000129351.17|ILF3|pc|chr19:10655023:10655123:+	0	+
#Deleted in new
chr19	10655495	10655585	ENSG00000129351.17|ILF3|pc|chr19:10655495:10655585:+	0	+
#Deleted in new
chr19	1066508	1066641	ENSG00000180448.10|ARHGAP45|pc|chr19:1066508:1066641:+	0	+
#Deleted in new
chr19	10666491	10666649	ENSG00000129351.17|ILF3|pc|chr19:10666491:10666649:+	0	+
#Split in new
chr19	10689178	10692398	ENSG00000129351.17|ILF3|pc|chr19:10689178:10692398:+	0	+
#Split in new
chr19	10689178	10692417	ENSG00000129351.17|ILF3|pc|chr19:10689178:10692417:+	0	+
#Deleted in new
chr19	10708950	10709138	ENSG00000213339.8|QTRT1|pc|chr19:10708950:10709138:+	0	+
#Deleted in new
chr19	10709280	10709364	ENSG00000213339.8|QTRT1|pc|chr19:10709280:10709364:+	0	+
#Partially deleted in new
chr19	10711039	10712628	ENSG00000213339.8|QTRT1|pc|chr19:10711039:10712628:+	0	+
#Partially deleted in new
chr19	10713368	10713437	ENSG00000213339.8|QTRT1|pc|chr19:10713368:10713437:+	0	+
#Deleted in new
chr19	10755120	10755488	ENSG00000079805.16|DNM2|pc|chr19:10755120:10755488:+	0	+
#Deleted in new
chr19	10763098	10763616	ENSG00000079805.16|DNM2|pc|chr19:10763098:10763616:+	0	+
#Deleted in new
chr19	10768552	10768862	ENSG00000079805.16|DNM2|pc|chr19:10768552:10768862:+	0	+
#Deleted in new
chr19	10781373	10781567	ENSG00000079805.16|DNM2|pc|chr19:10781373:10781567:+	0	+
#Deleted in new
chr19	10781373	10781795	ENSG00000079805.16|DNM2|pc|chr19:10781373:10781795:+	0	+
#Partially deleted in new
chr19	10823787	10824806	ENSG00000079805.16|DNM2|pc|chr19:10823787:10824806:+	0	+
#Deleted in new
chr19	10835602	10835632	ENSG00000099203.6|TMED1|pc|chr19:10835602:10835632:-	0	-
#Deleted in new
chr19	10836574	10836770	ENSG00000214212.8|C19orf38|pc|chr19:10836574:10836770:+	0	+
#Deleted in new
chr19	1086578	1086988	ENSG00000099817.11|POLR2E|pc|chr19:1086578:1086988:-	0	-
#Deleted in new
chr19	1086578	1088720	ENSG00000099817.11|POLR2E|pc|chr19:1086578:1088720:-	0	-
#Deleted in new
chr19	1086594	1086988	ENSG00000099817.11|POLR2E|pc|chr19:1086594:1086988:-	0	-
#Deleted in new
chr19	1087644	1088681	ENSG00000099817.11|POLR2E|pc|chr19:1087644:1088681:-	0	-
#Deleted in new
chr19	1088065	1088166	ENSG00000099817.11|POLR2E|pc|chr19:1088065:1088166:-	0	-
#Deleted in new
chr19	1088147	1088720	ENSG00000099817.11|POLR2E|pc|chr19:1088147:1088720:-	0	-
#Deleted in new
chr19	1088162	1088720	ENSG00000099817.11|POLR2E|pc|chr19:1088162:1088720:-	0	-
#Deleted in new
chr19	1088166	1088720	ENSG00000099817.11|POLR2E|pc|chr19:1088166:1088720:-	0	-
#Deleted in new
chr19	1088387	1088720	ENSG00000099817.11|POLR2E|pc|chr19:1088387:1088720:-	0	-
#Deleted in new
chr19	1088423	1088720	ENSG00000099817.11|POLR2E|pc|chr19:1088423:1088720:-	0	-
#Deleted in new
chr19	1088608	1088720	ENSG00000099817.11|POLR2E|pc|chr19:1088608:1088720:-	0	-
#Deleted in new
chr19	1088644	1088713	ENSG00000099817.11|POLR2E|pc|chr19:1088644:1088713:-	0	-
#Partially deleted in new
chr19	1091500	1091907	ENSG00000099817.11|POLR2E|pc|chr19:1091500:1091907:-	0	-
#Partially deleted in new
chr19	10918985	10919680	ENSG00000142453.11|CARM1|pc|chr19:10918985:10919680:+	0	+
#Deleted in new
chr19	1092312	1092346	ENSG00000099817.11|POLR2E|pc|chr19:1092312:1092346:-	0	-
#Split in new
chr19	10929620	10930324	ENSG00000142444.6|TIMM29|pc|chr19:10929620:10930324:+	0	+
#Partially deleted in new
chr19	1093755	1093903	ENSG00000099817.11|POLR2E|pc|chr19:1093755:1093903:-	0	-
#Deleted in new
chr19	10965306	10965309	ENSG00000127616.17|SMARCA4|pc|chr19:10965306:10965309:+	0	+
#Deleted in new
chr19	10977652	10977815	ENSG00000127616.17|SMARCA4|pc|chr19:10977652:10977815:+	0	+
#Deleted in new
chr19	10980776	10980852	ENSG00000127616.17|SMARCA4|pc|chr19:10980776:10980852:+	0	+
#Deleted in new
chr19	10983479	10983711	ENSG00000127616.17|SMARCA4|pc|chr19:10983479:10983711:+	0	+
#Deleted in new
chr19	11010916	11011254	ENSG00000266936.1|AC011442.1|lncRNA|chr19:11010916:11011254:-	0	-
#Deleted in new
chr19	11015983	11016011	ENSG00000266936.1|AC011442.1|lncRNA|chr19:11015983:11016011:-	0	-
#Deleted in new
chr19	11018311	11018331	ENSG00000127616.17|SMARCA4|pc|chr19:11018311:11018331:+	0	+
#Partially deleted in new
chr19	11020580	11021967	ENSG00000127616.17|SMARCA4|pc|chr19:11020580:11021967:+	0	+
#Partially deleted in new
chr19	11030729	11032666	ENSG00000127616.17|SMARCA4|pc|chr19:11030729:11032666:+	0	+
#Deleted in new
chr19	11039457	11039553	ENSG00000127616.17|SMARCA4|pc|chr19:11039457:11039553:+	0	+
#Deleted in new
chr19	11060460	11060502	ENSG00000127616.17|SMARCA4|pc|chr19:11060460:11060502:+	0	+
#Deleted in new
chr19	11065192	11065395	ENSG00000127616.17|SMARCA4|pc|chr19:11065192:11065395:+	0	+
#Deleted in new
chr19	11090598	11090919	ENSG00000130164.13|LDLR|pc|chr19:11090598:11090919:+	0	+
#Partially deleted in new
chr19	11102663	11104268	ENSG00000130164.13|LDLR|pc|chr19:11102663:11104268:+	0	+
#Deleted in new
chr19	11127546	11127654	ENSG00000130164.13|LDLR|pc|chr19:11127546:11127654:+	0	+
#Deleted in new
chr19	11137311	11137415	ENSG00000161888.11|SPC24|pc|chr19:11137311:11137415:-	0	-
#Partially deleted in new
chr19	11145493	11147289	ENSG00000161888.11|SPC24|pc|chr19:11145493:11147289:-	0	-
#Deleted in new
chr19	11145922	11146279	ENSG00000161888.11|SPC24|pc|chr19:11145922:11146279:-	0	-
#Deleted in new
chr19	11146021	11146430	ENSG00000161888.11|SPC24|pc|chr19:11146021:11146430:-	0	-
#Partially deleted in new
chr19	1115355	1116103	ENSG00000064932.15|SBNO2|pc|chr19:1115355:1116103:-	0	-
#Deleted in new
chr19	11170337	11170415	ENSG00000197256.10|KANK2|pc|chr19:11170337:11170415:-	0	-
#Duplicated in new
chr19	11195621	11195820	ENSG00000197256.10|KANK2|pc|chr19:11195621:11195820:-	0	-
#Duplicated in new
chr19	11195622	11195881	ENSG00000197256.10|KANK2|pc|chr19:11195622:11195881:-	0	-
#Deleted in new
chr19	11205809	11206108	ENSG00000267082.1|AC011472.1|lncRNA|chr19:11205809:11206108:+	0	+
#Deleted in new
chr19	11206180	11206387	ENSG00000130158.13|DOCK6|pc|chr19:11206180:11206387:-	0	-
#Deleted in new
chr19	11216136	11216168	ENSG00000267082.1|AC011472.1|lncRNA|chr19:11216136:11216168:+	0	+
#Deleted in new
chr19	11221082	11221573	ENSG00000273733.1|AC011472.4|lncRNA|chr19:11221082:11221573:+	0	+
#Partially deleted in new
chr19	11247257	11248151	ENSG00000130158.13|DOCK6|pc|chr19:11247257:11248151:-	0	-
#Deleted in new
chr19	11298871	11298946	ENSG00000130167.13|TSPAN16|pc|chr19:11298871:11298946:+	0	+
#Partially deleted in new
chr19	11300776	11301236	ENSG00000267174.5|AC011472.2|lncRNA|chr19:11300776:11301236:-	0	-
#Deleted in new
chr19	11300866	11301236	ENSG00000267174.5|AC011472.2|lncRNA|chr19:11300866:11301236:-	0	-
#Deleted in new
chr19	11301200	11301308	ENSG00000130167.13|TSPAN16|pc|chr19:11301200:11301308:+	0	+
#Deleted in new
chr19	11307861	11308061	ENSG00000130167.13|TSPAN16|pc|chr19:11307861:11308061:+	0	+
#Deleted in new
chr19	11321293	11321323	ENSG00000267174.5|AC011472.2|lncRNA|chr19:11321293:11321323:-	0	-
#Partially deleted in new
chr19	11322155	11322982	ENSG00000267576.1|AC011472.3|lncRNA|chr19:11322155:11322982:+	0	+
#Deleted in new
chr19	11326793	11326996	ENSG00000130167.13|TSPAN16|pc|chr19:11326793:11326996:+	0	+
#Deleted in new
chr19	11368122	11368295	ENSG00000267277.1|AC024575.1|lncRNA|chr19:11368122:11368295:-	0	-
#Deleted in new
chr19	11371687	11371871	ENSG00000267277.1|AC024575.1|lncRNA|chr19:11371687:11371871:-	0	-
#Deleted in new
chr19	11382846	11382949	ENSG00000187266.13|EPOR|pc|chr19:11382846:11382949:-	0	-
#Deleted in new
chr19	11382846	11382982	ENSG00000187266.13|EPOR|pc|chr19:11382846:11382982:-	0	-
#Deleted in new
chr19	11411252	11411270	ENSG00000205517.12|RGL3|pc|chr19:11411252:11411270:-	0	-
#Deleted in new
chr19	11411252	11411444	ENSG00000205517.12|RGL3|pc|chr19:11411252:11411444:-	0	-
#Deleted in new
chr1	911434	911473	ENSG00000230699.2|AL645608.3|lncRNA|chr1:911434:911473:+	0	+
#Partially deleted in new
chr19	11445388	11445846	ENSG00000130175.9|PRKCSH|pc|chr19:11445388:11445846:+	0	+
#Partially deleted in new
chr19	11449265	11449882	ENSG00000130175.9|PRKCSH|pc|chr19:11449265:11449882:+	0	+
#Deleted in new
chr19	11449778	11449987	ENSG00000130175.9|PRKCSH|pc|chr19:11449778:11449987:+	0	+
#Deleted in new
chr19	11500677	11500815	ENSG00000161914.9|ZNF653|pc|chr19:11500677:11500815:-	0	-
#Deleted in new
chr19	11504649	11505184	ENSG00000161914.9|ZNF653|pc|chr19:11504649:11505184:-	0	-
#Deleted in new
chr19	11510616	11510660	ENSG00000130159.13|ECSIT|pc|chr19:11510616:11510660:-	0	-
#Deleted in new
chr19	11519843	11519966	ENSG00000130159.13|ECSIT|pc|chr19:11519843:11519966:-	0	-
#Deleted in new
chr19	11525639	11525737	ENSG00000130159.13|ECSIT|pc|chr19:11525639:11525737:-	0	-
#Deleted in new
chr19	11541921	11542241	ENSG00000130176.7|CNN1|pc|chr19:11541921:11542241:+	0	+
#Partially deleted in new
chr19	11554588	11554794	ENSG00000130165.10|ELOF1|pc|chr19:11554588:11554794:-	0	-
#Deleted in new
chr19	11554819	11554946	ENSG00000130165.10|ELOF1|pc|chr19:11554819:11554946:-	0	-
#Deleted in new
chr19	11555173	11555253	ENSG00000130165.10|ELOF1|pc|chr19:11555173:11555253:-	0	-
#Deleted in new
chr19	11555174	11555719	ENSG00000130165.10|ELOF1|pc|chr19:11555174:11555719:-	0	-
#Deleted in new
chr19	11555344	11555467	ENSG00000130165.10|ELOF1|pc|chr19:11555344:11555467:-	0	-
#Deleted in new
chr19	11555344	11555655	ENSG00000130165.10|ELOF1|pc|chr19:11555344:11555655:-	0	-
#Deleted in new
chr19	11555521	11555715	ENSG00000130165.10|ELOF1|pc|chr19:11555521:11555715:-	0	-
#Deleted in new
chr19	11559373	11559616	ENSG00000198551.9|ZNF627|pc|chr19:11559373:11559616:+	0	+
#Deleted in new
chr19	11559447	11559616	ENSG00000198551.9|ZNF627|pc|chr19:11559447:11559616:+	0	+
#Deleted in new
chr19	11559460	11559616	ENSG00000198551.9|ZNF627|pc|chr19:11559460:11559616:+	0	+
#Deleted in new
chr19	11562125	11562224	ENSG00000198551.9|ZNF627|pc|chr19:11562125:11562224:+	0	+
#Deleted in new
chr19	11564060	11564184	ENSG00000198551.9|ZNF627|pc|chr19:11564060:11564184:+	0	+
#Deleted in new
chr19	11564444	11564492	ENSG00000198551.9|ZNF627|pc|chr19:11564444:11564492:+	0	+
#Partially deleted in new
chr19	11578023	11578194	ENSG00000102575.10|ACP5|pc|chr19:11578023:11578194:-	0	-
#Deleted in new
chr19	11578075	11578136	ENSG00000102575.10|ACP5|pc|chr19:11578075:11578136:-	0	-
#Deleted in new
chr19	11597419	11597630	ENSG00000198551.9|ZNF627|pc|chr19:11597419:11597630:+	0	+
#Deleted in new
chr19	11597461	11597630	ENSG00000198551.9|ZNF627|pc|chr19:11597461:11597630:+	0	+
#Deleted in new
chr19	11597482	11597630	ENSG00000198551.9|ZNF627|pc|chr19:11597482:11597630:+	0	+
#Deleted in new
chr19	11604209	11604278	ENSG00000198551.9|ZNF627|pc|chr19:11604209:11604278:+	0	+
#Deleted in new
chr19	11604209	11604364	ENSG00000198551.9|ZNF627|pc|chr19:11604209:11604364:+	0	+
#Deleted in new
chr19	11644238	11644361	ENSG00000197332.8|AC008543.1|lncRNA|chr19:11644238:11644361:+	0	+
#Deleted in new
chr19	11646226	11646273	ENSG00000197332.8|AC008543.1|lncRNA|chr19:11646226:11646273:+	0	+
#Deleted in new
chr19	116506	117102	ENSG00000176695.7|OR4F17|pc|chr19:116506:117102:+	0	+
#Deleted in new
chr19	11678319	11678420	ENSG00000197332.8|AC008543.1|lncRNA|chr19:11678319:11678420:+	0	+
#Deleted in new
chr19	11680391	11680972	ENSG00000197332.8|AC008543.1|lncRNA|chr19:11680391:11680972:+	0	+
#Partially deleted in new
chr19	1168693	1169146	ENSG00000064932.15|SBNO2|pc|chr19:1168693:1169146:-	0	-
#Deleted in new
chr19	11725960	11726117	ENSG00000266922.1|AC008543.3|lncRNA|chr19:11725960:11726117:-	0	-
#Deleted in new
chr19	11730449	11730783	ENSG00000266922.1|AC008543.3|lncRNA|chr19:11730449:11730783:-	0	-
#Deleted in new
chr19	11738816	11738882	ENSG00000197933.12|ZNF823|pc|chr19:11738816:11738882:-	0	-
#Deleted in new
chr19	11738816	11738945	ENSG00000197933.12|ZNF823|pc|chr19:11738816:11738945:-	0	-
#Deleted in new
chr19	11738816	11738973	ENSG00000197933.12|ZNF823|pc|chr19:11738816:11738973:-	0	-
#Deleted in new
chr19	11738816	11739009	ENSG00000197933.12|ZNF823|pc|chr19:11738816:11739009:-	0	-
#Deleted in new
chr19	11766999	11767196	ENSG00000197044.10|ZNF441|pc|chr19:11766999:11767196:+	0	+
#Deleted in new
chr19	11767091	11767196	ENSG00000197044.10|ZNF441|pc|chr19:11767091:11767196:+	0	+
#Deleted in new
chr19	11778115	11778179	ENSG00000197044.10|ZNF441|pc|chr19:11778115:11778179:+	0	+
#Deleted in new
chr19	1179239	1179333	ENSG00000118046.14|STK11|pc|chr19:1179239:1179333:+	0	+
#Partially deleted in new
chr19	11796083	11798598	ENSG00000267646.1|AC008543.5|lncRNA|chr19:11796083:11798598:-	0	-
#Deleted in new
chr19	11797666	11797799	ENSG00000177599.12|ZNF491|pc|chr19:11797666:11797799:+	0	+
#Deleted in new
chr19	11798529	11798727	ENSG00000177599.12|ZNF491|pc|chr19:11798529:11798727:+	0	+
#Deleted in new
chr19	11798575	11798727	ENSG00000177599.12|ZNF491|pc|chr19:11798575:11798727:+	0	+
#Deleted in new
chr19	11798587	11798727	ENSG00000177599.12|ZNF491|pc|chr19:11798587:11798727:+	0	+
#Deleted in new
chr19	11798606	11798727	ENSG00000177599.12|ZNF491|pc|chr19:11798606:11798727:+	0	+
#Deleted in new
chr19	11799097	11799279	ENSG00000177599.12|ZNF491|pc|chr19:11799097:11799279:+	0	+
#Deleted in new
chr19	11809376	11809622	ENSG00000177599.12|ZNF491|pc|chr19:11809376:11809622:+	0	+
#Deleted in new
chr19	11814283	11814450	ENSG00000171295.12|ZNF440|pc|chr19:11814283:11814450:+	0	+
#Deleted in new
chr19	11814286	11814450	ENSG00000171295.12|ZNF440|pc|chr19:11814286:11814450:+	0	+
#Deleted in new
chr19	11814343	11814450	ENSG00000171295.12|ZNF440|pc|chr19:11814343:11814450:+	0	+
#Deleted in new
chr19	11815808	11816049	ENSG00000171295.12|ZNF440|pc|chr19:11815808:11816049:+	0	+
#Deleted in new
chr19	11816016	11817675	ENSG00000171295.12|ZNF440|pc|chr19:11816016:11817675:+	0	+
#Deleted in new
chr19	11827566	11827640	ENSG00000171295.12|ZNF440|pc|chr19:11827566:11827640:+	0	+
#Deleted in new
chr19	11841240	11841435	ENSG00000267089.1|AC008543.4|lncRNA|chr19:11841240:11841435:-	0	-
#Deleted in new
chr19	11842192	11842439	ENSG00000267089.1|AC008543.4|lncRNA|chr19:11842192:11842439:-	0	-
#Deleted in new
chr19	11848725	11851110	ENSG00000171291.8|ZNF439|pc|chr19:11848725:11851110:+	0	+
#Deleted in new
chr19	11848760	11848930	ENSG00000171291.8|ZNF439|pc|chr19:11848760:11848930:+	0	+
#Deleted in new
chr19	11848811	11848930	ENSG00000171291.8|ZNF439|pc|chr19:11848811:11848930:+	0	+
#Deleted in new
chr19	11849062	11849313	ENSG00000171291.8|ZNF439|pc|chr19:11849062:11849313:+	0	+
#Deleted in new
chr19	11856031	11858302	ENSG00000278897.1|AC020951.1|lncRNA|chr19:11856031:11858302:+	0	+
#Deleted in new
chr19	11883550	11883750	ENSG00000171291.8|ZNF439|pc|chr19:11883550:11883750:+	0	+
#Deleted in new
chr19	11887783	11887986	ENSG00000198429.9|ZNF69|pc|chr19:11887783:11887986:+	0	+
#Deleted in new
chr19	11887817	11887986	ENSG00000198429.9|ZNF69|pc|chr19:11887817:11887986:+	0	+
#Deleted in new
chr19	11887854	11887986	ENSG00000198429.9|ZNF69|pc|chr19:11887854:11887986:+	0	+
#Deleted in new
chr19	1189408	1189659	ENSG00000118046.14|STK11|pc|chr19:1189408:1189659:+	0	+
#Deleted in new
chr19	11913408	11914329	ENSG00000198429.9|ZNF69|pc|chr19:11913408:11914329:+	0	+
#Deleted in new
chr19	11925067	11925273	ENSG00000196757.7|ZNF700|pc|chr19:11925067:11925273:+	0	+
#Deleted in new
chr19	11925074	11925273	ENSG00000267179.1|AC008770.3|pc|chr19:11925074:11925273:+	0	+
#Deleted in new
chr19	11925110	11925273	ENSG00000267179.1|AC008770.3|pc|chr19:11925110:11925273:+	0	+
#Deleted in new
chr19	11925119	11925273	ENSG00000267179.1|AC008770.3|pc|chr19:11925119:11925273:+	0	+
#Deleted in new
chr19	11939958	11940026	ENSG00000267274.1|AC008770.4|lncRNA|chr19:11939958:11940026:+	0	+
#Deleted in new
chr1	911944	914948	ENSG00000230699.2|AL645608.3|lncRNA|chr1:911944:914948:+	0	+
#Duplicated in new
chr19	11950241	11950619	ENSG00000267179.1|AC008770.3|pc|chr19:11950241:11950619:+	0	+
#Deleted in new
chr19	11956504	11956642	ENSG00000267179.1|AC008770.3|pc|chr19:11956504:11956642:+	0	+
#Deleted in new
chr19	11961660	11961758	ENSG00000267179.1|AC008770.3|pc|chr19:11961660:11961758:+	0	+
#Deleted in new
chr19	11965036	11965211	ENSG00000197054.11|ZNF763|pc|chr19:11965036:11965211:+	0	+
#Deleted in new
chr19	11965053	11965211	ENSG00000197054.11|ZNF763|pc|chr19:11965053:11965211:+	0	+
#Deleted in new
chr19	11965081	11965211	ENSG00000197054.11|ZNF763|pc|chr19:11965081:11965211:+	0	+
#Deleted in new
chr19	11987616	11987823	ENSG00000219665.8|AC008770.1|lncRNA|chr19:11987616:11987823:+	0	+
#Deleted in new
chr19	11987655	11987823	ENSG00000219665.8|AC008770.1|lncRNA|chr19:11987655:11987823:+	0	+
#Deleted in new
chr19	11987670	11987823	ENSG00000219665.8|AC008770.1|lncRNA|chr19:11987670:11987823:+	0	+
#Deleted in new
chr19	11987678	11987823	ENSG00000219665.8|AC008770.1|lncRNA|chr19:11987678:11987823:+	0	+
#Deleted in new
chr19	11987766	11987823	ENSG00000219665.8|AC008770.1|lncRNA|chr19:11987766:11987823:+	0	+
#Deleted in new
chr19	11990168	11990381	ENSG00000219665.8|AC008770.1|lncRNA|chr19:11990168:11990381:+	0	+
#Deleted in new
chr19	12003391	12003595	ENSG00000219665.8|AC008770.1|lncRNA|chr19:12003391:12003595:+	0	+
#Deleted in new
chr19	12021929	12022189	ENSG00000197647.11|ZNF433|pc|chr19:12021929:12022189:-	0	-
#Deleted in new
chr19	12023194	12027194	ENSG00000219665.8|AC008770.1|lncRNA|chr19:12023194:12027194:+	0	+
#Deleted in new
chr19	12026193	12027194	ENSG00000219665.8|AC008770.1|lncRNA|chr19:12026193:12027194:+	0	+
#Deleted in new
chr19	12030139	12030198	ENSG00000197647.11|ZNF433|pc|chr19:12030139:12030198:-	0	-
#Deleted in new
chr19	12034575	12034592	ENSG00000219665.8|AC008770.1|lncRNA|chr19:12034575:12034592:+	0	+
#Deleted in new
chr19	12034827	12034874	ENSG00000197647.11|ZNF433|pc|chr19:12034827:12034874:-	0	-
#Deleted in new
chr19	12035536	12035669	ENSG00000197647.11|ZNF433|pc|chr19:12035536:12035669:-	0	-
#Deleted in new
chr19	12035536	12035676	ENSG00000197647.11|ZNF433|pc|chr19:12035536:12035676:-	0	-
#Deleted in new
chr19	12035536	12035688	ENSG00000197647.11|ZNF433|pc|chr19:12035536:12035688:-	0	-
#Deleted in new
chr19	12035536	12035696	ENSG00000197647.11|ZNF433|pc|chr19:12035536:12035696:-	0	-
#Deleted in new
chr19	12035536	12035703	ENSG00000197647.11|ZNF433|pc|chr19:12035536:12035703:-	0	-
#Deleted in new
chr19	12035536	12035710	ENSG00000197647.11|ZNF433|pc|chr19:12035536:12035710:-	0	-
#Deleted in new
chr19	12035536	12035712	ENSG00000197647.11|ZNF433|pc|chr19:12035536:12035712:-	0	-
#Deleted in new
chr19	12035536	12035741	ENSG00000197647.11|ZNF433|pc|chr19:12035536:12035741:-	0	-
#Deleted in new
chr19	12035546	12035678	ENSG00000197647.11|ZNF433|pc|chr19:12035546:12035678:-	0	-
#Deleted in new
chr19	12035553	12035772	ENSG00000219665.8|AC008770.1|lncRNA|chr19:12035553:12035772:+	0	+
#Deleted in new
chr19	12035553	12035914	ENSG00000219665.8|AC008770.1|lncRNA|chr19:12035553:12035914:+	0	+
#Deleted in new
chr19	12035822	12035854	ENSG00000219665.8|AC008770.1|lncRNA|chr19:12035822:12035854:+	0	+
#Partially deleted in new
chr19	12046081	12046275	ENSG00000219665.8|AC008770.1|lncRNA|chr19:12046081:12046275:+	0	+
#Partially deleted in new
chr19	12064698	12064876	ENSG00000223547.9|ZNF844|pc|chr19:12064698:12064876:+	0	+
#Partially deleted in new
chr19	12064730	12064876	ENSG00000223547.9|ZNF844|pc|chr19:12064730:12064876:+	0	+
#Partially deleted in new
chr19	12064809	12064876	ENSG00000223547.9|ZNF844|pc|chr19:12064809:12064876:+	0	+
#Deleted in new
chr19	12092262	12092470	ENSG00000214189.8|ZNF788|pc|chr19:12092262:12092470:+	0	+
#Deleted in new
chr19	12092306	12092470	ENSG00000214189.8|ZNF788|pc|chr19:12092306:12092470:+	0	+
#Deleted in new
chr19	12092335	12092470	ENSG00000214189.8|ZNF788|pc|chr19:12092335:12092470:+	0	+
#Deleted in new
chr19	12092380	12092470	ENSG00000214189.8|ZNF788|pc|chr19:12092380:12092470:+	0	+
#Deleted in new
chr19	12092842	12093052	ENSG00000132010.15|ZNF20|pc|chr19:12092842:12093052:-	0	-
#Deleted in new
chr19	12093835	12093895	ENSG00000214189.8|ZNF788|pc|chr19:12093835:12093895:+	0	+
#Deleted in new
chr19	12094065	12094184	ENSG00000214189.8|ZNF788|pc|chr19:12094065:12094184:+	0	+
#Deleted in new
chr19	12097856	12098141	ENSG00000214189.8|ZNF788|pc|chr19:12097856:12098141:+	0	+
#Deleted in new
chr19	12097856	12098214	ENSG00000214189.8|ZNF788|pc|chr19:12097856:12098214:+	0	+
#Deleted in new
chr19	12097856	12100788	ENSG00000214189.8|ZNF788|pc|chr19:12097856:12100788:+	0	+
#Deleted in new
chr19	12130484	12130699	ENSG00000132010.15|ZNF20|pc|chr19:12130484:12130699:-	0	-
#Deleted in new
chr19	12136850	12136874	ENSG00000132010.15|ZNF20|pc|chr19:12136850:12136874:-	0	-
#Deleted in new
chr19	12136850	12136876	ENSG00000132010.15|ZNF20|pc|chr19:12136850:12136876:-	0	-
#Deleted in new
chr19	12136905	12137274	ENSG00000132010.15|ZNF20|pc|chr19:12136905:12137274:-	0	-
#Deleted in new
chr19	12137006	12137235	ENSG00000214189.8|ZNF788|pc|chr19:12137006:12137235:+	0	+
#Deleted in new
chr19	12137657	12137702	ENSG00000132010.15|ZNF20|pc|chr19:12137657:12137702:-	0	-
#Deleted in new
chr19	12156555	12156714	ENSG00000257591.5|ZNF625|pc|chr19:12156555:12156714:-	0	-
#Deleted in new
chr19	12156555	12156729	ENSG00000257591.5|ZNF625|pc|chr19:12156555:12156729:-	0	-
#Deleted in new
chr19	12156555	12156731	ENSG00000213297.8|ZNF625-ZNF20|pc|chr19:12156555:12156731:-	0	-
#Deleted in new
chr19	1216267	1216398	ENSG00000118046.14|STK11|pc|chr19:1216267:1216398:+	0	+
#Deleted in new
chr19	12163063	12163206	ENSG00000196646.11|ZNF136|pc|chr19:12163063:12163206:+	0	+
#Deleted in new
chr19	12163115	12163206	ENSG00000196646.11|ZNF136|pc|chr19:12163115:12163206:+	0	+
#Deleted in new
chr19	12163759	12163816	ENSG00000196646.11|ZNF136|pc|chr19:12163759:12163816:+	0	+
#Deleted in new
chr19	12164628	12164874	ENSG00000196646.11|ZNF136|pc|chr19:12164628:12164874:+	0	+
#Deleted in new
chr19	12169281	12169391	ENSG00000196646.11|ZNF136|pc|chr19:12169281:12169391:+	0	+
#Split in new
chr19	12184617	12185911	ENSG00000196646.11|ZNF136|pc|chr19:12184617:12185911:+	0	+
#Partially deleted in new
chr19	1221212	1222006	ENSG00000118046.14|STK11|pc|chr19:1221212:1222006:+	0	+
#Deleted in new
chr19	12224685	12225279	ENSG00000197857.13|ZNF44|pc|chr19:12224685:12225279:-	0	-
#Deleted in new
chr19	12226158	12226527	ENSG00000197857.13|ZNF44|pc|chr19:12226158:12226527:-	0	-
#Deleted in new
chr19	12226371	12226527	ENSG00000197857.13|ZNF44|pc|chr19:12226371:12226527:-	0	-
#Deleted in new
chr19	12230459	12230515	ENSG00000197857.13|ZNF44|pc|chr19:12230459:12230515:-	0	-
#Partially deleted in new
chr19	1223637	1226663	ENSG00000118046.14|STK11|pc|chr19:1223637:1226663:+	0	+
#Partially deleted in new
chr19	12237451	12237589	ENSG00000197857.13|ZNF44|pc|chr19:12237451:12237589:-	0	-
#Deleted in new
chr19	12237898	12238102	ENSG00000197857.13|ZNF44|pc|chr19:12237898:12238102:-	0	-
#Deleted in new
chr19	12242706	12242844	ENSG00000197857.13|ZNF44|pc|chr19:12242706:12242844:-	0	-
#Deleted in new
chr19	12244580	12244673	ENSG00000197857.13|ZNF44|pc|chr19:12244580:12244673:-	0	-
#Partially deleted in new
chr19	1226453	1228012	ENSG00000118046.14|STK11|pc|chr19:1226453:1228012:+	0	+
#Partially deleted in new
chr19	1227592	1228094	ENSG00000118046.14|STK11|pc|chr19:1227592:1228094:+	0	+
#Partially deleted in new
chr19	1227592	1228095	ENSG00000118046.14|STK11|pc|chr19:1227592:1228095:+	0	+
#Deleted in new
chr19	12291027	12291250	ENSG00000197857.13|ZNF44|pc|chr19:12291027:12291250:-	0	-
#Deleted in new
chr19	12291219	12291250	ENSG00000197857.13|ZNF44|pc|chr19:12291219:12291250:-	0	-
#Deleted in new
chr19	12293231	12293375	ENSG00000197857.13|ZNF44|pc|chr19:12293231:12293375:-	0	-
#Deleted in new
chr19	12294691	12294794	ENSG00000197857.13|ZNF44|pc|chr19:12294691:12294794:-	0	-
#Deleted in new
chr19	12294691	12294813	ENSG00000197857.13|ZNF44|pc|chr19:12294691:12294813:-	0	-
#Deleted in new
chr19	12294691	12294822	ENSG00000197857.13|ZNF44|pc|chr19:12294691:12294822:-	0	-
#Deleted in new
chr19	12294691	12294834	ENSG00000197857.13|ZNF44|pc|chr19:12294691:12294834:-	0	-
#Deleted in new
chr19	12294691	12294851	ENSG00000197857.13|ZNF44|pc|chr19:12294691:12294851:-	0	-
#Deleted in new
chr19	12294691	12294880	ENSG00000197857.13|ZNF44|pc|chr19:12294691:12294880:-	0	-
#Deleted in new
chr19	12294691	12294887	ENSG00000197857.13|ZNF44|pc|chr19:12294691:12294887:-	0	-
#Deleted in new
chr19	12324918	12324979	ENSG00000188868.13|ZNF563|pc|chr19:12324918:12324979:-	0	-
#Deleted in new
chr19	12333479	12333492	ENSG00000188868.13|ZNF563|pc|chr19:12333479:12333492:-	0	-
#Deleted in new
chr19	12333479	12333502	ENSG00000188868.13|ZNF563|pc|chr19:12333479:12333502:-	0	-
#Deleted in new
chr19	12333479	12333688	ENSG00000188868.13|ZNF563|pc|chr19:12333479:12333688:-	0	-
#Deleted in new
chr19	12333479	12333720	ENSG00000188868.13|ZNF563|pc|chr19:12333479:12333720:-	0	-
#Deleted in new
chr19	12363553	12363631	ENSG00000198342.9|ZNF442|pc|chr19:12363553:12363631:-	0	-
#Deleted in new
chr19	12363553	12363671	ENSG00000198342.9|ZNF442|pc|chr19:12363553:12363671:-	0	-
#Deleted in new
chr19	12364801	12365243	ENSG00000198342.9|ZNF442|pc|chr19:12364801:12365243:-	0	-
#Deleted in new
chr19	12365532	12365633	ENSG00000198342.9|ZNF442|pc|chr19:12365532:12365633:-	0	-
#Deleted in new
chr19	12365532	12365641	ENSG00000198342.9|ZNF442|pc|chr19:12365532:12365641:-	0	-
#Deleted in new
chr19	12365532	12365661	ENSG00000198342.9|ZNF442|pc|chr19:12365532:12365661:-	0	-
#Deleted in new
chr19	12365802	12365905	ENSG00000198342.9|ZNF442|pc|chr19:12365802:12365905:-	0	-
#Deleted in new
chr19	1238403	1239040	ENSG00000267778.1|AC004221.1|lncRNA|chr19:1238403:1239040:+	0	+
#Split in new
chr19	12393296	12395120	ENSG00000196466.10|ZNF799|pc|chr19:12393296:12395120:-	0	-
#Deleted in new
chr19	1239363	1239522	ENSG00000267778.1|AC004221.1|lncRNA|chr19:1239363:1239522:+	0	+
#Deleted in new
chr19	12398133	12398251	ENSG00000196466.10|ZNF799|pc|chr19:12398133:12398251:-	0	-
#Partially deleted in new
chr19	12400323	12400980	ENSG00000196466.10|ZNF799|pc|chr19:12400323:12400980:-	0	-
#Partially deleted in new
chr19	1241767	1243354	ENSG00000099624.7|ATP5D|pc|chr19:1241767:1243354:+	0	+
#Deleted in new
chr19	12450934	12451302	ENSG00000234848.1|AC008758.2|lncRNA|chr19:12450934:12451302:+	0	+
#Deleted in new
chr19	12457430	12457576	ENSG00000269755.1|AC008758.6|pc|chr19:12457430:12457576:-	0	-
#Deleted in new
chr19	12460558	12460705	ENSG00000234848.1|AC008758.2|lncRNA|chr19:12460558:12460705:+	0	+
#Deleted in new
chr19	12484654	12484816	ENSG00000269755.1|AC008758.6|pc|chr19:12484654:12484816:-	0	-
#Deleted in new
chr19	12484654	12484829	ENSG00000242852.6|ZNF709|pc|chr19:12484654:12484829:-	0	-
#Deleted in new
chr19	12494817	12495504	ENSG00000242852.6|ZNF709|pc|chr19:12494817:12495504:-	0	-
#Deleted in new
chr19	12513743	12513833	ENSG00000242852.6|ZNF709|pc|chr19:12513743:12513833:-	0	-
#Deleted in new
chr19	12513743	12513854	ENSG00000242852.6|ZNF709|pc|chr19:12513743:12513854:-	0	-
#Partially deleted in new
chr19	12529767	12530236	ENSG00000269560.1|AC010422.4|lncRNA|chr19:12529767:12530236:-	0	-
#Deleted in new
chr19	12532909	12532973	ENSG00000269560.1|AC010422.4|lncRNA|chr19:12532909:12532973:-	0	-
#Deleted in new
chr19	12541424	12541537	ENSG00000249709.7|ZNF564|pc|chr19:12541424:12541537:-	0	-
#Deleted in new
chr19	12548712	12548862	ENSG00000249709.7|ZNF564|pc|chr19:12548712:12548862:-	0	-
#Deleted in new
chr19	12550241	12550652	ENSG00000249709.7|ZNF564|pc|chr19:12550241:12550652:-	0	-
#Deleted in new
chr19	12550462	12550652	ENSG00000249709.7|ZNF564|pc|chr19:12550462:12550652:-	0	-
#Deleted in new
chr19	12551329	12551432	ENSG00000249709.7|ZNF564|pc|chr19:12551329:12551432:-	0	-
#Deleted in new
chr19	12551329	12551434	ENSG00000249709.7|ZNF564|pc|chr19:12551329:12551434:-	0	-
#Deleted in new
chr19	12551329	12551467	ENSG00000249709.7|ZNF564|pc|chr19:12551329:12551467:-	0	-
#Deleted in new
chr19	12551329	12551474	ENSG00000196826.7|AC008758.1|pc|chr19:12551329:12551474:-	0	-
#Deleted in new
chr19	12551329	12551529	ENSG00000249709.7|ZNF564|pc|chr19:12551329:12551529:-	0	-
#Deleted in new
chr19	12551329	12551542	ENSG00000249709.7|ZNF564|pc|chr19:12551329:12551542:-	0	-
#Deleted in new
chr19	12552596	12552869	ENSG00000230310.1|AC010422.1|lncRNA|chr19:12552596:12552869:+	0	+
#Deleted in new
chr19	12553374	12553644	ENSG00000230310.1|AC010422.1|lncRNA|chr19:12553374:12553644:+	0	+
#Split in new
chr19	12577503	12580975	ENSG00000269693.1|AC010422.6|pc|chr19:12577503:12580975:-	0	-
#Deleted in new
chr19	12597148	12597311	ENSG00000188033.9|ZNF490|pc|chr19:12597148:12597311:-	0	-
#Deleted in new
chr19	12609869	12609974	ENSG00000188033.9|ZNF490|pc|chr19:12609869:12609974:-	0	-
#Deleted in new
chr19	12610563	12610803	ENSG00000188033.9|ZNF490|pc|chr19:12610563:12610803:-	0	-
#Deleted in new
chr19	12610917	12611082	ENSG00000173875.13|ZNF791|pc|chr19:12610917:12611082:+	0	+
#Deleted in new
chr19	12610919	12611082	ENSG00000173875.13|ZNF791|pc|chr19:12610919:12611082:+	0	+
#Deleted in new
chr19	12610953	12611082	ENSG00000173875.13|ZNF791|pc|chr19:12610953:12611082:+	0	+
#Deleted in new
chr19	12610957	12611082	ENSG00000173875.13|ZNF791|pc|chr19:12610957:12611082:+	0	+
#Deleted in new
chr19	12612225	12612316	ENSG00000173875.13|ZNF791|pc|chr19:12612225:12612316:+	0	+
#Deleted in new
chr19	12612225	12612365	ENSG00000173875.13|ZNF791|pc|chr19:12612225:12612365:+	0	+
#Deleted in new
chr19	12612225	12612394	ENSG00000173875.13|ZNF791|pc|chr19:12612225:12612394:+	0	+
#Split in new
chr19	12627720	12633840	ENSG00000173875.13|ZNF791|pc|chr19:12627720:12633840:+	0	+
#Deleted in new
chr19	12634410	12634488	ENSG00000188033.9|ZNF490|pc|chr19:12634410:12634488:-	0	-
#Deleted in new
chr19	12637275	12637440	ENSG00000188033.9|ZNF490|pc|chr19:12637275:12637440:-	0	-
#Deleted in new
chr19	12640064	12640098	ENSG00000188033.9|ZNF490|pc|chr19:12640064:12640098:-	0	-
#Partially deleted in new
chr19	1264252	1264463	ENSG00000099622.13|CIRBP|pc|chr19:1264252:1264463:+	0	+
#Partially deleted in new
chr19	12657210	12657235	ENSG00000104774.12|MAN2B1|pc|chr19:12657210:12657235:-	0	-
#Partially deleted in new
chr19	12658730	12659010	ENSG00000104774.12|MAN2B1|pc|chr19:12658730:12659010:-	0	-
#Partially deleted in new
chr19	12660896	12661376	ENSG00000104774.12|MAN2B1|pc|chr19:12660896:12661376:-	0	-
#Deleted in new
chr19	12672462	12672549	ENSG00000123154.11|WDR83|pc|chr19:12672462:12672549:+	0	+
#Partially deleted in new
chr19	12676016	12676918	ENSG00000095059.15|DHPS|pc|chr19:12676016:12676918:-	0	-
#Deleted in new
chr19	12681032	12681161	ENSG00000095059.15|DHPS|pc|chr19:12681032:12681161:-	0	-
#Deleted in new
chr19	12681032	12681206	ENSG00000095059.15|DHPS|pc|chr19:12681032:12681206:-	0	-
#Deleted in new
chr19	12681032	12681211	ENSG00000095059.15|DHPS|pc|chr19:12681032:12681211:-	0	-
#Deleted in new
chr19	12681304	12681332	ENSG00000095059.15|DHPS|pc|chr19:12681304:12681332:-	0	-
#Deleted in new
chr19	12681358	12681413	ENSG00000095059.15|DHPS|pc|chr19:12681358:12681413:-	0	-
#Deleted in new
chr19	12682692	12683228	ENSG00000268945.1|AC010422.2|lncRNA|chr19:12682692:12683228:-	0	-
#Deleted in new
chr19	12687180	12687279	ENSG00000268945.1|AC010422.2|lncRNA|chr19:12687180:12687279:-	0	-
#Partially deleted in new
chr19	1269824	1270241	ENSG00000267493.3|CIRBP-AS1|lncRNA|chr19:1269824:1270241:-	0	-
#Deleted in new
chr19	1269911	1269915	ENSG00000099622.13|CIRBP|pc|chr19:1269911:1269915:+	0	+
#Deleted in new
chr19	12725516	12725544	ENSG00000267004.1|AC018761.1|lncRNA|chr19:12725516:12725544:-	0	-
#Deleted in new
chr19	12725817	12725886	ENSG00000267004.1|AC018761.1|lncRNA|chr19:12725817:12725886:-	0	-
#Partially deleted in new
chr19	1273553	1274440	ENSG00000099622.13|CIRBP|pc|chr19:1273553:1274440:+	0	+
#Deleted in new
chr19	1274306	1274440	ENSG00000099622.13|CIRBP|pc|chr19:1274306:1274440:+	0	+
#Deleted in new
chr19	1274306	1274444	ENSG00000099622.13|CIRBP|pc|chr19:1274306:1274444:+	0	+
#Deleted in new
chr19	1274306	1274480	ENSG00000099622.13|CIRBP|pc|chr19:1274306:1274480:+	0	+
#Deleted in new
chr19	1274306	1274595	ENSG00000099622.13|CIRBP|pc|chr19:1274306:1274595:+	0	+
#Deleted in new
chr19	1274306	1274810	ENSG00000099622.13|CIRBP|pc|chr19:1274306:1274810:+	0	+
#Deleted in new
chr19	1274350	1274440	ENSG00000099622.13|CIRBP|pc|chr19:1274350:1274440:+	0	+
#Deleted in new
chr19	1274648	1274773	ENSG00000099622.13|CIRBP|pc|chr19:1274648:1274773:+	0	+
#Deleted in new
chr19	1274648	1274805	ENSG00000099622.13|CIRBP|pc|chr19:1274648:1274805:+	0	+
#Deleted in new
chr19	1274648	1274806	ENSG00000099622.13|CIRBP|pc|chr19:1274648:1274806:+	0	+
#Deleted in new
chr19	1274648	1274810	ENSG00000099622.13|CIRBP|pc|chr19:1274648:1274810:+	0	+
#Deleted in new
chr19	1274648	1274880	ENSG00000099622.13|CIRBP|pc|chr19:1274648:1274880:+	0	+
#Deleted in new
chr19	1274651	1274810	ENSG00000099622.13|CIRBP|pc|chr19:1274651:1274810:+	0	+
#Deleted in new
chr19	1276020	1276103	ENSG00000228300.13|C19orf24|pc|chr19:1276020:1276103:+	0	+
#Partially deleted in new
chr19	1276092	1277299	ENSG00000228300.13|C19orf24|pc|chr19:1276092:1277299:+	0	+
#Deleted in new
chr19	1276099	1276673	ENSG00000228300.13|C19orf24|pc|chr19:1276099:1276673:+	0	+
#Deleted in new
chr19	1276875	1276917	ENSG00000228300.13|C19orf24|pc|chr19:1276875:1276917:+	0	+
#Deleted in new
chr19	12774158	12774225	ENSG00000095066.11|HOOK2|pc|chr19:12774158:12774225:-	0	-
#Deleted in new
chr19	1277869	1277917	ENSG00000228300.13|C19orf24|pc|chr19:1277869:1277917:+	0	+
#Deleted in new
chr19	1278776	1278836	ENSG00000228300.13|C19orf24|pc|chr19:1278776:1278836:+	0	+
#Deleted in new
chr19	1278776	1279244	ENSG00000228300.13|C19orf24|pc|chr19:1278776:1279244:+	0	+
#Deleted in new
chr19	1278776	1279249	ENSG00000228300.13|C19orf24|pc|chr19:1278776:1279249:+	0	+
#Partially deleted in new
chr19	12807418	12807957	ENSG00000104889.5|RNASEH2A|pc|chr19:12807418:12807957:+	0	+
#Deleted in new
chr19	12825177	12825182	ENSG00000095066.11|HOOK2|pc|chr19:12825177:12825182:-	0	-
#Deleted in new
chr19	12872708	12872740	ENSG00000095066.11|HOOK2|pc|chr19:12872708:12872740:-	0	-
#Deleted in new
chr19	12883822	12884088	ENSG00000267735.1|AC020934.2|lncRNA|chr19:12883822:12884088:+	0	+
#Deleted in new
chr19	12892316	12892434	ENSG00000105607.12|GCDH|pc|chr19:12892316:12892434:+	0	+
#Deleted in new
chr19	12892386	12892434	ENSG00000105607.12|GCDH|pc|chr19:12892386:12892434:+	0	+
#Deleted in new
chr19	12906104	12906203	ENSG00000161860.7|SYCE2|pc|chr19:12906104:12906203:-	0	-
#Deleted in new
chr19	12970450	12970535	ENSG00000179284.5|DAND5|pc|chr19:12970450:12970535:+	0	+
#Deleted in new
chr19	13131570	13131895	ENSG00000266897.1|AC005546.1|lncRNA|chr19:13131570:13131895:+	0	+
#Deleted in new
chr19	13132344	13132410	ENSG00000266897.1|AC005546.1|lncRNA|chr19:13132344:13132410:+	0	+
#Deleted in new
chr19	13145287	13145385	ENSG00000104915.14|STX10|pc|chr19:13145287:13145385:-	0	-
#Deleted in new
chr19	13145287	13145395	ENSG00000104915.14|STX10|pc|chr19:13145287:13145395:-	0	-
#Deleted in new
chr19	13145287	13145414	ENSG00000104915.14|STX10|pc|chr19:13145287:13145414:-	0	-
#Deleted in new
chr19	13145302	13145395	ENSG00000104915.14|STX10|pc|chr19:13145302:13145395:-	0	-
#Deleted in new
chr19	13149028	13149091	ENSG00000104915.14|STX10|pc|chr19:13149028:13149091:-	0	-
#Deleted in new
chr19	13150414	13150552	ENSG00000160888.6|IER2|pc|chr19:13150414:13150552:+	0	+
#Deleted in new
chr19	13150432	13150552	ENSG00000160888.6|IER2|pc|chr19:13150432:13150552:+	0	+
#Deleted in new
chr19	1321224	1321990	ENSG00000267372.2|AC005330.1|lncRNA|chr19:1321224:1321990:+	0	+
#Deleted in new
chr19	1322374	1322846	ENSG00000267372.2|AC005330.1|lncRNA|chr19:1322374:1322846:+	0	+
#Partially deleted in new
chr19	13256187	13259166	ENSG00000141837.19|CACNA1A|pc|chr19:13256187:13259166:-	0	-
#Split in new
chr19	13259365	13262705	ENSG00000141837.19|CACNA1A|pc|chr19:13259365:13262705:-	0	-
#Partially deleted in new
chr19	13259563	13260234	ENSG00000141837.19|CACNA1A|pc|chr19:13259563:13260234:-	0	-
#Partially deleted in new
chr19	13262733	13263510	ENSG00000141837.19|CACNA1A|pc|chr19:13262733:13263510:-	0	-
#Deleted in new
chr19	13306563	13306608	ENSG00000141837.19|CACNA1A|pc|chr19:13306563:13306608:-	0	-
#Deleted in new
chr19	13518796	13519503	ENSG00000141837.19|CACNA1A|pc|chr19:13518796:13519503:-	0	-
#Deleted in new
chr19	13518974	13519503	ENSG00000141837.19|CACNA1A|pc|chr19:13518974:13519503:-	0	-
#Deleted in new
chr19	13520165	13520309	ENSG00000141837.19|CACNA1A|pc|chr19:13520165:13520309:-	0	-
#Deleted in new
chr19	1358587	1358693	ENSG00000160953.15|MUM1|pc|chr19:1358587:1358693:+	0	+
#Deleted in new
chr19	1358587	1358700	ENSG00000160953.15|MUM1|pc|chr19:1358587:1358700:+	0	+
#Partially deleted in new
chr19	1358587	1359894	ENSG00000160953.15|MUM1|pc|chr19:1358587:1359894:+	0	+
#Deleted in new
chr19	1361895	1362351	ENSG00000160953.15|MUM1|pc|chr19:1361895:1362351:+	0	+
#Deleted in new
chr19	1362249	1362351	ENSG00000160953.15|MUM1|pc|chr19:1362249:1362351:+	0	+
#Deleted in new
chr19	1371233	1371390	ENSG00000160953.15|MUM1|pc|chr19:1371233:1371390:+	0	+
#Deleted in new
chr19	1371322	1371386	ENSG00000160953.15|MUM1|pc|chr19:1371322:1371386:+	0	+
#Partially deleted in new
chr19	1372098	1373160	ENSG00000160953.15|MUM1|pc|chr19:1372098:1373160:+	0	+
#Partially deleted in new
chr19	1372237	1374364	ENSG00000279488.1|AC004623.1|lncRNA|chr19:1372237:1374364:-	0	-
#Deleted in new
chr19	13731759	13731931	ENSG00000104957.13|CCDC130|pc|chr19:13731759:13731931:+	0	+
#Deleted in new
chr19	13731759	13731950	ENSG00000104957.13|CCDC130|pc|chr19:13731759:13731950:+	0	+
#Deleted in new
chr19	13731761	13731950	ENSG00000104957.13|CCDC130|pc|chr19:13731761:13731950:+	0	+
#Deleted in new
chr19	13731766	13732068	ENSG00000104957.13|CCDC130|pc|chr19:13731766:13732068:+	0	+
#Deleted in new
chr19	13732174	13732285	ENSG00000104957.13|CCDC130|pc|chr19:13732174:13732285:+	0	+
#Deleted in new
chr19	13732174	13732602	ENSG00000104957.13|CCDC130|pc|chr19:13732174:13732602:+	0	+
#Partially deleted in new
chr19	1373506	1374371	ENSG00000160953.15|MUM1|pc|chr19:1373506:1374371:+	0	+
#Deleted in new
chr19	13761390	13761568	ENSG00000104957.13|CCDC130|pc|chr19:13761390:13761568:+	0	+
#Deleted in new
chr19	13761490	13761568	ENSG00000104957.13|CCDC130|pc|chr19:13761490:13761568:+	0	+
#Partially deleted in new
chr19	1376518	1377094	ENSG00000160953.15|MUM1|pc|chr19:1376518:1377094:+	0	+
#Partially deleted in new
chr19	1376518	1378428	ENSG00000160953.15|MUM1|pc|chr19:1376518:1378428:+	0	+
#Partially deleted in new
chr19	1376518	1378431	ENSG00000160953.15|MUM1|pc|chr19:1376518:1378431:+	0	+
#Deleted in new
chr19	1376772	1377080	ENSG00000267755.1|AC005329.2|lncRNA|chr19:1376772:1377080:-	0	-
#Deleted in new
chr19	1376772	1377086	ENSG00000267755.1|AC005329.2|lncRNA|chr19:1376772:1377086:-	0	-
#Deleted in new
chr19	13768358	13768447	ENSG00000037757.13|MRI1|pc|chr19:13768358:13768447:+	0	+
#Partially deleted in new
chr19	13768358	13768557	ENSG00000037757.13|MRI1|pc|chr19:13768358:13768557:+	0	+
#Partially deleted in new
chr19	13768358	13768581	ENSG00000037757.13|MRI1|pc|chr19:13768358:13768581:+	0	+
#Deleted in new
chr19	1377184	1377238	ENSG00000267755.1|AC005329.2|lncRNA|chr19:1377184:1377238:-	0	-
#Partially deleted in new
chr19	13772120	13774282	ENSG00000037757.13|MRI1|pc|chr19:13772120:13774282:+	0	+
#Deleted in new
chr19	13773256	13773631	ENSG00000267633.1|AC008686.1|lncRNA|chr19:13773256:13773631:-	0	-
#Deleted in new
chr19	13773256	13773633	ENSG00000267633.1|AC008686.1|lncRNA|chr19:13773256:13773633:-	0	-
#Deleted in new
chr19	13773816	13774118	ENSG00000267633.1|AC008686.1|lncRNA|chr19:13773816:13774118:-	0	-
#Deleted in new
chr19	1377442	1377520	ENSG00000267755.1|AC005329.2|lncRNA|chr19:1377442:1377520:-	0	-
#Deleted in new
chr19	13774823	13774903	ENSG00000104979.8|C19orf53|pc|chr19:13774823:13774903:+	0	+
#Deleted in new
chr19	13775470	13775613	ENSG00000104979.8|C19orf53|pc|chr19:13775470:13775613:+	0	+
#Deleted in new
chr19	13775476	13775613	ENSG00000104979.8|C19orf53|pc|chr19:13775476:13775613:+	0	+
#Partially deleted in new
chr19	13834515	13836289	ENSG00000267519.5|AC020916.1|lncRNA|chr19:13834515:13836289:-	0	-
#Deleted in new
chr19	1384050	1384156	ENSG00000115286.19|NDUFS7|pc|chr19:1384050:1384156:+	0	+
#Deleted in new
chr19	1386517	1386639	ENSG00000115286.19|NDUFS7|pc|chr19:1386517:1386639:+	0	+
#Deleted in new
chr19	13865416	13865437	ENSG00000187556.7|NANOS3|pc|chr19:13865416:13865437:+	0	+
#Deleted in new
chr19	1386627	1386639	ENSG00000115286.19|NDUFS7|pc|chr19:1386627:1386639:+	0	+
#Deleted in new
chr19	1386803	1387162	ENSG00000280486.1|AC005329.3|lncRNA|chr19:1386803:1387162:-	0	-
#Partially deleted in new
chr19	13880441	13880750	ENSG00000187556.7|NANOS3|pc|chr19:13880441:13880750:+	0	+
#Partially deleted in new
chr19	13880441	13880755	ENSG00000187556.7|NANOS3|pc|chr19:13880441:13880755:+	0	+
#Partially deleted in new
chr19	13880441	13880757	ENSG00000187556.7|NANOS3|pc|chr19:13880441:13880757:+	0	+
#Partially deleted in new
chr19	1388524	1388799	ENSG00000115286.19|NDUFS7|pc|chr19:1388524:1388799:+	0	+
#Partially deleted in new
chr19	13885269	13885469	ENSG00000132016.11|C19orf57|pc|chr19:13885269:13885469:-	0	-
#Partially deleted in new
chr19	1388832	1391050	ENSG00000115286.19|NDUFS7|pc|chr19:1388832:1391050:+	0	+
#Partially deleted in new
chr19	1391841	1395584	ENSG00000115286.19|NDUFS7|pc|chr19:1391841:1395584:+	0	+
#Partially deleted in new
chr19	1392169	1393606	ENSG00000248015.6|AC005329.1|lncRNA|chr19:1392169:1393606:-	0	-
#Partially deleted in new
chr19	13927174	13927553	ENSG00000132024.17|CC2D1A|pc|chr19:13927174:13927553:+	0	+
#Partially deleted in new
chr19	1393241	1393661	ENSG00000115286.19|NDUFS7|pc|chr19:1393241:1393661:+	0	+
#Partially deleted in new
chr19	1393241	1393710	ENSG00000115286.19|NDUFS7|pc|chr19:1393241:1393710:+	0	+
#Partially deleted in new
chr19	1393241	1393877	ENSG00000115286.19|NDUFS7|pc|chr19:1393241:1393877:+	0	+
#Partially deleted in new
chr19	1393241	1395581	ENSG00000115286.19|NDUFS7|pc|chr19:1393241:1395581:+	0	+
#Partially deleted in new
chr19	1393241	1395584	ENSG00000115286.19|NDUFS7|pc|chr19:1393241:1395584:+	0	+
#Deleted in new
chr19	1393565	1393602	ENSG00000248015.6|AC005329.1|lncRNA|chr19:1393565:1393602:-	0	-
#Deleted in new
chr19	1393577	1393606	ENSG00000248015.6|AC005329.1|lncRNA|chr19:1393577:1393606:-	0	-
#Deleted in new
chr19	1393887	1394357	ENSG00000248015.6|AC005329.1|lncRNA|chr19:1393887:1394357:-	0	-
#Deleted in new
chr19	13939896	13940015	ENSG00000132000.11|PODNL1|pc|chr19:13939896:13940015:-	0	-
#Partially deleted in new
chr19	1394417	1395589	ENSG00000115286.19|NDUFS7|pc|chr19:1394417:1395589:+	0	+
#Deleted in new
chr19	1394803	1394867	ENSG00000248015.6|AC005329.1|lncRNA|chr19:1394803:1394867:-	0	-
#Deleted in new
chr19	1394803	1394878	ENSG00000248015.6|AC005329.1|lncRNA|chr19:1394803:1394878:-	0	-
#Partially deleted in new
chr19	1394803	1396467	ENSG00000248015.6|AC005329.1|lncRNA|chr19:1394803:1396467:-	0	-
#Deleted in new
chr19	13949287	13949630	ENSG00000132000.11|PODNL1|pc|chr19:13949287:13949630:-	0	-
#Partially deleted in new
chr19	1397810	1399026	ENSG00000130005.12|GAMT|pc|chr19:1397810:1399026:-	0	-
#Deleted in new
chr19	1398599	1398747	ENSG00000130005.12|GAMT|pc|chr19:1398599:1398747:-	0	-
#Deleted in new
chr19	13998117	13998317	ENSG00000132005.8|RFX1|pc|chr19:13998117:13998317:-	0	-
#Deleted in new
chr19	13998167	13998317	ENSG00000132005.8|RFX1|pc|chr19:13998167:13998317:-	0	-
#Deleted in new
chr19	14030244	14030356	ENSG00000171136.6|RLN3|pc|chr19:14030244:14030356:+	0	+
#Deleted in new
chr19	14031747	14031972	ENSG00000104998.3|IL27RA|pc|chr19:14031747:14031972:+	0	+
#Partially deleted in new
chr19	14052095	14053216	ENSG00000104998.3|IL27RA|pc|chr19:14052095:14053216:+	0	+
#Deleted in new
chr19	1409823	1410079	ENSG00000071626.16|DAZAP1|pc|chr19:1409823:1410079:+	0	+
#Deleted in new
chr19	1415739	1415940	ENSG00000071626.16|DAZAP1|pc|chr19:1415739:1415940:+	0	+
#Partially deleted in new
chr19	1415969	1417540	ENSG00000071626.16|DAZAP1|pc|chr19:1415969:1417540:+	0	+
#Deleted in new
chr1	914170	914444	ENSG00000241180.1|AL645608.5|lncRNA|chr1:914170:914444:+	0	+
#Deleted in new
chr19	14171125	14171267	ENSG00000267169.1|AC022098.1|lncRNA|chr19:14171125:14171267:+	0	+
#Deleted in new
chr19	14254188	14254431	ENSG00000267723.1|AC011509.2|lncRNA|chr19:14254188:14254431:-	0	-
#Deleted in new
chr19	14267806	14267913	ENSG00000267406.1|AC011509.1|lncRNA|chr19:14267806:14267913:-	0	-
#Deleted in new
chr19	14269320	14269377	ENSG00000267406.1|AC011509.1|lncRNA|chr19:14269320:14269377:-	0	-
#Deleted in new
chr19	14279803	14279895	ENSG00000267723.1|AC011509.2|lncRNA|chr19:14279803:14279895:-	0	-
#Deleted in new
chr19	14291626	14291716	ENSG00000267723.1|AC011509.2|lncRNA|chr19:14291626:14291716:-	0	-
#Deleted in new
chr19	14305457	14305675	ENSG00000266913.1|LINC01841|lncRNA|chr19:14305457:14305675:-	0	-
#Deleted in new
chr19	14320239	14320351	ENSG00000266913.1|LINC01841|lncRNA|chr19:14320239:14320351:-	0	-
#Deleted in new
chr19	14325307	14325431	ENSG00000266913.1|LINC01841|lncRNA|chr19:14325307:14325431:-	0	-
#Deleted in new
chr19	14325351	14325431	ENSG00000266913.1|LINC01841|lncRNA|chr19:14325351:14325431:-	0	-
#Deleted in new
chr19	14333742	14334019	ENSG00000267147.2|LINC01842|lncRNA|chr19:14333742:14334019:+	0	+
#Deleted in new
chr19	1433738	1433827	ENSG00000071626.16|DAZAP1|pc|chr19:1433738:1433827:+	0	+
#Deleted in new
chr19	14347314	14347409	ENSG00000266913.1|LINC01841|lncRNA|chr19:14347314:14347409:-	0	-
#Deleted in new
chr19	14363871	14363990	ENSG00000266913.1|LINC01841|lncRNA|chr19:14363871:14363990:-	0	-
#Deleted in new
chr19	14366866	14366960	ENSG00000266913.1|LINC01841|lncRNA|chr19:14366866:14366960:-	0	-
#Deleted in new
chr19	14369942	14370196	ENSG00000266913.1|LINC01841|lncRNA|chr19:14369942:14370196:-	0	-
#Deleted in new
chr19	14380500	14380616	ENSG00000123146.19|ADGRE5|pc|chr19:14380500:14380616:+	0	+
#Partially deleted in new
chr19	1438806	1440253	ENSG00000115268.9|RPS15|pc|chr19:1438806:1440253:+	0	+
#Deleted in new
chr19	14391390	14391492	ENSG00000123146.19|ADGRE5|pc|chr19:14391390:14391492:+	0	+
#Deleted in new
chr19	1439605	1439826	ENSG00000115268.9|RPS15|pc|chr19:1439605:1439826:+	0	+
#Deleted in new
chr19	1439715	1439826	ENSG00000115268.9|RPS15|pc|chr19:1439715:1439826:+	0	+
#Deleted in new
chr19	14405378	14405605	ENSG00000123146.19|ADGRE5|pc|chr19:14405378:14405605:+	0	+
#Deleted in new
chr19	1440838	1441938	ENSG00000268798.1|AC027307.3|lncRNA|chr19:1440838:1441938:+	0	+
#Deleted in new
chr19	14415947	14415988	ENSG00000123136.14|DDX39A|pc|chr19:14415947:14415988:-	0	-
#Deleted in new
chr19	14416268	14416405	ENSG00000123136.14|DDX39A|pc|chr19:14416268:14416405:-	0	-
#Partially deleted in new
chr19	14418928	14419062	ENSG00000123136.14|DDX39A|pc|chr19:14418928:14419062:-	0	-
#Partially deleted in new
chr19	14458400	14458928	ENSG00000267474.1|AC008569.2|lncRNA|chr19:14458400:14458928:+	0	+
#Deleted in new
chr19	14459005	14459366	ENSG00000267474.1|AC008569.2|lncRNA|chr19:14459005:14459366:+	0	+
#Deleted in new
chr19	14479817	14479857	ENSG00000123159.15|GIPC1|pc|chr19:14479817:14479857:-	0	-
#Deleted in new
chr19	14483330	14483445	ENSG00000123159.15|GIPC1|pc|chr19:14483330:14483445:-	0	-
#Deleted in new
chr19	14483488	14483579	ENSG00000123159.15|GIPC1|pc|chr19:14483488:14483579:-	0	-
#Deleted in new
chr19	14491655	14491743	ENSG00000123159.15|GIPC1|pc|chr19:14491655:14491743:-	0	-
#Deleted in new
chr19	14492856	14492912	ENSG00000123159.15|GIPC1|pc|chr19:14492856:14492912:-	0	-
#Deleted in new
chr19	14496036	14496052	ENSG00000123159.15|GIPC1|pc|chr19:14496036:14496052:-	0	-
#Deleted in new
chr19	14496036	14496132	ENSG00000123159.15|GIPC1|pc|chr19:14496036:14496132:-	0	-
#Deleted in new
chr19	14496036	14496149	ENSG00000123159.15|GIPC1|pc|chr19:14496036:14496149:-	0	-
#Deleted in new
chr19	14517084	14517384	ENSG00000099797.13|TECR|pc|chr19:14517084:14517384:+	0	+
#Deleted in new
chr19	14517478	14517569	ENSG00000132002.7|DNAJB1|pc|chr19:14517478:14517569:-	0	-
#Partially deleted in new
chr19	14517590	14517833	ENSG00000132002.7|DNAJB1|pc|chr19:14517590:14517833:-	0	-
#Deleted in new
chr19	14527366	14527810	ENSG00000132002.7|DNAJB1|pc|chr19:14527366:14527810:-	0	-
#Deleted in new
chr19	14527686	14527810	ENSG00000132002.7|DNAJB1|pc|chr19:14527686:14527810:-	0	-
#Deleted in new
chr19	14527725	14527810	ENSG00000132002.7|DNAJB1|pc|chr19:14527725:14527810:-	0	-
#Deleted in new
chr19	14529124	14529193	ENSG00000132002.7|DNAJB1|pc|chr19:14529124:14529193:-	0	-
#Deleted in new
chr19	14529209	14529253	ENSG00000132002.7|DNAJB1|pc|chr19:14529209:14529253:-	0	-
#Deleted in new
chr19	14529209	14529308	ENSG00000132002.7|DNAJB1|pc|chr19:14529209:14529308:-	0	-
#Partially deleted in new
chr19	14529209	14529322	ENSG00000132002.7|DNAJB1|pc|chr19:14529209:14529322:-	0	-
#Deleted in new
chr19	14529221	14529251	ENSG00000132002.7|DNAJB1|pc|chr19:14529221:14529251:-	0	-
#Deleted in new
chr19	14529221	14529300	ENSG00000132002.7|DNAJB1|pc|chr19:14529221:14529300:-	0	-
#Deleted in new
chr19	14529221	14529308	ENSG00000132002.7|DNAJB1|pc|chr19:14529221:14529308:-	0	-
#Deleted in new
chr19	14536664	14536694	ENSG00000099797.13|TECR|pc|chr19:14536664:14536694:+	0	+
#Deleted in new
chr19	14545113	14545180	ENSG00000099797.13|TECR|pc|chr19:14545113:14545180:+	0	+
#Deleted in new
chr19	14545723	14545888	ENSG00000099797.13|TECR|pc|chr19:14545723:14545888:+	0	+
#Deleted in new
chr19	14545758	14545888	ENSG00000099797.13|TECR|pc|chr19:14545758:14545888:+	0	+
#Partially deleted in new
chr19	1457669	1458580	ENSG00000267317.2|AC027307.2|lncRNA|chr19:1457669:1458580:-	0	-
#Deleted in new
chr19	14583083	14583203	ENSG00000187912.11|CLEC17A|pc|chr19:14583083:14583203:+	0	+
#Deleted in new
chr19	14583122	14583203	ENSG00000187912.11|CLEC17A|pc|chr19:14583122:14583203:+	0	+
#Deleted in new
chr19	14583356	14583434	ENSG00000187912.11|CLEC17A|pc|chr19:14583356:14583434:+	0	+
#Deleted in new
chr19	14587613	14587691	ENSG00000187912.11|CLEC17A|pc|chr19:14587613:14587691:+	0	+
#Deleted in new
chr19	14592280	14592358	ENSG00000187912.11|CLEC17A|pc|chr19:14592280:14592358:+	0	+
#Deleted in new
chr19	14594516	14594549	ENSG00000187912.11|CLEC17A|pc|chr19:14594516:14594549:+	0	+
#Deleted in new
chr19	14594631	14594682	ENSG00000187912.11|CLEC17A|pc|chr19:14594631:14594682:+	0	+
#Deleted in new
chr19	14594758	14594800	ENSG00000187912.11|CLEC17A|pc|chr19:14594758:14594800:+	0	+
#Deleted in new
chr19	14595273	14595315	ENSG00000187912.11|CLEC17A|pc|chr19:14595273:14595315:+	0	+
#Deleted in new
chr19	14596875	14597013	ENSG00000187912.11|CLEC17A|pc|chr19:14596875:14597013:+	0	+
#Deleted in new
chr19	14597098	14597161	ENSG00000187912.11|CLEC17A|pc|chr19:14597098:14597161:+	0	+
#Deleted in new
chr19	14599653	14599812	ENSG00000187912.11|CLEC17A|pc|chr19:14599653:14599812:+	0	+
#Deleted in new
chr19	14599716	14599812	ENSG00000187912.11|CLEC17A|pc|chr19:14599716:14599812:+	0	+
#Deleted in new
chr19	14600030	14600182	ENSG00000187912.11|CLEC17A|pc|chr19:14600030:14600182:+	0	+
#Deleted in new
chr19	14606992	14607102	ENSG00000187912.11|CLEC17A|pc|chr19:14606992:14607102:+	0	+
#Deleted in new
chr19	14610063	14610420	ENSG00000187912.11|CLEC17A|pc|chr19:14610063:14610420:+	0	+
#Deleted in new
chr19	14610063	14611157	ENSG00000187912.11|CLEC17A|pc|chr19:14610063:14611157:+	0	+
#Partially deleted in new
chr19	1461142	1461824	ENSG00000119559.15|C19orf25|pc|chr19:1461142:1461824:-	0	-
#Deleted in new
chr19	14619116	14619471	ENSG00000131355.14|ADGRE3|pc|chr19:14619116:14619471:-	0	-
#Deleted in new
chr19	14619235	14619471	ENSG00000131355.14|ADGRE3|pc|chr19:14619235:14619471:-	0	-
#Deleted in new
chr19	14619238	14619471	ENSG00000131355.14|ADGRE3|pc|chr19:14619238:14619471:-	0	-
#Deleted in new
chr19	14625491	14625599	ENSG00000131355.14|ADGRE3|pc|chr19:14625491:14625599:-	0	-
#Deleted in new
chr19	14651084	14651204	ENSG00000131355.14|ADGRE3|pc|chr19:14651084:14651204:-	0	-
#Deleted in new
chr19	14654981	14655165	ENSG00000131355.14|ADGRE3|pc|chr19:14654981:14655165:-	0	-
#Deleted in new
chr19	14658479	14658550	ENSG00000131355.14|ADGRE3|pc|chr19:14658479:14658550:-	0	-
#Deleted in new
chr19	14658512	14658550	ENSG00000131355.14|ADGRE3|pc|chr19:14658512:14658550:-	0	-
#Deleted in new
chr19	14661962	14662118	ENSG00000131355.14|ADGRE3|pc|chr19:14661962:14662118:-	0	-
#Deleted in new
chr19	14663417	14663540	ENSG00000131355.14|ADGRE3|pc|chr19:14663417:14663540:-	0	-
#Deleted in new
chr19	14668619	14668852	ENSG00000131355.14|ADGRE3|pc|chr19:14668619:14668852:-	0	-
#Deleted in new
chr19	14668801	14668852	ENSG00000131355.14|ADGRE3|pc|chr19:14668801:14668852:-	0	-
#Deleted in new
chr19	14674745	14674844	ENSG00000131355.14|ADGRE3|pc|chr19:14674745:14674844:-	0	-
#Deleted in new
chr19	14674745	14674871	ENSG00000131355.14|ADGRE3|pc|chr19:14674745:14674871:-	0	-
#Deleted in new
chr19	14674745	14674918	ENSG00000131355.14|ADGRE3|pc|chr19:14674745:14674918:-	0	-
#Deleted in new
chr19	14674745	14674998	ENSG00000131355.14|ADGRE3|pc|chr19:14674745:14674998:-	0	-
#Deleted in new
chr19	14689800	14689920	ENSG00000160961.11|ZNF333|pc|chr19:14689800:14689920:+	0	+
#Deleted in new
chr19	14689908	14690027	ENSG00000131355.14|ADGRE3|pc|chr19:14689908:14690027:-	0	-
#Deleted in new
chr19	14690048	14690150	ENSG00000160961.11|ZNF333|pc|chr19:14690048:14690150:+	0	+
#Deleted in new
chr19	14690054	14690150	ENSG00000160961.11|ZNF333|pc|chr19:14690054:14690150:+	0	+
#Deleted in new
chr19	14690068	14690150	ENSG00000160961.11|ZNF333|pc|chr19:14690068:14690150:+	0	+
#Deleted in new
chr19	14690073	14690150	ENSG00000160961.11|ZNF333|pc|chr19:14690073:14690150:+	0	+
#Deleted in new
chr19	14690098	14690150	ENSG00000160961.11|ZNF333|pc|chr19:14690098:14690150:+	0	+
#Deleted in new
chr19	14690100	14690150	ENSG00000160961.11|ZNF333|pc|chr19:14690100:14690150:+	0	+
#Deleted in new
chr19	14690105	14690150	ENSG00000160961.11|ZNF333|pc|chr19:14690105:14690150:+	0	+
#Deleted in new
chr19	14693450	14693494	ENSG00000160961.11|ZNF333|pc|chr19:14693450:14693494:+	0	+
#Deleted in new
chr19	14695009	14695133	ENSG00000160961.11|ZNF333|pc|chr19:14695009:14695133:+	0	+
#Deleted in new
chr19	14695565	14695661	ENSG00000160961.11|ZNF333|pc|chr19:14695565:14695661:+	0	+
#Deleted in new
chr19	14699198	14699281	ENSG00000160961.11|ZNF333|pc|chr19:14699198:14699281:+	0	+
#Deleted in new
chr19	14699198	14699411	ENSG00000160961.11|ZNF333|pc|chr19:14699198:14699411:+	0	+
#Deleted in new
chr19	14700205	14700355	ENSG00000160961.11|ZNF333|pc|chr19:14700205:14700355:+	0	+
#Deleted in new
chr19	14701583	14701897	ENSG00000160961.11|ZNF333|pc|chr19:14701583:14701897:+	0	+
#Deleted in new
chr19	14705053	14705170	ENSG00000160961.11|ZNF333|pc|chr19:14705053:14705170:+	0	+
#Deleted in new
chr19	14706090	14707262	ENSG00000160961.11|ZNF333|pc|chr19:14706090:14707262:+	0	+
#Deleted in new
chr19	14706685	14706773	ENSG00000160961.11|ZNF333|pc|chr19:14706685:14706773:+	0	+
#Deleted in new
chr19	14707916	14707965	ENSG00000160961.11|ZNF333|pc|chr19:14707916:14707965:+	0	+
#Deleted in new
chr19	14707993	14709250	ENSG00000160961.11|ZNF333|pc|chr19:14707993:14709250:+	0	+
#Deleted in new
chr19	14708327	14709220	ENSG00000160961.11|ZNF333|pc|chr19:14708327:14709220:+	0	+
#Deleted in new
chr19	14714737	14715470	ENSG00000160961.11|ZNF333|pc|chr19:14714737:14715470:+	0	+
#Deleted in new
chr19	14715381	14715470	ENSG00000160961.11|ZNF333|pc|chr19:14715381:14715470:+	0	+
#Partially deleted in new
chr19	14716993	14717733	ENSG00000160961.11|ZNF333|pc|chr19:14716993:14717733:+	0	+
#Deleted in new
chr19	14717656	14717733	ENSG00000160961.11|ZNF333|pc|chr19:14717656:14717733:+	0	+
#Deleted in new
chr19	14718227	14718243	ENSG00000160961.11|ZNF333|pc|chr19:14718227:14718243:+	0	+
#Partially deleted in new
chr19	14718227	14721908	ENSG00000160961.11|ZNF333|pc|chr19:14718227:14721908:+	0	+
#Deleted in new
chr19	14731174	14733746	ENSG00000160961.11|ZNF333|pc|chr19:14731174:14733746:+	0	+
#Partially deleted in new
chr19	1473200	1475258	ENSG00000119559.15|C19orf25|pc|chr19:1473200:1475258:-	0	-
#Partially deleted in new
chr19	1473203	1475054	ENSG00000119559.15|C19orf25|pc|chr19:1473203:1475054:-	0	-
#Deleted in new
chr19	14732392	14736244	ENSG00000127507.17|ADGRE2|pc|chr19:14732392:14736244:-	0	-
#Deleted in new
chr19	14735575	14736244	ENSG00000127507.17|ADGRE2|pc|chr19:14735575:14736244:-	0	-
#Deleted in new
chr19	14736078	14736244	ENSG00000127507.17|ADGRE2|pc|chr19:14736078:14736244:-	0	-
#Deleted in new
chr19	14736106	14736244	ENSG00000127507.17|ADGRE2|pc|chr19:14736106:14736244:-	0	-
#Deleted in new
chr19	14736235	14736244	ENSG00000127507.17|ADGRE2|pc|chr19:14736235:14736244:-	0	-
#Partially deleted in new
chr19	1473947	1475258	ENSG00000119559.15|C19orf25|pc|chr19:1473947:1475258:-	0	-
#Deleted in new
chr19	14741474	14742086	ENSG00000127507.17|ADGRE2|pc|chr19:14741474:14742086:-	0	-
#Partially deleted in new
chr19	1474154	1475258	ENSG00000119559.15|C19orf25|pc|chr19:1474154:1475258:-	0	-
#Partially deleted in new
chr19	1474167	1475258	ENSG00000119559.15|C19orf25|pc|chr19:1474167:1475258:-	0	-
#Partially deleted in new
chr19	1474171	1476485	ENSG00000119559.15|C19orf25|pc|chr19:1474171:1476485:-	0	-
#Partially deleted in new
chr19	1474173	1475258	ENSG00000119559.15|C19orf25|pc|chr19:1474173:1475258:-	0	-
#Partially deleted in new
chr19	1474185	1475514	ENSG00000119559.15|C19orf25|pc|chr19:1474185:1475514:-	0	-
#Deleted in new
chr19	14743419	14743530	ENSG00000127507.17|ADGRE2|pc|chr19:14743419:14743530:-	0	-
#Partially deleted in new
chr19	1474478	1475239	ENSG00000119559.15|C19orf25|pc|chr19:1474478:1475239:-	0	-
#Deleted in new
chr19	14755653	14755844	ENSG00000127507.17|ADGRE2|pc|chr19:14755653:14755844:-	0	-
#Deleted in new
chr19	14755653	14755877	ENSG00000127507.17|ADGRE2|pc|chr19:14755653:14755877:-	0	-
#Deleted in new
chr19	1475903	1476294	ENSG00000119559.15|C19orf25|pc|chr19:1475903:1476294:-	0	-
#Deleted in new
chr19	14768790	14768934	ENSG00000127507.17|ADGRE2|pc|chr19:14768790:14768934:-	0	-
#Deleted in new
chr19	14778256	14778537	ENSG00000127507.17|ADGRE2|pc|chr19:14778256:14778537:-	0	-
#Deleted in new
chr19	14778256	14778541	ENSG00000127507.17|ADGRE2|pc|chr19:14778256:14778541:-	0	-
#Partially deleted in new
chr19	14789259	14792592	ENSG00000127530.3|OR7C1|pc|chr19:14789259:14792592:-	0	-
#Split in new
chr19	14789259	14800149	ENSG00000127530.3|OR7C1|pc|chr19:14789259:14800149:-	0	-
#Partially deleted in new
chr19	1479162	1479194	ENSG00000119559.15|C19orf25|pc|chr19:1479162:1479194:-	0	-
#Partially deleted in new
chr19	1479162	1479556	ENSG00000119559.15|C19orf25|pc|chr19:1479162:1479556:-	0	-
#Partially deleted in new
chr19	14800255	14800444	ENSG00000127530.3|OR7C1|pc|chr19:14800255:14800444:-	0	-
#Deleted in new
chr19	14800532	14800764	ENSG00000127530.3|OR7C1|pc|chr19:14800532:14800764:-	0	-
#Partially deleted in new
chr1	9148010	9151835	ENSG00000228526.6|MIR34AHG|lncRNA|chr1:9148010:9151835:-	0	-
#Deleted in new
chr1	914802	914971	ENSG00000241180.1|AL645608.5|lncRNA|chr1:914802:914971:+	0	+
#Deleted in new
chr19	14809805	14809993	ENSG00000127530.3|OR7C1|pc|chr19:14809805:14809993:-	0	-
#Deleted in new
chr19	14821418	14821485	ENSG00000127530.3|OR7C1|pc|chr19:14821418:14821485:-	0	-
#Split in new
chr19	14824250	14828254	ENSG00000188269.9|OR7A5|pc|chr19:14824250:14828254:-	0	-
#Deleted in new
chr19	14881773	14881871	ENSG00000185385.4|OR7A17|pc|chr19:14881773:14881871:-	0	-
#Deleted in new
chr19	14884643	14884761	ENSG00000185385.4|OR7A17|pc|chr19:14884643:14884761:-	0	-
#Deleted in new
chr19	14885940	14886132	ENSG00000185385.4|OR7A17|pc|chr19:14885940:14886132:-	0	-
#Deleted in new
chr19	1489592	1489695	ENSG00000115257.15|PCSK4|pc|chr19:1489592:1489695:-	0	-
#Partially deleted in new
chr19	1495468	1496181	ENSG00000115255.10|REEP6|pc|chr19:1495468:1496181:+	0	+
#Deleted in new
chr19	14977739	14977777	ENSG00000105143.12|SLC1A6|pc|chr19:14977739:14977777:-	0	-
#Partially deleted in new
chr19	1505017	1506316	ENSG00000185761.10|ADAMTSL5|pc|chr19:1505017:1506316:-	0	-
#Deleted in new
chr19	1505040	1505200	ENSG00000185761.10|ADAMTSL5|pc|chr19:1505040:1505200:-	0	-
#Deleted in new
chr19	1505814	1505995	ENSG00000185761.10|ADAMTSL5|pc|chr19:1505814:1505995:-	0	-
#Split in new
chr19	15087052	15092970	ENSG00000094661.3|OR1I1|pc|chr19:15087052:15092970:+	0	+
#Deleted in new
chr19	1508812	1508908	ENSG00000185761.10|ADAMTSL5|pc|chr19:1508812:1508908:-	0	-
#Deleted in new
chr19	1508893	1508963	ENSG00000267092.2|AC027307.1|lncRNA|chr19:1508893:1508963:+	0	+
#Deleted in new
chr19	15125926	15126174	ENSG00000268564.1|AC003956.1|lncRNA|chr19:15125926:15126174:+	0	+
#Deleted in new
chr19	15221014	15221238	ENSG00000269635.1|AC004257.1|lncRNA|chr19:15221014:15221238:-	0	-
#Deleted in new
chr19	15222244	15222297	ENSG00000269635.1|AC004257.1|lncRNA|chr19:15222244:15222297:-	0	-
#Deleted in new
chr19	15275656	15275839	ENSG00000141867.17|BRD4|pc|chr19:15275656:15275839:-	0	-
#Deleted in new
chr19	15346067	15346522	ENSG00000273218.1|AC005776.2|lncRNA|chr19:15346067:15346522:-	0	-
#Deleted in new
chr19	15347103	15348417	ENSG00000273218.1|AC005776.2|lncRNA|chr19:15347103:15348417:-	0	-
#Deleted in new
chr19	15381054	15381194	ENSG00000268189.2|AC005785.1|lncRNA|chr19:15381054:15381194:+	0	+
#Deleted in new
chr19	15381881	15382049	ENSG00000011243.17|AKAP8L|pc|chr19:15381881:15382049:-	0	-
#Deleted in new
chr19	15383201	15383832	ENSG00000279203.1|AC005785.2|lncRNA|chr19:15383201:15383832:-	0	-
#Deleted in new
chr19	15498930	15498956	ENSG00000161031.12|PGLYRP2|pc|chr19:15498930:15498956:-	0	-
#Deleted in new
chr19	15523692	15523799	ENSG00000171954.12|CYP4F22|pc|chr19:15523692:15523799:+	0	+
#Deleted in new
chr19	15614162	15614553	ENSG00000266951.2|AC093072.1|lncRNA|chr19:15614162:15614553:-	0	-
#Duplicated in new
chr19	15617999	15619762	ENSG00000186526.12|CYP4F8|pc|chr19:15617999:15619762:+	0	+
#Duplicated in new
chr19	15621675	15622340	ENSG00000186526.12|CYP4F8|pc|chr19:15621675:15622340:+	0	+
#Partially deleted in new
chr19	15629192	15630638	ENSG00000186526.12|CYP4F8|pc|chr19:15629192:15630638:+	0	+
#Duplicated in new
chr19	15645718	15645863	ENSG00000186529.15|CYP4F3|pc|chr19:15645718:15645863:+	0	+
#Partially deleted in new
chr19	15659219	15660126	ENSG00000186529.15|CYP4F3|pc|chr19:15659219:15660126:+	0	+
#Partially deleted in new
chr19	15659219	15660758	ENSG00000186529.15|CYP4F3|pc|chr19:15659219:15660758:+	0	+
#Partially deleted in new
chr19	15659219	15662825	ENSG00000186529.15|CYP4F3|pc|chr19:15659219:15662825:+	0	+
#Deleted in new
chr19	15660488	15660767	ENSG00000186529.15|CYP4F3|pc|chr19:15660488:15660767:+	0	+
#Deleted in new
chr19	15661197	15661293	ENSG00000186529.15|CYP4F3|pc|chr19:15661197:15661293:+	0	+
#Partially deleted in new
chr19	1573595	1578158	ENSG00000071655.17|MBD3|pc|chr19:1573595:1578158:-	0	-
#Deleted in new
chr19	15737984	15738051	ENSG00000171936.2|OR10H3|pc|chr19:15737984:15738051:+	0	+
#Deleted in new
chr1	915749	915976	ENSG00000272438.1|AL645608.7|lncRNA|chr1:915749:915976:+	0	+
#Partially deleted in new
chr19	1576639	1578158	ENSG00000071655.17|MBD3|pc|chr19:1576639:1578158:-	0	-
#Partially deleted in new
chr19	1576639	1578538	ENSG00000071655.17|MBD3|pc|chr19:1576639:1578538:-	0	-
#Partially deleted in new
chr19	1576677	1578158	ENSG00000071655.17|MBD3|pc|chr19:1576677:1578158:-	0	-
#Deleted in new
chr19	1576938	1577086	ENSG00000279009.1|AC005943.2|lncRNA|chr19:1576938:1577086:+	0	+
#Deleted in new
chr19	15808724	15808841	ENSG00000186723.4|OR10H1|pc|chr19:15808724:15808841:-	0	-
#Partially deleted in new
chr19	1581091	1581737	ENSG00000071655.17|MBD3|pc|chr19:1581091:1581737:-	0	-
#Partially deleted in new
chr19	15812229	15812878	ENSG00000186723.4|OR10H1|pc|chr19:15812229:15812878:-	0	-
#Deleted in new
chr19	15827044	15827224	ENSG00000267308.1|LINC01764|lncRNA|chr19:15827044:15827224:-	0	-
#Deleted in new
chr19	15828960	15829338	ENSG00000214049.6|UCA1|lncRNA|chr19:15828960:15829338:+	0	+
#Deleted in new
chr19	15831254	15831356	ENSG00000214049.6|UCA1|lncRNA|chr19:15831254:15831356:+	0	+
#Deleted in new
chr19	1583252	1583380	ENSG00000071655.17|MBD3|pc|chr19:1583252:1583380:-	0	-
#Deleted in new
chr19	15834501	15836320	ENSG00000214049.6|UCA1|lncRNA|chr19:15834501:15836320:+	0	+
#Deleted in new
chr19	15834810	15835114	ENSG00000214049.6|UCA1|lncRNA|chr19:15834810:15835114:+	0	+
#Deleted in new
chr19	15834881	15835114	ENSG00000214049.6|UCA1|lncRNA|chr19:15834881:15835114:+	0	+
#Deleted in new
chr19	15835105	15835267	ENSG00000267308.1|LINC01764|lncRNA|chr19:15835105:15835267:-	0	-
#Deleted in new
chr19	15835217	15835280	ENSG00000214049.6|UCA1|lncRNA|chr19:15835217:15835280:+	0	+
#Deleted in new
chr19	15835217	15835420	ENSG00000214049.6|UCA1|lncRNA|chr19:15835217:15835420:+	0	+
#Deleted in new
chr19	15835526	15835787	ENSG00000267308.1|LINC01764|lncRNA|chr19:15835526:15835787:-	0	-
#Deleted in new
chr19	15835635	15835853	ENSG00000267308.1|LINC01764|lncRNA|chr19:15835635:15835853:-	0	-
#Deleted in new
chr19	15835753	15835819	ENSG00000214049.6|UCA1|lncRNA|chr19:15835753:15835819:+	0	+
#Deleted in new
chr19	1585904	1586362	ENSG00000071655.17|MBD3|pc|chr19:1585904:1586362:-	0	-
#Partially deleted in new
chr19	15878022	15878936	ENSG00000186115.12|CYP4F2|pc|chr19:15878022:15878936:-	0	-
#Partially deleted in new
chr19	15878299	15878936	ENSG00000186115.12|CYP4F2|pc|chr19:15878299:15878936:-	0	-
#Deleted in new
chr19	15904555	15907234	ENSG00000279717.1|AC005336.3|lncRNA|chr19:15904555:15907234:+	0	+
#Partially deleted in new
chr19	15912366	15913909	ENSG00000171903.16|CYP4F11|pc|chr19:15912366:15913909:-	0	-
#Partially deleted in new
chr19	15912369	15913909	ENSG00000171903.16|CYP4F11|pc|chr19:15912369:15913909:-	0	-
#Partially deleted in new
chr19	15912572	15913909	ENSG00000171903.16|CYP4F11|pc|chr19:15912572:15913909:-	0	-
#Duplicated in new
chr19	15927429	15928111	ENSG00000171903.16|CYP4F11|pc|chr19:15927429:15928111:-	0	-
#Deleted in new
chr19	15944298	15944378	ENSG00000176231.2|OR10H4|pc|chr19:15944298:15944378:+	0	+
#Deleted in new
chr19	15945581	15945695	ENSG00000176231.2|OR10H4|pc|chr19:15945581:15945695:+	0	+
#Deleted in new
chr19	1597171	1598215	ENSG00000127540.11|UQCR11|pc|chr19:1597171:1598215:-	0	-
#Deleted in new
chr19	1598048	1598215	ENSG00000127540.11|UQCR11|pc|chr19:1598048:1598215:-	0	-
#Deleted in new
chr19	1598048	1598326	ENSG00000127540.11|UQCR11|pc|chr19:1598048:1598326:-	0	-
#Partially deleted in new
chr19	1598921	1599560	ENSG00000127540.11|UQCR11|pc|chr19:1598921:1599560:-	0	-
#Deleted in new
chr19	16015286	16015359	ENSG00000205396.11|LINC00661|lncRNA|chr19:16015286:16015359:+	0	+
#Deleted in new
chr19	16015633	16015789	ENSG00000205396.11|LINC00661|lncRNA|chr19:16015633:16015789:+	0	+
#Deleted in new
chr19	16016904	16017201	ENSG00000205396.11|LINC00661|lncRNA|chr19:16016904:16017201:+	0	+
#Deleted in new
chr19	16016970	16017201	ENSG00000205396.11|LINC00661|lncRNA|chr19:16016970:16017201:+	0	+
#Deleted in new
chr19	16018540	16018612	ENSG00000205396.11|LINC00661|lncRNA|chr19:16018540:16018612:+	0	+
#Deleted in new
chr19	16018540	16018755	ENSG00000205396.11|LINC00661|lncRNA|chr19:16018540:16018755:+	0	+
#Deleted in new
chr19	16018785	16018953	ENSG00000205396.11|LINC00661|lncRNA|chr19:16018785:16018953:+	0	+
#Deleted in new
chr19	16019718	16020290	ENSG00000280412.1|AC004790.2|lncRNA|chr19:16019718:16020290:+	0	+
#Deleted in new
chr19	1602036	1602129	ENSG00000127540.11|UQCR11|pc|chr19:1602036:1602129:-	0	-
#Deleted in new
chr19	16020587	16020627	ENSG00000205396.11|LINC00661|lncRNA|chr19:16020587:16020627:+	0	+
#Deleted in new
chr19	16021081	16021162	ENSG00000205396.11|LINC00661|lncRNA|chr19:16021081:16021162:+	0	+
#Deleted in new
chr19	16021887	16022064	ENSG00000205396.11|LINC00661|lncRNA|chr19:16021887:16022064:+	0	+
#Deleted in new
chr19	16021925	16022064	ENSG00000205396.11|LINC00661|lncRNA|chr19:16021925:16022064:+	0	+
#Deleted in new
chr19	16021988	16022064	ENSG00000205396.11|LINC00661|lncRNA|chr19:16021988:16022064:+	0	+
#Deleted in new
chr19	16022545	16022588	ENSG00000205396.11|LINC00661|lncRNA|chr19:16022545:16022588:+	0	+
#Deleted in new
chr19	16022627	16022702	ENSG00000205396.11|LINC00661|lncRNA|chr19:16022627:16022702:+	0	+
#Deleted in new
chr19	16022657	16022702	ENSG00000205396.11|LINC00661|lncRNA|chr19:16022657:16022702:+	0	+
#Deleted in new
chr19	16022679	16022702	ENSG00000205396.11|LINC00661|lncRNA|chr19:16022679:16022702:+	0	+
#Deleted in new
chr19	1602293	1602426	ENSG00000127540.11|UQCR11|pc|chr19:1602293:1602426:-	0	-
#Deleted in new
chr19	16023309	16023535	ENSG00000205396.11|LINC00661|lncRNA|chr19:16023309:16023535:+	0	+
#Deleted in new
chr19	16024430	16024677	ENSG00000205396.11|LINC00661|lncRNA|chr19:16024430:16024677:+	0	+
#Deleted in new
chr19	16024452	16024677	ENSG00000205396.11|LINC00661|lncRNA|chr19:16024452:16024677:+	0	+
#Deleted in new
chr19	16025120	16025179	ENSG00000205396.11|LINC00661|lncRNA|chr19:16025120:16025179:+	0	+
#Deleted in new
chr19	16031306	16031404	ENSG00000167459.16|LINC00905|lncRNA|chr19:16031306:16031404:+	0	+
#Deleted in new
chr19	16031629	16031870	ENSG00000167459.16|LINC00905|lncRNA|chr19:16031629:16031870:+	0	+
#Deleted in new
chr19	16031741	16031870	ENSG00000167459.16|LINC00905|lncRNA|chr19:16031741:16031870:+	0	+
#Deleted in new
chr19	16033316	16033353	ENSG00000167459.16|LINC00905|lncRNA|chr19:16033316:16033353:+	0	+
#Deleted in new
chr19	16033653	16033828	ENSG00000167459.16|LINC00905|lncRNA|chr19:16033653:16033828:+	0	+
#Deleted in new
chr19	16034119	16034206	ENSG00000167459.16|LINC00905|lncRNA|chr19:16034119:16034206:+	0	+
#Deleted in new
chr19	16041438	16042111	ENSG00000167459.16|LINC00905|lncRNA|chr19:16041438:16042111:+	0	+
#Deleted in new
chr19	16041438	16042116	ENSG00000167459.16|LINC00905|lncRNA|chr19:16041438:16042116:+	0	+
#Deleted in new
chr19	16065736	16065755	ENSG00000267517.1|LINC01855|lncRNA|chr19:16065736:16065755:+	0	+
#Deleted in new
chr19	16065867	16066036	ENSG00000267517.1|LINC01855|lncRNA|chr19:16065867:16066036:+	0	+
#Deleted in new
chr19	16066104	16066312	ENSG00000267517.1|LINC01855|lncRNA|chr19:16066104:16066312:+	0	+
#Duplicated in new
chr19	16067699	16067962	ENSG00000167460.14|TPM4|pc|chr19:16067699:16067962:+	0	+
#Deleted in new
chr19	16075685	16075709	ENSG00000167460.14|TPM4|pc|chr19:16075685:16075709:+	0	+
#Deleted in new
chr19	16080055	16080442	ENSG00000167460.14|TPM4|pc|chr19:16080055:16080442:+	0	+
#Deleted in new
chr19	16080825	16081343	ENSG00000167460.14|TPM4|pc|chr19:16080825:16081343:+	0	+
#Deleted in new
chr19	16080914	16081075	ENSG00000167460.14|TPM4|pc|chr19:16080914:16081075:+	0	+
#Deleted in new
chr19	16081440	16081542	ENSG00000167460.14|TPM4|pc|chr19:16081440:16081542:+	0	+
#Partially deleted in new
chr19	1609289	1611849	ENSG00000071564.14|TCF3|pc|chr19:1609289:1611849:-	0	-
#Deleted in new
chr19	1609290	1609599	ENSG00000071564.14|TCF3|pc|chr19:1609290:1609599:-	0	-
#Deleted in new
chr19	1609292	1610500	ENSG00000071564.14|TCF3|pc|chr19:1609292:1610500:-	0	-
#Partially deleted in new
chr19	1609292	1611369	ENSG00000071564.14|TCF3|pc|chr19:1609292:1611369:-	0	-
#Partially deleted in new
chr19	1609292	1611849	ENSG00000071564.14|TCF3|pc|chr19:1609292:1611849:-	0	-
#Deleted in new
chr19	16093106	16093132	ENSG00000167460.14|TPM4|pc|chr19:16093106:16093132:+	0	+
#Deleted in new
chr19	1609471	1609599	ENSG00000071564.14|TCF3|pc|chr19:1609471:1609599:-	0	-
#Deleted in new
chr19	16103760	16103973	ENSG00000267373.1|AC008894.1|lncRNA|chr19:16103760:16103973:-	0	-
#Deleted in new
chr19	16104100	16104254	ENSG00000267373.1|AC008894.1|lncRNA|chr19:16104100:16104254:-	0	-
#Deleted in new
chr19	16134027	16134235	ENSG00000196684.12|HSH2D|pc|chr19:16134027:16134235:+	0	+
#Deleted in new
chr19	16139734	16139821	ENSG00000269243.1|AC008894.2|lncRNA|chr19:16139734:16139821:-	0	-
#Deleted in new
chr19	16139734	16139892	ENSG00000269243.1|AC008894.2|lncRNA|chr19:16139734:16139892:-	0	-
#Deleted in new
chr19	16141940	16142093	ENSG00000196684.12|HSH2D|pc|chr19:16141940:16142093:+	0	+
#Deleted in new
chr19	16151446	16151578	ENSG00000196684.12|HSH2D|pc|chr19:16151446:16151578:+	0	+
#Deleted in new
chr19	16155641	16155661	ENSG00000196684.12|HSH2D|pc|chr19:16155641:16155661:+	0	+
#Deleted in new
chr19	16155641	16155763	ENSG00000196684.12|HSH2D|pc|chr19:16155641:16155763:+	0	+
#Partially deleted in new
chr19	16157209	16157248	ENSG00000196684.12|HSH2D|pc|chr19:16157209:16157248:+	0	+
#Partially deleted in new
chr19	16186452	16186649	ENSG00000105058.11|FAM32A|pc|chr19:16186452:16186649:+	0	+
#Deleted in new
chr19	16189321	16189458	ENSG00000267033.1|AC020911.1|lncRNA|chr19:16189321:16189458:-	0	-
#Deleted in new
chr19	16189387	16189511	ENSG00000105058.11|FAM32A|pc|chr19:16189387:16189511:+	0	+
#Deleted in new
chr19	16210359	16210395	ENSG00000072958.8|AP1M1|pc|chr19:16210359:16210395:+	0	+
#Partially deleted in new
chr19	16234412	16234911	ENSG00000072958.8|AP1M1|pc|chr19:16234412:16234911:+	0	+
#Partially deleted in new
chr19	16234412	16235345	ENSG00000072958.8|AP1M1|pc|chr19:16234412:16235345:+	0	+
#Partially deleted in new
chr19	16234412	16245907	ENSG00000072958.8|AP1M1|pc|chr19:16234412:16245907:+	0	+
#Deleted in new
chr19	16235146	16235345	ENSG00000072958.8|AP1M1|pc|chr19:16235146:16235345:+	0	+
#Partially deleted in new
chr19	16292830	16292970	ENSG00000267275.1|AC020911.2|lncRNA|chr19:16292830:16292970:-	0	-
#Deleted in new
chr19	16352461	16353182	ENSG00000277825.1|AC020917.3|lncRNA|chr19:16352461:16353182:-	0	-
#Deleted in new
chr19	16356328	16358327	ENSG00000280332.1|AC020917.4|lncRNA|chr19:16356328:16358327:-	0	-
#Partially deleted in new
chr19	16382988	16384275	ENSG00000127527.13|EPS15L1|pc|chr19:16382988:16384275:-	0	-
#Partially deleted in new
chr19	16434364	16435296	ENSG00000127527.13|EPS15L1|pc|chr19:16434364:16435296:-	0	-
#Partially deleted in new
chr19	16441510	16441981	ENSG00000127527.13|EPS15L1|pc|chr19:16441510:16441981:-	0	-
#Deleted in new
chr19	16443477	16443584	ENSG00000267703.1|AC020917.2|lncRNA|chr19:16443477:16443584:+	0	+
#Deleted in new
chr19	16499473	16499620	ENSG00000105072.8|C19orf44|pc|chr19:16499473:16499620:+	0	+
#Deleted in new
chr19	16526167	16526274	ENSG00000085872.14|CHERP|pc|chr19:16526167:16526274:-	0	-
#Deleted in new
chr19	16542745	16544814	ENSG00000269399.2|AC008764.6|lncRNA|chr19:16542745:16544814:+	0	+
#Partially deleted in new
chr19	16550849	16553909	ENSG00000127526.14|SLC35E1|pc|chr19:16550849:16553909:-	0	-
#Deleted in new
chr19	16551758	16551868	ENSG00000127526.14|SLC35E1|pc|chr19:16551758:16551868:-	0	-
#Deleted in new
chr19	16551772	16551897	ENSG00000268309.1|AC008764.3|lncRNA|chr19:16551772:16551897:+	0	+
#Deleted in new
chr19	16551992	16552328	ENSG00000127526.14|SLC35E1|pc|chr19:16551992:16552328:-	0	-
#Deleted in new
chr19	16552021	16552328	ENSG00000268309.1|AC008764.3|lncRNA|chr19:16552021:16552328:+	0	+
#Deleted in new
chr19	16552049	16552333	ENSG00000127526.14|SLC35E1|pc|chr19:16552049:16552333:-	0	-
#Partially deleted in new
chr19	16555348	16555840	ENSG00000127526.14|SLC35E1|pc|chr19:16555348:16555840:-	0	-
#Deleted in new
chr19	16556922	16557135	ENSG00000127526.14|SLC35E1|pc|chr19:16556922:16557135:-	0	-
#Deleted in new
chr19	16564153	16564255	ENSG00000127526.14|SLC35E1|pc|chr19:16564153:16564255:-	0	-
#Deleted in new
chr19	16565036	16565132	ENSG00000127526.14|SLC35E1|pc|chr19:16565036:16565132:-	0	-
#Partially deleted in new
chr19	16565227	16566657	ENSG00000127526.14|SLC35E1|pc|chr19:16565227:16566657:-	0	-
#Deleted in new
chr19	16565550	16565573	ENSG00000269085.1|AC008764.5|lncRNA|chr19:16565550:16565573:+	0	+
#Deleted in new
chr19	16566163	16566330	ENSG00000269085.1|AC008764.5|lncRNA|chr19:16566163:16566330:+	0	+
#Deleted in new
chr19	16597429	16597453	ENSG00000141979.4|AC008764.1|pc|chr19:16597429:16597453:-	0	-
#Partially deleted in new
chr19	16610373	16612203	ENSG00000279977.1|AC008764.10|lncRNA|chr19:16610373:16612203:-	0	-
#Deleted in new
chr19	16610410	16610437	ENSG00000268087.1|AC008764.2|lncRNA|chr19:16610410:16610437:+	0	+
#Deleted in new
chr19	16630467	16630559	ENSG00000268790.5|AC008764.4|pc|chr19:16630467:16630559:-	0	-
#Deleted in new
chr19	16630742	16631108	ENSG00000269427.1|AC024075.3|lncRNA|chr19:16630742:16631108:+	0	+
#Deleted in new
chr19	16630750	16631192	ENSG00000214046.8|SMIM7|pc|chr19:16630750:16631192:-	0	-
#Deleted in new
chr19	16630750	16631724	ENSG00000214046.8|SMIM7|pc|chr19:16630750:16631724:-	0	-
#Deleted in new
chr19	16630751	16631153	ENSG00000269427.1|AC024075.3|lncRNA|chr19:16630751:16631153:+	0	+
#Deleted in new
chr19	16630996	16631724	ENSG00000214046.8|SMIM7|pc|chr19:16630996:16631724:-	0	-
#Deleted in new
chr19	16631042	16631724	ENSG00000214046.8|SMIM7|pc|chr19:16631042:16631724:-	0	-
#Deleted in new
chr19	16631123	16631724	ENSG00000214046.8|SMIM7|pc|chr19:16631123:16631724:-	0	-
#Deleted in new
chr19	16631308	16631487	ENSG00000214046.8|SMIM7|pc|chr19:16631308:16631487:-	0	-
#Deleted in new
chr19	16631376	16631664	ENSG00000214046.8|SMIM7|pc|chr19:16631376:16631664:-	0	-
#Deleted in new
chr19	16633796	16635269	ENSG00000269044.2|AC024075.2|lncRNA|chr19:16633796:16635269:-	0	-
#Deleted in new
chr19	16636182	16636531	ENSG00000268087.1|AC008764.2|lncRNA|chr19:16636182:16636531:+	0	+
#Deleted in new
chr19	16638863	16638950	ENSG00000269427.1|AC024075.3|lncRNA|chr19:16638863:16638950:+	0	+
#Deleted in new
chr19	16639966	16640166	ENSG00000267904.1|AC024075.1|lncRNA|chr19:16639966:16640166:-	0	-
#Deleted in new
chr19	16640322	16640668	ENSG00000267904.1|AC024075.1|lncRNA|chr19:16640322:16640668:-	0	-
#Deleted in new
chr19	16640914	16641456	ENSG00000214046.8|SMIM7|pc|chr19:16640914:16641456:-	0	-
#Deleted in new
chr19	16643907	16643942	ENSG00000269427.1|AC024075.3|lncRNA|chr19:16643907:16643942:+	0	+
#Split in new
chr19	16644744	16647261	ENSG00000214046.8|SMIM7|pc|chr19:16644744:16647261:-	0	-
#Duplicated in new
chr19	16647006	16647261	ENSG00000214046.8|SMIM7|pc|chr19:16647006:16647261:-	0	-
#Deleted in new
chr19	16652355	16652961	ENSG00000214046.8|SMIM7|pc|chr19:16652355:16652961:-	0	-
#Deleted in new
chr19	16652604	16652961	ENSG00000214046.8|SMIM7|pc|chr19:16652604:16652961:-	0	-
#Deleted in new
chr19	16652697	16652961	ENSG00000214046.8|SMIM7|pc|chr19:16652697:16652961:-	0	-
#Partially deleted in new
chr19	16653679	16654125	ENSG00000214046.8|SMIM7|pc|chr19:16653679:16654125:-	0	-
#Deleted in new
chr19	16655237	16655368	ENSG00000214046.8|SMIM7|pc|chr19:16655237:16655368:-	0	-
#Partially deleted in new
chr19	16688922	16689006	ENSG00000072954.6|TMEM38A|pc|chr19:16688922:16689006:+	0	+
#Deleted in new
chr19	16721394	16721617	ENSG00000188039.13|NWD1|pc|chr19:16721394:16721617:+	0	+
#Deleted in new
chr19	16724365	16724463	ENSG00000188039.13|NWD1|pc|chr19:16724365:16724463:+	0	+
#Deleted in new
chr19	16738225	16738292	ENSG00000188039.13|NWD1|pc|chr19:16738225:16738292:+	0	+
#Deleted in new
chr19	16801425	16801460	ENSG00000269799.1|AC008737.3|lncRNA|chr19:16801425:16801460:+	0	+
#Deleted in new
chr19	16801528	16801714	ENSG00000269799.1|AC008737.3|lncRNA|chr19:16801528:16801714:+	0	+
#Deleted in new
chr19	16844024	16844211	ENSG00000268743.1|AC008737.1|lncRNA|chr19:16844024:16844211:+	0	+
#Deleted in new
chr19	16846289	16846473	ENSG00000268743.1|AC008737.1|lncRNA|chr19:16846289:16846473:+	0	+
#Partially deleted in new
chr19	16854142	16855745	ENSG00000127511.9|SIN3B|pc|chr19:16854142:16855745:+	0	+
#Deleted in new
chr19	16862883	16862979	ENSG00000127511.9|SIN3B|pc|chr19:16862883:16862979:+	0	+
#Deleted in new
chr19	16862883	16863286	ENSG00000127511.9|SIN3B|pc|chr19:16862883:16863286:+	0	+
#Deleted in new
chr19	16863096	16863362	ENSG00000127511.9|SIN3B|pc|chr19:16863096:16863362:+	0	+
#Partially deleted in new
chr19	16863273	16863796	ENSG00000127511.9|SIN3B|pc|chr19:16863273:16863796:+	0	+
#Deleted in new
chr1	916864	921016	ENSG00000223764.2|AL645608.1|lncRNA|chr1:916864:921016:-	0	-
#Deleted in new
chr1	916869	917720	ENSG00000223764.2|AL645608.1|lncRNA|chr1:916869:917720:-	0	-
#Deleted in new
chr19	16872467	16872666	ENSG00000127511.9|SIN3B|pc|chr19:16872467:16872666:+	0	+
#Partially deleted in new
chr19	16876938	16877639	ENSG00000127511.9|SIN3B|pc|chr19:16876938:16877639:+	0	+
#Deleted in new
chr19	16877161	16877335	ENSG00000127511.9|SIN3B|pc|chr19:16877161:16877335:+	0	+
#Deleted in new
chr19	16892946	16893339	ENSG00000160111.12|CPAMD8|pc|chr19:16892946:16893339:-	0	-
#Deleted in new
chr19	16892950	16894437	ENSG00000160111.12|CPAMD8|pc|chr19:16892950:16894437:-	0	-
#Deleted in new
chr19	16892951	16893339	ENSG00000160111.12|CPAMD8|pc|chr19:16892951:16893339:-	0	-
#Deleted in new
chr19	16892953	16896326	ENSG00000160111.12|CPAMD8|pc|chr19:16892953:16896326:-	0	-
#Deleted in new
chr19	16892957	16894437	ENSG00000160111.12|CPAMD8|pc|chr19:16892957:16894437:-	0	-
#Deleted in new
chr19	16893738	16894437	ENSG00000160111.12|CPAMD8|pc|chr19:16893738:16894437:-	0	-
#Deleted in new
chr19	16893807	16894437	ENSG00000160111.12|CPAMD8|pc|chr19:16893807:16894437:-	0	-
#Deleted in new
chr19	16893843	16894437	ENSG00000160111.12|CPAMD8|pc|chr19:16893843:16894437:-	0	-
#Deleted in new
chr19	16894007	16894433	ENSG00000160111.12|CPAMD8|pc|chr19:16894007:16894433:-	0	-
#Deleted in new
chr19	16894082	16894437	ENSG00000160111.12|CPAMD8|pc|chr19:16894082:16894437:-	0	-
#Deleted in new
chr19	16894352	16894437	ENSG00000160111.12|CPAMD8|pc|chr19:16894352:16894437:-	0	-
#Deleted in new
chr19	16895864	16896326	ENSG00000160111.12|CPAMD8|pc|chr19:16895864:16896326:-	0	-
#Deleted in new
chr19	16896038	16896326	ENSG00000160111.12|CPAMD8|pc|chr19:16896038:16896326:-	0	-
#Deleted in new
chr19	16896175	16896215	ENSG00000160111.12|CPAMD8|pc|chr19:16896175:16896215:-	0	-
#Deleted in new
chr19	16896175	16896252	ENSG00000160111.12|CPAMD8|pc|chr19:16896175:16896252:-	0	-
#Deleted in new
chr19	16896175	16896326	ENSG00000160111.12|CPAMD8|pc|chr19:16896175:16896326:-	0	-
#Deleted in new
chr19	16896195	16896321	ENSG00000160111.12|CPAMD8|pc|chr19:16896195:16896321:-	0	-
#Deleted in new
chr19	16896228	16896252	ENSG00000160111.12|CPAMD8|pc|chr19:16896228:16896252:-	0	-
#Deleted in new
chr19	16896455	16896665	ENSG00000160111.12|CPAMD8|pc|chr19:16896455:16896665:-	0	-
#Deleted in new
chr19	16896455	16896893	ENSG00000160111.12|CPAMD8|pc|chr19:16896455:16896893:-	0	-
#Deleted in new
chr19	16896455	16896941	ENSG00000160111.12|CPAMD8|pc|chr19:16896455:16896941:-	0	-
#Deleted in new
chr19	16896472	16896665	ENSG00000160111.12|CPAMD8|pc|chr19:16896472:16896665:-	0	-
#Deleted in new
chr19	16896860	16896923	ENSG00000160111.12|CPAMD8|pc|chr19:16896860:16896923:-	0	-
#Deleted in new
chr19	16896860	16896944	ENSG00000160111.12|CPAMD8|pc|chr19:16896860:16896944:-	0	-
#Deleted in new
chr19	16896860	16896973	ENSG00000160111.12|CPAMD8|pc|chr19:16896860:16896973:-	0	-
#Deleted in new
chr19	16897326	16897392	ENSG00000160111.12|CPAMD8|pc|chr19:16897326:16897392:-	0	-
#Partially deleted in new
chr19	16897690	16897889	ENSG00000160111.12|CPAMD8|pc|chr19:16897690:16897889:-	0	-
#Deleted in new
chr19	16897888	16897994	ENSG00000160111.12|CPAMD8|pc|chr19:16897888:16897994:-	0	-
#Deleted in new
chr19	16897888	16898108	ENSG00000160111.12|CPAMD8|pc|chr19:16897888:16898108:-	0	-
#Deleted in new
chr19	16899474	16899549	ENSG00000160111.12|CPAMD8|pc|chr19:16899474:16899549:-	0	-
#Deleted in new
chr19	16901209	16901297	ENSG00000160111.12|CPAMD8|pc|chr19:16901209:16901297:-	0	-
#Deleted in new
chr19	16902648	16902863	ENSG00000160111.12|CPAMD8|pc|chr19:16902648:16902863:-	0	-
#Deleted in new
chr19	16903560	16903598	ENSG00000160111.12|CPAMD8|pc|chr19:16903560:16903598:-	0	-
#Deleted in new
chr19	16903560	16903623	ENSG00000160111.12|CPAMD8|pc|chr19:16903560:16903623:-	0	-
#Deleted in new
chr19	16903701	16903857	ENSG00000160111.12|CPAMD8|pc|chr19:16903701:16903857:-	0	-
#Deleted in new
chr19	16904465	16904552	ENSG00000160111.12|CPAMD8|pc|chr19:16904465:16904552:-	0	-
#Deleted in new
chr19	16906951	16907117	ENSG00000160111.12|CPAMD8|pc|chr19:16906951:16907117:-	0	-
#Deleted in new
chr19	16928008	16928234	ENSG00000160111.12|CPAMD8|pc|chr19:16928008:16928234:-	0	-
#Deleted in new
chr19	16928941	16929240	ENSG00000160111.12|CPAMD8|pc|chr19:16928941:16929240:-	0	-
#Deleted in new
chr19	16938394	16938446	ENSG00000160111.12|CPAMD8|pc|chr19:16938394:16938446:-	0	-
#Deleted in new
chr19	16945548	16945679	ENSG00000160111.12|CPAMD8|pc|chr19:16945548:16945679:-	0	-
#Deleted in new
chr19	16947073	16947227	ENSG00000160111.12|CPAMD8|pc|chr19:16947073:16947227:-	0	-
#Deleted in new
chr19	16947081	16947227	ENSG00000160111.12|CPAMD8|pc|chr19:16947081:16947227:-	0	-
#Deleted in new
chr19	16957546	16957915	ENSG00000160111.12|CPAMD8|pc|chr19:16957546:16957915:-	0	-
#Deleted in new
chr19	16957852	16957915	ENSG00000160111.12|CPAMD8|pc|chr19:16957852:16957915:-	0	-
#Deleted in new
chr19	16970890	16971033	ENSG00000160111.12|CPAMD8|pc|chr19:16970890:16971033:-	0	-
#Deleted in new
chr19	16970890	16971125	ENSG00000160111.12|CPAMD8|pc|chr19:16970890:16971125:-	0	-
#Deleted in new
chr19	16975086	16975258	ENSG00000160111.12|CPAMD8|pc|chr19:16975086:16975258:-	0	-
#Deleted in new
chr19	16975096	16975258	ENSG00000160111.12|CPAMD8|pc|chr19:16975096:16975258:-	0	-
#Deleted in new
chr19	16976001	16976068	ENSG00000160111.12|CPAMD8|pc|chr19:16976001:16976068:-	0	-
#Deleted in new
chr19	16976001	16976151	ENSG00000160111.12|CPAMD8|pc|chr19:16976001:16976151:-	0	-
#Deleted in new
chr19	16977367	16977540	ENSG00000160111.12|CPAMD8|pc|chr19:16977367:16977540:-	0	-
#Deleted in new
chr19	16980496	16980686	ENSG00000160111.12|CPAMD8|pc|chr19:16980496:16980686:-	0	-
#Deleted in new
chr19	16989642	16989771	ENSG00000160111.12|CPAMD8|pc|chr19:16989642:16989771:-	0	-
#Deleted in new
chr19	16993415	16993586	ENSG00000160111.12|CPAMD8|pc|chr19:16993415:16993586:-	0	-
#Deleted in new
chr19	16997110	16997338	ENSG00000160111.12|CPAMD8|pc|chr19:16997110:16997338:-	0	-
#Deleted in new
chr19	17000205	17000522	ENSG00000160111.12|CPAMD8|pc|chr19:17000205:17000522:-	0	-
#Deleted in new
chr19	17000413	17000522	ENSG00000160111.12|CPAMD8|pc|chr19:17000413:17000522:-	0	-
#Deleted in new
chr19	17002265	17002350	ENSG00000160111.12|CPAMD8|pc|chr19:17002265:17002350:-	0	-
#Deleted in new
chr19	17002265	17002530	ENSG00000160111.12|CPAMD8|pc|chr19:17002265:17002530:-	0	-
#Deleted in new
chr19	17004272	17004386	ENSG00000160111.12|CPAMD8|pc|chr19:17004272:17004386:-	0	-
#Deleted in new
chr19	17008504	17008559	ENSG00000160111.12|CPAMD8|pc|chr19:17008504:17008559:-	0	-
#Deleted in new
chr19	17009188	17009503	ENSG00000268985.1|AC020908.2|lncRNA|chr19:17009188:17009503:+	0	+
#Deleted in new
chr19	17009302	17009320	ENSG00000160111.12|CPAMD8|pc|chr19:17009302:17009320:-	0	-
#Deleted in new
chr19	17011463	17011516	ENSG00000160111.12|CPAMD8|pc|chr19:17011463:17011516:-	0	-
#Deleted in new
chr19	17011591	17011757	ENSG00000160111.12|CPAMD8|pc|chr19:17011591:17011757:-	0	-
#Deleted in new
chr19	17013370	17013460	ENSG00000268985.1|AC020908.2|lncRNA|chr19:17013370:17013460:+	0	+
#Deleted in new
chr19	17020330	17020353	ENSG00000160111.12|CPAMD8|pc|chr19:17020330:17020353:-	0	-
#Deleted in new
chr19	17022029	17022181	ENSG00000160111.12|CPAMD8|pc|chr19:17022029:17022181:-	0	-
#Deleted in new
chr19	17026550	17026815	ENSG00000160111.12|CPAMD8|pc|chr19:17026550:17026815:-	0	-
#Partially deleted in new
chr19	17051682	17053719	ENSG00000131351.14|HAUS8|pc|chr19:17051682:17053719:-	0	-
#Deleted in new
chr19	17051993	17052230	ENSG00000268289.1|AC020908.1|lncRNA|chr19:17051993:17052230:+	0	+
#Deleted in new
chr19	17055044	17055087	ENSG00000268289.1|AC020908.1|lncRNA|chr19:17055044:17055087:+	0	+
#Deleted in new
chr19	17062697	17062779	ENSG00000131351.14|HAUS8|pc|chr19:17062697:17062779:-	0	-
#Partially deleted in new
chr19	17073273	17075200	ENSG00000131351.14|HAUS8|pc|chr19:17073273:17075200:-	0	-
#Partially deleted in new
chr19	17075393	17075613	ENSG00000131351.14|HAUS8|pc|chr19:17075393:17075613:-	0	-
#Partially deleted in new
chr19	17075393	17075625	ENSG00000131351.14|HAUS8|pc|chr19:17075393:17075625:-	0	-
#Deleted in new
chr19	17095417	17095882	ENSG00000269066.1|AC020908.3|lncRNA|chr19:17095417:17095882:-	0	-
#Deleted in new
chr19	17099162	17099307	ENSG00000269066.1|AC020908.3|lncRNA|chr19:17099162:17099307:-	0	-
#Deleted in new
chr19	17103256	17103789	ENSG00000099331.13|MYO9B|pc|chr19:17103256:17103789:+	0	+
#Deleted in new
chr19	17157294	17157390	ENSG00000268056.5|AC020913.1|lncRNA|chr19:17157294:17157390:-	0	-
#Deleted in new
chr19	17157619	17157712	ENSG00000268056.5|AC020913.1|lncRNA|chr19:17157619:17157712:-	0	-
#Deleted in new
chr19	17177510	17177568	ENSG00000269836.1|AC020913.3|lncRNA|chr19:17177510:17177568:-	0	-
#Deleted in new
chr19	17178409	17178476	ENSG00000269836.1|AC020913.3|lncRNA|chr19:17178409:17178476:-	0	-
#Partially deleted in new
chr19	17183828	17184002	ENSG00000099331.13|MYO9B|pc|chr19:17183828:17184002:+	0	+
#Deleted in new
chr19	17207615	17208010	ENSG00000269480.1|AC020913.2|lncRNA|chr19:17207615:17208010:-	0	-
#Deleted in new
chr19	17214459	17214537	ENSG00000099331.13|MYO9B|pc|chr19:17214459:17214537:+	0	+
#Deleted in new
chr19	17217452	17217462	ENSG00000053501.12|USE1|pc|chr19:17217452:17217462:+	0	+
#Deleted in new
chr19	17217452	17217489	ENSG00000053501.12|USE1|pc|chr19:17217452:17217489:+	0	+
#Deleted in new
chr19	17217452	17217617	ENSG00000053501.12|USE1|pc|chr19:17217452:17217617:+	0	+
#Deleted in new
chr19	17217452	17217670	ENSG00000053501.12|USE1|pc|chr19:17217452:17217670:+	0	+
#Partially deleted in new
chr19	17217452	17218826	ENSG00000053501.12|USE1|pc|chr19:17217452:17218826:+	0	+
#Deleted in new
chr19	17226203	17226316	ENSG00000099330.8|OCEL1|pc|chr19:17226203:17226316:+	0	+
#Deleted in new
chr19	17226212	17226353	ENSG00000099330.8|OCEL1|pc|chr19:17226212:17226353:+	0	+
#Deleted in new
chr19	17226221	17226353	ENSG00000099330.8|OCEL1|pc|chr19:17226221:17226353:+	0	+
#Deleted in new
chr19	17226224	17226316	ENSG00000099330.8|OCEL1|pc|chr19:17226224:17226316:+	0	+
#Deleted in new
chr19	17226225	17226316	ENSG00000099330.8|OCEL1|pc|chr19:17226225:17226316:+	0	+
#Deleted in new
chr19	17226242	17226316	ENSG00000099330.8|OCEL1|pc|chr19:17226242:17226316:+	0	+
#Deleted in new
chr19	17226252	17226316	ENSG00000099330.8|OCEL1|pc|chr19:17226252:17226316:+	0	+
#Deleted in new
chr19	17226614	17226869	ENSG00000099330.8|OCEL1|pc|chr19:17226614:17226869:+	0	+
#Deleted in new
chr19	17226692	17226869	ENSG00000099330.8|OCEL1|pc|chr19:17226692:17226869:+	0	+
#Deleted in new
chr19	17226739	17226869	ENSG00000099330.8|OCEL1|pc|chr19:17226739:17226869:+	0	+
#Deleted in new
chr19	17226838	17226869	ENSG00000099330.8|OCEL1|pc|chr19:17226838:17226869:+	0	+
#Partially deleted in new
chr19	17228380	17229213	ENSG00000099330.8|OCEL1|pc|chr19:17228380:17229213:+	0	+
#Deleted in new
chr19	17228410	17228705	ENSG00000099330.8|OCEL1|pc|chr19:17228410:17228705:+	0	+
#Partially deleted in new
chr19	17228430	17229215	ENSG00000099330.8|OCEL1|pc|chr19:17228430:17229215:+	0	+
#Partially deleted in new
chr19	17228945	17229215	ENSG00000099330.8|OCEL1|pc|chr19:17228945:17229215:+	0	+
#Partially deleted in new
chr19	17229008	17229215	ENSG00000099330.8|OCEL1|pc|chr19:17229008:17229215:+	0	+
#Partially deleted in new
chr19	17229008	17229218	ENSG00000099330.8|OCEL1|pc|chr19:17229008:17229218:+	0	+
#Partially deleted in new
chr19	17229008	17229219	ENSG00000099330.8|OCEL1|pc|chr19:17229008:17229219:+	0	+
#Partially deleted in new
chr19	17249175	17250414	ENSG00000130307.11|USHBP1|pc|chr19:17249175:17250414:-	0	-
#Deleted in new
chr19	17258583	17258701	ENSG00000130307.11|USHBP1|pc|chr19:17258583:17258701:-	0	-
#Deleted in new
chr19	17268558	17268664	ENSG00000105393.15|BABAM1|pc|chr19:17268558:17268664:+	0	+
#Deleted in new
chr19	17274412	17274564	ENSG00000130307.11|USHBP1|pc|chr19:17274412:17274564:-	0	-
#Deleted in new
chr19	17277246	17277344	ENSG00000105393.15|BABAM1|pc|chr19:17277246:17277344:+	0	+
#Deleted in new
chr19	17277383	17277479	ENSG00000105393.15|BABAM1|pc|chr19:17277383:17277479:+	0	+
#Duplicated in new
chr19	17279036	17279339	ENSG00000105393.15|BABAM1|pc|chr19:17279036:17279339:+	0	+
#Deleted in new
chr19	17281235	17281249	ENSG00000105393.15|BABAM1|pc|chr19:17281235:17281249:+	0	+
#Deleted in new
chr19	17296195	17296695	ENSG00000269815.1|AC010463.3|lncRNA|chr19:17296195:17296695:-	0	-
#Deleted in new
chr19	17297744	17297959	ENSG00000130312.6|MRPL34|pc|chr19:17297744:17297959:+	0	+
#Deleted in new
chr19	17298241	17298430	ENSG00000130312.6|MRPL34|pc|chr19:17298241:17298430:+	0	+
#Deleted in new
chr19	17298311	17298377	ENSG00000130312.6|MRPL34|pc|chr19:17298311:17298377:+	0	+
#Deleted in new
chr19	17302182	17302232	ENSG00000127220.5|ABHD8|pc|chr19:17302182:17302232:-	0	-
#Partially deleted in new
chr19	17306241	17306782	ENSG00000130312.6|MRPL34|pc|chr19:17306241:17306782:+	0	+
#Partially deleted in new
chr19	17314337	17314732	ENSG00000130311.10|DDA1|pc|chr19:17314337:17314732:+	0	+
#Partially deleted in new
chr19	17319545	17323301	ENSG00000130311.10|DDA1|pc|chr19:17319545:17323301:+	0	+
#Duplicated in new
chr19	17341477	17341968	ENSG00000130299.16|GTPBP3|pc|chr19:17341477:17341968:+	0	+
#Split in new
chr19	17341477	17342723	ENSG00000130299.16|GTPBP3|pc|chr19:17341477:17342723:+	0	+
#Split in new
chr19	17341477	17342735	ENSG00000130299.16|GTPBP3|pc|chr19:17341477:17342735:+	0	+
#Deleted in new
chr19	17342155	17342730	ENSG00000130299.16|GTPBP3|pc|chr19:17342155:17342730:+	0	+
#Partially deleted in new
chr19	17351449	17351642	ENSG00000130300.8|PLVAP|pc|chr19:17351449:17351642:-	0	-
#Deleted in new
chr19	17362120	17362753	ENSG00000269350.1|AC010463.2|lncRNA|chr19:17362120:17362753:+	0	+
#Deleted in new
chr1	917369	917486	ENSG00000223764.2|AL645608.1|lncRNA|chr1:917369:917486:-	0	-
#Deleted in new
chr19	17403240	17403326	ENSG00000130303.12|BST2|pc|chr19:17403240:17403326:-	0	-
#Deleted in new
chr19	17403679	17403824	ENSG00000130303.12|BST2|pc|chr19:17403679:17403824:-	0	-
#Deleted in new
chr19	17403790	17403824	ENSG00000130303.12|BST2|pc|chr19:17403790:17403824:-	0	-
#Duplicated in new
chr19	17405740	17406296	ENSG00000282851.1|BISPR|lncRNA|chr19:17405740:17406296:+	0	+
#Duplicated in new
chr19	17405823	17406296	ENSG00000282851.1|BISPR|lncRNA|chr19:17405823:17406296:+	0	+
#Deleted in new
chr19	17413096	17413104	ENSG00000141971.12|MVB12A|pc|chr19:17413096:17413104:+	0	+
#Deleted in new
chr19	17413096	17413104	ENSG00000282851.1|BISPR|lncRNA|chr19:17413096:17413104:+	0	+
#Deleted in new
chr19	17413096	17413189	ENSG00000282851.1|BISPR|lncRNA|chr19:17413096:17413189:+	0	+
#Deleted in new
chr19	17413096	17413194	ENSG00000282851.1|BISPR|lncRNA|chr19:17413096:17413194:+	0	+
#Deleted in new
chr19	17413096	17413305	ENSG00000282851.1|BISPR|lncRNA|chr19:17413096:17413305:+	0	+
#Deleted in new
chr19	17413220	17413303	ENSG00000282851.1|BISPR|lncRNA|chr19:17413220:17413303:+	0	+
#Deleted in new
chr19	17413220	17413305	ENSG00000141971.12|MVB12A|pc|chr19:17413220:17413305:+	0	+
#Deleted in new
chr19	17413220	17413305	ENSG00000282851.1|BISPR|lncRNA|chr19:17413220:17413305:+	0	+
#Deleted in new
chr19	17414135	17414347	ENSG00000282851.1|BISPR|lncRNA|chr19:17414135:17414347:+	0	+
#Deleted in new
chr19	17414256	17414536	ENSG00000269481.1|AC010319.4|lncRNA|chr19:17414256:17414536:-	0	-
#Deleted in new
chr19	17414390	17414449	ENSG00000282851.1|BISPR|lncRNA|chr19:17414390:17414449:+	0	+
#Deleted in new
chr19	17414390	17414468	ENSG00000282851.1|BISPR|lncRNA|chr19:17414390:17414468:+	0	+
#Deleted in new
chr19	17414390	17414740	ENSG00000282851.1|BISPR|lncRNA|chr19:17414390:17414740:+	0	+
#Deleted in new
chr19	17414390	17414954	ENSG00000282851.1|BISPR|lncRNA|chr19:17414390:17414954:+	0	+
#Deleted in new
chr19	17414390	17415004	ENSG00000282851.1|BISPR|lncRNA|chr19:17414390:17415004:+	0	+
#Deleted in new
chr19	17414390	17415164	ENSG00000282851.1|BISPR|lncRNA|chr19:17414390:17415164:+	0	+
#Deleted in new
chr19	17414390	17415738	ENSG00000282851.1|BISPR|lncRNA|chr19:17414390:17415738:+	0	+
#Deleted in new
chr19	17418814	17418901	ENSG00000282851.1|BISPR|lncRNA|chr19:17418814:17418901:+	0	+
#Deleted in new
chr19	17418814	17418904	ENSG00000282851.1|BISPR|lncRNA|chr19:17418814:17418904:+	0	+
#Partially deleted in new
chr19	17422331	17422965	ENSG00000141971.12|MVB12A|pc|chr19:17422331:17422965:+	0	+
#Partially deleted in new
chr19	17424930	17425318	ENSG00000141971.12|MVB12A|pc|chr19:17424930:17425318:+	0	+
#Partially deleted in new
chr19	17424930	17425331	ENSG00000141971.12|MVB12A|pc|chr19:17424930:17425331:+	0	+
#Partially deleted in new
chr19	17424930	17425339	ENSG00000141971.12|MVB12A|pc|chr19:17424930:17425339:+	0	+
#Deleted in new
chr19	17425046	17425332	ENSG00000141971.12|MVB12A|pc|chr19:17425046:17425332:+	0	+
#Deleted in new
chr19	17433399	17433724	ENSG00000141971.12|MVB12A|pc|chr19:17433399:17433724:+	0	+
#Deleted in new
chr19	17452210	17452969	ENSG00000269736.1|AC010319.5|lncRNA|chr19:17452210:17452969:-	0	-
#Deleted in new
chr19	17483881	17484121	ENSG00000130304.16|SLC27A1|pc|chr19:17483881:17484121:+	0	+
#Deleted in new
chr19	17489800	17490120	ENSG00000269439.5|AC010618.3|lncRNA|chr19:17489800:17490120:-	0	-
#Deleted in new
chr19	17491075	17491197	ENSG00000269439.5|AC010618.3|lncRNA|chr19:17491075:17491197:-	0	-
#Partially deleted in new
chr19	17495414	17497464	ENSG00000130304.16|SLC27A1|pc|chr19:17495414:17497464:+	0	+
#Partially deleted in new
chr19	17497254	17499398	ENSG00000130304.16|SLC27A1|pc|chr19:17497254:17499398:+	0	+
#Deleted in new
chr19	17499869	17499954	ENSG00000130304.16|SLC27A1|pc|chr19:17499869:17499954:+	0	+
#Deleted in new
chr19	17503435	17503622	ENSG00000269439.5|AC010618.3|lncRNA|chr19:17503435:17503622:-	0	-
#Deleted in new
chr19	17510099	17510850	ENSG00000269439.5|AC010618.3|lncRNA|chr19:17510099:17510850:-	0	-
#Deleted in new
chr19	17511342	17511468	ENSG00000269439.5|AC010618.3|lncRNA|chr19:17511342:17511468:-	0	-
#Partially deleted in new
chr19	17511643	17513244	ENSG00000130313.6|PGLS|pc|chr19:17511643:17513244:+	0	+
#Deleted in new
chr19	17512944	17512968	ENSG00000130313.6|PGLS|pc|chr19:17512944:17512968:+	0	+
#Partially deleted in new
chr19	17515741	17516280	ENSG00000130313.6|PGLS|pc|chr19:17515741:17516280:+	0	+
#Deleted in new
chr19	17516370	17516474	ENSG00000130313.6|PGLS|pc|chr19:17516370:17516474:+	0	+
#Deleted in new
chr19	17518329	17518644	ENSG00000269161.1|AC010618.2|lncRNA|chr19:17518329:17518644:-	0	-
#Deleted in new
chr19	17520420	17520565	ENSG00000269161.1|AC010618.2|lncRNA|chr19:17520420:17520565:-	0	-
#Partially deleted in new
chr19	17545222	17546797	ENSG00000167483.17|FAM129C|pc|chr19:17545222:17546797:+	0	+
#Deleted in new
chr19	17551785	17551960	ENSG00000167483.17|FAM129C|pc|chr19:17551785:17551960:+	0	+
#Deleted in new
chr19	17551785	17552024	ENSG00000167483.17|FAM129C|pc|chr19:17551785:17552024:+	0	+
#Deleted in new
chr19	17551785	17552026	ENSG00000167483.17|FAM129C|pc|chr19:17551785:17552026:+	0	+
#Deleted in new
chr19	17551785	17552030	ENSG00000167483.17|FAM129C|pc|chr19:17551785:17552030:+	0	+
#Deleted in new
chr19	17551785	17553645	ENSG00000167483.17|FAM129C|pc|chr19:17551785:17553645:+	0	+
#Deleted in new
chr19	17553312	17553634	ENSG00000167483.17|FAM129C|pc|chr19:17553312:17553634:+	0	+
#Deleted in new
chr19	17553312	17553639	ENSG00000167483.17|FAM129C|pc|chr19:17553312:17553639:+	0	+
#Deleted in new
chr19	17553312	17553839	ENSG00000167483.17|FAM129C|pc|chr19:17553312:17553839:+	0	+
#Deleted in new
chr19	17556560	17556679	ENSG00000130309.10|COLGALT1|pc|chr19:17556560:17556679:+	0	+
#Deleted in new
chr19	17566032	17566183	ENSG00000130309.10|COLGALT1|pc|chr19:17566032:17566183:+	0	+
#Deleted in new
chr19	17571869	17571924	ENSG00000130309.10|COLGALT1|pc|chr19:17571869:17571924:+	0	+
#Partially deleted in new
chr19	17579950	17580905	ENSG00000130309.10|COLGALT1|pc|chr19:17579950:17580905:+	0	+
#Deleted in new
chr19	17613721	17613858	ENSG00000269752.1|AC008761.2|lncRNA|chr19:17613721:17613858:+	0	+
#Deleted in new
chr1	91766384	91766432	ENSG00000069702.10|TGFBR3|pc|chr1:91766384:91766432:-	0	-
#Deleted in new
chr1	91770841	91770970	ENSG00000069702.10|TGFBR3|pc|chr1:91770841:91770970:-	0	-
#Partially deleted in new
chr19	17720155	17720430	ENSG00000130479.10|MAP1S|pc|chr19:17720155:17720430:+	0	+
#Partially deleted in new
chr19	17720160	17720553	ENSG00000130479.10|MAP1S|pc|chr19:17720160:17720553:+	0	+
#Partially deleted in new
chr19	17720163	17720553	ENSG00000130479.10|MAP1S|pc|chr19:17720163:17720553:+	0	+
#Deleted in new
chr19	17720190	17720591	ENSG00000130479.10|MAP1S|pc|chr19:17720190:17720591:+	0	+
#Deleted in new
chr19	17720200	17720343	ENSG00000130479.10|MAP1S|pc|chr19:17720200:17720343:+	0	+
#Deleted in new
chr19	17720751	17720820	ENSG00000130479.10|MAP1S|pc|chr19:17720751:17720820:+	0	+
#Deleted in new
chr19	17721250	17721463	ENSG00000130479.10|MAP1S|pc|chr19:17721250:17721463:+	0	+
#Partially deleted in new
chr19	17728147	17728172	ENSG00000130479.10|MAP1S|pc|chr19:17728147:17728172:+	0	+
#Deleted in new
chr19	17728737	17728981	ENSG00000130479.10|MAP1S|pc|chr19:17728737:17728981:+	0	+
#Deleted in new
chr19	17734441	17734513	ENSG00000268112.1|AC008761.1|lncRNA|chr19:17734441:17734513:-	0	-
#Deleted in new
chr19	17752283	17752401	ENSG00000130475.14|FCHO1|pc|chr19:17752283:17752401:+	0	+
#Deleted in new
chr19	17753691	17753809	ENSG00000130475.14|FCHO1|pc|chr19:17753691:17753809:+	0	+
#Partially deleted in new
chr19	17754591	17754621	ENSG00000130475.14|FCHO1|pc|chr19:17754591:17754621:+	0	+
#Deleted in new
chr19	17758684	17758791	ENSG00000130475.14|FCHO1|pc|chr19:17758684:17758791:+	0	+
#Deleted in new
chr19	17794827	17794883	ENSG00000179913.10|B3GNT3|pc|chr19:17794827:17794883:+	0	+
#Deleted in new
chr19	17795109	17795206	ENSG00000179913.10|B3GNT3|pc|chr19:17795109:17795206:+	0	+
#Deleted in new
chr19	17795135	17795173	ENSG00000179913.10|B3GNT3|pc|chr19:17795135:17795173:+	0	+
#Deleted in new
chr19	17795156	17795206	ENSG00000179913.10|B3GNT3|pc|chr19:17795156:17795206:+	0	+
#Deleted in new
chr19	17820395	17820490	ENSG00000248099.3|INSL3|pc|chr19:17820395:17820490:-	0	-
#Deleted in new
chr19	17824779	17825310	ENSG00000105639.18|JAK3|pc|chr19:17824779:17825310:-	0	-
#Partially deleted in new
chr19	17824785	17826910	ENSG00000105639.18|JAK3|pc|chr19:17824785:17826910:-	0	-
#Partially deleted in new
chr19	17826151	17826910	ENSG00000105639.18|JAK3|pc|chr19:17826151:17826910:-	0	-
#Partially deleted in new
chr19	17836726	17837213	ENSG00000105639.18|JAK3|pc|chr19:17836726:17837213:-	0	-
#Deleted in new
chr19	17839179	17839293	ENSG00000105639.18|JAK3|pc|chr19:17839179:17839293:-	0	-
#Partially deleted in new
chr19	17860124	17860314	ENSG00000105640.12|RPL18A|pc|chr19:17860124:17860314:+	0	+
#Partially deleted in new
chr19	17860762	17861472	ENSG00000105640.12|RPL18A|pc|chr19:17860762:17861472:+	0	+
#Partially deleted in new
chr19	17863218	17864153	ENSG00000105640.12|RPL18A|pc|chr19:17863218:17864153:+	0	+
#Partially deleted in new
chr19	17893712	17895174	ENSG00000105641.3|SLC5A5|pc|chr19:17893712:17895174:+	0	+
#Deleted in new
chr19	17935095	17935191	ENSG00000007080.10|CCDC124|pc|chr19:17935095:17935191:+	0	+
#Deleted in new
chr19	17954560	17954653	ENSG00000105642.15|KCNN1|pc|chr19:17954560:17954653:+	0	+
#Deleted in new
chr19	17954560	17954681	ENSG00000105642.15|KCNN1|pc|chr19:17954560:17954681:+	0	+
#Deleted in new
chr19	17967124	17967317	ENSG00000105642.15|KCNN1|pc|chr19:17967124:17967317:+	0	+
#Partially deleted in new
chr19	1798760	1800155	ENSG00000130270.16|ATP8B3|pc|chr19:1798760:1800155:-	0	-
#Partially deleted in new
chr19	1798763	1800155	ENSG00000130270.16|ATP8B3|pc|chr19:1798763:1800155:-	0	-
#Partially deleted in new
chr19	17998151	18000080	ENSG00000105642.15|KCNN1|pc|chr19:17998151:18000080:+	0	+
#Deleted in new
chr19	18007181	18007371	ENSG00000105643.9|ARRDC2|pc|chr19:18007181:18007371:+	0	+
#Deleted in new
chr19	18007239	18007371	ENSG00000105643.9|ARRDC2|pc|chr19:18007239:18007371:+	0	+
#Deleted in new
chr19	18007589	18007842	ENSG00000105643.9|ARRDC2|pc|chr19:18007589:18007842:+	0	+
#Deleted in new
chr1	91800958	91801055	ENSG00000069702.10|TGFBR3|pc|chr1:91800958:91801055:-	0	-
#Deleted in new
chr1	918021	918110	ENSG00000223764.2|AL645608.1|lncRNA|chr1:918021:918110:-	0	-
#Deleted in new
chr1	918021	918534	ENSG00000223764.2|AL645608.1|lncRNA|chr1:918021:918534:-	0	-
#Deleted in new
chr19	1805189	1805279	ENSG00000130270.16|ATP8B3|pc|chr19:1805189:1805279:-	0	-
#Deleted in new
chr19	18070561	18071333	ENSG00000096996.15|IL12RB1|pc|chr19:18070561:18071333:-	0	-
#Deleted in new
chr19	18090649	18090769	ENSG00000096996.15|IL12RB1|pc|chr19:18090649:18090769:-	0	-
#Partially deleted in new
chr19	18098754	18098816	ENSG00000096996.15|IL12RB1|pc|chr19:18098754:18098816:-	0	-
#Partially deleted in new
chr19	18128865	18129359	ENSG00000099308.10|MAST3|pc|chr19:18128865:18129359:+	0	+
#Deleted in new
chr19	18172356	18172433	ENSG00000268173.3|AC007192.1|pc|chr19:18172356:18172433:+	0	+
#Deleted in new
chr19	18172756	18172877	ENSG00000268173.3|AC007192.1|pc|chr19:18172756:18172877:+	0	+
#Deleted in new
chr19	18173161	18173219	ENSG00000216490.3|IFI30|pc|chr19:18173161:18173219:+	0	+
#Deleted in new
chr19	18195998	18196742	ENSG00000254858.9|MPV17L2|pc|chr19:18195998:18196742:+	0	+
#Partially deleted in new
chr19	18195998	18196948	ENSG00000254858.9|MPV17L2|pc|chr19:18195998:18196948:+	0	+
#Deleted in new
chr19	18205455	18205563	ENSG00000268650.3|AC005759.1|lncRNA|chr19:18205455:18205563:+	0	+
#Partially deleted in new
chr19	18207960	18211276	ENSG00000105650.21|PDE4C|pc|chr19:18207960:18211276:-	0	-
#Deleted in new
chr19	18208289	18208429	ENSG00000268650.3|AC005759.1|lncRNA|chr19:18208289:18208429:+	0	+
#Partially deleted in new
chr19	18208651	18211276	ENSG00000105650.21|PDE4C|pc|chr19:18208651:18211276:-	0	-
#Deleted in new
chr19	18208937	18209046	ENSG00000268650.3|AC005759.1|lncRNA|chr19:18208937:18209046:+	0	+
#Deleted in new
chr19	18217185	18217307	ENSG00000268650.3|AC005759.1|lncRNA|chr19:18217185:18217307:+	0	+
#Deleted in new
chr19	18219508	18219516	ENSG00000268650.3|AC005759.1|lncRNA|chr19:18219508:18219516:+	0	+
#Partially deleted in new
chr19	1822088	1823257	ENSG00000267244.5|AC012615.6|lncRNA|chr19:1822088:1823257:+	0	+
#Partially deleted in new
chr19	1822145	1824542	ENSG00000267244.5|AC012615.6|lncRNA|chr19:1822145:1824542:+	0	+
#Deleted in new
chr19	18224234	18224493	ENSG00000105650.21|PDE4C|pc|chr19:18224234:18224493:-	0	-
#Deleted in new
chr19	1822560	1822692	ENSG00000267244.5|AC012615.6|lncRNA|chr19:1822560:1822692:+	0	+
#Deleted in new
chr19	1823014	1823154	ENSG00000267244.5|AC012615.6|lncRNA|chr19:1823014:1823154:+	0	+
#Deleted in new
chr19	1823199	1823257	ENSG00000267244.5|AC012615.6|lncRNA|chr19:1823199:1823257:+	0	+
#Partially deleted in new
chr19	18232949	18233671	ENSG00000105650.21|PDE4C|pc|chr19:18232949:18233671:-	0	-
#Deleted in new
chr19	1824108	1824542	ENSG00000267244.5|AC012615.6|lncRNA|chr19:1824108:1824542:+	0	+
#Deleted in new
chr19	1824217	1824542	ENSG00000267244.5|AC012615.6|lncRNA|chr19:1824217:1824542:+	0	+
#Deleted in new
chr19	18255219	18255351	ENSG00000105650.21|PDE4C|pc|chr19:18255219:18255351:-	0	-
#Deleted in new
chr19	18255219	18255419	ENSG00000105650.21|PDE4C|pc|chr19:18255219:18255419:-	0	-
#Deleted in new
chr19	18267771	18267967	ENSG00000130518.16|KIAA1683|pc|chr19:18267771:18267967:-	0	-
#Partially deleted in new
chr19	18306229	18307555	ENSG00000130520.10|LSM4|pc|chr19:18306229:18307555:-	0	-
#Partially deleted in new
chr19	18306906	18307555	ENSG00000130520.10|LSM4|pc|chr19:18306906:18307555:-	0	-
#Partially deleted in new
chr19	18306915	18307555	ENSG00000130520.10|LSM4|pc|chr19:18306915:18307555:-	0	-
#Deleted in new
chr19	1830705	1830866	ENSG00000079313.13|REXO1|pc|chr19:1830705:1830866:-	0	-
#Deleted in new
chr19	18310109	18310214	ENSG00000130520.10|LSM4|pc|chr19:18310109:18310214:-	0	-
#Partially deleted in new
chr19	18312168	18312702	ENSG00000130520.10|LSM4|pc|chr19:18312168:18312702:-	0	-
#Partially deleted in new
chr19	18316023	18316259	ENSG00000130520.10|LSM4|pc|chr19:18316023:18316259:-	0	-
#Deleted in new
chr19	18348947	18349068	ENSG00000130517.13|PGPEP1|pc|chr19:18348947:18349068:+	0	+
#Deleted in new
chr19	18358005	18358070	ENSG00000130517.13|PGPEP1|pc|chr19:18358005:18358070:+	0	+
#Partially deleted in new
chr19	18363390	18369950	ENSG00000130517.13|PGPEP1|pc|chr19:18363390:18369950:+	0	+
#Deleted in new
chr19	18369705	18369930	ENSG00000130517.13|PGPEP1|pc|chr19:18369705:18369930:+	0	+
#Deleted in new
chr19	18369705	18369948	ENSG00000130517.13|PGPEP1|pc|chr19:18369705:18369948:+	0	+
#Deleted in new
chr19	18374730	18375000	ENSG00000130513.6|GDF15|pc|chr19:18374730:18375000:+	0	+
#Deleted in new
chr19	18374751	18375003	ENSG00000130513.6|GDF15|pc|chr19:18374751:18375003:+	0	+
#Deleted in new
chr19	18382169	18382447	ENSG00000130513.6|GDF15|pc|chr19:18382169:18382447:+	0	+
#Deleted in new
chr19	18382349	18382447	ENSG00000130513.6|GDF15|pc|chr19:18382349:18382447:+	0	+
#Partially deleted in new
chr19	18391143	18392125	ENSG00000175489.9|LRRC25|pc|chr19:18391143:18392125:-	0	-
#Partially deleted in new
chr19	18391148	18392125	ENSG00000175489.9|LRRC25|pc|chr19:18391148:18392125:-	0	-
#Deleted in new
chr19	18418863	18419149	ENSG00000130511.15|SSBP4|pc|chr19:18418863:18419149:+	0	+
#Deleted in new
chr19	18441418	18441544	ENSG00000268199.2|AC010335.1|lncRNA|chr19:18441418:18441544:+	0	+
#Deleted in new
chr19	18448274	18448802	ENSG00000279262.1|AC010335.2|lncRNA|chr19:18448274:18448802:+	0	+
#Deleted in new
chr19	18448274	18448805	ENSG00000280121.1|AC010335.3|lncRNA|chr19:18448274:18448805:-	0	-
#Deleted in new
chr19	18470975	18471035	ENSG00000105656.12|ELL|pc|chr19:18470975:18471035:-	0	-
#Partially deleted in new
chr19	18472406	18472882	ENSG00000105656.12|ELL|pc|chr19:18472406:18472882:-	0	-
#Deleted in new
chr19	18475813	18475933	ENSG00000105656.12|ELL|pc|chr19:18475813:18475933:-	0	-
#Partially deleted in new
chr19	18531612	18531768	ENSG00000268938.2|AC005387.1|lncRNA|chr19:18531612:18531768:+	0	+
#Deleted in new
chr19	18535985	18536188	ENSG00000269191.1|AC005387.2|lncRNA|chr19:18535985:18536188:+	0	+
#Deleted in new
chr19	18542887	18542972	ENSG00000105701.15|FKBP8|pc|chr19:18542887:18542972:-	0	-
#Deleted in new
chr19	18543908	18544058	ENSG00000105701.15|FKBP8|pc|chr19:18543908:18544058:-	0	-
#Deleted in new
chr19	18543908	18544077	ENSG00000105701.15|FKBP8|pc|chr19:18543908:18544077:-	0	-
#Partially deleted in new
chr19	18557774	18559643	ENSG00000268030.1|AC005253.1|lncRNA|chr19:18557774:18559643:-	0	-
#Deleted in new
chr19	18558538	18558604	ENSG00000105700.10|KXD1|pc|chr19:18558538:18558604:+	0	+
#Deleted in new
chr19	18558653	18558766	ENSG00000105700.10|KXD1|pc|chr19:18558653:18558766:+	0	+
#Deleted in new
chr19	18558826	18559130	ENSG00000105700.10|KXD1|pc|chr19:18558826:18559130:+	0	+
#Deleted in new
chr19	18559111	18560550	ENSG00000105700.10|KXD1|pc|chr19:18559111:18560550:+	0	+
#Deleted in new
chr19	18559172	18559285	ENSG00000105700.10|KXD1|pc|chr19:18559172:18559285:+	0	+
#Deleted in new
chr19	18559580	18559786	ENSG00000105700.10|KXD1|pc|chr19:18559580:18559786:+	0	+
#Deleted in new
chr19	18560099	18560550	ENSG00000105700.10|KXD1|pc|chr19:18560099:18560550:+	0	+
#Deleted in new
chr19	18560419	18560550	ENSG00000105700.10|KXD1|pc|chr19:18560419:18560550:+	0	+
#Deleted in new
chr19	18561428	18561560	ENSG00000268030.1|AC005253.1|lncRNA|chr19:18561428:18561560:-	0	-
#Partially deleted in new
chr19	18561519	18562157	ENSG00000105700.10|KXD1|pc|chr19:18561519:18562157:+	0	+
#Deleted in new
chr19	18565133	18565190	ENSG00000105700.10|KXD1|pc|chr19:18565133:18565190:+	0	+
#Partially deleted in new
chr19	18571878	18572607	ENSG00000221983.7|UBA52|pc|chr19:18571878:18572607:+	0	+
#Deleted in new
chr19	18572219	18573007	ENSG00000006016.10|CRLF1|pc|chr19:18572219:18573007:-	0	-
#Deleted in new
chr19	18572350	18572607	ENSG00000221983.7|UBA52|pc|chr19:18572350:18572607:+	0	+
#Deleted in new
chr19	18572739	18572960	ENSG00000221983.7|UBA52|pc|chr19:18572739:18572960:+	0	+
#Partially deleted in new
chr19	18575056	18577550	ENSG00000221983.7|UBA52|pc|chr19:18575056:18577550:+	0	+
#Deleted in new
chr19	18577002	18577290	ENSG00000221983.7|UBA52|pc|chr19:18577002:18577290:+	0	+
#Deleted in new
chr19	18583569	18583612	ENSG00000006016.10|CRLF1|pc|chr19:18583569:18583612:-	0	-
#Partially deleted in new
chr19	18589871	18592336	ENSG00000006015.17|C19orf60|pc|chr19:18589871:18592336:+	0	+
#Partially deleted in new
chr19	18590273	18590933	ENSG00000006015.17|C19orf60|pc|chr19:18590273:18590933:+	0	+
#Partially deleted in new
chr19	1860249	1860444	ENSG00000267141.1|AC012615.4|lncRNA|chr19:1860249:1860444:+	0	+
#Deleted in new
chr19	1861473	1861634	ENSG00000267141.1|AC012615.4|lncRNA|chr19:1861473:1861634:+	0	+
#Deleted in new
chr19	1861768	1862019	ENSG00000267141.1|AC012615.4|lncRNA|chr19:1861768:1862019:+	0	+
#Deleted in new
chr19	18667400	18667626	ENSG00000167487.11|KLHL26|pc|chr19:18667400:18667626:+	0	+
#Partially deleted in new
chr19	18669241	18669798	ENSG00000167487.11|KLHL26|pc|chr19:18669241:18669798:+	0	+
#Deleted in new
chr19	1874870	1876169	ENSG00000261526.2|AC012615.1|lncRNA|chr19:1874870:1876169:-	0	-
#Deleted in new
chr19	1875015	1875209	ENSG00000267232.1|AC012615.5|lncRNA|chr19:1875015:1875209:+	0	+
#Deleted in new
chr19	1875605	1875992	ENSG00000267232.1|AC012615.5|lncRNA|chr19:1875605:1875992:+	0	+
#Partially deleted in new
chr19	1877507	1880115	ENSG00000129968.15|ABHD17A|pc|chr19:1877507:1880115:-	0	-
#Deleted in new
chr19	1878663	1878904	ENSG00000129968.15|ABHD17A|pc|chr19:1878663:1878904:-	0	-
#Partially deleted in new
chr19	1878663	1880115	ENSG00000129968.15|ABHD17A|pc|chr19:1878663:1880115:-	0	-
#Partially deleted in new
chr19	1880895	1881048	ENSG00000129968.15|ABHD17A|pc|chr19:1880895:1881048:-	0	-
#Deleted in new
chr1	918824	918915	ENSG00000223764.2|AL645608.1|lncRNA|chr1:918824:918915:-	0	-
#Partially deleted in new
chr19	18848132	18848434	ENSG00000005007.12|UPF1|pc|chr19:18848132:18848434:+	0	+
#Deleted in new
chr19	18849007	18849031	ENSG00000005007.12|UPF1|pc|chr19:18849007:18849031:+	0	+
#Deleted in new
chr19	18849007	18849076	ENSG00000005007.12|UPF1|pc|chr19:18849007:18849076:+	0	+
#Deleted in new
chr19	18849081	18849181	ENSG00000005007.12|UPF1|pc|chr19:18849081:18849181:+	0	+
#Deleted in new
chr19	18849165	18849446	ENSG00000005007.12|UPF1|pc|chr19:18849165:18849446:+	0	+
#Partially deleted in new
chr19	18849812	18849985	ENSG00000005007.12|UPF1|pc|chr19:18849812:18849985:+	0	+
#Partially deleted in new
chr19	18859382	18860438	ENSG00000005007.12|UPF1|pc|chr19:18859382:18860438:+	0	+
#Partially deleted in new
chr19	18862932	18863612	ENSG00000005007.12|UPF1|pc|chr19:18862932:18863612:+	0	+
#Partially deleted in new
chr19	18877908	18879039	ENSG00000223802.7|CERS1|pc|chr19:18877908:18879039:-	0	-
#Partially deleted in new
chr19	18877910	18879039	ENSG00000223802.7|CERS1|pc|chr19:18877910:18879039:-	0	-
#Deleted in new
chr19	18877916	18878098	ENSG00000223802.7|CERS1|pc|chr19:18877916:18878098:-	0	-
#Deleted in new
chr19	18881679	18882072	ENSG00000269694.1|AC005197.1|lncRNA|chr19:18881679:18882072:+	0	+
#Deleted in new
chr19	18883086	18883376	ENSG00000269694.1|AC005197.1|lncRNA|chr19:18883086:18883376:+	0	+
#Deleted in new
chr19	18896560	18896727	ENSG00000223802.7|CERS1|pc|chr19:18896560:18896727:-	0	-
#Partially deleted in new
chr19	18899513	18899709	ENSG00000105669.13|COPE|pc|chr19:18899513:18899709:-	0	-
#Partially deleted in new
chr19	18899513	18899726	ENSG00000105669.13|COPE|pc|chr19:18899513:18899726:-	0	-
#Partially deleted in new
chr19	18899516	18899726	ENSG00000105669.13|COPE|pc|chr19:18899516:18899726:-	0	-
#Partially deleted in new
chr19	18899528	18899726	ENSG00000105669.13|COPE|pc|chr19:18899528:18899726:-	0	-
#Partially deleted in new
chr19	18905575	18906235	ENSG00000105669.13|COPE|pc|chr19:18905575:18906235:-	0	-
#Deleted in new
chr19	18905866	18905935	ENSG00000105669.13|COPE|pc|chr19:18905866:18905935:-	0	-
#Partially deleted in new
chr19	18911026	18911373	ENSG00000105669.13|COPE|pc|chr19:18911026:18911373:-	0	-
#Deleted in new
chr19	18920833	18920909	ENSG00000105671.11|DDX49|pc|chr19:18920833:18920909:+	0	+
#Deleted in new
chr19	18920844	18920909	ENSG00000105671.11|DDX49|pc|chr19:18920844:18920909:+	0	+
#Deleted in new
chr19	18925129	18925185	ENSG00000105671.11|DDX49|pc|chr19:18925129:18925185:+	0	+
#Partially deleted in new
chr19	18938968	18939635	ENSG00000051128.18|HOMER3|pc|chr19:18938968:18939635:-	0	-
#Deleted in new
chr19	18946080	18946228	ENSG00000269019.1|AC002985.2|lncRNA|chr19:18946080:18946228:+	0	+
#Partially deleted in new
chr19	18991339	18991553	ENSG00000064607.16|SUGP2|pc|chr19:18991339:18991553:-	0	-
#Partially deleted in new
chr19	18991339	18991618	ENSG00000064607.16|SUGP2|pc|chr19:18991339:18991618:-	0	-
#Partially deleted in new
chr19	18992366	18993740	ENSG00000064607.16|SUGP2|pc|chr19:18992366:18993740:-	0	-
#Deleted in new
chr19	18993276	18993442	ENSG00000064607.16|SUGP2|pc|chr19:18993276:18993442:-	0	-
#Deleted in new
chr19	18998923	18998985	ENSG00000064607.16|SUGP2|pc|chr19:18998923:18998985:-	0	-
#Deleted in new
chr19	19003495	19003608	ENSG00000064607.16|SUGP2|pc|chr19:19003495:19003608:-	0	-
#Deleted in new
chr19	19007346	19007447	ENSG00000064607.16|SUGP2|pc|chr19:19007346:19007447:-	0	-
#Deleted in new
chr19	19037551	19037707	ENSG00000105676.13|ARMC6|pc|chr19:19037551:19037707:+	0	+
#Deleted in new
chr19	19039321	19039414	ENSG00000105676.13|ARMC6|pc|chr19:19039321:19039414:+	0	+
#Deleted in new
chr19	19040689	19040792	ENSG00000105676.13|ARMC6|pc|chr19:19040689:19040792:+	0	+
#Partially deleted in new
chr19	1905399	1907184	ENSG00000227500.9|SCAMP4|pc|chr19:1905399:1907184:+	0	+
#Deleted in new
chr1	91905825	91906335	ENSG00000069702.10|TGFBR3|pc|chr1:91905825:91906335:-	0	-
#Partially deleted in new
chr19	1908018	1908635	ENSG00000213638.5|ADAT3|pc|chr19:1908018:1908635:+	0	+
#Deleted in new
chr19	1908263	1908635	ENSG00000227500.9|SCAMP4|pc|chr19:1908263:1908635:+	0	+
#Deleted in new
chr19	1908280	1908635	ENSG00000227500.9|SCAMP4|pc|chr19:1908280:1908635:+	0	+
#Deleted in new
chr1	9191047	9191124	ENSG00000234546.3|LINC01759|lncRNA|chr1:9191047:9191124:+	0	+
#Partially deleted in new
chr19	19104912	19105234	ENSG00000181035.13|SLC25A42|pc|chr19:19104912:19105234:+	0	+
#Deleted in new
chr1	9191392	9191967	ENSG00000234546.3|LINC01759|lncRNA|chr1:9191392:9191967:+	0	+
#Deleted in new
chr1	9191392	9192089	ENSG00000234546.3|LINC01759|lncRNA|chr1:9191392:9192089:+	0	+
#Deleted in new
chr19	1914520	1914544	ENSG00000227500.9|SCAMP4|pc|chr19:1914520:1914544:+	0	+
#Deleted in new
chr19	1914978	1915026	ENSG00000227500.9|SCAMP4|pc|chr19:1914978:1915026:+	0	+
#Deleted in new
chr19	1915431	1915544	ENSG00000227500.9|SCAMP4|pc|chr19:1915431:1915544:+	0	+
#Deleted in new
chr19	19157024	19157142	ENSG00000213999.15|MEF2B|pc|chr19:19157024:19157142:-	0	-
#Deleted in new
chr19	19157215	19157283	ENSG00000064489.22|BORCS8-MEF2B|pc|chr19:19157215:19157283:-	0	-
#Deleted in new
chr19	19176902	19177515	ENSG00000254901.7|BORCS8|pc|chr19:19176902:19177515:-	0	-
#Deleted in new
chr19	19176903	19180601	ENSG00000254901.7|BORCS8|pc|chr19:19176903:19180601:-	0	-
#Deleted in new
chr19	19176905	19177460	ENSG00000254901.7|BORCS8|pc|chr19:19176905:19177460:-	0	-
#Deleted in new
chr19	19176931	19177136	ENSG00000254901.7|BORCS8|pc|chr19:19176931:19177136:-	0	-
#Deleted in new
chr19	19177007	19177460	ENSG00000254901.7|BORCS8|pc|chr19:19177007:19177460:-	0	-
#Deleted in new
chr19	19178846	19180761	ENSG00000254901.7|BORCS8|pc|chr19:19178846:19180761:-	0	-
#Deleted in new
chr19	19180685	19180761	ENSG00000064489.22|BORCS8-MEF2B|pc|chr19:19180685:19180761:-	0	-
#Deleted in new
chr19	19180685	19180761	ENSG00000254901.7|BORCS8|pc|chr19:19180685:19180761:-	0	-
#Partially deleted in new
chr19	19181881	19182683	ENSG00000254901.7|BORCS8|pc|chr19:19181881:19182683:-	0	-
#Deleted in new
chr19	19182293	19182347	ENSG00000064489.22|BORCS8-MEF2B|pc|chr19:19182293:19182347:-	0	-
#Deleted in new
chr19	1918643	1918659	ENSG00000227500.9|SCAMP4|pc|chr19:1918643:1918659:+	0	+
#Deleted in new
chr19	19200818	19200893	ENSG00000064490.13|RFXANK|pc|chr19:19200818:19200893:+	0	+
#Deleted in new
chr19	19201415	19201563	ENSG00000184162.14|NR2C2AP|pc|chr19:19201415:19201563:-	0	-
#Deleted in new
chr19	1920647	1920743	ENSG00000227500.9|SCAMP4|pc|chr19:1920647:1920743:+	0	+
#Deleted in new
chr19	1921740	1922156	ENSG00000227500.9|SCAMP4|pc|chr19:1921740:1922156:+	0	+
#Partially deleted in new
chr19	1922112	1923187	ENSG00000227500.9|SCAMP4|pc|chr19:1922112:1923187:+	0	+
#Partially deleted in new
chr19	1924107	1926005	ENSG00000227500.9|SCAMP4|pc|chr19:1924107:1926005:+	0	+
#Partially deleted in new
chr19	1924107	1926011	ENSG00000227500.9|SCAMP4|pc|chr19:1924107:1926011:+	0	+
#Partially deleted in new
chr19	1924107	1926013	ENSG00000227500.9|SCAMP4|pc|chr19:1924107:1926013:+	0	+
#Partially deleted in new
chr19	19276017	19276674	ENSG00000105705.15|SUGP1|pc|chr19:19276017:19276674:-	0	-
#Deleted in new
chr19	19301658	19302018	ENSG00000105705.15|SUGP1|pc|chr19:19301658:19302018:-	0	-
#Deleted in new
chr19	19334172	19334602	ENSG00000129933.20|MAU2|pc|chr19:19334172:19334602:+	0	+
#Deleted in new
chr1	919334	919692	ENSG00000223764.2|AL645608.1|lncRNA|chr1:919334:919692:-	0	-
#Deleted in new
chr19	19339666	19339704	ENSG00000129933.20|MAU2|pc|chr19:19339666:19339704:+	0	+
#Split in new
chr19	19347649	19348938	ENSG00000129933.20|MAU2|pc|chr19:19347649:19348938:+	0	+
#Deleted in new
chr19	19352269	19352395	ENSG00000129933.20|MAU2|pc|chr19:19352269:19352395:+	0	+
#Partially deleted in new
chr19	19352397	19354203	ENSG00000129933.20|MAU2|pc|chr19:19352397:19354203:+	0	+
#Partially deleted in new
chr19	19355707	19357753	ENSG00000129933.20|MAU2|pc|chr19:19355707:19357753:+	0	+
#Partially deleted in new
chr19	19355707	19357755	ENSG00000129933.20|MAU2|pc|chr19:19355707:19357755:+	0	+
#Partially deleted in new
chr19	19355707	19357760	ENSG00000129933.20|MAU2|pc|chr19:19355707:19357760:+	0	+
#Partially deleted in new
chr19	19355707	19358079	ENSG00000129933.20|MAU2|pc|chr19:19355707:19358079:+	0	+
#Partially deleted in new
chr19	19355707	19358755	ENSG00000129933.20|MAU2|pc|chr19:19355707:19358755:+	0	+
#Partially deleted in new
chr19	19401978	19402306	ENSG00000267234.1|AC092067.1|lncRNA|chr19:19401978:19402306:-	0	-
#Deleted in new
chr19	19402443	19402603	ENSG00000267234.1|AC092067.1|lncRNA|chr19:19402443:19402603:-	0	-
#Deleted in new
chr19	19427695	19427992	ENSG00000167491.17|GATAD2A|pc|chr19:19427695:19427992:+	0	+
#Deleted in new
chr19	19457111	19457229	ENSG00000167491.17|GATAD2A|pc|chr19:19457111:19457229:+	0	+
#Deleted in new
chr19	19458465	19458614	ENSG00000167491.17|GATAD2A|pc|chr19:19458465:19458614:+	0	+
#Deleted in new
chr19	19472409	19472715	ENSG00000167491.17|GATAD2A|pc|chr19:19472409:19472715:+	0	+
#Deleted in new
chr1	91949370	91949682	ENSG00000137948.18|BRDT|pc|chr1:91949370:91949682:+	0	+
#Deleted in new
chr1	91949371	91949519	ENSG00000137948.18|BRDT|pc|chr1:91949371:91949519:+	0	+
#Deleted in new
chr1	91949383	91949488	ENSG00000137948.18|BRDT|pc|chr1:91949383:91949488:+	0	+
#Deleted in new
chr1	91949397	91949488	ENSG00000137948.18|BRDT|pc|chr1:91949397:91949488:+	0	+
#Deleted in new
chr1	91949397	91949519	ENSG00000137948.18|BRDT|pc|chr1:91949397:91949519:+	0	+
#Deleted in new
chr1	91949397	91949682	ENSG00000137948.18|BRDT|pc|chr1:91949397:91949682:+	0	+
#Deleted in new
chr1	91949400	91949488	ENSG00000137948.18|BRDT|pc|chr1:91949400:91949488:+	0	+
#Deleted in new
chr1	91949400	91949682	ENSG00000137948.18|BRDT|pc|chr1:91949400:91949682:+	0	+
#Deleted in new
chr1	91949402	91949519	ENSG00000137948.18|BRDT|pc|chr1:91949402:91949519:+	0	+
#Deleted in new
chr1	91949433	91949682	ENSG00000137948.18|BRDT|pc|chr1:91949433:91949682:+	0	+
#Deleted in new
chr1	91949637	91949682	ENSG00000137948.18|BRDT|pc|chr1:91949637:91949682:+	0	+
#Deleted in new
chr1	91949889	91949958	ENSG00000137948.18|BRDT|pc|chr1:91949889:91949958:+	0	+
#Deleted in new
chr1	91949889	91950312	ENSG00000137948.18|BRDT|pc|chr1:91949889:91950312:+	0	+
#Deleted in new
chr1	91949889	91950332	ENSG00000137948.18|BRDT|pc|chr1:91949889:91950332:+	0	+
#Deleted in new
chr1	91949889	91950474	ENSG00000137948.18|BRDT|pc|chr1:91949889:91950474:+	0	+
#Deleted in new
chr1	91949899	91949958	ENSG00000137948.18|BRDT|pc|chr1:91949899:91949958:+	0	+
#Deleted in new
chr1	91949899	91950299	ENSG00000137948.18|BRDT|pc|chr1:91949899:91950299:+	0	+
#Deleted in new
chr1	91949899	91950302	ENSG00000137948.18|BRDT|pc|chr1:91949899:91950302:+	0	+
#Deleted in new
chr1	91949899	91950474	ENSG00000137948.18|BRDT|pc|chr1:91949899:91950474:+	0	+
#Deleted in new
chr1	91950107	91950474	ENSG00000137948.18|BRDT|pc|chr1:91950107:91950474:+	0	+
#Deleted in new
chr1	91950304	91950474	ENSG00000137948.18|BRDT|pc|chr1:91950304:91950474:+	0	+
#Deleted in new
chr1	91950715	91950811	ENSG00000137948.18|BRDT|pc|chr1:91950715:91950811:+	0	+
#Deleted in new
chr19	19512417	19512542	ENSG00000178093.13|TSSK6|pc|chr19:19512417:19512542:-	0	-
#Deleted in new
chr19	19512455	19512542	ENSG00000178093.13|TSSK6|pc|chr19:19512455:19512542:-	0	-
#Deleted in new
chr19	1952530	1953011	ENSG00000180846.8|CSNK1G2-AS1|lncRNA|chr19:1952530:1953011:-	0	-
#Deleted in new
chr19	1952588	1953011	ENSG00000180846.8|CSNK1G2-AS1|lncRNA|chr19:1952588:1953011:-	0	-
#Partially deleted in new
chr19	19526181	19526718	ENSG00000186010.18|NDUFA13|pc|chr19:19526181:19526718:+	0	+
#Partially deleted in new
chr19	19527700	19528022	ENSG00000186010.18|NDUFA13|pc|chr19:19527700:19528022:+	0	+
#Deleted in new
chr19	19529363	19529513	ENSG00000250067.11|YJEFN3|pc|chr19:19529363:19529513:+	0	+
#Deleted in new
chr19	19529363	19529517	ENSG00000258674.5|AC011448.1|pc|chr19:19529363:19529517:+	0	+
#Partially deleted in new
chr19	19533103	19533476	ENSG00000258674.5|AC011448.1|pc|chr19:19533103:19533476:+	0	+
#Partially deleted in new
chr19	19533103	19535144	ENSG00000250067.11|YJEFN3|pc|chr19:19533103:19535144:+	0	+
#Deleted in new
chr19	1953385	1953506	ENSG00000180846.8|CSNK1G2-AS1|lncRNA|chr19:1953385:1953506:-	0	-
#Deleted in new
chr19	1953842	1954198	ENSG00000180846.8|CSNK1G2-AS1|lncRNA|chr19:1953842:1954198:-	0	-
#Deleted in new
chr19	1953842	1954586	ENSG00000180846.8|CSNK1G2-AS1|lncRNA|chr19:1953842:1954586:-	0	-
#Deleted in new
chr19	1954255	1954549	ENSG00000180846.8|CSNK1G2-AS1|lncRNA|chr19:1954255:1954549:-	0	-
#Deleted in new
chr19	1954620	1954715	ENSG00000133275.15|CSNK1G2|pc|chr19:1954620:1954715:+	0	+
#Deleted in new
chr19	1954632	1954715	ENSG00000133275.15|CSNK1G2|pc|chr19:1954632:1954715:+	0	+
#Deleted in new
chr1	91957528	91957600	ENSG00000137948.18|BRDT|pc|chr1:91957528:91957600:+	0	+
#Deleted in new
chr19	19579831	19579954	ENSG00000105717.13|PBX4|pc|chr19:19579831:19579954:-	0	-
#Deleted in new
chr19	1959237	1959303	ENSG00000133275.15|CSNK1G2|pc|chr19:1959237:1959303:+	0	+
#Deleted in new
chr19	19606349	19606765	ENSG00000259242.2|AC002306.1|lncRNA|chr19:19606349:19606765:+	0	+
#Deleted in new
chr19	19608139	19608660	ENSG00000259242.2|AC002306.1|lncRNA|chr19:19608139:19608660:+	0	+
#Deleted in new
chr19	19660528	19660619	ENSG00000105726.16|ATP13A1|pc|chr19:19660528:19660619:-	0	-
#Deleted in new
chr19	19672209	19672358	ENSG00000181896.11|ZNF101|pc|chr19:19672209:19672358:+	0	+
#Partially deleted in new
chr19	19676140	19677986	ENSG00000181896.11|ZNF101|pc|chr19:19676140:19677986:+	0	+
#Split in new
chr19	19679180	19683506	ENSG00000181896.11|ZNF101|pc|chr19:19679180:19683506:+	0	+
#Deleted in new
chr19	19680855	19680952	ENSG00000181896.11|ZNF101|pc|chr19:19680855:19680952:+	0	+
#Deleted in new
chr19	19682431	19682485	ENSG00000181896.11|ZNF101|pc|chr19:19682431:19682485:+	0	+
#Deleted in new
chr19	19683082	19683509	ENSG00000181896.11|ZNF101|pc|chr19:19683082:19683509:+	0	+
#Deleted in new
chr19	1968790	1968905	ENSG00000133275.15|CSNK1G2|pc|chr19:1968790:1968905:+	0	+
#Deleted in new
chr19	19732955	19733097	ENSG00000105708.8|ZNF14|pc|chr19:19732955:19733097:-	0	-
#Deleted in new
chr19	1974687	1974751	ENSG00000133275.15|CSNK1G2|pc|chr19:1974687:1974751:+	0	+
#Partially deleted in new
chr19	19757365	19758546	ENSG00000266904.5|LINC00663|lncRNA|chr19:19757365:19758546:-	0	-
#Deleted in new
chr19	19761037	19761421	ENSG00000267581.1|AC011477.4|lncRNA|chr19:19761037:19761421:-	0	-
#Deleted in new
chr19	19761157	19761421	ENSG00000266904.5|LINC00663|lncRNA|chr19:19761157:19761421:-	0	-
#Deleted in new
chr19	19761203	19761421	ENSG00000266904.5|LINC00663|lncRNA|chr19:19761203:19761421:-	0	-
#Deleted in new
chr19	19761256	19761421	ENSG00000266904.5|LINC00663|lncRNA|chr19:19761256:19761421:-	0	-
#Deleted in new
chr19	19761325	19761421	ENSG00000266904.5|LINC00663|lncRNA|chr19:19761325:19761421:-	0	-
#Deleted in new
chr19	19762537	19762646	ENSG00000266904.5|LINC00663|lncRNA|chr19:19762537:19762646:-	0	-
#Deleted in new
chr19	19762537	19762646	ENSG00000267581.1|AC011477.4|lncRNA|chr19:19762537:19762646:-	0	-
#Deleted in new
chr19	19771571	19771805	ENSG00000266904.5|LINC00663|lncRNA|chr19:19771571:19771805:-	0	-
#Partially deleted in new
chr19	19773877	19776423	ENSG00000266904.5|LINC00663|lncRNA|chr19:19773877:19776423:-	0	-
#Deleted in new
chr19	19776322	19776376	ENSG00000266904.5|LINC00663|lncRNA|chr19:19776322:19776376:-	0	-
#Deleted in new
chr19	19776322	19776394	ENSG00000266904.5|LINC00663|lncRNA|chr19:19776322:19776394:-	0	-
#Deleted in new
chr19	19776326	19776380	ENSG00000266904.5|LINC00663|lncRNA|chr19:19776326:19776380:-	0	-
#Deleted in new
chr19	19776326	19776385	ENSG00000266904.5|LINC00663|lncRNA|chr19:19776326:19776385:-	0	-
#Deleted in new
chr19	19776326	19776393	ENSG00000266904.5|LINC00663|lncRNA|chr19:19776326:19776393:-	0	-
#Deleted in new
chr19	19776326	19776413	ENSG00000266904.5|LINC00663|lncRNA|chr19:19776326:19776413:-	0	-
#Deleted in new
chr19	19785838	19786854	ENSG00000081665.13|ZNF506|pc|chr19:19785838:19786854:-	0	-
#Deleted in new
chr19	19785841	19786854	ENSG00000081665.13|ZNF506|pc|chr19:19785841:19786854:-	0	-
#Deleted in new
chr19	19786386	19786854	ENSG00000081665.13|ZNF506|pc|chr19:19786386:19786854:-	0	-
#Deleted in new
chr19	19786561	19786854	ENSG00000081665.13|ZNF506|pc|chr19:19786561:19786854:-	0	-
#Deleted in new
chr19	19788754	19789129	ENSG00000267481.1|AC011477.2|lncRNA|chr19:19788754:19789129:-	0	-
#Deleted in new
chr19	19789985	19790531	ENSG00000267481.1|AC011477.2|lncRNA|chr19:19789985:19790531:-	0	-
#Deleted in new
chr19	19790971	19791043	ENSG00000081665.13|ZNF506|pc|chr19:19790971:19791043:-	0	-
#Deleted in new
chr19	19791561	19791731	ENSG00000081665.13|ZNF506|pc|chr19:19791561:19791731:-	0	-
#Deleted in new
chr19	19791561	19792484	ENSG00000081665.13|ZNF506|pc|chr19:19791561:19792484:-	0	-
#Deleted in new
chr19	19792410	19792484	ENSG00000081665.13|ZNF506|pc|chr19:19792410:19792484:-	0	-
#Deleted in new
chr19	19792460	19792484	ENSG00000081665.13|ZNF506|pc|chr19:19792460:19792484:-	0	-
#Split in new
chr19	19794949	19799039	ENSG00000081665.13|ZNF506|pc|chr19:19794949:19799039:-	0	-
#Deleted in new
chr19	19798237	19798479	ENSG00000081665.13|ZNF506|pc|chr19:19798237:19798479:-	0	-
#Deleted in new
chr19	19798788	19799450	ENSG00000081665.13|ZNF506|pc|chr19:19798788:19799450:-	0	-
#Deleted in new
chr19	19820254	19820666	ENSG00000081665.13|ZNF506|pc|chr19:19820254:19820666:-	0	-
#Deleted in new
chr19	19821600	19821692	ENSG00000081665.13|ZNF506|pc|chr19:19821600:19821692:-	0	-
#Deleted in new
chr19	19821600	19821709	ENSG00000081665.13|ZNF506|pc|chr19:19821600:19821709:-	0	-
#Deleted in new
chr19	19821600	19821710	ENSG00000081665.13|ZNF506|pc|chr19:19821600:19821710:-	0	-
#Deleted in new
chr19	19821600	19821716	ENSG00000267581.1|AC011477.4|lncRNA|chr19:19821600:19821716:-	0	-
#Deleted in new
chr19	19821600	19821722	ENSG00000081665.13|ZNF506|pc|chr19:19821600:19821722:-	0	-
#Deleted in new
chr19	19821600	19821723	ENSG00000081665.13|ZNF506|pc|chr19:19821600:19821723:-	0	-
#Deleted in new
chr19	19821600	19821732	ENSG00000081665.13|ZNF506|pc|chr19:19821600:19821732:-	0	-
#Deleted in new
chr19	19821600	19821740	ENSG00000081665.13|ZNF506|pc|chr19:19821600:19821740:-	0	-
#Deleted in new
chr19	19821600	19821749	ENSG00000081665.13|ZNF506|pc|chr19:19821600:19821749:-	0	-
#Deleted in new
chr19	19821600	19821750	ENSG00000081665.13|ZNF506|pc|chr19:19821600:19821750:-	0	-
#Deleted in new
chr19	19821600	19821751	ENSG00000081665.13|ZNF506|pc|chr19:19821600:19821751:-	0	-
#Deleted in new
chr19	198263	198595	ENSG00000282508.1|LINC01002|lncRNA|chr19:198263:198595:-	0	-
#Deleted in new
chr19	19865885	19865999	ENSG00000256771.3|ZNF253|pc|chr19:19865885:19865999:+	0	+
#Deleted in new
chr19	19865904	19865999	ENSG00000256771.3|ZNF253|pc|chr19:19865904:19865999:+	0	+
#Deleted in new
chr19	19865906	19865999	ENSG00000256771.3|ZNF253|pc|chr19:19865906:19865999:+	0	+
#Deleted in new
chr19	19865917	19865999	ENSG00000256771.3|ZNF253|pc|chr19:19865917:19865999:+	0	+
#Deleted in new
chr19	1989400	1989867	ENSG00000267283.1|AC005306.1|lncRNA|chr19:1989400:1989867:+	0	+
#Deleted in new
chr19	19895470	19895847	ENSG00000267565.1|AC011477.3|lncRNA|chr19:19895470:19895847:-	0	-
#Deleted in new
chr19	19900912	19901091	ENSG00000184635.15|ZNF93|pc|chr19:19900912:19901091:+	0	+
#Deleted in new
chr19	19900927	19901091	ENSG00000184635.15|ZNF93|pc|chr19:19900927:19901091:+	0	+
#Deleted in new
chr19	19900945	19901091	ENSG00000184635.15|ZNF93|pc|chr19:19900945:19901091:+	0	+
#Deleted in new
chr19	19900967	19901039	ENSG00000184635.15|ZNF93|pc|chr19:19900967:19901039:+	0	+
#Deleted in new
chr19	19900970	19901091	ENSG00000184635.15|ZNF93|pc|chr19:19900970:19901091:+	0	+
#Deleted in new
chr19	19900982	19901091	ENSG00000184635.15|ZNF93|pc|chr19:19900982:19901091:+	0	+
#Deleted in new
chr19	19901060	19901091	ENSG00000184635.15|ZNF93|pc|chr19:19901060:19901091:+	0	+
#Partially deleted in new
chr19	1990716	1991274	ENSG00000133243.8|BTBD2|pc|chr19:1990716:1991274:-	0	-
#Partially deleted in new
chr19	1990716	1991300	ENSG00000133243.8|BTBD2|pc|chr19:1990716:1991300:-	0	-
#Deleted in new
chr19	19907723	19907816	ENSG00000184635.15|ZNF93|pc|chr19:19907723:19907816:+	0	+
#Deleted in new
chr19	1991876	1992056	ENSG00000133243.8|BTBD2|pc|chr19:1991876:1992056:-	0	-
#Deleted in new
chr1	91992263	91992314	ENSG00000137948.18|BRDT|pc|chr1:91992263:91992314:+	0	+
#Deleted in new
chr19	19926100	19926221	ENSG00000184635.15|ZNF93|pc|chr19:19926100:19926221:+	0	+
#Deleted in new
chr19	19927110	19927272	ENSG00000184635.15|ZNF93|pc|chr19:19927110:19927272:+	0	+
#Deleted in new
chr19	19927110	19927313	ENSG00000184635.15|ZNF93|pc|chr19:19927110:19927313:+	0	+
#Deleted in new
chr19	19932007	19932997	ENSG00000184635.15|ZNF93|pc|chr19:19932007:19932997:+	0	+
#Duplicated in new
chr19	19933181	19933509	ENSG00000184635.15|ZNF93|pc|chr19:19933181:19933509:+	0	+
#Deleted in new
chr19	199375	199611	ENSG00000282508.1|LINC01002|lncRNA|chr19:199375:199611:-	0	-
#Deleted in new
chr19	19956737	19957016	ENSG00000184635.15|ZNF93|pc|chr19:19956737:19957016:+	0	+
#Deleted in new
chr19	19958488	19958554	ENSG00000184635.15|ZNF93|pc|chr19:19958488:19958554:+	0	+
#Deleted in new
chr19	19963118	19963464	ENSG00000184635.15|ZNF93|pc|chr19:19963118:19963464:+	0	+
#Deleted in new
chr19	199834	200049	ENSG00000282508.1|LINC01002|lncRNA|chr19:199834:200049:-	0	-
#Deleted in new
chr19	19997057	19997263	ENSG00000197124.11|ZNF682|pc|chr19:19997057:19997263:-	0	-
#Deleted in new
chr19	20004419	20004747	ENSG00000197124.11|ZNF682|pc|chr19:20004419:20004747:-	0	-
#Deleted in new
chr19	200111	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:200111:201662:-	0	-
#Deleted in new
chr19	20015773	20015837	ENSG00000197124.11|ZNF682|pc|chr19:20015773:20015837:-	0	-
#Deleted in new
chr19	20015773	20015842	ENSG00000197124.11|ZNF682|pc|chr19:20015773:20015842:-	0	-
#Deleted in new
chr19	2002579	2003581	ENSG00000279653.1|AC004678.2|lncRNA|chr19:2002579:2003581:-	0	-
#Deleted in new
chr19	20030707	20030882	ENSG00000197124.11|ZNF682|pc|chr19:20030707:20030882:-	0	-
#Deleted in new
chr19	20030716	20030882	ENSG00000197124.11|ZNF682|pc|chr19:20030716:20030882:-	0	-
#Deleted in new
chr19	20030992	20031113	ENSG00000197124.11|ZNF682|pc|chr19:20030992:20031113:-	0	-
#Deleted in new
chr19	200390	200507	ENSG00000282508.1|LINC01002|lncRNA|chr19:200390:200507:-	0	-
#Deleted in new
chr19	200390	200736	ENSG00000282508.1|LINC01002|lncRNA|chr19:200390:200736:-	0	-
#Deleted in new
chr19	200390	201002	ENSG00000282508.1|LINC01002|lncRNA|chr19:200390:201002:-	0	-
#Deleted in new
chr19	20039172	20039205	ENSG00000197124.11|ZNF682|pc|chr19:20039172:20039205:-	0	-
#Deleted in new
chr19	20039172	20039255	ENSG00000197124.11|ZNF682|pc|chr19:20039172:20039255:-	0	-
#Deleted in new
chr19	20039172	20039276	ENSG00000197124.11|ZNF682|pc|chr19:20039172:20039276:-	0	-
#Deleted in new
chr19	20039342	20039441	ENSG00000197124.11|ZNF682|pc|chr19:20039342:20039441:-	0	-
#Deleted in new
chr19	20039342	20039443	ENSG00000197124.11|ZNF682|pc|chr19:20039342:20039443:-	0	-
#Deleted in new
chr19	20039342	20039450	ENSG00000197124.11|ZNF682|pc|chr19:20039342:20039450:-	0	-
#Deleted in new
chr19	20039342	20039462	ENSG00000197124.11|ZNF682|pc|chr19:20039342:20039462:-	0	-
#Deleted in new
chr19	20039342	20039465	ENSG00000197124.11|ZNF682|pc|chr19:20039342:20039465:-	0	-
#Deleted in new
chr19	20039342	20039506	ENSG00000197124.11|ZNF682|pc|chr19:20039342:20039506:-	0	-
#Deleted in new
chr19	20106947	20107085	ENSG00000213988.10|ZNF90|pc|chr19:20106947:20107085:+	0	+
#Deleted in new
chr19	201196	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:201196:201662:-	0	-
#Deleted in new
chr19	20120823	20121346	ENSG00000213988.10|ZNF90|pc|chr19:20120823:20121346:+	0	+
#Deleted in new
chr19	20121221	20121346	ENSG00000213988.10|ZNF90|pc|chr19:20121221:20121346:+	0	+
#Deleted in new
chr19	201216	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:201216:201662:-	0	-
#Duplicated in new
chr19	20125005	20126166	ENSG00000213988.10|ZNF90|pc|chr19:20125005:20126166:+	0	+
#Deleted in new
chr19	201251	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:201251:201662:-	0	-
#Split in new
chr19	20125544	20125783	ENSG00000267383.6|AC011447.3|lncRNA|chr19:20125544:20125783:-	0	-
#Deleted in new
chr19	20126751	20127018	ENSG00000213988.10|ZNF90|pc|chr19:20126751:20127018:+	0	+
#Deleted in new
chr19	20126751	20127076	ENSG00000213988.10|ZNF90|pc|chr19:20126751:20127076:+	0	+
#Deleted in new
chr19	201346	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:201346:201662:-	0	-
#Deleted in new
chr19	201353	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:201353:201662:-	0	-
#Deleted in new
chr19	201359	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:201359:201662:-	0	-
#Deleted in new
chr19	201361	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:201361:201662:-	0	-
#Deleted in new
chr19	201403	201445	ENSG00000282508.1|LINC01002|lncRNA|chr19:201403:201445:-	0	-
#Deleted in new
chr19	201408	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:201408:201662:-	0	-
#Deleted in new
chr19	201454	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:201454:201662:-	0	-
#Deleted in new
chr19	20150360	20150548	ENSG00000267383.6|AC011447.3|lncRNA|chr19:20150360:20150548:-	0	-
#Deleted in new
chr19	201522	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:201522:201662:-	0	-
#Deleted in new
chr19	201636	201662	ENSG00000282508.1|LINC01002|lncRNA|chr19:201636:201662:-	0	-
#Deleted in new
chr19	20167227	20167360	ENSG00000256229.7|ZNF486|pc|chr19:20167227:20167360:+	0	+
#Deleted in new
chr19	20167273	20167360	ENSG00000256229.7|ZNF486|pc|chr19:20167273:20167360:+	0	+
#Deleted in new
chr19	2017044	2017094	ENSG00000133243.8|BTBD2|pc|chr19:2017044:2017094:-	0	-
#Deleted in new
chr19	2017182	2017300	ENSG00000133243.8|BTBD2|pc|chr19:2017182:2017300:-	0	-
#Deleted in new
chr19	201755	201813	ENSG00000282508.1|LINC01002|lncRNA|chr19:201755:201813:-	0	-
#Deleted in new
chr19	201755	202158	ENSG00000282508.1|LINC01002|lncRNA|chr19:201755:202158:-	0	-
#Deleted in new
chr19	20176099	20176809	ENSG00000267383.6|AC011447.3|lncRNA|chr19:20176099:20176809:-	0	-
#Deleted in new
chr19	20188398	20188776	ENSG00000256229.7|ZNF486|pc|chr19:20188398:20188776:+	0	+
#Deleted in new
chr19	202040	202192	ENSG00000282508.1|LINC01002|lncRNA|chr19:202040:202192:-	0	-
#Split in new
chr19	20207191	20209789	ENSG00000279039.1|AC011447.6|lncRNA|chr19:20207191:20209789:-	0	-
#Deleted in new
chr19	20216145	20217316	ENSG00000267383.6|AC011447.3|lncRNA|chr19:20216145:20217316:-	0	-
#Deleted in new
chr19	20220322	20220419	ENSG00000267383.6|AC011447.3|lncRNA|chr19:20220322:20220419:-	0	-
#Partially deleted in new
chr19	20220596	20222186	ENSG00000280079.1|AC011447.7|lncRNA|chr19:20220596:20222186:-	0	-
#Deleted in new
chr19	20228009	20228483	ENSG00000267383.6|AC011447.3|lncRNA|chr19:20228009:20228483:-	0	-
#Deleted in new
chr19	20240499	20240637	ENSG00000267383.6|AC011447.3|lncRNA|chr19:20240499:20240637:-	0	-
#Deleted in new
chr19	2028707	2028834	ENSG00000133243.8|BTBD2|pc|chr19:2028707:2028834:-	0	-
#Deleted in new
chr19	20301308	20301387	ENSG00000267383.6|AC011447.3|lncRNA|chr19:20301308:20301387:-	0	-
#Deleted in new
chr19	20321185	20321305	ENSG00000267383.6|AC011447.3|lncRNA|chr19:20321185:20321305:-	0	-
#Deleted in new
chr19	2034750	2034872	ENSG00000133243.8|BTBD2|pc|chr19:2034750:2034872:-	0	-
#Deleted in new
chr19	2034750	2034881	ENSG00000133243.8|BTBD2|pc|chr19:2034750:2034881:-	0	-
#Deleted in new
chr19	203870	204065	ENSG00000282508.1|LINC01002|lncRNA|chr19:203870:204065:-	0	-
#Deleted in new
chr19	203874	204024	ENSG00000282508.1|LINC01002|lncRNA|chr19:203874:204024:-	0	-
#Deleted in new
chr19	203874	204065	ENSG00000282508.1|LINC01002|lncRNA|chr19:203874:204065:-	0	-
#Deleted in new
chr19	203874	204079	ENSG00000282508.1|LINC01002|lncRNA|chr19:203874:204079:-	0	-
#Deleted in new
chr19	203904	204065	ENSG00000282508.1|LINC01002|lncRNA|chr19:203904:204065:-	0	-
#Deleted in new
chr19	203936	204069	ENSG00000282508.1|LINC01002|lncRNA|chr19:203936:204069:-	0	-
#Deleted in new
chr19	203940	204065	ENSG00000282508.1|LINC01002|lncRNA|chr19:203940:204065:-	0	-
#Deleted in new
chr19	203946	203987	ENSG00000282508.1|LINC01002|lncRNA|chr19:203946:203987:-	0	-
#Deleted in new
chr19	203950	204065	ENSG00000282508.1|LINC01002|lncRNA|chr19:203950:204065:-	0	-
#Deleted in new
chr19	203961	204065	ENSG00000282508.1|LINC01002|lncRNA|chr19:203961:204065:-	0	-
#Deleted in new
chr19	203970	203994	ENSG00000282508.1|LINC01002|lncRNA|chr19:203970:203994:-	0	-
#Deleted in new
chr19	203973	204065	ENSG00000282508.1|LINC01002|lncRNA|chr19:203973:204065:-	0	-
#Deleted in new
chr19	203975	204065	ENSG00000282508.1|LINC01002|lncRNA|chr19:203975:204065:-	0	-
#Deleted in new
chr19	204011	204065	ENSG00000282508.1|LINC01002|lncRNA|chr19:204011:204065:-	0	-
#Deleted in new
chr19	204015	204065	ENSG00000282508.1|LINC01002|lncRNA|chr19:204015:204065:-	0	-
#Partially deleted in new
chr1	92042822	92043794	ENSG00000172031.6|EPHX4|pc|chr1:92042822:92043794:+	0	+
#Deleted in new
chr19	20432551	20432711	ENSG00000269043.1|AC008554.1|lncRNA|chr19:20432551:20432711:+	0	+
#Deleted in new
chr19	204817	205076	ENSG00000282508.1|LINC01002|lncRNA|chr19:204817:205076:-	0	-
#Deleted in new
chr19	204833	205076	ENSG00000282508.1|LINC01002|lncRNA|chr19:204833:205076:-	0	-
#Deleted in new
chr19	204843	205076	ENSG00000282508.1|LINC01002|lncRNA|chr19:204843:205076:-	0	-
#Deleted in new
chr19	204920	205076	ENSG00000282508.1|LINC01002|lncRNA|chr19:204920:205076:-	0	-
#Deleted in new
chr19	205169	205227	ENSG00000282508.1|LINC01002|lncRNA|chr19:205169:205227:-	0	-
#Deleted in new
chr19	205169	205327	ENSG00000282508.1|LINC01002|lncRNA|chr19:205169:205327:-	0	-
#Deleted in new
chr19	205169	205411	ENSG00000282508.1|LINC01002|lncRNA|chr19:205169:205411:-	0	-
#Deleted in new
chr19	205169	205459	ENSG00000282508.1|LINC01002|lncRNA|chr19:205169:205459:-	0	-
#Deleted in new
chr19	20528193	20528615	ENSG00000269043.1|AC008554.1|lncRNA|chr19:20528193:20528615:+	0	+
#Deleted in new
chr19	20535824	20536150	ENSG00000237440.8|ZNF737|pc|chr19:20535824:20536150:-	0	-
#Deleted in new
chr19	205454	205589	ENSG00000282508.1|LINC01002|lncRNA|chr19:205454:205589:-	0	-
#Deleted in new
chr19	205454	205598	ENSG00000282508.1|LINC01002|lncRNA|chr19:205454:205598:-	0	-
#Deleted in new
chr19	205454	205606	ENSG00000282508.1|LINC01002|lncRNA|chr19:205454:205606:-	0	-
#Deleted in new
chr19	205454	205946	ENSG00000282508.1|LINC01002|lncRNA|chr19:205454:205946:-	0	-
#Deleted in new
chr19	20551084	20551258	ENSG00000237440.8|ZNF737|pc|chr19:20551084:20551258:-	0	-
#Deleted in new
chr19	20564040	20564138	ENSG00000237440.8|ZNF737|pc|chr19:20564040:20564138:-	0	-
#Deleted in new
chr19	20565637	20565735	ENSG00000237440.8|ZNF737|pc|chr19:20565637:20565735:-	0	-
#Deleted in new
chr19	20565637	20565746	ENSG00000237440.8|ZNF737|pc|chr19:20565637:20565746:-	0	-
#Deleted in new
chr19	20565637	20565779	ENSG00000237440.8|ZNF737|pc|chr19:20565637:20565779:-	0	-
#Deleted in new
chr19	20565637	20565809	ENSG00000237440.8|ZNF737|pc|chr19:20565637:20565809:-	0	-
#Deleted in new
chr19	20580206	20580321	ENSG00000269110.1|AC010636.2|lncRNA|chr19:20580206:20580321:-	0	-
#Deleted in new
chr19	20611558	20611855	ENSG00000268560.1|AC010636.1|lncRNA|chr19:20611558:20611855:+	0	+
#Deleted in new
chr19	20615058	20615389	ENSG00000268560.1|AC010636.1|lncRNA|chr19:20615058:20615389:+	0	+
#Split in new
chr19	20621366	20624364	ENSG00000188171.15|ZNF626|pc|chr19:20621366:20624364:-	0	-
#Partially deleted in new
chr19	20644701	20645448	ENSG00000188171.15|ZNF626|pc|chr19:20644701:20645448:-	0	-
#Deleted in new
chr19	20661443	20661507	ENSG00000188171.15|ZNF626|pc|chr19:20661443:20661507:-	0	-
#Deleted in new
chr19	20661443	20661537	ENSG00000188171.15|ZNF626|pc|chr19:20661443:20661537:-	0	-
#Deleted in new
chr19	20661443	20661583	ENSG00000269110.1|AC010636.2|lncRNA|chr19:20661443:20661583:-	0	-
#Deleted in new
chr19	20661443	20661593	ENSG00000188171.15|ZNF626|pc|chr19:20661443:20661593:-	0	-
#Deleted in new
chr19	20661443	20661596	ENSG00000188171.15|ZNF626|pc|chr19:20661443:20661596:-	0	-
#Partially deleted in new
chr19	2071037	2073424	ENSG00000172081.13|MOB3A|pc|chr19:2071037:2073424:-	0	-
#Partially deleted in new
chr19	2073034	2073424	ENSG00000172081.13|MOB3A|pc|chr19:2073034:2073424:-	0	-
#Partially deleted in new
chr19	2073136	2073424	ENSG00000172081.13|MOB3A|pc|chr19:2073136:2073424:-	0	-
#Deleted in new
chr19	20746922	20755250	ENSG00000268416.1|AC010329.1|lncRNA|chr19:20746922:20755250:-	0	-
#Deleted in new
chr19	20799000	20799393	ENSG00000160229.11|ZNF66|pc|chr19:20799000:20799393:+	0	+
#Deleted in new
chr19	208187	208391	ENSG00000282508.1|LINC01002|lncRNA|chr19:208187:208391:-	0	-
#Deleted in new
chr19	208247	208391	ENSG00000282508.1|LINC01002|lncRNA|chr19:208247:208391:-	0	-
#Deleted in new
chr19	208326	208387	ENSG00000282508.1|LINC01002|lncRNA|chr19:208326:208387:-	0	-
#Deleted in new
chr19	208326	208391	ENSG00000282508.1|LINC01002|lncRNA|chr19:208326:208391:-	0	-
#Partially deleted in new
chr19	2085476	2085652	ENSG00000172081.13|MOB3A|pc|chr19:2085476:2085652:-	0	-
#Deleted in new
chr19	208957	209014	ENSG00000282508.1|LINC01002|lncRNA|chr19:208957:209014:-	0	-
#Deleted in new
chr19	2090074	2090176	ENSG00000172081.13|MOB3A|pc|chr19:2090074:2090176:-	0	-
#Deleted in new
chr1	92090	92240	ENSG00000238009.6|AL627309.1|lncRNA|chr1:92090:92240:-	0	-
#Deleted in new
chr19	209218	209432	ENSG00000282508.1|LINC01002|lncRNA|chr19:209218:209432:-	0	-
#Deleted in new
chr19	209224	209369	ENSG00000282508.1|LINC01002|lncRNA|chr19:209224:209369:-	0	-
#Deleted in new
chr19	209224	209379	ENSG00000282508.1|LINC01002|lncRNA|chr19:209224:209379:-	0	-
#Deleted in new
chr19	209224	209396	ENSG00000282508.1|LINC01002|lncRNA|chr19:209224:209396:-	0	-
#Deleted in new
chr19	20923221	20923403	ENSG00000105750.14|ZNF85|pc|chr19:20923221:20923403:+	0	+
#Deleted in new
chr19	20923252	20923403	ENSG00000105750.14|ZNF85|pc|chr19:20923252:20923403:+	0	+
#Deleted in new
chr19	20923275	20923403	ENSG00000105750.14|ZNF85|pc|chr19:20923275:20923403:+	0	+
#Deleted in new
chr19	20923284	20923403	ENSG00000105750.14|ZNF85|pc|chr19:20923284:20923403:+	0	+
#Deleted in new
chr19	20923287	20923403	ENSG00000105750.14|ZNF85|pc|chr19:20923287:20923403:+	0	+
#Deleted in new
chr19	20923303	20923403	ENSG00000105750.14|ZNF85|pc|chr19:20923303:20923403:+	0	+
#Deleted in new
chr19	20923309	20923416	ENSG00000105750.14|ZNF85|pc|chr19:20923309:20923416:+	0	+
#Deleted in new
chr19	20923400	20923403	ENSG00000105750.14|ZNF85|pc|chr19:20923400:20923403:+	0	+
#Deleted in new
chr19	209235	209316	ENSG00000282508.1|LINC01002|lncRNA|chr19:209235:209316:-	0	-
#Deleted in new
chr19	209235	209370	ENSG00000282508.1|LINC01002|lncRNA|chr19:209235:209370:-	0	-
#Deleted in new
chr19	209235	209604	ENSG00000282508.1|LINC01002|lncRNA|chr19:209235:209604:-	0	-
#Deleted in new
chr19	209235	209644	ENSG00000282508.1|LINC01002|lncRNA|chr19:209235:209644:-	0	-
#Deleted in new
chr19	209235	209654	ENSG00000282508.1|LINC01002|lncRNA|chr19:209235:209654:-	0	-
#Deleted in new
chr19	20926776	20928714	ENSG00000279404.1|AC008739.5|lncRNA|chr19:20926776:20928714:-	0	-
#Deleted in new
chr19	20936591	20936667	ENSG00000105750.14|ZNF85|pc|chr19:20936591:20936667:+	0	+
#Deleted in new
chr19	20936595	20936667	ENSG00000105750.14|ZNF85|pc|chr19:20936595:20936667:+	0	+
#Deleted in new
chr19	20936605	20936667	ENSG00000105750.14|ZNF85|pc|chr19:20936605:20936667:+	0	+
#Deleted in new
chr19	20936663	20937361	ENSG00000105750.14|ZNF85|pc|chr19:20936663:20937361:+	0	+
#Deleted in new
chr19	20942800	20943726	ENSG00000105750.14|ZNF85|pc|chr19:20942800:20943726:+	0	+
#Deleted in new
chr19	20942800	20943977	ENSG00000105750.14|ZNF85|pc|chr19:20942800:20943977:+	0	+
#Deleted in new
chr19	20944251	20944296	ENSG00000105750.14|ZNF85|pc|chr19:20944251:20944296:+	0	+
#Deleted in new
chr19	20945498	20945709	ENSG00000105750.14|ZNF85|pc|chr19:20945498:20945709:+	0	+
#Deleted in new
chr19	20946299	20946340	ENSG00000105750.14|ZNF85|pc|chr19:20946299:20946340:+	0	+
#Deleted in new
chr19	20946299	20946389	ENSG00000105750.14|ZNF85|pc|chr19:20946299:20946389:+	0	+
#Deleted in new
chr19	2095240	2095323	ENSG00000172081.13|MOB3A|pc|chr19:2095240:2095323:-	0	-
#Deleted in new
chr19	20972261	20972517	ENSG00000268326.1|AC008739.1|lncRNA|chr19:20972261:20972517:+	0	+
#Deleted in new
chr19	209768	209866	ENSG00000282508.1|LINC01002|lncRNA|chr19:209768:209866:-	0	-
#Deleted in new
chr19	20982891	20983210	ENSG00000268326.1|AC008739.1|lncRNA|chr19:20982891:20983210:+	0	+
#Deleted in new
chr19	21022788	21022881	ENSG00000118620.12|ZNF430|pc|chr19:21022788:21022881:+	0	+
#Split in new
chr19	21034088	21036802	ENSG00000118620.12|ZNF430|pc|chr19:21034088:21036802:+	0	+
#Deleted in new
chr19	21049504	21049567	ENSG00000118620.12|ZNF430|pc|chr19:21049504:21049567:+	0	+
#Deleted in new
chr19	21053438	21053544	ENSG00000118620.12|ZNF430|pc|chr19:21053438:21053544:+	0	+
#Partially deleted in new
chr19	21058070	21058446	ENSG00000118620.12|ZNF430|pc|chr19:21058070:21058446:+	0	+
#Deleted in new
chr19	21082158	21082348	ENSG00000160352.15|ZNF714|pc|chr19:21082158:21082348:+	0	+
#Deleted in new
chr19	21082173	21082348	ENSG00000160352.15|ZNF714|pc|chr19:21082173:21082348:+	0	+
#Deleted in new
chr19	21082198	21082348	ENSG00000160352.15|ZNF714|pc|chr19:21082198:21082348:+	0	+
#Deleted in new
chr19	21082199	21082348	ENSG00000160352.15|ZNF714|pc|chr19:21082199:21082348:+	0	+
#Deleted in new
chr19	21082202	21082348	ENSG00000160352.15|ZNF714|pc|chr19:21082202:21082348:+	0	+
#Deleted in new
chr19	21082208	21082348	ENSG00000160352.15|ZNF714|pc|chr19:21082208:21082348:+	0	+
#Deleted in new
chr19	21082249	21082348	ENSG00000160352.15|ZNF714|pc|chr19:21082249:21082348:+	0	+
#Deleted in new
chr19	21083977	21084069	ENSG00000160352.15|ZNF714|pc|chr19:21083977:21084069:+	0	+
#Deleted in new
chr19	21084019	21084069	ENSG00000160352.15|ZNF714|pc|chr19:21084019:21084069:+	0	+
#Deleted in new
chr19	21090910	21091758	ENSG00000160352.15|ZNF714|pc|chr19:21090910:21091758:+	0	+
#Deleted in new
chr19	21109622	21109644	ENSG00000160352.15|ZNF714|pc|chr19:21109622:21109644:+	0	+
#Partially deleted in new
chr19	21116806	21123151	ENSG00000160352.15|ZNF714|pc|chr19:21116806:21123151:+	0	+
#Deleted in new
chr19	21124960	21125094	ENSG00000160352.15|ZNF714|pc|chr19:21124960:21125094:+	0	+
#Deleted in new
chr19	21124960	21125270	ENSG00000160352.15|ZNF714|pc|chr19:21124960:21125270:+	0	+
#Deleted in new
chr19	211251	211715	ENSG00000282508.1|LINC01002|lncRNA|chr19:211251:211715:-	0	-
#Deleted in new
chr19	211251	211885	ENSG00000282508.1|LINC01002|lncRNA|chr19:211251:211885:-	0	-
#Partially deleted in new
chr19	21142023	21142186	ENSG00000196705.8|ZNF431|pc|chr19:21142023:21142186:+	0	+
#Partially deleted in new
chr19	21142034	21142186	ENSG00000196705.8|ZNF431|pc|chr19:21142034:21142186:+	0	+
#Partially deleted in new
chr19	21142036	21142186	ENSG00000196705.8|ZNF431|pc|chr19:21142036:21142186:+	0	+
#Partially deleted in new
chr19	21142039	21142186	ENSG00000196705.8|ZNF431|pc|chr19:21142039:21142186:+	0	+
#Deleted in new
chr19	21142076	21142186	ENSG00000196705.8|ZNF431|pc|chr19:21142076:21142186:+	0	+
#Deleted in new
chr19	21143550	21143643	ENSG00000196705.8|ZNF431|pc|chr19:21143550:21143643:+	0	+
#Deleted in new
chr19	21151078	21151198	ENSG00000196705.8|ZNF431|pc|chr19:21151078:21151198:+	0	+
#Deleted in new
chr19	21169802	21169882	ENSG00000196705.8|ZNF431|pc|chr19:21169802:21169882:+	0	+
#Deleted in new
chr19	21175452	21175474	ENSG00000196705.8|ZNF431|pc|chr19:21175452:21175474:+	0	+
#Deleted in new
chr19	211761	211866	ENSG00000282508.1|LINC01002|lncRNA|chr19:211761:211866:-	0	-
#Deleted in new
chr19	211761	211885	ENSG00000282508.1|LINC01002|lncRNA|chr19:211761:211885:-	0	-
#Split in new
chr19	21182622	21196053	ENSG00000196705.8|ZNF431|pc|chr19:21182622:21196053:+	0	+
#Deleted in new
chr19	21185943	21186287	ENSG00000196705.8|ZNF431|pc|chr19:21185943:21186287:+	0	+
#Deleted in new
chr19	21189864	21189998	ENSG00000196705.8|ZNF431|pc|chr19:21189864:21189998:+	0	+
#Deleted in new
chr19	21189864	21190226	ENSG00000196705.8|ZNF431|pc|chr19:21189864:21190226:+	0	+
#Deleted in new
chr19	21189864	21190231	ENSG00000196705.8|ZNF431|pc|chr19:21189864:21190231:+	0	+
#Deleted in new
chr19	212017	212219	ENSG00000282508.1|LINC01002|lncRNA|chr19:212017:212219:-	0	-
#Duplicated in new
chr19	21294395	21294739	ENSG00000182141.10|ZNF708|pc|chr19:21294395:21294739:-	0	-
#Deleted in new
chr19	21306817	21306941	ENSG00000182141.10|ZNF708|pc|chr19:21306817:21306941:-	0	-
#Deleted in new
chr19	21327959	21328141	ENSG00000182141.10|ZNF708|pc|chr19:21327959:21328141:-	0	-
#Deleted in new
chr19	21329209	21329336	ENSG00000182141.10|ZNF708|pc|chr19:21329209:21329336:-	0	-
#Deleted in new
chr19	21329209	21329382	ENSG00000182141.10|ZNF708|pc|chr19:21329209:21329382:-	0	-
#Deleted in new
chr19	21329209	21329410	ENSG00000182141.10|ZNF708|pc|chr19:21329209:21329410:-	0	-
#Deleted in new
chr19	21329209	21329425	ENSG00000182141.10|ZNF708|pc|chr19:21329209:21329425:-	0	-
#Deleted in new
chr19	2133396	2133484	ENSG00000065000.15|AP3D1|pc|chr19:2133396:2133484:-	0	-
#Deleted in new
chr19	21358929	21359143	ENSG00000172687.13|ZNF738|pc|chr19:21358929:21359143:+	0	+
#Deleted in new
chr19	21358991	21359143	ENSG00000172687.13|ZNF738|pc|chr19:21358991:21359143:+	0	+
#Deleted in new
chr19	21359010	21359143	ENSG00000172687.13|ZNF738|pc|chr19:21359010:21359143:+	0	+
#Deleted in new
chr19	21359020	21359143	ENSG00000172687.13|ZNF738|pc|chr19:21359020:21359143:+	0	+
#Deleted in new
chr19	21359029	21359143	ENSG00000172687.13|ZNF738|pc|chr19:21359029:21359143:+	0	+
#Deleted in new
chr19	21360474	21360596	ENSG00000172687.13|ZNF738|pc|chr19:21360474:21360596:+	0	+
#Deleted in new
chr19	21361765	21361858	ENSG00000172687.13|ZNF738|pc|chr19:21361765:21361858:+	0	+
#Deleted in new
chr19	21371963	21372842	ENSG00000172687.13|ZNF738|pc|chr19:21371963:21372842:+	0	+
#Partially deleted in new
chr19	21377388	21379300	ENSG00000172687.13|ZNF738|pc|chr19:21377388:21379300:+	0	+
#Deleted in new
chr19	21378628	21379302	ENSG00000172687.13|ZNF738|pc|chr19:21378628:21379302:+	0	+
#Deleted in new
chr19	21397118	21397267	ENSG00000196268.11|ZNF493|pc|chr19:21397118:21397267:+	0	+
#Deleted in new
chr19	21397128	21397267	ENSG00000196268.11|ZNF493|pc|chr19:21397128:21397267:+	0	+
#Deleted in new
chr19	21397132	21397267	ENSG00000196268.11|ZNF493|pc|chr19:21397132:21397267:+	0	+
#Deleted in new
chr19	21397132	21397422	ENSG00000196268.11|ZNF493|pc|chr19:21397132:21397422:+	0	+
#Deleted in new
chr19	21397155	21397267	ENSG00000196268.11|ZNF493|pc|chr19:21397155:21397267:+	0	+
#Deleted in new
chr19	21397165	21398934	ENSG00000196268.11|ZNF493|pc|chr19:21397165:21398934:+	0	+
#Deleted in new
chr19	21407472	21408799	ENSG00000196268.11|ZNF493|pc|chr19:21407472:21408799:+	0	+
#Deleted in new
chr19	21411939	21414599	ENSG00000196268.11|ZNF493|pc|chr19:21411939:21414599:+	0	+
#Deleted in new
chr19	21413465	21413508	ENSG00000196268.11|ZNF493|pc|chr19:21413465:21413508:+	0	+
#Deleted in new
chr19	21413465	21414643	ENSG00000196268.11|ZNF493|pc|chr19:21413465:21414643:+	0	+
#Duplicated in new
chr19	21422912	21423040	ENSG00000196268.11|ZNF493|pc|chr19:21422912:21423040:+	0	+
#Deleted in new
chr19	214323	214451	ENSG00000282508.1|LINC01002|lncRNA|chr19:214323:214451:-	0	-
#Deleted in new
chr19	21444240	21444423	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21444240:21444423:-	0	-
#Partially deleted in new
chr19	21452039	21456588	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21452039:21456588:-	0	-
#Deleted in new
chr19	21453025	21453279	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21453025:21453279:-	0	-
#Deleted in new
chr19	21453195	21453777	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21453195:21453777:-	0	-
#Deleted in new
chr19	21453549	21453777	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21453549:21453777:-	0	-
#Deleted in new
chr19	21454382	21454472	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21454382:21454472:-	0	-
#Deleted in new
chr19	21455330	21455604	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21455330:21455604:-	0	-
#Deleted in new
chr19	21456460	21456588	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21456460:21456588:-	0	-
#Deleted in new
chr19	21463743	21463872	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21463743:21463872:-	0	-
#Deleted in new
chr19	21463743	21463873	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21463743:21463873:-	0	-
#Deleted in new
chr19	21463743	21463880	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21463743:21463880:-	0	-
#Deleted in new
chr19	21463743	21463884	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21463743:21463884:-	0	-
#Deleted in new
chr19	21463743	21463897	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21463743:21463897:-	0	-
#Deleted in new
chr19	21463743	21463908	ENSG00000268119.5|AC010615.2|lncRNA|chr19:21463743:21463908:-	0	-
#Deleted in new
chr19	21483373	21483531	ENSG00000268658.5|LINC00664|lncRNA|chr19:21483373:21483531:+	0	+
#Deleted in new
chr19	21483714	21484006	ENSG00000268658.5|LINC00664|lncRNA|chr19:21483714:21484006:+	0	+
#Deleted in new
chr19	21485576	21485666	ENSG00000268658.5|LINC00664|lncRNA|chr19:21485576:21485666:+	0	+
#Deleted in new
chr19	21486104	21486153	ENSG00000268658.5|LINC00664|lncRNA|chr19:21486104:21486153:+	0	+
#Deleted in new
chr19	21488310	21488456	ENSG00000268658.5|LINC00664|lncRNA|chr19:21488310:21488456:+	0	+
#Deleted in new
chr19	21489664	21489770	ENSG00000268658.5|LINC00664|lncRNA|chr19:21489664:21489770:+	0	+
#Deleted in new
chr19	21489664	21489770	ENSG00000269237.1|AC010615.4|pc|chr19:21489664:21489770:+	0	+
#Deleted in new
chr19	21490402	21490514	ENSG00000268658.5|LINC00664|lncRNA|chr19:21490402:21490514:+	0	+
#Deleted in new
chr19	21490402	21490514	ENSG00000269237.1|AC010615.4|pc|chr19:21490402:21490514:+	0	+
#Deleted in new
chr19	21490800	21490877	ENSG00000268658.5|LINC00664|lncRNA|chr19:21490800:21490877:+	0	+
#Deleted in new
chr19	21490988	21491102	ENSG00000268658.5|LINC00664|lncRNA|chr19:21490988:21491102:+	0	+
#Deleted in new
chr19	21491208	21491266	ENSG00000269237.1|AC010615.4|pc|chr19:21491208:21491266:+	0	+
#Deleted in new
chr19	21491208	21491311	ENSG00000268658.5|LINC00664|lncRNA|chr19:21491208:21491311:+	0	+
#Deleted in new
chr19	21491213	21491311	ENSG00000268658.5|LINC00664|lncRNA|chr19:21491213:21491311:+	0	+
#Deleted in new
chr19	21493265	21493847	ENSG00000268658.5|LINC00664|lncRNA|chr19:21493265:21493847:+	0	+
#Deleted in new
chr19	21494119	21494331	ENSG00000268658.5|LINC00664|lncRNA|chr19:21494119:21494331:+	0	+
#Deleted in new
chr19	21494284	21494331	ENSG00000268658.5|LINC00664|lncRNA|chr19:21494284:21494331:+	0	+
#Deleted in new
chr19	21495093	21495207	ENSG00000268658.5|LINC00664|lncRNA|chr19:21495093:21495207:+	0	+
#Deleted in new
chr19	21496651	21496722	ENSG00000268658.5|LINC00664|lncRNA|chr19:21496651:21496722:+	0	+
#Deleted in new
chr19	21496681	21496722	ENSG00000197013.9|ZNF429|pc|chr19:21496681:21496722:+	0	+
#Deleted in new
chr19	21498198	21498349	ENSG00000197013.9|ZNF429|pc|chr19:21498198:21498349:+	0	+
#Deleted in new
chr19	21498198	21498349	ENSG00000268658.5|LINC00664|lncRNA|chr19:21498198:21498349:+	0	+
#Deleted in new
chr19	21498198	21499298	ENSG00000268658.5|LINC00664|lncRNA|chr19:21498198:21499298:+	0	+
#Deleted in new
chr19	21498198	21499893	ENSG00000268658.5|LINC00664|lncRNA|chr19:21498198:21499893:+	0	+
#Deleted in new
chr19	21501270	21503238	ENSG00000268658.5|LINC00664|lncRNA|chr19:21501270:21503238:+	0	+
#Deleted in new
chr19	21505563	21505774	ENSG00000197013.9|ZNF429|pc|chr19:21505563:21505774:+	0	+
#Deleted in new
chr19	21505603	21505774	ENSG00000197013.9|ZNF429|pc|chr19:21505603:21505774:+	0	+
#Deleted in new
chr19	21505612	21506080	ENSG00000197013.9|ZNF429|pc|chr19:21505612:21506080:+	0	+
#Deleted in new
chr19	21505640	21505774	ENSG00000197013.9|ZNF429|pc|chr19:21505640:21505774:+	0	+
#Deleted in new
chr19	21505660	21505774	ENSG00000197013.9|ZNF429|pc|chr19:21505660:21505774:+	0	+
#Deleted in new
chr19	21505698	21506080	ENSG00000197013.9|ZNF429|pc|chr19:21505698:21506080:+	0	+
#Deleted in new
chr19	21505984	21506080	ENSG00000197013.9|ZNF429|pc|chr19:21505984:21506080:+	0	+
#Deleted in new
chr1	92150606	92150882	ENSG00000284413.2|BTBD8|pc|chr1:92150606:92150882:+	0	+
#Deleted in new
chr19	21507519	21507664	ENSG00000197013.9|ZNF429|pc|chr19:21507519:21507664:+	0	+
#Deleted in new
chr19	21507519	21507675	ENSG00000197013.9|ZNF429|pc|chr19:21507519:21507675:+	0	+
#Deleted in new
chr19	21518574	21518988	ENSG00000197013.9|ZNF429|pc|chr19:21518574:21518988:+	0	+
#Deleted in new
chr19	21529083	21529147	ENSG00000197013.9|ZNF429|pc|chr19:21529083:21529147:+	0	+
#Deleted in new
chr19	21529083	21529279	ENSG00000197013.9|ZNF429|pc|chr19:21529083:21529279:+	0	+
#Deleted in new
chr19	21541763	21541886	ENSG00000197013.9|ZNF429|pc|chr19:21541763:21541886:+	0	+
#Deleted in new
chr19	21553916	21553954	ENSG00000197013.9|ZNF429|pc|chr19:21553916:21553954:+	0	+
#Deleted in new
chr19	21554639	21554952	ENSG00000268081.1|AC123912.1|lncRNA|chr19:21554639:21554952:-	0	-
#Deleted in new
chr19	21554909	21555397	ENSG00000197013.9|ZNF429|pc|chr19:21554909:21555397:+	0	+
#Deleted in new
chr19	21554909	21556270	ENSG00000197013.9|ZNF429|pc|chr19:21554909:21556270:+	0	+
#Deleted in new
chr19	21569103	21569237	ENSG00000268081.1|AC123912.1|lncRNA|chr19:21569103:21569237:-	0	-
#Deleted in new
chr19	21570821	21571539	ENSG00000268555.1|AC123912.4|lncRNA|chr19:21570821:21571539:-	0	-
#Deleted in new
chr19	21586862	21587322	ENSG00000268555.1|AC123912.4|lncRNA|chr19:21586862:21587322:-	0	-
#Partially deleted in new
chr19	21587431	21587611	ENSG00000268240.1|AC123912.2|lncRNA|chr19:21587431:21587611:-	0	-
#Deleted in new
chr19	21591777	21594006	ENSG00000268240.1|AC123912.2|lncRNA|chr19:21591777:21594006:-	0	-
#Deleted in new
chr19	21593684	21593918	ENSG00000268240.1|AC123912.2|lncRNA|chr19:21593684:21593918:-	0	-
#Deleted in new
chr19	21594425	21594628	ENSG00000268240.1|AC123912.2|lncRNA|chr19:21594425:21594628:-	0	-
#Deleted in new
chr19	2164355	2164465	ENSG00000065000.15|AP3D1|pc|chr19:2164355:2164465:-	0	-
#Deleted in new
chr19	21743077	21743223	ENSG00000197020.10|ZNF100|pc|chr19:21743077:21743223:-	0	-
#Deleted in new
chr19	21753192	21753573	ENSG00000197020.10|ZNF100|pc|chr19:21753192:21753573:-	0	-
#Deleted in new
chr19	21765693	21765776	ENSG00000197020.10|ZNF100|pc|chr19:21765693:21765776:-	0	-
#Deleted in new
chr19	21765693	21765783	ENSG00000197020.10|ZNF100|pc|chr19:21765693:21765783:-	0	-
#Deleted in new
chr19	21765693	21765786	ENSG00000197020.10|ZNF100|pc|chr19:21765693:21765786:-	0	-
#Deleted in new
chr19	21767423	21767498	ENSG00000197020.10|ZNF100|pc|chr19:21767423:21767498:-	0	-
#Deleted in new
chr19	21767426	21767549	ENSG00000197020.10|ZNF100|pc|chr19:21767426:21767549:-	0	-
#Deleted in new
chr19	21767426	21767628	ENSG00000197020.10|ZNF100|pc|chr19:21767426:21767628:-	0	-
#Deleted in new
chr19	21768771	21769127	ENSG00000268184.1|AC092364.1|lncRNA|chr19:21768771:21769127:-	0	-
#Deleted in new
chr19	21788879	21789100	ENSG00000268184.1|AC092364.1|lncRNA|chr19:21788879:21789100:-	0	-
#Deleted in new
chr19	21793516	21793631	ENSG00000268184.1|AC092364.1|lncRNA|chr19:21793516:21793631:-	0	-
#Deleted in new
chr19	21793516	21793860	ENSG00000268184.1|AC092364.1|lncRNA|chr19:21793516:21793860:-	0	-
#Duplicated in new
chr19	21809478	21809807	ENSG00000198521.11|ZNF43|pc|chr19:21809478:21809807:-	0	-
#Deleted in new
chr19	21812012	21812056	ENSG00000198521.11|ZNF43|pc|chr19:21812012:21812056:-	0	-
#Deleted in new
chr19	21836035	21836187	ENSG00000198521.11|ZNF43|pc|chr19:21836035:21836187:-	0	-
#Deleted in new
chr19	21836035	21836208	ENSG00000198521.11|ZNF43|pc|chr19:21836035:21836208:-	0	-
#Deleted in new
chr19	21837853	21838034	ENSG00000198521.11|ZNF43|pc|chr19:21837853:21838034:-	0	-
#Deleted in new
chr19	21838838	21838947	ENSG00000198521.11|ZNF43|pc|chr19:21838838:21838947:-	0	-
#Deleted in new
chr19	21839596	21841647	ENSG00000198521.11|ZNF43|pc|chr19:21839596:21841647:-	0	-
#Deleted in new
chr19	21839808	21840086	ENSG00000198521.11|ZNF43|pc|chr19:21839808:21840086:-	0	-
#Deleted in new
chr19	21843144	21843326	ENSG00000198521.11|ZNF43|pc|chr19:21843144:21843326:-	0	-
#Deleted in new
chr19	21843187	21843326	ENSG00000198521.11|ZNF43|pc|chr19:21843187:21843326:-	0	-
#Deleted in new
chr19	21843319	21843326	ENSG00000198521.11|ZNF43|pc|chr19:21843319:21843326:-	0	-
#Deleted in new
chr19	21845391	21845506	ENSG00000198521.11|ZNF43|pc|chr19:21845391:21845506:-	0	-
#Deleted in new
chr19	21845429	21845506	ENSG00000198521.11|ZNF43|pc|chr19:21845429:21845506:-	0	-
#Deleted in new
chr19	21849913	21849978	ENSG00000198521.11|ZNF43|pc|chr19:21849913:21849978:-	0	-
#Deleted in new
chr19	21850937	21851027	ENSG00000198521.11|ZNF43|pc|chr19:21850937:21851027:-	0	-
#Deleted in new
chr19	21850937	21851162	ENSG00000198521.11|ZNF43|pc|chr19:21850937:21851162:-	0	-
#Deleted in new
chr19	21851162	21851360	ENSG00000198521.11|ZNF43|pc|chr19:21851162:21851360:-	0	-
#Deleted in new
chr19	2188196	2188289	ENSG00000104885.17|DOT1L|pc|chr19:2188196:2188289:+	0	+
#Deleted in new
chr19	218834	218917	ENSG00000282508.1|LINC01002|lncRNA|chr19:218834:218917:-	0	-
#Deleted in new
chr1	92189236	92189645	ENSG00000273487.1|AC104836.2|lncRNA|chr1:92189236:92189645:+	0	+
#Deleted in new
chr19	21932957	21933237	ENSG00000160321.14|ZNF208|pc|chr19:21932957:21933237:-	0	-
#Deleted in new
chr19	21965707	21968529	ENSG00000279377.1|AC003973.3|lncRNA|chr19:21965707:21968529:-	0	-
#Deleted in new
chr19	21991438	21991737	ENSG00000160321.14|ZNF208|pc|chr19:21991438:21991737:-	0	-
#Deleted in new
chr19	22009487	22009581	ENSG00000160321.14|ZNF208|pc|chr19:22009487:22009581:-	0	-
#Deleted in new
chr19	22010791	22010919	ENSG00000160321.14|ZNF208|pc|chr19:22010791:22010919:-	0	-
#Deleted in new
chr19	22010791	22010943	ENSG00000160321.14|ZNF208|pc|chr19:22010791:22010943:-	0	-
#Deleted in new
chr19	22010791	22010949	ENSG00000160321.14|ZNF208|pc|chr19:22010791:22010949:-	0	-
#Deleted in new
chr19	22017958	22018261	ENSG00000269504.1|AC003973.2|lncRNA|chr19:22017958:22018261:-	0	-
#Deleted in new
chr19	22022083	22022284	ENSG00000269504.1|AC003973.2|lncRNA|chr19:22022083:22022284:-	0	-
#Deleted in new
chr19	22022471	22022599	ENSG00000269504.1|AC003973.2|lncRNA|chr19:22022471:22022599:-	0	-
#Deleted in new
chr19	22026235	22026345	ENSG00000269504.1|AC003973.2|lncRNA|chr19:22026235:22026345:-	0	-
#Deleted in new
chr19	22027198	22027344	ENSG00000269504.1|AC003973.2|lncRNA|chr19:22027198:22027344:-	0	-
#Deleted in new
chr19	22034672	22034797	ENSG00000269504.1|AC003973.2|lncRNA|chr19:22034672:22034797:-	0	-
#Deleted in new
chr19	22034880	22034998	ENSG00000269504.1|AC003973.2|lncRNA|chr19:22034880:22034998:-	0	-
#Deleted in new
chr19	22035097	22035209	ENSG00000269504.1|AC003973.2|lncRNA|chr19:22035097:22035209:-	0	-
#Deleted in new
chr19	22036164	22036315	ENSG00000269504.1|AC003973.2|lncRNA|chr19:22036164:22036315:-	0	-
#Deleted in new
chr19	22043499	22043525	ENSG00000269199.1|AC003973.1|lncRNA|chr19:22043499:22043525:-	0	-
#Deleted in new
chr19	22045878	22045985	ENSG00000269199.1|AC003973.1|lncRNA|chr19:22045878:22045985:-	0	-
#Deleted in new
chr19	22046090	22046312	ENSG00000269199.1|AC003973.1|lncRNA|chr19:22046090:22046312:-	0	-
#Deleted in new
chr19	22049814	22050005	ENSG00000269199.1|AC003973.1|lncRNA|chr19:22049814:22050005:-	0	-
#Deleted in new
chr19	22052451	22052635	ENSG00000197134.11|ZNF257|pc|chr19:22052451:22052635:+	0	+
#Deleted in new
chr19	22052483	22052635	ENSG00000197134.11|ZNF257|pc|chr19:22052483:22052635:+	0	+
#Deleted in new
chr19	22052488	22052635	ENSG00000197134.11|ZNF257|pc|chr19:22052488:22052635:+	0	+
#Deleted in new
chr19	22052508	22052635	ENSG00000197134.11|ZNF257|pc|chr19:22052508:22052635:+	0	+
#Deleted in new
chr19	22052523	22052635	ENSG00000197134.11|ZNF257|pc|chr19:22052523:22052635:+	0	+
#Deleted in new
chr19	22052535	22052635	ENSG00000197134.11|ZNF257|pc|chr19:22052535:22052635:+	0	+
#Deleted in new
chr19	22060507	22060628	ENSG00000197134.11|ZNF257|pc|chr19:22060507:22060628:+	0	+
#Deleted in new
chr19	22064078	22064332	ENSG00000197134.11|ZNF257|pc|chr19:22064078:22064332:+	0	+
#Deleted in new
chr19	22074371	22074553	ENSG00000197134.11|ZNF257|pc|chr19:22074371:22074553:+	0	+
#Deleted in new
chr19	22075369	22075865	ENSG00000197134.11|ZNF257|pc|chr19:22075369:22075865:+	0	+
#Deleted in new
chr19	22087530	22087595	ENSG00000197134.11|ZNF257|pc|chr19:22087530:22087595:+	0	+
#Deleted in new
chr19	221140	221199	ENSG00000282508.1|LINC01002|lncRNA|chr19:221140:221199:-	0	-
#Deleted in new
chr19	221140	221205	ENSG00000282508.1|LINC01002|lncRNA|chr19:221140:221205:-	0	-
#Deleted in new
chr19	221140	221504	ENSG00000282508.1|LINC01002|lncRNA|chr19:221140:221504:-	0	-
#Partially deleted in new
chr19	2212028	2214694	ENSG00000267122.1|AC004490.1|lncRNA|chr19:2212028:2214694:-	0	-
#Deleted in new
chr19	2212236	2212461	ENSG00000104885.17|DOT1L|pc|chr19:2212236:2212461:+	0	+
#Deleted in new
chr19	2215457	2215867	ENSG00000104885.17|DOT1L|pc|chr19:2215457:2215867:+	0	+
#Deleted in new
chr19	2215493	2215565	ENSG00000267122.1|AC004490.1|lncRNA|chr19:2215493:2215565:-	0	-
#Deleted in new
chr19	22243253	22245347	ENSG00000267872.1|AC073539.1|lncRNA|chr19:22243253:22245347:-	0	-
#Deleted in new
chr19	22259692	22259791	ENSG00000268597.1|AC073539.3|lncRNA|chr19:22259692:22259791:+	0	+
#Deleted in new
chr19	22261048	22261335	ENSG00000268597.1|AC073539.3|lncRNA|chr19:22261048:22261335:+	0	+
#Deleted in new
chr19	22286407	22286555	ENSG00000196350.8|ZNF729|pc|chr19:22286407:22286555:+	0	+
#Deleted in new
chr1	92229	92240	ENSG00000238009.6|AL627309.1|lncRNA|chr1:92229:92240:-	0	-
#Partially deleted in new
chr19	2233530	2233832	ENSG00000104886.11|PLEKHJ1|pc|chr19:2233530:2233832:-	0	-
#Partially deleted in new
chr19	2234149	2235990	ENSG00000104886.11|PLEKHJ1|pc|chr19:2234149:2235990:-	0	-
#Partially deleted in new
chr19	2235462	2235828	ENSG00000104886.11|PLEKHJ1|pc|chr19:2235462:2235828:-	0	-
#Deleted in new
chr19	2237294	2237704	ENSG00000104886.11|PLEKHJ1|pc|chr19:2237294:2237704:-	0	-
#Deleted in new
chr19	2237793	2237894	ENSG00000104897.9|SF3A2|pc|chr19:2237793:2237894:+	0	+
#Deleted in new
chr19	223912	224048	ENSG00000282508.1|LINC01002|lncRNA|chr19:223912:224048:-	0	-
#Deleted in new
chr19	223937	224007	ENSG00000282508.1|LINC01002|lncRNA|chr19:223937:224007:-	0	-
#Deleted in new
chr19	223966	224048	ENSG00000282508.1|LINC01002|lncRNA|chr19:223966:224048:-	0	-
#Deleted in new
chr19	224014	224048	ENSG00000282508.1|LINC01002|lncRNA|chr19:224014:224048:-	0	-
#Duplicated in new
chr19	22402381	22402564	ENSG00000197360.9|ZNF98|pc|chr19:22402381:22402564:-	0	-
#Deleted in new
chr19	22422194	22422346	ENSG00000197360.9|ZNF98|pc|chr19:22422194:22422346:-	0	-
#Deleted in new
chr19	22422194	22422354	ENSG00000197360.9|ZNF98|pc|chr19:22422194:22422354:-	0	-
#Deleted in new
chr19	22422246	22422357	ENSG00000197360.9|ZNF98|pc|chr19:22422246:22422357:-	0	-
#Deleted in new
chr19	22422512	22422551	ENSG00000269796.1|AC011516.1|lncRNA|chr19:22422512:22422551:+	0	+
#Deleted in new
chr19	22425904	22426045	ENSG00000269796.1|AC011516.1|lncRNA|chr19:22425904:22426045:+	0	+
#Deleted in new
chr19	22435661	22436006	ENSG00000197360.9|ZNF98|pc|chr19:22435661:22436006:-	0	-
#Partially deleted in new
chr19	2244732	2245186	ENSG00000104897.9|SF3A2|pc|chr19:2244732:2245186:+	0	+
#Deleted in new
chr19	22455987	22456459	ENSG00000270947.1|AC025811.1|lncRNA|chr19:22455987:22456459:+	0	+
#Partially deleted in new
chr1	92247877	92248408	ENSG00000174842.16|GLMN|pc|chr1:92247877:92248408:-	0	-
#Deleted in new
chr19	22525307	22527949	ENSG00000260599.1|AC011467.1|lncRNA|chr19:22525307:22527949:-	0	-
#Duplicated in new
chr19	22533098	22533412	ENSG00000269364.1|LINC01233|lncRNA|chr19:22533098:22533412:+	0	+
#Deleted in new
chr19	22623856	22623971	ENSG00000268038.1|LINC01785|lncRNA|chr19:22623856:22623971:-	0	-
#Deleted in new
chr19	22634323	22634474	ENSG00000229676.2|ZNF492|pc|chr19:22634323:22634474:+	0	+
#Partially deleted in new
chr1	92266539	92266593	ENSG00000174842.16|GLMN|pc|chr1:92266539:92266593:-	0	-
#Deleted in new
chr19	22671353	22671458	ENSG00000268981.5|AC024563.1|lncRNA|chr19:22671353:22671458:-	0	-
#Deleted in new
chr19	2268486	2268872	ENSG00000167476.10|JSRP1|pc|chr19:2268486:2268872:-	0	-
#Deleted in new
chr19	22698119	22698371	ENSG00000268981.5|AC024563.1|lncRNA|chr19:22698119:22698371:-	0	-
#Deleted in new
chr19	2270290	2270676	ENSG00000104904.12|OAZ1|pc|chr19:2270290:2270676:+	0	+
#Deleted in new
chr19	22714451	22714562	ENSG00000268981.5|AC024563.1|lncRNA|chr19:22714451:22714562:-	0	-
#Deleted in new
chr19	22716762	22716818	ENSG00000268981.5|AC024563.1|lncRNA|chr19:22716762:22716818:-	0	-
#Deleted in new
chr19	22716762	22716991	ENSG00000268981.5|AC024563.1|lncRNA|chr19:22716762:22716991:-	0	-
#Partially deleted in new
chr19	2272523	2272820	ENSG00000104904.12|OAZ1|pc|chr19:2272523:2272820:+	0	+
#Deleted in new
chr19	2274621	2276489	ENSG00000188305.5|C19orf35|pc|chr19:2274621:2276489:-	0	-
#Deleted in new
chr19	22769916	22769982	ENSG00000213973.8|ZNF99|pc|chr19:22769916:22769982:-	0	-
#Deleted in new
chr19	2278583	2279113	ENSG00000188305.5|C19orf35|pc|chr19:2278583:2279113:-	0	-
#Deleted in new
chr19	2280849	2280935	ENSG00000188305.5|C19orf35|pc|chr19:2280849:2280935:-	0	-
#Deleted in new
chr19	2282086	2282176	ENSG00000188305.5|C19orf35|pc|chr19:2282086:2282176:-	0	-
#Deleted in new
chr19	22907085	22907239	ENSG00000268296.1|AC022145.1|lncRNA|chr19:22907085:22907239:-	0	-
#Deleted in new
chr19	22910893	22910957	ENSG00000268296.1|AC022145.1|lncRNA|chr19:22910893:22910957:-	0	-
#Deleted in new
chr19	22914124	22914289	ENSG00000268296.1|AC022145.1|lncRNA|chr19:22914124:22914289:-	0	-
#Deleted in new
chr19	22985654	22985831	ENSG00000269067.1|ZNF728|pc|chr19:22985654:22985831:-	0	-
#Deleted in new
chr19	23003027	23003176	ENSG00000269067.1|ZNF728|pc|chr19:23003027:23003176:-	0	-
#Deleted in new
chr19	23015074	23015343	ENSG00000261558.1|LINC01859|lncRNA|chr19:23015074:23015343:-	0	-
#Deleted in new
chr19	23016120	23016331	ENSG00000261558.1|LINC01859|lncRNA|chr19:23016120:23016331:-	0	-
#Deleted in new
chr19	23017717	23017909	ENSG00000261558.1|LINC01859|lncRNA|chr19:23017717:23017909:-	0	-
#Deleted in new
chr19	23023345	23023697	ENSG00000261558.1|LINC01859|lncRNA|chr19:23023345:23023697:-	0	-
#Deleted in new
chr19	23046957	23047096	ENSG00000261615.6|LINC01858|lncRNA|chr19:23046957:23047096:-	0	-
#Deleted in new
chr19	23054822	23055330	ENSG00000261615.6|LINC01858|lncRNA|chr19:23054822:23055330:-	0	-
#Deleted in new
chr19	23055481	23055790	ENSG00000261615.6|LINC01858|lncRNA|chr19:23055481:23055790:-	0	-
#Deleted in new
chr19	23056302	23056409	ENSG00000261615.6|LINC01858|lncRNA|chr19:23056302:23056409:-	0	-
#Deleted in new
chr19	23057011	23057220	ENSG00000261615.6|LINC01858|lncRNA|chr19:23057011:23057220:-	0	-
#Deleted in new
chr19	23058464	23058579	ENSG00000261615.6|LINC01858|lncRNA|chr19:23058464:23058579:-	0	-
#Deleted in new
chr19	23060173	23060318	ENSG00000261615.6|LINC01858|lncRNA|chr19:23060173:23060318:-	0	-
#Deleted in new
chr19	23060646	23060998	ENSG00000261615.6|LINC01858|lncRNA|chr19:23060646:23060998:-	0	-
#Deleted in new
chr19	23061172	23061265	ENSG00000261615.6|LINC01858|lncRNA|chr19:23061172:23061265:-	0	-
#Deleted in new
chr19	23061610	23061752	ENSG00000261615.6|LINC01858|lncRNA|chr19:23061610:23061752:-	0	-
#Deleted in new
chr19	23068472	23068564	ENSG00000269543.5|AC074135.2|lncRNA|chr19:23068472:23068564:-	0	-
#Deleted in new
chr19	23069248	23069473	ENSG00000269543.5|AC074135.2|lncRNA|chr19:23069248:23069473:-	0	-
#Deleted in new
chr19	23069334	23069473	ENSG00000269543.5|AC074135.2|lncRNA|chr19:23069334:23069473:-	0	-
#Deleted in new
chr19	23070420	23070577	ENSG00000269543.5|AC074135.2|lncRNA|chr19:23070420:23070577:-	0	-
#Deleted in new
chr19	23071320	23071442	ENSG00000269543.5|AC074135.2|lncRNA|chr19:23071320:23071442:-	0	-
#Deleted in new
chr19	23071320	23071476	ENSG00000269543.5|AC074135.2|lncRNA|chr19:23071320:23071476:-	0	-
#Deleted in new
chr19	23075200	23075387	ENSG00000267886.1|AC074135.1|lncRNA|chr19:23075200:23075387:+	0	+
#Deleted in new
chr19	23075209	23075387	ENSG00000183850.13|ZNF730|pc|chr19:23075209:23075387:+	0	+
#Deleted in new
chr19	23075210	23075387	ENSG00000267886.1|AC074135.1|lncRNA|chr19:23075210:23075387:+	0	+
#Deleted in new
chr19	23095011	23095154	ENSG00000267886.1|AC074135.1|lncRNA|chr19:23095011:23095154:+	0	+
#Deleted in new
chr19	23095262	23095440	ENSG00000267886.1|AC074135.1|lncRNA|chr19:23095262:23095440:+	0	+
#Deleted in new
chr19	23095543	23095616	ENSG00000267886.1|AC074135.1|lncRNA|chr19:23095543:23095616:+	0	+
#Deleted in new
chr19	23098339	23098413	ENSG00000267886.1|AC074135.1|lncRNA|chr19:23098339:23098413:+	0	+
#Deleted in new
chr19	23100049	23100361	ENSG00000267886.1|AC074135.1|lncRNA|chr19:23100049:23100361:+	0	+
#Deleted in new
chr19	23116974	23117176	ENSG00000183850.13|ZNF730|pc|chr19:23116974:23117176:+	0	+
#Partially deleted in new
chr19	2324124	2324532	ENSG00000130332.14|LSM7|pc|chr19:2324124:2324532:-	0	-
#Deleted in new
chr19	23242588	23242710	ENSG00000196081.9|ZNF724|pc|chr19:23242588:23242710:-	0	-
#Deleted in new
chr19	2324741	2324906	ENSG00000130332.14|LSM7|pc|chr19:2324741:2324906:-	0	-
#Deleted in new
chr19	23257254	23257596	ENSG00000269107.1|AC092329.1|lncRNA|chr19:23257254:23257596:-	0	-
#Deleted in new
chr19	2325979	2326139	ENSG00000130332.14|LSM7|pc|chr19:2325979:2326139:-	0	-
#Deleted in new
chr19	23259905	23260116	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23259905:23260116:-	0	-
#Deleted in new
chr19	23259960	23260934	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23259960:23260934:-	0	-
#Deleted in new
chr19	23260000	23260116	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23260000:23260116:-	0	-
#Deleted in new
chr19	23260021	23260116	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23260021:23260116:-	0	-
#Deleted in new
chr19	23260658	23260934	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23260658:23260934:-	0	-
#Deleted in new
chr19	23260730	23260934	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23260730:23260934:-	0	-
#Deleted in new
chr19	23260863	23260934	ENSG00000283201.1|AC092329.3|pc|chr19:23260863:23260934:-	0	-
#Deleted in new
chr19	23260863	23260934	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23260863:23260934:-	0	-
#Deleted in new
chr19	23261223	23263874	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23261223:23263874:-	0	-
#Deleted in new
chr19	23261354	23261744	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23261354:23261744:-	0	-
#Deleted in new
chr19	23261619	23261744	ENSG00000283201.1|AC092329.3|pc|chr19:23261619:23261744:-	0	-
#Deleted in new
chr19	23261619	23261744	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23261619:23261744:-	0	-
#Deleted in new
chr19	23261619	23262634	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23261619:23262634:-	0	-
#Deleted in new
chr19	23269162	23269890	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23269162:23269890:-	0	-
#Deleted in new
chr19	23269762	23270292	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23269762:23270292:-	0	-
#Deleted in new
chr19	23269885	23270292	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23269885:23270292:-	0	-
#Deleted in new
chr19	23270217	23270292	ENSG00000269107.1|AC092329.1|lncRNA|chr19:23270217:23270292:-	0	-
#Deleted in new
chr19	23270217	23270292	ENSG00000283201.1|AC092329.3|pc|chr19:23270217:23270292:-	0	-
#Deleted in new
chr19	23270217	23270292	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23270217:23270292:-	0	-
#Deleted in new
chr19	23272618	23272719	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23272618:23272719:-	0	-
#Deleted in new
chr19	23272618	23272723	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23272618:23272723:-	0	-
#Deleted in new
chr19	23274075	23274196	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23274075:23274196:-	0	-
#Deleted in new
chr19	23274075	23274221	ENSG00000283201.1|AC092329.3|pc|chr19:23274075:23274221:-	0	-
#Deleted in new
chr19	23274075	23274228	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23274075:23274228:-	0	-
#Deleted in new
chr19	23274075	23274232	ENSG00000269107.1|AC092329.1|lncRNA|chr19:23274075:23274232:-	0	-
#Deleted in new
chr19	23274075	23274232	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23274075:23274232:-	0	-
#Deleted in new
chr19	23274075	23274244	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23274075:23274244:-	0	-
#Deleted in new
chr19	23274075	23274247	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23274075:23274247:-	0	-
#Deleted in new
chr19	23274075	23274248	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23274075:23274248:-	0	-
#Deleted in new
chr19	23274075	23274251	ENSG00000284428.1|AC092329.4|lncRNA|chr19:23274075:23274251:-	0	-
#Partially deleted in new
chr19	2327961	2328477	ENSG00000130332.14|LSM7|pc|chr19:2327961:2328477:-	0	-
#Deleted in new
chr19	2330296	2330350	ENSG00000005206.16|SPPL2B|pc|chr19:2330296:2330350:+	0	+
#Deleted in new
chr19	2330296	2330419	ENSG00000005206.16|SPPL2B|pc|chr19:2330296:2330419:+	0	+
#Deleted in new
chr19	2330423	2330759	ENSG00000005206.16|SPPL2B|pc|chr19:2330423:2330759:+	0	+
#Deleted in new
chr19	23304990	23305131	ENSG00000167232.13|ZNF91|pc|chr19:23304990:23305131:-	0	-
#Deleted in new
chr19	23304998	23305131	ENSG00000167232.13|ZNF91|pc|chr19:23304998:23305131:-	0	-
#Deleted in new
chr19	23306808	23309097	ENSG00000167232.13|ZNF91|pc|chr19:23306808:23309097:-	0	-
#Deleted in new
chr19	23307315	23307402	ENSG00000167232.13|ZNF91|pc|chr19:23307315:23307402:-	0	-
#Deleted in new
chr19	23308743	23309097	ENSG00000167232.13|ZNF91|pc|chr19:23308743:23309097:-	0	-
#Deleted in new
chr19	23308902	23309097	ENSG00000167232.13|ZNF91|pc|chr19:23308902:23309097:-	0	-
#Deleted in new
chr19	23308923	23309097	ENSG00000167232.13|ZNF91|pc|chr19:23308923:23309097:-	0	-
#Deleted in new
chr19	23310547	23310563	ENSG00000167232.13|ZNF91|pc|chr19:23310547:23310563:-	0	-
#Deleted in new
chr19	23310547	23310573	ENSG00000167232.13|ZNF91|pc|chr19:23310547:23310573:-	0	-
#Deleted in new
chr19	23310547	23310622	ENSG00000167232.13|ZNF91|pc|chr19:23310547:23310622:-	0	-
#Deleted in new
chr19	23337830	23340137	ENSG00000167232.13|ZNF91|pc|chr19:23337830:23340137:-	0	-
#Deleted in new
chr19	23338748	23339054	ENSG00000167232.13|ZNF91|pc|chr19:23338748:23339054:-	0	-
#Deleted in new
chr19	23338852	23339054	ENSG00000167232.13|ZNF91|pc|chr19:23338852:23339054:-	0	-
#Deleted in new
chr19	23338875	23339054	ENSG00000167232.13|ZNF91|pc|chr19:23338875:23339054:-	0	-
#Deleted in new
chr19	23339230	23339260	ENSG00000167232.13|ZNF91|pc|chr19:23339230:23339260:-	0	-
#Deleted in new
chr19	2337110	2337194	ENSG00000005206.16|SPPL2B|pc|chr19:2337110:2337194:+	0	+
#Deleted in new
chr19	2337114	2337333	ENSG00000005206.16|SPPL2B|pc|chr19:2337114:2337333:+	0	+
#Deleted in new
chr19	2338050	2338526	ENSG00000005206.16|SPPL2B|pc|chr19:2338050:2338526:+	0	+
#Deleted in new
chr19	23399232	23401047	ENSG00000269416.5|LINC01224|lncRNA|chr19:23399232:23401047:-	0	-
#Deleted in new
chr19	23399469	23401047	ENSG00000269416.5|LINC01224|lncRNA|chr19:23399469:23401047:-	0	-
#Deleted in new
chr19	23400983	23401047	ENSG00000269416.5|LINC01224|lncRNA|chr19:23400983:23401047:-	0	-
#Deleted in new
chr19	23400986	23401047	ENSG00000269416.5|LINC01224|lncRNA|chr19:23400986:23401047:-	0	-
#Deleted in new
chr19	23402176	23402512	ENSG00000269416.5|LINC01224|lncRNA|chr19:23402176:23402512:-	0	-
#Deleted in new
chr19	23402361	23402512	ENSG00000269416.5|LINC01224|lncRNA|chr19:23402361:23402512:-	0	-
#Deleted in new
chr19	23402416	23402512	ENSG00000269416.5|LINC01224|lncRNA|chr19:23402416:23402512:-	0	-
#Deleted in new
chr19	23403205	23403493	ENSG00000269416.5|LINC01224|lncRNA|chr19:23403205:23403493:-	0	-
#Deleted in new
chr19	23403205	23403509	ENSG00000269416.5|LINC01224|lncRNA|chr19:23403205:23403509:-	0	-
#Deleted in new
chr19	23403211	23403493	ENSG00000269416.5|LINC01224|lncRNA|chr19:23403211:23403493:-	0	-
#Deleted in new
chr19	23403279	23403509	ENSG00000269416.5|LINC01224|lncRNA|chr19:23403279:23403509:-	0	-
#Deleted in new
chr19	23403719	23403747	ENSG00000269416.5|LINC01224|lncRNA|chr19:23403719:23403747:-	0	-
#Deleted in new
chr19	23404751	23404846	ENSG00000269416.5|LINC01224|lncRNA|chr19:23404751:23404846:-	0	-
#Deleted in new
chr19	23404950	23405108	ENSG00000269416.5|LINC01224|lncRNA|chr19:23404950:23405108:-	0	-
#Deleted in new
chr19	23405257	23405335	ENSG00000269416.5|LINC01224|lncRNA|chr19:23405257:23405335:-	0	-
#Deleted in new
chr19	23405999	23406105	ENSG00000269416.5|LINC01224|lncRNA|chr19:23405999:23406105:-	0	-
#Deleted in new
chr19	23407897	23408091	ENSG00000269416.5|LINC01224|lncRNA|chr19:23407897:23408091:-	0	-
#Deleted in new
chr19	23415893	23416047	ENSG00000269416.5|LINC01224|lncRNA|chr19:23415893:23416047:-	0	-
#Deleted in new
chr19	23415893	23416059	ENSG00000269416.5|LINC01224|lncRNA|chr19:23415893:23416059:-	0	-
#Deleted in new
chr19	23415893	23416065	ENSG00000269416.5|LINC01224|lncRNA|chr19:23415893:23416065:-	0	-
#Deleted in new
chr19	23415893	23416071	ENSG00000269416.5|LINC01224|lncRNA|chr19:23415893:23416071:-	0	-
#Deleted in new
chr19	23415893	23416075	ENSG00000269416.5|LINC01224|lncRNA|chr19:23415893:23416075:-	0	-
#Deleted in new
chr19	23415903	23416065	ENSG00000269416.5|LINC01224|lncRNA|chr19:23415903:23416065:-	0	-
#Deleted in new
chr19	23415903	23416074	ENSG00000269416.5|LINC01224|lncRNA|chr19:23415903:23416074:-	0	-
#Deleted in new
chr19	234423	234641	ENSG00000282508.1|LINC01002|lncRNA|chr19:234423:234641:-	0	-
#Deleted in new
chr19	234425	234641	ENSG00000282508.1|LINC01002|lncRNA|chr19:234425:234641:-	0	-
#Deleted in new
chr19	23525630	23526587	ENSG00000197372.9|ZNF675|pc|chr19:23525630:23526587:-	0	-
#Deleted in new
chr19	23527917	23528014	ENSG00000197372.9|ZNF675|pc|chr19:23527917:23528014:-	0	-
#Partially deleted in new
chr19	2352945	2354806	ENSG00000005206.16|SPPL2B|pc|chr19:2352945:2354806:+	0	+
#Deleted in new
chr19	23534179	23534317	ENSG00000197372.9|ZNF675|pc|chr19:23534179:23534317:-	0	-
#Deleted in new
chr19	23574056	23574232	ENSG00000197372.9|ZNF675|pc|chr19:23574056:23574232:-	0	-
#Deleted in new
chr19	23656721	23656822	ENSG00000197372.9|ZNF675|pc|chr19:23656721:23656822:-	0	-
#Deleted in new
chr19	23658384	23658672	ENSG00000197372.9|ZNF675|pc|chr19:23658384:23658672:-	0	-
#Duplicated in new
chr19	23661934	23662209	ENSG00000197372.9|ZNF675|pc|chr19:23661934:23662209:-	0	-
#Deleted in new
chr19	23686178	23686381	ENSG00000197372.9|ZNF675|pc|chr19:23686178:23686381:-	0	-
#Deleted in new
chr19	23687030	23687140	ENSG00000197372.9|ZNF675|pc|chr19:23687030:23687140:-	0	-
#Partially deleted in new
chr19	23687030	23687188	ENSG00000197372.9|ZNF675|pc|chr19:23687030:23687188:-	0	-
#Partially deleted in new
chr19	23687030	23687197	ENSG00000197372.9|ZNF675|pc|chr19:23687030:23687197:-	0	-
#Partially deleted in new
chr19	23687030	23687202	ENSG00000197372.9|ZNF675|pc|chr19:23687030:23687202:-	0	-
#Partially deleted in new
chr19	23687030	23687212	ENSG00000197372.9|ZNF675|pc|chr19:23687030:23687212:-	0	-
#Partially deleted in new
chr19	23687030	23687220	ENSG00000197372.9|ZNF675|pc|chr19:23687030:23687220:-	0	-
#Duplicated in new
chr19	23744963	23745323	ENSG00000196172.9|ZNF681|pc|chr19:23744963:23745323:-	0	-
#Deleted in new
chr19	237935	237967	ENSG00000282508.1|LINC01002|lncRNA|chr19:237935:237967:-	0	-
#Deleted in new
chr19	237935	238067	ENSG00000282508.1|LINC01002|lncRNA|chr19:237935:238067:-	0	-
#Deleted in new
chr19	23817598	23819445	ENSG00000267924.1|AC139769.2|lncRNA|chr19:23817598:23819445:-	0	-
#Deleted in new
chr19	23823739	23823906	ENSG00000267924.1|AC139769.2|lncRNA|chr19:23823739:23823906:-	0	-
#Partially deleted in new
chr1	92387010	92402056	ENSG00000122484.8|RPAP2|pc|chr1:92387010:92402056:+	0	+
#Deleted in new
chr19	23874551	23874701	ENSG00000267924.1|AC139769.2|lncRNA|chr19:23874551:23874701:-	0	-
#Split in new
chr19	23919986	23921541	ENSG00000213967.10|ZNF726|pc|chr19:23919986:23921541:+	0	+
#Deleted in new
chr19	23923432	23923893	ENSG00000213967.10|ZNF726|pc|chr19:23923432:23923893:+	0	+
#Deleted in new
chr19	23927787	23929287	ENSG00000269397.1|AC011503.2|lncRNA|chr19:23927787:23929287:+	0	+
#Partially deleted in new
chr1	923927	924948	ENSG00000187634.11|SAMD11|pc|chr1:923927:924948:+	0	+
#Partially deleted in new
chr19	23943493	23944713	ENSG00000213967.10|ZNF726|pc|chr19:23943493:23944713:+	0	+
#Deleted in new
chr19	23944752	23945159	ENSG00000213967.10|ZNF726|pc|chr19:23944752:23945159:+	0	+
#Deleted in new
chr19	23949578	23950226	ENSG00000269289.5|AC011503.1|lncRNA|chr19:23949578:23950226:-	0	-
#Deleted in new
chr19	23952169	23952436	ENSG00000269289.5|AC011503.1|lncRNA|chr19:23952169:23952436:-	0	-
#Deleted in new
chr19	23957730	23957734	ENSG00000269289.5|AC011503.1|lncRNA|chr19:23957730:23957734:-	0	-
#Deleted in new
chr19	23957730	23957930	ENSG00000269289.5|AC011503.1|lncRNA|chr19:23957730:23957930:-	0	-
#Deleted in new
chr19	2396177	2396444	ENSG00000178297.12|TMPRSS9|pc|chr19:2396177:2396444:+	0	+
#Deleted in new
chr19	24033404	24033621	ENSG00000213096.10|ZNF254|pc|chr19:24033404:24033621:+	0	+
#Deleted in new
chr19	24033444	24033621	ENSG00000268362.5|AC092279.1|lncRNA|chr19:24033444:24033621:+	0	+
#Deleted in new
chr19	24033448	24033621	ENSG00000268362.5|AC092279.1|lncRNA|chr19:24033448:24033621:+	0	+
#Deleted in new
chr19	24048936	24049014	ENSG00000268362.5|AC092279.1|lncRNA|chr19:24048936:24049014:+	0	+
#Deleted in new
chr19	24049404	24049548	ENSG00000268362.5|AC092279.1|lncRNA|chr19:24049404:24049548:+	0	+
#Deleted in new
chr19	24063815	24063941	ENSG00000268362.5|AC092279.1|lncRNA|chr19:24063815:24063941:+	0	+
#Deleted in new
chr19	24064546	24064669	ENSG00000268362.5|AC092279.1|lncRNA|chr19:24064546:24064669:+	0	+
#Deleted in new
chr19	24065462	24066688	ENSG00000268362.5|AC092279.1|lncRNA|chr19:24065462:24066688:+	0	+
#Deleted in new
chr19	24065462	24066909	ENSG00000268362.5|AC092279.1|lncRNA|chr19:24065462:24066909:+	0	+
#Deleted in new
chr19	24078480	24080669	ENSG00000279425.1|AC092279.2|lncRNA|chr19:24078480:24080669:+	0	+
#Deleted in new
chr19	24087159	24087337	ENSG00000213096.10|ZNF254|pc|chr19:24087159:24087337:+	0	+
#Deleted in new
chr19	24087175	24087337	ENSG00000213096.10|ZNF254|pc|chr19:24087175:24087337:+	0	+
#Deleted in new
chr19	24087183	24087337	ENSG00000213096.10|ZNF254|pc|chr19:24087183:24087337:+	0	+
#Deleted in new
chr19	24087192	24087337	ENSG00000213096.10|ZNF254|pc|chr19:24087192:24087337:+	0	+
#Deleted in new
chr19	24087252	24087337	ENSG00000213096.10|ZNF254|pc|chr19:24087252:24087337:+	0	+
#Deleted in new
chr19	24091900	24092015	ENSG00000213096.10|ZNF254|pc|chr19:24091900:24092015:+	0	+
#Deleted in new
chr19	24103746	24103867	ENSG00000213096.10|ZNF254|pc|chr19:24103746:24103867:+	0	+
#Deleted in new
chr19	24107215	24107349	ENSG00000213096.10|ZNF254|pc|chr19:24107215:24107349:+	0	+
#Duplicated in new
chr19	24126253	24126545	ENSG00000213096.10|ZNF254|pc|chr19:24126253:24126545:+	0	+
#Deleted in new
chr19	24146700	24147081	ENSG00000276030.1|AC073534.2|lncRNA|chr19:24146700:24147081:+	0	+
#Partially deleted in new
chr19	2427637	2427993	ENSG00000176619.12|LMNB2|pc|chr19:2427637:2427993:-	0	-
#Partially deleted in new
chr19	2428165	2430952	ENSG00000176619.12|LMNB2|pc|chr19:2428165:2430952:-	0	-
#Partially deleted in new
chr19	2429470	2430308	ENSG00000176619.12|LMNB2|pc|chr19:2429470:2430308:-	0	-
#Deleted in new
chr19	2458934	2459100	ENSG00000267201.1|LINC01775|lncRNA|chr19:2458934:2459100:-	0	-
#Deleted in new
chr19	248550	251571	ENSG00000282393.1|AC016588.2|lncRNA|chr19:248550:251571:-	0	-
#Partially deleted in new
chr19	2511218	2515147	ENSG00000176533.12|GNG7|pc|chr19:2511218:2515147:-	0	-
#Deleted in new
chr1	925149	925189	ENSG00000187634.11|SAMD11|pc|chr1:925149:925189:+	0	+
#Deleted in new
chr19	2516941	2517082	ENSG00000176533.12|GNG7|pc|chr19:2516941:2517082:-	0	-
#Deleted in new
chr19	2555148	2555188	ENSG00000176533.12|GNG7|pc|chr19:2555148:2555188:-	0	-
#Deleted in new
chr1	925737	925800	ENSG00000187634.11|SAMD11|pc|chr1:925737:925800:+	0	+
#Deleted in new
chr1	925740	925800	ENSG00000187634.11|SAMD11|pc|chr1:925740:925800:+	0	+
#Deleted in new
chr1	925921	926013	ENSG00000187634.11|SAMD11|pc|chr1:925921:926013:+	0	+
#Partially deleted in new
chr19	2610154	2611862	ENSG00000267412.1|AC092068.2|lncRNA|chr19:2610154:2611862:-	0	-
#Deleted in new
chr19	2631953	2632133	ENSG00000267214.1|AC092068.1|lncRNA|chr19:2631953:2632133:+	0	+
#Deleted in new
chr19	2632575	2632849	ENSG00000267214.1|AC092068.1|lncRNA|chr19:2632575:2632849:+	0	+
#Deleted in new
chr19	2641837	2643853	ENSG00000267749.1|AC092068.3|lncRNA|chr19:2641837:2643853:-	0	-
#Deleted in new
chr19	2646223	2646280	ENSG00000176533.12|GNG7|pc|chr19:2646223:2646280:-	0	-
#Partially deleted in new
chr1	9265529	9268037	ENSG00000049239.12|H6PD|pc|chr1:9265529:9268037:+	0	+
#Deleted in new
chr19	2683479	2683691	ENSG00000176533.12|GNG7|pc|chr19:2683479:2683691:-	0	-
#Deleted in new
chr19	2700688	2701266	ENSG00000276097.1|AC006538.3|lncRNA|chr19:2700688:2701266:-	0	-
#Deleted in new
chr19	2702645	2702709	ENSG00000176533.12|GNG7|pc|chr19:2702645:2702709:-	0	-
#Deleted in new
chr1	9271144	9271337	ENSG00000049239.12|H6PD|pc|chr1:9271144:9271337:+	0	+
#Deleted in new
chr19	2719151	2719182	ENSG00000176490.4|DIRAS1|pc|chr19:2719151:2719182:-	0	-
#Partially deleted in new
chr19	2727742	2729327	ENSG00000261342.1|AC006538.1|lncRNA|chr19:2727742:2729327:-	0	-
#Deleted in new
chr19	2732203	2732286	ENSG00000141873.10|SLC39A3|pc|chr19:2732203:2732286:-	0	-
#Partially deleted in new
chr19	2734523	2737379	ENSG00000141873.10|SLC39A3|pc|chr19:2734523:2737379:-	0	-
#Partially deleted in new
chr19	2737277	2737776	ENSG00000141873.10|SLC39A3|pc|chr19:2737277:2737776:-	0	-
#Deleted in new
chr19	2739429	2739475	ENSG00000141873.10|SLC39A3|pc|chr19:2739429:2739475:-	0	-
#Partially deleted in new
chr19	2754713	2755933	ENSG00000104969.9|SGTA|pc|chr19:2754713:2755933:-	0	-
#Partially deleted in new
chr19	2759256	2759542	ENSG00000104969.9|SGTA|pc|chr19:2759256:2759542:-	0	-
#Deleted in new
chr19	27638482	27638678	ENSG00000267696.6|ERVK-28|lncRNA|chr19:27638482:27638678:-	0	-
#Deleted in new
chr19	27638508	27638678	ENSG00000267696.6|ERVK-28|lncRNA|chr19:27638508:27638678:-	0	-
#Deleted in new
chr19	27639299	27639665	ENSG00000279882.1|AC112702.1|lncRNA|chr19:27639299:27639665:-	0	-
#Deleted in new
chr19	27640377	27640638	ENSG00000267696.6|ERVK-28|lncRNA|chr19:27640377:27640638:-	0	-
#Deleted in new
chr19	27640434	27640638	ENSG00000267696.6|ERVK-28|lncRNA|chr19:27640434:27640638:-	0	-
#Deleted in new
chr19	27646345	27646483	ENSG00000267696.6|ERVK-28|lncRNA|chr19:27646345:27646483:-	0	-
#Deleted in new
chr19	27684579	27684607	ENSG00000261824.6|LINC00662|lncRNA|chr19:27684579:27684607:-	0	-
#Deleted in new
chr19	27701490	27701645	ENSG00000261824.6|LINC00662|lncRNA|chr19:27701490:27701645:-	0	-
#Deleted in new
chr19	2770168	2770781	ENSG00000104969.9|SGTA|pc|chr19:2770168:2770781:-	0	-
#Deleted in new
chr19	27715785	27715858	ENSG00000261824.6|LINC00662|lncRNA|chr19:27715785:27715858:-	0	-
#Deleted in new
chr19	27723028	27723180	ENSG00000261824.6|LINC00662|lncRNA|chr19:27723028:27723180:-	0	-
#Deleted in new
chr19	27730272	27732447	ENSG00000261824.6|LINC00662|lncRNA|chr19:27730272:27732447:-	0	-
#Deleted in new
chr19	27732795	27732967	ENSG00000261824.6|LINC00662|lncRNA|chr19:27732795:27732967:-	0	-
#Deleted in new
chr1	92773905	92774027	ENSG00000067208.14|EVI5|pc|chr1:92773905:92774027:-	0	-
#Deleted in new
chr19	27746097	27746230	ENSG00000261824.6|LINC00662|lncRNA|chr19:27746097:27746230:-	0	-
#Deleted in new
chr19	27746097	27746340	ENSG00000261824.6|LINC00662|lncRNA|chr19:27746097:27746340:-	0	-
#Partially deleted in new
chr19	27757183	27760849	ENSG00000261770.1|AC006504.1|lncRNA|chr19:27757183:27760849:-	0	-
#Deleted in new
chr19	27771663	27771832	ENSG00000261824.6|LINC00662|lncRNA|chr19:27771663:27771832:-	0	-
#Partially deleted in new
chr19	27773962	27774252	ENSG00000261824.6|LINC00662|lncRNA|chr19:27773962:27774252:-	0	-
#Deleted in new
chr19	2777492	2778013	ENSG00000104969.9|SGTA|pc|chr19:2777492:2778013:-	0	-
#Deleted in new
chr19	27775756	27777638	ENSG00000261824.6|LINC00662|lncRNA|chr19:27775756:27777638:-	0	-
#Deleted in new
chr19	27778639	27779043	ENSG00000261824.6|LINC00662|lncRNA|chr19:27778639:27779043:-	0	-
#Deleted in new
chr19	27790490	27791901	ENSG00000261824.6|LINC00662|lncRNA|chr19:27790490:27791901:-	0	-
#Deleted in new
chr19	27791702	27791901	ENSG00000261824.6|LINC00662|lncRNA|chr19:27791702:27791901:-	0	-
#Deleted in new
chr19	27792999	27793031	ENSG00000261824.6|LINC00662|lncRNA|chr19:27792999:27793031:-	0	-
#Deleted in new
chr19	27792999	27793232	ENSG00000261824.6|LINC00662|lncRNA|chr19:27792999:27793232:-	0	-
#Deleted in new
chr19	27792999	27793371	ENSG00000261824.6|LINC00662|lncRNA|chr19:27792999:27793371:-	0	-
#Deleted in new
chr19	27792999	27793378	ENSG00000261824.6|LINC00662|lncRNA|chr19:27792999:27793378:-	0	-
#Deleted in new
chr19	27792999	27793394	ENSG00000261824.6|LINC00662|lncRNA|chr19:27792999:27793394:-	0	-
#Deleted in new
chr19	27793462	27793650	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27793462:27793650:+	0	+
#Deleted in new
chr19	27793482	27793609	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27793482:27793609:+	0	+
#Deleted in new
chr19	27793487	27793650	ENSG00000272635.1|AC006504.7|lncRNA|chr19:27793487:27793650:+	0	+
#Deleted in new
chr19	27793493	27793650	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27793493:27793650:+	0	+
#Deleted in new
chr19	27793494	27793650	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27793494:27793650:+	0	+
#Deleted in new
chr19	27793502	27793650	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27793502:27793650:+	0	+
#Deleted in new
chr19	27793522	27793650	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27793522:27793650:+	0	+
#Deleted in new
chr19	27793531	27793940	ENSG00000261824.6|LINC00662|lncRNA|chr19:27793531:27793940:-	0	-
#Deleted in new
chr19	27793894	27794122	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27793894:27794122:+	0	+
#Deleted in new
chr19	27794023	27794122	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27794023:27794122:+	0	+
#Deleted in new
chr19	27794023	27796424	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27794023:27796424:+	0	+
#Deleted in new
chr19	27794038	27794122	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27794038:27794122:+	0	+
#Deleted in new
chr19	27794038	27794142	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27794038:27794142:+	0	+
#Deleted in new
chr19	27794048	27794122	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27794048:27794122:+	0	+
#Deleted in new
chr19	27794681	27794965	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27794681:27794965:+	0	+
#Deleted in new
chr19	27794681	27795153	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27794681:27795153:+	0	+
#Deleted in new
chr19	27794697	27795152	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27794697:27795152:+	0	+
#Deleted in new
chr19	27797753	27798012	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27797753:27798012:+	0	+
#Deleted in new
chr19	27797753	27798176	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27797753:27798176:+	0	+
#Deleted in new
chr19	27797753	27798282	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27797753:27798282:+	0	+
#Deleted in new
chr19	27799217	27799403	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27799217:27799403:+	0	+
#Deleted in new
chr19	27799217	27799466	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27799217:27799466:+	0	+
#Deleted in new
chr19	2782569	2782658	ENSG00000104969.9|SGTA|pc|chr19:2782569:2782658:-	0	-
#Deleted in new
chr19	27849729	27850069	ENSG00000266977.1|AC006504.2|lncRNA|chr19:27849729:27850069:-	0	-
#Deleted in new
chr19	2786948	2787034	ENSG00000172009.14|THOP1|pc|chr19:2786948:2787034:+	0	+
#Deleted in new
chr19	27900788	27900869	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27900788:27900869:+	0	+
#Deleted in new
chr19	27900999	27901204	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27900999:27901204:+	0	+
#Deleted in new
chr19	27918682	27918797	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27918682:27918797:+	0	+
#Deleted in new
chr19	27918682	27918863	ENSG00000267575.6|AC006504.5|lncRNA|chr19:27918682:27918863:+	0	+
#Deleted in new
chr19	2804610	2804656	ENSG00000172009.14|THOP1|pc|chr19:2804610:2804656:+	0	+
#Partially deleted in new
chr19	2806016	2807052	ENSG00000172009.14|THOP1|pc|chr19:2806016:2807052:+	0	+
#Deleted in new
chr19	28065266	28065365	ENSG00000267509.5|AC010511.1|lncRNA|chr19:28065266:28065365:+	0	+
#Partially deleted in new
chr19	2809537	2810490	ENSG00000172009.14|THOP1|pc|chr19:2809537:2810490:+	0	+
#Deleted in new
chr19	2809845	2810098	ENSG00000172009.14|THOP1|pc|chr19:2809845:2810098:+	0	+
#Deleted in new
chr19	2812026	2812188	ENSG00000172009.14|THOP1|pc|chr19:2812026:2812188:+	0	+
#Deleted in new
chr19	2812198	2812372	ENSG00000172009.14|THOP1|pc|chr19:2812198:2812372:+	0	+
#Deleted in new
chr19	28122233	28122290	ENSG00000267509.5|AC010511.1|lncRNA|chr19:28122233:28122290:+	0	+
#Deleted in new
chr19	28122236	28122290	ENSG00000267509.5|AC010511.1|lncRNA|chr19:28122236:28122290:+	0	+
#Deleted in new
chr19	28125254	28125394	ENSG00000267509.5|AC010511.1|lncRNA|chr19:28125254:28125394:+	0	+
#Deleted in new
chr19	28125254	28125430	ENSG00000267509.5|AC010511.1|lncRNA|chr19:28125254:28125430:+	0	+
#Partially deleted in new
chr19	2813114	2815807	ENSG00000172009.14|THOP1|pc|chr19:2813114:2815807:+	0	+
#Deleted in new
chr19	2813495	2813599	ENSG00000172009.14|THOP1|pc|chr19:2813495:2813599:+	0	+
#Deleted in new
chr19	2819873	2820124	ENSG00000172006.11|ZNF554|pc|chr19:2819873:2820124:+	0	+
#Deleted in new
chr19	2819918	2820124	ENSG00000172006.11|ZNF554|pc|chr19:2819918:2820124:+	0	+
#Deleted in new
chr19	2819949	2820124	ENSG00000172006.11|ZNF554|pc|chr19:2819949:2820124:+	0	+
#Deleted in new
chr19	2826249	2826346	ENSG00000172006.11|ZNF554|pc|chr19:2826249:2826346:+	0	+
#Partially deleted in new
chr19	282751	288537	ENSG00000141934.9|PLPP2|pc|chr19:282751:288537:-	0	-
#Deleted in new
chr19	28294092	28294534	ENSG00000266928.1|AC020905.1|lncRNA|chr19:28294092:28294534:-	0	-
#Deleted in new
chr19	2830557	2832494	ENSG00000172006.11|ZNF554|pc|chr19:2830557:2832494:+	0	+
#Deleted in new
chr19	28320199	28320258	ENSG00000267320.5|AC005580.1|lncRNA|chr19:28320199:28320258:-	0	-
#Deleted in new
chr19	2832302	2832494	ENSG00000172006.11|ZNF554|pc|chr19:2832302:2832494:+	0	+
#Deleted in new
chr19	2833162	2833269	ENSG00000172006.11|ZNF554|pc|chr19:2833162:2833269:+	0	+
#Split in new
chr19	2833680	2834154	ENSG00000172006.11|ZNF554|pc|chr19:2833680:2834154:+	0	+
#Deleted in new
chr1	92833795	92833949	ENSG00000122406.12|RPL5|pc|chr1:92833795:92833949:+	0	+
#Deleted in new
chr19	28371774	28372034	ENSG00000267320.5|AC005580.1|lncRNA|chr19:28371774:28372034:-	0	-
#Deleted in new
chr19	28378419	28378518	ENSG00000267320.5|AC005580.1|lncRNA|chr19:28378419:28378518:-	0	-
#Deleted in new
chr19	28386111	28386171	ENSG00000267320.5|AC005580.1|lncRNA|chr19:28386111:28386171:-	0	-
#Deleted in new
chr19	28386111	28386178	ENSG00000267320.5|AC005580.1|lncRNA|chr19:28386111:28386178:-	0	-
#Deleted in new
chr19	28386111	28386204	ENSG00000267320.5|AC005580.1|lncRNA|chr19:28386111:28386204:-	0	-
#Deleted in new
chr19	28396327	28396428	ENSG00000267238.1|AC093074.1|lncRNA|chr19:28396327:28396428:-	0	-
#Deleted in new
chr19	2841434	2841575	ENSG00000186300.11|ZNF555|pc|chr19:2841434:2841575:+	0	+
#Deleted in new
chr19	2841436	2841483	ENSG00000186300.11|ZNF555|pc|chr19:2841436:2841483:+	0	+
#Deleted in new
chr19	2841443	2841575	ENSG00000186300.11|ZNF555|pc|chr19:2841443:2841575:+	0	+
#Deleted in new
chr19	28429349	28429490	ENSG00000260725.1|AC005307.1|lncRNA|chr19:28429349:28429490:-	0	-
#Partially deleted in new
chr19	28436915	28437134	ENSG00000283403.1|AC005394.2|lncRNA|chr19:28436915:28437134:-	0	-
#Deleted in new
chr19	28437059	28437134	ENSG00000267243.6|AC005381.1|lncRNA|chr19:28437059:28437134:-	0	-
#Deleted in new
chr19	28437484	28437718	ENSG00000283403.1|AC005394.2|lncRNA|chr19:28437484:28437718:-	0	-
#Deleted in new
chr19	28437581	28437718	ENSG00000267243.6|AC005381.1|lncRNA|chr19:28437581:28437718:-	0	-
#Deleted in new
chr19	28437640	28437718	ENSG00000267243.6|AC005381.1|lncRNA|chr19:28437640:28437718:-	0	-
#Deleted in new
chr19	28453843	28453935	ENSG00000267243.6|AC005381.1|lncRNA|chr19:28453843:28453935:-	0	-
#Deleted in new
chr19	28457010	28457076	ENSG00000267243.6|AC005381.1|lncRNA|chr19:28457010:28457076:-	0	-
#Deleted in new
chr19	28466401	28466682	ENSG00000267243.6|AC005381.1|lncRNA|chr19:28466401:28466682:-	0	-
#Deleted in new
chr19	28466401	28466693	ENSG00000267243.6|AC005381.1|lncRNA|chr19:28466401:28466693:-	0	-
#Deleted in new
chr19	28466401	28466780	ENSG00000267243.6|AC005381.1|lncRNA|chr19:28466401:28466780:-	0	-
#Deleted in new
chr19	28466401	28466780	ENSG00000283403.1|AC005394.2|lncRNA|chr19:28466401:28466780:-	0	-
#Deleted in new
chr19	2847226	2847384	ENSG00000267063.1|AC006130.1|lncRNA|chr19:2847226:2847384:-	0	-
#Partially deleted in new
chr19	28509237	28509388	ENSG00000267423.1|AC005616.1|lncRNA|chr19:28509237:28509388:+	0	+
#Duplicated in new
chr19	2851467	2851651	ENSG00000186300.11|ZNF555|pc|chr19:2851467:2851651:+	0	+
#Deleted in new
chr19	28518300	28518728	ENSG00000267423.1|AC005616.1|lncRNA|chr19:28518300:28518728:+	0	+
#Split in new
chr19	2852379	2860484	ENSG00000186300.11|ZNF555|pc|chr19:2852379:2860484:+	0	+
#Deleted in new
chr19	28535099	28535277	ENSG00000267243.6|AC005381.1|lncRNA|chr19:28535099:28535277:-	0	-
#Deleted in new
chr19	2858319	2858716	ENSG00000267063.1|AC006130.1|lncRNA|chr19:2858319:2858716:-	0	-
#Deleted in new
chr19	28602378	28602543	ENSG00000267537.1|AC079466.2|lncRNA|chr19:28602378:28602543:-	0	-
#Deleted in new
chr19	28606687	28607104	ENSG00000266976.1|AC079466.1|lncRNA|chr19:28606687:28607104:+	0	+
#Deleted in new
chr19	28610259	28610331	ENSG00000266976.1|AC079466.1|lncRNA|chr19:28610259:28610331:+	0	+
#Deleted in new
chr19	28610981	28612154	ENSG00000266976.1|AC079466.1|lncRNA|chr19:28610981:28612154:+	0	+
#Deleted in new
chr19	28612438	28615229	ENSG00000266976.1|AC079466.1|lncRNA|chr19:28612438:28615229:+	0	+
#Deleted in new
chr19	28632619	28632728	ENSG00000266893.1|AC005394.1|lncRNA|chr19:28632619:28632728:-	0	-
#Deleted in new
chr19	2867334	2867424	ENSG00000172000.7|ZNF556|pc|chr19:2867334:2867424:+	0	+
#Deleted in new
chr19	28726293	28726337	ENSG00000283403.1|AC005394.2|lncRNA|chr19:28726293:28726337:-	0	-
#Deleted in new
chr19	28727579	28727680	ENSG00000283403.1|AC005394.2|lncRNA|chr19:28727579:28727680:-	0	-
#Partially deleted in new
chr19	2877272	2883445	ENSG00000172000.7|ZNF556|pc|chr19:2877272:2883445:+	0	+
#Deleted in new
chr19	28869795	28869921	ENSG00000267617.1|AC007795.1|lncRNA|chr19:28869795:28869921:+	0	+
#Deleted in new
chr19	28878935	28879170	ENSG00000267617.1|AC007795.1|lncRNA|chr19:28878935:28879170:+	0	+
#Deleted in new
chr19	28892930	28892959	ENSG00000267683.1|AC008991.2|lncRNA|chr19:28892930:28892959:+	0	+
#Deleted in new
chr19	28936876	28937005	ENSG00000267528.1|AC008991.1|lncRNA|chr19:28936876:28937005:+	0	+
#Deleted in new
chr19	28949436	28949621	ENSG00000267027.1|AC011524.1|lncRNA|chr19:28949436:28949621:-	0	-
#Deleted in new
chr19	28953199	28953245	ENSG00000267528.1|AC008991.1|lncRNA|chr19:28953199:28953245:+	0	+
#Deleted in new
chr19	28960505	28960809	ENSG00000267240.1|AC011524.2|lncRNA|chr19:28960505:28960809:-	0	-
#Deleted in new
chr19	28964439	28964501	ENSG00000267240.1|AC011524.2|lncRNA|chr19:28964439:28964501:-	0	-
#Deleted in new
chr19	28964910	28964943	ENSG00000267240.1|AC011524.2|lncRNA|chr19:28964910:28964943:-	0	-
#Deleted in new
chr19	28965130	28965355	ENSG00000267339.5|LINC00906|lncRNA|chr19:28965130:28965355:+	0	+
#Partially deleted in new
chr19	28969705	28969839	ENSG00000267339.5|LINC00906|lncRNA|chr19:28969705:28969839:+	0	+
#Deleted in new
chr19	28969742	28969839	ENSG00000267339.5|LINC00906|lncRNA|chr19:28969742:28969839:+	0	+
#Deleted in new
chr19	28970199	28970267	ENSG00000267339.5|LINC00906|lncRNA|chr19:28970199:28970267:+	0	+
#Deleted in new
chr19	28970200	28970267	ENSG00000267339.5|LINC00906|lncRNA|chr19:28970200:28970267:+	0	+
#Deleted in new
chr19	28970200	28970299	ENSG00000267339.5|LINC00906|lncRNA|chr19:28970200:28970299:+	0	+
#Deleted in new
chr19	28970403	28970670	ENSG00000267339.5|LINC00906|lncRNA|chr19:28970403:28970670:+	0	+
#Deleted in new
chr19	28970403	28970672	ENSG00000267339.5|LINC00906|lncRNA|chr19:28970403:28970672:+	0	+
#Deleted in new
chr19	28970522	28970672	ENSG00000267339.5|LINC00906|lncRNA|chr19:28970522:28970672:+	0	+
#Deleted in new
chr19	29002591	29002623	ENSG00000267014.5|LINC01532|lncRNA|chr19:29002591:29002623:+	0	+
#Partially deleted in new
chr19	29003601	29003740	ENSG00000267014.5|LINC01532|lncRNA|chr19:29003601:29003740:+	0	+
#Deleted in new
chr19	2900897	2901048	ENSG00000171970.12|ZNF57|pc|chr19:2900897:2901048:+	0	+
#Deleted in new
chr19	29010730	29010946	ENSG00000267014.5|LINC01532|lncRNA|chr19:29010730:29010946:+	0	+
#Deleted in new
chr19	29010730	29011017	ENSG00000267014.5|LINC01532|lncRNA|chr19:29010730:29011017:+	0	+
#Deleted in new
chr19	29012510	29012614	ENSG00000267014.5|LINC01532|lncRNA|chr19:29012510:29012614:+	0	+
#Partially deleted in new
chr19	29012510	29013955	ENSG00000267014.5|LINC01532|lncRNA|chr19:29012510:29013955:+	0	+
#Deleted in new
chr19	2907107	2907159	ENSG00000171970.12|ZNF57|pc|chr19:2907107:2907159:+	0	+
#Deleted in new
chr19	2912135	2912261	ENSG00000171970.12|ZNF57|pc|chr19:2912135:2912261:+	0	+
#Partially deleted in new
chr19	2915145	2915708	ENSG00000253392.2|AC119403.1|lncRNA|chr19:2915145:2915708:-	0	-
#Deleted in new
chr19	2915717	2915738	ENSG00000171970.12|ZNF57|pc|chr19:2915717:2915738:+	0	+
#Deleted in new
chr19	2916485	2916510	ENSG00000171970.12|ZNF57|pc|chr19:2916485:2916510:+	0	+
#Deleted in new
chr19	2916596	2916619	ENSG00000171970.12|ZNF57|pc|chr19:2916596:2916619:+	0	+
#Duplicated in new
chr19	29212904	29213541	ENSG00000169021.5|UQCRFS1|pc|chr19:29212904:29213541:-	0	-
#Deleted in new
chr19	29215280	29215489	ENSG00000267498.1|AC007786.1|lncRNA|chr19:29215280:29215489:+	0	+
#Partially deleted in new
chr19	29220863	29221666	ENSG00000276251.1|AC007786.2|lncRNA|chr19:29220863:29221666:+	0	+
#Deleted in new
chr19	2926696	2926807	ENSG00000253392.2|AC119403.1|lncRNA|chr19:2926696:2926807:-	0	-
#Deleted in new
chr19	2936523	2936704	ENSG00000175691.8|ZNF77|pc|chr19:2936523:2936704:-	0	-
#Deleted in new
chr19	29391420	29391608	ENSG00000264515.5|AC011474.1|lncRNA|chr19:29391420:29391608:-	0	-
#Deleted in new
chr19	29392881	29393075	ENSG00000264515.5|AC011474.1|lncRNA|chr19:29392881:29393075:-	0	-
#Deleted in new
chr19	29395333	29395583	ENSG00000264515.5|AC011474.1|lncRNA|chr19:29395333:29395583:-	0	-
#Deleted in new
chr19	29412230	29412966	ENSG00000264515.5|AC011474.1|lncRNA|chr19:29412230:29412966:-	0	-
#Deleted in new
chr19	29412774	29412966	ENSG00000264515.5|AC011474.1|lncRNA|chr19:29412774:29412966:-	0	-
#Deleted in new
chr19	29448037	29448098	ENSG00000267574.1|AC011474.3|lncRNA|chr19:29448037:29448098:+	0	+
#Deleted in new
chr19	2944837	2944933	ENSG00000175691.8|ZNF77|pc|chr19:2944837:2944933:-	0	-
#Deleted in new
chr19	2944837	2944971	ENSG00000175691.8|ZNF77|pc|chr19:2944837:2944971:-	0	-
#Deleted in new
chr19	2949034	2950644	ENSG00000279452.1|AC006277.1|lncRNA|chr19:2949034:2950644:+	0	+
#Split in new
chr19	29604016	29606325	ENSG00000105171.9|POP4|pc|chr19:29604016:29606325:+	0	+
#Partially deleted in new
chr19	29615243	29617237	ENSG00000105171.9|POP4|pc|chr19:29615243:29617237:+	0	+
#Deleted in new
chr19	29665055	29665505	ENSG00000166289.5|PLEKHF1|pc|chr19:29665055:29665505:+	0	+
#Deleted in new
chr19	29665458	29665795	ENSG00000166289.5|PLEKHF1|pc|chr19:29665458:29665795:+	0	+
#Deleted in new
chr19	29665500	29665781	ENSG00000166289.5|PLEKHF1|pc|chr19:29665500:29665781:+	0	+
#Deleted in new
chr19	29714906	29715056	ENSG00000131943.17|C19orf12|pc|chr19:29714906:29715056:-	0	-
#Deleted in new
chr19	2977445	2977610	ENSG00000104953.19|TLE6|pc|chr19:2977445:2977610:+	0	+
#Deleted in new
chr19	2977537	2977619	ENSG00000104953.19|TLE6|pc|chr19:2977537:2977619:+	0	+
#Deleted in new
chr19	2977549	2977610	ENSG00000104953.19|TLE6|pc|chr19:2977549:2977610:+	0	+
#Deleted in new
chr19	2977563	2977610	ENSG00000104953.19|TLE6|pc|chr19:2977563:2977610:+	0	+
#Deleted in new
chr19	2977579	2977619	ENSG00000104953.19|TLE6|pc|chr19:2977579:2977619:+	0	+
#Deleted in new
chr19	2978197	2978284	ENSG00000104953.19|TLE6|pc|chr19:2978197:2978284:+	0	+
#Deleted in new
chr19	2980099	2980182	ENSG00000104953.19|TLE6|pc|chr19:2980099:2980182:+	0	+
#Deleted in new
chr19	2980099	2980407	ENSG00000104953.19|TLE6|pc|chr19:2980099:2980407:+	0	+
#Deleted in new
chr19	2981537	2981583	ENSG00000104953.19|TLE6|pc|chr19:2981537:2981583:+	0	+
#Deleted in new
chr19	2982147	2982189	ENSG00000104953.19|TLE6|pc|chr19:2982147:2982189:+	0	+
#Deleted in new
chr19	2987410	2987438	ENSG00000104953.19|TLE6|pc|chr19:2987410:2987438:+	0	+
#Deleted in new
chr19	2987723	2987790	ENSG00000104953.19|TLE6|pc|chr19:2987723:2987790:+	0	+
#Partially deleted in new
chr19	2987723	2988128	ENSG00000104953.19|TLE6|pc|chr19:2987723:2988128:+	0	+
#Deleted in new
chr19	2987897	2987974	ENSG00000104953.19|TLE6|pc|chr19:2987897:2987974:+	0	+
#Deleted in new
chr19	29915861	29917830	ENSG00000278895.1|AC008507.5|lncRNA|chr19:29915861:29917830:+	0	+
#Deleted in new
chr19	29925533	29925897	ENSG00000105176.17|URI1|pc|chr19:29925533:29925897:+	0	+
#Deleted in new
chr19	29937642	29937997	ENSG00000105176.17|URI1|pc|chr19:29937642:29937997:+	0	+
#Deleted in new
chr19	29957976	29958072	ENSG00000105176.17|URI1|pc|chr19:29957976:29958072:+	0	+
#Deleted in new
chr19	2997646	2997762	ENSG00000065717.14|TLE2|pc|chr19:2997646:2997762:-	0	-
#Deleted in new
chr19	30028740	30029916	ENSG00000267006.1|AC008507.2|lncRNA|chr19:30028740:30029916:-	0	-
#Partially deleted in new
chr19	301443	306711	ENSG00000105556.11|MIER2|pc|chr19:301443:306711:-	0	-
#Deleted in new
chr1	930154	930336	ENSG00000187634.11|SAMD11|pc|chr1:930154:930336:+	0	+
#Deleted in new
chr19	3017839	3017859	ENSG00000065717.14|TLE2|pc|chr19:3017839:3017859:-	0	-
#Deleted in new
chr19	3019971	3020227	ENSG00000065717.14|TLE2|pc|chr19:3019971:3020227:-	0	-
#Deleted in new
chr19	3020513	3020589	ENSG00000065717.14|TLE2|pc|chr19:3020513:3020589:-	0	-
#Deleted in new
chr19	3025403	3025616	ENSG00000065717.14|TLE2|pc|chr19:3025403:3025616:-	0	-
#Deleted in new
chr19	3025554	3025647	ENSG00000065717.14|TLE2|pc|chr19:3025554:3025647:-	0	-
#Deleted in new
chr19	3029549	3029613	ENSG00000065717.14|TLE2|pc|chr19:3029549:3029613:-	0	-
#Deleted in new
chr19	3029549	3029614	ENSG00000065717.14|TLE2|pc|chr19:3029549:3029614:-	0	-
#Deleted in new
chr19	3029549	3029622	ENSG00000065717.14|TLE2|pc|chr19:3029549:3029622:-	0	-
#Deleted in new
chr1	930311	930336	ENSG00000187634.11|SAMD11|pc|chr1:930311:930336:+	0	+
#Deleted in new
chr19	3045725	3045730	ENSG00000065717.14|TLE2|pc|chr19:3045725:3045730:-	0	-
#Deleted in new
chr19	3045725	3045788	ENSG00000065717.14|TLE2|pc|chr19:3045725:3045788:-	0	-
#Deleted in new
chr19	3045725	3045799	ENSG00000065717.14|TLE2|pc|chr19:3045725:3045799:-	0	-
#Deleted in new
chr19	3047562	3047635	ENSG00000065717.14|TLE2|pc|chr19:3047562:3047635:-	0	-
#Partially deleted in new
chr19	3055663	3056196	ENSG00000104964.14|AES|pc|chr19:3055663:3056196:-	0	-
#Split in new
chr19	3056311	3056679	ENSG00000104964.14|AES|pc|chr19:3056311:3056679:-	0	-
#Split in new
chr19	3056311	3056768	ENSG00000104964.14|AES|pc|chr19:3056311:3056768:-	0	-
#Deleted in new
chr19	3062699	3062883	ENSG00000104964.14|AES|pc|chr19:3062699:3062883:-	0	-
#Deleted in new
chr19	3062699	3063107	ENSG00000104964.14|AES|pc|chr19:3062699:3063107:-	0	-
#Deleted in new
chr19	30665273	30665760	ENSG00000267760.1|AC011478.1|lncRNA|chr19:30665273:30665760:-	0	-
#Deleted in new
chr19	30668580	30668647	ENSG00000267760.1|AC011478.1|lncRNA|chr19:30668580:30668647:-	0	-
#Deleted in new
chr1	93080964	93081019	ENSG00000143033.17|MTF2|pc|chr1:93080964:93081019:+	0	+
#Deleted in new
chr19	30872046	30872507	ENSG00000267081.1|AC011507.1|lncRNA|chr19:30872046:30872507:+	0	+
#Deleted in new
chr19	30946581	30946673	ENSG00000267378.1|AC020897.1|lncRNA|chr19:30946581:30946673:+	0	+
#Partially deleted in new
chr19	30956723	30957192	ENSG00000267378.1|AC020897.1|lncRNA|chr19:30956723:30957192:+	0	+
#Deleted in new
chr19	31119236	31119348	ENSG00000284430.1|AC020912.1|lncRNA|chr19:31119236:31119348:+	0	+
#Deleted in new
chr19	3115259	3115428	ENSG00000088256.8|GNA11|pc|chr19:3115259:3115428:+	0	+
#Partially deleted in new
chr19	3117149	3119359	ENSG00000088256.8|GNA11|pc|chr19:3117149:3119359:+	0	+
#Deleted in new
chr19	3118695	3118819	ENSG00000088256.8|GNA11|pc|chr19:3118695:3118819:+	0	+
#Deleted in new
chr19	31195589	31195703	ENSG00000267777.1|LINC01791|lncRNA|chr19:31195589:31195703:+	0	+
#Partially deleted in new
chr1	93120792	93120894	ENSG00000143033.17|MTF2|pc|chr1:93120792:93120894:+	0	+
#Deleted in new
chr1	93120798	93120894	ENSG00000143033.17|MTF2|pc|chr1:93120798:93120894:+	0	+
#Deleted in new
chr19	31417601	31417794	ENSG00000267662.1|AC025809.1|lncRNA|chr19:31417601:31417794:+	0	+
#Deleted in new
chr19	31427215	31427302	ENSG00000267636.1|AC008992.1|lncRNA|chr19:31427215:31427302:+	0	+
#Deleted in new
chr19	3143062	3143193	ENSG00000267551.3|AC005264.1|lncRNA|chr19:3143062:3143193:-	0	-
#Deleted in new
chr19	3146402	3146591	ENSG00000060558.3|GNA15|pc|chr19:3146402:3146591:+	0	+
#Partially deleted in new
chr19	3148615	3149790	ENSG00000267551.3|AC005264.1|lncRNA|chr19:3148615:3149790:-	0	-
#Deleted in new
chr19	31542038	31542320	ENSG00000267407.1|AC008794.1|lncRNA|chr19:31542038:31542320:+	0	+
#Deleted in new
chr19	31548507	31548570	ENSG00000267407.1|AC008794.1|lncRNA|chr19:31548507:31548570:+	0	+
#Deleted in new
chr19	3155017	3155175	ENSG00000267551.3|AC005264.1|lncRNA|chr19:3155017:3155175:-	0	-
#Deleted in new
chr1	93158814	93158885	ENSG00000117500.12|TMED5|pc|chr1:93158814:93158885:-	0	-
#Deleted in new
chr19	31588195	31588316	ENSG00000267465.6|AC011525.2|lncRNA|chr19:31588195:31588316:+	0	+
#Deleted in new
chr19	31588254	31588316	ENSG00000267465.6|AC011525.2|lncRNA|chr19:31588254:31588316:+	0	+
#Deleted in new
chr19	31588817	31588948	ENSG00000267465.6|AC011525.2|lncRNA|chr19:31588817:31588948:+	0	+
#Partially deleted in new
chr1	93160128	93163210	ENSG00000117500.12|TMED5|pc|chr1:93160128:93163210:-	0	-
#Partially deleted in new
chr19	3162792	3163769	ENSG00000060558.3|GNA15|pc|chr19:3162792:3163769:+	0	+
#Deleted in new
chr19	3172345	3172444	ENSG00000125910.5|S1PR4|pc|chr19:3172345:3172444:+	0	+
#Deleted in new
chr19	31859102	31859312	ENSG00000267489.3|LINC01837|lncRNA|chr19:31859102:31859312:-	0	-
#Deleted in new
chr19	31859871	31859943	ENSG00000267489.3|LINC01837|lncRNA|chr19:31859871:31859943:-	0	-
#Deleted in new
chr19	31922728	31922910	ENSG00000267489.3|LINC01837|lncRNA|chr19:31922728:31922910:-	0	-
#Deleted in new
chr19	31922883	31922910	ENSG00000267489.3|LINC01837|lncRNA|chr19:31922883:31922910:-	0	-
#Deleted in new
chr19	31937150	31937301	ENSG00000267489.3|LINC01837|lncRNA|chr19:31937150:31937301:-	0	-
#Deleted in new
chr19	31937215	31937301	ENSG00000267489.3|LINC01837|lncRNA|chr19:31937215:31937301:-	0	-
#Deleted in new
chr19	31941620	31941662	ENSG00000267489.3|LINC01837|lncRNA|chr19:31941620:31941662:-	0	-
#Deleted in new
chr19	32002490	32002772	ENSG00000267489.3|LINC01837|lncRNA|chr19:32002490:32002772:-	0	-
#Partially deleted in new
chr19	32010423	32010556	ENSG00000267489.3|LINC01837|lncRNA|chr19:32010423:32010556:-	0	-
#Deleted in new
chr19	32025714	32025777	ENSG00000267489.3|LINC01837|lncRNA|chr19:32025714:32025777:-	0	-
#Deleted in new
chr19	32025714	32025791	ENSG00000267489.3|LINC01837|lncRNA|chr19:32025714:32025791:-	0	-
#Deleted in new
chr19	32025861	32026007	ENSG00000267779.5|LINC01533|lncRNA|chr19:32025861:32026007:+	0	+
#Deleted in new
chr19	32025894	32026007	ENSG00000267779.5|LINC01533|lncRNA|chr19:32025894:32026007:+	0	+
#Deleted in new
chr19	32025981	32026007	ENSG00000267779.5|LINC01533|lncRNA|chr19:32025981:32026007:+	0	+
#Deleted in new
chr19	32071855	32071927	ENSG00000267489.3|LINC01837|lncRNA|chr19:32071855:32071927:-	0	-
#Partially deleted in new
chr19	3207628	3207850	ENSG00000125912.10|NCLN|pc|chr19:3207628:3207850:+	0	+
#Partially deleted in new
chr19	3207628	3207856	ENSG00000125912.10|NCLN|pc|chr19:3207628:3207856:+	0	+
#Partially deleted in new
chr19	3207628	3209570	ENSG00000125912.10|NCLN|pc|chr19:3207628:3209570:+	0	+
#Partially deleted in new
chr19	3207628	3209575	ENSG00000125912.10|NCLN|pc|chr19:3207628:3209575:+	0	+
#Deleted in new
chr19	3209234	3209571	ENSG00000125912.10|NCLN|pc|chr19:3209234:3209571:+	0	+
#Deleted in new
chr19	3209477	3209575	ENSG00000125912.10|NCLN|pc|chr19:3209477:3209575:+	0	+
#Deleted in new
chr19	32102291	32102501	ENSG00000267204.1|LINC01782|lncRNA|chr19:32102291:32102501:-	0	-
#Deleted in new
chr19	32404990	32405560	ENSG00000267213.4|AC007773.1|lncRNA|chr19:32404990:32405560:-	0	-
#Deleted in new
chr19	32406124	32406302	ENSG00000178904.18|DPY19L3|pc|chr19:32406124:32406302:+	0	+
#Deleted in new
chr19	32406188	32406302	ENSG00000178904.18|DPY19L3|pc|chr19:32406188:32406302:+	0	+
#Partially deleted in new
chr19	32411238	32413187	ENSG00000178904.18|DPY19L3|pc|chr19:32411238:32413187:+	0	+
#Deleted in new
chr19	32427996	32428061	ENSG00000178904.18|DPY19L3|pc|chr19:32427996:32428061:+	0	+
#Partially deleted in new
chr19	32481040	32481940	ENSG00000178904.18|DPY19L3|pc|chr19:32481040:32481940:+	0	+
#Deleted in new
chr1	93262185	93262361	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93262185:93262361:-	0	-
#Partially deleted in new
chr19	32637299	32639488	ENSG00000105186.15|ANKRD27|pc|chr19:32637299:32639488:-	0	-
#Deleted in new
chr19	32666297	32666426	ENSG00000267557.1|AC008474.1|lncRNA|chr19:32666297:32666426:+	0	+
#Deleted in new
chr19	32687088	32687268	ENSG00000267475.1|AC008736.1|lncRNA|chr19:32687088:32687268:-	0	-
#Deleted in new
chr19	3270613	3270670	ENSG00000161082.12|CELF5|pc|chr19:3270613:3270670:+	0	+
#Deleted in new
chr19	3270620	3270670	ENSG00000161082.12|CELF5|pc|chr19:3270620:3270670:+	0	+
#Partially deleted in new
chr19	32711751	32713796	ENSG00000213965.3|NUDT19|pc|chr19:32711751:32713796:+	0	+
#Deleted in new
chr19	32718297	32718565	ENSG00000267567.1|AC008736.2|lncRNA|chr19:32718297:32718565:-	0	-
#Deleted in new
chr19	32719347	32719595	ENSG00000267567.1|AC008736.2|lncRNA|chr19:32719347:32719595:-	0	-
#Partially deleted in new
chr19	32719752	32720096	ENSG00000173809.17|TDRD12|pc|chr19:32719752:32720096:+	0	+
#Deleted in new
chr1	93273473	93273583	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93273473:93273583:-	0	-
#Deleted in new
chr19	32818088	32818157	ENSG00000173809.17|TDRD12|pc|chr19:32818088:32818157:+	0	+
#Deleted in new
chr19	32831294	32831331	ENSG00000267555.1|AC008805.2|lncRNA|chr19:32831294:32831331:+	0	+
#Partially deleted in new
chr19	3286223	3286791	ENSG00000161082.12|CELF5|pc|chr19:3286223:3286791:+	0	+
#Deleted in new
chr19	32875924	32876217	ENSG00000121289.17|CEP89|pc|chr19:32875924:32876217:-	0	-
#Deleted in new
chr19	32878217	32878421	ENSG00000121289.17|CEP89|pc|chr19:32878217:32878421:-	0	-
#Deleted in new
chr1	93290564	93290686	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93290564:93290686:-	0	-
#Deleted in new
chr19	32937012	32937120	ENSG00000121289.17|CEP89|pc|chr19:32937012:32937120:-	0	-
#Deleted in new
chr19	32968908	32971655	ENSG00000121289.17|CEP89|pc|chr19:32968908:32971655:-	0	-
#Deleted in new
chr19	32971172	32971649	ENSG00000121289.17|CEP89|pc|chr19:32971172:32971649:-	0	-
#Deleted in new
chr19	32977496	32977933	ENSG00000131944.9|FAAP24|pc|chr19:32977496:32977933:+	0	+
#Deleted in new
chr19	32991333	32991417	ENSG00000131941.7|RHPN2|pc|chr19:32991333:32991417:-	0	-
#Deleted in new
chr19	330263	330380	ENSG00000105556.11|MIER2|pc|chr19:330263:330380:-	0	-
#Deleted in new
chr19	3302789	3302970	ENSG00000267448.5|AC010649.1|lncRNA|chr19:3302789:3302970:-	0	-
#Deleted in new
chr19	3302793	3302921	ENSG00000267448.5|AC010649.1|lncRNA|chr19:3302793:3302921:-	0	-
#Deleted in new
chr19	3302795	3303003	ENSG00000267448.5|AC010649.1|lncRNA|chr19:3302795:3303003:-	0	-
#Deleted in new
chr1	93305110	93305470	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93305110:93305470:-	0	-
#Deleted in new
chr1	93305387	93305470	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93305387:93305470:-	0	-
#Deleted in new
chr1	93309539	93309634	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93309539:93309634:-	0	-
#Deleted in new
chr1	93309714	93309763	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93309714:93309763:-	0	-
#Deleted in new
chr1	93309714	93309770	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93309714:93309770:-	0	-
#Deleted in new
chr1	93309714	93309790	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93309714:93309790:-	0	-
#Deleted in new
chr1	93309752	93309790	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93309752:93309790:-	0	-
#Deleted in new
chr19	33100172	33100274	ENSG00000076650.6|GPATCH1|pc|chr19:33100172:33100274:+	0	+
#Deleted in new
chr1	93311168	93311608	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93311168:93311608:-	0	-
#Deleted in new
chr1	93311279	93311608	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93311279:93311608:-	0	-
#Deleted in new
chr1	93311484	93311608	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93311484:93311608:-	0	-
#Deleted in new
chr19	33142776	33142780	ENSG00000166359.10|WDR88|pc|chr19:33142776:33142780:+	0	+
#Deleted in new
chr1	93315148	93315173	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93315148:93315173:-	0	-
#Deleted in new
chr1	93315148	93315269	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93315148:93315269:-	0	-
#Deleted in new
chr1	93315215	93315268	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93315215:93315268:-	0	-
#Deleted in new
chr19	33174181	33174296	ENSG00000166359.10|WDR88|pc|chr19:33174181:33174296:+	0	+
#Deleted in new
chr19	33178055	33178284	ENSG00000267054.1|AC008738.1|lncRNA|chr19:33178055:33178284:+	0	+
#Deleted in new
chr19	33178505	33178651	ENSG00000267054.1|AC008738.1|lncRNA|chr19:33178505:33178651:+	0	+
#Deleted in new
chr1	93318167	93318228	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93318167:93318228:-	0	-
#Deleted in new
chr1	93324634	93324649	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93324634:93324649:-	0	-
#Deleted in new
chr1	93324634	93324691	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93324634:93324691:-	0	-
#Deleted in new
chr1	93324634	93324729	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93324634:93324729:-	0	-
#Deleted in new
chr1	93324705	93324729	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93324705:93324729:-	0	-
#Deleted in new
chr1	93325768	93325895	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93325768:93325895:-	0	-
#Deleted in new
chr1	93325818	93325895	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93325818:93325895:-	0	-
#Deleted in new
chr1	93326601	93326662	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93326601:93326662:-	0	-
#Deleted in new
chr19	33283977	33284239	ENSG00000270212.1|AC008738.6|lncRNA|chr19:33283977:33284239:-	0	-
#Deleted in new
chr19	33309279	33309387	ENSG00000267130.1|AC008738.2|lncRNA|chr19:33309279:33309387:+	0	+
#Deleted in new
chr1	93333342	93333398	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93333342:93333398:-	0	-
#Deleted in new
chr1	93337376	93337392	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93337376:93337392:-	0	-
#Deleted in new
chr1	93337376	93337437	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93337376:93337437:-	0	-
#Deleted in new
chr1	93337376	93337469	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93337376:93337469:-	0	-
#Deleted in new
chr1	93337376	93337512	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93337376:93337512:-	0	-
#Deleted in new
chr1	93337376	93337565	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93337376:93337565:-	0	-
#Deleted in new
chr1	93337376	93339274	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93337376:93339274:-	0	-
#Deleted in new
chr1	93338229	93338268	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93338229:93338268:-	0	-
#Deleted in new
chr1	93338373	93338531	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93338373:93338531:-	0	-
#Deleted in new
chr1	93338373	93338534	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93338373:93338534:-	0	-
#Deleted in new
chr1	93338694	93339274	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93338694:93339274:-	0	-
#Deleted in new
chr1	93338914	93339274	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93338914:93339274:-	0	-
#Deleted in new
chr1	93338928	93339274	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93338928:93339274:-	0	-
#Deleted in new
chr1	93338937	93339536	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93338937:93339536:-	0	-
#Deleted in new
chr1	93338938	93339274	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93338938:93339274:-	0	-
#Deleted in new
chr1	93339155	93339274	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93339155:93339274:-	0	-
#Deleted in new
chr1	93339356	93339374	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93339356:93339374:-	0	-
#Deleted in new
chr1	93339356	93339536	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93339356:93339536:-	0	-
#Deleted in new
chr1	93339648	93339679	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93339648:93339679:-	0	-
#Partially deleted in new
chr1	93345539	93345590	ENSG00000223745.7|CCDC18-AS1|lncRNA|chr1:93345539:93345590:-	0	-
#Deleted in new
chr1	93354974	93355775	ENSG00000117505.12|DR1|pc|chr1:93354974:93355775:+	0	+
#Deleted in new
chr19	3355553	3355955	ENSG00000280103.1|AC007792.1|lncRNA|chr19:3355553:3355955:-	0	-
#Partially deleted in new
chr19	33555567	33556171	ENSG00000266985.1|AC010485.1|lncRNA|chr19:33555567:33556171:+	0	+
#Deleted in new
chr19	3371394	3371602	ENSG00000279599.1|AC005514.1|lncRNA|chr19:3371394:3371602:+	0	+
#Deleted in new
chr19	33744330	33744484	ENSG00000124302.12|CHST8|pc|chr19:33744330:33744484:+	0	+
#Deleted in new
chr19	340513	340599	ENSG00000105556.11|MIER2|pc|chr19:340513:340599:-	0	-
#Deleted in new
chr19	3410595	3411178	ENSG00000141905.18|NFIC|pc|chr19:3410595:3411178:+	0	+
#Deleted in new
chr19	34195218	34195320	ENSG00000257103.8|LSM14A|pc|chr19:34195218:34195320:+	0	+
#Deleted in new
chr19	34285149	34285273	ENSG00000166398.12|KIAA0355|pc|chr19:34285149:34285273:+	0	+
#Deleted in new
chr19	34348355	34348420	ENSG00000267219.1|AC010504.1|lncRNA|chr19:34348355:34348420:-	0	-
#Partially deleted in new
chr19	34348461	34349153	ENSG00000166398.12|KIAA0355|pc|chr19:34348461:34349153:+	0	+
#Deleted in new
chr19	34358484	34358916	ENSG00000267219.1|AC010504.1|lncRNA|chr19:34358484:34358916:-	0	-
#Partially deleted in new
chr19	34364739	34365019	ENSG00000105220.14|GPI|pc|chr19:34364739:34365019:+	0	+
#Partially deleted in new
chr19	34364809	34365019	ENSG00000105220.14|GPI|pc|chr19:34364809:34365019:+	0	+
#Partially deleted in new
chr19	34399900	34402156	ENSG00000105220.14|GPI|pc|chr19:34399900:34402156:+	0	+
#Deleted in new
chr19	34498561	34498629	ENSG00000142279.12|WTIP|pc|chr19:34498561:34498629:+	0	+
#Split in new
chr19	34500128	34512304	ENSG00000142279.12|WTIP|pc|chr19:34500128:34512304:+	0	+
#Deleted in new
chr19	3453762	3453916	ENSG00000141905.18|NFIC|pc|chr19:3453762:3453916:+	0	+
#Deleted in new
chr19	3453762	3454350	ENSG00000141905.18|NFIC|pc|chr19:3453762:3454350:+	0	+
#Deleted in new
chr19	34576732	34576940	ENSG00000268751.1|SCGB1B2P|lncRNA|chr19:34576732:34576940:-	0	-
#Deleted in new
chr19	34576732	34576994	ENSG00000268751.1|SCGB1B2P|lncRNA|chr19:34576732:34576994:-	0	-
#Deleted in new
chr19	34577265	34577456	ENSG00000268751.1|SCGB1B2P|lncRNA|chr19:34577265:34577456:-	0	-
#Deleted in new
chr19	34577265	34577460	ENSG00000268751.1|SCGB1B2P|lncRNA|chr19:34577265:34577460:-	0	-
#Deleted in new
chr19	34577542	34577701	ENSG00000268751.1|SCGB1B2P|lncRNA|chr19:34577542:34577701:-	0	-
#Deleted in new
chr19	3457882	3457989	ENSG00000141905.18|NFIC|pc|chr19:3457882:3457989:+	0	+
#Deleted in new
chr19	34593328	34593599	ENSG00000205209.7|SCGB2B2|pc|chr19:34593328:34593599:-	0	-
#Deleted in new
chr19	34593441	34593599	ENSG00000205209.7|SCGB2B2|pc|chr19:34593441:34593599:-	0	-
#Deleted in new
chr19	34594174	34594359	ENSG00000205209.7|SCGB2B2|pc|chr19:34594174:34594359:-	0	-
#Deleted in new
chr19	34594502	34594585	ENSG00000205209.7|SCGB2B2|pc|chr19:34594502:34594585:-	0	-
#Partially deleted in new
chr19	34594502	34596594	ENSG00000205209.7|SCGB2B2|pc|chr19:34594502:34596594:-	0	-
#Deleted in new
chr19	34608686	34608755	ENSG00000205209.7|SCGB2B2|pc|chr19:34608686:34608755:-	0	-
#Deleted in new
chr19	34632007	34632051	ENSG00000205209.7|SCGB2B2|pc|chr19:34632007:34632051:-	0	-
#Deleted in new
chr19	34638121	34638254	ENSG00000268683.1|AC020910.1|lncRNA|chr19:34638121:34638254:-	0	-
#Partially deleted in new
chr19	34640409	34640689	ENSG00000268683.1|AC020910.1|lncRNA|chr19:34640409:34640689:-	0	-
#Deleted in new
chr19	34645379	34646838	ENSG00000279971.1|AC020910.6|lncRNA|chr19:34645379:34646838:+	0	+
#Deleted in new
chr19	34675629	34675699	ENSG00000205209.7|SCGB2B2|pc|chr19:34675629:34675699:-	0	-
#Deleted in new
chr19	34675716	34677581	ENSG00000279329.1|AC020910.5|lncRNA|chr19:34675716:34677581:-	0	-
#Deleted in new
chr19	34677638	34677856	ENSG00000089335.20|ZNF302|pc|chr19:34677638:34677856:+	0	+
#Deleted in new
chr19	34677638	34678103	ENSG00000089335.20|ZNF302|pc|chr19:34677638:34678103:+	0	+
#Deleted in new
chr19	34677646	34677796	ENSG00000089335.20|ZNF302|pc|chr19:34677646:34677796:+	0	+
#Deleted in new
chr19	34677646	34677856	ENSG00000089335.20|ZNF302|pc|chr19:34677646:34677856:+	0	+
#Deleted in new
chr19	34677653	34677862	ENSG00000089335.20|ZNF302|pc|chr19:34677653:34677862:+	0	+
#Deleted in new
chr19	34677661	34677833	ENSG00000089335.20|ZNF302|pc|chr19:34677661:34677833:+	0	+
#Deleted in new
chr19	34677677	34677754	ENSG00000089335.20|ZNF302|pc|chr19:34677677:34677754:+	0	+
#Deleted in new
chr19	34677677	34678103	ENSG00000089335.20|ZNF302|pc|chr19:34677677:34678103:+	0	+
#Deleted in new
chr19	34677688	34677856	ENSG00000089335.20|ZNF302|pc|chr19:34677688:34677856:+	0	+
#Deleted in new
chr19	34677701	34677856	ENSG00000089335.20|ZNF302|pc|chr19:34677701:34677856:+	0	+
#Deleted in new
chr19	34677706	34677796	ENSG00000089335.20|ZNF302|pc|chr19:34677706:34677796:+	0	+
#Deleted in new
chr19	34677716	34677856	ENSG00000089335.20|ZNF302|pc|chr19:34677716:34677856:+	0	+
#Deleted in new
chr19	34677835	34678103	ENSG00000089335.20|ZNF302|pc|chr19:34677835:34678103:+	0	+
#Deleted in new
chr19	34678736	34678813	ENSG00000089335.20|ZNF302|pc|chr19:34678736:34678813:+	0	+
#Deleted in new
chr19	34679827	34679959	ENSG00000089335.20|ZNF302|pc|chr19:34679827:34679959:+	0	+
#Partially deleted in new
chr19	34681282	34682897	ENSG00000089335.20|ZNF302|pc|chr19:34681282:34682897:+	0	+
#Deleted in new
chr19	34683991	34684137	ENSG00000089335.20|ZNF302|pc|chr19:34683991:34684137:+	0	+
#Deleted in new
chr19	34683991	34684169	ENSG00000089335.20|ZNF302|pc|chr19:34683991:34684169:+	0	+
#Deleted in new
chr19	34683991	34684172	ENSG00000089335.20|ZNF302|pc|chr19:34683991:34684172:+	0	+
#Deleted in new
chr19	34733297	34733837	ENSG00000274104.1|AC020910.4|lncRNA|chr19:34733297:34733837:-	0	-
#Deleted in new
chr19	34734154	34734360	ENSG00000197841.14|ZNF181|pc|chr19:34734154:34734360:+	0	+
#Deleted in new
chr19	34734155	34734255	ENSG00000197841.14|ZNF181|pc|chr19:34734155:34734255:+	0	+
#Deleted in new
chr19	34734193	34735046	ENSG00000197841.14|ZNF181|pc|chr19:34734193:34735046:+	0	+
#Deleted in new
chr19	34734245	34734310	ENSG00000197841.14|ZNF181|pc|chr19:34734245:34734310:+	0	+
#Deleted in new
chr19	34734262	34734360	ENSG00000197841.14|ZNF181|pc|chr19:34734262:34734360:+	0	+
#Deleted in new
chr19	34734574	34735046	ENSG00000197841.14|ZNF181|pc|chr19:34734574:34735046:+	0	+
#Deleted in new
chr19	34734948	34735046	ENSG00000197841.14|ZNF181|pc|chr19:34734948:34735046:+	0	+
#Deleted in new
chr19	34734969	34735046	ENSG00000197841.14|ZNF181|pc|chr19:34734969:34735046:+	0	+
#Deleted in new
chr19	34736074	34736206	ENSG00000197841.14|ZNF181|pc|chr19:34736074:34736206:+	0	+
#Split in new
chr19	34740610	34745378	ENSG00000197841.14|ZNF181|pc|chr19:34740610:34745378:+	0	+
#Deleted in new
chr19	34762794	34765641	ENSG00000153896.17|ZNF599|pc|chr19:34762794:34765641:-	0	-
#Deleted in new
chr19	34788581	34788674	ENSG00000267767.2|LINC01801|lncRNA|chr19:34788581:34788674:-	0	-
#Deleted in new
chr19	34791819	34791915	ENSG00000267767.2|LINC01801|lncRNA|chr19:34791819:34791915:-	0	-
#Deleted in new
chr19	34811588	34814345	ENSG00000261754.2|AC008555.1|lncRNA|chr19:34811588:34814345:-	0	-
#Partially deleted in new
chr19	34816156	34817490	ENSG00000267767.2|LINC01801|lncRNA|chr19:34816156:34817490:-	0	-
#Partially deleted in new
chr19	34816561	34816900	ENSG00000267767.2|LINC01801|lncRNA|chr19:34816561:34816900:-	0	-
#Deleted in new
chr19	34818586	34818766	ENSG00000267767.2|LINC01801|lncRNA|chr19:34818586:34818766:-	0	-
#Deleted in new
chr19	34829163	34829253	ENSG00000267767.2|LINC01801|lncRNA|chr19:34829163:34829253:-	0	-
#Deleted in new
chr19	34830405	34830526	ENSG00000267767.2|LINC01801|lncRNA|chr19:34830405:34830526:-	0	-
#Deleted in new
chr19	34832329	34832536	ENSG00000267767.2|LINC01801|lncRNA|chr19:34832329:34832536:-	0	-
#Deleted in new
chr19	34832724	34832869	ENSG00000267767.2|LINC01801|lncRNA|chr19:34832724:34832869:-	0	-
#Deleted in new
chr19	34837888	34837995	ENSG00000269086.2|AC008555.2|lncRNA|chr19:34837888:34837995:+	0	+
#Deleted in new
chr19	34838177	34838301	ENSG00000269086.2|AC008555.2|lncRNA|chr19:34838177:34838301:+	0	+
#Deleted in new
chr19	34838407	34838484	ENSG00000269086.2|AC008555.2|lncRNA|chr19:34838407:34838484:+	0	+
#Deleted in new
chr19	34838661	34838788	ENSG00000269086.2|AC008555.2|lncRNA|chr19:34838661:34838788:+	0	+
#Deleted in new
chr19	34839181	34839392	ENSG00000269086.2|AC008555.2|lncRNA|chr19:34839181:34839392:+	0	+
#Deleted in new
chr19	34839598	34839786	ENSG00000269086.2|AC008555.2|lncRNA|chr19:34839598:34839786:+	0	+
#Deleted in new
chr19	34839598	34840221	ENSG00000269086.2|AC008555.2|lncRNA|chr19:34839598:34840221:+	0	+
#Deleted in new
chr19	34841025	34841681	ENSG00000269086.2|AC008555.2|lncRNA|chr19:34841025:34841681:+	0	+
#Deleted in new
chr19	34841725	34841848	ENSG00000269086.2|AC008555.2|lncRNA|chr19:34841725:34841848:+	0	+
#Deleted in new
chr19	34848965	34849132	ENSG00000269086.2|AC008555.2|lncRNA|chr19:34848965:34849132:+	0	+
#Deleted in new
chr19	34849277	34849549	ENSG00000271109.1|AC008555.5|lncRNA|chr19:34849277:34849549:-	0	-
#Deleted in new
chr19	34850627	34850794	ENSG00000271109.1|AC008555.5|lncRNA|chr19:34850627:34850794:-	0	-
#Deleted in new
chr19	34850668	34850794	ENSG00000271109.1|AC008555.5|lncRNA|chr19:34850668:34850794:-	0	-
#Split in new
chr19	34850691	34855304	ENSG00000269086.2|AC008555.2|lncRNA|chr19:34850691:34855304:+	0	+
#Deleted in new
chr19	34860173	34860290	ENSG00000271109.1|AC008555.5|lncRNA|chr19:34860173:34860290:-	0	-
#Deleted in new
chr19	34860173	34860576	ENSG00000271109.1|AC008555.5|lncRNA|chr19:34860173:34860576:-	0	-
#Deleted in new
chr19	34892028	34892296	ENSG00000271649.1|LINC00904|lncRNA|chr19:34892028:34892296:-	0	-
#Deleted in new
chr19	34893343	34893456	ENSG00000271649.1|LINC00904|lncRNA|chr19:34893343:34893456:-	0	-
#Deleted in new
chr19	34898853	34898943	ENSG00000271649.1|LINC00904|lncRNA|chr19:34898853:34898943:-	0	-
#Deleted in new
chr19	34902201	34902479	ENSG00000270544.1|AC008555.3|lncRNA|chr19:34902201:34902479:-	0	-
#Deleted in new
chr19	34902964	34903083	ENSG00000270544.1|AC008555.3|lncRNA|chr19:34902964:34903083:-	0	-
#Deleted in new
chr19	34904150	34904195	ENSG00000270544.1|AC008555.3|lncRNA|chr19:34904150:34904195:-	0	-
#Deleted in new
chr19	34904391	34904752	ENSG00000271171.1|AC008555.6|lncRNA|chr19:34904391:34904752:-	0	-
#Deleted in new
chr19	34904960	34905057	ENSG00000271171.1|AC008555.6|lncRNA|chr19:34904960:34905057:-	0	-
#Deleted in new
chr19	34905314	34906224	ENSG00000269037.1|LINC01838|lncRNA|chr19:34905314:34906224:+	0	+
#Deleted in new
chr19	34907441	34908188	ENSG00000269037.1|LINC01838|lncRNA|chr19:34907441:34908188:+	0	+
#Deleted in new
chr19	34923298	34923839	ENSG00000270876.1|ZNF30-AS1|lncRNA|chr19:34923298:34923839:-	0	-
#Deleted in new
chr19	34926728	34926812	ENSG00000270876.1|ZNF30-AS1|lncRNA|chr19:34926728:34926812:-	0	-
#Deleted in new
chr19	34926902	34927216	ENSG00000168661.14|ZNF30|pc|chr19:34926902:34927216:+	0	+
#Deleted in new
chr19	34926902	34927282	ENSG00000168661.14|ZNF30|pc|chr19:34926902:34927282:+	0	+
#Deleted in new
chr19	34926909	34927282	ENSG00000168661.14|ZNF30|pc|chr19:34926909:34927282:+	0	+
#Deleted in new
chr19	34926979	34927216	ENSG00000168661.14|ZNF30|pc|chr19:34926979:34927216:+	0	+
#Deleted in new
chr19	34927043	34927216	ENSG00000168661.14|ZNF30|pc|chr19:34927043:34927216:+	0	+
#Deleted in new
chr19	34942593	34942673	ENSG00000168661.14|ZNF30|pc|chr19:34942593:34942673:+	0	+
#Deleted in new
chr19	34949037	34951205	ENSG00000280106.1|AC008555.8|lncRNA|chr19:34949037:34951205:-	0	-
#Deleted in new
chr19	34963629	34964049	ENSG00000180884.9|ZNF792|pc|chr19:34963629:34964049:-	0	-
#Deleted in new
chr19	34998232	34998601	ENSG00000269303.1|AC020907.3|lncRNA|chr19:34998232:34998601:-	0	-
#Partially deleted in new
chr19	35000075	35000170	ENSG00000269303.1|AC020907.3|lncRNA|chr19:35000075:35000170:-	0	-
#Deleted in new
chr19	35002421	35002543	ENSG00000089351.14|GRAMD1A|pc|chr19:35002421:35002543:+	0	+
#Deleted in new
chr19	35014960	35015052	ENSG00000271032.1|AC020907.4|lncRNA|chr19:35014960:35015052:-	0	-
#Partially deleted in new
chr19	35014968	35015967	ENSG00000089351.14|GRAMD1A|pc|chr19:35014968:35015967:+	0	+
#Deleted in new
chr19	35024901	35025335	ENSG00000271032.1|AC020907.4|lncRNA|chr19:35024901:35025335:-	0	-
#Partially deleted in new
chr19	35059058	35059778	ENSG00000227392.1|HPN-AS1|lncRNA|chr19:35059058:35059778:-	0	-
#Deleted in new
chr19	35059142	35059385	ENSG00000105707.13|HPN|pc|chr19:35059142:35059385:+	0	+
#Deleted in new
chr19	35099204	35099387	ENSG00000227392.1|HPN-AS1|lncRNA|chr19:35099204:35099387:-	0	-
#Deleted in new
chr19	35118026	35118124	ENSG00000089356.18|FXYD3|pc|chr19:35118026:35118124:+	0	+
#Partially deleted in new
chr19	35119362	35119888	ENSG00000089356.18|FXYD3|pc|chr19:35119362:35119888:+	0	+
#Deleted in new
chr19	35159515	35159999	ENSG00000089327.14|FXYD5|pc|chr19:35159515:35159999:+	0	+
#Deleted in new
chr19	35164034	35164245	ENSG00000089327.14|FXYD5|pc|chr19:35164034:35164245:+	0	+
#Deleted in new
chr19	35164155	35164245	ENSG00000089327.14|FXYD5|pc|chr19:35164155:35164245:+	0	+
#Deleted in new
chr19	35253281	35253639	ENSG00000271366.1|AC002128.2|lncRNA|chr19:35253281:35253639:-	0	-
#Partially deleted in new
chr19	35262845	35263098	ENSG00000268947.1|AC002128.1|lncRNA|chr19:35262845:35263098:+	0	+
#Deleted in new
chr19	35264041	35264804	ENSG00000268947.1|AC002128.1|lncRNA|chr19:35264041:35264804:+	0	+
#Deleted in new
chr19	35275081	35275425	ENSG00000105698.15|USF2|pc|chr19:35275081:35275425:+	0	+
#Deleted in new
chr19	35280715	35280927	ENSG00000105697.7|HAMP|pc|chr19:35280715:35280927:+	0	+
#Partially deleted in new
chr19	35282516	35285140	ENSG00000105697.7|HAMP|pc|chr19:35282516:35285140:+	0	+
#Partially deleted in new
chr19	35295454	35295510	ENSG00000105695.14|MAG|pc|chr19:35295454:35295510:+	0	+
#Partially deleted in new
chr19	35319370	35319432	ENSG00000012124.16|CD22|pc|chr19:35319370:35319432:+	0	+
#Deleted in new
chr19	35328663	35328850	ENSG00000012124.16|CD22|pc|chr19:35328663:35328850:+	0	+
#Partially deleted in new
chr19	35330842	35331064	ENSG00000269553.1|U62631.1|lncRNA|chr19:35330842:35331064:+	0	+
#Deleted in new
chr19	35331707	35331920	ENSG00000269553.1|U62631.1|lncRNA|chr19:35331707:35331920:+	0	+
#Partially deleted in new
chr19	3533293	3533748	ENSG00000105325.13|FZR1|pc|chr19:3533293:3533748:+	0	+
#Partially deleted in new
chr19	3534794	3538330	ENSG00000105325.13|FZR1|pc|chr19:3534794:3538330:+	0	+
#Deleted in new
chr19	3538260	3538756	ENSG00000161091.12|MFSD12|pc|chr19:3538260:3538756:-	0	-
#Deleted in new
chr19	3538274	3538756	ENSG00000161091.12|MFSD12|pc|chr19:3538274:3538756:-	0	-
#Partially deleted in new
chr19	3538274	3540043	ENSG00000161091.12|MFSD12|pc|chr19:3538274:3540043:-	0	-
#Deleted in new
chr19	3538649	3538756	ENSG00000161091.12|MFSD12|pc|chr19:3538649:3538756:-	0	-
#Deleted in new
chr19	3539353	3540041	ENSG00000161091.12|MFSD12|pc|chr19:3539353:3540041:-	0	-
#Deleted in new
chr19	35399510	35399657	ENSG00000205786.8|LINC01531|lncRNA|chr19:35399510:35399657:+	0	+
#Deleted in new
chr19	35399530	35399657	ENSG00000205786.8|LINC01531|lncRNA|chr19:35399530:35399657:+	0	+
#Deleted in new
chr19	35399547	35399657	ENSG00000205786.8|LINC01531|lncRNA|chr19:35399547:35399657:+	0	+
#Deleted in new
chr19	35399580	35399657	ENSG00000205786.8|LINC01531|lncRNA|chr19:35399580:35399657:+	0	+
#Deleted in new
chr19	35399581	35399657	ENSG00000205786.8|LINC01531|lncRNA|chr19:35399581:35399657:+	0	+
#Deleted in new
chr19	35401058	35401117	ENSG00000205786.8|LINC01531|lncRNA|chr19:35401058:35401117:+	0	+
#Deleted in new
chr19	35405606	35405681	ENSG00000205786.8|LINC01531|lncRNA|chr19:35405606:35405681:+	0	+
#Deleted in new
chr19	35406584	35406697	ENSG00000205786.8|LINC01531|lncRNA|chr19:35406584:35406697:+	0	+
#Partially deleted in new
chr19	35406584	35409151	ENSG00000205786.8|LINC01531|lncRNA|chr19:35406584:35409151:+	0	+
#Deleted in new
chr19	35407080	35407199	ENSG00000205786.8|LINC01531|lncRNA|chr19:35407080:35407199:+	0	+
#Deleted in new
chr19	35407439	35407561	ENSG00000205786.8|LINC01531|lncRNA|chr19:35407439:35407561:+	0	+
#Deleted in new
chr19	35408824	35409151	ENSG00000205786.8|LINC01531|lncRNA|chr19:35408824:35409151:+	0	+
#Deleted in new
chr19	35408998	35409151	ENSG00000205786.8|LINC01531|lncRNA|chr19:35408998:35409151:+	0	+
#Deleted in new
chr19	35409285	35409472	ENSG00000205786.8|LINC01531|lncRNA|chr19:35409285:35409472:+	0	+
#Deleted in new
chr19	35409285	35409493	ENSG00000205786.8|LINC01531|lncRNA|chr19:35409285:35409493:+	0	+
#Deleted in new
chr19	35409285	35409600	ENSG00000205786.8|LINC01531|lncRNA|chr19:35409285:35409600:+	0	+
#Deleted in new
chr19	35411161	35411282	ENSG00000205786.8|LINC01531|lncRNA|chr19:35411161:35411282:+	0	+
#Deleted in new
chr19	35415306	35415541	ENSG00000205786.8|LINC01531|lncRNA|chr19:35415306:35415541:+	0	+
#Deleted in new
chr19	35416478	35416840	ENSG00000205786.8|LINC01531|lncRNA|chr19:35416478:35416840:+	0	+
#Deleted in new
chr19	35419159	35419370	ENSG00000205786.8|LINC01531|lncRNA|chr19:35419159:35419370:+	0	+
#Deleted in new
chr19	35419175	35419385	ENSG00000205786.8|LINC01531|lncRNA|chr19:35419175:35419385:+	0	+
#Deleted in new
chr19	35424061	35424450	ENSG00000233214.1|AC002511.2|lncRNA|chr19:35424061:35424450:-	0	-
#Deleted in new
chr19	35424591	35424652	ENSG00000233214.1|AC002511.2|lncRNA|chr19:35424591:35424652:-	0	-
#Deleted in new
chr19	3542775	3542977	ENSG00000161091.12|MFSD12|pc|chr19:3542775:3542977:-	0	-
#Partially deleted in new
chr19	3542775	3543382	ENSG00000161091.12|MFSD12|pc|chr19:3542775:3543382:-	0	-
#Deleted in new
chr19	35432956	35433102	ENSG00000232680.2|AC002511.1|lncRNA|chr19:35432956:35433102:-	0	-
#Deleted in new
chr19	35433588	35433833	ENSG00000232680.2|AC002511.1|lncRNA|chr19:35433588:35433833:-	0	-
#Deleted in new
chr19	35433940	35434111	ENSG00000232680.2|AC002511.1|lncRNA|chr19:35433940:35434111:-	0	-
#Deleted in new
chr19	35434204	35434642	ENSG00000232680.2|AC002511.1|lncRNA|chr19:35434204:35434642:-	0	-
#Deleted in new
chr19	3544198	3544307	ENSG00000161091.12|MFSD12|pc|chr19:3544198:3544307:-	0	-
#Deleted in new
chr19	3544198	3544654	ENSG00000267436.1|AC005786.3|lncRNA|chr19:3544198:3544654:+	0	+
#Partially deleted in new
chr19	3544198	3544732	ENSG00000161091.12|MFSD12|pc|chr19:3544198:3544732:-	0	-
#Deleted in new
chr19	3544199	3544309	ENSG00000161091.12|MFSD12|pc|chr19:3544199:3544309:-	0	-
#Partially deleted in new
chr19	3544354	3544732	ENSG00000161091.12|MFSD12|pc|chr19:3544354:3544732:-	0	-
#Partially deleted in new
chr19	3544356	3544732	ENSG00000161091.12|MFSD12|pc|chr19:3544356:3544732:-	0	-
#Deleted in new
chr19	35443906	35443922	ENSG00000126262.4|FFAR2|pc|chr19:35443906:35443922:+	0	+
#Partially deleted in new
chr19	35506509	35506665	ENSG00000161249.20|DMKN|pc|chr19:35506509:35506665:-	0	-
#Deleted in new
chr19	35508204	35508240	ENSG00000161249.20|DMKN|pc|chr19:35508204:35508240:-	0	-
#Partially deleted in new
chr19	35509518	35509961	ENSG00000161249.20|DMKN|pc|chr19:35509518:35509961:-	0	-
#Partially deleted in new
chr19	35540737	35541584	ENSG00000236144.6|TMEM147-AS1|lncRNA|chr19:35540737:35541584:-	0	-
#Partially deleted in new
chr19	35540738	35541584	ENSG00000236144.6|TMEM147-AS1|lncRNA|chr19:35540738:35541584:-	0	-
#Deleted in new
chr19	35541293	35541584	ENSG00000236144.6|TMEM147-AS1|lncRNA|chr19:35541293:35541584:-	0	-
#Partially deleted in new
chr19	35557955	35558027	ENSG00000283907.1|AD000090.1|lncRNA|chr19:35557955:35558027:+	0	+
#Deleted in new
chr19	35575613	35575932	ENSG00000283907.1|AD000090.1|lncRNA|chr19:35575613:35575932:+	0	+
#Deleted in new
chr19	3558014	3558081	ENSG00000267231.1|AC005786.2|lncRNA|chr19:3558014:3558081:+	0	+
#Deleted in new
chr19	3558184	3558486	ENSG00000267231.1|AC005786.2|lncRNA|chr19:3558184:3558486:+	0	+
#Deleted in new
chr19	35581851	35581954	ENSG00000283907.1|AD000090.1|lncRNA|chr19:35581851:35581954:+	0	+
#Duplicated in new
chr19	35586259	35586541	ENSG00000283758.1|AC002115.2|pc|chr19:35586259:35586541:+	0	+
#Deleted in new
chr19	35597906	35597957	ENSG00000224910.1|LINC01766|lncRNA|chr19:35597906:35597957:+	0	+
#Partially deleted in new
chr19	35608284	35608803	ENSG00000267626.1|AC002115.1|lncRNA|chr19:35608284:35608803:-	0	-
#Partially deleted in new
chr19	35622875	35623557	ENSG00000249115.8|HAUS5|pc|chr19:35622875:35623557:+	0	+
#Partially deleted in new
chr19	35622875	35623609	ENSG00000249115.8|HAUS5|pc|chr19:35622875:35623609:+	0	+
#Partially deleted in new
chr19	35622875	35625349	ENSG00000249115.8|HAUS5|pc|chr19:35622875:35625349:+	0	+
#Deleted in new
chr19	35623057	35623608	ENSG00000249115.8|HAUS5|pc|chr19:35623057:35623608:+	0	+
#Deleted in new
chr19	3567144	3567242	ENSG00000161091.12|MFSD12|pc|chr19:3567144:3567242:-	0	-
#Deleted in new
chr19	35676235	35676333	ENSG00000105668.7|UPK1A|pc|chr19:35676235:35676333:+	0	+
#Deleted in new
chr19	3571571	3571655	ENSG00000161091.12|MFSD12|pc|chr19:3571571:3571655:-	0	-
#Partially deleted in new
chr19	3573902	3574161	ENSG00000064961.18|HMG20B|pc|chr19:3573902:3574161:+	0	+
#Partially deleted in new
chr19	35743010	35743904	ENSG00000161265.14|U2AF1L4|pc|chr19:35743010:35743904:-	0	-
#Deleted in new
chr19	35743154	35743205	ENSG00000161265.14|U2AF1L4|pc|chr19:35743154:35743205:-	0	-
#Deleted in new
chr19	35743154	35743208	ENSG00000161265.14|U2AF1L4|pc|chr19:35743154:35743208:-	0	-
#Deleted in new
chr19	35743154	35743345	ENSG00000161265.14|U2AF1L4|pc|chr19:35743154:35743345:-	0	-
#Deleted in new
chr19	35743295	35743345	ENSG00000161265.14|U2AF1L4|pc|chr19:35743295:35743345:-	0	-
#Partially deleted in new
chr19	35748784	35749010	ENSG00000267796.7|LIN37|pc|chr19:35748784:35749010:+	0	+
#Partially deleted in new
chr19	35752050	35752172	ENSG00000267796.7|LIN37|pc|chr19:35752050:35752172:+	0	+
#Partially deleted in new
chr19	35762252	35763028	ENSG00000167595.14|PROSER3|pc|chr19:35762252:35763028:+	0	+
#Partially deleted in new
chr19	35762255	35763045	ENSG00000167595.14|PROSER3|pc|chr19:35762255:35763045:+	0	+
#Partially deleted in new
chr19	35768403	35769188	ENSG00000167595.14|PROSER3|pc|chr19:35768403:35769188:+	0	+
#Partially deleted in new
chr19	35768403	35769864	ENSG00000167595.14|PROSER3|pc|chr19:35768403:35769864:+	0	+
#Deleted in new
chr19	35768764	35769253	ENSG00000167595.14|PROSER3|pc|chr19:35768764:35769253:+	0	+
#Deleted in new
chr19	35768764	35769335	ENSG00000167595.14|PROSER3|pc|chr19:35768764:35769335:+	0	+
#Deleted in new
chr19	35769143	35769292	ENSG00000267049.1|AC002398.1|lncRNA|chr19:35769143:35769292:-	0	-
#Partially deleted in new
chr19	3578508	3578671	ENSG00000064961.18|HMG20B|pc|chr19:3578508:3578671:+	0	+
#Deleted in new
chr19	35878517	35878544	ENSG00000105290.11|APLP1|pc|chr19:35878517:35878544:+	0	+
#Deleted in new
chr19	35879226	35879240	ENSG00000105290.11|APLP1|pc|chr19:35879226:35879240:+	0	+
#Deleted in new
chr19	35890577	35890696	ENSG00000167604.14|NFKBID|pc|chr19:35890577:35890696:-	0	-
#Partially deleted in new
chr19	35935357	35935782	ENSG00000126243.8|LRFN3|pc|chr19:35935357:35935782:+	0	+
#Partially deleted in new
chr19	3594505	3595933	ENSG00000006638.11|TBXA2R|pc|chr19:3594505:3595933:-	0	-
#Partially deleted in new
chr19	3594551	3595933	ENSG00000006638.11|TBXA2R|pc|chr19:3594551:3595933:-	0	-
#Deleted in new
chr19	3594779	3595076	ENSG00000006638.11|TBXA2R|pc|chr19:3594779:3595076:-	0	-
#Deleted in new
chr19	35960511	35960594	ENSG00000267388.1|AF038458.2|lncRNA|chr19:35960511:35960594:+	0	+
#Deleted in new
chr19	35963546	35964063	ENSG00000267388.1|AF038458.2|lncRNA|chr19:35963546:35964063:+	0	+
#Deleted in new
chr19	3597921	3598106	ENSG00000006638.11|TBXA2R|pc|chr19:3597921:3598106:-	0	-
#Deleted in new
chr19	36033295	36033343	ENSG00000105270.14|CLIP3|pc|chr19:36033295:36033343:-	0	-
#Deleted in new
chr19	36034984	36035592	ENSG00000161277.10|THAP8|pc|chr19:36034984:36035592:-	0	-
#Deleted in new
chr19	36035147	36035592	ENSG00000161277.10|THAP8|pc|chr19:36035147:36035592:-	0	-
#Deleted in new
chr19	36045708	36045972	ENSG00000267698.1|AC002116.2|lncRNA|chr19:36045708:36045972:+	0	+
#Partially deleted in new
chr19	36059967	36062649	ENSG00000075702.16|WDR62|pc|chr19:36059967:36062649:+	0	+
#Deleted in new
chr19	3606529	3606660	ENSG00000006638.11|TBXA2R|pc|chr19:3606529:3606660:-	0	-
#Deleted in new
chr19	3606529	3606840	ENSG00000006638.11|TBXA2R|pc|chr19:3606529:3606840:-	0	-
#Partially deleted in new
chr19	36070238	36071070	ENSG00000280023.1|AD000813.1|lncRNA|chr19:36070238:36071070:+	0	+
#Deleted in new
chr19	3607246	3607409	ENSG00000226800.5|CACTIN-AS1|lncRNA|chr19:3607246:3607409:+	0	+
#Deleted in new
chr19	36073648	36074304	ENSG00000075702.16|WDR62|pc|chr19:36073648:36074304:+	0	+
#Deleted in new
chr19	36075054	36075417	ENSG00000075702.16|WDR62|pc|chr19:36075054:36075417:+	0	+
#Deleted in new
chr19	3611199	3611265	ENSG00000226800.5|CACTIN-AS1|lncRNA|chr19:3611199:3611265:+	0	+
#Deleted in new
chr19	3611228	3611360	ENSG00000105298.13|CACTIN|pc|chr19:3611228:3611360:-	0	-
#Deleted in new
chr19	3611228	3611364	ENSG00000105298.13|CACTIN|pc|chr19:3611228:3611364:-	0	-
#Deleted in new
chr19	36118527	36118560	ENSG00000105254.11|TBCB|pc|chr19:36118527:36118560:+	0	+
#Deleted in new
chr19	36118527	36118664	ENSG00000105254.11|TBCB|pc|chr19:36118527:36118664:+	0	+
#Deleted in new
chr19	36121894	36122173	ENSG00000105254.11|TBCB|pc|chr19:36121894:36122173:+	0	+
#Partially deleted in new
chr19	36139574	36140157	ENSG00000126247.10|CAPNS1|pc|chr19:36139574:36140157:+	0	+
#Deleted in new
chr19	36144080	36144149	ENSG00000270760.1|AD001527.1|lncRNA|chr19:36144080:36144149:-	0	-
#Partially deleted in new
chr19	3614409	3616692	ENSG00000105298.13|CACTIN|pc|chr19:3614409:3616692:-	0	-
#Partially deleted in new
chr19	36145372	36145874	ENSG00000126247.10|CAPNS1|pc|chr19:36145372:36145874:+	0	+
#Deleted in new
chr19	36148038	36148348	ENSG00000270760.1|AD001527.1|lncRNA|chr19:36148038:36148348:-	0	-
#Deleted in new
chr19	36201976	36202050	ENSG00000196357.11|ZNF565|pc|chr19:36201976:36202050:-	0	-
#Deleted in new
chr19	36203446	36203542	ENSG00000196357.11|ZNF565|pc|chr19:36203446:36203542:-	0	-
#Partially deleted in new
chr19	3620706	3621028	ENSG00000105298.13|CACTIN|pc|chr19:3620706:3621028:-	0	-
#Deleted in new
chr19	36218121	36218195	ENSG00000167635.11|ZNF146|pc|chr19:36218121:36218195:+	0	+
#Deleted in new
chr19	36228458	36228819	ENSG00000167635.11|ZNF146|pc|chr19:36228458:36228819:+	0	+
#Deleted in new
chr19	36228747	36228819	ENSG00000167635.11|ZNF146|pc|chr19:36228747:36228819:+	0	+
#Deleted in new
chr19	36245475	36246257	ENSG00000196357.11|ZNF565|pc|chr19:36245475:36246257:-	0	-
#Partially deleted in new
chr19	3630182	3633169	ENSG00000186111.9|PIP5K1C|pc|chr19:3630182:3633169:-	0	-
#Deleted in new
chr19	36304579	36304812	ENSG00000267053.6|AC012617.1|lncRNA|chr19:36304579:36304812:+	0	+
#Deleted in new
chr19	36304620	36304812	ENSG00000267053.6|AC012617.1|lncRNA|chr19:36304620:36304812:+	0	+
#Deleted in new
chr19	36307197	36307327	ENSG00000267053.6|AC012617.1|lncRNA|chr19:36307197:36307327:+	0	+
#Deleted in new
chr19	36310357	36312661	ENSG00000267053.6|AC012617.1|lncRNA|chr19:36310357:36312661:+	0	+
#Deleted in new
chr19	36310357	36312662	ENSG00000267053.6|AC012617.1|lncRNA|chr19:36310357:36312662:+	0	+
#Deleted in new
chr19	36310994	36311388	ENSG00000267053.6|AC012617.1|lncRNA|chr19:36310994:36311388:+	0	+
#Deleted in new
chr19	36311543	36311792	ENSG00000267053.6|AC012617.1|lncRNA|chr19:36311543:36311792:+	0	+
#Deleted in new
chr19	36311622	36311792	ENSG00000267053.6|AC012617.1|lncRNA|chr19:36311622:36311792:+	0	+
#Deleted in new
chr19	36312521	36312660	ENSG00000267053.6|AC012617.1|lncRNA|chr19:36312521:36312660:+	0	+
#Deleted in new
chr19	36312521	36312668	ENSG00000267053.6|AC012617.1|lncRNA|chr19:36312521:36312668:+	0	+
#Deleted in new
chr19	36313066	36313912	ENSG00000232677.6|LINC00665|lncRNA|chr19:36313066:36313912:-	0	-
#Deleted in new
chr19	36313066	36315737	ENSG00000232677.6|LINC00665|lncRNA|chr19:36313066:36315737:-	0	-
#Deleted in new
chr19	36313076	36313322	ENSG00000232677.6|LINC00665|lncRNA|chr19:36313076:36313322:-	0	-
#Deleted in new
chr19	36315359	36315528	ENSG00000232677.6|LINC00665|lncRNA|chr19:36315359:36315528:-	0	-
#Deleted in new
chr19	36315575	36316070	ENSG00000232677.6|LINC00665|lncRNA|chr19:36315575:36316070:-	0	-
#Deleted in new
chr19	36315956	36316070	ENSG00000232677.6|LINC00665|lncRNA|chr19:36315956:36316070:-	0	-
#Deleted in new
chr19	36319715	36320760	ENSG00000232677.6|LINC00665|lncRNA|chr19:36319715:36320760:-	0	-
#Deleted in new
chr19	36319750	36320760	ENSG00000232677.6|LINC00665|lncRNA|chr19:36319750:36320760:-	0	-
#Deleted in new
chr19	36321299	36321357	ENSG00000232677.6|LINC00665|lncRNA|chr19:36321299:36321357:-	0	-
#Deleted in new
chr19	36321992	36322030	ENSG00000232677.6|LINC00665|lncRNA|chr19:36321992:36322030:-	0	-
#Deleted in new
chr19	36322129	36322225	ENSG00000232677.6|LINC00665|lncRNA|chr19:36322129:36322225:-	0	-
#Deleted in new
chr19	36322129	36322228	ENSG00000232677.6|LINC00665|lncRNA|chr19:36322129:36322228:-	0	-
#Deleted in new
chr19	36322129	36322384	ENSG00000232677.6|LINC00665|lncRNA|chr19:36322129:36322384:-	0	-
#Deleted in new
chr19	36324936	36327225	ENSG00000232677.6|LINC00665|lncRNA|chr19:36324936:36327225:-	0	-
#Deleted in new
chr19	36330252	36330447	ENSG00000232677.6|LINC00665|lncRNA|chr19:36330252:36330447:-	0	-
#Deleted in new
chr19	36330252	36330492	ENSG00000232677.6|LINC00665|lncRNA|chr19:36330252:36330492:-	0	-
#Deleted in new
chr19	36331446	36331649	ENSG00000232677.6|LINC00665|lncRNA|chr19:36331446:36331649:-	0	-
#Deleted in new
chr19	36331446	36331707	ENSG00000232677.6|LINC00665|lncRNA|chr19:36331446:36331707:-	0	-
#Deleted in new
chr19	36331446	36331708	ENSG00000232677.6|LINC00665|lncRNA|chr19:36331446:36331708:-	0	-
#Deleted in new
chr19	36331446	36331718	ENSG00000232677.6|LINC00665|lncRNA|chr19:36331446:36331718:-	0	-
#Partially deleted in new
chr19	3636600	3637613	ENSG00000186111.9|PIP5K1C|pc|chr19:3636600:3637613:-	0	-
#Partially deleted in new
chr19	3636600	3638006	ENSG00000186111.9|PIP5K1C|pc|chr19:3636600:3638006:-	0	-
#Deleted in new
chr19	36379350	36379405	ENSG00000267363.1|AC092296.3|lncRNA|chr19:36379350:36379405:-	0	-
#Deleted in new
chr19	36380718	36380912	ENSG00000267363.1|AC092296.3|lncRNA|chr19:36380718:36380912:-	0	-
#Partially deleted in new
chr19	36383119	36384435	ENSG00000181007.8|ZFP82|pc|chr19:36383119:36384435:-	0	-
#Deleted in new
chr19	36445118	36446115	ENSG00000186017.14|ZNF566|pc|chr19:36445118:36446115:-	0	-
#Deleted in new
chr19	36456459	36456549	ENSG00000186017.14|ZNF566|pc|chr19:36456459:36456549:-	0	-
#Deleted in new
chr1	93646476	93646574	ENSG00000137936.16|BCAR3|pc|chr1:93646476:93646574:-	0	-
#Deleted in new
chr19	36476108	36476616	ENSG00000186017.14|ZNF566|pc|chr19:36476108:36476616:-	0	-
#Deleted in new
chr19	36476548	36476616	ENSG00000186017.14|ZNF566|pc|chr19:36476548:36476616:-	0	-
#Deleted in new
chr19	36489412	36489435	ENSG00000186017.14|ZNF566|pc|chr19:36489412:36489435:-	0	-
#Deleted in new
chr19	36489473	36489506	ENSG00000186017.14|ZNF566|pc|chr19:36489473:36489506:-	0	-
#Deleted in new
chr19	36489473	36489561	ENSG00000186017.14|ZNF566|pc|chr19:36489473:36489561:-	0	-
#Deleted in new
chr19	36489473	36489902	ENSG00000186017.14|ZNF566|pc|chr19:36489473:36489902:-	0	-
#Deleted in new
chr19	36489485	36489518	ENSG00000186017.14|ZNF566|pc|chr19:36489485:36489518:-	0	-
#Deleted in new
chr19	36489485	36489519	ENSG00000186017.14|ZNF566|pc|chr19:36489485:36489519:-	0	-
#Deleted in new
chr19	36489485	36489537	ENSG00000186017.14|ZNF566|pc|chr19:36489485:36489537:-	0	-
#Deleted in new
chr19	36489485	36489861	ENSG00000186017.14|ZNF566|pc|chr19:36489485:36489861:-	0	-
#Deleted in new
chr19	36489485	36489902	ENSG00000186017.14|ZNF566|pc|chr19:36489485:36489902:-	0	-
#Deleted in new
chr19	36489648	36491040	ENSG00000267309.1|AC092295.2|lncRNA|chr19:36489648:36491040:+	0	+
#Deleted in new
chr19	3649354	3649429	ENSG00000186111.9|PIP5K1C|pc|chr19:3649354:3649429:-	0	-
#Deleted in new
chr19	36517285	36517393	ENSG00000254004.6|ZNF260|pc|chr19:36517285:36517393:-	0	-
#Deleted in new
chr19	36518029	36518143	ENSG00000254004.6|ZNF260|pc|chr19:36518029:36518143:-	0	-
#Deleted in new
chr19	36534773	36534961	ENSG00000186020.12|ZNF529|pc|chr19:36534773:36534961:-	0	-
#Deleted in new
chr19	36534860	36534992	ENSG00000228629.2|AC092295.1|lncRNA|chr19:36534860:36534992:+	0	+
#Deleted in new
chr19	36535097	36535235	ENSG00000228629.2|AC092295.1|lncRNA|chr19:36535097:36535235:+	0	+
#Deleted in new
chr19	36543612	36543828	ENSG00000186020.12|ZNF529|pc|chr19:36543612:36543828:-	0	-
#Split in new
chr19	36543615	36548322	ENSG00000186020.12|ZNF529|pc|chr19:36543615:36548322:-	0	-
#Deleted in new
chr19	36545869	36545933	ENSG00000186020.12|ZNF529|pc|chr19:36545869:36545933:-	0	-
#Deleted in new
chr19	36551876	36551977	ENSG00000186020.12|ZNF529|pc|chr19:36551876:36551977:-	0	-
#Deleted in new
chr19	36556103	36556197	ENSG00000186020.12|ZNF529|pc|chr19:36556103:36556197:-	0	-
#Deleted in new
chr19	36572332	36572392	ENSG00000186020.12|ZNF529|pc|chr19:36572332:36572392:-	0	-
#Deleted in new
chr19	36573069	36573525	ENSG00000233527.8|ZNF529-AS1|lncRNA|chr19:36573069:36573525:+	0	+
#Deleted in new
chr19	36573139	36573252	ENSG00000186020.12|ZNF529|pc|chr19:36573139:36573252:-	0	-
#Deleted in new
chr19	36573139	36573288	ENSG00000186020.12|ZNF529|pc|chr19:36573139:36573288:-	0	-
#Deleted in new
chr19	36573376	36573525	ENSG00000233527.8|ZNF529-AS1|lncRNA|chr19:36573376:36573525:+	0	+
#Deleted in new
chr19	36573536	36573555	ENSG00000233527.8|ZNF529-AS1|lncRNA|chr19:36573536:36573555:+	0	+
#Deleted in new
chr19	36574820	36574900	ENSG00000233527.8|ZNF529-AS1|lncRNA|chr19:36574820:36574900:+	0	+
#Deleted in new
chr19	36577140	36577915	ENSG00000233527.8|ZNF529-AS1|lncRNA|chr19:36577140:36577915:+	0	+
#Deleted in new
chr19	36577227	36577283	ENSG00000233527.8|ZNF529-AS1|lncRNA|chr19:36577227:36577283:+	0	+
#Deleted in new
chr19	36580254	36582704	ENSG00000186020.12|ZNF529|pc|chr19:36580254:36582704:-	0	-
#Deleted in new
chr19	36582397	36582704	ENSG00000186020.12|ZNF529|pc|chr19:36582397:36582704:-	0	-
#Deleted in new
chr19	36587401	36587457	ENSG00000186020.12|ZNF529|pc|chr19:36587401:36587457:-	0	-
#Deleted in new
chr19	36589614	36589701	ENSG00000186020.12|ZNF529|pc|chr19:36589614:36589701:-	0	-
#Deleted in new
chr19	36593845	36593931	ENSG00000233527.8|ZNF529-AS1|lncRNA|chr19:36593845:36593931:+	0	+
#Deleted in new
chr19	36594155	36594299	ENSG00000233527.8|ZNF529-AS1|lncRNA|chr19:36594155:36594299:+	0	+
#Deleted in new
chr19	36594400	36594708	ENSG00000233527.8|ZNF529-AS1|lncRNA|chr19:36594400:36594708:+	0	+
#Deleted in new
chr19	36594441	36594708	ENSG00000233527.8|ZNF529-AS1|lncRNA|chr19:36594441:36594708:+	0	+
#Partially deleted in new
chr19	36628765	36628842	ENSG00000161298.17|ZNF382|pc|chr19:36628765:36628842:+	0	+
#Deleted in new
chr19	36628792	36629006	ENSG00000161298.17|ZNF382|pc|chr19:36628792:36629006:+	0	+
#Deleted in new
chr19	36629854	36630190	ENSG00000161298.17|ZNF382|pc|chr19:36629854:36630190:+	0	+
#Deleted in new
chr19	36637224	36637316	ENSG00000197808.11|ZNF461|pc|chr19:36637224:36637316:-	0	-
#Deleted in new
chr19	36637619	36637767	ENSG00000197808.11|ZNF461|pc|chr19:36637619:36637767:-	0	-
#Deleted in new
chr19	36637819	36637839	ENSG00000197808.11|ZNF461|pc|chr19:36637819:36637839:-	0	-
#Deleted in new
chr19	36643273	36643607	ENSG00000197808.11|ZNF461|pc|chr19:36643273:36643607:-	0	-
#Deleted in new
chr19	36643793	36643862	ENSG00000197808.11|ZNF461|pc|chr19:36643793:36643862:-	0	-
#Deleted in new
chr19	36643821	36643862	ENSG00000197808.11|ZNF461|pc|chr19:36643821:36643862:-	0	-
#Deleted in new
chr19	36645151	36645220	ENSG00000197808.11|ZNF461|pc|chr19:36645151:36645220:-	0	-
#Deleted in new
chr19	36657652	36657750	ENSG00000197808.11|ZNF461|pc|chr19:36657652:36657750:-	0	-
#Deleted in new
chr19	36658554	36658563	ENSG00000197808.11|ZNF461|pc|chr19:36658554:36658563:-	0	-
#Deleted in new
chr19	36664697	36664786	ENSG00000197808.11|ZNF461|pc|chr19:36664697:36664786:-	0	-
#Deleted in new
chr19	36666689	36666819	ENSG00000197808.11|ZNF461|pc|chr19:36666689:36666819:-	0	-
#Deleted in new
chr19	36666689	36666823	ENSG00000197808.11|ZNF461|pc|chr19:36666689:36666823:-	0	-
#Deleted in new
chr19	36666689	36666828	ENSG00000197808.11|ZNF461|pc|chr19:36666689:36666828:-	0	-
#Deleted in new
chr19	36666689	36666837	ENSG00000197808.11|ZNF461|pc|chr19:36666689:36666837:-	0	-
#Deleted in new
chr19	36666689	36666838	ENSG00000197808.11|ZNF461|pc|chr19:36666689:36666838:-	0	-
#Deleted in new
chr19	36666689	36666841	ENSG00000197808.11|ZNF461|pc|chr19:36666689:36666841:-	0	-
#Deleted in new
chr19	36666689	36666853	ENSG00000197808.11|ZNF461|pc|chr19:36666689:36666853:-	0	-
#Deleted in new
chr19	36668101	36669404	ENSG00000276071.1|AC074138.1|lncRNA|chr19:36668101:36669404:+	0	+
#Deleted in new
chr19	3668403	3668440	ENSG00000186111.9|PIP5K1C|pc|chr19:3668403:3668440:-	0	-
#Deleted in new
chr19	36685439	36685511	ENSG00000225975.6|LINC01534|lncRNA|chr19:36685439:36685511:-	0	-
#Deleted in new
chr19	36685464	36686015	ENSG00000225975.6|LINC01534|lncRNA|chr19:36685464:36686015:-	0	-
#Deleted in new
chr19	36685836	36686015	ENSG00000225975.6|LINC01534|lncRNA|chr19:36685836:36686015:-	0	-
#Partially deleted in new
chr19	36686426	36686806	ENSG00000225975.6|LINC01534|lncRNA|chr19:36686426:36686806:-	0	-
#Partially deleted in new
chr19	36686685	36686806	ENSG00000225975.6|LINC01534|lncRNA|chr19:36686685:36686806:-	0	-
#Deleted in new
chr19	3669672	3669904	ENSG00000186111.9|PIP5K1C|pc|chr19:3669672:3669904:-	0	-
#Deleted in new
chr19	36703680	36703736	ENSG00000189042.13|ZNF567|pc|chr19:36703680:36703736:+	0	+
#Split in new
chr19	36711239	36712512	ENSG00000189042.13|ZNF567|pc|chr19:36711239:36712512:+	0	+
#Deleted in new
chr19	36714382	36714500	ENSG00000267041.5|ZNF850|pc|chr19:36714382:36714500:-	0	-
#Deleted in new
chr19	36723188	36723252	ENSG00000189042.13|ZNF567|pc|chr19:36723188:36723252:+	0	+
#Deleted in new
chr19	36723188	36723346	ENSG00000189042.13|ZNF567|pc|chr19:36723188:36723346:+	0	+
#Deleted in new
chr19	36723188	36723347	ENSG00000189042.13|ZNF567|pc|chr19:36723188:36723347:+	0	+
#Deleted in new
chr19	3672581	3672614	ENSG00000267304.1|AC004637.1|lncRNA|chr19:3672581:3672614:+	0	+
#Deleted in new
chr19	36727092	36727214	ENSG00000189042.13|ZNF567|pc|chr19:36727092:36727214:+	0	+
#Deleted in new
chr19	36727522	36727701	ENSG00000189042.13|ZNF567|pc|chr19:36727522:36727701:+	0	+
#Deleted in new
chr19	3673739	3673896	ENSG00000267304.1|AC004637.1|lncRNA|chr19:3673739:3673896:+	0	+
#Deleted in new
chr19	3674003	3674295	ENSG00000267304.1|AC004637.1|lncRNA|chr19:3674003:3674295:+	0	+
#Deleted in new
chr19	36762594	36762675	ENSG00000267041.5|ZNF850|pc|chr19:36762594:36762675:-	0	-
#Deleted in new
chr19	36772724	36772814	ENSG00000267041.5|ZNF850|pc|chr19:36772724:36772814:-	0	-
#Deleted in new
chr19	36772724	36772825	ENSG00000267041.5|ZNF850|pc|chr19:36772724:36772825:-	0	-
#Deleted in new
chr19	36773152	36773309	ENSG00000267260.1|AC020928.1|lncRNA|chr19:36773152:36773309:+	0	+
#Deleted in new
chr19	36773189	36773509	ENSG00000267260.1|AC020928.1|lncRNA|chr19:36773189:36773509:+	0	+
#Deleted in new
chr19	36797517	36797811	ENSG00000267254.5|ZNF790-AS1|lncRNA|chr19:36797517:36797811:+	0	+
#Deleted in new
chr19	36797524	36797811	ENSG00000267254.5|ZNF790-AS1|lncRNA|chr19:36797524:36797811:+	0	+
#Deleted in new
chr19	36797562	36797811	ENSG00000267254.5|ZNF790-AS1|lncRNA|chr19:36797562:36797811:+	0	+
#Deleted in new
chr19	36801202	36801240	ENSG00000267254.5|ZNF790-AS1|lncRNA|chr19:36801202:36801240:+	0	+
#Deleted in new
chr19	36801208	36801240	ENSG00000267254.5|ZNF790-AS1|lncRNA|chr19:36801208:36801240:+	0	+
#Deleted in new
chr19	36801875	36801933	ENSG00000267254.5|ZNF790-AS1|lncRNA|chr19:36801875:36801933:+	0	+
#Deleted in new
chr19	36801875	36802200	ENSG00000267254.5|ZNF790-AS1|lncRNA|chr19:36801875:36802200:+	0	+
#Deleted in new
chr19	36802457	36802652	ENSG00000267254.5|ZNF790-AS1|lncRNA|chr19:36802457:36802652:+	0	+
#Deleted in new
chr19	36812509	36812606	ENSG00000267254.5|ZNF790-AS1|lncRNA|chr19:36812509:36812606:+	0	+
#Deleted in new
chr19	36837671	36838027	ENSG00000197863.8|ZNF790|pc|chr19:36837671:36838027:-	0	-
#Deleted in new
chr19	36838037	36838095	ENSG00000197863.8|ZNF790|pc|chr19:36838037:36838095:-	0	-
#Deleted in new
chr19	36838336	36838384	ENSG00000197863.8|ZNF790|pc|chr19:36838336:36838384:-	0	-
#Partially deleted in new
chr19	36850360	36850515	ENSG00000251247.10|ZNF345|pc|chr19:36850360:36850515:+	0	+
#Deleted in new
chr19	36850699	36850787	ENSG00000197863.8|ZNF790|pc|chr19:36850699:36850787:-	0	-
#Deleted in new
chr19	36850875	36850968	ENSG00000251247.10|ZNF345|pc|chr19:36850875:36850968:+	0	+
#Deleted in new
chr19	36850877	36850968	ENSG00000251247.10|ZNF345|pc|chr19:36850877:36850968:+	0	+
#Deleted in new
chr19	36850889	36850968	ENSG00000251247.10|ZNF345|pc|chr19:36850889:36850968:+	0	+
#Deleted in new
chr19	36850894	36850968	ENSG00000251247.10|ZNF345|pc|chr19:36850894:36850968:+	0	+
#Deleted in new
chr19	36850929	36850968	ENSG00000251247.10|ZNF345|pc|chr19:36850929:36850968:+	0	+
#Deleted in new
chr19	36851162	36851904	ENSG00000251247.10|ZNF345|pc|chr19:36851162:36851904:+	0	+
#Deleted in new
chr19	36851650	36851723	ENSG00000251247.10|ZNF345|pc|chr19:36851650:36851723:+	0	+
#Deleted in new
chr19	36851654	36851723	ENSG00000251247.10|ZNF345|pc|chr19:36851654:36851723:+	0	+
#Deleted in new
chr19	36851658	36851723	ENSG00000251247.10|ZNF345|pc|chr19:36851658:36851723:+	0	+
#Deleted in new
chr19	36851727	36851904	ENSG00000251247.10|ZNF345|pc|chr19:36851727:36851904:+	0	+
#Deleted in new
chr19	36851744	36851904	ENSG00000251247.10|ZNF345|pc|chr19:36851744:36851904:+	0	+
#Deleted in new
chr19	36851829	36851904	ENSG00000251247.10|ZNF345|pc|chr19:36851829:36851904:+	0	+
#Deleted in new
chr19	36851851	36851904	ENSG00000251247.10|ZNF345|pc|chr19:36851851:36851904:+	0	+
#Deleted in new
chr19	36854449	36854594	ENSG00000251247.10|ZNF345|pc|chr19:36854449:36854594:+	0	+
#Deleted in new
chr19	36862916	36863011	ENSG00000251247.10|ZNF345|pc|chr19:36862916:36863011:+	0	+
#Deleted in new
chr19	36872550	36872748	ENSG00000251247.10|ZNF345|pc|chr19:36872550:36872748:+	0	+
#Deleted in new
chr19	36872697	36872748	ENSG00000251247.10|ZNF345|pc|chr19:36872697:36872748:+	0	+
#Duplicated in new
chr19	36876784	36877384	ENSG00000251247.10|ZNF345|pc|chr19:36876784:36877384:+	0	+
#Partially deleted in new
chr19	36888123	36892471	ENSG00000185869.14|ZNF829|pc|chr19:36888123:36892471:-	0	-
#Partially deleted in new
chr19	36905433	36908024	ENSG00000185869.14|ZNF829|pc|chr19:36905433:36908024:-	0	-
#Deleted in new
chr19	36912726	36913029	ENSG00000251247.10|ZNF345|pc|chr19:36912726:36913029:+	0	+
#Deleted in new
chr19	36915795	36916021	ENSG00000185869.14|ZNF829|pc|chr19:36915795:36916021:-	0	-
#Deleted in new
chr19	36931552	36931645	ENSG00000198453.12|ZNF568|pc|chr19:36931552:36931645:+	0	+
#Partially deleted in new
chr19	36950463	36952741	ENSG00000198453.12|ZNF568|pc|chr19:36950463:36952741:+	0	+
#Deleted in new
chr19	36973212	36973753	ENSG00000198453.12|ZNF568|pc|chr19:36973212:36973753:+	0	+
#Deleted in new
chr19	36973214	36973753	ENSG00000198453.12|ZNF568|pc|chr19:36973214:36973753:+	0	+
#Deleted in new
chr19	36973217	36973410	ENSG00000198453.12|ZNF568|pc|chr19:36973217:36973410:+	0	+
#Deleted in new
chr19	36973537	36973753	ENSG00000198453.12|ZNF568|pc|chr19:36973537:36973753:+	0	+
#Deleted in new
chr19	36973560	36973753	ENSG00000198453.12|ZNF568|pc|chr19:36973560:36973753:+	0	+
#Deleted in new
chr19	36974419	36974466	ENSG00000198453.12|ZNF568|pc|chr19:36974419:36974466:+	0	+
#Deleted in new
chr19	36976326	36976367	ENSG00000198453.12|ZNF568|pc|chr19:36976326:36976367:+	0	+
#Deleted in new
chr19	36979003	36979907	ENSG00000198453.12|ZNF568|pc|chr19:36979003:36979907:+	0	+
#Deleted in new
chr19	36979003	36980317	ENSG00000198453.12|ZNF568|pc|chr19:36979003:36980317:+	0	+
#Deleted in new
chr19	37007856	37008082	ENSG00000197050.10|ZNF420|pc|chr19:37007856:37008082:+	0	+
#Deleted in new
chr19	37007858	37008082	ENSG00000197050.10|ZNF420|pc|chr19:37007858:37008082:+	0	+
#Deleted in new
chr19	37091340	37092564	ENSG00000267672.1|AC010632.2|lncRNA|chr19:37091340:37092564:+	0	+
#Deleted in new
chr19	37093018	37093152	ENSG00000267360.6|AC012309.1|pc|chr19:37093018:37093152:-	0	-
#Deleted in new
chr19	37096030	37096115	ENSG00000197050.10|ZNF420|pc|chr19:37096030:37096115:+	0	+
#Deleted in new
chr19	37106733	37107695	ENSG00000196967.10|ZNF585A|pc|chr19:37106733:37107695:-	0	-
#Deleted in new
chr19	37108286	37108385	ENSG00000196967.10|ZNF585A|pc|chr19:37108286:37108385:-	0	-
#Deleted in new
chr19	37109389	37109855	ENSG00000196967.10|ZNF585A|pc|chr19:37109389:37109855:-	0	-
#Deleted in new
chr19	37111515	37111593	ENSG00000196967.10|ZNF585A|pc|chr19:37111515:37111593:-	0	-
#Deleted in new
chr19	37111599	37111687	ENSG00000197050.10|ZNF420|pc|chr19:37111599:37111687:+	0	+
#Deleted in new
chr19	37111599	37111711	ENSG00000197050.10|ZNF420|pc|chr19:37111599:37111711:+	0	+
#Deleted in new
chr19	37114997	37115165	ENSG00000196967.10|ZNF585A|pc|chr19:37114997:37115165:-	0	-
#Deleted in new
chr19	37115035	37115165	ENSG00000196967.10|ZNF585A|pc|chr19:37115035:37115165:-	0	-
#Deleted in new
chr19	37133746	37133864	ENSG00000267437.1|AC012309.2|lncRNA|chr19:37133746:37133864:-	0	-
#Deleted in new
chr19	37141593	37141640	ENSG00000267437.1|AC012309.2|lncRNA|chr19:37141593:37141640:-	0	-
#Deleted in new
chr19	37165382	37165696	ENSG00000267360.6|AC012309.1|pc|chr19:37165382:37165696:-	0	-
#Deleted in new
chr19	37165384	37165696	ENSG00000196967.10|ZNF585A|pc|chr19:37165384:37165696:-	0	-
#Deleted in new
chr19	37165594	37165696	ENSG00000196967.10|ZNF585A|pc|chr19:37165594:37165696:-	0	-
#Deleted in new
chr19	37195880	37196019	ENSG00000245680.9|ZNF585B|pc|chr19:37195880:37196019:-	0	-
#Deleted in new
chr19	37195880	37196027	ENSG00000267360.6|AC012309.1|pc|chr19:37195880:37196027:-	0	-
#Deleted in new
chr19	37198938	37199008	ENSG00000245680.9|ZNF585B|pc|chr19:37198938:37199008:-	0	-
#Deleted in new
chr19	37198938	37199054	ENSG00000245680.9|ZNF585B|pc|chr19:37198938:37199054:-	0	-
#Deleted in new
chr19	37198938	37199054	ENSG00000267360.6|AC012309.1|pc|chr19:37198938:37199054:-	0	-
#Deleted in new
chr19	37199399	37199497	ENSG00000245680.9|ZNF585B|pc|chr19:37199399:37199497:-	0	-
#Deleted in new
chr1	93720188	93720294	ENSG00000137936.16|BCAR3|pc|chr1:93720188:93720294:-	0	-
#Partially deleted in new
chr19	37219275	37219490	ENSG00000188283.11|ZNF383|pc|chr19:37219275:37219490:+	0	+
#Deleted in new
chr19	37219598	37219749	ENSG00000188283.11|ZNF383|pc|chr19:37219598:37219749:+	0	+
#Deleted in new
chr19	37224817	37224879	ENSG00000188283.11|ZNF383|pc|chr19:37224817:37224879:+	0	+
#Deleted in new
chr19	37224817	37224939	ENSG00000188283.11|ZNF383|pc|chr19:37224817:37224939:+	0	+
#Deleted in new
chr19	37224817	37225212	ENSG00000188283.11|ZNF383|pc|chr19:37224817:37225212:+	0	+
#Deleted in new
chr19	37226463	37226676	ENSG00000188283.11|ZNF383|pc|chr19:37226463:37226676:+	0	+
#Deleted in new
chr19	37227549	37227743	ENSG00000188283.11|ZNF383|pc|chr19:37227549:37227743:+	0	+
#Deleted in new
chr19	37251911	37252182	ENSG00000226686.7|LINC01535|lncRNA|chr19:37251911:37252182:+	0	+
#Deleted in new
chr19	37251921	37252182	ENSG00000226686.7|LINC01535|lncRNA|chr19:37251921:37252182:+	0	+
#Deleted in new
chr19	37251925	37252182	ENSG00000226686.7|LINC01535|lncRNA|chr19:37251925:37252182:+	0	+
#Deleted in new
chr19	37255898	37255982	ENSG00000226686.7|LINC01535|lncRNA|chr19:37255898:37255982:+	0	+
#Deleted in new
chr19	37255915	37255982	ENSG00000226686.7|LINC01535|lncRNA|chr19:37255915:37255982:+	0	+
#Deleted in new
chr19	37256398	37256519	ENSG00000226686.7|LINC01535|lncRNA|chr19:37256398:37256519:+	0	+
#Deleted in new
chr19	37256726	37256814	ENSG00000226686.7|LINC01535|lncRNA|chr19:37256726:37256814:+	0	+
#Deleted in new
chr19	37257011	37257394	ENSG00000226686.7|LINC01535|lncRNA|chr19:37257011:37257394:+	0	+
#Deleted in new
chr19	37257230	37257394	ENSG00000226686.7|LINC01535|lncRNA|chr19:37257230:37257394:+	0	+
#Deleted in new
chr19	37258947	37259069	ENSG00000226686.7|LINC01535|lncRNA|chr19:37258947:37259069:+	0	+
#Deleted in new
chr19	37262354	37262434	ENSG00000226686.7|LINC01535|lncRNA|chr19:37262354:37262434:+	0	+
#Deleted in new
chr19	37262541	37262655	ENSG00000226686.7|LINC01535|lncRNA|chr19:37262541:37262655:+	0	+
#Deleted in new
chr19	37263083	37263613	ENSG00000226686.7|LINC01535|lncRNA|chr19:37263083:37263613:+	0	+
#Deleted in new
chr19	37263678	37263762	ENSG00000226686.7|LINC01535|lncRNA|chr19:37263678:37263762:+	0	+
#Deleted in new
chr19	37264695	37264755	ENSG00000226686.7|LINC01535|lncRNA|chr19:37264695:37264755:+	0	+
#Deleted in new
chr19	37265285	37265473	ENSG00000226686.7|LINC01535|lncRNA|chr19:37265285:37265473:+	0	+
#Deleted in new
chr19	37265285	37265475	ENSG00000226686.7|LINC01535|lncRNA|chr19:37265285:37265475:+	0	+
#Deleted in new
chr19	37265285	37265531	ENSG00000226686.7|LINC01535|lncRNA|chr19:37265285:37265531:+	0	+
#Deleted in new
chr19	37265285	37265535	ENSG00000226686.7|LINC01535|lncRNA|chr19:37265285:37265535:+	0	+
#Deleted in new
chr19	37265938	37266085	ENSG00000267605.5|AC016590.1|lncRNA|chr19:37265938:37266085:-	0	-
#Deleted in new
chr19	37265940	37266085	ENSG00000267605.5|AC016590.1|lncRNA|chr19:37265940:37266085:-	0	-
#Deleted in new
chr19	37265945	37268248	ENSG00000267605.5|AC016590.1|lncRNA|chr19:37265945:37268248:-	0	-
#Deleted in new
chr19	37265946	37266085	ENSG00000267605.5|AC016590.1|lncRNA|chr19:37265946:37266085:-	0	-
#Deleted in new
chr19	37266069	37266085	ENSG00000267605.5|AC016590.1|lncRNA|chr19:37266069:37266085:-	0	-
#Deleted in new
chr19	37266813	37266983	ENSG00000267605.5|AC016590.1|lncRNA|chr19:37266813:37266983:-	0	-
#Deleted in new
chr19	37266813	37267193	ENSG00000267605.5|AC016590.1|lncRNA|chr19:37266813:37267193:-	0	-
#Deleted in new
chr19	37267217	37267611	ENSG00000267605.5|AC016590.1|lncRNA|chr19:37267217:37267611:-	0	-
#Deleted in new
chr19	37268746	37268984	ENSG00000267605.5|AC016590.1|lncRNA|chr19:37268746:37268984:-	0	-
#Deleted in new
chr19	37271285	37271388	ENSG00000267605.5|AC016590.1|lncRNA|chr19:37271285:37271388:-	0	-
#Deleted in new
chr19	37271285	37271518	ENSG00000267605.5|AC016590.1|lncRNA|chr19:37271285:37271518:-	0	-
#Deleted in new
chr19	37312836	37313312	ENSG00000181666.17|HKR1|pc|chr19:37312836:37313312:+	0	+
#Deleted in new
chr19	37312877	37313312	ENSG00000181666.17|HKR1|pc|chr19:37312877:37313312:+	0	+
#Deleted in new
chr19	37314867	37315620	ENSG00000276846.1|AC016590.3|lncRNA|chr19:37314867:37315620:-	0	-
#Deleted in new
chr19	37316994	37317142	ENSG00000181666.17|HKR1|pc|chr19:37316994:37317142:+	0	+
#Deleted in new
chr19	37317899	37318186	ENSG00000181666.17|HKR1|pc|chr19:37317899:37318186:+	0	+
#Deleted in new
chr19	37317903	37318186	ENSG00000181666.17|HKR1|pc|chr19:37317903:37318186:+	0	+
#Deleted in new
chr19	37317910	37318186	ENSG00000181666.17|HKR1|pc|chr19:37317910:37318186:+	0	+
#Deleted in new
chr19	37317916	37318186	ENSG00000181666.17|HKR1|pc|chr19:37317916:37318186:+	0	+
#Deleted in new
chr19	37317918	37318186	ENSG00000181666.17|HKR1|pc|chr19:37317918:37318186:+	0	+
#Deleted in new
chr19	37318038	37318186	ENSG00000181666.17|HKR1|pc|chr19:37318038:37318186:+	0	+
#Deleted in new
chr19	37322184	37322232	ENSG00000181666.17|HKR1|pc|chr19:37322184:37322232:+	0	+
#Deleted in new
chr19	37323532	37323570	ENSG00000181666.17|HKR1|pc|chr19:37323532:37323570:+	0	+
#Deleted in new
chr19	37324207	37324265	ENSG00000181666.17|HKR1|pc|chr19:37324207:37324265:+	0	+
#Deleted in new
chr19	37324795	37324936	ENSG00000181666.17|HKR1|pc|chr19:37324795:37324936:+	0	+
#Deleted in new
chr19	37324795	37325047	ENSG00000181666.17|HKR1|pc|chr19:37324795:37325047:+	0	+
#Deleted in new
chr19	37328578	37329105	ENSG00000181666.17|HKR1|pc|chr19:37328578:37329105:+	0	+
#Deleted in new
chr19	37334623	37334782	ENSG00000181666.17|HKR1|pc|chr19:37334623:37334782:+	0	+
#Deleted in new
chr19	37334639	37334782	ENSG00000181666.17|HKR1|pc|chr19:37334639:37334782:+	0	+
#Deleted in new
chr19	37334655	37334782	ENSG00000181666.17|HKR1|pc|chr19:37334655:37334782:+	0	+
#Deleted in new
chr19	37334656	37334782	ENSG00000181666.17|HKR1|pc|chr19:37334656:37334782:+	0	+
#Deleted in new
chr19	37334657	37334782	ENSG00000181666.17|HKR1|pc|chr19:37334657:37334782:+	0	+
#Deleted in new
chr19	37334665	37334782	ENSG00000181666.17|HKR1|pc|chr19:37334665:37334782:+	0	+
#Deleted in new
chr19	37334670	37334782	ENSG00000181666.17|HKR1|pc|chr19:37334670:37334782:+	0	+
#Deleted in new
chr19	37334677	37334782	ENSG00000181666.17|HKR1|pc|chr19:37334677:37334782:+	0	+
#Deleted in new
chr19	37334711	37334782	ENSG00000181666.17|HKR1|pc|chr19:37334711:37334782:+	0	+
#Deleted in new
chr19	37334727	37335257	ENSG00000181666.17|HKR1|pc|chr19:37334727:37335257:+	0	+
#Deleted in new
chr19	37335168	37335257	ENSG00000181666.17|HKR1|pc|chr19:37335168:37335257:+	0	+
#Deleted in new
chr19	37335199	37335257	ENSG00000181666.17|HKR1|pc|chr19:37335199:37335257:+	0	+
#Deleted in new
chr19	37337235	37337587	ENSG00000267682.1|AC016590.2|lncRNA|chr19:37337235:37337587:+	0	+
#Deleted in new
chr19	37337720	37337743	ENSG00000267682.1|AC016590.2|lncRNA|chr19:37337720:37337743:+	0	+
#Deleted in new
chr19	37344609	37344774	ENSG00000181666.17|HKR1|pc|chr19:37344609:37344774:+	0	+
#Deleted in new
chr19	37344609	37344797	ENSG00000181666.17|HKR1|pc|chr19:37344609:37344797:+	0	+
#Deleted in new
chr19	37344933	37345021	ENSG00000181666.17|HKR1|pc|chr19:37344933:37345021:+	0	+
#Deleted in new
chr19	37346296	37346492	ENSG00000181666.17|HKR1|pc|chr19:37346296:37346492:+	0	+
#Deleted in new
chr19	37346355	37346492	ENSG00000181666.17|HKR1|pc|chr19:37346355:37346492:+	0	+
#Deleted in new
chr19	37346422	37346492	ENSG00000181666.17|HKR1|pc|chr19:37346422:37346492:+	0	+
#Deleted in new
chr19	37346422	37346675	ENSG00000181666.17|HKR1|pc|chr19:37346422:37346675:+	0	+
#Deleted in new
chr19	37357961	37358039	ENSG00000181666.17|HKR1|pc|chr19:37357961:37358039:+	0	+
#Deleted in new
chr19	37358540	37358661	ENSG00000181666.17|HKR1|pc|chr19:37358540:37358661:+	0	+
#Deleted in new
chr19	37359425	37359546	ENSG00000181666.17|HKR1|pc|chr19:37359425:37359546:+	0	+
#Deleted in new
chr19	37359425	37359776	ENSG00000181666.17|HKR1|pc|chr19:37359425:37359776:+	0	+
#Deleted in new
chr19	37369178	37369365	ENSG00000181666.17|HKR1|pc|chr19:37369178:37369365:+	0	+
#Deleted in new
chr19	37371060	37371226	ENSG00000189164.14|ZNF527|pc|chr19:37371060:37371226:+	0	+
#Deleted in new
chr19	37371158	37371226	ENSG00000189164.14|ZNF527|pc|chr19:37371158:37371226:+	0	+
#Deleted in new
chr19	37371160	37371226	ENSG00000189164.14|ZNF527|pc|chr19:37371160:37371226:+	0	+
#Deleted in new
chr19	37371176	37371226	ENSG00000189164.14|ZNF527|pc|chr19:37371176:37371226:+	0	+
#Deleted in new
chr19	37371180	37371226	ENSG00000189164.14|ZNF527|pc|chr19:37371180:37371226:+	0	+
#Deleted in new
chr19	37371193	37371226	ENSG00000189164.14|ZNF527|pc|chr19:37371193:37371226:+	0	+
#Duplicated in new
chr19	37380047	37380372	ENSG00000189164.14|ZNF527|pc|chr19:37380047:37380372:+	0	+
#Deleted in new
chr19	37384867	37384981	ENSG00000189164.14|ZNF527|pc|chr19:37384867:37384981:+	0	+
#Deleted in new
chr19	37384867	37385644	ENSG00000189164.14|ZNF527|pc|chr19:37384867:37385644:+	0	+
#Deleted in new
chr19	37385304	37385379	ENSG00000189164.14|ZNF527|pc|chr19:37385304:37385379:+	0	+
#Split in new
chr19	37388305	37393066	ENSG00000189164.14|ZNF527|pc|chr19:37388305:37393066:+	0	+
#Deleted in new
chr19	37392414	37392894	ENSG00000189164.14|ZNF527|pc|chr19:37392414:37392894:+	0	+
#Deleted in new
chr19	37401403	37403846	ENSG00000279936.1|AC008806.1|lncRNA|chr19:37401403:37403846:-	0	-
#Deleted in new
chr19	37431558	37431647	ENSG00000196437.10|ZNF569|pc|chr19:37431558:37431647:-	0	-
#Deleted in new
chr19	37454833	37455073	ENSG00000196437.10|ZNF569|pc|chr19:37454833:37455073:-	0	-
#Deleted in new
chr19	37454833	37455075	ENSG00000196437.10|ZNF569|pc|chr19:37454833:37455075:-	0	-
#Partially deleted in new
chr19	37468980	37469270	ENSG00000196437.10|ZNF569|pc|chr19:37468980:37469270:-	0	-
#Partially deleted in new
chr19	37468980	37469275	ENSG00000196437.10|ZNF569|pc|chr19:37468980:37469275:-	0	-
#Partially deleted in new
chr19	37469570	37469655	ENSG00000171827.10|ZNF570|pc|chr19:37469570:37469655:+	0	+
#Deleted in new
chr19	3749613	3749674	ENSG00000105289.14|TJP3|pc|chr19:3749613:3749674:+	0	+
#Deleted in new
chr19	37497158	37497592	ENSG00000266916.5|ZNF793-AS1|lncRNA|chr19:37497158:37497592:-	0	-
#Deleted in new
chr19	37497163	37497592	ENSG00000266916.5|ZNF793-AS1|lncRNA|chr19:37497163:37497592:-	0	-
#Deleted in new
chr19	37497356	37497592	ENSG00000266916.5|ZNF793-AS1|lncRNA|chr19:37497356:37497592:-	0	-
#Deleted in new
chr19	37497362	37497592	ENSG00000266916.5|ZNF793-AS1|lncRNA|chr19:37497362:37497592:-	0	-
#Deleted in new
chr19	37498023	37498175	ENSG00000266916.5|ZNF793-AS1|lncRNA|chr19:37498023:37498175:-	0	-
#Deleted in new
chr19	37503905	37504465	ENSG00000267115.1|AC022148.2|lncRNA|chr19:37503905:37504465:-	0	-
#Deleted in new
chr19	37505578	37506040	ENSG00000266916.5|ZNF793-AS1|lncRNA|chr19:37505578:37506040:-	0	-
#Deleted in new
chr19	37505845	37506040	ENSG00000266916.5|ZNF793-AS1|lncRNA|chr19:37505845:37506040:-	0	-
#Deleted in new
chr19	37505971	37506040	ENSG00000266916.5|ZNF793-AS1|lncRNA|chr19:37505971:37506040:-	0	-
#Deleted in new
chr19	37506244	37506267	ENSG00000266916.5|ZNF793-AS1|lncRNA|chr19:37506244:37506267:-	0	-
#Deleted in new
chr19	37506582	37506624	ENSG00000266916.5|ZNF793-AS1|lncRNA|chr19:37506582:37506624:-	0	-
#Deleted in new
chr19	37508263	37508403	ENSG00000188227.12|ZNF793|pc|chr19:37508263:37508403:+	0	+
#Deleted in new
chr19	37508264	37508403	ENSG00000188227.12|ZNF793|pc|chr19:37508264:37508403:+	0	+
#Deleted in new
chr19	37520183	37520312	ENSG00000188227.12|ZNF793|pc|chr19:37520183:37520312:+	0	+
#Deleted in new
chr19	37522531	37522647	ENSG00000188227.12|ZNF793|pc|chr19:37522531:37522647:+	0	+
#Deleted in new
chr19	37523404	37523454	ENSG00000188227.12|ZNF793|pc|chr19:37523404:37523454:+	0	+
#Deleted in new
chr19	37523409	37523454	ENSG00000188227.12|ZNF793|pc|chr19:37523409:37523454:+	0	+
#Partially deleted in new
chr19	3752819	3756272	ENSG00000011132.11|APBA3|pc|chr19:3752819:3756272:-	0	-
#Split in new
chr19	37533307	37536530	ENSG00000188227.12|ZNF793|pc|chr19:37533307:37536530:+	0	+
#Deleted in new
chr19	37533485	37533678	ENSG00000188227.12|ZNF793|pc|chr19:37533485:37533678:+	0	+
#Split in new
chr19	37536464	37540289	ENSG00000188227.12|ZNF793|pc|chr19:37536464:37540289:+	0	+
#Split in new
chr19	37536896	37543335	ENSG00000188227.12|ZNF793|pc|chr19:37536896:37543335:+	0	+
#Split in new
chr19	37537514	37540265	ENSG00000188227.12|ZNF793|pc|chr19:37537514:37540265:+	0	+
#Deleted in new
chr19	37542207	37543298	ENSG00000188227.12|ZNF793|pc|chr19:37542207:37543298:+	0	+
#Deleted in new
chr19	37545469	37548413	ENSG00000180458.2|AC022148.1|lncRNA|chr19:37545469:37548413:-	0	-
#Deleted in new
chr19	37546083	37546923	ENSG00000188227.12|ZNF793|pc|chr19:37546083:37546923:+	0	+
#Deleted in new
chr19	3754619	3754748	ENSG00000267138.1|AC005954.1|lncRNA|chr19:3754619:3754748:-	0	-
#Deleted in new
chr19	37548361	37548494	ENSG00000188227.12|ZNF793|pc|chr19:37548361:37548494:+	0	+
#Deleted in new
chr19	37548591	37548762	ENSG00000188227.12|ZNF793|pc|chr19:37548591:37548762:+	0	+
#Deleted in new
chr19	37548848	37549171	ENSG00000180458.2|AC022148.1|lncRNA|chr19:37548848:37549171:-	0	-
#Deleted in new
chr19	37548913	37549155	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37548913:37549155:+	0	+
#Deleted in new
chr19	37548927	37549155	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37548927:37549155:+	0	+
#Deleted in new
chr19	37548946	37549155	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37548946:37549155:+	0	+
#Deleted in new
chr19	37548950	37549155	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37548950:37549155:+	0	+
#Deleted in new
chr19	37548966	37549155	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37548966:37549155:+	0	+
#Deleted in new
chr19	37548974	37549155	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37548974:37549155:+	0	+
#Deleted in new
chr19	37549532	37549614	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37549532:37549614:+	0	+
#Deleted in new
chr19	37550861	37550991	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37550861:37550991:+	0	+
#Deleted in new
chr19	37551370	37551665	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37551370:37551665:+	0	+
#Deleted in new
chr19	37551371	37551665	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37551371:37551665:+	0	+
#Deleted in new
chr19	37551376	37551665	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37551376:37551665:+	0	+
#Deleted in new
chr19	37551405	37551665	ENSG00000171817.16|ZNF540|pc|chr19:37551405:37551665:+	0	+
#Deleted in new
chr19	37551411	37551665	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37551411:37551665:+	0	+
#Deleted in new
chr19	37551604	37551665	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37551604:37551665:+	0	+
#Deleted in new
chr19	3755338	3755556	ENSG00000267205.1|AC005954.2|lncRNA|chr19:3755338:3755556:+	0	+
#Deleted in new
chr19	37554781	37556161	ENSG00000180479.13|ZNF571|pc|chr19:37554781:37556161:-	0	-
#Deleted in new
chr19	37560392	37560874	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37560392:37560874:+	0	+
#Deleted in new
chr19	37562391	37563781	ENSG00000180479.13|ZNF571|pc|chr19:37562391:37563781:-	0	-
#Deleted in new
chr19	3756241	3756517	ENSG00000267205.1|AC005954.2|lncRNA|chr19:3756241:3756517:+	0	+
#Deleted in new
chr19	3756451	3756659	ENSG00000267138.1|AC005954.1|lncRNA|chr19:3756451:3756659:-	0	-
#Partially deleted in new
chr19	37566030	37566089	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37566030:37566089:+	0	+
#Deleted in new
chr19	37567617	37567750	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37567617:37567750:+	0	+
#Deleted in new
chr19	37569849	37569996	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37569849:37569996:+	0	+
#Deleted in new
chr19	37569941	37569996	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37569941:37569996:+	0	+
#Deleted in new
chr19	37585083	37585161	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37585083:37585161:+	0	+
#Deleted in new
chr19	37585083	37585456	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37585083:37585456:+	0	+
#Deleted in new
chr19	37585338	37585374	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37585338:37585374:+	0	+
#Deleted in new
chr19	37585338	37585436	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37585338:37585436:+	0	+
#Deleted in new
chr19	37585338	37585577	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37585338:37585577:+	0	+
#Deleted in new
chr19	37585338	37585759	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37585338:37585759:+	0	+
#Partially deleted in new
chr19	37585338	37587348	ENSG00000267470.5|ZNF571-AS1|lncRNA|chr19:37585338:37587348:+	0	+
#Deleted in new
chr19	37594086	37594746	ENSG00000180479.13|ZNF571|pc|chr19:37594086:37594746:-	0	-
#Deleted in new
chr19	37594219	37594319	ENSG00000180479.13|ZNF571|pc|chr19:37594219:37594319:-	0	-
#Deleted in new
chr19	37594740	37594755	ENSG00000180479.13|ZNF571|pc|chr19:37594740:37594755:-	0	-
#Deleted in new
chr19	37594740	37594761	ENSG00000180479.13|ZNF571|pc|chr19:37594740:37594761:-	0	-
#Deleted in new
chr19	37594740	37594772	ENSG00000180479.13|ZNF571|pc|chr19:37594740:37594772:-	0	-
#Deleted in new
chr19	37594740	37594790	ENSG00000180479.13|ZNF571|pc|chr19:37594740:37594790:-	0	-
#Deleted in new
chr19	37594829	37595095	ENSG00000171817.16|ZNF540|pc|chr19:37594829:37595095:+	0	+
#Deleted in new
chr19	37594875	37595095	ENSG00000171817.16|ZNF540|pc|chr19:37594875:37595095:+	0	+
#Deleted in new
chr19	37594885	37595095	ENSG00000171817.16|ZNF540|pc|chr19:37594885:37595095:+	0	+
#Deleted in new
chr19	37594904	37595095	ENSG00000171817.16|ZNF540|pc|chr19:37594904:37595095:+	0	+
#Deleted in new
chr19	37594908	37595095	ENSG00000171817.16|ZNF540|pc|chr19:37594908:37595095:+	0	+
#Deleted in new
chr19	37594972	37595095	ENSG00000171817.16|ZNF540|pc|chr19:37594972:37595095:+	0	+
#Deleted in new
chr19	37595252	37595438	ENSG00000171817.16|ZNF540|pc|chr19:37595252:37595438:+	0	+
#Deleted in new
chr19	37597447	37597570	ENSG00000171817.16|ZNF540|pc|chr19:37597447:37597570:+	0	+
#Deleted in new
chr19	37613748	37613865	ENSG00000120784.15|ZFP30|pc|chr19:37613748:37613865:-	0	-
#Deleted in new
chr19	37632487	37632920	ENSG00000120784.15|ZFP30|pc|chr19:37632487:37632920:-	0	-
#Deleted in new
chr19	37647869	37647899	ENSG00000120784.15|ZFP30|pc|chr19:37647869:37647899:-	0	-
#Deleted in new
chr19	37647883	37647899	ENSG00000120784.15|ZFP30|pc|chr19:37647883:37647899:-	0	-
#Deleted in new
chr19	37651430	37651548	ENSG00000120784.15|ZFP30|pc|chr19:37651430:37651548:-	0	-
#Deleted in new
chr19	37654711	37654729	ENSG00000120784.15|ZFP30|pc|chr19:37654711:37654729:-	0	-
#Deleted in new
chr19	37654711	37654785	ENSG00000120784.15|ZFP30|pc|chr19:37654711:37654785:-	0	-
#Deleted in new
chr19	37654711	37654879	ENSG00000120784.15|ZFP30|pc|chr19:37654711:37654879:-	0	-
#Deleted in new
chr19	37654714	37654879	ENSG00000120784.15|ZFP30|pc|chr19:37654714:37654879:-	0	-
#Deleted in new
chr19	37655046	37655388	ENSG00000120784.15|ZFP30|pc|chr19:37655046:37655388:-	0	-
#Deleted in new
chr19	37655046	37655409	ENSG00000120784.15|ZFP30|pc|chr19:37655046:37655409:-	0	-
#Deleted in new
chr19	37655046	37655465	ENSG00000120784.15|ZFP30|pc|chr19:37655046:37655465:-	0	-
#Deleted in new
chr19	37655099	37655412	ENSG00000120784.15|ZFP30|pc|chr19:37655099:37655412:-	0	-
#Deleted in new
chr19	37655419	37655467	ENSG00000120784.15|ZFP30|pc|chr19:37655419:37655467:-	0	-
#Deleted in new
chr19	37655662	37655830	ENSG00000120784.15|ZFP30|pc|chr19:37655662:37655830:-	0	-
#Deleted in new
chr19	37656119	37656261	ENSG00000120784.15|ZFP30|pc|chr19:37656119:37656261:-	0	-
#Deleted in new
chr19	37656309	37656421	ENSG00000120784.15|ZFP30|pc|chr19:37656309:37656421:-	0	-
#Deleted in new
chr19	37670653	37670846	ENSG00000196381.10|ZNF781|pc|chr19:37670653:37670846:-	0	-
#Deleted in new
chr19	37678622	37678773	ENSG00000196381.10|ZNF781|pc|chr19:37678622:37678773:-	0	-
#Deleted in new
chr19	3768198	3768575	ENSG00000183617.4|MRPL54|pc|chr19:3768198:3768575:+	0	+
#Deleted in new
chr19	37689864	37689957	ENSG00000267552.6|AC093227.3|pc|chr19:37689864:37689957:-	0	-
#Deleted in new
chr19	37689882	37689957	ENSG00000267552.6|AC093227.3|pc|chr19:37689882:37689957:-	0	-
#Deleted in new
chr19	37689883	37689943	ENSG00000267552.6|AC093227.3|pc|chr19:37689883:37689943:-	0	-
#Partially deleted in new
chr19	3769088	3770959	ENSG00000173976.15|RAX2|pc|chr19:3769088:3770959:-	0	-
#Partially deleted in new
chr19	37699784	37699895	ENSG00000267552.6|AC093227.3|pc|chr19:37699784:37699895:-	0	-
#Deleted in new
chr19	37699819	37699895	ENSG00000198182.12|ZNF607|pc|chr19:37699819:37699895:-	0	-
#Deleted in new
chr19	37706381	37706583	ENSG00000198182.12|ZNF607|pc|chr19:37706381:37706583:-	0	-
#Deleted in new
chr19	37719014	37719125	ENSG00000198182.12|ZNF607|pc|chr19:37719014:37719125:-	0	-
#Deleted in new
chr19	37719014	37719125	ENSG00000267552.6|AC093227.3|pc|chr19:37719014:37719125:-	0	-
#Deleted in new
chr19	37719014	37719187	ENSG00000198182.12|ZNF607|pc|chr19:37719014:37719187:-	0	-
#Deleted in new
chr19	37719014	37719188	ENSG00000198182.12|ZNF607|pc|chr19:37719014:37719188:-	0	-
#Deleted in new
chr19	37719014	37719188	ENSG00000267552.6|AC093227.3|pc|chr19:37719014:37719188:-	0	-
#Deleted in new
chr19	37719268	37719723	ENSG00000198182.12|ZNF607|pc|chr19:37719268:37719723:-	0	-
#Deleted in new
chr19	37719268	37719790	ENSG00000198182.12|ZNF607|pc|chr19:37719268:37719790:-	0	-
#Deleted in new
chr19	3772162	3772211	ENSG00000173976.15|RAX2|pc|chr19:3772162:3772211:-	0	-
#Deleted in new
chr19	3772162	3772221	ENSG00000173976.15|RAX2|pc|chr19:3772162:3772221:-	0	-
#Deleted in new
chr19	37728585	37729784	ENSG00000267152.1|AC093227.1|lncRNA|chr19:37728585:37729784:-	0	-
#Deleted in new
chr19	37730482	37730643	ENSG00000267152.1|AC093227.1|lncRNA|chr19:37730482:37730643:-	0	-
#Deleted in new
chr19	37735832	37736014	ENSG00000189144.13|ZNF573|pc|chr19:37735832:37736014:-	0	-
#Deleted in new
chr19	37740640	37740710	ENSG00000189144.13|ZNF573|pc|chr19:37740640:37740710:-	0	-
#Deleted in new
chr19	37755200	37755261	ENSG00000189144.13|ZNF573|pc|chr19:37755200:37755261:-	0	-
#Deleted in new
chr19	37758475	37758596	ENSG00000189144.13|ZNF573|pc|chr19:37758475:37758596:-	0	-
#Deleted in new
chr19	37759046	37759139	ENSG00000189144.13|ZNF573|pc|chr19:37759046:37759139:-	0	-
#Deleted in new
chr19	37772937	37772982	ENSG00000189144.13|ZNF573|pc|chr19:37772937:37772982:-	0	-
#Deleted in new
chr19	37778432	37778546	ENSG00000189144.13|ZNF573|pc|chr19:37778432:37778546:-	0	-
#Deleted in new
chr19	37779543	37779553	ENSG00000189144.13|ZNF573|pc|chr19:37779543:37779553:-	0	-
#Deleted in new
chr19	37779543	37779560	ENSG00000189144.13|ZNF573|pc|chr19:37779543:37779560:-	0	-
#Deleted in new
chr19	37779543	37779563	ENSG00000189144.13|ZNF573|pc|chr19:37779543:37779563:-	0	-
#Deleted in new
chr19	37779543	37779574	ENSG00000189144.13|ZNF573|pc|chr19:37779543:37779574:-	0	-
#Deleted in new
chr19	37779543	37779583	ENSG00000189144.13|ZNF573|pc|chr19:37779543:37779583:-	0	-
#Deleted in new
chr19	37779543	37779585	ENSG00000189144.13|ZNF573|pc|chr19:37779543:37779585:-	0	-
#Deleted in new
chr19	37779543	37779590	ENSG00000189144.13|ZNF573|pc|chr19:37779543:37779590:-	0	-
#Deleted in new
chr19	37779543	37779878	ENSG00000189144.13|ZNF573|pc|chr19:37779543:37779878:-	0	-
#Deleted in new
chr19	37794140	37794245	ENSG00000189144.13|ZNF573|pc|chr19:37794140:37794245:-	0	-
#Deleted in new
chr19	37799111	37799163	ENSG00000189144.13|ZNF573|pc|chr19:37799111:37799163:-	0	-
#Deleted in new
chr19	37810604	37810800	ENSG00000189144.13|ZNF573|pc|chr19:37810604:37810800:-	0	-
#Deleted in new
chr19	3782817	3782937	ENSG00000007264.14|MATK|pc|chr19:3782817:3782937:-	0	-
#Deleted in new
chr19	3787459	3787715	ENSG00000007264.14|MATK|pc|chr19:3787459:3787715:-	0	-
#Deleted in new
chr19	3789272	3789347	ENSG00000007264.14|MATK|pc|chr19:3789272:3789347:-	0	-
#Deleted in new
chr19	3789272	3789404	ENSG00000007264.14|MATK|pc|chr19:3789272:3789404:-	0	-
#Partially deleted in new
chr19	3793073	3793398	ENSG00000007264.14|MATK|pc|chr19:3793073:3793398:-	0	-
#Deleted in new
chr19	3793129	3793401	ENSG00000007264.14|MATK|pc|chr19:3793129:3793401:-	0	-
#Deleted in new
chr19	37963852	37964282	ENSG00000268051.1|AC008395.1|lncRNA|chr19:37963852:37964282:+	0	+
#Deleted in new
chr19	37964613	37964790	ENSG00000268051.1|AC008395.1|lncRNA|chr19:37964613:37964790:+	0	+
#Partially deleted in new
chr19	3804023	3806125	ENSG00000105278.10|ZFR2|pc|chr19:3804023:3806125:-	0	-
#Deleted in new
chr19	38087755	38087787	ENSG00000105738.10|SIPA1L3|pc|chr19:38087755:38087787:+	0	+
#Deleted in new
chr19	38131653	38131735	ENSG00000105738.10|SIPA1L3|pc|chr19:38131653:38131735:+	0	+
#Deleted in new
chr19	38199835	38200167	ENSG00000268499.1|AC011479.2|lncRNA|chr19:38199835:38200167:+	0	+
#Deleted in new
chr19	38200834	38200934	ENSG00000268499.1|AC011479.2|lncRNA|chr19:38200834:38200934:+	0	+
#Deleted in new
chr19	3820181	3820290	ENSG00000105278.10|ZFR2|pc|chr19:3820181:3820290:-	0	-
#Deleted in new
chr19	38244034	38244134	ENSG00000167642.12|SPINT2|pc|chr19:38244034:38244134:+	0	+
#Partially deleted in new
chr19	38306696	38306990	ENSG00000167645.16|YIF1B|pc|chr19:38306696:38306990:-	0	-
#Deleted in new
chr19	3831659	3831810	ENSG00000105278.10|ZFR2|pc|chr19:3831659:3831810:-	0	-
#Deleted in new
chr19	3831659	3831878	ENSG00000105278.10|ZFR2|pc|chr19:3831659:3831878:-	0	-
#Deleted in new
chr19	38317151	38317273	ENSG00000167645.16|YIF1B|pc|chr19:38317151:38317273:-	0	-
#Deleted in new
chr19	38325042	38325489	ENSG00000099337.4|KCNK6|pc|chr19:38325042:38325489:+	0	+
#Split in new
chr19	38327179	38332076	ENSG00000099337.4|KCNK6|pc|chr19:38327179:38332076:+	0	+
#Deleted in new
chr19	38337739	38337861	ENSG00000099338.22|CATSPERG|pc|chr19:38337739:38337861:+	0	+
#Deleted in new
chr19	38349014	38349629	ENSG00000099338.22|CATSPERG|pc|chr19:38349014:38349629:+	0	+
#Partially deleted in new
chr19	38375056	38375292	ENSG00000099341.11|PSMD8|pc|chr19:38375056:38375292:+	0	+
#Deleted in new
chr19	38381148	38381312	ENSG00000099341.11|PSMD8|pc|chr19:38381148:38381312:+	0	+
#Partially deleted in new
chr19	38382598	38382847	ENSG00000099341.11|PSMD8|pc|chr19:38382598:38382847:+	0	+
#Deleted in new
chr19	38404712	38404806	ENSG00000130244.12|FAM98C|pc|chr19:38404712:38404806:+	0	+
#Partially deleted in new
chr19	38405518	38409083	ENSG00000130244.12|FAM98C|pc|chr19:38405518:38409083:+	0	+
#Deleted in new
chr19	3851804	3852614	ENSG00000105278.10|ZFR2|pc|chr19:3851804:3852614:-	0	-
#Deleted in new
chr19	3851812	3852614	ENSG00000105278.10|ZFR2|pc|chr19:3851812:3852614:-	0	-
#Deleted in new
chr19	3852361	3852614	ENSG00000105278.10|ZFR2|pc|chr19:3852361:3852614:-	0	-
#Deleted in new
chr19	3852439	3852614	ENSG00000105278.10|ZFR2|pc|chr19:3852439:3852614:-	0	-
#Partially deleted in new
chr19	38528089	38528194	ENSG00000196218.12|RYR1|pc|chr19:38528089:38528194:+	0	+
#Deleted in new
chr19	3855401	3855559	ENSG00000105278.10|ZFR2|pc|chr19:3855401:3855559:-	0	-
#Deleted in new
chr19	3855401	3855590	ENSG00000105278.10|ZFR2|pc|chr19:3855401:3855590:-	0	-
#Deleted in new
chr19	3856959	3857021	ENSG00000105278.10|ZFR2|pc|chr19:3856959:3857021:-	0	-
#Deleted in new
chr19	38589177	38589275	ENSG00000104814.12|MAP4K1|pc|chr19:38589177:38589275:-	0	-
#Deleted in new
chr19	38592449	38592497	ENSG00000104814.12|MAP4K1|pc|chr19:38592449:38592497:-	0	-
#Partially deleted in new
chr19	38626027	38626332	ENSG00000178982.9|EIF3K|pc|chr19:38626027:38626332:+	0	+
#Deleted in new
chr19	38628502	38628568	ENSG00000178982.9|EIF3K|pc|chr19:38628502:38628568:+	0	+
#Deleted in new
chr19	38630701	38630968	ENSG00000178982.9|EIF3K|pc|chr19:38630701:38630968:+	0	+
#Partially deleted in new
chr19	38632025	38632496	ENSG00000178982.9|EIF3K|pc|chr19:38632025:38632496:+	0	+
#Partially deleted in new
chr1	93866282	93869944	ENSG00000067334.13|DNTTIP2|pc|chr1:93866282:93869944:-	0	-
#Deleted in new
chr19	3868964	3869015	ENSG00000105278.10|ZFR2|pc|chr19:3868964:3869015:-	0	-
#Deleted in new
chr19	3868964	3869023	ENSG00000105278.10|ZFR2|pc|chr19:3868964:3869023:-	0	-
#Deleted in new
chr19	3868964	3869028	ENSG00000105278.10|ZFR2|pc|chr19:3868964:3869028:-	0	-
#Deleted in new
chr19	3868964	3869029	ENSG00000105278.10|ZFR2|pc|chr19:3868964:3869029:-	0	-
#Deleted in new
chr19	3868964	3869032	ENSG00000105278.10|ZFR2|pc|chr19:3868964:3869032:-	0	-
#Partially deleted in new
chr19	38742242	38742325	ENSG00000182472.8|CAPN12|pc|chr19:38742242:38742325:-	0	-
#Partially deleted in new
chr19	38789210	38789232	ENSG00000178934.4|LGALS7B|pc|chr19:38789210:38789232:+	0	+
#Deleted in new
chr19	3879863	3879955	ENSG00000167654.17|ATCAY|pc|chr19:3879863:3879955:+	0	+
#Deleted in new
chr19	38820165	38820492	ENSG00000268756.1|AC104534.1|lncRNA|chr19:38820165:38820492:+	0	+
#Deleted in new
chr19	38822984	38823223	ENSG00000268756.1|AC104534.1|lncRNA|chr19:38822984:38823223:+	0	+
#Deleted in new
chr19	38844728	38844934	ENSG00000269688.1|AC008982.2|lncRNA|chr19:38844728:38844934:-	0	-
#Deleted in new
chr19	38845212	38845499	ENSG00000269688.1|AC008982.2|lncRNA|chr19:38845212:38845499:-	0	-
#Deleted in new
chr19	38851067	38851155	ENSG00000104824.16|HNRNPL|pc|chr19:38851067:38851155:-	0	-
#Partially deleted in new
chr19	38867833	38869410	ENSG00000187994.13|RINL|pc|chr19:38867833:38869410:-	0	-
#Deleted in new
chr19	38873550	38873763	ENSG00000269050.1|AC011455.1|lncRNA|chr19:38873550:38873763:+	0	+
#Partially deleted in new
chr19	38879631	38880153	ENSG00000068903.19|SIRT2|pc|chr19:38879631:38880153:-	0	-
#Deleted in new
chr19	38890564	38890662	ENSG00000068903.19|SIRT2|pc|chr19:38890564:38890662:-	0	-
#Partially deleted in new
chr19	38898793	38898918	ENSG00000068903.19|SIRT2|pc|chr19:38898793:38898918:-	0	-
#Deleted in new
chr19	38922001	38922078	ENSG00000104835.14|SARS2|pc|chr19:38922001:38922078:-	0	-
#Deleted in new
chr19	38922011	38922078	ENSG00000104835.14|SARS2|pc|chr19:38922011:38922078:-	0	-
#Deleted in new
chr19	38928268	38928350	ENSG00000104835.14|SARS2|pc|chr19:38928268:38928350:-	0	-
#Partially deleted in new
chr19	38931275	38931861	ENSG00000128626.11|MRPS12|pc|chr19:38931275:38931861:+	0	+
#Deleted in new
chr19	38935296	38938632	ENSG00000269486.2|AC011455.2|lncRNA|chr19:38935296:38938632:-	0	-
#Deleted in new
chr19	3893563	3893669	ENSG00000167654.17|ATCAY|pc|chr19:3893563:3893669:+	0	+
#Partially deleted in new
chr19	38941400	38942751	ENSG00000269190.5|FBXO17|pc|chr19:38941400:38942751:-	0	-
#Deleted in new
chr19	3895126	3895197	ENSG00000167654.17|ATCAY|pc|chr19:3895126:3895197:+	0	+
#Deleted in new
chr19	38952572	38952687	ENSG00000269190.5|FBXO17|pc|chr19:38952572:38952687:-	0	-
#Deleted in new
chr19	38975585	38975702	ENSG00000269190.5|FBXO17|pc|chr19:38975585:38975702:-	0	-
#Deleted in new
chr19	38975585	38975910	ENSG00000269190.5|FBXO17|pc|chr19:38975585:38975910:-	0	-
#Deleted in new
chr19	38990713	38990761	ENSG00000161243.8|FBXO27|pc|chr19:38990713:38990761:-	0	-
#Deleted in new
chr19	39014386	39014547	ENSG00000161243.8|FBXO27|pc|chr19:39014386:39014547:-	0	-
#Deleted in new
chr19	39024024	39024242	ENSG00000161243.8|FBXO27|pc|chr19:39024024:39024242:-	0	-
#Deleted in new
chr19	39030435	39030547	ENSG00000267992.1|AC010605.1|lncRNA|chr19:39030435:39030547:+	0	+
#Deleted in new
chr19	39134881	39135204	ENSG00000269172.1|AC011443.1|lncRNA|chr19:39134881:39135204:-	0	-
#Deleted in new
chr19	39152119	39152392	ENSG00000130669.17|PAK4|pc|chr19:39152119:39152392:+	0	+
#Deleted in new
chr19	39168610	39168840	ENSG00000130669.17|PAK4|pc|chr19:39168610:39168840:+	0	+
#Deleted in new
chr19	39168624	39168840	ENSG00000130669.17|PAK4|pc|chr19:39168624:39168840:+	0	+
#Deleted in new
chr19	3922158	3922222	ENSG00000167654.17|ATCAY|pc|chr19:3922158:3922222:+	0	+
#Deleted in new
chr19	3926257	3926316	ENSG00000167654.17|ATCAY|pc|chr19:3926257:3926316:+	0	+
#Deleted in new
chr19	39354003	39354066	ENSG00000179134.15|SAMD4B|pc|chr19:39354003:39354066:+	0	+
#Deleted in new
chr19	39354005	39354066	ENSG00000179134.15|SAMD4B|pc|chr19:39354005:39354066:+	0	+
#Partially deleted in new
chr19	39359904	39360148	ENSG00000179134.15|SAMD4B|pc|chr19:39359904:39360148:+	0	+
#Deleted in new
chr19	39387158	39387227	ENSG00000006712.14|PAF1|pc|chr19:39387158:39387227:-	0	-
#Deleted in new
chr19	39392651	39392802	ENSG00000063322.13|MED29|pc|chr19:39392651:39392802:+	0	+
#Partially deleted in new
chr19	39433664	39435708	ENSG00000105193.8|RPS16|pc|chr19:39433664:39435708:-	0	-
#Deleted in new
chr19	39439571	39439841	ENSG00000196235.13|SUPT5H|pc|chr19:39439571:39439841:+	0	+
#Deleted in new
chr19	39439796	39439841	ENSG00000196235.13|SUPT5H|pc|chr19:39439796:39439841:+	0	+
#Deleted in new
chr19	39439939	39439984	ENSG00000196235.13|SUPT5H|pc|chr19:39439939:39439984:+	0	+
#Deleted in new
chr19	39441642	39441725	ENSG00000196235.13|SUPT5H|pc|chr19:39441642:39441725:+	0	+
#Partially deleted in new
chr19	39467453	39468861	ENSG00000196235.13|SUPT5H|pc|chr19:39467453:39468861:+	0	+
#Partially deleted in new
chr19	39469562	39470274	ENSG00000196235.13|SUPT5H|pc|chr19:39469562:39470274:+	0	+
#Partially deleted in new
chr19	39485038	39485602	ENSG00000105197.10|TIMM50|pc|chr19:39485038:39485602:+	0	+
#Deleted in new
chr19	39485151	39485263	ENSG00000105197.10|TIMM50|pc|chr19:39485151:39485263:+	0	+
#Deleted in new
chr19	39491511	39493785	ENSG00000105197.10|TIMM50|pc|chr19:39491511:39493785:+	0	+
#Deleted in new
chr19	39491896	39492722	ENSG00000105197.10|TIMM50|pc|chr19:39491896:39492722:+	0	+
#Deleted in new
chr19	39492416	39492768	ENSG00000105197.10|TIMM50|pc|chr19:39492416:39492768:+	0	+
#Deleted in new
chr19	39493294	39493715	ENSG00000105197.10|TIMM50|pc|chr19:39493294:39493715:+	0	+
#Deleted in new
chr19	39518479	39518491	ENSG00000186838.13|SELENOV|pc|chr19:39518479:39518491:+	0	+
#Deleted in new
chr19	39531336	39531513	ENSG00000176401.5|EID2B|pc|chr19:39531336:39531513:-	0	-
#Deleted in new
chr19	39533115	39533236	ENSG00000269792.1|AC011500.3|lncRNA|chr19:39533115:39533236:+	0	+
#Deleted in new
chr19	39534333	39534422	ENSG00000269792.1|AC011500.3|lncRNA|chr19:39534333:39534422:+	0	+
#Partially deleted in new
chr19	3959638	3960104	ENSG00000167657.13|DAPK3|pc|chr19:3959638:3960104:-	0	-
#Deleted in new
chr19	39602500	39602583	ENSG00000105198.10|LGALS13|pc|chr19:39602500:39602583:+	0	+
#Deleted in new
chr19	39602523	39602583	ENSG00000105198.10|LGALS13|pc|chr19:39602523:39602583:+	0	+
#Deleted in new
chr19	39602536	39602583	ENSG00000105198.10|LGALS13|pc|chr19:39602536:39602583:+	0	+
#Deleted in new
chr19	39604601	39604678	ENSG00000105198.10|LGALS13|pc|chr19:39604601:39604678:+	0	+
#Deleted in new
chr19	39605091	39605388	ENSG00000105198.10|LGALS13|pc|chr19:39605091:39605388:+	0	+
#Deleted in new
chr19	39605177	39605388	ENSG00000105198.10|LGALS13|pc|chr19:39605177:39605388:+	0	+
#Deleted in new
chr19	39605190	39605388	ENSG00000105198.10|LGALS13|pc|chr19:39605190:39605388:+	0	+
#Deleted in new
chr19	39607222	39607259	ENSG00000105198.10|LGALS13|pc|chr19:39607222:39607259:+	0	+
#Deleted in new
chr19	39607222	39607336	ENSG00000105198.10|LGALS13|pc|chr19:39607222:39607336:+	0	+
#Deleted in new
chr19	39607222	39607473	ENSG00000105198.10|LGALS13|pc|chr19:39607222:39607473:+	0	+
#Deleted in new
chr19	39607222	39607476	ENSG00000105198.10|LGALS13|pc|chr19:39607222:39607476:+	0	+
#Deleted in new
chr19	39607339	39607348	ENSG00000105198.10|LGALS13|pc|chr19:39607339:39607348:+	0	+
#Partially deleted in new
chr19	3961008	3961840	ENSG00000167657.13|DAPK3|pc|chr19:3961008:3961840:-	0	-
#Deleted in new
chr19	39655893	39655976	ENSG00000249861.3|LGALS16|pc|chr19:39655893:39655976:+	0	+
#Deleted in new
chr19	39655918	39655976	ENSG00000249861.3|LGALS16|pc|chr19:39655918:39655976:+	0	+
#Deleted in new
chr19	39657827	39657959	ENSG00000249861.3|LGALS16|pc|chr19:39657827:39657959:+	0	+
#Deleted in new
chr19	39657882	39657959	ENSG00000249861.3|LGALS16|pc|chr19:39657882:39657959:+	0	+
#Deleted in new
chr19	39658459	39658670	ENSG00000249861.3|LGALS16|pc|chr19:39658459:39658670:+	0	+
#Deleted in new
chr19	39660394	39660647	ENSG00000249861.3|LGALS16|pc|chr19:39660394:39660647:+	0	+
#Deleted in new
chr19	39685243	39685418	ENSG00000269460.1|AC005515.1|lncRNA|chr19:39685243:39685418:+	0	+
#Deleted in new
chr19	39694463	39694577	ENSG00000269460.1|AC005515.1|lncRNA|chr19:39694463:39694577:+	0	+
#Partially deleted in new
chr19	3969673	3969938	ENSG00000167657.13|DAPK3|pc|chr19:3969673:3969938:-	0	-
#Deleted in new
chr19	39704305	39704543	ENSG00000006659.12|LGALS14|pc|chr19:39704305:39704543:+	0	+
#Deleted in new
chr19	39704480	39704543	ENSG00000006659.12|LGALS14|pc|chr19:39704480:39704543:+	0	+
#Deleted in new
chr19	39704501	39704543	ENSG00000006659.12|LGALS14|pc|chr19:39704501:39704543:+	0	+
#Deleted in new
chr19	39705704	39706009	ENSG00000006659.12|LGALS14|pc|chr19:39705704:39706009:+	0	+
#Deleted in new
chr19	3970593	3970624	ENSG00000167657.13|DAPK3|pc|chr19:3970593:3970624:-	0	-
#Deleted in new
chr19	39706596	39706673	ENSG00000006659.12|LGALS14|pc|chr19:39706596:39706673:+	0	+
#Deleted in new
chr19	39707177	39707388	ENSG00000006659.12|LGALS14|pc|chr19:39707177:39707388:+	0	+
#Deleted in new
chr19	39709196	39709313	ENSG00000006659.12|LGALS14|pc|chr19:39709196:39709313:+	0	+
#Deleted in new
chr19	39709196	39709412	ENSG00000006659.12|LGALS14|pc|chr19:39709196:39709412:+	0	+
#Deleted in new
chr19	39709196	39709444	ENSG00000006659.12|LGALS14|pc|chr19:39709196:39709444:+	0	+
#Deleted in new
chr19	3970920	3971070	ENSG00000167657.13|DAPK3|pc|chr19:3970920:3971070:-	0	-
#Deleted in new
chr19	3971021	3971123	ENSG00000167657.13|DAPK3|pc|chr19:3971021:3971123:-	0	-
#Deleted in new
chr19	39731249	39731505	ENSG00000105205.6|CLC|pc|chr19:39731249:39731505:-	0	-
#Deleted in new
chr19	39734282	39734493	ENSG00000105205.6|CLC|pc|chr19:39734282:39734493:-	0	-
#Deleted in new
chr19	39734996	39735073	ENSG00000105205.6|CLC|pc|chr19:39734996:39735073:-	0	-
#Deleted in new
chr19	39737937	39738028	ENSG00000105205.6|CLC|pc|chr19:39737937:39738028:-	0	-
#Deleted in new
chr19	397588	397633	ENSG00000267443.2|AC010641.1|lncRNA|chr19:397588:397633:+	0	+
#Deleted in new
chr19	39776594	39776675	ENSG00000213921.7|LEUTX|pc|chr19:39776594:39776675:+	0	+
#Deleted in new
chr19	39778882	39778927	ENSG00000213921.7|LEUTX|pc|chr19:39778882:39778927:+	0	+
#Deleted in new
chr19	39784526	39784678	ENSG00000213921.7|LEUTX|pc|chr19:39784526:39784678:+	0	+
#Deleted in new
chr19	39785697	39786135	ENSG00000213921.7|LEUTX|pc|chr19:39785697:39786135:+	0	+
#Deleted in new
chr19	39785697	39786167	ENSG00000213921.7|LEUTX|pc|chr19:39785697:39786167:+	0	+
#Duplicated in new
chr19	3980513	3980709	ENSG00000167658.15|EEF2|pc|chr19:3980513:3980709:-	0	-
#Partially deleted in new
chr19	3984792	3985112	ENSG00000167658.15|EEF2|pc|chr19:3984792:3985112:-	0	-
#Partially deleted in new
chr19	398689	399173	ENSG00000267443.2|AC010641.1|lncRNA|chr19:398689:399173:+	0	+
#Deleted in new
chr19	39887118	39887292	ENSG00000275395.5|FCGBP|pc|chr19:39887118:39887292:-	0	-
#Deleted in new
chr19	39984133	39984271	ENSG00000187187.13|ZNF546|pc|chr19:39984133:39984271:+	0	+
#Deleted in new
chr19	39993409	39993571	ENSG00000187187.13|ZNF546|pc|chr19:39993409:39993571:+	0	+
#Deleted in new
chr19	39994813	39994991	ENSG00000187187.13|ZNF546|pc|chr19:39994813:39994991:+	0	+
#Deleted in new
chr19	39997035	39997157	ENSG00000187187.13|ZNF546|pc|chr19:39997035:39997157:+	0	+
#Deleted in new
chr19	39997037	39997157	ENSG00000187187.13|ZNF546|pc|chr19:39997037:39997157:+	0	+
#Deleted in new
chr19	39997059	39997157	ENSG00000187187.13|ZNF546|pc|chr19:39997059:39997157:+	0	+
#Deleted in new
chr19	39997062	39997157	ENSG00000187187.13|ZNF546|pc|chr19:39997062:39997157:+	0	+
#Deleted in new
chr19	39997075	39997157	ENSG00000187187.13|ZNF546|pc|chr19:39997075:39997157:+	0	+
#Deleted in new
chr19	39997119	39997157	ENSG00000187187.13|ZNF546|pc|chr19:39997119:39997157:+	0	+
#Deleted in new
chr19	39997235	39997269	ENSG00000187187.13|ZNF546|pc|chr19:39997235:39997269:+	0	+
#Deleted in new
chr19	39997860	39997915	ENSG00000187187.13|ZNF546|pc|chr19:39997860:39997915:+	0	+
#Deleted in new
chr19	39998247	39998303	ENSG00000187187.13|ZNF546|pc|chr19:39998247:39998303:+	0	+
#Deleted in new
chr19	39998247	39998332	ENSG00000187187.13|ZNF546|pc|chr19:39998247:39998332:+	0	+
#Deleted in new
chr19	39998247	39998410	ENSG00000187187.13|ZNF546|pc|chr19:39998247:39998410:+	0	+
#Deleted in new
chr19	39998247	39998550	ENSG00000187187.13|ZNF546|pc|chr19:39998247:39998550:+	0	+
#Deleted in new
chr19	39999600	39999670	ENSG00000187187.13|ZNF546|pc|chr19:39999600:39999670:+	0	+
#Deleted in new
chr19	39999600	39999830	ENSG00000187187.13|ZNF546|pc|chr19:39999600:39999830:+	0	+
#Deleted in new
chr19	40011250	40011348	ENSG00000187187.13|ZNF546|pc|chr19:40011250:40011348:+	0	+
#Split in new
chr19	40013664	40021041	ENSG00000187187.13|ZNF546|pc|chr19:40013664:40021041:+	0	+
#Deleted in new
chr19	40016427	40016809	ENSG00000187187.13|ZNF546|pc|chr19:40016427:40016809:+	0	+
#Duplicated in new
chr19	40047280	40047470	ENSG00000128000.15|ZNF780B|pc|chr19:40047280:40047470:-	0	-
#Partially deleted in new
chr19	40048917	40049056	ENSG00000128000.15|ZNF780B|pc|chr19:40048917:40049056:-	0	-
#Split in new
chr19	40071005	40072649	ENSG00000197782.14|ZNF780A|pc|chr19:40071005:40072649:-	0	-
#Deleted in new
chr19	40072836	40072979	ENSG00000197782.14|ZNF780A|pc|chr19:40072836:40072979:-	0	-
#Split in new
chr19	40090753	40094406	ENSG00000269296.1|AC005614.1|lncRNA|chr19:40090753:40094406:+	0	+
#Deleted in new
chr19	4017702	4017800	ENSG00000105229.6|PIAS4|pc|chr19:4017702:4017800:+	0	+
#Deleted in new
chr19	4018434	4018736	ENSG00000105229.6|PIAS4|pc|chr19:4018434:4018736:+	0	+
#Deleted in new
chr19	40224487	40224493	ENSG00000105219.8|CNTD2|pc|chr19:40224487:40224493:-	0	-
#Deleted in new
chr19	40224487	40224643	ENSG00000105219.8|CNTD2|pc|chr19:40224487:40224643:-	0	-
#Deleted in new
chr19	40224721	40224811	ENSG00000105219.8|CNTD2|pc|chr19:40224721:40224811:-	0	-
#Deleted in new
chr19	40224721	40224937	ENSG00000105219.8|CNTD2|pc|chr19:40224721:40224937:-	0	-
#Deleted in new
chr19	40226374	40226657	ENSG00000105219.8|CNTD2|pc|chr19:40226374:40226657:-	0	-
#Deleted in new
chr19	40226374	40226690	ENSG00000105219.8|CNTD2|pc|chr19:40226374:40226690:-	0	-
#Split in new
chr19	40236256	40238091	ENSG00000105221.16|AKT2|pc|chr19:40236256:40238091:-	0	-
#Deleted in new
chr19	40237060	40237307	ENSG00000105221.16|AKT2|pc|chr19:40237060:40237307:-	0	-
#Deleted in new
chr19	40240261	40240299	ENSG00000105221.16|AKT2|pc|chr19:40240261:40240299:-	0	-
#Deleted in new
chr19	40244318	40244414	ENSG00000105221.16|AKT2|pc|chr19:40244318:40244414:-	0	-
#Partially deleted in new
chr19	40269422	40269589	ENSG00000105221.16|AKT2|pc|chr19:40269422:40269589:-	0	-
#Deleted in new
chr19	40270497	40270769	ENSG00000105221.16|AKT2|pc|chr19:40270497:40270769:-	0	-
#Deleted in new
chr19	40332521	40332643	ENSG00000160392.13|C19orf47|pc|chr19:40332521:40332643:-	0	-
#Deleted in new
chr19	40334834	40334904	ENSG00000160392.13|C19orf47|pc|chr19:40334834:40334904:-	0	-
#Deleted in new
chr19	40343474	40343805	ENSG00000160392.13|C19orf47|pc|chr19:40343474:40343805:-	0	-
#Partially deleted in new
chr19	40348699	40348724	ENSG00000105223.19|PLD3|pc|chr19:40348699:40348724:+	0	+
#Partially deleted in new
chr19	40355841	40360606	ENSG00000279759.1|AC118344.2|lncRNA|chr19:40355841:40360606:+	0	+
#Deleted in new
chr19	40442322	40442515	ENSG00000167565.12|SERTAD3|pc|chr19:40442322:40442515:-	0	-
#Deleted in new
chr19	40442326	40442598	ENSG00000167565.12|SERTAD3|pc|chr19:40442326:40442598:-	0	-
#Deleted in new
chr19	40524543	40524629	ENSG00000160460.15|SPTBN4|pc|chr19:40524543:40524629:+	0	+
#Deleted in new
chr19	40585572	40585817	ENSG00000160410.14|SHKBP1|pc|chr19:40585572:40585817:+	0	+
#Partially deleted in new
chr19	40592882	40593181	ENSG00000090006.17|LTBP4|pc|chr19:40592882:40593181:+	0	+
#Deleted in new
chr19	40615337	40615377	ENSG00000090006.17|LTBP4|pc|chr19:40615337:40615377:+	0	+
#Partially deleted in new
chr19	40704167	40705447	ENSG00000123815.11|COQ8B|pc|chr19:40704167:40705447:-	0	-
#Partially deleted in new
chr19	40740855	40741439	ENSG00000188493.14|C19orf54|pc|chr19:40740855:40741439:-	0	-
#Partially deleted in new
chr19	40740855	40742770	ENSG00000188493.14|C19orf54|pc|chr19:40740855:40742770:-	0	-
#Deleted in new
chr19	40741365	40741680	ENSG00000188493.14|C19orf54|pc|chr19:40741365:40741680:-	0	-
#Deleted in new
chr19	40741691	40741864	ENSG00000188493.14|C19orf54|pc|chr19:40741691:40741864:-	0	-
#Deleted in new
chr19	40741693	40741864	ENSG00000188493.14|C19orf54|pc|chr19:40741693:40741864:-	0	-
#Deleted in new
chr19	40741790	40741864	ENSG00000188493.14|C19orf54|pc|chr19:40741790:40741864:-	0	-
#Deleted in new
chr19	40741821	40741864	ENSG00000188493.14|C19orf54|pc|chr19:40741821:40741864:-	0	-
#Deleted in new
chr19	40742072	40742189	ENSG00000188493.14|C19orf54|pc|chr19:40742072:40742189:-	0	-
#Deleted in new
chr19	40758783	40758869	ENSG00000077312.8|SNRPA|pc|chr19:40758783:40758869:+	0	+
#Deleted in new
chr19	40771647	40772063	ENSG00000261857.6|MIA|pc|chr19:40771647:40772063:+	0	+
#Deleted in new
chr19	40771647	40772063	ENSG00000268975.1|MIA-RAB4B|pc|chr19:40771647:40772063:+	0	+
#Deleted in new
chr19	40779779	40779891	ENSG00000282951.1|AC008537.4|lncRNA|chr19:40779779:40779891:-	0	-
#Deleted in new
chr19	40794525	40794799	ENSG00000282951.1|AC008537.4|lncRNA|chr19:40794525:40794799:-	0	-
#Deleted in new
chr19	40831220	40831577	ENSG00000269843.1|AC008537.2|lncRNA|chr19:40831220:40831577:-	0	-
#Deleted in new
chr19	40837085	40837210	ENSG00000269843.1|AC008537.2|lncRNA|chr19:40837085:40837210:-	0	-
#Deleted in new
chr19	40840158	40842039	ENSG00000279108.1|AC008537.3|lncRNA|chr19:40840158:40842039:+	0	+
#Duplicated in new
chr19	40880478	40880628	ENSG00000198077.10|CYP2A7|pc|chr19:40880478:40880628:-	0	-
#Partially deleted in new
chr19	4094452	4095449	ENSG00000126934.13|MAP2K2|pc|chr19:4094452:4095449:-	0	-
#Deleted in new
chr19	40946346	40946545	ENSG00000269353.1|AC092071.1|lncRNA|chr19:40946346:40946545:+	0	+
#Partially deleted in new
chr19	4099200	4100679	ENSG00000126934.13|MAP2K2|pc|chr19:4099200:4100679:-	0	-
#Deleted in new
chr19	4099989	4100072	ENSG00000126934.13|MAP2K2|pc|chr19:4099989:4100072:-	0	-
#Partially deleted in new
chr19	4100458	4101143	ENSG00000126934.13|MAP2K2|pc|chr19:4100458:4101143:-	0	-
#Deleted in new
chr19	41007478	41007531	ENSG00000197408.8|CYP2B6|pc|chr19:41007478:41007531:+	0	+
#Split in new
chr19	41016645	41017847	ENSG00000197408.8|CYP2B6|pc|chr19:41016645:41017847:+	0	+
#Split in new
chr19	41016645	41018398	ENSG00000197408.8|CYP2B6|pc|chr19:41016645:41018398:+	0	+
#Partially deleted in new
chr19	4102375	4103204	ENSG00000126934.13|MAP2K2|pc|chr19:4102375:4103204:-	0	-
#Deleted in new
chr19	4102816	4103213	ENSG00000126934.13|MAP2K2|pc|chr19:4102816:4103213:-	0	-
#Deleted in new
chr19	4103411	4103484	ENSG00000126934.13|MAP2K2|pc|chr19:4103411:4103484:-	0	-
#Deleted in new
chr19	4104622	4104792	ENSG00000126934.13|MAP2K2|pc|chr19:4104622:4104792:-	0	-
#Partially deleted in new
chr19	41226754	41226912	ENSG00000167601.11|AXL|pc|chr19:41226754:41226912:+	0	+
#Partially deleted in new
chr19	41262661	41263016	ENSG00000105323.16|HNRNPUL1|pc|chr19:41262661:41263016:+	0	+
#Partially deleted in new
chr19	41262670	41262981	ENSG00000105323.16|HNRNPUL1|pc|chr19:41262670:41262981:+	0	+
#Deleted in new
chr19	41278338	41278443	ENSG00000105323.16|HNRNPUL1|pc|chr19:41278338:41278443:+	0	+
#Deleted in new
chr19	41291878	41291884	ENSG00000105323.16|HNRNPUL1|pc|chr19:41291878:41291884:+	0	+
#Deleted in new
chr19	41361009	41361203	ENSG00000123810.7|B9D2|pc|chr19:41361009:41361203:-	0	-
#Deleted in new
chr19	41362982	41363077	ENSG00000123810.7|B9D2|pc|chr19:41362982:41363077:-	0	-
#Deleted in new
chr19	41400334	41400365	ENSG00000268987.1|AC011462.3|lncRNA|chr19:41400334:41400365:+	0	+
#Deleted in new
chr19	41415381	41415494	ENSG00000248098.11|BCKDHA|pc|chr19:41415381:41415494:+	0	+
#Deleted in new
chr19	41418724	41418817	ENSG00000248098.11|BCKDHA|pc|chr19:41418724:41418817:+	0	+
#Partially deleted in new
chr19	41438965	41440692	ENSG00000105341.18|DMAC2|pc|chr19:41438965:41440692:-	0	-
#Deleted in new
chr19	41439473	41439537	ENSG00000105341.18|DMAC2|pc|chr19:41439473:41439537:-	0	-
#Deleted in new
chr19	41439473	41439539	ENSG00000105341.18|DMAC2|pc|chr19:41439473:41439539:-	0	-
#Deleted in new
chr19	41439473	41439576	ENSG00000105341.18|DMAC2|pc|chr19:41439473:41439576:-	0	-
#Deleted in new
chr19	41440480	41440717	ENSG00000105341.18|DMAC2|pc|chr19:41440480:41440717:-	0	-
#Deleted in new
chr19	41454168	41456487	ENSG00000267107.6|PCAT19|lncRNA|chr19:41454168:41456487:-	0	-
#Deleted in new
chr19	41454537	41454727	ENSG00000267107.6|PCAT19|lncRNA|chr19:41454537:41454727:-	0	-
#Deleted in new
chr19	41455316	41456487	ENSG00000267107.6|PCAT19|lncRNA|chr19:41455316:41456487:-	0	-
#Deleted in new
chr19	41455695	41456487	ENSG00000267107.6|PCAT19|lncRNA|chr19:41455695:41456487:-	0	-
#Deleted in new
chr19	41455778	41456487	ENSG00000267107.6|PCAT19|lncRNA|chr19:41455778:41456487:-	0	-
#Deleted in new
chr19	41456028	41456487	ENSG00000267107.6|PCAT19|lncRNA|chr19:41456028:41456487:-	0	-
#Deleted in new
chr19	41456255	41456487	ENSG00000267107.6|PCAT19|lncRNA|chr19:41456255:41456487:-	0	-
#Deleted in new
chr19	41456360	41456487	ENSG00000267107.6|PCAT19|lncRNA|chr19:41456360:41456487:-	0	-
#Deleted in new
chr19	41456590	41456923	ENSG00000267107.6|PCAT19|lncRNA|chr19:41456590:41456923:-	0	-
#Deleted in new
chr19	41456615	41456923	ENSG00000267107.6|PCAT19|lncRNA|chr19:41456615:41456923:-	0	-
#Deleted in new
chr19	41474465	41474539	ENSG00000267107.6|PCAT19|lncRNA|chr19:41474465:41474539:-	0	-
#Deleted in new
chr19	41479080	41479141	ENSG00000267107.6|PCAT19|lncRNA|chr19:41479080:41479141:-	0	-
#Deleted in new
chr19	41479080	41479143	ENSG00000267107.6|PCAT19|lncRNA|chr19:41479080:41479143:-	0	-
#Deleted in new
chr19	41479080	41479284	ENSG00000267107.6|PCAT19|lncRNA|chr19:41479080:41479284:-	0	-
#Partially deleted in new
chr1	94148987	94150515	ENSG00000137962.12|ARHGAP29|pc|chr1:94148987:94150515:-	0	-
#Deleted in new
chr19	41494539	41495427	ENSG00000267107.6|PCAT19|lncRNA|chr19:41494539:41495427:-	0	-
#Deleted in new
chr19	41495301	41495427	ENSG00000267107.6|PCAT19|lncRNA|chr19:41495301:41495427:-	0	-
#Deleted in new
chr1	94149846	94149883	ENSG00000137962.12|ARHGAP29|pc|chr1:94149846:94149883:-	0	-
#Deleted in new
chr19	41500583	41500629	ENSG00000267107.6|PCAT19|lncRNA|chr19:41500583:41500629:-	0	-
#Deleted in new
chr19	41500583	41500644	ENSG00000267107.6|PCAT19|lncRNA|chr19:41500583:41500644:-	0	-
#Deleted in new
chr19	41500583	41500649	ENSG00000267107.6|PCAT19|lncRNA|chr19:41500583:41500649:-	0	-
#Deleted in new
chr19	41531205	41531333	ENSG00000268355.1|AC243960.3|lncRNA|chr19:41531205:41531333:+	0	+
#Deleted in new
chr19	41531286	41531575	ENSG00000268355.1|AC243960.3|lncRNA|chr19:41531286:41531575:+	0	+
#Deleted in new
chr19	41531425	41531877	ENSG00000268355.1|AC243960.3|lncRNA|chr19:41531425:41531877:+	0	+
#Deleted in new
chr19	41531869	41532174	ENSG00000268355.1|AC243960.3|lncRNA|chr19:41531869:41532174:+	0	+
#Deleted in new
chr19	41535182	41536900	ENSG00000270164.1|LINC01480|lncRNA|chr19:41535182:41536900:+	0	+
#Deleted in new
chr19	41535339	41535783	ENSG00000270164.1|LINC01480|lncRNA|chr19:41535339:41535783:+	0	+
#Deleted in new
chr19	41535497	41535601	ENSG00000270164.1|LINC01480|lncRNA|chr19:41535497:41535601:+	0	+
#Deleted in new
chr19	41535566	41535601	ENSG00000270164.1|LINC01480|lncRNA|chr19:41535566:41535601:+	0	+
#Deleted in new
chr19	41535713	41535783	ENSG00000270164.1|LINC01480|lncRNA|chr19:41535713:41535783:+	0	+
#Deleted in new
chr19	41535727	41535783	ENSG00000270164.1|LINC01480|lncRNA|chr19:41535727:41535783:+	0	+
#Deleted in new
chr19	41536597	41536902	ENSG00000270164.1|LINC01480|lncRNA|chr19:41536597:41536902:+	0	+
#Deleted in new
chr19	41536597	41536904	ENSG00000270164.1|LINC01480|lncRNA|chr19:41536597:41536904:+	0	+
#Deleted in new
chr19	41536600	41536904	ENSG00000270164.1|LINC01480|lncRNA|chr19:41536600:41536904:+	0	+
#Deleted in new
chr19	41545191	41545196	ENSG00000268027.5|AC243960.1|lncRNA|chr19:41545191:41545196:+	0	+
#Deleted in new
chr19	41549517	41549552	ENSG00000007129.17|CEACAM21|pc|chr19:41549517:41549552:+	0	+
#Deleted in new
chr19	41549519	41549552	ENSG00000268027.5|AC243960.1|lncRNA|chr19:41549519:41549552:+	0	+
#Deleted in new
chr19	41550137	41550705	ENSG00000268027.5|AC243960.1|lncRNA|chr19:41550137:41550705:+	0	+
#Deleted in new
chr19	41551179	41551302	ENSG00000268027.5|AC243960.1|lncRNA|chr19:41551179:41551302:+	0	+
#Deleted in new
chr19	41551179	41551494	ENSG00000268027.5|AC243960.1|lncRNA|chr19:41551179:41551494:+	0	+
#Deleted in new
chr19	41551567	41552274	ENSG00000280014.1|AC243960.7|lncRNA|chr19:41551567:41552274:-	0	-
#Deleted in new
chr19	41551752	41551828	ENSG00000268027.5|AC243960.1|lncRNA|chr19:41551752:41551828:+	0	+
#Deleted in new
chr19	41553705	41553746	ENSG00000268027.5|AC243960.1|lncRNA|chr19:41553705:41553746:+	0	+
#Deleted in new
chr19	41554950	41555099	ENSG00000268027.5|AC243960.1|lncRNA|chr19:41554950:41555099:+	0	+
#Deleted in new
chr19	41555209	41555251	ENSG00000268027.5|AC243960.1|lncRNA|chr19:41555209:41555251:+	0	+
#Deleted in new
chr19	41555209	41555462	ENSG00000268027.5|AC243960.1|lncRNA|chr19:41555209:41555462:+	0	+
#Deleted in new
chr19	41564681	41565056	ENSG00000007129.17|CEACAM21|pc|chr19:41564681:41565056:+	0	+
#Deleted in new
chr19	41565567	41565608	ENSG00000007129.17|CEACAM21|pc|chr19:41565567:41565608:+	0	+
#Deleted in new
chr19	41673306	41674759	ENSG00000007306.14|CEACAM7|pc|chr19:41673306:41674759:-	0	-
#Deleted in new
chr19	41674442	41674739	ENSG00000007306.14|CEACAM7|pc|chr19:41674442:41674739:-	0	-
#Deleted in new
chr19	41703798	41703914	ENSG00000007306.14|CEACAM7|pc|chr19:41703798:41703914:-	0	-
#Deleted in new
chr19	41706932	41706976	ENSG00000007306.14|CEACAM7|pc|chr19:41706932:41706976:-	0	-
#Duplicated in new
chr19	41719929	41720208	ENSG00000105388.15|CEACAM5|pc|chr19:41719929:41720208:+	0	+
#Deleted in new
chr19	41729183	41729345	ENSG00000105388.15|CEACAM5|pc|chr19:41729183:41729345:+	0	+
#Deleted in new
chr19	41729183	41729798	ENSG00000105388.15|CEACAM5|pc|chr19:41729183:41729798:+	0	+
#Deleted in new
chr19	41729209	41729335	ENSG00000105388.15|CEACAM5|pc|chr19:41729209:41729335:+	0	+
#Partially deleted in new
chr19	41751642	41751748	ENSG00000086548.8|CEACAM6|pc|chr19:41751642:41751748:+	0	+
#Duplicated in new
chr19	41757897	41758081	ENSG00000268833.1|AC243967.2|lncRNA|chr19:41757897:41758081:-	0	-
#Partially deleted in new
chr1	94176612	94177720	ENSG00000137962.12|ARHGAP29|pc|chr1:94176612:94177720:-	0	-
#Deleted in new
chr19	41770801	41772208	ENSG00000086548.8|CEACAM6|pc|chr19:41770801:41772208:+	0	+
#Deleted in new
chr19	41786510	41786893	ENSG00000268833.1|AC243967.2|lncRNA|chr19:41786510:41786893:-	0	-
#Partially deleted in new
chr19	41811223	41811551	ENSG00000170956.16|CEACAM3|pc|chr19:41811223:41811551:+	0	+
#Deleted in new
chr19	4182210	4182279	ENSG00000077463.14|SIRT6|pc|chr19:4182210:4182279:-	0	-
#Deleted in new
chr19	4183353	4183477	ENSG00000089847.12|ANKRD24|pc|chr19:4183353:4183477:+	0	+
#Deleted in new
chr19	41833685	41835950	ENSG00000278239.1|AC243967.3|lncRNA|chr19:41833685:41835950:-	0	-
#Partially deleted in new
chr19	41843577	41844673	ENSG00000273111.5|LYPD4|pc|chr19:41843577:41844673:-	0	-
#Deleted in new
chr19	41863870	41863985	ENSG00000105372.6|RPS19|pc|chr19:41863870:41863985:+	0	+
#Deleted in new
chr19	41864173	41864899	ENSG00000105372.6|RPS19|pc|chr19:41864173:41864899:+	0	+
#Partially deleted in new
chr19	41871350	41872926	ENSG00000105372.6|RPS19|pc|chr19:41871350:41872926:+	0	+
#Partially deleted in new
chr19	418922	419879	ENSG00000129946.10|SHC2|pc|chr19:418922:419879:-	0	-
#Deleted in new
chr19	41900835	41900933	ENSG00000076928.17|ARHGEF1|pc|chr19:41900835:41900933:+	0	+
#Deleted in new
chr19	41929654	41929846	ENSG00000076928.17|ARHGEF1|pc|chr19:41929654:41929846:+	0	+
#Deleted in new
chr19	41929654	41930127	ENSG00000076928.17|ARHGEF1|pc|chr19:41929654:41930127:+	0	+
#Deleted in new
chr19	41929654	41930150	ENSG00000076928.17|ARHGEF1|pc|chr19:41929654:41930150:+	0	+
#Deleted in new
chr19	42001785	42002546	ENSG00000105737.9|GRIK5|pc|chr19:42001785:42002546:-	0	-
#Deleted in new
chr19	42063300	42063525	ENSG00000105737.9|GRIK5|pc|chr19:42063300:42063525:-	0	-
#Deleted in new
chr19	4207107	4207134	ENSG00000089847.12|ANKRD24|pc|chr19:4207107:4207134:+	0	+
#Deleted in new
chr19	42074670	42074790	ENSG00000105732.12|ZNF574|pc|chr19:42074670:42074790:+	0	+
#Deleted in new
chr19	42074904	42075246	ENSG00000105732.12|ZNF574|pc|chr19:42074904:42075246:+	0	+
#Deleted in new
chr19	42110546	42110605	ENSG00000028277.21|POU2F2|pc|chr19:42110546:42110605:-	0	-
#Deleted in new
chr19	42110700	42110756	ENSG00000028277.21|POU2F2|pc|chr19:42110700:42110756:-	0	-
#Deleted in new
chr19	42110705	42110756	ENSG00000028277.21|POU2F2|pc|chr19:42110705:42110756:-	0	-
#Partially deleted in new
chr19	42136671	42137087	ENSG00000254887.1|AC010247.1|lncRNA|chr19:42136671:42137087:+	0	+
#Partially deleted in new
chr19	42136671	42137099	ENSG00000254887.1|AC010247.1|lncRNA|chr19:42136671:42137099:+	0	+
#Deleted in new
chr19	42204461	42204559	ENSG00000160570.13|DEDD2|pc|chr19:42204461:42204559:-	0	-
#Deleted in new
chr19	42211911	42212009	ENSG00000160570.13|DEDD2|pc|chr19:42211911:42212009:-	0	-
#Partially deleted in new
chr19	4224427	4224814	ENSG00000089847.12|ANKRD24|pc|chr19:4224427:4224814:+	0	+
#Partially deleted in new
chr19	42424268	42425204	ENSG00000213904.8|LIPE-AS1|lncRNA|chr19:42424268:42425204:+	0	+
#Partially deleted in new
chr19	42424312	42425142	ENSG00000213904.8|LIPE-AS1|lncRNA|chr19:42424312:42425142:+	0	+
#Partially deleted in new
chr19	42424383	42424536	ENSG00000268605.1|AC011497.1|lncRNA|chr19:42424383:42424536:-	0	-
#Deleted in new
chr19	42424663	42425071	ENSG00000268605.1|AC011497.1|lncRNA|chr19:42424663:42425071:-	0	-
#Deleted in new
chr19	4248014	4248251	ENSG00000105248.15|CCDC94|pc|chr19:4248014:4248251:+	0	+
#Deleted in new
chr19	42515010	42515103	ENSG00000079385.21|CEACAM1|pc|chr19:42515010:42515103:-	0	-
#Deleted in new
chr19	42516772	42516865	ENSG00000079385.21|CEACAM1|pc|chr19:42516772:42516865:-	0	-
#Deleted in new
chr19	42580240	42581353	ENSG00000124469.11|CEACAM8|pc|chr19:42580240:42581353:-	0	-
#Deleted in new
chr19	42651086	42652019	ENSG00000213904.8|LIPE-AS1|lncRNA|chr19:42651086:42652019:+	0	+
#Deleted in new
chr19	42651086	42652355	ENSG00000213904.8|LIPE-AS1|lncRNA|chr19:42651086:42652355:+	0	+
#Partially deleted in new
chr19	4268583	4269090	ENSG00000105248.15|CCDC94|pc|chr19:4268583:4269090:+	0	+
#Partially deleted in new
chr1	9426974	9427381	ENSG00000284693.1|AL928921.2|lncRNA|chr1:9426974:9427381:-	0	-
#Deleted in new
chr19	42721637	42722090	ENSG00000221826.9|PSG3|pc|chr19:42721637:42722090:-	0	-
#Deleted in new
chr19	42721641	42722090	ENSG00000221826.9|PSG3|pc|chr19:42721641:42722090:-	0	-
#Deleted in new
chr19	42721702	42722090	ENSG00000221826.9|PSG3|pc|chr19:42721702:42722090:-	0	-
#Deleted in new
chr19	42734046	42734195	ENSG00000221826.9|PSG3|pc|chr19:42734046:42734195:-	0	-
#Deleted in new
chr19	42752685	42753376	ENSG00000124467.18|PSG8|pc|chr19:42752685:42753376:-	0	-
#Deleted in new
chr19	42752690	42753376	ENSG00000124467.18|PSG8|pc|chr19:42752690:42753376:-	0	-
#Deleted in new
chr19	42752691	42753376	ENSG00000124467.18|PSG8|pc|chr19:42752691:42753376:-	0	-
#Deleted in new
chr19	42752724	42753376	ENSG00000124467.18|PSG8|pc|chr19:42752724:42753376:-	0	-
#Deleted in new
chr19	42752726	42753376	ENSG00000124467.18|PSG8|pc|chr19:42752726:42753376:-	0	-
#Partially deleted in new
chr19	4278600	4280360	ENSG00000105251.10|SHD|pc|chr19:4278600:4280360:+	0	+
#Deleted in new
chr19	42821862	42821913	ENSG00000225877.1|PSG8-AS1|lncRNA|chr19:42821862:42821913:+	0	+
#Deleted in new
chr19	42822812	42823775	ENSG00000225877.1|PSG8-AS1|lncRNA|chr19:42822812:42823775:+	0	+
#Deleted in new
chr19	42824931	42825344	ENSG00000225877.1|PSG8-AS1|lncRNA|chr19:42824931:42825344:+	0	+
#Deleted in new
chr19	42826432	42826878	ENSG00000225877.1|PSG8-AS1|lncRNA|chr19:42826432:42826878:+	0	+
#Deleted in new
chr19	4284430	4284613	ENSG00000105251.10|SHD|pc|chr19:4284430:4284613:+	0	+
#Deleted in new
chr19	42866463	42867150	ENSG00000231924.9|PSG1|pc|chr19:42866463:42867150:-	0	-
#Deleted in new
chr19	42866465	42867064	ENSG00000231924.9|PSG1|pc|chr19:42866465:42867064:-	0	-
#Deleted in new
chr19	42866465	42867150	ENSG00000231924.9|PSG1|pc|chr19:42866465:42867150:-	0	-
#Deleted in new
chr19	42866470	42867064	ENSG00000231924.9|PSG1|pc|chr19:42866470:42867064:-	0	-
#Deleted in new
chr19	42866482	42867150	ENSG00000231924.9|PSG1|pc|chr19:42866482:42867150:-	0	-
#Deleted in new
chr19	42867192	42867745	ENSG00000231924.9|PSG1|pc|chr19:42867192:42867745:-	0	-
#Duplicated in new
chr19	42871766	42872045	ENSG00000231924.9|PSG1|pc|chr19:42871766:42872045:-	0	-
#Deleted in new
chr19	42874101	42874143	ENSG00000231924.9|PSG1|pc|chr19:42874101:42874143:-	0	-
#Deleted in new
chr19	42902078	42902446	ENSG00000170848.15|PSG6|pc|chr19:42902078:42902446:-	0	-
#Deleted in new
chr19	42902085	42902446	ENSG00000170848.15|PSG6|pc|chr19:42902085:42902446:-	0	-
#Deleted in new
chr19	42902120	42902446	ENSG00000170848.15|PSG6|pc|chr19:42902120:42902446:-	0	-
#Deleted in new
chr19	42903615	42903721	ENSG00000170848.15|PSG6|pc|chr19:42903615:42903721:-	0	-
#Duplicated in new
chr19	42906635	42907176	ENSG00000170848.15|PSG6|pc|chr19:42906635:42907176:-	0	-
#Deleted in new
chr19	42918428	42919563	ENSG00000170848.15|PSG6|pc|chr19:42918428:42919563:-	0	-
#Partially deleted in new
chr19	4292231	4292885	ENSG00000167664.8|TMIGD2|pc|chr19:4292231:4292885:-	0	-
#Deleted in new
chr19	42924131	42924824	ENSG00000221878.12|PSG7|pc|chr19:42924131:42924824:-	0	-
#Deleted in new
chr19	42924139	42924824	ENSG00000221878.12|PSG7|pc|chr19:42924139:42924824:-	0	-
#Deleted in new
chr19	42924331	42924824	ENSG00000221878.12|PSG7|pc|chr19:42924331:42924824:-	0	-
#Partially deleted in new
chr19	42924878	42926027	ENSG00000221878.12|PSG7|pc|chr19:42924878:42926027:-	0	-
#Deleted in new
chr19	4294566	4294680	ENSG00000167664.8|TMIGD2|pc|chr19:4294566:4294680:-	0	-
#Deleted in new
chr19	4294578	4294680	ENSG00000167664.8|TMIGD2|pc|chr19:4294578:4294680:-	0	-
#Deleted in new
chr19	4294774	4294816	ENSG00000167664.8|TMIGD2|pc|chr19:4294774:4294816:-	0	-
#Deleted in new
chr19	42977462	42977644	ENSG00000282943.1|AC004784.1|lncRNA|chr19:42977462:42977644:+	0	+
#Deleted in new
chr19	43007655	43008042	ENSG00000243130.7|PSG11|pc|chr19:43007655:43008042:-	0	-
#Deleted in new
chr19	43007657	43008110	ENSG00000243130.7|PSG11|pc|chr19:43007657:43008110:-	0	-
#Deleted in new
chr19	43007829	43008042	ENSG00000243130.7|PSG11|pc|chr19:43007829:43008042:-	0	-
#Deleted in new
chr19	43007899	43008110	ENSG00000243130.7|PSG11|pc|chr19:43007899:43008110:-	0	-
#Deleted in new
chr19	43017230	43017601	ENSG00000243130.7|PSG11|pc|chr19:43017230:43017601:-	0	-
#Deleted in new
chr19	43064210	43064601	ENSG00000242221.8|PSG2|pc|chr19:43064210:43064601:-	0	-
#Deleted in new
chr19	43065488	43065890	ENSG00000242221.8|PSG2|pc|chr19:43065488:43065890:-	0	-
#Deleted in new
chr19	43082951	43083045	ENSG00000242221.8|PSG2|pc|chr19:43082951:43083045:-	0	-
#Deleted in new
chr19	43101560	43101700	ENSG00000282943.1|AC004784.1|lncRNA|chr19:43101560:43101700:+	0	+
#Partially deleted in new
chr19	4310474	4311131	ENSG00000105255.10|FSD1|pc|chr19:4310474:4311131:+	0	+
#Partially deleted in new
chr19	4310474	4311577	ENSG00000105255.10|FSD1|pc|chr19:4310474:4311577:+	0	+
#Deleted in new
chr19	43137516	43137851	ENSG00000282943.1|AC004784.1|lncRNA|chr19:43137516:43137851:+	0	+
#Deleted in new
chr19	43153278	43153611	ENSG00000227606.2|AC005392.1|lncRNA|chr19:43153278:43153611:+	0	+
#Deleted in new
chr19	43155171	43155325	ENSG00000227606.2|AC005392.1|lncRNA|chr19:43155171:43155325:+	0	+
#Deleted in new
chr19	43160849	43160862	ENSG00000227606.2|AC005392.1|lncRNA|chr19:43160849:43160862:+	0	+
#Deleted in new
chr19	43166255	43166842	ENSG00000204941.13|PSG5|pc|chr19:43166255:43166842:-	0	-
#Deleted in new
chr19	43167742	43168135	ENSG00000204941.13|PSG5|pc|chr19:43167742:43168135:-	0	-
#Deleted in new
chr19	43167742	43168203	ENSG00000204941.13|PSG5|pc|chr19:43167742:43168203:-	0	-
#Deleted in new
chr19	43167771	43168135	ENSG00000204941.13|PSG5|pc|chr19:43167771:43168135:-	0	-
#Deleted in new
chr19	43168121	43168203	ENSG00000204941.13|PSG5|pc|chr19:43168121:43168203:-	0	-
#Deleted in new
chr19	43180346	43180596	ENSG00000204941.13|PSG5|pc|chr19:43180346:43180596:-	0	-
#Partially deleted in new
chr1	94318478	94318907	ENSG00000236098.1|AC097059.2|lncRNA|chr1:94318478:94318907:-	0	-
#Deleted in new
chr19	43192701	43193388	ENSG00000243137.7|PSG4|pc|chr19:43192701:43193388:-	0	-
#Deleted in new
chr19	43192703	43193388	ENSG00000243137.7|PSG4|pc|chr19:43192703:43193388:-	0	-
#Deleted in new
chr19	43192737	43193388	ENSG00000243137.7|PSG4|pc|chr19:43192737:43193388:-	0	-
#Deleted in new
chr19	43192750	43193388	ENSG00000243137.7|PSG4|pc|chr19:43192750:43193388:-	0	-
#Deleted in new
chr19	43193605	43193816	ENSG00000243137.7|PSG4|pc|chr19:43193605:43193816:-	0	-
#Deleted in new
chr19	43196457	43196827	ENSG00000243137.7|PSG4|pc|chr19:43196457:43196827:-	0	-
#Deleted in new
chr19	43206168	43207299	ENSG00000243137.7|PSG4|pc|chr19:43206168:43207299:-	0	-
#Deleted in new
chr19	43211790	43212475	ENSG00000183668.17|PSG9|pc|chr19:43211790:43212475:-	0	-
#Deleted in new
chr19	43211791	43212475	ENSG00000183668.17|PSG9|pc|chr19:43211791:43212475:-	0	-
#Deleted in new
chr19	4324609	4324667	ENSG00000178078.11|STAP2|pc|chr19:4324609:4324667:-	0	-
#Deleted in new
chr19	43253278	43253646	ENSG00000183668.17|PSG9|pc|chr19:43253278:43253646:-	0	-
#Deleted in new
chr19	43253281	43253646	ENSG00000183668.17|PSG9|pc|chr19:43253281:43253646:-	0	-
#Deleted in new
chr19	43253282	43253646	ENSG00000183668.17|PSG9|pc|chr19:43253282:43253646:-	0	-
#Deleted in new
chr19	43253286	43253646	ENSG00000183668.17|PSG9|pc|chr19:43253286:43253646:-	0	-
#Duplicated in new
chr19	43257159	43258456	ENSG00000183668.17|PSG9|pc|chr19:43257159:43258456:-	0	-
#Duplicated in new
chr19	43257164	43258456	ENSG00000183668.17|PSG9|pc|chr19:43257164:43258456:-	0	-
#Deleted in new
chr19	4328183	4328226	ENSG00000178078.11|STAP2|pc|chr19:4328183:4328226:-	0	-
#Deleted in new
chr19	43329294	43329508	ENSG00000231412.2|AC005392.2|lncRNA|chr19:43329294:43329508:-	0	-
#Deleted in new
chr1	94333308	94333409	ENSG00000226835.2|AC097059.1|lncRNA|chr1:94333308:94333409:+	0	+
#Deleted in new
chr19	43368828	43368970	ENSG00000272396.1|AC005392.3|lncRNA|chr19:43368828:43368970:-	0	-
#Deleted in new
chr19	4339576	4339619	ENSG00000269425.1|AC104521.1|lncRNA|chr19:4339576:4339619:+	0	+
#Deleted in new
chr19	43402765	43402859	ENSG00000131126.18|TEX101|pc|chr19:43402765:43402859:+	0	+
#Deleted in new
chr19	43406222	43406519	ENSG00000131126.18|TEX101|pc|chr19:43406222:43406519:+	0	+
#Deleted in new
chr19	43414887	43414952	ENSG00000131126.18|TEX101|pc|chr19:43414887:43414952:+	0	+
#Partially deleted in new
chr19	43414911	43415038	ENSG00000131126.18|TEX101|pc|chr19:43414911:43415038:+	0	+
#Deleted in new
chr19	4342420	4342786	ENSG00000178078.11|STAP2|pc|chr19:4342420:4342786:-	0	-
#Deleted in new
chr19	4347243	4347354	ENSG00000269807.1|AC007292.3|lncRNA|chr19:4347243:4347354:-	0	-
#Partially deleted in new
chr19	43496017	43497279	ENSG00000176531.10|PHLDB3|pc|chr19:43496017:43497279:-	0	-
#Deleted in new
chr19	43531804	43531880	ENSG00000176472.10|ZNF575|pc|chr19:43531804:43531880:+	0	+
#Partially deleted in new
chr19	4353811	4354057	ENSG00000269807.1|AC007292.3|lncRNA|chr19:4353811:4354057:-	0	-
#Deleted in new
chr19	435778	435961	ENSG00000129946.10|SHC2|pc|chr19:435778:435961:-	0	-
#Deleted in new
chr19	43580364	43580434	ENSG00000073050.11|XRCC1|pc|chr19:43580364:43580434:-	0	-
#Deleted in new
chr19	43580364	43580473	ENSG00000073050.11|XRCC1|pc|chr19:43580364:43580473:-	0	-
#Deleted in new
chr19	43580543	43580587	ENSG00000234465.10|PINLYP|pc|chr19:43580543:43580587:+	0	+
#Deleted in new
chr19	43580637	43580669	ENSG00000234465.10|PINLYP|pc|chr19:43580637:43580669:+	0	+
#Partially deleted in new
chr19	43584368	43593367	ENSG00000167378.8|IRGQ|pc|chr19:43584368:43593367:-	0	-
#Partially deleted in new
chr19	43585935	43589687	ENSG00000167378.8|IRGQ|pc|chr19:43585935:43589687:-	0	-
#Partially deleted in new
chr19	43586276	43586520	ENSG00000167378.8|IRGQ|pc|chr19:43586276:43586520:-	0	-
#Deleted in new
chr19	43608504	43608603	ENSG00000131116.11|ZNF428|pc|chr19:43608504:43608603:-	0	-
#Deleted in new
chr19	43624835	43624903	ENSG00000105767.2|CADM4|pc|chr19:43624835:43624903:-	0	-
#Partially deleted in new
chr19	4364117	4364640	ENSG00000267980.1|AC007292.1|lncRNA|chr19:4364117:4364640:+	0	+
#Deleted in new
chr19	43646094	43646548	ENSG00000011422.11|PLAUR|pc|chr19:43646094:43646548:-	0	-
#Deleted in new
chr19	43660973	43661442	ENSG00000011422.11|PLAUR|pc|chr19:43660973:43661442:-	0	-
#Deleted in new
chr19	43660973	43661548	ENSG00000011422.11|PLAUR|pc|chr19:43660973:43661548:-	0	-
#Partially deleted in new
chr19	43667214	43667691	ENSG00000011422.11|PLAUR|pc|chr19:43667214:43667691:-	0	-
#Partially deleted in new
chr19	43727991	43731674	ENSG00000105771.13|SMG9|pc|chr19:43727991:43731674:-	0	-
#Partially deleted in new
chr19	43754375	43754598	ENSG00000105771.13|SMG9|pc|chr19:43754375:43754598:-	0	-
#Partially deleted in new
chr19	43754377	43754601	ENSG00000105771.13|SMG9|pc|chr19:43754377:43754601:-	0	-
#Deleted in new
chr19	43794308	43794617	ENSG00000268601.1|AC115522.1|lncRNA|chr19:43794308:43794617:-	0	-
#Deleted in new
chr19	43795411	43795658	ENSG00000268601.1|AC115522.1|lncRNA|chr19:43795411:43795658:-	0	-
#Partially deleted in new
chr19	43795928	43797829	ENSG00000159871.14|LYPD5|pc|chr19:43795928:43797829:-	0	-
#Partially deleted in new
chr19	43796240	43797829	ENSG00000159871.14|LYPD5|pc|chr19:43796240:43797829:-	0	-
#Deleted in new
chr19	4380161	4380292	ENSG00000141985.9|SH3GL1|pc|chr19:4380161:4380292:-	0	-
#Deleted in new
chr19	43820477	43820598	ENSG00000159871.14|LYPD5|pc|chr19:43820477:43820598:-	0	-
#Deleted in new
chr19	43820539	43820634	ENSG00000159871.14|LYPD5|pc|chr19:43820539:43820634:-	0	-
#Deleted in new
chr19	43822056	43823914	ENSG00000159871.14|LYPD5|pc|chr19:43822056:43823914:-	0	-
#Deleted in new
chr19	43826998	43827199	ENSG00000159871.14|LYPD5|pc|chr19:43826998:43827199:-	0	-
#Deleted in new
chr19	43826998	43827206	ENSG00000159871.14|LYPD5|pc|chr19:43826998:43827206:-	0	-
#Deleted in new
chr19	43827291	43827444	ENSG00000167637.16|ZNF283|pc|chr19:43827291:43827444:+	0	+
#Deleted in new
chr19	43827354	43827444	ENSG00000167637.16|ZNF283|pc|chr19:43827354:43827444:+	0	+
#Deleted in new
chr19	43827373	43827444	ENSG00000167637.16|ZNF283|pc|chr19:43827373:43827444:+	0	+
#Deleted in new
chr19	43827394	43827444	ENSG00000167637.16|ZNF283|pc|chr19:43827394:43827444:+	0	+
#Deleted in new
chr19	43827423	43827444	ENSG00000167637.16|ZNF283|pc|chr19:43827423:43827444:+	0	+
#Deleted in new
chr19	43827775	43827940	ENSG00000167637.16|ZNF283|pc|chr19:43827775:43827940:+	0	+
#Deleted in new
chr19	43828195	43828281	ENSG00000167637.16|ZNF283|pc|chr19:43828195:43828281:+	0	+
#Deleted in new
chr19	43828198	43828281	ENSG00000167637.16|ZNF283|pc|chr19:43828198:43828281:+	0	+
#Deleted in new
chr19	43828201	43828281	ENSG00000167637.16|ZNF283|pc|chr19:43828201:43828281:+	0	+
#Deleted in new
chr19	43831317	43831381	ENSG00000167637.16|ZNF283|pc|chr19:43831317:43831381:+	0	+
#Deleted in new
chr19	43833504	43833626	ENSG00000167637.16|ZNF283|pc|chr19:43833504:43833626:+	0	+
#Deleted in new
chr19	43833504	43833852	ENSG00000167637.16|ZNF283|pc|chr19:43833504:43833852:+	0	+
#Deleted in new
chr19	43835504	43835592	ENSG00000167637.16|ZNF283|pc|chr19:43835504:43835592:+	0	+
#Partially deleted in new
chr19	43837052	43838080	ENSG00000167637.16|ZNF283|pc|chr19:43837052:43838080:+	0	+
#Deleted in new
chr19	43837229	43837272	ENSG00000167637.16|ZNF283|pc|chr19:43837229:43837272:+	0	+
#Deleted in new
chr19	43840706	43840775	ENSG00000167637.16|ZNF283|pc|chr19:43840706:43840775:+	0	+
#Deleted in new
chr19	43840885	43841018	ENSG00000167637.16|ZNF283|pc|chr19:43840885:43841018:+	0	+
#Deleted in new
chr19	43841459	43841475	ENSG00000167637.16|ZNF283|pc|chr19:43841459:43841475:+	0	+
#Split in new
chr19	43846938	43852017	ENSG00000167637.16|ZNF283|pc|chr19:43846938:43852017:+	0	+
#Deleted in new
chr19	43881639	43881738	ENSG00000176222.8|ZNF404|pc|chr19:43881639:43881738:-	0	-
#Deleted in new
chr19	43883955	43883964	ENSG00000176222.8|ZNF404|pc|chr19:43883955:43883964:-	0	-
#Deleted in new
chr19	43883955	43884051	ENSG00000176222.8|ZNF404|pc|chr19:43883955:43884051:-	0	-
#Deleted in new
chr19	43891232	43895411	ENSG00000278917.1|AC006213.6|lncRNA|chr19:43891232:43895411:+	0	+
#Deleted in new
chr19	43891803	43893140	ENSG00000267058.1|AC006213.2|lncRNA|chr19:43891803:43893140:-	0	-
#Deleted in new
chr19	4390051	4390610	ENSG00000141985.9|SH3GL1|pc|chr19:4390051:4390610:-	0	-
#Deleted in new
chr19	43900867	43900954	ENSG00000176222.8|ZNF404|pc|chr19:43900867:43900954:-	0	-
#Deleted in new
chr19	43900867	43900954	ENSG00000267058.1|AC006213.2|lncRNA|chr19:43900867:43900954:-	0	-
#Deleted in new
chr19	43900917	43900954	ENSG00000267058.1|AC006213.2|lncRNA|chr19:43900917:43900954:-	0	-
#Deleted in new
chr19	43901036	43901385	ENSG00000176222.8|ZNF404|pc|chr19:43901036:43901385:-	0	-
#Deleted in new
chr19	43901036	43901805	ENSG00000267058.1|AC006213.2|lncRNA|chr19:43901036:43901805:-	0	-
#Deleted in new
chr19	43901044	43901511	ENSG00000267058.1|AC006213.2|lncRNA|chr19:43901044:43901511:-	0	-
#Deleted in new
chr19	43902000	43902144	ENSG00000267191.1|AC006213.3|lncRNA|chr19:43902000:43902144:+	0	+
#Deleted in new
chr19	439232	439267	ENSG00000129946.10|SHC2|pc|chr19:439232:439267:-	0	-
#Deleted in new
chr19	439232	439491	ENSG00000129946.10|SHC2|pc|chr19:439232:439491:-	0	-
#Deleted in new
chr19	43924237	43924310	ENSG00000124459.11|ZNF45|pc|chr19:43924237:43924310:-	0	-
#Deleted in new
chr19	43924237	43924312	ENSG00000124459.11|ZNF45|pc|chr19:43924237:43924312:-	0	-
#Deleted in new
chr19	43924401	43924561	ENSG00000124459.11|ZNF45|pc|chr19:43924401:43924561:-	0	-
#Deleted in new
chr19	43925141	43925254	ENSG00000267191.1|AC006213.3|lncRNA|chr19:43925141:43925254:+	0	+
#Deleted in new
chr19	43925324	43925458	ENSG00000124459.11|ZNF45|pc|chr19:43925324:43925458:-	0	-
#Deleted in new
chr19	43926285	43926545	ENSG00000267191.1|AC006213.3|lncRNA|chr19:43926285:43926545:+	0	+
#Deleted in new
chr19	43929956	43930000	ENSG00000124459.11|ZNF45|pc|chr19:43929956:43930000:-	0	-
#Deleted in new
chr19	43931246	43931365	ENSG00000124459.11|ZNF45|pc|chr19:43931246:43931365:-	0	-
#Deleted in new
chr19	43932402	43932690	ENSG00000124459.11|ZNF45|pc|chr19:43932402:43932690:-	0	-
#Deleted in new
chr19	43932603	43932690	ENSG00000124459.11|ZNF45|pc|chr19:43932603:43932690:-	0	-
#Deleted in new
chr19	43934425	43934542	ENSG00000124459.11|ZNF45|pc|chr19:43934425:43934542:-	0	-
#Deleted in new
chr19	43934425	43934694	ENSG00000124459.11|ZNF45|pc|chr19:43934425:43934694:-	0	-
#Deleted in new
chr19	43934923	43935259	ENSG00000124459.11|ZNF45|pc|chr19:43934923:43935259:-	0	-
#Deleted in new
chr19	43935229	43935278	ENSG00000124459.11|ZNF45|pc|chr19:43935229:43935278:-	0	-
#Deleted in new
chr19	43951222	43951400	ENSG00000159905.14|ZNF221|pc|chr19:43951222:43951400:+	0	+
#Deleted in new
chr19	43951222	43951410	ENSG00000159905.14|ZNF221|pc|chr19:43951222:43951410:+	0	+
#Deleted in new
chr19	43951244	43951400	ENSG00000159905.14|ZNF221|pc|chr19:43951244:43951400:+	0	+
#Partially deleted in new
chr19	4395544	4396023	ENSG00000141985.9|SH3GL1|pc|chr19:4395544:4396023:-	0	-
#Deleted in new
chr19	43960186	43960356	ENSG00000159905.14|ZNF221|pc|chr19:43960186:43960356:+	0	+
#Deleted in new
chr19	43960275	43960356	ENSG00000159905.14|ZNF221|pc|chr19:43960275:43960356:+	0	+
#Deleted in new
chr19	43961823	43961971	ENSG00000159905.14|ZNF221|pc|chr19:43961823:43961971:+	0	+
#Deleted in new
chr19	43962722	43962807	ENSG00000159905.14|ZNF221|pc|chr19:43962722:43962807:+	0	+
#Deleted in new
chr19	43962724	43962807	ENSG00000159905.14|ZNF221|pc|chr19:43962724:43962807:+	0	+
#Deleted in new
chr19	43976814	43977448	ENSG00000277806.1|AC006213.4|lncRNA|chr19:43976814:43977448:+	0	+
#Deleted in new
chr19	43978375	43978663	ENSG00000278492.1|AC006213.5|lncRNA|chr19:43978375:43978663:+	0	+
#Deleted in new
chr19	43984169	43984348	ENSG00000204920.10|ZNF155|pc|chr19:43984169:43984348:+	0	+
#Deleted in new
chr19	43984187	43984245	ENSG00000204920.10|ZNF155|pc|chr19:43984187:43984245:+	0	+
#Deleted in new
chr19	43984190	43984231	ENSG00000204920.10|ZNF155|pc|chr19:43984190:43984231:+	0	+
#Deleted in new
chr19	43984193	43984245	ENSG00000204920.10|ZNF155|pc|chr19:43984193:43984245:+	0	+
#Deleted in new
chr19	43984202	43984245	ENSG00000204920.10|ZNF155|pc|chr19:43984202:43984245:+	0	+
#Deleted in new
chr19	43984216	43984322	ENSG00000204920.10|ZNF155|pc|chr19:43984216:43984322:+	0	+
#Deleted in new
chr19	43984218	43984322	ENSG00000204920.10|ZNF155|pc|chr19:43984218:43984322:+	0	+
#Deleted in new
chr19	43984220	43984348	ENSG00000204920.10|ZNF155|pc|chr19:43984220:43984348:+	0	+
#Deleted in new
chr19	43988458	43988558	ENSG00000204920.10|ZNF155|pc|chr19:43988458:43988558:+	0	+
#Deleted in new
chr19	43988458	43988943	ENSG00000204920.10|ZNF155|pc|chr19:43988458:43988943:+	0	+
#Deleted in new
chr19	43988458	43988968	ENSG00000204920.10|ZNF155|pc|chr19:43988458:43988968:+	0	+
#Deleted in new
chr19	43990023	43990112	ENSG00000204920.10|ZNF155|pc|chr19:43990023:43990112:+	0	+
#Split in new
chr19	43996895	43999232	ENSG00000266921.1|AC006213.1|lncRNA|chr19:43996895:43999232:-	0	-
#Deleted in new
chr19	43998522	43999232	ENSG00000266921.1|AC006213.1|lncRNA|chr19:43998522:43999232:-	0	-
#Deleted in new
chr19	44002264	44002833	ENSG00000266921.1|AC006213.1|lncRNA|chr19:44002264:44002833:-	0	-
#Deleted in new
chr19	44002623	44002836	ENSG00000266921.1|AC006213.1|lncRNA|chr19:44002623:44002836:-	0	-
#Deleted in new
chr19	44002947	44003107	ENSG00000159882.12|ZNF230|pc|chr19:44002947:44003107:+	0	+
#Deleted in new
chr19	44002958	44004752	ENSG00000159882.12|ZNF230|pc|chr19:44002958:44004752:+	0	+
#Deleted in new
chr19	44002975	44003107	ENSG00000159882.12|ZNF230|pc|chr19:44002975:44003107:+	0	+
#Deleted in new
chr19	44002977	44003107	ENSG00000159882.12|ZNF230|pc|chr19:44002977:44003107:+	0	+
#Deleted in new
chr19	44006699	44007093	ENSG00000159882.12|ZNF230|pc|chr19:44006699:44007093:+	0	+
#Deleted in new
chr19	44007010	44007093	ENSG00000159882.12|ZNF230|pc|chr19:44007010:44007093:+	0	+
#Deleted in new
chr19	44009083	44009162	ENSG00000159882.12|ZNF230|pc|chr19:44009083:44009162:+	0	+
#Deleted in new
chr19	44009083	44009170	ENSG00000159882.12|ZNF230|pc|chr19:44009083:44009170:+	0	+
#Deleted in new
chr19	44009083	44009322	ENSG00000159882.12|ZNF230|pc|chr19:44009083:44009322:+	0	+
#Split in new
chr19	44010268	44013849	ENSG00000159882.12|ZNF230|pc|chr19:44010268:44013849:+	0	+
#Split in new
chr19	44010268	44013926	ENSG00000159882.12|ZNF230|pc|chr19:44010268:44013926:+	0	+
#Deleted in new
chr19	44023603	44023899	ENSG00000267144.1|AC067968.2|lncRNA|chr19:44023603:44023899:-	0	-
#Deleted in new
chr19	44024897	44025019	ENSG00000267144.1|AC067968.2|lncRNA|chr19:44024897:44025019:-	0	-
#Deleted in new
chr19	44025114	44025262	ENSG00000267144.1|AC067968.2|lncRNA|chr19:44025114:44025262:-	0	-
#Deleted in new
chr19	44025341	44025478	ENSG00000159885.13|ZNF222|pc|chr19:44025341:44025478:+	0	+
#Deleted in new
chr19	44025353	44025478	ENSG00000159885.13|ZNF222|pc|chr19:44025353:44025478:+	0	+
#Deleted in new
chr19	44025353	44025478	ENSG00000267022.1|AC067968.1|pc|chr19:44025353:44025478:+	0	+
#Deleted in new
chr19	44025362	44025478	ENSG00000159885.13|ZNF222|pc|chr19:44025362:44025478:+	0	+
#Deleted in new
chr19	44025399	44025478	ENSG00000159885.13|ZNF222|pc|chr19:44025399:44025478:+	0	+
#Deleted in new
chr19	44026025	44026086	ENSG00000159885.13|ZNF222|pc|chr19:44026025:44026086:+	0	+
#Deleted in new
chr19	44028206	44028386	ENSG00000159885.13|ZNF222|pc|chr19:44028206:44028386:+	0	+
#Deleted in new
chr19	44030939	44031048	ENSG00000159885.13|ZNF222|pc|chr19:44030939:44031048:+	0	+
#Deleted in new
chr1	9440458	9440564	ENSG00000284693.1|AL928921.2|lncRNA|chr1:9440458:9440564:-	0	-
#Deleted in new
chr19	44051366	44051801	ENSG00000178386.12|ZNF223|pc|chr19:44051366:44051801:+	0	+
#Deleted in new
chr19	44052008	44052195	ENSG00000178386.12|ZNF223|pc|chr19:44052008:44052195:+	0	+
#Deleted in new
chr19	44052040	44052195	ENSG00000178386.12|ZNF223|pc|chr19:44052040:44052195:+	0	+
#Deleted in new
chr19	44052061	44052195	ENSG00000178386.12|ZNF223|pc|chr19:44052061:44052195:+	0	+
#Deleted in new
chr19	44055108	44055191	ENSG00000178386.12|ZNF223|pc|chr19:44055108:44055191:+	0	+
#Deleted in new
chr19	44055108	44055191	ENSG00000267022.1|AC067968.1|pc|chr19:44055108:44055191:+	0	+
#Deleted in new
chr19	44063264	44063566	ENSG00000178386.12|ZNF223|pc|chr19:44063264:44063566:+	0	+
#Deleted in new
chr19	44072143	44072291	ENSG00000186026.6|ZNF284|pc|chr19:44072143:44072291:+	0	+
#Deleted in new
chr19	44076321	44076404	ENSG00000186026.6|ZNF284|pc|chr19:44076321:44076404:+	0	+
#Deleted in new
chr19	44076321	44076404	ENSG00000267022.1|AC067968.1|pc|chr19:44076321:44076404:+	0	+
#Deleted in new
chr19	44082012	44082105	ENSG00000186026.6|ZNF284|pc|chr19:44082012:44082105:+	0	+
#Deleted in new
chr19	44082012	44082105	ENSG00000267022.1|AC067968.1|pc|chr19:44082012:44082105:+	0	+
#Deleted in new
chr19	44094338	44094530	ENSG00000267680.5|ZNF224|pc|chr19:44094338:44094530:+	0	+
#Deleted in new
chr19	44094386	44094488	ENSG00000267680.5|ZNF224|pc|chr19:44094386:44094488:+	0	+
#Deleted in new
chr19	44094389	44095941	ENSG00000267680.5|ZNF224|pc|chr19:44094389:44095941:+	0	+
#Deleted in new
chr19	44094391	44094488	ENSG00000267680.5|ZNF224|pc|chr19:44094391:44094488:+	0	+
#Deleted in new
chr19	44094784	44095158	ENSG00000267680.5|ZNF224|pc|chr19:44094784:44095158:+	0	+
#Deleted in new
chr19	44096045	44096431	ENSG00000267680.5|ZNF224|pc|chr19:44096045:44096431:+	0	+
#Deleted in new
chr19	44096342	44096431	ENSG00000267680.5|ZNF224|pc|chr19:44096342:44096431:+	0	+
#Deleted in new
chr19	44097708	44097888	ENSG00000267680.5|ZNF224|pc|chr19:44097708:44097888:+	0	+
#Deleted in new
chr19	44097805	44097852	ENSG00000267680.5|ZNF224|pc|chr19:44097805:44097852:+	0	+
#Deleted in new
chr19	44097805	44097888	ENSG00000267680.5|ZNF224|pc|chr19:44097805:44097888:+	0	+
#Deleted in new
chr19	44111950	44112239	ENSG00000186019.10|AC021092.1|lncRNA|chr19:44111950:44112239:-	0	-
#Deleted in new
chr19	44112180	44112297	ENSG00000256294.7|ZNF225|pc|chr19:44112180:44112297:+	0	+
#Deleted in new
chr19	44112821	44112956	ENSG00000186019.10|AC021092.1|lncRNA|chr19:44112821:44112956:-	0	-
#Deleted in new
chr19	44112821	44113145	ENSG00000186019.10|AC021092.1|lncRNA|chr19:44112821:44113145:-	0	-
#Deleted in new
chr19	44113357	44113569	ENSG00000256294.7|ZNF225|pc|chr19:44113357:44113569:+	0	+
#Deleted in new
chr19	44113414	44113569	ENSG00000256294.7|ZNF225|pc|chr19:44113414:44113569:+	0	+
#Deleted in new
chr19	44113416	44113569	ENSG00000256294.7|ZNF225|pc|chr19:44113416:44113569:+	0	+
#Deleted in new
chr19	44114048	44114213	ENSG00000256294.7|ZNF225|pc|chr19:44114048:44114213:+	0	+
#Deleted in new
chr19	44115544	44115842	ENSG00000256294.7|ZNF225|pc|chr19:44115544:44115842:+	0	+
#Deleted in new
chr19	44115759	44115842	ENSG00000256294.7|ZNF225|pc|chr19:44115759:44115842:+	0	+
#Deleted in new
chr19	44118481	44118492	ENSG00000256294.7|ZNF225|pc|chr19:44118481:44118492:+	0	+
#Deleted in new
chr19	44118481	44118574	ENSG00000256294.7|ZNF225|pc|chr19:44118481:44118574:+	0	+
#Deleted in new
chr19	44128453	44130700	ENSG00000256294.7|ZNF225|pc|chr19:44128453:44130700:+	0	+
#Deleted in new
chr19	44129041	44129098	ENSG00000256294.7|ZNF225|pc|chr19:44129041:44129098:+	0	+
#Deleted in new
chr19	44141556	44141615	ENSG00000263002.7|ZNF234|pc|chr19:44141556:44141615:+	0	+
#Deleted in new
chr19	44141605	44141733	ENSG00000263002.7|ZNF234|pc|chr19:44141605:44141733:+	0	+
#Deleted in new
chr19	44141641	44141733	ENSG00000263002.7|ZNF234|pc|chr19:44141641:44141733:+	0	+
#Deleted in new
chr19	44141909	44142367	ENSG00000263002.7|ZNF234|pc|chr19:44141909:44142367:+	0	+
#Deleted in new
chr19	44142313	44142367	ENSG00000263002.7|ZNF234|pc|chr19:44142313:44142367:+	0	+
#Deleted in new
chr19	44144556	44144647	ENSG00000263002.7|ZNF234|pc|chr19:44144556:44144647:+	0	+
#Deleted in new
chr19	44149770	44149976	ENSG00000263002.7|ZNF234|pc|chr19:44149770:44149976:+	0	+
#Deleted in new
chr19	44165072	44165142	ENSG00000167380.16|ZNF226|pc|chr19:44165072:44165142:+	0	+
#Deleted in new
chr19	44165083	44165142	ENSG00000167380.16|ZNF226|pc|chr19:44165083:44165142:+	0	+
#Deleted in new
chr19	44165095	44165142	ENSG00000167380.16|ZNF226|pc|chr19:44165095:44165142:+	0	+
#Deleted in new
chr19	44165096	44165142	ENSG00000167380.16|ZNF226|pc|chr19:44165096:44165142:+	0	+
#Deleted in new
chr19	44165100	44165142	ENSG00000167380.16|ZNF226|pc|chr19:44165100:44165142:+	0	+
#Deleted in new
chr19	44165102	44165142	ENSG00000167380.16|ZNF226|pc|chr19:44165102:44165142:+	0	+
#Deleted in new
chr19	44165103	44165142	ENSG00000167380.16|ZNF226|pc|chr19:44165103:44165142:+	0	+
#Deleted in new
chr19	44165106	44165142	ENSG00000167380.16|ZNF226|pc|chr19:44165106:44165142:+	0	+
#Deleted in new
chr19	44165108	44165142	ENSG00000167380.16|ZNF226|pc|chr19:44165108:44165142:+	0	+
#Deleted in new
chr19	44165111	44165142	ENSG00000167380.16|ZNF226|pc|chr19:44165111:44165142:+	0	+
#Deleted in new
chr19	44165115	44165142	ENSG00000167380.16|ZNF226|pc|chr19:44165115:44165142:+	0	+
#Deleted in new
chr19	44165154	44165246	ENSG00000167380.16|ZNF226|pc|chr19:44165154:44165246:+	0	+
#Deleted in new
chr19	44165163	44165246	ENSG00000167380.16|ZNF226|pc|chr19:44165163:44165246:+	0	+
#Deleted in new
chr19	44165587	44165613	ENSG00000167380.16|ZNF226|pc|chr19:44165587:44165613:+	0	+
#Deleted in new
chr19	44165587	44165807	ENSG00000167380.16|ZNF226|pc|chr19:44165587:44165807:+	0	+
#Deleted in new
chr19	44165755	44165807	ENSG00000167380.16|ZNF226|pc|chr19:44165755:44165807:+	0	+
#Deleted in new
chr19	44165756	44165807	ENSG00000167380.16|ZNF226|pc|chr19:44165756:44165807:+	0	+
#Deleted in new
chr19	44166704	44166882	ENSG00000167380.16|ZNF226|pc|chr19:44166704:44166882:+	0	+
#Deleted in new
chr19	44167818	44167860	ENSG00000167380.16|ZNF226|pc|chr19:44167818:44167860:+	0	+
#Deleted in new
chr19	44169564	44169628	ENSG00000167380.16|ZNF226|pc|chr19:44169564:44169628:+	0	+
#Deleted in new
chr19	44170032	44170095	ENSG00000167380.16|ZNF226|pc|chr19:44170032:44170095:+	0	+
#Deleted in new
chr19	44170034	44170095	ENSG00000167380.16|ZNF226|pc|chr19:44170034:44170095:+	0	+
#Deleted in new
chr19	44170039	44170095	ENSG00000167380.16|ZNF226|pc|chr19:44170039:44170095:+	0	+
#Split in new
chr19	44172087	44172758	ENSG00000167380.16|ZNF226|pc|chr19:44172087:44172758:+	0	+
#Deleted in new
chr19	44174983	44175033	ENSG00000167380.16|ZNF226|pc|chr19:44174983:44175033:+	0	+
#Deleted in new
chr19	44174983	44175158	ENSG00000167380.16|ZNF226|pc|chr19:44174983:44175158:+	0	+
#Deleted in new
chr19	44207546	44207883	ENSG00000131115.15|ZNF227|pc|chr19:44207546:44207883:+	0	+
#Deleted in new
chr19	44212527	44212585	ENSG00000131115.15|ZNF227|pc|chr19:44212527:44212585:+	0	+
#Deleted in new
chr19	44212537	44212585	ENSG00000131115.15|ZNF227|pc|chr19:44212537:44212585:+	0	+
#Deleted in new
chr19	44212564	44212585	ENSG00000131115.15|ZNF227|pc|chr19:44212564:44212585:+	0	+
#Deleted in new
chr19	44212567	44212585	ENSG00000131115.15|ZNF227|pc|chr19:44212567:44212585:+	0	+
#Deleted in new
chr19	44212570	44212585	ENSG00000131115.15|ZNF227|pc|chr19:44212570:44212585:+	0	+
#Deleted in new
chr19	44212574	44212585	ENSG00000131115.15|ZNF227|pc|chr19:44212574:44212585:+	0	+
#Deleted in new
chr19	44212622	44212763	ENSG00000131115.15|ZNF227|pc|chr19:44212622:44212763:+	0	+
#Deleted in new
chr19	44213068	44213244	ENSG00000131115.15|ZNF227|pc|chr19:44213068:44213244:+	0	+
#Deleted in new
chr19	44213086	44213244	ENSG00000131115.15|ZNF227|pc|chr19:44213086:44213244:+	0	+
#Deleted in new
chr19	44213089	44213237	ENSG00000131115.15|ZNF227|pc|chr19:44213089:44213237:+	0	+
#Deleted in new
chr19	44213089	44213244	ENSG00000131115.15|ZNF227|pc|chr19:44213089:44213244:+	0	+
#Deleted in new
chr19	44213089	44213754	ENSG00000131115.15|ZNF227|pc|chr19:44213089:44213754:+	0	+
#Deleted in new
chr19	44217790	44217852	ENSG00000131115.15|ZNF227|pc|chr19:44217790:44217852:+	0	+
#Deleted in new
chr19	44227124	44227340	ENSG00000131115.15|ZNF227|pc|chr19:44227124:44227340:+	0	+
#Partially deleted in new
chr19	44228445	44229118	ENSG00000131115.15|ZNF227|pc|chr19:44228445:44229118:+	0	+
#Deleted in new
chr19	44228728	44228963	ENSG00000159917.15|ZNF235|pc|chr19:44228728:44228963:-	0	-
#Deleted in new
chr19	44246477	44248374	ENSG00000279103.1|AC138470.1|lncRNA|chr19:44246477:44248374:-	0	-
#Deleted in new
chr19	44259879	44259938	ENSG00000159915.12|ZNF233|pc|chr19:44259879:44259938:+	0	+
#Deleted in new
chr19	44259885	44259938	ENSG00000159915.12|ZNF233|pc|chr19:44259885:44259938:+	0	+
#Deleted in new
chr19	44259904	44260208	ENSG00000159915.12|ZNF233|pc|chr19:44259904:44260208:+	0	+
#Deleted in new
chr19	44259922	44260002	ENSG00000159915.12|ZNF233|pc|chr19:44259922:44260002:+	0	+
#Deleted in new
chr19	44267379	44268213	ENSG00000159915.12|ZNF233|pc|chr19:44267379:44268213:+	0	+
#Deleted in new
chr19	44304700	44304968	ENSG00000159917.15|ZNF235|pc|chr19:44304700:44304968:-	0	-
#Deleted in new
chr19	4430816	4430934	ENSG00000267255.1|AC011498.3|lncRNA|chr19:4430816:4430934:-	0	-
#Deleted in new
chr19	4431054	4431114	ENSG00000167670.15|CHAF1A|pc|chr19:4431054:4431114:+	0	+
#Deleted in new
chr19	44367080	44367205	ENSG00000062370.16|ZNF112|pc|chr19:44367080:44367205:-	0	-
#Deleted in new
chr19	44367080	44367217	ENSG00000062370.16|ZNF112|pc|chr19:44367080:44367217:-	0	-
#Split in new
chr19	44382297	44388102	ENSG00000267508.5|ZNF285|pc|chr19:44382297:44388102:-	0	-
#Deleted in new
chr19	44394519	44394540	ENSG00000267508.5|ZNF285|pc|chr19:44394519:44394540:-	0	-
#Deleted in new
chr19	44396663	44397256	ENSG00000267508.5|ZNF285|pc|chr19:44396663:44397256:-	0	-
#Deleted in new
chr19	44397198	44397256	ENSG00000267173.1|AC245748.1|pc|chr19:44397198:44397256:-	0	-
#Deleted in new
chr19	44397198	44397256	ENSG00000267188.1|AC245748.2|lncRNA|chr19:44397198:44397256:-	0	-
#Deleted in new
chr19	44397198	44397256	ENSG00000267508.5|ZNF285|pc|chr19:44397198:44397256:-	0	-
#Deleted in new
chr19	44401422	44401576	ENSG00000267508.5|ZNF285|pc|chr19:44401422:44401576:-	0	-
#Deleted in new
chr19	44401567	44401575	ENSG00000267508.5|ZNF285|pc|chr19:44401567:44401575:-	0	-
#Deleted in new
chr19	44401567	44401589	ENSG00000267508.5|ZNF285|pc|chr19:44401567:44401589:-	0	-
#Deleted in new
chr19	44401567	44401601	ENSG00000267508.5|ZNF285|pc|chr19:44401567:44401601:-	0	-
#Deleted in new
chr19	44401567	44401608	ENSG00000267173.1|AC245748.1|pc|chr19:44401567:44401608:-	0	-
#Deleted in new
chr19	44401567	44401608	ENSG00000267508.5|ZNF285|pc|chr19:44401567:44401608:-	0	-
#Deleted in new
chr19	44417518	44417546	ENSG00000278318.4|ZNF229|pc|chr19:44417518:44417546:-	0	-
#Split in new
chr19	44426250	44430542	ENSG00000278318.4|ZNF229|pc|chr19:44426250:44430542:-	0	-
#Split in new
chr19	44426254	44430542	ENSG00000278318.4|ZNF229|pc|chr19:44426254:44430542:-	0	-
#Deleted in new
chr19	4442924	4443392	ENSG00000167670.15|CHAF1A|pc|chr19:4442924:4443392:+	0	+
#Partially deleted in new
chr19	44431766	44432366	ENSG00000278318.4|ZNF229|pc|chr19:44431766:44432366:-	0	-
#Deleted in new
chr19	44442562	44442621	ENSG00000267188.1|AC245748.2|lncRNA|chr19:44442562:44442621:-	0	-
#Deleted in new
chr19	44442562	44442621	ENSG00000278318.4|ZNF229|pc|chr19:44442562:44442621:-	0	-
#Deleted in new
chr19	44442813	44443024	ENSG00000278318.4|ZNF229|pc|chr19:44442813:44443024:-	0	-
#Deleted in new
chr19	44442827	44443024	ENSG00000267188.1|AC245748.2|lncRNA|chr19:44442827:44443024:-	0	-
#Deleted in new
chr19	44442827	44443024	ENSG00000278318.4|ZNF229|pc|chr19:44442827:44443024:-	0	-
#Partially deleted in new
chr19	4444543	4445018	ENSG00000167670.15|CHAF1A|pc|chr19:4444543:4445018:+	0	+
#Deleted in new
chr19	44447512	44447600	ENSG00000267188.1|AC245748.2|lncRNA|chr19:44447512:44447600:-	0	-
#Deleted in new
chr19	44447512	44447600	ENSG00000278318.4|ZNF229|pc|chr19:44447512:44447600:-	0	-
#Deleted in new
chr19	44448308	44448446	ENSG00000278318.4|ZNF229|pc|chr19:44448308:44448446:-	0	-
#Deleted in new
chr19	44448308	44448452	ENSG00000267188.1|AC245748.2|lncRNA|chr19:44448308:44448452:-	0	-
#Deleted in new
chr19	44448308	44448461	ENSG00000278318.4|ZNF229|pc|chr19:44448308:44448461:-	0	-
#Deleted in new
chr19	44448308	44448472	ENSG00000278318.4|ZNF229|pc|chr19:44448308:44448472:-	0	-
#Deleted in new
chr19	44448308	44448477	ENSG00000278318.4|ZNF229|pc|chr19:44448308:44448477:-	0	-
#Deleted in new
chr19	44448520	44448578	ENSG00000278318.4|ZNF229|pc|chr19:44448520:44448578:-	0	-
#Deleted in new
chr19	4447303	4447325	ENSG00000267030.1|AC011498.2|lncRNA|chr19:4447303:4447325:+	0	+
#Partially deleted in new
chr19	4447549	4448116	ENSG00000167671.11|UBXN6|pc|chr19:4447549:4448116:-	0	-
#Deleted in new
chr19	4447699	4448217	ENSG00000267030.1|AC011498.2|lncRNA|chr19:4447699:4448217:+	0	+
#Partially deleted in new
chr19	4447838	4448415	ENSG00000167671.11|UBXN6|pc|chr19:4447838:4448415:-	0	-
#Partially deleted in new
chr19	4448317	4448870	ENSG00000167671.11|UBXN6|pc|chr19:4448317:4448870:-	0	-
#Deleted in new
chr19	44485035	44485157	ENSG00000167384.10|ZNF180|pc|chr19:44485035:44485157:-	0	-
#Deleted in new
chr19	4448809	4450836	ENSG00000280239.1|AC011498.7|lncRNA|chr19:4448809:4450836:+	0	+
#Deleted in new
chr19	44496547	44496665	ENSG00000167384.10|ZNF180|pc|chr19:44496547:44496665:-	0	-
#Deleted in new
chr19	44496547	44496669	ENSG00000167384.10|ZNF180|pc|chr19:44496547:44496669:-	0	-
#Deleted in new
chr19	44501676	44501779	ENSG00000273777.4|CEACAM20|pc|chr19:44501676:44501779:-	0	-
#Deleted in new
chr19	44536262	44536480	ENSG00000267614.1|AC245748.3|lncRNA|chr19:44536262:44536480:-	0	-
#Deleted in new
chr19	44536590	44536613	ENSG00000267614.1|AC245748.3|lncRNA|chr19:44536590:44536613:-	0	-
#Deleted in new
chr19	4454793	4455286	ENSG00000267769.1|AC011498.6|lncRNA|chr19:4454793:4455286:+	0	+
#Deleted in new
chr19	4455220	4455298	ENSG00000167671.11|UBXN6|pc|chr19:4455220:4455298:-	0	-
#Deleted in new
chr19	4455413	4455438	ENSG00000167671.11|UBXN6|pc|chr19:4455413:4455438:-	0	-
#Partially deleted in new
chr19	4457961	4458231	ENSG00000267011.5|AC011498.1|lncRNA|chr19:4457961:4458231:-	0	-
#Deleted in new
chr19	4458551	4458759	ENSG00000267011.5|AC011498.1|lncRNA|chr19:4458551:4458759:-	0	-
#Deleted in new
chr19	44632198	44632619	ENSG00000266903.1|AC243964.2|lncRNA|chr19:44632198:44632619:-	0	-
#Deleted in new
chr19	44635400	44635465	ENSG00000216588.8|IGSF23|pc|chr19:44635400:44635465:+	0	+
#Deleted in new
chr19	44635400	44635492	ENSG00000216588.8|IGSF23|pc|chr19:44635400:44635492:+	0	+
#Deleted in new
chr19	44636418	44636454	ENSG00000216588.8|IGSF23|pc|chr19:44636418:44636454:+	0	+
#Deleted in new
chr19	44636418	44636781	ENSG00000216588.8|IGSF23|pc|chr19:44636418:44636781:+	0	+
#Deleted in new
chr19	44643797	44644175	ENSG00000073008.14|PVR|pc|chr19:44643797:44644175:+	0	+
#Deleted in new
chr19	44643909	44644175	ENSG00000073008.14|PVR|pc|chr19:44643909:44644175:+	0	+
#Deleted in new
chr19	44643913	44644175	ENSG00000073008.14|PVR|pc|chr19:44643913:44644175:+	0	+
#Deleted in new
chr19	44644096	44644175	ENSG00000073008.14|PVR|pc|chr19:44644096:44644175:+	0	+
#Deleted in new
chr19	44658741	44658765	ENSG00000073008.14|PVR|pc|chr19:44658741:44658765:+	0	+
#Deleted in new
chr19	44658741	44658900	ENSG00000073008.14|PVR|pc|chr19:44658741:44658900:+	0	+
#Deleted in new
chr19	44658741	44659094	ENSG00000073008.14|PVR|pc|chr19:44658741:44659094:+	0	+
#Deleted in new
chr19	44661291	44661323	ENSG00000073008.14|PVR|pc|chr19:44661291:44661323:+	0	+
#Deleted in new
chr19	44661739	44661880	ENSG00000073008.14|PVR|pc|chr19:44661739:44661880:+	0	+
#Deleted in new
chr19	44661739	44663583	ENSG00000073008.14|PVR|pc|chr19:44661739:44663583:+	0	+
#Deleted in new
chr19	44662277	44662398	ENSG00000186567.12|CEACAM19|pc|chr19:44662277:44662398:+	0	+
#Deleted in new
chr19	44664130	44666158	ENSG00000279095.1|AC243964.3|lncRNA|chr19:44664130:44666158:+	0	+
#Deleted in new
chr19	44666957	44667321	ENSG00000186567.12|CEACAM19|pc|chr19:44666957:44667321:+	0	+
#Deleted in new
chr19	44671303	44671436	ENSG00000186567.12|CEACAM19|pc|chr19:44671303:44671436:+	0	+
#Deleted in new
chr19	44677584	44678936	ENSG00000186567.12|CEACAM19|pc|chr19:44677584:44678936:+	0	+
#Deleted in new
chr19	44678852	44678936	ENSG00000186567.12|CEACAM19|pc|chr19:44678852:44678936:+	0	+
#Deleted in new
chr19	44699083	44699177	ENSG00000266903.1|AC243964.2|lncRNA|chr19:44699083:44699177:-	0	-
#Deleted in new
chr19	44699150	44699260	ENSG00000213892.11|CEACAM16|pc|chr19:44699150:44699260:+	0	+
#Deleted in new
chr19	4470500	4470613	ENSG00000267011.5|AC011498.1|lncRNA|chr19:4470500:4470613:-	0	-
#Deleted in new
chr19	4471247	4471279	ENSG00000267011.5|AC011498.1|lncRNA|chr19:4471247:4471279:-	0	-
#Deleted in new
chr19	4471247	4471493	ENSG00000267011.5|AC011498.1|lncRNA|chr19:4471247:4471493:-	0	-
#Partially deleted in new
chr19	44718449	44718631	ENSG00000266903.1|AC243964.2|lncRNA|chr19:44718449:44718631:-	0	-
#Deleted in new
chr19	44800550	44800634	ENSG00000142273.10|CBLC|pc|chr19:44800550:44800634:+	0	+
#Partially deleted in new
chr19	44811224	44812046	ENSG00000187244.10|BCAM|pc|chr19:44811224:44812046:+	0	+
#Partially deleted in new
chr19	44812477	44812953	ENSG00000187244.10|BCAM|pc|chr19:44812477:44812953:+	0	+
#Deleted in new
chr19	4486382	4486385	ENSG00000167674.14|HDGFL2|pc|chr19:4486382:4486385:+	0	+
#Deleted in new
chr19	44914246	44914489	ENSG00000130208.9|APOC1|pc|chr19:44914246:44914489:+	0	+
#Deleted in new
chr19	44914324	44914489	ENSG00000130208.9|APOC1|pc|chr19:44914324:44914489:+	0	+
#Deleted in new
chr19	44918840	44918961	ENSG00000130208.9|APOC1|pc|chr19:44918840:44918961:+	0	+
#Deleted in new
chr19	44947202	44947311	ENSG00000234906.9|APOC2|pc|chr19:44947202:44947311:+	0	+
#Deleted in new
chr19	44948285	44948533	ENSG00000234906.9|APOC2|pc|chr19:44948285:44948533:+	0	+
#Deleted in new
chr19	44948465	44948533	ENSG00000224916.9|APOC4-APOC2|pc|chr19:44948465:44948533:+	0	+
#Deleted in new
chr19	44948465	44948533	ENSG00000234906.9|APOC2|pc|chr19:44948465:44948533:+	0	+
#Deleted in new
chr19	44950043	44950200	ENSG00000267114.1|AC011481.1|lncRNA|chr19:44950043:44950200:-	0	-
#Deleted in new
chr19	44950935	44951026	ENSG00000267114.1|AC011481.1|lncRNA|chr19:44950935:44951026:-	0	-
#Deleted in new
chr19	44953894	44954007	ENSG00000267114.1|AC011481.1|lncRNA|chr19:44953894:44954007:-	0	-
#Deleted in new
chr19	44954584	44954701	ENSG00000104853.15|CLPTM1|pc|chr19:44954584:44954701:+	0	+
#Deleted in new
chr19	44954590	44954701	ENSG00000104853.15|CLPTM1|pc|chr19:44954590:44954701:+	0	+
#Partially deleted in new
chr19	4496918	4498031	ENSG00000167674.14|HDGFL2|pc|chr19:4496918:4498031:+	0	+
#Deleted in new
chr19	44984286	44984616	ENSG00000104853.15|CLPTM1|pc|chr19:44984286:44984616:+	0	+
#Partially deleted in new
chr19	4502179	4504785	ENSG00000167676.4|PLIN4|pc|chr19:4502179:4504785:-	0	-
#Partially deleted in new
chr19	4502191	4504785	ENSG00000167676.4|PLIN4|pc|chr19:4502191:4504785:-	0	-
#Partially deleted in new
chr19	45069645	45070104	ENSG00000104859.14|CLASRP|pc|chr19:45069645:45070104:+	0	+
#Partially deleted in new
chr19	45076509	45076876	ENSG00000267348.2|AC011489.1|lncRNA|chr19:45076509:45076876:-	0	-
#Deleted in new
chr19	45079257	45079279	ENSG00000142252.10|GEMIN7|pc|chr19:45079257:45079279:+	0	+
#Deleted in new
chr19	45079906	45080029	ENSG00000142252.10|GEMIN7|pc|chr19:45079906:45080029:+	0	+
#Deleted in new
chr19	45085328	45085640	ENSG00000267348.2|AC011489.1|lncRNA|chr19:45085328:45085640:-	0	-
#Deleted in new
chr19	45088508	45088699	ENSG00000142252.10|GEMIN7|pc|chr19:45088508:45088699:+	0	+
#Deleted in new
chr19	45108686	45108918	ENSG00000104866.10|PPP1R37|pc|chr19:45108686:45108918:+	0	+
#Deleted in new
chr19	45136863	45136977	ENSG00000267044.1|AC005757.1|lncRNA|chr19:45136863:45136977:-	0	-
#Deleted in new
chr19	45178744	45178831	ENSG00000189114.6|BLOC1S3|pc|chr19:45178744:45178831:+	0	+
#Partially deleted in new
chr19	45179287	45181801	ENSG00000189114.6|BLOC1S3|pc|chr19:45179287:45181801:+	0	+
#Deleted in new
chr19	45180267	45180413	ENSG00000189114.6|BLOC1S3|pc|chr19:45180267:45180413:+	0	+
#Deleted in new
chr19	45181271	45181466	ENSG00000189114.6|BLOC1S3|pc|chr19:45181271:45181466:+	0	+
#Deleted in new
chr19	45181271	45181569	ENSG00000189114.6|BLOC1S3|pc|chr19:45181271:45181569:+	0	+
#Deleted in new
chr19	45187330	45187441	ENSG00000267545.1|AC005779.2|pc|chr19:45187330:45187441:+	0	+
#Deleted in new
chr19	45187387	45187441	ENSG00000266958.1|AC005779.1|lncRNA|chr19:45187387:45187441:+	0	+
#Deleted in new
chr19	45187586	45187740	ENSG00000267545.1|AC005779.2|pc|chr19:45187586:45187740:+	0	+
#Deleted in new
chr19	45187614	45187740	ENSG00000266958.1|AC005779.1|lncRNA|chr19:45187614:45187740:+	0	+
#Deleted in new
chr19	45198888	45199013	ENSG00000267545.1|AC005779.2|pc|chr19:45198888:45199013:+	0	+
#Deleted in new
chr19	45202405	45202444	ENSG00000267545.1|AC005779.2|pc|chr19:45202405:45202444:+	0	+
#Deleted in new
chr19	45202405	45202507	ENSG00000266958.1|AC005779.1|lncRNA|chr19:45202405:45202507:+	0	+
#Deleted in new
chr19	4529409	4529586	ENSG00000214456.8|PLIN5|pc|chr19:4529409:4529586:-	0	-
#Partially deleted in new
chr19	4532371	4534274	ENSG00000214456.8|PLIN5|pc|chr19:4532371:4534274:-	0	-
#Partially deleted in new
chr19	4533248	4534095	ENSG00000214456.8|PLIN5|pc|chr19:4533248:4534095:-	0	-
#Deleted in new
chr19	45333433	45334163	ENSG00000104892.16|KLC3|pc|chr19:45333433:45334163:+	0	+
#Deleted in new
chr19	45335941	45336019	ENSG00000104892.16|KLC3|pc|chr19:45335941:45336019:+	0	+
#Partially deleted in new
chr19	45357473	45358938	ENSG00000104884.14|ERCC2|pc|chr19:45357473:45358938:-	0	-
#Deleted in new
chr19	45401998	45402124	ENSG00000104881.15|PPP1R13L|pc|chr19:45401998:45402124:-	0	-
#Deleted in new
chr19	45414351	45414477	ENSG00000012061.15|ERCC1|pc|chr19:45414351:45414477:-	0	-
#Partially deleted in new
chr19	45416490	45416897	ENSG00000012061.15|ERCC1|pc|chr19:45416490:45416897:-	0	-
#Deleted in new
chr19	45419410	45419489	ENSG00000012061.15|ERCC1|pc|chr19:45419410:45419489:-	0	-
#Deleted in new
chr19	45450640	45450725	ENSG00000012061.15|ERCC1|pc|chr19:45450640:45450725:-	0	-
#Partially deleted in new
chr19	4545789	4546274	ENSG00000167680.15|SEMA6B|pc|chr19:4545789:4546274:-	0	-
#Partially deleted in new
chr19	45499609	45499725	ENSG00000213889.10|PPM1N|pc|chr19:45499609:45499725:+	0	+
#Duplicated in new
chr19	45527426	45529456	ENSG00000125741.4|OPA3|pc|chr19:45527426:45529456:-	0	-
#Partially deleted in new
chr19	45546280	45553911	ENSG00000125741.4|OPA3|pc|chr19:45546280:45553911:-	0	-
#Deleted in new
chr19	45606993	45607506	ENSG00000125746.16|EML2|pc|chr19:45606993:45607506:-	0	-
#Partially deleted in new
chr19	45614825	45615036	ENSG00000125746.16|EML2|pc|chr19:45614825:45615036:-	0	-
#Deleted in new
chr19	45623455	45623521	ENSG00000125746.16|EML2|pc|chr19:45623455:45623521:-	0	-
#Deleted in new
chr19	45628697	45628795	ENSG00000125746.16|EML2|pc|chr19:45628697:45628795:-	0	-
#Deleted in new
chr19	45640023	45640131	ENSG00000125746.16|EML2|pc|chr19:45640023:45640131:-	0	-
#Deleted in new
chr19	45675380	45675412	ENSG00000010310.8|GIPR|pc|chr19:45675380:45675412:+	0	+
#Partially deleted in new
chr19	45681728	45683724	ENSG00000010310.8|GIPR|pc|chr19:45681728:45683724:+	0	+
#Deleted in new
chr19	45689232	45689347	ENSG00000125743.10|SNRPD2|pc|chr19:45689232:45689347:-	0	-
#Deleted in new
chr19	45690571	45690667	ENSG00000125743.10|SNRPD2|pc|chr19:45690571:45690667:-	0	-
#Partially deleted in new
chr19	45714386	45717381	ENSG00000279407.1|AC007191.1|lncRNA|chr19:45714386:45717381:-	0	-
#Deleted in new
chr19	45723472	45723496	ENSG00000177051.5|FBXO46|pc|chr19:45723472:45723496:-	0	-
#Deleted in new
chr19	45739625	45739730	ENSG00000237452.2|BHMG1|pc|chr19:45739625:45739730:+	0	+
#Partially deleted in new
chr19	45776658	45777037	ENSG00000104936.17|DMPK|pc|chr19:45776658:45777037:-	0	-
#Partially deleted in new
chr19	45779133	45779168	ENSG00000104936.17|DMPK|pc|chr19:45779133:45779168:-	0	-
#Partially deleted in new
chr19	45780322	45780381	ENSG00000104936.17|DMPK|pc|chr19:45780322:45780381:-	0	-
#Partially deleted in new
chr19	45780322	45780541	ENSG00000104936.17|DMPK|pc|chr19:45780322:45780541:-	0	-
#Partially deleted in new
chr19	45786849	45787218	ENSG00000185800.11|DMWD|pc|chr19:45786849:45787218:-	0	-
#Deleted in new
chr19	45789258	45789487	ENSG00000185800.11|DMWD|pc|chr19:45789258:45789487:-	0	-
#Deleted in new
chr19	45789394	45790176	ENSG00000185800.11|DMWD|pc|chr19:45789394:45790176:-	0	-
#Deleted in new
chr19	45830967	45831108	ENSG00000269148.1|AC092301.1|lncRNA|chr19:45830967:45831108:+	0	+
#Partially deleted in new
chr19	45854390	45855710	ENSG00000125755.18|SYMPK|pc|chr19:45854390:45855710:-	0	-
#Partially deleted in new
chr19	45854390	45855807	ENSG00000125755.18|SYMPK|pc|chr19:45854390:45855807:-	0	-
#Deleted in new
chr19	45854808	45855205	ENSG00000125755.18|SYMPK|pc|chr19:45854808:45855205:-	0	-
#Deleted in new
chr19	45861899	45862027	ENSG00000125755.18|SYMPK|pc|chr19:45861899:45862027:-	0	-
#Deleted in new
chr19	45962271	45962606	ENSG00000104967.6|NOVA2|pc|chr19:45962271:45962606:-	0	-
#Deleted in new
chr19	45967393	45967939	ENSG00000104967.6|NOVA2|pc|chr19:45967393:45967939:-	0	-
#Deleted in new
chr19	45996244	45996401	ENSG00000104983.8|CCDC61|pc|chr19:45996244:45996401:+	0	+
#Deleted in new
chr19	46021081	46021318	ENSG00000104983.8|CCDC61|pc|chr19:46021081:46021318:+	0	+
#Deleted in new
chr19	46028146	46028258	ENSG00000268401.1|AC007785.3|lncRNA|chr19:46028146:46028258:+	0	+
#Deleted in new
chr19	46028146	46028489	ENSG00000268401.1|AC007785.3|lncRNA|chr19:46028146:46028489:+	0	+
#Deleted in new
chr19	46030119	46030161	ENSG00000268401.1|AC007785.3|lncRNA|chr19:46030119:46030161:+	0	+
#Partially deleted in new
chr19	46039747	46039936	ENSG00000204869.8|IGFL4|pc|chr19:46039747:46039936:-	0	-
#Deleted in new
chr19	46040517	46040568	ENSG00000204869.8|IGFL4|pc|chr19:46040517:46040568:-	0	-
#Deleted in new
chr19	46040517	46040766	ENSG00000204869.8|IGFL4|pc|chr19:46040517:46040766:-	0	-
#Deleted in new
chr19	46040943	46041016	ENSG00000204869.8|IGFL4|pc|chr19:46040943:46041016:-	0	-
#Deleted in new
chr19	46041051	46041110	ENSG00000204869.8|IGFL4|pc|chr19:46041051:46041110:-	0	-
#Deleted in new
chr19	46057673	46060293	ENSG00000204869.8|IGFL4|pc|chr19:46057673:46060293:-	0	-
#Deleted in new
chr19	46060184	46060293	ENSG00000204869.8|IGFL4|pc|chr19:46060184:46060293:-	0	-
#Deleted in new
chr19	46062752	46062928	ENSG00000204869.8|IGFL4|pc|chr19:46062752:46062928:-	0	-
#Deleted in new
chr19	46077019	46077094	ENSG00000204869.8|IGFL4|pc|chr19:46077019:46077094:-	0	-
#Deleted in new
chr19	46077019	46077118	ENSG00000204869.8|IGFL4|pc|chr19:46077019:46077118:-	0	-
#Deleted in new
chr19	46101121	46101137	ENSG00000267922.1|AC007785.1|lncRNA|chr19:46101121:46101137:+	0	+
#Deleted in new
chr19	46120070	46120357	ENSG00000188624.2|IGFL3|pc|chr19:46120070:46120357:-	0	-
#Deleted in new
chr19	46124267	46124321	ENSG00000188624.2|IGFL3|pc|chr19:46124267:46124321:-	0	-
#Deleted in new
chr19	46124624	46124674	ENSG00000188624.2|IGFL3|pc|chr19:46124624:46124674:-	0	-
#Deleted in new
chr19	46143105	46143212	ENSG00000204866.8|IGFL2|pc|chr19:46143105:46143212:+	0	+
#Deleted in new
chr19	46147781	46147911	ENSG00000204866.8|IGFL2|pc|chr19:46147781:46147911:+	0	+
#Deleted in new
chr19	46148242	46148297	ENSG00000204866.8|IGFL2|pc|chr19:46148242:46148297:+	0	+
#Deleted in new
chr19	46159045	46160468	ENSG00000204866.8|IGFL2|pc|chr19:46159045:46160468:+	0	+
#Deleted in new
chr19	46160414	46160468	ENSG00000204866.8|IGFL2|pc|chr19:46160414:46160468:+	0	+
#Partially deleted in new
chr19	46161069	46161288	ENSG00000204866.8|IGFL2|pc|chr19:46161069:46161288:+	0	+
#Partially deleted in new
chr19	46161069	46161289	ENSG00000204866.8|IGFL2|pc|chr19:46161069:46161289:+	0	+
#Partially deleted in new
chr19	46161069	46161298	ENSG00000204866.8|IGFL2|pc|chr19:46161069:46161298:+	0	+
#Partially deleted in new
chr19	46161069	46161299	ENSG00000204866.8|IGFL2|pc|chr19:46161069:46161299:+	0	+
#Partially deleted in new
chr19	46161072	46161288	ENSG00000204866.8|IGFL2|pc|chr19:46161072:46161288:+	0	+
#Deleted in new
chr19	46163892	46164216	ENSG00000269729.1|AC006262.2|lncRNA|chr19:46163892:46164216:-	0	-
#Deleted in new
chr19	46164577	46164651	ENSG00000269729.1|AC006262.2|lncRNA|chr19:46164577:46164651:-	0	-
#Deleted in new
chr19	46173534	46173771	ENSG00000269729.1|AC006262.2|lncRNA|chr19:46173534:46173771:-	0	-
#Deleted in new
chr19	46173933	46174029	ENSG00000269729.1|AC006262.2|lncRNA|chr19:46173933:46174029:-	0	-
#Deleted in new
chr19	46173933	46174052	ENSG00000269729.1|AC006262.2|lncRNA|chr19:46173933:46174052:-	0	-
#Deleted in new
chr19	46179485	46179537	ENSG00000269729.1|AC006262.2|lncRNA|chr19:46179485:46179537:-	0	-
#Deleted in new
chr19	46180604	46180647	ENSG00000269729.1|AC006262.2|lncRNA|chr19:46180604:46180647:-	0	-
#Deleted in new
chr19	46181234	46181340	ENSG00000267922.1|AC007785.1|lncRNA|chr19:46181234:46181340:+	0	+
#Deleted in new
chr19	46189165	46189229	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46189165:46189229:-	0	-
#Deleted in new
chr19	46189635	46190414	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46189635:46190414:-	0	-
#Deleted in new
chr19	46195058	46195158	ENSG00000267922.1|AC007785.1|lncRNA|chr19:46195058:46195158:+	0	+
#Deleted in new
chr19	46195777	46195838	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46195777:46195838:-	0	-
#Deleted in new
chr19	46196108	46196218	ENSG00000267922.1|AC007785.1|lncRNA|chr19:46196108:46196218:+	0	+
#Deleted in new
chr19	46198099	46198442	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46198099:46198442:-	0	-
#Deleted in new
chr19	46198286	46198442	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46198286:46198442:-	0	-
#Deleted in new
chr19	46198407	46198442	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46198407:46198442:-	0	-
#Deleted in new
chr19	46200786	46200846	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46200786:46200846:-	0	-
#Deleted in new
chr19	46202534	46202734	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46202534:46202734:-	0	-
#Deleted in new
chr19	46202839	46202929	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46202839:46202929:-	0	-
#Deleted in new
chr19	46202839	46202966	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46202839:46202966:-	0	-
#Deleted in new
chr19	46202839	46203034	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46202839:46203034:-	0	-
#Deleted in new
chr19	46202839	46203062	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46202839:46203062:-	0	-
#Deleted in new
chr19	46202839	46203083	ENSG00000268621.5|IGFL2-AS1|lncRNA|chr19:46202839:46203083:-	0	-
#Deleted in new
chr19	46203425	46203656	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46203425:46203656:+	0	+
#Deleted in new
chr19	46204051	46204214	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46204051:46204214:+	0	+
#Deleted in new
chr19	46204804	46204920	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46204804:46204920:+	0	+
#Deleted in new
chr19	46206742	46210088	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46206742:46210088:+	0	+
#Deleted in new
chr19	46208931	46209169	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46208931:46209169:+	0	+
#Deleted in new
chr19	46210161	46210269	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46210161:46210269:+	0	+
#Deleted in new
chr19	46210241	46210269	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46210241:46210269:+	0	+
#Deleted in new
chr19	46211608	46211678	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46211608:46211678:+	0	+
#Deleted in new
chr19	46212115	46212234	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46212115:46212234:+	0	+
#Deleted in new
chr19	46212115	46212575	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46212115:46212575:+	0	+
#Deleted in new
chr19	46212789	46213010	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46212789:46213010:+	0	+
#Deleted in new
chr19	46213328	46213483	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46213328:46213483:+	0	+
#Deleted in new
chr19	46213796	46214837	ENSG00000268460.1|AC006262.1|lncRNA|chr19:46213796:46214837:+	0	+
#Deleted in new
chr19	46228963	46229126	ENSG00000269745.1|AC006262.3|lncRNA|chr19:46228963:46229126:-	0	-
#Deleted in new
chr19	46229751	46229799	ENSG00000188293.5|IGFL1|pc|chr19:46229751:46229799:+	0	+
#Deleted in new
chr19	46230107	46230161	ENSG00000188293.5|IGFL1|pc|chr19:46230107:46230161:+	0	+
#Deleted in new
chr19	46230273	46230517	ENSG00000188293.5|IGFL1|pc|chr19:46230273:46230517:+	0	+
#Deleted in new
chr19	46230293	46230388	ENSG00000269745.1|AC006262.3|lncRNA|chr19:46230293:46230388:-	0	-
#Deleted in new
chr19	46230820	46231243	ENSG00000188293.5|IGFL1|pc|chr19:46230820:46231243:+	0	+
#Deleted in new
chr19	46310541	46310691	ENSG00000124440.15|HIF3A|pc|chr19:46310541:46310691:+	0	+
#Deleted in new
chr19	46338226	46338538	ENSG00000124440.15|HIF3A|pc|chr19:46338226:46338538:+	0	+
#Partially deleted in new
chr19	46381510	46383878	ENSG00000011485.14|PPP5C|pc|chr19:46381510:46383878:+	0	+
#Partially deleted in new
chr19	46381725	46383476	ENSG00000011485.14|PPP5C|pc|chr19:46381725:46383476:+	0	+
#Deleted in new
chr19	46382491	46382524	ENSG00000268810.1|AC007193.1|lncRNA|chr19:46382491:46382524:-	0	-
#Deleted in new
chr19	46382754	46383169	ENSG00000268810.1|AC007193.1|lncRNA|chr19:46382754:46383169:-	0	-
#Deleted in new
chr19	46391150	46391258	ENSG00000011485.14|PPP5C|pc|chr19:46391150:46391258:+	0	+
#Deleted in new
chr19	46392636	46392981	ENSG00000011485.14|PPP5C|pc|chr19:46392636:46392981:+	0	+
#Deleted in new
chr19	4639517	4639629	ENSG00000185361.8|TNFAIP8L1|pc|chr19:4639517:4639629:+	0	+
#Deleted in new
chr19	4639536	4642482	ENSG00000185361.8|TNFAIP8L1|pc|chr19:4639536:4642482:+	0	+
#Deleted in new
chr19	4640016	4640159	ENSG00000185361.8|TNFAIP8L1|pc|chr19:4640016:4640159:+	0	+
#Partially deleted in new
chr1	946401	947060	ENSG00000188976.10|NOC2L|pc|chr1:946401:947060:-	0	-
#Deleted in new
chr19	4641373	4641650	ENSG00000074842.7|MYDGF|pc|chr19:4641373:4641650:-	0	-
#Partially deleted in new
chr19	46480795	46481440	ENSG00000230510.6|PPP5D1|pc|chr19:46480795:46481440:-	0	-
#Partially deleted in new
chr19	46481084	46481440	ENSG00000230510.6|PPP5D1|pc|chr19:46481084:46481440:-	0	-
#Deleted in new
chr19	46489865	46490120	ENSG00000230510.6|PPP5D1|pc|chr19:46489865:46490120:-	0	-
#Partially deleted in new
chr19	4651866	4655568	ENSG00000185361.8|TNFAIP8L1|pc|chr19:4651866:4655568:+	0	+
#Deleted in new
chr19	46518678	46519972	ENSG00000230510.6|PPP5D1|pc|chr19:46518678:46519972:-	0	-
#Deleted in new
chr19	46547055	46547141	ENSG00000268423.4|AC093503.1|lncRNA|chr19:46547055:46547141:-	0	-
#Deleted in new
chr19	4654963	4655022	ENSG00000268565.1|AC005339.1|lncRNA|chr19:4654963:4655022:-	0	-
#Deleted in new
chr19	4655191	4655524	ENSG00000268565.1|AC005339.1|lncRNA|chr19:4655191:4655524:-	0	-
#Deleted in new
chr19	46568077	46568427	ENSG00000268423.4|AC093503.1|lncRNA|chr19:46568077:46568427:-	0	-
#Partially deleted in new
chr19	4657544	4658084	ENSG00000074842.7|MYDGF|pc|chr19:4657544:4658084:-	0	-
#Deleted in new
chr19	46576598	46576717	ENSG00000268423.4|AC093503.1|lncRNA|chr19:46576598:46576717:-	0	-
#Deleted in new
chr19	46589145	46589154	ENSG00000268423.4|AC093503.1|lncRNA|chr19:46589145:46589154:-	0	-
#Deleted in new
chr19	46589145	46589235	ENSG00000268423.4|AC093503.1|lncRNA|chr19:46589145:46589235:-	0	-
#Deleted in new
chr19	46589563	46589678	ENSG00000268423.4|AC093503.1|lncRNA|chr19:46589563:46589678:-	0	-
#Partially deleted in new
chr19	46598148	46600925	ENSG00000230510.6|PPP5D1|pc|chr19:46598148:46600925:-	0	-
#Deleted in new
chr19	46623129	46623317	ENSG00000160013.8|PTGIR|pc|chr19:46623129:46623317:-	0	-
#Partially deleted in new
chr19	46650147	46652812	ENSG00000197380.10|DACT3|pc|chr19:46650147:46652812:-	0	-
#Deleted in new
chr19	46669167	46669310	ENSG00000245598.6|DACT3-AS1|lncRNA|chr19:46669167:46669310:+	0	+
#Deleted in new
chr19	46671140	46671341	ENSG00000245598.6|DACT3-AS1|lncRNA|chr19:46671140:46671341:+	0	+
#Deleted in new
chr19	46673468	46673636	ENSG00000245598.6|DACT3-AS1|lncRNA|chr19:46673468:46673636:+	0	+
#Deleted in new
chr19	46677139	46677447	ENSG00000245598.6|DACT3-AS1|lncRNA|chr19:46677139:46677447:+	0	+
#Deleted in new
chr19	46736149	46736349	ENSG00000090372.14|STRN4|pc|chr19:46736149:46736349:-	0	-
#Deleted in new
chr19	46736204	46736268	ENSG00000090372.14|STRN4|pc|chr19:46736204:46736268:-	0	-
#Deleted in new
chr19	46740163	46740285	ENSG00000090372.14|STRN4|pc|chr19:46740163:46740285:-	0	-
#Deleted in new
chr19	46747578	46747681	ENSG00000181027.10|FKRP|pc|chr19:46747578:46747681:+	0	+
#Deleted in new
chr19	46747578	46747732	ENSG00000181027.10|FKRP|pc|chr19:46747578:46747732:+	0	+
#Partially deleted in new
chr19	46748514	46748621	ENSG00000181027.10|FKRP|pc|chr19:46748514:46748621:+	0	+
#Partially deleted in new
chr19	46748514	46748963	ENSG00000181027.10|FKRP|pc|chr19:46748514:46748963:+	0	+
#Deleted in new
chr19	46748757	46748884	ENSG00000181027.10|FKRP|pc|chr19:46748757:46748884:+	0	+
#Deleted in new
chr19	46748774	46748884	ENSG00000181027.10|FKRP|pc|chr19:46748774:46748884:+	0	+
#Deleted in new
chr19	46753835	46754025	ENSG00000181027.10|FKRP|pc|chr19:46753835:46754025:+	0	+
#Deleted in new
chr19	46754101	46754181	ENSG00000181027.10|FKRP|pc|chr19:46754101:46754181:+	0	+
#Deleted in new
chr19	46754248	46754315	ENSG00000181027.10|FKRP|pc|chr19:46754248:46754315:+	0	+
#Deleted in new
chr19	46761832	46762006	ENSG00000181027.10|FKRP|pc|chr19:46761832:46762006:+	0	+
#Deleted in new
chr19	4679281	4679539	ENSG00000205790.1|DPP9-AS1|lncRNA|chr19:4679281:4679539:+	0	+
#Partially deleted in new
chr19	4683710	4685948	ENSG00000205790.1|DPP9-AS1|lncRNA|chr19:4683710:4685948:+	0	+
#Partially deleted in new
chr19	4688291	4688892	ENSG00000142002.16|DPP9|pc|chr19:4688291:4688892:-	0	-
#Partially deleted in new
chr19	46946534	46949156	ENSG00000279948.1|AC008895.1|lncRNA|chr19:46946534:46949156:+	0	+
#Deleted in new
chr19	46997496	46997750	ENSG00000160007.18|ARHGAP35|pc|chr19:46997496:46997750:+	0	+
#Partially deleted in new
chr19	47002137	47004307	ENSG00000160007.18|ARHGAP35|pc|chr19:47002137:47004307:+	0	+
#Deleted in new
chr19	47035328	47035358	ENSG00000130751.9|NPAS1|pc|chr19:47035328:47035358:+	0	+
#Deleted in new
chr19	47035331	47035358	ENSG00000130751.9|NPAS1|pc|chr19:47035331:47035358:+	0	+
#Deleted in new
chr19	47035347	47035358	ENSG00000130751.9|NPAS1|pc|chr19:47035347:47035358:+	0	+
#Deleted in new
chr19	47035349	47035358	ENSG00000130751.9|NPAS1|pc|chr19:47035349:47035358:+	0	+
#Deleted in new
chr19	47125095	47125330	ENSG00000142230.11|SAE1|pc|chr19:47125095:47125330:+	0	+
#Deleted in new
chr19	47135527	47135605	ENSG00000142230.11|SAE1|pc|chr19:47135527:47135605:+	0	+
#Partially deleted in new
chr19	4715528	4715726	ENSG00000142002.16|DPP9|pc|chr19:4715528:4715726:-	0	-
#Split in new
chr19	4715664	4716127	ENSG00000142002.16|DPP9|pc|chr19:4715664:4716127:-	0	-
#Partially deleted in new
chr19	4716052	4716152	ENSG00000142002.16|DPP9|pc|chr19:4716052:4716152:-	0	-
#Deleted in new
chr19	47180145	47180303	ENSG00000142230.11|SAE1|pc|chr19:47180145:47180303:+	0	+
#Deleted in new
chr19	4719202	4719324	ENSG00000142002.16|DPP9|pc|chr19:4719202:4719324:-	0	-
#Deleted in new
chr19	4719617	4719941	ENSG00000142002.16|DPP9|pc|chr19:4719617:4719941:-	0	-
#Deleted in new
chr19	4719850	4719941	ENSG00000142002.16|DPP9|pc|chr19:4719850:4719941:-	0	-
#Deleted in new
chr19	4719922	4719941	ENSG00000142002.16|DPP9|pc|chr19:4719922:4719941:-	0	-
#Partially deleted in new
chr19	47209158	47210170	ENSG00000142230.11|SAE1|pc|chr19:47209158:47210170:+	0	+
#Partially deleted in new
chr19	47209158	47210190	ENSG00000142230.11|SAE1|pc|chr19:47209158:47210190:+	0	+
#Partially deleted in new
chr19	47209158	47210191	ENSG00000142230.11|SAE1|pc|chr19:47209158:47210191:+	0	+
#Partially deleted in new
chr19	47209158	47210636	ENSG00000142230.11|SAE1|pc|chr19:47209158:47210636:+	0	+
#Deleted in new
chr19	4724406	4724532	ENSG00000142002.16|DPP9|pc|chr19:4724406:4724532:-	0	-
#Deleted in new
chr19	4724633	4724673	ENSG00000142002.16|DPP9|pc|chr19:4724633:4724673:-	0	-
#Partially deleted in new
chr19	47255979	47256358	ENSG00000105321.12|CCDC9|pc|chr19:47255979:47256358:+	0	+
#Deleted in new
chr19	47290022	47290061	ENSG00000197405.7|C5AR1|pc|chr19:47290022:47290061:+	0	+
#Deleted in new
chr19	47291977	47292173	ENSG00000197405.7|C5AR1|pc|chr19:47291977:47292173:+	0	+
#Deleted in new
chr19	47297074	47297192	ENSG00000197405.7|C5AR1|pc|chr19:47297074:47297192:+	0	+
#Deleted in new
chr19	47307368	47307510	ENSG00000197405.7|C5AR1|pc|chr19:47307368:47307510:+	0	+
#Deleted in new
chr19	47307724	47307754	ENSG00000197405.7|C5AR1|pc|chr19:47307724:47307754:+	0	+
#Deleted in new
chr19	47316468	47316583	ENSG00000197405.7|C5AR1|pc|chr19:47316468:47316583:+	0	+
#Partially deleted in new
chr19	47340784	47347327	ENSG00000134830.5|C5AR2|pc|chr19:47340784:47347327:+	0	+
#Deleted in new
chr19	47376914	47376989	ENSG00000134815.18|DHX34|pc|chr19:47376914:47376989:+	0	+
#Partially deleted in new
chr19	47381979	47382704	ENSG00000134815.18|DHX34|pc|chr19:47381979:47382704:+	0	+
#Deleted in new
chr19	47412234	47412387	ENSG00000105419.17|MEIS3|pc|chr19:47412234:47412387:-	0	-
#Deleted in new
chr19	47419431	47419523	ENSG00000105419.17|MEIS3|pc|chr19:47419431:47419523:-	0	-
#Deleted in new
chr19	47495027	47495144	ENSG00000268061.5|NAPA-AS1|lncRNA|chr19:47495027:47495144:+	0	+
#Partially deleted in new
chr19	47496595	47496914	ENSG00000105402.7|NAPA|pc|chr19:47496595:47496914:-	0	-
#Deleted in new
chr19	47497393	47497502	ENSG00000105402.7|NAPA|pc|chr19:47497393:47497502:-	0	-
#Deleted in new
chr19	47505336	47505543	ENSG00000105402.7|NAPA|pc|chr19:47505336:47505543:-	0	-
#Deleted in new
chr19	47539704	47539878	ENSG00000118156.12|ZNF541|pc|chr19:47539704:47539878:-	0	-
#Deleted in new
chr19	47607523	47607609	ENSG00000268746.1|AC010519.1|lncRNA|chr19:47607523:47607609:+	0	+
#Deleted in new
chr19	47615698	47616016	ENSG00000269806.1|BICRA-AS1|lncRNA|chr19:47615698:47616016:-	0	-
#Deleted in new
chr19	47626166	47626395	ENSG00000269806.1|BICRA-AS1|lncRNA|chr19:47626166:47626395:-	0	-
#Deleted in new
chr19	47661656	47663895	ENSG00000278999.1|AC008985.1|lncRNA|chr19:47661656:47663895:-	0	-
#Partially deleted in new
chr19	47678961	47679333	ENSG00000063169.10|BICRA|pc|chr19:47678961:47679333:+	0	+
#Partially deleted in new
chr19	4770084	4770221	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4770084:4770221:+	0	+
#Partially deleted in new
chr19	4770087	4770221	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4770087:4770221:+	0	+
#Deleted in new
chr19	4770148	4770221	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4770148:4770221:+	0	+
#Deleted in new
chr19	4770154	4770221	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4770154:4770221:+	0	+
#Deleted in new
chr19	4770347	4770400	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4770347:4770400:+	0	+
#Deleted in new
chr19	4770347	4770449	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4770347:4770449:+	0	+
#Deleted in new
chr19	4770372	4770449	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4770372:4770449:+	0	+
#Deleted in new
chr19	47713342	47713538	ENSG00000024422.11|EHD2|pc|chr19:47713342:47713538:+	0	+
#Deleted in new
chr19	47713421	47713538	ENSG00000024422.11|EHD2|pc|chr19:47713421:47713538:+	0	+
#Partially deleted in new
chr19	4772131	4772514	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4772131:4772514:+	0	+
#Partially deleted in new
chr19	4772131	4772517	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4772131:4772517:+	0	+
#Deleted in new
chr19	4772163	4772362	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4772163:4772362:+	0	+
#Partially deleted in new
chr19	4772163	4772414	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4772163:4772414:+	0	+
#Partially deleted in new
chr19	4772163	4772499	ENSG00000176840.11|MIR7-3HG|lncRNA|chr19:4772163:4772499:+	0	+
#Partially deleted in new
chr19	47726203	47726319	ENSG00000024422.11|EHD2|pc|chr19:47726203:47726319:+	0	+
#Deleted in new
chr19	47731330	47731508	ENSG00000024422.11|EHD2|pc|chr19:47731330:47731508:+	0	+
#Deleted in new
chr19	47732064	47732214	ENSG00000268746.1|AC010519.1|lncRNA|chr19:47732064:47732214:+	0	+
#Deleted in new
chr19	47732990	47733098	ENSG00000268746.1|AC010519.1|lncRNA|chr19:47732990:47733098:+	0	+
#Deleted in new
chr19	47745890	47746029	ENSG00000105373.18|NOP53|pc|chr19:47745890:47746029:+	0	+
#Deleted in new
chr19	47746208	47746686	ENSG00000105373.18|NOP53|pc|chr19:47746208:47746686:+	0	+
#Partially deleted in new
chr19	47752511	47754891	ENSG00000105373.18|NOP53|pc|chr19:47752511:47754891:+	0	+
#Partially deleted in new
chr19	47757035	47757277	ENSG00000269656.1|NOP53-AS1|lncRNA|chr19:47757035:47757277:-	0	-
#Partially deleted in new
chr19	47779238	47779856	ENSG00000178980.14|SELENOW|pc|chr19:47779238:47779856:+	0	+
#Partially deleted in new
chr19	47779496	47779962	ENSG00000178980.14|SELENOW|pc|chr19:47779496:47779962:+	0	+
#Deleted in new
chr19	47780119	47780131	ENSG00000178980.14|SELENOW|pc|chr19:47780119:47780131:+	0	+
#Partially deleted in new
chr19	47782179	47784682	ENSG00000178980.14|SELENOW|pc|chr19:47782179:47784682:+	0	+
#Deleted in new
chr19	47801242	47802980	ENSG00000178928.8|TPRX1|pc|chr19:47801242:47802980:-	0	-
#Deleted in new
chr19	47801479	47802517	ENSG00000178928.8|TPRX1|pc|chr19:47801479:47802517:-	0	-
#Deleted in new
chr19	47802547	47802980	ENSG00000178928.8|TPRX1|pc|chr19:47802547:47802980:-	0	-
#Deleted in new
chr19	47803503	47803558	ENSG00000178928.8|TPRX1|pc|chr19:47803503:47803558:-	0	-
#Deleted in new
chr19	47803503	47803673	ENSG00000178928.8|TPRX1|pc|chr19:47803503:47803673:-	0	-
#Deleted in new
chr19	47803503	47803689	ENSG00000178928.8|TPRX1|pc|chr19:47803503:47803689:-	0	-
#Deleted in new
chr19	47818467	47818538	ENSG00000178928.8|TPRX1|pc|chr19:47818467:47818538:-	0	-
#Deleted in new
chr19	47818971	47819051	ENSG00000178928.8|TPRX1|pc|chr19:47818971:47819051:-	0	-
#Deleted in new
chr19	47840709	47840754	ENSG00000105392.15|CRX|pc|chr19:47840709:47840754:+	0	+
#Deleted in new
chr19	47842511	47843109	ENSG00000105392.15|CRX|pc|chr19:47842511:47843109:+	0	+
#Partially deleted in new
chr19	47842553	47843323	ENSG00000105392.15|CRX|pc|chr19:47842553:47843323:+	0	+
#Deleted in new
chr19	47863482	47864026	ENSG00000259108.2|LINC01595|lncRNA|chr19:47863482:47864026:-	0	-
#Deleted in new
chr19	47863615	47864026	ENSG00000259108.2|LINC01595|lncRNA|chr19:47863615:47864026:-	0	-
#Deleted in new
chr19	47864404	47864499	ENSG00000259108.2|LINC01595|lncRNA|chr19:47864404:47864499:-	0	-
#Deleted in new
chr19	47865270	47865341	ENSG00000259108.2|LINC01595|lncRNA|chr19:47865270:47865341:-	0	-
#Partially deleted in new
chr19	47870465	47871567	ENSG00000105398.3|SULT2A1|pc|chr19:47870465:47871567:-	0	-
#Deleted in new
chr19	4791197	4791207	ENSG00000268536.1|AC005523.1|lncRNA|chr19:4791197:4791207:-	0	-
#Partially deleted in new
chr19	4791680	4801273	ENSG00000141965.4|FEM1A|pc|chr19:4791680:4801273:+	0	+
#Deleted in new
chr19	4794981	4795091	ENSG00000269604.1|AC005523.2|lncRNA|chr19:4794981:4795091:-	0	-
#Deleted in new
chr19	4795266	4795559	ENSG00000269604.1|AC005523.2|lncRNA|chr19:4795266:4795559:-	0	-
#Deleted in new
chr19	47968045	47968209	ENSG00000188334.3|BSPH1|pc|chr19:47968045:47968209:-	0	-
#Deleted in new
chr19	47980920	47980941	ENSG00000188334.3|BSPH1|pc|chr19:47980920:47980941:-	0	-
#Deleted in new
chr19	47992008	47992170	ENSG00000188334.3|BSPH1|pc|chr19:47992008:47992170:-	0	-
#Deleted in new
chr19	47994650	47994811	ENSG00000169393.8|ELSPBP1|pc|chr19:47994650:47994811:+	0	+
#Deleted in new
chr19	47994704	47994811	ENSG00000169393.8|ELSPBP1|pc|chr19:47994704:47994811:+	0	+
#Deleted in new
chr19	47994708	47994811	ENSG00000169393.8|ELSPBP1|pc|chr19:47994708:47994811:+	0	+
#Deleted in new
chr19	48008648	48008693	ENSG00000169393.8|ELSPBP1|pc|chr19:48008648:48008693:+	0	+
#Deleted in new
chr19	48008650	48008737	ENSG00000169393.8|ELSPBP1|pc|chr19:48008650:48008737:+	0	+
#Deleted in new
chr19	48008694	48008737	ENSG00000169393.8|ELSPBP1|pc|chr19:48008694:48008737:+	0	+
#Deleted in new
chr19	48015892	48016039	ENSG00000169393.8|ELSPBP1|pc|chr19:48015892:48016039:+	0	+
#Deleted in new
chr19	48019718	48019877	ENSG00000169393.8|ELSPBP1|pc|chr19:48019718:48019877:+	0	+
#Deleted in new
chr19	48019804	48019877	ENSG00000169393.8|ELSPBP1|pc|chr19:48019804:48019877:+	0	+
#Deleted in new
chr19	48022169	48022243	ENSG00000169393.8|ELSPBP1|pc|chr19:48022169:48022243:+	0	+
#Deleted in new
chr19	48022169	48022334	ENSG00000169393.8|ELSPBP1|pc|chr19:48022169:48022334:+	0	+
#Deleted in new
chr19	48022169	48022339	ENSG00000169393.8|ELSPBP1|pc|chr19:48022169:48022339:+	0	+
#Deleted in new
chr19	48022169	48022376	ENSG00000169393.8|ELSPBP1|pc|chr19:48022169:48022376:+	0	+
#Deleted in new
chr19	48024930	48025148	ENSG00000169393.8|ELSPBP1|pc|chr19:48024930:48025148:+	0	+
#Deleted in new
chr19	48024951	48025134	ENSG00000169393.8|ELSPBP1|pc|chr19:48024951:48025134:+	0	+
#Deleted in new
chr19	48024951	48025142	ENSG00000169393.8|ELSPBP1|pc|chr19:48024951:48025142:+	0	+
#Deleted in new
chr19	48024951	48025146	ENSG00000169393.8|ELSPBP1|pc|chr19:48024951:48025146:+	0	+
#Deleted in new
chr19	48024951	48025153	ENSG00000169393.8|ELSPBP1|pc|chr19:48024951:48025153:+	0	+
#Deleted in new
chr19	48051796	48052272	ENSG00000105499.13|PLA2G4C|pc|chr19:48051796:48052272:-	0	-
#Deleted in new
chr19	48061359	48061442	ENSG00000105499.13|PLA2G4C|pc|chr19:48061359:48061442:-	0	-
#Deleted in new
chr19	48061370	48061478	ENSG00000269420.5|PLA2G4C-AS1|lncRNA|chr19:48061370:48061478:+	0	+
#Deleted in new
chr19	48061427	48061478	ENSG00000269420.5|PLA2G4C-AS1|lncRNA|chr19:48061427:48061478:+	0	+
#Deleted in new
chr19	48061437	48061478	ENSG00000269420.5|PLA2G4C-AS1|lncRNA|chr19:48061437:48061478:+	0	+
#Deleted in new
chr19	48061585	48061688	ENSG00000269420.5|PLA2G4C-AS1|lncRNA|chr19:48061585:48061688:+	0	+
#Deleted in new
chr19	48061617	48061688	ENSG00000269420.5|PLA2G4C-AS1|lncRNA|chr19:48061617:48061688:+	0	+
#Deleted in new
chr19	48061631	48061837	ENSG00000105499.13|PLA2G4C|pc|chr19:48061631:48061837:-	0	-
#Deleted in new
chr19	48061804	48061837	ENSG00000105499.13|PLA2G4C|pc|chr19:48061804:48061837:-	0	-
#Deleted in new
chr19	48063829	48063923	ENSG00000269420.5|PLA2G4C-AS1|lncRNA|chr19:48063829:48063923:+	0	+
#Deleted in new
chr19	48064749	48064945	ENSG00000269420.5|PLA2G4C-AS1|lncRNA|chr19:48064749:48064945:+	0	+
#Deleted in new
chr19	48072335	48073051	ENSG00000105499.13|PLA2G4C|pc|chr19:48072335:48073051:-	0	-
#Deleted in new
chr19	48077770	48077824	ENSG00000105499.13|PLA2G4C|pc|chr19:48077770:48077824:-	0	-
#Duplicated in new
chr19	48090193	48090417	ENSG00000105499.13|PLA2G4C|pc|chr19:48090193:48090417:-	0	-
#Deleted in new
chr19	48097021	48097127	ENSG00000105499.13|PLA2G4C|pc|chr19:48097021:48097127:-	0	-
#Deleted in new
chr19	48103419	48103451	ENSG00000105499.13|PLA2G4C|pc|chr19:48103419:48103451:-	0	-
#Deleted in new
chr19	48106521	48106561	ENSG00000105499.13|PLA2G4C|pc|chr19:48106521:48106561:-	0	-
#Deleted in new
chr19	48106521	48106666	ENSG00000105499.13|PLA2G4C|pc|chr19:48106521:48106666:-	0	-
#Deleted in new
chr19	48108783	48108901	ENSG00000105499.13|PLA2G4C|pc|chr19:48108783:48108901:-	0	-
#Deleted in new
chr19	48108783	48108922	ENSG00000105499.13|PLA2G4C|pc|chr19:48108783:48108922:-	0	-
#Deleted in new
chr19	48110486	48110561	ENSG00000105499.13|PLA2G4C|pc|chr19:48110486:48110561:-	0	-
#Deleted in new
chr19	48110486	48110563	ENSG00000105499.13|PLA2G4C|pc|chr19:48110486:48110563:-	0	-
#Deleted in new
chr19	48110486	48110746	ENSG00000105499.13|PLA2G4C|pc|chr19:48110486:48110746:-	0	-
#Deleted in new
chr19	48110486	48110767	ENSG00000105499.13|PLA2G4C|pc|chr19:48110486:48110767:-	0	-
#Deleted in new
chr19	48110486	48110782	ENSG00000105499.13|PLA2G4C|pc|chr19:48110486:48110782:-	0	-
#Deleted in new
chr19	48110486	48110812	ENSG00000105499.13|PLA2G4C|pc|chr19:48110486:48110812:-	0	-
#Deleted in new
chr19	48110486	48110813	ENSG00000105499.13|PLA2G4C|pc|chr19:48110486:48110813:-	0	-
#Deleted in new
chr19	48110486	48110817	ENSG00000105499.13|PLA2G4C|pc|chr19:48110486:48110817:-	0	-
#Deleted in new
chr19	48118431	48118500	ENSG00000269534.5|AC011466.3|lncRNA|chr19:48118431:48118500:+	0	+
#Deleted in new
chr19	48118437	48118500	ENSG00000269534.5|AC011466.3|lncRNA|chr19:48118437:48118500:+	0	+
#Partially deleted in new
chr19	48120166	48121322	ENSG00000105486.13|LIG1|pc|chr19:48120166:48121322:-	0	-
#Deleted in new
chr19	48145907	48146118	ENSG00000269321.1|AC011466.2|lncRNA|chr19:48145907:48146118:+	0	+
#Deleted in new
chr19	48147265	48147413	ENSG00000269321.1|AC011466.2|lncRNA|chr19:48147265:48147413:+	0	+
#Deleted in new
chr19	48154392	48154564	ENSG00000105486.13|LIG1|pc|chr19:48154392:48154564:-	0	-
#Deleted in new
chr19	48169608	48169689	ENSG00000105486.13|LIG1|pc|chr19:48169608:48169689:-	0	-
#Deleted in new
chr19	48187677	48187770	ENSG00000105483.17|CARD8|pc|chr19:48187677:48187770:-	0	-
#Deleted in new
chr19	48189442	48189565	ENSG00000105483.17|CARD8|pc|chr19:48189442:48189565:-	0	-
#Deleted in new
chr19	48190495	48190600	ENSG00000105483.17|CARD8|pc|chr19:48190495:48190600:-	0	-
#Deleted in new
chr19	48191913	48191982	ENSG00000105483.17|CARD8|pc|chr19:48191913:48191982:-	0	-
#Deleted in new
chr19	48193016	48193181	ENSG00000105483.17|CARD8|pc|chr19:48193016:48193181:-	0	-
#Deleted in new
chr19	48198106	48199720	ENSG00000280353.1|AC011466.4|lncRNA|chr19:48198106:48199720:-	0	-
#Partially deleted in new
chr19	48204082	48204222	ENSG00000268583.1|AC011466.1|lncRNA|chr19:48204082:48204222:+	0	+
#Deleted in new
chr19	48206383	48206520	ENSG00000105483.17|CARD8|pc|chr19:48206383:48206520:-	0	-
#Partially deleted in new
chr19	48208085	48211975	ENSG00000105483.17|CARD8|pc|chr19:48208085:48211975:-	0	-
#Partially deleted in new
chr19	48208103	48211975	ENSG00000105483.17|CARD8|pc|chr19:48208103:48211975:-	0	-
#Partially deleted in new
chr19	48209643	48211975	ENSG00000105483.17|CARD8|pc|chr19:48209643:48211975:-	0	-
#Deleted in new
chr19	48210179	48210416	ENSG00000268583.1|AC011466.1|lncRNA|chr19:48210179:48210416:+	0	+
#Deleted in new
chr19	48210486	48211975	ENSG00000105483.17|CARD8|pc|chr19:48210486:48211975:-	0	-
#Deleted in new
chr19	48210786	48211975	ENSG00000105483.17|CARD8|pc|chr19:48210786:48211975:-	0	-
#Deleted in new
chr19	48210789	48211975	ENSG00000105483.17|CARD8|pc|chr19:48210789:48211975:-	0	-
#Deleted in new
chr19	48211151	48211975	ENSG00000105483.17|CARD8|pc|chr19:48211151:48211975:-	0	-
#Deleted in new
chr19	48211376	48211975	ENSG00000105483.17|CARD8|pc|chr19:48211376:48211975:-	0	-
#Deleted in new
chr19	48211565	48211975	ENSG00000105483.17|CARD8|pc|chr19:48211565:48211975:-	0	-
#Deleted in new
chr19	48211616	48211975	ENSG00000105483.17|CARD8|pc|chr19:48211616:48211975:-	0	-
#Deleted in new
chr19	48211826	48211975	ENSG00000105483.17|CARD8|pc|chr19:48211826:48211975:-	0	-
#Deleted in new
chr19	48211896	48211975	ENSG00000105483.17|CARD8|pc|chr19:48211896:48211975:-	0	-
#Deleted in new
chr19	48212965	48213154	ENSG00000268583.1|AC011466.1|lncRNA|chr19:48212965:48213154:+	0	+
#Deleted in new
chr19	48215137	48215384	ENSG00000105483.17|CARD8|pc|chr19:48215137:48215384:-	0	-
#Deleted in new
chr19	48215339	48215384	ENSG00000105483.17|CARD8|pc|chr19:48215339:48215384:-	0	-
#Deleted in new
chr19	48223718	48223868	ENSG00000105483.17|CARD8|pc|chr19:48223718:48223868:-	0	-
#Deleted in new
chr19	48231659	48231810	ENSG00000105483.17|CARD8|pc|chr19:48231659:48231810:-	0	-
#Deleted in new
chr19	48231659	48232114	ENSG00000105483.17|CARD8|pc|chr19:48231659:48232114:-	0	-
#Deleted in new
chr19	48231728	48231810	ENSG00000105483.17|CARD8|pc|chr19:48231728:48231810:-	0	-
#Deleted in new
chr19	48232452	48232493	ENSG00000105483.17|CARD8|pc|chr19:48232452:48232493:-	0	-
#Deleted in new
chr19	48232452	48232789	ENSG00000105483.17|CARD8|pc|chr19:48232452:48232789:-	0	-
#Deleted in new
chr19	48232452	48234543	ENSG00000105483.17|CARD8|pc|chr19:48232452:48234543:-	0	-
#Deleted in new
chr19	48233271	48233404	ENSG00000105483.17|CARD8|pc|chr19:48233271:48233404:-	0	-
#Deleted in new
chr19	48233409	48233980	ENSG00000105483.17|CARD8|pc|chr19:48233409:48233980:-	0	-
#Deleted in new
chr19	48233820	48234543	ENSG00000105483.17|CARD8|pc|chr19:48233820:48234543:-	0	-
#Deleted in new
chr19	48233845	48233980	ENSG00000105483.17|CARD8|pc|chr19:48233845:48233980:-	0	-
#Deleted in new
chr19	48234277	48234543	ENSG00000105483.17|CARD8|pc|chr19:48234277:48234543:-	0	-
#Deleted in new
chr19	48234402	48234464	ENSG00000105483.17|CARD8|pc|chr19:48234402:48234464:-	0	-
#Deleted in new
chr19	48234402	48234543	ENSG00000105483.17|CARD8|pc|chr19:48234402:48234543:-	0	-
#Deleted in new
chr19	48234471	48234543	ENSG00000105483.17|CARD8|pc|chr19:48234471:48234543:-	0	-
#Deleted in new
chr19	48238261	48238532	ENSG00000105483.17|CARD8|pc|chr19:48238261:48238532:-	0	-
#Deleted in new
chr19	48238333	48238532	ENSG00000105483.17|CARD8|pc|chr19:48238333:48238532:-	0	-
#Deleted in new
chr19	48238335	48238532	ENSG00000105483.17|CARD8|pc|chr19:48238335:48238532:-	0	-
#Deleted in new
chr19	48238382	48238526	ENSG00000105483.17|CARD8|pc|chr19:48238382:48238526:-	0	-
#Deleted in new
chr19	48238382	48238532	ENSG00000105483.17|CARD8|pc|chr19:48238382:48238532:-	0	-
#Deleted in new
chr19	48238474	48238532	ENSG00000105483.17|CARD8|pc|chr19:48238474:48238532:-	0	-
#Deleted in new
chr19	48240961	48241063	ENSG00000105483.17|CARD8|pc|chr19:48240961:48241063:-	0	-
#Deleted in new
chr19	48242539	48242644	ENSG00000105483.17|CARD8|pc|chr19:48242539:48242644:-	0	-
#Deleted in new
chr19	48249522	48249614	ENSG00000105483.17|CARD8|pc|chr19:48249522:48249614:-	0	-
#Deleted in new
chr19	48249522	48249633	ENSG00000105483.17|CARD8|pc|chr19:48249522:48249633:-	0	-
#Deleted in new
chr19	48249522	48249668	ENSG00000105483.17|CARD8|pc|chr19:48249522:48249668:-	0	-
#Deleted in new
chr19	48249522	48249771	ENSG00000105483.17|CARD8|pc|chr19:48249522:48249771:-	0	-
#Deleted in new
chr19	48249750	48249810	ENSG00000105483.17|CARD8|pc|chr19:48249750:48249810:-	0	-
#Deleted in new
chr19	48249750	48249816	ENSG00000105483.17|CARD8|pc|chr19:48249750:48249816:-	0	-
#Deleted in new
chr19	48249750	48249826	ENSG00000105483.17|CARD8|pc|chr19:48249750:48249826:-	0	-
#Deleted in new
chr19	48249750	48249828	ENSG00000105483.17|CARD8|pc|chr19:48249750:48249828:-	0	-
#Deleted in new
chr19	48249750	48249833	ENSG00000105483.17|CARD8|pc|chr19:48249750:48249833:-	0	-
#Deleted in new
chr19	48249750	48249847	ENSG00000105483.17|CARD8|pc|chr19:48249750:48249847:-	0	-
#Deleted in new
chr19	48249750	48249878	ENSG00000105483.17|CARD8|pc|chr19:48249750:48249878:-	0	-
#Deleted in new
chr19	48255674	48255794	ENSG00000268001.1|CARD8-AS1|lncRNA|chr19:48255674:48255794:+	0	+
#Deleted in new
chr19	48255791	48255871	ENSG00000105483.17|CARD8|pc|chr19:48255791:48255871:-	0	-
#Deleted in new
chr19	48255791	48255886	ENSG00000105483.17|CARD8|pc|chr19:48255791:48255886:-	0	-
#Deleted in new
chr19	48255791	48255889	ENSG00000105483.17|CARD8|pc|chr19:48255791:48255889:-	0	-
#Deleted in new
chr19	48255791	48255893	ENSG00000105483.17|CARD8|pc|chr19:48255791:48255893:-	0	-
#Deleted in new
chr19	48255791	48255897	ENSG00000105483.17|CARD8|pc|chr19:48255791:48255897:-	0	-
#Deleted in new
chr19	48255791	48255898	ENSG00000105483.17|CARD8|pc|chr19:48255791:48255898:-	0	-
#Deleted in new
chr19	48255791	48255911	ENSG00000105483.17|CARD8|pc|chr19:48255791:48255911:-	0	-
#Deleted in new
chr19	48255791	48255946	ENSG00000105483.17|CARD8|pc|chr19:48255791:48255946:-	0	-
#Deleted in new
chr19	48256350	48258199	ENSG00000268001.1|CARD8-AS1|lncRNA|chr19:48256350:48258199:+	0	+
#Deleted in new
chr1	94825832	94825942	ENSG00000143036.16|SLC44A3|pc|chr1:94825832:94825942:+	0	+
#Deleted in new
chr19	48262899	48263184	ENSG00000268186.1|AC008392.1|lncRNA|chr19:48262899:48263184:-	0	-
#Deleted in new
chr19	48270101	48270219	ENSG00000178150.9|ZNF114|pc|chr19:48270101:48270219:+	0	+
#Deleted in new
chr19	48270144	48270233	ENSG00000268186.1|AC008392.1|lncRNA|chr19:48270144:48270233:-	0	-
#Deleted in new
chr19	48271055	48271119	ENSG00000178150.9|ZNF114|pc|chr19:48271055:48271119:+	0	+
#Deleted in new
chr19	48271220	48271283	ENSG00000268186.1|AC008392.1|lncRNA|chr19:48271220:48271283:-	0	-
#Deleted in new
chr19	48271244	48271449	ENSG00000178150.9|ZNF114|pc|chr19:48271244:48271449:+	0	+
#Deleted in new
chr19	48271286	48271449	ENSG00000178150.9|ZNF114|pc|chr19:48271286:48271449:+	0	+
#Deleted in new
chr19	48271371	48271449	ENSG00000178150.9|ZNF114|pc|chr19:48271371:48271449:+	0	+
#Deleted in new
chr19	48271381	48271449	ENSG00000178150.9|ZNF114|pc|chr19:48271381:48271449:+	0	+
#Deleted in new
chr19	48271396	48271449	ENSG00000178150.9|ZNF114|pc|chr19:48271396:48271449:+	0	+
#Deleted in new
chr19	48271622	48271828	ENSG00000178150.9|ZNF114|pc|chr19:48271622:48271828:+	0	+
#Deleted in new
chr19	48271726	48271828	ENSG00000178150.9|ZNF114|pc|chr19:48271726:48271828:+	0	+
#Deleted in new
chr19	48271748	48271828	ENSG00000178150.9|ZNF114|pc|chr19:48271748:48271828:+	0	+
#Deleted in new
chr19	48279730	48279808	ENSG00000178150.9|ZNF114|pc|chr19:48279730:48279808:+	0	+
#Deleted in new
chr19	48281551	48281689	ENSG00000178150.9|ZNF114|pc|chr19:48281551:48281689:+	0	+
#Deleted in new
chr19	48285760	48285776	ENSG00000178150.9|ZNF114|pc|chr19:48285760:48285776:+	0	+
#Deleted in new
chr19	48285760	48285828	ENSG00000178150.9|ZNF114|pc|chr19:48285760:48285828:+	0	+
#Deleted in new
chr19	48285760	48285881	ENSG00000178150.9|ZNF114|pc|chr19:48285760:48285881:+	0	+
#Deleted in new
chr19	48300999	48301097	ENSG00000105479.15|CCDC114|pc|chr19:48300999:48301097:-	0	-
#Deleted in new
chr19	4831613	4831704	ENSG00000127666.9|TICAM1|pc|chr19:4831613:4831704:-	0	-
#Partially deleted in new
chr19	48319433	48320075	ENSG00000105479.15|CCDC114|pc|chr19:48319433:48320075:-	0	-
#Partially deleted in new
chr19	48360286	48360568	ENSG00000161558.10|TMEM143|pc|chr19:48360286:48360568:-	0	-
#Deleted in new
chr19	48360318	48360410	ENSG00000161558.10|TMEM143|pc|chr19:48360318:48360410:-	0	-
#Deleted in new
chr19	48360318	48360568	ENSG00000161558.10|TMEM143|pc|chr19:48360318:48360568:-	0	-
#Deleted in new
chr19	4838475	4838907	ENSG00000267484.1|AC027319.1|lncRNA|chr19:4838475:4838907:+	0	+
#Partially deleted in new
chr19	48474837	48476276	ENSG00000105443.14|CYTH2|pc|chr19:48474837:48476276:+	0	+
#Partially deleted in new
chr19	48474837	48478145	ENSG00000105443.14|CYTH2|pc|chr19:48474837:48478145:+	0	+
#Partially deleted in new
chr19	48475099	48476527	ENSG00000105443.14|CYTH2|pc|chr19:48475099:48476527:+	0	+
#Deleted in new
chr19	48476528	48476582	ENSG00000105443.14|CYTH2|pc|chr19:48476528:48476582:+	0	+
#Partially deleted in new
chr19	48479122	48480653	ENSG00000105443.14|CYTH2|pc|chr19:48479122:48480653:+	0	+
#Partially deleted in new
chr19	48479122	48482313	ENSG00000105443.14|CYTH2|pc|chr19:48479122:48482313:+	0	+
#Partially deleted in new
chr19	48479122	48482314	ENSG00000105443.14|CYTH2|pc|chr19:48479122:48482314:+	0	+
#Deleted in new
chr19	48479925	48480088	ENSG00000105443.14|CYTH2|pc|chr19:48479925:48480088:+	0	+
#Deleted in new
chr19	48480749	48480879	ENSG00000105443.14|CYTH2|pc|chr19:48480749:48480879:+	0	+
#Deleted in new
chr19	48481774	48481921	ENSG00000105443.14|CYTH2|pc|chr19:48481774:48481921:+	0	+
#Deleted in new
chr19	48481922	48482313	ENSG00000105443.14|CYTH2|pc|chr19:48481922:48482313:+	0	+
#Deleted in new
chr19	48513139	48513189	ENSG00000142235.8|LMTK3|pc|chr19:48513139:48513189:-	0	-
#Deleted in new
chr19	48591100	48591273	ENSG00000088002.11|SULT2B1|pc|chr19:48591100:48591273:+	0	+
#Partially deleted in new
chr19	48614707	48614815	ENSG00000105523.3|FAM83E|pc|chr19:48614707:48614815:-	0	-
#Partially deleted in new
chr19	48614707	48614841	ENSG00000105523.3|FAM83E|pc|chr19:48614707:48614841:-	0	-
#Deleted in new
chr19	48620388	48620586	ENSG00000268093.1|AC022154.1|lncRNA|chr19:48620388:48620586:-	0	-
#Deleted in new
chr19	48620401	48620553	ENSG00000063176.15|SPHK2|pc|chr19:48620401:48620553:+	0	+
#Deleted in new
chr19	48620503	48620586	ENSG00000268093.1|AC022154.1|lncRNA|chr19:48620503:48620586:-	0	-
#Deleted in new
chr19	48620514	48620553	ENSG00000063176.15|SPHK2|pc|chr19:48620514:48620553:+	0	+
#Deleted in new
chr19	48620798	48620893	ENSG00000268093.1|AC022154.1|lncRNA|chr19:48620798:48620893:-	0	-
#Deleted in new
chr19	48623206	48623401	ENSG00000268093.1|AC022154.1|lncRNA|chr19:48623206:48623401:-	0	-
#Deleted in new
chr19	48623817	48623858	ENSG00000268093.1|AC022154.1|lncRNA|chr19:48623817:48623858:-	0	-
#Partially deleted in new
chr19	4866632	4867112	ENSG00000105355.8|PLIN3|pc|chr19:4866632:4867112:-	0	-
#Deleted in new
chr19	4866879	4866994	ENSG00000105355.8|PLIN3|pc|chr19:4866879:4866994:-	0	-
#Deleted in new
chr19	48695970	48696079	ENSG00000176920.11|FUT2|pc|chr19:48695970:48696079:+	0	+
#Deleted in new
chr19	48695974	48696089	ENSG00000176920.11|FUT2|pc|chr19:48695974:48696089:+	0	+
#Deleted in new
chr19	48696032	48696079	ENSG00000176920.11|FUT2|pc|chr19:48696032:48696079:+	0	+
#Deleted in new
chr19	48696038	48696079	ENSG00000176920.11|FUT2|pc|chr19:48696038:48696079:+	0	+
#Deleted in new
chr19	48696378	48696643	ENSG00000176920.11|FUT2|pc|chr19:48696378:48696643:+	0	+
#Deleted in new
chr19	48705316	48705614	ENSG00000176920.11|FUT2|pc|chr19:48705316:48705614:+	0	+
#Deleted in new
chr19	48738485	48738705	ENSG00000105538.9|RASIP1|pc|chr19:48738485:48738705:-	0	-
#Deleted in new
chr19	48753324	48753563	ENSG00000174951.10|FUT1|pc|chr19:48753324:48753563:-	0	-
#Deleted in new
chr19	48753324	48753660	ENSG00000174951.10|FUT1|pc|chr19:48753324:48753660:-	0	-
#Partially deleted in new
chr19	48796146	48796329	ENSG00000105552.14|BCAT2|pc|chr19:48796146:48796329:-	0	-
#Deleted in new
chr1	94888657	94888692	ENSG00000143036.16|SLC44A3|pc|chr1:94888657:94888692:+	0	+
#Deleted in new
chr19	48889509	48889631	ENSG00000104804.7|TULP2|pc|chr19:48889509:48889631:-	0	-
#Deleted in new
chr19	48889527	48889631	ENSG00000104804.7|TULP2|pc|chr19:48889527:48889631:-	0	-
#Deleted in new
chr1	94889198	94889355	ENSG00000143036.16|SLC44A3|pc|chr1:94889198:94889355:+	0	+
#Deleted in new
chr19	489175	490039	ENSG00000099866.14|MADCAM1|pc|chr19:489175:490039:+	0	+
#Deleted in new
chr19	48926170	48926444	ENSG00000260366.1|AC026803.1|lncRNA|chr19:48926170:48926444:+	0	+
#Deleted in new
chr19	48960238	48960336	ENSG00000087088.19|BAX|pc|chr19:48960238:48960336:+	0	+
#Partially deleted in new
chr19	48963974	48964364	ENSG00000267898.1|AC026803.2|lncRNA|chr19:48963974:48964364:+	0	+
#Deleted in new
chr19	48963989	48964491	ENSG00000267898.1|AC026803.2|lncRNA|chr19:48963989:48964491:+	0	+
#Deleted in new
chr19	48994175	48994341	ENSG00000183207.13|RUVBL2|pc|chr19:48994175:48994341:+	0	+
#Deleted in new
chr19	48994504	48994933	ENSG00000183207.13|RUVBL2|pc|chr19:48994504:48994933:+	0	+
#Deleted in new
chr19	48994779	48994933	ENSG00000183207.13|RUVBL2|pc|chr19:48994779:48994933:+	0	+
#Deleted in new
chr19	49001348	49001401	ENSG00000183207.13|RUVBL2|pc|chr19:49001348:49001401:+	0	+
#Deleted in new
chr19	49001348	49001590	ENSG00000183207.13|RUVBL2|pc|chr19:49001348:49001590:+	0	+
#Deleted in new
chr19	490045	490353	ENSG00000266933.2|AC005775.1|lncRNA|chr19:490045:490353:-	0	-
#Deleted in new
chr19	4903079	4903645	ENSG00000276043.4|UHRF1|pc|chr19:4903079:4903645:+	0	+
#Partially deleted in new
chr19	49031977	49032104	ENSG00000104818.14|CGB2|pc|chr19:49031977:49032104:+	0	+
#Partially deleted in new
chr19	49036702	49036816	ENSG00000267631.4|CGB1|pc|chr19:49036702:49036816:-	0	-
#Partially deleted in new
chr19	49036702	49036885	ENSG00000267335.2|AC008687.1|pc|chr19:49036702:49036885:-	0	-
#Split in new
chr19	49057120	49058057	ENSG00000196337.11|CGB7|pc|chr19:49057120:49058057:-	0	-
#Deleted in new
chr19	49057664	49057751	ENSG00000196337.11|CGB7|pc|chr19:49057664:49057751:-	0	-
#Partially deleted in new
chr19	49060612	49061132	ENSG00000268108.1|AC008687.2|lncRNA|chr19:49060612:49061132:+	0	+
#Partially deleted in new
chr19	49115824	49116024	ENSG00000104863.11|LIN7B|pc|chr19:49115824:49116024:+	0	+
#Deleted in new
chr19	49305756	49306132	ENSG00000063127.15|SLC6A16|pc|chr19:49305756:49306132:-	0	-
#Deleted in new
chr19	49305884	49306132	ENSG00000063127.15|SLC6A16|pc|chr19:49305884:49306132:-	0	-
#Deleted in new
chr19	49306084	49306132	ENSG00000063127.15|SLC6A16|pc|chr19:49306084:49306132:-	0	-
#Deleted in new
chr1	94931871	94931985	ENSG00000235501.5|AC105942.1|lncRNA|chr1:94931871:94931985:+	0	+
#Deleted in new
chr19	49331616	49331832	ENSG00000197813.5|AC011450.1|lncRNA|chr19:49331616:49331832:-	0	-
#Deleted in new
chr19	49331658	49331832	ENSG00000197813.5|AC011450.1|lncRNA|chr19:49331658:49331832:-	0	-
#Deleted in new
chr19	49332053	49332296	ENSG00000197813.5|AC011450.1|lncRNA|chr19:49332053:49332296:-	0	-
#Deleted in new
chr19	49332053	49332320	ENSG00000197813.5|AC011450.1|lncRNA|chr19:49332053:49332320:-	0	-
#Deleted in new
chr19	49348956	49349059	ENSG00000074219.13|TEAD2|pc|chr19:49348956:49349059:-	0	-
#Partially deleted in new
chr19	49357390	49357769	ENSG00000268157.1|AC010524.1|lncRNA|chr19:49357390:49357769:+	0	+
#Deleted in new
chr19	49368704	49371143	ENSG00000268686.1|AC010643.1|lncRNA|chr19:49368704:49371143:-	0	-
#Deleted in new
chr19	49382850	49382948	ENSG00000268686.1|AC010643.1|lncRNA|chr19:49382850:49382948:-	0	-
#Partially deleted in new
chr19	49387355	49388081	ENSG00000268686.1|AC010643.1|lncRNA|chr19:49387355:49388081:-	0	-
#Partially deleted in new
chr19	49389560	49390338	ENSG00000161609.9|CCDC155|pc|chr19:49389560:49390338:+	0	+
#Deleted in new
chr19	49391680	49391781	ENSG00000161609.9|CCDC155|pc|chr19:49391680:49391781:+	0	+
#Deleted in new
chr19	49391685	49391781	ENSG00000161609.9|CCDC155|pc|chr19:49391685:49391781:+	0	+
#Deleted in new
chr19	49393345	49393400	ENSG00000161609.9|CCDC155|pc|chr19:49393345:49393400:+	0	+
#Deleted in new
chr19	49393345	49393419	ENSG00000161609.9|CCDC155|pc|chr19:49393345:49393419:+	0	+
#Partially deleted in new
chr19	49393345	49393743	ENSG00000161609.9|CCDC155|pc|chr19:49393345:49393743:+	0	+
#Deleted in new
chr19	49408272	49408297	ENSG00000161609.9|CCDC155|pc|chr19:49408272:49408297:+	0	+
#Deleted in new
chr19	49442277	49442360	ENSG00000104888.9|SLC17A7|pc|chr19:49442277:49442360:-	0	-
#Partially deleted in new
chr19	49480551	49481581	ENSG00000090554.12|FLT3LG|pc|chr19:49480551:49481581:+	0	+
#Deleted in new
chr19	49481874	49482391	ENSG00000090554.12|FLT3LG|pc|chr19:49481874:49482391:+	0	+
#Partially deleted in new
chr19	49491728	49492301	ENSG00000142541.16|RPL13A|pc|chr19:49491728:49492301:+	0	+
#Partially deleted in new
chr19	49491728	49492305	ENSG00000142541.16|RPL13A|pc|chr19:49491728:49492305:+	0	+
#Partially deleted in new
chr19	49491728	49492308	ENSG00000142541.16|RPL13A|pc|chr19:49491728:49492308:+	0	+
#Deleted in new
chr19	49506815	49506924	ENSG00000104870.12|FCGRT|pc|chr19:49506815:49506924:+	0	+
#Deleted in new
chr19	49512374	49512514	ENSG00000104870.12|FCGRT|pc|chr19:49512374:49512514:+	0	+
#Deleted in new
chr19	49516113	49516199	ENSG00000104870.12|FCGRT|pc|chr19:49516113:49516199:+	0	+
#Deleted in new
chr19	49520668	49521201	ENSG00000104870.12|FCGRT|pc|chr19:49520668:49521201:+	0	+
#Deleted in new
chr19	49521694	49521813	ENSG00000104870.12|FCGRT|pc|chr19:49521694:49521813:+	0	+
#Deleted in new
chr19	49539118	49539179	ENSG00000142552.7|RCN3|pc|chr19:49539118:49539179:+	0	+
#Deleted in new
chr19	49546820	49546962	ENSG00000142552.7|RCN3|pc|chr19:49546820:49546962:+	0	+
#Partially deleted in new
chr19	49557089	49557945	ENSG00000142546.13|NOSIP|pc|chr19:49557089:49557945:-	0	-
#Partially deleted in new
chr19	49557089	49558199	ENSG00000142546.13|NOSIP|pc|chr19:49557089:49558199:-	0	-
#Partially deleted in new
chr19	49557089	49558978	ENSG00000142546.13|NOSIP|pc|chr19:49557089:49558978:-	0	-
#Deleted in new
chr19	49557272	49557945	ENSG00000142546.13|NOSIP|pc|chr19:49557272:49557945:-	0	-
#Deleted in new
chr19	49557876	49557945	ENSG00000142546.13|NOSIP|pc|chr19:49557876:49557945:-	0	-
#Deleted in new
chr19	49558061	49558199	ENSG00000142546.13|NOSIP|pc|chr19:49558061:49558199:-	0	-
#Partially deleted in new
chr19	49559210	49560039	ENSG00000142546.13|NOSIP|pc|chr19:49559210:49560039:-	0	-
#Deleted in new
chr19	49579140	49579278	ENSG00000142546.13|NOSIP|pc|chr19:49579140:49579278:-	0	-
#Deleted in new
chr19	49661449	49661524	ENSG00000126456.15|IRF3|pc|chr19:49661449:49661524:-	0	-
#Deleted in new
chr19	49661594	49661625	ENSG00000126456.15|IRF3|pc|chr19:49661594:49661625:-	0	-
#Partially deleted in new
chr19	49664552	49664673	ENSG00000126456.15|IRF3|pc|chr19:49664552:49664673:-	0	-
#Partially deleted in new
chr19	49664586	49664673	ENSG00000126456.15|IRF3|pc|chr19:49664586:49664673:-	0	-
#Deleted in new
chr19	49672108	49672201	ENSG00000126453.9|BCL2L12|pc|chr19:49672108:49672201:+	0	+
#Partially deleted in new
chr19	49675896	49676260	ENSG00000126457.21|PRMT1|pc|chr19:49675896:49676260:+	0	+
#Partially deleted in new
chr19	49678224	49678272	ENSG00000126457.21|PRMT1|pc|chr19:49678224:49678272:+	0	+
#Deleted in new
chr19	49685161	49685555	ENSG00000126457.21|PRMT1|pc|chr19:49685161:49685555:+	0	+
#Deleted in new
chr19	49685304	49685639	ENSG00000126457.21|PRMT1|pc|chr19:49685304:49685639:+	0	+
#Deleted in new
chr19	49687852	49687952	ENSG00000126457.21|PRMT1|pc|chr19:49687852:49687952:+	0	+
#Partially deleted in new
chr19	49688161	49689029	ENSG00000126457.21|PRMT1|pc|chr19:49688161:49689029:+	0	+
#Deleted in new
chr19	49688663	49689911	ENSG00000224420.3|ADM5|pc|chr19:49688663:49689911:+	0	+
#Deleted in new
chr19	49688852	49689023	ENSG00000268677.1|AC011495.3|lncRNA|chr19:49688852:49689023:-	0	-
#Deleted in new
chr19	49690105	49690575	ENSG00000224420.3|ADM5|pc|chr19:49690105:49690575:+	0	+
#Deleted in new
chr19	49690317	49690573	ENSG00000268677.1|AC011495.3|lncRNA|chr19:49690317:49690573:-	0	-
#Deleted in new
chr19	49690897	49690997	ENSG00000169169.14|CPT1C|pc|chr19:49690897:49690997:+	0	+
#Deleted in new
chr19	49696481	49696583	ENSG00000169169.14|CPT1C|pc|chr19:49696481:49696583:+	0	+
#Deleted in new
chr19	49696481	49696602	ENSG00000169169.14|CPT1C|pc|chr19:49696481:49696602:+	0	+
#Partially deleted in new
chr19	49747146	49747378	ENSG00000126467.10|TSKS|pc|chr19:49747146:49747378:-	0	-
#Deleted in new
chr19	49796102	49797562	ENSG00000196961.12|AP2A1|pc|chr19:49796102:49797562:+	0	+
#Duplicated in new
chr19	49800691	49801058	ENSG00000196961.12|AP2A1|pc|chr19:49800691:49801058:+	0	+
#Partially deleted in new
chr19	49819171	49819950	ENSG00000104973.16|MED25|pc|chr19:49819171:49819950:+	0	+
#Partially deleted in new
chr19	49832883	49835177	ENSG00000104973.16|MED25|pc|chr19:49832883:49835177:+	0	+
#Deleted in new
chr19	49844315	49844598	ENSG00000268006.1|PTOV1-AS1|lncRNA|chr19:49844315:49844598:-	0	-
#Deleted in new
chr19	49844315	49844892	ENSG00000268006.1|PTOV1-AS1|lncRNA|chr19:49844315:49844892:-	0	-
#Deleted in new
chr19	49846722	49846753	ENSG00000268006.1|PTOV1-AS1|lncRNA|chr19:49846722:49846753:-	0	-
#Partially deleted in new
chr19	49849009	49851057	ENSG00000268006.1|PTOV1-AS1|lncRNA|chr19:49849009:49851057:-	0	-
#Partially deleted in new
chr19	49852059	49852696	ENSG00000104960.15|PTOV1|pc|chr19:49852059:49852696:+	0	+
#Deleted in new
chr19	49852886	49853209	ENSG00000268047.1|AC018766.1|lncRNA|chr19:49852886:49853209:-	0	-
#Partially deleted in new
chr19	49854969	49855644	ENSG00000104960.15|PTOV1|pc|chr19:49854969:49855644:+	0	+
#Partially deleted in new
chr19	49855054	49855311	ENSG00000104960.15|PTOV1|pc|chr19:49855054:49855311:+	0	+
#Partially deleted in new
chr19	49856135	49857130	ENSG00000104960.15|PTOV1|pc|chr19:49856135:49857130:+	0	+
#Partially deleted in new
chr19	49858153	49858427	ENSG00000269352.1|PTOV1-AS2|lncRNA|chr19:49858153:49858427:-	0	-
#Deleted in new
chr19	49858842	49859026	ENSG00000269352.1|PTOV1-AS2|lncRNA|chr19:49858842:49859026:-	0	-
#Deleted in new
chr19	49858842	49859097	ENSG00000269352.1|PTOV1-AS2|lncRNA|chr19:49858842:49859097:-	0	-
#Deleted in new
chr19	49858842	49859287	ENSG00000269352.1|PTOV1-AS2|lncRNA|chr19:49858842:49859287:-	0	-
#Deleted in new
chr19	49859205	49859289	ENSG00000269352.1|PTOV1-AS2|lncRNA|chr19:49859205:49859289:-	0	-
#Deleted in new
chr19	49862800	49862821	ENSG00000039650.11|PNKP|pc|chr19:49862800:49862821:-	0	-
#Partially deleted in new
chr19	49865953	49866445	ENSG00000039650.11|PNKP|pc|chr19:49865953:49866445:-	0	-
#Partially deleted in new
chr19	49866031	49866445	ENSG00000039650.11|PNKP|pc|chr19:49866031:49866445:-	0	-
#Deleted in new
chr19	49867468	49867532	ENSG00000039650.11|PNKP|pc|chr19:49867468:49867532:-	0	-
#Deleted in new
chr19	49867468	49867533	ENSG00000039650.11|PNKP|pc|chr19:49867468:49867533:-	0	-
#Deleted in new
chr19	49867468	49867555	ENSG00000039650.11|PNKP|pc|chr19:49867468:49867555:-	0	-
#Deleted in new
chr19	49867468	49867561	ENSG00000039650.11|PNKP|pc|chr19:49867468:49867561:-	0	-
#Deleted in new
chr19	49867468	49867564	ENSG00000039650.11|PNKP|pc|chr19:49867468:49867564:-	0	-
#Deleted in new
chr19	49867468	49867576	ENSG00000039650.11|PNKP|pc|chr19:49867468:49867576:-	0	-
#Deleted in new
chr19	49867468	49867886	ENSG00000039650.11|PNKP|pc|chr19:49867468:49867886:-	0	-
#Deleted in new
chr19	49867494	49867588	ENSG00000039650.11|PNKP|pc|chr19:49867494:49867588:-	0	-
#Deleted in new
chr19	49867678	49867701	ENSG00000039650.11|PNKP|pc|chr19:49867678:49867701:-	0	-
#Deleted in new
chr19	49867678	49867880	ENSG00000039650.11|PNKP|pc|chr19:49867678:49867880:-	0	-
#Deleted in new
chr19	49867678	49867909	ENSG00000039650.11|PNKP|pc|chr19:49867678:49867909:-	0	-
#Partially deleted in new
chr19	49872916	49875285	ENSG00000204673.10|AKT1S1|pc|chr19:49872916:49875285:-	0	-
#Partially deleted in new
chr19	49873469	49873800	ENSG00000204673.10|AKT1S1|pc|chr19:49873469:49873800:-	0	-
#Partially deleted in new
chr19	49875873	49876249	ENSG00000204673.10|AKT1S1|pc|chr19:49875873:49876249:-	0	-
#Partially deleted in new
chr19	49878549	49879504	ENSG00000104946.12|TBC1D17|pc|chr19:49878549:49879504:+	0	+
#Deleted in new
chr19	49879322	49879504	ENSG00000104946.12|TBC1D17|pc|chr19:49879322:49879504:+	0	+
#Deleted in new
chr19	49885171	49885534	ENSG00000104946.12|TBC1D17|pc|chr19:49885171:49885534:+	0	+
#Partially deleted in new
chr19	49886550	49887573	ENSG00000104946.12|TBC1D17|pc|chr19:49886550:49887573:+	0	+
#Deleted in new
chr19	498870	498873	ENSG00000099866.14|MADCAM1|pc|chr19:498870:498873:+	0	+
#Deleted in new
chr19	498874	498883	ENSG00000099866.14|MADCAM1|pc|chr19:498874:498883:+	0	+
#Deleted in new
chr19	49896834	49896868	ENSG00000104951.15|IL4I1|pc|chr19:49896834:49896868:-	0	-
#Deleted in new
chr19	499037	499049	ENSG00000099866.14|MADCAM1|pc|chr19:499037:499049:+	0	+
#Deleted in new
chr19	49911060	49911366	ENSG00000213024.11|NUP62|pc|chr19:49911060:49911366:-	0	-
#Deleted in new
chr19	49911104	49911231	ENSG00000213024.11|NUP62|pc|chr19:49911104:49911231:-	0	-
#Deleted in new
chr19	49911104	49911343	ENSG00000213024.11|NUP62|pc|chr19:49911104:49911343:-	0	-
#Deleted in new
chr19	49911104	49911366	ENSG00000213024.11|NUP62|pc|chr19:49911104:49911366:-	0	-
#Deleted in new
chr19	49911104	49911370	ENSG00000213024.11|NUP62|pc|chr19:49911104:49911370:-	0	-
#Deleted in new
chr19	49911172	49911343	ENSG00000213024.11|NUP62|pc|chr19:49911172:49911343:-	0	-
#Deleted in new
chr19	49911235	49911366	ENSG00000213024.11|NUP62|pc|chr19:49911235:49911366:-	0	-
#Deleted in new
chr19	49911318	49911366	ENSG00000213024.11|NUP62|pc|chr19:49911318:49911366:-	0	-
#Deleted in new
chr19	49912898	49913090	ENSG00000213024.11|NUP62|pc|chr19:49912898:49913090:-	0	-
#Deleted in new
chr19	49912898	49913159	ENSG00000213024.11|NUP62|pc|chr19:49912898:49913159:-	0	-
#Deleted in new
chr19	49912938	49913159	ENSG00000213024.11|NUP62|pc|chr19:49912938:49913159:-	0	-
#Deleted in new
chr19	49917607	49917641	ENSG00000213024.11|NUP62|pc|chr19:49917607:49917641:-	0	-
#Deleted in new
chr19	49917607	49917661	ENSG00000213024.11|NUP62|pc|chr19:49917607:49917661:-	0	-
#Deleted in new
chr19	49917607	49917812	ENSG00000213024.11|NUP62|pc|chr19:49917607:49917812:-	0	-
#Deleted in new
chr19	49918507	49918621	ENSG00000213024.11|NUP62|pc|chr19:49918507:49918621:-	0	-
#Partially deleted in new
chr19	49928701	49929006	ENSG00000169136.10|ATF5|pc|chr19:49928701:49929006:+	0	+
#Partially deleted in new
chr19	49948984	49950236	ENSG00000161640.15|SIGLEC11|pc|chr19:49948984:49950236:-	0	-
#Partially deleted in new
chr19	49949299	49950236	ENSG00000161640.15|SIGLEC11|pc|chr19:49949299:49950236:-	0	-
#Partially deleted in new
chr19	49978568	49979242	ENSG00000105053.10|VRK3|pc|chr19:49978568:49979242:-	0	-
#Deleted in new
chr19	499814	499848	ENSG00000099866.14|MADCAM1|pc|chr19:499814:499848:+	0	+
#Partially deleted in new
chr19	49981653	49982188	ENSG00000105053.10|VRK3|pc|chr19:49981653:49982188:-	0	-
#Partially deleted in new
chr19	49981699	49982188	ENSG00000105053.10|VRK3|pc|chr19:49981699:49982188:-	0	-
#Deleted in new
chr19	49986298	49986544	ENSG00000105053.10|VRK3|pc|chr19:49986298:49986544:-	0	-
#Deleted in new
chr19	49986741	49986933	ENSG00000105053.10|VRK3|pc|chr19:49986741:49986933:-	0	-
#Partially deleted in new
chr19	49997001	49999198	ENSG00000105053.10|VRK3|pc|chr19:49997001:49999198:-	0	-
#Partially deleted in new
chr19	49999267	50001377	ENSG00000105053.10|VRK3|pc|chr19:49999267:50001377:-	0	-
#Deleted in new
chr19	500047	500070	ENSG00000099866.14|MADCAM1|pc|chr19:500047:500070:+	0	+
#Deleted in new
chr19	50008755	50008811	ENSG00000105053.10|VRK3|pc|chr19:50008755:50008811:-	0	-
#Deleted in new
chr19	500111	500159	ENSG00000099866.14|MADCAM1|pc|chr19:500111:500159:+	0	+
#Deleted in new
chr19	50015731	50015793	ENSG00000105053.10|VRK3|pc|chr19:50015731:50015793:-	0	-
#Deleted in new
chr19	50040533	50040629	ENSG00000142528.15|ZNF473|pc|chr19:50040533:50040629:+	0	+
#Deleted in new
chr19	50043195	50043428	ENSG00000269091.5|AC010624.3|lncRNA|chr19:50043195:50043428:-	0	-
#Deleted in new
chr19	50043317	50043428	ENSG00000269091.5|AC010624.3|lncRNA|chr19:50043317:50043428:-	0	-
#Deleted in new
chr19	50050588	50051194	ENSG00000204666.3|AC010624.1|lncRNA|chr19:50050588:50051194:+	0	+
#Deleted in new
chr19	50050867	50051035	ENSG00000269091.5|AC010624.3|lncRNA|chr19:50050867:50051035:-	0	-
#Deleted in new
chr19	50050881	50051062	ENSG00000269091.5|AC010624.3|lncRNA|chr19:50050881:50051062:-	0	-
#Deleted in new
chr19	50053189	50053414	ENSG00000142528.15|ZNF473|pc|chr19:50053189:50053414:+	0	+
#Partially deleted in new
chr19	50066074	50066793	ENSG00000204666.3|AC010624.1|lncRNA|chr19:50066074:50066793:+	0	+
#Deleted in new
chr1	9501091	9501548	ENSG00000235263.1|AL928921.1|lncRNA|chr1:9501091:9501548:-	0	-
#Deleted in new
chr19	50153676	50153806	ENSG00000161652.12|IZUMO2|pc|chr19:50153676:50153806:-	0	-
#Deleted in new
chr19	50159965	50160296	ENSG00000161652.12|IZUMO2|pc|chr19:50159965:50160296:-	0	-
#Deleted in new
chr19	50160458	50160780	ENSG00000161652.12|IZUMO2|pc|chr19:50160458:50160780:-	0	-
#Deleted in new
chr19	5016256	5016339	ENSG00000127663.14|KDM4B|pc|chr19:5016256:5016339:+	0	+
#Deleted in new
chr19	5016324	5016339	ENSG00000127663.14|KDM4B|pc|chr19:5016324:5016339:+	0	+
#Partially deleted in new
chr19	50284763	50286694	ENSG00000105357.15|MYH14|pc|chr19:50284763:50286694:+	0	+
#Partially deleted in new
chr19	50310021	50310172	ENSG00000267815.1|AC008655.1|lncRNA|chr19:50310021:50310172:-	0	-
#Deleted in new
chr19	50310233	50310539	ENSG00000267815.1|AC008655.1|lncRNA|chr19:50310233:50310539:-	0	-
#Deleted in new
chr1	9503220	9503471	ENSG00000235263.1|AL928921.1|lncRNA|chr1:9503220:9503471:-	0	-
#Deleted in new
chr19	50338001	50338076	ENSG00000131408.13|NR1H2|pc|chr19:50338001:50338076:+	0	+
#Deleted in new
chr19	50352490	50352606	ENSG00000131408.13|NR1H2|pc|chr19:50352490:50352606:+	0	+
#Split in new
chr19	50358477	50359862	ENSG00000131400.7|NAPSA|pc|chr19:50358477:50359862:-	0	-
#Deleted in new
chr19	50362623	50362782	ENSG00000131400.7|NAPSA|pc|chr19:50362623:50362782:-	0	-
#Deleted in new
chr19	50369165	50369331	ENSG00000269392.1|AC008655.2|lncRNA|chr19:50369165:50369331:-	0	-
#Deleted in new
chr19	50371354	50371440	ENSG00000131408.13|NR1H2|pc|chr19:50371354:50371440:+	0	+
#Deleted in new
chr19	50372870	50372985	ENSG00000131408.13|NR1H2|pc|chr19:50372870:50372985:+	0	+
#Deleted in new
chr19	50387659	50387804	ENSG00000062822.12|POLD1|pc|chr19:50387659:50387804:+	0	+
#Deleted in new
chr19	50393974	50394063	ENSG00000062822.12|POLD1|pc|chr19:50393974:50394063:+	0	+
#Deleted in new
chr19	50395024	50395150	ENSG00000062822.12|POLD1|pc|chr19:50395024:50395150:+	0	+
#Deleted in new
chr1	95041492	95041612	ENSG00000172339.9|ALG14|pc|chr1:95041492:95041612:-	0	-
#Split in new
chr19	50428037	50431048	ENSG00000269404.6|SPIB|pc|chr19:50428037:50431048:+	0	+
#Split in new
chr19	50428037	50431313	ENSG00000269404.6|SPIB|pc|chr19:50428037:50431313:+	0	+
#Deleted in new
chr19	5046997	5047140	ENSG00000127663.14|KDM4B|pc|chr19:5046997:5047140:+	0	+
#Partially deleted in new
chr19	504744	505207	ENSG00000099866.14|MADCAM1|pc|chr19:504744:505207:+	0	+
#Partially deleted in new
chr19	504744	505340	ENSG00000099866.14|MADCAM1|pc|chr19:504744:505340:+	0	+
#Partially deleted in new
chr19	504744	505342	ENSG00000099866.14|MADCAM1|pc|chr19:504744:505342:+	0	+
#Deleted in new
chr19	50557632	50557969	ENSG00000268231.1|AC008743.1|lncRNA|chr19:50557632:50557969:-	0	-
#Deleted in new
chr19	50621306	50621428	ENSG00000213023.10|SYT3|pc|chr19:50621306:50621428:-	0	-
#Partially deleted in new
chr1	95067043	95067545	ENSG00000230427.1|AC095033.1|lncRNA|chr1:95067043:95067545:+	0	+
#Partially deleted in new
chr19	5070617	5071059	ENSG00000127663.14|KDM4B|pc|chr19:5070617:5071059:+	0	+
#Partially deleted in new
chr19	507499	510372	ENSG00000141933.9|TPGS1|pc|chr19:507499:510372:+	0	+
#Deleted in new
chr19	50776140	50776466	ENSG00000261341.6|AC010325.1|pc|chr19:50776140:50776466:-	0	-
#Deleted in new
chr19	50789617	50789715	ENSG00000261341.6|AC010325.1|pc|chr19:50789617:50789715:-	0	-
#Deleted in new
chr19	50792684	50792791	ENSG00000268375.1|AC010325.2|lncRNA|chr19:50792684:50792791:-	0	-
#Deleted in new
chr19	50793113	50793142	ENSG00000261341.6|AC010325.1|pc|chr19:50793113:50793142:-	0	-
#Deleted in new
chr19	50793431	50793584	ENSG00000268375.1|AC010325.2|lncRNA|chr19:50793431:50793584:-	0	-
#Deleted in new
chr19	50801182	50801349	ENSG00000167747.14|C19orf48|pc|chr19:50801182:50801349:-	0	-
#Partially deleted in new
chr19	50802453	50802614	ENSG00000167747.14|C19orf48|pc|chr19:50802453:50802614:-	0	-
#Deleted in new
chr19	50803552	50803875	ENSG00000167747.14|C19orf48|pc|chr19:50803552:50803875:-	0	-
#Deleted in new
chr19	5080687	5080996	ENSG00000127663.14|KDM4B|pc|chr19:5080687:5080996:+	0	+
#Deleted in new
chr19	50811256	50811327	ENSG00000180279.6|LINC01869|lncRNA|chr19:50811256:50811327:+	0	+
#Deleted in new
chr19	50812721	50812884	ENSG00000180279.6|LINC01869|lncRNA|chr19:50812721:50812884:+	0	+
#Deleted in new
chr19	50837114	50837213	ENSG00000174562.13|KLK15|pc|chr19:50837114:50837213:-	0	-
#Deleted in new
chr19	50850910	50851089	ENSG00000267968.1|AC011523.1|lncRNA|chr19:50850910:50851089:+	0	+
#Duplicated in new
chr19	50857390	50858315	ENSG00000142515.14|KLK3|pc|chr19:50857390:50858315:+	0	+
#Deleted in new
chr19	50875642	50875939	ENSG00000167751.12|KLK2|pc|chr19:50875642:50875939:+	0	+
#Duplicated in new
chr19	50876871	50877221	ENSG00000167751.12|KLK2|pc|chr19:50876871:50877221:+	0	+
#Duplicated in new
chr19	50876884	50877260	ENSG00000167751.12|KLK2|pc|chr19:50876884:50877260:+	0	+
#Duplicated in new
chr19	50876884	50877412	ENSG00000167751.12|KLK2|pc|chr19:50876884:50877412:+	0	+
#Duplicated in new
chr19	50878403	50878790	ENSG00000167751.12|KLK2|pc|chr19:50878403:50878790:+	0	+
#Duplicated in new
chr19	50878403	50878888	ENSG00000167751.12|KLK2|pc|chr19:50878403:50878888:+	0	+
#Split in new
chr19	50878403	50880566	ENSG00000167751.12|KLK2|pc|chr19:50878403:50880566:+	0	+
#Split in new
chr19	50878403	50880567	ENSG00000167751.12|KLK2|pc|chr19:50878403:50880567:+	0	+
#Deleted in new
chr19	50962196	50962781	ENSG00000279676.1|AC011483.4|lncRNA|chr19:50962196:50962781:-	0	-
#Deleted in new
chr19	50973180	50973333	ENSG00000267879.1|AC011483.2|lncRNA|chr19:50973180:50973333:+	0	+
#Deleted in new
chr19	50990948	50991080	ENSG00000267879.1|AC011483.2|lncRNA|chr19:50990948:50991080:+	0	+
#Deleted in new
chr19	50998952	50999235	ENSG00000129455.15|KLK8|pc|chr19:50998952:50999235:-	0	-
#Deleted in new
chr19	51012022	51012129	ENSG00000267879.1|AC011483.2|lncRNA|chr19:51012022:51012129:+	0	+
#Partially deleted in new
chr19	51018454	51018849	ENSG00000129451.11|KLK10|pc|chr19:51018454:51018849:-	0	-
#Deleted in new
chr19	51030075	51030103	ENSG00000268906.1|AC011473.3|lncRNA|chr19:51030075:51030103:+	0	+
#Deleted in new
chr19	51043805	51043934	ENSG00000268390.1|AC011473.1|lncRNA|chr19:51043805:51043934:+	0	+
#Deleted in new
chr19	51051763	51052077	ENSG00000268390.1|AC011473.1|lncRNA|chr19:51051763:51052077:+	0	+
#Deleted in new
chr19	51084135	51084245	ENSG00000129437.9|KLK14|pc|chr19:51084135:51084245:-	0	-
#Deleted in new
chr19	5111374	5111544	ENSG00000127663.14|KDM4B|pc|chr19:5111374:5111544:+	0	+
#Deleted in new
chr19	5111774	5113340	ENSG00000127663.14|KDM4B|pc|chr19:5111774:5113340:+	0	+
#Deleted in new
chr19	5112357	5112636	ENSG00000127663.14|KDM4B|pc|chr19:5112357:5112636:+	0	+
#Deleted in new
chr19	51128799	51128958	ENSG00000129450.8|SIGLEC9|pc|chr19:51128799:51128958:+	0	+
#Deleted in new
chr19	51135961	51136651	ENSG00000129450.8|SIGLEC9|pc|chr19:51135961:51136651:+	0	+
#Partially deleted in new
chr19	51152922	51153956	ENSG00000269072.1|AC063977.6|lncRNA|chr19:51152922:51153956:-	0	-
#Deleted in new
chr19	51156345	51156473	ENSG00000269072.1|AC063977.6|lncRNA|chr19:51156345:51156473:-	0	-
#Deleted in new
chr19	51165220	51165273	ENSG00000269072.1|AC063977.6|lncRNA|chr19:51165220:51165273:-	0	-
#Deleted in new
chr19	51181473	51181966	ENSG00000269072.1|AC063977.6|lncRNA|chr19:51181473:51181966:-	0	-
#Partially deleted in new
chr19	51235822	51235966	ENSG00000105383.14|CD33|pc|chr19:51235822:51235966:+	0	+
#Partially deleted in new
chr19	51235822	51239738	ENSG00000105383.14|CD33|pc|chr19:51235822:51239738:+	0	+
#Deleted in new
chr19	51239266	51239304	ENSG00000105383.14|CD33|pc|chr19:51239266:51239304:+	0	+
#Deleted in new
chr19	51239517	51239942	ENSG00000105383.14|CD33|pc|chr19:51239517:51239942:+	0	+
#Deleted in new
chr19	51239517	51239988	ENSG00000105383.14|CD33|pc|chr19:51239517:51239988:+	0	+
#Deleted in new
chr19	51239517	51240015	ENSG00000105383.14|CD33|pc|chr19:51239517:51240015:+	0	+
#Deleted in new
chr19	51239517	51240016	ENSG00000105383.14|CD33|pc|chr19:51239517:51240016:+	0	+
#Deleted in new
chr19	51243042	51243108	ENSG00000105383.14|CD33|pc|chr19:51243042:51243108:+	0	+
#Deleted in new
chr19	51243409	51243860	ENSG00000105383.14|CD33|pc|chr19:51243409:51243860:+	0	+
#Deleted in new
chr19	51246347	51246396	ENSG00000179213.13|SIGLECL1|pc|chr19:51246347:51246396:+	0	+
#Deleted in new
chr19	51251077	51251545	ENSG00000179213.13|SIGLECL1|pc|chr19:51251077:51251545:+	0	+
#Deleted in new
chr19	51251230	51251534	ENSG00000268595.1|AC063977.3|lncRNA|chr19:51251230:51251534:-	0	-
#Deleted in new
chr19	51251248	51251545	ENSG00000179213.13|SIGLECL1|pc|chr19:51251248:51251545:+	0	+
#Deleted in new
chr19	51251271	51251545	ENSG00000179213.13|SIGLECL1|pc|chr19:51251271:51251545:+	0	+
#Deleted in new
chr19	51255933	51256032	ENSG00000179213.13|SIGLECL1|pc|chr19:51255933:51256032:+	0	+
#Deleted in new
chr19	51257709	51257900	ENSG00000179213.13|SIGLECL1|pc|chr19:51257709:51257900:+	0	+
#Deleted in new
chr19	51264422	51264439	ENSG00000179213.13|SIGLECL1|pc|chr19:51264422:51264439:+	0	+
#Deleted in new
chr19	51268570	51268617	ENSG00000179213.13|SIGLECL1|pc|chr19:51268570:51268617:+	0	+
#Deleted in new
chr19	51268570	51268993	ENSG00000179213.13|SIGLECL1|pc|chr19:51268570:51268993:+	0	+
#Deleted in new
chr19	51268570	51269328	ENSG00000179213.13|SIGLECL1|pc|chr19:51268570:51269328:+	0	+
#Deleted in new
chr19	51268570	51269330	ENSG00000179213.13|SIGLECL1|pc|chr19:51268570:51269330:+	0	+
#Deleted in new
chr19	51270162	51270244	ENSG00000268595.1|AC063977.3|lncRNA|chr19:51270162:51270244:-	0	-
#Deleted in new
chr19	51271018	51271179	ENSG00000268595.1|AC063977.3|lncRNA|chr19:51271018:51271179:-	0	-
#Deleted in new
chr19	51271265	51271572	ENSG00000268318.5|LINC01872|lncRNA|chr19:51271265:51271572:+	0	+
#Deleted in new
chr19	51271279	51271572	ENSG00000268318.5|LINC01872|lncRNA|chr19:51271279:51271572:+	0	+
#Deleted in new
chr19	51271398	51271572	ENSG00000268318.5|LINC01872|lncRNA|chr19:51271398:51271572:+	0	+
#Deleted in new
chr19	51278454	51278634	ENSG00000268318.5|LINC01872|lncRNA|chr19:51278454:51278634:+	0	+
#Deleted in new
chr19	51278753	51278871	ENSG00000268318.5|LINC01872|lncRNA|chr19:51278753:51278871:+	0	+
#Deleted in new
chr19	51343687	51343811	ENSG00000267905.5|AC008750.3|lncRNA|chr19:51343687:51343811:+	0	+
#Deleted in new
chr19	51344071	51344116	ENSG00000267905.5|AC008750.3|lncRNA|chr19:51344071:51344116:+	0	+
#Deleted in new
chr19	51344071	51344117	ENSG00000267905.5|AC008750.3|lncRNA|chr19:51344071:51344117:+	0	+
#Partially deleted in new
chr19	51354149	51357106	ENSG00000105379.9|ETFB|pc|chr19:51354149:51357106:-	0	-
#Deleted in new
chr19	51361711	51361792	ENSG00000268520.1|AC008750.5|lncRNA|chr19:51361711:51361792:-	0	-
#Deleted in new
chr19	5138261	5138470	ENSG00000127663.14|KDM4B|pc|chr19:5138261:5138470:+	0	+
#Deleted in new
chr1	95138274	95138554	ENSG00000231992.1|AC092802.3|lncRNA|chr1:95138274:95138554:+	0	+
#Deleted in new
chr19	51394487	51394595	ENSG00000268889.1|AC008750.7|lncRNA|chr19:51394487:51394595:+	0	+
#Deleted in new
chr19	5140251	5141503	ENSG00000127663.14|KDM4B|pc|chr19:5140251:5141503:+	0	+
#Partially deleted in new
chr19	51410020	51411371	ENSG00000142512.14|SIGLEC10|pc|chr19:51410020:51411371:-	0	-
#Partially deleted in new
chr19	51410021	51411371	ENSG00000142512.14|SIGLEC10|pc|chr19:51410021:51411371:-	0	-
#Deleted in new
chr19	51450846	51451095	ENSG00000105366.15|SIGLEC8|pc|chr19:51450846:51451095:-	0	-
#Split in new
chr19	51450996	51452633	ENSG00000105366.15|SIGLEC8|pc|chr19:51450996:51452633:-	0	-
#Duplicated in new
chr19	51452337	51452633	ENSG00000105366.15|SIGLEC8|pc|chr19:51452337:51452633:-	0	-
#Partially deleted in new
chr19	5151334	5153105	ENSG00000127663.14|KDM4B|pc|chr19:5151334:5153105:+	0	+
#Partially deleted in new
chr19	5151334	5153595	ENSG00000127663.14|KDM4B|pc|chr19:5151334:5153595:+	0	+
#Partially deleted in new
chr19	51519524	51520255	ENSG00000105492.15|SIGLEC6|pc|chr19:51519524:51520255:-	0	-
#Deleted in new
chr19	51519730	51520037	ENSG00000268777.1|AC020914.2|lncRNA|chr19:51519730:51520037:+	0	+
#Deleted in new
chr19	51528368	51528447	ENSG00000105492.15|SIGLEC6|pc|chr19:51528368:51528447:-	0	-
#Duplicated in new
chr19	51531581	51531717	ENSG00000105492.15|SIGLEC6|pc|chr19:51531581:51531717:-	0	-
#Duplicated in new
chr19	51531581	51531794	ENSG00000105492.15|SIGLEC6|pc|chr19:51531581:51531794:-	0	-
#Duplicated in new
chr19	51531581	51531803	ENSG00000105492.15|SIGLEC6|pc|chr19:51531581:51531803:-	0	-
#Deleted in new
chr19	5158494	5159104	ENSG00000105426.16|PTPRS|pc|chr19:5158494:5159104:-	0	-
#Split in new
chr19	51586626	51592508	ENSG00000105497.7|ZNF175|pc|chr19:51586626:51592508:+	0	+
#Deleted in new
chr19	51599288	51600470	ENSG00000267808.1|AC018755.1|lncRNA|chr19:51599288:51600470:+	0	+
#Deleted in new
chr19	51611926	51612422	ENSG00000105501.12|SIGLEC5|pc|chr19:51611926:51612422:-	0	-
#Deleted in new
chr19	51612090	51612422	ENSG00000268500.5|AC018755.2|pc|chr19:51612090:51612422:-	0	-
#Deleted in new
chr1	95163218	95165198	ENSG00000226026.5|AC092802.1|lncRNA|chr1:95163218:95165198:-	0	-
#Deleted in new
chr19	51639477	51639931	ENSG00000273837.1|AC018755.4|lncRNA|chr19:51639477:51639931:-	0	-
#Deleted in new
chr19	51642552	51643397	ENSG00000254415.3|SIGLEC14|pc|chr19:51642552:51643397:-	0	-
#Deleted in new
chr19	51642822	51642853	ENSG00000254415.3|SIGLEC14|pc|chr19:51642822:51642853:-	0	-
#Deleted in new
chr19	51643327	51643397	ENSG00000254415.3|SIGLEC14|pc|chr19:51643327:51643397:-	0	-
#Deleted in new
chr19	51643536	51643672	ENSG00000254415.3|SIGLEC14|pc|chr19:51643536:51643672:-	0	-
#Partially deleted in new
chr19	51685362	51688501	ENSG00000269959.1|SPACA6P-AS|lncRNA|chr19:51685362:51688501:-	0	-
#Deleted in new
chr19	51712032	51712387	ENSG00000182310.13|SPACA6|pc|chr19:51712032:51712387:+	0	+
#Deleted in new
chr19	5173968	5174082	ENSG00000105426.16|PTPRS|pc|chr19:5173968:5174082:-	0	-
#Deleted in new
chr1	95174123	95174181	ENSG00000226026.5|AC092802.1|lncRNA|chr1:95174123:95174181:-	0	-
#Deleted in new
chr19	51760031	51760175	ENSG00000171049.8|FPR2|pc|chr19:51760031:51760175:+	0	+
#Deleted in new
chr19	51762416	51762535	ENSG00000171049.8|FPR2|pc|chr19:51762416:51762535:+	0	+
#Deleted in new
chr19	51762759	51763517	ENSG00000171049.8|FPR2|pc|chr19:51762759:51763517:+	0	+
#Deleted in new
chr19	51763361	51763517	ENSG00000171049.8|FPR2|pc|chr19:51763361:51763517:+	0	+
#Deleted in new
chr19	51777644	51777783	ENSG00000171051.8|FPR1|pc|chr19:51777644:51777783:-	0	-
#Deleted in new
chr19	5178118	5178464	ENSG00000267550.1|AC022517.1|lncRNA|chr19:5178118:5178464:+	0	+
#Deleted in new
chr19	51795162	51795331	ENSG00000187474.4|FPR3|pc|chr19:51795162:51795331:+	0	+
#Deleted in new
chr19	51803792	51804110	ENSG00000171051.8|FPR1|pc|chr19:51803792:51804110:-	0	-
#Deleted in new
chr19	51804815	51805254	ENSG00000161551.14|ZNF577|pc|chr19:51804815:51805254:-	0	-
#Deleted in new
chr19	51811456	51811674	ENSG00000161551.14|ZNF577|pc|chr19:51811456:51811674:-	0	-
#Deleted in new
chr19	51839770	51839879	ENSG00000268316.1|AC006272.1|lncRNA|chr19:51839770:51839879:-	0	-
#Deleted in new
chr19	51839892	51840117	ENSG00000161551.14|ZNF577|pc|chr19:51839892:51840117:-	0	-
#Deleted in new
chr19	51840502	51840945	ENSG00000268316.1|AC006272.1|lncRNA|chr19:51840502:51840945:-	0	-
#Deleted in new
chr19	51844757	51844931	ENSG00000161551.14|ZNF577|pc|chr19:51844757:51844931:-	0	-
#Deleted in new
chr19	51855801	51855967	ENSG00000161551.14|ZNF577|pc|chr19:51855801:51855967:-	0	-
#Deleted in new
chr19	51855803	51855967	ENSG00000161551.14|ZNF577|pc|chr19:51855803:51855967:-	0	-
#Deleted in new
chr19	51855809	51855967	ENSG00000161551.14|ZNF577|pc|chr19:51855809:51855967:-	0	-
#Deleted in new
chr19	51860903	51860978	ENSG00000161551.14|ZNF577|pc|chr19:51860903:51860978:-	0	-
#Deleted in new
chr19	51860903	51861079	ENSG00000161551.14|ZNF577|pc|chr19:51860903:51861079:-	0	-
#Deleted in new
chr19	51871627	51871847	ENSG00000161551.14|ZNF577|pc|chr19:51871627:51871847:-	0	-
#Split in new
chr19	51877281	51878842	ENSG00000161551.14|ZNF577|pc|chr19:51877281:51878842:-	0	-
#Deleted in new
chr19	51880322	51880389	ENSG00000161551.14|ZNF577|pc|chr19:51880322:51880389:-	0	-
#Deleted in new
chr19	51880322	51880401	ENSG00000161551.14|ZNF577|pc|chr19:51880322:51880401:-	0	-
#Deleted in new
chr19	51880338	51880401	ENSG00000161551.14|ZNF577|pc|chr19:51880338:51880401:-	0	-
#Deleted in new
chr19	51880678	51880877	ENSG00000161551.14|ZNF577|pc|chr19:51880678:51880877:-	0	-
#Deleted in new
chr19	51880697	51880877	ENSG00000161551.14|ZNF577|pc|chr19:51880697:51880877:-	0	-
#Deleted in new
chr19	51880717	51880877	ENSG00000161551.14|ZNF577|pc|chr19:51880717:51880877:-	0	-
#Deleted in new
chr19	51886115	51886145	ENSG00000161551.14|ZNF577|pc|chr19:51886115:51886145:-	0	-
#Deleted in new
chr19	51886115	51886465	ENSG00000161551.14|ZNF577|pc|chr19:51886115:51886465:-	0	-
#Deleted in new
chr19	51886820	51886912	ENSG00000161551.14|ZNF577|pc|chr19:51886820:51886912:-	0	-
#Deleted in new
chr19	51886820	51887920	ENSG00000161551.14|ZNF577|pc|chr19:51886820:51887920:-	0	-
#Deleted in new
chr19	51886820	51887936	ENSG00000161551.14|ZNF577|pc|chr19:51886820:51887936:-	0	-
#Deleted in new
chr19	51886820	51887951	ENSG00000161551.14|ZNF577|pc|chr19:51886820:51887951:-	0	-
#Deleted in new
chr19	51887587	51887891	ENSG00000161551.14|ZNF577|pc|chr19:51887587:51887891:-	0	-
#Deleted in new
chr19	51887753	51887935	ENSG00000161551.14|ZNF577|pc|chr19:51887753:51887935:-	0	-
#Deleted in new
chr19	51887831	51887889	ENSG00000161551.14|ZNF577|pc|chr19:51887831:51887889:-	0	-
#Deleted in new
chr19	51887831	51887936	ENSG00000161551.14|ZNF577|pc|chr19:51887831:51887936:-	0	-
#Deleted in new
chr19	51887843	51887942	ENSG00000161551.14|ZNF577|pc|chr19:51887843:51887942:-	0	-
#Deleted in new
chr19	51887895	51887942	ENSG00000161551.14|ZNF577|pc|chr19:51887895:51887942:-	0	-
#Deleted in new
chr19	51887895	51887951	ENSG00000161551.14|ZNF577|pc|chr19:51887895:51887951:-	0	-
#Deleted in new
chr19	51887895	51887974	ENSG00000161551.14|ZNF577|pc|chr19:51887895:51887974:-	0	-
#Deleted in new
chr19	51887895	51887976	ENSG00000161551.14|ZNF577|pc|chr19:51887895:51887976:-	0	-
#Deleted in new
chr19	51887895	51887980	ENSG00000161551.14|ZNF577|pc|chr19:51887895:51887980:-	0	-
#Deleted in new
chr19	51888024	51888126	ENSG00000268095.1|ZNF649-AS1|lncRNA|chr19:51888024:51888126:+	0	+
#Partially deleted in new
chr19	51896109	51896567	ENSG00000198093.10|ZNF649|pc|chr19:51896109:51896567:-	0	-
#Deleted in new
chr19	51896160	51896296	ENSG00000268095.1|ZNF649-AS1|lncRNA|chr19:51896160:51896296:+	0	+
#Deleted in new
chr19	51899797	51899912	ENSG00000198093.10|ZNF649|pc|chr19:51899797:51899912:-	0	-
#Deleted in new
chr19	51899797	51900294	ENSG00000198093.10|ZNF649|pc|chr19:51899797:51900294:-	0	-
#Deleted in new
chr19	51900092	51900294	ENSG00000198093.10|ZNF649|pc|chr19:51900092:51900294:-	0	-
#Deleted in new
chr19	51900122	51900463	ENSG00000268095.1|ZNF649-AS1|lncRNA|chr19:51900122:51900463:+	0	+
#Deleted in new
chr19	51904132	51904245	ENSG00000198093.10|ZNF649|pc|chr19:51904132:51904245:-	0	-
#Deleted in new
chr19	51904913	51905011	ENSG00000198093.10|ZNF649|pc|chr19:51904913:51905011:-	0	-
#Deleted in new
chr19	51904913	51905017	ENSG00000198093.10|ZNF649|pc|chr19:51904913:51905017:-	0	-
#Deleted in new
chr19	51904913	51905019	ENSG00000198093.10|ZNF649|pc|chr19:51904913:51905019:-	0	-
#Deleted in new
chr19	51904913	51905040	ENSG00000198093.10|ZNF649|pc|chr19:51904913:51905040:-	0	-
#Deleted in new
chr19	51927146	51927540	ENSG00000176024.17|ZNF613|pc|chr19:51927146:51927540:+	0	+
#Deleted in new
chr19	51927219	51927540	ENSG00000176024.17|ZNF613|pc|chr19:51927219:51927540:+	0	+
#Deleted in new
chr19	51927434	51927540	ENSG00000176024.17|ZNF613|pc|chr19:51927434:51927540:+	0	+
#Deleted in new
chr19	51927447	51927540	ENSG00000176024.17|ZNF613|pc|chr19:51927447:51927540:+	0	+
#Deleted in new
chr19	51927473	51927540	ENSG00000176024.17|ZNF613|pc|chr19:51927473:51927540:+	0	+
#Deleted in new
chr19	51927483	51927540	ENSG00000176024.17|ZNF613|pc|chr19:51927483:51927540:+	0	+
#Deleted in new
chr19	51927894	51927994	ENSG00000176024.17|ZNF613|pc|chr19:51927894:51927994:+	0	+
#Deleted in new
chr19	51929731	51929824	ENSG00000176024.17|ZNF613|pc|chr19:51929731:51929824:+	0	+
#Deleted in new
chr19	51929731	51929896	ENSG00000176024.17|ZNF613|pc|chr19:51929731:51929896:+	0	+
#Deleted in new
chr19	51936027	51936125	ENSG00000176024.17|ZNF613|pc|chr19:51936027:51936125:+	0	+
#Deleted in new
chr19	51936027	51936235	ENSG00000176024.17|ZNF613|pc|chr19:51936027:51936235:+	0	+
#Deleted in new
chr19	51942724	51942820	ENSG00000176024.17|ZNF613|pc|chr19:51942724:51942820:+	0	+
#Deleted in new
chr19	51944118	51944165	ENSG00000176024.17|ZNF613|pc|chr19:51944118:51944165:+	0	+
#Deleted in new
chr19	51944118	51944246	ENSG00000176024.17|ZNF613|pc|chr19:51944118:51944246:+	0	+
#Deleted in new
chr19	51948592	51948759	ENSG00000176024.17|ZNF613|pc|chr19:51948592:51948759:+	0	+
#Deleted in new
chr19	51949133	51949235	ENSG00000269235.1|ZNF350-AS1|lncRNA|chr19:51949133:51949235:+	0	+
#Deleted in new
chr19	51949161	51949235	ENSG00000269235.1|ZNF350-AS1|lncRNA|chr19:51949161:51949235:+	0	+
#Deleted in new
chr19	51967287	51967400	ENSG00000256683.6|ZNF350|pc|chr19:51967287:51967400:-	0	-
#Deleted in new
chr19	51972966	51974531	ENSG00000256683.6|ZNF350|pc|chr19:51972966:51974531:-	0	-
#Deleted in new
chr19	51974345	51974531	ENSG00000256683.6|ZNF350|pc|chr19:51974345:51974531:-	0	-
#Deleted in new
chr19	51974677	51974853	ENSG00000256683.6|ZNF350|pc|chr19:51974677:51974853:-	0	-
#Deleted in new
chr19	51976390	51976573	ENSG00000269235.1|ZNF350-AS1|lncRNA|chr19:51976390:51976573:+	0	+
#Deleted in new
chr19	51976390	51976865	ENSG00000269235.1|ZNF350-AS1|lncRNA|chr19:51976390:51976865:+	0	+
#Deleted in new
chr19	51980926	51981367	ENSG00000269235.1|ZNF350-AS1|lncRNA|chr19:51980926:51981367:+	0	+
#Deleted in new
chr19	51981924	51982031	ENSG00000256683.6|ZNF350|pc|chr19:51981924:51982031:-	0	-
#Deleted in new
chr19	51984047	51984169	ENSG00000256683.6|ZNF350|pc|chr19:51984047:51984169:-	0	-
#Deleted in new
chr19	51986509	51986670	ENSG00000256683.6|ZNF350|pc|chr19:51986509:51986670:-	0	-
#Deleted in new
chr19	51986769	51986790	ENSG00000256683.6|ZNF350|pc|chr19:51986769:51986790:-	0	-
#Deleted in new
chr19	51986769	51986805	ENSG00000256683.6|ZNF350|pc|chr19:51986769:51986805:-	0	-
#Deleted in new
chr19	51986769	51986826	ENSG00000256683.6|ZNF350|pc|chr19:51986769:51986826:-	0	-
#Deleted in new
chr19	51986769	51986827	ENSG00000256683.6|ZNF350|pc|chr19:51986769:51986827:-	0	-
#Deleted in new
chr19	51986769	51986856	ENSG00000256683.6|ZNF350|pc|chr19:51986769:51986856:-	0	-
#Deleted in new
chr19	51994614	51994837	ENSG00000197619.13|ZNF615|pc|chr19:51994614:51994837:-	0	-
#Deleted in new
chr19	51994706	51994837	ENSG00000197619.13|ZNF615|pc|chr19:51994706:51994837:-	0	-
#Deleted in new
chr19	51994807	51994837	ENSG00000197619.13|ZNF615|pc|chr19:51994807:51994837:-	0	-
#Deleted in new
chr19	52000124	52000378	ENSG00000197619.13|ZNF615|pc|chr19:52000124:52000378:-	0	-
#Deleted in new
chr19	52000258	52000378	ENSG00000197619.13|ZNF615|pc|chr19:52000258:52000378:-	0	-
#Deleted in new
chr19	52000345	52000378	ENSG00000197619.13|ZNF615|pc|chr19:52000345:52000378:-	0	-
#Deleted in new
chr19	52000357	52000378	ENSG00000197619.13|ZNF615|pc|chr19:52000357:52000378:-	0	-
#Deleted in new
chr19	52001780	52001795	ENSG00000197619.13|ZNF615|pc|chr19:52001780:52001795:-	0	-
#Deleted in new
chr19	52001796	52001805	ENSG00000197619.13|ZNF615|pc|chr19:52001796:52001805:-	0	-
#Deleted in new
chr19	52003696	52003711	ENSG00000197619.13|ZNF615|pc|chr19:52003696:52003711:-	0	-
#Deleted in new
chr19	52003696	52003749	ENSG00000197619.13|ZNF615|pc|chr19:52003696:52003749:-	0	-
#Deleted in new
chr19	52003696	52003900	ENSG00000197619.13|ZNF615|pc|chr19:52003696:52003900:-	0	-
#Deleted in new
chr19	52003781	52003900	ENSG00000197619.13|ZNF615|pc|chr19:52003781:52003900:-	0	-
#Deleted in new
chr19	52003848	52003900	ENSG00000197619.13|ZNF615|pc|chr19:52003848:52003900:-	0	-
#Deleted in new
chr19	52004416	52004723	ENSG00000197619.13|ZNF615|pc|chr19:52004416:52004723:-	0	-
#Deleted in new
chr19	52004416	52004849	ENSG00000197619.13|ZNF615|pc|chr19:52004416:52004849:-	0	-
#Deleted in new
chr19	52007292	52007330	ENSG00000197619.13|ZNF615|pc|chr19:52007292:52007330:-	0	-
#Deleted in new
chr19	52007958	52008081	ENSG00000197619.13|ZNF615|pc|chr19:52007958:52008081:-	0	-
#Deleted in new
chr19	52008140	52008163	ENSG00000197619.13|ZNF615|pc|chr19:52008140:52008163:-	0	-
#Deleted in new
chr19	52008140	52008196	ENSG00000197619.13|ZNF615|pc|chr19:52008140:52008196:-	0	-
#Deleted in new
chr19	52008140	52008200	ENSG00000197619.13|ZNF615|pc|chr19:52008140:52008200:-	0	-
#Deleted in new
chr19	52008140	52008201	ENSG00000197619.13|ZNF615|pc|chr19:52008140:52008201:-	0	-
#Deleted in new
chr19	52008140	52008202	ENSG00000197619.13|ZNF615|pc|chr19:52008140:52008202:-	0	-
#Deleted in new
chr19	52008140	52008215	ENSG00000197619.13|ZNF615|pc|chr19:52008140:52008215:-	0	-
#Deleted in new
chr19	52008140	52008217	ENSG00000197619.13|ZNF615|pc|chr19:52008140:52008217:-	0	-
#Deleted in new
chr19	52008140	52008223	ENSG00000197619.13|ZNF615|pc|chr19:52008140:52008223:-	0	-
#Deleted in new
chr19	52008140	52008230	ENSG00000197619.13|ZNF615|pc|chr19:52008140:52008230:-	0	-
#Deleted in new
chr19	52012764	52013252	ENSG00000142556.18|ZNF614|pc|chr19:52012764:52013252:-	0	-
#Split in new
chr19	52013324	52017359	ENSG00000142556.18|ZNF614|pc|chr19:52013324:52017359:-	0	-
#Partially deleted in new
chr19	52017000	52017359	ENSG00000142556.18|ZNF614|pc|chr19:52017000:52017359:-	0	-
#Deleted in new
chr19	52017116	52017359	ENSG00000142556.18|ZNF614|pc|chr19:52017116:52017359:-	0	-
#Deleted in new
chr19	52017575	52017697	ENSG00000142556.18|ZNF614|pc|chr19:52017575:52017697:-	0	-
#Deleted in new
chr19	52025730	52025961	ENSG00000142556.18|ZNF614|pc|chr19:52025730:52025961:-	0	-
#Deleted in new
chr19	52028241	52028337	ENSG00000142556.18|ZNF614|pc|chr19:52028241:52028337:-	0	-
#Deleted in new
chr19	52028241	52028349	ENSG00000142556.18|ZNF614|pc|chr19:52028241:52028349:-	0	-
#Deleted in new
chr19	52028241	52028570	ENSG00000142556.18|ZNF614|pc|chr19:52028241:52028570:-	0	-
#Deleted in new
chr19	52029855	52030240	ENSG00000142556.18|ZNF614|pc|chr19:52029855:52030240:-	0	-
#Deleted in new
chr19	52035306	52035440	ENSG00000256087.6|ZNF432|pc|chr19:52035306:52035440:-	0	-
#Deleted in new
chr19	52046853	52047060	ENSG00000256087.6|ZNF432|pc|chr19:52046853:52047060:-	0	-
#Deleted in new
chr19	52046853	52047364	ENSG00000256087.6|ZNF432|pc|chr19:52046853:52047364:-	0	-
#Deleted in new
chr19	52048540	52048561	ENSG00000256087.6|ZNF432|pc|chr19:52048540:52048561:-	0	-
#Deleted in new
chr19	52048608	52048640	ENSG00000256087.6|ZNF432|pc|chr19:52048608:52048640:-	0	-
#Deleted in new
chr19	52048694	52048764	ENSG00000256087.6|ZNF432|pc|chr19:52048694:52048764:-	0	-
#Deleted in new
chr19	52048694	52048820	ENSG00000256087.6|ZNF432|pc|chr19:52048694:52048820:-	0	-
#Deleted in new
chr19	52048809	52049507	ENSG00000256087.6|ZNF432|pc|chr19:52048809:52049507:-	0	-
#Deleted in new
chr19	52049006	52049754	ENSG00000275055.1|AC011468.5|lncRNA|chr19:52049006:52049754:+	0	+
#Deleted in new
chr1	95205095	95205133	ENSG00000226026.5|AC092802.1|lncRNA|chr1:95205095:95205133:-	0	-
#Deleted in new
chr19	52058489	52059107	ENSG00000260160.1|AC011468.1|lncRNA|chr19:52058489:52059107:-	0	-
#Deleted in new
chr19	52063646	52063703	ENSG00000260160.1|AC011468.1|lncRNA|chr19:52063646:52063703:-	0	-
#Deleted in new
chr19	52064493	52064528	ENSG00000256087.6|ZNF432|pc|chr19:52064493:52064528:-	0	-
#Deleted in new
chr19	52088936	52089002	ENSG00000197608.11|ZNF841|pc|chr19:52088936:52089002:-	0	-
#Deleted in new
chr19	52093845	52093899	ENSG00000197608.11|ZNF841|pc|chr19:52093845:52093899:-	0	-
#Deleted in new
chr19	52093845	52093971	ENSG00000197608.11|ZNF841|pc|chr19:52093845:52093971:-	0	-
#Deleted in new
chr19	52093845	52094105	ENSG00000197608.11|ZNF841|pc|chr19:52093845:52094105:-	0	-
#Deleted in new
chr19	52095574	52095738	ENSG00000256087.6|ZNF432|pc|chr19:52095574:52095738:-	0	-
#Deleted in new
chr19	52095574	52095755	ENSG00000197608.11|ZNF841|pc|chr19:52095574:52095755:-	0	-
#Deleted in new
chr19	52095574	52095765	ENSG00000197608.11|ZNF841|pc|chr19:52095574:52095765:-	0	-
#Deleted in new
chr19	52122268	52122457	ENSG00000204611.6|ZNF616|pc|chr19:52122268:52122457:-	0	-
#Deleted in new
chr19	52122359	52122457	ENSG00000204611.6|ZNF616|pc|chr19:52122359:52122457:-	0	-
#Deleted in new
chr19	52122407	52122457	ENSG00000204611.6|ZNF616|pc|chr19:52122407:52122457:-	0	-
#Deleted in new
chr19	52138463	52138825	ENSG00000204611.6|ZNF616|pc|chr19:52138463:52138825:-	0	-
#Deleted in new
chr19	52139731	52139746	ENSG00000204611.6|ZNF616|pc|chr19:52139731:52139746:-	0	-
#Deleted in new
chr19	52139731	52139904	ENSG00000204611.6|ZNF616|pc|chr19:52139731:52139904:-	0	-
#Deleted in new
chr19	52139731	52139917	ENSG00000204611.6|ZNF616|pc|chr19:52139731:52139917:-	0	-
#Deleted in new
chr19	52139731	52139922	ENSG00000204611.6|ZNF616|pc|chr19:52139731:52139922:-	0	-
#Deleted in new
chr19	52143916	52144156	ENSG00000268458.1|AC011468.3|lncRNA|chr19:52143916:52144156:+	0	+
#Deleted in new
chr19	52153863	52154132	ENSG00000196267.12|ZNF836|pc|chr19:52153863:52154132:-	0	-
#Partially deleted in new
chr19	52154621	52154964	ENSG00000196267.12|ZNF836|pc|chr19:52154621:52154964:-	0	-
#Deleted in new
chr19	52165183	52165385	ENSG00000196267.12|ZNF836|pc|chr19:52165183:52165385:-	0	-
#Deleted in new
chr19	5216719	5216767	ENSG00000105426.16|PTPRS|pc|chr19:5216719:5216767:-	0	-
#Deleted in new
chr19	52169647	52169734	ENSG00000196267.12|ZNF836|pc|chr19:52169647:52169734:-	0	-
#Deleted in new
chr19	52169647	52169781	ENSG00000196267.12|ZNF836|pc|chr19:52169647:52169781:-	0	-
#Deleted in new
chr19	52169647	52169781	ENSG00000267827.5|AC011468.2|lncRNA|chr19:52169647:52169781:-	0	-
#Deleted in new
chr19	52169647	52169785	ENSG00000267827.5|AC011468.2|lncRNA|chr19:52169647:52169785:-	0	-
#Deleted in new
chr19	52170359	52170386	ENSG00000196267.12|ZNF836|pc|chr19:52170359:52170386:-	0	-
#Deleted in new
chr19	52171157	52171203	ENSG00000267927.1|AC010320.1|lncRNA|chr19:52171157:52171203:+	0	+
#Deleted in new
chr19	52171331	52171491	ENSG00000196267.12|ZNF836|pc|chr19:52171331:52171491:-	0	-
#Deleted in new
chr19	52171335	52171469	ENSG00000267827.5|AC011468.2|lncRNA|chr19:52171335:52171469:-	0	-
#Deleted in new
chr19	52171335	52171533	ENSG00000267827.5|AC011468.2|lncRNA|chr19:52171335:52171533:-	0	-
#Deleted in new
chr19	52171335	52171643	ENSG00000196267.12|ZNF836|pc|chr19:52171335:52171643:-	0	-
#Deleted in new
chr19	52176470	52177002	ENSG00000267927.1|AC010320.1|lncRNA|chr19:52176470:52177002:+	0	+
#Deleted in new
chr19	5218786	5218798	ENSG00000105426.16|PTPRS|pc|chr19:5218786:5218798:-	0	-
#Deleted in new
chr19	52201092	52201694	ENSG00000105568.17|PPP2R1A|pc|chr19:52201092:52201694:+	0	+
#Deleted in new
chr19	52201180	52201513	ENSG00000105568.17|PPP2R1A|pc|chr19:52201180:52201513:+	0	+
#Split in new
chr19	52225964	52229533	ENSG00000105568.17|PPP2R1A|pc|chr19:52225964:52229533:+	0	+
#Deleted in new
chr19	52228242	52228609	ENSG00000268015.1|AC010320.2|lncRNA|chr19:52228242:52228609:-	0	-
#Deleted in new
chr19	52228454	52228609	ENSG00000268015.1|AC010320.2|lncRNA|chr19:52228454:52228609:-	0	-
#Deleted in new
chr19	52229207	52229558	ENSG00000268015.1|AC010320.2|lncRNA|chr19:52229207:52229558:-	0	-
#Deleted in new
chr19	52231066	52231287	ENSG00000268015.1|AC010320.2|lncRNA|chr19:52231066:52231287:-	0	-
#Deleted in new
chr19	52231066	52231289	ENSG00000268015.1|AC010320.2|lncRNA|chr19:52231066:52231289:-	0	-
#Deleted in new
chr19	52231066	52231294	ENSG00000268015.1|AC010320.2|lncRNA|chr19:52231066:52231294:-	0	-
#Deleted in new
chr19	52269570	52269631	ENSG00000196214.10|ZNF766|pc|chr19:52269570:52269631:+	0	+
#Deleted in new
chr19	52269586	52269631	ENSG00000196214.10|ZNF766|pc|chr19:52269586:52269631:+	0	+
#Deleted in new
chr19	52269592	52269631	ENSG00000196214.10|ZNF766|pc|chr19:52269592:52269631:+	0	+
#Deleted in new
chr19	52274461	52274513	ENSG00000196214.10|ZNF766|pc|chr19:52274461:52274513:+	0	+
#Deleted in new
chr19	52274461	52274582	ENSG00000196214.10|ZNF766|pc|chr19:52274461:52274582:+	0	+
#Deleted in new
chr19	52274461	52274669	ENSG00000196214.10|ZNF766|pc|chr19:52274461:52274669:+	0	+
#Deleted in new
chr19	52274474	52274582	ENSG00000196214.10|ZNF766|pc|chr19:52274474:52274582:+	0	+
#Deleted in new
chr19	52275577	52275607	ENSG00000196214.10|ZNF766|pc|chr19:52275577:52275607:+	0	+
#Partially deleted in new
chr19	52277153	52277541	ENSG00000196214.10|ZNF766|pc|chr19:52277153:52277541:+	0	+
#Deleted in new
chr19	52284779	52285076	ENSG00000269102.1|AC010320.3|lncRNA|chr19:52284779:52285076:-	0	-
#Deleted in new
chr19	52288041	52288115	ENSG00000196214.10|ZNF766|pc|chr19:52288041:52288115:+	0	+
#Duplicated in new
chr19	52290065	52290247	ENSG00000196214.10|ZNF766|pc|chr19:52290065:52290247:+	0	+
#Split in new
chr19	52290065	52296046	ENSG00000196214.10|ZNF766|pc|chr19:52290065:52296046:+	0	+
#Deleted in new
chr19	52292148	52292724	ENSG00000196214.10|ZNF766|pc|chr19:52292148:52292724:+	0	+
#Deleted in new
chr19	52297176	52297223	ENSG00000198464.13|ZNF480|pc|chr19:52297176:52297223:+	0	+
#Deleted in new
chr19	52297178	52297223	ENSG00000198464.13|ZNF480|pc|chr19:52297178:52297223:+	0	+
#Deleted in new
chr19	52297770	52297920	ENSG00000269102.1|AC010320.3|lncRNA|chr19:52297770:52297920:-	0	-
#Deleted in new
chr19	52300393	52300484	ENSG00000198464.13|ZNF480|pc|chr19:52300393:52300484:+	0	+
#Deleted in new
chr19	52300692	52301875	ENSG00000269535.1|AC010320.4|lncRNA|chr19:52300692:52301875:-	0	-
#Deleted in new
chr19	52301980	52302130	ENSG00000269535.1|AC010320.4|lncRNA|chr19:52301980:52302130:-	0	-
#Deleted in new
chr19	52307391	52307544	ENSG00000269535.1|AC010320.4|lncRNA|chr19:52307391:52307544:-	0	-
#Deleted in new
chr19	52308666	52308753	ENSG00000269535.1|AC010320.4|lncRNA|chr19:52308666:52308753:-	0	-
#Deleted in new
chr19	52317415	52317513	ENSG00000198464.13|ZNF480|pc|chr19:52317415:52317513:+	0	+
#Duplicated in new
chr19	52321578	52324080	ENSG00000198464.13|ZNF480|pc|chr19:52321578:52324080:+	0	+
#Duplicated in new
chr19	52321578	52325922	ENSG00000198464.13|ZNF480|pc|chr19:52321578:52325922:+	0	+
#Deleted in new
chr19	52325823	52325895	ENSG00000269535.1|AC010320.4|lncRNA|chr19:52325823:52325895:-	0	-
#Deleted in new
chr19	52325882	52325919	ENSG00000198464.13|ZNF480|pc|chr19:52325882:52325919:+	0	+
#Deleted in new
chr19	52336244	52336506	ENSG00000167554.14|ZNF610|pc|chr19:52336244:52336506:+	0	+
#Deleted in new
chr19	52336303	52336506	ENSG00000167554.14|ZNF610|pc|chr19:52336303:52336506:+	0	+
#Deleted in new
chr19	52336307	52336506	ENSG00000167554.14|ZNF610|pc|chr19:52336307:52336506:+	0	+
#Deleted in new
chr19	52336311	52336506	ENSG00000167554.14|ZNF610|pc|chr19:52336311:52336506:+	0	+
#Deleted in new
chr19	52336361	52336506	ENSG00000167554.14|ZNF610|pc|chr19:52336361:52336506:+	0	+
#Deleted in new
chr19	52344077	52344146	ENSG00000167554.14|ZNF610|pc|chr19:52344077:52344146:+	0	+
#Deleted in new
chr19	52345030	52345229	ENSG00000269535.1|AC010320.4|lncRNA|chr19:52345030:52345229:-	0	-
#Deleted in new
chr19	52345428	52345546	ENSG00000167554.14|ZNF610|pc|chr19:52345428:52345546:+	0	+
#Deleted in new
chr19	52347092	52347255	ENSG00000167554.14|ZNF610|pc|chr19:52347092:52347255:+	0	+
#Deleted in new
chr19	52347706	52347831	ENSG00000167554.14|ZNF610|pc|chr19:52347706:52347831:+	0	+
#Deleted in new
chr19	52347706	52347944	ENSG00000167554.14|ZNF610|pc|chr19:52347706:52347944:+	0	+
#Deleted in new
chr19	52347706	52348049	ENSG00000167554.14|ZNF610|pc|chr19:52347706:52348049:+	0	+
#Deleted in new
chr19	52347706	52348212	ENSG00000167554.14|ZNF610|pc|chr19:52347706:52348212:+	0	+
#Deleted in new
chr19	52369916	52369977	ENSG00000221923.8|ZNF880|pc|chr19:52369916:52369977:+	0	+
#Deleted in new
chr19	52369935	52369977	ENSG00000221923.8|ZNF880|pc|chr19:52369935:52369977:+	0	+
#Deleted in new
chr19	52369938	52369977	ENSG00000221923.8|ZNF880|pc|chr19:52369938:52369977:+	0	+
#Deleted in new
chr19	52369945	52369977	ENSG00000221923.8|ZNF880|pc|chr19:52369945:52369977:+	0	+
#Deleted in new
chr19	52369950	52369977	ENSG00000221923.8|ZNF880|pc|chr19:52369950:52369977:+	0	+
#Deleted in new
chr19	52370092	52370602	ENSG00000221923.8|ZNF880|pc|chr19:52370092:52370602:+	0	+
#Deleted in new
chr19	52374483	52374717	ENSG00000221923.8|ZNF880|pc|chr19:52374483:52374717:+	0	+
#Deleted in new
chr19	52379420	52379540	ENSG00000221923.8|ZNF880|pc|chr19:52379420:52379540:+	0	+
#Deleted in new
chr19	52379420	52380075	ENSG00000221923.8|ZNF880|pc|chr19:52379420:52380075:+	0	+
#Deleted in new
chr19	52383848	52383969	ENSG00000221923.8|ZNF880|pc|chr19:52383848:52383969:+	0	+
#Deleted in new
chr19	52388841	52391573	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52388841:52391573:-	0	-
#Deleted in new
chr19	52389018	52389303	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52389018:52389303:-	0	-
#Deleted in new
chr19	52394790	52394847	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52394790:52394847:-	0	-
#Deleted in new
chr19	52395526	52395750	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52395526:52395750:-	0	-
#Deleted in new
chr19	52395597	52395750	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52395597:52395750:-	0	-
#Deleted in new
chr19	52396315	52396499	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52396315:52396499:-	0	-
#Deleted in new
chr19	52396364	52396499	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52396364:52396499:-	0	-
#Deleted in new
chr19	52396609	52396752	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52396609:52396752:-	0	-
#Deleted in new
chr19	52396638	52397267	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52396638:52397267:-	0	-
#Deleted in new
chr19	52397194	52397267	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52397194:52397267:-	0	-
#Deleted in new
chr19	52397461	52397669	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52397461:52397669:-	0	-
#Deleted in new
chr19	52397461	52397757	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52397461:52397757:-	0	-
#Deleted in new
chr19	52397461	52397766	ENSG00000269834.5|ZNF528-AS1|lncRNA|chr19:52397461:52397766:-	0	-
#Partially deleted in new
chr1	95239776	95239909	ENSG00000122481.16|RWDD3|pc|chr1:95239776:95239909:+	0	+
#Deleted in new
chr19	52397848	52397904	ENSG00000167555.13|ZNF528|pc|chr19:52397848:52397904:+	0	+
#Deleted in new
chr19	52397867	52397900	ENSG00000167555.13|ZNF528|pc|chr19:52397867:52397900:+	0	+
#Deleted in new
chr19	52397867	52397904	ENSG00000167555.13|ZNF528|pc|chr19:52397867:52397904:+	0	+
#Deleted in new
chr19	52397871	52397900	ENSG00000167555.13|ZNF528|pc|chr19:52397871:52397900:+	0	+
#Deleted in new
chr19	52397871	52397904	ENSG00000167555.13|ZNF528|pc|chr19:52397871:52397904:+	0	+
#Deleted in new
chr19	52397899	52398020	ENSG00000167555.13|ZNF528|pc|chr19:52397899:52398020:+	0	+
#Deleted in new
chr19	52398366	52398619	ENSG00000167555.13|ZNF528|pc|chr19:52398366:52398619:+	0	+
#Deleted in new
chr19	52398453	52398619	ENSG00000167555.13|ZNF528|pc|chr19:52398453:52398619:+	0	+
#Deleted in new
chr19	52402428	52402545	ENSG00000167555.13|ZNF528|pc|chr19:52402428:52402545:+	0	+
#Deleted in new
chr19	52408225	52408512	ENSG00000167555.13|ZNF528|pc|chr19:52408225:52408512:+	0	+
#Deleted in new
chr19	52411371	52414368	ENSG00000167555.13|ZNF528|pc|chr19:52411371:52414368:+	0	+
#Deleted in new
chr19	52414203	52414368	ENSG00000167555.13|ZNF528|pc|chr19:52414203:52414368:+	0	+
#Deleted in new
chr19	52414938	52415039	ENSG00000167555.13|ZNF528|pc|chr19:52414938:52415039:+	0	+
#Partially deleted in new
chr19	52415123	52415344	ENSG00000167555.13|ZNF528|pc|chr19:52415123:52415344:+	0	+
#Partially deleted in new
chr19	52415123	52415353	ENSG00000167555.13|ZNF528|pc|chr19:52415123:52415353:+	0	+
#Deleted in new
chr19	52429186	52429244	ENSG00000198633.10|ZNF534|pc|chr19:52429186:52429244:+	0	+
#Partially deleted in new
chr19	52451186	52452315	ENSG00000198633.10|ZNF534|pc|chr19:52451186:52452315:+	0	+
#Deleted in new
chr19	52453575	52453607	ENSG00000258405.9|ZNF578|pc|chr19:52453575:52453607:+	0	+
#Deleted in new
chr19	52453579	52453607	ENSG00000258405.9|ZNF578|pc|chr19:52453579:52453607:+	0	+
#Deleted in new
chr19	52453581	52458836	ENSG00000258405.9|ZNF578|pc|chr19:52453581:52458836:+	0	+
#Deleted in new
chr19	52453593	52453607	ENSG00000258405.9|ZNF578|pc|chr19:52453593:52453607:+	0	+
#Deleted in new
chr19	52453612	52453717	ENSG00000258405.9|ZNF578|pc|chr19:52453612:52453717:+	0	+
#Deleted in new
chr19	52456676	52456736	ENSG00000258405.9|ZNF578|pc|chr19:52456676:52456736:+	0	+
#Deleted in new
chr19	52456867	52456958	ENSG00000258405.9|ZNF578|pc|chr19:52456867:52456958:+	0	+
#Deleted in new
chr19	52457886	52458507	ENSG00000258405.9|ZNF578|pc|chr19:52457886:52458507:+	0	+
#Deleted in new
chr19	52457919	52458154	ENSG00000258405.9|ZNF578|pc|chr19:52457919:52458154:+	0	+
#Deleted in new
chr19	52457919	52458286	ENSG00000258405.9|ZNF578|pc|chr19:52457919:52458286:+	0	+
#Deleted in new
chr19	52491323	52491425	ENSG00000258405.9|ZNF578|pc|chr19:52491323:52491425:+	0	+
#Deleted in new
chr19	52492829	52492863	ENSG00000258405.9|ZNF578|pc|chr19:52492829:52492863:+	0	+
#Deleted in new
chr1	95249354	95249448	ENSG00000228852.6|AC092802.2|lncRNA|chr1:95249354:95249448:-	0	-
#Deleted in new
chr19	52527651	52527711	ENSG00000198482.11|ZNF808|pc|chr19:52527651:52527711:+	0	+
#Deleted in new
chr19	52527652	52527711	ENSG00000198482.11|ZNF808|pc|chr19:52527652:52527711:+	0	+
#Deleted in new
chr19	52527662	52527711	ENSG00000198482.11|ZNF808|pc|chr19:52527662:52527711:+	0	+
#Deleted in new
chr19	52527667	52527711	ENSG00000198482.11|ZNF808|pc|chr19:52527667:52527711:+	0	+
#Deleted in new
chr19	52527708	52527909	ENSG00000198482.11|ZNF808|pc|chr19:52527708:52527909:+	0	+
#Deleted in new
chr19	52532907	52533009	ENSG00000198482.11|ZNF808|pc|chr19:52532907:52533009:+	0	+
#Deleted in new
chr19	52535984	52536046	ENSG00000198482.11|ZNF808|pc|chr19:52535984:52536046:+	0	+
#Split in new
chr19	52555695	52556760	ENSG00000167562.12|ZNF701|pc|chr19:52555695:52556760:+	0	+
#Split in new
chr19	52563317	52564464	ENSG00000198482.11|ZNF808|pc|chr19:52563317:52564464:+	0	+
#Deleted in new
chr19	52570039	52570330	ENSG00000167562.12|ZNF701|pc|chr19:52570039:52570330:+	0	+
#Deleted in new
chr19	52570272	52570330	ENSG00000167562.12|ZNF701|pc|chr19:52570272:52570330:+	0	+
#Deleted in new
chr19	52570274	52570330	ENSG00000167562.12|ZNF701|pc|chr19:52570274:52570330:+	0	+
#Deleted in new
chr19	52570300	52570330	ENSG00000167562.12|ZNF701|pc|chr19:52570300:52570330:+	0	+
#Deleted in new
chr19	52570663	52570886	ENSG00000167562.12|ZNF701|pc|chr19:52570663:52570886:+	0	+
#Deleted in new
chr19	52572236	52572368	ENSG00000167562.12|ZNF701|pc|chr19:52572236:52572368:+	0	+
#Deleted in new
chr19	52572239	52572368	ENSG00000167562.12|ZNF701|pc|chr19:52572239:52572368:+	0	+
#Deleted in new
chr19	52572564	52572678	ENSG00000167562.12|ZNF701|pc|chr19:52572564:52572678:+	0	+
#Deleted in new
chr19	52573091	52573210	ENSG00000167562.12|ZNF701|pc|chr19:52573091:52573210:+	0	+
#Deleted in new
chr19	52585029	52585561	ENSG00000268886.1|AC022150.1|lncRNA|chr19:52585029:52585561:-	0	-
#Deleted in new
chr19	52594059	52594304	ENSG00000167766.18|ZNF83|pc|chr19:52594059:52594304:-	0	-
#Deleted in new
chr19	52594150	52594304	ENSG00000167766.18|ZNF83|pc|chr19:52594150:52594304:-	0	-
#Deleted in new
chr19	52597698	52598103	ENSG00000268970.1|AC022150.2|lncRNA|chr19:52597698:52598103:-	0	-
#Deleted in new
chr19	52598648	52598887	ENSG00000268970.1|AC022150.2|lncRNA|chr19:52598648:52598887:-	0	-
#Deleted in new
chr19	52616717	52616815	ENSG00000167766.18|ZNF83|pc|chr19:52616717:52616815:-	0	-
#Deleted in new
chr19	52616717	52616841	ENSG00000167766.18|ZNF83|pc|chr19:52616717:52616841:-	0	-
#Deleted in new
chr19	52616717	52616875	ENSG00000167766.18|ZNF83|pc|chr19:52616717:52616875:-	0	-
#Partially deleted in new
chr19	52616717	52618040	ENSG00000167766.18|ZNF83|pc|chr19:52616717:52618040:-	0	-
#Deleted in new
chr19	52617245	52617335	ENSG00000167766.18|ZNF83|pc|chr19:52617245:52617335:-	0	-
#Deleted in new
chr19	52617291	52617391	ENSG00000167766.18|ZNF83|pc|chr19:52617291:52617391:-	0	-
#Duplicated in new
chr19	52618499	52619062	ENSG00000167766.18|ZNF83|pc|chr19:52618499:52619062:-	0	-
#Duplicated in new
chr19	52618711	52619062	ENSG00000167766.18|ZNF83|pc|chr19:52618711:52619062:-	0	-
#Deleted in new
chr19	52635065	52635153	ENSG00000167766.18|ZNF83|pc|chr19:52635065:52635153:-	0	-
#Deleted in new
chr19	52635065	52635204	ENSG00000167766.18|ZNF83|pc|chr19:52635065:52635204:-	0	-
#Partially deleted in new
chr19	52635065	52637086	ENSG00000167766.18|ZNF83|pc|chr19:52635065:52637086:-	0	-
#Deleted in new
chr19	52638311	52638350	ENSG00000167766.18|ZNF83|pc|chr19:52638311:52638350:-	0	-
#Deleted in new
chr19	52638311	52638355	ENSG00000167766.18|ZNF83|pc|chr19:52638311:52638355:-	0	-
#Deleted in new
chr19	52638311	52638365	ENSG00000167766.18|ZNF83|pc|chr19:52638311:52638365:-	0	-
#Deleted in new
chr19	52638311	52638385	ENSG00000167766.18|ZNF83|pc|chr19:52638311:52638385:-	0	-
#Deleted in new
chr19	52638311	52638388	ENSG00000167766.18|ZNF83|pc|chr19:52638311:52638388:-	0	-
#Deleted in new
chr19	52638311	52638391	ENSG00000167766.18|ZNF83|pc|chr19:52638311:52638391:-	0	-
#Deleted in new
chr1	95263984	95264029	ENSG00000228852.6|AC092802.2|lncRNA|chr1:95263984:95264029:-	0	-
#Deleted in new
chr1	95263984	95264048	ENSG00000228852.6|AC092802.2|lncRNA|chr1:95263984:95264048:-	0	-
#Deleted in new
chr1	95263984	95264054	ENSG00000228852.6|AC092802.2|lncRNA|chr1:95263984:95264054:-	0	-
#Split in new
chr19	52650436	52653284	ENSG00000269825.1|AC022150.4|lncRNA|chr19:52650436:52653284:-	0	-
#Partially deleted in new
chr19	52654864	52655687	ENSG00000167766.18|ZNF83|pc|chr19:52654864:52655687:-	0	-
#Deleted in new
chr19	52674181	52674253	ENSG00000167766.18|ZNF83|pc|chr19:52674181:52674253:-	0	-
#Deleted in new
chr19	52690442	52690474	ENSG00000167766.18|ZNF83|pc|chr19:52690442:52690474:-	0	-
#Deleted in new
chr19	52690442	52690486	ENSG00000167766.18|ZNF83|pc|chr19:52690442:52690486:-	0	-
#Deleted in new
chr19	52690442	52690488	ENSG00000167766.18|ZNF83|pc|chr19:52690442:52690488:-	0	-
#Deleted in new
chr19	52690442	52690496	ENSG00000167766.18|ZNF83|pc|chr19:52690442:52690496:-	0	-
#Partially deleted in new
chr19	52707391	52707538	ENSG00000213020.9|ZNF611|pc|chr19:52707391:52707538:-	0	-
#Deleted in new
chr19	52707420	52707542	ENSG00000213020.9|ZNF611|pc|chr19:52707420:52707542:-	0	-
#Deleted in new
chr19	52707468	52707542	ENSG00000213020.9|ZNF611|pc|chr19:52707468:52707542:-	0	-
#Deleted in new
chr19	52708176	52708326	ENSG00000213020.9|ZNF611|pc|chr19:52708176:52708326:-	0	-
#Deleted in new
chr19	52708203	52708329	ENSG00000213020.9|ZNF611|pc|chr19:52708203:52708329:-	0	-
#Deleted in new
chr19	52708420	52708831	ENSG00000213020.9|ZNF611|pc|chr19:52708420:52708831:-	0	-
#Deleted in new
chr19	52711206	52711304	ENSG00000213020.9|ZNF611|pc|chr19:52711206:52711304:-	0	-
#Deleted in new
chr19	52716110	52716233	ENSG00000213020.9|ZNF611|pc|chr19:52716110:52716233:-	0	-
#Deleted in new
chr19	52720908	52721263	ENSG00000213020.9|ZNF611|pc|chr19:52720908:52721263:-	0	-
#Deleted in new
chr19	52721152	52721267	ENSG00000213020.9|ZNF611|pc|chr19:52721152:52721267:-	0	-
#Deleted in new
chr19	52721182	52721267	ENSG00000213020.9|ZNF611|pc|chr19:52721182:52721267:-	0	-
#Deleted in new
chr19	52723420	52724664	ENSG00000213020.9|ZNF611|pc|chr19:52723420:52724664:-	0	-
#Deleted in new
chr19	52723870	52723989	ENSG00000213020.9|ZNF611|pc|chr19:52723870:52723989:-	0	-
#Deleted in new
chr19	52728729	52728786	ENSG00000213020.9|ZNF611|pc|chr19:52728729:52728786:-	0	-
#Deleted in new
chr19	52728729	52728831	ENSG00000213020.9|ZNF611|pc|chr19:52728729:52728831:-	0	-
#Deleted in new
chr19	52728923	52728944	ENSG00000213020.9|ZNF611|pc|chr19:52728923:52728944:-	0	-
#Deleted in new
chr19	52729830	52729882	ENSG00000213020.9|ZNF611|pc|chr19:52729830:52729882:-	0	-
#Deleted in new
chr19	52729905	52730005	ENSG00000213020.9|ZNF611|pc|chr19:52729905:52730005:-	0	-
#Deleted in new
chr19	5273060	5273326	ENSG00000105426.16|PTPRS|pc|chr19:5273060:5273326:-	0	-
#Deleted in new
chr19	52735000	52735011	ENSG00000213020.9|ZNF611|pc|chr19:52735000:52735011:-	0	-
#Deleted in new
chr19	52735000	52735015	ENSG00000213020.9|ZNF611|pc|chr19:52735000:52735015:-	0	-
#Deleted in new
chr19	52735000	52735018	ENSG00000213020.9|ZNF611|pc|chr19:52735000:52735018:-	0	-
#Deleted in new
chr19	52735000	52735034	ENSG00000213020.9|ZNF611|pc|chr19:52735000:52735034:-	0	-
#Deleted in new
chr19	52735000	52735038	ENSG00000213020.9|ZNF611|pc|chr19:52735000:52735038:-	0	-
#Deleted in new
chr19	52735000	52735044	ENSG00000213020.9|ZNF611|pc|chr19:52735000:52735044:-	0	-
#Deleted in new
chr19	52735000	52735048	ENSG00000213020.9|ZNF611|pc|chr19:52735000:52735048:-	0	-
#Deleted in new
chr19	52735000	52735049	ENSG00000213020.9|ZNF611|pc|chr19:52735000:52735049:-	0	-
#Deleted in new
chr19	52735000	52735054	ENSG00000213020.9|ZNF611|pc|chr19:52735000:52735054:-	0	-
#Deleted in new
chr19	52735000	52735073	ENSG00000213020.9|ZNF611|pc|chr19:52735000:52735073:-	0	-
#Deleted in new
chr19	52778825	52778907	ENSG00000189190.9|ZNF600|pc|chr19:52778825:52778907:-	0	-
#Deleted in new
chr19	52780652	52781055	ENSG00000189190.9|ZNF600|pc|chr19:52780652:52781055:-	0	-
#Deleted in new
chr19	52780827	52781055	ENSG00000189190.9|ZNF600|pc|chr19:52780827:52781055:-	0	-
#Deleted in new
chr19	52780828	52781055	ENSG00000189190.9|ZNF600|pc|chr19:52780828:52781055:-	0	-
#Deleted in new
chr19	52780991	52781464	ENSG00000189190.9|ZNF600|pc|chr19:52780991:52781464:-	0	-
#Deleted in new
chr19	52781316	52781464	ENSG00000189190.9|ZNF600|pc|chr19:52781316:52781464:-	0	-
#Deleted in new
chr19	52786594	52786700	ENSG00000189190.9|ZNF600|pc|chr19:52786594:52786700:-	0	-
#Deleted in new
chr19	52786594	52786724	ENSG00000189190.9|ZNF600|pc|chr19:52786594:52786724:-	0	-
#Deleted in new
chr19	52786594	52786763	ENSG00000189190.9|ZNF600|pc|chr19:52786594:52786763:-	0	-
#Deleted in new
chr19	52786594	52786771	ENSG00000189190.9|ZNF600|pc|chr19:52786594:52786771:-	0	-
#Deleted in new
chr19	52786594	52786791	ENSG00000189190.9|ZNF600|pc|chr19:52786594:52786791:-	0	-
#Deleted in new
chr19	52805144	52805262	ENSG00000198538.10|ZNF28|pc|chr19:52805144:52805262:-	0	-
#Deleted in new
chr19	52805144	52806021	ENSG00000198538.10|ZNF28|pc|chr19:52805144:52806021:-	0	-
#Deleted in new
chr19	52814283	52814426	ENSG00000198538.10|ZNF28|pc|chr19:52814283:52814426:-	0	-
#Deleted in new
chr19	52821585	52821632	ENSG00000198538.10|ZNF28|pc|chr19:52821585:52821632:-	0	-
#Deleted in new
chr19	52821585	52821633	ENSG00000198538.10|ZNF28|pc|chr19:52821585:52821633:-	0	-
#Deleted in new
chr19	52821585	52821669	ENSG00000198538.10|ZNF28|pc|chr19:52821585:52821669:-	0	-
#Deleted in new
chr19	52845178	52845296	ENSG00000204604.9|ZNF468|pc|chr19:52845178:52845296:-	0	-
#Deleted in new
chr19	52845194	52845296	ENSG00000204604.9|ZNF468|pc|chr19:52845194:52845296:-	0	-
#Deleted in new
chr19	52845224	52845296	ENSG00000204604.9|ZNF468|pc|chr19:52845224:52845296:-	0	-
#Deleted in new
chr19	52845236	52845296	ENSG00000204604.9|ZNF468|pc|chr19:52845236:52845296:-	0	-
#Deleted in new
chr19	52846557	52846611	ENSG00000204604.9|ZNF468|pc|chr19:52846557:52846611:-	0	-
#Deleted in new
chr19	52849515	52849525	ENSG00000204604.9|ZNF468|pc|chr19:52849515:52849525:-	0	-
#Deleted in new
chr19	52857571	52857600	ENSG00000198538.10|ZNF28|pc|chr19:52857571:52857600:-	0	-
#Deleted in new
chr19	52857571	52857619	ENSG00000204604.9|ZNF468|pc|chr19:52857571:52857619:-	0	-
#Deleted in new
chr19	52857571	52857649	ENSG00000204604.9|ZNF468|pc|chr19:52857571:52857649:-	0	-
#Duplicated in new
chr19	52863789	52864159	ENSG00000182986.12|ZNF320|pc|chr19:52863789:52864159:-	0	-
#Duplicated in new
chr19	52863865	52864159	ENSG00000182986.12|ZNF320|pc|chr19:52863865:52864159:-	0	-
#Duplicated in new
chr19	52863921	52864159	ENSG00000182986.12|ZNF320|pc|chr19:52863921:52864159:-	0	-
#Deleted in new
chr19	52873991	52874072	ENSG00000182986.12|ZNF320|pc|chr19:52873991:52874072:-	0	-
#Deleted in new
chr19	52874157	52874237	ENSG00000182986.12|ZNF320|pc|chr19:52874157:52874237:-	0	-
#Split in new
chr19	52876171	52881983	ENSG00000182986.12|ZNF320|pc|chr19:52876171:52881983:-	0	-
#Deleted in new
chr19	52876177	52876585	ENSG00000182986.12|ZNF320|pc|chr19:52876177:52876585:-	0	-
#Split in new
chr19	52876179	52881983	ENSG00000182986.12|ZNF320|pc|chr19:52876179:52881983:-	0	-
#Deleted in new
chr19	52879450	52879633	ENSG00000182986.12|ZNF320|pc|chr19:52879450:52879633:-	0	-
#Deleted in new
chr19	52891228	52891346	ENSG00000182986.12|ZNF320|pc|chr19:52891228:52891346:-	0	-
#Deleted in new
chr19	52891228	52891346	ENSG00000283088.1|AC010487.3|pc|chr19:52891228:52891346:-	0	-
#Deleted in new
chr19	52892068	52892288	ENSG00000182986.12|ZNF320|pc|chr19:52892068:52892288:-	0	-
#Deleted in new
chr19	52893383	52893619	ENSG00000182986.12|ZNF320|pc|chr19:52893383:52893619:-	0	-
#Deleted in new
chr19	52893778	52893856	ENSG00000182986.12|ZNF320|pc|chr19:52893778:52893856:-	0	-
#Deleted in new
chr19	52893778	52893856	ENSG00000283088.1|AC010487.3|pc|chr19:52893778:52893856:-	0	-
#Deleted in new
chr19	52893778	52893927	ENSG00000182986.12|ZNF320|pc|chr19:52893778:52893927:-	0	-
#Deleted in new
chr19	52894125	52894220	ENSG00000182986.12|ZNF320|pc|chr19:52894125:52894220:-	0	-
#Deleted in new
chr19	52894125	52894220	ENSG00000283088.1|AC010487.3|pc|chr19:52894125:52894220:-	0	-
#Deleted in new
chr19	52894844	52895156	ENSG00000182986.12|ZNF320|pc|chr19:52894844:52895156:-	0	-
#Deleted in new
chr19	52895338	52895435	ENSG00000182986.12|ZNF320|pc|chr19:52895338:52895435:-	0	-
#Deleted in new
chr19	52895338	52895435	ENSG00000283088.1|AC010487.3|pc|chr19:52895338:52895435:-	0	-
#Deleted in new
chr19	52895390	52895782	ENSG00000182986.12|ZNF320|pc|chr19:52895390:52895782:-	0	-
#Deleted in new
chr19	52897509	52897650	ENSG00000182986.12|ZNF320|pc|chr19:52897509:52897650:-	0	-
#Deleted in new
chr19	52897519	52897560	ENSG00000182986.12|ZNF320|pc|chr19:52897519:52897560:-	0	-
#Deleted in new
chr19	52897519	52897635	ENSG00000182986.12|ZNF320|pc|chr19:52897519:52897635:-	0	-
#Deleted in new
chr19	52897519	52897649	ENSG00000182986.12|ZNF320|pc|chr19:52897519:52897649:-	0	-
#Deleted in new
chr19	52897519	52897654	ENSG00000182986.12|ZNF320|pc|chr19:52897519:52897654:-	0	-
#Deleted in new
chr19	52897519	52897655	ENSG00000182986.12|ZNF320|pc|chr19:52897519:52897655:-	0	-
#Deleted in new
chr19	52897647	52897684	ENSG00000182986.12|ZNF320|pc|chr19:52897647:52897684:-	0	-
#Deleted in new
chr19	52897647	52897693	ENSG00000182986.12|ZNF320|pc|chr19:52897647:52897693:-	0	-
#Deleted in new
chr19	52917221	52917404	ENSG00000213793.5|ZNF888|pc|chr19:52917221:52917404:-	0	-
#Deleted in new
chr19	52918818	52918937	ENSG00000213793.5|ZNF888|pc|chr19:52918818:52918937:-	0	-
#Deleted in new
chr19	52923368	52923470	ENSG00000213793.5|ZNF888|pc|chr19:52923368:52923470:-	0	-
#Deleted in new
chr19	52923368	52923481	ENSG00000213793.5|ZNF888|pc|chr19:52923368:52923481:-	0	-
#Deleted in new
chr19	52923381	52923464	ENSG00000269646.1|AC010487.2|lncRNA|chr19:52923381:52923464:+	0	+
#Deleted in new
chr19	52923672	52924075	ENSG00000269646.1|AC010487.2|lncRNA|chr19:52923672:52924075:+	0	+
#Deleted in new
chr19	5292730	5292787	ENSG00000105426.16|PTPRS|pc|chr19:5292730:5292787:-	0	-
#Deleted in new
chr19	5293140	5293252	ENSG00000105426.16|PTPRS|pc|chr19:5293140:5293252:-	0	-
#Deleted in new
chr19	5294246	5294696	ENSG00000274447.1|AC005790.1|lncRNA|chr19:5294246:5294696:+	0	+
#Deleted in new
chr19	52951750	52951891	ENSG00000180257.13|ZNF816|pc|chr19:52951750:52951891:-	0	-
#Deleted in new
chr19	52953283	52953389	ENSG00000180257.13|ZNF816|pc|chr19:52953283:52953389:-	0	-
#Deleted in new
chr19	52956191	52956265	ENSG00000180257.13|ZNF816|pc|chr19:52956191:52956265:-	0	-
#Deleted in new
chr19	52960026	52960177	ENSG00000180257.13|ZNF816|pc|chr19:52960026:52960177:-	0	-
#Deleted in new
chr19	52962716	52962823	ENSG00000221874.4|ZNF816-ZNF321P|pc|chr19:52962716:52962823:-	0	-
#Deleted in new
chr19	52962716	52962878	ENSG00000180257.13|ZNF816|pc|chr19:52962716:52962878:-	0	-
#Deleted in new
chr19	52962716	52962911	ENSG00000180257.13|ZNF816|pc|chr19:52962716:52962911:-	0	-
#Deleted in new
chr19	52962726	52962768	ENSG00000283088.1|AC010487.3|pc|chr19:52962726:52962768:-	0	-
#Deleted in new
chr19	52962726	52962825	ENSG00000180257.13|ZNF816|pc|chr19:52962726:52962825:-	0	-
#Deleted in new
chr19	52962726	52962851	ENSG00000180257.13|ZNF816|pc|chr19:52962726:52962851:-	0	-
#Deleted in new
chr19	52962726	52962861	ENSG00000180257.13|ZNF816|pc|chr19:52962726:52962861:-	0	-
#Deleted in new
chr19	52962726	52962871	ENSG00000180257.13|ZNF816|pc|chr19:52962726:52962871:-	0	-
#Deleted in new
chr19	52962726	52962882	ENSG00000180257.13|ZNF816|pc|chr19:52962726:52962882:-	0	-
#Deleted in new
chr19	52980835	52980972	ENSG00000269082.1|AC010328.3|lncRNA|chr19:52980835:52980972:-	0	-
#Deleted in new
chr19	52981521	52981654	ENSG00000269082.1|AC010328.3|lncRNA|chr19:52981521:52981654:-	0	-
#Deleted in new
chr19	53007511	53007737	ENSG00000267943.1|AC010328.1|lncRNA|chr19:53007511:53007737:+	0	+
#Deleted in new
chr19	53009346	53013180	ENSG00000267943.1|AC010328.1|lncRNA|chr19:53009346:53013180:+	0	+
#Deleted in new
chr19	53013920	53016122	ENSG00000269526.1|ERVV-1|pc|chr19:53013920:53016122:+	0	+
#Deleted in new
chr19	53044737	53044958	ENSG00000268964.1|ERVV-2|pc|chr19:53044737:53044958:+	0	+
#Deleted in new
chr19	53048866	53051076	ENSG00000268964.1|ERVV-2|pc|chr19:53048866:53051076:+	0	+
#Deleted in new
chr19	53072885	53073509	ENSG00000170949.17|ZNF160|pc|chr19:53072885:53073509:-	0	-
#Deleted in new
chr19	53076912	53077412	ENSG00000170949.17|ZNF160|pc|chr19:53076912:53077412:-	0	-
#Deleted in new
chr19	53084953	53086321	ENSG00000170949.17|ZNF160|pc|chr19:53084953:53086321:-	0	-
#Deleted in new
chr19	53085117	53085395	ENSG00000170949.17|ZNF160|pc|chr19:53085117:53085395:-	0	-
#Deleted in new
chr19	53085160	53085218	ENSG00000170949.17|ZNF160|pc|chr19:53085160:53085218:-	0	-
#Deleted in new
chr19	53085162	53085384	ENSG00000170949.17|ZNF160|pc|chr19:53085162:53085384:-	0	-
#Deleted in new
chr19	53085808	53086109	ENSG00000170949.17|ZNF160|pc|chr19:53085808:53086109:-	0	-
#Deleted in new
chr19	53085939	53086109	ENSG00000170949.17|ZNF160|pc|chr19:53085939:53086109:-	0	-
#Deleted in new
chr19	53086056	53086088	ENSG00000170949.17|ZNF160|pc|chr19:53086056:53086088:-	0	-
#Deleted in new
chr19	53086131	53086321	ENSG00000170949.17|ZNF160|pc|chr19:53086131:53086321:-	0	-
#Deleted in new
chr19	53086261	53086321	ENSG00000170949.17|ZNF160|pc|chr19:53086261:53086321:-	0	-
#Deleted in new
chr19	53091033	53091720	ENSG00000170949.17|ZNF160|pc|chr19:53091033:53091720:-	0	-
#Deleted in new
chr19	53091412	53091497	ENSG00000170949.17|ZNF160|pc|chr19:53091412:53091497:-	0	-
#Deleted in new
chr19	53091412	53091529	ENSG00000170949.17|ZNF160|pc|chr19:53091412:53091529:-	0	-
#Deleted in new
chr19	53091412	53091553	ENSG00000170949.17|ZNF160|pc|chr19:53091412:53091553:-	0	-
#Deleted in new
chr19	53091412	53091720	ENSG00000170949.17|ZNF160|pc|chr19:53091412:53091720:-	0	-
#Deleted in new
chr19	53091636	53091720	ENSG00000170949.17|ZNF160|pc|chr19:53091636:53091720:-	0	-
#Deleted in new
chr19	53093581	53093637	ENSG00000170949.17|ZNF160|pc|chr19:53093581:53093637:-	0	-
#Deleted in new
chr19	53095359	53095766	ENSG00000170949.17|ZNF160|pc|chr19:53095359:53095766:-	0	-
#Deleted in new
chr19	53103264	53103327	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103327:-	0	-
#Deleted in new
chr19	53103264	53103351	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103351:-	0	-
#Deleted in new
chr19	53103264	53103378	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103378:-	0	-
#Deleted in new
chr19	53103264	53103393	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103393:-	0	-
#Deleted in new
chr19	53103264	53103403	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103403:-	0	-
#Deleted in new
chr19	53103264	53103408	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103408:-	0	-
#Deleted in new
chr19	53103264	53103413	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103413:-	0	-
#Deleted in new
chr19	53103264	53103416	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103416:-	0	-
#Deleted in new
chr19	53103264	53103422	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103422:-	0	-
#Deleted in new
chr19	53103264	53103423	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103423:-	0	-
#Deleted in new
chr19	53103264	53103434	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103434:-	0	-
#Deleted in new
chr19	53103264	53103436	ENSG00000170949.17|ZNF160|pc|chr19:53103264:53103436:-	0	-
#Deleted in new
chr19	53115209	53115307	ENSG00000170954.11|ZNF415|pc|chr19:53115209:53115307:-	0	-
#Deleted in new
chr19	53115234	53115332	ENSG00000170954.11|ZNF415|pc|chr19:53115234:53115332:-	0	-
#Deleted in new
chr19	53115257	53115332	ENSG00000170954.11|ZNF415|pc|chr19:53115257:53115332:-	0	-
#Deleted in new
chr19	53123500	53123649	ENSG00000170954.11|ZNF415|pc|chr19:53123500:53123649:-	0	-
#Deleted in new
chr19	53123500	53123655	ENSG00000170954.11|ZNF415|pc|chr19:53123500:53123655:-	0	-
#Deleted in new
chr19	53123500	53123708	ENSG00000170954.11|ZNF415|pc|chr19:53123500:53123708:-	0	-
#Deleted in new
chr19	53123792	53123906	ENSG00000170954.11|ZNF415|pc|chr19:53123792:53123906:-	0	-
#Deleted in new
chr19	53124071	53124329	ENSG00000197937.12|ZNF347|pc|chr19:53124071:53124329:-	0	-
#Deleted in new
chr19	53129578	53129665	ENSG00000170954.11|ZNF415|pc|chr19:53129578:53129665:-	0	-
#Deleted in new
chr19	53129578	53129699	ENSG00000170954.11|ZNF415|pc|chr19:53129578:53129699:-	0	-
#Deleted in new
chr19	53129578	53129709	ENSG00000170954.11|ZNF415|pc|chr19:53129578:53129709:-	0	-
#Deleted in new
chr19	53132748	53132875	ENSG00000170954.11|ZNF415|pc|chr19:53132748:53132875:-	0	-
#Deleted in new
chr19	53132748	53132886	ENSG00000170954.11|ZNF415|pc|chr19:53132748:53132886:-	0	-
#Deleted in new
chr19	53132748	53132888	ENSG00000170954.11|ZNF415|pc|chr19:53132748:53132888:-	0	-
#Deleted in new
chr19	53132748	53132900	ENSG00000170954.11|ZNF415|pc|chr19:53132748:53132900:-	0	-
#Deleted in new
chr19	53132748	53132916	ENSG00000170954.11|ZNF415|pc|chr19:53132748:53132916:-	0	-
#Deleted in new
chr19	53132748	53132918	ENSG00000170954.11|ZNF415|pc|chr19:53132748:53132918:-	0	-
#Deleted in new
chr19	53132748	53133077	ENSG00000170954.11|ZNF415|pc|chr19:53132748:53133077:-	0	-
#Deleted in new
chr19	53132855	53132875	ENSG00000170954.11|ZNF415|pc|chr19:53132855:53132875:-	0	-
#Deleted in new
chr19	53132855	53132881	ENSG00000170954.11|ZNF415|pc|chr19:53132855:53132881:-	0	-
#Deleted in new
chr19	53132855	53132884	ENSG00000170954.11|ZNF415|pc|chr19:53132855:53132884:-	0	-
#Deleted in new
chr19	53132855	53132892	ENSG00000170954.11|ZNF415|pc|chr19:53132855:53132892:-	0	-
#Deleted in new
chr19	53132855	53132895	ENSG00000170954.11|ZNF415|pc|chr19:53132855:53132895:-	0	-
#Deleted in new
chr19	53132855	53132900	ENSG00000170954.11|ZNF415|pc|chr19:53132855:53132900:-	0	-
#Deleted in new
chr19	53132855	53132904	ENSG00000170954.11|ZNF415|pc|chr19:53132855:53132904:-	0	-
#Deleted in new
chr19	53132855	53132920	ENSG00000170954.11|ZNF415|pc|chr19:53132855:53132920:-	0	-
#Deleted in new
chr19	53158679	53159004	ENSG00000197937.12|ZNF347|pc|chr19:53158679:53159004:-	0	-
#Deleted in new
chr19	53158679	53159060	ENSG00000197937.12|ZNF347|pc|chr19:53158679:53159060:-	0	-
#Deleted in new
chr19	53159008	53159031	ENSG00000197937.12|ZNF347|pc|chr19:53159008:53159031:-	0	-
#Deleted in new
chr19	53159008	53159047	ENSG00000197937.12|ZNF347|pc|chr19:53159008:53159047:-	0	-
#Deleted in new
chr19	53159008	53159053	ENSG00000197937.12|ZNF347|pc|chr19:53159008:53159053:-	0	-
#Deleted in new
chr19	53159008	53159075	ENSG00000197937.12|ZNF347|pc|chr19:53159008:53159075:-	0	-
#Deleted in new
chr19	53159212	53159498	ENSG00000197497.10|ZNF665|pc|chr19:53159212:53159498:-	0	-
#Deleted in new
chr19	53161457	53161551	ENSG00000197497.10|ZNF665|pc|chr19:53161457:53161551:-	0	-
#Deleted in new
chr19	53162427	53162583	ENSG00000268842.1|AC092070.1|lncRNA|chr19:53162427:53162583:+	0	+
#Deleted in new
chr19	53163360	53163563	ENSG00000268842.1|AC092070.1|lncRNA|chr19:53163360:53163563:+	0	+
#Deleted in new
chr19	53163849	53163899	ENSG00000197497.10|ZNF665|pc|chr19:53163849:53163899:-	0	-
#Deleted in new
chr19	53179567	53179984	ENSG00000197497.10|ZNF665|pc|chr19:53179567:53179984:-	0	-
#Deleted in new
chr19	53179696	53179984	ENSG00000197497.10|ZNF665|pc|chr19:53179696:53179984:-	0	-
#Partially deleted in new
chr19	53180646	53182943	ENSG00000197497.10|ZNF665|pc|chr19:53180646:53182943:-	0	-
#Deleted in new
chr19	53190185	53190320	ENSG00000197497.10|ZNF665|pc|chr19:53190185:53190320:-	0	-
#Deleted in new
chr19	53191718	53191835	ENSG00000197497.10|ZNF665|pc|chr19:53191718:53191835:-	0	-
#Deleted in new
chr19	53193311	53193327	ENSG00000197497.10|ZNF665|pc|chr19:53193311:53193327:-	0	-
#Deleted in new
chr19	53193311	53193356	ENSG00000197497.10|ZNF665|pc|chr19:53193311:53193356:-	0	-
#Deleted in new
chr19	53193311	53193366	ENSG00000197497.10|ZNF665|pc|chr19:53193311:53193366:-	0	-
#Deleted in new
chr19	53193311	53193374	ENSG00000197497.10|ZNF665|pc|chr19:53193311:53193374:-	0	-
#Deleted in new
chr19	53193311	53193386	ENSG00000197497.10|ZNF665|pc|chr19:53193311:53193386:-	0	-
#Partially deleted in new
chr19	53238596	53241803	ENSG00000197928.10|ZNF677|pc|chr19:53238596:53241803:-	0	-
#Deleted in new
chr19	53240674	53240861	ENSG00000269288.1|AC092070.3|lncRNA|chr19:53240674:53240861:+	0	+
#Deleted in new
chr19	53241391	53241865	ENSG00000197928.10|ZNF677|pc|chr19:53241391:53241865:-	0	-
#Deleted in new
chr19	53241763	53241913	ENSG00000269288.1|AC092070.3|lncRNA|chr19:53241763:53241913:+	0	+
#Deleted in new
chr19	53241923	53242330	ENSG00000197928.10|ZNF677|pc|chr19:53241923:53242330:-	0	-
#Deleted in new
chr19	53242080	53242440	ENSG00000197928.10|ZNF677|pc|chr19:53242080:53242440:-	0	-
#Deleted in new
chr19	53249121	53249471	ENSG00000197928.10|ZNF677|pc|chr19:53249121:53249471:-	0	-
#Deleted in new
chr19	53253085	53253156	ENSG00000197928.10|ZNF677|pc|chr19:53253085:53253156:-	0	-
#Deleted in new
chr19	53254598	53254821	ENSG00000197928.10|ZNF677|pc|chr19:53254598:53254821:-	0	-
#Deleted in new
chr19	53254598	53254831	ENSG00000197928.10|ZNF677|pc|chr19:53254598:53254831:-	0	-
#Deleted in new
chr19	53254629	53254688	ENSG00000197928.10|ZNF677|pc|chr19:53254629:53254688:-	0	-
#Deleted in new
chr19	53254833	53254846	ENSG00000197928.10|ZNF677|pc|chr19:53254833:53254846:-	0	-
#Deleted in new
chr19	53254833	53254858	ENSG00000197928.10|ZNF677|pc|chr19:53254833:53254858:-	0	-
#Deleted in new
chr19	53254833	53254860	ENSG00000197928.10|ZNF677|pc|chr19:53254833:53254860:-	0	-
#Deleted in new
chr19	53254833	53254879	ENSG00000197928.10|ZNF677|pc|chr19:53254833:53254879:-	0	-
#Deleted in new
chr19	53254833	53254898	ENSG00000197928.10|ZNF677|pc|chr19:53254833:53254898:-	0	-
#Deleted in new
chr19	53261688	53261837	ENSG00000196131.6|VN1R2|pc|chr19:53261688:53261837:+	0	+
#Deleted in new
chr19	53269984	53270320	ENSG00000269758.1|AC092070.4|lncRNA|chr19:53269984:53270320:-	0	-
#Deleted in new
chr19	53333748	53333792	ENSG00000213799.11|ZNF845|pc|chr19:53333748:53333792:+	0	+
#Deleted in new
chr19	53340823	53340925	ENSG00000213799.11|ZNF845|pc|chr19:53340823:53340925:+	0	+
#Duplicated in new
chr19	53350817	53354869	ENSG00000213799.11|ZNF845|pc|chr19:53350817:53354869:+	0	+
#Deleted in new
chr19	53365692	53365759	ENSG00000203326.11|ZNF525|pc|chr19:53365692:53365759:+	0	+
#Deleted in new
chr19	53365703	53365759	ENSG00000203326.11|ZNF525|pc|chr19:53365703:53365759:+	0	+
#Deleted in new
chr19	53365706	53365759	ENSG00000203326.11|ZNF525|pc|chr19:53365706:53365759:+	0	+
#Deleted in new
chr19	53365712	53365759	ENSG00000203326.11|ZNF525|pc|chr19:53365712:53365759:+	0	+
#Deleted in new
chr19	53365728	53365759	ENSG00000203326.11|ZNF525|pc|chr19:53365728:53365759:+	0	+
#Deleted in new
chr19	53379380	53379474	ENSG00000203326.11|ZNF525|pc|chr19:53379380:53379474:+	0	+
#Deleted in new
chr19	53384969	53385231	ENSG00000203326.11|ZNF525|pc|chr19:53384969:53385231:+	0	+
#Partially deleted in new
chr19	53384969	53386581	ENSG00000203326.11|ZNF525|pc|chr19:53384969:53386581:+	0	+
#Deleted in new
chr19	53389792	53390209	ENSG00000196417.12|ZNF765|pc|chr19:53389792:53390209:+	0	+
#Deleted in new
chr19	53391867	53392217	ENSG00000203326.11|ZNF525|pc|chr19:53391867:53392217:+	0	+
#Deleted in new
chr19	53395143	53395193	ENSG00000196417.12|ZNF765|pc|chr19:53395143:53395193:+	0	+
#Deleted in new
chr19	53395149	53395193	ENSG00000196417.12|ZNF765|pc|chr19:53395149:53395193:+	0	+
#Deleted in new
chr19	53395154	53395193	ENSG00000196417.12|ZNF765|pc|chr19:53395154:53395193:+	0	+
#Deleted in new
chr19	53395160	53395193	ENSG00000196417.12|ZNF765|pc|chr19:53395160:53395193:+	0	+
#Deleted in new
chr19	53395172	53395193	ENSG00000196417.12|ZNF765|pc|chr19:53395172:53395193:+	0	+
#Split in new
chr19	53423061	53430413	ENSG00000196417.12|ZNF765|pc|chr19:53423061:53430413:+	0	+
#Deleted in new
chr19	53425070	53425147	ENSG00000196417.12|ZNF765|pc|chr19:53425070:53425147:+	0	+
#Deleted in new
chr19	53425329	53425451	ENSG00000196417.12|ZNF765|pc|chr19:53425329:53425451:+	0	+
#Deleted in new
chr19	53425329	53425568	ENSG00000196417.12|ZNF765|pc|chr19:53425329:53425568:+	0	+
#Deleted in new
chr19	53426017	53426042	ENSG00000196417.12|ZNF765|pc|chr19:53426017:53426042:+	0	+
#Deleted in new
chr19	53426489	53426584	ENSG00000196417.12|ZNF765|pc|chr19:53426489:53426584:+	0	+
#Deleted in new
chr19	53426489	53426595	ENSG00000196417.12|ZNF765|pc|chr19:53426489:53426595:+	0	+
#Deleted in new
chr19	53426864	53426888	ENSG00000196417.12|ZNF765|pc|chr19:53426864:53426888:+	0	+
#Deleted in new
chr19	53426868	53426936	ENSG00000196417.12|ZNF765|pc|chr19:53426868:53426936:+	0	+
#Deleted in new
chr19	53427086	53427155	ENSG00000196417.12|ZNF765|pc|chr19:53427086:53427155:+	0	+
#Deleted in new
chr19	53427086	53427321	ENSG00000196417.12|ZNF765|pc|chr19:53427086:53427321:+	0	+
#Deleted in new
chr19	53431992	53432028	ENSG00000160336.14|ZNF761|pc|chr19:53431992:53432028:+	0	+
#Deleted in new
chr19	53445000	53445123	ENSG00000160336.14|ZNF761|pc|chr19:53445000:53445123:+	0	+
#Deleted in new
chr19	53445184	53445275	ENSG00000160336.14|ZNF761|pc|chr19:53445184:53445275:+	0	+
#Deleted in new
chr19	53446226	53446337	ENSG00000160336.14|ZNF761|pc|chr19:53446226:53446337:+	0	+
#Deleted in new
chr19	53467734	53467789	ENSG00000198346.10|ZNF813|pc|chr19:53467734:53467789:+	0	+
#Deleted in new
chr19	53467742	53467789	ENSG00000198346.10|ZNF813|pc|chr19:53467742:53467789:+	0	+
#Deleted in new
chr19	53488207	53488300	ENSG00000198346.10|ZNF813|pc|chr19:53488207:53488300:+	0	+
#Deleted in new
chr19	53520980	53522084	ENSG00000130844.16|ZNF331|pc|chr19:53520980:53522084:+	0	+
#Deleted in new
chr19	53521023	53522084	ENSG00000130844.16|ZNF331|pc|chr19:53521023:53522084:+	0	+
#Deleted in new
chr19	53521838	53522084	ENSG00000130844.16|ZNF331|pc|chr19:53521838:53522084:+	0	+
#Deleted in new
chr19	53521855	53522084	ENSG00000130844.16|ZNF331|pc|chr19:53521855:53522084:+	0	+
#Deleted in new
chr19	53522616	53522684	ENSG00000130844.16|ZNF331|pc|chr19:53522616:53522684:+	0	+
#Deleted in new
chr19	53523263	53523515	ENSG00000130844.16|ZNF331|pc|chr19:53523263:53523515:+	0	+
#Deleted in new
chr19	53536322	53536357	ENSG00000130844.16|ZNF331|pc|chr19:53536322:53536357:+	0	+
#Deleted in new
chr19	53537252	53537755	ENSG00000130844.16|ZNF331|pc|chr19:53537252:53537755:+	0	+
#Deleted in new
chr19	53537684	53537755	ENSG00000130844.16|ZNF331|pc|chr19:53537684:53537755:+	0	+
#Deleted in new
chr19	53538078	53538296	ENSG00000130844.16|ZNF331|pc|chr19:53538078:53538296:+	0	+
#Deleted in new
chr19	53538142	53538296	ENSG00000130844.16|ZNF331|pc|chr19:53538142:53538296:+	0	+
#Deleted in new
chr19	53538144	53538296	ENSG00000130844.16|ZNF331|pc|chr19:53538144:53538296:+	0	+
#Deleted in new
chr19	53538285	53538491	ENSG00000130844.16|ZNF331|pc|chr19:53538285:53538491:+	0	+
#Deleted in new
chr19	53538304	53538491	ENSG00000130844.16|ZNF331|pc|chr19:53538304:53538491:+	0	+
#Deleted in new
chr19	53538322	53538491	ENSG00000130844.16|ZNF331|pc|chr19:53538322:53538491:+	0	+
#Deleted in new
chr19	53538787	53538952	ENSG00000130844.16|ZNF331|pc|chr19:53538787:53538952:+	0	+
#Deleted in new
chr19	53539176	53539357	ENSG00000130844.16|ZNF331|pc|chr19:53539176:53539357:+	0	+
#Deleted in new
chr19	53539215	53539282	ENSG00000130844.16|ZNF331|pc|chr19:53539215:53539282:+	0	+
#Deleted in new
chr19	53539215	53539524	ENSG00000130844.16|ZNF331|pc|chr19:53539215:53539524:+	0	+
#Deleted in new
chr19	53554529	53554693	ENSG00000130844.16|ZNF331|pc|chr19:53554529:53554693:+	0	+
#Deleted in new
chr19	53554600	53554693	ENSG00000130844.16|ZNF331|pc|chr19:53554600:53554693:+	0	+
#Deleted in new
chr19	53554612	53554888	ENSG00000130844.16|ZNF331|pc|chr19:53554612:53554888:+	0	+
#Deleted in new
chr19	53554826	53554888	ENSG00000130844.16|ZNF331|pc|chr19:53554826:53554888:+	0	+
#Deleted in new
chr19	53555239	53555418	ENSG00000130844.16|ZNF331|pc|chr19:53555239:53555418:+	0	+
#Deleted in new
chr19	53555306	53555581	ENSG00000130844.16|ZNF331|pc|chr19:53555306:53555581:+	0	+
#Deleted in new
chr19	53555486	53555908	ENSG00000130844.16|ZNF331|pc|chr19:53555486:53555908:+	0	+
#Deleted in new
chr19	53555844	53555852	ENSG00000130844.16|ZNF331|pc|chr19:53555844:53555852:+	0	+
#Deleted in new
chr19	53555844	53555903	ENSG00000130844.16|ZNF331|pc|chr19:53555844:53555903:+	0	+
#Deleted in new
chr19	53555844	53555908	ENSG00000130844.16|ZNF331|pc|chr19:53555844:53555908:+	0	+
#Deleted in new
chr19	53563762	53563792	ENSG00000130844.16|ZNF331|pc|chr19:53563762:53563792:+	0	+
#Deleted in new
chr19	53569303	53569385	ENSG00000130844.16|ZNF331|pc|chr19:53569303:53569385:+	0	+
#Partially deleted in new
chr19	536242	536715	ENSG00000099804.8|CDC34|pc|chr19:536242:536715:+	0	+
#Deleted in new
chr19	53761960	53764199	ENSG00000269842.5|AC011453.1|lncRNA|chr19:53761960:53764199:+	0	+
#Partially deleted in new
chr19	53787886	53788169	ENSG00000269877.3|AC008753.3|lncRNA|chr19:53787886:53788169:-	0	-
#Deleted in new
chr19	53788781	53789168	ENSG00000269564.1|AC008753.2|lncRNA|chr19:53788781:53789168:+	0	+
#Partially deleted in new
chr19	53793602	53794136	ENSG00000142405.21|NLRP12|pc|chr19:53793602:53794136:-	0	-
#Partially deleted in new
chr19	53793741	53794136	ENSG00000142405.21|NLRP12|pc|chr19:53793741:53794136:-	0	-
#Partially deleted in new
chr19	53793742	53794136	ENSG00000142405.21|NLRP12|pc|chr19:53793742:53794136:-	0	-
#Deleted in new
chr19	53805593	53805783	ENSG00000142405.21|NLRP12|pc|chr19:53805593:53805783:-	0	-
#Deleted in new
chr1	95380631	95380972	ENSG00000237954.7|AL445218.1|lncRNA|chr1:95380631:95380972:-	0	-
#Deleted in new
chr1	95380631	95381000	ENSG00000237954.7|AL445218.1|lncRNA|chr1:95380631:95381000:-	0	-
#Partially deleted in new
chr19	53807494	53808705	ENSG00000142405.21|NLRP12|pc|chr19:53807494:53808705:-	0	-
#Deleted in new
chr19	53854580	53854635	ENSG00000228323.2|AC008440.1|lncRNA|chr19:53854580:53854635:-	0	-
#Deleted in new
chr19	53857877	53857964	ENSG00000228323.2|AC008440.1|lncRNA|chr19:53857877:53857964:-	0	-
#Deleted in new
chr19	53863079	53863177	ENSG00000228323.2|AC008440.1|lncRNA|chr19:53863079:53863177:-	0	-
#Partially deleted in new
chr19	53865509	53865728	ENSG00000232324.1|AC008440.3|lncRNA|chr19:53865509:53865728:+	0	+
#Deleted in new
chr19	53868908	53869107	ENSG00000228323.2|AC008440.1|lncRNA|chr19:53868908:53869107:-	0	-
#Deleted in new
chr19	53872711	53872787	ENSG00000179820.15|MYADM|pc|chr19:53872711:53872787:+	0	+
#Partially deleted in new
chr1	954003	954523	ENSG00000188976.10|NOC2L|pc|chr1:954003:954523:-	0	-
#Deleted in new
chr19	54040824	54041080	ENSG00000189068.9|VSTM1|pc|chr19:54040824:54041080:-	0	-
#Deleted in new
chr19	54040828	54041080	ENSG00000189068.9|VSTM1|pc|chr19:54040828:54041080:-	0	-
#Deleted in new
chr19	54040832	54041080	ENSG00000189068.9|VSTM1|pc|chr19:54040832:54041080:-	0	-
#Deleted in new
chr19	54040833	54041080	ENSG00000189068.9|VSTM1|pc|chr19:54040833:54041080:-	0	-
#Deleted in new
chr19	54041778	54041816	ENSG00000189068.9|VSTM1|pc|chr19:54041778:54041816:-	0	-
#Deleted in new
chr19	54042226	54042369	ENSG00000189068.9|VSTM1|pc|chr19:54042226:54042369:-	0	-
#Deleted in new
chr19	54042276	54042369	ENSG00000189068.9|VSTM1|pc|chr19:54042276:54042369:-	0	-
#Deleted in new
chr19	54048365	54048403	ENSG00000189068.9|VSTM1|pc|chr19:54048365:54048403:-	0	-
#Deleted in new
chr19	54051409	54051448	ENSG00000189068.9|VSTM1|pc|chr19:54051409:54051448:-	0	-
#Deleted in new
chr19	54076217	54076545	ENSG00000248385.7|TARM1|pc|chr19:54076217:54076545:-	0	-
#Deleted in new
chr19	54099589	54099601	ENSG00000170909.13|OSCAR|pc|chr19:54099589:54099601:-	0	-
#Deleted in new
chr19	54102653	54102686	ENSG00000170909.13|OSCAR|pc|chr19:54102653:54102686:-	0	-
#Deleted in new
chr19	54102653	54102692	ENSG00000170909.13|OSCAR|pc|chr19:54102653:54102692:-	0	-
#Partially deleted in new
chr19	54105596	54105703	ENSG00000170906.15|NDUFA3|pc|chr19:54105596:54105703:+	0	+
#Deleted in new
chr19	54108827	54108894	ENSG00000170906.15|NDUFA3|pc|chr19:54108827:54108894:+	0	+
#Deleted in new
chr19	54108827	54108929	ENSG00000170906.15|NDUFA3|pc|chr19:54108827:54108929:+	0	+
#Partially deleted in new
chr19	54109081	54109257	ENSG00000170906.15|NDUFA3|pc|chr19:54109081:54109257:+	0	+
#Deleted in new
chr19	54119510	54120392	ENSG00000237017.1|AC245052.4|lncRNA|chr19:54119510:54120392:-	0	-
#Deleted in new
chr19	541216	541252	ENSG00000099804.8|CDC34|pc|chr19:541216:541252:+	0	+
#Partially deleted in new
chr19	54189937	54190162	ENSG00000170892.10|TSEN34|pc|chr19:54189937:54190162:+	0	+
#Partially deleted in new
chr19	54193621	54194536	ENSG00000170892.10|TSEN34|pc|chr19:54193621:54194536:+	0	+
#Deleted in new
chr19	54199453	54199756	ENSG00000223660.1|AC245052.1|lncRNA|chr19:54199453:54199756:-	0	-
#Deleted in new
chr19	54199864	54199971	ENSG00000223660.1|AC245052.1|lncRNA|chr19:54199864:54199971:-	0	-
#Partially deleted in new
chr19	54201486	54202008	ENSG00000170889.13|RPS9|pc|chr19:54201486:54202008:+	0	+
#Partially deleted in new
chr19	54221617	54221786	ENSG00000204577.11|LILRB3|pc|chr19:54221617:54221786:-	0	-
#Deleted in new
chr19	54231740	54231936	ENSG00000170889.13|RPS9|pc|chr19:54231740:54231936:+	0	+
#Deleted in new
chr19	54236591	54237193	ENSG00000244482.10|LILRA6|pc|chr19:54236591:54237193:-	0	-
#Deleted in new
chr19	54238485	54238613	ENSG00000244482.10|LILRA6|pc|chr19:54238485:54238613:-	0	-
#Deleted in new
chr19	54247091	54249003	ENSG00000170889.13|RPS9|pc|chr19:54247091:54249003:+	0	+
#Split in new
chr19	54252870	54254068	ENSG00000105609.16|LILRB5|pc|chr19:54252870:54254068:-	0	-
#Deleted in new
chr19	54254017	54254065	ENSG00000105609.16|LILRB5|pc|chr19:54254017:54254065:-	0	-
#Deleted in new
chr19	54254017	54254068	ENSG00000105609.16|LILRB5|pc|chr19:54254017:54254068:-	0	-
#Duplicated in new
chr19	54276806	54277600	ENSG00000131042.14|LILRB2|pc|chr19:54276806:54277600:-	0	-
#Deleted in new
chr19	54308914	54309571	ENSG00000275210.1|AC245884.11|lncRNA|chr19:54308914:54309571:-	0	-
#Deleted in new
chr19	54310303	54310542	ENSG00000275210.1|AC245884.11|lncRNA|chr19:54310303:54310542:-	0	-
#Duplicated in new
chr19	54313016	54313139	ENSG00000187116.13|LILRA5|pc|chr19:54313016:54313139:-	0	-
#Deleted in new
chr19	54356927	54356966	ENSG00000167613.15|LAIR1|pc|chr19:54356927:54356966:-	0	-
#Partially deleted in new
chr19	54356927	54357629	ENSG00000167613.15|LAIR1|pc|chr19:54356927:54357629:-	0	-
#Deleted in new
chr19	54358005	54358625	ENSG00000167613.15|LAIR1|pc|chr19:54358005:54358625:-	0	-
#Deleted in new
chr19	54359842	54360072	ENSG00000167613.15|LAIR1|pc|chr19:54359842:54360072:-	0	-
#Deleted in new
chr19	54360021	54360072	ENSG00000167613.15|LAIR1|pc|chr19:54360021:54360072:-	0	-
#Deleted in new
chr19	54368188	54368700	ENSG00000167613.15|LAIR1|pc|chr19:54368188:54368700:-	0	-
#Deleted in new
chr19	54368311	54368599	ENSG00000167613.15|LAIR1|pc|chr19:54368311:54368599:-	0	-
#Deleted in new
chr19	54370261	54370491	ENSG00000167613.15|LAIR1|pc|chr19:54370261:54370491:-	0	-
#Deleted in new
chr19	54370261	54370558	ENSG00000167613.15|LAIR1|pc|chr19:54370261:54370558:-	0	-
#Deleted in new
chr1	954425	954523	ENSG00000188976.10|NOC2L|pc|chr1:954425:954523:-	0	-
#Partially deleted in new
chr19	54431098	54433711	ENSG00000167614.13|TTYH1|pc|chr19:54431098:54433711:+	0	+
#Deleted in new
chr19	54438664	54439544	ENSG00000267838.2|AC245884.8|lncRNA|chr19:54438664:54439544:-	0	-
#Deleted in new
chr19	54444812	54445179	ENSG00000226696.5|LENG8-AS1|lncRNA|chr19:54444812:54445179:-	0	-
#Deleted in new
chr19	54445035	54445179	ENSG00000226696.5|LENG8-AS1|lncRNA|chr19:54445035:54445179:-	0	-
#Deleted in new
chr19	54448164	54448215	ENSG00000226696.5|LENG8-AS1|lncRNA|chr19:54448164:54448215:-	0	-
#Deleted in new
chr19	54448164	54448602	ENSG00000226696.5|LENG8-AS1|lncRNA|chr19:54448164:54448602:-	0	-
#Deleted in new
chr19	54448561	54449014	ENSG00000226696.5|LENG8-AS1|lncRNA|chr19:54448561:54449014:-	0	-
#Partially deleted in new
chr19	54448632	54449045	ENSG00000226696.5|LENG8-AS1|lncRNA|chr19:54448632:54449045:-	0	-
#Deleted in new
chr19	54497878	54498257	ENSG00000167618.9|LAIR2|pc|chr19:54497878:54498257:+	0	+
#Deleted in new
chr19	54509034	54509085	ENSG00000167618.9|LAIR2|pc|chr19:54509034:54509085:+	0	+
#Deleted in new
chr19	54510525	54510687	ENSG00000167618.9|LAIR2|pc|chr19:54510525:54510687:+	0	+
#Deleted in new
chr19	54532691	54532831	ENSG00000104970.10|KIR3DX1|pc|chr19:54532691:54532831:+	0	+
#Deleted in new
chr19	54532691	54533078	ENSG00000104970.10|KIR3DX1|pc|chr19:54532691:54533078:+	0	+
#Deleted in new
chr19	54532759	54532831	ENSG00000104970.10|KIR3DX1|pc|chr19:54532759:54532831:+	0	+
#Deleted in new
chr19	54532790	54532831	ENSG00000104970.10|KIR3DX1|pc|chr19:54532790:54532831:+	0	+
#Deleted in new
chr19	54533042	54533078	ENSG00000104970.10|KIR3DX1|pc|chr19:54533042:54533078:+	0	+
#Deleted in new
chr19	54537974	54538025	ENSG00000104970.10|KIR3DX1|pc|chr19:54537974:54538025:+	0	+
#Deleted in new
chr19	54537974	54538660	ENSG00000104970.10|KIR3DX1|pc|chr19:54537974:54538660:+	0	+
#Partially deleted in new
chr19	54543028	54545739	ENSG00000104970.10|KIR3DX1|pc|chr19:54543028:54545739:+	0	+
#Deleted in new
chr19	54543264	54543428	ENSG00000104970.10|KIR3DX1|pc|chr19:54543264:54543428:+	0	+
#Deleted in new
chr19	54543375	54543428	ENSG00000104970.10|KIR3DX1|pc|chr19:54543375:54543428:+	0	+
#Partially deleted in new
chr19	54543536	54543732	ENSG00000104970.10|KIR3DX1|pc|chr19:54543536:54543732:+	0	+
#Partially deleted in new
chr19	54543536	54543815	ENSG00000104970.10|KIR3DX1|pc|chr19:54543536:54543815:+	0	+
#Partially deleted in new
chr19	54543536	54545771	ENSG00000104970.10|KIR3DX1|pc|chr19:54543536:54545771:+	0	+
#Split in new
chr19	54572919	54573435	ENSG00000239998.5|LILRA2|pc|chr19:54572919:54573435:+	0	+
#Split in new
chr19	54573027	54573435	ENSG00000239998.5|LILRA2|pc|chr19:54573027:54573435:+	0	+
#Deleted in new
chr19	54576071	54576109	ENSG00000239998.5|LILRA2|pc|chr19:54576071:54576109:+	0	+
#Duplicated in new
chr19	54587200	54587547	ENSG00000239998.5|LILRA2|pc|chr19:54587200:54587547:+	0	+
#Duplicated in new
chr19	54587200	54587558	ENSG00000239998.5|LILRA2|pc|chr19:54587200:54587558:+	0	+
#Duplicated in new
chr19	54587200	54587560	ENSG00000239998.5|LILRA2|pc|chr19:54587200:54587560:+	0	+
#Split in new
chr19	54587200	54590287	ENSG00000239998.5|LILRA2|pc|chr19:54587200:54590287:+	0	+
#Deleted in new
chr19	54589440	54590287	ENSG00000269271.1|AC245036.5|lncRNA|chr19:54589440:54590287:+	0	+
#Partially deleted in new
chr19	54599235	54599716	ENSG00000104974.11|LILRA1|pc|chr19:54599235:54599716:+	0	+
#Partially deleted in new
chr19	54599235	54599720	ENSG00000104974.11|LILRA1|pc|chr19:54599235:54599720:+	0	+
#Deleted in new
chr19	54617157	54617349	ENSG00000104972.15|LILRB1|pc|chr19:54617157:54617349:+	0	+
#Duplicated in new
chr19	54634363	54634402	ENSG00000104972.15|LILRB1|pc|chr19:54634363:54634402:+	0	+
#Split in new
chr19	54635721	54636076	ENSG00000224730.1|LILRB1-AS1|lncRNA|chr19:54635721:54636076:-	0	-
#Deleted in new
chr19	54638693	54638892	ENSG00000224730.1|LILRB1-AS1|lncRNA|chr19:54638693:54638892:-	0	-
#Deleted in new
chr19	54662127	54662188	ENSG00000186818.12|LILRB4|pc|chr19:54662127:54662188:+	0	+
#Deleted in new
chr19	54662157	54662188	ENSG00000186818.12|LILRB4|pc|chr19:54662157:54662188:+	0	+
#Deleted in new
chr19	54662508	54662547	ENSG00000186818.12|LILRB4|pc|chr19:54662508:54662547:+	0	+
#Partially deleted in new
chr19	54667872	54670359	ENSG00000186818.12|LILRB4|pc|chr19:54667872:54670359:+	0	+
#Deleted in new
chr19	54724478	54724530	ENSG00000242019.1|KIR3DL3|pc|chr19:54724478:54724530:+	0	+
#Deleted in new
chr19	54724495	54724530	ENSG00000215765.3|AC245128.1|lncRNA|chr19:54724495:54724530:+	0	+
#Deleted in new
chr19	54738514	54738579	ENSG00000243772.7|KIR2DL3|pc|chr19:54738514:54738579:+	0	+
#Deleted in new
chr19	54739506	54739542	ENSG00000243772.7|KIR2DL3|pc|chr19:54739506:54739542:+	0	+
#Deleted in new
chr19	54747334	54747385	ENSG00000243772.7|KIR2DL3|pc|chr19:54747334:54747385:+	0	+
#Duplicated in new
chr1	95476743	95476980	ENSG00000233907.1|LINC01761|lncRNA|chr1:95476743:95476980:+	0	+
#Deleted in new
chr19	54769810	54769884	ENSG00000125498.19|KIR2DL1|pc|chr19:54769810:54769884:+	0	+
#Deleted in new
chr19	54769824	54769884	ENSG00000125498.19|KIR2DL1|pc|chr19:54769824:54769884:+	0	+
#Deleted in new
chr19	54770848	54770884	ENSG00000125498.19|KIR2DL1|pc|chr19:54770848:54770884:+	0	+
#Deleted in new
chr19	54770848	54770884	ENSG00000215765.3|AC245128.1|lncRNA|chr19:54770848:54770884:+	0	+
#Deleted in new
chr1	95477338	95479356	ENSG00000233907.1|LINC01761|lncRNA|chr1:95477338:95479356:+	0	+
#Deleted in new
chr19	54778611	54778662	ENSG00000125498.19|KIR2DL1|pc|chr19:54778611:54778662:+	0	+
#Deleted in new
chr19	54780088	54780166	ENSG00000125498.19|KIR2DL1|pc|chr19:54780088:54780166:+	0	+
#Deleted in new
chr19	54797941	54798285	ENSG00000215765.3|AC245128.1|lncRNA|chr19:54797941:54798285:+	0	+
#Deleted in new
chr19	54808832	54808883	ENSG00000189013.14|KIR2DL4|pc|chr19:54808832:54808883:+	0	+
#Deleted in new
chr19	54816467	54816534	ENSG00000167633.18|KIR3DL1|pc|chr19:54816467:54816534:+	0	+
#Deleted in new
chr19	54816486	54816534	ENSG00000167633.18|KIR3DL1|pc|chr19:54816486:54816534:+	0	+
#Deleted in new
chr19	54816489	54816534	ENSG00000167633.18|KIR3DL1|pc|chr19:54816489:54816534:+	0	+
#Deleted in new
chr19	54817533	54817569	ENSG00000167633.18|KIR3DL1|pc|chr19:54817533:54817569:+	0	+
#Deleted in new
chr19	54825027	54825078	ENSG00000167633.18|KIR3DL1|pc|chr19:54825027:54825078:+	0	+
#Deleted in new
chr19	54850442	54850509	ENSG00000240403.5|KIR3DL2|pc|chr19:54850442:54850509:+	0	+
#Deleted in new
chr19	54850475	54850509	ENSG00000240403.5|KIR3DL2|pc|chr19:54850475:54850509:+	0	+
#Deleted in new
chr19	54851219	54851255	ENSG00000240403.5|KIR3DL2|pc|chr19:54851219:54851255:+	0	+
#Deleted in new
chr19	54859078	54859129	ENSG00000240403.5|KIR3DL2|pc|chr19:54859078:54859129:+	0	+
#Deleted in new
chr19	54875329	54875365	ENSG00000186431.18|FCAR|pc|chr19:54875329:54875365:+	0	+
#Deleted in new
chr19	54880835	54880913	ENSG00000186431.18|FCAR|pc|chr19:54880835:54880913:+	0	+
#Partially deleted in new
chr19	54888006	54889067	ENSG00000186431.18|FCAR|pc|chr19:54888006:54889067:+	0	+
#Deleted in new
chr19	54888975	54889067	ENSG00000186431.18|FCAR|pc|chr19:54888975:54889067:+	0	+
#Partially deleted in new
chr19	54889648	54890472	ENSG00000186431.18|FCAR|pc|chr19:54889648:54890472:+	0	+
#Deleted in new
chr19	54890672	54891420	ENSG00000268734.1|AC245128.3|lncRNA|chr19:54890672:54891420:+	0	+
#Deleted in new
chr19	54915749	54916140	ENSG00000189430.12|NCR1|pc|chr19:54915749:54916140:+	0	+
#Deleted in new
chr19	54923508	54923872	ENSG00000167634.12|NLRP7|pc|chr19:54923508:54923872:-	0	-
#Deleted in new
chr19	54923509	54923872	ENSG00000167634.12|NLRP7|pc|chr19:54923509:54923872:-	0	-
#Deleted in new
chr19	54923514	54923872	ENSG00000167634.12|NLRP7|pc|chr19:54923514:54923872:-	0	-
#Deleted in new
chr19	54923651	54923872	ENSG00000167634.12|NLRP7|pc|chr19:54923651:54923872:-	0	-
#Deleted in new
chr19	54923652	54923872	ENSG00000167634.12|NLRP7|pc|chr19:54923652:54923872:-	0	-
#Deleted in new
chr19	54940930	54941005	ENSG00000167634.12|NLRP7|pc|chr19:54940930:54941005:-	0	-
#Deleted in new
chr19	54940992	54941005	ENSG00000167634.12|NLRP7|pc|chr19:54940992:54941005:-	0	-
#Deleted in new
chr19	54947468	54947497	ENSG00000167634.12|NLRP7|pc|chr19:54947468:54947497:-	0	-
#Deleted in new
chr19	54947468	54947505	ENSG00000167634.12|NLRP7|pc|chr19:54947468:54947505:-	0	-
#Deleted in new
chr19	54947631	54947758	ENSG00000167634.12|NLRP7|pc|chr19:54947631:54947758:-	0	-
#Deleted in new
chr19	54947642	54947849	ENSG00000167634.12|NLRP7|pc|chr19:54947642:54947849:-	0	-
#Deleted in new
chr19	54953129	54953285	ENSG00000022556.15|NLRP2|pc|chr19:54953129:54953285:+	0	+
#Deleted in new
chr19	54953167	54953369	ENSG00000022556.15|NLRP2|pc|chr19:54953167:54953369:+	0	+
#Deleted in new
chr19	54965069	54965129	ENSG00000022556.15|NLRP2|pc|chr19:54965069:54965129:+	0	+
#Deleted in new
chr19	54965251	54965377	ENSG00000022556.15|NLRP2|pc|chr19:54965251:54965377:+	0	+
#Deleted in new
chr19	54965284	54965377	ENSG00000022556.15|NLRP2|pc|chr19:54965284:54965377:+	0	+
#Deleted in new
chr19	54965328	54965377	ENSG00000022556.15|NLRP2|pc|chr19:54965328:54965377:+	0	+
#Deleted in new
chr19	54965335	54965377	ENSG00000022556.15|NLRP2|pc|chr19:54965335:54965377:+	0	+
#Deleted in new
chr19	54965343	54965377	ENSG00000022556.15|NLRP2|pc|chr19:54965343:54965377:+	0	+
#Deleted in new
chr19	54966039	54966243	ENSG00000167634.12|NLRP7|pc|chr19:54966039:54966243:-	0	-
#Deleted in new
chr19	54966039	54966253	ENSG00000167634.12|NLRP7|pc|chr19:54966039:54966253:-	0	-
#Deleted in new
chr19	54966039	54966312	ENSG00000167634.12|NLRP7|pc|chr19:54966039:54966312:-	0	-
#Deleted in new
chr19	54966342	54966467	ENSG00000022556.15|NLRP2|pc|chr19:54966342:54966467:+	0	+
#Deleted in new
chr19	54966373	54966467	ENSG00000022556.15|NLRP2|pc|chr19:54966373:54966467:+	0	+
#Deleted in new
chr19	54966373	54966471	ENSG00000022556.15|NLRP2|pc|chr19:54966373:54966471:+	0	+
#Deleted in new
chr19	54966405	54966467	ENSG00000022556.15|NLRP2|pc|chr19:54966405:54966467:+	0	+
#Deleted in new
chr19	54976859	54976958	ENSG00000022556.15|NLRP2|pc|chr19:54976859:54976958:+	0	+
#Deleted in new
chr19	54977751	54977799	ENSG00000022556.15|NLRP2|pc|chr19:54977751:54977799:+	0	+
#Deleted in new
chr19	54977751	54977823	ENSG00000022556.15|NLRP2|pc|chr19:54977751:54977823:+	0	+
#Deleted in new
chr19	54981616	54981639	ENSG00000022556.15|NLRP2|pc|chr19:54981616:54981639:+	0	+
#Deleted in new
chr19	54981616	54981646	ENSG00000022556.15|NLRP2|pc|chr19:54981616:54981646:+	0	+
#Deleted in new
chr19	54981616	54981682	ENSG00000022556.15|NLRP2|pc|chr19:54981616:54981682:+	0	+
#Deleted in new
chr19	54981625	54981682	ENSG00000022556.15|NLRP2|pc|chr19:54981625:54981682:+	0	+
#Deleted in new
chr19	54989556	54989752	ENSG00000022556.15|NLRP2|pc|chr19:54989556:54989752:+	0	+
#Partially deleted in new
chr19	54990214	54990393	ENSG00000022556.15|NLRP2|pc|chr19:54990214:54990393:+	0	+
#Partially deleted in new
chr19	54990625	54991165	ENSG00000022556.15|NLRP2|pc|chr19:54990625:54991165:+	0	+
#Deleted in new
chr19	54991499	54991549	ENSG00000022556.15|NLRP2|pc|chr19:54991499:54991549:+	0	+
#Deleted in new
chr19	54993217	54994439	ENSG00000022556.15|NLRP2|pc|chr19:54993217:54994439:+	0	+
#Deleted in new
chr19	54994268	54994439	ENSG00000022556.15|NLRP2|pc|chr19:54994268:54994439:+	0	+
#Deleted in new
chr19	54994268	54994440	ENSG00000022556.15|NLRP2|pc|chr19:54994268:54994440:+	0	+
#Deleted in new
chr19	55006192	55006299	ENSG00000267265.5|AC011476.3|lncRNA|chr19:55006192:55006299:+	0	+
#Deleted in new
chr19	55006204	55006289	ENSG00000267265.5|AC011476.3|lncRNA|chr19:55006204:55006289:+	0	+
#Deleted in new
chr19	55006416	55006464	ENSG00000267265.5|AC011476.3|lncRNA|chr19:55006416:55006464:+	0	+
#Split in new
chr19	55032505	55032865	ENSG00000088053.11|GP6|pc|chr19:55032505:55032865:-	0	-
#Deleted in new
chr19	55039107	55039264	ENSG00000160439.15|RDH13|pc|chr19:55039107:55039264:-	0	-
#Deleted in new
chr19	55039110	55039437	ENSG00000160439.15|RDH13|pc|chr19:55039110:55039437:-	0	-
#Deleted in new
chr19	55039110	55039725	ENSG00000160439.15|RDH13|pc|chr19:55039110:55039725:-	0	-
#Deleted in new
chr19	55040312	55041024	ENSG00000160439.15|RDH13|pc|chr19:55040312:55041024:-	0	-
#Deleted in new
chr19	55040453	55043107	ENSG00000160439.15|RDH13|pc|chr19:55040453:55043107:-	0	-
#Deleted in new
chr19	55041245	55041889	ENSG00000160439.15|RDH13|pc|chr19:55041245:55041889:-	0	-
#Deleted in new
chr19	55041245	55042004	ENSG00000160439.15|RDH13|pc|chr19:55041245:55042004:-	0	-
#Deleted in new
chr19	55042038	55042136	ENSG00000160439.15|RDH13|pc|chr19:55042038:55042136:-	0	-
#Deleted in new
chr19	55042799	55042920	ENSG00000267265.5|AC011476.3|lncRNA|chr19:55042799:55042920:+	0	+
#Deleted in new
chr19	55042831	55042920	ENSG00000267265.5|AC011476.3|lncRNA|chr19:55042831:55042920:+	0	+
#Deleted in new
chr19	55042831	55043251	ENSG00000267265.5|AC011476.3|lncRNA|chr19:55042831:55043251:+	0	+
#Deleted in new
chr19	55044104	55044317	ENSG00000267265.5|AC011476.3|lncRNA|chr19:55044104:55044317:+	0	+
#Deleted in new
chr19	55046473	55046898	ENSG00000267265.5|AC011476.3|lncRNA|chr19:55046473:55046898:+	0	+
#Deleted in new
chr19	55050699	55051002	ENSG00000160439.15|RDH13|pc|chr19:55050699:55051002:-	0	-
#Deleted in new
chr19	55050873	55051002	ENSG00000160439.15|RDH13|pc|chr19:55050873:55051002:-	0	-
#Deleted in new
chr19	55053752	55053928	ENSG00000267149.2|AC011476.2|lncRNA|chr19:55053752:55053928:-	0	-
#Deleted in new
chr19	55063507	55063999	ENSG00000160439.15|RDH13|pc|chr19:55063507:55063999:-	0	-
#Deleted in new
chr19	55063751	55063999	ENSG00000160439.15|RDH13|pc|chr19:55063751:55063999:-	0	-
#Deleted in new
chr19	55063863	55063999	ENSG00000160439.15|RDH13|pc|chr19:55063863:55063999:-	0	-
#Deleted in new
chr19	55063900	55064412	ENSG00000160439.15|RDH13|pc|chr19:55063900:55064412:-	0	-
#Deleted in new
chr19	55063947	55064412	ENSG00000160439.15|RDH13|pc|chr19:55063947:55064412:-	0	-
#Deleted in new
chr19	55064039	55064412	ENSG00000160439.15|RDH13|pc|chr19:55064039:55064412:-	0	-
#Deleted in new
chr19	55064295	55064342	ENSG00000160439.15|RDH13|pc|chr19:55064295:55064342:-	0	-
#Deleted in new
chr19	55064295	55064368	ENSG00000160439.15|RDH13|pc|chr19:55064295:55064368:-	0	-
#Deleted in new
chr19	55064295	55064393	ENSG00000160439.15|RDH13|pc|chr19:55064295:55064393:-	0	-
#Deleted in new
chr19	55064295	55064412	ENSG00000160439.15|RDH13|pc|chr19:55064295:55064412:-	0	-
#Deleted in new
chr19	55068412	55068530	ENSG00000160439.15|RDH13|pc|chr19:55068412:55068530:-	0	-
#Deleted in new
chr19	55068758	55068828	ENSG00000160439.15|RDH13|pc|chr19:55068758:55068828:-	0	-
#Deleted in new
chr19	55069321	55069491	ENSG00000160439.15|RDH13|pc|chr19:55069321:55069491:-	0	-
#Deleted in new
chr19	55069321	55069502	ENSG00000160439.15|RDH13|pc|chr19:55069321:55069502:-	0	-
#Deleted in new
chr19	55069321	55069520	ENSG00000160439.15|RDH13|pc|chr19:55069321:55069520:-	0	-
#Deleted in new
chr19	55069321	55069523	ENSG00000160439.15|RDH13|pc|chr19:55069321:55069523:-	0	-
#Deleted in new
chr19	55069321	55069529	ENSG00000160439.15|RDH13|pc|chr19:55069321:55069529:-	0	-
#Deleted in new
chr19	55069321	55069531	ENSG00000160439.15|RDH13|pc|chr19:55069321:55069531:-	0	-
#Deleted in new
chr19	55069321	55069540	ENSG00000160439.15|RDH13|pc|chr19:55069321:55069540:-	0	-
#Deleted in new
chr19	55069367	55069540	ENSG00000160439.15|RDH13|pc|chr19:55069367:55069540:-	0	-
#Deleted in new
chr19	55069693	55069892	ENSG00000160439.15|RDH13|pc|chr19:55069693:55069892:-	0	-
#Deleted in new
chr19	55071162	55071291	ENSG00000160439.15|RDH13|pc|chr19:55071162:55071291:-	0	-
#Deleted in new
chr19	55072019	55072260	ENSG00000131037.14|EPS8L1|pc|chr19:55072019:55072260:+	0	+
#Deleted in new
chr19	55096851	55097064	ENSG00000125503.12|PPP1R12C|pc|chr19:55096851:55097064:-	0	-
#Deleted in new
chr19	55140651	55140699	ENSG00000105048.16|TNNT1|pc|chr19:55140651:55140699:-	0	-
#Deleted in new
chr19	55162647	55162807	ENSG00000167646.13|DNAAF3|pc|chr19:55162647:55162807:-	0	-
#Deleted in new
chr19	55162647	55162818	ENSG00000167646.13|DNAAF3|pc|chr19:55162647:55162818:-	0	-
#Deleted in new
chr19	55162751	55162801	ENSG00000267577.1|AC010327.3|lncRNA|chr19:55162751:55162801:+	0	+
#Deleted in new
chr19	55171686	55171781	ENSG00000129990.14|SYT5|pc|chr19:55171686:55171781:-	0	-
#Deleted in new
chr19	55177083	55177540	ENSG00000267577.1|AC010327.3|lncRNA|chr19:55177083:55177540:+	0	+
#Deleted in new
chr19	55216659	55216709	ENSG00000267649.1|AC010327.4|lncRNA|chr19:55216659:55216709:+	0	+
#Partially deleted in new
chr19	55216681	55217429	ENSG00000267649.1|AC010327.4|lncRNA|chr19:55216681:55217429:+	0	+
#Deleted in new
chr19	55220809	55221616	ENSG00000267649.1|AC010327.4|lncRNA|chr19:55220809:55221616:+	0	+
#Partially deleted in new
chr19	55232074	55233194	ENSG00000105063.18|PPP6R1|pc|chr19:55232074:55233194:-	0	-
#Deleted in new
chr19	55282071	55282208	ENSG00000160469.16|BRSK1|pc|chr19:55282071:55282208:+	0	+
#Deleted in new
chr19	55282203	55282208	ENSG00000160469.16|BRSK1|pc|chr19:55282203:55282208:+	0	+
#Deleted in new
chr19	55325271	55325301	ENSG00000180061.9|TMEM150B|pc|chr19:55325271:55325301:-	0	-
#Deleted in new
chr19	55325271	55325305	ENSG00000180061.9|TMEM150B|pc|chr19:55325271:55325305:-	0	-
#Deleted in new
chr19	55325271	55325311	ENSG00000180061.9|TMEM150B|pc|chr19:55325271:55325311:-	0	-
#Deleted in new
chr19	55325271	55325340	ENSG00000180061.9|TMEM150B|pc|chr19:55325271:55325340:-	0	-
#Deleted in new
chr19	55333903	55334048	ENSG00000180061.9|TMEM150B|pc|chr19:55333903:55334048:-	0	-
#Deleted in new
chr19	55349305	55350803	ENSG00000160471.12|COX6B2|pc|chr19:55349305:55350803:-	0	-
#Deleted in new
chr19	55349701	55350800	ENSG00000160471.12|COX6B2|pc|chr19:55349701:55350800:-	0	-
#Deleted in new
chr19	55349707	55350800	ENSG00000160471.12|COX6B2|pc|chr19:55349707:55350800:-	0	-
#Deleted in new
chr19	55350412	55350800	ENSG00000160471.12|COX6B2|pc|chr19:55350412:55350800:-	0	-
#Deleted in new
chr19	55351698	55351890	ENSG00000160471.12|COX6B2|pc|chr19:55351698:55351890:-	0	-
#Partially deleted in new
chr19	55353311	55353393	ENSG00000160471.12|COX6B2|pc|chr19:55353311:55353393:-	0	-
#Partially deleted in new
chr19	55353311	55353393	ENSG00000267706.3|AC020922.1|pc|chr19:55353311:55353393:-	0	-
#Deleted in new
chr1	95538581	95538692	ENSG00000228971.2|AL356479.1|lncRNA|chr1:95538581:95538692:+	0	+
#Partially deleted in new
chr19	55386569	55388048	ENSG00000108107.14|RPL28|pc|chr19:55386569:55388048:+	0	+
#Partially deleted in new
chr19	55386569	55392100	ENSG00000108107.14|RPL28|pc|chr19:55386569:55392100:+	0	+
#Deleted in new
chr19	55386766	55387231	ENSG00000108107.14|RPL28|pc|chr19:55386766:55387231:+	0	+
#Deleted in new
chr19	55387284	55387610	ENSG00000108107.14|RPL28|pc|chr19:55387284:55387610:+	0	+
#Partially deleted in new
chr19	55388242	55392085	ENSG00000108107.14|RPL28|pc|chr19:55388242:55392085:+	0	+
#Deleted in new
chr19	55391553	55391803	ENSG00000108107.14|RPL28|pc|chr19:55391553:55391803:+	0	+
#Deleted in new
chr19	55402942	55403250	ENSG00000108107.14|RPL28|pc|chr19:55402942:55403250:+	0	+
#Partially deleted in new
chr19	55403907	55404144	ENSG00000108106.13|UBE2S|pc|chr19:55403907:55404144:-	0	-
#Deleted in new
chr19	55457091	55457212	ENSG00000063241.7|ISOC2|pc|chr19:55457091:55457212:-	0	-
#Deleted in new
chr19	55459716	55460031	ENSG00000063241.7|ISOC2|pc|chr19:55459716:55460031:-	0	-
#Deleted in new
chr19	55461511	55461569	ENSG00000063241.7|ISOC2|pc|chr19:55461511:55461569:-	0	-
#Deleted in new
chr19	55461511	55461624	ENSG00000063241.7|ISOC2|pc|chr19:55461511:55461624:-	0	-
#Deleted in new
chr19	55461511	55461626	ENSG00000063241.7|ISOC2|pc|chr19:55461511:55461626:-	0	-
#Deleted in new
chr19	55461511	55461642	ENSG00000063241.7|ISOC2|pc|chr19:55461511:55461642:-	0	-
#Deleted in new
chr19	55461511	55461645	ENSG00000063241.7|ISOC2|pc|chr19:55461511:55461645:-	0	-
#Deleted in new
chr19	55461511	55462343	ENSG00000063241.7|ISOC2|pc|chr19:55461511:55462343:-	0	-
#Deleted in new
chr19	55475982	55476482	ENSG00000269859.1|AC008735.3|lncRNA|chr19:55475982:55476482:-	0	-
#Deleted in new
chr19	55479833	55479917	ENSG00000197483.9|ZNF628|pc|chr19:55479833:55479917:+	0	+
#Partially deleted in new
chr19	55490771	55492856	ENSG00000179954.15|SSC5D|pc|chr19:55490771:55492856:+	0	+
#Deleted in new
chr19	55595619	55595734	ENSG00000179943.7|FIZ1|pc|chr19:55595619:55595734:-	0	-
#Partially deleted in new
chr19	55612489	55613097	ENSG00000276488.1|AC008735.4|lncRNA|chr19:55612489:55613097:-	0	-
#Partially deleted in new
chr19	5561631	5561736	ENSG00000223573.6|TINCR|pc|chr19:5561631:5561736:-	0	-
#Deleted in new
chr19	55635015	55635712	ENSG00000213015.8|ZNF580|pc|chr19:55635015:55635712:+	0	+
#Deleted in new
chr19	55635458	55635712	ENSG00000171425.9|ZNF581|pc|chr19:55635458:55635712:+	0	+
#Deleted in new
chr19	55643809	55643840	ENSG00000171425.9|ZNF581|pc|chr19:55643809:55643840:+	0	+
#Deleted in new
chr19	55670631	55670740	ENSG00000267096.1|AC008735.1|lncRNA|chr19:55670631:55670740:+	0	+
#Deleted in new
chr19	55671376	55672069	ENSG00000267096.1|AC008735.1|lncRNA|chr19:55671376:55672069:+	0	+
#Deleted in new
chr19	55680675	55680769	ENSG00000063245.14|EPN1|pc|chr19:55680675:55680769:+	0	+
#Deleted in new
chr19	55694117	55694558	ENSG00000267117.1|AC010525.1|lncRNA|chr19:55694117:55694558:-	0	-
#Split in new
chr19	55695147	55709533	ENSG00000063245.14|EPN1|pc|chr19:55695147:55709533:+	0	+
#Partially deleted in new
chr19	55709722	55709858	ENSG00000063245.14|EPN1|pc|chr19:55709722:55709858:+	0	+
#Deleted in new
chr19	55711432	55711547	ENSG00000185792.9|NLRP9|pc|chr19:55711432:55711547:-	0	-
#Deleted in new
chr19	55759013	55759175	ENSG00000223638.3|RFPL4A|pc|chr19:55759013:55759175:+	0	+
#Deleted in new
chr19	55769140	55769175	ENSG00000229292.1|RFPL4AL1|pc|chr19:55769140:55769175:+	0	+
#Partially deleted in new
chr19	55785396	55785871	ENSG00000179873.14|NLRP11|pc|chr19:55785396:55785871:-	0	-
#Partially deleted in new
chr19	55785403	55785871	ENSG00000179873.14|NLRP11|pc|chr19:55785403:55785871:-	0	-
#Deleted in new
chr19	55792300	55792471	ENSG00000179873.14|NLRP11|pc|chr19:55792300:55792471:-	0	-
#Deleted in new
chr19	55792369	55792471	ENSG00000179873.14|NLRP11|pc|chr19:55792369:55792471:-	0	-
#Deleted in new
chr19	55798228	55798304	ENSG00000179873.14|NLRP11|pc|chr19:55798228:55798304:-	0	-
#Deleted in new
chr19	55798228	55798337	ENSG00000179873.14|NLRP11|pc|chr19:55798228:55798337:-	0	-
#Deleted in new
chr19	55801053	55801176	ENSG00000179873.14|NLRP11|pc|chr19:55801053:55801176:-	0	-
#Deleted in new
chr19	55801571	55801739	ENSG00000179873.14|NLRP11|pc|chr19:55801571:55801739:-	0	-
#Deleted in new
chr19	55807852	55808014	ENSG00000179873.14|NLRP11|pc|chr19:55807852:55808014:-	0	-
#Deleted in new
chr19	55831962	55831987	ENSG00000179873.14|NLRP11|pc|chr19:55831962:55831987:-	0	-
#Deleted in new
chr19	55831962	55831994	ENSG00000179873.14|NLRP11|pc|chr19:55831962:55831994:-	0	-
#Deleted in new
chr19	55831962	55832094	ENSG00000179873.14|NLRP11|pc|chr19:55831962:55832094:-	0	-
#Deleted in new
chr19	55832825	55832915	ENSG00000179873.14|NLRP11|pc|chr19:55832825:55832915:-	0	-
#Partially deleted in new
chr19	55836577	55836934	ENSG00000160505.15|NLRP4|pc|chr19:55836577:55836934:+	0	+
#Deleted in new
chr19	55836709	55836800	ENSG00000179873.14|NLRP11|pc|chr19:55836709:55836800:-	0	-
#Deleted in new
chr19	55836894	55836934	ENSG00000160505.15|NLRP4|pc|chr19:55836894:55836934:+	0	+
#Deleted in new
chr19	5588907	5589020	ENSG00000130254.11|SAFB2|pc|chr19:5588907:5589020:-	0	-
#Deleted in new
chr19	55891698	55892121	ENSG00000173572.11|NLRP13|pc|chr19:55891698:55892121:-	0	-
#Deleted in new
chr19	55910562	55910733	ENSG00000173572.11|NLRP13|pc|chr19:55910562:55910733:-	0	-
#Partially deleted in new
chr19	5591295	5591793	ENSG00000130254.11|SAFB2|pc|chr19:5591295:5591793:-	0	-
#Deleted in new
chr19	55923913	55923979	ENSG00000173572.11|NLRP13|pc|chr19:55923913:55923979:-	0	-
#Deleted in new
chr19	55924589	55924658	ENSG00000173572.11|NLRP13|pc|chr19:55924589:55924658:-	0	-
#Deleted in new
chr19	55924966	55925035	ENSG00000173572.11|NLRP13|pc|chr19:55924966:55925035:-	0	-
#Deleted in new
chr19	55931992	55932311	ENSG00000173572.11|NLRP13|pc|chr19:55931992:55932311:-	0	-
#Deleted in new
chr19	55931992	55932336	ENSG00000173572.11|NLRP13|pc|chr19:55931992:55932336:-	0	-
#Deleted in new
chr19	5593630	5593705	ENSG00000130254.11|SAFB2|pc|chr19:5593630:5593705:-	0	-
#Deleted in new
chr19	55947831	55948269	ENSG00000179709.8|NLRP8|pc|chr19:55947831:55948269:+	0	+
#Deleted in new
chr19	55947902	55948269	ENSG00000179709.8|NLRP8|pc|chr19:55947902:55948269:+	0	+
#Deleted in new
chr19	55952537	55952612	ENSG00000179709.8|NLRP8|pc|chr19:55952537:55952612:+	0	+
#Deleted in new
chr19	55962066	55962237	ENSG00000179709.8|NLRP8|pc|chr19:55962066:55962237:+	0	+
#Deleted in new
chr19	55966212	55966380	ENSG00000179709.8|NLRP8|pc|chr19:55966212:55966380:+	0	+
#Deleted in new
chr19	55970543	55970696	ENSG00000179709.8|NLRP8|pc|chr19:55970543:55970696:+	0	+
#Deleted in new
chr19	55987813	55987913	ENSG00000179709.8|NLRP8|pc|chr19:55987813:55987913:+	0	+
#Deleted in new
chr19	55987813	55988629	ENSG00000179709.8|NLRP8|pc|chr19:55987813:55988629:+	0	+
#Deleted in new
chr19	55999725	55999787	ENSG00000171487.14|NLRP5|pc|chr19:55999725:55999787:+	0	+
#Deleted in new
chr19	56003715	56004095	ENSG00000171487.14|NLRP5|pc|chr19:56003715:56004095:+	0	+
#Deleted in new
chr19	56003734	56004095	ENSG00000171487.14|NLRP5|pc|chr19:56003734:56004095:+	0	+
#Deleted in new
chr19	56008787	56008853	ENSG00000171487.14|NLRP5|pc|chr19:56008787:56008853:+	0	+
#Deleted in new
chr19	56015741	56015798	ENSG00000171487.14|NLRP5|pc|chr19:56015741:56015798:+	0	+
#Deleted in new
chr19	56018611	56018746	ENSG00000171487.14|NLRP5|pc|chr19:56018611:56018746:+	0	+
#Deleted in new
chr19	56019284	56019398	ENSG00000171487.14|NLRP5|pc|chr19:56019284:56019398:+	0	+
#Deleted in new
chr19	56019341	56019398	ENSG00000171487.14|NLRP5|pc|chr19:56019341:56019398:+	0	+
#Deleted in new
chr19	56020374	56020423	ENSG00000171487.14|NLRP5|pc|chr19:56020374:56020423:+	0	+
#Deleted in new
chr19	56020374	56020431	ENSG00000171487.14|NLRP5|pc|chr19:56020374:56020431:+	0	+
#Deleted in new
chr19	56066683	56066975	ENSG00000267522.1|LINC01864|lncRNA|chr19:56066683:56066975:+	0	+
#Deleted in new
chr19	56076560	56077075	ENSG00000267522.1|LINC01864|lncRNA|chr19:56076560:56077075:+	0	+
#Deleted in new
chr19	56077178	56077342	ENSG00000267522.1|LINC01864|lncRNA|chr19:56077178:56077342:+	0	+
#Deleted in new
chr19	56078111	56078801	ENSG00000267522.1|LINC01864|lncRNA|chr19:56078111:56078801:+	0	+
#Deleted in new
chr19	5610288	5610611	ENSG00000130254.11|SAFB2|pc|chr19:5610288:5610611:-	0	-
#Deleted in new
chr19	56127235	56127466	ENSG00000279959.1|AC024580.2|lncRNA|chr19:56127235:56127466:-	0	-
#Deleted in new
chr19	56132598	56132778	ENSG00000167685.14|ZNF444|pc|chr19:56132598:56132778:+	0	+
#Deleted in new
chr19	56142275	56142386	ENSG00000167685.14|ZNF444|pc|chr19:56142275:56142386:+	0	+
#Deleted in new
chr19	56143336	56143591	ENSG00000167685.14|ZNF444|pc|chr19:56143336:56143591:+	0	+
#Deleted in new
chr19	56146087	56146420	ENSG00000167685.14|ZNF444|pc|chr19:56146087:56146420:+	0	+
#Deleted in new
chr19	56146246	56146420	ENSG00000167685.14|ZNF444|pc|chr19:56146246:56146420:+	0	+
#Deleted in new
chr19	56149816	56150490	ENSG00000279794.1|AC024580.1|lncRNA|chr19:56149816:56150490:+	0	+
#Partially deleted in new
chr19	56154300	56158602	ENSG00000167685.14|ZNF444|pc|chr19:56154300:56158602:+	0	+
#Deleted in new
chr19	56155760	56155800	ENSG00000167685.14|ZNF444|pc|chr19:56155760:56155800:+	0	+
#Deleted in new
chr19	56157308	56157546	ENSG00000167685.14|ZNF444|pc|chr19:56157308:56157546:+	0	+
#Deleted in new
chr19	56176019	56176062	ENSG00000197487.8|GALP|pc|chr19:56176019:56176062:+	0	+
#Deleted in new
chr19	56190836	56190987	ENSG00000197213.9|ZSCAN5B|pc|chr19:56190836:56190987:-	0	-
#Deleted in new
chr19	56197733	56197793	ENSG00000197213.9|ZSCAN5B|pc|chr19:56197733:56197793:-	0	-
#Deleted in new
chr19	56197733	56197815	ENSG00000197213.9|ZSCAN5B|pc|chr19:56197733:56197815:-	0	-
#Deleted in new
chr19	56197733	56197920	ENSG00000197213.9|ZSCAN5B|pc|chr19:56197733:56197920:-	0	-
#Deleted in new
chr19	56202300	56202322	ENSG00000204532.6|ZSCAN5C|pc|chr19:56202300:56202322:+	0	+
#Deleted in new
chr19	56208033	56208184	ENSG00000204532.6|ZSCAN5C|pc|chr19:56208033:56208184:+	0	+
#Partially deleted in new
chr19	56219669	56222326	ENSG00000131848.9|ZSCAN5A|pc|chr19:56219669:56222326:-	0	-
#Deleted in new
chr19	56222590	56222741	ENSG00000131848.9|ZSCAN5A|pc|chr19:56222590:56222741:-	0	-
#Deleted in new
chr19	56228251	56228290	ENSG00000131848.9|ZSCAN5A|pc|chr19:56228251:56228290:-	0	-
#Deleted in new
chr19	56228251	56228311	ENSG00000131848.9|ZSCAN5A|pc|chr19:56228251:56228311:-	0	-
#Deleted in new
chr19	5623950	5624046	ENSG00000130254.11|SAFB2|pc|chr19:5623950:5624046:-	0	-
#Deleted in new
chr19	56263217	56263682	ENSG00000131848.9|ZSCAN5A|pc|chr19:56263217:56263682:-	0	-
#Deleted in new
chr19	56266217	56266761	ENSG00000131848.9|ZSCAN5A|pc|chr19:56266217:56266761:-	0	-
#Deleted in new
chr19	56274503	56274908	ENSG00000131848.9|ZSCAN5A|pc|chr19:56274503:56274908:-	0	-
#Deleted in new
chr19	56274538	56274908	ENSG00000131848.9|ZSCAN5A|pc|chr19:56274538:56274908:-	0	-
#Deleted in new
chr19	56280601	56280700	ENSG00000131848.9|ZSCAN5A|pc|chr19:56280601:56280700:-	0	-
#Deleted in new
chr19	56282994	56283020	ENSG00000267710.6|EDDM13|pc|chr19:56282994:56283020:+	0	+
#Deleted in new
chr19	56283344	56283887	ENSG00000131848.9|ZSCAN5A|pc|chr19:56283344:56283887:-	0	-
#Deleted in new
chr19	56286381	56286680	ENSG00000267710.6|EDDM13|pc|chr19:56286381:56286680:+	0	+
#Deleted in new
chr19	56295066	56295153	ENSG00000267710.6|EDDM13|pc|chr19:56295066:56295153:+	0	+
#Deleted in new
chr19	56298090	56298225	ENSG00000267710.6|EDDM13|pc|chr19:56298090:56298225:+	0	+
#Deleted in new
chr19	56299829	56299975	ENSG00000267710.6|EDDM13|pc|chr19:56299829:56299975:+	0	+
#Deleted in new
chr19	56302841	56302983	ENSG00000267710.6|EDDM13|pc|chr19:56302841:56302983:+	0	+
#Deleted in new
chr19	56311927	56312486	ENSG00000267298.1|AC006116.5|lncRNA|chr19:56311927:56312486:-	0	-
#Deleted in new
chr19	56313282	56313380	ENSG00000131848.9|ZSCAN5A|pc|chr19:56313282:56313380:-	0	-
#Deleted in new
chr19	56313282	56313384	ENSG00000131848.9|ZSCAN5A|pc|chr19:56313282:56313384:-	0	-
#Deleted in new
chr19	56313282	56313387	ENSG00000131848.9|ZSCAN5A|pc|chr19:56313282:56313387:-	0	-
#Partially deleted in new
chr19	56314249	56314828	ENSG00000131848.9|ZSCAN5A|pc|chr19:56314249:56314828:-	0	-
#Partially deleted in new
chr19	56314420	56314513	ENSG00000131848.9|ZSCAN5A|pc|chr19:56314420:56314513:-	0	-
#Deleted in new
chr19	56314619	56314788	ENSG00000131848.9|ZSCAN5A|pc|chr19:56314619:56314788:-	0	-
#Deleted in new
chr19	56314619	56314833	ENSG00000131848.9|ZSCAN5A|pc|chr19:56314619:56314833:-	0	-
#Deleted in new
chr19	56314619	56314839	ENSG00000131848.9|ZSCAN5A|pc|chr19:56314619:56314839:-	0	-
#Deleted in new
chr19	56314680	56314793	ENSG00000131848.9|ZSCAN5A|pc|chr19:56314680:56314793:-	0	-
#Deleted in new
chr19	56314680	56314839	ENSG00000131848.9|ZSCAN5A|pc|chr19:56314680:56314839:-	0	-
#Deleted in new
chr19	56314680	56314842	ENSG00000131848.9|ZSCAN5A|pc|chr19:56314680:56314842:-	0	-
#Deleted in new
chr19	56314680	56314859	ENSG00000131848.9|ZSCAN5A|pc|chr19:56314680:56314859:-	0	-
#Deleted in new
chr19	56314680	56314925	ENSG00000131848.9|ZSCAN5A|pc|chr19:56314680:56314925:-	0	-
#Deleted in new
chr19	56314702	56314986	ENSG00000267549.5|AC006116.8|lncRNA|chr19:56314702:56314986:+	0	+
#Deleted in new
chr19	56315253	56316803	ENSG00000267549.5|AC006116.8|lncRNA|chr19:56315253:56316803:+	0	+
#Deleted in new
chr19	56315598	56315642	ENSG00000267549.5|AC006116.8|lncRNA|chr19:56315598:56315642:+	0	+
#Deleted in new
chr19	56315913	56316268	ENSG00000131848.9|ZSCAN5A|pc|chr19:56315913:56316268:-	0	-
#Deleted in new
chr19	56340785	56341005	ENSG00000267549.5|AC006116.8|lncRNA|chr19:56340785:56341005:+	0	+
#Deleted in new
chr19	56340785	56341287	ENSG00000267549.5|AC006116.8|lncRNA|chr19:56340785:56341287:+	0	+
#Deleted in new
chr19	56347080	56348183	ENSG00000267429.1|AC006116.6|lncRNA|chr19:56347080:56348183:-	0	-
#Deleted in new
chr19	56363175	56363398	ENSG00000267606.1|AC006116.9|lncRNA|chr19:56363175:56363398:-	0	-
#Deleted in new
chr19	56363234	56363398	ENSG00000131848.9|ZSCAN5A|pc|chr19:56363234:56363398:-	0	-
#Deleted in new
chr19	56363234	56363398	ENSG00000267606.1|AC006116.9|lncRNA|chr19:56363234:56363398:-	0	-
#Deleted in new
chr19	56364955	56364997	ENSG00000267606.1|AC006116.9|lncRNA|chr19:56364955:56364997:-	0	-
#Deleted in new
chr19	56364955	56365057	ENSG00000267606.1|AC006116.9|lncRNA|chr19:56364955:56365057:-	0	-
#Deleted in new
chr19	56365714	56365949	ENSG00000267606.1|AC006116.9|lncRNA|chr19:56365714:56365949:-	0	-
#Deleted in new
chr19	56365715	56365949	ENSG00000267606.1|AC006116.9|lncRNA|chr19:56365715:56365949:-	0	-
#Deleted in new
chr19	56367228	56367360	ENSG00000267606.1|AC006116.9|lncRNA|chr19:56367228:56367360:-	0	-
#Deleted in new
chr19	56367854	56368053	ENSG00000267606.1|AC006116.9|lncRNA|chr19:56367854:56368053:-	0	-
#Deleted in new
chr19	56368208	56368383	ENSG00000131848.9|ZSCAN5A|pc|chr19:56368208:56368383:-	0	-
#Deleted in new
chr19	56375845	56376121	ENSG00000018869.16|ZNF582|pc|chr19:56375845:56376121:-	0	-
#Deleted in new
chr19	56388259	56388424	ENSG00000267192.1|AC006116.4|lncRNA|chr19:56388259:56388424:+	0	+
#Partially deleted in new
chr19	56393717	56394441	ENSG00000267454.5|ZNF582-AS1|lncRNA|chr19:56393717:56394441:+	0	+
#Deleted in new
chr19	56394216	56394433	ENSG00000267454.5|ZNF582-AS1|lncRNA|chr19:56394216:56394433:+	0	+
#Deleted in new
chr19	56394216	56394441	ENSG00000267454.5|ZNF582-AS1|lncRNA|chr19:56394216:56394441:+	0	+
#Deleted in new
chr19	56397880	56398048	ENSG00000267454.5|ZNF582-AS1|lncRNA|chr19:56397880:56398048:+	0	+
#Deleted in new
chr19	56397880	56398152	ENSG00000267454.5|ZNF582-AS1|lncRNA|chr19:56397880:56398152:+	0	+
#Deleted in new
chr19	56397880	56399172	ENSG00000267454.5|ZNF582-AS1|lncRNA|chr19:56397880:56399172:+	0	+
#Deleted in new
chr19	56397965	56398048	ENSG00000198440.9|ZNF583|pc|chr19:56397965:56398048:+	0	+
#Deleted in new
chr19	56398276	56398383	ENSG00000198440.9|ZNF583|pc|chr19:56398276:56398383:+	0	+
#Deleted in new
chr19	56398276	56398383	ENSG00000267454.5|ZNF582-AS1|lncRNA|chr19:56398276:56398383:+	0	+
#Deleted in new
chr19	56398276	56399168	ENSG00000267454.5|ZNF582-AS1|lncRNA|chr19:56398276:56399168:+	0	+
#Deleted in new
chr19	56398893	56399168	ENSG00000267454.5|ZNF582-AS1|lncRNA|chr19:56398893:56399168:+	0	+
#Deleted in new
chr19	56404013	56404089	ENSG00000198440.9|ZNF583|pc|chr19:56404013:56404089:+	0	+
#Duplicated in new
chr19	56414344	56414800	ENSG00000198440.9|ZNF583|pc|chr19:56414344:56414800:+	0	+
#Deleted in new
chr19	56433778	56436035	ENSG00000198440.9|ZNF583|pc|chr19:56433778:56436035:+	0	+
#Deleted in new
chr19	56444130	56444281	ENSG00000198046.11|ZNF667|pc|chr19:56444130:56444281:-	0	-
#Deleted in new
chr19	56449556	56449657	ENSG00000198046.11|ZNF667|pc|chr19:56449556:56449657:-	0	-
#Deleted in new
chr19	56467718	56468935	ENSG00000198046.11|ZNF667|pc|chr19:56467718:56468935:-	0	-
#Deleted in new
chr19	56471698	56472184	ENSG00000198046.11|ZNF667|pc|chr19:56471698:56472184:-	0	-
#Deleted in new
chr19	56471698	56472187	ENSG00000198046.11|ZNF667|pc|chr19:56471698:56472187:-	0	-
#Deleted in new
chr19	56471698	56473068	ENSG00000198046.11|ZNF667|pc|chr19:56471698:56473068:-	0	-
#Deleted in new
chr19	56474011	56474124	ENSG00000198046.11|ZNF667|pc|chr19:56474011:56474124:-	0	-
#Deleted in new
chr19	56474011	56475901	ENSG00000198046.11|ZNF667|pc|chr19:56474011:56475901:-	0	-
#Deleted in new
chr19	56476908	56477118	ENSG00000198046.11|ZNF667|pc|chr19:56476908:56477118:-	0	-
#Deleted in new
chr19	56477249	56478687	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56477249:56478687:+	0	+
#Deleted in new
chr19	56477271	56477330	ENSG00000198046.11|ZNF667|pc|chr19:56477271:56477330:-	0	-
#Deleted in new
chr19	56477271	56477367	ENSG00000198046.11|ZNF667|pc|chr19:56477271:56477367:-	0	-
#Deleted in new
chr19	56477271	56477374	ENSG00000198046.11|ZNF667|pc|chr19:56477271:56477374:-	0	-
#Deleted in new
chr19	56477602	56477925	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56477602:56477925:+	0	+
#Deleted in new
chr19	56478032	56478065	ENSG00000198046.11|ZNF667|pc|chr19:56478032:56478065:-	0	-
#Deleted in new
chr19	56478130	56478381	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56478130:56478381:+	0	+
#Deleted in new
chr19	56478154	56478381	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56478154:56478381:+	0	+
#Deleted in new
chr19	56478156	56478276	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56478156:56478276:+	0	+
#Deleted in new
chr19	56478182	56478276	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56478182:56478276:+	0	+
#Deleted in new
chr19	56478182	56478381	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56478182:56478381:+	0	+
#Deleted in new
chr19	56478189	56478377	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56478189:56478377:+	0	+
#Deleted in new
chr19	56478239	56478293	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56478239:56478293:+	0	+
#Deleted in new
chr19	56480396	56480545	ENSG00000279405.1|AC004696.2|lncRNA|chr19:56480396:56480545:-	0	-
#Deleted in new
chr19	56483795	56483977	ENSG00000279405.1|AC004696.2|lncRNA|chr19:56483795:56483977:-	0	-
#Deleted in new
chr19	56491576	56491766	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56491576:56491766:+	0	+
#Partially deleted in new
chr19	56494162	56495432	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56494162:56495432:+	0	+
#Deleted in new
chr19	56495047	56495318	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56495047:56495318:+	0	+
#Deleted in new
chr19	56495047	56495441	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56495047:56495441:+	0	+
#Deleted in new
chr19	56497300	56497449	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56497300:56497449:+	0	+
#Deleted in new
chr19	56500093	56500666	ENSG00000166770.10|ZNF667-AS1|lncRNA|chr19:56500093:56500666:+	0	+
#Deleted in new
chr19	56507842	56507920	ENSG00000196263.7|ZNF471|pc|chr19:56507842:56507920:+	0	+
#Deleted in new
chr19	56507849	56507920	ENSG00000196263.7|ZNF471|pc|chr19:56507849:56507920:+	0	+
#Partially deleted in new
chr19	56510096	56510313	ENSG00000196263.7|ZNF471|pc|chr19:56510096:56510313:+	0	+
#Split in new
chr19	56524323	56530221	ENSG00000196263.7|ZNF471|pc|chr19:56524323:56530221:+	0	+
#Split in new
chr19	56524744	56530221	ENSG00000196263.7|ZNF471|pc|chr19:56524744:56530221:+	0	+
#Deleted in new
chr19	56535298	56535763	ENSG00000267224.1|AC005498.1|lncRNA|chr19:56535298:56535763:+	0	+
#Deleted in new
chr19	56536155	56536332	ENSG00000267421.6|AC005498.2|lncRNA|chr19:56536155:56536332:-	0	-
#Deleted in new
chr19	56536157	56536332	ENSG00000267421.6|AC005498.2|lncRNA|chr19:56536157:56536332:-	0	-
#Partially deleted in new
chr19	56537647	56538431	ENSG00000267421.6|AC005498.2|lncRNA|chr19:56537647:56538431:-	0	-
#Deleted in new
chr19	56537650	56537737	ENSG00000267421.6|AC005498.2|lncRNA|chr19:56537650:56537737:-	0	-
#Deleted in new
chr19	56538247	56538315	ENSG00000267421.6|AC005498.2|lncRNA|chr19:56538247:56538315:-	0	-
#Deleted in new
chr19	56538252	56538375	ENSG00000267421.6|AC005498.2|lncRNA|chr19:56538252:56538375:-	0	-
#Partially deleted in new
chr19	56538356	56538418	ENSG00000267421.6|AC005498.2|lncRNA|chr19:56538356:56538418:-	0	-
#Deleted in new
chr19	56544535	56544737	ENSG00000196867.7|ZFP28|pc|chr19:56544535:56544737:+	0	+
#Partially deleted in new
chr19	56545565	56547271	ENSG00000269696.1|AC005498.3|lncRNA|chr19:56545565:56547271:-	0	-
#Deleted in new
chr19	56548377	56548478	ENSG00000196867.7|ZFP28|pc|chr19:56548377:56548478:+	0	+
#Partially deleted in new
chr19	56550509	56553116	ENSG00000196867.7|ZFP28|pc|chr19:56550509:56553116:+	0	+
#Deleted in new
chr19	56567072	56567411	ENSG00000269696.1|AC005498.3|lncRNA|chr19:56567072:56567411:-	0	-
#Deleted in new
chr19	56567510	56568038	ENSG00000197016.11|ZNF470|pc|chr19:56567510:56568038:+	0	+
#Deleted in new
chr19	56567525	56568038	ENSG00000197016.11|ZNF470|pc|chr19:56567525:56568038:+	0	+
#Deleted in new
chr19	56567648	56568038	ENSG00000197016.11|ZNF470|pc|chr19:56567648:56568038:+	0	+
#Deleted in new
chr19	56568757	56568883	ENSG00000197016.11|ZNF470|pc|chr19:56568757:56568883:+	0	+
#Split in new
chr19	56576712	56582893	ENSG00000197016.11|ZNF470|pc|chr19:56576712:56582893:+	0	+
#Split in new
chr19	56576712	56582894	ENSG00000197016.11|ZNF470|pc|chr19:56576712:56582894:+	0	+
#Deleted in new
chr19	56582549	56582895	ENSG00000197016.11|ZNF470|pc|chr19:56582549:56582895:+	0	+
#Deleted in new
chr19	56584019	56584112	ENSG00000197016.11|ZNF470|pc|chr19:56584019:56584112:+	0	+
#Deleted in new
chr19	56586634	56588908	ENSG00000197016.11|ZNF470|pc|chr19:56586634:56588908:+	0	+
#Deleted in new
chr19	56588225	56588406	ENSG00000197016.11|ZNF470|pc|chr19:56588225:56588406:+	0	+
#Deleted in new
chr19	56588225	56588911	ENSG00000197016.11|ZNF470|pc|chr19:56588225:56588911:+	0	+
#Deleted in new
chr19	56595263	56595428	ENSG00000197951.8|ZNF71|pc|chr19:56595263:56595428:+	0	+
#Deleted in new
chr19	56595299	56595428	ENSG00000197951.8|ZNF71|pc|chr19:56595299:56595428:+	0	+
#Deleted in new
chr19	56595334	56595428	ENSG00000197951.8|ZNF71|pc|chr19:56595334:56595428:+	0	+
#Deleted in new
chr19	56601506	56601591	ENSG00000197951.8|ZNF71|pc|chr19:56601506:56601591:+	0	+
#Deleted in new
chr19	56609964	56610543	ENSG00000197951.8|ZNF71|pc|chr19:56609964:56610543:+	0	+
#Split in new
chr19	56621267	56621673	ENSG00000197951.8|ZNF71|pc|chr19:56621267:56621673:+	0	+
#Split in new
chr19	56621267	56626481	ENSG00000197951.8|ZNF71|pc|chr19:56621267:56626481:+	0	+
#Partially deleted in new
chr19	5664396	5664762	ENSG00000160633.12|SAFB|pc|chr19:5664396:5664762:+	0	+
#Partially deleted in new
chr19	5664725	5667886	ENSG00000160633.12|SAFB|pc|chr19:5664725:5667886:+	0	+
#Partially deleted in new
chr19	5666655	5667164	ENSG00000160633.12|SAFB|pc|chr19:5666655:5667164:+	0	+
#Deleted in new
chr19	56671575	56671760	ENSG00000127903.13|ZNF835|pc|chr19:56671575:56671760:-	0	-
#Deleted in new
chr19	56671600	56671783	ENSG00000127903.13|ZNF835|pc|chr19:56671600:56671783:-	0	-
#Deleted in new
chr19	56672267	56672431	ENSG00000268352.1|AC006115.1|lncRNA|chr19:56672267:56672431:+	0	+
#Deleted in new
chr19	56684300	56684653	ENSG00000268352.1|AC006115.1|lncRNA|chr19:56684300:56684653:+	0	+
#Deleted in new
chr19	56707292	56707500	ENSG00000284729.1|AC006115.3|lncRNA|chr19:56707292:56707500:+	0	+
#Deleted in new
chr19	56709798	56709856	ENSG00000284729.1|AC006115.3|lncRNA|chr19:56709798:56709856:+	0	+
#Deleted in new
chr19	567209	567624	ENSG00000267751.5|AC009005.1|lncRNA|chr19:567209:567624:-	0	-
#Deleted in new
chr19	567220	567648	ENSG00000267751.5|AC009005.1|lncRNA|chr19:567220:567648:-	0	-
#Deleted in new
chr19	567310	567624	ENSG00000267751.5|AC009005.1|lncRNA|chr19:567310:567624:-	0	-
#Deleted in new
chr19	567432	567624	ENSG00000267751.5|AC009005.1|lncRNA|chr19:567432:567624:-	0	-
#Deleted in new
chr19	5674946	5674972	ENSG00000130255.12|RPL36|pc|chr19:5674946:5674972:+	0	+
#Deleted in new
chr19	56765343	56765414	ENSG00000269793.6|ZIM2-AS1|lncRNA|chr19:56765343:56765414:+	0	+
#Deleted in new
chr19	56765372	56765414	ENSG00000269793.6|ZIM2-AS1|lncRNA|chr19:56765372:56765414:+	0	+
#Deleted in new
chr19	56782399	56782471	ENSG00000269699.5|ZIM2|pc|chr19:56782399:56782471:-	0	-
#Deleted in new
chr19	56797992	56798379	ENSG00000269793.6|ZIM2-AS1|lncRNA|chr19:56797992:56798379:+	0	+
#Deleted in new
chr19	56797992	56799646	ENSG00000269793.6|ZIM2-AS1|lncRNA|chr19:56797992:56799646:+	0	+
#Partially deleted in new
chr19	5681144	5681271	ENSG00000167733.13|HSD11B1L|pc|chr19:5681144:5681271:+	0	+
#Partially deleted in new
chr19	5681158	5681271	ENSG00000167733.13|HSD11B1L|pc|chr19:5681158:5681271:+	0	+
#Partially deleted in new
chr19	5681168	5681271	ENSG00000167733.13|HSD11B1L|pc|chr19:5681168:5681271:+	0	+
#Deleted in new
chr19	5681181	5681271	ENSG00000130255.12|RPL36|pc|chr19:5681181:5681271:+	0	+
#Deleted in new
chr19	56826387	56826463	ENSG00000198300.12|PEG3|pc|chr19:56826387:56826463:-	0	-
#Deleted in new
chr19	56826387	56826463	ENSG00000269699.5|ZIM2|pc|chr19:56826387:56826463:-	0	-
#Deleted in new
chr19	5684021	5684121	ENSG00000167733.13|HSD11B1L|pc|chr19:5684021:5684121:+	0	+
#Deleted in new
chr19	5684032	5684121	ENSG00000167733.13|HSD11B1L|pc|chr19:5684032:5684121:+	0	+
#Deleted in new
chr19	5684200	5684350	ENSG00000167733.13|HSD11B1L|pc|chr19:5684200:5684350:+	0	+
#Deleted in new
chr19	5684780	5684905	ENSG00000167733.13|HSD11B1L|pc|chr19:5684780:5684905:+	0	+
#Deleted in new
chr19	56847951	56848556	ENSG00000268654.1|MIMT1|lncRNA|chr19:56847951:56848556:+	0	+
#Deleted in new
chr19	5684818	5684905	ENSG00000167733.13|HSD11B1L|pc|chr19:5684818:5684905:+	0	+
#Deleted in new
chr19	5684818	5685119	ENSG00000167733.13|HSD11B1L|pc|chr19:5684818:5685119:+	0	+
#Deleted in new
chr19	5684854	5684905	ENSG00000167733.13|HSD11B1L|pc|chr19:5684854:5684905:+	0	+
#Deleted in new
chr19	5684964	5685119	ENSG00000130255.12|RPL36|pc|chr19:5684964:5685119:+	0	+
#Deleted in new
chr19	5684964	5685119	ENSG00000167733.13|HSD11B1L|pc|chr19:5684964:5685119:+	0	+
#Deleted in new
chr19	5684988	5685119	ENSG00000167733.13|HSD11B1L|pc|chr19:5684988:5685119:+	0	+
#Deleted in new
chr19	5684992	5685119	ENSG00000167733.13|HSD11B1L|pc|chr19:5684992:5685119:+	0	+
#Deleted in new
chr19	5685301	5685328	ENSG00000167733.13|HSD11B1L|pc|chr19:5685301:5685328:+	0	+
#Deleted in new
chr19	5685301	5685589	ENSG00000167733.13|HSD11B1L|pc|chr19:5685301:5685589:+	0	+
#Deleted in new
chr19	5686415	5686527	ENSG00000167733.13|HSD11B1L|pc|chr19:5686415:5686527:+	0	+
#Deleted in new
chr19	5686899	5686991	ENSG00000167733.13|HSD11B1L|pc|chr19:5686899:5686991:+	0	+
#Deleted in new
chr19	5687281	5687304	ENSG00000167733.13|HSD11B1L|pc|chr19:5687281:5687304:+	0	+
#Deleted in new
chr19	5687281	5687308	ENSG00000167733.13|HSD11B1L|pc|chr19:5687281:5687308:+	0	+
#Deleted in new
chr19	5687281	5687375	ENSG00000167733.13|HSD11B1L|pc|chr19:5687281:5687375:+	0	+
#Partially deleted in new
chr19	5687502	5688126	ENSG00000167733.13|HSD11B1L|pc|chr19:5687502:5688126:+	0	+
#Deleted in new
chr19	5687752	5687945	ENSG00000167733.13|HSD11B1L|pc|chr19:5687752:5687945:+	0	+
#Deleted in new
chr19	5687752	5687987	ENSG00000167733.13|HSD11B1L|pc|chr19:5687752:5687987:+	0	+
#Deleted in new
chr19	5687752	5688137	ENSG00000167733.13|HSD11B1L|pc|chr19:5687752:5688137:+	0	+
#Deleted in new
chr19	5687752	5688372	ENSG00000167733.13|HSD11B1L|pc|chr19:5687752:5688372:+	0	+
#Deleted in new
chr19	5687752	5688484	ENSG00000167733.13|HSD11B1L|pc|chr19:5687752:5688484:+	0	+
#Deleted in new
chr19	5687752	5688493	ENSG00000167733.13|HSD11B1L|pc|chr19:5687752:5688493:+	0	+
#Deleted in new
chr19	5687752	5688522	ENSG00000167733.13|HSD11B1L|pc|chr19:5687752:5688522:+	0	+
#Deleted in new
chr19	5687752	5688523	ENSG00000167733.13|HSD11B1L|pc|chr19:5687752:5688523:+	0	+
#Deleted in new
chr19	5687915	5688522	ENSG00000167733.13|HSD11B1L|pc|chr19:5687915:5688522:+	0	+
#Partially deleted in new
chr19	5690505	5691390	ENSG00000130255.12|RPL36|pc|chr19:5690505:5691390:+	0	+
#Deleted in new
chr19	5690820	5690931	ENSG00000130255.12|RPL36|pc|chr19:5690820:5690931:+	0	+
#Partially deleted in new
chr19	5708341	5708958	ENSG00000196365.11|LONP1|pc|chr19:5708341:5708958:-	0	-
#Partially deleted in new
chr1	957098	958458	ENSG00000188976.10|NOC2L|pc|chr1:957098:958458:-	0	-
#Deleted in new
chr19	57119137	57119221	ENSG00000131864.10|USP29|pc|chr19:57119137:57119221:+	0	+
#Deleted in new
chr19	57120042	57120229	ENSG00000131864.10|USP29|pc|chr19:57120042:57120229:+	0	+
#Deleted in new
chr19	57120090	57120317	ENSG00000131864.10|USP29|pc|chr19:57120090:57120317:+	0	+
#Deleted in new
chr19	57122324	57122474	ENSG00000131864.10|USP29|pc|chr19:57122324:57122474:+	0	+
#Deleted in new
chr19	57124038	57124139	ENSG00000131864.10|USP29|pc|chr19:57124038:57124139:+	0	+
#Deleted in new
chr19	57124044	57124139	ENSG00000131864.10|USP29|pc|chr19:57124044:57124139:+	0	+
#Deleted in new
chr19	5712462	5712468	ENSG00000196365.11|LONP1|pc|chr19:5712462:5712468:-	0	-
#Deleted in new
chr19	571276	571579	ENSG00000172270.18|BSG|pc|chr19:571276:571579:+	0	+
#Deleted in new
chr19	571309	571579	ENSG00000172270.18|BSG|pc|chr19:571309:571579:+	0	+
#Deleted in new
chr19	571439	571596	ENSG00000267751.5|AC009005.1|lncRNA|chr19:571439:571596:-	0	-
#Deleted in new
chr19	571439	571745	ENSG00000267751.5|AC009005.1|lncRNA|chr19:571439:571745:-	0	-
#Deleted in new
chr19	57144858	57145202	ENSG00000141946.1|ZIM3|pc|chr19:57144858:57145202:-	0	-
#Deleted in new
chr19	5714902	5715040	ENSG00000196365.11|LONP1|pc|chr19:5714902:5715040:-	0	-
#Deleted in new
chr19	57154020	57154482	ENSG00000258873.2|DUXA|pc|chr19:57154020:57154482:-	0	-
#Deleted in new
chr19	57155266	57155372	ENSG00000258873.2|DUXA|pc|chr19:57155266:57155372:-	0	-
#Deleted in new
chr19	57167418	57167443	ENSG00000258873.2|DUXA|pc|chr19:57167418:57167443:-	0	-
#Deleted in new
chr19	571696	571734	ENSG00000267751.5|AC009005.1|lncRNA|chr19:571696:571734:-	0	-
#Deleted in new
chr19	571696	571736	ENSG00000267751.5|AC009005.1|lncRNA|chr19:571696:571736:-	0	-
#Deleted in new
chr19	5717354	5717616	ENSG00000196365.11|LONP1|pc|chr19:5717354:5717616:-	0	-
#Deleted in new
chr19	57191499	57191946	ENSG00000083844.10|ZNF264|pc|chr19:57191499:57191946:+	0	+
#Deleted in new
chr19	57191500	57191527	ENSG00000083844.10|ZNF264|pc|chr19:57191500:57191527:+	0	+
#Deleted in new
chr19	57191500	57191946	ENSG00000083844.10|ZNF264|pc|chr19:57191500:57191946:+	0	+
#Deleted in new
chr19	57191522	57191946	ENSG00000083844.10|ZNF264|pc|chr19:57191522:57191946:+	0	+
#Deleted in new
chr19	57191536	57191946	ENSG00000083844.10|ZNF264|pc|chr19:57191536:57191946:+	0	+
#Deleted in new
chr19	57191698	57191946	ENSG00000083844.10|ZNF264|pc|chr19:57191698:57191946:+	0	+
#Deleted in new
chr19	57191774	57191790	ENSG00000083844.10|ZNF264|pc|chr19:57191774:57191790:+	0	+
#Deleted in new
chr19	57191873	57191946	ENSG00000083844.10|ZNF264|pc|chr19:57191873:57191946:+	0	+
#Deleted in new
chr19	57194768	57194969	ENSG00000083844.10|ZNF264|pc|chr19:57194768:57194969:+	0	+
#Partially deleted in new
chr19	5720218	5720572	ENSG00000196365.11|LONP1|pc|chr19:5720218:5720572:-	0	-
#Deleted in new
chr19	572108	572228	ENSG00000267751.5|AC009005.1|lncRNA|chr19:572108:572228:-	0	-
#Partially deleted in new
chr19	57211353	57222846	ENSG00000083844.10|ZNF264|pc|chr19:57211353:57222846:+	0	+
#Deleted in new
chr19	57230801	57231120	ENSG00000105146.12|AURKC|pc|chr19:57230801:57231120:+	0	+
#Deleted in new
chr19	57231008	57231114	ENSG00000105146.12|AURKC|pc|chr19:57231008:57231114:+	0	+
#Partially deleted in new
chr19	57231062	57231306	ENSG00000105146.12|AURKC|pc|chr19:57231062:57231306:+	0	+
#Deleted in new
chr19	57261353	57262738	ENSG00000268713.1|AC005261.4|lncRNA|chr19:57261353:57262738:+	0	+
#Deleted in new
chr19	57267219	57267712	ENSG00000267871.5|AC005261.1|lncRNA|chr19:57267219:57267712:-	0	-
#Deleted in new
chr19	57267375	57267712	ENSG00000267871.5|AC005261.1|lncRNA|chr19:57267375:57267712:-	0	-
#Deleted in new
chr19	5727267	5727344	ENSG00000174898.15|CATSPERD|pc|chr19:5727267:5727344:+	0	+
#Deleted in new
chr19	57276934	57277056	ENSG00000267871.5|AC005261.1|lncRNA|chr19:57276934:57277056:-	0	-
#Deleted in new
chr19	57278115	57278182	ENSG00000267871.5|AC005261.1|lncRNA|chr19:57278115:57278182:-	0	-
#Deleted in new
chr19	57280050	57280124	ENSG00000197714.8|ZNF460|pc|chr19:57280050:57280124:+	0	+
#Deleted in new
chr19	57280278	57280308	ENSG00000267871.5|AC005261.1|lncRNA|chr19:57280278:57280308:-	0	-
#Deleted in new
chr19	57280278	57280334	ENSG00000267871.5|AC005261.1|lncRNA|chr19:57280278:57280334:-	0	-
#Deleted in new
chr19	57280484	57280836	ENSG00000197714.8|ZNF460|pc|chr19:57280484:57280836:+	0	+
#Deleted in new
chr19	57281886	57281967	ENSG00000197714.8|ZNF460|pc|chr19:57281886:57281967:+	0	+
#Partially deleted in new
chr19	57290698	57291045	ENSG00000197714.8|ZNF460|pc|chr19:57290698:57291045:+	0	+
#Deleted in new
chr19	57293082	57294469	ENSG00000279541.1|AC005261.6|lncRNA|chr19:57293082:57294469:-	0	-
#Partially deleted in new
chr19	57304304	57308562	ENSG00000268205.1|AC005261.2|lncRNA|chr19:57304304:57308562:+	0	+
#Deleted in new
chr19	57320508	57320871	ENSG00000178229.7|ZNF543|pc|chr19:57320508:57320871:+	0	+
#Deleted in new
chr19	5733855	5733970	ENSG00000174898.15|CATSPERD|pc|chr19:5733855:5733970:+	0	+
#Deleted in new
chr19	57351306	57351417	ENSG00000131845.14|ZNF304|pc|chr19:57351306:57351417:+	0	+
#Deleted in new
chr19	57351325	57351697	ENSG00000131845.14|ZNF304|pc|chr19:57351325:57351697:+	0	+
#Deleted in new
chr19	57351479	57352012	ENSG00000268678.1|AC005261.3|lncRNA|chr19:57351479:57352012:-	0	-
#Deleted in new
chr19	57351491	57351697	ENSG00000131845.14|ZNF304|pc|chr19:57351491:57351697:+	0	+
#Deleted in new
chr19	57352654	57352735	ENSG00000131845.14|ZNF304|pc|chr19:57352654:57352735:+	0	+
#Deleted in new
chr19	57355270	57355411	ENSG00000131845.14|ZNF304|pc|chr19:57355270:57355411:+	0	+
#Deleted in new
chr19	57363476	57363703	ENSG00000152433.14|ZNF547|pc|chr19:57363476:57363703:+	0	+
#Deleted in new
chr19	57363510	57363703	ENSG00000256060.2|AC003002.1|pc|chr19:57363510:57363703:+	0	+
#Deleted in new
chr19	57363565	57363703	ENSG00000152433.14|ZNF547|pc|chr19:57363565:57363703:+	0	+
#Deleted in new
chr19	57363565	57363703	ENSG00000268133.1|AC003002.2|pc|chr19:57363565:57363703:+	0	+
#Split in new
chr19	57363566	57365309	ENSG00000256060.2|AC003002.1|pc|chr19:57363566:57365309:+	0	+
#Deleted in new
chr19	57370972	57371094	ENSG00000152433.14|ZNF547|pc|chr19:57370972:57371094:+	0	+
#Deleted in new
chr19	57389849	57390114	ENSG00000188785.11|ZNF548|pc|chr19:57389849:57390114:+	0	+
#Deleted in new
chr19	57389874	57390114	ENSG00000188785.11|ZNF548|pc|chr19:57389874:57390114:+	0	+
#Deleted in new
chr19	57389883	57390114	ENSG00000188785.11|ZNF548|pc|chr19:57389883:57390114:+	0	+
#Deleted in new
chr19	57389883	57390114	ENSG00000269533.5|AC003002.4|pc|chr19:57389883:57390114:+	0	+
#Deleted in new
chr19	57389896	57390114	ENSG00000188785.11|ZNF548|pc|chr19:57389896:57390114:+	0	+
#Deleted in new
chr19	57389964	57390114	ENSG00000188785.11|ZNF548|pc|chr19:57389964:57390114:+	0	+
#Deleted in new
chr19	57389986	57390114	ENSG00000269533.5|AC003002.4|pc|chr19:57389986:57390114:+	0	+
#Deleted in new
chr19	57390004	57390114	ENSG00000188785.11|ZNF548|pc|chr19:57390004:57390114:+	0	+
#Deleted in new
chr19	57390007	57390114	ENSG00000269533.5|AC003002.4|pc|chr19:57390007:57390114:+	0	+
#Deleted in new
chr19	57390282	57390416	ENSG00000188785.11|ZNF548|pc|chr19:57390282:57390416:+	0	+
#Deleted in new
chr19	57390452	57390845	ENSG00000188785.11|ZNF548|pc|chr19:57390452:57390845:+	0	+
#Deleted in new
chr19	57390721	57390845	ENSG00000188785.11|ZNF548|pc|chr19:57390721:57390845:+	0	+
#Deleted in new
chr19	57390745	57390845	ENSG00000188785.11|ZNF548|pc|chr19:57390745:57390845:+	0	+
#Deleted in new
chr19	57392787	57392948	ENSG00000188785.11|ZNF548|pc|chr19:57392787:57392948:+	0	+
#Deleted in new
chr19	57392800	57392948	ENSG00000188785.11|ZNF548|pc|chr19:57392800:57392948:+	0	+
#Deleted in new
chr19	57394042	57394223	ENSG00000188785.11|ZNF548|pc|chr19:57394042:57394223:+	0	+
#Deleted in new
chr19	57394182	57394223	ENSG00000268533.1|AC003002.3|pc|chr19:57394182:57394223:+	0	+
#Deleted in new
chr19	57394187	57394223	ENSG00000188785.11|ZNF548|pc|chr19:57394187:57394223:+	0	+
#Deleted in new
chr19	57394187	57394223	ENSG00000269533.5|AC003002.4|pc|chr19:57394187:57394223:+	0	+
#Split in new
chr19	57398429	57402992	ENSG00000188785.11|ZNF548|pc|chr19:57398429:57402992:+	0	+
#Deleted in new
chr19	57413372	57413636	ENSG00000186272.12|ZNF17|pc|chr19:57413372:57413636:+	0	+
#Deleted in new
chr19	57413595	57413636	ENSG00000186272.12|ZNF17|pc|chr19:57413595:57413636:+	0	+
#Deleted in new
chr19	57413595	57413636	ENSG00000269533.5|AC003002.4|pc|chr19:57413595:57413636:+	0	+
#Deleted in new
chr19	57428458	57428582	ENSG00000268533.1|AC003002.3|pc|chr19:57428458:57428582:+	0	+
#Deleted in new
chr1	95743095	95743202	ENSG00000271252.1|AL683887.1|lncRNA|chr1:95743095:95743202:+	0	+
#Partially deleted in new
chr19	57435328	57435593	ENSG00000186230.6|ZNF749|pc|chr19:57435328:57435593:+	0	+
#Deleted in new
chr19	57435342	57435593	ENSG00000186230.6|ZNF749|pc|chr19:57435342:57435593:+	0	+
#Deleted in new
chr19	57435346	57435667	ENSG00000186230.6|ZNF749|pc|chr19:57435346:57435667:+	0	+
#Deleted in new
chr19	57435419	57435523	ENSG00000186230.6|ZNF749|pc|chr19:57435419:57435523:+	0	+
#Deleted in new
chr19	57437969	57438092	ENSG00000268163.1|AC004076.1|pc|chr19:57437969:57438092:-	0	-
#Deleted in new
chr19	57438101	57438456	ENSG00000186230.6|ZNF749|pc|chr19:57438101:57438456:+	0	+
#Deleted in new
chr19	57438101	57438457	ENSG00000186230.6|ZNF749|pc|chr19:57438101:57438457:+	0	+
#Deleted in new
chr19	57438101	57438457	ENSG00000268533.1|AC003002.3|pc|chr19:57438101:57438457:+	0	+
#Deleted in new
chr19	57449688	57453011	ENSG00000276449.1|AC004076.2|lncRNA|chr19:57449688:57453011:+	0	+
#Deleted in new
chr19	57466662	57467085	ENSG00000197128.11|ZNF772|pc|chr19:57466662:57467085:-	0	-
#Deleted in new
chr19	57466831	57467085	ENSG00000197128.11|ZNF772|pc|chr19:57466831:57467085:-	0	-
#Deleted in new
chr19	57477648	57478086	ENSG00000268266.1|AC003005.2|lncRNA|chr19:57477648:57478086:+	0	+
#Deleted in new
chr19	57477698	57478086	ENSG00000268266.1|AC003005.2|lncRNA|chr19:57477698:57478086:+	0	+
#Deleted in new
chr19	5748159	5748255	ENSG00000174898.15|CATSPERD|pc|chr19:5748159:5748255:+	0	+
#Deleted in new
chr19	57481880	57482005	ENSG00000268266.1|AC003005.2|lncRNA|chr19:57481880:57482005:+	0	+
#Deleted in new
chr19	57482895	57482996	ENSG00000268266.1|AC003005.2|lncRNA|chr19:57482895:57482996:+	0	+
#Duplicated in new
chr19	57492112	57492284	ENSG00000105136.20|ZNF419|pc|chr19:57492112:57492284:+	0	+
#Duplicated in new
chr19	57492112	57492476	ENSG00000105136.20|ZNF419|pc|chr19:57492112:57492476:+	0	+
#Deleted in new
chr19	57499914	57500113	ENSG00000152439.12|ZNF773|pc|chr19:57499914:57500113:+	0	+
#Deleted in new
chr19	57499934	57500113	ENSG00000152439.12|ZNF773|pc|chr19:57499934:57500113:+	0	+
#Deleted in new
chr19	57499938	57500113	ENSG00000152439.12|ZNF773|pc|chr19:57499938:57500113:+	0	+
#Deleted in new
chr19	57499940	57500113	ENSG00000152439.12|ZNF773|pc|chr19:57499940:57500113:+	0	+
#Deleted in new
chr19	57499956	57500113	ENSG00000152439.12|ZNF773|pc|chr19:57499956:57500113:+	0	+
#Deleted in new
chr19	575046	575140	ENSG00000172270.18|BSG|pc|chr19:575046:575140:+	0	+
#Deleted in new
chr19	575048	575140	ENSG00000172270.18|BSG|pc|chr19:575048:575140:+	0	+
#Deleted in new
chr19	57508519	57508564	ENSG00000152439.12|ZNF773|pc|chr19:57508519:57508564:+	0	+
#Deleted in new
chr19	57513021	57513144	ENSG00000152439.12|ZNF773|pc|chr19:57513021:57513144:+	0	+
#Deleted in new
chr19	57513021	57513151	ENSG00000152439.12|ZNF773|pc|chr19:57513021:57513151:+	0	+
#Deleted in new
chr19	57513021	57518404	ENSG00000152439.12|ZNF773|pc|chr19:57513021:57518404:+	0	+
#Deleted in new
chr19	57516053	57516421	ENSG00000152439.12|ZNF773|pc|chr19:57516053:57516421:+	0	+
#Deleted in new
chr19	575212	575386	ENSG00000172270.18|BSG|pc|chr19:575212:575386:+	0	+
#Deleted in new
chr19	57527324	57527606	ENSG00000121406.8|ZNF549|pc|chr19:57527324:57527606:+	0	+
#Deleted in new
chr19	57527392	57527606	ENSG00000121406.8|ZNF549|pc|chr19:57527392:57527606:+	0	+
#Deleted in new
chr19	57527420	57527606	ENSG00000121406.8|ZNF549|pc|chr19:57527420:57527606:+	0	+
#Deleted in new
chr19	57527425	57527606	ENSG00000121406.8|ZNF549|pc|chr19:57527425:57527606:+	0	+
#Deleted in new
chr19	57531069	57531108	ENSG00000121406.8|ZNF549|pc|chr19:57531069:57531108:+	0	+
#Deleted in new
chr19	5753510	5753687	ENSG00000174898.15|CATSPERD|pc|chr19:5753510:5753687:+	0	+
#Deleted in new
chr19	57541835	57543243	ENSG00000251369.8|ZNF550|pc|chr19:57541835:57543243:-	0	-
#Deleted in new
chr19	57541839	57543243	ENSG00000251369.8|ZNF550|pc|chr19:57541839:57543243:-	0	-
#Deleted in new
chr19	57542635	57544583	ENSG00000251369.8|ZNF550|pc|chr19:57542635:57544583:-	0	-
#Deleted in new
chr19	57543650	57544583	ENSG00000251369.8|ZNF550|pc|chr19:57543650:57544583:-	0	-
#Deleted in new
chr19	57544236	57544583	ENSG00000251369.8|ZNF550|pc|chr19:57544236:57544583:-	0	-
#Partially deleted in new
chr19	57552384	57552754	ENSG00000121406.8|ZNF549|pc|chr19:57552384:57552754:+	0	+
#Split in new
chr19	57552384	57557542	ENSG00000121406.8|ZNF549|pc|chr19:57552384:57557542:+	0	+
#Deleted in new
chr19	57552626	57552722	ENSG00000251369.8|ZNF550|pc|chr19:57552626:57552722:-	0	-
#Duplicated in new
chr19	57555997	57556357	ENSG00000251369.8|ZNF550|pc|chr19:57555997:57556357:-	0	-
#Deleted in new
chr19	57559655	57559812	ENSG00000251369.8|ZNF550|pc|chr19:57559655:57559812:-	0	-
#Deleted in new
chr19	57559655	57559860	ENSG00000251369.8|ZNF550|pc|chr19:57559655:57559860:-	0	-
#Deleted in new
chr19	57559655	57559863	ENSG00000251369.8|ZNF550|pc|chr19:57559655:57559863:-	0	-
#Partially deleted in new
chr19	57583609	57583975	ENSG00000171649.11|ZIK1|pc|chr19:57583609:57583975:+	0	+
#Deleted in new
chr1	95759290	95759470	ENSG00000271252.1|AL683887.1|lncRNA|chr1:95759290:95759470:+	0	+
#Deleted in new
chr19	57599884	57600134	ENSG00000183647.10|ZNF530|pc|chr19:57599884:57600134:+	0	+
#Deleted in new
chr19	57599902	57600134	ENSG00000183647.10|ZNF530|pc|chr19:57599902:57600134:+	0	+
#Deleted in new
chr19	57600727	57600779	ENSG00000183647.10|ZNF530|pc|chr19:57600727:57600779:+	0	+
#Deleted in new
chr19	57612502	57612722	ENSG00000183647.10|ZNF530|pc|chr19:57612502:57612722:+	0	+
#Deleted in new
chr19	57614232	57614503	ENSG00000213762.11|ZNF134|pc|chr19:57614232:57614503:+	0	+
#Deleted in new
chr19	57614237	57614503	ENSG00000213762.11|ZNF134|pc|chr19:57614237:57614503:+	0	+
#Deleted in new
chr19	57614250	57614503	ENSG00000213762.11|ZNF134|pc|chr19:57614250:57614503:+	0	+
#Deleted in new
chr19	57614255	57614503	ENSG00000213762.11|ZNF134|pc|chr19:57614255:57614503:+	0	+
#Duplicated in new
chr19	57618791	57618877	ENSG00000213762.11|ZNF134|pc|chr19:57618791:57618877:+	0	+
#Deleted in new
chr19	57619411	57619508	ENSG00000213762.11|ZNF134|pc|chr19:57619411:57619508:+	0	+
#Partially deleted in new
chr19	57619411	57619628	ENSG00000213762.11|ZNF134|pc|chr19:57619411:57619628:+	0	+
#Split in new
chr19	57620159	57624723	ENSG00000213762.11|ZNF134|pc|chr19:57620159:57624723:+	0	+
#Deleted in new
chr19	57625031	57625236	ENSG00000268392.1|AC003682.1|lncRNA|chr19:57625031:57625236:+	0	+
#Deleted in new
chr19	57626693	57626950	ENSG00000268392.1|AC003682.1|lncRNA|chr19:57626693:57626950:+	0	+
#Deleted in new
chr19	57630394	57630494	ENSG00000121417.13|ZNF211|pc|chr19:57630394:57630494:+	0	+
#Partially deleted in new
chr19	57633166	57633436	ENSG00000121417.13|ZNF211|pc|chr19:57633166:57633436:+	0	+
#Partially deleted in new
chr19	57633167	57633436	ENSG00000121417.13|ZNF211|pc|chr19:57633167:57633436:+	0	+
#Partially deleted in new
chr19	57633180	57633436	ENSG00000121417.13|ZNF211|pc|chr19:57633180:57633436:+	0	+
#Deleted in new
chr19	57633185	57633246	ENSG00000121417.13|ZNF211|pc|chr19:57633185:57633246:+	0	+
#Deleted in new
chr19	57633198	57633246	ENSG00000121417.13|ZNF211|pc|chr19:57633198:57633246:+	0	+
#Partially deleted in new
chr19	57634022	57634283	ENSG00000121417.13|ZNF211|pc|chr19:57634022:57634283:+	0	+
#Deleted in new
chr19	57668934	57669203	ENSG00000180532.10|ZSCAN4|pc|chr19:57668934:57669203:+	0	+
#Deleted in new
chr19	57697366	57697841	ENSG00000179909.15|ZNF154|pc|chr19:57697366:57697841:-	0	-
#Split in new
chr19	57697366	57701145	ENSG00000179909.15|ZNF154|pc|chr19:57697366:57701145:-	0	-
#Deleted in new
chr19	57717166	57717301	ENSG00000204519.10|ZNF551|pc|chr19:57717166:57717301:+	0	+
#Deleted in new
chr19	57726907	57727025	ENSG00000083814.13|ZNF671|pc|chr19:57726907:57727025:-	0	-
#Deleted in new
chr19	57726907	57727613	ENSG00000083814.13|ZNF671|pc|chr19:57726907:57727613:-	0	-
#Deleted in new
chr19	57727390	57727614	ENSG00000083814.13|ZNF671|pc|chr19:57727390:57727614:-	0	-
#Deleted in new
chr19	57727390	57727615	ENSG00000083814.13|ZNF671|pc|chr19:57727390:57727615:-	0	-
#Deleted in new
chr19	57727390	57727622	ENSG00000083814.13|ZNF671|pc|chr19:57727390:57727622:-	0	-
#Deleted in new
chr19	57727390	57727624	ENSG00000083814.13|ZNF671|pc|chr19:57727390:57727624:-	0	-
#Deleted in new
chr19	57749156	57749331	ENSG00000152443.12|ZNF776|pc|chr19:57749156:57749331:+	0	+
#Deleted in new
chr19	5775241	5775289	ENSG00000174898.15|CATSPERD|pc|chr19:5775241:5775289:+	0	+
#Split in new
chr19	57753290	57758159	ENSG00000152443.12|ZNF776|pc|chr19:57753290:57758159:+	0	+
#Duplicated in new
chr19	57754043	57755691	ENSG00000152443.12|ZNF776|pc|chr19:57754043:57755691:+	0	+
#Deleted in new
chr19	57756871	57757194	ENSG00000152443.12|ZNF776|pc|chr19:57756871:57757194:+	0	+
#Deleted in new
chr19	57756871	57757309	ENSG00000152443.12|ZNF776|pc|chr19:57756871:57757309:+	0	+
#Deleted in new
chr19	57769654	57769878	ENSG00000083828.15|ZNF586|pc|chr19:57769654:57769878:+	0	+
#Deleted in new
chr19	57769660	57769878	ENSG00000083828.15|ZNF586|pc|chr19:57769660:57769878:+	0	+
#Deleted in new
chr19	57769666	57769878	ENSG00000083828.15|ZNF586|pc|chr19:57769666:57769878:+	0	+
#Deleted in new
chr19	57769669	57769878	ENSG00000083828.15|ZNF586|pc|chr19:57769669:57769878:+	0	+
#Deleted in new
chr19	57769695	57769878	ENSG00000083828.15|ZNF586|pc|chr19:57769695:57769878:+	0	+
#Deleted in new
chr1	95777146	95777378	ENSG00000228971.2|AL356479.1|lncRNA|chr1:95777146:95777378:+	0	+
#Deleted in new
chr19	57774765	57774815	ENSG00000083828.15|ZNF586|pc|chr19:57774765:57774815:+	0	+
#Deleted in new
chr19	57799235	57799499	ENSG00000083828.15|ZNF586|pc|chr19:57799235:57799499:+	0	+
#Deleted in new
chr19	57803840	57804064	ENSG00000178935.5|ZNF552|pc|chr19:57803840:57804064:-	0	-
#Deleted in new
chr19	57814425	57814658	ENSG00000083828.15|ZNF586|pc|chr19:57814425:57814658:+	0	+
#Deleted in new
chr19	57814532	57814913	ENSG00000178935.5|ZNF552|pc|chr19:57814532:57814913:-	0	-
#Deleted in new
chr19	57814710	57814913	ENSG00000178935.5|ZNF552|pc|chr19:57814710:57814913:-	0	-
#Deleted in new
chr19	57819567	57819939	ENSG00000083828.15|ZNF586|pc|chr19:57819567:57819939:+	0	+
#Deleted in new
chr19	57819718	57819945	ENSG00000268750.6|AC010522.1|pc|chr19:57819718:57819945:+	0	+
#Deleted in new
chr19	57819725	57819945	ENSG00000268750.6|AC010522.1|pc|chr19:57819725:57819945:+	0	+
#Deleted in new
chr19	57819730	57819945	ENSG00000268750.6|AC010522.1|pc|chr19:57819730:57819945:+	0	+
#Deleted in new
chr19	57819740	57819945	ENSG00000269343.6|ZNF587B|pc|chr19:57819740:57819945:+	0	+
#Deleted in new
chr19	57819805	57819945	ENSG00000268750.6|AC010522.1|pc|chr19:57819805:57819945:+	0	+
#Deleted in new
chr19	57820493	57820549	ENSG00000268750.6|AC010522.1|pc|chr19:57820493:57820549:+	0	+
#Deleted in new
chr19	57820493	57820549	ENSG00000269343.6|ZNF587B|pc|chr19:57820493:57820549:+	0	+
#Deleted in new
chr1	95782167	95782342	ENSG00000228971.2|AL356479.1|lncRNA|chr1:95782167:95782342:+	0	+
#Partially deleted in new
chr19	57830294	57830564	ENSG00000269343.6|ZNF587B|pc|chr19:57830294:57830564:+	0	+
#Partially deleted in new
chr19	57830311	57830564	ENSG00000268750.6|AC010522.1|pc|chr19:57830311:57830564:+	0	+
#Deleted in new
chr19	57830312	57830564	ENSG00000269343.6|ZNF587B|pc|chr19:57830312:57830564:+	0	+
#Duplicated in new
chr19	57840837	57841796	ENSG00000269343.6|ZNF587B|pc|chr19:57840837:57841796:+	0	+
#Duplicated in new
chr19	57840837	57842119	ENSG00000269343.6|ZNF587B|pc|chr19:57840837:57842119:+	0	+
#Deleted in new
chr19	57844255	57846238	ENSG00000269343.6|ZNF587B|pc|chr19:57844255:57846238:+	0	+
#Deleted in new
chr19	57848730	57850561	ENSG00000204514.9|ZNF814|pc|chr19:57848730:57850561:-	0	-
#Deleted in new
chr19	57849856	57850071	ENSG00000198466.11|ZNF587|pc|chr19:57849856:57850071:+	0	+
#Deleted in new
chr19	57849859	57850071	ENSG00000198466.11|ZNF587|pc|chr19:57849859:57850071:+	0	+
#Deleted in new
chr19	57850314	57850561	ENSG00000204514.9|ZNF814|pc|chr19:57850314:57850561:-	0	-
#Deleted in new
chr19	57850319	57850561	ENSG00000204514.9|ZNF814|pc|chr19:57850319:57850561:-	0	-
#Deleted in new
chr19	57850678	57852388	ENSG00000204514.9|ZNF814|pc|chr19:57850678:57852388:-	0	-
#Deleted in new
chr19	57852165	57852234	ENSG00000204514.9|ZNF814|pc|chr19:57852165:57852234:-	0	-
#Deleted in new
chr19	57852337	57852388	ENSG00000204514.9|ZNF814|pc|chr19:57852337:57852388:-	0	-
#Deleted in new
chr19	57853775	57854108	ENSG00000198466.11|ZNF587|pc|chr19:57853775:57854108:+	0	+
#Deleted in new
chr19	57857016	57857289	ENSG00000204514.9|ZNF814|pc|chr19:57857016:57857289:-	0	-
#Split in new
chr19	57858575	57864041	ENSG00000198466.11|ZNF587|pc|chr19:57858575:57864041:+	0	+
#Split in new
chr19	57858575	57865112	ENSG00000198466.11|ZNF587|pc|chr19:57858575:57865112:+	0	+
#Deleted in new
chr19	57861284	57861473	ENSG00000198466.11|ZNF587|pc|chr19:57861284:57861473:+	0	+
#Deleted in new
chr19	57861793	57862158	ENSG00000198466.11|ZNF587|pc|chr19:57861793:57862158:+	0	+
#Deleted in new
chr19	57864757	57864923	ENSG00000204514.9|ZNF814|pc|chr19:57864757:57864923:-	0	-
#Deleted in new
chr19	57864758	57864919	ENSG00000204514.9|ZNF814|pc|chr19:57864758:57864919:-	0	-
#Deleted in new
chr19	57864764	57864919	ENSG00000204514.9|ZNF814|pc|chr19:57864764:57864919:-	0	-
#Deleted in new
chr19	57867037	57867394	ENSG00000269867.1|AC010326.3|lncRNA|chr19:57867037:57867394:-	0	-
#Duplicated in new
chr19	57868457	57868579	ENSG00000204514.9|ZNF814|pc|chr19:57868457:57868579:-	0	-
#Duplicated in new
chr19	57868486	57868579	ENSG00000204514.9|ZNF814|pc|chr19:57868486:57868579:-	0	-
#Deleted in new
chr19	57869382	57871659	ENSG00000204514.9|ZNF814|pc|chr19:57869382:57871659:-	0	-
#Deleted in new
chr19	57870721	57870812	ENSG00000204514.9|ZNF814|pc|chr19:57870721:57870812:-	0	-
#Partially deleted in new
chr19	578835	579656	ENSG00000172270.18|BSG|pc|chr19:578835:579656:+	0	+
#Deleted in new
chr19	57885882	57885969	ENSG00000204514.9|ZNF814|pc|chr19:57885882:57885969:-	0	-
#Deleted in new
chr19	57888766	57888780	ENSG00000204514.9|ZNF814|pc|chr19:57888766:57888780:-	0	-
#Deleted in new
chr19	57888766	57888807	ENSG00000204514.9|ZNF814|pc|chr19:57888766:57888807:-	0	-
#Deleted in new
chr19	57888766	57888817	ENSG00000204514.9|ZNF814|pc|chr19:57888766:57888817:-	0	-
#Deleted in new
chr19	57888766	57888821	ENSG00000204514.9|ZNF814|pc|chr19:57888766:57888821:-	0	-
#Deleted in new
chr19	57888766	57888920	ENSG00000204514.9|ZNF814|pc|chr19:57888766:57888920:-	0	-
#Deleted in new
chr19	57888766	57888958	ENSG00000204514.9|ZNF814|pc|chr19:57888766:57888958:-	0	-
#Deleted in new
chr19	57888766	57888969	ENSG00000204514.9|ZNF814|pc|chr19:57888766:57888969:-	0	-
#Deleted in new
chr19	57888766	57889008	ENSG00000269476.1|AC010326.2|pc|chr19:57888766:57889008:-	0	-
#Deleted in new
chr19	57888766	57889019	ENSG00000204514.9|ZNF814|pc|chr19:57888766:57889019:-	0	-
#Deleted in new
chr19	57888766	57889037	ENSG00000204514.9|ZNF814|pc|chr19:57888766:57889037:-	0	-
#Deleted in new
chr19	57888766	57889074	ENSG00000204514.9|ZNF814|pc|chr19:57888766:57889074:-	0	-
#Deleted in new
chr19	57900295	57900514	ENSG00000173480.10|ZNF417|pc|chr19:57900295:57900514:-	0	-
#Deleted in new
chr19	57901656	57901715	ENSG00000173480.10|ZNF417|pc|chr19:57901656:57901715:-	0	-
#Deleted in new
chr19	57901656	57901715	ENSG00000269476.1|AC010326.2|pc|chr19:57901656:57901715:-	0	-
#Partially deleted in new
chr19	57910084	57910114	ENSG00000173480.10|ZNF417|pc|chr19:57910084:57910114:-	0	-
#Deleted in new
chr19	57910103	57910114	ENSG00000173480.10|ZNF417|pc|chr19:57910103:57910114:-	0	-
#Deleted in new
chr19	57915337	57915531	ENSG00000173480.10|ZNF417|pc|chr19:57915337:57915531:-	0	-
#Deleted in new
chr19	57915564	57915665	ENSG00000173480.10|ZNF417|pc|chr19:57915564:57915665:-	0	-
#Deleted in new
chr19	57915564	57915665	ENSG00000269476.1|AC010326.2|pc|chr19:57915564:57915665:-	0	-
#Deleted in new
chr19	57916378	57916576	ENSG00000173480.10|ZNF417|pc|chr19:57916378:57916576:-	0	-
#Deleted in new
chr19	57916378	57916577	ENSG00000173480.10|ZNF417|pc|chr19:57916378:57916577:-	0	-
#Deleted in new
chr19	57916378	57916591	ENSG00000173480.10|ZNF417|pc|chr19:57916378:57916591:-	0	-
#Deleted in new
chr19	57916378	57916591	ENSG00000269476.1|AC010326.2|pc|chr19:57916378:57916591:-	0	-
#Deleted in new
chr19	57916378	57916592	ENSG00000173480.10|ZNF417|pc|chr19:57916378:57916592:-	0	-
#Deleted in new
chr19	57916378	57916609	ENSG00000173480.10|ZNF417|pc|chr19:57916378:57916609:-	0	-
#Deleted in new
chr19	57916378	57916610	ENSG00000173480.10|ZNF417|pc|chr19:57916378:57916610:-	0	-
#Deleted in new
chr19	57921883	57922629	ENSG00000196724.12|ZNF418|pc|chr19:57921883:57922629:-	0	-
#Deleted in new
chr19	57922260	57922629	ENSG00000196724.12|ZNF418|pc|chr19:57922260:57922629:-	0	-
#Deleted in new
chr19	57922265	57922629	ENSG00000196724.12|ZNF418|pc|chr19:57922265:57922629:-	0	-
#Deleted in new
chr19	57922430	57922629	ENSG00000196724.12|ZNF418|pc|chr19:57922430:57922629:-	0	-
#Deleted in new
chr19	57923191	57923289	ENSG00000196724.12|ZNF418|pc|chr19:57923191:57923289:-	0	-
#Deleted in new
chr19	57925622	57925794	ENSG00000196724.12|ZNF418|pc|chr19:57925622:57925794:-	0	-
#Deleted in new
chr19	57932429	57932646	ENSG00000196724.12|ZNF418|pc|chr19:57932429:57932646:-	0	-
#Deleted in new
chr19	57933816	57933902	ENSG00000196724.12|ZNF418|pc|chr19:57933816:57933902:-	0	-
#Deleted in new
chr19	57933816	57933905	ENSG00000196724.12|ZNF418|pc|chr19:57933816:57933905:-	0	-
#Deleted in new
chr19	57933816	57933963	ENSG00000196724.12|ZNF418|pc|chr19:57933816:57933963:-	0	-
#Deleted in new
chr19	57934814	57935135	ENSG00000196724.12|ZNF418|pc|chr19:57934814:57935135:-	0	-
#Deleted in new
chr19	57935030	57935135	ENSG00000196724.12|ZNF418|pc|chr19:57935030:57935135:-	0	-
#Deleted in new
chr19	57935079	57935135	ENSG00000196724.12|ZNF418|pc|chr19:57935079:57935135:-	0	-
#Deleted in new
chr19	57935160	57935176	ENSG00000196724.12|ZNF418|pc|chr19:57935160:57935176:-	0	-
#Deleted in new
chr19	57935160	57935372	ENSG00000196724.12|ZNF418|pc|chr19:57935160:57935372:-	0	-
#Deleted in new
chr19	57935160	57935383	ENSG00000196724.12|ZNF418|pc|chr19:57935160:57935383:-	0	-
#Deleted in new
chr19	57935160	57935387	ENSG00000196724.12|ZNF418|pc|chr19:57935160:57935387:-	0	-
#Deleted in new
chr19	57935283	57935354	ENSG00000196724.12|ZNF418|pc|chr19:57935283:57935354:-	0	-
#Deleted in new
chr19	57935334	57935374	ENSG00000196724.12|ZNF418|pc|chr19:57935334:57935374:-	0	-
#Deleted in new
chr19	57935334	57935380	ENSG00000196724.12|ZNF418|pc|chr19:57935334:57935380:-	0	-
#Deleted in new
chr19	57935334	57935393	ENSG00000196724.12|ZNF418|pc|chr19:57935334:57935393:-	0	-
#Partially deleted in new
chr19	58003210	58003336	ENSG00000176593.7|AC008969.1|lncRNA|chr19:58003210:58003336:+	0	+
#Partially deleted in new
chr19	58003210	58004161	ENSG00000176593.7|AC008969.1|lncRNA|chr19:58003210:58004161:+	0	+
#Deleted in new
chr19	58004382	58004700	ENSG00000176593.7|AC008969.1|lncRNA|chr19:58004382:58004700:+	0	+
#Deleted in new
chr19	58004382	58006409	ENSG00000176593.7|AC008969.1|lncRNA|chr19:58004382:58006409:+	0	+
#Deleted in new
chr19	58005906	58005995	ENSG00000176593.7|AC008969.1|lncRNA|chr19:58005906:58005995:+	0	+
#Deleted in new
chr19	58005906	58007206	ENSG00000176593.7|AC008969.1|lncRNA|chr19:58005906:58007206:+	0	+
#Partially deleted in new
chr19	58005906	58011232	ENSG00000176593.7|AC008969.1|lncRNA|chr19:58005906:58011232:+	0	+
#Deleted in new
chr19	58034031	58034161	ENSG00000152467.9|ZSCAN1|pc|chr19:58034031:58034161:+	0	+
#Deleted in new
chr19	58034065	58034161	ENSG00000152467.9|ZSCAN1|pc|chr19:58034065:58034161:+	0	+
#Deleted in new
chr19	58034105	58034161	ENSG00000152467.9|ZSCAN1|pc|chr19:58034105:58034161:+	0	+
#Deleted in new
chr19	58035969	58036011	ENSG00000152467.9|ZSCAN1|pc|chr19:58035969:58036011:+	0	+
#Deleted in new
chr19	58040449	58040544	ENSG00000152467.9|ZSCAN1|pc|chr19:58040449:58040544:+	0	+
#Deleted in new
chr19	58052489	58052628	ENSG00000152467.9|ZSCAN1|pc|chr19:58052489:58052628:+	0	+
#Deleted in new
chr19	58059733	58060035	ENSG00000176293.19|ZNF135|pc|chr19:58059733:58060035:+	0	+
#Deleted in new
chr19	58059968	58060035	ENSG00000176293.19|ZNF135|pc|chr19:58059968:58060035:+	0	+
#Deleted in new
chr19	58059968	58060398	ENSG00000176293.19|ZNF135|pc|chr19:58059968:58060398:+	0	+
#Deleted in new
chr19	58059973	58060035	ENSG00000176293.19|ZNF135|pc|chr19:58059973:58060035:+	0	+
#Deleted in new
chr19	58081692	58082008	ENSG00000176293.19|ZNF135|pc|chr19:58081692:58082008:+	0	+
#Partially deleted in new
chr19	58087636	58088837	ENSG00000121413.12|ZSCAN18|pc|chr19:58087636:58088837:-	0	-
#Deleted in new
chr19	58092449	58092568	ENSG00000121413.12|ZSCAN18|pc|chr19:58092449:58092568:-	0	-
#Deleted in new
chr19	58108801	58109303	ENSG00000121413.12|ZSCAN18|pc|chr19:58108801:58109303:-	0	-
#Deleted in new
chr19	58118266	58118397	ENSG00000121413.12|ZSCAN18|pc|chr19:58118266:58118397:-	0	-
#Deleted in new
chr19	58118318	58118366	ENSG00000121413.12|ZSCAN18|pc|chr19:58118318:58118366:-	0	-
#Deleted in new
chr19	58118347	58118426	ENSG00000121413.12|ZSCAN18|pc|chr19:58118347:58118426:-	0	-
#Deleted in new
chr19	58118347	58118427	ENSG00000121413.12|ZSCAN18|pc|chr19:58118347:58118427:-	0	-
#Partially deleted in new
chr19	58132241	58132676	ENSG00000181894.14|ZNF329|pc|chr19:58132241:58132676:-	0	-
#Deleted in new
chr19	58142556	58142661	ENSG00000181894.14|ZNF329|pc|chr19:58142556:58142661:-	0	-
#Deleted in new
chr19	58142556	58142664	ENSG00000181894.14|ZNF329|pc|chr19:58142556:58142664:-	0	-
#Deleted in new
chr19	58143104	58143198	ENSG00000181894.14|ZNF329|pc|chr19:58143104:58143198:-	0	-
#Deleted in new
chr19	58150751	58150778	ENSG00000181894.14|ZNF329|pc|chr19:58150751:58150778:-	0	-
#Deleted in new
chr19	58150751	58150787	ENSG00000181894.14|ZNF329|pc|chr19:58150751:58150787:-	0	-
#Deleted in new
chr19	58154734	58155067	ENSG00000181894.14|ZNF329|pc|chr19:58154734:58155067:-	0	-
#Deleted in new
chr19	58154734	58155110	ENSG00000181894.14|ZNF329|pc|chr19:58154734:58155110:-	0	-
#Deleted in new
chr19	58202226	58202468	ENSG00000171606.17|ZNF274|pc|chr19:58202226:58202468:+	0	+
#Deleted in new
chr19	58228593	58228946	ENSG00000198131.13|ZNF544|pc|chr19:58228593:58228946:+	0	+
#Deleted in new
chr19	58228913	58228946	ENSG00000198131.13|ZNF544|pc|chr19:58228913:58228946:+	0	+
#Deleted in new
chr19	58228913	58228946	ENSG00000283515.1|AC020915.6|pc|chr19:58228913:58228946:+	0	+
#Deleted in new
chr19	58228918	58228946	ENSG00000198131.13|ZNF544|pc|chr19:58228918:58228946:+	0	+
#Deleted in new
chr19	58228940	58229256	ENSG00000198131.13|ZNF544|pc|chr19:58228940:58229256:+	0	+
#Deleted in new
chr19	58228974	58229256	ENSG00000198131.13|ZNF544|pc|chr19:58228974:58229256:+	0	+
#Deleted in new
chr19	58229464	58229530	ENSG00000198131.13|ZNF544|pc|chr19:58229464:58229530:+	0	+
#Deleted in new
chr19	58229464	58229570	ENSG00000198131.13|ZNF544|pc|chr19:58229464:58229570:+	0	+
#Deleted in new
chr19	58229464	58229570	ENSG00000283515.1|AC020915.6|pc|chr19:58229464:58229570:+	0	+
#Deleted in new
chr19	58229467	58229570	ENSG00000198131.13|ZNF544|pc|chr19:58229467:58229570:+	0	+
#Deleted in new
chr19	58229467	58229570	ENSG00000283515.1|AC020915.6|pc|chr19:58229467:58229570:+	0	+
#Deleted in new
chr19	58229467	58229986	ENSG00000198131.13|ZNF544|pc|chr19:58229467:58229986:+	0	+
#Deleted in new
chr19	58229470	58229570	ENSG00000198131.13|ZNF544|pc|chr19:58229470:58229570:+	0	+
#Partially deleted in new
chr1	9582298	9585179	ENSG00000171612.6|SLC25A33|pc|chr1:9582298:9585179:+	0	+
#Deleted in new
chr19	58229952	58230072	ENSG00000198131.13|ZNF544|pc|chr19:58229952:58230072:+	0	+
#Deleted in new
chr19	58229952	58230296	ENSG00000198131.13|ZNF544|pc|chr19:58229952:58230296:+	0	+
#Deleted in new
chr19	58230393	58230462	ENSG00000198131.13|ZNF544|pc|chr19:58230393:58230462:+	0	+
#Deleted in new
chr19	58230393	58230462	ENSG00000283515.1|AC020915.6|pc|chr19:58230393:58230462:+	0	+
#Deleted in new
chr19	58230393	58230497	ENSG00000198131.13|ZNF544|pc|chr19:58230393:58230497:+	0	+
#Deleted in new
chr19	58231771	58231820	ENSG00000198131.13|ZNF544|pc|chr19:58231771:58231820:+	0	+
#Deleted in new
chr19	58243961	58244056	ENSG00000198131.13|ZNF544|pc|chr19:58243961:58244056:+	0	+
#Deleted in new
chr19	58243962	58244056	ENSG00000198131.13|ZNF544|pc|chr19:58243962:58244056:+	0	+
#Deleted in new
chr19	58243964	58244056	ENSG00000198131.13|ZNF544|pc|chr19:58243964:58244056:+	0	+
#Deleted in new
chr19	58243964	58244056	ENSG00000283515.1|AC020915.6|pc|chr19:58243964:58244056:+	0	+
#Deleted in new
chr19	58245786	58245869	ENSG00000198131.13|ZNF544|pc|chr19:58245786:58245869:+	0	+
#Partially deleted in new
chr1	958245	959081	ENSG00000188976.10|NOC2L|pc|chr1:958245:959081:-	0	-
#Deleted in new
chr19	58247281	58247328	ENSG00000198131.13|ZNF544|pc|chr19:58247281:58247328:+	0	+
#Deleted in new
chr19	58247281	58247611	ENSG00000198131.13|ZNF544|pc|chr19:58247281:58247611:+	0	+
#Deleted in new
chr19	58251307	58251384	ENSG00000198131.13|ZNF544|pc|chr19:58251307:58251384:+	0	+
#Partially deleted in new
chr19	58257269	58259691	ENSG00000268516.2|AC020915.4|lncRNA|chr19:58257269:58259691:-	0	-
#Deleted in new
chr19	58259277	58259793	ENSG00000198131.13|ZNF544|pc|chr19:58259277:58259793:+	0	+
#Deleted in new
chr19	58260850	58260965	ENSG00000198131.13|ZNF544|pc|chr19:58260850:58260965:+	0	+
#Deleted in new
chr19	58260850	58261252	ENSG00000198131.13|ZNF544|pc|chr19:58260850:58261252:+	0	+
#Deleted in new
chr19	58266634	58267112	ENSG00000268201.1|AC020915.3|lncRNA|chr19:58266634:58267112:+	0	+
#Deleted in new
chr19	58267613	58267685	ENSG00000268201.1|AC020915.3|lncRNA|chr19:58267613:58267685:+	0	+
#Deleted in new
chr19	582749	583430	ENSG00000172270.18|BSG|pc|chr19:582749:583430:+	0	+
#Deleted in new
chr19	582749	583487	ENSG00000172270.18|BSG|pc|chr19:582749:583487:+	0	+
#Deleted in new
chr19	582749	583490	ENSG00000172270.18|BSG|pc|chr19:582749:583490:+	0	+
#Deleted in new
chr19	582749	583492	ENSG00000172270.18|BSG|pc|chr19:582749:583492:+	0	+
#Deleted in new
chr19	582749	583493	ENSG00000172270.18|BSG|pc|chr19:582749:583493:+	0	+
#Deleted in new
chr19	58276322	58276429	ENSG00000198131.13|ZNF544|pc|chr19:58276322:58276429:+	0	+
#Deleted in new
chr19	58277182	58277247	ENSG00000198131.13|ZNF544|pc|chr19:58277182:58277247:+	0	+
#Deleted in new
chr19	58277182	58277495	ENSG00000198131.13|ZNF544|pc|chr19:58277182:58277495:+	0	+
#Deleted in new
chr19	58278522	58278808	ENSG00000268516.2|AC020915.4|lncRNA|chr19:58278522:58278808:-	0	-
#Deleted in new
chr19	58305318	58305445	ENSG00000142396.10|AC020915.1|pc|chr19:58305318:58305445:+	0	+
#Deleted in new
chr19	58305373	58305445	ENSG00000142396.10|AC020915.1|pc|chr19:58305373:58305445:+	0	+
#Deleted in new
chr19	58305374	58305445	ENSG00000142396.10|AC020915.1|pc|chr19:58305374:58305445:+	0	+
#Deleted in new
chr19	58305376	58305445	ENSG00000142396.10|AC020915.1|pc|chr19:58305376:58305445:+	0	+
#Deleted in new
chr19	58306087	58306216	ENSG00000142396.10|AC020915.1|pc|chr19:58306087:58306216:+	0	+
#Deleted in new
chr19	58306087	58306216	ENSG00000267216.1|AC020915.2|pc|chr19:58306087:58306216:+	0	+
#Deleted in new
chr19	58306087	58306216	ENSG00000283515.1|AC020915.6|pc|chr19:58306087:58306216:+	0	+
#Deleted in new
chr19	58306087	58306634	ENSG00000142396.10|AC020915.1|pc|chr19:58306087:58306634:+	0	+
#Deleted in new
chr19	58309029	58312462	ENSG00000142396.10|AC020915.1|pc|chr19:58309029:58312462:+	0	+
#Deleted in new
chr19	58310448	58312288	ENSG00000283103.1|AC010642.2|lncRNA|chr19:58310448:58312288:-	0	-
#Deleted in new
chr19	58311198	58311380	ENSG00000142396.10|AC020915.1|pc|chr19:58311198:58311380:+	0	+
#Deleted in new
chr19	58312020	58312061	ENSG00000142396.10|AC020915.1|pc|chr19:58312020:58312061:+	0	+
#Deleted in new
chr19	58312020	58312386	ENSG00000142396.10|AC020915.1|pc|chr19:58312020:58312386:+	0	+
#Deleted in new
chr19	58312027	58312462	ENSG00000142396.10|AC020915.1|pc|chr19:58312027:58312462:+	0	+
#Deleted in new
chr19	58312165	58312314	ENSG00000142396.10|AC020915.1|pc|chr19:58312165:58312314:+	0	+
#Deleted in new
chr19	58312165	58312462	ENSG00000142396.10|AC020915.1|pc|chr19:58312165:58312462:+	0	+
#Deleted in new
chr19	58312165	58312462	ENSG00000267216.1|AC020915.2|pc|chr19:58312165:58312462:+	0	+
#Deleted in new
chr19	58312165	58312462	ENSG00000283515.1|AC020915.6|pc|chr19:58312165:58312462:+	0	+
#Deleted in new
chr19	58312196	58312462	ENSG00000142396.10|AC020915.1|pc|chr19:58312196:58312462:+	0	+
#Deleted in new
chr19	58312969	58313113	ENSG00000283103.1|AC010642.2|lncRNA|chr19:58312969:58313113:-	0	-
#Deleted in new
chr19	58314747	58314781	ENSG00000142396.10|AC020915.1|pc|chr19:58314747:58314781:+	0	+
#Deleted in new
chr19	58314747	58315183	ENSG00000283515.1|AC020915.6|pc|chr19:58314747:58315183:+	0	+
#Deleted in new
chr19	58314747	58315197	ENSG00000267216.1|AC020915.2|pc|chr19:58314747:58315197:+	0	+
#Deleted in new
chr19	58314747	58315202	ENSG00000142396.10|AC020915.1|pc|chr19:58314747:58315202:+	0	+
#Deleted in new
chr19	58314747	58315203	ENSG00000142396.10|AC020915.1|pc|chr19:58314747:58315203:+	0	+
#Deleted in new
chr19	58314747	58315663	ENSG00000142396.10|AC020915.1|pc|chr19:58314747:58315663:+	0	+
#Deleted in new
chr19	58314805	58315036	ENSG00000283103.1|AC010642.2|lncRNA|chr19:58314805:58315036:-	0	-
#Deleted in new
chr19	58325274	58325361	ENSG00000283103.1|AC010642.2|lncRNA|chr19:58325274:58325361:-	0	-
#Deleted in new
chr19	58326822	58326933	ENSG00000283103.1|AC010642.2|lncRNA|chr19:58326822:58326933:-	0	-
#Deleted in new
chr19	58327018	58327114	ENSG00000182318.5|ZSCAN22|pc|chr19:58327018:58327114:+	0	+
#Deleted in new
chr19	5832860	5832905	ENSG00000156413.13|FUT6|pc|chr19:5832860:5832905:-	0	-
#Deleted in new
chr19	5834306	5834486	ENSG00000156413.13|FUT6|pc|chr19:5834306:5834486:-	0	-
#Partially deleted in new
chr19	58345177	58347029	ENSG00000121410.11|A1BG|pc|chr19:58345177:58347029:-	0	-
#Deleted in new
chr19	5834771	5835077	ENSG00000156413.13|FUT6|pc|chr19:5834771:5835077:-	0	-
#Deleted in new
chr19	5834839	5835077	ENSG00000156413.13|FUT6|pc|chr19:5834839:5835077:-	0	-
#Deleted in new
chr19	5834949	5835077	ENSG00000156413.13|FUT6|pc|chr19:5834949:5835077:-	0	-
#Deleted in new
chr19	58352097	58352184	ENSG00000121410.11|A1BG|pc|chr19:58352097:58352184:-	0	-
#Deleted in new
chr19	58353713	58353857	ENSG00000268895.5|A1BG-AS1|lncRNA|chr19:58353713:58353857:+	0	+
#Deleted in new
chr19	58353713	58354039	ENSG00000268895.5|A1BG-AS1|lncRNA|chr19:58353713:58354039:+	0	+
#Deleted in new
chr19	58353713	58354425	ENSG00000268895.5|A1BG-AS1|lncRNA|chr19:58353713:58354425:+	0	+
#Deleted in new
chr19	58353713	58354502	ENSG00000268895.5|A1BG-AS1|lncRNA|chr19:58353713:58354502:+	0	+
#Deleted in new
chr19	58353713	58354713	ENSG00000268895.5|A1BG-AS1|lncRNA|chr19:58353713:58354713:+	0	+
#Deleted in new
chr19	58353713	58355183	ENSG00000268895.5|A1BG-AS1|lncRNA|chr19:58353713:58355183:+	0	+
#Deleted in new
chr19	58354368	58354724	ENSG00000268895.5|A1BG-AS1|lncRNA|chr19:58354368:58354724:+	0	+
#Deleted in new
chr19	58354368	58355183	ENSG00000268895.5|A1BG-AS1|lncRNA|chr19:58354368:58355183:+	0	+
#Deleted in new
chr19	58355860	58356083	ENSG00000268230.5|AC012313.3|lncRNA|chr19:58355860:58356083:-	0	-
#Partially deleted in new
chr19	58357438	58357649	ENSG00000174586.10|ZNF497|pc|chr19:58357438:58357649:-	0	-
#Deleted in new
chr19	58357584	58357649	ENSG00000268230.5|AC012313.3|lncRNA|chr19:58357584:58357649:-	0	-
#Deleted in new
chr19	58357951	58358286	ENSG00000174586.10|ZNF497|pc|chr19:58357951:58358286:-	0	-
#Deleted in new
chr19	58357951	58358286	ENSG00000268230.5|AC012313.3|lncRNA|chr19:58357951:58358286:-	0	-
#Deleted in new
chr19	58357998	58358238	ENSG00000268049.1|AC012313.2|lncRNA|chr19:58357998:58358238:+	0	+
#Deleted in new
chr19	58358488	58358585	ENSG00000174586.10|ZNF497|pc|chr19:58358488:58358585:-	0	-
#Deleted in new
chr19	58358488	58358585	ENSG00000268230.5|AC012313.3|lncRNA|chr19:58358488:58358585:-	0	-
#Partially deleted in new
chr19	58358689	58359603	ENSG00000268049.1|AC012313.2|lncRNA|chr19:58358689:58359603:+	0	+
#Deleted in new
chr19	58359196	58359323	ENSG00000268230.5|AC012313.3|lncRNA|chr19:58359196:58359323:-	0	-
#Deleted in new
chr19	58362584	58362752	ENSG00000269054.1|AC012313.6|lncRNA|chr19:58362584:58362752:+	0	+
#Deleted in new
chr19	58362676	58362751	ENSG00000268230.5|AC012313.3|lncRNA|chr19:58362676:58362751:-	0	-
#Deleted in new
chr19	58362676	58362754	ENSG00000174586.10|ZNF497|pc|chr19:58362676:58362754:-	0	-
#Deleted in new
chr19	58362676	58362825	ENSG00000174586.10|ZNF497|pc|chr19:58362676:58362825:-	0	-
#Deleted in new
chr19	58362676	58362848	ENSG00000174586.10|ZNF497|pc|chr19:58362676:58362848:-	0	-
#Deleted in new
chr19	58364535	58364599	ENSG00000269054.1|AC012313.6|lncRNA|chr19:58364535:58364599:+	0	+
#Deleted in new
chr19	58366033	58366591	ENSG00000269054.1|AC012313.6|lncRNA|chr19:58366033:58366591:+	0	+
#Deleted in new
chr19	58369716	58369928	ENSG00000152475.6|ZNF837|pc|chr19:58369716:58369928:-	0	-
#Deleted in new
chr19	58369818	58369928	ENSG00000152475.6|ZNF837|pc|chr19:58369818:58369928:-	0	-
#Deleted in new
chr19	5837883	5839722	ENSG00000156413.13|FUT6|pc|chr19:5837883:5839722:-	0	-
#Deleted in new
chr19	58380940	58381022	ENSG00000152475.6|ZNF837|pc|chr19:58380940:58381022:-	0	-
#Deleted in new
chr19	58380940	58381060	ENSG00000152475.6|ZNF837|pc|chr19:58380940:58381060:-	0	-
#Deleted in new
chr19	5838173	5838373	ENSG00000156413.13|FUT6|pc|chr19:5838173:5838373:-	0	-
#Deleted in new
chr19	5838173	5838399	ENSG00000156413.13|FUT6|pc|chr19:5838173:5838399:-	0	-
#Deleted in new
chr19	58386399	58386622	ENSG00000083845.8|RPS5|pc|chr19:58386399:58386622:+	0	+
#Deleted in new
chr19	58386506	58386622	ENSG00000083845.8|RPS5|pc|chr19:58386506:58386622:+	0	+
#Deleted in new
chr19	5838676	5838730	ENSG00000156413.13|FUT6|pc|chr19:5838676:5838730:-	0	-
#Deleted in new
chr19	5838676	5838732	ENSG00000156413.13|FUT6|pc|chr19:5838676:5838732:-	0	-
#Deleted in new
chr19	5838676	5838746	ENSG00000156413.13|FUT6|pc|chr19:5838676:5838746:-	0	-
#Deleted in new
chr19	5838676	5838760	ENSG00000156413.13|FUT6|pc|chr19:5838676:5838760:-	0	-
#Deleted in new
chr19	5838676	5838790	ENSG00000156413.13|FUT6|pc|chr19:5838676:5838790:-	0	-
#Deleted in new
chr19	5838676	5838825	ENSG00000156413.13|FUT6|pc|chr19:5838676:5838825:-	0	-
#Deleted in new
chr19	5838676	5839017	ENSG00000156413.13|FUT6|pc|chr19:5838676:5839017:-	0	-
#Deleted in new
chr19	5838676	5839717	ENSG00000156413.13|FUT6|pc|chr19:5838676:5839717:-	0	-
#Deleted in new
chr19	5838676	5839731	ENSG00000156413.13|FUT6|pc|chr19:5838676:5839731:-	0	-
#Deleted in new
chr19	58388417	58388480	ENSG00000083845.8|RPS5|pc|chr19:58388417:58388480:+	0	+
#Deleted in new
chr19	5839405	5839692	ENSG00000156413.13|FUT6|pc|chr19:5839405:5839692:-	0	-
#Deleted in new
chr19	58401503	58401662	ENSG00000171574.17|ZNF584|pc|chr19:58401503:58401662:+	0	+
#Deleted in new
chr19	58401570	58401662	ENSG00000171574.17|ZNF584|pc|chr19:58401570:58401662:+	0	+
#Partially deleted in new
chr19	58404237	58407296	ENSG00000232098.3|AC012313.1|lncRNA|chr19:58404237:58407296:-	0	-
#Deleted in new
chr19	58404719	58404825	ENSG00000232098.3|AC012313.1|lncRNA|chr19:58404719:58404825:-	0	-
#Deleted in new
chr19	58405006	58405362	ENSG00000232098.3|AC012313.1|lncRNA|chr19:58405006:58405362:-	0	-
#Partially deleted in new
chr19	58407129	58407177	ENSG00000232098.3|AC012313.1|lncRNA|chr19:58407129:58407177:-	0	-
#Deleted in new
chr19	58408126	58408484	ENSG00000232098.3|AC012313.1|lncRNA|chr19:58408126:58408484:-	0	-
#Deleted in new
chr19	58408624	58409165	ENSG00000171574.17|ZNF584|pc|chr19:58408624:58409165:+	0	+
#Deleted in new
chr19	58408673	58409206	ENSG00000171574.17|ZNF584|pc|chr19:58408673:58409206:+	0	+
#Deleted in new
chr19	58408687	58409165	ENSG00000171574.17|ZNF584|pc|chr19:58408687:58409165:+	0	+
#Deleted in new
chr19	58408688	58409165	ENSG00000171574.17|ZNF584|pc|chr19:58408688:58409165:+	0	+
#Deleted in new
chr19	58408751	58409165	ENSG00000171574.17|ZNF584|pc|chr19:58408751:58409165:+	0	+
#Deleted in new
chr19	58408776	58409165	ENSG00000171574.17|ZNF584|pc|chr19:58408776:58409165:+	0	+
#Deleted in new
chr19	58415523	58415552	ENSG00000171574.17|ZNF584|pc|chr19:58415523:58415552:+	0	+
#Deleted in new
chr19	58415523	58415621	ENSG00000171574.17|ZNF584|pc|chr19:58415523:58415621:+	0	+
#Deleted in new
chr19	58415523	58415646	ENSG00000171574.17|ZNF584|pc|chr19:58415523:58415646:+	0	+
#Deleted in new
chr19	58415792	58415940	ENSG00000171574.17|ZNF584|pc|chr19:58415792:58415940:+	0	+
#Deleted in new
chr19	58415818	58415940	ENSG00000171574.17|ZNF584|pc|chr19:58415818:58415940:+	0	+
#Deleted in new
chr19	58418559	58418981	ENSG00000268543.1|AC012313.4|lncRNA|chr19:58418559:58418981:+	0	+
#Deleted in new
chr19	58419237	58419310	ENSG00000268543.1|AC012313.4|lncRNA|chr19:58419237:58419310:+	0	+
#Split in new
chr19	58428631	58431148	ENSG00000268912.1|AC012313.5|lncRNA|chr19:58428631:58431148:-	0	-
#Deleted in new
chr19	58435484	58435501	ENSG00000131849.11|ZNF132|pc|chr19:58435484:58435501:-	0	-
#Deleted in new
chr19	58435626	58435715	ENSG00000131849.11|ZNF132|pc|chr19:58435626:58435715:-	0	-
#Deleted in new
chr19	58436286	58436299	ENSG00000131849.11|ZNF132|pc|chr19:58436286:58436299:-	0	-
#Deleted in new
chr19	58439758	58440222	ENSG00000131849.11|ZNF132|pc|chr19:58439758:58440222:-	0	-
#Partially deleted in new
chr19	58440447	58445849	ENSG00000269473.1|AC012313.8|lncRNA|chr19:58440447:58445849:+	0	+
#Partially deleted in new
chr19	58452127	58452782	ENSG00000249471.7|ZNF324B|pc|chr19:58452127:58452782:+	0	+
#Deleted in new
chr19	58453186	58453266	ENSG00000249471.7|ZNF324B|pc|chr19:58453186:58453266:+	0	+
#Deleted in new
chr19	5846425	5846564	ENSG00000171124.12|FUT3|pc|chr19:5846425:5846564:-	0	-
#Deleted in new
chr19	5846425	5846599	ENSG00000171124.12|FUT3|pc|chr19:5846425:5846599:-	0	-
#Deleted in new
chr19	5846425	5846618	ENSG00000171124.12|FUT3|pc|chr19:5846425:5846618:-	0	-
#Deleted in new
chr19	5846425	5846966	ENSG00000171124.12|FUT3|pc|chr19:5846425:5846966:-	0	-
#Deleted in new
chr19	5846425	5847034	ENSG00000171124.12|FUT3|pc|chr19:5846425:5847034:-	0	-
#Deleted in new
chr19	5846564	5846966	ENSG00000171124.12|FUT3|pc|chr19:5846564:5846966:-	0	-
#Deleted in new
chr19	58467044	58467183	ENSG00000083812.11|ZNF324|pc|chr19:58467044:58467183:+	0	+
#Deleted in new
chr19	58467055	58467758	ENSG00000083812.11|ZNF324|pc|chr19:58467055:58467758:+	0	+
#Deleted in new
chr19	58467095	58467183	ENSG00000083812.11|ZNF324|pc|chr19:58467095:58467183:+	0	+
#Deleted in new
chr19	5846806	5846966	ENSG00000171124.12|FUT3|pc|chr19:5846806:5846966:-	0	-
#Deleted in new
chr19	5847466	5847768	ENSG00000267709.1|AC024592.2|lncRNA|chr19:5847466:5847768:+	0	+
#Deleted in new
chr19	5847582	5847694	ENSG00000171124.12|FUT3|pc|chr19:5847582:5847694:-	0	-
#Deleted in new
chr19	5847582	5847708	ENSG00000171124.12|FUT3|pc|chr19:5847582:5847708:-	0	-
#Deleted in new
chr19	58483531	58483646	ENSG00000083807.9|SLC27A5|pc|chr19:58483531:58483646:-	0	-
#Deleted in new
chr19	5848739	5848771	ENSG00000171124.12|FUT3|pc|chr19:5848739:5848771:-	0	-
#Deleted in new
chr19	5848833	5848901	ENSG00000171124.12|FUT3|pc|chr19:5848833:5848901:-	0	-
#Deleted in new
chr19	5848833	5848905	ENSG00000171124.12|FUT3|pc|chr19:5848833:5848905:-	0	-
#Deleted in new
chr19	5849477	5849545	ENSG00000171124.12|FUT3|pc|chr19:5849477:5849545:-	0	-
#Deleted in new
chr19	5850166	5850319	ENSG00000171124.12|FUT3|pc|chr19:5850166:5850319:-	0	-
#Deleted in new
chr19	5851389	5851449	ENSG00000171124.12|FUT3|pc|chr19:5851389:5851449:-	0	-
#Deleted in new
chr19	5851389	5851471	ENSG00000171124.12|FUT3|pc|chr19:5851389:5851471:-	0	-
#Deleted in new
chr19	5851389	5851474	ENSG00000171124.12|FUT3|pc|chr19:5851389:5851474:-	0	-
#Deleted in new
chr19	5852503	5852673	ENSG00000267709.1|AC024592.2|lncRNA|chr19:5852503:5852673:+	0	+
#Deleted in new
chr19	58538700	58538911	ENSG00000119574.12|ZBTB45|pc|chr19:58538700:58538911:-	0	-
#Deleted in new
chr19	5854570	5854662	ENSG00000267709.1|AC024592.2|lncRNA|chr19:5854570:5854662:+	0	+
#Partially deleted in new
chr19	58571857	58571955	ENSG00000267858.5|MZF1-AS1|lncRNA|chr19:58571857:58571955:+	0	+
#Deleted in new
chr19	5857615	5858239	ENSG00000267709.1|AC024592.2|lncRNA|chr19:5857615:5858239:+	0	+
#Deleted in new
chr19	58593895	58594125	ENSG00000269600.1|AC016629.3|lncRNA|chr19:58593895:58594125:-	0	-
#Deleted in new
chr19	58597182	58597816	ENSG00000269600.1|AC016629.3|lncRNA|chr19:58597182:58597816:-	0	-
#Deleted in new
chr19	58597705	58597816	ENSG00000269600.1|AC016629.3|lncRNA|chr19:58597705:58597816:-	0	-
#Deleted in new
chr19	5870464	5870540	ENSG00000130383.7|FUT5|pc|chr19:5870464:5870540:-	0	-
#Deleted in new
chr19	5870464	5870623	ENSG00000267740.5|AC024592.3|pc|chr19:5870464:5870623:-	0	-
#Partially deleted in new
chr19	5891275	5893290	ENSG00000174886.12|NDUFA11|pc|chr19:5891275:5893290:-	0	-
#Partially deleted in new
chr19	5894674	5896575	ENSG00000174886.12|NDUFA11|pc|chr19:5894674:5896575:-	0	-
#Deleted in new
chr19	5899894	5900009	ENSG00000266941.1|AC024592.1|lncRNA|chr19:5899894:5900009:+	0	+
#Deleted in new
chr19	5899909	5900009	ENSG00000266941.1|AC024592.1|lncRNA|chr19:5899909:5900009:+	0	+
#Deleted in new
chr19	5901270	5901511	ENSG00000266941.1|AC024592.1|lncRNA|chr19:5901270:5901511:+	0	+
#Deleted in new
chr19	5901276	5901461	ENSG00000266941.1|AC024592.1|lncRNA|chr19:5901276:5901461:+	0	+
#Deleted in new
chr19	5901334	5901454	ENSG00000174886.12|NDUFA11|pc|chr19:5901334:5901454:-	0	-
#Deleted in new
chr19	5902430	5902639	ENSG00000174886.12|NDUFA11|pc|chr19:5902430:5902639:-	0	-
#Deleted in new
chr19	5911577	5911768	ENSG00000267571.1|AC104532.2|lncRNA|chr19:5911577:5911768:-	0	-
#Partially deleted in new
chr19	5911706	5914309	ENSG00000105519.15|CAPS|pc|chr19:5911706:5914309:+	0	+
#Deleted in new
chr19	5912338	5912441	ENSG00000105519.15|CAPS|pc|chr19:5912338:5912441:+	0	+
#Deleted in new
chr19	5913501	5913899	ENSG00000267571.1|AC104532.2|lncRNA|chr19:5913501:5913899:-	0	-
#Partially deleted in new
chr19	5920891	5921321	ENSG00000031823.14|RANBP3|pc|chr19:5920891:5921321:-	0	-
#Partially deleted in new
chr19	5924826	5925737	ENSG00000031823.14|RANBP3|pc|chr19:5924826:5925737:-	0	-
#Deleted in new
chr19	5928279	5928313	ENSG00000031823.14|RANBP3|pc|chr19:5928279:5928313:-	0	-
#Partially deleted in new
chr19	5932451	5933318	ENSG00000031823.14|RANBP3|pc|chr19:5932451:5933318:-	0	-
#Partially deleted in new
chr19	5933413	5934462	ENSG00000031823.14|RANBP3|pc|chr19:5933413:5934462:-	0	-
#Deleted in new
chr19	5933802	5933929	ENSG00000031823.14|RANBP3|pc|chr19:5933802:5933929:-	0	-
#Deleted in new
chr19	5935684	5935839	ENSG00000031823.14|RANBP3|pc|chr19:5935684:5935839:-	0	-
#Deleted in new
chr19	5950576	5950872	ENSG00000031823.14|RANBP3|pc|chr19:5950576:5950872:-	0	-
#Deleted in new
chr19	5950716	5950872	ENSG00000031823.14|RANBP3|pc|chr19:5950716:5950872:-	0	-
#Deleted in new
chr19	5950716	5950875	ENSG00000031823.14|RANBP3|pc|chr19:5950716:5950875:-	0	-
#Deleted in new
chr19	5965732	5965922	ENSG00000031823.14|RANBP3|pc|chr19:5965732:5965922:-	0	-
#Deleted in new
chr19	5976380	5976574	ENSG00000031823.14|RANBP3|pc|chr19:5976380:5976574:-	0	-
#Deleted in new
chr19	5976380	5976579	ENSG00000031823.14|RANBP3|pc|chr19:5976380:5976579:-	0	-
#Deleted in new
chr19	5978402	5978514	ENSG00000266983.1|AC011444.1|lncRNA|chr19:5978402:5978514:+	0	+
#Deleted in new
chr1	95991985	95992238	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95991985:95992238:+	0	+
#Deleted in new
chr1	95991986	95992238	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95991986:95992238:+	0	+
#Deleted in new
chr1	95991988	95992509	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95991988:95992509:+	0	+
#Deleted in new
chr1	95992011	95992238	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95992011:95992238:+	0	+
#Deleted in new
chr1	95992025	95992122	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95992025:95992122:+	0	+
#Deleted in new
chr1	95992025	95992238	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95992025:95992238:+	0	+
#Deleted in new
chr1	95992025	95992509	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95992025:95992509:+	0	+
#Deleted in new
chr1	95992031	95992509	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95992031:95992509:+	0	+
#Deleted in new
chr1	95992067	95992122	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95992067:95992122:+	0	+
#Deleted in new
chr1	95992089	95992238	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95992089:95992238:+	0	+
#Deleted in new
chr1	95992100	95992238	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95992100:95992238:+	0	+
#Deleted in new
chr1	95992402	95992509	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95992402:95992509:+	0	+
#Deleted in new
chr1	95992440	95992509	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95992440:95992509:+	0	+
#Deleted in new
chr1	95995234	95995620	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95995234:95995620:+	0	+
#Deleted in new
chr1	95995236	95995844	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95995236:95995844:+	0	+
#Deleted in new
chr1	95996120	95996194	ENSG00000237435.9|AC099566.1|lncRNA|chr1:95996120:95996194:+	0	+
#Deleted in new
chr1	96003362	96003444	ENSG00000237435.9|AC099566.1|lncRNA|chr1:96003362:96003444:+	0	+
#Deleted in new
chr19	6012119	6012224	ENSG00000266983.1|AC011444.1|lncRNA|chr19:6012119:6012224:+	0	+
#Deleted in new
chr19	6019835	6019943	ENSG00000266983.1|AC011444.1|lncRNA|chr19:6019835:6019943:+	0	+
#Deleted in new
chr19	6020049	6020363	ENSG00000266983.1|AC011444.1|lncRNA|chr19:6020049:6020363:+	0	+
#Deleted in new
chr1	96021297	96021396	ENSG00000237435.9|AC099566.1|lncRNA|chr1:96021297:96021396:+	0	+
#Deleted in new
chr19	6023095	6023205	ENSG00000087903.12|RFX2|pc|chr19:6023095:6023205:-	0	-
#Deleted in new
chr19	6027163	6027334	ENSG00000087903.12|RFX2|pc|chr19:6027163:6027334:-	0	-
#Deleted in new
chr19	6049135	6049232	ENSG00000087903.12|RFX2|pc|chr19:6049135:6049232:-	0	-
#Deleted in new
chr19	6057161	6057283	ENSG00000087903.12|RFX2|pc|chr19:6057161:6057283:-	0	-
#Deleted in new
chr19	6067952	6068419	ENSG00000267262.1|AC011444.2|lncRNA|chr19:6067952:6068419:+	0	+
#Deleted in new
chr19	6077019	6077119	ENSG00000267262.1|AC011444.2|lncRNA|chr19:6077019:6077119:+	0	+
#Deleted in new
chr19	6078100	6078334	ENSG00000087903.12|RFX2|pc|chr19:6078100:6078334:-	0	-
#Deleted in new
chr1	9611014	9611073	ENSG00000188807.12|TMEM201|pc|chr1:9611014:9611073:+	0	+
#Deleted in new
chr19	6113561	6113761	ENSG00000087903.12|RFX2|pc|chr19:6113561:6113761:-	0	-
#Deleted in new
chr19	6125533	6125797	ENSG00000267299.1|AC011444.3|lncRNA|chr19:6125533:6125797:+	0	+
#Deleted in new
chr19	6135246	6135360	ENSG00000130377.13|ACSBG2|pc|chr19:6135246:6135360:+	0	+
#Deleted in new
chr19	6135634	6135909	ENSG00000130377.13|ACSBG2|pc|chr19:6135634:6135909:+	0	+
#Deleted in new
chr19	6135639	6135663	ENSG00000130377.13|ACSBG2|pc|chr19:6135639:6135663:+	0	+
#Deleted in new
chr19	6135646	6135673	ENSG00000130377.13|ACSBG2|pc|chr19:6135646:6135673:+	0	+
#Deleted in new
chr19	6135668	6135864	ENSG00000130377.13|ACSBG2|pc|chr19:6135668:6135864:+	0	+
#Deleted in new
chr19	6135673	6135918	ENSG00000130377.13|ACSBG2|pc|chr19:6135673:6135918:+	0	+
#Deleted in new
chr19	6135680	6135909	ENSG00000130377.13|ACSBG2|pc|chr19:6135680:6135909:+	0	+
#Deleted in new
chr19	6135682	6135918	ENSG00000130377.13|ACSBG2|pc|chr19:6135682:6135918:+	0	+
#Deleted in new
chr19	6135700	6135864	ENSG00000130377.13|ACSBG2|pc|chr19:6135700:6135864:+	0	+
#Deleted in new
chr19	6135823	6135909	ENSG00000130377.13|ACSBG2|pc|chr19:6135823:6135909:+	0	+
#Deleted in new
chr19	6137311	6137415	ENSG00000130377.13|ACSBG2|pc|chr19:6137311:6137415:+	0	+
#Deleted in new
chr19	6148230	6148329	ENSG00000087903.12|RFX2|pc|chr19:6148230:6148329:-	0	-
#Deleted in new
chr19	6160559	6160758	ENSG00000130377.13|ACSBG2|pc|chr19:6160559:6160758:+	0	+
#Partially deleted in new
chr19	6161479	6161586	ENSG00000130377.13|ACSBG2|pc|chr19:6161479:6161586:+	0	+
#Deleted in new
chr19	6175290	6175429	ENSG00000130377.13|ACSBG2|pc|chr19:6175290:6175429:+	0	+
#Partially deleted in new
chr19	6177228	6177361	ENSG00000130377.13|ACSBG2|pc|chr19:6177228:6177361:+	0	+
#Partially deleted in new
chr19	6177228	6177368	ENSG00000130377.13|ACSBG2|pc|chr19:6177228:6177368:+	0	+
#Partially deleted in new
chr19	6177228	6177396	ENSG00000130377.13|ACSBG2|pc|chr19:6177228:6177396:+	0	+
#Partially deleted in new
chr19	6189727	6192053	ENSG00000087903.12|RFX2|pc|chr19:6189727:6192053:-	0	-
#Deleted in new
chr19	6191325	6191594	ENSG00000087903.12|RFX2|pc|chr19:6191325:6191594:-	0	-
#Deleted in new
chr19	6191569	6192029	ENSG00000087903.12|RFX2|pc|chr19:6191569:6192029:-	0	-
#Deleted in new
chr19	6191864	6192029	ENSG00000087903.12|RFX2|pc|chr19:6191864:6192029:-	0	-
#Partially deleted in new
chr19	6192667	6193089	ENSG00000130377.13|ACSBG2|pc|chr19:6192667:6193089:+	0	+
#Partially deleted in new
chr19	6192667	6193091	ENSG00000130377.13|ACSBG2|pc|chr19:6192667:6193091:+	0	+
#Partially deleted in new
chr19	6192667	6193094	ENSG00000130377.13|ACSBG2|pc|chr19:6192667:6193094:+	0	+
#Split in new
chr1	96254068	96255750	ENSG00000231987.1|LINC01787|lncRNA|chr1:96254068:96255750:-	0	-
#Deleted in new
chr19	6259156	6259278	ENSG00000267563.1|AC011471.2|lncRNA|chr19:6259156:6259278:+	0	+
#Deleted in new
chr19	6259398	6259799	ENSG00000267563.1|AC011471.2|lncRNA|chr19:6259398:6259799:+	0	+
#Deleted in new
chr19	6263067	6263469	ENSG00000280394.1|AC011471.3|lncRNA|chr19:6263067:6263469:-	0	-
#Deleted in new
chr1	96304272	96304338	ENSG00000231987.1|LINC01787|lncRNA|chr1:96304272:96304338:-	0	-
#Deleted in new
chr19	6343760	6343961	ENSG00000269802.1|AC011491.3|lncRNA|chr19:6343760:6343961:-	0	-
#Deleted in new
chr19	6353355	6353467	ENSG00000269802.1|AC011491.3|lncRNA|chr19:6353355:6353467:-	0	-
#Deleted in new
chr19	6360162	6360373	ENSG00000269802.1|AC011491.3|lncRNA|chr19:6360162:6360373:-	0	-
#Deleted in new
chr19	637104	637537	ENSG00000261204.1|AC004449.1|lncRNA|chr19:637104:637537:-	0	-
#Deleted in new
chr1	96374081	96374125	ENSG00000231987.1|LINC01787|lncRNA|chr1:96374081:96374125:-	0	-
#Partially deleted in new
chr19	6379568	6380485	ENSG00000125651.13|GTF2F1|pc|chr19:6379568:6380485:-	0	-
#Deleted in new
chr19	6386761	6387108	ENSG00000269444.1|AC011491.2|lncRNA|chr19:6386761:6387108:-	0	-
#Deleted in new
chr19	6390300	6390400	ENSG00000269444.1|AC011491.2|lncRNA|chr19:6390300:6390400:-	0	-
#Deleted in new
chr19	6392202	6392410	ENSG00000125651.13|GTF2F1|pc|chr19:6392202:6392410:-	0	-
#Partially deleted in new
chr19	6421000	6421688	ENSG00000088247.17|KHSRP|pc|chr19:6421000:6421688:-	0	-
#Partially deleted in new
chr19	6424137	6424277	ENSG00000088247.17|KHSRP|pc|chr19:6424137:6424277:-	0	-
#Deleted in new
chr19	6430520	6430618	ENSG00000181240.13|SLC25A41|pc|chr19:6430520:6430618:-	0	-
#Deleted in new
chr19	6436078	6436464	ENSG00000125648.14|SLC25A23|pc|chr19:6436078:6436464:-	0	-
#Deleted in new
chr19	6436080	6436464	ENSG00000125648.14|SLC25A23|pc|chr19:6436080:6436464:-	0	-
#Deleted in new
chr19	6436191	6436464	ENSG00000125648.14|SLC25A23|pc|chr19:6436191:6436464:-	0	-
#Deleted in new
chr19	6436420	6436464	ENSG00000125648.14|SLC25A23|pc|chr19:6436420:6436464:-	0	-
#Deleted in new
chr19	6438190	6438312	ENSG00000125648.14|SLC25A23|pc|chr19:6438190:6438312:-	0	-
#Deleted in new
chr19	6438446	6438534	ENSG00000125648.14|SLC25A23|pc|chr19:6438446:6438534:-	0	-
#Deleted in new
chr19	6438723	6438771	ENSG00000125648.14|SLC25A23|pc|chr19:6438723:6438771:-	0	-
#Deleted in new
chr19	6438723	6438821	ENSG00000125648.14|SLC25A23|pc|chr19:6438723:6438821:-	0	-
#Deleted in new
chr19	6443561	6443656	ENSG00000125648.14|SLC25A23|pc|chr19:6443561:6443656:-	0	-
#Partially deleted in new
chr19	6469464	6470152	ENSG00000275234.1|AC010503.4|lncRNA|chr19:6469464:6470152:+	0	+
#Deleted in new
chr19	6482482	6482557	ENSG00000205744.9|DENND1C|pc|chr19:6482482:6482557:-	0	-
#Deleted in new
chr19	6496369	6496463	ENSG00000104833.11|TUBB4A|pc|chr19:6496369:6496463:-	0	-
#Deleted in new
chr19	6500615	6500742	ENSG00000104833.11|TUBB4A|pc|chr19:6500615:6500742:-	0	-
#Partially deleted in new
chr19	6500927	6501397	ENSG00000104833.11|TUBB4A|pc|chr19:6500927:6501397:-	0	-
#Partially deleted in new
chr19	652357	652884	ENSG00000070423.17|RNF126|pc|chr19:652357:652884:-	0	-
#Deleted in new
chr19	6532785	6532816	ENSG00000125657.4|TNFSF9|pc|chr19:6532785:6532816:+	0	+
#Deleted in new
chr19	6583182	6583478	ENSG00000125726.10|CD70|pc|chr19:6583182:6583478:-	0	-
#Deleted in new
chr19	6592415	6592575	ENSG00000125726.10|CD70|pc|chr19:6592415:6592575:-	0	-
#Deleted in new
chr19	6603940	6604103	ENSG00000125726.10|CD70|pc|chr19:6603940:6604103:-	0	-
#Deleted in new
chr19	661355	661402	ENSG00000070423.17|RNF126|pc|chr19:661355:661402:-	0	-
#Partially deleted in new
chr19	663481	664511	ENSG00000267666.2|AC004156.1|lncRNA|chr19:663481:664511:+	0	+
#Partially deleted in new
chr19	6661252	6665350	ENSG00000125735.10|TNFSF14|pc|chr19:6661252:6665350:-	0	-
#Partially deleted in new
chr19	6670295	6670588	ENSG00000125735.10|TNFSF14|pc|chr19:6670295:6670588:-	0	-
#Deleted in new
chr19	667211	669500	ENSG00000267666.2|AC004156.1|lncRNA|chr19:667211:669500:+	0	+
#Partially deleted in new
chr19	6682141	6683360	ENSG00000125730.16|C3|pc|chr19:6682141:6683360:-	0	-
#Partially deleted in new
chr19	6702470	6702872	ENSG00000125730.16|C3|pc|chr19:6702470:6702872:-	0	-
#Deleted in new
chr19	6716385	6717742	ENSG00000276980.1|AC008760.2|lncRNA|chr19:6716385:6717742:-	0	-
#Partially deleted in new
chr19	6723440	6723763	ENSG00000125730.16|C3|pc|chr19:6723440:6723763:-	0	-
#Deleted in new
chr1	9672425	9672719	ENSG00000231789.2|PIK3CD-AS2|lncRNA|chr1:9672425:9672719:-	0	-
#Partially deleted in new
chr19	6735373	6735704	ENSG00000125734.15|GPR108|pc|chr19:6735373:6735704:-	0	-
#Partially deleted in new
chr19	6748292	6748871	ENSG00000269680.1|AC008760.1|lncRNA|chr19:6748292:6748871:-	0	-
#Deleted in new
chr19	6752159	6752228	ENSG00000125731.12|SH2D3A|pc|chr19:6752159:6752228:-	0	-
#Deleted in new
chr19	6754830	6754932	ENSG00000125731.12|SH2D3A|pc|chr19:6754830:6754932:-	0	-
#Deleted in new
chr19	6757329	6759670	ENSG00000125731.12|SH2D3A|pc|chr19:6757329:6759670:-	0	-
#Deleted in new
chr19	6759593	6759670	ENSG00000125731.12|SH2D3A|pc|chr19:6759593:6759670:-	0	-
#Deleted in new
chr19	6761089	6761165	ENSG00000125731.12|SH2D3A|pc|chr19:6761089:6761165:-	0	-
#Partially deleted in new
chr19	6763679	6764481	ENSG00000125731.12|SH2D3A|pc|chr19:6763679:6764481:-	0	-
#Deleted in new
chr19	678060	678083	ENSG00000070404.9|FSTL3|pc|chr19:678060:678083:+	0	+
#Deleted in new
chr19	6784117	6784241	ENSG00000141968.7|VAV1|pc|chr19:6784117:6784241:+	0	+
#Deleted in new
chr1	9680711	9681135	ENSG00000231789.2|PIK3CD-AS2|lncRNA|chr1:9680711:9681135:-	0	-
#Partially deleted in new
chr19	680750	680812	ENSG00000070404.9|FSTL3|pc|chr19:680750:680812:+	0	+
#Deleted in new
chr19	6816435	6816471	ENSG00000141968.7|VAV1|pc|chr19:6816435:6816471:+	0	+
#Partially deleted in new
chr19	68402	69178	ENSG00000282542.1|AC008993.1|lncRNA|chr19:68402:69178:+	0	+
#Deleted in new
chr1	9687334	9687555	ENSG00000231789.2|PIK3CD-AS2|lncRNA|chr1:9687334:9687555:-	0	-
#Deleted in new
chr19	6890480	6890543	ENSG00000174837.14|ADGRE1|pc|chr19:6890480:6890543:+	0	+
#Deleted in new
chr19	6891149	6891226	ENSG00000174837.14|ADGRE1|pc|chr19:6891149:6891226:+	0	+
#Partially deleted in new
chr19	6894993	6896832	ENSG00000280091.1|AC020895.2|lncRNA|chr19:6894993:6896832:-	0	-
#Deleted in new
chr19	6908688	6908772	ENSG00000174837.14|ADGRE1|pc|chr19:6908688:6908772:+	0	+
#Deleted in new
chr19	6953210	6953349	ENSG00000268845.1|AC025278.1|lncRNA|chr19:6953210:6953349:+	0	+
#Deleted in new
chr19	7018970	7019076	ENSG00000196589.6|MBD3L2B|pc|chr19:7018970:7019076:-	0	-
#Deleted in new
chr19	7049320	7049418	ENSG00000230522.5|MBD3L2|pc|chr19:7049320:7049418:+	0	+
#Deleted in new
chr19	7069443	7069773	ENSG00000130544.11|ZNF557|pc|chr19:7069443:7069773:+	0	+
#Deleted in new
chr19	7069704	7069773	ENSG00000130544.11|ZNF557|pc|chr19:7069704:7069773:+	0	+
#Deleted in new
chr19	7070561	7070653	ENSG00000130544.11|ZNF557|pc|chr19:7070561:7070653:+	0	+
#Deleted in new
chr1	97095922	97095986	ENSG00000232878.3|DPYD-AS1|lncRNA|chr1:97095922:97095986:+	0	+
#Deleted in new
chr19	71777	72274	ENSG00000282807.3|AC008993.3|lncRNA|chr19:71777:72274:+	0	+
#Partially deleted in new
chr19	722503	722907	ENSG00000099864.17|PALM|pc|chr19:722503:722907:+	0	+
#Deleted in new
chr19	72584	72718	ENSG00000282807.3|AC008993.3|lncRNA|chr19:72584:72718:+	0	+
#Deleted in new
chr1	97265413	97265477	ENSG00000232878.3|DPYD-AS1|lncRNA|chr1:97265413:97265477:+	0	+
#Deleted in new
chr1	97265445	97265477	ENSG00000232878.3|DPYD-AS1|lncRNA|chr1:97265445:97265477:+	0	+
#Deleted in new
chr19	727785	727864	ENSG00000099864.17|PALM|pc|chr19:727785:727864:+	0	+
#Deleted in new
chr1	97279954	97280208	ENSG00000232878.3|DPYD-AS1|lncRNA|chr1:97279954:97280208:+	0	+
#Deleted in new
chr1	97295455	97296147	ENSG00000232878.3|DPYD-AS1|lncRNA|chr1:97295455:97296147:+	0	+
#Partially deleted in new
chr19	734172	735048	ENSG00000099864.17|PALM|pc|chr19:734172:735048:+	0	+
#Partially deleted in new
chr19	735054	735110	ENSG00000099864.17|PALM|pc|chr19:735054:735110:+	0	+
#Deleted in new
chr19	7390521	7390720	ENSG00000267852.1|AC119396.2|lncRNA|chr19:7390521:7390720:-	0	-
#Deleted in new
chr19	7392590	7392707	ENSG00000267852.1|AC119396.2|lncRNA|chr19:7392590:7392707:-	0	-
#Deleted in new
chr1	97394153	97394419	ENSG00000232542.1|DPYD-IT1|lncRNA|chr1:97394153:97394419:-	0	-
#Deleted in new
chr19	7394992	7395039	ENSG00000267852.1|AC119396.2|lncRNA|chr19:7394992:7395039:-	0	-
#Deleted in new
chr19	7395112	7395247	ENSG00000104880.17|ARHGEF18|pc|chr19:7395112:7395247:+	0	+
#Deleted in new
chr19	7395151	7395247	ENSG00000104880.17|ARHGEF18|pc|chr19:7395151:7395247:+	0	+
#Deleted in new
chr19	7483261	7483312	ENSG00000104883.7|PEX11G|pc|chr19:7483261:7483312:-	0	-
#Deleted in new
chr19	7489347	7489512	ENSG00000104883.7|PEX11G|pc|chr19:7489347:7489512:-	0	-
#Deleted in new
chr19	7490981	7491122	ENSG00000104883.7|PEX11G|pc|chr19:7490981:7491122:-	0	-
#Deleted in new
chr19	7492975	7493074	ENSG00000198723.10|TEX45|pc|chr19:7492975:7493074:+	0	+
#Deleted in new
chr19	7498926	7498945	ENSG00000198723.10|TEX45|pc|chr19:7498926:7498945:+	0	+
#Deleted in new
chr19	7499641	7499880	ENSG00000198723.10|TEX45|pc|chr19:7499641:7499880:+	0	+
#Deleted in new
chr19	7513879	7514005	ENSG00000267952.1|AC008878.1|pc|chr19:7513879:7514005:+	0	+
#Deleted in new
chr19	7515291	7515406	ENSG00000198816.6|ZNF358|pc|chr19:7515291:7515406:+	0	+
#Partially deleted in new
chr19	7524960	7525991	ENSG00000090674.15|MCOLN1|pc|chr19:7524960:7525991:+	0	+
#Deleted in new
chr19	7549700	7549766	ENSG00000032444.15|PNPLA6|pc|chr19:7549700:7549766:+	0	+
#Deleted in new
chr19	76162	76783	ENSG00000282591.1|FAM138F|lncRNA|chr19:76162:76783:-	0	-
#Deleted in new
chr19	76219	77090	ENSG00000282591.1|FAM138F|lncRNA|chr19:76219:77090:-	0	-
#Deleted in new
chr19	7631957	7632049	ENSG00000268400.5|AC008763.2|pc|chr19:7631957:7632049:+	0	+
#Partially deleted in new
chr19	763500	764318	ENSG00000099812.8|MISP|pc|chr19:763500:764318:+	0	+
#Partially deleted in new
chr19	7636271	7636990	ENSG00000268204.1|AC008763.1|lncRNA|chr19:7636271:7636990:-	0	-
#Partially deleted in new
chr19	7640134	7640353	ENSG00000076944.15|STXBP2|pc|chr19:7640134:7640353:+	0	+
#Deleted in new
chr19	7640354	7640417	ENSG00000076944.15|STXBP2|pc|chr19:7640354:7640417:+	0	+
#Deleted in new
chr19	7644878	7644934	ENSG00000076944.15|STXBP2|pc|chr19:7644878:7644934:+	0	+
#Partially deleted in new
chr19	7682241	7687703	ENSG00000181029.8|TRAPPC5|pc|chr19:7682241:7687703:+	0	+
#Deleted in new
chr19	76885	77090	ENSG00000282591.1|FAM138F|lncRNA|chr19:76885:77090:-	0	-
#Deleted in new
chr19	7732791	7732889	ENSG00000182566.13|CLEC4G|pc|chr19:7732791:7732889:-	0	-
#Deleted in new
chr19	7733837	7733906	ENSG00000182566.13|CLEC4G|pc|chr19:7733837:7733906:-	0	-
#Split in new
chr19	7745517	7746087	ENSG00000090659.17|CD209|pc|chr19:7745517:7746087:-	0	-
#Split in new
chr19	7745655	7746087	ENSG00000090659.17|CD209|pc|chr19:7745655:7746087:-	0	-
#Partially deleted in new
chr19	7746000	7746087	ENSG00000090659.17|CD209|pc|chr19:7746000:7746087:-	0	-
#Split in new
chr19	7765616	7765822	ENSG00000104938.16|CLEC4M|pc|chr19:7765616:7765822:+	0	+
#Split in new
chr19	7765616	7765862	ENSG00000104938.16|CLEC4M|pc|chr19:7765616:7765862:+	0	+
#Split in new
chr19	7765637	7765822	ENSG00000104938.16|CLEC4M|pc|chr19:7765637:7765822:+	0	+
#Deleted in new
chr19	781001	781862	ENSG00000272473.1|AC006273.1|lncRNA|chr19:781001:781862:-	0	-
#Deleted in new
chr19	784786	785080	ENSG00000267530.2|LINC01836|lncRNA|chr19:784786:785080:+	0	+
#Deleted in new
chr19	784814	784948	ENSG00000267530.2|LINC01836|lncRNA|chr19:784814:784948:+	0	+
#Partially deleted in new
chr19	7858407	7858506	ENSG00000142459.8|EVI5L|pc|chr19:7858407:7858506:+	0	+
#Deleted in new
chr19	7893595	7893859	ENSG00000171017.10|LRRC8E|pc|chr19:7893595:7893859:+	0	+
#Deleted in new
chr19	7893716	7893859	ENSG00000171017.10|LRRC8E|pc|chr19:7893716:7893859:+	0	+
#Partially deleted in new
chr19	7921014	7921119	ENSG00000104976.11|SNAPC2|pc|chr19:7921014:7921119:+	0	+
#Partially deleted in new
chr19	7931678	7931830	ENSG00000104980.7|TIMM44|pc|chr19:7931678:7931830:-	0	-
#Partially deleted in new
chr19	7972887	7973625	ENSG00000066044.14|ELAVL1|pc|chr19:7972887:7973625:-	0	-
#Partially deleted in new
chr19	798427	798545	ENSG00000011304.19|PTBP1|pc|chr19:798427:798545:+	0	+
#Deleted in new
chr19	8002051	8002203	ENSG00000066044.14|ELAVL1|pc|chr19:8002051:8002203:-	0	-
#Deleted in new
chr19	8015652	8016025	ENSG00000267939.1|AC008946.1|lncRNA|chr19:8015652:8016025:+	0	+
#Deleted in new
chr19	8062217	8062622	ENSG00000131142.13|CCL25|pc|chr19:8062217:8062622:+	0	+
#Deleted in new
chr19	8062217	8062646	ENSG00000131142.13|CCL25|pc|chr19:8062217:8062646:+	0	+
#Deleted in new
chr19	8062217	8062650	ENSG00000131142.13|CCL25|pc|chr19:8062217:8062650:+	0	+
#Partially deleted in new
chr19	8074765	8075190	ENSG00000142449.12|FBN3|pc|chr19:8074765:8075190:-	0	-
#Deleted in new
chr19	8095374	8095503	ENSG00000142449.12|FBN3|pc|chr19:8095374:8095503:-	0	-
#Deleted in new
chr19	8095378	8095503	ENSG00000142449.12|FBN3|pc|chr19:8095378:8095503:-	0	-
#Deleted in new
chr19	8126296	8126347	ENSG00000142449.12|FBN3|pc|chr19:8126296:8126347:-	0	-
#Deleted in new
chr19	8138140	8138323	ENSG00000142449.12|FBN3|pc|chr19:8138140:8138323:-	0	-
#Deleted in new
chr19	8148746	8148869	ENSG00000142449.12|FBN3|pc|chr19:8148746:8148869:-	0	-
#Deleted in new
chr19	8206735	8206799	ENSG00000090661.11|CERS4|pc|chr19:8206735:8206799:+	0	+
#Deleted in new
chr19	8209302	8209494	ENSG00000090661.11|CERS4|pc|chr19:8209302:8209494:+	0	+
#Deleted in new
chr19	8209312	8209494	ENSG00000090661.11|CERS4|pc|chr19:8209312:8209494:+	0	+
#Deleted in new
chr19	8209325	8209494	ENSG00000090661.11|CERS4|pc|chr19:8209325:8209494:+	0	+
#Deleted in new
chr19	8209339	8209494	ENSG00000090661.11|CERS4|pc|chr19:8209339:8209494:+	0	+
#Deleted in new
chr19	8209352	8209494	ENSG00000090661.11|CERS4|pc|chr19:8209352:8209494:+	0	+
#Deleted in new
chr19	8209355	8209494	ENSG00000090661.11|CERS4|pc|chr19:8209355:8209494:+	0	+
#Deleted in new
chr19	8209370	8209494	ENSG00000090661.11|CERS4|pc|chr19:8209370:8209494:+	0	+
#Deleted in new
chr19	8209375	8209494	ENSG00000090661.11|CERS4|pc|chr19:8209375:8209494:+	0	+
#Deleted in new
chr19	8209382	8209494	ENSG00000090661.11|CERS4|pc|chr19:8209382:8209494:+	0	+
#Deleted in new
chr19	8209430	8209494	ENSG00000090661.11|CERS4|pc|chr19:8209430:8209494:+	0	+
#Deleted in new
chr19	8209633	8209948	ENSG00000090661.11|CERS4|pc|chr19:8209633:8209948:+	0	+
#Deleted in new
chr19	8210682	8210862	ENSG00000090661.11|CERS4|pc|chr19:8210682:8210862:+	0	+
#Deleted in new
chr19	8210705	8210862	ENSG00000090661.11|CERS4|pc|chr19:8210705:8210862:+	0	+
#Deleted in new
chr19	8214365	8214481	ENSG00000090661.11|CERS4|pc|chr19:8214365:8214481:+	0	+
#Deleted in new
chr19	8214365	8214529	ENSG00000090661.11|CERS4|pc|chr19:8214365:8214529:+	0	+
#Deleted in new
chr19	8222152	8222209	ENSG00000271717.1|AC022146.2|lncRNA|chr19:8222152:8222209:-	0	-
#Deleted in new
chr19	8225026	8225089	ENSG00000090661.11|CERS4|pc|chr19:8225026:8225089:+	0	+
#Deleted in new
chr19	8239357	8239648	ENSG00000271717.1|AC022146.2|lncRNA|chr19:8239357:8239648:-	0	-
#Deleted in new
chr19	8240485	8240563	ENSG00000090661.11|CERS4|pc|chr19:8240485:8240563:+	0	+
#Deleted in new
chr19	8241340	8241370	ENSG00000090661.11|CERS4|pc|chr19:8241340:8241370:+	0	+
#Deleted in new
chr19	8241340	8241457	ENSG00000090661.11|CERS4|pc|chr19:8241340:8241457:+	0	+
#Deleted in new
chr1	98249445	98249546	ENSG00000226053.1|LINC01776|lncRNA|chr1:98249445:98249546:+	0	+
#Partially deleted in new
chr19	8250525	8251249	ENSG00000090661.11|CERS4|pc|chr19:8250525:8251249:+	0	+
#Deleted in new
chr19	825096	825197	ENSG00000172232.9|AZU1|pc|chr19:825096:825197:+	0	+
#Deleted in new
chr19	827835	827904	ENSG00000172232.9|AZU1|pc|chr19:827835:827904:+	0	+
#Deleted in new
chr19	828229	828386	ENSG00000172232.9|AZU1|pc|chr19:828229:828386:+	0	+
#Deleted in new
chr19	8305634	8305918	ENSG00000167775.10|CD320|pc|chr19:8305634:8305918:-	0	-
#Deleted in new
chr19	8308767	8308884	ENSG00000267855.5|NDUFA7|pc|chr19:8308767:8308884:-	0	-
#Deleted in new
chr19	8308772	8308884	ENSG00000267855.5|NDUFA7|pc|chr19:8308772:8308884:-	0	-
#Deleted in new
chr19	8308877	8308884	ENSG00000267855.5|NDUFA7|pc|chr19:8308877:8308884:-	0	-
#Deleted in new
chr19	8310504	8310772	ENSG00000267855.5|NDUFA7|pc|chr19:8310504:8310772:-	0	-
#Deleted in new
chr19	8319300	8319394	ENSG00000267855.5|NDUFA7|pc|chr19:8319300:8319394:-	0	-
#Deleted in new
chr19	8319300	8319560	ENSG00000267855.5|NDUFA7|pc|chr19:8319300:8319560:-	0	-
#Partially deleted in new
chr19	8322271	8323340	ENSG00000233927.4|RPS28|pc|chr19:8322271:8323340:+	0	+
#Partially deleted in new
chr19	8322583	8322922	ENSG00000186994.11|KANK3|pc|chr19:8322583:8322922:-	0	-
#Deleted in new
chr19	8323314	8323538	ENSG00000186994.11|KANK3|pc|chr19:8323314:8323538:-	0	-
#Deleted in new
chr19	8332744	8332989	ENSG00000186994.11|KANK3|pc|chr19:8332744:8332989:-	0	-
#Deleted in new
chr19	8363410	8363850	ENSG00000167772.11|ANGPTL4|pc|chr19:8363410:8363850:+	0	+
#Deleted in new
chr19	8363773	8363850	ENSG00000167772.11|ANGPTL4|pc|chr19:8363773:8363850:+	0	+
#Deleted in new
chr19	8363776	8363850	ENSG00000167772.11|ANGPTL4|pc|chr19:8363776:8363850:+	0	+
#Partially deleted in new
chr19	8374372	8374608	ENSG00000269386.5|RAB11B-AS1|lncRNA|chr19:8374372:8374608:-	0	-
#Partially deleted in new
chr19	8374378	8374608	ENSG00000269386.5|RAB11B-AS1|lncRNA|chr19:8374378:8374608:-	0	-
#Partially deleted in new
chr19	8374420	8374608	ENSG00000269386.5|RAB11B-AS1|lncRNA|chr19:8374420:8374608:-	0	-
#Deleted in new
chr19	8376904	8377067	ENSG00000269386.5|RAB11B-AS1|lncRNA|chr19:8376904:8377067:-	0	-
#Deleted in new
chr19	8376961	8377067	ENSG00000269386.5|RAB11B-AS1|lncRNA|chr19:8376961:8377067:-	0	-
#Deleted in new
chr19	8377747	8377827	ENSG00000269386.5|RAB11B-AS1|lncRNA|chr19:8377747:8377827:-	0	-
#Partially deleted in new
chr19	8402484	8402924	ENSG00000185236.11|RAB11B|pc|chr19:8402484:8402924:+	0	+
#Partially deleted in new
chr19	8418404	8418807	ENSG00000099785.10|MARCH2|pc|chr19:8418404:8418807:+	0	+
#Deleted in new
chr19	8418536	8418807	ENSG00000099785.10|MARCH2|pc|chr19:8418536:8418807:+	0	+
#Deleted in new
chr19	8418741	8418807	ENSG00000099785.10|MARCH2|pc|chr19:8418741:8418807:+	0	+
#Deleted in new
chr19	8427701	8427827	ENSG00000268931.1|AC136469.1|lncRNA|chr19:8427701:8427827:-	0	-
#Deleted in new
chr19	8481468	8481556	ENSG00000099783.11|HNRNPM|pc|chr19:8481468:8481556:+	0	+
#Partially deleted in new
chr19	8488008	8488066	ENSG00000099783.11|HNRNPM|pc|chr19:8488008:8488066:+	0	+
#Partially deleted in new
chr19	8491099	8492023	ENSG00000133246.11|PRAM1|pc|chr19:8491099:8492023:-	0	-
#Partially deleted in new
chr19	8509677	8510764	ENSG00000133250.13|ZNF414|pc|chr19:8509677:8510764:-	0	-
#Deleted in new
chr19	851013	851034	ENSG00000197561.6|ELANE|pc|chr19:851013:851034:+	0	+
#Partially deleted in new
chr19	8529808	8529997	ENSG00000142347.16|MYO1F|pc|chr19:8529808:8529997:-	0	-
#Deleted in new
chr19	8540318	8540463	ENSG00000142347.16|MYO1F|pc|chr19:8540318:8540463:-	0	-
#Deleted in new
chr19	8549505	8549582	ENSG00000268618.1|AC092316.1|lncRNA|chr19:8549505:8549582:+	0	+
#Deleted in new
chr19	8549594	8549600	ENSG00000142347.16|MYO1F|pc|chr19:8549594:8549600:-	0	-
#Partially deleted in new
chr19	8549919	8550139	ENSG00000268618.1|AC092316.1|lncRNA|chr19:8549919:8550139:+	0	+
#Partially deleted in new
chr19	8575078	8576170	ENSG00000279396.1|AC130469.2|lncRNA|chr19:8575078:8576170:-	0	-
#Deleted in new
chr19	8581159	8581369	ENSG00000267986.1|AC130469.1|lncRNA|chr19:8581159:8581369:+	0	+
#Deleted in new
chr19	8582537	8582715	ENSG00000267986.1|AC130469.1|lncRNA|chr19:8582537:8582715:+	0	+
#Deleted in new
chr19	8608133	8608248	ENSG00000142303.13|ADAMTS10|pc|chr19:8608133:8608248:-	0	-
#Deleted in new
chr19	8608133	8608265	ENSG00000142303.13|ADAMTS10|pc|chr19:8608133:8608265:-	0	-
#Deleted in new
chr19	8630670	8630744	ENSG00000268480.1|LINC01862|lncRNA|chr19:8630670:8630744:+	0	+
#Deleted in new
chr19	8632475	8632625	ENSG00000268480.1|LINC01862|lncRNA|chr19:8632475:8632625:+	0	+
#Deleted in new
chr19	8635649	8635746	ENSG00000268480.1|LINC01862|lncRNA|chr19:8635649:8635746:+	0	+
#Deleted in new
chr19	8638492	8638649	ENSG00000268480.1|LINC01862|lncRNA|chr19:8638492:8638649:+	0	+
#Partially deleted in new
chr19	867629	868499	ENSG00000175221.14|MED16|pc|chr19:867629:868499:-	0	-
#Deleted in new
chr1	98677300	98677331	ENSG00000162627.16|SNX7|pc|chr1:98677300:98677331:+	0	+
#Partially deleted in new
chr19	867852	868499	ENSG00000175221.14|MED16|pc|chr19:867852:868499:-	0	-
#Deleted in new
chr19	867962	868251	ENSG00000175221.14|MED16|pc|chr19:867962:868251:-	0	-
#Partially deleted in new
chr19	867962	868499	ENSG00000175221.14|MED16|pc|chr19:867962:868499:-	0	-
#Deleted in new
chr19	867963	868251	ENSG00000175221.14|MED16|pc|chr19:867963:868251:-	0	-
#Partially deleted in new
chr19	867963	868499	ENSG00000175221.14|MED16|pc|chr19:867963:868499:-	0	-
#Partially deleted in new
chr19	867971	868415	ENSG00000175221.14|MED16|pc|chr19:867971:868415:-	0	-
#Partially deleted in new
chr19	867971	868496	ENSG00000175221.14|MED16|pc|chr19:867971:868496:-	0	-
#Deleted in new
chr19	871605	871662	ENSG00000175221.14|MED16|pc|chr19:871605:871662:-	0	-
#Deleted in new
chr19	8721633	8722042	ENSG00000181733.3|OR2Z1|pc|chr19:8721633:8722042:+	0	+
#Deleted in new
chr19	8723105	8723150	ENSG00000181733.3|OR2Z1|pc|chr19:8723105:8723150:+	0	+
#Deleted in new
chr19	8823758	8824110	ENSG00000269300.1|AC008734.1|lncRNA|chr19:8823758:8824110:+	0	+
#Deleted in new
chr19	8824081	8824417	ENSG00000167785.8|ZNF558|pc|chr19:8824081:8824417:-	0	-
#Deleted in new
chr19	8824180	8824417	ENSG00000167785.8|ZNF558|pc|chr19:8824180:8824417:-	0	-
#Deleted in new
chr19	8824279	8824417	ENSG00000167785.8|ZNF558|pc|chr19:8824279:8824417:-	0	-
#Deleted in new
chr19	8825001	8825099	ENSG00000167785.8|ZNF558|pc|chr19:8825001:8825099:-	0	-
#Deleted in new
chr19	8825001	8825108	ENSG00000167785.8|ZNF558|pc|chr19:8825001:8825108:-	0	-
#Partially deleted in new
chr19	8830769	8830891	ENSG00000167785.8|ZNF558|pc|chr19:8830769:8830891:-	0	-
#Partially deleted in new
chr19	8833064	8833541	ENSG00000269400.1|AC008734.2|lncRNA|chr19:8833064:8833541:+	0	+
#Deleted in new
chr1	9883704	9883738	ENSG00000178585.14|CTNNBIP1|pc|chr1:9883704:9883738:-	0	-
#Deleted in new
chr19	8882330	8882366	ENSG00000181143.15|MUC16|pc|chr19:8882330:8882366:-	0	-
#Deleted in new
chr19	8884958	8885024	ENSG00000181143.15|MUC16|pc|chr19:8884958:8885024:-	0	-
#Deleted in new
chr19	8885277	8885313	ENSG00000181143.15|MUC16|pc|chr19:8885277:8885313:-	0	-
#Deleted in new
chr19	8888021	8888087	ENSG00000181143.15|MUC16|pc|chr19:8888021:8888087:-	0	-
#Deleted in new
chr19	8888348	8888384	ENSG00000181143.15|MUC16|pc|chr19:8888348:8888384:-	0	-
#Deleted in new
chr19	8891154	8891220	ENSG00000181143.15|MUC16|pc|chr19:8891154:8891220:-	0	-
#Deleted in new
chr19	8891476	8891512	ENSG00000181143.15|MUC16|pc|chr19:8891476:8891512:-	0	-
#Deleted in new
chr19	8894192	8894258	ENSG00000181143.15|MUC16|pc|chr19:8894192:8894258:-	0	-
#Deleted in new
chr19	8894517	8894553	ENSG00000181143.15|MUC16|pc|chr19:8894517:8894553:-	0	-
#Deleted in new
chr19	8896810	8896876	ENSG00000181143.15|MUC16|pc|chr19:8896810:8896876:-	0	-
#Deleted in new
chr19	8897132	8897168	ENSG00000181143.15|MUC16|pc|chr19:8897132:8897168:-	0	-
#Deleted in new
chr19	8899971	8900037	ENSG00000181143.15|MUC16|pc|chr19:8899971:8900037:-	0	-
#Deleted in new
chr19	8900294	8900330	ENSG00000181143.15|MUC16|pc|chr19:8900294:8900330:-	0	-
#Deleted in new
chr19	8903168	8903234	ENSG00000181143.15|MUC16|pc|chr19:8903168:8903234:-	0	-
#Deleted in new
chr19	8903492	8903528	ENSG00000181143.15|MUC16|pc|chr19:8903492:8903528:-	0	-
#Deleted in new
chr19	8905983	8906046	ENSG00000181143.15|MUC16|pc|chr19:8905983:8906046:-	0	-
#Deleted in new
chr19	8906304	8906340	ENSG00000181143.15|MUC16|pc|chr19:8906304:8906340:-	0	-
#Duplicated in new
chr19	8906669	8906842	ENSG00000181143.15|MUC16|pc|chr19:8906669:8906842:-	0	-
#Deleted in new
chr19	8908598	8908664	ENSG00000181143.15|MUC16|pc|chr19:8908598:8908664:-	0	-
#Deleted in new
chr19	8908923	8908959	ENSG00000181143.15|MUC16|pc|chr19:8908923:8908959:-	0	-
#Deleted in new
chr19	8913457	8913523	ENSG00000181143.15|MUC16|pc|chr19:8913457:8913523:-	0	-
#Deleted in new
chr19	8913784	8913820	ENSG00000181143.15|MUC16|pc|chr19:8913784:8913820:-	0	-
#Deleted in new
chr19	8916539	8916605	ENSG00000181143.15|MUC16|pc|chr19:8916539:8916605:-	0	-
#Deleted in new
chr19	8916863	8916899	ENSG00000181143.15|MUC16|pc|chr19:8916863:8916899:-	0	-
#Deleted in new
chr19	8917547	8917720	ENSG00000181143.15|MUC16|pc|chr19:8917547:8917720:-	0	-
#Partially deleted in new
chr19	892346	892815	ENSG00000175221.14|MED16|pc|chr19:892346:892815:-	0	-
#Deleted in new
chr19	8932749	8932785	ENSG00000181143.15|MUC16|pc|chr19:8932749:8932785:-	0	-
#Split in new
chr19	8945496	8967189	ENSG00000181143.15|MUC16|pc|chr19:8945496:8967189:-	0	-
#Deleted in new
chr19	8969774	8969879	ENSG00000181143.15|MUC16|pc|chr19:8969774:8969879:-	0	-
#Deleted in new
chr19	8971663	8981342	ENSG00000181143.15|MUC16|pc|chr19:8971663:8981342:-	0	-
#Partially deleted in new
chr19	902241	902410	ENSG00000198858.9|R3HDM4|pc|chr19:902241:902410:-	0	-
#Deleted in new
chr19	902518	902627	ENSG00000198858.9|R3HDM4|pc|chr19:902518:902627:-	0	-
#Deleted in new
chr19	902560	902627	ENSG00000198858.9|R3HDM4|pc|chr19:902560:902627:-	0	-
#Deleted in new
chr19	9140379	9140592	ENSG00000130803.14|ZNF317|pc|chr19:9140379:9140592:+	0	+
#Deleted in new
chr19	9140396	9140592	ENSG00000130803.14|ZNF317|pc|chr19:9140396:9140592:+	0	+
#Deleted in new
chr19	9140414	9140592	ENSG00000130803.14|ZNF317|pc|chr19:9140414:9140592:+	0	+
#Deleted in new
chr19	9140428	9140592	ENSG00000130803.14|ZNF317|pc|chr19:9140428:9140592:+	0	+
#Deleted in new
chr1	99146773	99148852	ENSG00000232825.1|AL445433.2|lncRNA|chr1:99146773:99148852:+	0	+
#Deleted in new
chr19	9178978	9179123	ENSG00000188000.4|OR7D2|pc|chr19:9178978:9179123:+	0	+
#Deleted in new
chr19	9180697	9180788	ENSG00000188000.4|OR7D2|pc|chr19:9180697:9180788:+	0	+
#Split in new
chr19	9185593	9188817	ENSG00000188000.4|OR7D2|pc|chr19:9185593:9188817:+	0	+
#Split in new
chr19	9210275	9214850	ENSG00000174667.4|OR7D4|pc|chr19:9210275:9214850:-	0	-
#Split in new
chr19	9210275	9214853	ENSG00000174667.4|OR7D4|pc|chr19:9210275:9214853:-	0	-
#Partially deleted in new
chr19	928719	928817	ENSG00000267159.2|AC005379.1|lncRNA|chr19:928719:928817:-	0	-
#Deleted in new
chr19	9291514	9291753	ENSG00000267510.1|AC011451.1|lncRNA|chr19:9291514:9291753:+	0	+
#Deleted in new
chr19	9294316	9294482	ENSG00000267510.1|AC011451.1|lncRNA|chr19:9294316:9294482:+	0	+
#Deleted in new
chr19	9305071	9305119	ENSG00000196110.7|ZNF699|pc|chr19:9305071:9305119:-	0	-
#Deleted in new
chr19	9305071	9305124	ENSG00000196110.7|ZNF699|pc|chr19:9305071:9305124:-	0	-
#Deleted in new
chr19	9309349	9309573	ENSG00000196110.7|ZNF699|pc|chr19:9309349:9309573:-	0	-
#Deleted in new
chr19	9309349	9309838	ENSG00000196110.7|ZNF699|pc|chr19:9309349:9309838:-	0	-
#Deleted in new
chr19	9323771	9324228	ENSG00000188321.13|ZNF559|pc|chr19:9323771:9324228:+	0	+
#Deleted in new
chr19	9324173	9324228	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324173:9324228:+	0	+
#Deleted in new
chr19	9324176	9324228	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324176:9324228:+	0	+
#Deleted in new
chr19	9324178	9324228	ENSG00000188321.13|ZNF559|pc|chr19:9324178:9324228:+	0	+
#Deleted in new
chr19	9324178	9324228	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324178:9324228:+	0	+
#Deleted in new
chr19	9324196	9324228	ENSG00000188321.13|ZNF559|pc|chr19:9324196:9324228:+	0	+
#Deleted in new
chr19	9324196	9324228	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324196:9324228:+	0	+
#Deleted in new
chr19	9324197	9324228	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324197:9324228:+	0	+
#Deleted in new
chr19	9324201	9324228	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324201:9324228:+	0	+
#Deleted in new
chr19	9324221	9324267	ENSG00000188321.13|ZNF559|pc|chr19:9324221:9324267:+	0	+
#Deleted in new
chr19	9324223	9324228	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324223:9324228:+	0	+
#Deleted in new
chr19	9324225	9324404	ENSG00000188321.13|ZNF559|pc|chr19:9324225:9324404:+	0	+
#Deleted in new
chr19	9324230	9324404	ENSG00000188321.13|ZNF559|pc|chr19:9324230:9324404:+	0	+
#Deleted in new
chr19	9324251	9324780	ENSG00000188321.13|ZNF559|pc|chr19:9324251:9324780:+	0	+
#Deleted in new
chr19	9324290	9324404	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324290:9324404:+	0	+
#Deleted in new
chr19	9324294	9324404	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324294:9324404:+	0	+
#Deleted in new
chr19	9324306	9324404	ENSG00000188321.13|ZNF559|pc|chr19:9324306:9324404:+	0	+
#Deleted in new
chr19	9324340	9324404	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324340:9324404:+	0	+
#Deleted in new
chr19	9324694	9324780	ENSG00000188321.13|ZNF559|pc|chr19:9324694:9324780:+	0	+
#Deleted in new
chr19	9324694	9324780	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324694:9324780:+	0	+
#Deleted in new
chr19	9324711	9324780	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9324711:9324780:+	0	+
#Deleted in new
chr19	9330114	9330189	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9330114:9330189:+	0	+
#Deleted in new
chr19	9333014	9333113	ENSG00000188321.13|ZNF559|pc|chr19:9333014:9333113:+	0	+
#Deleted in new
chr19	9333014	9333113	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9333014:9333113:+	0	+
#Duplicated in new
chr19	9341616	9343843	ENSG00000188321.13|ZNF559|pc|chr19:9341616:9343843:+	0	+
#Duplicated in new
chr19	9341694	9343843	ENSG00000188321.13|ZNF559|pc|chr19:9341694:9343843:+	0	+
#Deleted in new
chr19	9350803	9351162	ENSG00000188321.13|ZNF559|pc|chr19:9350803:9351162:+	0	+
#Deleted in new
chr19	9355656	9355721	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9355656:9355721:+	0	+
#Deleted in new
chr19	9357827	9357904	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9357827:9357904:+	0	+
#Deleted in new
chr19	9363019	9363084	ENSG00000188629.11|ZNF177|pc|chr19:9363019:9363084:+	0	+
#Deleted in new
chr19	9363030	9363291	ENSG00000188629.11|ZNF177|pc|chr19:9363030:9363291:+	0	+
#Deleted in new
chr19	9364861	9364909	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9364861:9364909:+	0	+
#Deleted in new
chr19	9364861	9364914	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9364861:9364914:+	0	+
#Deleted in new
chr19	9364861	9364930	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9364861:9364930:+	0	+
#Deleted in new
chr19	9364861	9364948	ENSG00000188629.11|ZNF177|pc|chr19:9364861:9364948:+	0	+
#Deleted in new
chr19	9364861	9364948	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9364861:9364948:+	0	+
#Deleted in new
chr19	9371609	9371752	ENSG00000188629.11|ZNF177|pc|chr19:9371609:9371752:+	0	+
#Deleted in new
chr19	9371609	9371752	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9371609:9371752:+	0	+
#Deleted in new
chr19	9376315	9376423	ENSG00000188629.11|ZNF177|pc|chr19:9376315:9376423:+	0	+
#Deleted in new
chr19	9376315	9376423	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9376315:9376423:+	0	+
#Deleted in new
chr19	9376410	9376423	ENSG00000188629.11|ZNF177|pc|chr19:9376410:9376423:+	0	+
#Deleted in new
chr19	9378255	9378344	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9378255:9378344:+	0	+
#Deleted in new
chr19	9378258	9378311	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9378258:9378311:+	0	+
#Deleted in new
chr19	9378258	9378344	ENSG00000188629.11|ZNF177|pc|chr19:9378258:9378344:+	0	+
#Deleted in new
chr19	9378258	9378344	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9378258:9378344:+	0	+
#Deleted in new
chr19	9378258	9378618	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9378258:9378618:+	0	+
#Deleted in new
chr19	9378268	9378344	ENSG00000188629.11|ZNF177|pc|chr19:9378268:9378344:+	0	+
#Deleted in new
chr19	9378961	9378979	ENSG00000188629.11|ZNF177|pc|chr19:9378961:9378979:+	0	+
#Deleted in new
chr19	9378961	9379053	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9378961:9379053:+	0	+
#Deleted in new
chr19	9378961	9379088	ENSG00000188629.11|ZNF177|pc|chr19:9378961:9379088:+	0	+
#Deleted in new
chr19	9378961	9379088	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9378961:9379088:+	0	+
#Deleted in new
chr19	9378961	9379175	ENSG00000270011.6|ZNF559-ZNF177|pc|chr19:9378961:9379175:+	0	+
#Deleted in new
chr19	9382384	9382617	ENSG00000188629.11|ZNF177|pc|chr19:9382384:9382617:+	0	+
#Deleted in new
chr19	9383580	9383740	ENSG00000283108.1|AC011451.3|lncRNA|chr19:9383580:9383740:-	0	-
#Deleted in new
chr19	9384906	9385475	ENSG00000283108.1|AC011451.3|lncRNA|chr19:9384906:9385475:-	0	-
#Deleted in new
chr19	9385259	9385475	ENSG00000283108.1|AC011451.3|lncRNA|chr19:9385259:9385475:-	0	-
#Deleted in new
chr19	9406849	9407024	ENSG00000283108.1|AC011451.3|lncRNA|chr19:9406849:9407024:-	0	-
#Deleted in new
chr19	9406849	9407055	ENSG00000283108.1|AC011451.3|lncRNA|chr19:9406849:9407055:-	0	-
#Deleted in new
chr19	9433667	9433786	ENSG00000174652.17|ZNF266|pc|chr19:9433667:9433786:-	0	-
#Deleted in new
chr19	9433773	9433786	ENSG00000174652.17|ZNF266|pc|chr19:9433773:9433786:-	0	-
#Deleted in new
chr19	9434064	9434235	ENSG00000174652.17|ZNF266|pc|chr19:9434064:9434235:-	0	-
#Deleted in new
chr19	9434074	9434235	ENSG00000174652.17|ZNF266|pc|chr19:9434074:9434235:-	0	-
#Deleted in new
chr1	99487744	99487804	ENSG00000224445.3|LINC01708|lncRNA|chr1:99487744:99487804:-	0	-
#Deleted in new
chr19	9498127	9498215	ENSG00000198028.3|ZNF560|pc|chr19:9498127:9498215:-	0	-
#Deleted in new
chr19	9498537	9498607	ENSG00000198028.3|ZNF560|pc|chr19:9498537:9498607:-	0	-
#Partially deleted in new
chr19	9498677	9498793	ENSG00000267273.1|AC008567.2|lncRNA|chr19:9498677:9498793:+	0	+
#Deleted in new
chr19	9509539	9510079	ENSG00000267273.1|AC008567.2|lncRNA|chr19:9509539:9510079:+	0	+
#Split in new
chr19	9523223	9529636	ENSG00000130818.11|ZNF426|pc|chr19:9523223:9529636:-	0	-
#Deleted in new
chr19	9538258	9538345	ENSG00000130818.11|ZNF426|pc|chr19:9538258:9538345:-	0	-
#Deleted in new
chr19	9538258	9538388	ENSG00000130818.11|ZNF426|pc|chr19:9538258:9538388:-	0	-
#Deleted in new
chr19	9538258	9538590	ENSG00000130818.11|ZNF426|pc|chr19:9538258:9538590:-	0	-
#Deleted in new
chr19	9538574	9538627	ENSG00000130818.11|ZNF426|pc|chr19:9538574:9538627:-	0	-
#Deleted in new
chr19	9538574	9538645	ENSG00000130818.11|ZNF426|pc|chr19:9538574:9538645:-	0	-
#Deleted in new
chr19	9538732	9538998	ENSG00000278611.1|AC008567.3|lncRNA|chr19:9538732:9538998:+	0	+
#Deleted in new
chr19	9538738	9538998	ENSG00000278611.1|AC008567.3|lncRNA|chr19:9538738:9538998:+	0	+
#Deleted in new
chr19	9539135	9539734	ENSG00000278611.1|AC008567.3|lncRNA|chr19:9539135:9539734:+	0	+
#Deleted in new
chr19	9539405	9539734	ENSG00000278611.1|AC008567.3|lncRNA|chr19:9539405:9539734:+	0	+
#Split in new
chr19	9560352	9567109	ENSG00000197961.11|ZNF121|pc|chr19:9560352:9567109:-	0	-
#Deleted in new
chr19	9567647	9567705	ENSG00000197961.11|ZNF121|pc|chr19:9567647:9567705:-	0	-
#Deleted in new
chr19	9567647	9567743	ENSG00000197961.11|ZNF121|pc|chr19:9567647:9567743:-	0	-
#Deleted in new
chr19	9568094	9568175	ENSG00000197961.11|ZNF121|pc|chr19:9568094:9568175:-	0	-
#Deleted in new
chr19	958041	958149	ENSG00000275162.1|AC005391.1|lncRNA|chr19:958041:958149:+	0	+
#Deleted in new
chr19	9584185	9584348	ENSG00000197961.11|ZNF121|pc|chr19:9584185:9584348:-	0	-
#Deleted in new
chr19	9584460	9584497	ENSG00000197961.11|ZNF121|pc|chr19:9584460:9584497:-	0	-
#Deleted in new
chr19	9584460	9584533	ENSG00000197961.11|ZNF121|pc|chr19:9584460:9584533:-	0	-
#Deleted in new
chr1	995965	998051	ENSG00000272512.1|AL645608.8|lncRNA|chr1:995965:998051:-	0	-
#Deleted in new
chr1	99600311	99600425	ENSG00000224445.3|LINC01708|lncRNA|chr1:99600311:99600425:-	0	-
#Deleted in new
chr19	9604679	9604932	ENSG00000171469.10|ZNF561|pc|chr19:9604679:9604932:-	0	-
#Deleted in new
chr19	961761	961940	ENSG00000116017.10|ARID3A|pc|chr19:961761:961940:+	0	+
#Deleted in new
chr19	9620915	9620963	ENSG00000171469.10|ZNF561|pc|chr19:9620915:9620963:-	0	-
#Deleted in new
chr19	9620915	9621049	ENSG00000171469.10|ZNF561|pc|chr19:9620915:9621049:-	0	-
#Deleted in new
chr19	9620915	9621231	ENSG00000171469.10|ZNF561|pc|chr19:9620915:9621231:-	0	-
#Deleted in new
chr19	9621161	9621188	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621188:-	0	-
#Deleted in new
chr19	9621161	9621195	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621195:-	0	-
#Deleted in new
chr19	9621161	9621205	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621205:-	0	-
#Deleted in new
chr19	9621161	9621208	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621208:-	0	-
#Deleted in new
chr19	9621161	9621219	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621219:-	0	-
#Deleted in new
chr19	9621161	9621222	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621222:-	0	-
#Deleted in new
chr19	9621161	9621230	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621230:-	0	-
#Deleted in new
chr19	9621161	9621231	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621231:-	0	-
#Deleted in new
chr19	9621161	9621232	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621232:-	0	-
#Deleted in new
chr19	9621161	9621234	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621234:-	0	-
#Deleted in new
chr19	9621161	9621236	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621236:-	0	-
#Deleted in new
chr19	9621161	9621399	ENSG00000171469.10|ZNF561|pc|chr19:9621161:9621399:-	0	-
#Deleted in new
chr19	9621290	9621350	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9621290:9621350:+	0	+
#Deleted in new
chr19	9621502	9621645	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9621502:9621645:+	0	+
#Deleted in new
chr19	9621504	9621645	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9621504:9621645:+	0	+
#Deleted in new
chr19	9621516	9621645	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9621516:9621645:+	0	+
#Deleted in new
chr19	9621518	9621645	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9621518:9621645:+	0	+
#Deleted in new
chr19	9621546	9621645	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9621546:9621645:+	0	+
#Deleted in new
chr19	9621552	9621645	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9621552:9621645:+	0	+
#Deleted in new
chr19	9626783	9626860	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9626783:9626860:+	0	+
#Deleted in new
chr19	9627715	9627806	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9627715:9627806:+	0	+
#Deleted in new
chr19	9632227	9632372	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9632227:9632372:+	0	+
#Deleted in new
chr19	9632227	9632417	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9632227:9632417:+	0	+
#Deleted in new
chr19	9632227	9632651	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9632227:9632651:+	0	+
#Deleted in new
chr19	9633459	9633528	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9633459:9633528:+	0	+
#Deleted in new
chr19	9633459	9633614	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9633459:9633614:+	0	+
#Deleted in new
chr19	9633459	9633885	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9633459:9633885:+	0	+
#Deleted in new
chr19	9633459	9634721	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9633459:9634721:+	0	+
#Deleted in new
chr19	9633459	9634862	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9633459:9634862:+	0	+
#Partially deleted in new
chr19	9641807	9653881	ENSG00000171466.9|ZNF562|pc|chr19:9641807:9653881:-	0	-
#Partially deleted in new
chr19	9643435	9645896	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9643435:9645896:+	0	+
#Deleted in new
chr19	9645073	9645489	ENSG00000267106.5|ZNF561-AS1|lncRNA|chr19:9645073:9645489:+	0	+
#Deleted in new
chr19	9674631	9675048	ENSG00000171466.9|ZNF562|pc|chr19:9674631:9675048:-	0	-
#Deleted in new
chr19	9675014	9675044	ENSG00000171466.9|ZNF562|pc|chr19:9675014:9675044:-	0	-
#Deleted in new
chr19	9675014	9675052	ENSG00000171466.9|ZNF562|pc|chr19:9675014:9675052:-	0	-
#Deleted in new
chr19	9675014	9675058	ENSG00000171466.9|ZNF562|pc|chr19:9675014:9675058:-	0	-
#Deleted in new
chr19	9675014	9675080	ENSG00000171466.9|ZNF562|pc|chr19:9675014:9675080:-	0	-
#Deleted in new
chr19	9675014	9675082	ENSG00000171466.9|ZNF562|pc|chr19:9675014:9675082:-	0	-
#Deleted in new
chr19	9675014	9675086	ENSG00000171466.9|ZNF562|pc|chr19:9675014:9675086:-	0	-
#Partially deleted in new
chr19	9721902	9722410	ENSG00000277587.1|AC008759.3|lncRNA|chr19:9721902:9722410:+	0	+
#Deleted in new
chr19	9730852	9731376	ENSG00000267612.1|AC008759.2|lncRNA|chr19:9730852:9731376:+	0	+
#Deleted in new
chr19	9731867	9731943	ENSG00000267612.1|AC008759.2|lncRNA|chr19:9731867:9731943:+	0	+
#Partially deleted in new
chr1	99747594	99748768	ENSG00000156869.12|FRRS1|pc|chr1:99747594:99748768:-	0	-
#Deleted in new
chr19	9751992	9752054	ENSG00000196605.7|ZNF846|pc|chr19:9751992:9752054:-	0	-
#Deleted in new
chr19	9752139	9752440	ENSG00000196605.7|ZNF846|pc|chr19:9752139:9752440:-	0	-
#Deleted in new
chr19	9752384	9752440	ENSG00000196605.7|ZNF846|pc|chr19:9752384:9752440:-	0	-
#Deleted in new
chr19	9752389	9752440	ENSG00000196605.7|ZNF846|pc|chr19:9752389:9752440:-	0	-
#Deleted in new
chr19	9755516	9755634	ENSG00000196605.7|ZNF846|pc|chr19:9755516:9755634:-	0	-
#Deleted in new
chr19	9762081	9762165	ENSG00000196605.7|ZNF846|pc|chr19:9762081:9762165:-	0	-
#Deleted in new
chr19	9762081	9762168	ENSG00000196605.7|ZNF846|pc|chr19:9762081:9762168:-	0	-
#Deleted in new
chr19	9762081	9762463	ENSG00000196605.7|ZNF846|pc|chr19:9762081:9762463:-	0	-
#Deleted in new
chr19	9762099	9762168	ENSG00000196605.7|ZNF846|pc|chr19:9762099:9762168:-	0	-
#Deleted in new
chr19	9762387	9762473	ENSG00000196605.7|ZNF846|pc|chr19:9762387:9762473:-	0	-
#Deleted in new
chr19	9764809	9765035	ENSG00000196605.7|ZNF846|pc|chr19:9764809:9765035:-	0	-
#Deleted in new
chr19	9764935	9765035	ENSG00000196605.7|ZNF846|pc|chr19:9764935:9765035:-	0	-
#Deleted in new
chr1	99765296	99765793	ENSG00000156869.12|FRRS1|pc|chr1:99765296:99765793:-	0	-
#Deleted in new
chr19	9768288	9768305	ENSG00000196605.7|ZNF846|pc|chr19:9768288:9768305:-	0	-
#Deleted in new
chr19	9768288	9768617	ENSG00000196605.7|ZNF846|pc|chr19:9768288:9768617:-	0	-
#Deleted in new
chr19	9768288	9768732	ENSG00000196605.7|ZNF846|pc|chr19:9768288:9768732:-	0	-
#Deleted in new
chr19	9768288	9768734	ENSG00000196605.7|ZNF846|pc|chr19:9768288:9768734:-	0	-
#Partially deleted in new
chr19	9785937	9786023	ENSG00000196605.7|ZNF846|pc|chr19:9785937:9786023:-	0	-
#Partially deleted in new
chr19	9785937	9786051	ENSG00000196605.7|ZNF846|pc|chr19:9785937:9786051:-	0	-
#Partially deleted in new
chr19	9785937	9786089	ENSG00000196605.7|ZNF846|pc|chr19:9785937:9786089:-	0	-
#Deleted in new
chr19	9787407	9787810	ENSG00000196605.7|ZNF846|pc|chr19:9787407:9787810:-	0	-
#Deleted in new
chr19	9792933	9793097	ENSG00000196605.7|ZNF846|pc|chr19:9792933:9793097:-	0	-
#Deleted in new
chr19	9792933	9793180	ENSG00000196605.7|ZNF846|pc|chr19:9792933:9793180:-	0	-
#Deleted in new
chr19	9793620	9793648	ENSG00000266950.1|AC008752.1|lncRNA|chr19:9793620:9793648:+	0	+
#Deleted in new
chr19	9801921	9802301	ENSG00000266950.1|AC008752.1|lncRNA|chr19:9801921:9802301:+	0	+
#Partially deleted in new
chr1	9981255	9981766	ENSG00000173614.13|NMNAT1|pc|chr1:9981255:9981766:+	0	+
#Deleted in new
chr19	9813230	9813274	ENSG00000127452.8|FBXL12|pc|chr19:9813230:9813274:-	0	-
#Deleted in new
chr19	9813230	9813413	ENSG00000127452.8|FBXL12|pc|chr19:9813230:9813413:-	0	-
#Deleted in new
chr19	9814137	9814339	ENSG00000127452.8|FBXL12|pc|chr19:9814137:9814339:-	0	-
#Deleted in new
chr19	9814137	9814342	ENSG00000127452.8|FBXL12|pc|chr19:9814137:9814342:-	0	-
#Deleted in new
chr19	9814571	9814669	ENSG00000127452.8|FBXL12|pc|chr19:9814571:9814669:-	0	-
#Partially deleted in new
chr19	9818153	9818617	ENSG00000127452.8|FBXL12|pc|chr19:9818153:9818617:-	0	-
#Partially deleted in new
chr1	9982300	9985498	ENSG00000173614.13|NMNAT1|pc|chr1:9982300:9985498:+	0	+
#Deleted in new
chr19	9827790	9827816	ENSG00000127452.8|FBXL12|pc|chr19:9827790:9827816:-	0	-
#Deleted in new
chr1	9983003	9983669	ENSG00000173614.13|NMNAT1|pc|chr1:9983003:9983669:+	0	+
#Deleted in new
chr1	9983140	9983290	ENSG00000241326.1|AL603962.1|lncRNA|chr1:9983140:9983290:+	0	+
#Deleted in new
chr19	9838011	9838075	ENSG00000127445.13|PIN1|pc|chr19:9838011:9838075:+	0	+
#Deleted in new
chr19	9838016	9838098	ENSG00000127445.13|PIN1|pc|chr19:9838016:9838098:+	0	+
#Deleted in new
chr1	9984282	9984568	ENSG00000241326.1|AL603962.1|lncRNA|chr1:9984282:9984568:+	0	+
#Partially deleted in new
chr1	9985135	9985501	ENSG00000173614.13|NMNAT1|pc|chr1:9985135:9985501:+	0	+
#Deleted in new
chr1	99852560	99852703	ENSG00000162688.16|AGL|pc|chr1:99852560:99852703:+	0	+
#Deleted in new
chr1	99852669	99852703	ENSG00000162688.16|AGL|pc|chr1:99852669:99852703:+	0	+
#Deleted in new
chr19	9858096	9858146	ENSG00000105088.8|OLFM2|pc|chr19:9858096:9858146:-	0	-
#Deleted in new
chr19	9858096	9858168	ENSG00000105088.8|OLFM2|pc|chr19:9858096:9858168:-	0	-
#Deleted in new
chr1	99968382	99968477	ENSG00000228084.1|AC118553.1|lncRNA|chr1:99968382:99968477:-	0	-
#Deleted in new
chr1	99974970	99975069	ENSG00000117620.14|SLC35A3|pc|chr1:99974970:99975069:+	0	+
#Deleted in new
chr1	99974970	99975069	ENSG00000283761.1|AC118553.2|pc|chr1:99974970:99975069:+	0	+
#Deleted in new
chr19	998312	998438	ENSG00000065268.10|WDR18|pc|chr19:998312:998438:+	0	+
#Deleted in new
chr19	999795	1000167	ENSG00000266990.1|AC004528.1|lncRNA|chr19:999795:1000167:-	0	-
#Deleted in new
chr20	10021977	10022462	ENSG00000227906.7|SNAP25-AS1|lncRNA|chr20:10021977:10022462:-	0	-
#Deleted in new
chr20	10025615	10026166	ENSG00000227906.7|SNAP25-AS1|lncRNA|chr20:10025615:10026166:-	0	-
#Deleted in new
chr20	10026074	10026648	ENSG00000227906.7|SNAP25-AS1|lncRNA|chr20:10026074:10026648:-	0	-
#Deleted in new
chr20	10026543	10026648	ENSG00000227906.7|SNAP25-AS1|lncRNA|chr20:10026543:10026648:-	0	-
#Deleted in new
chr20	10026543	10026651	ENSG00000227906.7|SNAP25-AS1|lncRNA|chr20:10026543:10026651:-	0	-
#Partially deleted in new
chr20	10055501	10058303	ENSG00000132623.15|ANKEF1|pc|chr20:10055501:10058303:+	0	+
#Deleted in new
chr20	10185568	10185775	ENSG00000232448.1|AL354824.2|lncRNA|chr20:10185568:10185775:+	0	+
#Deleted in new
chr20	10196817	10196937	ENSG00000227906.7|SNAP25-AS1|lncRNA|chr20:10196817:10196937:-	0	-
#Deleted in new
chr20	10196866	10196990	ENSG00000230506.1|AL354824.1|lncRNA|chr20:10196866:10196990:+	0	+
#Deleted in new
chr20	10198752	10198875	ENSG00000227906.7|SNAP25-AS1|lncRNA|chr20:10198752:10198875:-	0	-
#Deleted in new
chr20	10231483	10231619	ENSG00000227906.7|SNAP25-AS1|lncRNA|chr20:10231483:10231619:-	0	-
#Deleted in new
chr20	10368714	10368719	ENSG00000227906.7|SNAP25-AS1|lncRNA|chr20:10368714:10368719:-	0	-
#Deleted in new
chr20	10368714	10368776	ENSG00000227906.7|SNAP25-AS1|lncRNA|chr20:10368714:10368776:-	0	-
#Deleted in new
chr20	10431683	10431922	ENSG00000125863.18|MKKS|pc|chr20:10431683:10431922:-	0	-
#Deleted in new
chr20	10765169	10765286	ENSG00000234900.1|AL135937.1|lncRNA|chr20:10765169:10765286:-	0	-
#Deleted in new
chr20	10893964	10894020	ENSG00000232900.1|AL050403.1|lncRNA|chr20:10893964:10894020:-	0	-
#Deleted in new
chr20	10894615	10894862	ENSG00000232900.1|AL050403.1|lncRNA|chr20:10894615:10894862:-	0	-
#Deleted in new
chr20	10908825	10908879	ENSG00000270792.5|AL050403.2|lncRNA|chr20:10908825:10908879:+	0	+
#Deleted in new
chr20	10988104	10988173	ENSG00000270792.5|AL050403.2|lncRNA|chr20:10988104:10988173:+	0	+
#Deleted in new
chr20	11029190	11029366	ENSG00000125899.7|C20orf187|lncRNA|chr20:11029190:11029366:+	0	+
#Deleted in new
chr20	11286661	11286779	ENSG00000230990.1|AL049649.1|lncRNA|chr20:11286661:11286779:-	0	-
#Deleted in new
chr20	11294635	11294734	ENSG00000230990.1|AL049649.1|lncRNA|chr20:11294635:11294734:-	0	-
#Deleted in new
chr20	11541486	11541647	ENSG00000282478.1|AL109837.2|lncRNA|chr20:11541486:11541647:-	0	-
#Partially deleted in new
chr20	1175872	1175958	ENSG00000125818.17|PSMF1|pc|chr20:1175872:1175958:+	0	+
#Deleted in new
chr20	11800462	11800911	ENSG00000228422.3|LINC00687|lncRNA|chr20:11800462:11800911:-	0	-
#Deleted in new
chr20	1189171	1189415	ENSG00000125818.17|PSMF1|pc|chr20:1189171:1189415:+	0	+
#Partially deleted in new
chr20	12244168	12244296	ENSG00000235292.1|AL109838.1|lncRNA|chr20:12244168:12244296:-	0	-
#Deleted in new
chr20	12865201	12865677	ENSG00000233048.1|LINC01722|lncRNA|chr20:12865201:12865677:-	0	-
#Deleted in new
chr20	12902307	12902420	ENSG00000233048.1|LINC01722|lncRNA|chr20:12902307:12902420:-	0	-
#Deleted in new
chr20	12940818	12940936	ENSG00000233048.1|LINC01722|lncRNA|chr20:12940818:12940936:-	0	-
#Deleted in new
chr20	12945143	12945192	ENSG00000233048.1|LINC01722|lncRNA|chr20:12945143:12945192:-	0	-
#Deleted in new
chr20	12950337	12950761	ENSG00000234265.1|LINC01723|lncRNA|chr20:12950337:12950761:+	0	+
#Deleted in new
chr20	12950399	12950486	ENSG00000233048.1|LINC01722|lncRNA|chr20:12950399:12950486:-	0	-
#Deleted in new
chr20	12951450	12951627	ENSG00000234265.1|LINC01723|lncRNA|chr20:12951450:12951627:+	0	+
#Deleted in new
chr20	12951764	12952519	ENSG00000233048.1|LINC01722|lncRNA|chr20:12951764:12952519:-	0	-
#Deleted in new
chr20	13079748	13079867	ENSG00000172296.12|SPTLC3|pc|chr20:13079748:13079867:+	0	+
#Partially deleted in new
chr20	1317570	1318418	ENSG00000274322.1|AL136531.2|pc|chr20:1317570:1318418:-	0	-
#Deleted in new
chr20	1345168	1345898	ENSG00000234684.6|SDCBP2-AS1|lncRNA|chr20:1345168:1345898:+	0	+
#Deleted in new
chr20	1359698	1359820	ENSG00000234684.6|SDCBP2-AS1|lncRNA|chr20:1359698:1359820:+	0	+
#Deleted in new
chr20	13600542	13600617	ENSG00000089123.15|TASP1|pc|chr20:13600542:13600617:-	0	-
#Deleted in new
chr20	1361056	1361631	ENSG00000234684.6|SDCBP2-AS1|lncRNA|chr20:1361056:1361631:+	0	+
#Deleted in new
chr20	1361621	1361912	ENSG00000229728.1|AL136531.1|lncRNA|chr20:1361621:1361912:+	0	+
#Deleted in new
chr20	1362396	1362585	ENSG00000229728.1|AL136531.1|lncRNA|chr20:1362396:1362585:+	0	+
#Partially deleted in new
chr20	1371021	1371147	ENSG00000088832.16|FKBP1A|pc|chr20:1371021:1371147:-	0	-
#Deleted in new
chr20	1373077	1373178	ENSG00000234684.6|SDCBP2-AS1|lncRNA|chr20:1373077:1373178:+	0	+
#Deleted in new
chr20	1374483	1374698	ENSG00000234684.6|SDCBP2-AS1|lncRNA|chr20:1374483:1374698:+	0	+
#Deleted in new
chr20	1378069	1378174	ENSG00000088832.16|FKBP1A|pc|chr20:1378069:1378174:-	0	-
#Deleted in new
chr20	13812970	13812995	ENSG00000101247.17|NDUFAF5|pc|chr20:13812970:13812995:+	0	+
#Partially deleted in new
chr20	13817117	13818421	ENSG00000101247.17|NDUFAF5|pc|chr20:13817117:13818421:+	0	+
#Partially deleted in new
chr20	13817117	13821582	ENSG00000101247.17|NDUFAF5|pc|chr20:13817117:13821582:+	0	+
#Deleted in new
chr20	13851323	13851419	ENSG00000101251.11|SEL1L2|pc|chr20:13851323:13851419:-	0	-
#Deleted in new
chr20	14523390	14523454	ENSG00000172264.16|MACROD2|pc|chr20:14523390:14523454:+	0	+
#Deleted in new
chr20	14523397	14523454	ENSG00000172264.16|MACROD2|pc|chr20:14523397:14523454:+	0	+
#Deleted in new
chr20	14626912	14627106	ENSG00000227927.2|MACROD2-IT1|lncRNA|chr20:14626912:14627106:+	0	+
#Deleted in new
chr20	14627063	14627106	ENSG00000227927.2|MACROD2-IT1|lncRNA|chr20:14627063:14627106:+	0	+
#Deleted in new
chr20	14636445	14636524	ENSG00000227927.2|MACROD2-IT1|lncRNA|chr20:14636445:14636524:+	0	+
#Deleted in new
chr20	1470740	1471132	ENSG00000196209.12|SIRPB2|pc|chr20:1470740:1471132:-	0	-
#Deleted in new
chr20	1472667	1473012	ENSG00000196209.12|SIRPB2|pc|chr20:1472667:1473012:-	0	-
#Deleted in new
chr20	1472714	1473012	ENSG00000088833.17|NSFL1C|pc|chr20:1472714:1473012:-	0	-
#Deleted in new
chr20	1472714	1473012	ENSG00000196209.12|SIRPB2|pc|chr20:1472714:1473012:-	0	-
#Deleted in new
chr20	1473117	1473211	ENSG00000196209.12|SIRPB2|pc|chr20:1473117:1473211:-	0	-
#Deleted in new
chr20	1473117	1473260	ENSG00000088833.17|NSFL1C|pc|chr20:1473117:1473260:-	0	-
#Deleted in new
chr20	1473117	1473260	ENSG00000196209.12|SIRPB2|pc|chr20:1473117:1473260:-	0	-
#Deleted in new
chr20	1473791	1473842	ENSG00000088833.17|NSFL1C|pc|chr20:1473791:1473842:-	0	-
#Deleted in new
chr20	1473791	1473870	ENSG00000196209.12|SIRPB2|pc|chr20:1473791:1473870:-	0	-
#Deleted in new
chr20	1474590	1476336	ENSG00000196209.12|SIRPB2|pc|chr20:1474590:1476336:-	0	-
#Deleted in new
chr20	1476139	1476336	ENSG00000196209.12|SIRPB2|pc|chr20:1476139:1476336:-	0	-
#Deleted in new
chr20	1476804	1477403	ENSG00000196209.12|SIRPB2|pc|chr20:1476804:1477403:-	0	-
#Deleted in new
chr20	1477337	1477403	ENSG00000196209.12|SIRPB2|pc|chr20:1477337:1477403:-	0	-
#Deleted in new
chr20	1478265	1478607	ENSG00000196209.12|SIRPB2|pc|chr20:1478265:1478607:-	0	-
#Deleted in new
chr20	1478359	1478607	ENSG00000196209.12|SIRPB2|pc|chr20:1478359:1478607:-	0	-
#Deleted in new
chr20	1478503	1478607	ENSG00000196209.12|SIRPB2|pc|chr20:1478503:1478607:-	0	-
#Deleted in new
chr20	1479133	1480065	ENSG00000196209.12|SIRPB2|pc|chr20:1479133:1480065:-	0	-
#Deleted in new
chr20	1479699	1479794	ENSG00000196209.12|SIRPB2|pc|chr20:1479699:1479794:-	0	-
#Deleted in new
chr20	1479699	1480065	ENSG00000196209.12|SIRPB2|pc|chr20:1479699:1480065:-	0	-
#Deleted in new
chr20	1479925	1480065	ENSG00000196209.12|SIRPB2|pc|chr20:1479925:1480065:-	0	-
#Deleted in new
chr20	1479993	1480065	ENSG00000196209.12|SIRPB2|pc|chr20:1479993:1480065:-	0	-
#Deleted in new
chr20	1480293	1480436	ENSG00000196209.12|SIRPB2|pc|chr20:1480293:1480436:-	0	-
#Partially deleted in new
chr20	14892702	14895581	ENSG00000172264.16|MACROD2|pc|chr20:14892702:14895581:+	0	+
#Deleted in new
chr20	14904940	14906029	ENSG00000235914.1|MACROD2-AS1|lncRNA|chr20:14904940:14906029:-	0	-
#Deleted in new
chr20	1491274	1491383	ENSG00000196209.12|SIRPB2|pc|chr20:1491274:1491383:-	0	-
#Deleted in new
chr20	1491274	1491396	ENSG00000196209.12|SIRPB2|pc|chr20:1491274:1491396:-	0	-
#Deleted in new
chr20	1491274	1491413	ENSG00000196209.12|SIRPB2|pc|chr20:1491274:1491413:-	0	-
#Deleted in new
chr20	1491274	1491453	ENSG00000196209.12|SIRPB2|pc|chr20:1491274:1491453:-	0	-
#Deleted in new
chr20	1491274	1491481	ENSG00000196209.12|SIRPB2|pc|chr20:1491274:1491481:-	0	-
#Deleted in new
chr20	1491274	1491518	ENSG00000196209.12|SIRPB2|pc|chr20:1491274:1491518:-	0	-
#Deleted in new
chr20	1491274	1491587	ENSG00000196209.12|SIRPB2|pc|chr20:1491274:1491587:-	0	-
#Deleted in new
chr20	14929374	14929486	ENSG00000235914.1|MACROD2-AS1|lncRNA|chr20:14929374:14929486:-	0	-
#Deleted in new
chr20	14929374	14929515	ENSG00000235914.1|MACROD2-AS1|lncRNA|chr20:14929374:14929515:-	0	-
#Deleted in new
chr20	1534250	1534441	ENSG00000125900.12|SIRPD|pc|chr20:1534250:1534441:-	0	-
#Deleted in new
chr20	1537154	1537310	ENSG00000125900.12|SIRPD|pc|chr20:1537154:1537310:-	0	-
#Deleted in new
chr20	1537154	1537313	ENSG00000125900.12|SIRPD|pc|chr20:1537154:1537313:-	0	-
#Deleted in new
chr20	1540143	1540335	ENSG00000260861.6|AL049634.2|pc|chr20:1540143:1540335:-	0	-
#Deleted in new
chr20	15552156	15552401	ENSG00000225181.1|AL121584.1|lncRNA|chr20:15552156:15552401:-	0	-
#Deleted in new
chr20	15552611	15552885	ENSG00000225181.1|AL121584.1|lncRNA|chr20:15552611:15552885:-	0	-
#Partially deleted in new
chr20	1557580	1557705	ENSG00000125900.12|SIRPD|pc|chr20:1557580:1557705:-	0	-
#Partially deleted in new
chr20	1557580	1557744	ENSG00000260861.6|AL049634.2|pc|chr20:1557580:1557744:-	0	-
#Partially deleted in new
chr20	1557580	1558843	ENSG00000125900.12|SIRPD|pc|chr20:1557580:1558843:-	0	-
#Deleted in new
chr20	1563520	1565497	ENSG00000101307.15|SIRPB1|pc|chr20:1563520:1565497:-	0	-
#Deleted in new
chr20	1564382	1565497	ENSG00000101307.15|SIRPB1|pc|chr20:1564382:1565497:-	0	-
#Deleted in new
chr20	1564383	1565497	ENSG00000101307.15|SIRPB1|pc|chr20:1564383:1565497:-	0	-
#Deleted in new
chr20	1565204	1565497	ENSG00000101307.15|SIRPB1|pc|chr20:1565204:1565497:-	0	-
#Deleted in new
chr20	157469	157593	ENSG00000088782.4|DEFB127|pc|chr20:157469:157593:+	0	+
#Deleted in new
chr20	1597339	1597433	ENSG00000101307.15|SIRPB1|pc|chr20:1597339:1597433:-	0	-
#Partially deleted in new
chr20	1597339	1598010	ENSG00000101307.15|SIRPB1|pc|chr20:1597339:1598010:-	0	-
#Partially deleted in new
chr20	1597339	1598031	ENSG00000101307.15|SIRPB1|pc|chr20:1597339:1598031:-	0	-
#Partially deleted in new
chr20	1597339	1598050	ENSG00000101307.15|SIRPB1|pc|chr20:1597339:1598050:-	0	-
#Partially deleted in new
chr20	1597339	1598282	ENSG00000101307.15|SIRPB1|pc|chr20:1597339:1598282:-	0	-
#Deleted in new
chr20	15985787	15985962	ENSG00000172264.16|MACROD2|pc|chr20:15985787:15985962:+	0	+
#Partially deleted in new
chr20	1603094	1603207	ENSG00000101307.15|SIRPB1|pc|chr20:1603094:1603207:-	0	-
#Deleted in new
chr20	1629151	1629636	ENSG00000089012.14|SIRPG|pc|chr20:1629151:1629636:-	0	-
#Deleted in new
chr20	1629526	1629636	ENSG00000089012.14|SIRPG|pc|chr20:1629526:1629636:-	0	-
#Deleted in new
chr20	1630221	1630306	ENSG00000089012.14|SIRPG|pc|chr20:1630221:1630306:-	0	-
#Deleted in new
chr20	1630223	1630306	ENSG00000089012.14|SIRPG|pc|chr20:1630223:1630306:-	0	-
#Deleted in new
chr20	1630413	1630643	ENSG00000089012.14|SIRPG|pc|chr20:1630413:1630643:-	0	-
#Deleted in new
chr20	1630694	1630836	ENSG00000089012.14|SIRPG|pc|chr20:1630694:1630836:-	0	-
#Deleted in new
chr20	1638409	1638454	ENSG00000237914.5|SIRPG-AS1|lncRNA|chr20:1638409:1638454:+	0	+
#Split in new
chr20	1646035	1648472	ENSG00000237914.5|SIRPG-AS1|lncRNA|chr20:1646035:1648472:+	0	+
#Deleted in new
chr20	1651223	1651377	ENSG00000089012.14|SIRPG|pc|chr20:1651223:1651377:-	0	-
#Deleted in new
chr20	16576067	16576104	ENSG00000273998.1|AL049794.1|lncRNA|chr20:16576067:16576104:+	0	+
#Deleted in new
chr20	16717544	16717672	ENSG00000228809.2|AL034428.1|lncRNA|chr20:16717544:16717672:-	0	-
#Deleted in new
chr20	16857961	16858494	ENSG00000236985.1|AL121892.1|lncRNA|chr20:16857961:16858494:-	0	-
#Deleted in new
chr20	16859303	16859436	ENSG00000236985.1|AL121892.1|lncRNA|chr20:16859303:16859436:-	0	-
#Deleted in new
chr20	17541064	17541199	ENSG00000125864.13|BFSP1|pc|chr20:17541064:17541199:-	0	-
#Deleted in new
chr20	17565500	17565851	ENSG00000277373.1|AL132765.2|lncRNA|chr20:17565500:17565851:-	0	-
#Deleted in new
chr20	17591931	17592063	ENSG00000125868.15|DSTN|pc|chr20:17591931:17592063:+	0	+
#Duplicated in new
chr20	17659778	17659973	ENSG00000125844.15|RRBP1|pc|chr20:17659778:17659973:-	0	-
#Partially deleted in new
chr20	17941599	17945530	ENSG00000089006.16|SNX5|pc|chr20:17941599:17945530:-	0	-
#Deleted in new
chr20	17944121	17944144	ENSG00000089006.16|SNX5|pc|chr20:17944121:17944144:-	0	-
#Deleted in new
chr20	17961139	17961326	ENSG00000089006.16|SNX5|pc|chr20:17961139:17961326:-	0	-
#Deleted in new
chr20	17961139	17961995	ENSG00000089006.16|SNX5|pc|chr20:17961139:17961995:-	0	-
#Deleted in new
chr20	17962108	17962192	ENSG00000089006.16|SNX5|pc|chr20:17962108:17962192:-	0	-
#Deleted in new
chr20	1804015	1804092	ENSG00000230839.1|AL121760.1|lncRNA|chr20:1804015:1804092:-	0	-
#Deleted in new
chr20	18050640	18050739	ENSG00000125850.10|OVOL2|pc|chr20:18050640:18050739:-	0	-
#Deleted in new
chr20	18070840	18071008	ENSG00000229262.1|AL160411.1|lncRNA|chr20:18070840:18071008:+	0	+
#Deleted in new
chr20	1810553	1810674	ENSG00000230839.1|AL121760.1|lncRNA|chr20:1810553:1810674:-	0	-
#Deleted in new
chr20	1811114	1811224	ENSG00000230839.1|AL121760.1|lncRNA|chr20:1811114:1811224:-	0	-
#Deleted in new
chr20	1817568	1817606	ENSG00000230839.1|AL121760.1|lncRNA|chr20:1817568:1817606:-	0	-
#Partially deleted in new
chr20	18289898	18290074	ENSG00000125846.15|ZNF133|pc|chr20:18289898:18290074:+	0	+
#Deleted in new
chr20	18305007	18305178	ENSG00000125846.15|ZNF133|pc|chr20:18305007:18305178:+	0	+
#Deleted in new
chr20	18305084	18305178	ENSG00000125846.15|ZNF133|pc|chr20:18305084:18305178:+	0	+
#Deleted in new
chr20	18310168	18310306	ENSG00000125846.15|ZNF133|pc|chr20:18310168:18310306:+	0	+
#Deleted in new
chr20	18312635	18314767	ENSG00000125846.15|ZNF133|pc|chr20:18312635:18314767:+	0	+
#Deleted in new
chr20	18313764	18313963	ENSG00000237259.1|AL049646.2|lncRNA|chr20:18313764:18313963:-	0	-
#Deleted in new
chr20	18322551	18322979	ENSG00000230010.1|AL049646.1|lncRNA|chr20:18322551:18322979:-	0	-
#Deleted in new
chr20	18323643	18325234	ENSG00000230010.1|AL049646.1|lncRNA|chr20:18323643:18325234:-	0	-
#Deleted in new
chr20	18323654	18323786	ENSG00000230010.1|AL049646.1|lncRNA|chr20:18323654:18323786:-	0	-
#Deleted in new
chr20	18325147	18325234	ENSG00000230010.1|AL049646.1|lncRNA|chr20:18325147:18325234:-	0	-
#Deleted in new
chr20	18328697	18328975	ENSG00000230010.1|AL049646.1|lncRNA|chr20:18328697:18328975:-	0	-
#Deleted in new
chr20	18328892	18328975	ENSG00000230010.1|AL049646.1|lncRNA|chr20:18328892:18328975:-	0	-
#Deleted in new
chr20	18345489	18345546	ENSG00000230010.1|AL049646.1|lncRNA|chr20:18345489:18345546:-	0	-
#Deleted in new
chr20	18347484	18347542	ENSG00000230010.1|AL049646.1|lncRNA|chr20:18347484:18347542:-	0	-
#Deleted in new
chr20	18359164	18359259	ENSG00000230010.1|AL049646.1|lncRNA|chr20:18359164:18359259:-	0	-
#Deleted in new
chr20	18359164	18359300	ENSG00000230010.1|AL049646.1|lncRNA|chr20:18359164:18359300:-	0	-
#Deleted in new
chr20	18379048	18379069	ENSG00000237282.3|LINC00851|lncRNA|chr20:18379048:18379069:+	0	+
#Deleted in new
chr20	18380771	18381481	ENSG00000237282.3|LINC00851|lncRNA|chr20:18380771:18381481:+	0	+
#Deleted in new
chr20	18380778	18381484	ENSG00000237282.3|LINC00851|lncRNA|chr20:18380778:18381484:+	0	+
#Partially deleted in new
chr20	18383366	18384564	ENSG00000089091.16|DZANK1|pc|chr20:18383366:18384564:-	0	-
#Partially deleted in new
chr20	18383368	18384564	ENSG00000089091.16|DZANK1|pc|chr20:18383368:18384564:-	0	-
#Partially deleted in new
chr20	18383370	18384564	ENSG00000089091.16|DZANK1|pc|chr20:18383370:18384564:-	0	-
#Partially deleted in new
chr20	18383379	18384564	ENSG00000089091.16|DZANK1|pc|chr20:18383379:18384564:-	0	-
#Deleted in new
chr20	18394674	18394703	ENSG00000089091.16|DZANK1|pc|chr20:18394674:18394703:-	0	-
#Deleted in new
chr20	18394674	18394858	ENSG00000089091.16|DZANK1|pc|chr20:18394674:18394858:-	0	-
#Deleted in new
chr20	18428619	18428719	ENSG00000089091.16|DZANK1|pc|chr20:18428619:18428719:-	0	-
#Deleted in new
chr20	18451853	18451962	ENSG00000089091.16|DZANK1|pc|chr20:18451853:18451962:-	0	-
#Partially deleted in new
chr20	18568635	18569155	ENSG00000232388.4|SMIM26|pc|chr20:18568635:18569155:+	0	+
#Deleted in new
chr20	18691967	18692016	ENSG00000233993.1|AL121900.1|lncRNA|chr20:18691967:18692016:-	0	-
#Deleted in new
chr20	18698448	18698709	ENSG00000233993.1|AL121900.1|lncRNA|chr20:18698448:18698709:-	0	-
#Partially deleted in new
chr20	18786064	18788898	ENSG00000179935.9|LINC00652|lncRNA|chr20:18786064:18788898:-	0	-
#Deleted in new
chr20	18789573	18789709	ENSG00000179935.9|LINC00652|lncRNA|chr20:18789573:18789709:-	0	-
#Deleted in new
chr20	18794528	18796067	ENSG00000273148.1|AL035563.1|lncRNA|chr20:18794528:18796067:+	0	+
#Deleted in new
chr20	18809727	18810115	ENSG00000149443.7|C20orf78|lncRNA|chr20:18809727:18810115:-	0	-
#Deleted in new
chr20	18811584	18811716	ENSG00000149443.7|C20orf78|lncRNA|chr20:18811584:18811716:-	0	-
#Deleted in new
chr20	18825265	18825348	ENSG00000149443.7|C20orf78|lncRNA|chr20:18825265:18825348:-	0	-
#Partially deleted in new
chr20	1894782	1894796	ENSG00000198053.11|SIRPA|pc|chr20:1894782:1894796:+	0	+
#Deleted in new
chr20	19056729	19056796	ENSG00000274863.1|AL135936.1|lncRNA|chr20:19056729:19056796:-	0	-
#Deleted in new
chr20	19264077	19264153	ENSG00000179447.2|AL049647.1|lncRNA|chr20:19264077:19264153:-	0	-
#Deleted in new
chr20	19355137	19355141	ENSG00000185052.11|SLC24A3|pc|chr20:19355137:19355141:+	0	+
#Partially deleted in new
chr20	19695435	19695693	ENSG00000232675.7|AL121830.1|lncRNA|chr20:19695435:19695693:-	0	-
#Deleted in new
chr20	19809173	19809282	ENSG00000233895.1|AL121761.1|lncRNA|chr20:19809173:19809282:+	0	+
#Deleted in new
chr20	19809173	19809675	ENSG00000233895.1|AL121761.1|lncRNA|chr20:19809173:19809675:+	0	+
#Partially deleted in new
chr20	19871890	19872284	ENSG00000275142.1|AL132821.1|lncRNA|chr20:19871890:19872284:+	0	+
#Deleted in new
chr20	20069744	20069901	ENSG00000089101.17|CFAP61|pc|chr20:20069744:20069901:+	0	+
#Deleted in new
chr20	20107645	20107771	ENSG00000089101.17|CFAP61|pc|chr20:20107645:20107771:+	0	+
#Deleted in new
chr20	20259697	20259796	ENSG00000243810.1|AL121721.1|lncRNA|chr20:20259697:20259796:-	0	-
#Deleted in new
chr20	21131863	21131957	ENSG00000088970.15|KIZ|pc|chr20:21131863:21131957:+	0	+
#Deleted in new
chr20	21132959	21133179	ENSG00000088970.15|KIZ|pc|chr20:21132959:21133179:+	0	+
#Partially deleted in new
chr20	21151667	21151827	ENSG00000228604.3|AL121759.1|lncRNA|chr20:21151667:21151827:-	0	-
#Deleted in new
chr20	21158403	21158526	ENSG00000228604.3|AL121759.1|lncRNA|chr20:21158403:21158526:-	0	-
#Deleted in new
chr20	21158618	21158741	ENSG00000228604.3|AL121759.1|lncRNA|chr20:21158618:21158741:-	0	-
#Deleted in new
chr20	21160893	21160948	ENSG00000228604.3|AL121759.1|lncRNA|chr20:21160893:21160948:-	0	-
#Deleted in new
chr20	21160893	21160948	ENSG00000232712.6|KIZ-AS1|lncRNA|chr20:21160893:21160948:-	0	-
#Deleted in new
chr20	21194403	21194955	ENSG00000232712.6|KIZ-AS1|lncRNA|chr20:21194403:21194955:-	0	-
#Deleted in new
chr20	21195437	21195518	ENSG00000232712.6|KIZ-AS1|lncRNA|chr20:21195437:21195518:-	0	-
#Deleted in new
chr20	21195971	21196091	ENSG00000232712.6|KIZ-AS1|lncRNA|chr20:21195971:21196091:-	0	-
#Deleted in new
chr20	21202313	21202372	ENSG00000232712.6|KIZ-AS1|lncRNA|chr20:21202313:21202372:-	0	-
#Deleted in new
chr20	21218146	21218265	ENSG00000232712.6|KIZ-AS1|lncRNA|chr20:21218146:21218265:-	0	-
#Deleted in new
chr20	21218146	21218289	ENSG00000232712.6|KIZ-AS1|lncRNA|chr20:21218146:21218289:-	0	-
#Deleted in new
chr20	21226108	21226295	ENSG00000088970.15|KIZ|pc|chr20:21226108:21226295:+	0	+
#Deleted in new
chr20	21226139	21226295	ENSG00000088970.15|KIZ|pc|chr20:21226139:21226295:+	0	+
#Partially deleted in new
chr20	21244244	21246622	ENSG00000088970.15|KIZ|pc|chr20:21244244:21246622:+	0	+
#Deleted in new
chr20	21244470	21244520	ENSG00000088970.15|KIZ|pc|chr20:21244470:21244520:+	0	+
#Deleted in new
chr20	21619195	21619674	ENSG00000279082.3|LINC01727|lncRNA|chr20:21619195:21619674:+	0	+
#Deleted in new
chr20	21626342	21626426	ENSG00000280350.1|LINC01726|lncRNA|chr20:21626342:21626426:-	0	-
#Deleted in new
chr20	21627348	21627442	ENSG00000280350.1|LINC01726|lncRNA|chr20:21627348:21627442:-	0	-
#Deleted in new
chr20	2176775	2177038	ENSG00000125834.12|STK35|pc|chr20:2176775:2177038:+	0	+
#Partially deleted in new
chr20	21970270	21970783	ENSG00000238034.1|AL109807.1|lncRNA|chr20:21970270:21970783:+	0	+
#Deleted in new
chr20	22054089	22054284	ENSG00000234435.2|LINC01432|lncRNA|chr20:22054089:22054284:+	0	+
#Deleted in new
chr20	2207216	2207388	ENSG00000226644.5|AL121899.1|lncRNA|chr20:2207216:2207388:+	0	+
#Deleted in new
chr20	2212908	2213151	ENSG00000226644.5|AL121899.1|lncRNA|chr20:2212908:2213151:+	0	+
#Deleted in new
chr20	22274403	22274546	ENSG00000225321.2|LINC01427|lncRNA|chr20:22274403:22274546:-	0	-
#Deleted in new
chr20	22274407	22274546	ENSG00000225321.2|LINC01427|lncRNA|chr20:22274407:22274546:-	0	-
#Partially deleted in new
chr20	22276420	22280540	ENSG00000225321.2|LINC01427|lncRNA|chr20:22276420:22280540:-	0	-
#Deleted in new
chr20	22280227	22280540	ENSG00000225321.2|LINC01427|lncRNA|chr20:22280227:22280540:-	0	-
#Deleted in new
chr20	22280338	22280540	ENSG00000225321.2|LINC01427|lncRNA|chr20:22280338:22280540:-	0	-
#Deleted in new
chr20	22282353	22282415	ENSG00000225321.2|LINC01427|lncRNA|chr20:22282353:22282415:-	0	-
#Deleted in new
chr20	22282353	22282486	ENSG00000225321.2|LINC01427|lncRNA|chr20:22282353:22282486:-	0	-
#Deleted in new
chr20	22282353	22282672	ENSG00000225321.2|LINC01427|lncRNA|chr20:22282353:22282672:-	0	-
#Deleted in new
chr20	22282543	22282672	ENSG00000225321.2|LINC01427|lncRNA|chr20:22282543:22282672:-	0	-
#Deleted in new
chr20	22282793	22282857	ENSG00000225321.2|LINC01427|lncRNA|chr20:22282793:22282857:-	0	-
#Deleted in new
chr20	22467957	22468064	ENSG00000204684.3|AL133464.1|lncRNA|chr20:22467957:22468064:-	0	-
#Deleted in new
chr20	22547670	22548110	ENSG00000259974.2|LINC00261|lncRNA|chr20:22547670:22548110:-	0	-
#Deleted in new
chr20	22548401	22548497	ENSG00000259974.2|LINC00261|lncRNA|chr20:22548401:22548497:-	0	-
#Deleted in new
chr20	22548847	22548951	ENSG00000259974.2|LINC00261|lncRNA|chr20:22548847:22548951:-	0	-
#Partially deleted in new
chr20	22676071	22678257	ENSG00000230400.2|LINC01747|lncRNA|chr20:22676071:22678257:-	0	-
#Deleted in new
chr20	22732300	22732391	ENSG00000283072.1|AL158175.1|lncRNA|chr20:22732300:22732391:+	0	+
#Deleted in new
chr20	22745446	22745606	ENSG00000283072.1|AL158175.1|lncRNA|chr20:22745446:22745606:+	0	+
#Partially deleted in new
chr20	23010583	23010896	ENSG00000230492.1|AL049651.1|lncRNA|chr20:23010583:23010896:-	0	-
#Deleted in new
chr20	23031541	23031688	ENSG00000234646.6|AL049651.2|lncRNA|chr20:23031541:23031688:+	0	+
#Deleted in new
chr20	23038222	23038305	ENSG00000234646.6|AL049651.2|lncRNA|chr20:23038222:23038305:+	0	+
#Deleted in new
chr20	23038933	23039236	ENSG00000234646.6|AL049651.2|lncRNA|chr20:23038933:23039236:+	0	+
#Deleted in new
chr20	23039055	23039236	ENSG00000234646.6|AL049651.2|lncRNA|chr20:23039055:23039236:+	0	+
#Deleted in new
chr20	23128628	23128729	ENSG00000233746.1|LINC00656|lncRNA|chr20:23128628:23128729:-	0	-
#Deleted in new
chr20	23187212	23187544	ENSG00000275179.1|AL118508.2|lncRNA|chr20:23187212:23187544:+	0	+
#Deleted in new
chr20	23187960	23190305	ENSG00000230387.2|AL118508.1|lncRNA|chr20:23187960:23190305:+	0	+
#Deleted in new
chr20	23187974	23188158	ENSG00000230387.2|AL118508.1|lncRNA|chr20:23187974:23188158:+	0	+
#Deleted in new
chr20	23189782	23190307	ENSG00000230387.2|AL118508.1|lncRNA|chr20:23189782:23190307:+	0	+
#Deleted in new
chr20	23320957	23321209	ENSG00000277901.1|AL390037.1|lncRNA|chr20:23320957:23321209:-	0	-
#Deleted in new
chr20	23322318	23322365	ENSG00000277901.1|AL390037.1|lncRNA|chr20:23322318:23322365:-	0	-
#Deleted in new
chr20	23325002	23325086	ENSG00000277901.1|AL390037.1|lncRNA|chr20:23325002:23325086:-	0	-
#Deleted in new
chr20	23325304	23325352	ENSG00000277901.1|AL390037.1|lncRNA|chr20:23325304:23325352:-	0	-
#Deleted in new
chr20	23356593	23356825	ENSG00000232645.5|LINC01431|lncRNA|chr20:23356593:23356825:-	0	-
#Deleted in new
chr20	23356593	23356969	ENSG00000232645.5|LINC01431|lncRNA|chr20:23356593:23356969:-	0	-
#Deleted in new
chr20	23356794	23357137	ENSG00000232645.5|LINC01431|lncRNA|chr20:23356794:23357137:-	0	-
#Deleted in new
chr20	23357050	23357137	ENSG00000232645.5|LINC01431|lncRNA|chr20:23357050:23357137:-	0	-
#Deleted in new
chr20	23357954	23358005	ENSG00000232645.5|LINC01431|lncRNA|chr20:23357954:23358005:-	0	-
#Deleted in new
chr20	23357954	23358116	ENSG00000232645.5|LINC01431|lncRNA|chr20:23357954:23358116:-	0	-
#Deleted in new
chr20	23440625	23440637	ENSG00000125823.12|CSTL1|pc|chr20:23440625:23440637:+	0	+
#Deleted in new
chr20	23440776	23440818	ENSG00000125823.12|CSTL1|pc|chr20:23440776:23440818:+	0	+
#Deleted in new
chr20	23440776	23440899	ENSG00000125823.12|CSTL1|pc|chr20:23440776:23440899:+	0	+
#Deleted in new
chr20	23458528	23458665	ENSG00000273838.1|AL109954.2|lncRNA|chr20:23458528:23458665:+	0	+
#Deleted in new
chr20	23459066	23459459	ENSG00000273838.1|AL109954.2|lncRNA|chr20:23459066:23459459:+	0	+
#Partially deleted in new
chr20	23481644	23481763	ENSG00000260202.2|AL109954.1|lncRNA|chr20:23481644:23481763:-	0	-
#Deleted in new
chr20	23489415	23489973	ENSG00000276638.1|AL109954.3|lncRNA|chr20:23489415:23489973:-	0	-
#Deleted in new
chr20	23516883	23519031	ENSG00000260202.2|AL109954.1|lncRNA|chr20:23516883:23519031:-	0	-
#Deleted in new
chr20	23518616	23519054	ENSG00000260202.2|AL109954.1|lncRNA|chr20:23518616:23519054:-	0	-
#Deleted in new
chr20	23626705	23629465	ENSG00000101439.8|CST3|pc|chr20:23626705:23629465:-	0	-
#Deleted in new
chr20	23631825	23632316	ENSG00000270001.1|AL121894.2|lncRNA|chr20:23631825:23632316:-	0	-
#Deleted in new
chr20	23638411	23638473	ENSG00000101439.8|CST3|pc|chr20:23638411:23638473:-	0	-
#Duplicated in new
chr20	23750638	23750898	ENSG00000170373.8|CST1|pc|chr20:23750638:23750898:-	0	-
#Deleted in new
chr20	23803738	23803836	ENSG00000230908.1|AL591074.1|lncRNA|chr20:23803738:23803836:+	0	+
#Deleted in new
chr20	23804522	23804644	ENSG00000230908.1|AL591074.1|lncRNA|chr20:23804522:23804644:+	0	+
#Deleted in new
chr20	23805233	23805663	ENSG00000230908.1|AL591074.1|lncRNA|chr20:23805233:23805663:+	0	+
#Duplicated in new
chr20	23826432	23826731	ENSG00000170369.3|CST2|pc|chr20:23826432:23826731:-	0	-
#Deleted in new
chr20	23988608	23988779	ENSG00000149435.12|GGTLC1|pc|chr20:23988608:23988779:-	0	-
#Deleted in new
chr20	24142589	24142966	ENSG00000236151.1|AL110503.1|lncRNA|chr20:24142589:24142966:-	0	-
#Deleted in new
chr20	24144229	24144386	ENSG00000236151.1|AL110503.1|lncRNA|chr20:24144229:24144386:-	0	-
#Deleted in new
chr20	24199766	24199834	ENSG00000230133.1|LINC01721|lncRNA|chr20:24199766:24199834:+	0	+
#Deleted in new
chr20	24211348	24212691	ENSG00000230133.1|LINC01721|lncRNA|chr20:24211348:24212691:+	0	+
#Deleted in new
chr20	24219622	24219702	ENSG00000230133.1|LINC01721|lncRNA|chr20:24219622:24219702:+	0	+
#Deleted in new
chr20	24223703	24224588	ENSG00000230133.1|LINC01721|lncRNA|chr20:24223703:24224588:+	0	+
#Partially deleted in new
chr20	24314669	24314758	ENSG00000232200.2|AL158090.1|lncRNA|chr20:24314669:24314758:-	0	-
#Deleted in new
chr20	24317970	24318086	ENSG00000232200.2|AL158090.1|lncRNA|chr20:24317970:24318086:-	0	-
#Deleted in new
chr20	24491471	24491738	ENSG00000228539.1|AL157413.1|lncRNA|chr20:24491471:24491738:-	0	-
#Partially deleted in new
chr20	24502168	24502345	ENSG00000228539.1|AL157413.1|lncRNA|chr20:24502168:24502345:-	0	-
#Deleted in new
chr20	24680304	24680991	ENSG00000231015.1|AL049594.1|lncRNA|chr20:24680304:24680991:+	0	+
#Deleted in new
chr20	2486640	2486763	ENSG00000088876.11|ZNF343|pc|chr20:2486640:2486763:-	0	-
#Deleted in new
chr20	2491840	2492084	ENSG00000088876.11|ZNF343|pc|chr20:2491840:2492084:-	0	-
#Deleted in new
chr20	2492031	2492084	ENSG00000088876.11|ZNF343|pc|chr20:2492031:2492084:-	0	-
#Deleted in new
chr20	24931839	24932983	ENSG00000274173.1|AL035661.1|lncRNA|chr20:24931839:24932983:+	0	+
#Deleted in new
chr20	2493518	2493577	ENSG00000088876.11|ZNF343|pc|chr20:2493518:2493577:-	0	-
#Deleted in new
chr20	2493518	2493577	ENSG00000256566.1|AL049650.1|pc|chr20:2493518:2493577:-	0	-
#Deleted in new
chr20	2493777	2494044	ENSG00000088876.11|ZNF343|pc|chr20:2493777:2494044:-	0	-
#Deleted in new
chr20	2493777	2494044	ENSG00000256566.1|AL049650.1|pc|chr20:2493777:2494044:-	0	-
#Deleted in new
chr20	2495414	2495524	ENSG00000088876.11|ZNF343|pc|chr20:2495414:2495524:-	0	-
#Deleted in new
chr20	2500655	2500742	ENSG00000088876.11|ZNF343|pc|chr20:2500655:2500742:-	0	-
#Deleted in new
chr20	2500655	2500742	ENSG00000256566.1|AL049650.1|pc|chr20:2500655:2500742:-	0	-
#Deleted in new
chr20	25062961	25063591	ENSG00000275358.1|AL080312.2|lncRNA|chr20:25062961:25063591:-	0	-
#Partially deleted in new
chr20	25070884	25072018	ENSG00000100987.14|VSX1|pc|chr20:25070884:25072018:-	0	-
#Deleted in new
chr20	25071483	25072018	ENSG00000100987.14|VSX1|pc|chr20:25071483:25072018:-	0	-
#Deleted in new
chr20	25072535	25072643	ENSG00000100987.14|VSX1|pc|chr20:25072535:25072643:-	0	-
#Deleted in new
chr20	2508799	2508901	ENSG00000088876.11|ZNF343|pc|chr20:2508799:2508901:-	0	-
#Deleted in new
chr20	2508880	2508907	ENSG00000256566.1|AL049650.1|pc|chr20:2508880:2508907:-	0	-
#Deleted in new
chr20	2508880	2508915	ENSG00000088876.11|ZNF343|pc|chr20:2508880:2508915:-	0	-
#Deleted in new
chr20	2508880	2509132	ENSG00000088876.11|ZNF343|pc|chr20:2508880:2509132:-	0	-
#Deleted in new
chr20	25140788	25142831	ENSG00000230725.5|AL035252.2|lncRNA|chr20:25140788:25142831:-	0	-
#Deleted in new
chr20	25144278	25144423	ENSG00000230725.5|AL035252.2|lncRNA|chr20:25144278:25144423:-	0	-
#Deleted in new
chr20	25144296	25144423	ENSG00000230725.5|AL035252.2|lncRNA|chr20:25144296:25144423:-	0	-
#Deleted in new
chr20	25147448	25147464	ENSG00000230725.5|AL035252.2|lncRNA|chr20:25147448:25147464:-	0	-
#Deleted in new
chr20	25147956	25148790	ENSG00000230725.5|AL035252.2|lncRNA|chr20:25147956:25148790:-	0	-
#Deleted in new
chr20	25149191	25149240	ENSG00000230725.5|AL035252.2|lncRNA|chr20:25149191:25149240:-	0	-
#Deleted in new
chr20	25149191	25149258	ENSG00000230725.5|AL035252.2|lncRNA|chr20:25149191:25149258:-	0	-
#Partially deleted in new
chr20	25224100	25224702	ENSG00000197586.12|ENTPD6|pc|chr20:25224100:25224702:+	0	+
#Partially deleted in new
chr20	25229149	25231933	ENSG00000277938.1|AL035252.3|lncRNA|chr20:25229149:25231933:+	0	+
#Deleted in new
chr20	25239006	25241231	ENSG00000274414.1|AL121772.1|lncRNA|chr20:25239006:25241231:-	0	-
#Deleted in new
chr20	2524454	2524522	ENSG00000088876.11|ZNF343|pc|chr20:2524454:2524522:-	0	-
#Deleted in new
chr20	2524454	2524702	ENSG00000088876.11|ZNF343|pc|chr20:2524454:2524702:-	0	-
#Deleted in new
chr20	25245119	25245229	ENSG00000274414.1|AL121772.1|lncRNA|chr20:25245119:25245229:-	0	-
#Deleted in new
chr20	25251007	25251304	ENSG00000274507.1|AL121772.2|lncRNA|chr20:25251007:25251304:-	0	-
#Deleted in new
chr20	25284914	25285588	ENSG00000276952.1|AL121772.3|lncRNA|chr20:25284914:25285588:-	0	-
#Deleted in new
chr20	25289847	25289930	ENSG00000100994.11|PYGB|pc|chr20:25289847:25289930:+	0	+
#Deleted in new
chr20	25411123	25411286	ENSG00000101003.9|GINS1|pc|chr20:25411123:25411286:+	0	+
#Deleted in new
chr20	25443023	25443115	ENSG00000101003.9|GINS1|pc|chr20:25443023:25443115:+	0	+
#Partially deleted in new
chr20	25445922	25448555	ENSG00000101003.9|GINS1|pc|chr20:25445922:25448555:+	0	+
#Deleted in new
chr20	25452441	25452628	ENSG00000101003.9|GINS1|pc|chr20:25452441:25452628:+	0	+
#Partially deleted in new
chr20	25624044	25624135	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25624044:25624135:+	0	+
#Partially deleted in new
chr20	25624058	25624135	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25624058:25624135:+	0	+
#Deleted in new
chr20	25624156	25624446	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25624156:25624446:+	0	+
#Deleted in new
chr20	25624232	25624426	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25624232:25624426:+	0	+
#Deleted in new
chr20	25632157	25632288	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25632157:25632288:+	0	+
#Deleted in new
chr20	25632209	25632288	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25632209:25632288:+	0	+
#Deleted in new
chr20	25634048	25634170	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25634048:25634170:+	0	+
#Deleted in new
chr20	25634728	25634827	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25634728:25634827:+	0	+
#Deleted in new
chr20	25645530	25645648	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25645530:25645648:+	0	+
#Deleted in new
chr20	25673851	25673908	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25673851:25673908:+	0	+
#Deleted in new
chr20	25673851	25674007	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25673851:25674007:+	0	+
#Partially deleted in new
chr20	25676935	25677548	ENSG00000213742.6|ZNF337-AS1|lncRNA|chr20:25676935:25677548:+	0	+
#Deleted in new
chr20	25680780	25681246	ENSG00000278383.1|AL031673.1|lncRNA|chr20:25680780:25681246:+	0	+
#Deleted in new
chr20	25686390	25686466	ENSG00000130684.13|ZNF337|pc|chr20:25686390:25686466:-	0	-
#Deleted in new
chr20	25686390	25686957	ENSG00000130684.13|ZNF337|pc|chr20:25686390:25686957:-	0	-
#Deleted in new
chr20	25696758	25696815	ENSG00000130684.13|ZNF337|pc|chr20:25696758:25696815:-	0	-
#Deleted in new
chr20	25696758	25696841	ENSG00000130684.13|ZNF337|pc|chr20:25696758:25696841:-	0	-
#Deleted in new
chr20	25751217	25751338	ENSG00000226465.1|AL390198.1|lncRNA|chr20:25751217:25751338:+	0	+
#Deleted in new
chr20	25763465	25763704	ENSG00000175170.14|FAM182B|pc|chr20:25763465:25763704:-	0	-
#Deleted in new
chr20	25764893	25765001	ENSG00000175170.14|FAM182B|pc|chr20:25764893:25765001:-	0	-
#Deleted in new
chr20	257735	257836	ENSG00000186458.4|DEFB132|pc|chr20:257735:257836:+	0	+
#Deleted in new
chr20	25774013	25774159	ENSG00000175170.14|FAM182B|pc|chr20:25774013:25774159:-	0	-
#Partially deleted in new
chr20	25775254	25775312	ENSG00000175170.14|FAM182B|pc|chr20:25775254:25775312:-	0	-
#Deleted in new
chr20	25782035	25782135	ENSG00000175170.14|FAM182B|pc|chr20:25782035:25782135:-	0	-
#Deleted in new
chr20	25786700	25786988	ENSG00000175170.14|FAM182B|pc|chr20:25786700:25786988:-	0	-
#Deleted in new
chr20	25786744	25786988	ENSG00000175170.14|FAM182B|pc|chr20:25786744:25786988:-	0	-
#Deleted in new
chr20	25848704	25848948	ENSG00000175170.14|FAM182B|pc|chr20:25848704:25848948:-	0	-
#Deleted in new
chr20	25850699	25850884	ENSG00000175170.14|FAM182B|pc|chr20:25850699:25850884:-	0	-
#Deleted in new
chr20	25851236	25851312	ENSG00000175170.14|FAM182B|pc|chr20:25851236:25851312:-	0	-
#Deleted in new
chr20	25852097	25852245	ENSG00000175170.14|FAM182B|pc|chr20:25852097:25852245:-	0	-
#Deleted in new
chr20	25859739	25859903	ENSG00000175170.14|FAM182B|pc|chr20:25859739:25859903:-	0	-
#Deleted in new
chr20	25861402	25861577	ENSG00000175170.14|FAM182B|pc|chr20:25861402:25861577:-	0	-
#Deleted in new
chr20	25863059	25863201	ENSG00000175170.14|FAM182B|pc|chr20:25863059:25863201:-	0	-
#Deleted in new
chr20	25867071	25867460	ENSG00000175170.14|FAM182B|pc|chr20:25867071:25867460:-	0	-
#Deleted in new
chr20	25867952	25868026	ENSG00000175170.14|FAM182B|pc|chr20:25867952:25868026:-	0	-
#Deleted in new
chr20	25867952	25868150	ENSG00000175170.14|FAM182B|pc|chr20:25867952:25868150:-	0	-
#Deleted in new
chr20	25867952	25868168	ENSG00000175170.14|FAM182B|pc|chr20:25867952:25868168:-	0	-
#Deleted in new
chr20	25868112	25868225	ENSG00000175170.14|FAM182B|pc|chr20:25868112:25868225:-	0	-
#Deleted in new
chr20	259076	261096	ENSG00000186458.4|DEFB132|pc|chr20:259076:261096:+	0	+
#Deleted in new
chr20	25955811	25955869	ENSG00000226203.1|LINC01733|lncRNA|chr20:25955811:25955869:+	0	+
#Deleted in new
chr20	25956085	25956210	ENSG00000226203.1|LINC01733|lncRNA|chr20:25956085:25956210:+	0	+
#Deleted in new
chr20	25963061	25963196	ENSG00000226203.1|LINC01733|lncRNA|chr20:25963061:25963196:+	0	+
#Deleted in new
chr20	25965002	25969288	ENSG00000226203.1|LINC01733|lncRNA|chr20:25965002:25969288:+	0	+
#Deleted in new
chr20	26008790	26009055	ENSG00000231081.1|AL078587.1|lncRNA|chr20:26008790:26009055:-	0	-
#Deleted in new
chr20	26010254	26010531	ENSG00000231081.1|AL078587.1|lncRNA|chr20:26010254:26010531:-	0	-
#Deleted in new
chr20	26054654	26055085	ENSG00000125804.13|FAM182A|lncRNA|chr20:26054654:26055085:+	0	+
#Deleted in new
chr20	26057397	26057602	ENSG00000125804.13|FAM182A|lncRNA|chr20:26057397:26057602:+	0	+
#Deleted in new
chr20	26065646	26065784	ENSG00000125804.13|FAM182A|lncRNA|chr20:26065646:26065784:+	0	+
#Deleted in new
chr20	26066561	26066637	ENSG00000125804.13|FAM182A|lncRNA|chr20:26066561:26066637:+	0	+
#Deleted in new
chr20	26066983	26067174	ENSG00000125804.13|FAM182A|lncRNA|chr20:26066983:26067174:+	0	+
#Deleted in new
chr20	26068916	26069204	ENSG00000125804.13|FAM182A|lncRNA|chr20:26068916:26069204:+	0	+
#Deleted in new
chr20	26068936	26069204	ENSG00000125804.13|FAM182A|lncRNA|chr20:26068936:26069204:+	0	+
#Deleted in new
chr20	26069038	26069204	ENSG00000125804.13|FAM182A|lncRNA|chr20:26069038:26069204:+	0	+
#Deleted in new
chr20	26069087	26069204	ENSG00000125804.13|FAM182A|lncRNA|chr20:26069087:26069204:+	0	+
#Deleted in new
chr20	26073769	26073812	ENSG00000125804.13|FAM182A|lncRNA|chr20:26073769:26073812:+	0	+
#Deleted in new
chr20	26073769	26073859	ENSG00000125804.13|FAM182A|lncRNA|chr20:26073769:26073859:+	0	+
#Deleted in new
chr20	26073769	26073869	ENSG00000125804.13|FAM182A|lncRNA|chr20:26073769:26073869:+	0	+
#Deleted in new
chr20	26076333	26076440	ENSG00000125804.13|FAM182A|lncRNA|chr20:26076333:26076440:+	0	+
#Deleted in new
chr20	26082893	26082948	ENSG00000125804.13|FAM182A|lncRNA|chr20:26082893:26082948:+	0	+
#Split in new
chr20	26082893	26086917	ENSG00000125804.13|FAM182A|lncRNA|chr20:26082893:26086917:+	0	+
#Deleted in new
chr20	26132886	26132997	ENSG00000230440.1|AL391119.1|lncRNA|chr20:26132886:26132997:-	0	-
#Deleted in new
chr20	26134038	26134198	ENSG00000230440.1|AL391119.1|lncRNA|chr20:26134038:26134198:-	0	-
#Deleted in new
chr20	26189962	26190119	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26189962:26190119:-	0	-
#Deleted in new
chr20	26190990	26191055	ENSG00000238129.5|AL121904.1|lncRNA|chr20:26190990:26191055:+	0	+
#Deleted in new
chr20	26191670	26191763	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26191670:26191763:-	0	-
#Deleted in new
chr20	26191792	26191861	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26191792:26191861:-	0	-
#Deleted in new
chr20	26191792	26191896	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26191792:26191896:-	0	-
#Deleted in new
chr20	26191792	26191900	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26191792:26191900:-	0	-
#Deleted in new
chr20	26191813	26191900	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26191813:26191900:-	0	-
#Deleted in new
chr20	26192128	26192232	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26192128:26192232:-	0	-
#Deleted in new
chr20	26192132	26192232	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26192132:26192232:-	0	-
#Deleted in new
chr20	26192132	26192837	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26192132:26192837:-	0	-
#Deleted in new
chr20	26193387	26193791	ENSG00000238129.5|AL121904.1|lncRNA|chr20:26193387:26193791:+	0	+
#Deleted in new
chr20	26194297	26194444	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26194297:26194444:-	0	-
#Deleted in new
chr20	26194385	26194444	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26194385:26194444:-	0	-
#Deleted in new
chr20	26194549	26194762	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26194549:26194762:-	0	-
#Deleted in new
chr20	26199448	26199523	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26199448:26199523:-	0	-
#Deleted in new
chr20	26199448	26199525	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26199448:26199525:-	0	-
#Deleted in new
chr20	26200195	26200312	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26200195:26200312:-	0	-
#Deleted in new
chr20	26200195	26200316	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26200195:26200316:-	0	-
#Deleted in new
chr20	26200457	26200542	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26200457:26200542:-	0	-
#Deleted in new
chr20	26207673	26207786	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26207673:26207786:-	0	-
#Deleted in new
chr20	26207673	26208043	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26207673:26208043:-	0	-
#Deleted in new
chr20	26207673	26208067	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26207673:26208067:-	0	-
#Deleted in new
chr20	26207673	26208078	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26207673:26208078:-	0	-
#Deleted in new
chr20	26208144	26208238	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26208144:26208238:-	0	-
#Deleted in new
chr20	26208144	26208262	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26208144:26208262:-	0	-
#Deleted in new
chr20	26208302	26208444	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26208302:26208444:-	0	-
#Deleted in new
chr20	26208864	26208891	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26208864:26208891:-	0	-
#Deleted in new
chr20	26208998	26209095	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26208998:26209095:-	0	-
#Deleted in new
chr20	26209122	26209233	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209122:26209233:-	0	-
#Deleted in new
chr20	26209146	26209189	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209146:26209189:-	0	-
#Deleted in new
chr20	26209146	26209222	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209146:26209222:-	0	-
#Deleted in new
chr20	26209146	26209246	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209146:26209246:-	0	-
#Deleted in new
chr20	26209146	26209261	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209146:26209261:-	0	-
#Deleted in new
chr20	26209162	26209222	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209162:26209222:-	0	-
#Deleted in new
chr20	26209169	26209248	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209169:26209248:-	0	-
#Deleted in new
chr20	26209169	26209293	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209169:26209293:-	0	-
#Deleted in new
chr20	26209248	26209323	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209248:26209323:-	0	-
#Deleted in new
chr20	26209263	26209306	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209263:26209306:-	0	-
#Deleted in new
chr20	26209263	26209342	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209263:26209342:-	0	-
#Deleted in new
chr20	26209263	26209357	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209263:26209357:-	0	-
#Deleted in new
chr20	26209263	26209462	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209263:26209462:-	0	-
#Deleted in new
chr20	26209742	26209839	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209742:26209839:-	0	-
#Deleted in new
chr20	26209742	26209844	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26209742:26209844:-	0	-
#Deleted in new
chr20	26251262	26251425	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26251262:26251425:-	0	-
#Deleted in new
chr20	26251262	26251466	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26251262:26251466:-	0	-
#Deleted in new
chr20	26251262	26251492	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26251262:26251492:-	0	-
#Deleted in new
chr20	26251262	26251505	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26251262:26251505:-	0	-
#Deleted in new
chr20	26251262	26251526	ENSG00000227195.10|MIR663AHG|lncRNA|chr20:26251262:26251526:-	0	-
#Deleted in new
chr20	2665257	2665874	ENSG00000228293.1|AL049712.1|lncRNA|chr20:2665257:2665874:+	0	+
#Deleted in new
chr20	267185	268857	ENSG00000272874.1|AL034548.1|lncRNA|chr20:267185:268857:+	0	+
#Deleted in new
chr20	290258	290307	ENSG00000196476.11|C20orf96|pc|chr20:290258:290307:-	0	-
#Deleted in new
chr20	290258	290429	ENSG00000196476.11|C20orf96|pc|chr20:290258:290429:-	0	-
#Deleted in new
chr20	290586	290778	ENSG00000196476.11|C20orf96|pc|chr20:290586:290778:-	0	-
#Deleted in new
chr20	290590	290749	ENSG00000196476.11|C20orf96|pc|chr20:290590:290749:-	0	-
#Deleted in new
chr20	2923206	2923285	ENSG00000132670.20|PTPRA|pc|chr20:2923206:2923285:+	0	+
#Deleted in new
chr20	2947981	2948024	ENSG00000132670.20|PTPRA|pc|chr20:2947981:2948024:+	0	+
#Deleted in new
chr20	30278905	30282135	ENSG00000205611.4|LINC01597|lncRNA|chr20:30278905:30282135:-	0	-
#Deleted in new
chr20	30357109	30357187	ENSG00000231934.1|LINC01598|lncRNA|chr20:30357109:30357187:-	0	-
#Deleted in new
chr20	3110631	3110717	ENSG00000235958.5|UBOX5-AS1|lncRNA|chr20:3110631:3110717:+	0	+
#Deleted in new
chr20	3110636	3110717	ENSG00000235958.5|UBOX5-AS1|lncRNA|chr20:3110636:3110717:+	0	+
#Deleted in new
chr20	3111643	3111752	ENSG00000235958.5|UBOX5-AS1|lncRNA|chr20:3111643:3111752:+	0	+
#Deleted in new
chr20	3116488	3116723	ENSG00000235958.5|UBOX5-AS1|lncRNA|chr20:3116488:3116723:+	0	+
#Deleted in new
chr20	31378351	31378391	ENSG00000180483.6|DEFB119|pc|chr20:31378351:31378391:-	0	-
#Deleted in new
chr20	31388322	31388359	ENSG00000180483.6|DEFB119|pc|chr20:31388322:31388359:-	0	-
#Deleted in new
chr20	31404844	31405085	ENSG00000204548.3|DEFB121|pc|chr20:31404844:31405085:-	0	-
#Deleted in new
chr20	31404868	31405085	ENSG00000204548.3|DEFB121|pc|chr20:31404868:31405085:-	0	-
#Partially deleted in new
chr20	31472598	31473038	ENSG00000180383.3|DEFB124|pc|chr20:31472598:31473038:-	0	-
#Partially deleted in new
chr20	31487031	31487195	ENSG00000233354.1|LINC00028|lncRNA|chr20:31487031:31487195:+	0	+
#Deleted in new
chr20	31535262	31535626	ENSG00000274364.1|AL110115.1|lncRNA|chr20:31535262:31535626:+	0	+
#Deleted in new
chr20	31563973	31564076	ENSG00000235313.1|HM13-IT1|lncRNA|chr20:31563973:31564076:+	0	+
#Deleted in new
chr20	3156683	3156790	ENSG00000185019.16|UBOX5|pc|chr20:3156683:3156790:-	0	-
#Deleted in new
chr20	31577603	31577923	ENSG00000101294.16|HM13|pc|chr20:31577603:31577923:+	0	+
#Deleted in new
chr20	31637932	31637962	ENSG00000131055.4|COX4I2|pc|chr20:31637932:31637962:+	0	+
#Deleted in new
chr20	31780938	31781046	ENSG00000088325.15|TPX2|pc|chr20:31780938:31781046:+	0	+
#Deleted in new
chr20	31884020	31884102	ENSG00000131044.16|TTLL9|pc|chr20:31884020:31884102:+	0	+
#Deleted in new
chr20	31938158	31938263	ENSG00000131044.16|TTLL9|pc|chr20:31938158:31938263:+	0	+
#Deleted in new
chr20	31938181	31938263	ENSG00000131044.16|TTLL9|pc|chr20:31938181:31938263:+	0	+
#Partially deleted in new
chr20	31939141	31941231	ENSG00000131044.16|TTLL9|pc|chr20:31939141:31941231:+	0	+
#Deleted in new
chr20	320312	320781	ENSG00000225377.5|NRSN2-AS1|lncRNA|chr20:320312:320781:-	0	-
#Deleted in new
chr20	320332	320781	ENSG00000225377.5|NRSN2-AS1|lncRNA|chr20:320332:320781:-	0	-
#Partially deleted in new
chr20	32069687	32069751	ENSG00000101336.13|HCK|pc|chr20:32069687:32069751:+	0	+
#Partially deleted in new
chr20	32071661	32072589	ENSG00000101336.13|HCK|pc|chr20:32071661:32072589:+	0	+
#Deleted in new
chr20	3208867	3209033	ENSG00000125877.12|ITPA|pc|chr20:3208867:3209033:+	0	+
#Deleted in new
chr20	3208897	3209033	ENSG00000125877.12|ITPA|pc|chr20:3208897:3209033:+	0	+
#Deleted in new
chr20	32136876	32136997	ENSG00000101337.15|TM9SF4|pc|chr20:32136876:32136997:+	0	+
#Partially deleted in new
chr20	32159142	32160111	ENSG00000101337.15|TM9SF4|pc|chr20:32159142:32160111:+	0	+
#Partially deleted in new
chr20	32234472	32238667	ENSG00000101346.13|POFUT1|pc|chr20:32234472:32238667:+	0	+
#Deleted in new
chr20	32236432	32236716	ENSG00000101346.13|POFUT1|pc|chr20:32236432:32236716:+	0	+
#Deleted in new
chr20	32371777	32371874	ENSG00000171456.16|ASXL1|pc|chr20:32371777:32371874:+	0	+
#Deleted in new
chr20	32372163	32372238	ENSG00000171456.16|ASXL1|pc|chr20:32372163:32372238:+	0	+
#Deleted in new
chr20	32372163	32372242	ENSG00000171456.16|ASXL1|pc|chr20:32372163:32372242:+	0	+
#Deleted in new
chr20	32372163	32372547	ENSG00000171456.16|ASXL1|pc|chr20:32372163:32372547:+	0	+
#Deleted in new
chr20	32372163	32372553	ENSG00000171456.16|ASXL1|pc|chr20:32372163:32372553:+	0	+
#Partially deleted in new
chr20	3238547	3238713	ENSG00000088836.12|SLC4A11|pc|chr20:3238547:3238713:-	0	-
#Partially deleted in new
chr20	3239704	3245382	ENSG00000277287.1|AL109976.1|lncRNA|chr20:3239704:3245382:+	0	+
#Deleted in new
chr20	32430861	32431176	ENSG00000171456.16|ASXL1|pc|chr20:32430861:32431176:+	0	+
#Deleted in new
chr20	32548506	32548886	ENSG00000197183.14|NOL4L|pc|chr20:32548506:32548886:-	0	-
#Partially deleted in new
chr20	32564991	32565015	ENSG00000204393.7|AL133343.1|lncRNA|chr20:32564991:32565015:+	0	+
#Deleted in new
chr20	32593692	32593900	ENSG00000228156.1|AL133343.2|lncRNA|chr20:32593692:32593900:+	0	+
#Partially deleted in new
chr20	32631651	32634270	ENSG00000198547.8|C20orf203|lncRNA|chr20:32631651:32634270:-	0	-
#Deleted in new
chr20	32640565	32640687	ENSG00000198547.8|C20orf203|lncRNA|chr20:32640565:32640687:-	0	-
#Deleted in new
chr20	32651017	32651166	ENSG00000198547.8|C20orf203|lncRNA|chr20:32651017:32651166:-	0	-
#Deleted in new
chr20	32651732	32651759	ENSG00000198547.8|C20orf203|lncRNA|chr20:32651732:32651759:-	0	-
#Deleted in new
chr20	32742475	32742565	ENSG00000149600.11|COMMD7|pc|chr20:32742475:32742565:-	0	-
#Partially deleted in new
chr20	32856620	32858751	ENSG00000260257.2|AL035071.1|lncRNA|chr20:32856620:32858751:+	0	+
#Deleted in new
chr20	33161767	33161898	ENSG00000131050.10|BPIFA2|pc|chr20:33161767:33161898:+	0	+
#Deleted in new
chr20	33180519	33180597	ENSG00000131050.10|BPIFA2|pc|chr20:33180519:33180597:+	0	+
#Deleted in new
chr20	33216919	33217067	ENSG00000224876.1|AL121901.1|lncRNA|chr20:33216919:33217067:-	0	-
#Deleted in new
chr20	33223455	33223607	ENSG00000131059.11|BPIFA3|pc|chr20:33223455:33223607:+	0	+
#Deleted in new
chr20	33298712	33298844	ENSG00000125999.10|BPIFB1|pc|chr20:33298712:33298844:+	0	+
#Deleted in new
chr20	33299070	33299227	ENSG00000125999.10|BPIFB1|pc|chr20:33299070:33299227:+	0	+
#Partially deleted in new
chr20	33372641	33373359	ENSG00000101391.20|CDK5RAP1|pc|chr20:33372641:33373359:-	0	-
#Deleted in new
chr20	33383479	33383521	ENSG00000101391.20|CDK5RAP1|pc|chr20:33383479:33383521:-	0	-
#Deleted in new
chr20	33573973	33574261	ENSG00000078699.21|CBFA2T2|pc|chr20:33573973:33574261:+	0	+
#Deleted in new
chr20	33600335	33600465	ENSG00000078699.21|CBFA2T2|pc|chr20:33600335:33600465:+	0	+
#Deleted in new
chr20	33601829	33601905	ENSG00000078699.21|CBFA2T2|pc|chr20:33601829:33601905:+	0	+
#Deleted in new
chr20	33618447	33618546	ENSG00000078699.21|CBFA2T2|pc|chr20:33618447:33618546:+	0	+
#Deleted in new
chr20	33623772	33623854	ENSG00000078699.21|CBFA2T2|pc|chr20:33623772:33623854:+	0	+
#Deleted in new
chr20	33623772	33623954	ENSG00000078699.21|CBFA2T2|pc|chr20:33623772:33623954:+	0	+
#Deleted in new
chr20	33638738	33639708	ENSG00000078699.21|CBFA2T2|pc|chr20:33638738:33639708:+	0	+
#Partially deleted in new
chr20	33655700	33656423	ENSG00000275223.1|AL121906.2|lncRNA|chr20:33655700:33656423:-	0	-
#Deleted in new
chr20	33666580	33666659	ENSG00000125967.16|NECAB3|pc|chr20:33666580:33666659:-	0	-
#Deleted in new
chr20	33666580	33666702	ENSG00000125967.16|NECAB3|pc|chr20:33666580:33666702:-	0	-
#Partially deleted in new
chr20	33787087	33788974	ENSG00000131061.13|ZNF341|pc|chr20:33787087:33788974:+	0	+
#Deleted in new
chr20	33787372	33787777	ENSG00000230753.5|ZNF341-AS1|lncRNA|chr20:33787372:33787777:-	0	-
#Deleted in new
chr20	33787374	33787777	ENSG00000230753.5|ZNF341-AS1|lncRNA|chr20:33787374:33787777:-	0	-
#Deleted in new
chr20	33787446	33787657	ENSG00000230753.5|ZNF341-AS1|lncRNA|chr20:33787446:33787657:-	0	-
#Deleted in new
chr20	33792968	33793027	ENSG00000230753.5|ZNF341-AS1|lncRNA|chr20:33792968:33793027:-	0	-
#Deleted in new
chr20	33795513	33795616	ENSG00000230753.5|ZNF341-AS1|lncRNA|chr20:33795513:33795616:-	0	-
#Deleted in new
chr20	33983051	33983596	ENSG00000228265.5|RALY-AS1|lncRNA|chr20:33983051:33983596:-	0	-
#Partially deleted in new
chr20	33985616	33988989	ENSG00000276073.1|AL034549.2|lncRNA|chr20:33985616:33988989:-	0	-
#Deleted in new
chr20	33991774	33991818	ENSG00000275784.1|AL034549.1|lncRNA|chr20:33991774:33991818:-	0	-
#Deleted in new
chr20	34014968	34015107	ENSG00000228386.2|AL031668.1|lncRNA|chr20:34014968:34015107:-	0	-
#Deleted in new
chr20	34016457	34016598	ENSG00000228386.2|AL031668.1|lncRNA|chr20:34016457:34016598:-	0	-
#Deleted in new
chr20	34029860	34029927	ENSG00000125970.11|RALY|pc|chr20:34029860:34029927:+	0	+
#Partially deleted in new
chr20	34079909	34084884	ENSG00000125970.11|RALY|pc|chr20:34079909:34084884:+	0	+
#Deleted in new
chr20	34234839	34235030	ENSG00000250917.1|AL035458.2|lncRNA|chr20:34234839:34235030:-	0	-
#Deleted in new
chr20	34249998	34250138	ENSG00000250917.1|AL035458.2|lncRNA|chr20:34249998:34250138:-	0	-
#Deleted in new
chr20	34281631	34281778	ENSG00000272945.1|AL356299.2|lncRNA|chr20:34281631:34281778:-	0	-
#Deleted in new
chr20	34286027	34286466	ENSG00000272945.1|AL356299.2|lncRNA|chr20:34286027:34286466:-	0	-
#Deleted in new
chr20	34417116	34417239	ENSG00000078747.14|ITCH|pc|chr20:34417116:34417239:+	0	+
#Deleted in new
chr20	34441591	34441695	ENSG00000236388.1|ITCH-AS1|lncRNA|chr20:34441591:34441695:-	0	-
#Deleted in new
chr20	34450929	34450999	ENSG00000231795.1|ITCH-IT1|lncRNA|chr20:34450929:34450999:+	0	+
#Deleted in new
chr20	34454414	34454552	ENSG00000231795.1|ITCH-IT1|lncRNA|chr20:34454414:34454552:+	0	+
#Deleted in new
chr20	34529851	34530234	ENSG00000125971.16|DYNLRB1|pc|chr20:34529851:34530234:+	0	+
#Deleted in new
chr20	34529851	34531221	ENSG00000125971.16|DYNLRB1|pc|chr20:34529851:34531221:+	0	+
#Deleted in new
chr20	34546853	34546916	ENSG00000101460.12|MAP1LC3A|pc|chr20:34546853:34546916:+	0	+
#Partially deleted in new
chr20	34549904	34550029	ENSG00000101460.12|MAP1LC3A|pc|chr20:34549904:34550029:+	0	+
#Deleted in new
chr20	34696917	34697243	ENSG00000198646.13|NCOA6|pc|chr20:34696917:34697243:-	0	-
#Deleted in new
chr20	34697140	34697243	ENSG00000198646.13|NCOA6|pc|chr20:34697140:34697243:-	0	-
#Deleted in new
chr20	34697140	34697246	ENSG00000198646.13|NCOA6|pc|chr20:34697140:34697246:-	0	-
#Deleted in new
chr20	34698694	34698790	ENSG00000101464.10|PIGU|pc|chr20:34698694:34698790:-	0	-
#Deleted in new
chr20	34698694	34698803	ENSG00000198646.13|NCOA6|pc|chr20:34698694:34698803:-	0	-
#Deleted in new
chr20	34698694	34698848	ENSG00000198646.13|NCOA6|pc|chr20:34698694:34698848:-	0	-
#Deleted in new
chr20	34893568	34893622	ENSG00000131069.19|ACSS2|pc|chr20:34893568:34893622:+	0	+
#Deleted in new
chr20	34908715	34908903	ENSG00000131069.19|ACSS2|pc|chr20:34908715:34908903:+	0	+
#Deleted in new
chr20	34908904	34908943	ENSG00000131069.19|ACSS2|pc|chr20:34908904:34908943:+	0	+
#Deleted in new
chr20	34975402	34975499	ENSG00000078814.15|MYH7B|pc|chr20:34975402:34975499:+	0	+
#Deleted in new
chr20	35201744	35202400	ENSG00000126005.16|MMP24-AS1|pc|chr20:35201744:35202400:-	0	-
#Deleted in new
chr20	35201746	35203288	ENSG00000126005.16|MMP24-AS1|pc|chr20:35201746:35203288:-	0	-
#Partially deleted in new
chr20	35215892	35216240	ENSG00000101000.5|PROCR|pc|chr20:35215892:35216240:+	0	+
#Deleted in new
chr20	35216461	35216871	ENSG00000126005.16|MMP24-AS1|pc|chr20:35216461:35216871:-	0	-
#Deleted in new
chr20	35216747	35216871	ENSG00000126005.16|MMP24-AS1|pc|chr20:35216747:35216871:-	0	-
#Deleted in new
chr20	35272004	35272056	ENSG00000126005.16|MMP24-AS1|pc|chr20:35272004:35272056:-	0	-
#Deleted in new
chr20	35272004	35272145	ENSG00000126005.16|MMP24-AS1|pc|chr20:35272004:35272145:-	0	-
#Deleted in new
chr20	35272004	35272145	ENSG00000261582.1|AL121753.1|pc|chr20:35272004:35272145:-	0	-
#Deleted in new
chr20	35315176	35315436	ENSG00000101019.21|UQCC1|pc|chr20:35315176:35315436:-	0	-
#Deleted in new
chr20	35345715	35346423	ENSG00000101019.21|UQCC1|pc|chr20:35345715:35346423:-	0	-
#Deleted in new
chr20	35346019	35346423	ENSG00000101019.21|UQCC1|pc|chr20:35346019:35346423:-	0	-
#Deleted in new
chr20	35392235	35392277	ENSG00000101019.21|UQCC1|pc|chr20:35392235:35392277:-	0	-
#Deleted in new
chr20	35409344	35409467	ENSG00000101019.21|UQCC1|pc|chr20:35409344:35409467:-	0	-
#Deleted in new
chr20	35410054	35410155	ENSG00000101019.21|UQCC1|pc|chr20:35410054:35410155:-	0	-
#Deleted in new
chr20	35441231	35441387	ENSG00000125965.8|GDF5|pc|chr20:35441231:35441387:-	0	-
#Deleted in new
chr20	35458303	35458374	ENSG00000126001.15|CEP250|pc|chr20:35458303:35458374:+	0	+
#Deleted in new
chr20	35481132	35481251	ENSG00000230155.6|FO393401.1|lncRNA|chr20:35481132:35481251:-	0	-
#Partially deleted in new
chr20	35511362	35519280	ENSG00000126001.15|CEP250|pc|chr20:35511362:35519280:+	0	+
#Deleted in new
chr20	35516981	35517531	ENSG00000126001.15|CEP250|pc|chr20:35516981:35517531:+	0	+
#Deleted in new
chr20	35523185	35523391	ENSG00000125975.13|C20orf173|pc|chr20:35523185:35523391:-	0	-
#Deleted in new
chr20	355325	355349	ENSG00000125841.12|NRSN2|pc|chr20:355325:355349:+	0	+
#Split in new
chr20	35542821	35545404	ENSG00000125991.19|ERGIC3|pc|chr20:35542821:35545404:+	0	+
#Deleted in new
chr20	35543657	35543909	ENSG00000125991.19|ERGIC3|pc|chr20:35543657:35543909:+	0	+
#Deleted in new
chr20	35543660	35543804	ENSG00000125991.19|ERGIC3|pc|chr20:35543660:35543804:+	0	+
#Partially deleted in new
chr20	35548807	35549783	ENSG00000125991.19|ERGIC3|pc|chr20:35548807:35549783:+	0	+
#Deleted in new
chr20	35549162	35549207	ENSG00000125991.19|ERGIC3|pc|chr20:35549162:35549207:+	0	+
#Deleted in new
chr20	35682663	35682791	ENSG00000244005.12|NFS1|pc|chr20:35682663:35682791:-	0	-
#Deleted in new
chr20	35692248	35692296	ENSG00000244005.12|NFS1|pc|chr20:35692248:35692296:-	0	-
#Deleted in new
chr20	35692248	35692370	ENSG00000244005.12|NFS1|pc|chr20:35692248:35692370:-	0	-
#Deleted in new
chr20	35694571	35694885	ENSG00000244005.12|NFS1|pc|chr20:35694571:35694885:-	0	-
#Partially deleted in new
chr20	35707119	35707988	ENSG00000131051.22|RBM39|pc|chr20:35707119:35707988:-	0	-
#Partially deleted in new
chr20	35708803	35709274	ENSG00000131051.22|RBM39|pc|chr20:35708803:35709274:-	0	-
#Deleted in new
chr20	35710282	35710420	ENSG00000131051.22|RBM39|pc|chr20:35710282:35710420:-	0	-
#Deleted in new
chr20	35710282	35710566	ENSG00000131051.22|RBM39|pc|chr20:35710282:35710566:-	0	-
#Deleted in new
chr20	35713293	35713415	ENSG00000131051.22|RBM39|pc|chr20:35713293:35713415:-	0	-
#Deleted in new
chr20	35713317	35713407	ENSG00000131051.22|RBM39|pc|chr20:35713317:35713407:-	0	-
#Deleted in new
chr20	35713701	35713857	ENSG00000131051.22|RBM39|pc|chr20:35713701:35713857:-	0	-
#Deleted in new
chr20	35713831	35713857	ENSG00000131051.22|RBM39|pc|chr20:35713831:35713857:-	0	-
#Deleted in new
chr20	35782327	35782609	ENSG00000025293.16|PHF20|pc|chr20:35782327:35782609:+	0	+
#Deleted in new
chr20	35800093	35800173	ENSG00000025293.16|PHF20|pc|chr20:35800093:35800173:+	0	+
#Deleted in new
chr20	35838354	35838442	ENSG00000025293.16|PHF20|pc|chr20:35838354:35838442:+	0	+
#Deleted in new
chr20	35845384	35845508	ENSG00000025293.16|PHF20|pc|chr20:35845384:35845508:+	0	+
#Deleted in new
chr20	35855230	35855291	ENSG00000025293.16|PHF20|pc|chr20:35855230:35855291:+	0	+
#Deleted in new
chr20	35855253	35855291	ENSG00000025293.16|PHF20|pc|chr20:35855253:35855291:+	0	+
#Deleted in new
chr20	35855300	35855572	ENSG00000025293.16|PHF20|pc|chr20:35855300:35855572:+	0	+
#Deleted in new
chr20	359258	359405	ENSG00000125841.12|NRSN2|pc|chr20:359258:359405:+	0	+
#Deleted in new
chr20	359258	359660	ENSG00000125841.12|NRSN2|pc|chr20:359258:359660:+	0	+
#Deleted in new
chr20	35957720	35957774	ENSG00000149646.12|CNBD2|pc|chr20:35957720:35957774:+	0	+
#Deleted in new
chr20	35958861	35959054	ENSG00000171222.10|SCAND1|pc|chr20:35958861:35959054:-	0	-
#Deleted in new
chr20	35959412	35959472	ENSG00000171222.10|SCAND1|pc|chr20:35959412:35959472:-	0	-
#Deleted in new
chr20	36074306	36074448	ENSG00000234139.2|AL035420.1|lncRNA|chr20:36074306:36074448:+	0	+
#Deleted in new
chr20	36074855	36074909	ENSG00000234139.2|AL035420.1|lncRNA|chr20:36074855:36074909:+	0	+
#Deleted in new
chr20	36087712	36088192	ENSG00000237063.1|AL035420.2|lncRNA|chr20:36087712:36088192:-	0	-
#Partially deleted in new
chr20	36121659	36121816	ENSG00000088367.21|EPB41L1|pc|chr20:36121659:36121816:+	0	+
#Deleted in new
chr20	36121721	36121816	ENSG00000088367.21|EPB41L1|pc|chr20:36121721:36121816:+	0	+
#Deleted in new
chr20	36125422	36125527	ENSG00000088367.21|EPB41L1|pc|chr20:36125422:36125527:+	0	+
#Deleted in new
chr20	3615827	3615947	ENSG00000088812.17|ATRN|pc|chr20:3615827:3615947:+	0	+
#Partially deleted in new
chr20	362834	362913	ENSG00000101255.10|TRIB3|pc|chr20:362834:362913:+	0	+
#Deleted in new
chr20	36507701	36508274	ENSG00000232907.7|DLGAP4-AS1|lncRNA|chr20:36507701:36508274:-	0	-
#Deleted in new
chr20	36508811	36508825	ENSG00000232907.7|DLGAP4-AS1|lncRNA|chr20:36508811:36508825:-	0	-
#Deleted in new
chr20	36510879	36511032	ENSG00000232907.7|DLGAP4-AS1|lncRNA|chr20:36510879:36511032:-	0	-
#Deleted in new
chr20	36512608	36512725	ENSG00000232907.7|DLGAP4-AS1|lncRNA|chr20:36512608:36512725:-	0	-
#Deleted in new
chr20	36562206	36562325	ENSG00000232907.7|DLGAP4-AS1|lncRNA|chr20:36562206:36562325:-	0	-
#Deleted in new
chr20	36562620	36562736	ENSG00000232907.7|DLGAP4-AS1|lncRNA|chr20:36562620:36562736:-	0	-
#Deleted in new
chr20	36570491	36570576	ENSG00000232907.7|DLGAP4-AS1|lncRNA|chr20:36570491:36570576:-	0	-
#Deleted in new
chr20	3667964	3669000	ENSG00000149451.17|ADAM33|pc|chr20:3667964:3669000:-	0	-
#Deleted in new
chr20	3667969	3668997	ENSG00000149451.17|ADAM33|pc|chr20:3667969:3668997:-	0	-
#Deleted in new
chr20	3667969	3669000	ENSG00000149451.17|ADAM33|pc|chr20:3667969:3669000:-	0	-
#Deleted in new
chr20	3667973	3668997	ENSG00000149451.17|ADAM33|pc|chr20:3667973:3668997:-	0	-
#Deleted in new
chr20	3667973	3669000	ENSG00000149451.17|ADAM33|pc|chr20:3667973:3669000:-	0	-
#Deleted in new
chr20	3668581	3668997	ENSG00000149451.17|ADAM33|pc|chr20:3668581:3668997:-	0	-
#Deleted in new
chr20	37081887	37082029	ENSG00000080839.11|RBL1|pc|chr20:37081887:37082029:-	0	-
#Deleted in new
chr20	37101225	37101418	ENSG00000101353.14|MROH8|pc|chr20:37101225:37101418:-	0	-
#Deleted in new
chr20	37101226	37101418	ENSG00000101353.14|MROH8|pc|chr20:37101226:37101418:-	0	-
#Deleted in new
chr20	37101229	37101418	ENSG00000101353.14|MROH8|pc|chr20:37101229:37101418:-	0	-
#Partially deleted in new
chr20	37200446	37200494	ENSG00000118705.16|RPN2|pc|chr20:37200446:37200494:+	0	+
#Deleted in new
chr20	37298762	37298879	ENSG00000101363.12|MANBAL|pc|chr20:37298762:37298879:+	0	+
#Deleted in new
chr20	37302279	37302323	ENSG00000101363.12|MANBAL|pc|chr20:37302279:37302323:+	0	+
#Deleted in new
chr20	37365203	37365277	ENSG00000197122.11|SRC|pc|chr20:37365203:37365277:+	0	+
#Deleted in new
chr20	37383667	37383702	ENSG00000197122.11|SRC|pc|chr20:37383667:37383702:+	0	+
#Deleted in new
chr20	37492471	37492949	ENSG00000166619.12|BLCAP|pc|chr20:37492471:37492949:-	0	-
#Deleted in new
chr20	37492533	37492949	ENSG00000166619.12|BLCAP|pc|chr20:37492533:37492949:-	0	-
#Deleted in new
chr20	375444	375570	ENSG00000101255.10|TRIB3|pc|chr20:375444:375570:+	0	+
#Deleted in new
chr20	37571102	37571298	ENSG00000274469.1|LINC01746|lncRNA|chr20:37571102:37571298:+	0	+
#Deleted in new
chr20	37571893	37571965	ENSG00000274469.1|LINC01746|lncRNA|chr20:37571893:37571965:+	0	+
#Deleted in new
chr20	37583866	37583935	ENSG00000274469.1|LINC01746|lncRNA|chr20:37583866:37583935:+	0	+
#Deleted in new
chr20	37619297	37619439	ENSG00000225759.1|LINC00489|lncRNA|chr20:37619297:37619439:-	0	-
#Partially deleted in new
chr20	37682071	37683234	ENSG00000204117.1|AL162293.1|lncRNA|chr20:37682071:37683234:+	0	+
#Deleted in new
chr20	38019004	38019144	ENSG00000101407.12|TTI1|pc|chr20:38019004:38019144:-	0	-
#Deleted in new
chr20	3809896	3810014	ENSG00000275491.1|LINC01730|lncRNA|chr20:3809896:3810014:+	0	+
#Deleted in new
chr20	38103523	38104961	ENSG00000277550.1|AL031651.1|lncRNA|chr20:38103523:38104961:-	0	-
#Partially deleted in new
chr20	381245	381500	ENSG00000101255.10|TRIB3|pc|chr20:381245:381500:+	0	+
#Deleted in new
chr20	38124769	38125081	ENSG00000101413.11|RPRD1B|pc|chr20:38124769:38125081:+	0	+
#Deleted in new
chr20	38127296	38127780	ENSG00000101413.11|RPRD1B|pc|chr20:38127296:38127780:+	0	+
#Deleted in new
chr20	381296	381500	ENSG00000101255.10|TRIB3|pc|chr20:381296:381500:+	0	+
#Partially deleted in new
chr20	38145349	38146894	ENSG00000198959.11|TGM2|pc|chr20:38145349:38146894:-	0	-
#Partially deleted in new
chr20	3820530	3820758	ENSG00000125843.10|AP5S1|pc|chr20:3820530:3820758:+	0	+
#Deleted in new
chr20	3820535	3820702	ENSG00000125843.10|AP5S1|pc|chr20:3820535:3820702:+	0	+
#Partially deleted in new
chr20	3820555	3820758	ENSG00000125843.10|AP5S1|pc|chr20:3820555:3820758:+	0	+
#Deleted in new
chr20	38233250	38233799	ENSG00000277829.1|AL031651.2|lncRNA|chr20:38233250:38233799:-	0	-
#Deleted in new
chr20	38236805	38236941	ENSG00000149633.11|KIAA1755|pc|chr20:38236805:38236941:-	0	-
#Partially deleted in new
chr20	3823870	3828837	ENSG00000125843.10|AP5S1|pc|chr20:3823870:3828837:+	0	+
#Deleted in new
chr20	382432	382626	ENSG00000101255.10|TRIB3|pc|chr20:382432:382626:+	0	+
#Deleted in new
chr20	38288330	38288787	ENSG00000206249.3|AL359555.1|lncRNA|chr20:38288330:38288787:-	0	-
#Deleted in new
chr20	38288715	38288947	ENSG00000101425.12|BPI|pc|chr20:38288715:38288947:+	0	+
#Deleted in new
chr20	38289026	38289157	ENSG00000101425.12|BPI|pc|chr20:38289026:38289157:+	0	+
#Deleted in new
chr20	38289580	38289746	ENSG00000206249.3|AL359555.1|lncRNA|chr20:38289580:38289746:-	0	-
#Deleted in new
chr20	38317648	38317737	ENSG00000101425.12|BPI|pc|chr20:38317648:38317737:+	0	+
#Deleted in new
chr20	38317671	38317737	ENSG00000101425.12|BPI|pc|chr20:38317671:38317737:+	0	+
#Deleted in new
chr20	38319785	38319981	ENSG00000101425.12|BPI|pc|chr20:38319785:38319981:+	0	+
#Deleted in new
chr20	38321636	38321808	ENSG00000101425.12|BPI|pc|chr20:38321636:38321808:+	0	+
#Deleted in new
chr20	38378824	38378872	ENSG00000275285.1|AL391095.2|lncRNA|chr20:38378824:38378872:+	0	+
#Deleted in new
chr20	38382849	38383179	ENSG00000275285.1|AL391095.2|lncRNA|chr20:38382849:38383179:+	0	+
#Deleted in new
chr20	38406010	38406322	ENSG00000224635.1|AL391095.1|lncRNA|chr20:38406010:38406322:-	0	-
#Partially deleted in new
chr20	38415105	38416797	ENSG00000224635.1|AL391095.1|lncRNA|chr20:38415105:38416797:-	0	-
#Deleted in new
chr20	38418482	38419202	ENSG00000275401.1|AL391095.3|lncRNA|chr20:38418482:38419202:-	0	-
#Deleted in new
chr20	38421005	38421098	ENSG00000196756.11|SNHG17|lncRNA|chr20:38421005:38421098:-	0	-
#Split in new
chr20	38421005	38422241	ENSG00000196756.11|SNHG17|lncRNA|chr20:38421005:38422241:-	0	-
#Deleted in new
chr20	38422091	38422241	ENSG00000196756.11|SNHG17|lncRNA|chr20:38422091:38422241:-	0	-
#Deleted in new
chr20	38422191	38422241	ENSG00000196756.11|SNHG17|lncRNA|chr20:38422191:38422241:-	0	-
#Deleted in new
chr20	38425934	38426048	ENSG00000196756.11|SNHG17|lncRNA|chr20:38425934:38426048:-	0	-
#Deleted in new
chr20	38425934	38426052	ENSG00000196756.11|SNHG17|lncRNA|chr20:38425934:38426052:-	0	-
#Deleted in new
chr20	38426418	38426503	ENSG00000196756.11|SNHG17|lncRNA|chr20:38426418:38426503:-	0	-
#Deleted in new
chr20	38426459	38426503	ENSG00000196756.11|SNHG17|lncRNA|chr20:38426459:38426503:-	0	-
#Deleted in new
chr20	38427679	38427766	ENSG00000196756.11|SNHG17|lncRNA|chr20:38427679:38427766:-	0	-
#Deleted in new
chr20	38427679	38429330	ENSG00000196756.11|SNHG17|lncRNA|chr20:38427679:38429330:-	0	-
#Deleted in new
chr20	38430779	38431112	ENSG00000196756.11|SNHG17|lncRNA|chr20:38430779:38431112:-	0	-
#Deleted in new
chr20	38431040	38431066	ENSG00000196756.11|SNHG17|lncRNA|chr20:38431040:38431066:-	0	-
#Deleted in new
chr20	38431040	38431112	ENSG00000196756.11|SNHG17|lncRNA|chr20:38431040:38431112:-	0	-
#Deleted in new
chr20	38434503	38434626	ENSG00000196756.11|SNHG17|lncRNA|chr20:38434503:38434626:-	0	-
#Partially deleted in new
chr20	38446684	38447623	ENSG00000174365.19|SNHG11|lncRNA|chr20:38446684:38447623:+	0	+
#Deleted in new
chr20	38446886	38447623	ENSG00000174365.19|SNHG11|lncRNA|chr20:38446886:38447623:+	0	+
#Deleted in new
chr20	38447313	38447623	ENSG00000174365.19|SNHG11|lncRNA|chr20:38447313:38447623:+	0	+
#Deleted in new
chr20	38447465	38447623	ENSG00000174365.19|SNHG11|lncRNA|chr20:38447465:38447623:+	0	+
#Deleted in new
chr20	38447537	38447623	ENSG00000174365.19|SNHG11|lncRNA|chr20:38447537:38447623:+	0	+
#Deleted in new
chr20	38447929	38448011	ENSG00000174365.19|SNHG11|lncRNA|chr20:38447929:38448011:+	0	+
#Partially deleted in new
chr20	38447929	38448093	ENSG00000174365.19|SNHG11|lncRNA|chr20:38447929:38448093:+	0	+
#Partially deleted in new
chr20	38450261	38450447	ENSG00000174365.19|SNHG11|lncRNA|chr20:38450261:38450447:+	0	+
#Deleted in new
chr20	38450335	38450363	ENSG00000174365.19|SNHG11|lncRNA|chr20:38450335:38450363:+	0	+
#Partially deleted in new
chr20	38450335	38450447	ENSG00000174365.19|SNHG11|lncRNA|chr20:38450335:38450447:+	0	+
#Deleted in new
chr20	38450779	38450857	ENSG00000174365.19|SNHG11|lncRNA|chr20:38450779:38450857:+	0	+
#Deleted in new
chr20	385452	385733	ENSG00000101255.10|TRIB3|pc|chr20:385452:385733:+	0	+
#Deleted in new
chr20	38585434	38585695	ENSG00000182035.11|ADIG|pc|chr20:38585434:38585695:+	0	+
#Partially deleted in new
chr20	3865682	3876110	ENSG00000088888.17|MAVS|pc|chr20:3865682:3876110:+	0	+
#Partially deleted in new
chr20	3865682	3876123	ENSG00000088888.17|MAVS|pc|chr20:3865682:3876123:+	0	+
#Deleted in new
chr20	3888238	3888549	ENSG00000229539.1|AL353194.1|lncRNA|chr20:3888238:3888549:-	0	-
#Partially deleted in new
chr20	3889815	3889932	ENSG00000125779.21|PANK2|pc|chr20:3889815:3889932:+	0	+
#Deleted in new
chr20	3891239	3891411	ENSG00000125779.21|PANK2|pc|chr20:3891239:3891411:+	0	+
#Deleted in new
chr20	3908689	3908905	ENSG00000125779.21|PANK2|pc|chr20:3908689:3908905:+	0	+
#Deleted in new
chr20	3921278	3921869	ENSG00000275582.1|AL031670.1|lncRNA|chr20:3921278:3921869:-	0	-
#Partially deleted in new
chr20	39213776	39214818	ENSG00000230324.1|LINC01734|lncRNA|chr20:39213776:39214818:-	0	-
#Deleted in new
chr20	3924817	3924881	ENSG00000125779.21|PANK2|pc|chr20:3924817:3924881:+	0	+
#Split in new
chr20	3929221	3929882	ENSG00000125779.21|PANK2|pc|chr20:3929221:3929882:+	0	+
#Partially deleted in new
chr20	3929673	3929873	ENSG00000125779.21|PANK2|pc|chr20:3929673:3929873:+	0	+
#Deleted in new
chr20	3974331	3974387	ENSG00000101236.16|RNF24|pc|chr20:3974331:3974387:-	0	-
#Deleted in new
chr20	3974331	3974400	ENSG00000101236.16|RNF24|pc|chr20:3974331:3974400:-	0	-
#Deleted in new
chr20	40004476	40004491	ENSG00000237767.1|LINC01370|lncRNA|chr20:40004476:40004491:+	0	+
#Deleted in new
chr20	40004483	40004491	ENSG00000237767.1|LINC01370|lncRNA|chr20:40004483:40004491:+	0	+
#Deleted in new
chr20	40034160	40034279	ENSG00000233415.1|AL133419.1|lncRNA|chr20:40034160:40034279:+	0	+
#Deleted in new
chr20	40043471	40043889	ENSG00000233415.1|AL133419.1|lncRNA|chr20:40043471:40043889:+	0	+
#Deleted in new
chr20	410411	410764	ENSG00000125826.20|RBCK1|pc|chr20:410411:410764:+	0	+
#Partially deleted in new
chr20	41098328	41098824	ENSG00000226648.1|PLCG1-AS1|lncRNA|chr20:41098328:41098824:-	0	-
#Deleted in new
chr20	41100657	41100792	ENSG00000226648.1|PLCG1-AS1|lncRNA|chr20:41100657:41100792:-	0	-
#Partially deleted in new
chr20	41133486	41133645	ENSG00000226648.1|PLCG1-AS1|lncRNA|chr20:41133486:41133645:-	0	-
#Deleted in new
chr20	41188432	41188552	ENSG00000124181.14|PLCG1|pc|chr20:41188432:41188552:+	0	+
#Deleted in new
chr20	41213733	41213899	ENSG00000174306.21|ZHX3|pc|chr20:41213733:41213899:-	0	-
#Deleted in new
chr20	41213757	41213899	ENSG00000174306.21|ZHX3|pc|chr20:41213757:41213899:-	0	-
#Deleted in new
chr20	41267462	41267612	ENSG00000174306.21|ZHX3|pc|chr20:41267462:41267612:-	0	-
#Deleted in new
chr20	417219	417342	ENSG00000125826.20|RBCK1|pc|chr20:417219:417342:+	0	+
#Deleted in new
chr20	4176045	4176163	ENSG00000088826.17|SMOX|pc|chr20:4176045:4176163:+	0	+
#Partially deleted in new
chr20	42685403	42685732	ENSG00000229042.2|AL031656.1|lncRNA|chr20:42685403:42685732:+	0	+
#Deleted in new
chr20	42685482	42685831	ENSG00000229042.2|AL031656.1|lncRNA|chr20:42685482:42685831:+	0	+
#Partially deleted in new
chr20	42686147	42686312	ENSG00000229042.2|AL031656.1|lncRNA|chr20:42686147:42686312:+	0	+
#Deleted in new
chr20	435479	435970	ENSG00000125875.13|TBC1D20|pc|chr20:435479:435970:-	0	-
#Deleted in new
chr20	43618242	43618353	ENSG00000101052.12|IFT52|pc|chr20:43618242:43618353:+	0	+
#Deleted in new
chr20	44214887	44215003	ENSG00000223891.5|OSER1-AS1|lncRNA|chr20:44214887:44215003:+	0	+
#Deleted in new
chr20	44214897	44215003	ENSG00000223891.5|OSER1-AS1|lncRNA|chr20:44214897:44215003:+	0	+
#Deleted in new
chr20	44223718	44223872	ENSG00000223891.5|OSER1-AS1|lncRNA|chr20:44223718:44223872:+	0	+
#Deleted in new
chr20	44224820	44224978	ENSG00000223891.5|OSER1-AS1|lncRNA|chr20:44224820:44224978:+	0	+
#Deleted in new
chr20	44224820	44225071	ENSG00000223891.5|OSER1-AS1|lncRNA|chr20:44224820:44225071:+	0	+
#Deleted in new
chr20	44224820	44226027	ENSG00000223891.5|OSER1-AS1|lncRNA|chr20:44224820:44226027:+	0	+
#Deleted in new
chr20	44347551	44347818	ENSG00000226812.2|AL117382.1|lncRNA|chr20:44347551:44347818:-	0	-
#Deleted in new
chr20	44351867	44351950	ENSG00000226812.2|AL117382.1|lncRNA|chr20:44351867:44351950:-	0	-
#Deleted in new
chr20	44372745	44373009	ENSG00000229005.2|HNF4A-AS1|lncRNA|chr20:44372745:44373009:-	0	-
#Deleted in new
chr20	44377742	44377884	ENSG00000229005.2|HNF4A-AS1|lncRNA|chr20:44377742:44377884:-	0	-
#Deleted in new
chr20	44384522	44384671	ENSG00000229005.2|HNF4A-AS1|lncRNA|chr20:44384522:44384671:-	0	-
#Deleted in new
chr20	44384522	44384672	ENSG00000229005.2|HNF4A-AS1|lncRNA|chr20:44384522:44384672:-	0	-
#Deleted in new
chr20	44391435	44391537	ENSG00000233376.1|AL117382.2|lncRNA|chr20:44391435:44391537:-	0	-
#Deleted in new
chr20	44448776	44449054	ENSG00000168746.8|LINC01620|lncRNA|chr20:44448776:44449054:-	0	-
#Deleted in new
chr20	44448800	44449054	ENSG00000168746.8|LINC01620|lncRNA|chr20:44448800:44449054:-	0	-
#Deleted in new
chr20	44449959	44450090	ENSG00000168746.8|LINC01620|lncRNA|chr20:44449959:44450090:-	0	-
#Deleted in new
chr20	44450536	44450548	ENSG00000168746.8|LINC01620|lncRNA|chr20:44450536:44450548:-	0	-
#Deleted in new
chr20	44450536	44450557	ENSG00000168746.8|LINC01620|lncRNA|chr20:44450536:44450557:-	0	-
#Deleted in new
chr20	44451983	44452173	ENSG00000168746.8|LINC01620|lncRNA|chr20:44451983:44452173:-	0	-
#Deleted in new
chr20	44452022	44452173	ENSG00000168746.8|LINC01620|lncRNA|chr20:44452022:44452173:-	0	-
#Deleted in new
chr20	44461762	44462282	ENSG00000168746.8|LINC01620|lncRNA|chr20:44461762:44462282:-	0	-
#Deleted in new
chr20	44462223	44462282	ENSG00000168746.8|LINC01620|lncRNA|chr20:44462223:44462282:-	0	-
#Deleted in new
chr20	44465164	44465328	ENSG00000168746.8|LINC01620|lncRNA|chr20:44465164:44465328:-	0	-
#Deleted in new
chr20	44465164	44465344	ENSG00000168746.8|LINC01620|lncRNA|chr20:44465164:44465344:-	0	-
#Deleted in new
chr20	44465164	44465349	ENSG00000168746.8|LINC01620|lncRNA|chr20:44465164:44465349:-	0	-
#Deleted in new
chr20	44478623	44478647	ENSG00000124120.10|TTPAL|pc|chr20:44478623:44478647:+	0	+
#Deleted in new
chr20	44519311	44519414	ENSG00000132824.13|SERINC3|pc|chr20:44519311:44519414:-	0	-
#Deleted in new
chr20	44564200	44564340	ENSG00000168734.13|PKIG|pc|chr20:44564200:44564340:+	0	+
#Deleted in new
chr20	44656450	44657051	ENSG00000132832.10|LINC01260|lncRNA|chr20:44656450:44657051:-	0	-
#Deleted in new
chr20	44656450	44657051	ENSG00000283440.1|AL139352.1|lncRNA|chr20:44656450:44657051:-	0	-
#Deleted in new
chr20	44658994	44659181	ENSG00000132832.10|LINC01260|lncRNA|chr20:44658994:44659181:-	0	-
#Deleted in new
chr20	44658994	44659181	ENSG00000283440.1|AL139352.1|lncRNA|chr20:44658994:44659181:-	0	-
#Deleted in new
chr20	44694891	44695507	ENSG00000244558.5|KCNK15-AS1|lncRNA|chr20:44694891:44695507:-	0	-
#Deleted in new
chr20	44695075	44695507	ENSG00000244558.5|KCNK15-AS1|lncRNA|chr20:44695075:44695507:-	0	-
#Deleted in new
chr20	44695201	44695507	ENSG00000244558.5|KCNK15-AS1|lncRNA|chr20:44695201:44695507:-	0	-
#Deleted in new
chr20	44695390	44695507	ENSG00000132832.10|LINC01260|lncRNA|chr20:44695390:44695507:-	0	-
#Deleted in new
chr20	44696002	44696084	ENSG00000244558.5|KCNK15-AS1|lncRNA|chr20:44696002:44696084:-	0	-
#Deleted in new
chr20	44696002	44696096	ENSG00000132832.10|LINC01260|lncRNA|chr20:44696002:44696096:-	0	-
#Deleted in new
chr20	44711861	44711988	ENSG00000244558.5|KCNK15-AS1|lncRNA|chr20:44711861:44711988:-	0	-
#Deleted in new
chr20	44737510	44737570	ENSG00000244558.5|KCNK15-AS1|lncRNA|chr20:44737510:44737570:-	0	-
#Deleted in new
chr20	44936893	44936976	ENSG00000101104.12|PABPC1L|pc|chr20:44936893:44936976:+	0	+
#Deleted in new
chr20	44963793	44965448	ENSG00000227477.1|STK4-AS1|lncRNA|chr20:44963793:44965448:-	0	-
#Deleted in new
chr20	44963799	44964250	ENSG00000227477.1|STK4-AS1|lncRNA|chr20:44963799:44964250:-	0	-
#Deleted in new
chr20	44965402	44965448	ENSG00000227477.1|STK4-AS1|lncRNA|chr20:44965402:44965448:-	0	-
#Deleted in new
chr20	44965561	44965617	ENSG00000227477.1|STK4-AS1|lncRNA|chr20:44965561:44965617:-	0	-
#Deleted in new
chr20	44965561	44965685	ENSG00000227477.1|STK4-AS1|lncRNA|chr20:44965561:44965685:-	0	-
#Partially deleted in new
chr20	44974099	44975684	ENSG00000101109.11|STK4|pc|chr20:44974099:44975684:+	0	+
#Deleted in new
chr20	45174875	45175001	ENSG00000124102.4|PI3|pc|chr20:45174875:45175001:+	0	+
#Deleted in new
chr20	45175860	45176136	ENSG00000124102.4|PI3|pc|chr20:45175860:45176136:+	0	+
#Deleted in new
chr20	45176369	45176544	ENSG00000124102.4|PI3|pc|chr20:45176369:45176544:+	0	+
#Split in new
chr20	45207373	45208730	ENSG00000124233.11|SEMG1|pc|chr20:45207373:45208730:+	0	+
#Partially deleted in new
chr20	45221708	45223425	ENSG00000124157.6|SEMG2|pc|chr20:45221708:45223425:+	0	+
#Deleted in new
chr20	4525073	4525200	ENSG00000238282.1|AL121781.1|lncRNA|chr20:4525073:4525200:+	0	+
#Deleted in new
chr20	45399689	45399751	ENSG00000254806.5|SYS1-DBNDD2|pc|chr20:45399689:45399751:+	0	+
#Partially deleted in new
chr20	45423103	45424381	ENSG00000124155.17|PIGT|pc|chr20:45423103:45424381:+	0	+
#Partially deleted in new
chr20	45424495	45425100	ENSG00000124155.17|PIGT|pc|chr20:45424495:45425100:+	0	+
#Partially deleted in new
chr20	45424495	45425123	ENSG00000124155.17|PIGT|pc|chr20:45424495:45425123:+	0	+
#Partially deleted in new
chr20	45425915	45427545	ENSG00000124155.17|PIGT|pc|chr20:45425915:45427545:+	0	+
#Partially deleted in new
chr20	45427421	45427545	ENSG00000124155.17|PIGT|pc|chr20:45427421:45427545:+	0	+
#Partially deleted in new
chr20	45427426	45427545	ENSG00000124155.17|PIGT|pc|chr20:45427426:45427545:+	0	+
#Deleted in new
chr20	45431171	45431284	ENSG00000124155.17|PIGT|pc|chr20:45431171:45431284:+	0	+
#Deleted in new
chr20	45431171	45431335	ENSG00000124155.17|PIGT|pc|chr20:45431171:45431335:+	0	+
#Deleted in new
chr20	45435271	45435971	ENSG00000277022.1|AL031663.3|lncRNA|chr20:45435271:45435971:-	0	-
#Deleted in new
chr20	45441910	45443250	ENSG00000124155.17|PIGT|pc|chr20:45441910:45443250:+	0	+
#Partially deleted in new
chr20	45445430	45448580	ENSG00000124155.17|PIGT|pc|chr20:45445430:45448580:+	0	+
#Partially deleted in new
chr20	45446642	45447816	ENSG00000124155.17|PIGT|pc|chr20:45446642:45447816:+	0	+
#Partially deleted in new
chr20	45448243	45452177	ENSG00000124155.17|PIGT|pc|chr20:45448243:45452177:+	0	+
#Deleted in new
chr20	45451934	45452177	ENSG00000124155.17|PIGT|pc|chr20:45451934:45452177:+	0	+
#Deleted in new
chr20	45451997	45452108	ENSG00000124155.17|PIGT|pc|chr20:45451997:45452108:+	0	+
#Deleted in new
chr20	45451997	45452177	ENSG00000124155.17|PIGT|pc|chr20:45451997:45452177:+	0	+
#Deleted in new
chr20	45456608	45456907	ENSG00000124155.17|PIGT|pc|chr20:45456608:45456907:+	0	+
#Deleted in new
chr20	45456608	45456926	ENSG00000124155.17|PIGT|pc|chr20:45456608:45456926:+	0	+
#Deleted in new
chr20	45456608	45456934	ENSG00000124155.17|PIGT|pc|chr20:45456608:45456934:+	0	+
#Deleted in new
chr20	45489991	45490248	ENSG00000237464.1|AL031663.2|lncRNA|chr20:45489991:45490248:+	0	+
#Partially deleted in new
chr20	45536985	45537550	ENSG00000249139.1|EPPIN-WFDC6|pc|chr20:45536985:45537550:-	0	-
#Deleted in new
chr20	45551152	45551612	ENSG00000158901.11|WFDC8|pc|chr20:45551152:45551612:-	0	-
#Deleted in new
chr20	45648562	45648739	ENSG00000180083.10|WFDC11|pc|chr20:45648562:45648739:-	0	-
#Deleted in new
chr20	45648563	45648739	ENSG00000180083.10|WFDC11|pc|chr20:45648563:45648739:-	0	-
#Deleted in new
chr20	45667087	45667169	ENSG00000180083.10|WFDC11|pc|chr20:45667087:45667169:-	0	-
#Deleted in new
chr20	45667087	45667177	ENSG00000180083.10|WFDC11|pc|chr20:45667087:45667177:-	0	-
#Deleted in new
chr20	45670177	45670239	ENSG00000180083.10|WFDC11|pc|chr20:45670177:45670239:-	0	-
#Deleted in new
chr20	45670181	45670270	ENSG00000180083.10|WFDC11|pc|chr20:45670181:45670270:-	0	-
#Partially deleted in new
chr20	45704917	45705019	ENSG00000182931.9|WFDC10B|pc|chr20:45704917:45705019:-	0	-
#Deleted in new
chr20	45707857	45708817	ENSG00000168634.4|WFDC13|pc|chr20:45707857:45708817:+	0	+
#Deleted in new
chr20	45758391	45758431	ENSG00000124116.18|WFDC3|pc|chr20:45758391:45758431:-	0	-
#Partially deleted in new
chr20	45813005	45813290	ENSG00000175063.16|UBE2C|pc|chr20:45813005:45813290:+	0	+
#Deleted in new
chr20	45838267	45838318	ENSG00000124104.18|SNX21|pc|chr20:45838267:45838318:+	0	+
#Deleted in new
chr20	45838267	45838360	ENSG00000124104.18|SNX21|pc|chr20:45838267:45838360:+	0	+
#Deleted in new
chr20	45853419	45853984	ENSG00000101473.16|ACOT8|pc|chr20:45853419:45853984:-	0	-
#Deleted in new
chr20	45853421	45853979	ENSG00000101473.16|ACOT8|pc|chr20:45853421:45853979:-	0	-
#Deleted in new
chr20	45853922	45853979	ENSG00000101473.16|ACOT8|pc|chr20:45853922:45853979:-	0	-
#Deleted in new
chr20	45853922	45853984	ENSG00000101473.16|ACOT8|pc|chr20:45853922:45853984:-	0	-
#Deleted in new
chr20	45884984	45885265	ENSG00000168612.4|ZSWIM1|pc|chr20:45884984:45885265:+	0	+
#Partially deleted in new
chr20	45966866	45967634	ENSG00000198026.7|ZNF335|pc|chr20:45966866:45967634:-	0	-
#Deleted in new
chr20	46019730	46019848	ENSG00000204044.6|SLC12A5-AS1|lncRNA|chr20:46019730:46019848:-	0	-
#Deleted in new
chr20	46020618	46020905	ENSG00000204044.6|SLC12A5-AS1|lncRNA|chr20:46020618:46020905:-	0	-
#Deleted in new
chr20	46038223	46038330	ENSG00000124140.13|SLC12A5|pc|chr20:46038223:46038330:+	0	+
#Deleted in new
chr20	46127206	46127289	ENSG00000101017.13|CD40|pc|chr20:46127206:46127289:+	0	+
#Deleted in new
chr20	46363085	46363174	ENSG00000080189.14|SLC35C2|pc|chr20:46363085:46363174:-	0	-
#Deleted in new
chr20	46364039	46364361	ENSG00000080189.14|SLC35C2|pc|chr20:46364039:46364361:-	0	-
#Deleted in new
chr20	46364370	46364381	ENSG00000080189.14|SLC35C2|pc|chr20:46364370:46364381:-	0	-
#Deleted in new
chr20	46364370	46364390	ENSG00000080189.14|SLC35C2|pc|chr20:46364370:46364390:-	0	-
#Deleted in new
chr20	46364370	46364395	ENSG00000080189.14|SLC35C2|pc|chr20:46364370:46364395:-	0	-
#Deleted in new
chr20	46364370	46364401	ENSG00000080189.14|SLC35C2|pc|chr20:46364370:46364401:-	0	-
#Deleted in new
chr20	46364370	46364404	ENSG00000080189.14|SLC35C2|pc|chr20:46364370:46364404:-	0	-
#Deleted in new
chr20	46364370	46364458	ENSG00000080189.14|SLC35C2|pc|chr20:46364370:46364458:-	0	-
#Deleted in new
chr20	46364550	46364720	ENSG00000273828.1|AL133227.1|lncRNA|chr20:46364550:46364720:+	0	+
#Deleted in new
chr20	46398696	46398771	ENSG00000062598.17|ELMO2|pc|chr20:46398696:46398771:-	0	-
#Partially deleted in new
chr20	46432893	46432985	ENSG00000062598.17|ELMO2|pc|chr20:46432893:46432985:-	0	-
#Deleted in new
chr20	46459218	46459622	ENSG00000283757.1|AL031686.1|lncRNA|chr20:46459218:46459622:-	0	-
#Deleted in new
chr20	46474500	46474688	ENSG00000283757.1|AL031686.1|lncRNA|chr20:46474500:46474688:-	0	-
#Deleted in new
chr20	46476231	46476325	ENSG00000283757.1|AL031686.1|lncRNA|chr20:46476231:46476325:-	0	-
#Deleted in new
chr20	46481049	46481357	ENSG00000283757.1|AL031686.1|lncRNA|chr20:46481049:46481357:-	0	-
#Deleted in new
chr20	46485528	46485668	ENSG00000283757.1|AL031686.1|lncRNA|chr20:46485528:46485668:-	0	-
#Partially deleted in new
chr20	46492681	46492917	ENSG00000283757.1|AL031686.1|lncRNA|chr20:46492681:46492917:-	0	-
#Deleted in new
chr20	46496710	46496731	ENSG00000283757.1|AL031686.1|lncRNA|chr20:46496710:46496731:-	0	-
#Deleted in new
chr20	46506306	46506458	ENSG00000198185.11|ZNF334|pc|chr20:46506306:46506458:-	0	-
#Deleted in new
chr20	46506306	46506638	ENSG00000198185.11|ZNF334|pc|chr20:46506306:46506638:-	0	-
#Deleted in new
chr20	46509604	46509622	ENSG00000198185.11|ZNF334|pc|chr20:46509604:46509622:-	0	-
#Deleted in new
chr20	46509604	46509751	ENSG00000198185.11|ZNF334|pc|chr20:46509604:46509751:-	0	-
#Deleted in new
chr20	46585347	46585743	ENSG00000158296.13|SLC13A3|pc|chr20:46585347:46585743:-	0	-
#Deleted in new
chr20	46608708	46609057	ENSG00000158296.13|SLC13A3|pc|chr20:46608708:46609057:-	0	-
#Deleted in new
chr20	46670042	46670139	ENSG00000158296.13|SLC13A3|pc|chr20:46670042:46670139:-	0	-
#Deleted in new
chr20	46673663	46673778	ENSG00000158296.13|SLC13A3|pc|chr20:46673663:46673778:-	0	-
#Deleted in new
chr20	46675946	46676075	ENSG00000158296.13|SLC13A3|pc|chr20:46675946:46676075:-	0	-
#Partially deleted in new
chr20	46681675	46682375	ENSG00000273893.1|AL133520.1|lncRNA|chr20:46681675:46682375:-	0	-
#Deleted in new
chr20	46684395	46684467	ENSG00000158296.13|SLC13A3|pc|chr20:46684395:46684467:-	0	-
#Partially deleted in new
chr20	46689658	46690289	ENSG00000271784.1|AL031055.1|lncRNA|chr20:46689658:46690289:+	0	+
#Deleted in new
chr20	46709486	46709740	ENSG00000197496.5|SLC2A10|pc|chr20:46709486:46709740:+	0	+
#Deleted in new
chr20	46709698	46709740	ENSG00000197496.5|SLC2A10|pc|chr20:46709698:46709740:+	0	+
#Deleted in new
chr20	46709982	46710437	ENSG00000197496.5|SLC2A10|pc|chr20:46709982:46710437:+	0	+
#Deleted in new
chr20	46714466	46714622	ENSG00000197496.5|SLC2A10|pc|chr20:46714466:46714622:+	0	+
#Deleted in new
chr20	4686542	4686736	ENSG00000171867.16|PRNP|pc|chr20:4686542:4686736:+	0	+
#Deleted in new
chr20	47391928	47392097	ENSG00000224565.1|LINC01754|lncRNA|chr20:47391928:47392097:-	0	-
#Deleted in new
chr20	47397148	47397345	ENSG00000224565.1|LINC01754|lncRNA|chr20:47397148:47397345:-	0	-
#Partially deleted in new
chr20	4740139	4740668	ENSG00000180259.9|PRNT|pc|chr20:4740139:4740668:-	0	-
#Deleted in new
chr20	4740376	4740668	ENSG00000180259.9|PRNT|pc|chr20:4740376:4740668:-	0	-
#Deleted in new
chr20	4740599	4740668	ENSG00000180259.9|PRNT|pc|chr20:4740599:4740668:-	0	-
#Deleted in new
chr20	47412069	47412327	ENSG00000224565.1|LINC01754|lncRNA|chr20:47412069:47412327:-	0	-
#Deleted in new
chr20	47622957	47623020	ENSG00000124151.18|NCOA3|pc|chr20:47622957:47623020:+	0	+
#Partially deleted in new
chr20	47628432	47628790	ENSG00000124151.18|NCOA3|pc|chr20:47628432:47628790:+	0	+
#Deleted in new
chr20	47706512	47706903	ENSG00000196562.14|SULF2|pc|chr20:47706512:47706903:-	0	-
#Partially deleted in new
chr20	47950798	47950924	ENSG00000234967.1|AL357558.2|lncRNA|chr20:47950798:47950924:+	0	+
#Deleted in new
chr20	47951756	47952055	ENSG00000234967.1|AL357558.2|lncRNA|chr20:47951756:47952055:+	0	+
#Deleted in new
chr20	47958021	47958136	ENSG00000228503.1|AL357558.1|lncRNA|chr20:47958021:47958136:+	0	+
#Deleted in new
chr20	47958262	47958603	ENSG00000228503.1|AL357558.1|lncRNA|chr20:47958262:47958603:+	0	+
#Deleted in new
chr20	47980487	47980778	ENSG00000237423.1|LINC01522|lncRNA|chr20:47980487:47980778:-	0	-
#Deleted in new
chr20	47983403	47983521	ENSG00000229522.1|LINC01523|lncRNA|chr20:47983403:47983521:+	0	+
#Deleted in new
chr20	47983981	47984313	ENSG00000229522.1|LINC01523|lncRNA|chr20:47983981:47984313:+	0	+
#Deleted in new
chr20	47988606	47988744	ENSG00000237423.1|LINC01522|lncRNA|chr20:47988606:47988744:-	0	-
#Deleted in new
chr20	48073868	48074188	ENSG00000276923.1|AL139351.1|lncRNA|chr20:48073868:48074188:+	0	+
#Deleted in new
chr20	48359949	48360150	ENSG00000235621.8|LINC00494|lncRNA|chr20:48359949:48360150:+	0	+
#Deleted in new
chr20	48360011	48360150	ENSG00000235621.8|LINC00494|lncRNA|chr20:48360011:48360150:+	0	+
#Deleted in new
chr20	48360605	48360904	ENSG00000235621.8|LINC00494|lncRNA|chr20:48360605:48360904:+	0	+
#Deleted in new
chr20	48364888	48365197	ENSG00000235621.8|LINC00494|lncRNA|chr20:48364888:48365197:+	0	+
#Deleted in new
chr20	48366473	48366633	ENSG00000235621.8|LINC00494|lncRNA|chr20:48366473:48366633:+	0	+
#Deleted in new
chr20	48366735	48367059	ENSG00000235621.8|LINC00494|lncRNA|chr20:48366735:48367059:+	0	+
#Split in new
chr20	48368079	48370629	ENSG00000235621.8|LINC00494|lncRNA|chr20:48368079:48370629:+	0	+
#Deleted in new
chr20	48383322	48383470	ENSG00000236874.1|AL137078.1|lncRNA|chr20:48383322:48383470:-	0	-
#Deleted in new
chr20	48384639	48384895	ENSG00000236874.1|AL137078.1|lncRNA|chr20:48384639:48384895:-	0	-
#Deleted in new
chr20	48409568	48409578	ENSG00000274261.1|AL137078.2|lncRNA|chr20:48409568:48409578:+	0	+
#Deleted in new
chr20	48410446	48410716	ENSG00000274261.1|AL137078.2|lncRNA|chr20:48410446:48410716:+	0	+
#Deleted in new
chr20	48471307	48471486	ENSG00000281365.1|AL049541.1|lncRNA|chr20:48471307:48471486:+	0	+
#Deleted in new
chr20	48471951	48472414	ENSG00000281365.1|AL049541.1|lncRNA|chr20:48471951:48472414:+	0	+
#Deleted in new
chr20	48849434	48849458	ENSG00000278231.1|AL133342.1|lncRNA|chr20:48849434:48849458:-	0	-
#Deleted in new
chr20	49040462	49040610	ENSG00000227431.5|CSE1L-AS1|lncRNA|chr20:49040462:49040610:-	0	-
#Deleted in new
chr20	49045859	49046044	ENSG00000227431.5|CSE1L-AS1|lncRNA|chr20:49045859:49046044:-	0	-
#Deleted in new
chr20	49158436	49158497	ENSG00000124214.19|STAU1|pc|chr20:49158436:49158497:-	0	-
#Deleted in new
chr20	49158938	49159146	ENSG00000124214.19|STAU1|pc|chr20:49158938:49159146:-	0	-
#Deleted in new
chr20	49179121	49179244	ENSG00000124214.19|STAU1|pc|chr20:49179121:49179244:-	0	-
#Deleted in new
chr20	49231022	49231115	ENSG00000124228.14|DDX27|pc|chr20:49231022:49231115:+	0	+
#Partially deleted in new
chr20	49237945	49239300	ENSG00000124201.14|ZNFX1|pc|chr20:49237945:49239300:-	0	-
#Deleted in new
chr20	49244584	49244752	ENSG00000124201.14|ZNFX1|pc|chr20:49244584:49244752:-	0	-
#Deleted in new
chr20	49280902	49280964	ENSG00000177410.12|ZFAS1|lncRNA|chr20:49280902:49280964:+	0	+
#Deleted in new
chr20	49281751	49281818	ENSG00000177410.12|ZFAS1|lncRNA|chr20:49281751:49281818:+	0	+
#Deleted in new
chr20	49289044	49289260	ENSG00000177410.12|ZFAS1|lncRNA|chr20:49289044:49289260:+	0	+
#Deleted in new
chr20	49290887	49291148	ENSG00000177410.12|ZFAS1|lncRNA|chr20:49290887:49291148:+	0	+
#Deleted in new
chr20	49293393	49298114	ENSG00000158445.9|KCNB1|pc|chr20:49293393:49298114:-	0	-
#Deleted in new
chr20	49295402	49295594	ENSG00000177410.12|ZFAS1|lncRNA|chr20:49295402:49295594:+	0	+
#Deleted in new
chr20	49295402	49295738	ENSG00000177410.12|ZFAS1|lncRNA|chr20:49295402:49295738:+	0	+
#Deleted in new
chr20	49298106	49298114	ENSG00000158445.9|KCNB1|pc|chr20:49298106:49298114:-	0	-
#Deleted in new
chr20	49299314	49299383	ENSG00000158445.9|KCNB1|pc|chr20:49299314:49299383:-	0	-
#Deleted in new
chr20	49310512	49310799	ENSG00000158445.9|KCNB1|pc|chr20:49310512:49310799:-	0	-
#Deleted in new
chr20	49386862	49387005	ENSG00000158445.9|KCNB1|pc|chr20:49386862:49387005:-	0	-
#Deleted in new
chr20	49451332	49451417	ENSG00000158445.9|KCNB1|pc|chr20:49451332:49451417:-	0	-
#Deleted in new
chr20	50041376	50041504	ENSG00000231265.1|TRERNA1|lncRNA|chr20:50041376:50041504:-	0	-
#Deleted in new
chr20	50084379	50084384	ENSG00000244687.11|UBE2V1|pc|chr20:50084379:50084384:-	0	-
#Deleted in new
chr20	50084483	50084506	ENSG00000244687.11|UBE2V1|pc|chr20:50084483:50084506:-	0	-
#Deleted in new
chr20	50084740	50084751	ENSG00000244687.11|UBE2V1|pc|chr20:50084740:50084751:-	0	-
#Deleted in new
chr20	50094914	50095382	ENSG00000244687.11|UBE2V1|pc|chr20:50094914:50095382:-	0	-
#Deleted in new
chr20	50094943	50095382	ENSG00000244687.11|UBE2V1|pc|chr20:50094943:50095382:-	0	-
#Deleted in new
chr20	50098881	50098964	ENSG00000244687.11|UBE2V1|pc|chr20:50098881:50098964:-	0	-
#Deleted in new
chr20	50098881	50098981	ENSG00000244687.11|UBE2V1|pc|chr20:50098881:50098981:-	0	-
#Deleted in new
chr20	5010181	5010270	ENSG00000089057.14|SLC23A2|pc|chr20:5010181:5010270:-	0	-
#Deleted in new
chr20	5010181	5010293	ENSG00000089057.14|SLC23A2|pc|chr20:5010181:5010293:-	0	-
#Deleted in new
chr20	50108972	50109111	ENSG00000244687.11|UBE2V1|pc|chr20:50108972:50109111:-	0	-
#Deleted in new
chr20	50114944	50115038	ENSG00000244687.11|UBE2V1|pc|chr20:50114944:50115038:-	0	-
#Partially deleted in new
chr20	50118253	50125179	ENSG00000240849.10|TMEM189|pc|chr20:50118253:50125179:-	0	-
#Partially deleted in new
chr20	50131019	50131132	ENSG00000240849.10|TMEM189|pc|chr20:50131019:50131132:-	0	-
#Deleted in new
chr20	50162764	50163095	ENSG00000237595.3|AL161937.2|lncRNA|chr20:50162764:50163095:-	0	-
#Deleted in new
chr20	50163463	50164123	ENSG00000237595.3|AL161937.2|lncRNA|chr20:50163463:50164123:-	0	-
#Deleted in new
chr20	50166029	50166101	ENSG00000237595.3|AL161937.2|lncRNA|chr20:50166029:50166101:-	0	-
#Deleted in new
chr20	50166029	50166102	ENSG00000237595.3|AL161937.2|lncRNA|chr20:50166029:50166102:-	0	-
#Deleted in new
chr20	50166361	50166636	ENSG00000234698.1|AL161937.1|lncRNA|chr20:50166361:50166636:+	0	+
#Deleted in new
chr20	50169345	50169495	ENSG00000234698.1|AL161937.1|lncRNA|chr20:50169345:50169495:+	0	+
#Deleted in new
chr20	50169345	50169565	ENSG00000234698.1|AL161937.1|lncRNA|chr20:50169345:50169565:+	0	+
#Deleted in new
chr20	50171621	50171742	ENSG00000234698.1|AL161937.1|lncRNA|chr20:50171621:50171742:+	0	+
#Deleted in new
chr20	50172549	50172788	ENSG00000231742.5|LINC01273|lncRNA|chr20:50172549:50172788:+	0	+
#Deleted in new
chr20	50172589	50172788	ENSG00000231742.5|LINC01273|lncRNA|chr20:50172589:50172788:+	0	+
#Deleted in new
chr20	50172922	50173017	ENSG00000231742.5|LINC01273|lncRNA|chr20:50172922:50173017:+	0	+
#Deleted in new
chr20	50173201	50173370	ENSG00000231742.5|LINC01273|lncRNA|chr20:50173201:50173370:+	0	+
#Deleted in new
chr20	50176280	50176671	ENSG00000231742.5|LINC01273|lncRNA|chr20:50176280:50176671:+	0	+
#Partially deleted in new
chr20	50184597	50186420	ENSG00000277449.1|CEBPB-AS1|lncRNA|chr20:50184597:50186420:-	0	-
#Deleted in new
chr20	50187012	50187127	ENSG00000277449.1|CEBPB-AS1|lncRNA|chr20:50187012:50187127:-	0	-
#Deleted in new
chr20	50278176	50278415	ENSG00000224397.5|SMIM25|lncRNA|chr20:50278176:50278415:+	0	+
#Deleted in new
chr20	50278176	50278427	ENSG00000224397.5|SMIM25|lncRNA|chr20:50278176:50278427:+	0	+
#Deleted in new
chr20	50310710	50311249	ENSG00000233077.1|LINC01271|lncRNA|chr20:50310710:50311249:-	0	-
#Partially deleted in new
chr20	50310973	50311706	ENSG00000203999.8|LINC01270|lncRNA|chr20:50310973:50311706:+	0	+
#Deleted in new
chr20	5045760	5046276	ENSG00000277087.1|AL121890.3|lncRNA|chr20:5045760:5046276:-	0	-
#Deleted in new
chr20	5049856	5050321	ENSG00000276768.1|AL121890.2|lncRNA|chr20:5049856:5050321:-	0	-
#Deleted in new
chr20	50577493	50578041	ENSG00000232043.1|AL133230.1|lncRNA|chr20:50577493:50578041:-	0	-
#Partially deleted in new
chr20	50596977	50597710	ENSG00000042062.11|RIPOR3|pc|chr20:50596977:50597710:-	0	-
#Deleted in new
chr20	50645470	50645493	ENSG00000234693.1|AL353653.1|lncRNA|chr20:50645470:50645493:+	0	+
#Deleted in new
chr20	50653201	50653222	ENSG00000234693.1|AL353653.1|lncRNA|chr20:50653201:50653222:+	0	+
#Deleted in new
chr20	50653945	50653995	ENSG00000234693.1|AL353653.1|lncRNA|chr20:50653945:50653995:+	0	+
#Deleted in new
chr20	5067966	5068154	ENSG00000277425.1|AL121890.4|lncRNA|chr20:5067966:5068154:-	0	-
#Deleted in new
chr20	5068231	5068259	ENSG00000089063.14|TMEM230|pc|chr20:5068231:5068259:-	0	-
#Deleted in new
chr20	50756684	50756795	ENSG00000124171.8|PARD6B|pc|chr20:50756684:50756795:+	0	+
#Deleted in new
chr20	50832708	50833020	ENSG00000124243.17|BCAS4|pc|chr20:50832708:50833020:+	0	+
#Deleted in new
chr20	50875996	50876093	ENSG00000124243.17|BCAS4|pc|chr20:50875996:50876093:+	0	+
#Partially deleted in new
chr20	50876485	50877177	ENSG00000124243.17|BCAS4|pc|chr20:50876485:50877177:+	0	+
#Partially deleted in new
chr20	50876485	50882676	ENSG00000124243.17|BCAS4|pc|chr20:50876485:50882676:+	0	+
#Deleted in new
chr20	50904765	50904849	ENSG00000101126.15|ADNP|pc|chr20:50904765:50904849:-	0	-
#Deleted in new
chr20	50941104	50941209	ENSG00000000419.12|DPM1|pc|chr20:50941104:50941209:-	0	-
#Deleted in new
chr20	50941128	50941209	ENSG00000000419.12|DPM1|pc|chr20:50941128:50941209:-	0	-
#Deleted in new
chr20	50944356	50944717	ENSG00000259456.3|ADNP-AS1|lncRNA|chr20:50944356:50944717:+	0	+
#Deleted in new
chr20	50944356	50945134	ENSG00000259456.3|ADNP-AS1|lncRNA|chr20:50944356:50945134:+	0	+
#Deleted in new
chr20	50999369	50999479	ENSG00000232358.1|AL050404.1|lncRNA|chr20:50999369:50999479:+	0	+
#Deleted in new
chr20	51007935	51008040	ENSG00000026559.13|KCNG1|pc|chr20:51007935:51008040:-	0	-
#Deleted in new
chr20	510167	510338	ENSG00000101266.17|CSNK2A1|pc|chr20:510167:510338:-	0	-
#Deleted in new
chr20	5111056	5111174	ENSG00000089063.14|TMEM230|pc|chr20:5111056:5111174:-	0	-
#Deleted in new
chr20	5111499	5111605	ENSG00000089063.14|TMEM230|pc|chr20:5111499:5111605:-	0	-
#Deleted in new
chr20	5111763	5111808	ENSG00000089063.14|TMEM230|pc|chr20:5111763:5111808:-	0	-
#Deleted in new
chr20	51792758	51792926	ENSG00000101115.12|SALL4|pc|chr20:51792758:51792926:-	0	-
#Deleted in new
chr20	51792758	51793078	ENSG00000101115.12|SALL4|pc|chr20:51792758:51793078:-	0	-
#Partially deleted in new
chr20	51831796	51833969	ENSG00000227964.1|LINC01429|lncRNA|chr20:51831796:51833969:-	0	-
#Deleted in new
chr20	51842684	51842749	ENSG00000227964.1|LINC01429|lncRNA|chr20:51842684:51842749:-	0	-
#Deleted in new
chr20	51862824	51862912	ENSG00000227964.1|LINC01429|lncRNA|chr20:51862824:51862912:-	0	-
#Deleted in new
chr20	52051662	52052132	ENSG00000020256.19|ZFP64|pc|chr20:52051662:52052132:-	0	-
#Partially deleted in new
chr20	52088959	52089067	ENSG00000020256.19|ZFP64|pc|chr20:52088959:52089067:-	0	-
#Partially deleted in new
chr20	52096807	52097106	ENSG00000020256.19|ZFP64|pc|chr20:52096807:52097106:-	0	-
#Deleted in new
chr20	52175926	52176037	ENSG00000020256.19|ZFP64|pc|chr20:52175926:52176037:-	0	-
#Deleted in new
chr20	52204195	52204308	ENSG00000020256.19|ZFP64|pc|chr20:52204195:52204308:-	0	-
#Deleted in new
chr20	52210644	52210740	ENSG00000234948.1|LINC01524|lncRNA|chr20:52210644:52210740:+	0	+
#Deleted in new
chr20	52234768	52234932	ENSG00000234948.1|LINC01524|lncRNA|chr20:52234768:52234932:+	0	+
#Deleted in new
chr20	52304954	52304991	ENSG00000234948.1|LINC01524|lncRNA|chr20:52304954:52304991:+	0	+
#Deleted in new
chr20	52355321	52355359	ENSG00000234948.1|LINC01524|lncRNA|chr20:52355321:52355359:+	0	+
#Deleted in new
chr20	52452318	52452527	ENSG00000225785.1|AL109610.1|lncRNA|chr20:52452318:52452527:-	0	-
#Deleted in new
chr20	52455577	52455619	ENSG00000225785.1|AL109610.1|lncRNA|chr20:52455577:52455619:-	0	-
#Deleted in new
chr20	52487921	52488262	ENSG00000232465.1|AL049765.1|lncRNA|chr20:52487921:52488262:-	0	-
#Deleted in new
chr20	52620837	52621146	ENSG00000234948.1|LINC01524|lncRNA|chr20:52620837:52621146:+	0	+
#Deleted in new
chr20	52621861	52622000	ENSG00000234948.1|LINC01524|lncRNA|chr20:52621861:52622000:+	0	+
#Partially deleted in new
chr20	52646489	52650431	ENSG00000234948.1|LINC01524|lncRNA|chr20:52646489:52650431:+	0	+
#Deleted in new
chr20	52674384	52674511	ENSG00000232294.5|AL031674.1|lncRNA|chr20:52674384:52674511:+	0	+
#Deleted in new
chr20	52674410	52674511	ENSG00000232294.5|AL031674.1|lncRNA|chr20:52674410:52674511:+	0	+
#Deleted in new
chr20	52687948	52688165	ENSG00000232294.5|AL031674.1|lncRNA|chr20:52687948:52688165:+	0	+
#Deleted in new
chr20	52690521	52690580	ENSG00000232294.5|AL031674.1|lncRNA|chr20:52690521:52690580:+	0	+
#Deleted in new
chr20	52690521	52690608	ENSG00000232294.5|AL031674.1|lncRNA|chr20:52690521:52690608:+	0	+
#Deleted in new
chr20	52690521	52690614	ENSG00000232294.5|AL031674.1|lncRNA|chr20:52690521:52690614:+	0	+
#Deleted in new
chr20	52690740	52690929	ENSG00000232294.5|AL031674.1|lncRNA|chr20:52690740:52690929:+	0	+
#Deleted in new
chr20	527932	528049	ENSG00000101266.17|CSNK2A1|pc|chr20:527932:528049:-	0	-
#Deleted in new
chr20	52858337	52858507	ENSG00000232286.1|AL121902.1|lncRNA|chr20:52858337:52858507:-	0	-
#Partially deleted in new
chr20	53178137	53179550	ENSG00000223492.1|AL391097.1|lncRNA|chr20:53178137:53179550:-	0	-
#Deleted in new
chr20	53185282	53185676	ENSG00000182463.15|TSHZ2|pc|chr20:53185282:53185676:+	0	+
#Deleted in new
chr20	53185645	53185676	ENSG00000182463.15|TSHZ2|pc|chr20:53185645:53185676:+	0	+
#Deleted in new
chr20	53198179	53198307	ENSG00000227705.1|AL391097.2|lncRNA|chr20:53198179:53198307:-	0	-
#Deleted in new
chr20	53273375	53273381	ENSG00000271774.1|AL109930.1|lncRNA|chr20:53273375:53273381:-	0	-
#Deleted in new
chr20	53401132	53401234	ENSG00000231703.2|AL354993.1|lncRNA|chr20:53401132:53401234:-	0	-
#Deleted in new
chr20	53412559	53412910	ENSG00000231703.2|AL354993.1|lncRNA|chr20:53412559:53412910:-	0	-
#Deleted in new
chr20	53455255	53455440	ENSG00000259723.1|AL354993.2|lncRNA|chr20:53455255:53455440:-	0	-
#Deleted in new
chr20	53461468	53461568	ENSG00000259723.1|AL354993.2|lncRNA|chr20:53461468:53461568:-	0	-
#Deleted in new
chr20	53504108	53504314	ENSG00000259723.1|AL354993.2|lncRNA|chr20:53504108:53504314:-	0	-
#Deleted in new
chr20	53552769	53553087	ENSG00000197670.6|AL157838.1|lncRNA|chr20:53552769:53553087:+	0	+
#Deleted in new
chr20	53556637	53556755	ENSG00000197670.6|AL157838.1|lncRNA|chr20:53556637:53556755:+	0	+
#Deleted in new
chr20	53562748	53562867	ENSG00000197670.6|AL157838.1|lncRNA|chr20:53562748:53562867:+	0	+
#Deleted in new
chr20	53570271	53570503	ENSG00000197670.6|AL157838.1|lncRNA|chr20:53570271:53570503:+	0	+
#Deleted in new
chr20	53572647	53572856	ENSG00000197670.6|AL157838.1|lncRNA|chr20:53572647:53572856:+	0	+
#Partially deleted in new
chr20	53574357	53575863	ENSG00000197670.6|AL157838.1|lncRNA|chr20:53574357:53575863:+	0	+
#Deleted in new
chr20	53593755	53593839	ENSG00000171940.13|ZNF217|pc|chr20:53593755:53593839:-	0	-
#Deleted in new
chr20	53608831	53608892	ENSG00000171940.13|ZNF217|pc|chr20:53608831:53608892:-	0	-
#Deleted in new
chr20	53617836	53617998	ENSG00000235415.1|AC005808.1|lncRNA|chr20:53617836:53617998:+	0	+
#Deleted in new
chr20	53634529	53634590	ENSG00000235415.1|AC005808.1|lncRNA|chr20:53634529:53634590:+	0	+
#Deleted in new
chr20	53799822	53799991	ENSG00000225563.1|AC006076.1|lncRNA|chr20:53799822:53799991:-	0	-
#Deleted in new
chr20	53801142	53801318	ENSG00000225563.1|AC006076.1|lncRNA|chr20:53801142:53801318:-	0	-
#Partially deleted in new
chr20	54208834	54208915	ENSG00000101132.9|PFDN4|pc|chr20:54208834:54208915:+	0	+
#Deleted in new
chr20	54224226	54224299	ENSG00000101132.9|PFDN4|pc|chr20:54224226:54224299:+	0	+
#Deleted in new
chr20	54227952	54228052	ENSG00000101132.9|PFDN4|pc|chr20:54227952:54228052:+	0	+
#Partially deleted in new
chr20	5426894	5427216	ENSG00000226995.7|LINC00658|lncRNA|chr20:5426894:5427216:-	0	-
#Deleted in new
chr20	5428482	5428538	ENSG00000226995.7|LINC00658|lncRNA|chr20:5428482:5428538:-	0	-
#Deleted in new
chr20	5428628	5428726	ENSG00000226995.7|LINC00658|lncRNA|chr20:5428628:5428726:-	0	-
#Partially deleted in new
chr20	5433788	5434092	ENSG00000226995.7|LINC00658|lncRNA|chr20:5433788:5434092:-	0	-
#Partially deleted in new
chr20	5433872	5434070	ENSG00000226995.7|LINC00658|lncRNA|chr20:5433872:5434070:-	0	-
#Deleted in new
chr20	5434171	5434405	ENSG00000226995.7|LINC00658|lncRNA|chr20:5434171:5434405:-	0	-
#Deleted in new
chr20	5434270	5434405	ENSG00000226995.7|LINC00658|lncRNA|chr20:5434270:5434405:-	0	-
#Deleted in new
chr20	5434284	5434405	ENSG00000226995.7|LINC00658|lncRNA|chr20:5434284:5434405:-	0	-
#Deleted in new
chr20	5437099	5437273	ENSG00000226995.7|LINC00658|lncRNA|chr20:5437099:5437273:-	0	-
#Deleted in new
chr20	5438209	5438315	ENSG00000226995.7|LINC00658|lncRNA|chr20:5438209:5438315:-	0	-
#Partially deleted in new
chr20	5445503	5445686	ENSG00000226995.7|LINC00658|lncRNA|chr20:5445503:5445686:-	0	-
#Partially deleted in new
chr20	5445503	5445740	ENSG00000226995.7|LINC00658|lncRNA|chr20:5445503:5445740:-	0	-
#Partially deleted in new
chr20	5445503	5445746	ENSG00000226995.7|LINC00658|lncRNA|chr20:5445503:5445746:-	0	-
#Deleted in new
chr20	5446044	5446051	ENSG00000226995.7|LINC00658|lncRNA|chr20:5446044:5446051:-	0	-
#Deleted in new
chr20	5448663	5448714	ENSG00000226995.7|LINC00658|lncRNA|chr20:5448663:5448714:-	0	-
#Partially deleted in new
chr20	54494799	54495154	ENSG00000101134.11|DOK5|pc|chr20:54494799:54495154:+	0	+
#Deleted in new
chr20	54555271	54555557	ENSG00000101134.11|DOK5|pc|chr20:54555271:54555557:+	0	+
#Deleted in new
chr20	5463759	5463837	ENSG00000226995.7|LINC00658|lncRNA|chr20:5463759:5463837:-	0	-
#Deleted in new
chr20	5464786	5464929	ENSG00000226995.7|LINC00658|lncRNA|chr20:5464786:5464929:-	0	-
#Deleted in new
chr20	5472706	5472834	ENSG00000230563.2|AL121757.1|lncRNA|chr20:5472706:5472834:+	0	+
#Partially deleted in new
chr20	5473633	5475182	ENSG00000230563.2|AL121757.1|lncRNA|chr20:5473633:5475182:+	0	+
#Partially deleted in new
chr20	5496066	5501863	ENSG00000205181.5|LINC00654|lncRNA|chr20:5496066:5501863:-	0	-
#Deleted in new
chr20	5499115	5499175	ENSG00000266908.1|AL109935.2|lncRNA|chr20:5499115:5499175:+	0	+
#Deleted in new
chr20	5502546	5502881	ENSG00000266908.1|AL109935.2|lncRNA|chr20:5502546:5502881:+	0	+
#Deleted in new
chr20	5502902	5503083	ENSG00000205181.5|LINC00654|lncRNA|chr20:5502902:5503083:-	0	-
#Deleted in new
chr20	5507874	5508037	ENSG00000225640.1|LINC01729|lncRNA|chr20:5507874:5508037:-	0	-
#Deleted in new
chr20	5508260	5508328	ENSG00000225640.1|LINC01729|lncRNA|chr20:5508260:5508328:-	0	-
#Deleted in new
chr20	5509875	5510002	ENSG00000225640.1|LINC01729|lncRNA|chr20:5509875:5510002:-	0	-
#Deleted in new
chr20	5535263	5535387	ENSG00000235820.1|AL109935.1|lncRNA|chr20:5535263:5535387:+	0	+
#Deleted in new
chr20	5535607	5535889	ENSG00000235820.1|AL109935.1|lncRNA|chr20:5535607:5535889:+	0	+
#Deleted in new
chr20	55408897	55408924	ENSG00000235166.7|LINC01440|lncRNA|chr20:55408897:55408924:+	0	+
#Deleted in new
chr20	55409246	55409334	ENSG00000235166.7|LINC01440|lncRNA|chr20:55409246:55409334:+	0	+
#Deleted in new
chr20	55410036	55410125	ENSG00000235166.7|LINC01440|lncRNA|chr20:55410036:55410125:+	0	+
#Deleted in new
chr20	55411929	55411983	ENSG00000235166.7|LINC01440|lncRNA|chr20:55411929:55411983:+	0	+
#Deleted in new
chr20	55448864	55448969	ENSG00000235166.7|LINC01440|lncRNA|chr20:55448864:55448969:+	0	+
#Deleted in new
chr20	55452336	55452433	ENSG00000235166.7|LINC01440|lncRNA|chr20:55452336:55452433:+	0	+
#Deleted in new
chr20	55466816	55466940	ENSG00000235166.7|LINC01440|lncRNA|chr20:55466816:55466940:+	0	+
#Deleted in new
chr20	5548258	5548381	ENSG00000125772.12|GPCPD1|pc|chr20:5548258:5548381:-	0	-
#Deleted in new
chr20	55504905	55505215	ENSG00000275923.1|AL160413.1|lncRNA|chr20:55504905:55505215:-	0	-
#Deleted in new
chr20	56295966	56296347	ENSG00000230843.1|AL139824.1|lncRNA|chr20:56295966:56296347:-	0	-
#Deleted in new
chr20	56299088	56299160	ENSG00000230843.1|AL139824.1|lncRNA|chr20:56299088:56299160:-	0	-
#Deleted in new
chr20	56388311	56388506	ENSG00000087586.17|AURKA|pc|chr20:56388311:56388506:-	0	-
#Deleted in new
chr20	56388686	56388784	ENSG00000087586.17|AURKA|pc|chr20:56388686:56388784:-	0	-
#Deleted in new
chr20	56390555	56390665	ENSG00000087586.17|AURKA|pc|chr20:56390555:56390665:-	0	-
#Deleted in new
chr20	56396917	56397086	ENSG00000101138.11|CSTF1|pc|chr20:56396917:56397086:+	0	+
#Deleted in new
chr20	56470599	56470751	ENSG00000022277.12|RTFDC1|pc|chr20:56470599:56470751:+	0	+
#Deleted in new
chr20	56470599	56470941	ENSG00000022277.12|RTFDC1|pc|chr20:56470599:56470941:+	0	+
#Deleted in new
chr20	56471613	56471669	ENSG00000022277.12|RTFDC1|pc|chr20:56471613:56471669:+	0	+
#Deleted in new
chr20	56472325	56472415	ENSG00000022277.12|RTFDC1|pc|chr20:56472325:56472415:+	0	+
#Deleted in new
chr20	56504054	56504294	ENSG00000124091.9|GCNT7|pc|chr20:56504054:56504294:-	0	-
#Deleted in new
chr20	56513795	56513837	ENSG00000124091.9|GCNT7|pc|chr20:56513795:56513837:-	0	-
#Deleted in new
chr20	56514084	56514305	ENSG00000124091.9|GCNT7|pc|chr20:56514084:56514305:-	0	-
#Partially deleted in new
chr20	56515693	56516989	ENSG00000022277.12|RTFDC1|pc|chr20:56515693:56516989:+	0	+
#Deleted in new
chr20	56522251	56523499	ENSG00000280387.1|AL109806.1|lncRNA|chr20:56522251:56523499:+	0	+
#Deleted in new
chr20	56577562	56577612	ENSG00000225657.2|LINC01716|lncRNA|chr20:56577562:56577612:+	0	+
#Deleted in new
chr20	56577741	56577950	ENSG00000225657.2|LINC01716|lncRNA|chr20:56577741:56577950:+	0	+
#Deleted in new
chr20	56579390	56579553	ENSG00000225657.2|LINC01716|lncRNA|chr20:56579390:56579553:+	0	+
#Deleted in new
chr20	56580200	56580335	ENSG00000225657.2|LINC01716|lncRNA|chr20:56580200:56580335:+	0	+
#Deleted in new
chr20	56595062	56595130	ENSG00000225657.2|LINC01716|lncRNA|chr20:56595062:56595130:+	0	+
#Deleted in new
chr20	56596053	56596126	ENSG00000225657.2|LINC01716|lncRNA|chr20:56596053:56596126:+	0	+
#Deleted in new
chr20	56596309	56596488	ENSG00000225657.2|LINC01716|lncRNA|chr20:56596309:56596488:+	0	+
#Deleted in new
chr20	56598502	56598621	ENSG00000225657.2|LINC01716|lncRNA|chr20:56598502:56598621:+	0	+
#Deleted in new
chr20	56730396	56730451	ENSG00000231604.2|AL133232.1|lncRNA|chr20:56730396:56730451:+	0	+
#Deleted in new
chr20	56731032	56731460	ENSG00000231604.2|AL133232.1|lncRNA|chr20:56731032:56731460:+	0	+
#Deleted in new
chr20	57105740	57105817	ENSG00000231078.1|AL157414.2|lncRNA|chr20:57105740:57105817:+	0	+
#Deleted in new
chr20	57106088	57106202	ENSG00000231078.1|AL157414.2|lncRNA|chr20:57106088:57106202:+	0	+
#Deleted in new
chr20	57106942	57107128	ENSG00000231078.1|AL157414.2|lncRNA|chr20:57106942:57107128:+	0	+
#Deleted in new
chr20	57114914	57115113	ENSG00000203266.2|AL157414.1|lncRNA|chr20:57114914:57115113:+	0	+
#Deleted in new
chr20	57117114	57117195	ENSG00000203266.2|AL157414.1|lncRNA|chr20:57117114:57117195:+	0	+
#Deleted in new
chr20	57121602	57122092	ENSG00000203266.2|AL157414.1|lncRNA|chr20:57121602:57122092:+	0	+
#Deleted in new
chr20	57177695	57178037	ENSG00000101144.12|BMP7|pc|chr20:57177695:57178037:-	0	-
#Deleted in new
chr20	57214871	57214948	ENSG00000235032.1|BMP7-AS1|lncRNA|chr20:57214871:57214948:+	0	+
#Deleted in new
chr20	57243863	57244034	ENSG00000101144.12|BMP7|pc|chr20:57243863:57244034:-	0	-
#Deleted in new
chr20	57280413	57280485	ENSG00000226308.1|AL122058.1|lncRNA|chr20:57280413:57280485:+	0	+
#Deleted in new
chr20	57282242	57282998	ENSG00000226308.1|AL122058.1|lncRNA|chr20:57282242:57282998:+	0	+
#Deleted in new
chr20	57337738	57337771	ENSG00000054796.12|SPO11|pc|chr20:57337738:57337771:+	0	+
#Deleted in new
chr20	57351509	57351570	ENSG00000101146.12|RAE1|pc|chr20:57351509:57351570:+	0	+
#Deleted in new
chr20	57351543	57351919	ENSG00000101146.12|RAE1|pc|chr20:57351543:57351919:+	0	+
#Deleted in new
chr20	57351576	57351998	ENSG00000101146.12|RAE1|pc|chr20:57351576:57351998:+	0	+
#Deleted in new
chr20	57351890	57351998	ENSG00000101146.12|RAE1|pc|chr20:57351890:57351998:+	0	+
#Partially deleted in new
chr20	57371133	57373738	ENSG00000101146.12|RAE1|pc|chr20:57371133:57373738:+	0	+
#Deleted in new
chr20	57384159	57384915	ENSG00000218018.2|AL109955.1|lncRNA|chr20:57384159:57384915:-	0	-
#Deleted in new
chr20	57495965	57496364	ENSG00000124092.12|CTCFL|pc|chr20:57495965:57496364:-	0	-
#Deleted in new
chr20	57498553	57498701	ENSG00000124092.12|CTCFL|pc|chr20:57498553:57498701:-	0	-
#Deleted in new
chr20	57499553	57500410	ENSG00000124092.12|CTCFL|pc|chr20:57499553:57500410:-	0	-
#Deleted in new
chr20	57506741	57507792	ENSG00000124092.12|CTCFL|pc|chr20:57506741:57507792:-	0	-
#Deleted in new
chr20	57506741	57507843	ENSG00000124092.12|CTCFL|pc|chr20:57506741:57507843:-	0	-
#Deleted in new
chr20	57506741	57507876	ENSG00000124092.12|CTCFL|pc|chr20:57506741:57507876:-	0	-
#Split in new
chr20	57514591	57515834	ENSG00000124092.12|CTCFL|pc|chr20:57514591:57515834:-	0	-
#Duplicated in new
chr20	57515464	57515834	ENSG00000124092.12|CTCFL|pc|chr20:57515464:57515834:-	0	-
#Deleted in new
chr20	5756711	5756848	ENSG00000171984.14|C20orf196|pc|chr20:5756711:5756848:+	0	+
#Deleted in new
chr20	57599694	57600228	ENSG00000227297.1|AL035541.1|lncRNA|chr20:57599694:57600228:-	0	-
#Deleted in new
chr20	57600911	57601200	ENSG00000227297.1|AL035541.1|lncRNA|chr20:57600911:57601200:-	0	-
#Deleted in new
chr20	57603845	57604769	ENSG00000124256.14|ZBP1|pc|chr20:57603845:57604769:-	0	-
#Deleted in new
chr20	57604054	57604769	ENSG00000124256.14|ZBP1|pc|chr20:57604054:57604769:-	0	-
#Deleted in new
chr20	57607060	57607300	ENSG00000124256.14|ZBP1|pc|chr20:57607060:57607300:-	0	-
#Deleted in new
chr20	5765093	5765184	ENSG00000171984.14|C20orf196|pc|chr20:5765093:5765184:+	0	+
#Deleted in new
chr20	57691801	57691830	ENSG00000124225.15|PMEPA1|pc|chr20:57691801:57691830:-	0	-
#Deleted in new
chr20	57700015	57700186	ENSG00000124225.15|PMEPA1|pc|chr20:57700015:57700186:-	0	-
#Partially deleted in new
chr20	57711261	57711366	ENSG00000278709.1|NKILA|lncRNA|chr20:57711261:57711366:+	0	+
#Deleted in new
chr20	57711323	57711536	ENSG00000124225.15|PMEPA1|pc|chr20:57711323:57711536:-	0	-
#Deleted in new
chr20	5773131	5773447	ENSG00000171984.14|C20orf196|pc|chr20:5773131:5773447:+	0	+
#Deleted in new
chr20	57958170	57959660	ENSG00000203971.1|AL354984.1|lncRNA|chr20:57958170:57959660:-	0	-
#Deleted in new
chr20	58003903	58004067	ENSG00000275852.1|LINC01742|lncRNA|chr20:58003903:58004067:+	0	+
#Deleted in new
chr20	58004184	58004648	ENSG00000275852.1|LINC01742|lncRNA|chr20:58004184:58004648:+	0	+
#Deleted in new
chr20	58390127	58390340	ENSG00000124164.15|VAPB|pc|chr20:58390127:58390340:+	0	+
#Deleted in new
chr20	58431032	58431517	ENSG00000124164.15|VAPB|pc|chr20:58431032:58431517:+	0	+
#Deleted in new
chr20	58432346	58432416	ENSG00000124164.15|VAPB|pc|chr20:58432346:58432416:+	0	+
#Deleted in new
chr20	58461828	58461980	ENSG00000198768.10|APCDD1L|pc|chr20:58461828:58461980:-	0	-
#Duplicated in new
chr20	58467105	58467658	ENSG00000198768.10|APCDD1L|pc|chr20:58467105:58467658:-	0	-
#Deleted in new
chr20	58521389	58521551	ENSG00000231290.5|APCDD1L-AS1|lncRNA|chr20:58521389:58521551:+	0	+
#Deleted in new
chr20	58573575	58573824	ENSG00000231290.5|APCDD1L-AS1|lncRNA|chr20:58573575:58573824:+	0	+
#Deleted in new
chr20	58573575	58573970	ENSG00000231290.5|APCDD1L-AS1|lncRNA|chr20:58573575:58573970:+	0	+
#Deleted in new
chr20	58634771	58635738	ENSG00000268941.2|LINC01711|lncRNA|chr20:58634771:58635738:+	0	+
#Deleted in new
chr20	58689130	58689211	ENSG00000215440.11|NPEPL1|pc|chr20:58689130:58689211:+	0	+
#Deleted in new
chr20	58689134	58689211	ENSG00000215440.11|NPEPL1|pc|chr20:58689134:58689211:+	0	+
#Deleted in new
chr20	58691404	58691562	ENSG00000254995.4|STX16-NPEPL1|pc|chr20:58691404:58691562:+	0	+
#Deleted in new
chr20	58691723	58691780	ENSG00000215440.11|NPEPL1|pc|chr20:58691723:58691780:+	0	+
#Deleted in new
chr20	58691723	58691780	ENSG00000254995.4|STX16-NPEPL1|pc|chr20:58691723:58691780:+	0	+
#Deleted in new
chr20	58691723	58691830	ENSG00000215440.11|NPEPL1|pc|chr20:58691723:58691830:+	0	+
#Deleted in new
chr20	58691723	58692206	ENSG00000254995.4|STX16-NPEPL1|pc|chr20:58691723:58692206:+	0	+
#Deleted in new
chr20	58710794	58710915	ENSG00000254419.1|AL139349.1|lncRNA|chr20:58710794:58710915:+	0	+
#Deleted in new
chr20	58711177	58711633	ENSG00000254419.1|AL139349.1|lncRNA|chr20:58711177:58711633:+	0	+
#Deleted in new
chr20	58717363	58717995	ENSG00000215440.11|NPEPL1|pc|chr20:58717363:58717995:+	0	+
#Deleted in new
chr20	58717859	58717995	ENSG00000215440.11|NPEPL1|pc|chr20:58717859:58717995:+	0	+
#Partially deleted in new
chr20	58817131	58817725	ENSG00000268649.5|AL132655.2|lncRNA|chr20:58817131:58817725:-	0	-
#Deleted in new
chr20	58824026	58824073	ENSG00000235590.7|GNAS-AS1|lncRNA|chr20:58824026:58824073:-	0	-
#Deleted in new
chr20	58826024	58826137	ENSG00000235590.7|GNAS-AS1|lncRNA|chr20:58826024:58826137:-	0	-
#Deleted in new
chr20	58826735	58826956	ENSG00000235590.7|GNAS-AS1|lncRNA|chr20:58826735:58826956:-	0	-
#Deleted in new
chr20	58881735	58881798	ENSG00000225806.7|AL121917.1|lncRNA|chr20:58881735:58881798:-	0	-
#Deleted in new
chr20	58881749	58881798	ENSG00000225806.7|AL121917.1|lncRNA|chr20:58881749:58881798:-	0	-
#Partially deleted in new
chr20	58908915	58909216	ENSG00000087460.24|GNAS|pc|chr20:58908915:58909216:+	0	+
#Deleted in new
chr20	59364618	59364773	ENSG00000230352.1|AL035250.2|lncRNA|chr20:59364618:59364773:-	0	-
#Deleted in new
chr20	59515190	59515333	ENSG00000227282.1|AL389889.1|lncRNA|chr20:59515190:59515333:+	0	+
#Deleted in new
chr20	59515616	59516039	ENSG00000227282.1|AL389889.1|lncRNA|chr20:59515616:59516039:+	0	+
#Deleted in new
chr20	59603504	59603606	ENSG00000087495.16|PHACTR3|pc|chr20:59603504:59603606:+	0	+
#Deleted in new
chr20	59626463	59626949	ENSG00000238194.1|AL121908.1|lncRNA|chr20:59626463:59626949:-	0	-
#Deleted in new
chr20	59626480	59626949	ENSG00000238194.1|AL121908.1|lncRNA|chr20:59626480:59626949:-	0	-
#Deleted in new
chr20	59721209	59721438	ENSG00000087495.16|PHACTR3|pc|chr20:59721209:59721438:+	0	+
#Deleted in new
chr20	5972575	5972726	ENSG00000125885.13|MCM8|pc|chr20:5972575:5972726:+	0	+
#Partially deleted in new
chr20	59843454	59845265	ENSG00000087495.16|PHACTR3|pc|chr20:59843454:59845265:+	0	+
#Partially deleted in new
chr20	59885102	59885144	ENSG00000196074.12|SYCP2|pc|chr20:59885102:59885144:-	0	-
#Deleted in new
chr20	5990942	5991468	ENSG00000278719.1|MCM8-AS1|lncRNA|chr20:5990942:5991468:-	0	-
#Deleted in new
chr20	59933230	59933361	ENSG00000196074.12|SYCP2|pc|chr20:59933230:59933361:-	0	-
#Deleted in new
chr20	59933763	59933853	ENSG00000196227.10|FAM217B|pc|chr20:59933763:59933853:+	0	+
#Partially deleted in new
chr20	5994298	5995206	ENSG00000125885.13|MCM8|pc|chr20:5994298:5995206:+	0	+
#Partially deleted in new
chr20	5994298	5998977	ENSG00000125885.13|MCM8|pc|chr20:5994298:5998977:+	0	+
#Deleted in new
chr20	59958426	59958795	ENSG00000124215.16|CDH26|pc|chr20:59958426:59958795:+	0	+
#Deleted in new
chr20	59986013	59986174	ENSG00000124215.16|CDH26|pc|chr20:59986013:59986174:+	0	+
#Deleted in new
chr20	6000417	6000941	ENSG00000275632.1|AL035461.2|lncRNA|chr20:6000417:6000941:+	0	+
#Deleted in new
chr20	6000520	6000675	ENSG00000278719.1|MCM8-AS1|lncRNA|chr20:6000520:6000675:-	0	-
#Deleted in new
chr20	6001275	6001397	ENSG00000278719.1|MCM8-AS1|lncRNA|chr20:6001275:6001397:-	0	-
#Deleted in new
chr20	60031230	60031426	ENSG00000124215.16|CDH26|pc|chr20:60031230:60031426:+	0	+
#Deleted in new
chr20	60033485	60034011	ENSG00000124215.16|CDH26|pc|chr20:60033485:60034011:+	0	+
#Deleted in new
chr20	60069832	60070043	ENSG00000176659.7|C20orf197|lncRNA|chr20:60069832:60070043:+	0	+
#Partially deleted in new
chr20	60070596	60072953	ENSG00000176659.7|C20orf197|lncRNA|chr20:60070596:60072953:+	0	+
#Deleted in new
chr20	60087839	60088000	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60087839:60088000:+	0	+
#Deleted in new
chr20	60087856	60088000	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60087856:60088000:+	0	+
#Deleted in new
chr20	60087863	60088000	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60087863:60088000:+	0	+
#Deleted in new
chr20	60087887	60088000	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60087887:60088000:+	0	+
#Deleted in new
chr20	60087947	60088000	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60087947:60088000:+	0	+
#Deleted in new
chr20	60088596	60088721	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60088596:60088721:+	0	+
#Deleted in new
chr20	60088638	60088721	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60088638:60088721:+	0	+
#Deleted in new
chr20	60098928	60098963	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60098928:60098963:+	0	+
#Deleted in new
chr20	60098928	60099032	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60098928:60099032:+	0	+
#Deleted in new
chr20	60123491	60123606	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60123491:60123606:+	0	+
#Deleted in new
chr20	60138491	60138644	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60138491:60138644:+	0	+
#Deleted in new
chr20	60154406	60154501	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60154406:60154501:+	0	+
#Deleted in new
chr20	60154406	60154506	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60154406:60154506:+	0	+
#Deleted in new
chr20	6023379	6023422	ENSG00000088766.11|CRLS1|pc|chr20:6023379:6023422:+	0	+
#Partially deleted in new
chr20	60246037	60246129	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60246037:60246129:+	0	+
#Deleted in new
chr20	60247554	60247689	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60247554:60247689:+	0	+
#Deleted in new
chr20	60249493	60250002	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60249493:60250002:+	0	+
#Deleted in new
chr20	6026170	6026238	ENSG00000088766.11|CRLS1|pc|chr20:6026170:6026238:+	0	+
#Deleted in new
chr20	6028270	6028725	ENSG00000088766.11|CRLS1|pc|chr20:6028270:6028725:+	0	+
#Deleted in new
chr20	60284476	60284613	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60284476:60284613:+	0	+
#Deleted in new
chr20	6028671	6028725	ENSG00000088766.11|CRLS1|pc|chr20:6028671:6028725:+	0	+
#Deleted in new
chr20	60313309	60313387	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60313309:60313387:+	0	+
#Deleted in new
chr20	60318920	60319007	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60318920:60319007:+	0	+
#Deleted in new
chr20	60320632	60320858	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60320632:60320858:+	0	+
#Deleted in new
chr20	60320632	60322256	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60320632:60322256:+	0	+
#Partially deleted in new
chr20	60330872	60331584	ENSG00000228340.5|MIR646HG|lncRNA|chr20:60330872:60331584:+	0	+
#Partially deleted in new
chr20	6065965	6067897	ENSG00000278192.1|AL118505.1|lncRNA|chr20:6065965:6067897:-	0	-
#Partially deleted in new
chr20	60762286	60762487	ENSG00000276627.1|AL117372.1|lncRNA|chr20:60762286:60762487:+	0	+
#Deleted in new
chr20	60764852	60764931	ENSG00000276627.1|AL117372.1|lncRNA|chr20:60764852:60764931:+	0	+
#Deleted in new
chr20	60767221	60767279	ENSG00000276627.1|AL117372.1|lncRNA|chr20:60767221:60767279:+	0	+
#Deleted in new
chr20	60812003	60814211	ENSG00000261035.1|AL139348.1|lncRNA|chr20:60812003:60814211:-	0	-
#Deleted in new
chr20	61077223	61077616	ENSG00000229755.1|AL121910.1|lncRNA|chr20:61077223:61077616:-	0	-
#Partially deleted in new
chr20	61077709	61077816	ENSG00000229755.1|AL121910.1|lncRNA|chr20:61077709:61077816:-	0	-
#Partially deleted in new
chr20	61369878	61370855	ENSG00000276786.1|BX640515.1|lncRNA|chr20:61369878:61370855:+	0	+
#Deleted in new
chr20	61570134	61570743	ENSG00000179242.15|CDH4|pc|chr20:61570134:61570743:+	0	+
#Partially deleted in new
chr20	61599760	61599989	ENSG00000179242.15|CDH4|pc|chr20:61599760:61599989:+	0	+
#Deleted in new
chr20	61717505	61719386	ENSG00000179253.3|AL162457.1|lncRNA|chr20:61717505:61719386:-	0	-
#Deleted in new
chr20	61738218	61739090	ENSG00000225106.1|AL162457.2|lncRNA|chr20:61738218:61739090:-	0	-
#Deleted in new
chr20	61738862	61739090	ENSG00000225106.1|AL162457.2|lncRNA|chr20:61738862:61739090:-	0	-
#Deleted in new
chr20	61740470	61740887	ENSG00000225106.1|AL162457.2|lncRNA|chr20:61740470:61740887:-	0	-
#Deleted in new
chr20	61754991	61755025	ENSG00000225106.1|AL162457.2|lncRNA|chr20:61754991:61755025:-	0	-
#Deleted in new
chr20	61754991	61755056	ENSG00000225106.1|AL162457.2|lncRNA|chr20:61754991:61755056:-	0	-
#Deleted in new
chr20	61953468	61953828	ENSG00000130699.18|TAF4|pc|chr20:61953468:61953828:-	0	-
#Deleted in new
chr20	61978936	61979301	ENSG00000130699.18|TAF4|pc|chr20:61978936:61979301:-	0	-
#Deleted in new
chr20	61980127	61981432	ENSG00000130699.18|TAF4|pc|chr20:61980127:61981432:-	0	-
#Partially deleted in new
chr20	62007932	62008187	ENSG00000130699.18|TAF4|pc|chr20:62007932:62008187:-	0	-
#Partially deleted in new
chr20	62012103	62012379	ENSG00000130699.18|TAF4|pc|chr20:62012103:62012379:-	0	-
#Deleted in new
chr20	62142474	62142596	ENSG00000101182.14|PSMA7|pc|chr20:62142474:62142596:-	0	-
#Deleted in new
chr20	62154280	62154465	ENSG00000184402.14|SS18L1|pc|chr20:62154280:62154465:+	0	+
#Duplicated in new
chr20	62158671	62158942	ENSG00000184402.14|SS18L1|pc|chr20:62158671:62158942:+	0	+
#Deleted in new
chr20	62183028	62183057	ENSG00000101181.17|MTG2|pc|chr20:62183028:62183057:+	0	+
#Deleted in new
chr20	62183041	62183057	ENSG00000101181.17|MTG2|pc|chr20:62183041:62183057:+	0	+
#Deleted in new
chr20	62183043	62183057	ENSG00000101181.17|MTG2|pc|chr20:62183043:62183057:+	0	+
#Deleted in new
chr20	62183044	62183057	ENSG00000101181.17|MTG2|pc|chr20:62183044:62183057:+	0	+
#Deleted in new
chr20	62183050	62183057	ENSG00000101181.17|MTG2|pc|chr20:62183050:62183057:+	0	+
#Deleted in new
chr20	62188789	62188805	ENSG00000101181.17|MTG2|pc|chr20:62188789:62188805:+	0	+
#Partially deleted in new
chr20	62197214	62197967	ENSG00000101181.17|MTG2|pc|chr20:62197214:62197967:+	0	+
#Deleted in new
chr20	62202738	62202843	ENSG00000101181.17|MTG2|pc|chr20:62202738:62202843:+	0	+
#Partially deleted in new
chr20	62203083	62203568	ENSG00000101181.17|MTG2|pc|chr20:62203083:62203568:+	0	+
#Split in new
chr20	62284045	62286449	ENSG00000130703.15|OSBPL2|pc|chr20:62284045:62286449:+	0	+
#Partially deleted in new
chr20	62302092	62302142	ENSG00000130706.12|ADRM1|pc|chr20:62302092:62302142:+	0	+
#Deleted in new
chr20	62305431	62305826	ENSG00000226332.2|AL354836.1|lncRNA|chr20:62305431:62305826:-	0	-
#Partially deleted in new
chr20	62326459	62326631	ENSG00000130702.15|LAMA5|pc|chr20:62326459:62326631:-	0	-
#Deleted in new
chr20	62345413	62345585	ENSG00000130702.15|LAMA5|pc|chr20:62345413:62345585:-	0	-
#Partially deleted in new
chr20	62355267	62355480	ENSG00000228812.7|LAMA5-AS1|lncRNA|chr20:62355267:62355480:+	0	+
#Partially deleted in new
chr20	62386302	62386970	ENSG00000273619.1|AL121832.2|lncRNA|chr20:62386302:62386970:-	0	-
#Partially deleted in new
chr20	62402235	62405935	ENSG00000275437.1|AL121832.3|lncRNA|chr20:62402235:62405935:-	0	-
#Partially deleted in new
chr20	62410236	62410996	ENSG00000130701.3|RBBP8NL|pc|chr20:62410236:62410996:-	0	-
#Deleted in new
chr20	62429074	62429318	ENSG00000233017.2|AL121832.1|lncRNA|chr20:62429074:62429318:+	0	+
#Deleted in new
chr20	62429120	62429318	ENSG00000233017.2|AL121832.1|lncRNA|chr20:62429120:62429318:+	0	+
#Deleted in new
chr20	62429546	62429771	ENSG00000233017.2|AL121832.1|lncRNA|chr20:62429546:62429771:+	0	+
#Partially deleted in new
chr20	62430772	62431064	ENSG00000233017.2|AL121832.1|lncRNA|chr20:62430772:62431064:+	0	+
#Deleted in new
chr20	62430863	62431064	ENSG00000233017.2|AL121832.1|lncRNA|chr20:62430863:62431064:+	0	+
#Deleted in new
chr20	62447399	62447621	ENSG00000233017.2|AL121832.1|lncRNA|chr20:62447399:62447621:+	0	+
#Partially deleted in new
chr20	62477869	62478594	ENSG00000272050.1|AL499627.2|lncRNA|chr20:62477869:62478594:+	0	+
#Partially deleted in new
chr20	62513908	62516096	ENSG00000260542.1|AL499627.1|lncRNA|chr20:62513908:62516096:-	0	-
#Deleted in new
chr20	62544342	62544763	ENSG00000174403.15|C20orf166-AS1|lncRNA|chr20:62544342:62544763:-	0	-
#Deleted in new
chr20	62544546	62546858	ENSG00000174403.15|C20orf166-AS1|lncRNA|chr20:62544546:62546858:-	0	-
#Deleted in new
chr20	62545219	62545367	ENSG00000174403.15|C20orf166-AS1|lncRNA|chr20:62545219:62545367:-	0	-
#Deleted in new
chr20	62545705	62546858	ENSG00000174403.15|C20orf166-AS1|lncRNA|chr20:62545705:62546858:-	0	-
#Deleted in new
chr20	62546215	62546675	ENSG00000174403.15|C20orf166-AS1|lncRNA|chr20:62546215:62546675:-	0	-
#Deleted in new
chr20	62546813	62546858	ENSG00000174403.15|C20orf166-AS1|lncRNA|chr20:62546813:62546858:-	0	-
#Deleted in new
chr20	62547547	62547702	ENSG00000174403.15|C20orf166-AS1|lncRNA|chr20:62547547:62547702:-	0	-
#Deleted in new
chr20	62547826	62548000	ENSG00000174403.15|C20orf166-AS1|lncRNA|chr20:62547826:62548000:-	0	-
#Deleted in new
chr20	62548311	62548461	ENSG00000174403.15|C20orf166-AS1|lncRNA|chr20:62548311:62548461:-	0	-
#Partially deleted in new
chr20	62549444	62549641	ENSG00000174403.15|C20orf166-AS1|lncRNA|chr20:62549444:62549641:-	0	-
#Deleted in new
chr20	62570443	62570764	ENSG00000174407.13|MIR1-1HG|lncRNA|chr20:62570443:62570764:+	0	+
#Deleted in new
chr20	62596731	62597218	ENSG00000273812.1|BX640514.2|lncRNA|chr20:62596731:62597218:-	0	-
#Deleted in new
chr20	62602977	62603115	ENSG00000273812.1|BX640514.2|lncRNA|chr20:62602977:62603115:-	0	-
#Deleted in new
chr20	62633680	62633968	ENSG00000232121.1|AL450469.2|lncRNA|chr20:62633680:62633968:-	0	-
#Deleted in new
chr20	62633771	62633867	ENSG00000229882.1|AL450469.1|lncRNA|chr20:62633771:62633867:+	0	+
#Deleted in new
chr20	62634082	62634208	ENSG00000232121.1|AL450469.2|lncRNA|chr20:62634082:62634208:-	0	-
#Partially deleted in new
chr20	62640718	62642360	ENSG00000167046.4|AL357033.1|lncRNA|chr20:62640718:62642360:-	0	-
#Partially deleted in new
chr20	62648960	62650767	ENSG00000277496.1|AL357033.4|lncRNA|chr20:62648960:62650767:-	0	-
#Deleted in new
chr20	62651271	62651508	ENSG00000276317.1|AL357033.3|lncRNA|chr20:62651271:62651508:-	0	-
#Deleted in new
chr20	62651809	62652186	ENSG00000276317.1|AL357033.3|lncRNA|chr20:62651809:62652186:-	0	-
#Partially deleted in new
chr20	62663018	62663424	ENSG00000232803.1|SLCO4A1-AS1|lncRNA|chr20:62663018:62663424:-	0	-
#Partially deleted in new
chr20	62663018	62663487	ENSG00000232803.1|SLCO4A1-AS1|lncRNA|chr20:62663018:62663487:-	0	-
#Partially deleted in new
chr20	62663030	62663487	ENSG00000232803.1|SLCO4A1-AS1|lncRNA|chr20:62663030:62663487:-	0	-
#Partially deleted in new
chr20	62665859	62666010	ENSG00000232803.1|SLCO4A1-AS1|lncRNA|chr20:62665859:62666010:-	0	-
#Deleted in new
chr20	62667477	62667586	ENSG00000101187.15|SLCO4A1|pc|chr20:62667477:62667586:+	0	+
#Deleted in new
chr20	62669950	62670118	ENSG00000101187.15|SLCO4A1|pc|chr20:62669950:62670118:+	0	+
#Deleted in new
chr20	62669950	62670222	ENSG00000101187.15|SLCO4A1|pc|chr20:62669950:62670222:+	0	+
#Deleted in new
chr20	62672455	62672607	ENSG00000101187.15|SLCO4A1|pc|chr20:62672455:62672607:+	0	+
#Deleted in new
chr20	62695023	62695263	ENSG00000237687.2|LINC00686|lncRNA|chr20:62695023:62695263:-	0	-
#Deleted in new
chr20	62700388	62700480	ENSG00000237687.2|LINC00686|lncRNA|chr20:62700388:62700480:-	0	-
#Deleted in new
chr20	62756630	62756735	ENSG00000101188.4|NTSR1|pc|chr20:62756630:62756735:+	0	+
#Deleted in new
chr20	62775314	62775412	ENSG00000228705.1|LINC00659|lncRNA|chr20:62775314:62775412:-	0	-
#Partially deleted in new
chr20	62800626	62801079	ENSG00000229873.1|OGFR-AS1|lncRNA|chr20:62800626:62801079:-	0	-
#Deleted in new
chr20	62802014	62802109	ENSG00000229873.1|OGFR-AS1|lncRNA|chr20:62802014:62802109:-	0	-
#Deleted in new
chr20	62805467	62805587	ENSG00000229873.1|OGFR-AS1|lncRNA|chr20:62805467:62805587:-	0	-
#Deleted in new
chr20	62816243	62816317	ENSG00000092758.15|COL9A3|pc|chr20:62816243:62816317:+	0	+
#Partially deleted in new
chr20	62831657	62831741	ENSG00000092758.15|COL9A3|pc|chr20:62831657:62831741:+	0	+
#Deleted in new
chr20	62831727	62831987	ENSG00000092758.15|COL9A3|pc|chr20:62831727:62831987:+	0	+
#Deleted in new
chr20	62928620	62929297	ENSG00000273759.1|AL117379.1|lncRNA|chr20:62928620:62929297:-	0	-
#Deleted in new
chr20	62938599	62938824	ENSG00000101193.7|GID8|pc|chr20:62938599:62938824:+	0	+
#Deleted in new
chr20	62953210	62953272	ENSG00000101194.17|SLC17A9|pc|chr20:62953210:62953272:+	0	+
#Deleted in new
chr20	63009382	63009473	ENSG00000272259.5|LINC01749|lncRNA|chr20:63009382:63009473:+	0	+
#Partially deleted in new
chr20	63034216	63034668	ENSG00000125514.9|LINC00029|lncRNA|chr20:63034216:63034668:-	0	-
#Partially deleted in new
chr20	63034216	63034709	ENSG00000125514.9|LINC00029|lncRNA|chr20:63034216:63034709:-	0	-
#Deleted in new
chr20	63035282	63035441	ENSG00000125514.9|LINC00029|lncRNA|chr20:63035282:63035441:-	0	-
#Partially deleted in new
chr20	63035564	63035721	ENSG00000125514.9|LINC00029|lncRNA|chr20:63035564:63035721:-	0	-
#Deleted in new
chr20	63036047	63036353	ENSG00000125514.9|LINC00029|lncRNA|chr20:63036047:63036353:-	0	-
#Deleted in new
chr20	63036047	63036396	ENSG00000125514.9|LINC00029|lncRNA|chr20:63036047:63036396:-	0	-
#Deleted in new
chr20	63036047	63037028	ENSG00000125514.9|LINC00029|lncRNA|chr20:63036047:63037028:-	0	-
#Deleted in new
chr20	63038010	63038185	ENSG00000237119.1|LINC01056|lncRNA|chr20:63038010:63038185:+	0	+
#Deleted in new
chr20	63048855	63048925	ENSG00000237119.1|LINC01056|lncRNA|chr20:63048855:63048925:+	0	+
#Deleted in new
chr20	63049511	63049656	ENSG00000237119.1|LINC01056|lncRNA|chr20:63049511:63049656:+	0	+
#Deleted in new
chr20	63051621	63051751	ENSG00000237119.1|LINC01056|lncRNA|chr20:63051621:63051751:+	0	+
#Deleted in new
chr20	63052904	63053266	ENSG00000237119.1|LINC01056|lncRNA|chr20:63052904:63053266:+	0	+
#Deleted in new
chr20	63053511	63053863	ENSG00000237119.1|LINC01056|lncRNA|chr20:63053511:63053863:+	0	+
#Deleted in new
chr20	63079991	63080946	ENSG00000272259.5|LINC01749|lncRNA|chr20:63079991:63080946:+	0	+
#Deleted in new
chr20	63082181	63083342	ENSG00000272259.5|LINC01749|lncRNA|chr20:63082181:63083342:+	0	+
#Deleted in new
chr20	63083281	63084133	ENSG00000272259.5|LINC01749|lncRNA|chr20:63083281:63084133:+	0	+
#Partially deleted in new
chr20	63083870	63085071	ENSG00000272259.5|LINC01749|lncRNA|chr20:63083870:63085071:+	0	+
#Deleted in new
chr20	63095492	63095913	ENSG00000231133.6|HAR1B|lncRNA|chr20:63095492:63095913:-	0	-
#Deleted in new
chr20	63095492	63096183	ENSG00000231133.6|HAR1B|lncRNA|chr20:63095492:63096183:-	0	-
#Deleted in new
chr20	63096036	63096183	ENSG00000231133.6|HAR1B|lncRNA|chr20:63096036:63096183:-	0	-
#Split in new
chr20	63102204	63103254	ENSG00000225978.3|HAR1A|lncRNA|chr20:63102204:63103254:+	0	+
#Partially deleted in new
chr20	63103554	63104386	ENSG00000225978.3|HAR1A|lncRNA|chr20:63103554:63104386:+	0	+
#Deleted in new
chr20	63127494	63129459	ENSG00000260416.1|AL096828.2|lncRNA|chr20:63127494:63129459:-	0	-
#Partially deleted in new
chr20	63166796	63167150	ENSG00000231977.1|AL096828.1|lncRNA|chr20:63166796:63167150:-	0	-
#Deleted in new
chr20	63218040	63218502	ENSG00000273821.1|AL096828.3|lncRNA|chr20:63218040:63218502:+	0	+
#Deleted in new
chr20	63244469	63244543	ENSG00000101198.14|NKAIN4|pc|chr20:63244469:63244543:-	0	-
#Deleted in new
chr20	63247065	63247151	ENSG00000101198.14|NKAIN4|pc|chr20:63247065:63247151:-	0	-
#Deleted in new
chr20	63248138	63248225	ENSG00000101198.14|NKAIN4|pc|chr20:63248138:63248225:-	0	-
#Deleted in new
chr20	63248445	63248533	ENSG00000101198.14|NKAIN4|pc|chr20:63248445:63248533:-	0	-
#Partially deleted in new
chr20	63253977	63261615	ENSG00000275620.1|FLJ16779|lncRNA|chr20:63253977:63261615:+	0	+
#Deleted in new
chr20	63272581	63272694	ENSG00000101198.14|NKAIN4|pc|chr20:63272581:63272694:-	0	-
#Partially deleted in new
chr20	63273317	63273518	ENSG00000101199.12|ARFGAP1|pc|chr20:63273317:63273518:+	0	+
#Partially deleted in new
chr20	63273999	63274210	ENSG00000101199.12|ARFGAP1|pc|chr20:63273999:63274210:+	0	+
#Deleted in new
chr20	63279219	63279306	ENSG00000101199.12|ARFGAP1|pc|chr20:63279219:63279306:+	0	+
#Partially deleted in new
chr20	63282818	63283528	ENSG00000101199.12|ARFGAP1|pc|chr20:63282818:63283528:+	0	+
#Deleted in new
chr20	63289677	63289788	ENSG00000101199.12|ARFGAP1|pc|chr20:63289677:63289788:+	0	+
#Partially deleted in new
chr20	63330719	63334851	ENSG00000101203.16|COL20A1|pc|chr20:63330719:63334851:+	0	+
#Deleted in new
chr20	63354532	63354566	ENSG00000101204.16|CHRNA4|pc|chr20:63354532:63354566:-	0	-
#Deleted in new
chr20	63354655	63354754	ENSG00000101204.16|CHRNA4|pc|chr20:63354655:63354754:-	0	-
#Deleted in new
chr20	63355495	63355595	ENSG00000101204.16|CHRNA4|pc|chr20:63355495:63355595:-	0	-
#Deleted in new
chr20	63409960	63410009	ENSG00000075043.18|KCNQ2|pc|chr20:63409960:63410009:-	0	-
#Partially deleted in new
chr20	63433508	63433540	ENSG00000075043.18|KCNQ2|pc|chr20:63433508:63433540:-	0	-
#Partially deleted in new
chr20	63434212	63434435	ENSG00000075043.18|KCNQ2|pc|chr20:63434212:63434435:-	0	-
#Deleted in new
chr20	63437352	63437403	ENSG00000075043.18|KCNQ2|pc|chr20:63437352:63437403:-	0	-
#Deleted in new
chr20	63447375	63447451	ENSG00000075043.18|KCNQ2|pc|chr20:63447375:63447451:-	0	-
#Deleted in new
chr20	63448050	63448570	ENSG00000226390.1|AL353658.1|lncRNA|chr20:63448050:63448570:+	0	+
#Deleted in new
chr20	63449060	63449329	ENSG00000226390.1|AL353658.1|lncRNA|chr20:63449060:63449329:+	0	+
#Deleted in new
chr20	63458995	63459077	ENSG00000075043.18|KCNQ2|pc|chr20:63458995:63459077:-	0	-
#Deleted in new
chr20	63459041	63459133	ENSG00000075043.18|KCNQ2|pc|chr20:63459041:63459133:-	0	-
#Deleted in new
chr20	63459472	63459501	ENSG00000075043.18|KCNQ2|pc|chr20:63459472:63459501:-	0	-
#Deleted in new
chr20	63459910	63459968	ENSG00000075043.18|KCNQ2|pc|chr20:63459910:63459968:-	0	-
#Deleted in new
chr20	63459910	63460048	ENSG00000075043.18|KCNQ2|pc|chr20:63459910:63460048:-	0	-
#Deleted in new
chr20	63460926	63460934	ENSG00000075043.18|KCNQ2|pc|chr20:63460926:63460934:-	0	-
#Deleted in new
chr20	63466432	63466504	ENSG00000075043.18|KCNQ2|pc|chr20:63466432:63466504:-	0	-
#Deleted in new
chr20	63466625	63466654	ENSG00000075043.18|KCNQ2|pc|chr20:63466625:63466654:-	0	-
#Deleted in new
chr20	63504903	63505111	ENSG00000230226.1|AL121829.1|lncRNA|chr20:63504903:63505111:+	0	+
#Partially deleted in new
chr20	63528000	63529723	ENSG00000101213.6|PTK6|pc|chr20:63528000:63529723:-	0	-
#Partially deleted in new
chr20	63528424	63529723	ENSG00000101213.6|PTK6|pc|chr20:63528424:63529723:-	0	-
#Deleted in new
chr20	63553019	63553101	ENSG00000125531.6|FNDC11|pc|chr20:63553019:63553101:+	0	+
#Deleted in new
chr20	63574183	63574239	ENSG00000130589.16|HELZ2|pc|chr20:63574183:63574239:-	0	-
#Deleted in new
chr20	63627226	63627392	ENSG00000232442.1|MHENCR|lncRNA|chr20:63627226:63627392:+	0	+
#Deleted in new
chr20	63627249	63627392	ENSG00000232442.1|MHENCR|lncRNA|chr20:63627249:63627392:+	0	+
#Deleted in new
chr20	63628189	63628824	ENSG00000232442.1|MHENCR|lncRNA|chr20:63628189:63628824:+	0	+
#Deleted in new
chr20	63628268	63628707	ENSG00000232442.1|MHENCR|lncRNA|chr20:63628268:63628707:+	0	+
#Partially deleted in new
chr20	63660675	63660796	ENSG00000258366.7|RTEL1|pc|chr20:63660675:63660796:+	0	+
#Partially deleted in new
chr20	63695777	63696245	ENSG00000258366.7|RTEL1|pc|chr20:63695777:63696245:+	0	+
#Partially deleted in new
chr20	63695777	63696248	ENSG00000258366.7|RTEL1|pc|chr20:63695777:63696248:+	0	+
#Partially deleted in new
chr20	63695777	63696253	ENSG00000258366.7|RTEL1|pc|chr20:63695777:63696253:+	0	+
#Partially deleted in new
chr20	63695777	63697191	ENSG00000026036.21|RTEL1-TNFRSF6B|pc|chr20:63695777:63697191:+	0	+
#Deleted in new
chr20	63697327	63697522	ENSG00000026036.21|RTEL1-TNFRSF6B|pc|chr20:63697327:63697522:+	0	+
#Deleted in new
chr20	63697327	63697522	ENSG00000243509.4|TNFRSF6B|pc|chr20:63697327:63697522:+	0	+
#Partially deleted in new
chr20	63698641	63700530	ENSG00000101246.19|ARFRP1|pc|chr20:63698641:63700530:-	0	-
#Partially deleted in new
chr20	63698642	63700530	ENSG00000101246.19|ARFRP1|pc|chr20:63698642:63700530:-	0	-
#Partially deleted in new
chr20	63698642	63700702	ENSG00000101246.19|ARFRP1|pc|chr20:63698642:63700702:-	0	-
#Partially deleted in new
chr20	63699455	63700530	ENSG00000101246.19|ARFRP1|pc|chr20:63699455:63700530:-	0	-
#Partially deleted in new
chr20	63699496	63700530	ENSG00000101246.19|ARFRP1|pc|chr20:63699496:63700530:-	0	-
#Deleted in new
chr20	63699610	63699700	ENSG00000101246.19|ARFRP1|pc|chr20:63699610:63699700:-	0	-
#Partially deleted in new
chr20	63700166	63700301	ENSG00000101246.19|ARFRP1|pc|chr20:63700166:63700301:-	0	-
#Partially deleted in new
chr20	63702135	63706053	ENSG00000101246.19|ARFRP1|pc|chr20:63702135:63706053:-	0	-
#Deleted in new
chr20	63705578	63705791	ENSG00000101246.19|ARFRP1|pc|chr20:63705578:63705791:-	0	-
#Deleted in new
chr20	63707464	63707559	ENSG00000197114.11|ZGPAT|pc|chr20:63707464:63707559:+	0	+
#Partially deleted in new
chr20	63708089	63708188	ENSG00000197114.11|ZGPAT|pc|chr20:63708089:63708188:+	0	+
#Deleted in new
chr20	63730071	63730377	ENSG00000274501.1|AL121845.4|lncRNA|chr20:63730071:63730377:-	0	-
#Deleted in new
chr20	63787719	63788309	ENSG00000130584.10|ZBTB46|pc|chr20:63787719:63788309:-	0	-
#Deleted in new
chr20	63808075	63808155	ENSG00000231208.4|ZBTB46-AS1|lncRNA|chr20:63808075:63808155:+	0	+
#Partially deleted in new
chr20	63814886	63815170	ENSG00000231208.4|ZBTB46-AS1|lncRNA|chr20:63814886:63815170:+	0	+
#Deleted in new
chr20	63843435	63843915	ENSG00000279610.1|C20orf181|lncRNA|chr20:63843435:63843915:-	0	-
#Partially deleted in new
chr20	63953383	63956985	ENSG00000280213.1|UCKL1-AS1|lncRNA|chr20:63953383:63956985:+	0	+
#Partially deleted in new
chr20	64034343	64036047	ENSG00000196421.8|C20orf204|pc|chr20:64034343:64036047:+	0	+
#Deleted in new
chr20	64056971	64057084	ENSG00000237371.1|AL355803.1|lncRNA|chr20:64056971:64057084:+	0	+
#Deleted in new
chr20	64057292	64057651	ENSG00000171703.16|TCEA2|pc|chr20:64057292:64057651:+	0	+
#Deleted in new
chr20	64062429	64062503	ENSG00000171703.16|TCEA2|pc|chr20:64062429:64062503:+	0	+
#Deleted in new
chr20	64062429	64062867	ENSG00000171703.16|TCEA2|pc|chr20:64062429:64062867:+	0	+
#Partially deleted in new
chr20	64063480	64063949	ENSG00000171703.16|TCEA2|pc|chr20:64063480:64063949:+	0	+
#Deleted in new
chr20	64063891	64063949	ENSG00000171703.16|TCEA2|pc|chr20:64063891:64063949:+	0	+
#Partially deleted in new
chr20	64063891	64064123	ENSG00000171703.16|TCEA2|pc|chr20:64063891:64064123:+	0	+
#Deleted in new
chr20	64064325	64064352	ENSG00000171703.16|TCEA2|pc|chr20:64064325:64064352:+	0	+
#Partially deleted in new
chr20	64085015	64085148	ENSG00000125510.15|OPRL1|pc|chr20:64085015:64085148:+	0	+
#Deleted in new
chr20	64086504	64086599	ENSG00000125510.15|OPRL1|pc|chr20:64086504:64086599:+	0	+
#Deleted in new
chr20	64262527	64262687	ENSG00000203880.11|PCMTD2|pc|chr20:64262527:64262687:+	0	+
#Deleted in new
chr20	64262770	64262950	ENSG00000203880.11|PCMTD2|pc|chr20:64262770:64262950:+	0	+
#Deleted in new
chr20	64287678	64287821	ENSG00000203880.11|PCMTD2|pc|chr20:64287678:64287821:+	0	+
#Partially deleted in new
chr20	64290384	64290734	ENSG00000149656.8|LINC00266-1|lncRNA|chr20:64290384:64290734:+	0	+
#Deleted in new
chr20	64312727	64313132	ENSG00000149656.8|LINC00266-1|lncRNA|chr20:64312727:64313132:+	0	+
#Deleted in new
chr20	6446722	6446823	ENSG00000229876.1|CASC20|lncRNA|chr20:6446722:6446823:+	0	+
#Deleted in new
chr20	6527193	6528459	ENSG00000229876.1|CASC20|lncRNA|chr20:6527193:6528459:+	0	+
#Deleted in new
chr20	654230	654320	ENSG00000270299.1|AL121758.1|pc|chr20:654230:654320:-	0	-
#Deleted in new
chr20	7069613	7069694	ENSG00000232271.1|AL096799.1|lncRNA|chr20:7069613:7069694:+	0	+
#Partially deleted in new
chr20	7148000	7148199	ENSG00000228888.1|LINC01428|lncRNA|chr20:7148000:7148199:-	0	-
#Deleted in new
chr20	7183342	7183393	ENSG00000228888.1|LINC01428|lncRNA|chr20:7183342:7183393:-	0	-
#Deleted in new
chr20	7241828	7241876	ENSG00000228888.1|LINC01428|lncRNA|chr20:7241828:7241876:-	0	-
#Deleted in new
chr20	7307358	7307432	ENSG00000261249.1|LINC01751|lncRNA|chr20:7307358:7307432:-	0	-
#Deleted in new
chr20	7367279	7367632	ENSG00000224711.1|LINC01706|lncRNA|chr20:7367279:7367632:+	0	+
#Deleted in new
chr20	765949	766334	ENSG00000101276.14|SLC52A3|pc|chr20:765949:766334:-	0	-
#Deleted in new
chr20	768296	768482	ENSG00000101276.14|SLC52A3|pc|chr20:768296:768482:-	0	-
#Deleted in new
chr20	768296	768487	ENSG00000101276.14|SLC52A3|pc|chr20:768296:768487:-	0	-
#Deleted in new
chr20	768296	768584	ENSG00000101276.14|SLC52A3|pc|chr20:768296:768584:-	0	-
#Deleted in new
chr20	775954	776015	ENSG00000101276.14|SLC52A3|pc|chr20:775954:776015:-	0	-
#Deleted in new
chr20	8013767	8013930	ENSG00000125827.8|TMX4|pc|chr20:8013767:8013930:-	0	-
#Deleted in new
chr20	8027660	8027725	ENSG00000229766.6|AL021396.1|lncRNA|chr20:8027660:8027725:+	0	+
#Deleted in new
chr20	8027660	8027956	ENSG00000229766.6|AL021396.1|lncRNA|chr20:8027660:8027956:+	0	+
#Deleted in new
chr20	8040183	8040352	ENSG00000229766.6|AL021396.1|lncRNA|chr20:8040183:8040352:+	0	+
#Deleted in new
chr20	8043397	8043512	ENSG00000229766.6|AL021396.1|lncRNA|chr20:8043397:8043512:+	0	+
#Deleted in new
chr20	8114452	8114573	ENSG00000182621.17|PLCB1|pc|chr20:8114452:8114573:+	0	+
#Deleted in new
chr20	8114506	8114573	ENSG00000182621.17|PLCB1|pc|chr20:8114506:8114573:+	0	+
#Deleted in new
chr20	8141870	8141948	ENSG00000182621.17|PLCB1|pc|chr20:8141870:8141948:+	0	+
#Partially deleted in new
chr20	856748	857463	ENSG00000125898.12|FAM110A|pc|chr20:856748:857463:+	0	+
#Deleted in new
chr20	8600714	8600781	ENSG00000182621.17|PLCB1|pc|chr20:8600714:8600781:+	0	+
#Deleted in new
chr20	8600725	8600781	ENSG00000182621.17|PLCB1|pc|chr20:8600725:8600781:+	0	+
#Deleted in new
chr20	8623875	8623921	ENSG00000182621.17|PLCB1|pc|chr20:8623875:8623921:+	0	+
#Partially deleted in new
chr20	8649373	8649989	ENSG00000182621.17|PLCB1|pc|chr20:8649373:8649989:+	0	+
#Deleted in new
chr20	8880899	8880993	ENSG00000182621.17|PLCB1|pc|chr20:8880899:8880993:+	0	+
#Deleted in new
chr20	8962195	8962336	ENSG00000182621.17|PLCB1|pc|chr20:8962195:8962336:+	0	+
#Deleted in new
chr20	8962195	8963010	ENSG00000182621.17|PLCB1|pc|chr20:8962195:8963010:+	0	+
#Deleted in new
chr20	8962307	8962336	ENSG00000182621.17|PLCB1|pc|chr20:8962307:8962336:+	0	+
#Deleted in new
chr20	8962485	8963010	ENSG00000182621.17|PLCB1|pc|chr20:8962485:8963010:+	0	+
#Deleted in new
chr20	8962892	8963010	ENSG00000182621.17|PLCB1|pc|chr20:8962892:8963010:+	0	+
#Deleted in new
chr20	9784357	9784506	ENSG00000101349.16|PAK5|pc|chr20:9784357:9784506:-	0	-
#Partially deleted in new
chr2	10003157	10004085	ENSG00000188525.3|AC010969.1|lncRNA|chr2:10003157:10004085:-	0	-
#Deleted in new
chr2	10004546	10006030	ENSG00000188525.3|AC010969.1|lncRNA|chr2:10004546:10006030:-	0	-
#Partially deleted in new
chr2	100112385	100112524	ENSG00000144218.18|AFF3|pc|chr2:100112385:100112524:-	0	-
#Deleted in new
chr2	10021577	10022825	ENSG00000260476.1|AC104794.3|lncRNA|chr2:10021577:10022825:+	0	+
#Deleted in new
chr2	100249063	100249262	ENSG00000232084.5|LINC01104|lncRNA|chr2:100249063:100249262:+	0	+
#Deleted in new
chr2	100249063	100251484	ENSG00000232084.5|LINC01104|lncRNA|chr2:100249063:100251484:+	0	+
#Partially deleted in new
chr2	100273290	100284492	ENSG00000170500.12|LONRF2|pc|chr2:100273290:100284492:-	0	-
#Deleted in new
chr2	100408542	100408660	ENSG00000115526.10|CHST10|pc|chr2:100408542:100408660:-	0	-
#Deleted in new
chr2	100415773	100415845	ENSG00000115526.10|CHST10|pc|chr2:100415773:100415845:-	0	-
#Deleted in new
chr2	10044174	10044451	ENSG00000172059.10|KLF11|pc|chr2:10044174:10044451:+	0	+
#Deleted in new
chr2	10044244	10044451	ENSG00000172059.10|KLF11|pc|chr2:10044244:10044451:+	0	+
#Deleted in new
chr2	100609002	100609358	ENSG00000234988.1|LINC01849|lncRNA|chr2:100609002:100609358:+	0	+
#Deleted in new
chr2	100609132	100609351	ENSG00000234988.1|LINC01849|lncRNA|chr2:100609132:100609351:+	0	+
#Deleted in new
chr2	10080835	10080944	ENSG00000205795.4|CYS1|pc|chr2:10080835:10080944:-	0	-
#Deleted in new
chr2	10086019	10086101	ENSG00000233502.1|AC104794.1|lncRNA|chr2:10086019:10086101:+	0	+
#Partially deleted in new
chr2	100976715	100976800	ENSG00000230140.5|AC016738.2|lncRNA|chr2:100976715:100976800:-	0	-
#Deleted in new
chr2	100982612	100982636	ENSG00000170485.16|NPAS2|pc|chr2:100982612:100982636:+	0	+
#Partially deleted in new
chr2	101006349	101007267	ENSG00000071082.10|RPL31|pc|chr2:101006349:101007267:+	0	+
#Deleted in new
chr2	101017858	101018306	ENSG00000071082.10|RPL31|pc|chr2:101017858:101018306:+	0	+
#Deleted in new
chr2	101017888	101018289	ENSG00000071082.10|RPL31|pc|chr2:101017888:101018289:+	0	+
#Deleted in new
chr2	101018997	101019728	ENSG00000071082.10|RPL31|pc|chr2:101018997:101019728:+	0	+
#Deleted in new
chr2	101023624	101024032	ENSG00000071082.10|RPL31|pc|chr2:101023624:101024032:+	0	+
#Partially deleted in new
chr2	101109834	101109963	ENSG00000204634.12|TBC1D8|pc|chr2:101109834:101109963:-	0	-
#Deleted in new
chr2	101187823	101188123	ENSG00000204634.12|TBC1D8|pc|chr2:101187823:101188123:-	0	-
#Deleted in new
chr2	101187983	101188328	ENSG00000204634.12|TBC1D8|pc|chr2:101187983:101188328:-	0	-
#Deleted in new
chr2	101188233	101188328	ENSG00000204634.12|TBC1D8|pc|chr2:101188233:101188328:-	0	-
#Deleted in new
chr2	101195235	101195326	ENSG00000204634.12|TBC1D8|pc|chr2:101195235:101195326:-	0	-
#Deleted in new
chr2	10120697	10120882	ENSG00000171848.14|RRM2|pc|chr2:10120697:10120882:+	0	+
#Deleted in new
chr2	10120733	10121065	ENSG00000171848.14|RRM2|pc|chr2:10120733:10121065:+	0	+
#Partially deleted in new
chr2	10126511	10126969	ENSG00000171848.14|RRM2|pc|chr2:10126511:10126969:+	0	+
#Partially deleted in new
chr2	101272841	101272936	ENSG00000163162.8|RNF149|pc|chr2:101272841:101272936:-	0	-
#Split in new
chr2	10129233	10131418	ENSG00000171848.14|RRM2|pc|chr2:10129233:10131418:+	0	+
#Split in new
chr2	10129233	10131419	ENSG00000171848.14|RRM2|pc|chr2:10129233:10131419:+	0	+
#Deleted in new
chr2	10141381	10141641	ENSG00000163009.8|C2orf48|lncRNA|chr2:10141381:10141641:+	0	+
#Deleted in new
chr2	10141853	10141954	ENSG00000163009.8|C2orf48|lncRNA|chr2:10141853:10141954:+	0	+
#Deleted in new
chr2	10141853	10141954	ENSG00000284681.1|AC007240.1|pc|chr2:10141853:10141954:+	0	+
#Deleted in new
chr2	10141882	10141954	ENSG00000163009.8|C2orf48|lncRNA|chr2:10141882:10141954:+	0	+
#Deleted in new
chr2	10142254	10142375	ENSG00000163009.8|C2orf48|lncRNA|chr2:10142254:10142375:+	0	+
#Deleted in new
chr2	10142254	10142375	ENSG00000284681.1|AC007240.1|pc|chr2:10142254:10142375:+	0	+
#Deleted in new
chr2	101485418	101485615	ENSG00000223826.1|LINC01870|lncRNA|chr2:101485418:101485615:+	0	+
#Deleted in new
chr2	101797233	101797383	ENSG00000071054.16|MAP4K4|pc|chr2:101797233:101797383:+	0	+
#Deleted in new
chr2	101983464	101983578	ENSG00000281162.2|AC005035.1|lncRNA|chr2:101983464:101983578:+	0	+
#Deleted in new
chr2	101983467	101983578	ENSG00000281162.2|AC005035.1|lncRNA|chr2:101983467:101983578:+	0	+
#Deleted in new
chr2	101983691	101983821	ENSG00000281162.2|AC005035.1|lncRNA|chr2:101983691:101983821:+	0	+
#Deleted in new
chr2	101983691	101984170	ENSG00000281162.2|AC005035.1|lncRNA|chr2:101983691:101984170:+	0	+
#Partially deleted in new
chr2	101983691	101987167	ENSG00000281162.2|AC005035.1|lncRNA|chr2:101983691:101987167:+	0	+
#Deleted in new
chr2	101983763	101983821	ENSG00000281162.2|AC005035.1|lncRNA|chr2:101983763:101983821:+	0	+
#Deleted in new
chr2	101984583	101984704	ENSG00000281162.2|AC005035.1|lncRNA|chr2:101984583:101984704:+	0	+
#Deleted in new
chr2	101985147	101985304	ENSG00000281162.2|AC005035.1|lncRNA|chr2:101985147:101985304:+	0	+
#Deleted in new
chr2	101985147	101985545	ENSG00000281162.2|AC005035.1|lncRNA|chr2:101985147:101985545:+	0	+
#Deleted in new
chr2	10198591	10199288	ENSG00000284681.1|AC007240.1|pc|chr2:10198591:10199288:+	0	+
#Partially deleted in new
chr2	102343269	102344951	ENSG00000115602.16|IL1RL1|pc|chr2:102343269:102344951:+	0	+
#Deleted in new
chr2	102373936	102373981	ENSG00000115604.10|IL18R1|pc|chr2:102373936:102373981:+	0	+
#Deleted in new
chr2	102433956	102434290	ENSG00000236525.1|AC007278.2|lncRNA|chr2:102433956:102434290:+	0	+
#Deleted in new
chr2	102438937	102439298	ENSG00000234389.1|AC007278.1|lncRNA|chr2:102438937:102439298:+	0	+
#Deleted in new
chr2	102439592	102440475	ENSG00000234389.1|AC007278.1|lncRNA|chr2:102439592:102440475:+	0	+
#Deleted in new
chr2	102686409	102686768	ENSG00000115616.2|SLC9A2|pc|chr2:102686409:102686768:+	0	+
#Deleted in new
chr2	102689693	102689790	ENSG00000115616.2|SLC9A2|pc|chr2:102689693:102689790:+	0	+
#Deleted in new
chr2	102757412	102757539	ENSG00000170417.15|TMEM182|pc|chr2:102757412:102757539:+	0	+
#Deleted in new
chr2	102758388	102758473	ENSG00000170417.15|TMEM182|pc|chr2:102758388:102758473:+	0	+
#Deleted in new
chr2	102775129	102775518	ENSG00000170417.15|TMEM182|pc|chr2:102775129:102775518:+	0	+
#Deleted in new
chr2	102894572	102894777	ENSG00000277527.1|LINC01796|lncRNA|chr2:102894572:102894777:-	0	-
#Deleted in new
chr2	102895632	102895722	ENSG00000277527.1|LINC01796|lncRNA|chr2:102895632:102895722:-	0	-
#Deleted in new
chr2	103019549	103019898	ENSG00000170417.15|TMEM182|pc|chr2:103019549:103019898:+	0	+
#Deleted in new
chr2	103019549	103019900	ENSG00000170417.15|TMEM182|pc|chr2:103019549:103019900:+	0	+
#Deleted in new
chr2	103109758	103110077	ENSG00000229209.1|AC073987.1|lncRNA|chr2:103109758:103110077:-	0	-
#Deleted in new
chr2	10330162	10330210	ENSG00000115756.12|HPCAL1|pc|chr2:10330162:10330210:+	0	+
#Deleted in new
chr2	10354215	10354381	ENSG00000115756.12|HPCAL1|pc|chr2:10354215:10354381:+	0	+
#Deleted in new
chr2	103859474	103859643	ENSG00000232597.5|AC013727.1|lncRNA|chr2:103859474:103859643:-	0	-
#Deleted in new
chr2	103860121	103860209	ENSG00000232597.5|AC013727.1|lncRNA|chr2:103860121:103860209:-	0	-
#Deleted in new
chr2	103869194	103869295	ENSG00000236141.1|AC013727.2|lncRNA|chr2:103869194:103869295:-	0	-
#Deleted in new
chr2	103869616	103869688	ENSG00000236141.1|AC013727.2|lncRNA|chr2:103869616:103869688:-	0	-
#Deleted in new
chr2	104057997	104058336	ENSG00000256637.6|LINC01965|lncRNA|chr2:104057997:104058336:+	0	+
#Deleted in new
chr2	104057997	104059256	ENSG00000256637.6|LINC01965|lncRNA|chr2:104057997:104059256:+	0	+
#Deleted in new
chr2	10406264	10406361	ENSG00000115756.12|HPCAL1|pc|chr2:10406264:10406361:+	0	+
#Deleted in new
chr2	104077464	104077523	ENSG00000256637.6|LINC01965|lncRNA|chr2:104077464:104077523:+	0	+
#Deleted in new
chr2	104077464	104077604	ENSG00000256637.6|LINC01965|lncRNA|chr2:104077464:104077604:+	0	+
#Deleted in new
chr2	104077464	104077778	ENSG00000256637.6|LINC01965|lncRNA|chr2:104077464:104077778:+	0	+
#Deleted in new
chr2	104125267	104125289	ENSG00000228968.1|AC096554.1|lncRNA|chr2:104125267:104125289:-	0	-
#Deleted in new
chr2	104144095	104144310	ENSG00000228968.1|AC096554.1|lncRNA|chr2:104144095:104144310:-	0	-
#Partially deleted in new
chr2	10422982	10425981	ENSG00000115756.12|HPCAL1|pc|chr2:10422982:10425981:+	0	+
#Deleted in new
chr2	10424524	10424613	ENSG00000115756.12|HPCAL1|pc|chr2:10424524:10424613:+	0	+
#Deleted in new
chr2	10426219	10426495	ENSG00000115756.12|HPCAL1|pc|chr2:10426219:10426495:+	0	+
#Partially deleted in new
chr2	10448693	10449181	ENSG00000257135.5|AC007249.2|lncRNA|chr2:10448693:10449181:+	0	+
#Deleted in new
chr2	104510332	104510509	ENSG00000234781.2|LINC01103|lncRNA|chr2:104510332:104510509:-	0	-
#Deleted in new
chr2	10455245	10455268	ENSG00000217258.2|AC007249.1|lncRNA|chr2:10455245:10455268:+	0	+
#Deleted in new
chr2	10455422	10455552	ENSG00000217258.2|AC007249.1|lncRNA|chr2:10455422:10455552:+	0	+
#Deleted in new
chr2	104580820	104581188	ENSG00000231626.1|AC013402.2|lncRNA|chr2:104580820:104581188:-	0	-
#Deleted in new
chr2	104581821	104581890	ENSG00000231626.1|AC013402.2|lncRNA|chr2:104581821:104581890:-	0	-
#Partially deleted in new
chr2	104706611	104707506	ENSG00000279904.1|AC068057.2|lncRNA|chr2:104706611:104707506:+	0	+
#Deleted in new
chr2	104925954	104926052	ENSG00000269707.1|AC018730.2|lncRNA|chr2:104925954:104926052:+	0	+
#Partially deleted in new
chr2	105038453	105038496	ENSG00000224509.2|AC010884.1|lncRNA|chr2:105038453:105038496:-	0	-
#Deleted in new
chr2	105102835	105102944	ENSG00000231851.5|UTAT33|lncRNA|chr2:105102835:105102944:-	0	-
#Deleted in new
chr2	105324209	105324285	ENSG00000235319.1|AC012360.1|lncRNA|chr2:105324209:105324285:+	0	+
#Partially deleted in new
chr2	105357711	105361434	ENSG00000115641.18|FHL2|pc|chr2:105357711:105361434:-	0	-
#Partially deleted in new
chr2	105374092	105374214	ENSG00000238273.3|AC108058.1|lncRNA|chr2:105374092:105374214:+	0	+
#Deleted in new
chr2	105374443	105374517	ENSG00000238273.3|AC108058.1|lncRNA|chr2:105374443:105374517:+	0	+
#Deleted in new
chr2	105375259	105375628	ENSG00000238273.3|AC108058.1|lncRNA|chr2:105375259:105375628:+	0	+
#Partially deleted in new
chr2	105377995	105378117	ENSG00000115641.18|FHL2|pc|chr2:105377995:105378117:-	0	-
#Partially deleted in new
chr2	105389875	105390227	ENSG00000115641.18|FHL2|pc|chr2:105389875:105390227:-	0	-
#Deleted in new
chr2	105390106	105390227	ENSG00000115641.18|FHL2|pc|chr2:105390106:105390227:-	0	-
#Deleted in new
chr2	105396646	105396697	ENSG00000115641.18|FHL2|pc|chr2:105396646:105396697:-	0	-
#Deleted in new
chr2	105396646	105396785	ENSG00000115641.18|FHL2|pc|chr2:105396646:105396785:-	0	-
#Partially deleted in new
chr2	105396646	105396957	ENSG00000115641.18|FHL2|pc|chr2:105396646:105396957:-	0	-
#Deleted in new
chr2	105846533	105846767	ENSG00000235522.6|AC010978.1|lncRNA|chr2:105846533:105846767:-	0	-
#Deleted in new
chr2	105847191	105847303	ENSG00000235522.6|AC010978.1|lncRNA|chr2:105847191:105847303:-	0	-
#Partially deleted in new
chr2	105848500	105848608	ENSG00000235522.6|AC010978.1|lncRNA|chr2:105848500:105848608:-	0	-
#Deleted in new
chr2	105851747	105851897	ENSG00000071051.13|NCK2|pc|chr2:105851747:105851897:+	0	+
#Deleted in new
chr2	105851781	105851897	ENSG00000071051.13|NCK2|pc|chr2:105851781:105851897:+	0	+
#Deleted in new
chr2	1059132	1059349	ENSG00000235403.1|AC114808.1|lncRNA|chr2:1059132:1059349:-	0	-
#Deleted in new
chr2	10604688	10604830	ENSG00000234818.1|AC007314.1|lncRNA|chr2:10604688:10604830:+	0	+
#Deleted in new
chr2	106063245	106063413	ENSG00000119147.9|C2orf40|pc|chr2:106063245:106063413:+	0	+
#Deleted in new
chr2	106063256	106063413	ENSG00000119147.9|C2orf40|pc|chr2:106063256:106063413:+	0	+
#Deleted in new
chr2	106063293	106063413	ENSG00000119147.9|C2orf40|pc|chr2:106063293:106063413:+	0	+
#Deleted in new
chr2	106160436	106160584	ENSG00000115652.14|UXS1|pc|chr2:106160436:106160584:-	0	-
#Deleted in new
chr2	106160436	106160625	ENSG00000115652.14|UXS1|pc|chr2:106160436:106160625:-	0	-
#Partially deleted in new
chr2	106166200	106166479	ENSG00000115652.14|UXS1|pc|chr2:106166200:106166479:-	0	-
#Deleted in new
chr2	10622022	10622150	ENSG00000115761.15|NOL10|pc|chr2:10622022:10622150:-	0	-
#Deleted in new
chr2	106391289	106391513	ENSG00000153165.18|RGPD3|pc|chr2:106391289:106391513:-	0	-
#Deleted in new
chr2	106521902	106522140	ENSG00000231505.1|AC108868.1|lncRNA|chr2:106521902:106522140:-	0	-
#Deleted in new
chr2	106535158	106535371	ENSG00000231505.1|AC108868.1|lncRNA|chr2:106535158:106535371:-	0	-
#Deleted in new
chr2	106537976	106538079	ENSG00000231505.1|AC108868.1|lncRNA|chr2:106537976:106538079:-	0	-
#Deleted in new
chr2	106543013	106543218	ENSG00000232001.1|AC108868.2|lncRNA|chr2:106543013:106543218:+	0	+
#Deleted in new
chr2	106543991	106544297	ENSG00000232001.1|AC108868.2|lncRNA|chr2:106543991:106544297:+	0	+
#Deleted in new
chr2	1068126	1068341	ENSG00000235403.1|AC114808.1|lncRNA|chr2:1068126:1068341:-	0	-
#Deleted in new
chr2	106813075	106813224	ENSG00000144057.15|ST6GAL2|pc|chr2:106813075:106813224:-	0	-
#Deleted in new
chr2	106822922	106823144	ENSG00000238250.1|ST6GAL2-IT1|lncRNA|chr2:106822922:106823144:-	0	-
#Partially deleted in new
chr2	106834463	106834978	ENSG00000227294.1|AC016994.1|lncRNA|chr2:106834463:106834978:+	0	+
#Partially deleted in new
chr2	10690343	10692099	ENSG00000243819.4|RN7SL832P|lncRNA|chr2:10690343:10692099:+	0	+
#Deleted in new
chr2	10719034	10719082	ENSG00000236162.1|AC092687.2|lncRNA|chr2:10719034:10719082:+	0	+
#Deleted in new
chr2	107254690	107254881	ENSG00000229457.1|LINC01789|lncRNA|chr2:107254690:107254881:-	0	-
#Deleted in new
chr2	107267463	107267548	ENSG00000229457.1|LINC01789|lncRNA|chr2:107267463:107267548:-	0	-
#Deleted in new
chr2	107282038	107282078	ENSG00000229457.1|LINC01789|lncRNA|chr2:107282038:107282078:-	0	-
#Deleted in new
chr2	107282690	107282821	ENSG00000229457.1|LINC01789|lncRNA|chr2:107282690:107282821:-	0	-
#Deleted in new
chr2	107363139	107363416	ENSG00000225588.2|AC096669.1|lncRNA|chr2:107363139:107363416:+	0	+
#Deleted in new
chr2	107365479	107365543	ENSG00000229457.1|LINC01789|lncRNA|chr2:107365479:107365543:-	0	-
#Deleted in new
chr2	107365479	107365873	ENSG00000229457.1|LINC01789|lncRNA|chr2:107365479:107365873:-	0	-
#Deleted in new
chr2	107381038	107381275	ENSG00000225588.2|AC096669.1|lncRNA|chr2:107381038:107381275:+	0	+
#Deleted in new
chr2	107381191	107381275	ENSG00000225588.2|AC096669.1|lncRNA|chr2:107381191:107381275:+	0	+
#Deleted in new
chr2	107400451	107400686	ENSG00000225588.2|AC096669.1|lncRNA|chr2:107400451:107400686:+	0	+
#Deleted in new
chr2	107405986	107406120	ENSG00000225588.2|AC096669.1|lncRNA|chr2:107405986:107406120:+	0	+
#Deleted in new
chr2	107405986	107406260	ENSG00000225588.2|AC096669.1|lncRNA|chr2:107405986:107406260:+	0	+
#Deleted in new
chr2	107407144	107407329	ENSG00000225588.2|AC096669.1|lncRNA|chr2:107407144:107407329:+	0	+
#Deleted in new
chr2	107416694	107416783	ENSG00000237880.1|LINC01885|lncRNA|chr2:107416694:107416783:-	0	-
#Deleted in new
chr2	107528780	107528864	ENSG00000237880.1|LINC01885|lncRNA|chr2:107528780:107528864:-	0	-
#Deleted in new
chr2	107529486	107529699	ENSG00000224568.1|LINC01886|lncRNA|chr2:107529486:107529699:+	0	+
#Deleted in new
chr2	107542438	107542649	ENSG00000237880.1|LINC01885|lncRNA|chr2:107542438:107542649:-	0	-
#Deleted in new
chr2	107542748	107542821	ENSG00000224568.1|LINC01886|lncRNA|chr2:107542748:107542821:+	0	+
#Deleted in new
chr2	107555132	107555639	ENSG00000224568.1|LINC01886|lncRNA|chr2:107555132:107555639:+	0	+
#Deleted in new
chr2	107555132	107556326	ENSG00000224568.1|LINC01886|lncRNA|chr2:107555132:107556326:+	0	+
#Deleted in new
chr2	10767874	10768196	ENSG00000272275.1|AC092687.3|lncRNA|chr2:10767874:10768196:-	0	-
#Deleted in new
chr2	10769996	10770058	ENSG00000272275.1|AC092687.3|lncRNA|chr2:10769996:10770058:-	0	-
#Deleted in new
chr2	107754111	107754270	ENSG00000232991.5|GACAT1|lncRNA|chr2:107754111:107754270:+	0	+
#Deleted in new
chr2	107754144	107754270	ENSG00000232991.5|GACAT1|lncRNA|chr2:107754144:107754270:+	0	+
#Deleted in new
chr2	107755481	107755600	ENSG00000232991.5|GACAT1|lncRNA|chr2:107755481:107755600:+	0	+
#Deleted in new
chr2	107810679	107810740	ENSG00000232991.5|GACAT1|lncRNA|chr2:107810679:107810740:+	0	+
#Deleted in new
chr2	107819861	107819984	ENSG00000232991.5|GACAT1|lncRNA|chr2:107819861:107819984:+	0	+
#Partially deleted in new
chr2	107824560	107824743	ENSG00000230651.7|RGPD4-AS1|lncRNA|chr2:107824560:107824743:-	0	-
#Deleted in new
chr2	107825668	107825801	ENSG00000230651.7|RGPD4-AS1|lncRNA|chr2:107825668:107825801:-	0	-
#Deleted in new
chr2	107825668	107826126	ENSG00000230651.7|RGPD4-AS1|lncRNA|chr2:107825668:107826126:-	0	-
#Deleted in new
chr2	107825668	107826455	ENSG00000230651.7|RGPD4-AS1|lncRNA|chr2:107825668:107826455:-	0	-
#Deleted in new
chr2	107825740	107826126	ENSG00000230651.7|RGPD4-AS1|lncRNA|chr2:107825740:107826126:-	0	-
#Deleted in new
chr2	107825884	107826126	ENSG00000230651.7|RGPD4-AS1|lncRNA|chr2:107825884:107826126:-	0	-
#Deleted in new
chr2	107826372	107826523	ENSG00000230651.7|RGPD4-AS1|lncRNA|chr2:107826372:107826523:-	0	-
#Partially deleted in new
chr2	107826552	107826836	ENSG00000230651.7|RGPD4-AS1|lncRNA|chr2:107826552:107826836:-	0	-
#Partially deleted in new
chr2	107826640	107826870	ENSG00000230651.7|RGPD4-AS1|lncRNA|chr2:107826640:107826870:-	0	-
#Deleted in new
chr2	108052633	108052755	ENSG00000231221.1|LINC01593|lncRNA|chr2:108052633:108052755:-	0	-
#Deleted in new
chr2	10810242	10810420	ENSG00000143870.12|PDIA6|pc|chr2:10810242:10810420:-	0	-
#Deleted in new
chr2	108167747	108167769	ENSG00000225328.1|LINC01594|lncRNA|chr2:108167747:108167769:-	0	-
#Deleted in new
chr2	108179153	108179281	ENSG00000225328.1|LINC01594|lncRNA|chr2:108179153:108179281:-	0	-
#Deleted in new
chr2	108184457	108184682	ENSG00000225328.1|LINC01594|lncRNA|chr2:108184457:108184682:-	0	-
#Deleted in new
chr2	10819273	10819354	ENSG00000143870.12|PDIA6|pc|chr2:10819273:10819354:-	0	-
#Deleted in new
chr2	10820770	10820864	ENSG00000143870.12|PDIA6|pc|chr2:10820770:10820864:-	0	-
#Deleted in new
chr2	10820770	10820918	ENSG00000143870.12|PDIA6|pc|chr2:10820770:10820918:-	0	-
#Deleted in new
chr2	10821181	10821519	ENSG00000143870.12|PDIA6|pc|chr2:10821181:10821519:-	0	-
#Deleted in new
chr2	108217694	108217841	ENSG00000225328.1|LINC01594|lncRNA|chr2:108217694:108217841:-	0	-
#Deleted in new
chr2	10823119	10823399	ENSG00000143870.12|PDIA6|pc|chr2:10823119:10823399:-	0	-
#Deleted in new
chr2	108298566	108298661	ENSG00000198203.9|SULT1C2|pc|chr2:108298566:108298661:+	0	+
#Partially deleted in new
chr2	108298972	108304700	ENSG00000198203.9|SULT1C2|pc|chr2:108298972:108304700:+	0	+
#Deleted in new
chr2	10832201	10832340	ENSG00000143870.12|PDIA6|pc|chr2:10832201:10832340:-	0	-
#Partially deleted in new
chr2	10832201	10832485	ENSG00000143870.12|PDIA6|pc|chr2:10832201:10832485:-	0	-
#Deleted in new
chr2	10837523	10837977	ENSG00000143870.12|PDIA6|pc|chr2:10837523:10837977:-	0	-
#Partially deleted in new
chr2	108381761	108382922	ENSG00000198075.9|SULT1C4|pc|chr2:108381761:108382922:+	0	+
#Partially deleted in new
chr2	108387319	108388057	ENSG00000198075.9|SULT1C4|pc|chr2:108387319:108388057:+	0	+
#Partially deleted in new
chr2	108448560	108449280	ENSG00000135968.20|GCC2|pc|chr2:108448560:108449280:+	0	+
#Deleted in new
chr2	108462587	108462685	ENSG00000135968.20|GCC2|pc|chr2:108462587:108462685:+	0	+
#Deleted in new
chr2	108469299	108469332	ENSG00000135968.20|GCC2|pc|chr2:108469299:108469332:+	0	+
#Partially deleted in new
chr2	108469299	108469456	ENSG00000135968.20|GCC2|pc|chr2:108469299:108469456:+	0	+
#Deleted in new
chr2	108511688	108512012	ENSG00000214184.3|GCC2-AS1|lncRNA|chr2:108511688:108512012:-	0	-
#Deleted in new
chr2	108511929	108512012	ENSG00000214184.3|GCC2-AS1|lncRNA|chr2:108511929:108512012:-	0	-
#Deleted in new
chr2	108607160	108607255	ENSG00000169756.16|LIMS1|pc|chr2:108607160:108607255:+	0	+
#Deleted in new
chr2	108660615	108660701	ENSG00000169756.16|LIMS1|pc|chr2:108660615:108660701:+	0	+
#Partially deleted in new
chr2	108672879	108673953	ENSG00000169756.16|LIMS1|pc|chr2:108672879:108673953:+	0	+
#Deleted in new
chr2	10878268	10878444	ENSG00000271952.1|LINC01954|lncRNA|chr2:10878268:10878444:+	0	+
#Partially deleted in new
chr2	108882190	108885475	ENSG00000163006.11|CCDC138|pc|chr2:108882190:108885475:+	0	+
#Deleted in new
chr2	108882670	108882791	ENSG00000163006.11|CCDC138|pc|chr2:108882670:108882791:+	0	+
#Deleted in new
chr2	108885101	108885477	ENSG00000163006.11|CCDC138|pc|chr2:108885101:108885477:+	0	+
#Deleted in new
chr2	109594692	109594996	ENSG00000230696.1|AC011753.2|lncRNA|chr2:109594692:109594996:-	0	-
#Deleted in new
chr2	109605392	109605698	ENSG00000230696.1|AC011753.2|lncRNA|chr2:109605392:109605698:-	0	-
#Deleted in new
chr2	109613111	109613510	ENSG00000186522.14|SEPT10|pc|chr2:109613111:109613510:-	0	-
#Deleted in new
chr2	109613420	109613504	ENSG00000186522.14|SEPT10|pc|chr2:109613420:109613504:-	0	-
#Partially deleted in new
chr2	109758798	109759556	ENSG00000282033.1|AC074387.1|lncRNA|chr2:109758798:109759556:-	0	-
#Deleted in new
chr2	109792757	109792989	ENSG00000015568.12|RGPD5|pc|chr2:109792757:109792989:+	0	+
#Deleted in new
chr2	109832850	109832963	ENSG00000015568.12|RGPD5|pc|chr2:109832850:109832963:+	0	+
#Deleted in new
chr2	109832850	109833019	ENSG00000015568.12|RGPD5|pc|chr2:109832850:109833019:+	0	+
#Duplicated in new
chr2	109835818	109835916	ENSG00000015568.12|RGPD5|pc|chr2:109835818:109835916:+	0	+
#Duplicated in new
chr2	109837882	109838042	ENSG00000015568.12|RGPD5|pc|chr2:109837882:109838042:+	0	+
#Deleted in new
chr2	109933087	109933205	ENSG00000284337.1|AC013271.1|pc|chr2:109933087:109933205:+	0	+
#Deleted in new
chr2	109933087	109934429	ENSG00000284337.1|AC013271.1|pc|chr2:109933087:109934429:+	0	+
#Deleted in new
chr2	109934811	109934894	ENSG00000284337.1|AC013271.1|pc|chr2:109934811:109934894:+	0	+
#Deleted in new
chr2	109936177	109936338	ENSG00000284337.1|AC013271.1|pc|chr2:109936177:109936338:+	0	+
#Deleted in new
chr2	109936718	109936943	ENSG00000284337.1|AC013271.1|pc|chr2:109936718:109936943:+	0	+
#Deleted in new
chr2	109937437	109938072	ENSG00000283684.1|AC013268.5|lncRNA|chr2:109937437:109938072:+	0	+
#Deleted in new
chr2	109937974	109938072	ENSG00000284337.1|AC013271.1|pc|chr2:109937974:109938072:+	0	+
#Deleted in new
chr2	109947363	109947453	ENSG00000283684.1|AC013268.5|lncRNA|chr2:109947363:109947453:+	0	+
#Deleted in new
chr2	109947363	109947845	ENSG00000284337.1|AC013271.1|pc|chr2:109947363:109947845:+	0	+
#Deleted in new
chr2	109947632	109947845	ENSG00000283684.1|AC013268.5|lncRNA|chr2:109947632:109947845:+	0	+
#Deleted in new
chr2	109963468	109963550	ENSG00000284337.1|AC013271.1|pc|chr2:109963468:109963550:+	0	+
#Deleted in new
chr2	109964687	109964802	ENSG00000284337.1|AC013271.1|pc|chr2:109964687:109964802:+	0	+
#Deleted in new
chr2	109968069	109968557	ENSG00000284337.1|AC013271.1|pc|chr2:109968069:109968557:+	0	+
#Deleted in new
chr2	109993634	109993819	ENSG00000204588.5|LINC01123|lncRNA|chr2:109993634:109993819:+	0	+
#Deleted in new
chr2	109994400	109995281	ENSG00000204588.5|LINC01123|lncRNA|chr2:109994400:109995281:+	0	+
#Partially deleted in new
chr2	109994400	109996140	ENSG00000204588.5|LINC01123|lncRNA|chr2:109994400:109996140:+	0	+
#Deleted in new
chr21	10122272	10122332	ENSG00000279851.2|CR382287.2|lncRNA|chr21:10122272:10122332:+	0	+
#Deleted in new
chr2	110212791	110212823	ENSG00000175701.10|LINC00116|pc|chr2:110212791:110212823:-	0	-
#Deleted in new
chr2	110214785	110214957	ENSG00000175701.10|LINC00116|pc|chr2:110214785:110214957:-	0	-
#Deleted in new
chr2	110215676	110215807	ENSG00000175701.10|LINC00116|pc|chr2:110215676:110215807:-	0	-
#Deleted in new
chr2	110216663	110216763	ENSG00000175701.10|LINC00116|pc|chr2:110216663:110216763:-	0	-
#Deleted in new
chr2	110217658	110217788	ENSG00000175701.10|LINC00116|pc|chr2:110217658:110217788:-	0	-
#Deleted in new
chr2	110219650	110219777	ENSG00000175701.10|LINC00116|pc|chr2:110219650:110219777:-	0	-
#Deleted in new
chr2	110222736	110222939	ENSG00000175701.10|LINC00116|pc|chr2:110222736:110222939:-	0	-
#Deleted in new
chr2	110244987	110245420	ENSG00000175701.10|LINC00116|pc|chr2:110244987:110245420:-	0	-
#Deleted in new
chr2	110245590	110245793	ENSG00000282304.1|AC140479.5|lncRNA|chr2:110245590:110245793:+	0	+
#Deleted in new
chr2	110245655	110245793	ENSG00000282304.1|AC140479.5|lncRNA|chr2:110245655:110245793:+	0	+
#Deleted in new
chr2	110245696	110245793	ENSG00000282304.1|AC140479.5|lncRNA|chr2:110245696:110245793:+	0	+
#Deleted in new
chr2	110261431	110261513	ENSG00000282304.1|AC140479.5|lncRNA|chr2:110261431:110261513:+	0	+
#Deleted in new
chr2	110262650	110262765	ENSG00000282304.1|AC140479.5|lncRNA|chr2:110262650:110262765:+	0	+
#Deleted in new
chr21	10328410	10329038	ENSG00000277693.1|AP003900.1|lncRNA|chr21:10328410:10329038:-	0	-
#Deleted in new
chr21	10328935	10329038	ENSG00000277693.1|AP003900.1|lncRNA|chr21:10328935:10329038:-	0	-
#Deleted in new
chr21	10338454	10338566	ENSG00000277693.1|AP003900.1|lncRNA|chr21:10338454:10338566:-	0	-
#Deleted in new
chr2	1103404	1103442	ENSG00000172554.11|SNTG2|pc|chr2:1103404:1103442:+	0	+
#Deleted in new
chr21	10340413	10340478	ENSG00000277693.1|AP003900.1|lncRNA|chr21:10340413:10340478:-	0	-
#Deleted in new
chr21	10342615	10342669	ENSG00000277693.1|AP003900.1|lncRNA|chr21:10342615:10342669:-	0	-
#Deleted in new
chr21	10342615	10342737	ENSG00000277693.1|AP003900.1|lncRNA|chr21:10342615:10342737:-	0	-
#Deleted in new
chr2	110377649	110377834	ENSG00000175772.10|LINC01106|lncRNA|chr2:110377649:110377834:-	0	-
#Deleted in new
chr2	110402933	110403421	ENSG00000257207.5|AC112229.3|pc|chr2:110402933:110403421:-	0	-
#Deleted in new
chr2	110406687	110406802	ENSG00000257207.5|AC112229.3|pc|chr2:110406687:110406802:-	0	-
#Deleted in new
chr2	110407937	110408019	ENSG00000257207.5|AC112229.3|pc|chr2:110407937:110408019:-	0	-
#Deleted in new
chr2	110423660	110423873	ENSG00000273471.1|AC112229.4|lncRNA|chr2:110423660:110423873:-	0	-
#Deleted in new
chr2	110423660	110424142	ENSG00000257207.5|AC112229.3|pc|chr2:110423660:110424142:-	0	-
#Deleted in new
chr2	110424052	110424142	ENSG00000273471.1|AC112229.4|lncRNA|chr2:110424052:110424142:-	0	-
#Deleted in new
chr2	110433435	110433533	ENSG00000257207.5|AC112229.3|pc|chr2:110433435:110433533:-	0	-
#Deleted in new
chr2	110433435	110433673	ENSG00000273471.1|AC112229.4|lncRNA|chr2:110433435:110433673:-	0	-
#Deleted in new
chr2	110434564	110434789	ENSG00000257207.5|AC112229.3|pc|chr2:110434564:110434789:-	0	-
#Deleted in new
chr2	110435169	110435330	ENSG00000257207.5|AC112229.3|pc|chr2:110435169:110435330:-	0	-
#Deleted in new
chr2	110436613	110436696	ENSG00000257207.5|AC112229.3|pc|chr2:110436613:110436696:-	0	-
#Deleted in new
chr2	110438302	110438420	ENSG00000257207.5|AC112229.3|pc|chr2:110438302:110438420:-	0	-
#Deleted in new
chr21	10524579	10524688	ENSG00000273840.1|AF254983.1|lncRNA|chr21:10524579:10524688:+	0	+
#Deleted in new
chr21	10524579	10524688	ENSG00000274391.4|TPTE|pc|chr21:10524579:10524688:+	0	+
#Deleted in new
chr21	10527354	10527412	ENSG00000273840.1|AF254983.1|lncRNA|chr21:10527354:10527412:+	0	+
#Deleted in new
chr21	10527354	10527412	ENSG00000274391.4|TPTE|pc|chr21:10527354:10527412:+	0	+
#Deleted in new
chr2	110538487	110538656	ENSG00000183054.11|RGPD6|pc|chr2:110538487:110538656:-	0	-
#Deleted in new
chr21	10538680	10538734	ENSG00000273840.1|AF254983.1|lncRNA|chr21:10538680:10538734:+	0	+
#Deleted in new
chr21	10538680	10538734	ENSG00000274391.4|TPTE|pc|chr21:10538680:10538734:+	0	+
#Deleted in new
chr21	10541111	10541165	ENSG00000273840.1|AF254983.1|lncRNA|chr21:10541111:10541165:+	0	+
#Deleted in new
chr21	10541111	10541165	ENSG00000274391.4|TPTE|pc|chr21:10541111:10541165:+	0	+
#Deleted in new
chr21	10542394	10542448	ENSG00000273840.1|AF254983.1|lncRNA|chr21:10542394:10542448:+	0	+
#Deleted in new
chr21	10542394	10542448	ENSG00000274391.4|TPTE|pc|chr21:10542394:10542448:+	0	+
#Deleted in new
chr21	10543328	10543382	ENSG00000274391.4|TPTE|pc|chr21:10543328:10543382:+	0	+
#Partially deleted in new
chr2	110611937	110612404	ENSG00000231536.1|AC226101.2|lncRNA|chr2:110611937:110612404:+	0	+
#Deleted in new
chr2	110642448	110642790	ENSG00000169679.14|BUB1|pc|chr2:110642448:110642790:-	0	-
#Deleted in new
chr2	110676532	110676623	ENSG00000169679.14|BUB1|pc|chr2:110676532:110676623:-	0	-
#Deleted in new
chr2	110676576	110676623	ENSG00000169679.14|BUB1|pc|chr2:110676576:110676623:-	0	-
#Deleted in new
chr2	110709574	110713429	ENSG00000235881.2|AC114776.1|lncRNA|chr2:110709574:110713429:-	0	-
#Deleted in new
chr2	110716055	110716595	ENSG00000235881.2|AC114776.1|lncRNA|chr2:110716055:110716595:-	0	-
#Partially deleted in new
chr2	11105316	11105662	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11105316:11105662:-	0	-
#Deleted in new
chr2	11106695	11106787	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11106695:11106787:-	0	-
#Partially deleted in new
chr2	111093486	111094223	ENSG00000153093.18|ACOXL|pc|chr2:111093486:111094223:+	0	+
#Partially deleted in new
chr2	111093486	111094344	ENSG00000153093.18|ACOXL|pc|chr2:111093486:111094344:+	0	+
#Partially deleted in new
chr2	111098344	111101143	ENSG00000204581.2|ACOXL-AS1|lncRNA|chr2:111098344:111101143:-	0	-
#Deleted in new
chr2	111101068	111101251	ENSG00000153093.18|ACOXL|pc|chr2:111101068:111101251:+	0	+
#Deleted in new
chr2	111101896	111102076	ENSG00000204581.2|ACOXL-AS1|lncRNA|chr2:111101896:111102076:-	0	-
#Deleted in new
chr2	111112933	111113157	ENSG00000204581.2|ACOXL-AS1|lncRNA|chr2:111112933:111113157:-	0	-
#Deleted in new
chr2	111128626	111128837	ENSG00000153094.22|BCL2L11|pc|chr2:111128626:111128837:+	0	+
#Deleted in new
chr2	111128626	111128844	ENSG00000153094.22|BCL2L11|pc|chr2:111128626:111128844:+	0	+
#Deleted in new
chr2	111130131	111130247	ENSG00000153094.22|BCL2L11|pc|chr2:111130131:111130247:+	0	+
#Partially deleted in new
chr2	111142312	111142391	ENSG00000153094.22|BCL2L11|pc|chr2:111142312:111142391:+	0	+
#Deleted in new
chr2	111196919	111197194	ENSG00000172965.14|MIR4435-2HG|lncRNA|chr2:111196919:111197194:-	0	-
#Deleted in new
chr2	111206204	111206494	ENSG00000230499.1|AC108463.2|lncRNA|chr2:111206204:111206494:+	0	+
#Deleted in new
chr2	11120762	11120962	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11120762:11120962:-	0	-
#Deleted in new
chr2	111207775	111208661	ENSG00000172965.14|MIR4435-2HG|lncRNA|chr2:111207775:111208661:-	0	-
#Deleted in new
chr2	111210994	111212476	ENSG00000271590.1|AC108463.3|lncRNA|chr2:111210994:111212476:-	0	-
#Deleted in new
chr2	11123151	11123289	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11123151:11123289:-	0	-
#Partially deleted in new
chr2	11124218	11124785	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11124218:11124785:-	0	-
#Deleted in new
chr2	111247429	111247558	ENSG00000172965.14|MIR4435-2HG|lncRNA|chr2:111247429:111247558:-	0	-
#Partially deleted in new
chr2	11124757	11124785	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11124757:11124785:-	0	-
#Deleted in new
chr2	111248147	111248241	ENSG00000172965.14|MIR4435-2HG|lncRNA|chr2:111248147:111248241:-	0	-
#Deleted in new
chr2	111248149	111248241	ENSG00000172965.14|MIR4435-2HG|lncRNA|chr2:111248149:111248241:-	0	-
#Deleted in new
chr2	111265282	111265463	ENSG00000229118.1|AC068491.2|lncRNA|chr2:111265282:111265463:+	0	+
#Deleted in new
chr2	111279444	111279880	ENSG00000229118.1|AC068491.2|lncRNA|chr2:111279444:111279880:+	0	+
#Deleted in new
chr2	11128538	11128886	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11128538:11128886:-	0	-
#Deleted in new
chr2	11128720	11128886	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11128720:11128886:-	0	-
#Deleted in new
chr2	11128983	11129098	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11128983:11129098:-	0	-
#Deleted in new
chr2	11129326	11129452	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11129326:11129452:-	0	-
#Partially deleted in new
chr2	11131997	11132221	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11131997:11132221:-	0	-
#Partially deleted in new
chr2	11132014	11132176	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11132014:11132176:-	0	-
#Deleted in new
chr2	11132272	11132770	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11132272:11132770:-	0	-
#Deleted in new
chr2	11132272	11132821	ENSG00000145063.14|AC062028.1|lncRNA|chr2:11132272:11132821:-	0	-
#Deleted in new
chr2	111365560	111365714	ENSG00000172965.14|MIR4435-2HG|lncRNA|chr2:111365560:111365714:-	0	-
#Partially deleted in new
chr2	11143919	11146024	ENSG00000150873.11|C2orf50|pc|chr2:11143919:11146024:+	0	+
#Deleted in new
chr2	11146536	11146790	ENSG00000150873.11|C2orf50|pc|chr2:11146536:11146790:+	0	+
#Deleted in new
chr2	111468809	111468835	ENSG00000280878.1|AC017002.5|lncRNA|chr2:111468809:111468835:+	0	+
#Deleted in new
chr2	111469602	111469987	ENSG00000172965.14|MIR4435-2HG|lncRNA|chr2:111469602:111469987:-	0	-
#Deleted in new
chr2	111469637	111469987	ENSG00000172965.14|MIR4435-2HG|lncRNA|chr2:111469637:111469987:-	0	-
#Deleted in new
chr2	111469786	111469987	ENSG00000172965.14|MIR4435-2HG|lncRNA|chr2:111469786:111469987:-	0	-
#Deleted in new
chr2	111471988	111472097	ENSG00000172965.14|MIR4435-2HG|lncRNA|chr2:111471988:111472097:-	0	-
#Deleted in new
chr2	111477335	111477481	ENSG00000172965.14|MIR4435-2HG|lncRNA|chr2:111477335:111477481:-	0	-
#Deleted in new
chr2	111510623	111510990	ENSG00000240350.2|AC017002.3|lncRNA|chr2:111510623:111510990:+	0	+
#Deleted in new
chr2	111544202	111544287	ENSG00000240350.2|AC017002.3|lncRNA|chr2:111544202:111544287:+	0	+
#Deleted in new
chr2	111570927	111570974	ENSG00000240350.2|AC017002.3|lncRNA|chr2:111570927:111570974:+	0	+
#Deleted in new
chr2	111607840	111608015	ENSG00000225744.1|AC017002.2|lncRNA|chr2:111607840:111608015:+	0	+
#Deleted in new
chr2	111611901	111612518	ENSG00000225744.1|AC017002.2|lncRNA|chr2:111611901:111612518:+	0	+
#Deleted in new
chr2	111637122	111637967	ENSG00000280878.1|AC017002.5|lncRNA|chr2:111637122:111637967:+	0	+
#Deleted in new
chr2	11172750	11172824	ENSG00000162976.12|PQLC3|pc|chr2:11172750:11172824:+	0	+
#Deleted in new
chr2	111766270	111766995	ENSG00000153107.11|ANAPC1|pc|chr2:111766270:111766995:-	0	-
#Partially deleted in new
chr2	111856377	111856679	ENSG00000153107.11|ANAPC1|pc|chr2:111856377:111856679:-	0	-
#Deleted in new
chr2	111994705	111994720	ENSG00000153208.16|MERTK|pc|chr2:111994705:111994720:+	0	+
#Deleted in new
chr2	111996151	111996176	ENSG00000153208.16|MERTK|pc|chr2:111996151:111996176:+	0	+
#Deleted in new
chr2	111996460	111996488	ENSG00000153208.16|MERTK|pc|chr2:111996460:111996488:+	0	+
#Deleted in new
chr2	111996534	111996548	ENSG00000153208.16|MERTK|pc|chr2:111996534:111996548:+	0	+
#Deleted in new
chr2	111996934	111996968	ENSG00000153208.16|MERTK|pc|chr2:111996934:111996968:+	0	+
#Deleted in new
chr2	112013239	112013265	ENSG00000153208.16|MERTK|pc|chr2:112013239:112013265:+	0	+
#Deleted in new
chr2	112013538	112013558	ENSG00000153208.16|MERTK|pc|chr2:112013538:112013558:+	0	+
#Deleted in new
chr2	112015802	112015809	ENSG00000153208.16|MERTK|pc|chr2:112015802:112015809:+	0	+
#Deleted in new
chr2	112024856	112024871	ENSG00000153208.16|MERTK|pc|chr2:112024856:112024871:+	0	+
#Deleted in new
chr2	112026165	112026193	ENSG00000153208.16|MERTK|pc|chr2:112026165:112026193:+	0	+
#Partially deleted in new
chr2	112151298	112153258	ENSG00000144152.12|FBLN7|pc|chr2:112151298:112153258:+	0	+
#Partially deleted in new
chr2	112188363	112190635	ENSG00000278962.1|AC092645.1|lncRNA|chr2:112188363:112190635:+	0	+
#Partially deleted in new
chr2	112211524	112216468	ENSG00000144161.12|ZC3H8|pc|chr2:112211524:112216468:-	0	-
#Deleted in new
chr2	112215864	112216468	ENSG00000144161.12|ZC3H8|pc|chr2:112215864:112216468:-	0	-
#Deleted in new
chr2	112215875	112216468	ENSG00000144161.12|ZC3H8|pc|chr2:112215875:112216468:-	0	-
#Deleted in new
chr2	112215904	112216468	ENSG00000144161.12|ZC3H8|pc|chr2:112215904:112216468:-	0	-
#Deleted in new
chr2	112240367	112240492	ENSG00000144161.12|ZC3H8|pc|chr2:112240367:112240492:-	0	-
#Deleted in new
chr2	11234203	11234670	ENSG00000134318.13|ROCK2|pc|chr2:11234203:11234670:-	0	-
#Deleted in new
chr2	112393050	112393219	ENSG00000169629.11|RGPD8|pc|chr2:112393050:112393219:-	0	-
#Deleted in new
chr2	112433621	112433754	ENSG00000169629.11|RGPD8|pc|chr2:112433621:112433754:-	0	-
#Deleted in new
chr2	112434047	112434488	ENSG00000169629.11|RGPD8|pc|chr2:112434047:112434488:-	0	-
#Partially deleted in new
chr2	112528680	112541739	ENSG00000114999.7|TTL|pc|chr2:112528680:112541739:+	0	+
#Deleted in new
chr2	112545830	112545922	ENSG00000125630.15|POLR1B|pc|chr2:112545830:112545922:+	0	+
#Deleted in new
chr2	112553384	112553690	ENSG00000125630.15|POLR1B|pc|chr2:112553384:112553690:+	0	+
#Deleted in new
chr2	112554523	112554578	ENSG00000125630.15|POLR1B|pc|chr2:112554523:112554578:+	0	+
#Deleted in new
chr2	112584871	112584918	ENSG00000125611.15|CHCHD5|pc|chr2:112584871:112584918:+	0	+
#Deleted in new
chr2	112590795	112590880	ENSG00000228251.1|AC012442.1|lncRNA|chr2:112590795:112590880:+	0	+
#Partially deleted in new
chr2	112591495	112591939	ENSG00000228251.1|AC012442.1|lncRNA|chr2:112591495:112591939:+	0	+
#Deleted in new
chr2	112614212	112614431	ENSG00000243389.1|AC012442.2|lncRNA|chr2:112614212:112614431:+	0	+
#Deleted in new
chr2	112643958	112644015	ENSG00000237753.1|AC079922.2|lncRNA|chr2:112643958:112644015:-	0	-
#Deleted in new
chr2	112913791	112913854	ENSG00000125571.9|IL37|pc|chr2:112913791:112913854:+	0	+
#Deleted in new
chr2	112915192	112915259	ENSG00000125571.9|IL37|pc|chr2:112915192:112915259:+	0	+
#Deleted in new
chr2	112917128	112917248	ENSG00000125571.9|IL37|pc|chr2:112917128:112917248:+	0	+
#Deleted in new
chr2	112917634	112917777	ENSG00000125571.9|IL37|pc|chr2:112917634:112917777:+	0	+
#Deleted in new
chr2	112918560	112918882	ENSG00000125571.9|IL37|pc|chr2:112918560:112918882:+	0	+
#Deleted in new
chr2	112973202	112973244	ENSG00000136688.10|IL36G|pc|chr2:112973202:112973244:+	0	+
#Deleted in new
chr21	12999675	12999926	ENSG00000229306.1|AP001464.1|lncRNA|chr21:12999675:12999926:-	0	-
#Deleted in new
chr21	13016620	13016692	ENSG00000229306.1|AP001464.1|lncRNA|chr21:13016620:13016692:-	0	-
#Deleted in new
chr2	113022090	113022777	ENSG00000136696.10|IL36B|pc|chr2:113022090:113022777:-	0	-
#Deleted in new
chr2	113107213	113107385	ENSG00000136689.18|IL1RN|pc|chr2:113107213:113107385:+	0	+
#Deleted in new
chr2	113111115	113111199	ENSG00000136689.18|IL1RN|pc|chr2:113111115:113111199:+	0	+
#Deleted in new
chr2	113112999	113113114	ENSG00000136689.18|IL1RN|pc|chr2:113112999:113113114:+	0	+
#Partially deleted in new
chr2	113235791	113236357	ENSG00000189223.14|PAX8-AS1|lncRNA|chr2:113235791:113236357:+	0	+
#Deleted in new
chr2	113238089	113238212	ENSG00000189223.14|PAX8-AS1|lncRNA|chr2:113238089:113238212:+	0	+
#Partially deleted in new
chr2	113239088	113239690	ENSG00000189223.14|PAX8-AS1|lncRNA|chr2:113239088:113239690:+	0	+
#Partially deleted in new
chr2	113239088	113239908	ENSG00000189223.14|PAX8-AS1|lncRNA|chr2:113239088:113239908:+	0	+
#Deleted in new
chr2	113263277	113263334	ENSG00000189223.14|PAX8-AS1|lncRNA|chr2:113263277:113263334:+	0	+
#Deleted in new
chr2	113263277	113263362	ENSG00000189223.14|PAX8-AS1|lncRNA|chr2:113263277:113263362:+	0	+
#Deleted in new
chr2	113263277	113263409	ENSG00000189223.14|PAX8-AS1|lncRNA|chr2:113263277:113263409:+	0	+
#Deleted in new
chr2	113263277	113263454	ENSG00000189223.14|PAX8-AS1|lncRNA|chr2:113263277:113263454:+	0	+
#Deleted in new
chr2	113263361	113263454	ENSG00000189223.14|PAX8-AS1|lncRNA|chr2:113263361:113263454:+	0	+
#Deleted in new
chr21	13314407	13314944	ENSG00000280108.2|AJ239318.1|lncRNA|chr21:13314407:13314944:+	0	+
#Partially deleted in new
chr2	113444963	113445540	ENSG00000136682.14|CBWD2|pc|chr2:113444963:113445540:+	0	+
#Deleted in new
chr2	113512462	113512594	ENSG00000234148.2|LINC01961|lncRNA|chr2:113512462:113512594:+	0	+
#Deleted in new
chr2	113513437	113513548	ENSG00000234148.2|LINC01961|lncRNA|chr2:113513437:113513548:+	0	+
#Deleted in new
chr2	113534559	113534716	ENSG00000231943.7|PGM5P4-AS1|lncRNA|chr2:113534559:113534716:-	0	-
#Deleted in new
chr2	113540051	113540469	ENSG00000231943.7|PGM5P4-AS1|lncRNA|chr2:113540051:113540469:-	0	-
#Deleted in new
chr21	13546979	13547128	ENSG00000228159.1|LINC01674|lncRNA|chr21:13546979:13547128:+	0	+
#Deleted in new
chr21	13556392	13556511	ENSG00000228159.1|LINC01674|lncRNA|chr21:13556392:13556511:+	0	+
#Deleted in new
chr21	13558316	13558461	ENSG00000228159.1|LINC01674|lncRNA|chr21:13558316:13558461:+	0	+
#Deleted in new
chr2	113577981	113578186	ENSG00000226516.7|FAM138B|lncRNA|chr2:113577981:113578186:+	0	+
#Deleted in new
chr2	113577981	113578852	ENSG00000226516.7|FAM138B|lncRNA|chr2:113577981:113578852:+	0	+
#Deleted in new
chr2	113578288	113578852	ENSG00000226516.7|FAM138B|lncRNA|chr2:113578288:113578852:+	0	+
#Deleted in new
chr2	113605866	113607908	ENSG00000279267.1|AL078621.3|lncRNA|chr2:113605866:113607908:-	0	-
#Partially deleted in new
chr21	13609857	13610749	ENSG00000166351.10|POTED|pc|chr21:13609857:13610749:+	0	+
#Deleted in new
chr21	13624312	13624533	ENSG00000166351.10|POTED|pc|chr21:13624312:13624533:+	0	+
#Deleted in new
chr21	13625272	13625542	ENSG00000166351.10|POTED|pc|chr21:13625272:13625542:+	0	+
#Deleted in new
chr2	113627855	113628010	ENSG00000144134.18|RABL2A|pc|chr2:113627855:113628010:+	0	+
#Partially deleted in new
chr2	113672579	113672738	ENSG00000233479.1|AC017074.2|lncRNA|chr2:113672579:113672738:+	0	+
#Deleted in new
chr2	113672868	113673191	ENSG00000233479.1|AC017074.2|lncRNA|chr2:113672868:113673191:+	0	+
#Deleted in new
chr2	113677701	113677783	ENSG00000227359.1|AC017074.1|lncRNA|chr2:113677701:113677783:-	0	-
#Deleted in new
chr21	13679299	13681138	ENSG00000279773.1|AL050303.4|lncRNA|chr21:13679299:13681138:-	0	-
#Deleted in new
chr2	113688160	113688257	ENSG00000227359.1|AC017074.1|lncRNA|chr2:113688160:113688257:-	0	-
#Deleted in new
chr2	113703696	113704078	ENSG00000227359.1|AC017074.1|lncRNA|chr2:113703696:113704078:-	0	-
#Deleted in new
chr2	113705010	113705548	ENSG00000115084.13|SLC35F5|pc|chr2:113705010:113705548:-	0	-
#Deleted in new
chr2	113755854	113755876	ENSG00000115084.13|SLC35F5|pc|chr2:113755854:113755876:-	0	-
#Deleted in new
chr21	13769931	13770213	ENSG00000224922.1|AL050303.1|lncRNA|chr21:13769931:13770213:+	0	+
#Deleted in new
chr21	13771564	13771740	ENSG00000224922.1|AL050303.1|lncRNA|chr21:13771564:13771740:+	0	+
#Partially deleted in new
chr2	113831529	113831727	ENSG00000228857.2|AC104653.1|lncRNA|chr2:113831529:113831727:-	0	-
#Partially deleted in new
chr2	113888202	113889750	ENSG00000270019.1|AC110769.2|lncRNA|chr2:113888202:113889750:-	0	-
#Deleted in new
chr2	113904085	113905258	ENSG00000279957.1|AC110769.3|lncRNA|chr2:113904085:113905258:+	0	+
#Partially deleted in new
chr2	113933855	113934386	ENSG00000115091.11|ACTR3|pc|chr2:113933855:113934386:+	0	+
#Partially deleted in new
chr2	113951719	113955706	ENSG00000115091.11|ACTR3|pc|chr2:113951719:113955706:+	0	+
#Partially deleted in new
chr2	113957359	113962596	ENSG00000115091.11|ACTR3|pc|chr2:113957359:113962596:+	0	+
#Deleted in new
chr2	113979568	113980128	ENSG00000234199.2|LINC01191|lncRNA|chr2:113979568:113980128:+	0	+
#Deleted in new
chr2	113979908	113980128	ENSG00000243179.1|AC110769.1|lncRNA|chr2:113979908:113980128:+	0	+
#Deleted in new
chr2	113982663	113983258	ENSG00000243179.1|AC110769.1|lncRNA|chr2:113982663:113983258:+	0	+
#Deleted in new
chr2	11399001	11399218	ENSG00000224177.6|LINC00570|lncRNA|chr2:11399001:11399218:+	0	+
#Deleted in new
chr2	11399053	11399218	ENSG00000224177.6|LINC00570|lncRNA|chr2:11399053:11399218:+	0	+
#Deleted in new
chr2	11399168	11399218	ENSG00000224177.6|LINC00570|lncRNA|chr2:11399168:11399218:+	0	+
#Deleted in new
chr2	11399671	11399774	ENSG00000224177.6|LINC00570|lncRNA|chr2:11399671:11399774:+	0	+
#Deleted in new
chr2	11400371	11400457	ENSG00000224177.6|LINC00570|lncRNA|chr2:11400371:11400457:+	0	+
#Deleted in new
chr2	11402024	11402108	ENSG00000224177.6|LINC00570|lncRNA|chr2:11402024:11402108:+	0	+
#Deleted in new
chr2	11402024	11402258	ENSG00000224177.6|LINC00570|lncRNA|chr2:11402024:11402258:+	0	+
#Deleted in new
chr2	11402024	11402261	ENSG00000224177.6|LINC00570|lncRNA|chr2:11402024:11402261:+	0	+
#Deleted in new
chr21	14083949	14084144	ENSG00000224905.6|AP001347.1|lncRNA|chr21:14083949:14084144:+	0	+
#Deleted in new
chr2	114122273	114122462	ENSG00000235242.1|AC010982.1|lncRNA|chr2:114122273:114122462:-	0	-
#Deleted in new
chr21	14206814	14206949	ENSG00000188992.11|LIPI|pc|chr21:14206814:14206949:-	0	-
#Partially deleted in new
chr21	14221096	14221453	ENSG00000185272.13|RBM11|pc|chr21:14221096:14221453:+	0	+
#Deleted in new
chr2	114461576	114462140	ENSG00000175497.16|DPP10|pc|chr2:114461576:114462140:+	0	+
#Deleted in new
chr2	114461602	114462140	ENSG00000175497.16|DPP10|pc|chr2:114461602:114462140:+	0	+
#Deleted in new
chr2	114463394	114463426	ENSG00000175497.16|DPP10|pc|chr2:114463394:114463426:+	0	+
#Deleted in new
chr2	11455341	11455474	ENSG00000169016.16|E2F6|pc|chr2:11455341:11455474:-	0	-
#Deleted in new
chr2	11458280	11458351	ENSG00000169016.16|E2F6|pc|chr2:11458280:11458351:-	0	-
#Deleted in new
chr21	14593719	14594078	ENSG00000243440.6|AF130351.1|pc|chr21:14593719:14594078:-	0	-
#Deleted in new
chr21	14594012	14594078	ENSG00000243440.6|AF130351.1|pc|chr21:14594012:14594078:-	0	-
#Deleted in new
chr21	14594693	14594740	ENSG00000223662.1|SAMSN1-AS1|lncRNA|chr21:14594693:14594740:+	0	+
#Deleted in new
chr21	14746761	14748375	ENSG00000232884.7|AF127936.2|lncRNA|chr21:14746761:14748375:-	0	-
#Deleted in new
chr21	14747745	14748375	ENSG00000232884.7|AF127936.2|lncRNA|chr21:14747745:14748375:-	0	-
#Deleted in new
chr21	14753800	14753863	ENSG00000232884.7|AF127936.2|lncRNA|chr21:14753800:14753863:-	0	-
#Deleted in new
chr21	14762837	14763090	ENSG00000226751.2|AF127936.1|lncRNA|chr21:14762837:14763090:-	0	-
#Deleted in new
chr2	11482340	11482381	ENSG00000196208.13|GREB1|pc|chr2:11482340:11482381:+	0	+
#Deleted in new
chr21	14825522	14825624	ENSG00000235609.7|AF127577.4|lncRNA|chr21:14825522:14825624:-	0	-
#Deleted in new
chr21	14825522	14825624	ENSG00000281903.2|LINC02246|lncRNA|chr21:14825522:14825624:-	0	-
#Deleted in new
chr2	114828431	114828872	ENSG00000231538.1|DPP10-AS3|lncRNA|chr2:114828431:114828872:-	0	-
#Deleted in new
chr2	114833324	114833548	ENSG00000231538.1|DPP10-AS3|lncRNA|chr2:114833324:114833548:-	0	-
#Deleted in new
chr21	14833503	14833656	ENSG00000281903.2|LINC02246|lncRNA|chr21:14833503:14833656:-	0	-
#Deleted in new
chr2	114833829	114834038	ENSG00000235717.1|DPP10-AS2|lncRNA|chr2:114833829:114834038:-	0	-
#Deleted in new
chr21	14852970	14853431	ENSG00000281903.2|LINC02246|lncRNA|chr21:14852970:14853431:-	0	-
#Deleted in new
chr21	14853273	14853431	ENSG00000281903.2|LINC02246|lncRNA|chr21:14853273:14853431:-	0	-
#Deleted in new
chr21	14857541	14857708	ENSG00000235609.7|AF127577.4|lncRNA|chr21:14857541:14857708:-	0	-
#Deleted in new
chr21	14857541	14857708	ENSG00000281903.2|LINC02246|lncRNA|chr21:14857541:14857708:-	0	-
#Deleted in new
chr21	14881886	14881910	ENSG00000281903.2|LINC02246|lncRNA|chr21:14881886:14881910:-	0	-
#Deleted in new
chr21	14881886	14881975	ENSG00000281903.2|LINC02246|lncRNA|chr21:14881886:14881975:-	0	-
#Deleted in new
chr21	14902898	14903015	ENSG00000281903.2|LINC02246|lncRNA|chr21:14902898:14903015:-	0	-
#Deleted in new
chr21	14913462	14913522	ENSG00000281903.2|LINC02246|lncRNA|chr21:14913462:14913522:-	0	-
#Deleted in new
chr21	14971469	14971569	ENSG00000231201.1|AF127577.2|lncRNA|chr21:14971469:14971569:+	0	+
#Deleted in new
chr21	14974214	14974317	ENSG00000231201.1|AF127577.2|lncRNA|chr21:14974214:14974317:+	0	+
#Deleted in new
chr2	115050147	115050219	ENSG00000175497.16|DPP10|pc|chr2:115050147:115050219:+	0	+
#Deleted in new
chr2	115064572	115064805	ENSG00000175497.16|DPP10|pc|chr2:115064572:115064805:+	0	+
#Deleted in new
chr2	115064671	115064805	ENSG00000175497.16|DPP10|pc|chr2:115064671:115064805:+	0	+
#Deleted in new
chr2	115066659	115066818	ENSG00000175497.16|DPP10|pc|chr2:115066659:115066818:+	0	+
#Deleted in new
chr2	115130934	115131101	ENSG00000235026.5|DPP10-AS1|lncRNA|chr2:115130934:115131101:-	0	-
#Deleted in new
chr2	115131826	115131924	ENSG00000235026.5|DPP10-AS1|lncRNA|chr2:115131826:115131924:-	0	-
#Partially deleted in new
chr2	115144047	115144368	ENSG00000235026.5|DPP10-AS1|lncRNA|chr2:115144047:115144368:-	0	-
#Deleted in new
chr2	115144246	115144368	ENSG00000235026.5|DPP10-AS1|lncRNA|chr2:115144246:115144368:-	0	-
#Deleted in new
chr2	115144858	115145027	ENSG00000235026.5|DPP10-AS1|lncRNA|chr2:115144858:115145027:-	0	-
#Deleted in new
chr2	11534115	11534254	ENSG00000196208.13|GREB1|pc|chr2:11534115:11534254:+	0	+
#Deleted in new
chr21	15346651	15346738	ENSG00000280082.1|AF246928.1|lncRNA|chr21:15346651:15346738:+	0	+
#Deleted in new
chr21	15390577	15390618	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15390577:15390618:-	0	-
#Deleted in new
chr21	15393970	15394043	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15393970:15394043:-	0	-
#Deleted in new
chr21	15393970	15394049	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15393970:15394049:-	0	-
#Deleted in new
chr21	15394472	15394506	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15394472:15394506:-	0	-
#Deleted in new
chr21	15394999	15395129	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15394999:15395129:-	0	-
#Deleted in new
chr21	15395462	15395497	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15395462:15395497:-	0	-
#Deleted in new
chr21	15397888	15397984	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15397888:15397984:-	0	-
#Partially deleted in new
chr21	15405574	15405764	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15405574:15405764:-	0	-
#Deleted in new
chr21	15405879	15405929	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15405879:15405929:-	0	-
#Deleted in new
chr2	115440871	115440964	ENSG00000175497.16|DPP10|pc|chr2:115440871:115440964:+	0	+
#Deleted in new
chr21	15477787	15477856	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15477787:15477856:-	0	-
#Deleted in new
chr21	15560715	15560733	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15560715:15560733:-	0	-
#Deleted in new
chr21	15561200	15561512	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15561200:15561512:-	0	-
#Deleted in new
chr21	15571191	15571356	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15571191:15571356:-	0	-
#Deleted in new
chr21	15575269	15575410	ENSG00000229425.2|AJ009632.2|lncRNA|chr21:15575269:15575410:-	0	-
#Deleted in new
chr2	115579113	115579266	ENSG00000175497.16|DPP10|pc|chr2:115579113:115579266:+	0	+
#Deleted in new
chr2	115579113	115580243	ENSG00000175497.16|DPP10|pc|chr2:115579113:115580243:+	0	+
#Deleted in new
chr2	1158309	1158486	ENSG00000236665.1|AC114808.2|lncRNA|chr2:1158309:1158486:-	0	-
#Partially deleted in new
chr2	11587381	11588243	ENSG00000196208.13|GREB1|pc|chr2:11587381:11588243:+	0	+
#Partially deleted in new
chr21	15875995	15877991	ENSG00000155313.15|USP25|pc|chr21:15875995:15877991:+	0	+
#Partially deleted in new
chr2	11591395	11592146	ENSG00000196208.13|GREB1|pc|chr2:11591395:11592146:+	0	+
#Deleted in new
chr2	1160146	1160424	ENSG00000236665.1|AC114808.2|lncRNA|chr2:1160146:1160424:-	0	-
#Deleted in new
chr2	1160431	1161671	ENSG00000172554.11|SNTG2|pc|chr2:1160431:1161671:+	0	+
#Deleted in new
chr21	16291790	16292148	ENSG00000270071.1|AP001172.1|lncRNA|chr21:16291790:16292148:-	0	-
#Deleted in new
chr21	16296602	16296700	ENSG00000270071.1|AP001172.1|lncRNA|chr21:16296602:16296700:-	0	-
#Deleted in new
chr2	1163562	1163725	ENSG00000172554.11|SNTG2|pc|chr2:1163562:1163725:+	0	+
#Deleted in new
chr21	16417138	16417458	ENSG00000270139.1|AP001172.2|lncRNA|chr21:16417138:16417458:-	0	-
#Deleted in new
chr21	16521718	16521804	ENSG00000215386.11|MIR99AHG|lncRNA|chr21:16521718:16521804:+	0	+
#Deleted in new
chr21	16525918	16527019	ENSG00000280432.1|AP000962.2|lncRNA|chr21:16525918:16527019:+	0	+
#Deleted in new
chr21	16574717	16575272	ENSG00000269950.1|AP000962.1|lncRNA|chr21:16574717:16575272:-	0	-
#Deleted in new
chr21	16613449	16613481	ENSG00000215386.11|MIR99AHG|lncRNA|chr21:16613449:16613481:+	0	+
#Deleted in new
chr21	16630826	16630972	ENSG00000228798.1|AP000473.1|lncRNA|chr21:16630826:16630972:+	0	+
#Deleted in new
chr21	16643528	16645065	ENSG00000270093.1|AP000473.2|lncRNA|chr21:16643528:16645065:+	0	+
#Deleted in new
chr2	11673963	11674487	ENSG00000276411.1|AC106875.2|lncRNA|chr2:11673963:11674487:-	0	-
#Deleted in new
chr21	16754518	16754770	ENSG00000237735.2|AF130359.1|lncRNA|chr21:16754518:16754770:-	0	-
#Deleted in new
chr21	16755679	16755798	ENSG00000237735.2|AF130359.1|lncRNA|chr21:16755679:16755798:-	0	-
#Deleted in new
chr2	11676853	11676925	ENSG00000276411.1|AC106875.2|lncRNA|chr2:11676853:11676925:-	0	-
#Deleted in new
chr2	11681459	11681492	ENSG00000228496.1|AC106875.1|lncRNA|chr2:11681459:11681492:+	0	+
#Deleted in new
chr2	11681460	11681492	ENSG00000228496.1|AC106875.1|lncRNA|chr2:11681460:11681492:+	0	+
#Deleted in new
chr21	16815621	16815688	ENSG00000237735.2|AF130359.1|lncRNA|chr21:16815621:16815688:-	0	-
#Partially deleted in new
chr2	11682190	11683328	ENSG00000228496.1|AC106875.1|lncRNA|chr2:11682190:11683328:+	0	+
#Partially deleted in new
chr2	11682297	11683323	ENSG00000228496.1|AC106875.1|lncRNA|chr2:11682297:11683323:+	0	+
#Deleted in new
chr21	16862874	16862976	ENSG00000232886.1|AF212831.1|lncRNA|chr21:16862874:16862976:-	0	-
#Deleted in new
chr2	11741348	11741428	ENSG00000134324.11|LPIN1|pc|chr2:11741348:11741428:+	0	+
#Deleted in new
chr2	11742014	11742151	ENSG00000134324.11|LPIN1|pc|chr2:11742014:11742151:+	0	+
#Deleted in new
chr2	11742036	11742156	ENSG00000230790.2|AC012456.2|lncRNA|chr2:11742036:11742156:-	0	-
#Partially deleted in new
chr21	17441780	17441843	ENSG00000232560.6|LINC01549|lncRNA|chr21:17441780:17441843:+	0	+
#Deleted in new
chr21	17444082	17444200	ENSG00000232560.6|LINC01549|lncRNA|chr21:17444082:17444200:+	0	+
#Deleted in new
chr2	11745166	11745301	ENSG00000230790.2|AC012456.2|lncRNA|chr2:11745166:11745301:-	0	-
#Deleted in new
chr2	11745906	11746130	ENSG00000134324.11|LPIN1|pc|chr2:11745906:11746130:+	0	+
#Deleted in new
chr2	11745960	11746130	ENSG00000134324.11|LPIN1|pc|chr2:11745960:11746130:+	0	+
#Deleted in new
chr21	17604144	17604276	ENSG00000154640.14|BTG3|pc|chr21:17604144:17604276:-	0	-
#Deleted in new
chr21	17626892	17627049	ENSG00000280594.1|BTG3-AS1|lncRNA|chr21:17626892:17627049:+	0	+
#Deleted in new
chr2	11763022	11763286	ENSG00000134324.11|LPIN1|pc|chr2:11763022:11763286:+	0	+
#Deleted in new
chr21	17633148	17633199	ENSG00000280594.1|BTG3-AS1|lncRNA|chr21:17633148:17633199:+	0	+
#Deleted in new
chr2	11764203	11764289	ENSG00000134324.11|LPIN1|pc|chr2:11764203:11764289:+	0	+
#Deleted in new
chr21	17659275	17659669	ENSG00000226956.1|AP000432.1|lncRNA|chr21:17659275:17659669:-	0	-
#Deleted in new
chr21	17705407	17707455	ENSG00000279648.1|AP000432.2|lncRNA|chr21:17705407:17707455:+	0	+
#Deleted in new
chr2	117757562	117757774	ENSG00000238207.1|AC009312.1|lncRNA|chr2:117757562:117757774:-	0	-
#Deleted in new
chr2	117760372	117760591	ENSG00000238207.1|AC009312.1|lncRNA|chr2:117760372:117760591:-	0	-
#Partially deleted in new
chr21	17763760	17763861	ENSG00000240770.5|C21orf91-OT1|lncRNA|chr21:17763760:17763861:-	0	-
#Deleted in new
chr2	11777206	11777521	ENSG00000134324.11|LPIN1|pc|chr2:11777206:11777521:+	0	+
#Deleted in new
chr2	117785529	117785647	ENSG00000238207.1|AC009312.1|lncRNA|chr2:117785529:117785647:-	0	-
#Deleted in new
chr21	17785547	17785612	ENSG00000240770.5|C21orf91-OT1|lncRNA|chr21:17785547:17785612:-	0	-
#Deleted in new
chr2	117804131	117804174	ENSG00000238207.1|AC009312.1|lncRNA|chr2:117804131:117804174:-	0	-
#Deleted in new
chr21	17808944	17808976	ENSG00000244676.5|AL109761.1|lncRNA|chr21:17808944:17808976:+	0	+
#Deleted in new
chr21	17810494	17810845	ENSG00000244676.5|AL109761.1|lncRNA|chr21:17810494:17810845:+	0	+
#Partially deleted in new
chr21	17811355	17811471	ENSG00000154642.10|C21orf91|pc|chr21:17811355:17811471:-	0	-
#Deleted in new
chr21	17813876	17813929	ENSG00000154642.10|C21orf91|pc|chr21:17813876:17813929:-	0	-
#Deleted in new
chr2	117815687	117815723	ENSG00000088205.12|DDX18|pc|chr2:117815687:117815723:+	0	+
#Deleted in new
chr2	117833936	117834549	ENSG00000236255.1|AC009404.1|lncRNA|chr2:117833936:117834549:+	0	+
#Deleted in new
chr21	17835015	17835826	ENSG00000231755.1|CHODL-AS1|lncRNA|chr21:17835015:17835826:-	0	-
#Deleted in new
chr2	117836349	117836524	ENSG00000236255.1|AC009404.1|lncRNA|chr2:117836349:117836524:+	0	+
#Partially deleted in new
chr2	117836654	117836900	ENSG00000236255.1|AC009404.1|lncRNA|chr2:117836654:117836900:+	0	+
#Deleted in new
chr2	117837657	117838204	ENSG00000236255.1|AC009404.1|lncRNA|chr2:117837657:117838204:+	0	+
#Deleted in new
chr2	117837743	117837984	ENSG00000236255.1|AC009404.1|lncRNA|chr2:117837743:117837984:+	0	+
#Partially deleted in new
chr2	117839181	117841658	ENSG00000236255.1|AC009404.1|lncRNA|chr2:117839181:117841658:+	0	+
#Deleted in new
chr2	117839206	117839389	ENSG00000236255.1|AC009404.1|lncRNA|chr2:117839206:117839389:+	0	+
#Deleted in new
chr21	17840494	17840653	ENSG00000231755.1|CHODL-AS1|lncRNA|chr21:17840494:17840653:-	0	-
#Partially deleted in new
chr21	17885461	17885608	ENSG00000231755.1|CHODL-AS1|lncRNA|chr21:17885461:17885608:-	0	-
#Deleted in new
chr21	17901262	17901424	ENSG00000154645.13|CHODL|pc|chr21:17901262:17901424:+	0	+
#Deleted in new
chr21	17917219	17917400	ENSG00000154645.13|CHODL|pc|chr21:17917219:17917400:+	0	+
#Deleted in new
chr21	17917339	17917400	ENSG00000154645.13|CHODL|pc|chr21:17917339:17917400:+	0	+
#Deleted in new
chr2	117951488	117951701	ENSG00000125633.10|CCDC93|pc|chr2:117951488:117951701:-	0	-
#Deleted in new
chr2	117996723	117997292	ENSG00000235066.6|AC009303.2|lncRNA|chr2:117996723:117997292:+	0	+
#Deleted in new
chr2	117996880	117997292	ENSG00000235066.6|AC009303.2|lncRNA|chr2:117996880:117997292:+	0	+
#Deleted in new
chr2	117997016	117997292	ENSG00000235066.6|AC009303.2|lncRNA|chr2:117997016:117997292:+	0	+
#Deleted in new
chr2	117997062	117997292	ENSG00000235066.6|AC009303.2|lncRNA|chr2:117997062:117997292:+	0	+
#Partially deleted in new
chr2	117997071	117997711	ENSG00000235066.6|AC009303.2|lncRNA|chr2:117997071:117997711:+	0	+
#Deleted in new
chr2	117997853	117998266	ENSG00000235066.6|AC009303.2|lncRNA|chr2:117997853:117998266:+	0	+
#Deleted in new
chr2	117997901	117998322	ENSG00000235066.6|AC009303.2|lncRNA|chr2:117997901:117998322:+	0	+
#Deleted in new
chr2	117997940	117998367	ENSG00000235066.6|AC009303.2|lncRNA|chr2:117997940:117998367:+	0	+
#Deleted in new
chr2	117998252	117998367	ENSG00000235066.6|AC009303.2|lncRNA|chr2:117998252:117998367:+	0	+
#Deleted in new
chr2	117998744	117999480	ENSG00000272895.1|AC009303.3|lncRNA|chr2:117998744:117999480:+	0	+
#Deleted in new
chr2	117999822	118000248	ENSG00000235066.6|AC009303.2|lncRNA|chr2:117999822:118000248:+	0	+
#Partially deleted in new
chr2	118008670	118008954	ENSG00000235066.6|AC009303.2|lncRNA|chr2:118008670:118008954:+	0	+
#Deleted in new
chr21	18022369	18022442	ENSG00000227330.1|AF130417.1|lncRNA|chr21:18022369:18022442:-	0	-
#Deleted in new
chr2	118025247	118025389	ENSG00000235066.6|AC009303.2|lncRNA|chr2:118025247:118025389:+	0	+
#Deleted in new
chr21	18027871	18027971	ENSG00000154645.13|CHODL|pc|chr21:18027871:18027971:+	0	+
#Deleted in new
chr2	118031757	118031808	ENSG00000235066.6|AC009303.2|lncRNA|chr2:118031757:118031808:+	0	+
#Deleted in new
chr2	118031757	118031897	ENSG00000235066.6|AC009303.2|lncRNA|chr2:118031757:118031897:+	0	+
#Deleted in new
chr2	118031839	118031897	ENSG00000235066.6|AC009303.2|lncRNA|chr2:118031839:118031897:+	0	+
#Deleted in new
chr2	118032171	118032359	ENSG00000235066.6|AC009303.2|lncRNA|chr2:118032171:118032359:+	0	+
#Deleted in new
chr21	18099932	18100018	ENSG00000227330.1|AF130417.1|lncRNA|chr21:18099932:18100018:-	0	-
#Deleted in new
chr21	18114766	18114904	ENSG00000227330.1|AF130417.1|lncRNA|chr21:18114766:18114904:-	0	-
#Deleted in new
chr2	118132127	118132372	ENSG00000226856.5|AC093901.1|lncRNA|chr2:118132127:118132372:-	0	-
#Partially deleted in new
chr2	11816152	11819598	ENSG00000134324.11|LPIN1|pc|chr2:11816152:11819598:+	0	+
#Deleted in new
chr21	18460571	18460731	ENSG00000154646.8|TMPRSS15|pc|chr21:18460571:18460731:-	0	-
#Deleted in new
chr21	18477357	18477710	ENSG00000228708.1|AL109763.1|lncRNA|chr21:18477357:18477710:-	0	-
#Deleted in new
chr21	18485798	18485879	ENSG00000154646.8|TMPRSS15|pc|chr21:18485798:18485879:-	0	-
#Deleted in new
chr21	18486491	18486599	ENSG00000228708.1|AL109763.1|lncRNA|chr21:18486491:18486599:-	0	-
#Deleted in new
chr21	18561264	18561691	ENSG00000224141.5|MIR548XHG|lncRNA|chr21:18561264:18561691:-	0	-
#Deleted in new
chr21	18561614	18561691	ENSG00000224141.5|MIR548XHG|lncRNA|chr21:18561614:18561691:-	0	-
#Deleted in new
chr21	18589526	18589620	ENSG00000224141.5|MIR548XHG|lncRNA|chr21:18589526:18589620:-	0	-
#Deleted in new
chr21	18612061	18612293	ENSG00000224141.5|MIR548XHG|lncRNA|chr21:18612061:18612293:-	0	-
#Deleted in new
chr21	18640688	18640839	ENSG00000230233.1|AF240627.1|lncRNA|chr21:18640688:18640839:+	0	+
#Deleted in new
chr2	11865849	11866284	ENSG00000224184.5|MIR3681HG|lncRNA|chr2:11865849:11866284:+	0	+
#Deleted in new
chr2	11865884	11865915	ENSG00000224184.5|MIR3681HG|lncRNA|chr2:11865884:11865915:+	0	+
#Deleted in new
chr21	18737923	18738025	ENSG00000224141.5|MIR548XHG|lncRNA|chr21:18737923:18738025:-	0	-
#Deleted in new
chr21	18752747	18753028	ENSG00000224141.5|MIR548XHG|lncRNA|chr21:18752747:18753028:-	0	-
#Deleted in new
chr21	18752747	18753116	ENSG00000224141.5|MIR548XHG|lncRNA|chr21:18752747:18753116:-	0	-
#Deleted in new
chr21	18759773	18759804	ENSG00000224141.5|MIR548XHG|lncRNA|chr21:18759773:18759804:-	0	-
#Deleted in new
chr21	18759773	18760003	ENSG00000224141.5|MIR548XHG|lncRNA|chr21:18759773:18760003:-	0	-
#Deleted in new
chr21	18917212	18917429	ENSG00000279156.1|AL157359.3|lncRNA|chr21:18917212:18917429:+	0	+
#Deleted in new
chr21	18917933	18918217	ENSG00000232193.1|AL157359.2|lncRNA|chr21:18917933:18918217:-	0	-
#Deleted in new
chr2	118944792	118944925	ENSG00000019169.10|MARCO|pc|chr2:118944792:118944925:+	0	+
#Deleted in new
chr2	118949305	118949922	ENSG00000259094.1|AC013457.1|lncRNA|chr2:118949305:118949922:-	0	-
#Deleted in new
chr2	118952589	118952983	ENSG00000259094.1|AC013457.1|lncRNA|chr2:118952589:118952983:-	0	-
#Deleted in new
chr21	18966947	18967058	ENSG00000226204.1|AL157359.1|lncRNA|chr21:18966947:18967058:-	0	-
#Deleted in new
chr21	19047610	19047684	ENSG00000235965.2|AP000431.2|lncRNA|chr21:19047610:19047684:-	0	-
#Deleted in new
chr21	19130522	19130691	ENSG00000229289.1|AP000431.1|lncRNA|chr21:19130522:19130691:+	0	+
#Deleted in new
chr21	19134123	19134423	ENSG00000229289.1|AP000431.1|lncRNA|chr21:19134123:19134423:+	0	+
#Deleted in new
chr2	119239362	119239430	ENSG00000115107.19|STEAP3|pc|chr2:119239362:119239430:+	0	+
#Deleted in new
chr2	119248313	119249071	ENSG00000229867.1|STEAP3-AS1|lncRNA|chr2:119248313:119249071:-	0	-
#Deleted in new
chr2	119338826	119339085	ENSG00000186132.14|C2orf76|pc|chr2:119338826:119339085:-	0	-
#Deleted in new
chr2	119340158	119340361	ENSG00000186132.14|C2orf76|pc|chr2:119340158:119340361:-	0	-
#Deleted in new
chr2	119429900	119429983	ENSG00000171227.6|TMEM37|pc|chr2:119429900:119429983:+	0	+
#Deleted in new
chr2	119430043	119430403	ENSG00000171227.6|TMEM37|pc|chr2:119430043:119430403:+	0	+
#Deleted in new
chr2	119431868	119431924	ENSG00000171227.6|TMEM37|pc|chr2:119431868:119431924:+	0	+
#Deleted in new
chr2	119432089	119432250	ENSG00000171227.6|TMEM37|pc|chr2:119432089:119432250:+	0	+
#Partially deleted in new
chr2	119478810	119479889	ENSG00000080293.9|SCTR|pc|chr2:119478810:119479889:-	0	-
#Deleted in new
chr2	119480688	119480813	ENSG00000080293.9|SCTR|pc|chr2:119480688:119480813:-	0	-
#Deleted in new
chr2	119484718	119484788	ENSG00000231013.1|AC013275.1|lncRNA|chr2:119484718:119484788:+	0	+
#Deleted in new
chr2	119485838	119486009	ENSG00000231013.1|AC013275.1|lncRNA|chr2:119485838:119486009:+	0	+
#Partially deleted in new
chr2	119485838	119487346	ENSG00000231013.1|AC013275.1|lncRNA|chr2:119485838:119487346:+	0	+
#Deleted in new
chr2	119495473	119495537	ENSG00000080293.9|SCTR|pc|chr2:119495473:119495537:-	0	-
#Deleted in new
chr2	119524828	119525041	ENSG00000080293.9|SCTR|pc|chr2:119524828:119525041:-	0	-
#Deleted in new
chr2	119525177	119525301	ENSG00000080293.9|SCTR|pc|chr2:119525177:119525301:-	0	-
#Deleted in new
chr2	119556036	119556239	ENSG00000163075.12|CFAP221|pc|chr2:119556036:119556239:+	0	+
#Deleted in new
chr2	119557007	119557405	ENSG00000163075.12|CFAP221|pc|chr2:119557007:119557405:+	0	+
#Deleted in new
chr2	119589604	119590253	ENSG00000163075.12|CFAP221|pc|chr2:119589604:119590253:+	0	+
#Deleted in new
chr2	119602617	119602762	ENSG00000163075.12|CFAP221|pc|chr2:119602617:119602762:+	0	+
#Deleted in new
chr2	119602662	119602762	ENSG00000163075.12|CFAP221|pc|chr2:119602662:119602762:+	0	+
#Deleted in new
chr2	119648442	119648651	ENSG00000163075.12|CFAP221|pc|chr2:119648442:119648651:+	0	+
#Partially deleted in new
chr2	119660169	119662251	ENSG00000163075.12|CFAP221|pc|chr2:119660169:119662251:+	0	+
#Deleted in new
chr2	119685657	119686464	ENSG00000144120.12|TMEM177|pc|chr2:119685657:119686464:+	0	+
#Deleted in new
chr2	119685657	119686507	ENSG00000144120.12|TMEM177|pc|chr2:119685657:119686507:+	0	+
#Deleted in new
chr2	119771476	119771620	ENSG00000088179.8|PTPN4|pc|chr2:119771476:119771620:+	0	+
#Deleted in new
chr2	119791154	119791272	ENSG00000088179.8|PTPN4|pc|chr2:119791154:119791272:+	0	+
#Deleted in new
chr21	19893278	19893573	ENSG00000233480.1|LINC01683|lncRNA|chr21:19893278:19893573:-	0	-
#Deleted in new
chr21	19898022	19898084	ENSG00000233480.1|LINC01683|lncRNA|chr21:19898022:19898084:-	0	-
#Deleted in new
chr21	19899700	19899755	ENSG00000233480.1|LINC01683|lncRNA|chr21:19899700:19899755:-	0	-
#Partially deleted in new
chr2	119915178	119916690	ENSG00000088179.8|PTPN4|pc|chr2:119915178:119916690:+	0	+
#Deleted in new
chr2	12007746	12007843	ENSG00000224184.5|MIR3681HG|lncRNA|chr2:12007746:12007843:+	0	+
#Partially deleted in new
chr2	120160566	120160974	ENSG00000115109.13|EPB41L5|pc|chr2:120160566:120160974:+	0	+
#Partially deleted in new
chr2	120216339	120216544	ENSG00000224789.1|AC012363.1|lncRNA|chr2:120216339:120216544:-	0	-
#Deleted in new
chr21	20256751	20257346	ENSG00000233236.1|AP001171.1|lncRNA|chr21:20256751:20257346:-	0	-
#Deleted in new
chr21	20258551	20258820	ENSG00000233236.1|AP001171.1|lncRNA|chr21:20258551:20258820:-	0	-
#Deleted in new
chr2	120280834	120280861	ENSG00000144118.13|RALB|pc|chr2:120280834:120280861:+	0	+
#Deleted in new
chr2	120280834	120280907	ENSG00000144118.13|RALB|pc|chr2:120280834:120280907:+	0	+
#Deleted in new
chr2	120325522	120325620	ENSG00000235840.1|AC012363.2|lncRNA|chr2:120325522:120325620:+	0	+
#Deleted in new
chr2	120325973	120326298	ENSG00000235840.1|AC012363.2|lncRNA|chr2:120325973:120326298:+	0	+
#Deleted in new
chr2	120542908	120543326	ENSG00000237614.1|AC073257.2|lncRNA|chr2:120542908:120543326:-	0	-
#Deleted in new
chr2	120553742	120554069	ENSG00000232140.1|AC073257.1|lncRNA|chr2:120553742:120554069:-	0	-
#Deleted in new
chr2	120558034	120558109	ENSG00000232140.1|AC073257.1|lncRNA|chr2:120558034:120558109:-	0	-
#Deleted in new
chr2	120686634	120686756	ENSG00000229774.1|AC018866.1|lncRNA|chr2:120686634:120686756:-	0	-
#Deleted in new
chr2	120709262	120709478	ENSG00000229774.1|AC018866.1|lncRNA|chr2:120709262:120709478:-	0	-
#Deleted in new
chr2	120710263	120710465	ENSG00000229774.1|AC018866.1|lncRNA|chr2:120710263:120710465:-	0	-
#Deleted in new
chr2	120710263	120710517	ENSG00000229774.1|AC018866.1|lncRNA|chr2:120710263:120710517:-	0	-
#Deleted in new
chr21	20778417	20778547	ENSG00000224924.6|LINC00320|lncRNA|chr21:20778417:20778547:-	0	-
#Deleted in new
chr21	20778642	20778762	ENSG00000224924.6|LINC00320|lncRNA|chr21:20778642:20778762:-	0	-
#Deleted in new
chr21	20778642	20778796	ENSG00000224924.6|LINC00320|lncRNA|chr21:20778642:20778796:-	0	-
#Deleted in new
chr21	20781348	20781474	ENSG00000224924.6|LINC00320|lncRNA|chr21:20781348:20781474:-	0	-
#Deleted in new
chr21	20781569	20781661	ENSG00000224924.6|LINC00320|lncRNA|chr21:20781569:20781661:-	0	-
#Deleted in new
chr21	20782249	20782446	ENSG00000224924.6|LINC00320|lncRNA|chr21:20782249:20782446:-	0	-
#Deleted in new
chr21	20782306	20782442	ENSG00000224924.6|LINC00320|lncRNA|chr21:20782306:20782442:-	0	-
#Deleted in new
chr21	20782306	20782446	ENSG00000224924.6|LINC00320|lncRNA|chr21:20782306:20782446:-	0	-
#Deleted in new
chr21	20786035	20786088	ENSG00000224924.6|LINC00320|lncRNA|chr21:20786035:20786088:-	0	-
#Deleted in new
chr2	12083448	12083618	ENSG00000224184.5|MIR3681HG|lncRNA|chr2:12083448:12083618:+	0	+
#Deleted in new
chr2	120866377	120866791	ENSG00000271709.1|AC017033.1|lncRNA|chr2:120866377:120866791:-	0	-
#Deleted in new
chr2	1210456	1210679	ENSG00000172554.11|SNTG2|pc|chr2:1210456:1210679:+	0	+
#Deleted in new
chr2	121081436	121082042	ENSG00000234455.1|AC067960.1|lncRNA|chr2:121081436:121082042:-	0	-
#Deleted in new
chr2	121088520	121088726	ENSG00000234455.1|AC067960.1|lncRNA|chr2:121088520:121088726:-	0	-
#Deleted in new
chr2	121178326	121178387	ENSG00000236145.1|AC079988.1|lncRNA|chr2:121178326:121178387:+	0	+
#Deleted in new
chr21	21239341	21239411	ENSG00000154654.14|NCAM2|pc|chr21:21239341:21239411:+	0	+
#Deleted in new
chr21	21290076	21290151	ENSG00000154654.14|NCAM2|pc|chr21:21290076:21290151:+	0	+
#Deleted in new
chr2	12131305	12131548	ENSG00000224184.5|MIR3681HG|lncRNA|chr2:12131305:12131548:+	0	+
#Deleted in new
chr2	12131305	12131585	ENSG00000224184.5|MIR3681HG|lncRNA|chr2:12131305:12131585:+	0	+
#Deleted in new
chr2	121512982	121513073	ENSG00000074054.17|CLASP1|pc|chr2:121512982:121513073:-	0	-
#Deleted in new
chr2	121532377	121532705	ENSG00000265451.1|AC012447.1|lncRNA|chr2:121532377:121532705:+	0	+
#Deleted in new
chr21	21566762	21566963	ENSG00000234730.1|AP001117.1|lncRNA|chr21:21566762:21566963:+	0	+
#Deleted in new
chr21	21655037	21655107	ENSG00000237527.1|AF241725.1|lncRNA|chr21:21655037:21655107:-	0	-
#Deleted in new
chr21	21659019	21659109	ENSG00000237527.1|AF241725.1|lncRNA|chr21:21659019:21659109:-	0	-
#Deleted in new
chr21	21686248	21686329	ENSG00000237527.1|AF241725.1|lncRNA|chr21:21686248:21686329:-	0	-
#Deleted in new
chr2	121688202	121689714	ENSG00000279721.1|AC018737.2|lncRNA|chr2:121688202:121689714:+	0	+
#Deleted in new
chr2	121705767	121705907	ENSG00000236859.6|NIFK-AS1|lncRNA|chr2:121705767:121705907:+	0	+
#Deleted in new
chr21	21723292	21723774	ENSG00000238265.1|LINC00317|lncRNA|chr21:21723292:21723774:-	0	-
#Deleted in new
chr21	21727031	21727093	ENSG00000238265.1|LINC00317|lncRNA|chr21:21727031:21727093:-	0	-
#Duplicated in new
chr2	121727802	121728481	ENSG00000236859.6|NIFK-AS1|lncRNA|chr2:121727802:121728481:+	0	+
#Deleted in new
chr2	121728476	121728536	ENSG00000155438.11|NIFK|pc|chr2:121728476:121728536:-	0	-
#Deleted in new
chr2	121728476	121728599	ENSG00000155438.11|NIFK|pc|chr2:121728476:121728599:-	0	-
#Deleted in new
chr2	121728506	121728536	ENSG00000155438.11|NIFK|pc|chr2:121728506:121728536:-	0	-
#Deleted in new
chr2	121737102	121737185	ENSG00000211460.11|TSN|pc|chr2:121737102:121737185:+	0	+
#Deleted in new
chr21	21737251	21737319	ENSG00000238265.1|LINC00317|lncRNA|chr21:21737251:21737319:-	0	-
#Deleted in new
chr21	21746972	21747043	ENSG00000233997.5|LINC01425|lncRNA|chr21:21746972:21747043:+	0	+
#Deleted in new
chr21	21746984	21747043	ENSG00000233997.5|LINC01425|lncRNA|chr21:21746984:21747043:+	0	+
#Deleted in new
chr21	21748394	21748684	ENSG00000233997.5|LINC01425|lncRNA|chr21:21748394:21748684:+	0	+
#Deleted in new
chr21	21784972	21785053	ENSG00000233997.5|LINC01425|lncRNA|chr21:21784972:21785053:+	0	+
#Partially deleted in new
chr2	121790491	121790519	ENSG00000224655.5|LINC01823|lncRNA|chr2:121790491:121790519:+	0	+
#Deleted in new
chr2	121791130	121791453	ENSG00000224655.5|LINC01823|lncRNA|chr2:121791130:121791453:+	0	+
#Deleted in new
chr2	121793188	121793235	ENSG00000224655.5|LINC01823|lncRNA|chr2:121793188:121793235:+	0	+
#Deleted in new
chr2	121794497	121794722	ENSG00000224655.5|LINC01823|lncRNA|chr2:121794497:121794722:+	0	+
#Deleted in new
chr2	121796240	121796356	ENSG00000224655.5|LINC01823|lncRNA|chr2:121796240:121796356:+	0	+
#Deleted in new
chr2	121796240	121796702	ENSG00000224655.5|LINC01823|lncRNA|chr2:121796240:121796702:+	0	+
#Deleted in new
chr21	21797178	21797415	ENSG00000233997.5|LINC01425|lncRNA|chr21:21797178:21797415:+	0	+
#Deleted in new
chr21	21933314	21933599	ENSG00000227075.1|AP000472.1|lncRNA|chr21:21933314:21933599:-	0	-
#Deleted in new
chr21	21975559	21975681	ENSG00000227075.1|AP000472.1|lncRNA|chr21:21975559:21975681:-	0	-
#Deleted in new
chr21	22008943	22009358	ENSG00000233215.5|LINC01687|lncRNA|chr21:22008943:22009358:-	0	-
#Deleted in new
chr21	22009157	22009358	ENSG00000233215.5|LINC01687|lncRNA|chr21:22009157:22009358:-	0	-
#Deleted in new
chr21	22016299	22016410	ENSG00000233215.5|LINC01687|lncRNA|chr21:22016299:22016410:-	0	-
#Deleted in new
chr21	22017887	22018156	ENSG00000233215.5|LINC01687|lncRNA|chr21:22017887:22018156:-	0	-
#Deleted in new
chr21	22041173	22041435	ENSG00000233215.5|LINC01687|lncRNA|chr21:22041173:22041435:-	0	-
#Deleted in new
chr21	22041219	22041435	ENSG00000233215.5|LINC01687|lncRNA|chr21:22041219:22041435:-	0	-
#Deleted in new
chr21	22054309	22054369	ENSG00000233215.5|LINC01687|lncRNA|chr21:22054309:22054369:-	0	-
#Deleted in new
chr21	22096528	22096586	ENSG00000233215.5|LINC01687|lncRNA|chr21:22096528:22096586:-	0	-
#Deleted in new
chr21	22098312	22098459	ENSG00000233215.5|LINC01687|lncRNA|chr21:22098312:22098459:-	0	-
#Deleted in new
chr21	22098616	22098712	ENSG00000184856.6|LINC00308|lncRNA|chr21:22098616:22098712:+	0	+
#Deleted in new
chr21	22109445	22109553	ENSG00000184856.6|LINC00308|lncRNA|chr21:22109445:22109553:+	0	+
#Deleted in new
chr21	22111770	22111826	ENSG00000184856.6|LINC00308|lncRNA|chr21:22111770:22111826:+	0	+
#Deleted in new
chr21	22114759	22114898	ENSG00000184856.6|LINC00308|lncRNA|chr21:22114759:22114898:+	0	+
#Deleted in new
chr21	22114977	22115112	ENSG00000184856.6|LINC00308|lncRNA|chr21:22114977:22115112:+	0	+
#Deleted in new
chr21	22116335	22116528	ENSG00000184856.6|LINC00308|lncRNA|chr21:22116335:22116528:+	0	+
#Deleted in new
chr21	22209938	22210244	ENSG00000226043.1|AP000561.1|lncRNA|chr21:22209938:22210244:+	0	+
#Deleted in new
chr21	22212734	22212813	ENSG00000226043.1|AP000561.1|lncRNA|chr21:22212734:22212813:+	0	+
#Deleted in new
chr21	22420769	22420819	ENSG00000226043.1|AP000561.1|lncRNA|chr21:22420769:22420819:+	0	+
#Deleted in new
chr21	22500603	22501310	ENSG00000234034.1|AP000959.1|lncRNA|chr21:22500603:22501310:-	0	-
#Deleted in new
chr21	22519867	22520058	ENSG00000234034.1|AP000959.1|lncRNA|chr21:22519867:22520058:-	0	-
#Deleted in new
chr2	123065320	123065469	ENSG00000237856.1|AC062020.1|lncRNA|chr2:123065320:123065469:+	0	+
#Deleted in new
chr21	23065490	23065669	ENSG00000230972.1|AP001116.1|lncRNA|chr21:23065490:23065669:+	0	+
#Deleted in new
chr2	123066150	123066206	ENSG00000232740.1|LINC01826|lncRNA|chr2:123066150:123066206:-	0	-
#Deleted in new
chr21	23067918	23068036	ENSG00000230972.1|AP001116.1|lncRNA|chr21:23067918:23068036:+	0	+
#Deleted in new
chr2	123070166	123070364	ENSG00000232740.1|LINC01826|lncRNA|chr2:123070166:123070364:-	0	-
#Deleted in new
chr2	123073151	123073481	ENSG00000232740.1|LINC01826|lncRNA|chr2:123073151:123073481:-	0	-
#Deleted in new
chr2	12308687	12308784	ENSG00000224184.5|MIR3681HG|lncRNA|chr2:12308687:12308784:+	0	+
#Deleted in new
chr21	23108819	23109002	ENSG00000230972.1|AP001116.1|lncRNA|chr21:23108819:23109002:+	0	+
#Deleted in new
chr21	23128640	23128738	ENSG00000230972.1|AP001116.1|lncRNA|chr21:23128640:23128738:+	0	+
#Deleted in new
chr21	23131022	23131206	ENSG00000230972.1|AP001116.1|lncRNA|chr21:23131022:23131206:+	0	+
#Deleted in new
chr21	23364037	23364193	ENSG00000228592.1|D21S2088E|lncRNA|chr21:23364037:23364193:-	0	-
#Deleted in new
chr21	23372326	23372448	ENSG00000228592.1|D21S2088E|lncRNA|chr21:23372326:23372448:-	0	-
#Deleted in new
chr21	23372947	23373084	ENSG00000228592.1|D21S2088E|lncRNA|chr21:23372947:23373084:-	0	-
#Deleted in new
chr21	23384687	23384861	ENSG00000228592.1|D21S2088E|lncRNA|chr21:23384687:23384861:-	0	-
#Deleted in new
chr2	123443265	123443480	ENSG00000226708.1|AC073409.1|lncRNA|chr2:123443265:123443480:-	0	-
#Deleted in new
chr2	123444391	123444445	ENSG00000226708.1|AC073409.1|lncRNA|chr2:123444391:123444445:-	0	-
#Deleted in new
chr21	23477640	23477771	ENSG00000227716.1|AP000459.1|lncRNA|chr21:23477640:23477771:+	0	+
#Deleted in new
chr21	23489994	23490724	ENSG00000227716.1|AP000459.1|lncRNA|chr21:23489994:23490724:+	0	+
#Deleted in new
chr2	123850521	123850695	ENSG00000279874.1|AC064859.1|lncRNA|chr2:123850521:123850695:-	0	-
#Deleted in new
chr21	23888797	23889125	ENSG00000231986.1|AP000474.1|lncRNA|chr21:23888797:23889125:-	0	-
#Deleted in new
chr21	23889509	23889726	ENSG00000231986.1|AP000474.1|lncRNA|chr21:23889509:23889726:-	0	-
#Deleted in new
chr21	23960904	23961588	ENSG00000235564.1|AP000477.2|lncRNA|chr21:23960904:23961588:-	0	-
#Deleted in new
chr21	23967179	23967273	ENSG00000235564.1|AP000477.2|lncRNA|chr21:23967179:23967273:-	0	-
#Deleted in new
chr2	124016857	124016900	ENSG00000228400.1|AC079154.1|lncRNA|chr2:124016857:124016900:-	0	-
#Deleted in new
chr21	24049519	24050286	ENSG00000226996.5|AP000477.1|lncRNA|chr21:24049519:24050286:+	0	+
#Deleted in new
chr21	24155169	24155729	ENSG00000224018.1|AP000470.1|lncRNA|chr21:24155169:24155729:-	0	-
#Deleted in new
chr21	24187270	24187360	ENSG00000224018.1|AP000470.1|lncRNA|chr21:24187270:24187360:-	0	-
#Deleted in new
chr21	24188299	24188342	ENSG00000224018.1|AP000470.1|lncRNA|chr21:24188299:24188342:-	0	-
#Partially deleted in new
chr21	24304549	24306169	ENSG00000224832.1|LINC01689|lncRNA|chr21:24304549:24306169:-	0	-
#Deleted in new
chr21	24307618	24307759	ENSG00000224832.1|LINC01689|lncRNA|chr21:24307618:24307759:-	0	-
#Deleted in new
chr21	24308215	24308333	ENSG00000224832.1|LINC01689|lncRNA|chr21:24308215:24308333:-	0	-
#Deleted in new
chr21	24321249	24321377	ENSG00000224832.1|LINC01689|lncRNA|chr21:24321249:24321377:-	0	-
#Deleted in new
chr21	24438252	24438433	ENSG00000237484.5|LINC01684|lncRNA|chr21:24438252:24438433:+	0	+
#Deleted in new
chr21	24438252	24438443	ENSG00000237484.5|LINC01684|lncRNA|chr21:24438252:24438443:+	0	+
#Deleted in new
chr21	24441168	24441324	ENSG00000237484.5|LINC01684|lncRNA|chr21:24441168:24441324:+	0	+
#Deleted in new
chr21	24441168	24441353	ENSG00000237484.5|LINC01684|lncRNA|chr21:24441168:24441353:+	0	+
#Deleted in new
chr21	24441794	24441913	ENSG00000237484.5|LINC01684|lncRNA|chr21:24441794:24441913:+	0	+
#Deleted in new
chr21	24485622	24485685	ENSG00000237484.5|LINC01684|lncRNA|chr21:24485622:24485685:+	0	+
#Deleted in new
chr21	24488112	24490307	ENSG00000237484.5|LINC01684|lncRNA|chr21:24488112:24490307:+	0	+
#Deleted in new
chr21	24530663	24530767	ENSG00000237484.5|LINC01684|lncRNA|chr21:24530663:24530767:+	0	+
#Deleted in new
chr21	24545994	24547942	ENSG00000237484.5|LINC01684|lncRNA|chr21:24545994:24547942:+	0	+
#Deleted in new
chr21	24840549	24840728	ENSG00000226983.2|LINC01692|lncRNA|chr21:24840549:24840728:+	0	+
#Deleted in new
chr21	24844778	24844929	ENSG00000226983.2|LINC01692|lncRNA|chr21:24844778:24844929:+	0	+
#Deleted in new
chr21	24938430	24938624	ENSG00000230379.5|AP000146.1|lncRNA|chr21:24938430:24938624:-	0	-
#Deleted in new
chr21	24943922	24943980	ENSG00000230379.5|AP000146.1|lncRNA|chr21:24943922:24943980:-	0	-
#Deleted in new
chr21	24951910	24952157	ENSG00000230379.5|AP000146.1|lncRNA|chr21:24951910:24952157:-	0	-
#Deleted in new
chr21	24992702	24992817	ENSG00000230379.5|AP000146.1|lncRNA|chr21:24992702:24992817:-	0	-
#Deleted in new
chr21	25029783	25029859	ENSG00000226983.2|LINC01692|lncRNA|chr21:25029783:25029859:+	0	+
#Deleted in new
chr21	25055433	25057746	ENSG00000226983.2|LINC01692|lncRNA|chr21:25055433:25057746:+	0	+
#Deleted in new
chr21	25055534	25055584	ENSG00000244278.1|AP000235.1|lncRNA|chr21:25055534:25055584:+	0	+
#Deleted in new
chr21	25061625	25061711	ENSG00000244278.1|AP000235.1|lncRNA|chr21:25061625:25061711:+	0	+
#Deleted in new
chr21	25069715	25069906	ENSG00000244278.1|AP000235.1|lncRNA|chr21:25069715:25069906:+	0	+
#Deleted in new
chr21	25095021	25095153	ENSG00000232512.6|AP000233.2|lncRNA|chr21:25095021:25095153:+	0	+
#Deleted in new
chr21	25095041	25095153	ENSG00000232512.6|AP000233.2|lncRNA|chr21:25095041:25095153:+	0	+
#Partially deleted in new
chr21	25101131	25101320	ENSG00000232512.6|AP000233.2|lncRNA|chr21:25101131:25101320:+	0	+
#Deleted in new
chr21	25127468	25127517	ENSG00000223870.1|AP000233.1|lncRNA|chr21:25127468:25127517:+	0	+
#Deleted in new
chr21	25169430	25169749	ENSG00000222042.1|AP001341.1|lncRNA|chr21:25169430:25169749:-	0	-
#Deleted in new
chr21	25170756	25170906	ENSG00000222042.1|AP001341.1|lncRNA|chr21:25170756:25170906:-	0	-
#Partially deleted in new
chr21	25396486	25396684	ENSG00000185433.8|LINC00158|lncRNA|chr21:25396486:25396684:-	0	-
#Deleted in new
chr21	25420707	25420800	ENSG00000185433.8|LINC00158|lncRNA|chr21:25420707:25420800:-	0	-
#Deleted in new
chr21	25429765	25430009	ENSG00000185433.8|LINC00158|lncRNA|chr21:25429765:25430009:-	0	-
#Partially deleted in new
chr21	25515472	25516455	ENSG00000229962.1|AP000221.1|lncRNA|chr21:25515472:25516455:-	0	-
#Deleted in new
chr21	25518275	25518338	ENSG00000229962.1|AP000221.1|lncRNA|chr21:25518275:25518338:-	0	-
#Deleted in new
chr2	12558205	12558444	ENSG00000224184.5|MIR3681HG|lncRNA|chr2:12558205:12558444:+	0	+
#Deleted in new
chr21	25582769	25583326	ENSG00000260583.1|AP000223.1|lncRNA|chr21:25582769:25583326:-	0	-
#Deleted in new
chr21	25587700	25587789	ENSG00000154719.13|MRPL39|pc|chr21:25587700:25587789:-	0	-
#Deleted in new
chr2	12561099	12561265	ENSG00000224184.5|MIR3681HG|lncRNA|chr2:12561099:12561265:+	0	+
#Partially deleted in new
chr2	1256404	1256604	ENSG00000172554.11|SNTG2|pc|chr2:1256404:1256604:+	0	+
#Partially deleted in new
chr21	25709433	25710179	ENSG00000154721.14|JAM2|pc|chr21:25709433:25710179:+	0	+
#Deleted in new
chr2	125710968	125711370	ENSG00000235491.1|LINC01889|lncRNA|chr2:125710968:125711370:+	0	+
#Partially deleted in new
chr21	25714230	25714573	ENSG00000154721.14|JAM2|pc|chr21:25714230:25714573:+	0	+
#Deleted in new
chr21	25928753	25928997	ENSG00000233783.7|AP001442.1|lncRNA|chr21:25928753:25928997:+	0	+
#Partially deleted in new
chr21	25933815	25934366	ENSG00000233783.7|AP001442.1|lncRNA|chr21:25933815:25934366:+	0	+
#Deleted in new
chr21	25934086	25934366	ENSG00000233783.7|AP001442.1|lncRNA|chr21:25934086:25934366:+	0	+
#Deleted in new
chr21	25934088	25934189	ENSG00000233783.7|AP001442.1|lncRNA|chr21:25934088:25934189:+	0	+
#Deleted in new
chr21	25934305	25934366	ENSG00000233783.7|AP001442.1|lncRNA|chr21:25934305:25934366:+	0	+
#Deleted in new
chr21	25934311	25934366	ENSG00000233783.7|AP001442.1|lncRNA|chr21:25934311:25934366:+	0	+
#Partially deleted in new
chr21	25934340	25935178	ENSG00000233783.7|AP001442.1|lncRNA|chr21:25934340:25935178:+	0	+
#Deleted in new
chr21	25937789	25937912	ENSG00000233783.7|AP001442.1|lncRNA|chr21:25937789:25937912:+	0	+
#Deleted in new
chr21	25941307	25941641	ENSG00000233783.7|AP001442.1|lncRNA|chr21:25941307:25941641:+	0	+
#Partially deleted in new
chr21	25941307	25941803	ENSG00000233783.7|AP001442.1|lncRNA|chr21:25941307:25941803:+	0	+
#Deleted in new
chr21	25945523	25945975	ENSG00000142192.20|APP|pc|chr21:25945523:25945975:-	0	-
#Deleted in new
chr21	26009595	26009913	ENSG00000142192.20|APP|pc|chr21:26009595:26009913:-	0	-
#Deleted in new
chr2	12605092	12605145	ENSG00000223360.1|AC096559.1|lncRNA|chr2:12605092:12605145:+	0	+
#Deleted in new
chr2	126110098	126110310	ENSG00000226813.2|LINC01941|lncRNA|chr2:126110098:126110310:-	0	-
#Deleted in new
chr2	126112932	126113170	ENSG00000226813.2|LINC01941|lncRNA|chr2:126112932:126113170:-	0	-
#Deleted in new
chr2	126114016	126114127	ENSG00000226813.2|LINC01941|lncRNA|chr2:126114016:126114127:-	0	-
#Deleted in new
chr2	126117922	126117985	ENSG00000226813.2|LINC01941|lncRNA|chr2:126117922:126117985:-	0	-
#Deleted in new
chr21	26175609	26175824	ENSG00000224541.1|AP001439.1|lncRNA|chr21:26175609:26175824:+	0	+
#Deleted in new
chr21	26180536	26180601	ENSG00000273492.5|AP000229.1|lncRNA|chr21:26180536:26180601:+	0	+
#Deleted in new
chr21	26214744	26214861	ENSG00000273492.5|AP000229.1|lncRNA|chr21:26214744:26214861:+	0	+
#Deleted in new
chr21	26215701	26215941	ENSG00000273492.5|AP000229.1|lncRNA|chr21:26215701:26215941:+	0	+
#Partially deleted in new
chr21	26215701	26217381	ENSG00000273492.5|AP000229.1|lncRNA|chr21:26215701:26217381:+	0	+
#Deleted in new
chr2	1262843	1262949	ENSG00000172554.11|SNTG2|pc|chr2:1262843:1262949:+	0	+
#Deleted in new
chr2	126308509	126308645	ENSG00000235774.1|AC023347.1|lncRNA|chr2:126308509:126308645:+	0	+
#Deleted in new
chr2	126312300	126312537	ENSG00000235774.1|AC023347.1|lncRNA|chr2:126312300:126312537:+	0	+
#Deleted in new
chr2	126312413	126312537	ENSG00000235774.1|AC023347.1|lncRNA|chr2:126312413:126312537:+	0	+
#Deleted in new
chr2	126328816	126329132	ENSG00000235774.1|AC023347.1|lncRNA|chr2:126328816:126329132:+	0	+
#Deleted in new
chr2	126343761	126343992	ENSG00000235774.1|AC023347.1|lncRNA|chr2:126343761:126343992:+	0	+
#Deleted in new
chr21	26382524	26382596	ENSG00000232692.1|AP001596.1|lncRNA|chr21:26382524:26382596:+	0	+
#Deleted in new
chr21	26387000	26387058	ENSG00000232692.1|AP001596.1|lncRNA|chr21:26387000:26387058:+	0	+
#Deleted in new
chr21	26417942	26418087	ENSG00000232692.1|AP001596.1|lncRNA|chr21:26417942:26418087:+	0	+
#Deleted in new
chr21	26459902	26460214	ENSG00000273115.1|AP001596.2|lncRNA|chr21:26459902:26460214:-	0	-
#Deleted in new
chr21	26470559	26470646	ENSG00000232692.1|AP001596.1|lncRNA|chr21:26470559:26470646:+	0	+
#Deleted in new
chr21	26477970	26478135	ENSG00000166265.11|CYYR1|pc|chr21:26477970:26478135:-	0	-
#Deleted in new
chr21	26518521	26518593	ENSG00000197934.8|CYYR1-AS1|lncRNA|chr21:26518521:26518593:+	0	+
#Deleted in new
chr21	26550318	26552127	ENSG00000197934.8|CYYR1-AS1|lncRNA|chr21:26550318:26552127:+	0	+
#Partially deleted in new
chr21	26567956	26569252	ENSG00000197934.8|CYYR1-AS1|lncRNA|chr21:26567956:26569252:+	0	+
#Deleted in new
chr2	126678300	126678887	ENSG00000136732.14|GYPC|pc|chr2:126678300:126678887:+	0	+
#Deleted in new
chr2	126685827	126686645	ENSG00000136732.14|GYPC|pc|chr2:126685827:126686645:+	0	+
#Deleted in new
chr2	126690254	126690311	ENSG00000136732.14|GYPC|pc|chr2:126690254:126690311:+	0	+
#Deleted in new
chr2	127024251	127025723	ENSG00000260634.1|AC012508.2|lncRNA|chr2:127024251:127025723:-	0	-
#Deleted in new
chr2	127025210	127029686	ENSG00000260163.1|AC012508.1|lncRNA|chr2:127025210:127029686:+	0	+
#Deleted in new
chr2	127184119	127187387	ENSG00000186684.12|CYP27C1|pc|chr2:127184119:127187387:-	0	-
#Deleted in new
chr2	127186409	127187387	ENSG00000186684.12|CYP27C1|pc|chr2:127186409:127187387:-	0	-
#Deleted in new
chr2	127193788	127193867	ENSG00000186684.12|CYP27C1|pc|chr2:127193788:127193867:-	0	-
#Deleted in new
chr2	127195334	127195501	ENSG00000186684.12|CYP27C1|pc|chr2:127195334:127195501:-	0	-
#Deleted in new
chr2	127199375	127199539	ENSG00000186684.12|CYP27C1|pc|chr2:127199375:127199539:-	0	-
#Deleted in new
chr2	127201121	127201331	ENSG00000186684.12|CYP27C1|pc|chr2:127201121:127201331:-	0	-
#Deleted in new
chr2	127203371	127203571	ENSG00000186684.12|CYP27C1|pc|chr2:127203371:127203571:-	0	-
#Deleted in new
chr2	127205658	127205767	ENSG00000186684.12|CYP27C1|pc|chr2:127205658:127205767:-	0	-
#Deleted in new
chr2	127219988	127220078	ENSG00000186684.12|CYP27C1|pc|chr2:127219988:127220078:-	0	-
#Partially deleted in new
chr2	127259295	127262882	ENSG00000163161.12|ERCC3|pc|chr2:127259295:127262882:-	0	-
#Deleted in new
chr21	27362712	27362813	ENSG00000236332.1|AP001604.1|lncRNA|chr21:27362712:27362813:+	0	+
#Deleted in new
chr2	127387451	127387932	ENSG00000169967.16|MAP3K2|pc|chr2:127387451:127387932:-	0	-
#Deleted in new
chr21	27387466	27387660	ENSG00000236332.1|AP001604.1|lncRNA|chr21:27387466:27387660:+	0	+
#Deleted in new
chr2	127388247	127388465	ENSG00000169967.16|MAP3K2|pc|chr2:127388247:127388465:-	0	-
#Deleted in new
chr2	127389129	127389185	ENSG00000236682.1|AC068282.1|lncRNA|chr2:127389129:127389185:+	0	+
#Deleted in new
chr21	27391389	27391551	ENSG00000236332.1|AP001604.1|lncRNA|chr21:27391389:27391551:+	0	+
#Deleted in new
chr21	27395580	27395787	ENSG00000236332.1|AP001604.1|lncRNA|chr21:27395580:27395787:+	0	+
#Partially deleted in new
chr2	127397946	127400580	ENSG00000236682.1|AC068282.1|lncRNA|chr2:127397946:127400580:+	0	+
#Deleted in new
chr21	27398479	27398565	ENSG00000231236.2|AP001605.1|lncRNA|chr21:27398479:27398565:-	0	-
#Deleted in new
chr21	27399531	27399574	ENSG00000231236.2|AP001605.1|lncRNA|chr21:27399531:27399574:-	0	-
#Deleted in new
chr2	127436206	127436297	ENSG00000163166.14|IWS1|pc|chr2:127436206:127436297:-	0	-
#Deleted in new
chr2	127455393	127455770	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127455393:127455770:+	0	+
#Deleted in new
chr2	127455417	127455553	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127455417:127455553:+	0	+
#Deleted in new
chr2	127455451	127455889	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127455451:127455889:+	0	+
#Deleted in new
chr2	127455507	127456365	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127455507:127456365:+	0	+
#Deleted in new
chr2	127455648	127455889	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127455648:127455889:+	0	+
#Deleted in new
chr2	127456165	127456365	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127456165:127456365:+	0	+
#Deleted in new
chr2	127463641	127463884	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127463641:127463884:+	0	+
#Deleted in new
chr2	127463644	127463884	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127463644:127463884:+	0	+
#Deleted in new
chr2	127463651	127463884	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127463651:127463884:+	0	+
#Deleted in new
chr2	127463672	127463884	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127463672:127463884:+	0	+
#Deleted in new
chr2	127463731	127463884	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127463731:127463884:+	0	+
#Deleted in new
chr2	127463849	127463884	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127463849:127463884:+	0	+
#Deleted in new
chr2	127464840	127465030	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127464840:127465030:+	0	+
#Deleted in new
chr2	127467576	127467848	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127467576:127467848:+	0	+
#Deleted in new
chr2	127467584	127467848	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127467584:127467848:+	0	+
#Deleted in new
chr2	127467672	127467848	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127467672:127467848:+	0	+
#Deleted in new
chr2	127467707	127467848	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127467707:127467848:+	0	+
#Deleted in new
chr2	127467725	127467848	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127467725:127467848:+	0	+
#Deleted in new
chr2	127467824	127467848	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127467824:127467848:+	0	+
#Deleted in new
chr2	127467827	127467848	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127467827:127467848:+	0	+
#Deleted in new
chr2	127467828	127467848	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127467828:127467848:+	0	+
#Deleted in new
chr2	127467829	127467848	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127467829:127467848:+	0	+
#Deleted in new
chr2	127467832	127467848	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127467832:127467848:+	0	+
#Deleted in new
chr2	127468013	127468126	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127468013:127468126:+	0	+
#Deleted in new
chr2	127469985	127470134	ENSG00000163166.14|IWS1|pc|chr2:127469985:127470134:-	0	-
#Deleted in new
chr2	127470250	127470385	ENSG00000163166.14|IWS1|pc|chr2:127470250:127470385:-	0	-
#Deleted in new
chr2	127470354	127470455	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127470354:127470455:+	0	+
#Deleted in new
chr2	127470354	127470851	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127470354:127470851:+	0	+
#Deleted in new
chr2	127472989	127473170	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127472989:127473170:+	0	+
#Deleted in new
chr2	127482253	127482975	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127482253:127482975:+	0	+
#Deleted in new
chr2	127482827	127482975	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127482827:127482975:+	0	+
#Deleted in new
chr2	127482880	127482975	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127482880:127482975:+	0	+
#Deleted in new
chr2	127484472	127484691	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127484472:127484691:+	0	+
#Partially deleted in new
chr2	127487984	127488146	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127487984:127488146:+	0	+
#Deleted in new
chr2	127490815	127490919	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127490815:127490919:+	0	+
#Deleted in new
chr2	127498707	127498830	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127498707:127498830:+	0	+
#Deleted in new
chr2	127498731	127498830	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127498731:127498830:+	0	+
#Deleted in new
chr2	127501744	127501805	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127501744:127501805:+	0	+
#Deleted in new
chr2	127506691	127506719	ENSG00000163166.14|IWS1|pc|chr2:127506691:127506719:-	0	-
#Deleted in new
chr2	127511170	127511418	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127511170:127511418:+	0	+
#Deleted in new
chr2	127514313	127514623	ENSG00000231731.7|AC010976.1|lncRNA|chr2:127514313:127514623:+	0	+
#Deleted in new
chr2	127514816	127514937	ENSG00000163166.14|IWS1|pc|chr2:127514816:127514937:-	0	-
#Deleted in new
chr21	27638692	27638923	ENSG00000234052.1|LINC01673|lncRNA|chr21:27638692:27638923:+	0	+
#Deleted in new
chr2	127646372	127646678	ENSG00000072163.19|LIMS2|pc|chr2:127646372:127646678:-	0	-
#Deleted in new
chr2	127648036	127648253	ENSG00000072163.19|LIMS2|pc|chr2:127648036:127648253:-	0	-
#Deleted in new
chr2	127648057	127648286	ENSG00000144230.16|GPR17|pc|chr2:127648057:127648286:+	0	+
#Deleted in new
chr2	127648116	127648286	ENSG00000144230.16|GPR17|pc|chr2:127648116:127648286:+	0	+
#Deleted in new
chr21	27653355	27653491	ENSG00000234052.1|LINC01673|lncRNA|chr21:27653355:27653491:+	0	+
#Deleted in new
chr21	27722378	27722413	ENSG00000225298.5|LINC00113|lncRNA|chr21:27722378:27722413:+	0	+
#Deleted in new
chr21	27722397	27722413	ENSG00000225298.5|LINC00113|lncRNA|chr21:27722397:27722413:+	0	+
#Deleted in new
chr21	27724798	27724881	ENSG00000225298.5|LINC00113|lncRNA|chr21:27724798:27724881:+	0	+
#Deleted in new
chr21	27743392	27743504	ENSG00000225298.5|LINC00113|lncRNA|chr21:27743392:27743504:+	0	+
#Deleted in new
chr21	27745817	27746032	ENSG00000225298.5|LINC00113|lncRNA|chr21:27745817:27746032:+	0	+
#Deleted in new
chr21	27745817	27746036	ENSG00000225298.5|LINC00113|lncRNA|chr21:27745817:27746036:+	0	+
#Deleted in new
chr21	27751071	27751233	ENSG00000225298.5|LINC00113|lncRNA|chr21:27751071:27751233:+	0	+
#Split in new
chr2	127843550	127848185	ENSG00000144231.10|POLR2D|pc|chr2:127843550:127848185:-	0	-
#Partially deleted in new
chr2	127857765	127857949	ENSG00000144231.10|POLR2D|pc|chr2:127857765:127857949:-	0	-
#Deleted in new
chr21	27954921	27955023	ENSG00000234083.1|AJ006995.1|lncRNA|chr21:27954921:27955023:+	0	+
#Deleted in new
chr21	27977908	27978122	ENSG00000234083.1|AJ006995.1|lncRNA|chr21:27977908:27978122:+	0	+
#Deleted in new
chr21	28022696	28023233	ENSG00000178457.3|LINC00314|lncRNA|chr21:28022696:28023233:+	0	+
#Deleted in new
chr21	28048403	28048537	ENSG00000232079.6|LINC01697|lncRNA|chr21:28048403:28048537:+	0	+
#Deleted in new
chr21	28048446	28048537	ENSG00000232079.6|LINC01697|lncRNA|chr21:28048446:28048537:+	0	+
#Deleted in new
chr21	28087141	28087287	ENSG00000232079.6|LINC01697|lncRNA|chr21:28087141:28087287:+	0	+
#Deleted in new
chr21	28089888	28090521	ENSG00000232079.6|LINC01697|lncRNA|chr21:28089888:28090521:+	0	+
#Deleted in new
chr21	28090355	28090521	ENSG00000232079.6|LINC01697|lncRNA|chr21:28090355:28090521:+	0	+
#Deleted in new
chr21	28090444	28090521	ENSG00000232079.6|LINC01697|lncRNA|chr21:28090444:28090521:+	0	+
#Deleted in new
chr21	28101265	28101319	ENSG00000232079.6|LINC01697|lncRNA|chr21:28101265:28101319:+	0	+
#Deleted in new
chr21	28102549	28102639	ENSG00000232079.6|LINC01697|lncRNA|chr21:28102549:28102639:+	0	+
#Deleted in new
chr21	28102549	28102769	ENSG00000232079.6|LINC01697|lncRNA|chr21:28102549:28102769:+	0	+
#Deleted in new
chr21	28102549	28102790	ENSG00000232079.6|LINC01697|lncRNA|chr21:28102549:28102790:+	0	+
#Deleted in new
chr21	28102549	28102963	ENSG00000232079.6|LINC01697|lncRNA|chr21:28102549:28102963:+	0	+
#Deleted in new
chr21	28102549	28103240	ENSG00000232079.6|LINC01697|lncRNA|chr21:28102549:28103240:+	0	+
#Deleted in new
chr21	28102549	28103580	ENSG00000232079.6|LINC01697|lncRNA|chr21:28102549:28103580:+	0	+
#Deleted in new
chr21	28116093	28119874	ENSG00000236532.5|LINC01695|lncRNA|chr21:28116093:28119874:-	0	-
#Deleted in new
chr21	28130118	28130622	ENSG00000232079.6|LINC01697|lncRNA|chr21:28130118:28130622:+	0	+
#Deleted in new
chr21	28130529	28130622	ENSG00000232079.6|LINC01697|lncRNA|chr21:28130529:28130622:+	0	+
#Deleted in new
chr21	28135313	28135572	ENSG00000232079.6|LINC01697|lncRNA|chr21:28135313:28135572:+	0	+
#Deleted in new
chr21	28135313	28135708	ENSG00000232079.6|LINC01697|lncRNA|chr21:28135313:28135708:+	0	+
#Deleted in new
chr21	28136689	28137611	ENSG00000232079.6|LINC01697|lncRNA|chr21:28136689:28137611:+	0	+
#Deleted in new
chr21	28163601	28163717	ENSG00000236532.5|LINC01695|lncRNA|chr21:28163601:28163717:-	0	-
#Deleted in new
chr21	28167225	28167319	ENSG00000236532.5|LINC01695|lncRNA|chr21:28167225:28167319:-	0	-
#Deleted in new
chr21	28170077	28170143	ENSG00000236532.5|LINC01695|lncRNA|chr21:28170077:28170143:-	0	-
#Partially deleted in new
chr2	128187236	128187319	ENSG00000136731.12|UGGT1|pc|chr2:128187236:128187319:+	0	+
#Deleted in new
chr21	28217177	28217347	ENSG00000236532.5|LINC01695|lncRNA|chr21:28217177:28217347:-	0	-
#Deleted in new
chr21	28225883	28225991	ENSG00000236532.5|LINC01695|lncRNA|chr21:28225883:28225991:-	0	-
#Deleted in new
chr21	28228361	28228480	ENSG00000236532.5|LINC01695|lncRNA|chr21:28228361:28228480:-	0	-
#Deleted in new
chr21	28228361	28228667	ENSG00000236532.5|LINC01695|lncRNA|chr21:28228361:28228667:-	0	-
#Deleted in new
chr2	128246456	128246525	ENSG00000136720.6|HS6ST1|pc|chr2:128246456:128246525:-	0	-
#Deleted in new
chr21	28446289	28446472	ENSG00000232855.6|AF165147.1|lncRNA|chr21:28446289:28446472:-	0	-
#Deleted in new
chr21	28482956	28483069	ENSG00000232855.6|AF165147.1|lncRNA|chr21:28482956:28483069:-	0	-
#Deleted in new
chr21	28540052	28540355	ENSG00000226935.6|LINC00161|lncRNA|chr21:28540052:28540355:+	0	+
#Deleted in new
chr2	128580490	128580649	ENSG00000237532.1|AC012451.1|lncRNA|chr2:128580490:128580649:-	0	-
#Deleted in new
chr2	128581378	128581576	ENSG00000237532.1|AC012451.1|lncRNA|chr2:128581378:128581576:-	0	-
#Deleted in new
chr21	28626584	28626604	ENSG00000232855.6|AF165147.1|lncRNA|chr21:28626584:28626604:-	0	-
#Deleted in new
chr21	28626584	28626676	ENSG00000232855.6|AF165147.1|lncRNA|chr21:28626584:28626676:-	0	-
#Deleted in new
chr21	28674646	28674773	ENSG00000232855.6|AF165147.1|lncRNA|chr21:28674646:28674773:-	0	-
#Deleted in new
chr21	28674646	28674848	ENSG00000232855.6|AF165147.1|lncRNA|chr21:28674646:28674848:-	0	-
#Deleted in new
chr21	28872190	28872739	ENSG00000156239.11|N6AMT1|pc|chr21:28872190:28872739:-	0	-
#Partially deleted in new
chr21	28872190	28876491	ENSG00000156239.11|N6AMT1|pc|chr21:28872190:28876491:-	0	-
#Deleted in new
chr21	28964576	28964766	ENSG00000198862.13|LTN1|pc|chr21:28964576:28964766:-	0	-
#Deleted in new
chr21	28967601	28967973	ENSG00000198862.13|LTN1|pc|chr21:28967601:28967973:-	0	-
#Deleted in new
chr21	29009594	29009692	ENSG00000156253.6|RWDD2B|pc|chr21:29009594:29009692:-	0	-
#Deleted in new
chr21	29009626	29009692	ENSG00000156253.6|RWDD2B|pc|chr21:29009626:29009692:-	0	-
#Deleted in new
chr21	29026566	29026661	ENSG00000156256.14|USP16|pc|chr21:29026566:29026661:+	0	+
#Partially deleted in new
chr21	29052122	29053958	ENSG00000156256.14|USP16|pc|chr21:29052122:29053958:+	0	+
#Deleted in new
chr21	29055804	29056019	ENSG00000156261.12|CCT8|pc|chr21:29055804:29056019:-	0	-
#Deleted in new
chr21	29058072	29058192	ENSG00000231125.2|AF129075.1|lncRNA|chr21:29058072:29058192:-	0	-
#Deleted in new
chr21	29059421	29060095	ENSG00000231125.2|AF129075.1|lncRNA|chr21:29059421:29060095:-	0	-
#Deleted in new
chr2	129063845	129064429	ENSG00000238277.1|AC068483.1|lncRNA|chr2:129063845:129064429:-	0	-
#Deleted in new
chr2	129071649	129071725	ENSG00000238277.1|AC068483.1|lncRNA|chr2:129071649:129071725:-	0	-
#Deleted in new
chr21	29071951	29071988	ENSG00000156261.12|CCT8|pc|chr21:29071951:29071988:-	0	-
#Deleted in new
chr21	29071951	29072236	ENSG00000156261.12|CCT8|pc|chr21:29071951:29072236:-	0	-
#Deleted in new
chr21	29077470	29077713	ENSG00000156265.15|MAP3K7CL|pc|chr21:29077470:29077713:+	0	+
#Deleted in new
chr21	29077474	29077713	ENSG00000156265.15|MAP3K7CL|pc|chr21:29077474:29077713:+	0	+
#Deleted in new
chr21	29077495	29077713	ENSG00000156265.15|MAP3K7CL|pc|chr21:29077495:29077713:+	0	+
#Deleted in new
chr21	29077632	29077713	ENSG00000156265.15|MAP3K7CL|pc|chr21:29077632:29077713:+	0	+
#Deleted in new
chr21	29080551	29080708	ENSG00000156265.15|MAP3K7CL|pc|chr21:29080551:29080708:+	0	+
#Deleted in new
chr21	29102507	29102640	ENSG00000156265.15|MAP3K7CL|pc|chr21:29102507:29102640:+	0	+
#Deleted in new
chr21	29109039	29109183	ENSG00000156265.15|MAP3K7CL|pc|chr21:29109039:29109183:+	0	+
#Deleted in new
chr21	29109039	29109791	ENSG00000156265.15|MAP3K7CL|pc|chr21:29109039:29109791:+	0	+
#Deleted in new
chr21	29109131	29109183	ENSG00000156265.15|MAP3K7CL|pc|chr21:29109131:29109183:+	0	+
#Deleted in new
chr21	29122054	29122213	ENSG00000156265.15|MAP3K7CL|pc|chr21:29122054:29122213:+	0	+
#Deleted in new
chr21	29193479	29193710	ENSG00000215533.8|LINC00189|lncRNA|chr21:29193479:29193710:+	0	+
#Deleted in new
chr21	29193493	29194260	ENSG00000215533.8|LINC00189|lncRNA|chr21:29193493:29194260:+	0	+
#Deleted in new
chr21	29193930	29194260	ENSG00000215533.8|LINC00189|lncRNA|chr21:29193930:29194260:+	0	+
#Deleted in new
chr21	29194036	29194260	ENSG00000215533.8|LINC00189|lncRNA|chr21:29194036:29194260:+	0	+
#Deleted in new
chr21	29194070	29194260	ENSG00000156273.15|BACH1|pc|chr21:29194070:29194260:+	0	+
#Deleted in new
chr21	29194146	29194260	ENSG00000156273.15|BACH1|pc|chr21:29194146:29194260:+	0	+
#Deleted in new
chr21	29218860	29218926	ENSG00000156273.15|BACH1|pc|chr21:29218860:29218926:+	0	+
#Deleted in new
chr21	29228960	29229026	ENSG00000215533.8|LINC00189|lncRNA|chr21:29228960:29229026:+	0	+
#Deleted in new
chr2	129242172	129243650	ENSG00000204460.3|LINC01854|lncRNA|chr2:129242172:129243650:-	0	-
#Deleted in new
chr2	129244142	129244349	ENSG00000204460.3|LINC01854|lncRNA|chr2:129244142:129244349:-	0	-
#Deleted in new
chr2	129245152	129245229	ENSG00000204460.3|LINC01854|lncRNA|chr2:129245152:129245229:-	0	-
#Partially deleted in new
chr2	129249865	129250074	ENSG00000204460.3|LINC01854|lncRNA|chr2:129249865:129250074:-	0	-
#Deleted in new
chr21	29270356	29270456	ENSG00000156273.15|BACH1|pc|chr21:29270356:29270456:+	0	+
#Deleted in new
chr2	129273606	129273848	ENSG00000204460.3|LINC01854|lncRNA|chr2:129273606:129273848:-	0	-
#Deleted in new
chr21	29352578	29352663	ENSG00000248476.1|BACH1-IT1|lncRNA|chr21:29352578:29352663:+	0	+
#Deleted in new
chr21	29359001	29359453	ENSG00000273017.1|AP000240.1|lncRNA|chr21:29359001:29359453:+	0	+
#Deleted in new
chr21	29370018	29370120	ENSG00000232118.2|BACH1-AS1|lncRNA|chr21:29370018:29370120:-	0	-
#Deleted in new
chr21	29370058	29370216	ENSG00000232118.2|BACH1-AS1|lncRNA|chr21:29370058:29370216:-	0	-
#Deleted in new
chr21	29373241	29373302	ENSG00000228817.4|BACH1-IT2|lncRNA|chr21:29373241:29373302:+	0	+
#Deleted in new
chr21	29373241	29373709	ENSG00000228817.4|BACH1-IT2|lncRNA|chr21:29373241:29373709:+	0	+
#Deleted in new
chr21	29630538	29630747	ENSG00000156273.15|BACH1|pc|chr21:29630538:29630747:+	0	+
#Deleted in new
chr21	29630538	29630751	ENSG00000156273.15|BACH1|pc|chr21:29630538:29630751:+	0	+
#Deleted in new
chr21	29758830	29759010	ENSG00000174680.9|GRIK1-AS1|lncRNA|chr21:29758830:29759010:+	0	+
#Deleted in new
chr21	29758830	29759014	ENSG00000174680.9|GRIK1-AS1|lncRNA|chr21:29758830:29759014:+	0	+
#Deleted in new
chr21	29761256	29761419	ENSG00000174680.9|GRIK1-AS1|lncRNA|chr21:29761256:29761419:+	0	+
#Deleted in new
chr2	129825125	129826109	ENSG00000229536.2|AC079776.2|lncRNA|chr2:129825125:129826109:-	0	-
#Deleted in new
chr2	129832274	129832397	ENSG00000229536.2|AC079776.2|lncRNA|chr2:129832274:129832397:-	0	-
#Deleted in new
chr2	129862269	129862461	ENSG00000229536.2|AC079776.2|lncRNA|chr2:129862269:129862461:-	0	-
#Deleted in new
chr2	129869192	129869535	ENSG00000229536.2|AC079776.2|lncRNA|chr2:129869192:129869535:-	0	-
#Deleted in new
chr2	129872605	129872751	ENSG00000229536.2|AC079776.2|lncRNA|chr2:129872605:129872751:-	0	-
#Deleted in new
chr2	129877333	129877404	ENSG00000229536.2|AC079776.2|lncRNA|chr2:129877333:129877404:-	0	-
#Deleted in new
chr2	129877333	129877553	ENSG00000229536.2|AC079776.2|lncRNA|chr2:129877333:129877553:-	0	-
#Deleted in new
chr2	129944651	129946703	ENSG00000237574.1|LINC01856|lncRNA|chr2:129944651:129946703:+	0	+
#Partially deleted in new
chr2	13003780	13003951	ENSG00000225649.5|AC064875.1|lncRNA|chr2:13003780:13003951:-	0	-
#Deleted in new
chr2	13003823	13003951	ENSG00000225649.5|AC064875.1|lncRNA|chr2:13003823:13003951:-	0	-
#Deleted in new
chr2	130086342	130086387	ENSG00000196604.12|POTEF|pc|chr2:130086342:130086387:-	0	-
#Deleted in new
chr21	30089716	30089991	ENSG00000259981.1|AF096876.1|lncRNA|chr21:30089716:30089991:+	0	+
#Deleted in new
chr2	130093437	130093508	ENSG00000196604.12|POTEF|pc|chr2:130093437:130093508:-	0	-
#Deleted in new
chr2	130099469	130099636	ENSG00000196604.12|POTEF|pc|chr2:130099469:130099636:-	0	-
#Deleted in new
chr2	130106460	130106568	ENSG00000196604.12|POTEF|pc|chr2:130106460:130106568:-	0	-
#Deleted in new
chr2	130107683	130107806	ENSG00000224087.1|AC018865.1|lncRNA|chr2:130107683:130107806:+	0	+
#Partially deleted in new
chr2	130119994	130120867	ENSG00000196604.12|POTEF|pc|chr2:130119994:130120867:-	0	-
#Deleted in new
chr2	130127708	130127864	ENSG00000196604.12|POTEF|pc|chr2:130127708:130127864:-	0	-
#Deleted in new
chr2	130129071	130129222	ENSG00000196604.12|POTEF|pc|chr2:130129071:130129222:-	0	-
#Deleted in new
chr2	130144371	130144474	ENSG00000152076.18|CCDC74B|pc|chr2:130144371:130144474:-	0	-
#Deleted in new
chr2	130159512	130159634	ENSG00000136699.19|SMPD4|pc|chr2:130159512:130159634:-	0	-
#Deleted in new
chr2	130188124	130188262	ENSG00000152082.13|MZT2B|pc|chr2:130188124:130188262:+	0	+
#Deleted in new
chr2	130339559	130339762	ENSG00000136710.9|CCDC115|pc|chr2:130339559:130339762:-	0	-
#Partially deleted in new
chr2	130346355	130347810	ENSG00000136718.9|IMP4|pc|chr2:130346355:130347810:+	0	+
#Deleted in new
chr2	130362155	130362430	ENSG00000072135.12|PTPN18|pc|chr2:130362155:130362430:+	0	+
#Partially deleted in new
chr2	130373156	130374533	ENSG00000072135.12|PTPN18|pc|chr2:130373156:130374533:+	0	+
#Partially deleted in new
chr2	130373156	130374571	ENSG00000072135.12|PTPN18|pc|chr2:130373156:130374571:+	0	+
#Partially deleted in new
chr2	130373156	130375409	ENSG00000072135.12|PTPN18|pc|chr2:130373156:130375409:+	0	+
#Deleted in new
chr2	130374665	130374866	ENSG00000072135.12|PTPN18|pc|chr2:130374665:130374866:+	0	+
#Duplicated in new
chr2	130463798	130464144	ENSG00000196834.11|POTEI|pc|chr2:130463798:130464144:-	0	-
#Deleted in new
chr2	130474906	130474951	ENSG00000196834.11|POTEI|pc|chr2:130474906:130474951:-	0	-
#Deleted in new
chr2	130482002	130482073	ENSG00000196834.11|POTEI|pc|chr2:130482002:130482073:-	0	-
#Deleted in new
chr2	130488031	130488198	ENSG00000196834.11|POTEI|pc|chr2:130488031:130488198:-	0	-
#Deleted in new
chr2	130488188	130488201	ENSG00000196834.11|POTEI|pc|chr2:130488188:130488201:-	0	-
#Partially deleted in new
chr2	130508714	130509666	ENSG00000196834.11|POTEI|pc|chr2:130508714:130509666:-	0	-
#Deleted in new
chr2	130515996	130516353	ENSG00000225819.1|AC013269.3|lncRNA|chr2:130515996:130516353:-	0	-
#Deleted in new
chr2	130526604	130526691	ENSG00000225819.1|AC013269.3|lncRNA|chr2:130526604:130526691:-	0	-
#Partially deleted in new
chr2	130527695	130528604	ENSG00000152093.7|CFC1B|pc|chr2:130527695:130528604:+	0	+
#Deleted in new
chr2	130530274	130530436	ENSG00000225341.1|AC013269.2|lncRNA|chr2:130530274:130530436:+	0	+
#Deleted in new
chr2	130536617	130537182	ENSG00000225341.1|AC013269.2|lncRNA|chr2:130536617:130537182:+	0	+
#Deleted in new
chr2	130542453	130542494	ENSG00000184761.7|AC013269.1|pc|chr2:130542453:130542494:-	0	-
#Deleted in new
chr2	130549763	130549883	ENSG00000184761.7|AC013269.1|pc|chr2:130549763:130549883:-	0	-
#Deleted in new
chr2	130570828	130570980	ENSG00000183292.12|TISP43|pc|chr2:130570828:130570980:+	0	+
#Deleted in new
chr2	130570839	130570980	ENSG00000183292.12|TISP43|pc|chr2:130570839:130570980:+	0	+
#Deleted in new
chr2	130570848	130570980	ENSG00000183292.12|TISP43|pc|chr2:130570848:130570980:+	0	+
#Deleted in new
chr2	130570860	130570980	ENSG00000183292.12|TISP43|pc|chr2:130570860:130570980:+	0	+
#Deleted in new
chr2	130570885	130570980	ENSG00000183292.12|TISP43|pc|chr2:130570885:130570980:+	0	+
#Partially deleted in new
chr2	130576672	130577341	ENSG00000183292.12|TISP43|pc|chr2:130576672:130577341:+	0	+
#Deleted in new
chr2	130578238	130578279	ENSG00000183292.12|TISP43|pc|chr2:130578238:130578279:+	0	+
#Deleted in new
chr2	130582257	130582368	ENSG00000183292.12|TISP43|pc|chr2:130582257:130582368:+	0	+
#Deleted in new
chr2	130582257	130583672	ENSG00000183292.12|TISP43|pc|chr2:130582257:130583672:+	0	+
#Deleted in new
chr2	130582260	130582406	ENSG00000183292.12|TISP43|pc|chr2:130582260:130582406:+	0	+
#Deleted in new
chr2	130582260	130584161	ENSG00000183292.12|TISP43|pc|chr2:130582260:130584161:+	0	+
#Deleted in new
chr2	130583548	130584113	ENSG00000232408.1|AC140481.2|lncRNA|chr2:130583548:130584113:-	0	-
#Partially deleted in new
chr21	30590104	30590397	ENSG00000206106.2|KRTAP22-2|pc|chr21:30590104:30590397:-	0	-
#Deleted in new
chr2	130590333	130590463	ENSG00000232408.1|AC140481.2|lncRNA|chr2:130590333:130590463:-	0	-
#Partially deleted in new
chr2	130592167	130593076	ENSG00000136698.8|CFC1|pc|chr2:130592167:130593076:-	0	-
#Deleted in new
chr2	130638618	130638689	ENSG00000222038.3|POTEJ|pc|chr2:130638618:130638689:+	0	+
#Deleted in new
chr2	130645736	130645781	ENSG00000222038.3|POTEJ|pc|chr2:130645736:130645781:+	0	+
#Deleted in new
chr2	130683330	130683528	ENSG00000282944.1|AC140481.3|lncRNA|chr2:130683330:130683528:+	0	+
#Deleted in new
chr2	130685133	130685356	ENSG00000282944.1|AC140481.3|lncRNA|chr2:130685133:130685356:+	0	+
#Deleted in new
chr2	130729069	130730336	ENSG00000173302.5|GPR148|pc|chr2:130729069:130730336:+	0	+
#Deleted in new
chr2	130743537	130744046	ENSG00000229797.1|AC140481.1|lncRNA|chr2:130743537:130744046:-	0	-
#Deleted in new
chr2	130749694	130750066	ENSG00000229797.1|AC140481.1|lncRNA|chr2:130749694:130750066:-	0	-
#Deleted in new
chr2	130830977	130833116	ENSG00000233221.6|AC133785.1|lncRNA|chr2:130830977:130833116:-	0	-
#Deleted in new
chr2	131011682	131011908	ENSG00000136002.18|ARHGEF4|pc|chr2:131011682:131011908:+	0	+
#Deleted in new
chr2	131093213	131093460	ENSG00000152102.17|FAM168B|pc|chr2:131093213:131093460:-	0	-
#Deleted in new
chr2	131093331	131093428	ENSG00000152102.17|FAM168B|pc|chr2:131093331:131093428:-	0	-
#Deleted in new
chr2	131104846	131105398	ENSG00000115762.16|PLEKHB2|pc|chr2:131104846:131105398:+	0	+
#Deleted in new
chr2	131104943	131105398	ENSG00000115762.16|PLEKHB2|pc|chr2:131104943:131105398:+	0	+
#Deleted in new
chr2	131105301	131105398	ENSG00000115762.16|PLEKHB2|pc|chr2:131105301:131105398:+	0	+
#Deleted in new
chr2	131105328	131105398	ENSG00000115762.16|PLEKHB2|pc|chr2:131105328:131105398:+	0	+
#Deleted in new
chr2	131105335	131105398	ENSG00000115762.16|PLEKHB2|pc|chr2:131105335:131105398:+	0	+
#Deleted in new
chr2	131105352	131105398	ENSG00000115762.16|PLEKHB2|pc|chr2:131105352:131105398:+	0	+
#Deleted in new
chr2	131107460	131107990	ENSG00000115762.16|PLEKHB2|pc|chr2:131107460:131107990:+	0	+
#Deleted in new
chr2	131107555	131108064	ENSG00000115762.16|PLEKHB2|pc|chr2:131107555:131108064:+	0	+
#Deleted in new
chr2	131118890	131118978	ENSG00000115762.16|PLEKHB2|pc|chr2:131118890:131118978:+	0	+
#Deleted in new
chr2	131144407	131144449	ENSG00000115762.16|PLEKHB2|pc|chr2:131144407:131144449:+	0	+
#Partially deleted in new
chr2	131218066	131218923	ENSG00000188219.14|POTEE|pc|chr2:131218066:131218923:+	0	+
#Deleted in new
chr2	131245406	131245477	ENSG00000188219.14|POTEE|pc|chr2:131245406:131245477:+	0	+
#Deleted in new
chr2	131252525	131252570	ENSG00000188219.14|POTEE|pc|chr2:131252525:131252570:+	0	+
#Duplicated in new
chr2	131263354	131263700	ENSG00000188219.14|POTEE|pc|chr2:131263354:131263700:+	0	+
#Duplicated in new
chr2	131353019	131353709	ENSG00000115762.16|PLEKHB2|pc|chr2:131353019:131353709:+	0	+
#Deleted in new
chr2	131364738	131364881	ENSG00000283303.1|AC073869.5|lncRNA|chr2:131364738:131364881:+	0	+
#Deleted in new
chr2	131402900	131403251	ENSG00000223631.1|LINC01120|lncRNA|chr2:131402900:131403251:+	0	+
#Deleted in new
chr2	131405212	131405447	ENSG00000223631.1|LINC01120|lncRNA|chr2:131405212:131405447:+	0	+
#Deleted in new
chr2	131407462	131407532	ENSG00000223631.1|LINC01120|lncRNA|chr2:131407462:131407532:+	0	+
#Deleted in new
chr2	131478716	131478768	ENSG00000075886.10|TUBA3D|pc|chr2:131478716:131478768:+	0	+
#Deleted in new
chr2	131486423	131486561	ENSG00000173272.15|MZT2A|pc|chr2:131486423:131486561:-	0	-
#Deleted in new
chr2	131528492	131528627	ENSG00000163040.14|CCDC74A|pc|chr2:131528492:131528627:+	0	+
#Partially deleted in new
chr2	131648253	131649615	ENSG00000224559.2|LINC01087|lncRNA|chr2:131648253:131649615:+	0	+
#Deleted in new
chr21	31653592	31655427	ENSG00000234509.1|AP000253.1|lncRNA|chr21:31653592:31655427:-	0	-
#Deleted in new
chr21	31661548	31661734	ENSG00000142168.14|SOD1|pc|chr21:31661548:31661734:+	0	+
#Deleted in new
chr21	31735731	31736407	ENSG00000273091.1|AP000255.1|lncRNA|chr21:31735731:31736407:+	0	+
#Deleted in new
chr2	131794960	131795746	ENSG00000186825.5|C2orf27B|lncRNA|chr2:131794960:131795746:-	0	-
#Deleted in new
chr2	131800891	131801150	ENSG00000186825.5|C2orf27B|lncRNA|chr2:131800891:131801150:-	0	-
#Deleted in new
chr2	131801381	131801661	ENSG00000186825.5|C2orf27B|lncRNA|chr2:131801381:131801661:-	0	-
#Deleted in new
chr2	131964730	131966772	ENSG00000235615.2|AJ239322.1|lncRNA|chr2:131964730:131966772:-	0	-
#Deleted in new
chr2	131965021	131965535	ENSG00000244337.2|AJ239322.2|lncRNA|chr2:131965021:131965535:+	0	+
#Deleted in new
chr2	131967315	131967390	ENSG00000235615.2|AJ239322.1|lncRNA|chr2:131967315:131967390:-	0	-
#Deleted in new
chr2	131979781	131979873	ENSG00000235615.2|AJ239322.1|lncRNA|chr2:131979781:131979873:-	0	-
#Deleted in new
chr2	131983936	131984343	ENSG00000236485.1|LINC01945|lncRNA|chr2:131983936:131984343:-	0	-
#Deleted in new
chr21	32044101	32044633	ENSG00000142149.8|HUNK|pc|chr21:32044101:32044633:+	0	+
#Deleted in new
chr21	32080315	32080517	ENSG00000230323.5|LINC00159|lncRNA|chr21:32080315:32080517:-	0	-
#Deleted in new
chr2	132147590	132148228	ENSG00000163046.15|ANKRD30BL|pc|chr2:132147590:132148228:-	0	-
#Deleted in new
chr2	132147906	132148228	ENSG00000163046.15|ANKRD30BL|pc|chr2:132147906:132148228:-	0	-
#Deleted in new
chr2	132147908	132148228	ENSG00000163046.15|ANKRD30BL|pc|chr2:132147908:132148228:-	0	-
#Partially deleted in new
chr2	132152188	132152738	ENSG00000163046.15|ANKRD30BL|pc|chr2:132152188:132152738:-	0	-
#Deleted in new
chr21	32156407	32156502	ENSG00000230323.5|LINC00159|lncRNA|chr21:32156407:32156502:-	0	-
#Partially deleted in new
chr2	132161487	132161955	ENSG00000163046.15|ANKRD30BL|pc|chr2:132161487:132161955:-	0	-
#Deleted in new
chr2	132257528	132257969	ENSG00000163046.15|ANKRD30BL|pc|chr2:132257528:132257969:-	0	-
#Partially deleted in new
chr21	32259803	32261585	ENSG00000261610.1|AP000265.1|lncRNA|chr21:32259803:32261585:-	0	-
#Deleted in new
chr21	32277862	32278084	ENSG00000227256.1|MIS18A-AS1|lncRNA|chr21:32277862:32278084:+	0	+
#Deleted in new
chr21	32280592	32280988	ENSG00000227256.1|MIS18A-AS1|lncRNA|chr21:32280592:32280988:+	0	+
#Deleted in new
chr2	132285794	132285892	ENSG00000230803.1|AC097532.1|lncRNA|chr2:132285794:132285892:-	0	-
#Deleted in new
chr2	132288901	132289065	ENSG00000230803.1|AC097532.1|lncRNA|chr2:132288901:132289065:-	0	-
#Deleted in new
chr21	32291812	32291849	ENSG00000170262.12|MRAP|pc|chr21:32291812:32291849:+	0	+
#Deleted in new
chr21	32292992	32293132	ENSG00000170262.12|MRAP|pc|chr21:32292992:32293132:+	0	+
#Deleted in new
chr2	132294317	132294377	ENSG00000230803.1|AC097532.1|lncRNA|chr2:132294317:132294377:-	0	-
#Deleted in new
chr21	32308518	32308737	ENSG00000232623.1|AP000266.1|lncRNA|chr21:32308518:32308737:-	0	-
#Deleted in new
chr21	32335205	32335630	ENSG00000142207.6|URB1|pc|chr21:32335205:32335630:-	0	-
#Partially deleted in new
chr2	132345615	132347297	ENSG00000272769.1|AC097532.2|lncRNA|chr2:132345615:132347297:-	0	-
#Deleted in new
chr21	32493652	32493762	ENSG00000166979.12|EVA1C|pc|chr21:32493652:32493762:+	0	+
#Deleted in new
chr21	32572237	32572595	ENSG00000186842.4|LINC00846|lncRNA|chr21:32572237:32572595:-	0	-
#Deleted in new
chr21	32574095	32574124	ENSG00000186842.4|LINC00846|lncRNA|chr21:32574095:32574124:-	0	-
#Deleted in new
chr21	32574575	32575881	ENSG00000186842.4|LINC00846|lncRNA|chr21:32574575:32575881:-	0	-
#Deleted in new
chr21	32577425	32577676	ENSG00000242220.6|TCP10L|pc|chr21:32577425:32577676:-	0	-
#Deleted in new
chr21	32578693	32578831	ENSG00000242220.6|TCP10L|pc|chr21:32578693:32578831:-	0	-
#Deleted in new
chr21	32578821	32578831	ENSG00000265590.9|AP000275.2|pc|chr21:32578821:32578831:-	0	-
#Deleted in new
chr21	32578822	32578831	ENSG00000265590.9|AP000275.2|pc|chr21:32578822:32578831:-	0	-
#Deleted in new
chr21	32587312	32587373	ENSG00000242220.6|TCP10L|pc|chr21:32587312:32587373:-	0	-
#Deleted in new
chr21	32592078	32592418	ENSG00000159079.18|C21orf59|pc|chr21:32592078:32592418:-	0	-
#Deleted in new
chr21	32658470	32658561	ENSG00000159082.17|SYNJ1|pc|chr21:32658470:32658561:-	0	-
#Deleted in new
chr2	132725626	132725759	ENSG00000176771.16|NCKAP5|pc|chr2:132725626:132725759:-	0	-
#Deleted in new
chr21	32732518	32732916	ENSG00000238197.5|PAXBP1-AS1|lncRNA|chr21:32732518:32732916:+	0	+
#Deleted in new
chr21	32733588	32733657	ENSG00000238197.5|PAXBP1-AS1|lncRNA|chr21:32733588:32733657:+	0	+
#Deleted in new
chr21	32741392	32741622	ENSG00000159086.14|PAXBP1|pc|chr21:32741392:32741622:-	0	-
#Deleted in new
chr21	32741418	32741622	ENSG00000159086.14|PAXBP1|pc|chr21:32741418:32741622:-	0	-
#Partially deleted in new
chr21	32742261	32743122	ENSG00000238197.5|PAXBP1-AS1|lncRNA|chr21:32742261:32743122:+	0	+
#Deleted in new
chr21	32742359	32742501	ENSG00000159086.14|PAXBP1|pc|chr21:32742359:32742501:-	0	-
#Deleted in new
chr21	32784774	32784919	ENSG00000205930.8|C21orf62-AS1|lncRNA|chr21:32784774:32784919:+	0	+
#Deleted in new
chr21	32784796	32784919	ENSG00000205930.8|C21orf62-AS1|lncRNA|chr21:32784796:32784919:+	0	+
#Deleted in new
chr21	32788611	32788701	ENSG00000205930.8|C21orf62-AS1|lncRNA|chr21:32788611:32788701:+	0	+
#Partially deleted in new
chr21	32790672	32791504	ENSG00000279690.1|AP000280.1|lncRNA|chr21:32790672:32791504:-	0	-
#Partially deleted in new
chr21	32796938	32798969	ENSG00000205930.8|C21orf62-AS1|lncRNA|chr21:32796938:32798969:+	0	+
#Deleted in new
chr21	32807641	32807716	ENSG00000205929.10|C21orf62|pc|chr21:32807641:32807716:-	0	-
#Deleted in new
chr21	32810573	32810654	ENSG00000205929.10|C21orf62|pc|chr21:32810573:32810654:-	0	-
#Deleted in new
chr21	32885931	32886068	ENSG00000205930.8|C21orf62-AS1|lncRNA|chr21:32885931:32886068:+	0	+
#Deleted in new
chr21	32893577	32893735	ENSG00000205930.8|C21orf62-AS1|lncRNA|chr21:32893577:32893735:+	0	+
#Partially deleted in new
chr21	32913648	32914129	ENSG00000227757.3|AP000282.1|lncRNA|chr21:32913648:32914129:-	0	-
#Deleted in new
chr2	132915556	132915651	ENSG00000233729.1|AC016909.2|lncRNA|chr2:132915556:132915651:+	0	+
#Deleted in new
chr2	132929878	132931494	ENSG00000233729.1|AC016909.2|lncRNA|chr2:132929878:132931494:+	0	+
#Deleted in new
chr21	32958887	32959089	ENSG00000228961.1|LINC01690|lncRNA|chr21:32958887:32959089:+	0	+
#Deleted in new
chr21	32960192	32960566	ENSG00000228961.1|LINC01690|lncRNA|chr21:32960192:32960566:+	0	+
#Deleted in new
chr21	33062791	33062816	ENSG00000232539.1|LINC00945|lncRNA|chr21:33062791:33062816:+	0	+
#Deleted in new
chr21	33123611	33123703	ENSG00000226527.1|AP000289.1|lncRNA|chr21:33123611:33123703:-	0	-
#Deleted in new
chr21	33156631	33156745	ENSG00000226433.1|AP000290.1|lncRNA|chr21:33156631:33156745:+	0	+
#Deleted in new
chr21	33158775	33159110	ENSG00000226433.1|AP000290.1|lncRNA|chr21:33158775:33159110:+	0	+
#Deleted in new
chr21	33165469	33165691	ENSG00000229086.4|LINC01548|lncRNA|chr21:33165469:33165691:-	0	-
#Deleted in new
chr21	33165610	33165691	ENSG00000229086.4|LINC01548|lncRNA|chr21:33165610:33165691:-	0	-
#Deleted in new
chr21	33168442	33168581	ENSG00000229086.4|LINC01548|lncRNA|chr21:33168442:33168581:-	0	-
#Deleted in new
chr21	33169695	33169833	ENSG00000229086.4|LINC01548|lncRNA|chr21:33169695:33169833:-	0	-
#Deleted in new
chr21	33170140	33170236	ENSG00000229086.4|LINC01548|lncRNA|chr21:33170140:33170236:-	0	-
#Deleted in new
chr21	33170140	33170251	ENSG00000229086.4|LINC01548|lncRNA|chr21:33170140:33170251:-	0	-
#Deleted in new
chr21	33170563	33170649	ENSG00000229086.4|LINC01548|lncRNA|chr21:33170563:33170649:-	0	-
#Deleted in new
chr21	33252137	33252248	ENSG00000159110.19|IFNAR2|pc|chr21:33252137:33252248:+	0	+
#Partially deleted in new
chr21	33262560	33262756	ENSG00000159110.19|IFNAR2|pc|chr21:33262560:33262756:+	0	+
#Partially deleted in new
chr21	33262560	33262757	ENSG00000159110.19|IFNAR2|pc|chr21:33262560:33262757:+	0	+
#Partially deleted in new
chr21	33266062	33266260	ENSG00000223799.1|IL10RB-AS1|lncRNA|chr21:33266062:33266260:-	0	-
#Deleted in new
chr2	133268915	133269010	ENSG00000226953.7|AC010890.1|lncRNA|chr2:133268915:133269010:+	0	+
#Deleted in new
chr2	133268915	133269041	ENSG00000226953.7|AC010890.1|lncRNA|chr2:133268915:133269041:+	0	+
#Deleted in new
chr21	33294011	33294127	ENSG00000243646.9|IL10RB|pc|chr21:33294011:33294127:+	0	+
#Deleted in new
chr21	33324476	33324638	ENSG00000142166.12|IFNAR1|pc|chr21:33324476:33324638:+	0	+
#Partially deleted in new
chr21	33355315	33359862	ENSG00000142166.12|IFNAR1|pc|chr21:33355315:33359862:+	0	+
#Deleted in new
chr21	33402895	33403616	ENSG00000159128.14|IFNGR2|pc|chr21:33402895:33403616:+	0	+
#Deleted in new
chr21	33403426	33403616	ENSG00000159128.14|IFNGR2|pc|chr21:33403426:33403616:+	0	+
#Deleted in new
chr21	33403431	33403616	ENSG00000159128.14|IFNGR2|pc|chr21:33403431:33403616:+	0	+
#Deleted in new
chr21	33403440	33403616	ENSG00000159128.14|IFNGR2|pc|chr21:33403440:33403616:+	0	+
#Deleted in new
chr21	33403465	33403616	ENSG00000159128.14|IFNGR2|pc|chr21:33403465:33403616:+	0	+
#Deleted in new
chr21	33410835	33410892	ENSG00000159128.14|IFNGR2|pc|chr21:33410835:33410892:+	0	+
#Deleted in new
chr21	33410840	33410892	ENSG00000159128.14|IFNGR2|pc|chr21:33410840:33410892:+	0	+
#Deleted in new
chr2	133431665	133431817	ENSG00000232474.1|NCKAP5-IT1|lncRNA|chr2:133431665:133431817:-	0	-
#Deleted in new
chr21	33439213	33439297	ENSG00000142188.16|TMEM50B|pc|chr21:33439213:33439297:-	0	-
#Deleted in new
chr21	33447017	33447140	ENSG00000142188.16|TMEM50B|pc|chr21:33447017:33447140:-	0	-
#Deleted in new
chr21	33448781	33448879	ENSG00000142188.16|TMEM50B|pc|chr21:33448781:33448879:-	0	-
#Partially deleted in new
chr21	33448781	33448964	ENSG00000142188.16|TMEM50B|pc|chr21:33448781:33448964:-	0	-
#Deleted in new
chr21	33456003	33456097	ENSG00000142188.16|TMEM50B|pc|chr21:33456003:33456097:-	0	-
#Deleted in new
chr21	33482498	33482588	ENSG00000231355.1|AP000302.1|lncRNA|chr21:33482498:33482588:-	0	-
#Deleted in new
chr21	33483005	33483059	ENSG00000231355.1|AP000302.1|lncRNA|chr21:33483005:33483059:-	0	-
#Deleted in new
chr21	33483736	33484258	ENSG00000231355.1|AP000302.1|lncRNA|chr21:33483736:33484258:-	0	-
#Partially deleted in new
chr21	33509187	33509920	ENSG00000159131.16|GART|pc|chr21:33509187:33509920:-	0	-
#Deleted in new
chr21	33529566	33529768	ENSG00000159131.16|GART|pc|chr21:33529566:33529768:-	0	-
#Deleted in new
chr21	33547000	33547039	ENSG00000159140.19|SON|pc|chr21:33547000:33547039:+	0	+
#Deleted in new
chr2	133554314	133554432	ENSG00000223430.1|AC011243.1|lncRNA|chr2:133554314:133554432:+	0	+
#Deleted in new
chr2	133556751	133556847	ENSG00000223430.1|AC011243.1|lncRNA|chr2:133556751:133556847:+	0	+
#Deleted in new
chr2	133559049	133559117	ENSG00000176771.16|NCKAP5|pc|chr2:133559049:133559117:-	0	-
#Partially deleted in new
chr21	33594506	33595614	ENSG00000205758.11|CRYZL1|pc|chr21:33594506:33595614:-	0	-
#Partially deleted in new
chr21	33616286	33616603	ENSG00000205758.11|CRYZL1|pc|chr21:33616286:33616603:-	0	-
#Deleted in new
chr21	33633645	33633702	ENSG00000205758.11|CRYZL1|pc|chr21:33633645:33633702:-	0	-
#Deleted in new
chr21	33639744	33640188	ENSG00000205758.11|CRYZL1|pc|chr21:33639744:33640188:-	0	-
#Deleted in new
chr21	33689321	33689383	ENSG00000205726.14|ITSN1|pc|chr21:33689321:33689383:+	0	+
#Deleted in new
chr21	33716430	33716555	ENSG00000205726.14|ITSN1|pc|chr21:33716430:33716555:+	0	+
#Deleted in new
chr21	33721931	33721991	ENSG00000205726.14|ITSN1|pc|chr21:33721931:33721991:+	0	+
#Deleted in new
chr21	33756786	33757073	ENSG00000205726.14|ITSN1|pc|chr21:33756786:33757073:+	0	+
#Deleted in new
chr21	33906448	33906500	ENSG00000241837.6|ATP5O|pc|chr21:33906448:33906500:-	0	-
#Partially deleted in new
chr21	33906448	33907453	ENSG00000241837.6|ATP5O|pc|chr21:33906448:33907453:-	0	-
#Deleted in new
chr21	33906725	33906821	ENSG00000241837.6|ATP5O|pc|chr21:33906725:33906821:-	0	-
#Deleted in new
chr21	33906727	33906794	ENSG00000241837.6|ATP5O|pc|chr21:33906727:33906794:-	0	-
#Deleted in new
chr21	33917012	33917066	ENSG00000237945.7|LINC00649|lncRNA|chr21:33917012:33917066:+	0	+
#Deleted in new
chr21	33923337	33923458	ENSG00000237945.7|LINC00649|lncRNA|chr21:33923337:33923458:+	0	+
#Deleted in new
chr21	33923337	33923479	ENSG00000237945.7|LINC00649|lncRNA|chr21:33923337:33923479:+	0	+
#Deleted in new
chr21	33923432	33923458	ENSG00000237945.7|LINC00649|lncRNA|chr21:33923432:33923458:+	0	+
#Deleted in new
chr21	33931159	33931742	ENSG00000237945.7|LINC00649|lncRNA|chr21:33931159:33931742:+	0	+
#Deleted in new
chr21	33931162	33931742	ENSG00000237945.7|LINC00649|lncRNA|chr21:33931162:33931742:+	0	+
#Deleted in new
chr21	33931213	33931267	ENSG00000237945.7|LINC00649|lncRNA|chr21:33931213:33931267:+	0	+
#Deleted in new
chr21	33931222	33931352	ENSG00000237945.7|LINC00649|lncRNA|chr21:33931222:33931352:+	0	+
#Deleted in new
chr21	33931470	33931607	ENSG00000249209.2|AP000311.1|pc|chr21:33931470:33931607:-	0	-
#Deleted in new
chr21	33938224	33938301	ENSG00000237945.7|LINC00649|lncRNA|chr21:33938224:33938301:+	0	+
#Deleted in new
chr21	33938224	33938372	ENSG00000237945.7|LINC00649|lncRNA|chr21:33938224:33938372:+	0	+
#Deleted in new
chr21	33943033	33943130	ENSG00000237945.7|LINC00649|lncRNA|chr21:33943033:33943130:+	0	+
#Deleted in new
chr21	33943033	33943145	ENSG00000237945.7|LINC00649|lncRNA|chr21:33943033:33943145:+	0	+
#Deleted in new
chr21	33943555	33943596	ENSG00000237945.7|LINC00649|lncRNA|chr21:33943555:33943596:+	0	+
#Deleted in new
chr21	33943624	33943876	ENSG00000237945.7|LINC00649|lncRNA|chr21:33943624:33943876:+	0	+
#Deleted in new
chr21	33944587	33944935	ENSG00000237945.7|LINC00649|lncRNA|chr21:33944587:33944935:+	0	+
#Deleted in new
chr21	33945809	33945895	ENSG00000237945.7|LINC00649|lncRNA|chr21:33945809:33945895:+	0	+
#Deleted in new
chr21	33951109	33951354	ENSG00000237945.7|LINC00649|lncRNA|chr21:33951109:33951354:+	0	+
#Deleted in new
chr21	33951123	33951297	ENSG00000237945.7|LINC00649|lncRNA|chr21:33951123:33951297:+	0	+
#Deleted in new
chr21	33951123	33951354	ENSG00000237945.7|LINC00649|lncRNA|chr21:33951123:33951354:+	0	+
#Deleted in new
chr21	33962064	33963958	ENSG00000237945.7|LINC00649|lncRNA|chr21:33962064:33963958:+	0	+
#Deleted in new
chr21	33962228	33962649	ENSG00000237945.7|LINC00649|lncRNA|chr21:33962228:33962649:+	0	+
#Deleted in new
chr21	33967023	33967518	ENSG00000237945.7|LINC00649|lncRNA|chr21:33967023:33967518:+	0	+
#Deleted in new
chr21	33967100	33967350	ENSG00000273102.1|AP000569.1|lncRNA|chr21:33967100:33967350:-	0	-
#Deleted in new
chr21	33967281	33967518	ENSG00000237945.7|LINC00649|lncRNA|chr21:33967281:33967518:+	0	+
#Deleted in new
chr2	1341043	1341699	ENSG00000233553.1|AC108462.1|lncRNA|chr2:1341043:1341699:-	0	-
#Partially deleted in new
chr21	34122173	34125480	ENSG00000243927.5|MRPS6|pc|chr21:34122173:34125480:+	0	+
#Partially deleted in new
chr21	34123952	34125141	ENSG00000243927.5|MRPS6|pc|chr21:34123952:34125141:+	0	+
#Deleted in new
chr21	34157723	34157852	ENSG00000227456.7|LINC00310|lncRNA|chr21:34157723:34157852:+	0	+
#Deleted in new
chr21	34182707	34183118	ENSG00000227456.7|LINC00310|lncRNA|chr21:34182707:34183118:+	0	+
#Deleted in new
chr21	34182707	34183192	ENSG00000227456.7|LINC00310|lncRNA|chr21:34182707:34183192:+	0	+
#Deleted in new
chr21	34182707	34183245	ENSG00000227456.7|LINC00310|lncRNA|chr21:34182707:34183245:+	0	+
#Partially deleted in new
chr21	34188216	34188662	ENSG00000227456.7|LINC00310|lncRNA|chr21:34188216:34188662:+	0	+
#Deleted in new
chr21	34188767	34188877	ENSG00000227456.7|LINC00310|lncRNA|chr21:34188767:34188877:+	0	+
#Deleted in new
chr21	34188767	34188917	ENSG00000227456.7|LINC00310|lncRNA|chr21:34188767:34188917:+	0	+
#Deleted in new
chr21	34188767	34189066	ENSG00000227456.7|LINC00310|lncRNA|chr21:34188767:34189066:+	0	+
#Deleted in new
chr21	34188767	34189183	ENSG00000227456.7|LINC00310|lncRNA|chr21:34188767:34189183:+	0	+
#Deleted in new
chr21	34188767	34189197	ENSG00000227456.7|LINC00310|lncRNA|chr21:34188767:34189197:+	0	+
#Deleted in new
chr21	34188767	34190244	ENSG00000227456.7|LINC00310|lncRNA|chr21:34188767:34190244:+	0	+
#Deleted in new
chr21	34215499	34215540	ENSG00000214955.5|AP000317.1|lncRNA|chr21:34215499:34215540:+	0	+
#Deleted in new
chr21	34215499	34215540	ENSG00000272657.1|AP000317.2|lncRNA|chr21:34215499:34215540:+	0	+
#Deleted in new
chr2	134253094	134253218	ENSG00000152127.8|MGAT5|pc|chr2:134253094:134253218:+	0	+
#Deleted in new
chr2	134253103	134253218	ENSG00000152127.8|MGAT5|pc|chr2:134253103:134253218:+	0	+
#Deleted in new
chr21	34293680	34293756	ENSG00000214955.5|AP000317.1|lncRNA|chr21:34293680:34293756:+	0	+
#Deleted in new
chr21	34293680	34293756	ENSG00000272657.1|AP000317.2|lncRNA|chr21:34293680:34293756:+	0	+
#Deleted in new
chr21	34359905	34360033	ENSG00000272657.1|AP000317.2|lncRNA|chr21:34359905:34360033:+	0	+
#Partially deleted in new
chr21	34375603	34375896	ENSG00000205670.10|SMIM11A|pc|chr21:34375603:34375896:+	0	+
#Partially deleted in new
chr21	34388628	34389153	ENSG00000205670.10|SMIM11A|pc|chr21:34388628:34389153:+	0	+
#Partially deleted in new
chr21	34388628	34389154	ENSG00000205670.10|SMIM11A|pc|chr21:34388628:34389154:+	0	+
#Deleted in new
chr21	34404722	34405112	ENSG00000205670.10|SMIM11A|pc|chr21:34404722:34405112:+	0	+
#Deleted in new
chr21	34407679	34407866	ENSG00000205670.10|SMIM11A|pc|chr21:34407679:34407866:+	0	+
#Deleted in new
chr21	34412199	34412587	ENSG00000273104.1|AP000322.3|lncRNA|chr21:34412199:34412587:+	0	+
#Deleted in new
chr21	34425507	34426017	ENSG00000272958.1|AP000322.2|lncRNA|chr21:34425507:34426017:+	0	+
#Partially deleted in new
chr2	134458031	134459274	ENSG00000152128.13|TMEM163|pc|chr2:134458031:134459274:-	0	-
#Deleted in new
chr21	34459898	34459938	ENSG00000180509.11|KCNE1|pc|chr21:34459898:34459938:-	0	-
#Partially deleted in new
chr2	134466113	134470036	ENSG00000152128.13|TMEM163|pc|chr2:134466113:134470036:-	0	-
#Deleted in new
chr21	34509455	34511315	ENSG00000180509.11|KCNE1|pc|chr21:34509455:34511315:-	0	-
#Deleted in new
chr21	34511100	34511243	ENSG00000180509.11|KCNE1|pc|chr21:34511100:34511243:-	0	-
#Deleted in new
chr21	34511100	34511315	ENSG00000180509.11|KCNE1|pc|chr21:34511100:34511315:-	0	-
#Deleted in new
chr21	34511100	34511325	ENSG00000180509.11|KCNE1|pc|chr21:34511100:34511325:-	0	-
#Deleted in new
chr21	34511100	34511339	ENSG00000180509.11|KCNE1|pc|chr21:34511100:34511339:-	0	-
#Deleted in new
chr21	34559766	34560179	ENSG00000159200.17|RCAN1|pc|chr21:34559766:34560179:-	0	-
#Deleted in new
chr2	1346374	1346568	ENSG00000233553.1|AC108462.1|lncRNA|chr2:1346374:1346568:-	0	-
#Deleted in new
chr21	34706026	34706080	ENSG00000159212.12|CLIC6|pc|chr21:34706026:34706080:+	0	+
#Deleted in new
chr21	34723806	34723953	ENSG00000230978.1|LINC00160|lncRNA|chr21:34723806:34723953:-	0	-
#Deleted in new
chr21	34724045	34724196	ENSG00000230978.1|LINC00160|lncRNA|chr21:34724045:34724196:-	0	-
#Deleted in new
chr2	134735463	134735581	ENSG00000224043.7|CCNT2-AS1|lncRNA|chr2:134735463:134735581:-	0	-
#Deleted in new
chr21	34782124	34782190	ENSG00000234380.1|LINC01426|lncRNA|chr21:34782124:34782190:+	0	+
#Deleted in new
chr2	134844364	134844471	ENSG00000153086.13|ACMSD|pc|chr2:134844364:134844471:+	0	+
#Deleted in new
chr2	134844422	134844471	ENSG00000153086.13|ACMSD|pc|chr2:134844422:134844471:+	0	+
#Deleted in new
chr2	134868943	134869041	ENSG00000224043.7|CCNT2-AS1|lncRNA|chr2:134868943:134869041:-	0	-
#Partially deleted in new
chr2	134872468	134873661	ENSG00000153086.13|ACMSD|pc|chr2:134872468:134873661:+	0	+
#Deleted in new
chr2	134877519	134877643	ENSG00000224043.7|CCNT2-AS1|lncRNA|chr2:134877519:134877643:-	0	-
#Partially deleted in new
chr2	134983179	134983331	ENSG00000176601.12|MAP3K19|pc|chr2:134983179:134983331:-	0	-
#Partially deleted in new
chr2	134991340	134991580	ENSG00000176601.12|MAP3K19|pc|chr2:134991340:134991580:-	0	-
#Deleted in new
chr2	135005434	135005531	ENSG00000176601.12|MAP3K19|pc|chr2:135005434:135005531:-	0	-
#Deleted in new
chr2	135005520	135005531	ENSG00000176601.12|MAP3K19|pc|chr2:135005520:135005531:-	0	-
#Deleted in new
chr2	135023208	135023376	ENSG00000176601.12|MAP3K19|pc|chr2:135023208:135023376:-	0	-
#Deleted in new
chr2	135023456	135023649	ENSG00000176601.12|MAP3K19|pc|chr2:135023456:135023649:-	0	-
#Deleted in new
chr2	135089653	135089872	ENSG00000115839.17|RAB3GAP1|pc|chr2:135089653:135089872:+	0	+
#Deleted in new
chr2	135089854	135089872	ENSG00000115839.17|RAB3GAP1|pc|chr2:135089854:135089872:+	0	+
#Partially deleted in new
chr2	135136915	135137347	ENSG00000121988.17|ZRANB3|pc|chr2:135136915:135137347:-	0	-
#Partially deleted in new
chr2	135136916	135137347	ENSG00000121988.17|ZRANB3|pc|chr2:135136916:135137347:-	0	-
#Deleted in new
chr2	135175326	135175588	ENSG00000115839.17|RAB3GAP1|pc|chr2:135175326:135175588:+	0	+
#Deleted in new
chr2	135175326	135175590	ENSG00000115839.17|RAB3GAP1|pc|chr2:135175326:135175590:+	0	+
#Deleted in new
chr2	135176248	135176394	ENSG00000115839.17|RAB3GAP1|pc|chr2:135176248:135176394:+	0	+
#Deleted in new
chr2	135238763	135238861	ENSG00000121988.17|ZRANB3|pc|chr2:135238763:135238861:-	0	-
#Deleted in new
chr2	135271300	135271395	ENSG00000121988.17|ZRANB3|pc|chr2:135271300:135271395:-	0	-
#Deleted in new
chr2	135345135	135345461	ENSG00000121988.17|ZRANB3|pc|chr2:135345135:135345461:-	0	-
#Deleted in new
chr2	1353687	1353864	ENSG00000172554.11|SNTG2|pc|chr2:1353687:1353864:+	0	+
#Deleted in new
chr2	13537672	13538014	ENSG00000229370.1|AC073062.1|lncRNA|chr2:13537672:13538014:+	0	+
#Deleted in new
chr2	135565736	135565925	ENSG00000048991.16|R3HDM1|pc|chr2:135565736:135565925:+	0	+
#Deleted in new
chr2	135568757	135568809	ENSG00000048991.16|R3HDM1|pc|chr2:135568757:135568809:+	0	+
#Deleted in new
chr2	135649086	135649331	ENSG00000048991.16|R3HDM1|pc|chr2:135649086:135649331:+	0	+
#Deleted in new
chr21	35654819	35654875	ENSG00000159216.18|RUNX1|pc|chr21:35654819:35654875:-	0	-
#Deleted in new
chr21	35713138	35713447	ENSG00000230794.1|AF015720.1|lncRNA|chr21:35713138:35713447:-	0	-
#Partially deleted in new
chr2	135721508	135722006	ENSG00000048991.16|R3HDM1|pc|chr2:135721508:135722006:+	0	+
#Deleted in new
chr2	135747657	135747765	ENSG00000144224.16|UBXN4|pc|chr2:135747657:135747765:+	0	+
#Deleted in new
chr2	135820190	135820639	ENSG00000226806.1|AC011893.1|lncRNA|chr2:135820190:135820639:+	0	+
#Partially deleted in new
chr2	135821674	135823087	ENSG00000226806.1|AC011893.1|lncRNA|chr2:135821674:135823087:+	0	+
#Deleted in new
chr21	35864284	35864467	ENSG00000159216.18|RUNX1|pc|chr21:35864284:35864467:-	0	-
#Partially deleted in new
chr2	135914468	135914866	ENSG00000115866.10|DARS|pc|chr2:135914468:135914866:-	0	-
#Deleted in new
chr21	35954659	35954825	ENSG00000159216.18|RUNX1|pc|chr21:35954659:35954825:-	0	-
#Deleted in new
chr21	35970074	35970167	ENSG00000159216.18|RUNX1|pc|chr21:35970074:35970167:-	0	-
#Deleted in new
chr21	35981750	35981916	ENSG00000159216.18|RUNX1|pc|chr21:35981750:35981916:-	0	-
#Deleted in new
chr2	135997122	135997242	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:135997122:135997242:+	0	+
#Deleted in new
chr2	136002000	136002126	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136002000:136002126:+	0	+
#Deleted in new
chr2	136003244	136003367	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136003244:136003367:+	0	+
#Deleted in new
chr2	136003269	136003367	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136003269:136003367:+	0	+
#Deleted in new
chr2	136003742	136003822	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136003742:136003822:+	0	+
#Deleted in new
chr21	36004563	36004667	ENSG00000159216.18|RUNX1|pc|chr21:36004563:36004667:-	0	-
#Deleted in new
chr2	136004992	136005218	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136004992:136005218:+	0	+
#Deleted in new
chr2	136004992	136005236	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136004992:136005236:+	0	+
#Deleted in new
chr21	36005337	36005865	ENSG00000231106.2|LINC01436|lncRNA|chr21:36005337:36005865:+	0	+
#Deleted in new
chr2	136007195	136007251	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136007195:136007251:+	0	+
#Deleted in new
chr2	136007195	136007319	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136007195:136007319:+	0	+
#Deleted in new
chr2	136007195	136007472	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136007195:136007472:+	0	+
#Deleted in new
chr2	136007195	136007583	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136007195:136007583:+	0	+
#Deleted in new
chr2	136007195	136007712	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136007195:136007712:+	0	+
#Deleted in new
chr2	136007195	136007748	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136007195:136007748:+	0	+
#Deleted in new
chr2	136007195	136007757	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136007195:136007757:+	0	+
#Deleted in new
chr2	136008866	136009073	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136008866:136009073:+	0	+
#Deleted in new
chr2	136008871	136009073	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136008871:136009073:+	0	+
#Deleted in new
chr2	136008902	136009073	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136008902:136009073:+	0	+
#Deleted in new
chr2	136009042	136009073	ENSG00000231890.7|DARS-AS1|lncRNA|chr2:136009042:136009073:+	0	+
#Partially deleted in new
chr21	36034540	36035960	ENSG00000185917.13|SETD4|pc|chr21:36034540:36035960:-	0	-
#Partially deleted in new
chr21	36034540	36036251	ENSG00000185917.13|SETD4|pc|chr21:36034540:36036251:-	0	-
#Partially deleted in new
chr21	36034541	36035960	ENSG00000185917.13|SETD4|pc|chr21:36034541:36035960:-	0	-
#Partially deleted in new
chr21	36052916	36053620	ENSG00000185917.13|SETD4|pc|chr21:36052916:36053620:-	0	-
#Deleted in new
chr21	36057383	36057477	ENSG00000185917.13|SETD4|pc|chr21:36057383:36057477:-	0	-
#Partially deleted in new
chr21	36058815	36060261	ENSG00000185917.13|SETD4|pc|chr21:36058815:36060261:-	0	-
#Deleted in new
chr21	36059821	36060242	ENSG00000185917.13|SETD4|pc|chr21:36059821:36060242:-	0	-
#Deleted in new
chr21	36060106	36060245	ENSG00000185917.13|SETD4|pc|chr21:36060106:36060245:-	0	-
#Partially deleted in new
chr21	36060346	36060526	ENSG00000185917.13|SETD4|pc|chr21:36060346:36060526:-	0	-
#Partially deleted in new
chr21	36060346	36060550	ENSG00000185917.13|SETD4|pc|chr21:36060346:36060550:-	0	-
#Deleted in new
chr21	36060431	36060621	ENSG00000236677.1|AP000688.4|lncRNA|chr21:36060431:36060621:+	0	+
#Deleted in new
chr21	36063505	36063569	ENSG00000236677.1|AP000688.4|lncRNA|chr21:36063505:36063569:+	0	+
#Deleted in new
chr21	36064216	36064408	ENSG00000236677.1|AP000688.4|lncRNA|chr21:36064216:36064408:+	0	+
#Deleted in new
chr21	36075530	36075602	ENSG00000230212.6|AP000688.1|lncRNA|chr21:36075530:36075602:-	0	-
#Deleted in new
chr2	136077891	136077994	ENSG00000237262.1|AC068492.1|lncRNA|chr2:136077891:136077994:+	0	+
#Deleted in new
chr2	136078147	136078513	ENSG00000237262.1|AC068492.1|lncRNA|chr2:136078147:136078513:+	0	+
#Deleted in new
chr21	36079304	36079389	ENSG00000185917.13|SETD4|pc|chr21:36079304:36079389:-	0	-
#Deleted in new
chr21	36082858	36082899	ENSG00000236119.1|AP000688.3|lncRNA|chr21:36082858:36082899:+	0	+
#Deleted in new
chr21	36090107	36090414	ENSG00000236119.1|AP000688.3|lncRNA|chr21:36090107:36090414:+	0	+
#Deleted in new
chr2	13609055	13609168	ENSG00000229370.1|AC073062.1|lncRNA|chr2:13609055:13609168:+	0	+
#Deleted in new
chr21	36098123	36098259	ENSG00000230212.6|AP000688.1|lncRNA|chr21:36098123:36098259:-	0	-
#Deleted in new
chr21	36104880	36105123	ENSG00000233393.1|AP000688.2|lncRNA|chr21:36104880:36105123:+	0	+
#Deleted in new
chr21	36107597	36109690	ENSG00000233393.1|AP000688.2|lncRNA|chr21:36107597:36109690:+	0	+
#Deleted in new
chr21	36126486	36126640	ENSG00000230212.6|AP000688.1|lncRNA|chr21:36126486:36126640:-	0	-
#Deleted in new
chr21	36133686	36133761	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36133686:36133761:-	0	-
#Deleted in new
chr21	36133686	36134006	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36133686:36134006:-	0	-
#Deleted in new
chr21	36137093	36137176	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36137093:36137176:-	0	-
#Deleted in new
chr21	36137093	36137215	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36137093:36137215:-	0	-
#Deleted in new
chr21	36137093	36137229	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36137093:36137229:-	0	-
#Deleted in new
chr21	36137093	36137308	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36137093:36137308:-	0	-
#Deleted in new
chr21	36137093	36137385	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36137093:36137385:-	0	-
#Deleted in new
chr21	36137093	36137391	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36137093:36137391:-	0	-
#Deleted in new
chr21	36138294	36138464	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36138294:36138464:-	0	-
#Deleted in new
chr21	36138448	36138868	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36138448:36138868:-	0	-
#Deleted in new
chr21	36144978	36145076	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36144978:36145076:-	0	-
#Partially deleted in new
chr21	36146255	36147625	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36146255:36147625:-	0	-
#Partially deleted in new
chr21	36147969	36150710	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36147969:36150710:-	0	-
#Deleted in new
chr21	36156216	36156268	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36156216:36156268:-	0	-
#Deleted in new
chr21	36156216	36156295	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36156216:36156295:-	0	-
#Deleted in new
chr21	36156216	36156306	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36156216:36156306:-	0	-
#Deleted in new
chr21	36156216	36156307	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36156216:36156307:-	0	-
#Deleted in new
chr21	36156216	36156317	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36156216:36156317:-	0	-
#Partially deleted in new
chr21	36156216	36156336	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36156216:36156336:-	0	-
#Deleted in new
chr21	36170470	36170568	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36170470:36170568:-	0	-
#Deleted in new
chr21	36175765	36175815	ENSG00000236830.6|CBR3-AS1|lncRNA|chr21:36175765:36175815:-	0	-
#Partially deleted in new
chr21	36260676	36261915	ENSG00000142197.12|DOPEY2|pc|chr21:36260676:36261915:+	0	+
#Deleted in new
chr21	36347871	36348260	ENSG00000159256.12|MORC3|pc|chr21:36347871:36348260:+	0	+
#Deleted in new
chr21	36360629	36360858	ENSG00000228107.1|AP000692.1|lncRNA|chr21:36360629:36360858:+	0	+
#Deleted in new
chr21	36361673	36362040	ENSG00000228107.1|AP000692.1|lncRNA|chr21:36361673:36362040:+	0	+
#Partially deleted in new
chr21	36361835	36362228	ENSG00000159256.12|MORC3|pc|chr21:36361835:36362228:+	0	+
#Deleted in new
chr21	36377409	36377507	ENSG00000159256.12|MORC3|pc|chr21:36377409:36377507:+	0	+
#Deleted in new
chr21	36380230	36380318	ENSG00000159256.12|MORC3|pc|chr21:36380230:36380318:+	0	+
#Deleted in new
chr21	36380625	36380682	ENSG00000159256.12|MORC3|pc|chr21:36380625:36380682:+	0	+
#Deleted in new
chr21	36382018	36382155	ENSG00000159256.12|MORC3|pc|chr21:36382018:36382155:+	0	+
#Deleted in new
chr21	36384186	36384210	ENSG00000159256.12|MORC3|pc|chr21:36384186:36384210:+	0	+
#Deleted in new
chr21	36384729	36384829	ENSG00000159256.12|MORC3|pc|chr21:36384729:36384829:+	0	+
#Deleted in new
chr21	36397742	36398239	ENSG00000159259.7|CHAF1B|pc|chr21:36397742:36398239:+	0	+
#Partially deleted in new
chr21	36416274	36419015	ENSG00000159259.7|CHAF1B|pc|chr21:36416274:36419015:+	0	+
#Deleted in new
chr21	36430359	36430412	ENSG00000230479.1|AP000695.1|lncRNA|chr21:36430359:36430412:+	0	+
#Deleted in new
chr21	36445730	36446007	ENSG00000233818.1|AP000695.2|lncRNA|chr21:36445730:36446007:+	0	+
#Deleted in new
chr21	36445821	36446007	ENSG00000233818.1|AP000695.2|lncRNA|chr21:36445821:36446007:+	0	+
#Deleted in new
chr21	36466366	36466441	ENSG00000159261.10|CLDN14|pc|chr21:36466366:36466441:-	0	-
#Partially deleted in new
chr21	36480230	36481070	ENSG00000230479.1|AP000695.1|lncRNA|chr21:36480230:36481070:+	0	+
#Partially deleted in new
chr21	36526279	36526527	ENSG00000159261.10|CLDN14|pc|chr21:36526279:36526527:-	0	-
#Deleted in new
chr21	36632680	36633570	ENSG00000231324.1|AP000696.1|lncRNA|chr21:36632680:36633570:-	0	-
#Deleted in new
chr21	36636790	36637033	ENSG00000231324.1|AP000696.1|lncRNA|chr21:36636790:36637033:-	0	-
#Deleted in new
chr21	36745794	36745871	ENSG00000159263.15|SIM2|pc|chr21:36745794:36745871:+	0	+
#Deleted in new
chr21	36803983	36804265	ENSG00000237646.1|HLCS-IT1|lncRNA|chr21:36803983:36804265:-	0	-
#Deleted in new
chr2	136906447	136906566	ENSG00000144229.11|THSD7B|pc|chr2:136906447:136906566:+	0	+
#Deleted in new
chr21	36946008	36946154	ENSG00000159267.14|HLCS|pc|chr21:36946008:36946154:-	0	-
#Deleted in new
chr21	36948165	36948287	ENSG00000159267.14|HLCS|pc|chr21:36948165:36948287:-	0	-
#Deleted in new
chr21	36968553	36968807	ENSG00000224790.2|AP000704.1|lncRNA|chr21:36968553:36968807:+	0	+
#Deleted in new
chr21	36969600	36969620	ENSG00000224790.2|AP000704.1|lncRNA|chr21:36969600:36969620:+	0	+
#Deleted in new
chr21	36971764	36971828	ENSG00000224790.2|AP000704.1|lncRNA|chr21:36971764:36971828:+	0	+
#Deleted in new
chr21	36972006	36972249	ENSG00000224790.2|AP000704.1|lncRNA|chr21:36972006:36972249:+	0	+
#Deleted in new
chr21	36973599	36975164	ENSG00000224790.2|AP000704.1|lncRNA|chr21:36973599:36975164:+	0	+
#Deleted in new
chr21	36990157	36990224	ENSG00000159267.14|HLCS|pc|chr21:36990157:36990224:-	0	-
#Deleted in new
chr21	36990157	36990236	ENSG00000159267.14|HLCS|pc|chr21:36990157:36990236:-	0	-
#Deleted in new
chr21	37006149	37006233	ENSG00000183145.8|RIPPLY3|pc|chr21:37006149:37006233:+	0	+
#Deleted in new
chr21	37006201	37006233	ENSG00000183145.8|RIPPLY3|pc|chr21:37006201:37006233:+	0	+
#Partially deleted in new
chr21	37062845	37065712	ENSG00000185808.13|PIGP|pc|chr21:37062845:37065712:-	0	-
#Deleted in new
chr21	37093308	37093402	ENSG00000182670.13|TTC3|pc|chr21:37093308:37093402:+	0	+
#Deleted in new
chr2	13710530	13710721	ENSG00000230448.5|LINC00276|lncRNA|chr2:13710530:13710721:-	0	-
#Deleted in new
chr21	37157160	37157214	ENSG00000182670.13|TTC3|pc|chr21:37157160:37157214:+	0	+
#Deleted in new
chr21	37158130	37158203	ENSG00000182670.13|TTC3|pc|chr21:37158130:37158203:+	0	+
#Deleted in new
chr21	37193807	37193926	ENSG00000228677.1|TTC3-AS1|lncRNA|chr21:37193807:37193926:-	0	-
#Deleted in new
chr21	37194452	37194698	ENSG00000182670.13|TTC3|pc|chr21:37194452:37194698:+	0	+
#Deleted in new
chr21	37194965	37195017	ENSG00000182670.13|TTC3|pc|chr21:37194965:37195017:+	0	+
#Partially deleted in new
chr21	37208502	37208544	ENSG00000230366.9|DSCR9|lncRNA|chr21:37208502:37208544:+	0	+
#Deleted in new
chr21	37210004	37210114	ENSG00000230366.9|DSCR9|lncRNA|chr21:37210004:37210114:+	0	+
#Deleted in new
chr21	37214095	37214153	ENSG00000230366.9|DSCR9|lncRNA|chr21:37214095:37214153:+	0	+
#Deleted in new
chr21	37216404	37216493	ENSG00000230366.9|DSCR9|lncRNA|chr21:37216404:37216493:+	0	+
#Deleted in new
chr21	37220237	37220695	ENSG00000230366.9|DSCR9|lncRNA|chr21:37220237:37220695:+	0	+
#Deleted in new
chr21	37220237	37220696	ENSG00000230366.9|DSCR9|lncRNA|chr21:37220237:37220696:+	0	+
#Deleted in new
chr21	37220237	37220697	ENSG00000230366.9|DSCR9|lncRNA|chr21:37220237:37220697:+	0	+
#Deleted in new
chr21	37220237	37221736	ENSG00000230366.9|DSCR9|lncRNA|chr21:37220237:37221736:+	0	+
#Deleted in new
chr21	37220560	37220688	ENSG00000230366.9|DSCR9|lncRNA|chr21:37220560:37220688:+	0	+
#Deleted in new
chr21	37221418	37221597	ENSG00000242553.1|AP001432.1|lncRNA|chr21:37221418:37221597:+	0	+
#Deleted in new
chr2	13723047	13723192	ENSG00000227718.1|AC016730.1|lncRNA|chr2:13723047:13723192:+	0	+
#Deleted in new
chr21	37230517	37230818	ENSG00000157538.13|DSCR3|pc|chr21:37230517:37230818:-	0	-
#Deleted in new
chr21	37231492	37231590	ENSG00000157538.13|DSCR3|pc|chr21:37231492:37231590:-	0	-
#Partially deleted in new
chr21	37231492	37231975	ENSG00000157538.13|DSCR3|pc|chr21:37231492:37231975:-	0	-
#Partially deleted in new
chr21	37237403	37237744	ENSG00000242553.1|AP001432.1|lncRNA|chr21:37237403:37237744:+	0	+
#Deleted in new
chr21	37266791	37266847	ENSG00000157538.13|DSCR3|pc|chr21:37266791:37266847:-	0	-
#Partially deleted in new
chr21	37266791	37267153	ENSG00000157538.13|DSCR3|pc|chr21:37266791:37267153:-	0	-
#Deleted in new
chr2	13726833	13726926	ENSG00000227718.1|AC016730.1|lncRNA|chr2:13726833:13726926:+	0	+
#Deleted in new
chr2	13739186	13739284	ENSG00000230448.5|LINC00276|lncRNA|chr2:13739186:13739284:-	0	-
#Deleted in new
chr21	37410569	37410670	ENSG00000157540.19|DYRK1A|pc|chr21:37410569:37410670:+	0	+
#Deleted in new
chr21	37415489	37415565	ENSG00000157540.19|DYRK1A|pc|chr21:37415489:37415565:+	0	+
#Deleted in new
chr2	1374222	1374402	ENSG00000115705.20|TPO|pc|chr2:1374222:1374402:+	0	+
#Deleted in new
chr21	37951424	37951702	ENSG00000184029.9|DSCR4|pc|chr21:37951424:37951702:-	0	-
#Deleted in new
chr2	137967096	137967386	ENSG00000150540.13|HNMT|pc|chr2:137967096:137967386:+	0	+
#Deleted in new
chr2	137967096	137967444	ENSG00000150540.13|HNMT|pc|chr2:137967096:137967444:+	0	+
#Deleted in new
chr2	137967510	137967641	ENSG00000150540.13|HNMT|pc|chr2:137967510:137967641:+	0	+
#Deleted in new
chr2	137981215	137981678	ENSG00000150540.13|HNMT|pc|chr2:137981215:137981678:+	0	+
#Deleted in new
chr2	137988564	137988735	ENSG00000150540.13|HNMT|pc|chr2:137988564:137988735:+	0	+
#Deleted in new
chr2	137991815	137991934	ENSG00000150540.13|HNMT|pc|chr2:137991815:137991934:+	0	+
#Partially deleted in new
chr21	38010477	38010618	ENSG00000223608.1|DSCR4-IT1|lncRNA|chr21:38010477:38010618:-	0	-
#Deleted in new
chr21	38094757	38094840	ENSG00000184029.9|DSCR4|pc|chr21:38094757:38094840:-	0	-
#Deleted in new
chr2	138101883	138101921	ENSG00000224231.1|LINC01832|lncRNA|chr2:138101883:138101921:+	0	+
#Deleted in new
chr2	138104134	138104220	ENSG00000224231.1|LINC01832|lncRNA|chr2:138104134:138104220:+	0	+
#Deleted in new
chr21	38120306	38120408	ENSG00000184029.9|DSCR4|pc|chr21:38120306:38120408:-	0	-
#Deleted in new
chr21	38121127	38121331	ENSG00000184029.9|DSCR4|pc|chr21:38121127:38121331:-	0	-
#Deleted in new
chr21	38121127	38121339	ENSG00000184029.9|DSCR4|pc|chr21:38121127:38121339:-	0	-
#Deleted in new
chr21	38121127	38121360	ENSG00000184029.9|DSCR4|pc|chr21:38121127:38121360:-	0	-
#Deleted in new
chr21	38121450	38121601	ENSG00000198054.11|DSCR8|pc|chr21:38121450:38121601:+	0	+
#Deleted in new
chr21	38121472	38121601	ENSG00000198054.11|DSCR8|pc|chr21:38121472:38121601:+	0	+
#Deleted in new
chr21	38122311	38122411	ENSG00000198054.11|DSCR8|pc|chr21:38122311:38122411:+	0	+
#Partially deleted in new
chr21	38122311	38122483	ENSG00000198054.11|DSCR8|pc|chr21:38122311:38122483:+	0	+
#Deleted in new
chr21	38122331	38122411	ENSG00000198054.11|DSCR8|pc|chr21:38122331:38122411:+	0	+
#Deleted in new
chr21	38154414	38154529	ENSG00000198054.11|DSCR8|pc|chr21:38154414:38154529:+	0	+
#Deleted in new
chr21	38154432	38154529	ENSG00000198054.11|DSCR8|pc|chr21:38154432:38154529:+	0	+
#Partially deleted in new
chr21	38155548	38155852	ENSG00000198054.11|DSCR8|pc|chr21:38155548:38155852:+	0	+
#Deleted in new
chr21	38187931	38188016	ENSG00000198054.11|DSCR8|pc|chr21:38187931:38188016:+	0	+
#Deleted in new
chr21	38206155	38206360	ENSG00000233316.4|DSCR10|lncRNA|chr21:38206155:38206360:+	0	+
#Deleted in new
chr21	38237216	38237414	ENSG00000226012.1|AP001434.1|lncRNA|chr21:38237216:38237414:-	0	-
#Deleted in new
chr21	38267298	38267342	ENSG00000157551.17|KCNJ15|pc|chr21:38267298:38267342:+	0	+
#Deleted in new
chr21	38272249	38272557	ENSG00000157551.17|KCNJ15|pc|chr21:38272249:38272557:+	0	+
#Deleted in new
chr21	38272294	38272557	ENSG00000157551.17|KCNJ15|pc|chr21:38272294:38272557:+	0	+
#Deleted in new
chr21	38272419	38272557	ENSG00000157551.17|KCNJ15|pc|chr21:38272419:38272557:+	0	+
#Deleted in new
chr21	38272422	38272557	ENSG00000157551.17|KCNJ15|pc|chr21:38272422:38272557:+	0	+
#Deleted in new
chr21	38323634	38323898	ENSG00000231231.5|LINC01423|lncRNA|chr21:38323634:38323898:-	0	-
#Deleted in new
chr21	38325782	38325954	ENSG00000231231.5|LINC01423|lncRNA|chr21:38325782:38325954:-	0	-
#Deleted in new
chr21	38326351	38326545	ENSG00000231231.5|LINC01423|lncRNA|chr21:38326351:38326545:-	0	-
#Deleted in new
chr21	38332425	38332477	ENSG00000231231.5|LINC01423|lncRNA|chr21:38332425:38332477:-	0	-
#Deleted in new
chr21	38332961	38333032	ENSG00000231231.5|LINC01423|lncRNA|chr21:38332961:38333032:-	0	-
#Deleted in new
chr2	138418283	138418485	ENSG00000228043.5|AC114763.1|lncRNA|chr2:138418283:138418485:-	0	-
#Deleted in new
chr2	138434374	138434541	ENSG00000228043.5|AC114763.1|lncRNA|chr2:138434374:138434541:-	0	-
#Deleted in new
chr2	138436472	138436613	ENSG00000228043.5|AC114763.1|lncRNA|chr2:138436472:138436613:-	0	-
#Deleted in new
chr2	138446247	138446467	ENSG00000228043.5|AC114763.1|lncRNA|chr2:138446247:138446467:-	0	-
#Deleted in new
chr2	138470655	138470748	ENSG00000230569.1|AC114763.2|lncRNA|chr2:138470655:138470748:+	0	+
#Deleted in new
chr2	138471039	138471331	ENSG00000230569.1|AC114763.2|lncRNA|chr2:138471039:138471331:+	0	+
#Deleted in new
chr2	138473491	138473932	ENSG00000230569.1|AC114763.2|lncRNA|chr2:138473491:138473932:+	0	+
#Deleted in new
chr2	138477169	138477246	ENSG00000228043.5|AC114763.1|lncRNA|chr2:138477169:138477246:-	0	-
#Deleted in new
chr2	138500754	138500880	ENSG00000228043.5|AC114763.1|lncRNA|chr2:138500754:138500880:-	0	-
#Deleted in new
chr2	138501318	138501674	ENSG00000228043.5|AC114763.1|lncRNA|chr2:138501318:138501674:-	0	-
#Deleted in new
chr2	138501318	138501698	ENSG00000228043.5|AC114763.1|lncRNA|chr2:138501318:138501698:-	0	-
#Partially deleted in new
chr2	138573851	138574458	ENSG00000241772.2|AC092620.2|lncRNA|chr2:138573851:138574458:+	0	+
#Deleted in new
chr2	138599662	138602426	ENSG00000260059.1|AC092620.3|lncRNA|chr2:138599662:138602426:-	0	-
#Deleted in new
chr2	138604509	138604559	ENSG00000237772.1|AC092620.1|lncRNA|chr2:138604509:138604559:+	0	+
#Deleted in new
chr2	138612537	138613167	ENSG00000237772.1|AC092620.1|lncRNA|chr2:138612537:138613167:+	0	+
#Deleted in new
chr21	38739020	38739329	ENSG00000223806.7|LINC00114|lncRNA|chr21:38739020:38739329:-	0	-
#Deleted in new
chr21	38740315	38740414	ENSG00000223806.7|LINC00114|lncRNA|chr21:38740315:38740414:-	0	-
#Deleted in new
chr21	38740883	38741068	ENSG00000223806.7|LINC00114|lncRNA|chr21:38740883:38741068:-	0	-
#Deleted in new
chr21	38741320	38741372	ENSG00000223806.7|LINC00114|lncRNA|chr21:38741320:38741372:-	0	-
#Deleted in new
chr21	38741320	38742517	ENSG00000223806.7|LINC00114|lncRNA|chr21:38741320:38742517:-	0	-
#Deleted in new
chr21	38742017	38742053	ENSG00000223806.7|LINC00114|lncRNA|chr21:38742017:38742053:-	0	-
#Deleted in new
chr21	38746298	38746416	ENSG00000223806.7|LINC00114|lncRNA|chr21:38746298:38746416:-	0	-
#Deleted in new
chr21	38747396	38747460	ENSG00000223806.7|LINC00114|lncRNA|chr21:38747396:38747460:-	0	-
#Deleted in new
chr21	38846246	38846317	ENSG00000229986.1|AP001042.1|lncRNA|chr21:38846246:38846317:+	0	+
#Deleted in new
chr21	38848228	38848644	ENSG00000229986.1|AP001042.1|lncRNA|chr21:38848228:38848644:+	0	+
#Deleted in new
chr21	38863675	38864225	ENSG00000205622.9|AP001043.1|lncRNA|chr21:38863675:38864225:-	0	-
#Partially deleted in new
chr21	38876086	38880372	ENSG00000205622.9|AP001043.1|lncRNA|chr21:38876086:38880372:-	0	-
#Deleted in new
chr21	38888771	38888893	ENSG00000229925.1|AP001043.2|lncRNA|chr21:38888771:38888893:+	0	+
#Deleted in new
chr21	38901900	38901965	ENSG00000205622.9|AP001043.1|lncRNA|chr21:38901900:38901965:-	0	-
#Deleted in new
chr21	38908155	38908255	ENSG00000205622.9|AP001043.1|lncRNA|chr21:38908155:38908255:-	0	-
#Deleted in new
chr21	38920741	38920839	ENSG00000205622.9|AP001043.1|lncRNA|chr21:38920741:38920839:-	0	-
#Deleted in new
chr21	38977452	38977567	ENSG00000232837.1|LINC01700|lncRNA|chr21:38977452:38977567:-	0	-
#Deleted in new
chr21	38977710	38977774	ENSG00000232837.1|LINC01700|lncRNA|chr21:38977710:38977774:-	0	-
#Deleted in new
chr21	38988706	38989426	ENSG00000235888.1|AF064858.1|lncRNA|chr21:38988706:38989426:-	0	-
#Deleted in new
chr21	39011087	39011329	ENSG00000237721.1|AF064858.3|lncRNA|chr21:39011087:39011329:-	0	-
#Deleted in new
chr21	39028535	39028699	ENSG00000237609.1|AF064858.2|lncRNA|chr21:39028535:39028699:-	0	-
#Deleted in new
chr21	39029000	39029128	ENSG00000237609.1|AF064858.2|lncRNA|chr21:39029000:39029128:-	0	-
#Deleted in new
chr21	39217092	39217177	ENSG00000237373.1|BRWD1-IT1|lncRNA|chr21:39217092:39217177:-	0	-
#Partially deleted in new
chr21	39313934	39314962	ENSG00000255568.3|BRWD1-AS2|lncRNA|chr21:39313934:39314962:+	0	+
#Deleted in new
chr21	39315706	39315815	ENSG00000238141.2|BRWD1-AS1|lncRNA|chr21:39315706:39315815:+	0	+
#Deleted in new
chr21	39317044	39317209	ENSG00000238141.2|BRWD1-AS1|lncRNA|chr21:39317044:39317209:+	0	+
#Deleted in new
chr21	39321025	39321559	ENSG00000185658.13|BRWD1|pc|chr21:39321025:39321559:-	0	-
#Deleted in new
chr21	39322801	39323218	ENSG00000238141.2|BRWD1-AS1|lncRNA|chr21:39322801:39323218:+	0	+
#Partially deleted in new
chr21	39345145	39348339	ENSG00000205581.10|HMGN1|pc|chr21:39345145:39348339:-	0	-
#Partially deleted in new
chr21	39345829	39347292	ENSG00000205581.10|HMGN1|pc|chr21:39345829:39347292:-	0	-
#Deleted in new
chr21	39347146	39347292	ENSG00000205581.10|HMGN1|pc|chr21:39347146:39347292:-	0	-
#Deleted in new
chr21	39347246	39347292	ENSG00000205581.10|HMGN1|pc|chr21:39347246:39347292:-	0	-
#Deleted in new
chr21	39347335	39347952	ENSG00000205581.10|HMGN1|pc|chr21:39347335:39347952:-	0	-
#Deleted in new
chr21	39347378	39347478	ENSG00000205581.10|HMGN1|pc|chr21:39347378:39347478:-	0	-
#Deleted in new
chr21	39347378	39347483	ENSG00000205581.10|HMGN1|pc|chr21:39347378:39347483:-	0	-
#Deleted in new
chr21	39347491	39347952	ENSG00000205581.10|HMGN1|pc|chr21:39347491:39347952:-	0	-
#Partially deleted in new
chr21	39348064	39348339	ENSG00000205581.10|HMGN1|pc|chr21:39348064:39348339:-	0	-
#Partially deleted in new
chr21	39349459	39349647	ENSG00000205581.10|HMGN1|pc|chr21:39349459:39349647:-	0	-
#Partially deleted in new
chr2	139366164	139366202	ENSG00000226939.1|AC062021.1|lncRNA|chr2:139366164:139366202:+	0	+
#Deleted in new
chr2	139378909	139379147	ENSG00000226939.1|AC062021.1|lncRNA|chr2:139378909:139379147:+	0	+
#Partially deleted in new
chr21	39380486	39380921	ENSG00000182093.14|WRB|pc|chr21:39380486:39380921:+	0	+
#Deleted in new
chr21	39387764	39387855	ENSG00000182093.14|WRB|pc|chr21:39387764:39387855:+	0	+
#Deleted in new
chr21	39387790	39387855	ENSG00000182093.14|WRB|pc|chr21:39387790:39387855:+	0	+
#Partially deleted in new
chr21	39391768	39392046	ENSG00000182093.14|WRB|pc|chr21:39391768:39392046:+	0	+
#Deleted in new
chr21	39425870	39426034	ENSG00000182093.14|WRB|pc|chr21:39425870:39426034:+	0	+
#Deleted in new
chr21	39425918	39426034	ENSG00000182093.14|WRB|pc|chr21:39425918:39426034:+	0	+
#Deleted in new
chr21	39438683	39438718	ENSG00000157578.13|LCA5L|pc|chr21:39438683:39438718:-	0	-
#Deleted in new
chr21	39438683	39438936	ENSG00000157578.13|LCA5L|pc|chr21:39438683:39438936:-	0	-
#Deleted in new
chr21	39439633	39439773	ENSG00000157578.13|LCA5L|pc|chr21:39439633:39439773:-	0	-
#Deleted in new
chr21	39443458	39444201	ENSG00000157578.13|LCA5L|pc|chr21:39443458:39444201:-	0	-
#Deleted in new
chr21	39444134	39444201	ENSG00000157578.13|LCA5L|pc|chr21:39444134:39444201:-	0	-
#Partially deleted in new
chr21	39445874	39446081	ENSG00000185437.13|SH3BGR|pc|chr21:39445874:39446081:+	0	+
#Deleted in new
chr21	39445930	39446098	ENSG00000185437.13|SH3BGR|pc|chr21:39445930:39446098:+	0	+
#Deleted in new
chr21	39445941	39446081	ENSG00000185437.13|SH3BGR|pc|chr21:39445941:39446081:+	0	+
#Deleted in new
chr2	139469774	139469984	ENSG00000229131.1|AC016710.1|lncRNA|chr2:139469774:139469984:+	0	+
#Deleted in new
chr2	139477491	139477747	ENSG00000229131.1|AC016710.1|lncRNA|chr2:139477491:139477747:+	0	+
#Deleted in new
chr21	39508997	39509027	ENSG00000185437.13|SH3BGR|pc|chr21:39508997:39509027:+	0	+
#Deleted in new
chr21	39511679	39511706	ENSG00000185437.13|SH3BGR|pc|chr21:39511679:39511706:+	0	+
#Deleted in new
chr21	39511679	39511775	ENSG00000185437.13|SH3BGR|pc|chr21:39511679:39511775:+	0	+
#Deleted in new
chr21	39511679	39511809	ENSG00000185437.13|SH3BGR|pc|chr21:39511679:39511809:+	0	+
#Deleted in new
chr21	39562953	39563584	ENSG00000183778.17|B3GALT5|pc|chr21:39562953:39563584:+	0	+
#Deleted in new
chr21	39597146	39597989	ENSG00000184809.12|B3GALT5-AS1|lncRNA|chr21:39597146:39597989:-	0	-
#Deleted in new
chr21	39599340	39599656	ENSG00000184809.12|B3GALT5-AS1|lncRNA|chr21:39599340:39599656:-	0	-
#Deleted in new
chr21	39605093	39605225	ENSG00000183778.17|B3GALT5|pc|chr21:39605093:39605225:+	0	+
#Deleted in new
chr21	39605598	39606002	ENSG00000184809.12|B3GALT5-AS1|lncRNA|chr21:39605598:39606002:-	0	-
#Deleted in new
chr21	39646391	39646622	ENSG00000183778.17|B3GALT5|pc|chr21:39646391:39646622:+	0	+
#Deleted in new
chr21	39657326	39657599	ENSG00000183778.17|B3GALT5|pc|chr21:39657326:39657599:+	0	+
#Deleted in new
chr21	39657776	39657893	ENSG00000183778.17|B3GALT5|pc|chr21:39657776:39657893:+	0	+
#Deleted in new
chr21	39657881	39657893	ENSG00000183778.17|B3GALT5|pc|chr21:39657881:39657893:+	0	+
#Deleted in new
chr21	39722475	39722551	ENSG00000225330.1|AF064860.1|lncRNA|chr21:39722475:39722551:+	0	+
#Deleted in new
chr21	39725837	39726085	ENSG00000225330.1|AF064860.1|lncRNA|chr21:39725837:39726085:+	0	+
#Deleted in new
chr21	39727754	39727992	ENSG00000231713.2|AF064860.2|lncRNA|chr21:39727754:39727992:+	0	+
#Deleted in new
chr21	39727845	39727992	ENSG00000231713.2|AF064860.2|lncRNA|chr21:39727845:39727992:+	0	+
#Deleted in new
chr21	39729132	39729259	ENSG00000231713.2|AF064860.2|lncRNA|chr21:39729132:39729259:+	0	+
#Deleted in new
chr21	39729132	39729684	ENSG00000231713.2|AF064860.2|lncRNA|chr21:39729132:39729684:+	0	+
#Deleted in new
chr21	39745406	39745526	ENSG00000183067.5|IGSF5|pc|chr21:39745406:39745526:+	0	+
#Deleted in new
chr21	39746215	39746298	ENSG00000183067.5|IGSF5|pc|chr21:39746215:39746298:+	0	+
#Deleted in new
chr2	140103582	140103770	ENSG00000224028.1|LINC01853|lncRNA|chr2:140103582:140103770:-	0	-
#Deleted in new
chr2	140114041	140114104	ENSG00000224028.1|LINC01853|lncRNA|chr2:140114041:140114104:-	0	-
#Deleted in new
chr2	140116390	140116444	ENSG00000224028.1|LINC01853|lncRNA|chr2:140116390:140116444:-	0	-
#Deleted in new
chr2	140131641	140131780	ENSG00000224028.1|LINC01853|lncRNA|chr2:140131641:140131780:-	0	-
#Deleted in new
chr21	40383082	40383408	ENSG00000235123.5|DSCAM-AS1|lncRNA|chr21:40383082:40383408:+	0	+
#Deleted in new
chr21	40383082	40383455	ENSG00000235123.5|DSCAM-AS1|lncRNA|chr21:40383082:40383455:+	0	+
#Deleted in new
chr21	40383082	40383584	ENSG00000235123.5|DSCAM-AS1|lncRNA|chr21:40383082:40383584:+	0	+
#Deleted in new
chr21	40383505	40383584	ENSG00000235123.5|DSCAM-AS1|lncRNA|chr21:40383505:40383584:+	0	+
#Deleted in new
chr21	40383651	40384138	ENSG00000235123.5|DSCAM-AS1|lncRNA|chr21:40383651:40384138:+	0	+
#Deleted in new
chr21	40384578	40385358	ENSG00000235123.5|DSCAM-AS1|lncRNA|chr21:40384578:40385358:+	0	+
#Deleted in new
chr21	40615377	40615483	ENSG00000233756.5|DSCAM-IT1|lncRNA|chr21:40615377:40615483:-	0	-
#Partially deleted in new
chr21	40618506	40618868	ENSG00000233756.5|DSCAM-IT1|lncRNA|chr21:40618506:40618868:-	0	-
#Deleted in new
chr21	40621254	40621400	ENSG00000233756.5|DSCAM-IT1|lncRNA|chr21:40621254:40621400:-	0	-
#Deleted in new
chr21	40629539	40629641	ENSG00000233756.5|DSCAM-IT1|lncRNA|chr21:40629539:40629641:-	0	-
#Deleted in new
chr21	40630657	40630767	ENSG00000233756.5|DSCAM-IT1|lncRNA|chr21:40630657:40630767:-	0	-
#Partially deleted in new
chr21	41143141	41143415	ENSG00000226496.2|LINC00323|lncRNA|chr21:41143141:41143415:-	0	-
#Partially deleted in new
chr21	41143179	41143415	ENSG00000226496.2|LINC00323|lncRNA|chr21:41143179:41143415:-	0	-
#Deleted in new
chr21	41180096	41180284	ENSG00000224388.1|BACE2-IT1|lncRNA|chr21:41180096:41180284:+	0	+
#Deleted in new
chr21	41180432	41180626	ENSG00000224388.1|BACE2-IT1|lncRNA|chr21:41180432:41180626:+	0	+
#Deleted in new
chr21	41180471	41180573	ENSG00000225745.8|AL773572.1|lncRNA|chr21:41180471:41180573:-	0	-
#Deleted in new
chr21	41180531	41180573	ENSG00000225745.8|AL773572.1|lncRNA|chr21:41180531:41180573:-	0	-
#Deleted in new
chr21	41182149	41182245	ENSG00000225745.8|AL773572.1|lncRNA|chr21:41182149:41182245:-	0	-
#Deleted in new
chr21	41186122	41186320	ENSG00000225745.8|AL773572.1|lncRNA|chr21:41186122:41186320:-	0	-
#Deleted in new
chr21	41186122	41186342	ENSG00000225745.8|AL773572.1|lncRNA|chr21:41186122:41186342:-	0	-
#Deleted in new
chr21	41186447	41186773	ENSG00000225745.8|AL773572.1|lncRNA|chr21:41186447:41186773:-	0	-
#Deleted in new
chr21	41186447	41186788	ENSG00000225745.8|AL773572.1|lncRNA|chr21:41186447:41186788:-	0	-
#Partially deleted in new
chr21	41225475	41225695	ENSG00000182240.15|BACE2|pc|chr21:41225475:41225695:+	0	+
#Deleted in new
chr21	41230117	41230223	ENSG00000182240.15|BACE2|pc|chr21:41230117:41230223:+	0	+
#Deleted in new
chr21	41252464	41252524	ENSG00000182240.15|BACE2|pc|chr21:41252464:41252524:+	0	+
#Deleted in new
chr21	41304211	41304310	ENSG00000183844.16|FAM3B|pc|chr21:41304211:41304310:+	0	+
#Deleted in new
chr21	41304249	41304310	ENSG00000183844.16|FAM3B|pc|chr21:41304249:41304310:+	0	+
#Deleted in new
chr21	41322587	41322704	ENSG00000183844.16|FAM3B|pc|chr21:41322587:41322704:+	0	+
#Partially deleted in new
chr21	41345685	41346349	ENSG00000183844.16|FAM3B|pc|chr21:41345685:41346349:+	0	+
#Deleted in new
chr21	41346208	41346407	ENSG00000183844.16|FAM3B|pc|chr21:41346208:41346407:+	0	+
#Deleted in new
chr21	41361942	41362055	ENSG00000183486.12|MX2|pc|chr21:41361942:41362055:+	0	+
#Deleted in new
chr21	41361998	41362055	ENSG00000183486.12|MX2|pc|chr21:41361998:41362055:+	0	+
#Deleted in new
chr21	41362006	41362055	ENSG00000183486.12|MX2|pc|chr21:41362006:41362055:+	0	+
#Deleted in new
chr21	41362026	41362055	ENSG00000183486.12|MX2|pc|chr21:41362026:41362055:+	0	+
#Deleted in new
chr21	41362029	41362055	ENSG00000183486.12|MX2|pc|chr21:41362029:41362055:+	0	+
#Deleted in new
chr21	41363268	41363389	ENSG00000183486.12|MX2|pc|chr21:41363268:41363389:+	0	+
#Deleted in new
chr21	41363268	41363416	ENSG00000183486.12|MX2|pc|chr21:41363268:41363416:+	0	+
#Deleted in new
chr21	41363268	41367306	ENSG00000183486.12|MX2|pc|chr21:41363268:41367306:+	0	+
#Deleted in new
chr21	41364403	41364666	ENSG00000183486.12|MX2|pc|chr21:41364403:41364666:+	0	+
#Deleted in new
chr21	41370212	41370645	ENSG00000183486.12|MX2|pc|chr21:41370212:41370645:+	0	+
#Deleted in new
chr21	41370513	41370645	ENSG00000183486.12|MX2|pc|chr21:41370513:41370645:+	0	+
#Deleted in new
chr21	41372933	41372999	ENSG00000183486.12|MX2|pc|chr21:41372933:41372999:+	0	+
#Deleted in new
chr21	41373897	41374127	ENSG00000183486.12|MX2|pc|chr21:41373897:41374127:+	0	+
#Deleted in new
chr21	41376835	41376949	ENSG00000183486.12|MX2|pc|chr21:41376835:41376949:+	0	+
#Deleted in new
chr21	41376835	41377155	ENSG00000183486.12|MX2|pc|chr21:41376835:41377155:+	0	+
#Partially deleted in new
chr21	41389542	41390703	ENSG00000183486.12|MX2|pc|chr21:41389542:41390703:+	0	+
#Partially deleted in new
chr21	41399195	41399766	ENSG00000183486.12|MX2|pc|chr21:41399195:41399766:+	0	+
#Partially deleted in new
chr21	41400864	41402128	ENSG00000183486.12|MX2|pc|chr21:41400864:41402128:+	0	+
#Partially deleted in new
chr21	41402633	41403636	ENSG00000183486.12|MX2|pc|chr21:41402633:41403636:+	0	+
#Partially deleted in new
chr21	41403266	41404873	ENSG00000183486.12|MX2|pc|chr21:41403266:41404873:+	0	+
#Partially deleted in new
chr21	41407990	41408943	ENSG00000183486.12|MX2|pc|chr21:41407990:41408943:+	0	+
#Partially deleted in new
chr21	41407990	41409390	ENSG00000183486.12|MX2|pc|chr21:41407990:41409390:+	0	+
#Deleted in new
chr21	41420303	41420440	ENSG00000157601.13|MX1|pc|chr21:41420303:41420440:+	0	+
#Deleted in new
chr21	41420365	41420440	ENSG00000157601.13|MX1|pc|chr21:41420365:41420440:+	0	+
#Deleted in new
chr21	41420514	41420817	ENSG00000157601.13|MX1|pc|chr21:41420514:41420817:+	0	+
#Deleted in new
chr21	41421328	41421373	ENSG00000157601.13|MX1|pc|chr21:41421328:41421373:+	0	+
#Deleted in new
chr21	41421837	41421871	ENSG00000157601.13|MX1|pc|chr21:41421837:41421871:+	0	+
#Deleted in new
chr21	41421837	41422095	ENSG00000157601.13|MX1|pc|chr21:41421837:41422095:+	0	+
#Deleted in new
chr21	41421974	41422095	ENSG00000157601.13|MX1|pc|chr21:41421974:41422095:+	0	+
#Deleted in new
chr21	41422755	41422911	ENSG00000157601.13|MX1|pc|chr21:41422755:41422911:+	0	+
#Deleted in new
chr21	41422755	41423277	ENSG00000157601.13|MX1|pc|chr21:41422755:41423277:+	0	+
#Deleted in new
chr21	41426030	41426161	ENSG00000157601.13|MX1|pc|chr21:41426030:41426161:+	0	+
#Deleted in new
chr21	41426030	41426263	ENSG00000157601.13|MX1|pc|chr21:41426030:41426263:+	0	+
#Deleted in new
chr21	41426166	41426263	ENSG00000157601.13|MX1|pc|chr21:41426166:41426263:+	0	+
#Deleted in new
chr21	41426177	41426263	ENSG00000157601.13|MX1|pc|chr21:41426177:41426263:+	0	+
#Deleted in new
chr21	41426191	41426263	ENSG00000157601.13|MX1|pc|chr21:41426191:41426263:+	0	+
#Deleted in new
chr21	41426204	41426263	ENSG00000157601.13|MX1|pc|chr21:41426204:41426263:+	0	+
#Deleted in new
chr21	41426240	41426263	ENSG00000157601.13|MX1|pc|chr21:41426240:41426263:+	0	+
#Deleted in new
chr21	41426269	41427304	ENSG00000157601.13|MX1|pc|chr21:41426269:41427304:+	0	+
#Deleted in new
chr21	41427205	41427304	ENSG00000157601.13|MX1|pc|chr21:41427205:41427304:+	0	+
#Deleted in new
chr21	41427754	41427866	ENSG00000157601.13|MX1|pc|chr21:41427754:41427866:+	0	+
#Deleted in new
chr21	41427754	41428070	ENSG00000157601.13|MX1|pc|chr21:41427754:41428070:+	0	+
#Deleted in new
chr21	41427754	41429921	ENSG00000157601.13|MX1|pc|chr21:41427754:41429921:+	0	+
#Deleted in new
chr21	41429480	41429559	ENSG00000157601.13|MX1|pc|chr21:41429480:41429559:+	0	+
#Deleted in new
chr21	41430532	41430608	ENSG00000157601.13|MX1|pc|chr21:41430532:41430608:+	0	+
#Deleted in new
chr21	41431713	41432175	ENSG00000157601.13|MX1|pc|chr21:41431713:41432175:+	0	+
#Deleted in new
chr21	41432030	41432175	ENSG00000157601.13|MX1|pc|chr21:41432030:41432175:+	0	+
#Deleted in new
chr21	41432049	41432147	ENSG00000157601.13|MX1|pc|chr21:41432049:41432147:+	0	+
#Deleted in new
chr21	41432049	41432175	ENSG00000157601.13|MX1|pc|chr21:41432049:41432175:+	0	+
#Deleted in new
chr21	41442664	41442746	ENSG00000228318.3|AP001610.1|lncRNA|chr21:41442664:41442746:-	0	-
#Deleted in new
chr21	41486466	41488025	ENSG00000184012.11|TMPRSS2|pc|chr21:41486466:41488025:-	0	-
#Deleted in new
chr21	41529788	41530218	ENSG00000184012.11|TMPRSS2|pc|chr21:41529788:41530218:-	0	-
#Deleted in new
chr21	41529972	41530218	ENSG00000184012.11|TMPRSS2|pc|chr21:41529972:41530218:-	0	-
#Deleted in new
chr21	41530984	41531098	ENSG00000184012.11|TMPRSS2|pc|chr21:41530984:41531098:-	0	-
#Deleted in new
chr21	41530984	41531116	ENSG00000184012.11|TMPRSS2|pc|chr21:41530984:41531116:-	0	-
#Deleted in new
chr21	41562906	41562958	ENSG00000232806.1|AP001610.2|lncRNA|chr21:41562906:41562958:-	0	-
#Deleted in new
chr21	41576134	41576425	ENSG00000223400.1|AP006748.1|lncRNA|chr21:41576134:41576425:-	0	-
#Deleted in new
chr21	41581264	41581319	ENSG00000223400.1|AP006748.1|lncRNA|chr21:41581264:41581319:-	0	-
#Deleted in new
chr21	41688322	41688468	ENSG00000227702.1|LINC00111|lncRNA|chr21:41688322:41688468:+	0	+
#Deleted in new
chr21	41697237	41697336	ENSG00000227702.1|LINC00111|lncRNA|chr21:41697237:41697336:+	0	+
#Deleted in new
chr21	41711519	41713000	ENSG00000236384.7|LINC00479|lncRNA|chr21:41711519:41713000:-	0	-
#Deleted in new
chr21	41712156	41712373	ENSG00000236384.7|LINC00479|lncRNA|chr21:41712156:41712373:-	0	-
#Deleted in new
chr21	41712815	41713000	ENSG00000236384.7|LINC00479|lncRNA|chr21:41712815:41713000:-	0	-
#Deleted in new
chr21	41712855	41712971	ENSG00000236384.7|LINC00479|lncRNA|chr21:41712855:41712971:-	0	-
#Deleted in new
chr21	41712855	41713000	ENSG00000236384.7|LINC00479|lncRNA|chr21:41712855:41713000:-	0	-
#Deleted in new
chr21	41713550	41713672	ENSG00000236384.7|LINC00479|lncRNA|chr21:41713550:41713672:-	0	-
#Deleted in new
chr21	41713855	41713936	ENSG00000236384.7|LINC00479|lncRNA|chr21:41713855:41713936:-	0	-
#Deleted in new
chr21	41714019	41714055	ENSG00000236384.7|LINC00479|lncRNA|chr21:41714019:41714055:-	0	-
#Deleted in new
chr21	41714019	41714132	ENSG00000236384.7|LINC00479|lncRNA|chr21:41714019:41714132:-	0	-
#Deleted in new
chr21	41714233	41714314	ENSG00000236384.7|LINC00479|lncRNA|chr21:41714233:41714314:-	0	-
#Deleted in new
chr21	41714233	41714352	ENSG00000236384.7|LINC00479|lncRNA|chr21:41714233:41714352:-	0	-
#Deleted in new
chr21	41715119	41715283	ENSG00000236384.7|LINC00479|lncRNA|chr21:41715119:41715283:-	0	-
#Deleted in new
chr21	41716435	41716544	ENSG00000232401.1|LINC00112|lncRNA|chr21:41716435:41716544:+	0	+
#Deleted in new
chr21	41717000	41717174	ENSG00000232401.1|LINC00112|lncRNA|chr21:41717000:41717174:+	0	+
#Deleted in new
chr21	41717341	41717580	ENSG00000232401.1|LINC00112|lncRNA|chr21:41717341:41717580:+	0	+
#Partially deleted in new
chr21	41810153	41814962	ENSG00000141956.13|PRDM15|pc|chr21:41810153:41814962:-	0	-
#Deleted in new
chr21	41834504	41834564	ENSG00000141956.13|PRDM15|pc|chr21:41834504:41834564:-	0	-
#Deleted in new
chr21	41863234	41863302	ENSG00000141956.13|PRDM15|pc|chr21:41863234:41863302:-	0	-
#Deleted in new
chr21	41867299	41867377	ENSG00000141956.13|PRDM15|pc|chr21:41867299:41867377:-	0	-
#Deleted in new
chr21	41871493	41871621	ENSG00000141956.13|PRDM15|pc|chr21:41871493:41871621:-	0	-
#Deleted in new
chr21	41871734	41872054	ENSG00000236545.1|AP001619.2|lncRNA|chr21:41871734:41872054:+	0	+
#Deleted in new
chr21	41874755	41875034	ENSG00000227698.1|AP001619.1|lncRNA|chr21:41874755:41875034:-	0	-
#Partially deleted in new
chr21	41912331	41912440	ENSG00000157617.16|C2CD2|pc|chr21:41912331:41912440:-	0	-
#Deleted in new
chr21	41926571	41926672	ENSG00000157617.16|C2CD2|pc|chr21:41926571:41926672:-	0	-
#Deleted in new
chr21	41926571	41926690	ENSG00000157617.16|C2CD2|pc|chr21:41926571:41926690:-	0	-
#Deleted in new
chr21	42022022	42022211	ENSG00000237232.7|ZNF295-AS1|lncRNA|chr21:42022022:42022211:+	0	+
#Deleted in new
chr21	42022266	42022430	ENSG00000237232.7|ZNF295-AS1|lncRNA|chr21:42022266:42022430:+	0	+
#Deleted in new
chr21	42024305	42024866	ENSG00000237232.7|ZNF295-AS1|lncRNA|chr21:42024305:42024866:+	0	+
#Deleted in new
chr21	42024305	42024924	ENSG00000237232.7|ZNF295-AS1|lncRNA|chr21:42024305:42024924:+	0	+
#Deleted in new
chr21	42062958	42063214	ENSG00000177398.18|UMODL1|pc|chr21:42062958:42063214:+	0	+
#Deleted in new
chr21	42093403	42093522	ENSG00000177398.18|UMODL1|pc|chr21:42093403:42093522:+	0	+
#Deleted in new
chr21	42093870	42094024	ENSG00000177398.18|UMODL1|pc|chr21:42093870:42094024:+	0	+
#Deleted in new
chr21	42108295	42108534	ENSG00000184385.2|UMODL1-AS1|lncRNA|chr21:42108295:42108534:-	0	-
#Deleted in new
chr21	42128003	42128145	ENSG00000177398.18|UMODL1|pc|chr21:42128003:42128145:+	0	+
#Deleted in new
chr21	42201576	42201723	ENSG00000160179.18|ABCG1|pc|chr21:42201576:42201723:+	0	+
#Deleted in new
chr21	42206945	42206986	ENSG00000160179.18|ABCG1|pc|chr21:42206945:42206986:+	0	+
#Deleted in new
chr21	42216076	42216188	ENSG00000160179.18|ABCG1|pc|chr21:42216076:42216188:+	0	+
#Deleted in new
chr21	42256083	42256616	ENSG00000160179.18|ABCG1|pc|chr21:42256083:42256616:+	0	+
#Deleted in new
chr21	42259314	42259502	ENSG00000160179.18|ABCG1|pc|chr21:42259314:42259502:+	0	+
#Deleted in new
chr21	42259988	42260139	ENSG00000160179.18|ABCG1|pc|chr21:42259988:42260139:+	0	+
#Partially deleted in new
chr2	14228873	14232064	ENSG00000230448.5|LINC00276|lncRNA|chr2:14228873:14232064:-	0	-
#Deleted in new
chr21	42350266	42350359	ENSG00000160181.8|TFF2|pc|chr21:42350266:42350359:-	0	-
#Deleted in new
chr2	14235889	14235950	ENSG00000230448.5|LINC00276|lncRNA|chr2:14235889:14235950:-	0	-
#Deleted in new
chr21	42413409	42413523	ENSG00000160185.14|UBASH3A|pc|chr21:42413409:42413523:+	0	+
#Partially deleted in new
chr21	42472485	42472870	ENSG00000160188.9|RSPH1|pc|chr21:42472485:42472870:-	0	-
#Deleted in new
chr21	42475897	42476047	ENSG00000160188.9|RSPH1|pc|chr21:42475897:42476047:-	0	-
#Deleted in new
chr21	42496538	42496665	ENSG00000239930.2|AP001625.3|lncRNA|chr21:42496538:42496665:+	0	+
#Deleted in new
chr21	42496822	42496933	ENSG00000239930.2|AP001625.3|lncRNA|chr21:42496822:42496933:+	0	+
#Deleted in new
chr21	42496822	42498203	ENSG00000160190.13|SLC37A1|pc|chr21:42496822:42498203:+	0	+
#Deleted in new
chr21	42497232	42497443	ENSG00000239930.2|AP001625.3|lncRNA|chr21:42497232:42497443:+	0	+
#Deleted in new
chr21	42499631	42499743	ENSG00000160190.13|SLC37A1|pc|chr21:42499631:42499743:+	0	+
#Deleted in new
chr21	42499706	42499743	ENSG00000160190.13|SLC37A1|pc|chr21:42499706:42499743:+	0	+
#Deleted in new
chr21	42502295	42502417	ENSG00000160190.13|SLC37A1|pc|chr21:42502295:42502417:+	0	+
#Deleted in new
chr21	42502688	42502974	ENSG00000160190.13|SLC37A1|pc|chr21:42502688:42502974:+	0	+
#Deleted in new
chr21	42509244	42509658	ENSG00000231867.1|AP001625.1|lncRNA|chr21:42509244:42509658:+	0	+
#Deleted in new
chr21	42509320	42509661	ENSG00000231867.1|AP001625.1|lncRNA|chr21:42509320:42509661:+	0	+
#Partially deleted in new
chr21	42547102	42547717	ENSG00000160190.13|SLC37A1|pc|chr21:42547102:42547717:+	0	+
#Deleted in new
chr21	42560373	42560449	ENSG00000235772.1|AP001625.2|lncRNA|chr21:42560373:42560449:-	0	-
#Deleted in new
chr21	42561435	42561934	ENSG00000235772.1|AP001625.2|lncRNA|chr21:42561435:42561934:-	0	-
#Deleted in new
chr21	42575766	42575947	ENSG00000160190.13|SLC37A1|pc|chr21:42575766:42575947:+	0	+
#Deleted in new
chr21	42599279	42600848	ENSG00000225431.1|LINC01671|lncRNA|chr21:42599279:42600848:-	0	-
#Deleted in new
chr21	42614852	42615058	ENSG00000225431.1|LINC01671|lncRNA|chr21:42614852:42615058:-	0	-
#Partially deleted in new
chr21	42648270	42650443	ENSG00000235023.1|AP001626.1|lncRNA|chr21:42648270:42650443:-	0	-
#Deleted in new
chr21	42697414	42697490	ENSG00000160191.17|PDE9A|pc|chr21:42697414:42697490:+	0	+
#Deleted in new
chr21	42700693	42701189	ENSG00000160191.17|PDE9A|pc|chr21:42700693:42701189:+	0	+
#Deleted in new
chr21	42777818	42777997	ENSG00000283051.1|LINC01668|lncRNA|chr21:42777818:42777997:-	0	-
#Deleted in new
chr21	42778096	42778317	ENSG00000283051.1|LINC01668|lncRNA|chr21:42778096:42778317:-	0	-
#Deleted in new
chr21	42779881	42779994	ENSG00000283051.1|LINC01668|lncRNA|chr21:42779881:42779994:-	0	-
#Deleted in new
chr21	42781073	42781778	ENSG00000233754.2|AP001628.2|lncRNA|chr21:42781073:42781778:-	0	-
#Deleted in new
chr21	42782150	42782229	ENSG00000233754.2|AP001628.2|lncRNA|chr21:42782150:42782229:-	0	-
#Deleted in new
chr21	42831039	42831205	ENSG00000225218.1|AP001628.1|lncRNA|chr21:42831039:42831205:-	0	-
#Deleted in new
chr21	42834944	42835033	ENSG00000225218.1|AP001628.1|lncRNA|chr21:42834944:42835033:-	0	-
#Deleted in new
chr21	42836447	42836477	ENSG00000225218.1|AP001628.1|lncRNA|chr21:42836447:42836477:-	0	-
#Deleted in new
chr21	42843093	42843281	ENSG00000160193.11|WDR4|pc|chr21:42843093:42843281:-	0	-
#Partially deleted in new
chr21	42879643	42879865	ENSG00000160194.17|NDUFV3|pc|chr21:42879643:42879865:+	0	+
#Deleted in new
chr2	142881344	142881430	ENSG00000115919.14|KYNU|pc|chr2:142881344:142881430:+	0	+
#Deleted in new
chr21	42883605	42883795	ENSG00000160194.17|NDUFV3|pc|chr21:42883605:42883795:+	0	+
#Deleted in new
chr21	42886800	42886959	ENSG00000160194.17|NDUFV3|pc|chr21:42886800:42886959:+	0	+
#Partially deleted in new
chr21	42908863	42913304	ENSG00000160194.17|NDUFV3|pc|chr21:42908863:42913304:+	0	+
#Deleted in new
chr21	42916802	42919291	ENSG00000233056.2|ERVH48-1|lncRNA|chr21:42916802:42919291:-	0	-
#Deleted in new
chr21	42917249	42919343	ENSG00000233056.2|ERVH48-1|lncRNA|chr21:42917249:42919343:-	0	-
#Deleted in new
chr21	42925345	42925646	ENSG00000233056.2|ERVH48-1|lncRNA|chr21:42925345:42925646:-	0	-
#Deleted in new
chr21	42964638	42964814	ENSG00000224100.1|AP001630.1|lncRNA|chr21:42964638:42964814:-	0	-
#Deleted in new
chr2	142964652	142964752	ENSG00000115919.14|KYNU|pc|chr2:142964652:142964752:+	0	+
#Deleted in new
chr21	42965102	42965363	ENSG00000224100.1|AP001630.1|lncRNA|chr21:42965102:42965363:-	0	-
#Deleted in new
chr21	43020450	43020548	ENSG00000160199.14|PKNOX1|pc|chr21:43020450:43020548:+	0	+
#Deleted in new
chr21	43024434	43024734	ENSG00000160199.14|PKNOX1|pc|chr21:43024434:43024734:+	0	+
#Partially deleted in new
chr2	143042046	143055832	ENSG00000115919.14|KYNU|pc|chr2:143042046:143055832:+	0	+
#Deleted in new
chr21	43067777	43067960	ENSG00000160200.17|CBS|pc|chr21:43067777:43067960:-	0	-
#Deleted in new
chr21	43067777	43068404	ENSG00000160200.17|CBS|pc|chr21:43067777:43068404:-	0	-
#Deleted in new
chr21	43073265	43073303	ENSG00000160200.17|CBS|pc|chr21:43073265:43073303:-	0	-
#Deleted in new
chr21	43073265	43073341	ENSG00000160200.17|CBS|pc|chr21:43073265:43073341:-	0	-
#Deleted in new
chr21	43073265	43073508	ENSG00000160200.17|CBS|pc|chr21:43073265:43073508:-	0	-
#Deleted in new
chr21	43076224	43076288	ENSG00000160200.17|CBS|pc|chr21:43076224:43076288:-	0	-
#Deleted in new
chr21	43076224	43076362	ENSG00000160200.17|CBS|pc|chr21:43076224:43076362:-	0	-
#Deleted in new
chr21	43076224	43076378	ENSG00000160200.17|CBS|pc|chr21:43076224:43076378:-	0	-
#Deleted in new
chr21	43076739	43076943	ENSG00000160200.17|CBS|pc|chr21:43076739:43076943:-	0	-
#Deleted in new
chr2	143092156	143092258	ENSG00000075884.13|ARHGAP15|pc|chr2:143092156:143092258:+	0	+
#Partially deleted in new
chr21	43092955	43094563	ENSG00000160201.11|U2AF1|pc|chr21:43092955:43094563:-	0	-
#Deleted in new
chr21	43140522	43140813	ENSG00000236663.1|FRGCA|lncRNA|chr21:43140522:43140813:-	0	-
#Deleted in new
chr21	43140961	43141092	ENSG00000236663.1|FRGCA|lncRNA|chr21:43140961:43141092:-	0	-
#Deleted in new
chr21	43161088	43161252	ENSG00000228120.2|AP001631.1|lncRNA|chr21:43161088:43161252:-	0	-
#Deleted in new
chr21	43162091	43162277	ENSG00000228120.2|AP001631.1|lncRNA|chr21:43162091:43162277:-	0	-
#Deleted in new
chr2	143172150	143172172	ENSG00000257284.1|AC013437.1|lncRNA|chr2:143172150:143172172:-	0	-
#Deleted in new
chr2	143247289	143247404	ENSG00000075884.13|ARHGAP15|pc|chr2:143247289:143247404:+	0	+
#Deleted in new
chr2	143305364	143305460	ENSG00000257640.1|AC096558.2|lncRNA|chr2:143305364:143305460:-	0	-
#Deleted in new
chr21	43326158	43326240	ENSG00000237864.1|LINC00322|lncRNA|chr21:43326158:43326240:-	0	-
#Deleted in new
chr21	43331855	43332039	ENSG00000237864.1|LINC00322|lncRNA|chr21:43331855:43332039:-	0	-
#Deleted in new
chr21	43358146	43359486	ENSG00000237989.1|LINC01679|lncRNA|chr21:43358146:43359486:-	0	-
#Partially deleted in new
chr21	43360891	43362349	ENSG00000237989.1|LINC01679|lncRNA|chr21:43360891:43362349:-	0	-
#Deleted in new
chr21	43363331	43365687	ENSG00000225637.1|AP001046.1|lncRNA|chr21:43363331:43365687:+	0	+
#Deleted in new
chr21	43366106	43366566	ENSG00000225637.1|AP001046.1|lncRNA|chr21:43366106:43366566:+	0	+
#Deleted in new
chr21	43446600	43446899	ENSG00000188660.3|LINC00319|lncRNA|chr21:43446600:43446899:+	0	+
#Deleted in new
chr21	43448766	43449070	ENSG00000188660.3|LINC00319|lncRNA|chr21:43448766:43449070:+	0	+
#Partially deleted in new
chr21	43451172	43452505	ENSG00000188660.3|LINC00319|lncRNA|chr21:43451172:43452505:+	0	+
#Partially deleted in new
chr21	43451172	43453893	ENSG00000188660.3|LINC00319|lncRNA|chr21:43451172:43453893:+	0	+
#Deleted in new
chr21	43453120	43453893	ENSG00000188660.3|LINC00319|lncRNA|chr21:43453120:43453893:+	0	+
#Deleted in new
chr21	43462093	43462261	ENSG00000185186.8|LINC00313|lncRNA|chr21:43462093:43462261:-	0	-
#Deleted in new
chr21	43462111	43462261	ENSG00000185186.8|LINC00313|lncRNA|chr21:43462111:43462261:-	0	-
#Deleted in new
chr21	43462457	43462525	ENSG00000185186.8|LINC00313|lncRNA|chr21:43462457:43462525:-	0	-
#Deleted in new
chr21	43463339	43463489	ENSG00000185186.8|LINC00313|lncRNA|chr21:43463339:43463489:-	0	-
#Deleted in new
chr21	43464591	43464816	ENSG00000185186.8|LINC00313|lncRNA|chr21:43464591:43464816:-	0	-
#Deleted in new
chr21	43464872	43464917	ENSG00000185186.8|LINC00313|lncRNA|chr21:43464872:43464917:-	0	-
#Deleted in new
chr21	43464872	43464973	ENSG00000185186.8|LINC00313|lncRNA|chr21:43464872:43464973:-	0	-
#Deleted in new
chr21	43465308	43465347	ENSG00000223975.1|AP001048.1|lncRNA|chr21:43465308:43465347:+	0	+
#Deleted in new
chr21	43467057	43467298	ENSG00000223975.1|AP001048.1|lncRNA|chr21:43467057:43467298:+	0	+
#Deleted in new
chr21	43470432	43471318	ENSG00000185186.8|LINC00313|lncRNA|chr21:43470432:43471318:-	0	-
#Deleted in new
chr21	43471511	43471592	ENSG00000185186.8|LINC00313|lncRNA|chr21:43471511:43471592:-	0	-
#Deleted in new
chr21	43471511	43471694	ENSG00000185186.8|LINC00313|lncRNA|chr21:43471511:43471694:-	0	-
#Deleted in new
chr21	43475924	43476039	ENSG00000185186.8|LINC00313|lncRNA|chr21:43475924:43476039:-	0	-
#Deleted in new
chr21	43475971	43476039	ENSG00000185186.8|LINC00313|lncRNA|chr21:43475971:43476039:-	0	-
#Deleted in new
chr21	43476539	43476751	ENSG00000185186.8|LINC00313|lncRNA|chr21:43476539:43476751:-	0	-
#Deleted in new
chr21	43478063	43478149	ENSG00000185186.8|LINC00313|lncRNA|chr21:43478063:43478149:-	0	-
#Deleted in new
chr21	43478063	43478223	ENSG00000185186.8|LINC00313|lncRNA|chr21:43478063:43478223:-	0	-
#Deleted in new
chr21	43479499	43479534	ENSG00000185186.8|LINC00313|lncRNA|chr21:43479499:43479534:-	0	-
#Deleted in new
chr2	143571797	143572105	ENSG00000257640.1|AC096558.2|lncRNA|chr2:143571797:143572105:-	0	-
#Deleted in new
chr2	143587685	143587817	ENSG00000075884.13|ARHGAP15|pc|chr2:143587685:143587817:+	0	+
#Deleted in new
chr2	143676164	143676581	ENSG00000257277.1|AC092652.2|lncRNA|chr2:143676164:143676581:-	0	-
#Deleted in new
chr2	143676318	143676581	ENSG00000257277.1|AC092652.2|lncRNA|chr2:143676318:143676581:-	0	-
#Deleted in new
chr21	43685769	43685789	ENSG00000160208.12|RRP1B|pc|chr21:43685769:43685789:+	0	+
#Partially deleted in new
chr21	43686131	43686935	ENSG00000160208.12|RRP1B|pc|chr21:43686131:43686935:+	0	+
#Partially deleted in new
chr21	43728729	43729010	ENSG00000160209.18|PDXK|pc|chr21:43728729:43729010:+	0	+
#Deleted in new
chr21	43728899	43729010	ENSG00000160209.18|PDXK|pc|chr21:43728899:43729010:+	0	+
#Deleted in new
chr21	43728912	43729010	ENSG00000160209.18|PDXK|pc|chr21:43728912:43729010:+	0	+
#Deleted in new
chr21	43728916	43729010	ENSG00000160209.18|PDXK|pc|chr21:43728916:43729010:+	0	+
#Deleted in new
chr21	43733670	43733706	ENSG00000160209.18|PDXK|pc|chr21:43733670:43733706:+	0	+
#Deleted in new
chr21	43736953	43738858	ENSG00000160209.18|PDXK|pc|chr21:43736953:43738858:+	0	+
#Deleted in new
chr21	43736953	43738861	ENSG00000160209.18|PDXK|pc|chr21:43736953:43738861:+	0	+
#Deleted in new
chr21	43737580	43738831	ENSG00000160209.18|PDXK|pc|chr21:43737580:43738831:+	0	+
#Partially deleted in new
chr21	43741419	43741572	ENSG00000160209.18|PDXK|pc|chr21:43741419:43741572:+	0	+
#Partially deleted in new
chr21	43744470	43744650	ENSG00000160209.18|PDXK|pc|chr21:43744470:43744650:+	0	+
#Deleted in new
chr21	43747115	43747186	ENSG00000160209.18|PDXK|pc|chr21:43747115:43747186:+	0	+
#Partially deleted in new
chr2	143766619	143766887	ENSG00000257226.1|AC079584.2|lncRNA|chr2:143766619:143766887:-	0	-
#Partially deleted in new
chr21	43772510	43774330	ENSG00000160213.6|CSTB|pc|chr21:43772510:43774330:-	0	-
#Deleted in new
chr21	43790492	43791056	ENSG00000160214.12|RRP1|pc|chr21:43790492:43791056:+	0	+
#Deleted in new
chr21	43791015	43791056	ENSG00000160214.12|RRP1|pc|chr21:43791015:43791056:+	0	+
#Partially deleted in new
chr21	43803511	43805293	ENSG00000160214.12|RRP1|pc|chr21:43803511:43805293:+	0	+
#Deleted in new
chr21	43805757	43806588	ENSG00000215458.8|AATBC|lncRNA|chr21:43805757:43806588:-	0	-
#Deleted in new
chr21	43806963	43807239	ENSG00000215458.8|AATBC|lncRNA|chr21:43806963:43807239:-	0	-
#Deleted in new
chr21	43808800	43809451	ENSG00000215458.8|AATBC|lncRNA|chr21:43808800:43809451:-	0	-
#Partially deleted in new
chr21	43808800	43812567	ENSG00000215458.8|AATBC|lncRNA|chr21:43808800:43812567:-	0	-
#Deleted in new
chr21	43810230	43810331	ENSG00000215458.8|AATBC|lncRNA|chr21:43810230:43810331:-	0	-
#Partially deleted in new
chr21	43810230	43810361	ENSG00000215458.8|AATBC|lncRNA|chr21:43810230:43810361:-	0	-
#Partially deleted in new
chr2	1438815	1439399	ENSG00000115705.20|TPO|pc|chr2:1438815:1439399:+	0	+
#Partially deleted in new
chr2	1438815	1439402	ENSG00000115705.20|TPO|pc|chr2:1438815:1439402:+	0	+
#Deleted in new
chr21	43882543	43882615	ENSG00000160216.18|AGPAT3|pc|chr21:43882543:43882615:+	0	+
#Deleted in new
chr21	43903890	43904019	ENSG00000160216.18|AGPAT3|pc|chr21:43903890:43904019:+	0	+
#Deleted in new
chr21	43903956	43904019	ENSG00000160216.18|AGPAT3|pc|chr21:43903956:43904019:+	0	+
#Deleted in new
chr21	43916271	43916421	ENSG00000160216.18|AGPAT3|pc|chr21:43916271:43916421:+	0	+
#Deleted in new
chr21	43925007	43925451	ENSG00000160216.18|AGPAT3|pc|chr21:43925007:43925451:+	0	+
#Deleted in new
chr21	43948153	43948329	ENSG00000160216.18|AGPAT3|pc|chr21:43948153:43948329:+	0	+
#Deleted in new
chr21	43948153	43948342	ENSG00000160216.18|AGPAT3|pc|chr21:43948153:43948342:+	0	+
#Deleted in new
chr21	43948273	43948329	ENSG00000160216.18|AGPAT3|pc|chr21:43948273:43948329:+	0	+
#Deleted in new
chr21	43960631	43960779	ENSG00000160216.18|AGPAT3|pc|chr21:43960631:43960779:+	0	+
#Partially deleted in new
chr21	43964928	43968115	ENSG00000160216.18|AGPAT3|pc|chr21:43964928:43968115:+	0	+
#Deleted in new
chr21	44063052	44063168	ENSG00000160218.12|TRAPPC10|pc|chr21:44063052:44063168:+	0	+
#Deleted in new
chr21	44096604	44096704	ENSG00000160218.12|TRAPPC10|pc|chr21:44096604:44096704:+	0	+
#Deleted in new
chr21	44096604	44096713	ENSG00000160218.12|TRAPPC10|pc|chr21:44096604:44096713:+	0	+
#Partially deleted in new
chr21	44124579	44126119	ENSG00000241945.7|PWP2|pc|chr21:44124579:44126119:+	0	+
#Deleted in new
chr21	44140941	44141417	ENSG00000160221.16|C21orf33|pc|chr21:44140941:44141417:+	0	+
#Deleted in new
chr21	44141163	44141417	ENSG00000160221.16|C21orf33|pc|chr21:44141163:44141417:+	0	+
#Deleted in new
chr21	44158739	44159354	ENSG00000225331.1|LINC01678|lncRNA|chr21:44158739:44159354:-	0	-
#Deleted in new
chr21	44159014	44159161	ENSG00000225331.1|LINC01678|lncRNA|chr21:44159014:44159161:-	0	-
#Deleted in new
chr21	44159278	44159354	ENSG00000225331.1|LINC01678|lncRNA|chr21:44159278:44159354:-	0	-
#Deleted in new
chr21	44159824	44160072	ENSG00000225331.1|LINC01678|lncRNA|chr21:44159824:44160072:-	0	-
#Deleted in new
chr21	44159824	44160076	ENSG00000225331.1|LINC01678|lncRNA|chr21:44159824:44160076:-	0	-
#Deleted in new
chr21	44175488	44175535	ENSG00000237604.1|AP001056.1|lncRNA|chr21:44175488:44175535:+	0	+
#Deleted in new
chr21	44175679	44176453	ENSG00000237604.1|AP001056.1|lncRNA|chr21:44175679:44176453:+	0	+
#Deleted in new
chr2	144177134	144177217	ENSG00000121964.14|GTDC1|pc|chr2:144177134:144177217:-	0	-
#Deleted in new
chr2	144177134	144177240	ENSG00000121964.14|GTDC1|pc|chr2:144177134:144177240:-	0	-
#Partially deleted in new
chr2	144178833	144178960	ENSG00000121964.14|GTDC1|pc|chr2:144178833:144178960:-	0	-
#Partially deleted in new
chr2	144178834	144178936	ENSG00000121964.14|GTDC1|pc|chr2:144178834:144178936:-	0	-
#Partially deleted in new
chr2	144178834	144178960	ENSG00000121964.14|GTDC1|pc|chr2:144178834:144178960:-	0	-
#Deleted in new
chr21	44201289	44201957	ENSG00000232124.1|AP001057.1|lncRNA|chr21:44201289:44201957:+	0	+
#Deleted in new
chr21	44202565	44202696	ENSG00000232124.1|AP001057.1|lncRNA|chr21:44202565:44202696:+	0	+
#Deleted in new
chr21	44206524	44206790	ENSG00000232698.1|AP001058.1|lncRNA|chr21:44206524:44206790:-	0	-
#Deleted in new
chr21	44207202	44207399	ENSG00000232698.1|AP001058.1|lncRNA|chr21:44207202:44207399:-	0	-
#Deleted in new
chr21	44222990	44223078	ENSG00000160223.16|ICOSLG|pc|chr21:44222990:44223078:-	0	-
#Partially deleted in new
chr21	44222990	44229044	ENSG00000160223.16|ICOSLG|pc|chr21:44222990:44229044:-	0	-
#Deleted in new
chr21	44230053	44230089	ENSG00000160223.16|ICOSLG|pc|chr21:44230053:44230089:-	0	-
#Deleted in new
chr21	44231279	44231444	ENSG00000160223.16|ICOSLG|pc|chr21:44231279:44231444:-	0	-
#Deleted in new
chr2	144237243	144237341	ENSG00000121964.14|GTDC1|pc|chr2:144237243:144237341:-	0	-
#Deleted in new
chr21	44241846	44242081	ENSG00000278158.1|AP001059.3|lncRNA|chr21:44241846:44242081:+	0	+
#Deleted in new
chr21	44244544	44244993	ENSG00000275799.1|AP001059.2|lncRNA|chr21:44244544:44244993:+	0	+
#Deleted in new
chr21	44251085	44251238	ENSG00000142182.8|DNMT3L|pc|chr21:44251085:44251238:-	0	-
#Deleted in new
chr21	44251126	44251520	ENSG00000232010.1|AP001059.1|lncRNA|chr21:44251126:44251520:+	0	+
#Deleted in new
chr2	144295274	144295318	ENSG00000121964.14|GTDC1|pc|chr2:144295274:144295318:-	0	-
#Partially deleted in new
chr21	44297655	44297989	ENSG00000160224.16|AIRE|pc|chr21:44297655:44297989:+	0	+
#Partially deleted in new
chr21	44297655	44298219	ENSG00000160224.16|AIRE|pc|chr21:44297655:44298219:+	0	+
#Partially deleted in new
chr21	44297655	44298648	ENSG00000160224.16|AIRE|pc|chr21:44297655:44298648:+	0	+
#Deleted in new
chr21	44304274	44304318	ENSG00000141959.16|PFKL|pc|chr21:44304274:44304318:+	0	+
#Deleted in new
chr21	44304274	44304455	ENSG00000141959.16|PFKL|pc|chr21:44304274:44304455:+	0	+
#Deleted in new
chr21	44305193	44305417	ENSG00000141959.16|PFKL|pc|chr21:44305193:44305417:+	0	+
#Deleted in new
chr21	44305256	44305417	ENSG00000141959.16|PFKL|pc|chr21:44305256:44305417:+	0	+
#Deleted in new
chr21	44305799	44305935	ENSG00000141959.16|PFKL|pc|chr21:44305799:44305935:+	0	+
#Deleted in new
chr2	144317478	144317588	ENSG00000121964.14|GTDC1|pc|chr2:144317478:144317588:-	0	-
#Partially deleted in new
chr21	44320576	44321875	ENSG00000141959.16|PFKL|pc|chr21:44320576:44321875:+	0	+
#Deleted in new
chr21	44328943	44329231	ENSG00000241728.5|AP001062.3|lncRNA|chr21:44328943:44329231:-	0	-
#Partially deleted in new
chr21	44328943	44330326	ENSG00000160226.15|C21orf2|pc|chr21:44328943:44330326:-	0	-
#Deleted in new
chr21	44329630	44329819	ENSG00000241728.5|AP001062.3|lncRNA|chr21:44329630:44329819:-	0	-
#Partially deleted in new
chr21	44330462	44330916	ENSG00000160226.15|C21orf2|pc|chr21:44330462:44330916:-	0	-
#Partially deleted in new
chr21	44330462	44332014	ENSG00000160226.15|C21orf2|pc|chr21:44330462:44332014:-	0	-
#Partially deleted in new
chr21	44334060	44335804	ENSG00000160226.15|C21orf2|pc|chr21:44334060:44335804:-	0	-
#Deleted in new
chr21	44336823	44336920	ENSG00000160226.15|C21orf2|pc|chr21:44336823:44336920:-	0	-
#Deleted in new
chr21	44340438	44340470	ENSG00000232969.1|AP001062.2|lncRNA|chr21:44340438:44340470:+	0	+
#Partially deleted in new
chr21	44347766	44348295	ENSG00000260256.1|AP001063.1|lncRNA|chr21:44347766:44348295:-	0	-
#Partially deleted in new
chr2	144397877	144397928	ENSG00000169554.18|ZEB2|pc|chr2:144397877:144397928:-	0	-
#Deleted in new
chr21	44414587	44414944	ENSG00000230061.2|TRPM2-AS|lncRNA|chr21:44414587:44414944:-	0	-
#Deleted in new
chr21	44414594	44414944	ENSG00000230061.2|TRPM2-AS|lncRNA|chr21:44414594:44414944:-	0	-
#Deleted in new
chr21	44415034	44416740	ENSG00000230061.2|TRPM2-AS|lncRNA|chr21:44415034:44416740:-	0	-
#Partially deleted in new
chr21	44441691	44442358	ENSG00000142185.16|TRPM2|pc|chr21:44441691:44442358:+	0	+
#Partially deleted in new
chr21	44441691	44442644	ENSG00000142185.16|TRPM2|pc|chr21:44441691:44442644:+	0	+
#Partially deleted in new
chr21	44441691	44443081	ENSG00000142185.16|TRPM2|pc|chr21:44441691:44443081:+	0	+
#Deleted in new
chr2	144450156	144450450	ENSG00000283118.1|AC009951.2|lncRNA|chr2:144450156:144450450:+	0	+
#Deleted in new
chr21	44450985	44451289	ENSG00000229356.1|LRRC3-AS1|lncRNA|chr21:44450985:44451289:-	0	-
#Deleted in new
chr21	44451406	44451769	ENSG00000229356.1|LRRC3-AS1|lncRNA|chr21:44451406:44451769:-	0	-
#Deleted in new
chr21	44477849	44478493	ENSG00000274225.1|AP001065.2|lncRNA|chr21:44477849:44478493:+	0	+
#Deleted in new
chr21	44485576	44486230	ENSG00000228709.1|AP001065.1|lncRNA|chr21:44485576:44486230:+	0	+
#Deleted in new
chr21	44490030	44490288	ENSG00000228709.1|AP001065.1|lncRNA|chr21:44490030:44490288:+	0	+
#Deleted in new
chr21	44506806	44507099	ENSG00000235890.2|TSPEAR-AS1|lncRNA|chr21:44506806:44507099:+	0	+
#Deleted in new
chr21	44508726	44508929	ENSG00000235890.2|TSPEAR-AS1|lncRNA|chr21:44508726:44508929:+	0	+
#Deleted in new
chr21	44509822	44509927	ENSG00000235890.2|TSPEAR-AS1|lncRNA|chr21:44509822:44509927:+	0	+
#Deleted in new
chr21	44515496	44515623	ENSG00000235890.2|TSPEAR-AS1|lncRNA|chr21:44515496:44515623:+	0	+
#Deleted in new
chr21	44515496	44516575	ENSG00000235890.2|TSPEAR-AS1|lncRNA|chr21:44515496:44516575:+	0	+
#Deleted in new
chr21	44517215	44517835	ENSG00000182912.6|TSPEAR-AS2|lncRNA|chr21:44517215:44517835:+	0	+
#Deleted in new
chr21	44517616	44517835	ENSG00000182912.6|TSPEAR-AS2|lncRNA|chr21:44517616:44517835:+	0	+
#Deleted in new
chr21	44517619	44517835	ENSG00000182912.6|TSPEAR-AS2|lncRNA|chr21:44517619:44517835:+	0	+
#Deleted in new
chr21	44518258	44518332	ENSG00000182912.6|TSPEAR-AS2|lncRNA|chr21:44518258:44518332:+	0	+
#Deleted in new
chr21	44518627	44518756	ENSG00000182912.6|TSPEAR-AS2|lncRNA|chr21:44518627:44518756:+	0	+
#Deleted in new
chr21	44518627	44520830	ENSG00000182912.6|TSPEAR-AS2|lncRNA|chr21:44518627:44520830:+	0	+
#Deleted in new
chr21	44573779	44573816	ENSG00000175894.14|TSPEAR|pc|chr21:44573779:44573816:-	0	-
#Duplicated in new
chr21	44573821	44574046	ENSG00000215454.6|KRTAP10-4|pc|chr21:44573821:44574046:+	0	+
#Deleted in new
chr21	44690544	44690606	ENSG00000175894.14|TSPEAR|pc|chr21:44690544:44690606:-	0	-
#Partially deleted in new
chr21	44773546	44775436	ENSG00000184787.18|UBE2G2|pc|chr21:44773546:44775436:-	0	-
#Deleted in new
chr21	44774530	44774820	ENSG00000184787.18|UBE2G2|pc|chr21:44774530:44774820:-	0	-
#Deleted in new
chr21	44774566	44774741	ENSG00000184787.18|UBE2G2|pc|chr21:44774566:44774741:-	0	-
#Deleted in new
chr21	44774720	44774820	ENSG00000184787.18|UBE2G2|pc|chr21:44774720:44774820:-	0	-
#Deleted in new
chr21	44779143	44779216	ENSG00000184787.18|UBE2G2|pc|chr21:44779143:44779216:-	0	-
#Deleted in new
chr21	44799989	44801398	ENSG00000184787.18|UBE2G2|pc|chr21:44799989:44801398:-	0	-
#Deleted in new
chr21	44801283	44801398	ENSG00000184787.18|UBE2G2|pc|chr21:44801283:44801398:-	0	-
#Deleted in new
chr21	44802576	44802636	ENSG00000236519.1|LINC01424|lncRNA|chr21:44802576:44802636:+	0	+
#Deleted in new
chr21	44803746	44804717	ENSG00000236519.1|LINC01424|lncRNA|chr21:44803746:44804717:+	0	+
#Deleted in new
chr21	44808270	44808568	ENSG00000184900.15|SUMO3|pc|chr21:44808270:44808568:-	0	-
#Deleted in new
chr21	44818668	44818779	ENSG00000184900.15|SUMO3|pc|chr21:44818668:44818779:-	0	-
#Deleted in new
chr21	44861727	44861933	ENSG00000183255.11|PTTG1IP|pc|chr21:44861727:44861933:-	0	-
#Deleted in new
chr21	44872853	44873032	ENSG00000183255.11|PTTG1IP|pc|chr21:44872853:44873032:-	0	-
#Partially deleted in new
chr2	144877733	144878113	ENSG00000268580.1|LINC01966|lncRNA|chr2:144877733:144878113:-	0	-
#Deleted in new
chr2	144881629	144882033	ENSG00000268580.1|LINC01966|lncRNA|chr2:144881629:144882033:-	0	-
#Deleted in new
chr2	144903665	144903783	ENSG00000226674.8|TEX41|lncRNA|chr2:144903665:144903783:+	0	+
#Deleted in new
chr2	144903665	144903803	ENSG00000226674.8|TEX41|lncRNA|chr2:144903665:144903803:+	0	+
#Deleted in new
chr21	44909319	44909491	ENSG00000160255.17|ITGB2|pc|chr21:44909319:44909491:-	0	-
#Deleted in new
chr21	44911375	44911460	ENSG00000160255.17|ITGB2|pc|chr21:44911375:44911460:-	0	-
#Deleted in new
chr21	44920820	44920855	ENSG00000160255.17|ITGB2|pc|chr21:44920820:44920855:-	0	-
#Deleted in new
chr21	44920820	44920875	ENSG00000160255.17|ITGB2|pc|chr21:44920820:44920875:-	0	-
#Deleted in new
chr21	44920820	44920896	ENSG00000160255.17|ITGB2|pc|chr21:44920820:44920896:-	0	-
#Deleted in new
chr21	44920820	44920899	ENSG00000160255.17|ITGB2|pc|chr21:44920820:44920899:-	0	-
#Deleted in new
chr21	44920820	44920927	ENSG00000160255.17|ITGB2|pc|chr21:44920820:44920927:-	0	-
#Deleted in new
chr21	44920820	44920932	ENSG00000160255.17|ITGB2|pc|chr21:44920820:44920932:-	0	-
#Deleted in new
chr21	44920820	44920942	ENSG00000160255.17|ITGB2|pc|chr21:44920820:44920942:-	0	-
#Deleted in new
chr21	44920820	44920960	ENSG00000160255.17|ITGB2|pc|chr21:44920820:44920960:-	0	-
#Deleted in new
chr21	44920820	44920962	ENSG00000160255.17|ITGB2|pc|chr21:44920820:44920962:-	0	-
#Deleted in new
chr21	44920820	44921050	ENSG00000160255.17|ITGB2|pc|chr21:44920820:44921050:-	0	-
#Deleted in new
chr21	44920820	44921133	ENSG00000160255.17|ITGB2|pc|chr21:44920820:44921133:-	0	-
#Deleted in new
chr21	44921050	44921327	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44921050:44921327:+	0	+
#Deleted in new
chr21	44921072	44921327	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44921072:44921327:+	0	+
#Deleted in new
chr21	44921072	44921351	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44921072:44921351:+	0	+
#Deleted in new
chr21	44921075	44921327	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44921075:44921327:+	0	+
#Deleted in new
chr21	44921325	44921351	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44921325:44921351:+	0	+
#Deleted in new
chr21	44922912	44922983	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44922912:44922983:+	0	+
#Deleted in new
chr21	44926806	44926918	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44926806:44926918:+	0	+
#Deleted in new
chr21	44926867	44927004	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44926867:44927004:+	0	+
#Deleted in new
chr21	44927624	44927667	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44927624:44927667:+	0	+
#Deleted in new
chr21	44927853	44927902	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44927853:44927902:+	0	+
#Deleted in new
chr21	44927853	44927942	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44927853:44927942:+	0	+
#Deleted in new
chr21	44927853	44927944	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44927853:44927944:+	0	+
#Deleted in new
chr21	44927853	44928028	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44927853:44928028:+	0	+
#Deleted in new
chr21	44927853	44929678	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44927853:44929678:+	0	+
#Deleted in new
chr21	44927879	44927970	ENSG00000227039.6|ITGB2-AS1|lncRNA|chr21:44927879:44927970:+	0	+
#Deleted in new
chr21	44928653	44928718	ENSG00000160255.17|ITGB2|pc|chr21:44928653:44928718:-	0	-
#Deleted in new
chr21	44928653	44928838	ENSG00000160255.17|ITGB2|pc|chr21:44928653:44928838:-	0	-
#Deleted in new
chr21	44928653	44928873	ENSG00000160255.17|ITGB2|pc|chr21:44928653:44928873:-	0	-
#Deleted in new
chr21	44929652	44930112	ENSG00000273027.1|AL844908.2|lncRNA|chr21:44929652:44930112:-	0	-
#Deleted in new
chr21	44931813	44931989	ENSG00000160255.17|ITGB2|pc|chr21:44931813:44931989:-	0	-
#Deleted in new
chr21	44932813	44934368	ENSG00000183250.11|LINC01547|lncRNA|chr21:44932813:44934368:-	0	-
#Deleted in new
chr21	44934724	44935096	ENSG00000183250.11|LINC01547|lncRNA|chr21:44934724:44935096:-	0	-
#Deleted in new
chr21	44934933	44934973	ENSG00000183250.11|LINC01547|lncRNA|chr21:44934933:44934973:-	0	-
#Deleted in new
chr21	44934933	44935096	ENSG00000183250.11|LINC01547|lncRNA|chr21:44934933:44935096:-	0	-
#Deleted in new
chr21	44935626	44935890	ENSG00000183250.11|LINC01547|lncRNA|chr21:44935626:44935890:-	0	-
#Deleted in new
chr21	44936302	44936954	ENSG00000272825.1|AL844908.1|lncRNA|chr21:44936302:44936954:+	0	+
#Deleted in new
chr21	44937538	44937682	ENSG00000183250.11|LINC01547|lncRNA|chr21:44937538:44937682:-	0	-
#Deleted in new
chr21	44939592	44939845	ENSG00000183250.11|LINC01547|lncRNA|chr21:44939592:44939845:-	0	-
#Partially deleted in new
chr21	44939592	44939913	ENSG00000183250.11|LINC01547|lncRNA|chr21:44939592:44939913:-	0	-
#Deleted in new
chr21	44958245	44958424	ENSG00000160256.12|FAM207A|pc|chr21:44958245:44958424:+	0	+
#Deleted in new
chr21	44978831	44979274	ENSG00000276529.1|AP001505.2|lncRNA|chr21:44978831:44979274:+	0	+
#Partially deleted in new
chr21	44989863	44991832	ENSG00000234880.1|LINC00163|lncRNA|chr21:44989863:44991832:-	0	-
#Partially deleted in new
chr21	44989863	44991835	ENSG00000234880.1|LINC00163|lncRNA|chr21:44989863:44991835:-	0	-
#Deleted in new
chr21	44993903	44994069	ENSG00000234880.1|LINC00163|lncRNA|chr21:44993903:44994069:-	0	-
#Deleted in new
chr21	44993903	44994086	ENSG00000234880.1|LINC00163|lncRNA|chr21:44993903:44994086:-	0	-
#Deleted in new
chr21	44999207	44999656	ENSG00000275874.1|PICSAR|lncRNA|chr21:44999207:44999656:-	0	-
#Deleted in new
chr21	45004443	45004727	ENSG00000275874.1|PICSAR|lncRNA|chr21:45004443:45004727:-	0	-
#Partially deleted in new
chr2	145016367	145016523	ENSG00000226674.8|TEX41|lncRNA|chr2:145016367:145016523:+	0	+
#Deleted in new
chr2	145043625	145043775	ENSG00000226674.8|TEX41|lncRNA|chr2:145043625:145043775:+	0	+
#Deleted in new
chr2	145043625	145043945	ENSG00000226674.8|TEX41|lncRNA|chr2:145043625:145043945:+	0	+
#Deleted in new
chr2	145043886	145044011	ENSG00000226674.8|TEX41|lncRNA|chr2:145043886:145044011:+	0	+
#Deleted in new
chr2	145043886	145044067	ENSG00000226674.8|TEX41|lncRNA|chr2:145043886:145044067:+	0	+
#Deleted in new
chr2	145057650	145057728	ENSG00000226674.8|TEX41|lncRNA|chr2:145057650:145057728:+	0	+
#Partially deleted in new
chr2	145057650	145058210	ENSG00000226674.8|TEX41|lncRNA|chr2:145057650:145058210:+	0	+
#Deleted in new
chr2	145057690	145057728	ENSG00000226674.8|TEX41|lncRNA|chr2:145057690:145057728:+	0	+
#Deleted in new
chr2	145057813	145057905	ENSG00000226674.8|TEX41|lncRNA|chr2:145057813:145057905:+	0	+
#Deleted in new
chr2	145070818	145070941	ENSG00000226674.8|TEX41|lncRNA|chr2:145070818:145070941:+	0	+
#Deleted in new
chr2	145070819	145070941	ENSG00000226674.8|TEX41|lncRNA|chr2:145070819:145070941:+	0	+
#Deleted in new
chr2	145072523	145072646	ENSG00000226674.8|TEX41|lncRNA|chr2:145072523:145072646:+	0	+
#Deleted in new
chr2	145072523	145072654	ENSG00000226674.8|TEX41|lncRNA|chr2:145072523:145072654:+	0	+
#Deleted in new
chr2	145072523	145072823	ENSG00000226674.8|TEX41|lncRNA|chr2:145072523:145072823:+	0	+
#Deleted in new
chr2	145072523	145072843	ENSG00000226674.8|TEX41|lncRNA|chr2:145072523:145072843:+	0	+
#Deleted in new
chr2	145072523	145072921	ENSG00000226674.8|TEX41|lncRNA|chr2:145072523:145072921:+	0	+
#Deleted in new
chr2	145072523	145072931	ENSG00000226674.8|TEX41|lncRNA|chr2:145072523:145072931:+	0	+
#Deleted in new
chr2	145072523	145073025	ENSG00000226674.8|TEX41|lncRNA|chr2:145072523:145073025:+	0	+
#Deleted in new
chr2	145072523	145073085	ENSG00000226674.8|TEX41|lncRNA|chr2:145072523:145073085:+	0	+
#Deleted in new
chr2	145072523	145073146	ENSG00000226674.8|TEX41|lncRNA|chr2:145072523:145073146:+	0	+
#Partially deleted in new
chr2	145072523	145074095	ENSG00000226674.8|TEX41|lncRNA|chr2:145072523:145074095:+	0	+
#Deleted in new
chr2	145072630	145072646	ENSG00000226674.8|TEX41|lncRNA|chr2:145072630:145072646:+	0	+
#Deleted in new
chr2	145073456	145073690	ENSG00000226674.8|TEX41|lncRNA|chr2:145073456:145073690:+	0	+
#Deleted in new
chr21	45073852	45073903	ENSG00000197381.15|ADARB1|pc|chr21:45073852:45073903:+	0	+
#Deleted in new
chr21	45116932	45117038	ENSG00000197381.15|ADARB1|pc|chr21:45116932:45117038:+	0	+
#Deleted in new
chr2	145129483	145129581	ENSG00000226674.8|TEX41|lncRNA|chr2:145129483:145129581:+	0	+
#Deleted in new
chr21	45132214	45132306	ENSG00000197381.15|ADARB1|pc|chr21:45132214:45132306:+	0	+
#Partially deleted in new
chr21	45133558	45133682	ENSG00000197381.15|ADARB1|pc|chr21:45133558:45133682:+	0	+
#Deleted in new
chr21	45134714	45134832	ENSG00000197381.15|ADARB1|pc|chr21:45134714:45134832:+	0	+
#Deleted in new
chr21	45134725	45134832	ENSG00000197381.15|ADARB1|pc|chr21:45134725:45134832:+	0	+
#Deleted in new
chr21	45134795	45134832	ENSG00000197381.15|ADARB1|pc|chr21:45134795:45134832:+	0	+
#Deleted in new
chr21	45137080	45137326	ENSG00000197381.15|ADARB1|pc|chr21:45137080:45137326:+	0	+
#Deleted in new
chr21	45144630	45144682	ENSG00000197381.15|ADARB1|pc|chr21:45144630:45144682:+	0	+
#Deleted in new
chr21	45144630	45144962	ENSG00000197381.15|ADARB1|pc|chr21:45144630:45144962:+	0	+
#Deleted in new
chr21	45145163	45146295	ENSG00000197381.15|ADARB1|pc|chr21:45145163:45146295:+	0	+
#Deleted in new
chr2	145151470	145151699	ENSG00000226674.8|TEX41|lncRNA|chr2:145151470:145151699:+	0	+
#Deleted in new
chr2	145151470	145151962	ENSG00000226674.8|TEX41|lncRNA|chr2:145151470:145151962:+	0	+
#Deleted in new
chr2	145151470	145151967	ENSG00000226674.8|TEX41|lncRNA|chr2:145151470:145151967:+	0	+
#Deleted in new
chr2	145151470	145152141	ENSG00000226674.8|TEX41|lncRNA|chr2:145151470:145152141:+	0	+
#Deleted in new
chr2	145151470	145152502	ENSG00000226674.8|TEX41|lncRNA|chr2:145151470:145152502:+	0	+
#Deleted in new
chr2	145171997	145172013	ENSG00000226674.8|TEX41|lncRNA|chr2:145171997:145172013:+	0	+
#Deleted in new
chr2	145171997	145172016	ENSG00000226674.8|TEX41|lncRNA|chr2:145171997:145172016:+	0	+
#Deleted in new
chr2	145171997	145172039	ENSG00000226674.8|TEX41|lncRNA|chr2:145171997:145172039:+	0	+
#Deleted in new
chr2	145171997	145172078	ENSG00000226674.8|TEX41|lncRNA|chr2:145171997:145172078:+	0	+
#Deleted in new
chr2	145171997	145172085	ENSG00000226674.8|TEX41|lncRNA|chr2:145171997:145172085:+	0	+
#Deleted in new
chr2	145171997	145172108	ENSG00000226674.8|TEX41|lncRNA|chr2:145171997:145172108:+	0	+
#Deleted in new
chr2	145171997	145172117	ENSG00000226674.8|TEX41|lncRNA|chr2:145171997:145172117:+	0	+
#Deleted in new
chr2	145171997	145172131	ENSG00000226674.8|TEX41|lncRNA|chr2:145171997:145172131:+	0	+
#Deleted in new
chr2	145171997	145172675	ENSG00000226674.8|TEX41|lncRNA|chr2:145171997:145172675:+	0	+
#Deleted in new
chr2	145174886	145174992	ENSG00000226674.8|TEX41|lncRNA|chr2:145174886:145174992:+	0	+
#Deleted in new
chr2	145174886	145174996	ENSG00000226674.8|TEX41|lncRNA|chr2:145174886:145174996:+	0	+
#Deleted in new
chr2	145174889	145174992	ENSG00000226674.8|TEX41|lncRNA|chr2:145174889:145174992:+	0	+
#Deleted in new
chr2	145174889	145174996	ENSG00000226674.8|TEX41|lncRNA|chr2:145174889:145174996:+	0	+
#Deleted in new
chr2	145178732	145178967	ENSG00000226674.8|TEX41|lncRNA|chr2:145178732:145178967:+	0	+
#Deleted in new
chr2	145178876	145178967	ENSG00000226674.8|TEX41|lncRNA|chr2:145178876:145178967:+	0	+
#Partially deleted in new
chr2	145181196	145181293	ENSG00000226674.8|TEX41|lncRNA|chr2:145181196:145181293:+	0	+
#Deleted in new
chr21	45181479	45181516	ENSG00000197381.15|ADARB1|pc|chr21:45181479:45181516:+	0	+
#Deleted in new
chr21	45184473	45184593	ENSG00000197381.15|ADARB1|pc|chr21:45184473:45184593:+	0	+
#Deleted in new
chr2	145188867	145188907	ENSG00000226674.8|TEX41|lncRNA|chr2:145188867:145188907:+	0	+
#Deleted in new
chr2	145188867	145189140	ENSG00000226674.8|TEX41|lncRNA|chr2:145188867:145189140:+	0	+
#Deleted in new
chr2	145189073	145189140	ENSG00000226674.8|TEX41|lncRNA|chr2:145189073:145189140:+	0	+
#Deleted in new
chr2	145224886	145224972	ENSG00000226674.8|TEX41|lncRNA|chr2:145224886:145224972:+	0	+
#Partially deleted in new
chr21	45234351	45234506	ENSG00000182586.8|LINC00334|lncRNA|chr21:45234351:45234506:+	0	+
#Deleted in new
chr21	45243531	45243626	ENSG00000182586.8|LINC00334|lncRNA|chr21:45243531:45243626:+	0	+
#Deleted in new
chr21	45256910	45257267	ENSG00000182586.8|LINC00334|lncRNA|chr21:45256910:45257267:+	0	+
#Deleted in new
chr2	145261880	145261941	ENSG00000226674.8|TEX41|lncRNA|chr2:145261880:145261941:+	0	+
#Partially deleted in new
chr21	45263927	45265635	ENSG00000186866.16|POFUT2|pc|chr21:45263927:45265635:-	0	-
#Partially deleted in new
chr21	45263927	45267713	ENSG00000186866.16|POFUT2|pc|chr21:45263927:45267713:-	0	-
#Partially deleted in new
chr21	45263928	45265635	ENSG00000186866.16|POFUT2|pc|chr21:45263928:45265635:-	0	-
#Partially deleted in new
chr21	45263978	45265635	ENSG00000186866.16|POFUT2|pc|chr21:45263978:45265635:-	0	-
#Deleted in new
chr21	45264238	45264548	ENSG00000182586.8|LINC00334|lncRNA|chr21:45264238:45264548:+	0	+
#Deleted in new
chr21	45266021	45266227	ENSG00000186866.16|POFUT2|pc|chr21:45266021:45266227:-	0	-
#Deleted in new
chr21	45266021	45266375	ENSG00000186866.16|POFUT2|pc|chr21:45266021:45266375:-	0	-
#Deleted in new
chr21	45288051	45288244	ENSG00000215447.7|BX322557.1|lncRNA|chr21:45288051:45288244:+	0	+
#Deleted in new
chr21	45288061	45288165	ENSG00000215447.7|BX322557.1|lncRNA|chr21:45288061:45288165:+	0	+
#Deleted in new
chr21	45289350	45289438	ENSG00000215447.7|BX322557.1|lncRNA|chr21:45289350:45289438:+	0	+
#Deleted in new
chr21	45290470	45290578	ENSG00000215447.7|BX322557.1|lncRNA|chr21:45290470:45290578:+	0	+
#Deleted in new
chr21	45290470	45291738	ENSG00000215447.7|BX322557.1|lncRNA|chr21:45290470:45291738:+	0	+
#Partially deleted in new
chr21	45293284	45293522	ENSG00000223768.1|LINC00205|lncRNA|chr21:45293284:45293522:+	0	+
#Partially deleted in new
chr2	145294276	145294406	ENSG00000235435.1|AC096666.1|lncRNA|chr2:145294276:145294406:-	0	-
#Deleted in new
chr21	45296201	45297354	ENSG00000223768.1|LINC00205|lncRNA|chr21:45296201:45297354:+	0	+
#Partially deleted in new
chr21	45302257	45303515	ENSG00000184274.3|LINC00315|lncRNA|chr21:45302257:45303515:-	0	-
#Deleted in new
chr21	45304487	45305257	ENSG00000184274.3|LINC00315|lncRNA|chr21:45304487:45305257:-	0	-
#Deleted in new
chr21	45336706	45336815	ENSG00000229382.1|BX322557.2|lncRNA|chr21:45336706:45336815:+	0	+
#Deleted in new
chr21	45338395	45338665	ENSG00000229382.1|BX322557.2|lncRNA|chr21:45338395:45338665:+	0	+
#Deleted in new
chr21	45338589	45338878	ENSG00000237664.1|LINC00316|lncRNA|chr21:45338589:45338878:-	0	-
#Deleted in new
chr21	45379532	45379624	ENSG00000228355.1|BX322559.1|lncRNA|chr21:45379532:45379624:-	0	-
#Deleted in new
chr21	45379532	45379635	ENSG00000228355.1|BX322559.1|lncRNA|chr21:45379532:45379635:-	0	-
#Deleted in new
chr21	45422411	45422661	ENSG00000183535.9|COL18A1-AS1|lncRNA|chr21:45422411:45422661:-	0	-
#Deleted in new
chr21	45423769	45425040	ENSG00000183535.9|COL18A1-AS1|lncRNA|chr21:45423769:45425040:-	0	-
#Deleted in new
chr21	45424883	45425070	ENSG00000183535.9|COL18A1-AS1|lncRNA|chr21:45424883:45425070:-	0	-
#Partially deleted in new
chr21	45506018	45507593	ENSG00000182871.14|COL18A1|pc|chr21:45506018:45507593:+	0	+
#Deleted in new
chr21	45534537	45534706	ENSG00000173638.18|SLC19A1|pc|chr21:45534537:45534706:-	0	-
#Deleted in new
chr21	45535983	45536528	ENSG00000173638.18|SLC19A1|pc|chr21:45535983:45536528:-	0	-
#Deleted in new
chr21	45543776	45543859	ENSG00000173638.18|SLC19A1|pc|chr21:45543776:45543859:-	0	-
#Deleted in new
chr21	45544136	45544400	ENSG00000173638.18|SLC19A1|pc|chr21:45544136:45544400:-	0	-
#Deleted in new
chr21	45544136	45544402	ENSG00000173638.18|SLC19A1|pc|chr21:45544136:45544402:-	0	-
#Deleted in new
chr21	45544136	45544411	ENSG00000173638.18|SLC19A1|pc|chr21:45544136:45544411:-	0	-
#Deleted in new
chr2	145569293	145569901	ENSG00000225107.1|AC092484.1|lncRNA|chr2:145569293:145569901:-	0	-
#Deleted in new
chr2	145577778	145577902	ENSG00000225107.1|AC092484.1|lncRNA|chr2:145577778:145577902:-	0	-
#Deleted in new
chr2	145587987	145588024	ENSG00000225107.1|AC092484.1|lncRNA|chr2:145587987:145588024:-	0	-
#Deleted in new
chr21	45593653	45593708	ENSG00000233922.2|LINC01694|lncRNA|chr21:45593653:45593708:+	0	+
#Deleted in new
chr21	45593677	45593708	ENSG00000233922.2|LINC01694|lncRNA|chr21:45593677:45593708:+	0	+
#Partially deleted in new
chr21	45596390	45603056	ENSG00000233922.2|LINC01694|lncRNA|chr21:45596390:45603056:+	0	+
#Deleted in new
chr2	145600906	145601063	ENSG00000226218.1|AC079163.1|lncRNA|chr2:145600906:145601063:-	0	-
#Deleted in new
chr2	145603088	145603152	ENSG00000226218.1|AC079163.1|lncRNA|chr2:145603088:145603152:-	0	-
#Deleted in new
chr2	145603237	145603423	ENSG00000226218.1|AC079163.1|lncRNA|chr2:145603237:145603423:-	0	-
#Deleted in new
chr21	45728675	45728748	ENSG00000183570.16|PCBP3|pc|chr21:45728675:45728748:+	0	+
#Deleted in new
chr21	45732724	45732756	ENSG00000183570.16|PCBP3|pc|chr21:45732724:45732756:+	0	+
#Deleted in new
chr21	45735391	45735429	ENSG00000183570.16|PCBP3|pc|chr21:45735391:45735429:+	0	+
#Deleted in new
chr21	45744230	45744337	ENSG00000183570.16|PCBP3|pc|chr21:45744230:45744337:+	0	+
#Deleted in new
chr21	45752849	45752986	ENSG00000183570.16|PCBP3|pc|chr21:45752849:45752986:+	0	+
#Deleted in new
chr21	45827960	45831241	ENSG00000205424.1|AL592528.1|lncRNA|chr21:45827960:45831241:-	0	-
#Deleted in new
chr21	45832607	45832658	ENSG00000205424.1|AL592528.1|lncRNA|chr21:45832607:45832658:-	0	-
#Deleted in new
chr21	45836285	45836419	ENSG00000205424.1|AL592528.1|lncRNA|chr21:45836285:45836419:-	0	-
#Deleted in new
chr21	45848162	45848401	ENSG00000183570.16|PCBP3|pc|chr21:45848162:45848401:+	0	+
#Deleted in new
chr21	45853970	45854008	ENSG00000183570.16|PCBP3|pc|chr21:45853970:45854008:+	0	+
#Deleted in new
chr21	45858335	45858458	ENSG00000183570.16|PCBP3|pc|chr21:45858335:45858458:+	0	+
#Deleted in new
chr21	45858680	45858810	ENSG00000183570.16|PCBP3|pc|chr21:45858680:45858810:+	0	+
#Deleted in new
chr21	45858894	45859003	ENSG00000183570.16|PCBP3|pc|chr21:45858894:45859003:+	0	+
#Deleted in new
chr21	45858936	45859003	ENSG00000183570.16|PCBP3|pc|chr21:45858936:45859003:+	0	+
#Deleted in new
chr21	45859701	45859777	ENSG00000183570.16|PCBP3|pc|chr21:45859701:45859777:+	0	+
#Deleted in new
chr21	45893876	45894017	ENSG00000183570.16|PCBP3|pc|chr21:45893876:45894017:+	0	+
#Duplicated in new
chr21	45917587	45918647	ENSG00000280604.1|AJ239328.1|lncRNA|chr21:45917587:45918647:+	0	+
#Deleted in new
chr21	46037051	46037898	ENSG00000224413.1|AP001476.1|lncRNA|chr21:46037051:46037898:+	0	+
#Deleted in new
chr21	46038456	46039807	ENSG00000224413.1|AP001476.1|lncRNA|chr21:46038456:46039807:+	0	+
#Deleted in new
chr21	46052595	46052703	ENSG00000228235.1|AP001476.3|lncRNA|chr21:46052595:46052703:+	0	+
#Deleted in new
chr21	46056515	46056592	ENSG00000226115.1|AP001476.2|lncRNA|chr21:46056515:46056592:+	0	+
#Deleted in new
chr21	46057289	46057567	ENSG00000226115.1|AP001476.2|lncRNA|chr21:46057289:46057567:+	0	+
#Deleted in new
chr21	46093263	46093876	ENSG00000227438.1|AP001471.1|lncRNA|chr21:46093263:46093876:-	0	-
#Deleted in new
chr21	46097471	46097530	ENSG00000227438.1|AP001471.1|lncRNA|chr21:46097471:46097530:-	0	-
#Deleted in new
chr21	46098796	46099147	ENSG00000142173.14|COL6A2|pc|chr21:46098796:46099147:+	0	+
#Deleted in new
chr21	46136261	46136494	ENSG00000160282.13|FTCD|pc|chr21:46136261:46136494:-	0	-
#Deleted in new
chr21	46142108	46142669	ENSG00000160282.13|FTCD|pc|chr21:46142108:46142669:-	0	-
#Deleted in new
chr21	46142108	46142741	ENSG00000160282.13|FTCD|pc|chr21:46142108:46142741:-	0	-
#Partially deleted in new
chr21	46146265	46146604	ENSG00000160282.13|FTCD|pc|chr21:46146265:46146604:-	0	-
#Partially deleted in new
chr21	46146790	46146926	ENSG00000160282.13|FTCD|pc|chr21:46146790:46146926:-	0	-
#Partially deleted in new
chr21	46152293	46152647	ENSG00000237338.1|FTCD-AS1|lncRNA|chr21:46152293:46152647:+	0	+
#Deleted in new
chr21	46184355	46184459	ENSG00000160284.14|SPATC1L|pc|chr21:46184355:46184459:-	0	-
#Deleted in new
chr21	46184355	46184476	ENSG00000160284.14|SPATC1L|pc|chr21:46184355:46184476:-	0	-
#Deleted in new
chr21	46185078	46185187	ENSG00000228404.1|AP001468.1|lncRNA|chr21:46185078:46185187:+	0	+
#Split in new
chr21	46188445	46191235	ENSG00000160285.14|LSS|pc|chr21:46188445:46191235:-	0	-
#Split in new
chr21	46191880	46193370	ENSG00000160285.14|LSS|pc|chr21:46191880:46193370:-	0	-
#Split in new
chr21	46191880	46193487	ENSG00000160285.14|LSS|pc|chr21:46191880:46193487:-	0	-
#Deleted in new
chr21	46224650	46224834	ENSG00000223901.2|AP001469.1|lncRNA|chr21:46224650:46224834:+	0	+
#Deleted in new
chr21	46225219	46225364	ENSG00000223901.2|AP001469.1|lncRNA|chr21:46225219:46225364:+	0	+
#Deleted in new
chr21	46247634	46247682	ENSG00000228137.1|AP001469.2|lncRNA|chr21:46247634:46247682:+	0	+
#Partially deleted in new
chr21	46249585	46251701	ENSG00000215424.9|MCM3AP-AS1|lncRNA|chr21:46249585:46251701:+	0	+
#Partially deleted in new
chr21	46251811	46252121	ENSG00000239415.1|AP001469.3|lncRNA|chr21:46251811:46252121:-	0	-
#Partially deleted in new
chr21	46252429	46252834	ENSG00000239415.1|AP001469.3|lncRNA|chr21:46252429:46252834:-	0	-
#Partially deleted in new
chr21	46252429	46254133	ENSG00000239415.1|AP001469.3|lncRNA|chr21:46252429:46254133:-	0	-
#Deleted in new
chr21	46285698	46286184	ENSG00000160294.10|MCM3AP|pc|chr21:46285698:46286184:-	0	-
#Deleted in new
chr21	46285802	46285897	ENSG00000160294.10|MCM3AP|pc|chr21:46285802:46285897:-	0	-
#Deleted in new
chr21	46286150	46286297	ENSG00000160294.10|MCM3AP|pc|chr21:46286150:46286297:-	0	-
#Deleted in new
chr21	46286336	46286415	ENSG00000182362.13|YBEY|pc|chr21:46286336:46286415:+	0	+
#Deleted in new
chr21	46286354	46286415	ENSG00000182362.13|YBEY|pc|chr21:46286354:46286415:+	0	+
#Deleted in new
chr21	46286383	46286415	ENSG00000182362.13|YBEY|pc|chr21:46286383:46286415:+	0	+
#Deleted in new
chr21	46286383	46286737	ENSG00000182362.13|YBEY|pc|chr21:46286383:46286737:+	0	+
#Deleted in new
chr21	46286453	46286737	ENSG00000182362.13|YBEY|pc|chr21:46286453:46286737:+	0	+
#Partially deleted in new
chr21	46286644	46286743	ENSG00000182362.13|YBEY|pc|chr21:46286644:46286743:+	0	+
#Deleted in new
chr21	46300180	46300236	ENSG00000160298.17|C21orf58|pc|chr21:46300180:46300236:-	0	-
#Deleted in new
chr21	46300353	46300794	ENSG00000160298.17|C21orf58|pc|chr21:46300353:46300794:-	0	-
#Deleted in new
chr21	46300429	46300794	ENSG00000160298.17|C21orf58|pc|chr21:46300429:46300794:-	0	-
#Deleted in new
chr21	46300510	46300725	ENSG00000160298.17|C21orf58|pc|chr21:46300510:46300725:-	0	-
#Deleted in new
chr21	46301129	46301713	ENSG00000160298.17|C21orf58|pc|chr21:46301129:46301713:-	0	-
#Partially deleted in new
chr21	46301129	46302154	ENSG00000160298.17|C21orf58|pc|chr21:46301129:46302154:-	0	-
#Partially deleted in new
chr21	46301133	46302154	ENSG00000160298.17|C21orf58|pc|chr21:46301133:46302154:-	0	-
#Partially deleted in new
chr21	46314870	46315049	ENSG00000160298.17|C21orf58|pc|chr21:46314870:46315049:-	0	-
#Partially deleted in new
chr21	46314870	46315547	ENSG00000160298.17|C21orf58|pc|chr21:46314870:46315547:-	0	-
#Deleted in new
chr21	46318784	46318961	ENSG00000160298.17|C21orf58|pc|chr21:46318784:46318961:-	0	-
#Deleted in new
chr21	46320636	46320825	ENSG00000160298.17|C21orf58|pc|chr21:46320636:46320825:-	0	-
#Deleted in new
chr21	46322638	46323869	ENSG00000160298.17|C21orf58|pc|chr21:46322638:46323869:-	0	-
#Deleted in new
chr21	46322638	46323875	ENSG00000160298.17|C21orf58|pc|chr21:46322638:46323875:-	0	-
#Deleted in new
chr21	46323136	46323857	ENSG00000160298.17|C21orf58|pc|chr21:46323136:46323857:-	0	-
#Deleted in new
chr21	46324887	46325210	ENSG00000160299.16|PCNT|pc|chr21:46324887:46325210:+	0	+
#Deleted in new
chr21	46334396	46334768	ENSG00000160299.16|PCNT|pc|chr21:46334396:46334768:+	0	+
#Deleted in new
chr21	46348238	46348325	ENSG00000160299.16|PCNT|pc|chr21:46348238:46348325:+	0	+
#Deleted in new
chr21	46355451	46355626	ENSG00000160299.16|PCNT|pc|chr21:46355451:46355626:+	0	+
#Deleted in new
chr21	46356973	46357191	ENSG00000160299.16|PCNT|pc|chr21:46356973:46357191:+	0	+
#Deleted in new
chr21	46381693	46381840	ENSG00000160299.16|PCNT|pc|chr21:46381693:46381840:+	0	+
#Deleted in new
chr21	46431258	46431329	ENSG00000160299.16|PCNT|pc|chr21:46431258:46431329:+	0	+
#Deleted in new
chr21	46463065	46463228	ENSG00000223692.1|DIP2A-IT1|lncRNA|chr21:46463065:46463228:+	0	+
#Deleted in new
chr21	46469145	46469306	ENSG00000223692.1|DIP2A-IT1|lncRNA|chr21:46469145:46469306:+	0	+
#Deleted in new
chr2	14649315	14649453	ENSG00000162981.13|FAM84A|pc|chr2:14649315:14649453:+	0	+
#Deleted in new
chr2	14649538	14649641	ENSG00000162981.13|FAM84A|pc|chr2:14649538:14649641:+	0	+
#Partially deleted in new
chr21	46552910	46554292	ENSG00000160305.17|DIP2A|pc|chr21:46552910:46554292:+	0	+
#Partially deleted in new
chr21	46561284	46561805	ENSG00000160305.17|DIP2A|pc|chr21:46561284:46561805:+	0	+
#Partially deleted in new
chr21	46635166	46635763	ENSG00000160310.17|PRMT2|pc|chr21:46635166:46635763:+	0	+
#Deleted in new
chr21	46651805	46652318	ENSG00000160310.17|PRMT2|pc|chr21:46651805:46652318:+	0	+
#Partially deleted in new
chr21	46658744	46659430	ENSG00000160310.17|PRMT2|pc|chr21:46658744:46659430:+	0	+
#Partially deleted in new
chr21	46658799	46659430	ENSG00000160310.17|PRMT2|pc|chr21:46658799:46659430:+	0	+
#Partially deleted in new
chr2	146838039	146838205	ENSG00000231040.1|LINC01911|lncRNA|chr2:146838039:146838205:+	0	+
#Deleted in new
chr2	146846628	146846818	ENSG00000231040.1|LINC01911|lncRNA|chr2:146846628:146846818:+	0	+
#Deleted in new
chr2	146849144	146849313	ENSG00000231040.1|LINC01911|lncRNA|chr2:146849144:146849313:+	0	+
#Deleted in new
chr2	146850255	146850310	ENSG00000231040.1|LINC01911|lncRNA|chr2:146850255:146850310:+	0	+
#Deleted in new
chr2	146879908	146879949	ENSG00000227902.2|AC062032.1|lncRNA|chr2:146879908:146879949:+	0	+
#Deleted in new
chr2	146880781	146880899	ENSG00000227902.2|AC062032.1|lncRNA|chr2:146880781:146880899:+	0	+
#Deleted in new
chr2	146888086	146888173	ENSG00000227902.2|AC062032.1|lncRNA|chr2:146888086:146888173:+	0	+
#Deleted in new
chr2	147951447	147951638	ENSG00000115947.13|ORC4|pc|chr2:147951447:147951638:-	0	-
#Deleted in new
chr2	147981927	147982081	ENSG00000115947.13|ORC4|pc|chr2:147981927:147982081:-	0	-
#Deleted in new
chr2	148041205	148041365	ENSG00000204406.12|MBD5|pc|chr2:148041205:148041365:+	0	+
#Deleted in new
chr2	148053932	148054050	ENSG00000204406.12|MBD5|pc|chr2:148053932:148054050:+	0	+
#Deleted in new
chr2	148054390	148054449	ENSG00000204406.12|MBD5|pc|chr2:148054390:148054449:+	0	+
#Deleted in new
chr2	148055452	148056079	ENSG00000204406.12|MBD5|pc|chr2:148055452:148056079:+	0	+
#Deleted in new
chr2	148055452	148056135	ENSG00000204406.12|MBD5|pc|chr2:148055452:148056135:+	0	+
#Deleted in new
chr2	148062153	148062577	ENSG00000281772.1|AC019226.2|lncRNA|chr2:148062153:148062577:+	0	+
#Deleted in new
chr2	148068561	148068593	ENSG00000204406.12|MBD5|pc|chr2:148068561:148068593:+	0	+
#Deleted in new
chr2	148068571	148068593	ENSG00000204406.12|MBD5|pc|chr2:148068571:148068593:+	0	+
#Deleted in new
chr2	148070872	148072063	ENSG00000204406.12|MBD5|pc|chr2:148070872:148072063:+	0	+
#Deleted in new
chr2	148178699	148178793	ENSG00000204406.12|MBD5|pc|chr2:148178699:148178793:+	0	+
#Deleted in new
chr2	148196207	148196235	ENSG00000204406.12|MBD5|pc|chr2:148196207:148196235:+	0	+
#Deleted in new
chr2	148219946	148220033	ENSG00000204406.12|MBD5|pc|chr2:148219946:148220033:+	0	+
#Deleted in new
chr2	148264178	148265070	ENSG00000204406.12|MBD5|pc|chr2:148264178:148265070:+	0	+
#Deleted in new
chr2	148330482	148330534	ENSG00000204406.12|MBD5|pc|chr2:148330482:148330534:+	0	+
#Deleted in new
chr2	148330505	148330600	ENSG00000204406.12|MBD5|pc|chr2:148330505:148330600:+	0	+
#Partially deleted in new
chr2	148346021	148347611	ENSG00000204406.12|MBD5|pc|chr2:148346021:148347611:+	0	+
#Deleted in new
chr2	148393300	148393375	ENSG00000204406.12|MBD5|pc|chr2:148393300:148393375:+	0	+
#Partially deleted in new
chr2	148691541	148692833	ENSG00000135999.11|EPC2|pc|chr2:148691541:148692833:+	0	+
#Deleted in new
chr2	148691620	148692248	ENSG00000135999.11|EPC2|pc|chr2:148691620:148692248:+	0	+
#Partially deleted in new
chr2	14890528	14890795	ENSG00000235127.1|AC068286.1|lncRNA|chr2:14890528:14890795:-	0	-
#Partially deleted in new
chr2	149020175	149020382	ENSG00000168280.16|KIF5C|pc|chr2:149020175:149020382:+	0	+
#Deleted in new
chr2	14907572	14907664	ENSG00000235127.1|AC068286.1|lncRNA|chr2:14907572:14907664:-	0	-
#Deleted in new
chr2	149206018	149206195	ENSG00000150556.16|LYPD6B|pc|chr2:149206018:149206195:+	0	+
#Deleted in new
chr2	149464163	149464475	ENSG00000187123.14|LYPD6|pc|chr2:149464163:149464475:+	0	+
#Partially deleted in new
chr2	149572229	149572331	ENSG00000168288.12|MMADHC|pc|chr2:149572229:149572331:-	0	-
#Deleted in new
chr2	149769319	149769406	ENSG00000162947.4|LINC01931|lncRNA|chr2:149769319:149769406:-	0	-
#Deleted in new
chr2	149804181	149804220	ENSG00000162947.4|LINC01931|lncRNA|chr2:149804181:149804220:-	0	-
#Deleted in new
chr2	149859042	149859191	ENSG00000162947.4|LINC01931|lncRNA|chr2:149859042:149859191:-	0	-
#Deleted in new
chr2	150171422	150171603	ENSG00000230645.1|LINC01818|lncRNA|chr2:150171422:150171603:+	0	+
#Deleted in new
chr2	150245582	150245687	ENSG00000231420.1|LINC01817|lncRNA|chr2:150245582:150245687:-	0	-
#Deleted in new
chr2	150256858	150257007	ENSG00000231420.1|LINC01817|lncRNA|chr2:150256858:150257007:-	0	-
#Deleted in new
chr2	150300972	150301080	ENSG00000230645.1|LINC01818|lncRNA|chr2:150300972:150301080:+	0	+
#Deleted in new
chr21	5032052	5032217	ENSG00000277117.4|FP565260.3|pc|chr21:5032052:5032217:+	0	+
#Deleted in new
chr21	5033407	5033443	ENSG00000277117.4|FP565260.3|pc|chr21:5033407:5033443:+	0	+
#Partially deleted in new
chr21	5034581	5036125	ENSG00000277117.4|FP565260.3|pc|chr21:5034581:5036125:+	0	+
#Deleted in new
chr2	1503776	1503825	ENSG00000115705.20|TPO|pc|chr2:1503776:1503825:+	0	+
#Deleted in new
chr21	5040584	5040661	ENSG00000277117.4|FP565260.3|pc|chr21:5040584:5040661:+	0	+
#Deleted in new
chr21	5040584	5040666	ENSG00000277117.4|FP565260.3|pc|chr21:5040584:5040666:+	0	+
#Partially deleted in new
chr2	150552531	150553326	ENSG00000236049.1|LINC01920|lncRNA|chr2:150552531:150553326:-	0	-
#Deleted in new
chr2	150572162	150572221	ENSG00000236049.1|LINC01920|lncRNA|chr2:150572162:150572221:-	0	-
#Deleted in new
chr2	150595101	150595590	ENSG00000232359.1|AC104777.2|lncRNA|chr2:150595101:150595590:-	0	-
#Partially deleted in new
chr2	150628896	150629121	ENSG00000224048.5|AC104777.1|lncRNA|chr2:150628896:150629121:+	0	+
#Partially deleted in new
chr2	150628991	150629121	ENSG00000224048.5|AC104777.1|lncRNA|chr2:150628991:150629121:+	0	+
#Partially deleted in new
chr2	150629054	150629121	ENSG00000224048.5|AC104777.1|lncRNA|chr2:150629054:150629121:+	0	+
#Deleted in new
chr2	150632266	150632396	ENSG00000224048.5|AC104777.1|lncRNA|chr2:150632266:150632396:+	0	+
#Deleted in new
chr2	150632307	150632396	ENSG00000224048.5|AC104777.1|lncRNA|chr2:150632307:150632396:+	0	+
#Deleted in new
chr21	5073457	5073685	ENSG00000279687.1|FP565260.5|lncRNA|chr21:5073457:5073685:+	0	+
#Deleted in new
chr21	5079293	5079296	ENSG00000280071.3|FP565260.6|pc|chr21:5079293:5079296:-	0	-
#Deleted in new
chr21	5079683	5079734	ENSG00000280071.3|FP565260.6|pc|chr21:5079683:5079734:-	0	-
#Deleted in new
chr21	5087616	5087867	ENSG00000279687.1|FP565260.5|lncRNA|chr21:5087616:5087867:+	0	+
#Deleted in new
chr2	150982505	150982515	ENSG00000228064.1|AC023469.2|lncRNA|chr2:150982505:150982515:+	0	+
#Deleted in new
chr2	151001219	151001390	ENSG00000222031.1|AC023469.1|lncRNA|chr2:151001219:151001390:-	0	-
#Deleted in new
chr2	151003089	151003474	ENSG00000228064.1|AC023469.2|lncRNA|chr2:151003089:151003474:+	0	+
#Deleted in new
chr2	151043768	151043873	ENSG00000222031.1|AC023469.1|lncRNA|chr2:151043768:151043873:-	0	-
#Partially deleted in new
chr2	151117954	151118374	ENSG00000236885.1|AC018731.1|lncRNA|chr2:151117954:151118374:-	0	-
#Deleted in new
chr2	151134703	151134769	ENSG00000236885.1|AC018731.1|lncRNA|chr2:151134703:151134769:-	0	-
#Deleted in new
chr21	5120633	5120889	ENSG00000280071.3|FP565260.6|pc|chr21:5120633:5120889:-	0	-
#Deleted in new
chr21	5120633	5121111	ENSG00000280071.3|FP565260.6|pc|chr21:5120633:5121111:-	0	-
#Deleted in new
chr21	5120635	5120889	ENSG00000280071.3|FP565260.6|pc|chr21:5120635:5120889:-	0	-
#Deleted in new
chr21	5122012	5122200	ENSG00000280071.3|FP565260.6|pc|chr21:5122012:5122200:-	0	-
#Partially deleted in new
chr2	151247939	151251664	ENSG00000184898.6|RBM43|pc|chr2:151247939:151251664:-	0	-
#Partially deleted in new
chr2	151260984	151261509	ENSG00000184898.6|RBM43|pc|chr2:151260984:151261509:-	0	-
#Deleted in new
chr21	5127083	5127143	ENSG00000280071.3|FP565260.6|pc|chr21:5127083:5127143:-	0	-
#Partially deleted in new
chr2	151288890	151289077	ENSG00000123609.10|NMI|pc|chr2:151288890:151289077:-	0	-
#Deleted in new
chr2	151289592	151289863	ENSG00000123609.10|NMI|pc|chr2:151289592:151289863:-	0	-
#Deleted in new
chr2	151289592	151289894	ENSG00000123609.10|NMI|pc|chr2:151289592:151289894:-	0	-
#Partially deleted in new
chr2	151289592	151290057	ENSG00000123609.10|NMI|pc|chr2:151289592:151290057:-	0	-
#Deleted in new
chr2	1513432	1513604	ENSG00000115705.20|TPO|pc|chr2:1513432:1513604:+	0	+
#Partially deleted in new
chr21	5135934	5137474	ENSG00000275464.4|FP565260.1|pc|chr21:5135934:5137474:-	0	-
#Deleted in new
chr21	5137877	5137939	ENSG00000275464.4|FP565260.1|pc|chr21:5137877:5137939:-	0	-
#Deleted in new
chr2	151423232	151423760	ENSG00000080345.17|RIF1|pc|chr2:151423232:151423760:+	0	+
#Deleted in new
chr21	5144423	5144724	ENSG00000275464.4|FP565260.1|pc|chr21:5144423:5144724:-	0	-
#Deleted in new
chr21	5145237	5145445	ENSG00000275464.4|FP565260.1|pc|chr21:5145237:5145445:-	0	-
#Deleted in new
chr2	151483198	151483335	ENSG00000080345.17|RIF1|pc|chr2:151483198:151483335:+	0	+
#Deleted in new
chr2	151486276	151486756	ENSG00000080345.17|RIF1|pc|chr2:151486276:151486756:+	0	+
#Duplicated in new
chr2	151497785	151498213	ENSG00000080345.17|RIF1|pc|chr2:151497785:151498213:+	0	+
#Duplicated in new
chr2	151497785	151498215	ENSG00000080345.17|RIF1|pc|chr2:151497785:151498215:+	0	+
#Deleted in new
chr21	5154059	5154247	ENSG00000275464.4|FP565260.1|pc|chr21:5154059:5154247:-	0	-
#Deleted in new
chr21	5154360	5154527	ENSG00000275464.4|FP565260.1|pc|chr21:5154360:5154527:-	0	-
#Partially deleted in new
chr2	151689197	151690825	ENSG00000183091.19|NEB|pc|chr2:151689197:151690825:-	0	-
#Deleted in new
chr2	151788983	151789247	ENSG00000162980.16|ARL5A|pc|chr2:151788983:151789247:-	0	-
#Deleted in new
chr2	151789077	151789247	ENSG00000162980.16|ARL5A|pc|chr2:151789077:151789247:-	0	-
#Deleted in new
chr2	151789634	151789882	ENSG00000162980.16|ARL5A|pc|chr2:151789634:151789882:-	0	-
#Deleted in new
chr2	151789751	151789882	ENSG00000162980.16|ARL5A|pc|chr2:151789751:151789882:-	0	-
#Deleted in new
chr2	151791757	151791790	ENSG00000162980.16|ARL5A|pc|chr2:151791757:151791790:-	0	-
#Deleted in new
chr2	151791757	151791908	ENSG00000162980.16|ARL5A|pc|chr2:151791757:151791908:-	0	-
#Deleted in new
chr2	151791757	151792086	ENSG00000162980.16|ARL5A|pc|chr2:151791757:151792086:-	0	-
#Deleted in new
chr2	151841667	151841739	ENSG00000182389.19|CACNB4|pc|chr2:151841667:151841739:-	0	-
#Deleted in new
chr2	151841667	151841739	ENSG00000283228.1|AC068547.1|pc|chr2:151841667:151841739:-	0	-
#Deleted in new
chr2	151874919	151874970	ENSG00000182389.19|CACNB4|pc|chr2:151874919:151874970:-	0	-
#Deleted in new
chr2	152048515	152048789	ENSG00000182389.19|CACNB4|pc|chr2:152048515:152048789:-	0	-
#Partially deleted in new
chr2	152108815	152109202	ENSG00000225214.1|AC079790.1|lncRNA|chr2:152108815:152109202:+	0	+
#Split in new
chr2	152131881	152132168	ENSG00000115145.9|STAM2|pc|chr2:152131881:152132168:-	0	-
#Partially deleted in new
chr2	152144737	152144836	ENSG00000115145.9|STAM2|pc|chr2:152144737:152144836:-	0	-
#Partially deleted in new
chr2	152694062	152694622	ENSG00000196504.15|PRPF40A|pc|chr2:152694062:152694622:-	0	-
#Partially deleted in new
chr2	152717892	152717995	ENSG00000177917.10|ARL6IP6|pc|chr2:152717892:152717995:+	0	+
#Deleted in new
chr2	152732530	152732580	ENSG00000177917.10|ARL6IP6|pc|chr2:152732530:152732580:+	0	+
#Deleted in new
chr2	153171986	153172106	ENSG00000224612.1|AC079150.1|lncRNA|chr2:153171986:153172106:-	0	-
#Deleted in new
chr2	153187451	153187569	ENSG00000224612.1|AC079150.1|lncRNA|chr2:153187451:153187569:-	0	-
#Deleted in new
chr2	153354224	153354281	ENSG00000227708.1|LINC01850|lncRNA|chr2:153354224:153354281:+	0	+
#Deleted in new
chr2	153449670	153449818	ENSG00000227400.2|AC012501.1|lncRNA|chr2:153449670:153449818:-	0	-
#Deleted in new
chr2	153449670	153449820	ENSG00000227400.2|AC012501.1|lncRNA|chr2:153449670:153449820:-	0	-
#Deleted in new
chr2	153592859	153593288	ENSG00000227400.2|AC012501.1|lncRNA|chr2:153592859:153593288:-	0	-
#Deleted in new
chr2	153926287	153926339	ENSG00000144278.14|GALNT13|pc|chr2:153926287:153926339:+	0	+
#Partially deleted in new
chr2	1540593	1543711	ENSG00000115705.20|TPO|pc|chr2:1540593:1543711:+	0	+
#Deleted in new
chr2	1542420	1542474	ENSG00000115705.20|TPO|pc|chr2:1542420:1542474:+	0	+
#Deleted in new
chr2	1542420	1542529	ENSG00000115705.20|TPO|pc|chr2:1542420:1542529:+	0	+
#Deleted in new
chr2	1542420	1542649	ENSG00000115705.20|TPO|pc|chr2:1542420:1542649:+	0	+
#Deleted in new
chr2	1542420	1542660	ENSG00000115705.20|TPO|pc|chr2:1542420:1542660:+	0	+
#Deleted in new
chr2	1542420	1542726	ENSG00000115705.20|TPO|pc|chr2:1542420:1542726:+	0	+
#Deleted in new
chr2	1542420	1542727	ENSG00000115705.20|TPO|pc|chr2:1542420:1542727:+	0	+
#Deleted in new
chr2	1542420	1542822	ENSG00000115705.20|TPO|pc|chr2:1542420:1542822:+	0	+
#Partially deleted in new
chr2	154435852	154437850	ENSG00000224675.1|AC009227.1|lncRNA|chr2:154435852:154437850:-	0	-
#Partially deleted in new
chr2	154454537	154454642	ENSG00000224675.1|AC009227.1|lncRNA|chr2:154454537:154454642:-	0	-
#Partially deleted in new
chr2	154460563	154460820	ENSG00000238004.1|AC009227.2|lncRNA|chr2:154460563:154460820:+	0	+
#Deleted in new
chr2	1546664	1546935	ENSG00000228613.1|AC141930.1|lncRNA|chr2:1546664:1546935:-	0	-
#Deleted in new
chr21	5499150	5499809	ENSG00000279094.3|LINC01670|lncRNA|chr21:5499150:5499809:-	0	-
#Deleted in new
chr21	5499154	5499967	ENSG00000279094.3|LINC01670|lncRNA|chr21:5499154:5499967:-	0	-
#Deleted in new
chr21	5499556	5500101	ENSG00000279094.3|LINC01670|lncRNA|chr21:5499556:5500101:-	0	-
#Deleted in new
chr21	5499998	5500101	ENSG00000279094.3|LINC01670|lncRNA|chr21:5499998:5500101:-	0	-
#Deleted in new
chr21	5500066	5500101	ENSG00000279094.3|LINC01670|lncRNA|chr21:5500066:5500101:-	0	-
#Deleted in new
chr21	5502368	5502497	ENSG00000279094.3|LINC01670|lncRNA|chr21:5502368:5502497:-	0	-
#Deleted in new
chr21	5502368	5502542	ENSG00000279094.3|LINC01670|lncRNA|chr21:5502368:5502542:-	0	-
#Deleted in new
chr2	1552444	1552554	ENSG00000283766.1|AC141930.3|lncRNA|chr2:1552444:1552554:+	0	+
#Deleted in new
chr2	1552737	1552857	ENSG00000283766.1|AC141930.3|lncRNA|chr2:1552737:1552857:+	0	+
#Deleted in new
chr2	1554169	1554701	ENSG00000283766.1|AC141930.3|lncRNA|chr2:1554169:1554701:+	0	+
#Deleted in new
chr21	5553636	5553838	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5553636:5553838:+	0	+
#Deleted in new
chr21	5553658	5553838	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5553658:5553838:+	0	+
#Deleted in new
chr21	5553668	5553838	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5553668:5553838:+	0	+
#Deleted in new
chr21	5553678	5553838	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5553678:5553838:+	0	+
#Deleted in new
chr21	5553702	5553838	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5553702:5553838:+	0	+
#Deleted in new
chr21	5553706	5553838	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5553706:5553838:+	0	+
#Deleted in new
chr21	5553709	5553838	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5553709:5553838:+	0	+
#Deleted in new
chr21	5553716	5553838	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5553716:5553838:+	0	+
#Deleted in new
chr2	15564169	15564274	ENSG00000234022.1|AC008278.2|lncRNA|chr2:15564169:15564274:+	0	+
#Deleted in new
chr2	15565064	15565198	ENSG00000234022.1|AC008278.2|lncRNA|chr2:15565064:15565198:+	0	+
#Deleted in new
chr21	5565962	5566183	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5565962:5566183:+	0	+
#Deleted in new
chr21	5566124	5566183	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5566124:5566183:+	0	+
#Deleted in new
chr2	15573483	15573553	ENSG00000234022.1|AC008278.2|lncRNA|chr2:15573483:15573553:+	0	+
#Deleted in new
chr2	15573768	15573868	ENSG00000234022.1|AC008278.2|lncRNA|chr2:15573768:15573868:+	0	+
#Deleted in new
chr21	5579669	5579808	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5579669:5579808:+	0	+
#Deleted in new
chr21	5582227	5585987	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5582227:5585987:+	0	+
#Deleted in new
chr21	5583465	5585257	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5583465:5585257:+	0	+
#Deleted in new
chr21	5584809	5584975	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5584809:5584975:+	0	+
#Deleted in new
chr21	5584809	5585063	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5584809:5585063:+	0	+
#Deleted in new
chr21	5585777	5585987	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5585777:5585987:+	0	+
#Deleted in new
chr21	5585822	5585987	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5585822:5585987:+	0	+
#Deleted in new
chr21	5585822	5586369	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5585822:5586369:+	0	+
#Deleted in new
chr21	5586444	5586499	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5586444:5586499:+	0	+
#Deleted in new
chr21	5588136	5588184	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5588136:5588184:+	0	+
#Deleted in new
chr21	5588136	5588646	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5588136:5588646:+	0	+
#Deleted in new
chr21	5588136	5588786	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5588136:5588786:+	0	+
#Deleted in new
chr21	5588136	5592004	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5588136:5592004:+	0	+
#Deleted in new
chr21	5589346	5589528	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5589346:5589528:+	0	+
#Deleted in new
chr21	5590018	5590178	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5590018:5590178:+	0	+
#Deleted in new
chr21	5590018	5590200	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5590018:5590200:+	0	+
#Deleted in new
chr21	5590018	5590683	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5590018:5590683:+	0	+
#Deleted in new
chr21	5590018	5591228	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5590018:5591228:+	0	+
#Deleted in new
chr21	5590018	5591234	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5590018:5591234:+	0	+
#Deleted in new
chr21	5590018	5592003	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5590018:5592003:+	0	+
#Deleted in new
chr2	156011529	156011852	ENSG00000226383.6|LINC01876|lncRNA|chr2:156011529:156011852:-	0	-
#Deleted in new
chr2	156011616	156011852	ENSG00000226383.6|LINC01876|lncRNA|chr2:156011616:156011852:-	0	-
#Deleted in new
chr2	156022671	156022817	ENSG00000226383.6|LINC01876|lncRNA|chr2:156022671:156022817:-	0	-
#Deleted in new
chr2	156022685	156022817	ENSG00000226383.6|LINC01876|lncRNA|chr2:156022685:156022817:-	0	-
#Deleted in new
chr2	156022780	156022817	ENSG00000226383.6|LINC01876|lncRNA|chr2:156022780:156022817:-	0	-
#Deleted in new
chr2	156024465	156024607	ENSG00000226383.6|LINC01876|lncRNA|chr2:156024465:156024607:-	0	-
#Deleted in new
chr2	156024465	156024613	ENSG00000226383.6|LINC01876|lncRNA|chr2:156024465:156024613:-	0	-
#Deleted in new
chr2	156024469	156024576	ENSG00000226383.6|LINC01876|lncRNA|chr2:156024469:156024576:-	0	-
#Deleted in new
chr2	156024469	156024607	ENSG00000226383.6|LINC01876|lncRNA|chr2:156024469:156024607:-	0	-
#Deleted in new
chr2	156024484	156024576	ENSG00000226383.6|LINC01876|lncRNA|chr2:156024484:156024576:-	0	-
#Deleted in new
chr2	156024484	156024607	ENSG00000226383.6|LINC01876|lncRNA|chr2:156024484:156024607:-	0	-
#Deleted in new
chr21	5614751	5614880	ENSG00000274333.4|CU633967.1|lncRNA|chr21:5614751:5614880:+	0	+
#Deleted in new
chr2	156150484	156150602	ENSG00000226383.6|LINC01876|lncRNA|chr2:156150484:156150602:-	0	-
#Deleted in new
chr2	156205381	156205438	ENSG00000226383.6|LINC01876|lncRNA|chr2:156205381:156205438:-	0	-
#Deleted in new
chr2	156227966	156228004	ENSG00000226383.6|LINC01876|lncRNA|chr2:156227966:156228004:-	0	-
#Deleted in new
chr2	156252035	156252128	ENSG00000226383.6|LINC01876|lncRNA|chr2:156252035:156252128:-	0	-
#Deleted in new
chr2	156252035	156252131	ENSG00000226383.6|LINC01876|lncRNA|chr2:156252035:156252131:-	0	-
#Deleted in new
chr2	156254777	156254905	ENSG00000226383.6|LINC01876|lncRNA|chr2:156254777:156254905:-	0	-
#Deleted in new
chr2	156254777	156254915	ENSG00000226383.6|LINC01876|lncRNA|chr2:156254777:156254915:-	0	-
#Deleted in new
chr2	156254777	156254918	ENSG00000226383.6|LINC01876|lncRNA|chr2:156254777:156254918:-	0	-
#Deleted in new
chr2	156254777	156254929	ENSG00000226383.6|LINC01876|lncRNA|chr2:156254777:156254929:-	0	-
#Deleted in new
chr2	156254777	156254931	ENSG00000226383.6|LINC01876|lncRNA|chr2:156254777:156254931:-	0	-
#Deleted in new
chr2	156254777	156254950	ENSG00000226383.6|LINC01876|lncRNA|chr2:156254777:156254950:-	0	-
#Deleted in new
chr2	156305107	156305427	ENSG00000282440.1|AC074099.1|lncRNA|chr2:156305107:156305427:-	0	-
#Deleted in new
chr2	156501784	156501844	ENSG00000115159.15|GPD2|pc|chr2:156501784:156501844:+	0	+
#Deleted in new
chr2	156501784	156501879	ENSG00000115159.15|GPD2|pc|chr2:156501784:156501879:+	0	+
#Deleted in new
chr2	156501784	156501881	ENSG00000115159.15|GPD2|pc|chr2:156501784:156501881:+	0	+
#Deleted in new
chr2	15680270	15680484	ENSG00000224194.1|AC008278.1|lncRNA|chr2:15680270:15680484:-	0	-
#Deleted in new
chr2	15700389	15700535	ENSG00000231031.6|LINC01804|lncRNA|chr2:15700389:15700535:+	0	+
#Deleted in new
chr2	15700400	15700535	ENSG00000231031.6|LINC01804|lncRNA|chr2:15700400:15700535:+	0	+
#Deleted in new
chr2	15700530	15700535	ENSG00000231031.6|LINC01804|lncRNA|chr2:15700530:15700535:+	0	+
#Deleted in new
chr2	15701228	15701375	ENSG00000231031.6|LINC01804|lncRNA|chr2:15701228:15701375:+	0	+
#Partially deleted in new
chr21	5703181	5705637	ENSG00000279186.1|FP236315.2|lncRNA|chr21:5703181:5705637:-	0	-
#Deleted in new
chr21	5705344	5705453	ENSG00000279784.1|FP236315.3|lncRNA|chr21:5705344:5705453:+	0	+
#Deleted in new
chr21	5709153	5709456	ENSG00000279064.1|FP236315.1|lncRNA|chr21:5709153:5709456:-	0	-
#Deleted in new
chr2	15715412	15715529	ENSG00000231031.6|LINC01804|lncRNA|chr2:15715412:15715529:+	0	+
#Deleted in new
chr2	15715412	15715631	ENSG00000231031.6|LINC01804|lncRNA|chr2:15715412:15715631:+	0	+
#Deleted in new
chr2	1572553	1572997	ENSG00000231482.2|AC141930.2|lncRNA|chr2:1572553:1572997:-	0	-
#Deleted in new
chr2	157324117	157324269	ENSG00000136541.14|ERMN|pc|chr2:157324117:157324269:-	0	-
#Deleted in new
chr2	157324146	157324269	ENSG00000136541.14|ERMN|pc|chr2:157324146:157324269:-	0	-
#Deleted in new
chr2	15743488	15743523	ENSG00000231031.6|LINC01804|lncRNA|chr2:15743488:15743523:+	0	+
#Deleted in new
chr2	15744225	15744339	ENSG00000231031.6|LINC01804|lncRNA|chr2:15744225:15744339:+	0	+
#Deleted in new
chr2	157725707	157726190	ENSG00000234584.1|AC019186.1|lncRNA|chr2:157725707:157726190:-	0	-
#Deleted in new
chr2	157819402	157819489	ENSG00000115170.13|ACVR1|pc|chr2:157819402:157819489:-	0	-
#Deleted in new
chr2	157826527	157826646	ENSG00000115170.13|ACVR1|pc|chr2:157826527:157826646:-	0	-
#Deleted in new
chr2	158015800	158015886	ENSG00000007001.12|UPP2|pc|chr2:158015800:158015886:+	0	+
#Deleted in new
chr2	1580200	1580311	ENSG00000231482.2|AC141930.2|lncRNA|chr2:1580200:1580311:-	0	-
#Deleted in new
chr2	158166649	158166723	ENSG00000227480.2|CCDC148-AS1|lncRNA|chr2:158166649:158166723:+	0	+
#Deleted in new
chr2	158207483	158207617	ENSG00000227480.2|CCDC148-AS1|lncRNA|chr2:158207483:158207617:+	0	+
#Deleted in new
chr2	158288587	158288836	ENSG00000153237.17|CCDC148|pc|chr2:158288587:158288836:-	0	-
#Deleted in new
chr2	158288622	158288836	ENSG00000153237.17|CCDC148|pc|chr2:158288622:158288836:-	0	-
#Deleted in new
chr2	158380820	158380960	ENSG00000153237.17|CCDC148|pc|chr2:158380820:158380960:-	0	-
#Deleted in new
chr2	158588224	158588285	ENSG00000144283.21|PKP4|pc|chr2:158588224:158588285:+	0	+
#Partially deleted in new
chr2	158658336	158661750	ENSG00000204380.4|PKP4-AS1|lncRNA|chr2:158658336:158661750:-	0	-
#Deleted in new
chr2	158734727	158734818	ENSG00000204380.4|PKP4-AS1|lncRNA|chr2:158734727:158734818:-	0	-
#Deleted in new
chr2	158734727	158735002	ENSG00000204380.4|PKP4-AS1|lncRNA|chr2:158734727:158735002:-	0	-
#Deleted in new
chr2	158807671	158807790	ENSG00000163331.11|DAPL1|pc|chr2:158807671:158807790:+	0	+
#Deleted in new
chr2	15921567	15921697	ENSG00000223850.1|MYCNUT|lncRNA|chr2:15921567:15921697:+	0	+
#Deleted in new
chr2	15922020	15922190	ENSG00000233718.7|MYCNOS|lncRNA|chr2:15922020:15922190:-	0	-
#Deleted in new
chr2	159286359	159286592	ENSG00000196151.10|WDSUB1|pc|chr2:159286359:159286592:-	0	-
#Deleted in new
chr2	159286427	159286552	ENSG00000196151.10|WDSUB1|pc|chr2:159286427:159286552:-	0	-
#Deleted in new
chr2	159286582	159286669	ENSG00000196151.10|WDSUB1|pc|chr2:159286582:159286669:-	0	-
#Deleted in new
chr2	159286582	159286703	ENSG00000196151.10|WDSUB1|pc|chr2:159286582:159286703:-	0	-
#Deleted in new
chr2	159286582	159286799	ENSG00000196151.10|WDSUB1|pc|chr2:159286582:159286799:-	0	-
#Deleted in new
chr2	159321857	159322027	ENSG00000123636.17|BAZ2B|pc|chr2:159321857:159322027:-	0	-
#Deleted in new
chr2	15935773	15936017	ENSG00000223850.1|MYCNUT|lncRNA|chr2:15935773:15936017:+	0	+
#Deleted in new
chr2	15936264	15937176	ENSG00000233718.7|MYCNOS|lncRNA|chr2:15936264:15937176:-	0	-
#Deleted in new
chr2	159392100	159392214	ENSG00000223642.7|AC008277.1|lncRNA|chr2:159392100:159392214:+	0	+
#Deleted in new
chr2	159392118	159392207	ENSG00000123636.17|BAZ2B|pc|chr2:159392118:159392207:-	0	-
#Partially deleted in new
chr2	159615295	159615453	ENSG00000224152.1|AC009506.1|lncRNA|chr2:159615295:159615453:+	0	+
#Deleted in new
chr2	159615393	159615424	ENSG00000123636.17|BAZ2B|pc|chr2:159615393:159615424:-	0	-
#Partially deleted in new
chr2	159615393	159615560	ENSG00000123636.17|BAZ2B|pc|chr2:159615393:159615560:-	0	-
#Deleted in new
chr2	159670707	159670813	ENSG00000226266.6|AC009961.1|lncRNA|chr2:159670707:159670813:-	0	-
#Deleted in new
chr2	159670711	159670810	ENSG00000226266.6|AC009961.1|lncRNA|chr2:159670711:159670810:-	0	-
#Deleted in new
chr2	159693200	159695420	ENSG00000226266.6|AC009961.1|lncRNA|chr2:159693200:159695420:-	0	-
#Deleted in new
chr2	159733964	159734082	ENSG00000136536.14|MARCH7|pc|chr2:159733964:159734082:+	0	+
#Partially deleted in new
chr2	159768629	159772053	ENSG00000241399.6|CD302|pc|chr2:159768629:159772053:-	0	-
#Partially deleted in new
chr2	159768852	159772053	ENSG00000241399.6|CD302|pc|chr2:159768852:159772053:-	0	-
#Deleted in new
chr2	159781434	159781532	ENSG00000241399.6|CD302|pc|chr2:159781434:159781532:-	0	-
#Deleted in new
chr2	160178895	160179026	ENSG00000115221.10|ITGB6|pc|chr2:160178895:160179026:-	0	-
#Deleted in new
chr2	160302503	160302824	ENSG00000153250.19|RBMS1|pc|chr2:160302503:160302824:-	0	-
#Partially deleted in new
chr21	6034689	6036093	ENSG00000279769.1|CU639417.3|lncRNA|chr21:6034689:6036093:+	0	+
#Deleted in new
chr21	6060339	6060499	ENSG00000280191.3|LINC01669|lncRNA|chr21:6060339:6060499:+	0	+
#Deleted in new
chr2	16062480	16062567	ENSG00000226764.2|AC010145.1|lncRNA|chr2:16062480:16062567:-	0	-
#Deleted in new
chr21	6062523	6062591	ENSG00000280191.3|LINC01669|lncRNA|chr21:6062523:6062591:+	0	+
#Deleted in new
chr2	16062820	16062885	ENSG00000226764.2|AC010145.1|lncRNA|chr2:16062820:16062885:-	0	-
#Deleted in new
chr21	6066866	6067049	ENSG00000280191.3|LINC01669|lncRNA|chr21:6066866:6067049:+	0	+
#Deleted in new
chr21	6066968	6067049	ENSG00000280191.3|LINC01669|lncRNA|chr21:6066968:6067049:+	0	+
#Deleted in new
chr21	6067704	6068128	ENSG00000280191.3|LINC01669|lncRNA|chr21:6067704:6068128:+	0	+
#Deleted in new
chr21	6073291	6073392	ENSG00000280191.3|LINC01669|lncRNA|chr21:6073291:6073392:+	0	+
#Deleted in new
chr2	16073303	16073442	ENSG00000236289.2|GACAT3|lncRNA|chr2:16073303:16073442:+	0	+
#Deleted in new
chr21	6073347	6073392	ENSG00000280191.3|LINC01669|lncRNA|chr21:6073347:6073392:+	0	+
#Deleted in new
chr2	16073397	16073442	ENSG00000236289.2|GACAT3|lncRNA|chr2:16073397:16073442:+	0	+
#Deleted in new
chr21	6073448	6073673	ENSG00000280191.3|LINC01669|lncRNA|chr21:6073448:6073673:+	0	+
#Deleted in new
chr2	16074166	16074373	ENSG00000236289.2|GACAT3|lncRNA|chr2:16074166:16074373:+	0	+
#Deleted in new
chr21	6074775	6074925	ENSG00000280191.3|LINC01669|lncRNA|chr21:6074775:6074925:+	0	+
#Deleted in new
chr21	6075739	6075807	ENSG00000280191.3|LINC01669|lncRNA|chr21:6075739:6075807:+	0	+
#Deleted in new
chr21	6076003	6076103	ENSG00000280191.3|LINC01669|lncRNA|chr21:6076003:6076103:+	0	+
#Deleted in new
chr21	6076003	6076135	ENSG00000280191.3|LINC01669|lncRNA|chr21:6076003:6076135:+	0	+
#Deleted in new
chr21	6076003	6076153	ENSG00000280191.3|LINC01669|lncRNA|chr21:6076003:6076153:+	0	+
#Deleted in new
chr21	6076003	6076305	ENSG00000280191.3|LINC01669|lncRNA|chr21:6076003:6076305:+	0	+
#Partially deleted in new
chr2	16080897	16081090	ENSG00000236289.2|GACAT3|lncRNA|chr2:16080897:16081090:+	0	+
#Partially deleted in new
chr2	16080897	16081117	ENSG00000236289.2|GACAT3|lncRNA|chr2:16080897:16081117:+	0	+
#Deleted in new
chr21	6081192	6081284	ENSG00000280095.1|CU639417.5|lncRNA|chr21:6081192:6081284:+	0	+
#Deleted in new
chr21	6082201	6082585	ENSG00000280095.1|CU639417.5|lncRNA|chr21:6082201:6082585:+	0	+
#Deleted in new
chr21	6084363	6085145	ENSG00000280179.1|CU639417.6|lncRNA|chr21:6084363:6085145:-	0	-
#Partially deleted in new
chr21	6084380	6087093	ENSG00000280179.1|CU639417.6|lncRNA|chr21:6084380:6087093:-	0	-
#Partially deleted in new
chr2	160849312	160850676	ENSG00000279844.1|AC096656.1|lncRNA|chr2:160849312:160850676:-	0	-
#Partially deleted in new
chr21	6085760	6087093	ENSG00000280179.1|CU639417.6|lncRNA|chr21:6085760:6087093:-	0	-
#Deleted in new
chr21	6089195	6089499	ENSG00000280179.1|CU639417.6|lncRNA|chr21:6089195:6089499:-	0	-
#Deleted in new
chr21	6091366	6091407	ENSG00000280179.1|CU639417.6|lncRNA|chr21:6091366:6091407:-	0	-
#Deleted in new
chr2	16096425	16096926	ENSG00000236989.5|AC130710.1|lncRNA|chr2:16096425:16096926:-	0	-
#Deleted in new
chr2	16097358	16097462	ENSG00000236989.5|AC130710.1|lncRNA|chr2:16097358:16097462:-	0	-
#Deleted in new
chr2	16105414	16105543	ENSG00000236989.5|AC130710.1|lncRNA|chr2:16105414:16105543:-	0	-
#Deleted in new
chr2	161162532	161162890	ENSG00000136560.13|TANK|pc|chr2:161162532:161162890:+	0	+
#Deleted in new
chr2	161163113	161163518	ENSG00000136560.13|TANK|pc|chr2:161163113:161163518:+	0	+
#Deleted in new
chr2	161197336	161197528	ENSG00000136560.13|TANK|pc|chr2:161197336:161197528:+	0	+
#Deleted in new
chr2	161216388	161216442	ENSG00000136560.13|TANK|pc|chr2:161216388:161216442:+	0	+
#Deleted in new
chr2	161254584	161254630	ENSG00000235724.8|AC009299.3|lncRNA|chr2:161254584:161254630:-	0	-
#Deleted in new
chr2	161254584	161254668	ENSG00000235724.8|AC009299.3|lncRNA|chr2:161254584:161254668:-	0	-
#Deleted in new
chr2	161254584	161254680	ENSG00000235724.8|AC009299.3|lncRNA|chr2:161254584:161254680:-	0	-
#Deleted in new
chr2	161452122	161452193	ENSG00000144290.16|SLC4A10|pc|chr2:161452122:161452193:+	0	+
#Deleted in new
chr2	161620914	161620978	ENSG00000144290.16|SLC4A10|pc|chr2:161620914:161620978:+	0	+
#Deleted in new
chr2	161651044	161651290	ENSG00000144290.16|SLC4A10|pc|chr2:161651044:161651290:+	0	+
#Deleted in new
chr2	1617166	1617284	ENSG00000228613.1|AC141930.1|lncRNA|chr2:1617166:1617284:-	0	-
#Deleted in new
chr2	1619716	1620113	ENSG00000228613.1|AC141930.1|lncRNA|chr2:1619716:1620113:-	0	-
#Partially deleted in new
chr2	16203700	16204226	ENSG00000226041.1|AC010745.1|lncRNA|chr2:16203700:16204226:+	0	+
#Deleted in new
chr2	1620509	1621979	ENSG00000203635.2|AC144450.1|lncRNA|chr2:1620509:1621979:-	0	-
#Partially deleted in new
chr2	162074783	162075169	ENSG00000230918.1|AC008063.1|lncRNA|chr2:162074783:162075169:+	0	+
#Partially deleted in new
chr2	162094443	162094854	ENSG00000233397.1|AC008063.2|lncRNA|chr2:162094443:162094854:+	0	+
#Partially deleted in new
chr2	162162989	162163091	ENSG00000236841.7|AC007750.1|lncRNA|chr2:162162989:162163091:+	0	+
#Partially deleted in new
chr2	162209619	162209996	ENSG00000078098.13|FAP|pc|chr2:162209619:162209996:-	0	-
#Deleted in new
chr21	6228965	6230951	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6228965:6230951:-	0	-
#Deleted in new
chr21	6228966	6230951	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6228966:6230951:-	0	-
#Deleted in new
chr21	6230398	6230951	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6230398:6230951:-	0	-
#Deleted in new
chr21	6230665	6230951	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6230665:6230951:-	0	-
#Deleted in new
chr21	6230695	6230951	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6230695:6230951:-	0	-
#Deleted in new
chr21	6232565	6232833	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6232565:6232833:-	0	-
#Deleted in new
chr21	6232596	6232833	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6232596:6232833:-	0	-
#Deleted in new
chr2	162346581	162346665	ENSG00000115271.10|GCA|pc|chr2:162346581:162346665:+	0	+
#Deleted in new
chr21	6234982	6235147	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6234982:6235147:-	0	-
#Deleted in new
chr21	6234982	6235192	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6234982:6235192:-	0	-
#Deleted in new
chr21	6235988	6236160	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6235988:6236160:-	0	-
#Partially deleted in new
chr2	162501984	162502294	ENSG00000184611.11|KCNH7|pc|chr2:162501984:162502294:-	0	-
#Deleted in new
chr2	162528183	162528360	ENSG00000184611.11|KCNH7|pc|chr2:162528183:162528360:-	0	-
#Deleted in new
chr2	162538069	162538076	ENSG00000184611.11|KCNH7|pc|chr2:162538069:162538076:-	0	-
#Deleted in new
chr21	6254790	6254849	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6254790:6254849:-	0	-
#Deleted in new
chr21	6267134	6267275	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6267134:6267275:-	0	-
#Deleted in new
chr21	6267134	6267278	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6267134:6267278:-	0	-
#Deleted in new
chr21	6267134	6267280	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6267134:6267280:-	0	-
#Deleted in new
chr21	6267134	6267304	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6267134:6267304:-	0	-
#Deleted in new
chr21	6267134	6267313	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6267134:6267313:-	0	-
#Deleted in new
chr21	6267134	6267317	ENSG00000275496.4|CU633906.1|lncRNA|chr21:6267134:6267317:-	0	-
#Deleted in new
chr21	6318433	6318604	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6318433:6318604:+	0	+
#Deleted in new
chr21	6318439	6318604	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6318439:6318604:+	0	+
#Deleted in new
chr21	6318494	6318604	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6318494:6318604:+	0	+
#Deleted in new
chr21	6320871	6320974	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6320871:6320974:+	0	+
#Deleted in new
chr21	6321163	6321717	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6321163:6321717:+	0	+
#Deleted in new
chr21	6329547	6329607	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6329547:6329607:+	0	+
#Partially deleted in new
chr2	1635407	1637064	ENSG00000130508.10|PXDN|pc|chr2:1635407:1637064:-	0	-
#Deleted in new
chr2	16354255	16354300	ENSG00000224400.5|AC010880.1|lncRNA|chr2:16354255:16354300:+	0	+
#Deleted in new
chr21	6354263	6354522	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6354263:6354522:+	0	+
#Deleted in new
chr21	6354357	6354522	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6354357:6354522:+	0	+
#Deleted in new
chr2	16355184	16355267	ENSG00000224400.5|AC010880.1|lncRNA|chr2:16355184:16355267:+	0	+
#Deleted in new
chr21	6356687	6356986	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6356687:6356986:+	0	+
#Deleted in new
chr21	6358554	6358574	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6358554:6358574:+	0	+
#Deleted in new
chr21	6358554	6359184	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6358554:6359184:+	0	+
#Deleted in new
chr21	6358554	6360415	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6358554:6360415:+	0	+
#Deleted in new
chr21	6358576	6358738	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6358576:6358738:+	0	+
#Deleted in new
chr21	6358740	6359767	ENSG00000278903.3|CU633906.2|lncRNA|chr21:6358740:6359767:+	0	+
#Partially deleted in new
chr2	163749572	163749907	ENSG00000237844.1|AC016766.1|lncRNA|chr2:163749572:163749907:-	0	-
#Partially deleted in new
chr2	164250719	164250811	ENSG00000237844.1|AC016766.1|lncRNA|chr2:164250719:164250811:-	0	-
#Deleted in new
chr2	16431730	16431807	ENSG00000224400.5|AC010880.1|lncRNA|chr2:16431730:16431807:+	0	+
#Deleted in new
chr2	16432504	16432702	ENSG00000224400.5|AC010880.1|lncRNA|chr2:16432504:16432702:+	0	+
#Deleted in new
chr2	164539765	164539897	ENSG00000115290.9|GRB14|pc|chr2:164539765:164539897:-	0	-
#Deleted in new
chr21	6459455	6459638	ENSG00000274276.4|CBSL|pc|chr21:6459455:6459638:-	0	-
#Deleted in new
chr21	6459455	6460082	ENSG00000274276.4|CBSL|pc|chr21:6459455:6460082:-	0	-
#Deleted in new
chr21	6461657	6461713	ENSG00000274276.4|CBSL|pc|chr21:6461657:6461713:-	0	-
#Deleted in new
chr21	6464943	6464981	ENSG00000274276.4|CBSL|pc|chr21:6464943:6464981:-	0	-
#Deleted in new
chr21	6464943	6465019	ENSG00000274276.4|CBSL|pc|chr21:6464943:6465019:-	0	-
#Deleted in new
chr2	164653623	164653914	ENSG00000082438.15|COBLL1|pc|chr2:164653623:164653914:-	0	-
#Deleted in new
chr2	164665846	164665901	ENSG00000082438.15|COBLL1|pc|chr2:164665846:164665901:-	0	-
#Deleted in new
chr21	6467902	6468040	ENSG00000274276.4|CBSL|pc|chr21:6467902:6468040:-	0	-
#Deleted in new
chr2	164761282	164761453	ENSG00000082438.15|COBLL1|pc|chr2:164761282:164761453:-	0	-
#Deleted in new
chr2	164779654	164779785	ENSG00000082438.15|COBLL1|pc|chr2:164779654:164779785:-	0	-
#Deleted in new
chr2	164800533	164800554	ENSG00000082438.15|COBLL1|pc|chr2:164800533:164800554:-	0	-
#Deleted in new
chr2	164837427	164837498	ENSG00000082438.15|COBLL1|pc|chr2:164837427:164837498:-	0	-
#Partially deleted in new
chr21	6484629	6486230	ENSG00000275895.6|U2AF1L5|pc|chr21:6484629:6486230:-	0	-
#Deleted in new
chr2	164937524	164937697	ENSG00000169507.9|SLC38A11|pc|chr2:164937524:164937697:-	0	-
#Deleted in new
chr2	164949934	164950133	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164949934:164950133:+	0	+
#Deleted in new
chr2	164950063	164950133	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164950063:164950133:+	0	+
#Deleted in new
chr2	164956764	164956795	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164956764:164956795:+	0	+
#Deleted in new
chr2	164959054	164959082	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164959054:164959082:+	0	+
#Deleted in new
chr2	164959054	164959143	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164959054:164959143:+	0	+
#Deleted in new
chr2	164959254	164959329	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164959254:164959329:+	0	+
#Deleted in new
chr2	164959254	164959360	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164959254:164959360:+	0	+
#Deleted in new
chr2	164960898	164960967	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164960898:164960967:+	0	+
#Deleted in new
chr2	164991983	164992168	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164991983:164992168:+	0	+
#Deleted in new
chr2	164992130	164992168	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164992130:164992168:+	0	+
#Deleted in new
chr2	164992156	164992168	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164992156:164992168:+	0	+
#Deleted in new
chr2	164993460	164993569	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164993460:164993569:+	0	+
#Deleted in new
chr2	164993460	164993574	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164993460:164993574:+	0	+
#Deleted in new
chr2	164993460	164993640	ENSG00000236283.4|AC019197.1|lncRNA|chr2:164993460:164993640:+	0	+
#Deleted in new
chr2	165077619	165077781	ENSG00000236283.4|AC019197.1|lncRNA|chr2:165077619:165077781:+	0	+
#Deleted in new
chr2	165080212	165081536	ENSG00000236283.4|AC019197.1|lncRNA|chr2:165080212:165081536:+	0	+
#Deleted in new
chr21	6520343	6520670	ENSG00000279226.1|FP236240.3|lncRNA|chr21:6520343:6520670:-	0	-
#Deleted in new
chr2	165208112	165208261	ENSG00000236283.4|AC019197.1|lncRNA|chr2:165208112:165208261:+	0	+
#Deleted in new
chr2	165208112	165208265	ENSG00000136531.15|SCN2A|pc|chr2:165208112:165208265:+	0	+
#Deleted in new
chr2	165243708	165243824	ENSG00000136531.15|SCN2A|pc|chr2:165243708:165243824:+	0	+
#Deleted in new
chr2	165245329	165245448	ENSG00000136531.15|SCN2A|pc|chr2:165245329:165245448:+	0	+
#Deleted in new
chr2	16524854	16525037	ENSG00000237633.2|AC104623.1|lncRNA|chr2:16524854:16525037:+	0	+
#Deleted in new
chr2	16527664	16527809	ENSG00000237633.2|AC104623.1|lncRNA|chr2:16527664:16527809:+	0	+
#Deleted in new
chr2	165290629	165290785	ENSG00000136531.15|SCN2A|pc|chr2:165290629:165290785:+	0	+
#Partially deleted in new
chr2	1653075	1653785	ENSG00000130508.10|PXDN|pc|chr2:1653075:1653785:-	0	-
#Deleted in new
chr2	165320239	165320364	ENSG00000136531.15|SCN2A|pc|chr2:165320239:165320364:+	0	+
#Deleted in new
chr2	16541689	16543139	ENSG00000279663.2|AC104623.2|lncRNA|chr2:16541689:16543139:-	0	-
#Deleted in new
chr21	6552766	6552930	ENSG00000278927.1|FP236240.2|lncRNA|chr21:6552766:6552930:-	0	-
#Deleted in new
chr21	6553769	6553955	ENSG00000278927.1|FP236240.2|lncRNA|chr21:6553769:6553955:-	0	-
#Deleted in new
chr2	165838855	165839098	ENSG00000232411.1|AC009495.2|lncRNA|chr2:165838855:165839098:-	0	-
#Deleted in new
chr2	165933856	165934076	ENSG00000224490.5|TTC21B-AS1|lncRNA|chr2:165933856:165934076:+	0	+
#Deleted in new
chr2	165933887	165934076	ENSG00000224490.5|TTC21B-AS1|lncRNA|chr2:165933887:165934076:+	0	+
#Deleted in new
chr2	165933890	165934076	ENSG00000224490.5|TTC21B-AS1|lncRNA|chr2:165933890:165934076:+	0	+
#Deleted in new
chr2	165934733	165934789	ENSG00000224490.5|TTC21B-AS1|lncRNA|chr2:165934733:165934789:+	0	+
#Deleted in new
chr2	165947196	165947341	ENSG00000224490.5|TTC21B-AS1|lncRNA|chr2:165947196:165947341:+	0	+
#Deleted in new
chr2	165947196	165947583	ENSG00000224490.5|TTC21B-AS1|lncRNA|chr2:165947196:165947583:+	0	+
#Deleted in new
chr2	165947887	165947925	ENSG00000224490.5|TTC21B-AS1|lncRNA|chr2:165947887:165947925:+	0	+
#Deleted in new
chr2	165948034	165948153	ENSG00000224490.5|TTC21B-AS1|lncRNA|chr2:165948034:165948153:+	0	+
#Deleted in new
chr2	165957398	165957592	ENSG00000236107.7|AC010127.1|lncRNA|chr2:165957398:165957592:+	0	+
#Deleted in new
chr2	165957429	165957592	ENSG00000236107.7|AC010127.1|lncRNA|chr2:165957429:165957592:+	0	+
#Deleted in new
chr2	165957554	165957592	ENSG00000236107.7|AC010127.1|lncRNA|chr2:165957554:165957592:+	0	+
#Deleted in new
chr2	165957569	165957592	ENSG00000236107.7|AC010127.1|lncRNA|chr2:165957569:165957592:+	0	+
#Deleted in new
chr2	166060639	166060867	ENSG00000144285.18|SCN1A|pc|chr2:166060639:166060867:-	0	-
#Deleted in new
chr2	166071622	166071886	ENSG00000144285.18|SCN1A|pc|chr2:166071622:166071886:-	0	-
#Deleted in new
chr2	166075287	166075345	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166075287:166075345:+	0	+
#Deleted in new
chr2	166077087	166077152	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166077087:166077152:+	0	+
#Deleted in new
chr2	166077709	166077801	ENSG00000144285.18|SCN1A|pc|chr2:166077709:166077801:-	0	-
#Deleted in new
chr2	166077709	166077847	ENSG00000144285.18|SCN1A|pc|chr2:166077709:166077847:-	0	-
#Deleted in new
chr2	166081530	166081678	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166081530:166081678:+	0	+
#Deleted in new
chr2	166081564	166081678	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166081564:166081678:+	0	+
#Deleted in new
chr2	166092552	166092663	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166092552:166092663:+	0	+
#Deleted in new
chr2	166109490	166109602	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166109490:166109602:+	0	+
#Deleted in new
chr2	166133821	166133908	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166133821:166133908:+	0	+
#Deleted in new
chr2	166137542	166137635	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166137542:166137635:+	0	+
#Deleted in new
chr2	166171386	166171511	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166171386:166171511:+	0	+
#Deleted in new
chr2	166171386	166171516	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166171386:166171516:+	0	+
#Deleted in new
chr2	166171386	166171521	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166171386:166171521:+	0	+
#Deleted in new
chr2	166171386	166171544	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166171386:166171544:+	0	+
#Deleted in new
chr2	166171386	166171547	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166171386:166171547:+	0	+
#Deleted in new
chr2	166171386	166171558	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166171386:166171558:+	0	+
#Partially deleted in new
chr2	16622938	16623137	ENSG00000197872.11|FAM49A|pc|chr2:16622938:16623137:-	0	-
#Partially deleted in new
chr2	166300930	166301784	ENSG00000236107.7|AC010127.1|lncRNA|chr2:166300930:166301784:+	0	+
#Deleted in new
chr21	6630181	6630570	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6630181:6630570:-	0	-
#Deleted in new
chr21	6630181	6632437	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6630181:6632437:-	0	-
#Deleted in new
chr21	6631797	6632437	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6631797:6632437:-	0	-
#Deleted in new
chr21	6632152	6632437	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6632152:6632437:-	0	-
#Deleted in new
chr21	6632362	6632437	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6632362:6632437:-	0	-
#Deleted in new
chr21	6634357	6634768	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6634357:6634768:-	0	-
#Deleted in new
chr21	6634603	6634768	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6634603:6634768:-	0	-
#Deleted in new
chr21	6634603	6638337	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6634603:6638337:-	0	-
#Deleted in new
chr21	6635610	6635776	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6635610:6635776:-	0	-
#Deleted in new
chr2	166436346	166436440	ENSG00000136546.13|SCN7A|pc|chr2:166436346:166436440:-	0	-
#Partially deleted in new
chr2	166461754	166462530	ENSG00000136546.13|SCN7A|pc|chr2:166461754:166462530:-	0	-
#Deleted in new
chr21	6659518	6659578	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6659518:6659578:-	0	-
#Deleted in new
chr21	6659518	6659740	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6659518:6659740:-	0	-
#Deleted in new
chr21	6667303	6667962	ENSG00000278878.1|CU638689.1|lncRNA|chr21:6667303:6667962:-	0	-
#Deleted in new
chr21	6667303	6667962	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6667303:6667962:-	0	-
#Deleted in new
chr21	6667709	6668254	ENSG00000278878.1|CU638689.1|lncRNA|chr21:6667709:6668254:-	0	-
#Deleted in new
chr21	6668151	6668243	ENSG00000278878.1|CU638689.1|lncRNA|chr21:6668151:6668243:-	0	-
#Deleted in new
chr21	6668151	6668243	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6668151:6668243:-	0	-
#Deleted in new
chr21	6668151	6668254	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6668151:6668254:-	0	-
#Deleted in new
chr21	6670521	6670611	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6670521:6670611:-	0	-
#Deleted in new
chr21	6670521	6670642	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6670521:6670642:-	0	-
#Deleted in new
chr21	6670521	6670650	ENSG00000278878.1|CU638689.1|lncRNA|chr21:6670521:6670650:-	0	-
#Deleted in new
chr21	6670521	6670650	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6670521:6670650:-	0	-
#Deleted in new
chr21	6670521	6670667	ENSG00000278878.1|CU638689.1|lncRNA|chr21:6670521:6670667:-	0	-
#Deleted in new
chr21	6670521	6670692	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6670521:6670692:-	0	-
#Deleted in new
chr21	6670521	6670695	ENSG00000280145.3|CU638689.4|lncRNA|chr21:6670521:6670695:-	0	-
#Deleted in new
chr2	166888486	166888557	ENSG00000163092.19|XIRP2|pc|chr2:166888486:166888557:+	0	+
#Deleted in new
chr2	1669713	1669833	ENSG00000130508.10|PXDN|pc|chr2:1669713:1669833:-	0	-
#Deleted in new
chr2	167184541	167184640	ENSG00000163092.19|XIRP2|pc|chr2:167184541:167184640:+	0	+
#Deleted in new
chr21	6721811	6721991	ENSG00000280164.1|CU638689.5|lncRNA|chr21:6721811:6721991:+	0	+
#Deleted in new
chr21	6724258	6724293	ENSG00000280164.1|CU638689.5|lncRNA|chr21:6724258:6724293:+	0	+
#Deleted in new
chr21	6724392	6725209	ENSG00000280164.1|CU638689.5|lncRNA|chr21:6724392:6725209:+	0	+
#Deleted in new
chr2	16728123	16728179	ENSG00000223536.5|AC008164.1|lncRNA|chr2:16728123:16728179:+	0	+
#Deleted in new
chr2	16765011	16765125	ENSG00000223536.5|AC008164.1|lncRNA|chr2:16765011:16765125:+	0	+
#Deleted in new
chr2	16767015	16767409	ENSG00000223536.5|AC008164.1|lncRNA|chr2:16767015:16767409:+	0	+
#Deleted in new
chr2	16767015	16767555	ENSG00000223536.5|AC008164.1|lncRNA|chr2:16767015:16767555:+	0	+
#Deleted in new
chr21	6789591	6789706	ENSG00000279998.1|FP475955.3|lncRNA|chr21:6789591:6789706:+	0	+
#Deleted in new
chr2	167900731	167900782	ENSG00000235335.2|AC016723.1|lncRNA|chr2:167900731:167900782:-	0	-
#Deleted in new
chr2	167941108	167941144	ENSG00000235335.2|AC016723.1|lncRNA|chr2:167941108:167941144:-	0	-
#Deleted in new
chr21	6797729	6797785	ENSG00000279998.1|FP475955.3|lncRNA|chr21:6797729:6797785:+	0	+
#Deleted in new
chr2	168783011	168783090	ENSG00000227617.8|CERS6-AS1|lncRNA|chr2:168783011:168783090:-	0	-
#Deleted in new
chr2	168783138	168783471	ENSG00000227617.8|CERS6-AS1|lncRNA|chr2:168783138:168783471:-	0	-
#Deleted in new
chr2	168783233	168783375	ENSG00000227617.8|CERS6-AS1|lncRNA|chr2:168783233:168783375:-	0	-
#Deleted in new
chr2	168783954	168784047	ENSG00000227617.8|CERS6-AS1|lncRNA|chr2:168783954:168784047:-	0	-
#Deleted in new
chr2	168784097	168784214	ENSG00000227617.8|CERS6-AS1|lncRNA|chr2:168784097:168784214:-	0	-
#Deleted in new
chr2	168786356	168786397	ENSG00000227617.8|CERS6-AS1|lncRNA|chr2:168786356:168786397:-	0	-
#Deleted in new
chr2	168786356	168786428	ENSG00000227617.8|CERS6-AS1|lncRNA|chr2:168786356:168786428:-	0	-
#Deleted in new
chr2	168786356	168786429	ENSG00000227617.8|CERS6-AS1|lncRNA|chr2:168786356:168786429:-	0	-
#Deleted in new
chr2	168786356	168786435	ENSG00000227617.8|CERS6-AS1|lncRNA|chr2:168786356:168786435:-	0	-
#Deleted in new
chr2	168786538	168786636	ENSG00000163072.15|NOSTRIN|pc|chr2:168786538:168786636:+	0	+
#Deleted in new
chr2	168786886	168786961	ENSG00000227617.8|CERS6-AS1|lncRNA|chr2:168786886:168786961:-	0	-
#Deleted in new
chr2	168798150	168798222	ENSG00000163072.15|NOSTRIN|pc|chr2:168798150:168798222:+	0	+
#Deleted in new
chr2	168798154	168798222	ENSG00000163072.15|NOSTRIN|pc|chr2:168798154:168798222:+	0	+
#Deleted in new
chr2	168801065	168801203	ENSG00000163072.15|NOSTRIN|pc|chr2:168801065:168801203:+	0	+
#Deleted in new
chr2	168818171	168818296	ENSG00000163072.15|NOSTRIN|pc|chr2:168818171:168818296:+	0	+
#Partially deleted in new
chr2	168870893	168871555	ENSG00000152253.8|SPC25|pc|chr2:168870893:168871555:-	0	-
#Deleted in new
chr2	168884847	168884907	ENSG00000152253.8|SPC25|pc|chr2:168884847:168884907:-	0	-
#Deleted in new
chr2	168913195	168913371	ENSG00000152253.8|SPC25|pc|chr2:168913195:168913371:-	0	-
#Deleted in new
chr2	168913199	168913277	ENSG00000152253.8|SPC25|pc|chr2:168913199:168913277:-	0	-
#Partially deleted in new
chr21	6896994	6897263	ENSG00000278955.3|FP475955.1|lncRNA|chr21:6896994:6897263:+	0	+
#Deleted in new
chr21	6904883	6905165	ENSG00000279751.1|FP475955.2|lncRNA|chr21:6904883:6905165:+	0	+
#Deleted in new
chr2	169064788	169065099	ENSG00000073737.16|DHRS9|pc|chr2:169064788:169065099:+	0	+
#Deleted in new
chr21	6906516	6906692	ENSG00000279751.1|FP475955.2|lncRNA|chr21:6906516:6906692:+	0	+
#Deleted in new
chr2	169101065	169101210	ENSG00000235321.1|AC007556.1|lncRNA|chr2:169101065:169101210:+	0	+
#Deleted in new
chr2	1692528	1692570	ENSG00000130508.10|PXDN|pc|chr2:1692528:1692570:-	0	-
#Partially deleted in new
chr2	169482250	169482710	ENSG00000163093.11|BBS5|pc|chr2:169482250:169482710:+	0	+
#Split in new
chr2	169504480	169506490	ENSG00000163093.11|BBS5|pc|chr2:169504480:169506490:+	0	+
#Split in new
chr2	169504480	169506655	ENSG00000163093.11|BBS5|pc|chr2:169504480:169506655:+	0	+
#Deleted in new
chr2	169571003	169571239	ENSG00000138399.17|FASTKD1|pc|chr2:169571003:169571239:-	0	-
#Deleted in new
chr2	169572995	169573875	ENSG00000138399.17|FASTKD1|pc|chr2:169572995:169573875:-	0	-
#Deleted in new
chr2	169573668	169573812	ENSG00000138399.17|FASTKD1|pc|chr2:169573668:169573812:-	0	-
#Deleted in new
chr2	169573668	169573832	ENSG00000138399.17|FASTKD1|pc|chr2:169573668:169573832:-	0	-
#Deleted in new
chr2	169573668	169573873	ENSG00000138399.17|FASTKD1|pc|chr2:169573668:169573873:-	0	-
#Deleted in new
chr2	16970033	16970077	ENSG00000237670.1|LINC01866|lncRNA|chr2:16970033:16970077:+	0	+
#Deleted in new
chr2	16971429	16971532	ENSG00000237670.1|LINC01866|lncRNA|chr2:16971429:16971532:+	0	+
#Deleted in new
chr2	16974443	16974497	ENSG00000237670.1|LINC01866|lncRNA|chr2:16974443:16974497:+	0	+
#Deleted in new
chr2	169773319	169773385	ENSG00000213160.9|KLHL23|pc|chr2:169773319:169773385:+	0	+
#Deleted in new
chr2	169791932	169793832	ENSG00000138385.15|SSB|pc|chr2:169791932:169793832:+	0	+
#Partially deleted in new
chr2	169805997	169806113	ENSG00000138385.15|SSB|pc|chr2:169805997:169806113:+	0	+
#Deleted in new
chr21	6986449	6986648	ENSG00000280018.3|CU634019.6|lncRNA|chr21:6986449:6986648:-	0	-
#Deleted in new
chr21	6994373	6995032	ENSG00000279313.1|CU634019.4|lncRNA|chr21:6994373:6995032:-	0	-
#Deleted in new
chr21	6994373	6995032	ENSG00000280018.3|CU634019.6|lncRNA|chr21:6994373:6995032:-	0	-
#Deleted in new
chr21	6995221	6995313	ENSG00000279313.1|CU634019.4|lncRNA|chr21:6995221:6995313:-	0	-
#Deleted in new
chr21	6995221	6995313	ENSG00000280018.3|CU634019.6|lncRNA|chr21:6995221:6995313:-	0	-
#Deleted in new
chr21	6995221	6995324	ENSG00000280018.3|CU634019.6|lncRNA|chr21:6995221:6995324:-	0	-
#Deleted in new
chr2	169964392	169964538	ENSG00000144357.16|UBR3|pc|chr2:169964392:169964538:+	0	+
#Deleted in new
chr21	6997591	6997699	ENSG00000280018.3|CU634019.6|lncRNA|chr21:6997591:6997699:-	0	-
#Deleted in new
chr21	6997591	6997737	ENSG00000279313.1|CU634019.4|lncRNA|chr21:6997591:6997737:-	0	-
#Deleted in new
chr21	6997591	6997740	ENSG00000280018.3|CU634019.6|lncRNA|chr21:6997591:6997740:-	0	-
#Deleted in new
chr21	6997591	6997765	ENSG00000280018.3|CU634019.6|lncRNA|chr21:6997591:6997765:-	0	-
#Deleted in new
chr2	170016832	170016919	ENSG00000144357.16|UBR3|pc|chr2:170016832:170016919:+	0	+
#Deleted in new
chr2	170332084	170332277	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170332084:170332277:-	0	-
#Deleted in new
chr2	170333920	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333920:170334131:-	0	-
#Deleted in new
chr2	170333923	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333923:170334131:-	0	-
#Deleted in new
chr2	170333924	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333924:170334131:-	0	-
#Deleted in new
chr2	170333926	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333926:170334131:-	0	-
#Deleted in new
chr2	170333927	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333927:170334131:-	0	-
#Deleted in new
chr2	170333930	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333930:170334131:-	0	-
#Deleted in new
chr2	170333932	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333932:170334131:-	0	-
#Deleted in new
chr2	170333936	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333936:170334131:-	0	-
#Deleted in new
chr2	170333954	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333954:170334131:-	0	-
#Deleted in new
chr2	170333958	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333958:170334131:-	0	-
#Deleted in new
chr2	170333981	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333981:170334131:-	0	-
#Deleted in new
chr2	170333998	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170333998:170334131:-	0	-
#Deleted in new
chr2	170334012	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170334012:170334131:-	0	-
#Deleted in new
chr2	170334042	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170334042:170334131:-	0	-
#Deleted in new
chr2	170334048	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170334048:170334131:-	0	-
#Deleted in new
chr2	170334073	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170334073:170334131:-	0	-
#Deleted in new
chr2	170334082	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170334082:170334131:-	0	-
#Deleted in new
chr2	170334098	170334131	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170334098:170334131:-	0	-
#Deleted in new
chr2	170337848	170337913	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170337848:170337913:-	0	-
#Deleted in new
chr2	170337848	170337948	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170337848:170337948:-	0	-
#Deleted in new
chr2	170337848	170338176	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170337848:170338176:-	0	-
#Deleted in new
chr2	170342103	170342343	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170342103:170342343:-	0	-
#Deleted in new
chr2	170343458	170343555	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343458:170343555:-	0	-
#Deleted in new
chr2	170343458	170343558	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343458:170343558:-	0	-
#Deleted in new
chr2	170343458	170343600	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343458:170343600:-	0	-
#Deleted in new
chr2	170343458	170343637	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343458:170343637:-	0	-
#Deleted in new
chr2	170343458	170343656	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343458:170343656:-	0	-
#Deleted in new
chr2	170343494	170343656	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343494:170343656:-	0	-
#Deleted in new
chr2	170343586	170343637	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343586:170343637:-	0	-
#Deleted in new
chr2	170343586	170343656	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343586:170343656:-	0	-
#Deleted in new
chr2	170343587	170343656	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343587:170343656:-	0	-
#Deleted in new
chr2	170343590	170343656	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343590:170343656:-	0	-
#Deleted in new
chr2	170343593	170343656	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343593:170343656:-	0	-
#Deleted in new
chr2	170343605	170343656	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343605:170343656:-	0	-
#Deleted in new
chr2	170343816	170343840	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170343816:170343840:-	0	-
#Deleted in new
chr2	170344171	170344298	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170344171:170344298:-	0	-
#Deleted in new
chr2	170344171	170344301	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170344171:170344301:-	0	-
#Deleted in new
chr2	170344340	170344352	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170344340:170344352:-	0	-
#Deleted in new
chr2	170344340	170344381	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170344340:170344381:-	0	-
#Deleted in new
chr2	170344340	170344438	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170344340:170344438:-	0	-
#Partially deleted in new
chr2	170344340	170344574	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170344340:170344574:-	0	-
#Deleted in new
chr2	170346177	170346242	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170346177:170346242:-	0	-
#Deleted in new
chr2	170346177	170346276	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170346177:170346276:-	0	-
#Deleted in new
chr2	170346177	170346405	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170346177:170346405:-	0	-
#Deleted in new
chr2	170346299	170346405	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170346299:170346405:-	0	-
#Deleted in new
chr2	170346308	170346421	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170346308:170346421:-	0	-
#Deleted in new
chr2	170347951	170347997	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170347951:170347997:-	0	-
#Deleted in new
chr2	170347951	170348099	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170347951:170348099:-	0	-
#Deleted in new
chr2	170347951	170348125	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170347951:170348125:-	0	-
#Deleted in new
chr2	170347951	170348654	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170347951:170348654:-	0	-
#Deleted in new
chr2	170349511	170349634	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170349511:170349634:-	0	-
#Deleted in new
chr2	170349837	170349851	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170349837:170349851:-	0	-
#Deleted in new
chr2	170350317	170350343	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350317:170350343:-	0	-
#Deleted in new
chr2	170350317	170350373	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350317:170350373:-	0	-
#Deleted in new
chr2	170350317	170350644	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350317:170350644:-	0	-
#Deleted in new
chr2	170350461	170350571	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350461:170350571:-	0	-
#Deleted in new
chr2	170350461	170350581	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350461:170350581:-	0	-
#Deleted in new
chr2	170350461	170350627	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350461:170350627:-	0	-
#Deleted in new
chr2	170350461	170350641	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350461:170350641:-	0	-
#Deleted in new
chr2	170350461	170350644	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350461:170350644:-	0	-
#Deleted in new
chr2	170350735	170350763	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170350763:-	0	-
#Deleted in new
chr2	170350735	170350792	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170350792:-	0	-
#Deleted in new
chr2	170350735	170350848	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170350848:-	0	-
#Deleted in new
chr2	170350735	170350870	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170350870:-	0	-
#Deleted in new
chr2	170350735	170350892	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170350892:-	0	-
#Deleted in new
chr2	170350735	170350916	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170350916:-	0	-
#Deleted in new
chr2	170350735	170350942	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170350942:-	0	-
#Deleted in new
chr2	170350735	170350973	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170350973:-	0	-
#Deleted in new
chr2	170350735	170350978	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170350978:-	0	-
#Deleted in new
chr2	170350735	170350988	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170350988:-	0	-
#Deleted in new
chr2	170350735	170351012	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170351012:-	0	-
#Deleted in new
chr2	170350735	170351055	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170351055:-	0	-
#Deleted in new
chr2	170350735	170351071	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170351071:-	0	-
#Deleted in new
chr2	170350735	170351102	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170351102:-	0	-
#Deleted in new
chr2	170350735	170351103	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170351103:-	0	-
#Deleted in new
chr2	170350735	170351106	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170351106:-	0	-
#Deleted in new
chr2	170350735	170351111	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170351111:-	0	-
#Deleted in new
chr2	170350735	170351118	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350735:170351118:-	0	-
#Deleted in new
chr2	170350768	170351030	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350768:170351030:-	0	-
#Deleted in new
chr2	170350878	170350943	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350878:170350943:-	0	-
#Deleted in new
chr2	170350878	170351099	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350878:170351099:-	0	-
#Deleted in new
chr2	170350878	170351108	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350878:170351108:-	0	-
#Deleted in new
chr2	170350878	170351117	ENSG00000231898.8|AC012594.1|lncRNA|chr2:170350878:170351117:-	0	-
#Deleted in new
chr21	7048890	7049060	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7048890:7049060:+	0	+
#Deleted in new
chr21	7048916	7049060	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7048916:7049060:+	0	+
#Deleted in new
chr21	7048919	7049060	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7048919:7049060:+	0	+
#Deleted in new
chr21	7048938	7049060	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7048938:7049060:+	0	+
#Deleted in new
chr21	7048981	7049060	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7048981:7049060:+	0	+
#Deleted in new
chr2	170514920	170515022	ENSG00000071909.18|MYO3B|pc|chr2:170514920:170515022:+	0	+
#Deleted in new
chr2	170524504	170524626	ENSG00000071909.18|MYO3B|pc|chr2:170524504:170524626:+	0	+
#Deleted in new
chr21	7061346	7061405	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7061346:7061405:+	0	+
#Partially deleted in new
chr2	170640373	170641166	ENSG00000213981.8|AC007277.1|lncRNA|chr2:170640373:170641166:-	0	-
#Deleted in new
chr2	170641429	170641463	ENSG00000213981.8|AC007277.1|lncRNA|chr2:170641429:170641463:-	0	-
#Deleted in new
chr2	170644485	170644643	ENSG00000213981.8|AC007277.1|lncRNA|chr2:170644485:170644643:-	0	-
#Deleted in new
chr2	170646908	170646939	ENSG00000071909.18|MYO3B|pc|chr2:170646908:170646939:+	0	+
#Deleted in new
chr2	170649921	170649975	ENSG00000213981.8|AC007277.1|lncRNA|chr2:170649921:170649975:-	0	-
#Deleted in new
chr2	170668324	170668488	ENSG00000213981.8|AC007277.1|lncRNA|chr2:170668324:170668488:-	0	-
#Deleted in new
chr2	170682394	170682490	ENSG00000213981.8|AC007277.1|lncRNA|chr2:170682394:170682490:-	0	-
#Deleted in new
chr2	170682895	170683059	ENSG00000213981.8|AC007277.1|lncRNA|chr2:170682895:170683059:-	0	-
#Deleted in new
chr2	170727658	170727788	ENSG00000234350.4|AC007405.1|lncRNA|chr2:170727658:170727788:-	0	-
#Deleted in new
chr2	170727658	170727855	ENSG00000234350.4|AC007405.1|lncRNA|chr2:170727658:170727855:-	0	-
#Deleted in new
chr2	170727718	170727788	ENSG00000234350.4|AC007405.1|lncRNA|chr2:170727718:170727788:-	0	-
#Deleted in new
chr2	170728578	170729440	ENSG00000234350.4|AC007405.1|lncRNA|chr2:170728578:170729440:-	0	-
#Deleted in new
chr2	170730367	170730997	ENSG00000234350.4|AC007405.1|lncRNA|chr2:170730367:170730997:-	0	-
#Deleted in new
chr2	170730932	170730997	ENSG00000234350.4|AC007405.1|lncRNA|chr2:170730932:170730997:-	0	-
#Deleted in new
chr2	170730951	170730997	ENSG00000234350.4|AC007405.1|lncRNA|chr2:170730951:170730997:-	0	-
#Deleted in new
chr2	170733878	170733994	ENSG00000234350.4|AC007405.1|lncRNA|chr2:170733878:170733994:-	0	-
#Deleted in new
chr2	170740631	170741287	ENSG00000234350.4|AC007405.1|lncRNA|chr2:170740631:170741287:-	0	-
#Deleted in new
chr2	170743891	170743956	ENSG00000234350.4|AC007405.1|lncRNA|chr2:170743891:170743956:-	0	-
#Deleted in new
chr2	170775652	170775719	ENSG00000239467.5|AC007405.3|lncRNA|chr2:170775652:170775719:+	0	+
#Deleted in new
chr2	170777146	170777177	ENSG00000239467.5|AC007405.3|lncRNA|chr2:170777146:170777177:+	0	+
#Deleted in new
chr21	7080035	7080207	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7080035:7080207:+	0	+
#Deleted in new
chr21	7080035	7080289	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7080035:7080289:+	0	+
#Deleted in new
chr21	7081003	7081213	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7081003:7081213:+	0	+
#Deleted in new
chr21	7081048	7081213	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7081048:7081213:+	0	+
#Deleted in new
chr21	7083362	7083598	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7083362:7083598:+	0	+
#Deleted in new
chr21	7083362	7083742	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7083362:7083742:+	0	+
#Deleted in new
chr21	7085244	7085500	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7085244:7085500:+	0	+
#Deleted in new
chr21	7085244	7085797	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7085244:7085797:+	0	+
#Deleted in new
chr21	7085244	7087097	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7085244:7087097:+	0	+
#Deleted in new
chr21	7085244	7087229	ENSG00000277067.4|CU634019.1|lncRNA|chr21:7085244:7087229:+	0	+
#Partially deleted in new
chr2	171059923	171059986	ENSG00000198586.13|TLK1|pc|chr2:171059923:171059986:-	0	-
#Partially deleted in new
chr2	171091613	171091810	ENSG00000198586.13|TLK1|pc|chr2:171091613:171091810:-	0	-
#Deleted in new
chr2	171231144	171231314	ENSG00000198586.13|TLK1|pc|chr2:171231144:171231314:-	0	-
#Partially deleted in new
chr21	7135333	7137789	ENSG00000279303.1|CU634019.3|lncRNA|chr21:7135333:7137789:-	0	-
#Deleted in new
chr2	171414602	171414726	ENSG00000123600.19|METTL8|pc|chr2:171414602:171414726:-	0	-
#Deleted in new
chr2	171433025	171433116	ENSG00000123600.19|METTL8|pc|chr2:171433025:171433116:-	0	-
#Deleted in new
chr2	171433025	171433219	ENSG00000123600.19|METTL8|pc|chr2:171433025:171433219:-	0	-
#Deleted in new
chr2	171447385	171447503	ENSG00000115827.13|DCAF17|pc|chr2:171447385:171447503:+	0	+
#Deleted in new
chr2	171472869	171472955	ENSG00000115827.13|DCAF17|pc|chr2:171472869:171472955:+	0	+
#Deleted in new
chr2	171539823	171539871	ENSG00000071967.11|CYBRD1|pc|chr2:171539823:171539871:+	0	+
#Deleted in new
chr2	171540807	171541128	ENSG00000071967.11|CYBRD1|pc|chr2:171540807:171541128:+	0	+
#Deleted in new
chr2	171550977	171551140	ENSG00000071967.11|CYBRD1|pc|chr2:171550977:171551140:+	0	+
#Partially deleted in new
chr2	171922606	171924927	ENSG00000128708.12|HAT1|pc|chr2:171922606:171924927:+	0	+
#Partially deleted in new
chr2	171979246	171979995	ENSG00000128708.12|HAT1|pc|chr2:171979246:171979995:+	0	+
#Partially deleted in new
chr2	171979246	171980855	ENSG00000128708.12|HAT1|pc|chr2:171979246:171980855:+	0	+
#Deleted in new
chr2	171991346	171991442	ENSG00000115840.13|SLC25A12|pc|chr2:171991346:171991442:-	0	-
#Deleted in new
chr2	172108901	172108982	ENSG00000236651.1|DLX2-AS1|lncRNA|chr2:172108901:172108982:+	0	+
#Deleted in new
chr2	172109789	172109982	ENSG00000236651.1|DLX2-AS1|lncRNA|chr2:172109789:172109982:+	0	+
#Deleted in new
chr2	172315286	172315408	ENSG00000232555.1|AC104088.1|lncRNA|chr2:172315286:172315408:+	0	+
#Partially deleted in new
chr2	172480839	172481021	ENSG00000225205.5|AC078883.1|lncRNA|chr2:172480839:172481021:-	0	-
#Deleted in new
chr2	172495374	172495516	ENSG00000225205.5|AC078883.1|lncRNA|chr2:172495374:172495516:-	0	-
#Deleted in new
chr2	172509028	172509294	ENSG00000225205.5|AC078883.1|lncRNA|chr2:172509028:172509294:-	0	-
#Deleted in new
chr2	172509602	172509813	ENSG00000225205.5|AC078883.1|lncRNA|chr2:172509602:172509813:-	0	-
#Deleted in new
chr2	172512333	172512510	ENSG00000225205.5|AC078883.1|lncRNA|chr2:172512333:172512510:-	0	-
#Deleted in new
chr2	172512333	172512518	ENSG00000225205.5|AC078883.1|lncRNA|chr2:172512333:172512518:-	0	-
#Deleted in new
chr2	172552614	172552708	ENSG00000225205.5|AC078883.1|lncRNA|chr2:172552614:172552708:-	0	-
#Deleted in new
chr2	172677140	172677582	ENSG00000228016.1|RAPGEF4-AS1|lncRNA|chr2:172677140:172677582:-	0	-
#Deleted in new
chr2	172677147	172677582	ENSG00000228016.1|RAPGEF4-AS1|lncRNA|chr2:172677147:172677582:-	0	-
#Partially deleted in new
chr2	172736125	172736206	ENSG00000228016.1|RAPGEF4-AS1|lncRNA|chr2:172736125:172736206:-	0	-
#Deleted in new
chr2	173166445	173166838	ENSG00000238133.6|MAP3K20-AS1|lncRNA|chr2:173166445:173166838:-	0	-
#Deleted in new
chr2	173166729	173166838	ENSG00000238133.6|MAP3K20-AS1|lncRNA|chr2:173166729:173166838:-	0	-
#Deleted in new
chr2	173212668	173212791	ENSG00000238133.6|MAP3K20-AS1|lncRNA|chr2:173212668:173212791:-	0	-
#Deleted in new
chr2	173271510	173271618	ENSG00000238133.6|MAP3K20-AS1|lncRNA|chr2:173271510:173271618:-	0	-
#Deleted in new
chr2	173271510	173271620	ENSG00000238133.6|MAP3K20-AS1|lncRNA|chr2:173271510:173271620:-	0	-
#Deleted in new
chr2	173281681	173282036	ENSG00000238133.6|MAP3K20-AS1|lncRNA|chr2:173281681:173282036:-	0	-
#Deleted in new
chr2	173811075	173811392	ENSG00000270460.1|AC106900.2|lncRNA|chr2:173811075:173811392:+	0	+
#Partially deleted in new
chr2	173880864	173881061	ENSG00000224638.1|AC106900.1|lncRNA|chr2:173880864:173881061:-	0	-
#Deleted in new
chr2	173897974	173898029	ENSG00000224638.1|AC106900.1|lncRNA|chr2:173897974:173898029:-	0	-
#Deleted in new
chr2	173899390	173899428	ENSG00000224638.1|AC106900.1|lncRNA|chr2:173899390:173899428:-	0	-
#Deleted in new
chr2	173968350	173969418	ENSG00000271151.1|AC016737.1|lncRNA|chr2:173968350:173969418:+	0	+
#Deleted in new
chr2	174217871	174217946	ENSG00000138430.15|OLA1|pc|chr2:174217871:174217946:-	0	-
#Deleted in new
chr21	7430658	7430838	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7430658:7430838:+	0	+
#Deleted in new
chr21	7430668	7430838	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7430668:7430838:+	0	+
#Deleted in new
chr21	7430694	7430838	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7430694:7430838:+	0	+
#Deleted in new
chr21	7430716	7430838	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7430716:7430838:+	0	+
#Deleted in new
chr21	7430729	7430838	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7430729:7430838:+	0	+
#Deleted in new
chr21	7430759	7430838	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7430759:7430838:+	0	+
#Partially deleted in new
chr2	174358172	174358536	ENSG00000138433.15|CIR1|pc|chr2:174358172:174358536:-	0	-
#Deleted in new
chr2	174410036	174410225	ENSG00000144306.14|SCRN3|pc|chr2:174410036:174410225:+	0	+
#Deleted in new
chr2	174410081	174410503	ENSG00000144306.14|SCRN3|pc|chr2:174410081:174410503:+	0	+
#Deleted in new
chr2	174410343	174410503	ENSG00000144306.14|SCRN3|pc|chr2:174410343:174410503:+	0	+
#Deleted in new
chr21	7443124	7443183	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7443124:7443183:+	0	+
#Deleted in new
chr2	174488034	174488156	ENSG00000226853.2|AC010894.2|lncRNA|chr2:174488034:174488156:+	0	+
#Deleted in new
chr2	174488034	174488300	ENSG00000226853.2|AC010894.2|lncRNA|chr2:174488034:174488300:+	0	+
#Deleted in new
chr2	174488034	174488386	ENSG00000226853.2|AC010894.2|lncRNA|chr2:174488034:174488386:+	0	+
#Deleted in new
chr2	174547140	174547248	ENSG00000236449.1|AC010894.3|lncRNA|chr2:174547140:174547248:+	0	+
#Deleted in new
chr2	174547368	174547477	ENSG00000236449.1|AC010894.3|lncRNA|chr2:174547368:174547477:+	0	+
#Deleted in new
chr2	174547373	174547477	ENSG00000236449.1|AC010894.3|lncRNA|chr2:174547373:174547477:+	0	+
#Deleted in new
chr2	174568606	174568823	ENSG00000115935.17|WIPF1|pc|chr2:174568606:174568823:-	0	-
#Deleted in new
chr2	174570438	174570646	ENSG00000115935.17|WIPF1|pc|chr2:174570438:174570646:-	0	-
#Deleted in new
chr2	174587472	174587726	ENSG00000237798.1|AC010894.4|lncRNA|chr2:174587472:174587726:+	0	+
#Deleted in new
chr21	7461813	7461985	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7461813:7461985:+	0	+
#Deleted in new
chr21	7461813	7462067	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7461813:7462067:+	0	+
#Partially deleted in new
chr2	174625623	174625960	ENSG00000115935.17|WIPF1|pc|chr2:174625623:174625960:-	0	-
#Deleted in new
chr2	174625709	174625960	ENSG00000115935.17|WIPF1|pc|chr2:174625709:174625960:-	0	-
#Deleted in new
chr2	174625820	174625960	ENSG00000115935.17|WIPF1|pc|chr2:174625820:174625960:-	0	-
#Deleted in new
chr2	174625856	174625960	ENSG00000115935.17|WIPF1|pc|chr2:174625856:174625960:-	0	-
#Deleted in new
chr21	7462781	7462991	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7462781:7462991:+	0	+
#Deleted in new
chr21	7462826	7462991	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7462826:7462991:+	0	+
#Deleted in new
chr2	174630381	174630429	ENSG00000115935.17|WIPF1|pc|chr2:174630381:174630429:-	0	-
#Deleted in new
chr2	174630381	174630560	ENSG00000115935.17|WIPF1|pc|chr2:174630381:174630560:-	0	-
#Deleted in new
chr2	174630381	174630625	ENSG00000115935.17|WIPF1|pc|chr2:174630381:174630625:-	0	-
#Deleted in new
chr2	174630381	174630696	ENSG00000115935.17|WIPF1|pc|chr2:174630381:174630696:-	0	-
#Deleted in new
chr21	7463448	7463503	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7463448:7463503:+	0	+
#Deleted in new
chr21	7465140	7465376	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7465140:7465376:+	0	+
#Deleted in new
chr21	7465140	7465784	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7465140:7465784:+	0	+
#Deleted in new
chr21	7467022	7467182	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7467022:7467182:+	0	+
#Deleted in new
chr21	7467022	7467278	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7467022:7467278:+	0	+
#Deleted in new
chr21	7467022	7467742	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7467022:7467742:+	0	+
#Deleted in new
chr21	7467022	7468875	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7467022:7468875:+	0	+
#Deleted in new
chr21	7467022	7469007	ENSG00000276077.4|CU633904.1|lncRNA|chr21:7467022:7469007:+	0	+
#Deleted in new
chr2	174676336	174676666	ENSG00000115935.17|WIPF1|pc|chr2:174676336:174676666:-	0	-
#Deleted in new
chr2	174677044	174677124	ENSG00000115935.17|WIPF1|pc|chr2:174677044:174677124:-	0	-
#Deleted in new
chr2	174757945	174758020	ENSG00000138435.15|CHRNA1|pc|chr2:174757945:174758020:-	0	-
#Deleted in new
chr2	174776104	174776266	ENSG00000138435.15|CHRNA1|pc|chr2:174776104:174776266:-	0	-
#Deleted in new
chr2	174821728	174821779	ENSG00000128656.13|CHN1|pc|chr2:174821728:174821779:-	0	-
#Deleted in new
chr2	174945169	174945261	ENSG00000128656.13|CHN1|pc|chr2:174945169:174945261:-	0	-
#Deleted in new
chr2	175126992	175127058	ENSG00000115966.16|ATF2|pc|chr2:175126992:175127058:-	0	-
#Deleted in new
chr2	175127155	175127231	ENSG00000115966.16|ATF2|pc|chr2:175127155:175127231:-	0	-
#Deleted in new
chr2	175147945	175147980	ENSG00000115966.16|ATF2|pc|chr2:175147945:175147980:-	0	-
#Split in new
chr2	175176257	175178402	ENSG00000154518.9|ATP5G3|pc|chr2:175176257:175178402:-	0	-
#Split in new
chr2	175181655	175184607	ENSG00000154518.9|ATP5G3|pc|chr2:175181655:175184607:-	0	-
#Deleted in new
chr2	175257249	175257588	ENSG00000229066.1|AC093459.1|lncRNA|chr2:175257249:175257588:+	0	+
#Deleted in new
chr2	175257341	175257588	ENSG00000229066.1|AC093459.1|lncRNA|chr2:175257341:175257588:+	0	+
#Deleted in new
chr2	17567379	17567707	ENSG00000163032.11|VSNL1|pc|chr2:17567379:17567707:+	0	+
#Deleted in new
chr2	175897335	175897486	ENSG00000235047.1|AC016751.2|lncRNA|chr2:175897335:175897486:+	0	+
#Deleted in new
chr2	175940987	175941080	ENSG00000144320.13|LNPK|pc|chr2:175940987:175941080:-	0	-
#Deleted in new
chr2	176270215	176270419	ENSG00000128654.13|MTX2|pc|chr2:176270215:176270419:+	0	+
#Deleted in new
chr2	176506244	176506536	ENSG00000229434.1|AC017048.1|lncRNA|chr2:176506244:176506536:-	0	-
#Partially deleted in new
chr2	176630164	176630432	ENSG00000163364.9|LINC01116|lncRNA|chr2:176630164:176630432:-	0	-
#Partially deleted in new
chr2	176633364	176633740	ENSG00000163364.9|LINC01116|lncRNA|chr2:176633364:176633740:-	0	-
#Deleted in new
chr21	7669396	7673264	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7669396:7673264:-	0	-
#Deleted in new
chr21	7669529	7669659	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7669529:7669659:-	0	-
#Deleted in new
chr21	7670166	7671382	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7670166:7671382:-	0	-
#Deleted in new
chr21	7671126	7671382	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7671126:7671382:-	0	-
#Deleted in new
chr21	7671872	7672054	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7671872:7672054:-	0	-
#Deleted in new
chr2	176724267	176724455	ENSG00000230552.5|AC092162.2|lncRNA|chr2:176724267:176724455:-	0	-
#Deleted in new
chr21	7672754	7673264	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7672754:7673264:-	0	-
#Deleted in new
chr21	7673073	7673264	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7673073:7673264:-	0	-
#Deleted in new
chr21	7673216	7673264	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7673216:7673264:-	0	-
#Partially deleted in new
chr2	176753399	176753582	ENSG00000230552.5|AC092162.2|lncRNA|chr2:176753399:176753582:-	0	-
#Deleted in new
chr21	7675413	7675578	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7675413:7675578:-	0	-
#Deleted in new
chr21	7675413	7675666	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7675413:7675666:-	0	-
#Deleted in new
chr21	7675413	7679177	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7675413:7679177:-	0	-
#Deleted in new
chr2	176757319	176757379	ENSG00000230552.5|AC092162.2|lncRNA|chr2:176757319:176757379:-	0	-
#Deleted in new
chr21	7676143	7677935	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7676143:7677935:-	0	-
#Deleted in new
chr21	7676337	7676444	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7676337:7676444:-	0	-
#Deleted in new
chr21	7676337	7676592	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7676337:7676592:-	0	-
#Deleted in new
chr21	7676419	7676592	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7676419:7676592:-	0	-
#Deleted in new
chr21	7676425	7676591	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7676425:7676591:-	0	-
#Deleted in new
chr21	7676425	7676627	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7676425:7676627:-	0	-
#Deleted in new
chr2	176782815	176782919	ENSG00000230552.5|AC092162.2|lncRNA|chr2:176782815:176782919:-	0	-
#Partially deleted in new
chr2	17678858	17682016	ENSG00000163029.15|SMC6|pc|chr2:17678858:17682016:-	0	-
#Deleted in new
chr21	7681596	7681742	ENSG00000277991.4|FP236241.1|lncRNA|chr21:7681596:7681742:-	0	-
#Deleted in new
chr2	176992825	176992966	ENSG00000236501.5|AC074286.1|lncRNA|chr2:176992825:176992966:-	0	-
#Deleted in new
chr2	177097022	177097169	ENSG00000236501.5|AC074286.1|lncRNA|chr2:177097022:177097169:-	0	-
#Deleted in new
chr2	177155621	177155673	ENSG00000229337.1|AC079305.3|lncRNA|chr2:177155621:177155673:-	0	-
#Deleted in new
chr2	177227594	177227953	ENSG00000116044.15|NFE2L2|pc|chr2:177227594:177227953:-	0	-
#Partially deleted in new
chr2	177265379	177265515	ENSG00000222043.2|AC079305.1|lncRNA|chr2:177265379:177265515:+	0	+
#Deleted in new
chr2	177300599	177300816	ENSG00000271825.1|AC019080.3|lncRNA|chr2:177300599:177300816:+	0	+
#Deleted in new
chr2	177310363	177310572	ENSG00000271996.1|AC019080.4|lncRNA|chr2:177310363:177310572:+	0	+
#Partially deleted in new
chr2	177310726	177311035	ENSG00000213963.6|AC019080.1|lncRNA|chr2:177310726:177311035:-	0	-
#Deleted in new
chr2	177310963	177311035	ENSG00000116044.15|NFE2L2|pc|chr2:177310963:177311035:-	0	-
#Deleted in new
chr2	177310963	177311035	ENSG00000213963.6|AC019080.1|lncRNA|chr2:177310963:177311035:-	0	-
#Deleted in new
chr2	177311232	177311328	ENSG00000116044.15|NFE2L2|pc|chr2:177311232:177311328:-	0	-
#Deleted in new
chr2	177311232	177311328	ENSG00000213963.6|AC019080.1|lncRNA|chr2:177311232:177311328:-	0	-
#Deleted in new
chr2	177338387	177338699	ENSG00000213963.6|AC019080.1|lncRNA|chr2:177338387:177338699:-	0	-
#Deleted in new
chr2	177338597	177338699	ENSG00000116044.15|NFE2L2|pc|chr2:177338597:177338699:-	0	-
#Deleted in new
chr2	177338597	177338699	ENSG00000213963.6|AC019080.1|lncRNA|chr2:177338597:177338699:-	0	-
#Deleted in new
chr2	177342009	177342367	ENSG00000213963.6|AC019080.1|lncRNA|chr2:177342009:177342367:-	0	-
#Deleted in new
chr2	177348321	177348475	ENSG00000213963.6|AC019080.1|lncRNA|chr2:177348321:177348475:-	0	-
#Deleted in new
chr2	17740744	17740822	ENSG00000163029.15|SMC6|pc|chr2:17740744:17740822:-	0	-
#Partially deleted in new
chr21	7745074	7745367	ENSG00000273590.4|SMIM11B|pc|chr21:7745074:7745367:+	0	+
#Partially deleted in new
chr21	7748898	7749394	ENSG00000273590.4|SMIM11B|pc|chr21:7748898:7749394:+	0	+
#Deleted in new
chr2	177558751	177559299	ENSG00000018510.13|AGPS|pc|chr2:177558751:177559299:+	0	+
#Partially deleted in new
chr21	7758104	7758627	ENSG00000273590.4|SMIM11B|pc|chr21:7758104:7758627:+	0	+
#Partially deleted in new
chr21	7758104	7758629	ENSG00000273590.4|SMIM11B|pc|chr21:7758104:7758629:+	0	+
#Deleted in new
chr2	177677880	177677947	ENSG00000128655.17|PDE11A|pc|chr2:177677880:177677947:-	0	-
#Deleted in new
chr21	7774198	7774588	ENSG00000273590.4|SMIM11B|pc|chr21:7774198:7774588:+	0	+
#Deleted in new
chr21	7777667	7777853	ENSG00000273590.4|SMIM11B|pc|chr21:7777667:7777853:+	0	+
#Deleted in new
chr2	17787814	17787921	ENSG00000163029.15|SMC6|pc|chr2:17787814:17787921:-	0	-
#Deleted in new
chr2	177888618	177888738	ENSG00000128655.17|PDE11A|pc|chr2:177888618:177888738:-	0	-
#Deleted in new
chr2	177888618	177888776	ENSG00000128655.17|PDE11A|pc|chr2:177888618:177888776:-	0	-
#Deleted in new
chr2	177921730	177921958	ENSG00000128655.17|PDE11A|pc|chr2:177921730:177921958:-	0	-
#Deleted in new
chr2	177922707	177922795	ENSG00000128655.17|PDE11A|pc|chr2:177922707:177922795:-	0	-
#Deleted in new
chr2	177922707	177922837	ENSG00000128655.17|PDE11A|pc|chr2:177922707:177922837:-	0	-
#Deleted in new
chr2	177953110	177953281	ENSG00000236664.1|AC011998.3|lncRNA|chr2:177953110:177953281:-	0	-
#Deleted in new
chr2	17797564	17797898	ENSG00000163029.15|SMC6|pc|chr2:17797564:17797898:-	0	-
#Deleted in new
chr2	178108253	178108339	ENSG00000284741.1|PDE11A|pc|chr2:178108253:178108339:-	0	-
#Deleted in new
chr21	7829886	7829926	ENSG00000276289.4|KCNE1B|pc|chr21:7829886:7829926:-	0	-
#Deleted in new
chr2	178323569	178323780	ENSG00000079156.16|OSBPL6|pc|chr2:178323569:178323780:+	0	+
#Deleted in new
chr2	178418510	178419123	ENSG00000223960.6|AC009948.1|lncRNA|chr2:178418510:178419123:+	0	+
#Deleted in new
chr2	178426365	178426505	ENSG00000223960.6|AC009948.1|lncRNA|chr2:178426365:178426505:+	0	+
#Deleted in new
chr2	178426365	178426661	ENSG00000223960.6|AC009948.1|lncRNA|chr2:178426365:178426661:+	0	+
#Deleted in new
chr2	178426365	178426703	ENSG00000223960.6|AC009948.1|lncRNA|chr2:178426365:178426703:+	0	+
#Deleted in new
chr2	178430655	178430824	ENSG00000223960.6|AC009948.1|lncRNA|chr2:178430655:178430824:+	0	+
#Deleted in new
chr2	178430677	178430889	ENSG00000223960.6|AC009948.1|lncRNA|chr2:178430677:178430889:+	0	+
#Deleted in new
chr2	178430694	178430889	ENSG00000223960.6|AC009948.1|lncRNA|chr2:178430694:178430889:+	0	+
#Deleted in new
chr2	178430769	178430889	ENSG00000223960.6|AC009948.1|lncRNA|chr2:178430769:178430889:+	0	+
#Partially deleted in new
chr2	178431046	178431341	ENSG00000223960.6|AC009948.1|lncRNA|chr2:178431046:178431341:+	0	+
#Partially deleted in new
chr2	178438866	178440243	ENSG00000223960.6|AC009948.1|lncRNA|chr2:178438866:178440243:+	0	+
#Deleted in new
chr2	178467806	178467896	ENSG00000079150.17|FKBP7|pc|chr2:178467806:178467896:-	0	-
#Deleted in new
chr2	178488967	178489014	ENSG00000116095.10|PLEKHA3|pc|chr2:178488967:178489014:+	0	+
#Deleted in new
chr2	178502335	178502483	ENSG00000116095.10|PLEKHA3|pc|chr2:178502335:178502483:+	0	+
#Partially deleted in new
chr2	178503759	178516462	ENSG00000116095.10|PLEKHA3|pc|chr2:178503759:178516462:+	0	+
#Deleted in new
chr2	178521792	178522168	ENSG00000237298.9|TTN-AS1|lncRNA|chr2:178521792:178522168:+	0	+
#Partially deleted in new
chr2	178600557	178600572	ENSG00000237298.9|TTN-AS1|lncRNA|chr2:178600557:178600572:+	0	+
#Duplicated in new
chr2	178663432	178663516	ENSG00000155657.26|TTN|pc|chr2:178663432:178663516:-	0	-
#Deleted in new
chr2	178737306	178737443	ENSG00000237298.9|TTN-AS1|lncRNA|chr2:178737306:178737443:+	0	+
#Deleted in new
chr2	178737321	178737443	ENSG00000237298.9|TTN-AS1|lncRNA|chr2:178737321:178737443:+	0	+
#Partially deleted in new
chr2	178760939	178761014	ENSG00000237298.9|TTN-AS1|lncRNA|chr2:178760939:178761014:+	0	+
#Deleted in new
chr2	179162482	179162511	ENSG00000187231.13|SESTD1|pc|chr2:179162482:179162511:-	0	-
#Deleted in new
chr2	17919407	17919635	ENSG00000170745.11|KCNS3|pc|chr2:17919407:17919635:+	0	+
#Deleted in new
chr2	179285453	179285707	ENSG00000237477.1|AC093911.1|lncRNA|chr2:179285453:179285707:+	0	+
#Deleted in new
chr2	179534706	179534788	ENSG00000144331.18|ZNF385B|pc|chr2:179534706:179534788:-	0	-
#Deleted in new
chr2	1795524	1795734	ENSG00000284600.1|AC093390.2|lncRNA|chr2:1795524:1795734:+	0	+
#Deleted in new
chr2	1795609	1795734	ENSG00000284600.1|AC093390.2|lncRNA|chr2:1795609:1795734:+	0	+
#Deleted in new
chr2	1800166	1800302	ENSG00000284600.1|AC093390.2|lncRNA|chr2:1800166:1800302:+	0	+
#Deleted in new
chr2	180571711	180571831	ENSG00000225258.1|AC009478.1|lncRNA|chr2:180571711:180571831:-	0	-
#Partially deleted in new
chr2	180692103	180692441	ENSG00000281131.1|SCHLAP1|lncRNA|chr2:180692103:180692441:+	0	+
#Partially deleted in new
chr2	180692229	180692454	ENSG00000225258.1|AC009478.1|lncRNA|chr2:180692229:180692454:-	0	-
#Deleted in new
chr2	180827240	180827507	ENSG00000281131.1|SCHLAP1|lncRNA|chr2:180827240:180827507:+	0	+
#Deleted in new
chr2	180899649	180899718	ENSG00000281131.1|SCHLAP1|lncRNA|chr2:180899649:180899718:+	0	+
#Deleted in new
chr2	180916272	180916939	ENSG00000281131.1|SCHLAP1|lncRNA|chr2:180916272:180916939:+	0	+
#Deleted in new
chr2	1809779	1810100	ENSG00000284600.1|AC093390.2|lncRNA|chr2:1809779:1810100:+	0	+
#Partially deleted in new
chr21	8101250	8103706	ENSG00000279967.1|FP671120.2|lncRNA|chr21:8101250:8103706:-	0	-
#Deleted in new
chr2	181101931	181102032	ENSG00000234663.5|LINC01934|lncRNA|chr2:181101931:181102032:+	0	+
#Deleted in new
chr2	181103478	181103556	ENSG00000238171.1|AC068196.1|lncRNA|chr2:181103478:181103556:-	0	-
#Deleted in new
chr2	1811073	1811207	ENSG00000284600.1|AC093390.2|lncRNA|chr2:1811073:1811207:+	0	+
#Deleted in new
chr2	181111981	181112057	ENSG00000234663.5|LINC01934|lncRNA|chr2:181111981:181112057:+	0	+
#Deleted in new
chr2	181226470	181226535	ENSG00000234663.5|LINC01934|lncRNA|chr2:181226470:181226535:+	0	+
#Deleted in new
chr2	181238250	181238450	ENSG00000234663.5|LINC01934|lncRNA|chr2:181238250:181238450:+	0	+
#Deleted in new
chr2	181262828	181262977	ENSG00000234663.5|LINC01934|lncRNA|chr2:181262828:181262977:+	0	+
#Deleted in new
chr2	181339671	181339776	ENSG00000234663.5|LINC01934|lncRNA|chr2:181339671:181339776:+	0	+
#Partially deleted in new
chr2	181341045	181341129	ENSG00000234663.5|LINC01934|lncRNA|chr2:181341045:181341129:+	0	+
#Deleted in new
chr2	181362686	181362911	ENSG00000234663.5|LINC01934|lncRNA|chr2:181362686:181362911:+	0	+
#Deleted in new
chr2	181362686	181362918	ENSG00000234663.5|LINC01934|lncRNA|chr2:181362686:181362918:+	0	+
#Partially deleted in new
chr2	181422153	181422392	ENSG00000226681.1|AC020595.1|lncRNA|chr2:181422153:181422392:-	0	-
#Deleted in new
chr2	181425455	181425749	ENSG00000226681.1|AC020595.1|lncRNA|chr2:181425455:181425749:-	0	-
#Partially deleted in new
chr2	181537404	181538244	ENSG00000188452.13|CERKL|pc|chr2:181537404:181538244:-	0	-
#Deleted in new
chr2	1816180	1817016	ENSG00000186487.17|MYT1L|pc|chr2:1816180:1817016:-	0	-
#Deleted in new
chr2	181649579	181649736	ENSG00000188452.13|CERKL|pc|chr2:181649579:181649736:-	0	-
#Deleted in new
chr2	181649959	181650077	ENSG00000188452.13|CERKL|pc|chr2:181649959:181650077:-	0	-
#Deleted in new
chr2	181690379	181691206	ENSG00000225570.1|AC013733.1|lncRNA|chr2:181690379:181691206:-	0	-
#Deleted in new
chr2	181693257	181693415	ENSG00000225570.1|AC013733.1|lncRNA|chr2:181693257:181693415:-	0	-
#Deleted in new
chr21	8197619	8197927	ENSG00000278996.1|FP671120.1|lncRNA|chr21:8197619:8197927:+	0	+
#Deleted in new
chr21	8200737	8201052	ENSG00000278996.1|FP671120.1|lncRNA|chr21:8200737:8201052:+	0	+
#Deleted in new
chr2	182023821	182023913	ENSG00000150722.10|PPP1R1C|pc|chr2:182023821:182023913:+	0	+
#Deleted in new
chr2	182030882	182030979	ENSG00000150722.10|PPP1R1C|pc|chr2:182030882:182030979:+	0	+
#Deleted in new
chr21	8210383	8211306	ENSG00000280800.1|FP671120.3|lncRNA|chr21:8210383:8211306:-	0	-
#Deleted in new
chr21	8222960	8223057	ENSG00000278996.1|FP671120.1|lncRNA|chr21:8222960:8223057:+	0	+
#Deleted in new
chr21	8223184	8224185	ENSG00000278996.1|FP671120.1|lncRNA|chr21:8223184:8224185:+	0	+
#Deleted in new
chr21	8224346	8224438	ENSG00000278996.1|FP671120.1|lncRNA|chr21:8224346:8224438:+	0	+
#Deleted in new
chr21	8226173	8226391	ENSG00000278996.1|FP671120.1|lncRNA|chr21:8226173:8226391:+	0	+
#Deleted in new
chr21	8227179	8227646	ENSG00000278996.1|FP671120.1|lncRNA|chr21:8227179:8227646:+	0	+
#Deleted in new
chr2	1824411	1826097	ENSG00000232057.1|AC093390.1|lncRNA|chr2:1824411:1826097:+	0	+
#Deleted in new
chr21	8254591	8255514	ENSG00000281383.1|FP671120.4|lncRNA|chr21:8254591:8255514:-	0	-
#Deleted in new
chr2	1826950	1828667	ENSG00000232057.1|AC093390.1|lncRNA|chr2:1826950:1828667:+	0	+
#Partially deleted in new
chr2	182752548	182752623	ENSG00000077232.17|DNAJC10|pc|chr2:182752548:182752623:+	0	+
#Split in new
chr2	182777120	182794464	ENSG00000077232.17|DNAJC10|pc|chr2:182777120:182794464:+	0	+
#Deleted in new
chr2	182947026	182947162	ENSG00000061676.14|NCKAP1|pc|chr2:182947026:182947162:-	0	-
#Partially deleted in new
chr2	183095430	183100005	ENSG00000162999.12|DUSP19|pc|chr2:183095430:183100005:+	0	+
#Deleted in new
chr2	183107491	183107703	ENSG00000224643.5|AC064871.1|lncRNA|chr2:183107491:183107703:-	0	-
#Deleted in new
chr2	183118326	183118408	ENSG00000163002.12|NUP35|pc|chr2:183118326:183118408:+	0	+
#Deleted in new
chr2	183118590	183118742	ENSG00000163002.12|NUP35|pc|chr2:183118590:183118742:+	0	+
#Deleted in new
chr2	183118590	183118939	ENSG00000163002.12|NUP35|pc|chr2:183118590:183118939:+	0	+
#Deleted in new
chr2	183120005	183120062	ENSG00000163002.12|NUP35|pc|chr2:183120005:183120062:+	0	+
#Deleted in new
chr2	183120005	183120114	ENSG00000163002.12|NUP35|pc|chr2:183120005:183120114:+	0	+
#Deleted in new
chr2	183130994	183131117	ENSG00000163002.12|NUP35|pc|chr2:183130994:183131117:+	0	+
#Deleted in new
chr2	183130994	183131352	ENSG00000163002.12|NUP35|pc|chr2:183130994:183131352:+	0	+
#Deleted in new
chr2	18361566	18361616	ENSG00000170745.11|KCNS3|pc|chr2:18361566:18361616:+	0	+
#Deleted in new
chr21	8380664	8380972	ENSG00000280441.2|FP236383.1|lncRNA|chr21:8380664:8380972:+	0	+
#Deleted in new
chr21	8383783	8384098	ENSG00000280441.2|FP236383.1|lncRNA|chr21:8383783:8384098:+	0	+
#Deleted in new
chr21	8393418	8394341	ENSG00000280614.1|FP236383.2|lncRNA|chr21:8393418:8394341:-	0	-
#Deleted in new
chr21	8405959	8406056	ENSG00000280441.2|FP236383.1|lncRNA|chr21:8405959:8406056:+	0	+
#Deleted in new
chr21	8406183	8407184	ENSG00000280441.2|FP236383.1|lncRNA|chr21:8406183:8407184:+	0	+
#Deleted in new
chr21	8407345	8407437	ENSG00000280441.2|FP236383.1|lncRNA|chr21:8407345:8407437:+	0	+
#Partially deleted in new
chr2	1840759	1842907	ENSG00000186487.17|MYT1L|pc|chr2:1840759:1842907:-	0	-
#Deleted in new
chr21	8409172	8409390	ENSG00000280441.2|FP236383.1|lncRNA|chr21:8409172:8409390:+	0	+
#Deleted in new
chr21	8410178	8410645	ENSG00000280441.2|FP236383.1|lncRNA|chr21:8410178:8410645:+	0	+
#Deleted in new
chr2	1842768	1842886	ENSG00000186487.17|MYT1L|pc|chr2:1842768:1842886:-	0	-
#Deleted in new
chr21	8437628	8438551	ENSG00000281181.1|FP236383.3|lncRNA|chr21:8437628:8438551:-	0	-
#Deleted in new
chr2	185719873	185720720	ENSG00000226747.6|AC007966.1|lncRNA|chr2:185719873:185720720:-	0	-
#Deleted in new
chr2	185720211	185720720	ENSG00000226747.6|AC007966.1|lncRNA|chr2:185720211:185720720:-	0	-
#Deleted in new
chr2	185729328	185729437	ENSG00000226747.6|AC007966.1|lncRNA|chr2:185729328:185729437:-	0	-
#Deleted in new
chr2	185736061	185736132	ENSG00000226747.6|AC007966.1|lncRNA|chr2:185736061:185736132:-	0	-
#Deleted in new
chr2	185736061	185736137	ENSG00000226747.6|AC007966.1|lncRNA|chr2:185736061:185736137:-	0	-
#Partially deleted in new
chr2	185764501	185766549	ENSG00000188738.14|FSIP2|pc|chr2:185764501:185766549:+	0	+
#Deleted in new
chr2	185783690	185784130	ENSG00000231646.5|FSIP2-AS1|lncRNA|chr2:185783690:185784130:-	0	-
#Deleted in new
chr2	186038330	186038432	ENSG00000237877.6|LINC01473|lncRNA|chr2:186038330:186038432:-	0	-
#Deleted in new
chr2	186660493	186660581	ENSG00000227227.1|AC017101.1|lncRNA|chr2:186660493:186660581:-	0	-
#Deleted in new
chr2	187191834	187191931	ENSG00000224063.5|AC007319.1|lncRNA|chr2:187191834:187191931:+	0	+
#Deleted in new
chr2	187428336	187428889	ENSG00000064989.12|CALCRL|pc|chr2:187428336:187428889:-	0	-
#Deleted in new
chr2	187441922	187442059	ENSG00000064989.12|CALCRL|pc|chr2:187441922:187442059:-	0	-
#Partially deleted in new
chr2	187464229	187467042	ENSG00000003436.15|TFPI|pc|chr2:187464229:187467042:-	0	-
#Partially deleted in new
chr2	187464260	187467042	ENSG00000003436.15|TFPI|pc|chr2:187464260:187467042:-	0	-
#Deleted in new
chr2	187488336	187488375	ENSG00000003436.15|TFPI|pc|chr2:187488336:187488375:-	0	-
#Deleted in new
chr2	187499505	187499605	ENSG00000224063.5|AC007319.1|lncRNA|chr2:187499505:187499605:+	0	+
#Deleted in new
chr2	187513615	187513641	ENSG00000003436.15|TFPI|pc|chr2:187513615:187513641:-	0	-
#Deleted in new
chr2	187513615	187513646	ENSG00000003436.15|TFPI|pc|chr2:187513615:187513646:-	0	-
#Deleted in new
chr2	187513615	187513653	ENSG00000003436.15|TFPI|pc|chr2:187513615:187513653:-	0	-
#Deleted in new
chr2	187513615	187519860	ENSG00000003436.15|TFPI|pc|chr2:187513615:187519860:-	0	-
#Deleted in new
chr2	187520541	187520613	ENSG00000003436.15|TFPI|pc|chr2:187520541:187520613:-	0	-
#Deleted in new
chr2	187544503	187544637	ENSG00000003436.15|TFPI|pc|chr2:187544503:187544637:-	0	-
#Deleted in new
chr2	187546728	187546839	ENSG00000224063.5|AC007319.1|lncRNA|chr2:187546728:187546839:+	0	+
#Deleted in new
chr2	187547077	187547163	ENSG00000224063.5|AC007319.1|lncRNA|chr2:187547077:187547163:+	0	+
#Deleted in new
chr2	187547482	187547707	ENSG00000224063.5|AC007319.1|lncRNA|chr2:187547482:187547707:+	0	+
#Deleted in new
chr2	187554148	187554191	ENSG00000224063.5|AC007319.1|lncRNA|chr2:187554148:187554191:+	0	+
#Deleted in new
chr2	187554199	187554349	ENSG00000003436.15|TFPI|pc|chr2:187554199:187554349:-	0	-
#Deleted in new
chr2	187554199	187554351	ENSG00000003436.15|TFPI|pc|chr2:187554199:187554351:-	0	-
#Deleted in new
chr2	187554199	187554431	ENSG00000003436.15|TFPI|pc|chr2:187554199:187554431:-	0	-
#Deleted in new
chr2	187554199	187554438	ENSG00000003436.15|TFPI|pc|chr2:187554199:187554438:-	0	-
#Deleted in new
chr2	187554199	187554461	ENSG00000003436.15|TFPI|pc|chr2:187554199:187554461:-	0	-
#Deleted in new
chr2	187554199	187554492	ENSG00000003436.15|TFPI|pc|chr2:187554199:187554492:-	0	-
#Deleted in new
chr2	187554275	187554393	ENSG00000224063.5|AC007319.1|lncRNA|chr2:187554275:187554393:+	0	+
#Deleted in new
chr2	187554576	187554663	ENSG00000224063.5|AC007319.1|lncRNA|chr2:187554576:187554663:+	0	+
#Deleted in new
chr2	187565549	187565760	ENSG00000003436.15|TFPI|pc|chr2:187565549:187565760:-	0	-
#Deleted in new
chr21	8759076	8759861	ENSG00000279579.3|LINC01666|lncRNA|chr21:8759076:8759861:+	0	+
#Deleted in new
chr21	8759080	8759261	ENSG00000279579.3|LINC01666|lncRNA|chr21:8759080:8759261:+	0	+
#Deleted in new
chr21	8761275	8761335	ENSG00000279579.3|LINC01666|lncRNA|chr21:8761275:8761335:+	0	+
#Deleted in new
chr2	187712815	187712879	ENSG00000231689.2|LINC01090|lncRNA|chr2:187712815:187712879:-	0	-
#Deleted in new
chr2	18784806	18784915	ENSG00000224626.1|AC106053.1|lncRNA|chr2:18784806:18784915:+	0	+
#Deleted in new
chr2	188035595	188035711	ENSG00000231689.2|LINC01090|lncRNA|chr2:188035595:188035711:-	0	-
#Deleted in new
chr2	188139636	188139740	ENSG00000231689.2|LINC01090|lncRNA|chr2:188139636:188139740:-	0	-
#Deleted in new
chr2	188165753	188165908	ENSG00000231689.2|LINC01090|lncRNA|chr2:188165753:188165908:-	0	-
#Deleted in new
chr2	188186985	188187053	ENSG00000231689.2|LINC01090|lncRNA|chr2:188186985:188187053:-	0	-
#Deleted in new
chr2	188189069	188189128	ENSG00000231689.2|LINC01090|lncRNA|chr2:188189069:188189128:-	0	-
#Deleted in new
chr2	188287466	188287634	ENSG00000231689.2|LINC01090|lncRNA|chr2:188287466:188287634:-	0	-
#Deleted in new
chr2	188287466	188287691	ENSG00000231689.2|LINC01090|lncRNA|chr2:188287466:188287691:-	0	-
#Deleted in new
chr2	188383762	188383889	ENSG00000144366.15|GULP1|pc|chr2:188383762:188383889:+	0	+
#Deleted in new
chr2	188384233	188384313	ENSG00000231689.2|LINC01090|lncRNA|chr2:188384233:188384313:-	0	-
#Deleted in new
chr2	188466474	188466568	ENSG00000144366.15|GULP1|pc|chr2:188466474:188466568:+	0	+
#Deleted in new
chr2	188582340	188582565	ENSG00000144366.15|GULP1|pc|chr2:188582340:188582565:+	0	+
#Deleted in new
chr2	188603659	188603757	ENSG00000223523.1|AC092598.1|lncRNA|chr2:188603659:188603757:-	0	-
#Deleted in new
chr2	188647203	188647277	ENSG00000223523.1|AC092598.1|lncRNA|chr2:188647203:188647277:-	0	-
#Deleted in new
chr2	188656383	188656556	ENSG00000223523.1|AC092598.1|lncRNA|chr2:188656383:188656556:-	0	-
#Deleted in new
chr2	188746423	188746481	ENSG00000223523.1|AC092598.1|lncRNA|chr2:188746423:188746481:-	0	-
#Deleted in new
chr2	188839285	188839445	ENSG00000223523.1|AC092598.1|lncRNA|chr2:188839285:188839445:-	0	-
#Partially deleted in new
chr2	189674289	189674830	ENSG00000151687.14|ANKAR|pc|chr2:189674289:189674830:+	0	+
#Deleted in new
chr2	189675984	189676037	ENSG00000151687.14|ANKAR|pc|chr2:189675984:189676037:+	0	+
#Deleted in new
chr2	189763858	189764456	ENSG00000273240.1|AC013468.1|lncRNA|chr2:189763858:189764456:-	0	-
#Deleted in new
chr2	189764854	189764975	ENSG00000253559.1|OSGEPL1-AS1|lncRNA|chr2:189764854:189764975:+	0	+
#Partially deleted in new
chr2	189764854	189765226	ENSG00000253559.1|OSGEPL1-AS1|lncRNA|chr2:189764854:189765226:+	0	+
#Partially deleted in new
chr2	189764854	189765327	ENSG00000253559.1|OSGEPL1-AS1|lncRNA|chr2:189764854:189765327:+	0	+
#Partially deleted in new
chr2	189783013	189783123	ENSG00000128699.13|ORMDL1|pc|chr2:189783013:189783123:-	0	-
#Deleted in new
chr2	189864353	189864359	ENSG00000064933.17|PMS1|pc|chr2:189864353:189864359:+	0	+
#Deleted in new
chr2	18995318	18995364	ENSG00000236204.5|LINC01376|lncRNA|chr2:18995318:18995364:-	0	-
#Deleted in new
chr2	190079222	190079570	ENSG00000187699.10|C2orf88|pc|chr2:190079222:190079570:+	0	+
#Deleted in new
chr2	190150245	190150448	ENSG00000187699.10|C2orf88|pc|chr2:190150245:190150448:+	0	+
#Deleted in new
chr2	190163935	190164051	ENSG00000187699.10|C2orf88|pc|chr2:190163935:190164051:+	0	+
#Deleted in new
chr2	190163935	190164060	ENSG00000187699.10|C2orf88|pc|chr2:190163935:190164060:+	0	+
#Deleted in new
chr2	190189734	190189997	ENSG00000198130.15|HIBCH|pc|chr2:190189734:190189997:-	0	-
#Partially deleted in new
chr2	190212955	190216109	ENSG00000198130.15|HIBCH|pc|chr2:190212955:190216109:-	0	-
#Deleted in new
chr2	190251491	190251558	ENSG00000198130.15|HIBCH|pc|chr2:190251491:190251558:-	0	-
#Deleted in new
chr2	190279801	190280052	ENSG00000198130.15|HIBCH|pc|chr2:190279801:190280052:-	0	-
#Deleted in new
chr2	190280930	190281068	ENSG00000198130.15|HIBCH|pc|chr2:190280930:190281068:-	0	-
#Deleted in new
chr2	190280930	190281093	ENSG00000198130.15|HIBCH|pc|chr2:190280930:190281093:-	0	-
#Deleted in new
chr2	190280930	190281097	ENSG00000198130.15|HIBCH|pc|chr2:190280930:190281097:-	0	-
#Partially deleted in new
chr2	190415291	190415413	ENSG00000151690.14|MFSD6|pc|chr2:190415291:190415413:+	0	+
#Partially deleted in new
chr2	190454091	190454521	ENSG00000272979.1|AC093388.1|lncRNA|chr2:190454091:190454521:-	0	-
#Deleted in new
chr2	190504995	190505121	ENSG00000151690.14|MFSD6|pc|chr2:190504995:190505121:+	0	+
#Deleted in new
chr2	190534854	190535121	ENSG00000233654.1|AC108047.1|lncRNA|chr2:190534854:190535121:+	0	+
#Deleted in new
chr2	190568072	190568102	ENSG00000233654.1|AC108047.1|lncRNA|chr2:190568072:190568102:+	0	+
#Deleted in new
chr2	190607659	190610996	ENSG00000284052.1|AC006460.2|lncRNA|chr2:190607659:190610996:-	0	-
#Deleted in new
chr2	190616842	190617118	ENSG00000284052.1|AC006460.2|lncRNA|chr2:190616842:190617118:-	0	-
#Partially deleted in new
chr2	190628068	190628715	ENSG00000284052.1|AC006460.2|lncRNA|chr2:190628068:190628715:-	0	-
#Partially deleted in new
chr2	190628194	190628715	ENSG00000284052.1|AC006460.2|lncRNA|chr2:190628194:190628715:-	0	-
#Deleted in new
chr2	190629750	190629825	ENSG00000284052.1|AC006460.2|lncRNA|chr2:190629750:190629825:-	0	-
#Partially deleted in new
chr2	19065980	19066134	ENSG00000236204.5|LINC01376|lncRNA|chr2:19065980:19066134:-	0	-
#Deleted in new
chr2	190708633	190708716	ENSG00000228509.5|AC006460.1|lncRNA|chr2:190708633:190708716:-	0	-
#Deleted in new
chr2	19084926	19085025	ENSG00000236204.5|LINC01376|lncRNA|chr2:19084926:19085025:-	0	-
#Deleted in new
chr2	191377521	191377917	ENSG00000128641.18|MYO1B|pc|chr2:191377521:191377917:+	0	+
#Partially deleted in new
chr2	191387223	191388276	ENSG00000128641.18|MYO1B|pc|chr2:191387223:191388276:+	0	+
#Deleted in new
chr2	191684876	191685076	ENSG00000173559.12|NABP1|pc|chr2:191684876:191685076:+	0	+
#Partially deleted in new
chr2	191922545	191923044	ENSG00000233766.7|AC098617.1|lncRNA|chr2:191922545:191923044:+	0	+
#Deleted in new
chr2	192027871	192027953	ENSG00000233766.7|AC098617.1|lncRNA|chr2:192027871:192027953:+	0	+
#Deleted in new
chr2	192028569	192029398	ENSG00000233766.7|AC098617.1|lncRNA|chr2:192028569:192029398:+	0	+
#Deleted in new
chr2	192028902	192029036	ENSG00000233766.7|AC098617.1|lncRNA|chr2:192028902:192029036:+	0	+
#Deleted in new
chr2	192030337	192030680	ENSG00000233766.7|AC098617.1|lncRNA|chr2:192030337:192030680:+	0	+
#Deleted in new
chr2	192030581	192030628	ENSG00000233766.7|AC098617.1|lncRNA|chr2:192030581:192030628:+	0	+
#Deleted in new
chr2	192030581	192030680	ENSG00000233766.7|AC098617.1|lncRNA|chr2:192030581:192030680:+	0	+
#Deleted in new
chr2	192030604	192030680	ENSG00000233766.7|AC098617.1|lncRNA|chr2:192030604:192030680:+	0	+
#Deleted in new
chr2	192030604	192030707	ENSG00000233766.7|AC098617.1|lncRNA|chr2:192030604:192030707:+	0	+
#Deleted in new
chr2	192030608	192030680	ENSG00000233766.7|AC098617.1|lncRNA|chr2:192030608:192030680:+	0	+
#Deleted in new
chr2	192030612	192030680	ENSG00000233766.7|AC098617.1|lncRNA|chr2:192030612:192030680:+	0	+
#Deleted in new
chr2	192043656	192044525	ENSG00000233766.7|AC098617.1|lncRNA|chr2:192043656:192044525:+	0	+
#Deleted in new
chr2	192629918	192630014	ENSG00000229395.1|AC062039.1|lncRNA|chr2:192629918:192630014:+	0	+
#Deleted in new
chr2	192645237	192645706	ENSG00000229395.1|AC062039.1|lncRNA|chr2:192645237:192645706:+	0	+
#Deleted in new
chr2	192645267	192645387	ENSG00000232227.5|AC013401.1|lncRNA|chr2:192645267:192645387:-	0	-
#Deleted in new
chr2	192645304	192645383	ENSG00000232227.5|AC013401.1|lncRNA|chr2:192645304:192645383:-	0	-
#Deleted in new
chr2	192753723	192753845	ENSG00000227418.6|PCGEM1|lncRNA|chr2:192753723:192753845:+	0	+
#Deleted in new
chr2	19305822	19306037	ENSG00000236204.5|LINC01376|lncRNA|chr2:19305822:19306037:-	0	-
#Deleted in new
chr2	19305822	19306054	ENSG00000236204.5|LINC01376|lncRNA|chr2:19305822:19306054:-	0	-
#Deleted in new
chr21	9325012	9325100	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9325012:9325100:+	0	+
#Deleted in new
chr21	9325023	9325223	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9325023:9325223:+	0	+
#Deleted in new
chr21	9325038	9325223	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9325038:9325223:+	0	+
#Deleted in new
chr21	9325051	9325100	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9325051:9325100:+	0	+
#Deleted in new
chr21	9325058	9325100	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9325058:9325100:+	0	+
#Deleted in new
chr21	9325366	9325823	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9325366:9325823:+	0	+
#Deleted in new
chr21	9325604	9325823	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9325604:9325823:+	0	+
#Deleted in new
chr21	9325630	9325823	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9325630:9325823:+	0	+
#Deleted in new
chr21	9325873	9325961	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9325873:9325961:+	0	+
#Deleted in new
chr21	9327239	9327298	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9327239:9327298:+	0	+
#Deleted in new
chr21	9327239	9327299	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9327239:9327299:+	0	+
#Deleted in new
chr21	9327239	9327777	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9327239:9327777:+	0	+
#Deleted in new
chr21	9331230	9331290	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9331230:9331290:+	0	+
#Deleted in new
chr21	9343507	9343532	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9343507:9343532:+	0	+
#Deleted in new
chr2	19346643	19346748	ENSG00000236204.5|LINC01376|lncRNA|chr2:19346643:19346748:-	0	-
#Deleted in new
chr21	9354230	9354319	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9354230:9354319:+	0	+
#Deleted in new
chr21	9367173	9367275	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9367173:9367275:+	0	+
#Deleted in new
chr21	9368465	9368775	ENSG00000278932.3|CR381653.1|lncRNA|chr21:9368465:9368775:+	0	+
#Deleted in new
chr2	194344268	194344319	ENSG00000225539.5|LINC01821|lncRNA|chr2:194344268:194344319:+	0	+
#Deleted in new
chr2	194344281	194344319	ENSG00000225539.5|LINC01821|lncRNA|chr2:194344281:194344319:+	0	+
#Deleted in new
chr2	194368840	194369072	ENSG00000225539.5|LINC01821|lncRNA|chr2:194368840:194369072:+	0	+
#Deleted in new
chr2	194374135	194374262	ENSG00000225539.5|LINC01821|lncRNA|chr2:194374135:194374262:+	0	+
#Deleted in new
chr2	194377211	194377337	ENSG00000225539.5|LINC01821|lncRNA|chr2:194377211:194377337:+	0	+
#Deleted in new
chr2	194386160	194386506	ENSG00000225539.5|LINC01821|lncRNA|chr2:194386160:194386506:+	0	+
#Deleted in new
chr2	194390838	194390927	ENSG00000225539.5|LINC01821|lncRNA|chr2:194390838:194390927:+	0	+
#Partially deleted in new
chr2	194416195	194416418	ENSG00000225539.5|LINC01821|lncRNA|chr2:194416195:194416418:+	0	+
#Deleted in new
chr2	194419307	194419645	ENSG00000225539.5|LINC01821|lncRNA|chr2:194419307:194419645:+	0	+
#Partially deleted in new
chr2	19469020	19469430	ENSG00000237992.2|LINC01808|lncRNA|chr2:19469020:19469430:+	0	+
#Deleted in new
chr2	194736024	194736326	ENSG00000230173.1|LINC01790|lncRNA|chr2:194736024:194736326:+	0	+
#Deleted in new
chr2	195026224	195026370	ENSG00000235056.1|AC010983.1|lncRNA|chr2:195026224:195026370:-	0	-
#Deleted in new
chr2	195448531	195448612	ENSG00000224099.1|AC104823.1|lncRNA|chr2:195448531:195448612:+	0	+
#Deleted in new
chr2	195451777	195451921	ENSG00000271893.1|AC064834.1|lncRNA|chr2:195451777:195451921:-	0	-
#Deleted in new
chr2	195458075	195458263	ENSG00000224099.1|AC104823.1|lncRNA|chr2:195458075:195458263:+	0	+
#Deleted in new
chr2	195515436	195515699	ENSG00000271893.1|AC064834.1|lncRNA|chr2:195515436:195515699:-	0	-
#Deleted in new
chr2	195572650	195572970	ENSG00000234919.1|LINC01827|lncRNA|chr2:195572650:195572970:-	0	-
#Deleted in new
chr2	195671656	195671720	ENSG00000196950.13|SLC39A10|pc|chr2:195671656:195671720:+	0	+
#Deleted in new
chr2	195795812	195795879	ENSG00000118997.13|DNAH7|pc|chr2:195795812:195795879:-	0	-
#Partially deleted in new
chr2	195824961	195825109	ENSG00000118997.13|DNAH7|pc|chr2:195824961:195825109:-	0	-
#Deleted in new
chr2	196151262	196151508	ENSG00000272211.1|AC114760.2|lncRNA|chr2:196151262:196151508:+	0	+
#Deleted in new
chr2	196165582	196165734	ENSG00000081320.10|STK17B|pc|chr2:196165582:196165734:-	0	-
#Deleted in new
chr2	196493243	196493375	ENSG00000138411.10|HECW2|pc|chr2:196493243:196493375:-	0	-
#Deleted in new
chr2	196773668	196773726	ENSG00000119041.10|GTF3C3|pc|chr2:196773668:196773726:-	0	-
#Partially deleted in new
chr2	196799239	196799254	ENSG00000119041.10|GTF3C3|pc|chr2:196799239:196799254:-	0	-
#Deleted in new
chr2	196831974	196832190	ENSG00000280176.1|AC012486.1|lncRNA|chr2:196831974:196832190:-	0	-
#Deleted in new
chr2	19717261	19717576	ENSG00000235911.1|AC019055.1|lncRNA|chr2:19717261:19717576:+	0	+
#Deleted in new
chr2	197197990	197198089	ENSG00000231621.1|AC013264.1|lncRNA|chr2:197197990:197198089:+	0	+
#Deleted in new
chr2	197198009	197198038	ENSG00000065413.18|ANKRD44|pc|chr2:197198009:197198038:-	0	-
#Partially deleted in new
chr2	197250857	197250992	ENSG00000236977.1|ANKRD44-IT1|lncRNA|chr2:197250857:197250992:-	0	-
#Deleted in new
chr2	197299481	197299535	ENSG00000236977.1|ANKRD44-IT1|lncRNA|chr2:197299481:197299535:-	0	-
#Deleted in new
chr2	197300962	197301413	ENSG00000236977.1|ANKRD44-IT1|lncRNA|chr2:197300962:197301413:-	0	-
#Deleted in new
chr2	197402420	197402452	ENSG00000115524.15|SF3B1|pc|chr2:197402420:197402452:-	0	-
#Partially deleted in new
chr2	197568	199901	ENSG00000227061.1|AC079779.1|lncRNA|chr2:197568:199901:+	0	+
#Deleted in new
chr2	197693105	197693216	ENSG00000222017.1|AC011997.1|lncRNA|chr2:197693105:197693216:+	0	+
#Deleted in new
chr2	197698809	197698864	ENSG00000222017.1|AC011997.1|lncRNA|chr2:197698809:197698864:+	0	+
#Partially deleted in new
chr2	197774015	197774823	ENSG00000222017.1|AC011997.1|lncRNA|chr2:197774015:197774823:+	0	+
#Deleted in new
chr2	198001951	198002008	ENSG00000115896.15|PLCL1|pc|chr2:198001951:198002008:+	0	+
#Deleted in new
chr21	9808173	9808361	ENSG00000280081.3|LINC01667|lncRNA|chr21:9808173:9808361:-	0	-
#Partially deleted in new
chr21	9809066	9809181	ENSG00000280081.3|LINC01667|lncRNA|chr21:9809066:9809181:-	0	-
#Deleted in new
chr21	9812426	9812602	ENSG00000280081.3|LINC01667|lncRNA|chr21:9812426:9812602:-	0	-
#Deleted in new
chr21	9813836	9814009	ENSG00000280081.3|LINC01667|lncRNA|chr21:9813836:9814009:-	0	-
#Deleted in new
chr2	198187801	198188106	ENSG00000237035.1|AC020719.1|lncRNA|chr2:198187801:198188106:-	0	-
#Deleted in new
chr2	198190963	198190999	ENSG00000237035.1|AC020719.1|lncRNA|chr2:198190963:198190999:-	0	-
#Deleted in new
chr2	198299362	198301816	ENSG00000236653.2|LINC01923|lncRNA|chr2:198299362:198301816:-	0	-
#Deleted in new
chr2	198301407	198301816	ENSG00000236653.2|LINC01923|lncRNA|chr2:198301407:198301816:-	0	-
#Deleted in new
chr2	198346828	198346907	ENSG00000115896.15|PLCL1|pc|chr2:198346828:198346907:+	0	+
#Deleted in new
chr2	198493241	198493346	ENSG00000225421.2|AC019330.1|lncRNA|chr2:198493241:198493346:-	0	-
#Partially deleted in new
chr2	198493776	198495213	ENSG00000225421.2|AC019330.1|lncRNA|chr2:198493776:198495213:-	0	-
#Deleted in new
chr2	198579646	198579708	ENSG00000225421.2|AC019330.1|lncRNA|chr2:198579646:198579708:-	0	-
#Deleted in new
chr2	19868859	19868952	ENSG00000228784.7|LINC00954|lncRNA|chr2:19868859:19868952:+	0	+
#Deleted in new
chr2	19868873	19868952	ENSG00000228784.7|LINC00954|lncRNA|chr2:19868873:19868952:+	0	+
#Deleted in new
chr2	19868890	19868952	ENSG00000228784.7|LINC00954|lncRNA|chr2:19868890:19868952:+	0	+
#Deleted in new
chr2	19869074	19869156	ENSG00000228784.7|LINC00954|lncRNA|chr2:19869074:19869156:+	0	+
#Deleted in new
chr2	19869495	19869613	ENSG00000228784.7|LINC00954|lncRNA|chr2:19869495:19869613:+	0	+
#Deleted in new
chr2	19870401	19870546	ENSG00000228784.7|LINC00954|lncRNA|chr2:19870401:19870546:+	0	+
#Deleted in new
chr2	19870424	19870546	ENSG00000228784.7|LINC00954|lncRNA|chr2:19870424:19870546:+	0	+
#Deleted in new
chr2	19872392	19872530	ENSG00000228784.7|LINC00954|lncRNA|chr2:19872392:19872530:+	0	+
#Deleted in new
chr2	19872392	19872596	ENSG00000228784.7|LINC00954|lncRNA|chr2:19872392:19872596:+	0	+
#Deleted in new
chr2	19873131	19873364	ENSG00000228784.7|LINC00954|lncRNA|chr2:19873131:19873364:+	0	+
#Deleted in new
chr2	19875802	19875943	ENSG00000228784.7|LINC00954|lncRNA|chr2:19875802:19875943:+	0	+
#Deleted in new
chr2	19875802	19877393	ENSG00000228784.7|LINC00954|lncRNA|chr2:19875802:19877393:+	0	+
#Deleted in new
chr2	19875802	19877535	ENSG00000228784.7|LINC00954|lncRNA|chr2:19875802:19877535:+	0	+
#Deleted in new
chr2	198772258	198772356	ENSG00000225421.2|AC019330.1|lncRNA|chr2:198772258:198772356:-	0	-
#Deleted in new
chr2	19879235	19880200	ENSG00000228784.7|LINC00954|lncRNA|chr2:19879235:19880200:+	0	+
#Deleted in new
chr2	19882614	19882735	ENSG00000228784.7|LINC00954|lncRNA|chr2:19882614:19882735:+	0	+
#Deleted in new
chr2	19883557	19883648	ENSG00000228784.7|LINC00954|lncRNA|chr2:19883557:19883648:+	0	+
#Partially deleted in new
chr2	198882572	198883014	ENSG00000231557.1|AC020718.1|lncRNA|chr2:198882572:198883014:-	0	-
#Deleted in new
chr2	19901029	19901641	ENSG00000183891.5|TTC32|pc|chr2:19901029:19901641:-	0	-
#Partially deleted in new
chr2	19902024	19902569	ENSG00000271991.1|AC013400.1|lncRNA|chr2:19902024:19902569:+	0	+
#Partially deleted in new
chr2	19910259	19913708	ENSG00000118965.14|WDR35|pc|chr2:19910259:19913708:-	0	-
#Duplicated in new
chr21	9913116	9913506	ENSG00000279321.1|AC018692.1|lncRNA|chr21:9913116:9913506:+	0	+
#Deleted in new
chr21	9914406	9914713	ENSG00000279321.1|AC018692.1|lncRNA|chr21:9914406:9914713:+	0	+
#Deleted in new
chr21	9914406	9914846	ENSG00000279321.1|AC018692.1|lncRNA|chr21:9914406:9914846:+	0	+
#Deleted in new
chr2	199476476	199476504	ENSG00000225953.2|SATB2-AS1|lncRNA|chr2:199476476:199476504:+	0	+
#Deleted in new
chr2	199608067	199608127	ENSG00000238217.5|LINC01877|lncRNA|chr2:199608067:199608127:+	0	+
#Partially deleted in new
chr2	199630245	199630487	ENSG00000238217.5|LINC01877|lncRNA|chr2:199630245:199630487:+	0	+
#Deleted in new
chr2	199846074	199846170	ENSG00000226124.6|FTCDNL1|pc|chr2:199846074:199846170:-	0	-
#Deleted in new
chr2	199850739	199851120	ENSG00000226124.6|FTCDNL1|pc|chr2:199850739:199851120:-	0	-
#Deleted in new
chr2	199850739	199851143	ENSG00000226124.6|FTCDNL1|pc|chr2:199850739:199851143:-	0	-
#Deleted in new
chr2	199850739	199851173	ENSG00000226124.6|FTCDNL1|pc|chr2:199850739:199851173:-	0	-
#Deleted in new
chr2	199850758	199850873	ENSG00000226124.6|FTCDNL1|pc|chr2:199850758:199850873:-	0	-
#Deleted in new
chr2	199878494	199878700	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199878494:199878700:-	0	-
#Deleted in new
chr2	199878498	199878700	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199878498:199878700:-	0	-
#Deleted in new
chr2	199878499	199878700	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199878499:199878700:-	0	-
#Deleted in new
chr2	199878499	199878713	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199878499:199878713:-	0	-
#Deleted in new
chr2	199878501	199878700	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199878501:199878700:-	0	-
#Deleted in new
chr2	199878508	199878700	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199878508:199878700:-	0	-
#Deleted in new
chr2	199878541	199878700	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199878541:199878700:-	0	-
#Deleted in new
chr2	199878567	199878713	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199878567:199878713:-	0	-
#Deleted in new
chr2	199878625	199878700	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199878625:199878700:-	0	-
#Deleted in new
chr2	199878928	199879610	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199878928:199879610:-	0	-
#Deleted in new
chr2	199879115	199879610	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199879115:199879610:-	0	-
#Deleted in new
chr2	199879125	199879610	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199879125:199879610:-	0	-
#Deleted in new
chr2	199879236	199879610	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199879236:199879610:-	0	-
#Deleted in new
chr2	199879382	199879797	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199879382:199879797:-	0	-
#Deleted in new
chr2	199879385	199879610	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199879385:199879610:-	0	-
#Deleted in new
chr2	199879405	199879610	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199879405:199879610:-	0	-
#Deleted in new
chr2	199879405	199879797	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199879405:199879797:-	0	-
#Deleted in new
chr2	199880496	199880598	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199880496:199880598:-	0	-
#Deleted in new
chr2	199880967	199881060	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199880967:199881060:-	0	-
#Deleted in new
chr2	199881893	199881991	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199881893:199881991:-	0	-
#Deleted in new
chr2	199893467	199893550	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199893467:199893550:-	0	-
#Deleted in new
chr2	199896504	199896605	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199896504:199896605:-	0	-
#Deleted in new
chr2	199896504	199897246	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199896504:199897246:-	0	-
#Deleted in new
chr2	199900225	199900729	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199900225:199900729:-	0	-
#Deleted in new
chr2	199900233	199900729	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199900233:199900729:-	0	-
#Deleted in new
chr2	199900371	199900729	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199900371:199900729:-	0	-
#Deleted in new
chr2	199900506	199900729	ENSG00000232732.9|AC097717.1|lncRNA|chr2:199900506:199900729:-	0	-
#Deleted in new
chr2	19999205	19999277	ENSG00000227210.1|AC079145.1|lncRNA|chr2:19999205:19999277:+	0	+
#Deleted in new
chr2	200005742	200005777	ENSG00000162972.10|MAIP1|pc|chr2:200005742:200005777:+	0	+
#Deleted in new
chr2	200008465	200008540	ENSG00000162972.10|MAIP1|pc|chr2:200008465:200008540:+	0	+
#Deleted in new
chr2	200163	202605	ENSG00000227061.1|AC079779.1|lncRNA|chr2:200163:202605:+	0	+
#Deleted in new
chr2	200460837	200461337	ENSG00000196141.13|SPATS2L|pc|chr2:200460837:200461337:+	0	+
#Partially deleted in new
chr2	200463252	200463370	ENSG00000196141.13|SPATS2L|pc|chr2:200463252:200463370:+	0	+
#Partially deleted in new
chr2	200495869	200497847	ENSG00000155729.12|KCTD18|pc|chr2:200495869:200497847:-	0	-
#Deleted in new
chr2	200519697	200519784	ENSG00000155729.12|KCTD18|pc|chr2:200519697:200519784:-	0	-
#Partially deleted in new
chr2	200531774	200531901	ENSG00000163535.17|SGO2|pc|chr2:200531774:200531901:+	0	+
#Deleted in new
chr2	20054284	20054496	ENSG00000223734.2|AC098828.2|lncRNA|chr2:20054284:20054496:+	0	+
#Partially deleted in new
chr2	200543024	200543622	ENSG00000163535.17|SGO2|pc|chr2:200543024:200543622:+	0	+
#Deleted in new
chr2	20063855	20064511	ENSG00000234378.1|AC098828.3|lncRNA|chr2:20063855:20064511:-	0	-
#Deleted in new
chr2	200716334	200716417	ENSG00000237166.1|LINC01792|lncRNA|chr2:200716334:200716417:-	0	-
#Deleted in new
chr2	200735036	200735177	ENSG00000237166.1|LINC01792|lncRNA|chr2:200735036:200735177:-	0	-
#Deleted in new
chr2	200884901	200885367	ENSG00000240344.8|PPIL3|pc|chr2:200884901:200885367:-	0	-
#Deleted in new
chr2	200885261	200885343	ENSG00000240344.8|PPIL3|pc|chr2:200885261:200885343:-	0	-
#Deleted in new
chr2	200885261	200885367	ENSG00000240344.8|PPIL3|pc|chr2:200885261:200885367:-	0	-
#Deleted in new
chr2	200885296	200885367	ENSG00000240344.8|PPIL3|pc|chr2:200885296:200885367:-	0	-
#Deleted in new
chr2	200886913	200886982	ENSG00000240344.8|PPIL3|pc|chr2:200886913:200886982:-	0	-
#Deleted in new
chr2	200888293	200888579	ENSG00000240344.8|PPIL3|pc|chr2:200888293:200888579:-	0	-
#Deleted in new
chr2	200890522	200890585	ENSG00000196290.14|NIF3L1|pc|chr2:200890522:200890585:+	0	+
#Partially deleted in new
chr2	200996049	200997540	ENSG00000155744.9|FAM126B|pc|chr2:200996049:200997540:-	0	-
#Deleted in new
chr2	201052172	201052269	ENSG00000155744.9|FAM126B|pc|chr2:201052172:201052269:-	0	-
#Deleted in new
chr2	201061306	201061424	ENSG00000155744.9|FAM126B|pc|chr2:201061306:201061424:-	0	-
#Deleted in new
chr2	20106739	20106829	ENSG00000234378.1|AC098828.3|lncRNA|chr2:20106739:20106829:-	0	-
#Deleted in new
chr2	201101381	201101885	ENSG00000232719.1|AC007272.1|lncRNA|chr2:201101381:201101885:+	0	+
#Deleted in new
chr2	201116103	201116481	ENSG00000003402.19|CFLAR|pc|chr2:201116103:201116481:+	0	+
#Deleted in new
chr2	201116153	201116481	ENSG00000003402.19|CFLAR|pc|chr2:201116153:201116481:+	0	+
#Deleted in new
chr2	201116166	201116481	ENSG00000003402.19|CFLAR|pc|chr2:201116166:201116481:+	0	+
#Deleted in new
chr2	201116206	201116481	ENSG00000003402.19|CFLAR|pc|chr2:201116206:201116481:+	0	+
#Deleted in new
chr2	201116238	201116481	ENSG00000003402.19|CFLAR|pc|chr2:201116238:201116481:+	0	+
#Deleted in new
chr2	201116406	201116481	ENSG00000003402.19|CFLAR|pc|chr2:201116406:201116481:+	0	+
#Deleted in new
chr2	201116836	201116967	ENSG00000003402.19|CFLAR|pc|chr2:201116836:201116967:+	0	+
#Deleted in new
chr2	201117038	201117142	ENSG00000003402.19|CFLAR|pc|chr2:201117038:201117142:+	0	+
#Deleted in new
chr2	201141373	201141407	ENSG00000003402.19|CFLAR|pc|chr2:201141373:201141407:+	0	+
#Deleted in new
chr2	201141373	201141598	ENSG00000003402.19|CFLAR|pc|chr2:201141373:201141598:+	0	+
#Deleted in new
chr2	201141373	201141602	ENSG00000003402.19|CFLAR|pc|chr2:201141373:201141602:+	0	+
#Deleted in new
chr2	201142644	201142762	ENSG00000003402.19|CFLAR|pc|chr2:201142644:201142762:+	0	+
#Deleted in new
chr2	201143346	201143469	ENSG00000226312.7|CFLAR-AS1|lncRNA|chr2:201143346:201143469:-	0	-
#Deleted in new
chr2	201147742	201147864	ENSG00000226312.7|CFLAR-AS1|lncRNA|chr2:201147742:201147864:-	0	-
#Partially deleted in new
chr2	201149753	201150355	ENSG00000003402.19|CFLAR|pc|chr2:201149753:201150355:+	0	+
#Partially deleted in new
chr2	201149855	201150489	ENSG00000226312.7|CFLAR-AS1|lncRNA|chr2:201149855:201150489:-	0	-
#Deleted in new
chr2	201150370	201150489	ENSG00000226312.7|CFLAR-AS1|lncRNA|chr2:201150370:201150489:-	0	-
#Deleted in new
chr2	201153310	201153673	ENSG00000226312.7|CFLAR-AS1|lncRNA|chr2:201153310:201153673:-	0	-
#Deleted in new
chr2	201154136	201154576	ENSG00000003402.19|CFLAR|pc|chr2:201154136:201154576:+	0	+
#Deleted in new
chr2	201162995	201163157	ENSG00000003402.19|CFLAR|pc|chr2:201162995:201163157:+	0	+
#Partially deleted in new
chr2	201163834	201176687	ENSG00000003402.19|CFLAR|pc|chr2:201163834:201176687:+	0	+
#Deleted in new
chr2	201166964	201167272	ENSG00000234431.2|AC007283.1|lncRNA|chr2:201166964:201167272:+	0	+
#Deleted in new
chr2	201167409	201167546	ENSG00000234431.2|AC007283.1|lncRNA|chr2:201167409:201167546:+	0	+
#Deleted in new
chr2	201182880	201183308	ENSG00000003400.14|CASP10|pc|chr2:201182880:201183308:+	0	+
#Deleted in new
chr2	201182897	201183308	ENSG00000003400.14|CASP10|pc|chr2:201182897:201183308:+	0	+
#Deleted in new
chr2	201183111	201183308	ENSG00000003400.14|CASP10|pc|chr2:201183111:201183308:+	0	+
#Deleted in new
chr2	201183131	201183308	ENSG00000003400.14|CASP10|pc|chr2:201183131:201183308:+	0	+
#Deleted in new
chr2	201183140	201183308	ENSG00000003400.14|CASP10|pc|chr2:201183140:201183308:+	0	+
#Deleted in new
chr2	201183159	201183308	ENSG00000003400.14|CASP10|pc|chr2:201183159:201183308:+	0	+
#Deleted in new
chr2	201183168	201183308	ENSG00000003400.14|CASP10|pc|chr2:201183168:201183308:+	0	+
#Deleted in new
chr2	201183191	201183308	ENSG00000003400.14|CASP10|pc|chr2:201183191:201183308:+	0	+
#Deleted in new
chr2	201183194	201183308	ENSG00000003400.14|CASP10|pc|chr2:201183194:201183308:+	0	+
#Deleted in new
chr2	201183215	201183308	ENSG00000003400.14|CASP10|pc|chr2:201183215:201183308:+	0	+
#Deleted in new
chr2	201185770	201186124	ENSG00000003400.14|CASP10|pc|chr2:201185770:201186124:+	0	+
#Deleted in new
chr2	201185770	201186380	ENSG00000003400.14|CASP10|pc|chr2:201185770:201186380:+	0	+
#Deleted in new
chr2	201185777	201186124	ENSG00000003400.14|CASP10|pc|chr2:201185777:201186124:+	0	+
#Deleted in new
chr2	201187679	201187799	ENSG00000003400.14|CASP10|pc|chr2:201187679:201187799:+	0	+
#Deleted in new
chr2	201187705	201187799	ENSG00000003400.14|CASP10|pc|chr2:201187705:201187799:+	0	+
#Deleted in new
chr2	201187745	201187799	ENSG00000003400.14|CASP10|pc|chr2:201187745:201187799:+	0	+
#Deleted in new
chr2	201192983	201193119	ENSG00000003400.14|CASP10|pc|chr2:201192983:201193119:+	0	+
#Deleted in new
chr2	201192983	201193403	ENSG00000003400.14|CASP10|pc|chr2:201192983:201193403:+	0	+
#Deleted in new
chr2	201195841	201195948	ENSG00000003400.14|CASP10|pc|chr2:201195841:201195948:+	0	+
#Deleted in new
chr2	201195841	201196015	ENSG00000003400.14|CASP10|pc|chr2:201195841:201196015:+	0	+
#Deleted in new
chr2	201203729	201203766	ENSG00000003400.14|CASP10|pc|chr2:201203729:201203766:+	0	+
#Deleted in new
chr2	201205881	201205973	ENSG00000003400.14|CASP10|pc|chr2:201205881:201205973:+	0	+
#Deleted in new
chr2	201205881	201206250	ENSG00000003400.14|CASP10|pc|chr2:201205881:201206250:+	0	+
#Deleted in new
chr2	201208074	201208160	ENSG00000003400.14|CASP10|pc|chr2:201208074:201208160:+	0	+
#Deleted in new
chr2	201208074	201208183	ENSG00000003400.14|CASP10|pc|chr2:201208074:201208183:+	0	+
#Partially deleted in new
chr2	201217587	201220080	ENSG00000003400.14|CASP10|pc|chr2:201217587:201220080:+	0	+
#Partially deleted in new
chr2	201217587	201221660	ENSG00000003400.14|CASP10|pc|chr2:201217587:201221660:+	0	+
#Partially deleted in new
chr2	201217587	201221665	ENSG00000003400.14|CASP10|pc|chr2:201217587:201221665:+	0	+
#Deleted in new
chr2	201228932	201229128	ENSG00000003400.14|CASP10|pc|chr2:201228932:201229128:+	0	+
#Deleted in new
chr2	201228932	201229406	ENSG00000003400.14|CASP10|pc|chr2:201228932:201229406:+	0	+
#Deleted in new
chr2	201234015	201234112	ENSG00000064012.21|CASP8|pc|chr2:201234015:201234112:+	0	+
#Deleted in new
chr2	201240269	201242925	ENSG00000064012.21|CASP8|pc|chr2:201240269:201242925:+	0	+
#Deleted in new
chr2	201257979	201258032	ENSG00000064012.21|CASP8|pc|chr2:201257979:201258032:+	0	+
#Deleted in new
chr2	201258035	201258382	ENSG00000064012.21|CASP8|pc|chr2:201258035:201258382:+	0	+
#Deleted in new
chr2	201258090	201258154	ENSG00000064012.21|CASP8|pc|chr2:201258090:201258154:+	0	+
#Deleted in new
chr2	201258117	201258154	ENSG00000064012.21|CASP8|pc|chr2:201258117:201258154:+	0	+
#Deleted in new
chr2	201258117	201258382	ENSG00000064012.21|CASP8|pc|chr2:201258117:201258382:+	0	+
#Deleted in new
chr2	201258118	201258154	ENSG00000064012.21|CASP8|pc|chr2:201258118:201258154:+	0	+
#Deleted in new
chr2	201258323	201258382	ENSG00000064012.21|CASP8|pc|chr2:201258323:201258382:+	0	+
#Deleted in new
chr2	201269509	201269605	ENSG00000064012.21|CASP8|pc|chr2:201269509:201269605:+	0	+
#Deleted in new
chr2	201277726	201278161	ENSG00000064012.21|CASP8|pc|chr2:201277726:201278161:+	0	+
#Partially deleted in new
chr2	201286458	201287092	ENSG00000064012.21|CASP8|pc|chr2:201286458:201287092:+	0	+
#Partially deleted in new
chr2	201286458	201287709	ENSG00000064012.21|CASP8|pc|chr2:201286458:201287709:+	0	+
#Partially deleted in new
chr2	201286458	201287711	ENSG00000064012.21|CASP8|pc|chr2:201286458:201287711:+	0	+
#Partially deleted in new
chr2	201351818	201352082	ENSG00000155749.12|ALS2CR12|pc|chr2:201351818:201352082:-	0	-
#Deleted in new
chr2	201419196	201419448	ENSG00000115993.12|TRAK2|pc|chr2:201419196:201419448:-	0	-
#Deleted in new
chr2	201457378	201457450	ENSG00000082146.12|STRADB|pc|chr2:201457378:201457450:+	0	+
#Partially deleted in new
chr2	201479141	201479531	ENSG00000082146.12|STRADB|pc|chr2:201479141:201479531:+	0	+
#Deleted in new
chr2	201630954	201631375	ENSG00000155755.18|TMEM237|pc|chr2:201630954:201631375:-	0	-
#Deleted in new
chr2	201666596	201666721	ENSG00000082126.17|MPP4|pc|chr2:201666596:201666721:-	0	-
#Deleted in new
chr2	201673528	201673556	ENSG00000082126.17|MPP4|pc|chr2:201673528:201673556:-	0	-
#Deleted in new
chr2	201697931	201697996	ENSG00000082126.17|MPP4|pc|chr2:201697931:201697996:-	0	-
#Deleted in new
chr2	201697931	201698057	ENSG00000082126.17|MPP4|pc|chr2:201697931:201698057:-	0	-
#Deleted in new
chr2	201697931	201698068	ENSG00000082126.17|MPP4|pc|chr2:201697931:201698068:-	0	-
#Deleted in new
chr2	201716641	201716711	ENSG00000003393.14|ALS2|pc|chr2:201716641:201716711:-	0	-
#Deleted in new
chr2	201719985	201720128	ENSG00000003393.14|ALS2|pc|chr2:201719985:201720128:-	0	-
#Partially deleted in new
chr2	201721989	201723120	ENSG00000003393.14|ALS2|pc|chr2:201721989:201723120:-	0	-
#Deleted in new
chr2	201790460	201790660	ENSG00000138395.14|CDK15|pc|chr2:201790460:201790660:+	0	+
#Deleted in new
chr2	201790471	201790660	ENSG00000138395.14|CDK15|pc|chr2:201790471:201790660:+	0	+
#Deleted in new
chr2	201800783	201800901	ENSG00000138395.14|CDK15|pc|chr2:201800783:201800901:+	0	+
#Deleted in new
chr2	201876523	201876583	ENSG00000138395.14|CDK15|pc|chr2:201876523:201876583:+	0	+
#Deleted in new
chr2	202136022	202136099	ENSG00000182329.12|KIAA2012|pc|chr2:202136022:202136099:+	0	+
#Deleted in new
chr2	202207867	202208002	ENSG00000116030.16|SUMO1|pc|chr2:202207867:202208002:-	0	-
#Duplicated in new
chr2	202231542	202231732	ENSG00000116030.16|SUMO1|pc|chr2:202231542:202231732:-	0	-
#Partially deleted in new
chr2	20223202	20223278	ENSG00000115884.10|SDC1|pc|chr2:20223202:20223278:-	0	-
#Deleted in new
chr2	202233577	202233670	ENSG00000116030.16|SUMO1|pc|chr2:202233577:202233670:-	0	-
#Deleted in new
chr2	202291020	202291051	ENSG00000055044.10|NOP58|pc|chr2:202291020:202291051:+	0	+
#Partially deleted in new
chr2	202299857	202300137	ENSG00000055044.10|NOP58|pc|chr2:202299857:202300137:+	0	+
#Partially deleted in new
chr2	202336738	202337200	ENSG00000272966.1|AC064836.2|lncRNA|chr2:202336738:202337200:+	0	+
#Deleted in new
chr2	202467052	202467054	ENSG00000204217.13|BMPR2|pc|chr2:202467052:202467054:+	0	+
#Deleted in new
chr2	202474707	202475139	ENSG00000204217.13|BMPR2|pc|chr2:202474707:202475139:+	0	+
#Deleted in new
chr2	202786675	202786775	ENSG00000163596.16|ICA1L|pc|chr2:202786675:202786775:-	0	-
#Deleted in new
chr2	202796889	202796964	ENSG00000163596.16|ICA1L|pc|chr2:202796889:202796964:-	0	-
#Deleted in new
chr2	202844236	202844382	ENSG00000163596.16|ICA1L|pc|chr2:202844236:202844382:-	0	-
#Deleted in new
chr2	202844501	202844587	ENSG00000163596.16|ICA1L|pc|chr2:202844501:202844587:-	0	-
#Deleted in new
chr2	202860146	202860244	ENSG00000163596.16|ICA1L|pc|chr2:202860146:202860244:-	0	-
#Partially deleted in new
chr2	202869535	202869597	ENSG00000163596.16|ICA1L|pc|chr2:202869535:202869597:-	0	-
#Partially deleted in new
chr2	202869535	202869605	ENSG00000163596.16|ICA1L|pc|chr2:202869535:202869605:-	0	-
#Partially deleted in new
chr2	202874781	202880937	ENSG00000138442.9|WDR12|pc|chr2:202874781:202880937:-	0	-
#Deleted in new
chr2	202924296	202924415	ENSG00000138380.17|CARF|pc|chr2:202924296:202924415:+	0	+
#Deleted in new
chr2	202924356	202924415	ENSG00000138380.17|CARF|pc|chr2:202924356:202924415:+	0	+
#Deleted in new
chr2	202934501	202934599	ENSG00000138380.17|CARF|pc|chr2:202934501:202934599:+	0	+
#Deleted in new
chr2	202938273	202938395	ENSG00000138380.17|CARF|pc|chr2:202938273:202938395:+	0	+
#Partially deleted in new
chr2	202961236	202963168	ENSG00000138380.17|CARF|pc|chr2:202961236:202963168:+	0	+
#Deleted in new
chr2	203085271	203086212	ENSG00000144426.18|NBEAL1|pc|chr2:203085271:203086212:+	0	+
#Partially deleted in new
chr2	203296757	203298286	ENSG00000119004.15|CYP20A1|pc|chr2:203296757:203298286:+	0	+
#Deleted in new
chr2	203305448	203305611	ENSG00000119004.15|CYP20A1|pc|chr2:203305448:203305611:+	0	+
#Deleted in new
chr2	20331716	20331937	ENSG00000055917.15|PUM2|pc|chr2:20331716:20331937:-	0	-
#Deleted in new
chr2	20332966	20333063	ENSG00000055917.15|PUM2|pc|chr2:20332966:20333063:-	0	-
#Deleted in new
chr2	203351554	203351678	ENSG00000138443.15|ABI2|pc|chr2:203351554:203351678:+	0	+
#Deleted in new
chr2	203355153	203355324	ENSG00000138443.15|ABI2|pc|chr2:203355153:203355324:+	0	+
#Deleted in new
chr2	203374819	203374852	ENSG00000138443.15|ABI2|pc|chr2:203374819:203374852:+	0	+
#Deleted in new
chr2	203375931	203376132	ENSG00000138443.15|ABI2|pc|chr2:203375931:203376132:+	0	+
#Deleted in new
chr2	203376056	203376132	ENSG00000138443.15|ABI2|pc|chr2:203376056:203376132:+	0	+
#Deleted in new
chr2	204091342	204091449	ENSG00000234714.1|AC009965.1|lncRNA|chr2:204091342:204091449:+	0	+
#Deleted in new
chr2	20499570	20500110	ENSG00000227047.1|AC012065.1|lncRNA|chr2:20499570:20500110:-	0	-
#Deleted in new
chr2	20501165	20501311	ENSG00000227047.1|AC012065.1|lncRNA|chr2:20501165:20501311:-	0	-
#Deleted in new
chr2	205103691	205103769	ENSG00000116117.17|PARD3B|pc|chr2:205103691:205103769:+	0	+
#Deleted in new
chr2	20560447	20560515	ENSG00000118960.12|HS1BP3|pc|chr2:20560447:20560515:-	0	-
#Partially deleted in new
chr2	20590774	20591247	ENSG00000231948.2|HS1BP3-IT1|lncRNA|chr2:20590774:20591247:-	0	-
#Deleted in new
chr2	20592421	20592548	ENSG00000231948.2|HS1BP3-IT1|lncRNA|chr2:20592421:20592548:-	0	-
#Deleted in new
chr2	20592616	20592794	ENSG00000118960.12|HS1BP3|pc|chr2:20592616:20592794:-	0	-
#Deleted in new
chr2	20598207	20598265	ENSG00000118960.12|HS1BP3|pc|chr2:20598207:20598265:-	0	-
#Deleted in new
chr2	205989584	205989755	ENSG00000225610.1|AC007679.2|lncRNA|chr2:205989584:205989755:+	0	+
#Deleted in new
chr2	206063568	206063684	ENSG00000114933.15|INO80D|pc|chr2:206063568:206063684:-	0	-
#Split in new
chr2	206114816	206124276	ENSG00000023228.13|NDUFS1|pc|chr2:206114816:206124276:-	0	-
#Deleted in new
chr2	206122116	206122323	ENSG00000231955.1|AC007383.3|lncRNA|chr2:206122116:206122323:+	0	+
#Deleted in new
chr2	206203375	206203677	ENSG00000279220.1|GPR1-AS|lncRNA|chr2:206203375:206203677:+	0	+
#Deleted in new
chr2	206240442	206240588	ENSG00000279220.1|GPR1-AS|lncRNA|chr2:206240442:206240588:+	0	+
#Deleted in new
chr2	206255865	206255982	ENSG00000279220.1|GPR1-AS|lncRNA|chr2:206255865:206255982:+	0	+
#Deleted in new
chr2	206640072	206640178	ENSG00000231653.1|AC010731.3|lncRNA|chr2:206640072:206640178:+	0	+
#Partially deleted in new
chr2	206640822	206641282	ENSG00000231653.1|AC010731.3|lncRNA|chr2:206640822:206641282:+	0	+
#Deleted in new
chr2	206867826	206868289	ENSG00000229321.1|AC008269.1|lncRNA|chr2:206867826:206868289:+	0	+
#Deleted in new
chr2	207517619	207517698	ENSG00000223725.6|AC009226.1|lncRNA|chr2:207517619:207517698:-	0	-
#Deleted in new
chr2	207528516	207528613	ENSG00000223725.6|AC009226.1|lncRNA|chr2:207528516:207528613:-	0	-
#Partially deleted in new
chr2	207559121	207559255	ENSG00000118260.14|CREB1|pc|chr2:207559121:207559255:+	0	+
#Partially deleted in new
chr2	207559170	207559255	ENSG00000118260.14|CREB1|pc|chr2:207559170:207559255:+	0	+
#Deleted in new
chr2	207581352	207582160	ENSG00000144401.14|METTL21A|pc|chr2:207581352:207582160:-	0	-
#Deleted in new
chr2	207581694	207582160	ENSG00000144401.14|METTL21A|pc|chr2:207581694:207582160:-	0	-
#Deleted in new
chr2	207581793	207581946	ENSG00000144401.14|METTL21A|pc|chr2:207581793:207581946:-	0	-
#Deleted in new
chr2	207609113	207609765	ENSG00000144401.14|METTL21A|pc|chr2:207609113:207609765:-	0	-
#Partially deleted in new
chr2	207609114	207613443	ENSG00000144401.14|METTL21A|pc|chr2:207609114:207613443:-	0	-
#Deleted in new
chr2	207615672	207615691	ENSG00000144401.14|METTL21A|pc|chr2:207615672:207615691:-	0	-
#Deleted in new
chr2	207620640	207620694	ENSG00000144401.14|METTL21A|pc|chr2:207620640:207620694:-	0	-
#Deleted in new
chr2	207624841	207624983	ENSG00000144401.14|METTL21A|pc|chr2:207624841:207624983:-	0	-
#Deleted in new
chr2	207625061	207625121	ENSG00000144401.14|METTL21A|pc|chr2:207625061:207625121:-	0	-
#Deleted in new
chr2	207625061	207625249	ENSG00000144401.14|METTL21A|pc|chr2:207625061:207625249:-	0	-
#Deleted in new
chr2	207625061	207625262	ENSG00000144401.14|METTL21A|pc|chr2:207625061:207625262:-	0	-
#Deleted in new
chr2	207625061	207625331	ENSG00000144401.14|METTL21A|pc|chr2:207625061:207625331:-	0	-
#Deleted in new
chr2	207625264	207625378	ENSG00000144401.14|METTL21A|pc|chr2:207625264:207625378:-	0	-
#Deleted in new
chr2	207625264	207625379	ENSG00000144401.14|METTL21A|pc|chr2:207625264:207625379:-	0	-
#Deleted in new
chr2	207625676	207625927	ENSG00000144401.14|METTL21A|pc|chr2:207625676:207625927:-	0	-
#Deleted in new
chr2	207625676	207625928	ENSG00000144401.14|METTL21A|pc|chr2:207625676:207625928:-	0	-
#Deleted in new
chr2	207662374	207662522	ENSG00000224137.1|LINC01857|lncRNA|chr2:207662374:207662522:+	0	+
#Deleted in new
chr2	207666680	207667024	ENSG00000224137.1|LINC01857|lncRNA|chr2:207666680:207667024:+	0	+
#Deleted in new
chr2	207852782	207852835	ENSG00000178385.14|PLEKHM3|pc|chr2:207852782:207852835:-	0	-
#Deleted in new
chr2	20788888	20789340	ENSG00000118961.14|LDAH|pc|chr2:20788888:20789340:-	0	-
#Deleted in new
chr2	208168381	208168495	ENSG00000188674.10|C2orf80|pc|chr2:208168381:208168495:-	0	-
#Deleted in new
chr2	20823036	20823089	ENSG00000118961.14|LDAH|pc|chr2:20823036:20823089:-	0	-
#Deleted in new
chr2	20823036	20823101	ENSG00000118961.14|LDAH|pc|chr2:20823036:20823101:-	0	-
#Deleted in new
chr2	20823036	20823104	ENSG00000118961.14|LDAH|pc|chr2:20823036:20823104:-	0	-
#Deleted in new
chr2	20823036	20823110	ENSG00000118961.14|LDAH|pc|chr2:20823036:20823110:-	0	-
#Deleted in new
chr2	20823036	20823114	ENSG00000118961.14|LDAH|pc|chr2:20823036:20823114:-	0	-
#Deleted in new
chr2	20823036	20823122	ENSG00000118961.14|LDAH|pc|chr2:20823036:20823122:-	0	-
#Deleted in new
chr2	20823036	20823130	ENSG00000118961.14|LDAH|pc|chr2:20823036:20823130:-	0	-
#Partially deleted in new
chr2	208255399	208255622	ENSG00000231908.1|IDH1-AS1|lncRNA|chr2:208255399:208255622:+	0	+
#Deleted in new
chr2	208255528	208255589	ENSG00000138413.13|IDH1|pc|chr2:208255528:208255589:-	0	-
#Deleted in new
chr2	208255528	208255798	ENSG00000138413.13|IDH1|pc|chr2:208255528:208255798:-	0	-
#Deleted in new
chr2	208255902	208256168	ENSG00000231908.1|IDH1-AS1|lncRNA|chr2:208255902:208256168:+	0	+
#Deleted in new
chr2	208255902	208256181	ENSG00000231908.1|IDH1-AS1|lncRNA|chr2:208255902:208256181:+	0	+
#Split in new
chr2	208359713	208360237	ENSG00000144407.9|PTH2R|pc|chr2:208359713:208360237:+	0	+
#Deleted in new
chr2	208469849	208469952	ENSG00000231896.1|AC019185.2|lncRNA|chr2:208469849:208469952:+	0	+
#Deleted in new
chr2	208540108	208540413	ENSG00000231896.1|AC019185.2|lncRNA|chr2:208540108:208540413:+	0	+
#Deleted in new
chr2	208572012	208572167	ENSG00000144407.9|PTH2R|pc|chr2:208572012:208572167:+	0	+
#Deleted in new
chr2	208656825	208656989	ENSG00000144407.9|PTH2R|pc|chr2:208656825:208656989:+	0	+
#Partially deleted in new
chr2	208809451	208809565	ENSG00000144407.9|PTH2R|pc|chr2:208809451:208809565:+	0	+
#Deleted in new
chr2	208824194	208824350	ENSG00000144407.9|PTH2R|pc|chr2:208824194:208824350:+	0	+
#Deleted in new
chr2	208838362	208838411	ENSG00000144407.9|PTH2R|pc|chr2:208838362:208838411:+	0	+
#Deleted in new
chr2	208839985	208840094	ENSG00000144407.9|PTH2R|pc|chr2:208839985:208840094:+	0	+
#Deleted in new
chr2	208839985	208840100	ENSG00000144407.9|PTH2R|pc|chr2:208839985:208840100:+	0	+
#Deleted in new
chr2	208841680	208841783	ENSG00000144407.9|PTH2R|pc|chr2:208841680:208841783:+	0	+
#Deleted in new
chr2	208845133	208845226	ENSG00000144407.9|PTH2R|pc|chr2:208845133:208845226:+	0	+
#Deleted in new
chr2	208854299	208854503	ENSG00000144407.9|PTH2R|pc|chr2:208854299:208854503:+	0	+
#Deleted in new
chr2	209703986	209704034	ENSG00000078018.19|MAP2|pc|chr2:209703986:209704034:+	0	+
#Deleted in new
chr2	209704449	209704620	ENSG00000078018.19|MAP2|pc|chr2:209704449:209704620:+	0	+
#Deleted in new
chr2	209710663	209710812	ENSG00000078018.19|MAP2|pc|chr2:209710663:209710812:+	0	+
#Deleted in new
chr2	209794794	209796547	ENSG00000144406.18|UNC80|pc|chr2:209794794:209796547:+	0	+
#Deleted in new
chr2	209845104	209845234	ENSG00000144406.18|UNC80|pc|chr2:209845104:209845234:+	0	+
#Deleted in new
chr2	209951465	209951574	ENSG00000144406.18|UNC80|pc|chr2:209951465:209951574:+	0	+
#Deleted in new
chr2	20999312	21000917	ENSG00000261012.2|AC115619.1|lncRNA|chr2:20999312:21000917:-	0	-
#Deleted in new
chr2	210016203	210016257	ENSG00000197713.14|RPE|pc|chr2:210016203:210016257:+	0	+
#Deleted in new
chr2	210017789	210017816	ENSG00000197713.14|RPE|pc|chr2:210017789:210017816:+	0	+
#Deleted in new
chr2	210017789	210017887	ENSG00000197713.14|RPE|pc|chr2:210017789:210017887:+	0	+
#Deleted in new
chr2	210035155	210035244	ENSG00000229127.1|AC007038.1|lncRNA|chr2:210035155:210035244:+	0	+
#Deleted in new
chr2	210063783	210064356	ENSG00000229127.1|AC007038.1|lncRNA|chr2:210063783:210064356:+	0	+
#Deleted in new
chr2	210079804	210079898	ENSG00000144445.16|KANSL1L|pc|chr2:210079804:210079898:-	0	-
#Deleted in new
chr2	210080276	210080340	ENSG00000144445.16|KANSL1L|pc|chr2:210080276:210080340:-	0	-
#Deleted in new
chr2	210155193	210155302	ENSG00000144445.16|KANSL1L|pc|chr2:210155193:210155302:-	0	-
#Deleted in new
chr2	210218471	210218564	ENSG00000279317.2|AC006994.2|lncRNA|chr2:210218471:210218564:+	0	+
#Partially deleted in new
chr2	210225259	210225621	ENSG00000279317.2|AC006994.2|lncRNA|chr2:210225259:210225621:+	0	+
#Partially deleted in new
chr2	210230282	210233966	ENSG00000279317.2|AC006994.2|lncRNA|chr2:210230282:210233966:+	0	+
#Deleted in new
chr2	210232691	210233976	ENSG00000279317.2|AC006994.2|lncRNA|chr2:210232691:210233976:+	0	+
#Deleted in new
chr2	210427748	210427923	ENSG00000234281.5|LANCL1-AS1|lncRNA|chr2:210427748:210427923:+	0	+
#Partially deleted in new
chr2	210468681	210468694	ENSG00000234281.5|LANCL1-AS1|lncRNA|chr2:210468681:210468694:+	0	+
#Partially deleted in new
chr2	210477449	210477652	ENSG00000115365.11|LANCL1|pc|chr2:210477449:210477652:-	0	-
#Deleted in new
chr2	210519550	210519670	ENSG00000021826.14|CPS1|pc|chr2:210519550:210519670:+	0	+
#Deleted in new
chr2	210519550	210519784	ENSG00000021826.14|CPS1|pc|chr2:210519550:210519784:+	0	+
#Deleted in new
chr22	11066417	11066515	ENSG00000279973.2|CU104787.1|lncRNA|chr22:11066417:11066515:+	0	+
#Deleted in new
chr22	11067984	11068174	ENSG00000279973.2|CU104787.1|lncRNA|chr22:11067984:11068174:+	0	+
#Deleted in new
chr2	21123916	21124046	ENSG00000218819.4|TDRD15|pc|chr2:21123916:21124046:+	0	+
#Deleted in new
chr2	21127600	21127711	ENSG00000218819.4|TDRD15|pc|chr2:21127600:21127711:+	0	+
#Deleted in new
chr2	211960611	211960762	ENSG00000178568.14|ERBB4|pc|chr2:211960611:211960762:-	0	-
#Deleted in new
chr2	212429158	212429247	ENSG00000178568.14|ERBB4|pc|chr2:212429158:212429247:-	0	-
#Deleted in new
chr2	212581356	212581408	ENSG00000273118.1|AC093865.1|lncRNA|chr2:212581356:212581408:-	0	-
#Deleted in new
chr2	212795330	212795389	ENSG00000234308.2|LINC01878|lncRNA|chr2:212795330:212795389:+	0	+
#Deleted in new
chr2	212795339	212795389	ENSG00000234308.2|LINC01878|lncRNA|chr2:212795339:212795389:+	0	+
#Partially deleted in new
chr2	212817390	212817488	ENSG00000234308.2|LINC01878|lncRNA|chr2:212817390:212817488:+	0	+
#Partially deleted in new
chr2	212819160	212819264	ENSG00000234308.2|LINC01878|lncRNA|chr2:212819160:212819264:+	0	+
#Deleted in new
chr2	212896931	212897043	ENSG00000273118.1|AC093865.1|lncRNA|chr2:212896931:212897043:-	0	-
#Deleted in new
chr2	213016922	213017044	ENSG00000030419.16|IKZF2|pc|chr2:213016922:213017044:-	0	-
#Deleted in new
chr2	21317659	21317813	ENSG00000231204.5|AC011752.1|lncRNA|chr2:21317659:21317813:+	0	+
#Deleted in new
chr2	213266994	213267060	ENSG00000272519.1|AC079610.3|lncRNA|chr2:213266994:213267060:-	0	-
#Deleted in new
chr2	213276071	213276152	ENSG00000272519.1|AC079610.3|lncRNA|chr2:213276071:213276152:-	0	-
#Deleted in new
chr2	213276551	213277941	ENSG00000196096.3|AC079610.1|lncRNA|chr2:213276551:213277941:-	0	-
#Deleted in new
chr2	213278367	213278531	ENSG00000196096.3|AC079610.1|lncRNA|chr2:213278367:213278531:-	0	-
#Partially deleted in new
chr2	213297021	213297139	ENSG00000144451.18|SPAG16|pc|chr2:213297021:213297139:+	0	+
#Deleted in new
chr2	213302512	213302582	ENSG00000144451.18|SPAG16|pc|chr2:213302512:213302582:+	0	+
#Deleted in new
chr2	213422137	213422522	ENSG00000144451.18|SPAG16|pc|chr2:213422137:213422522:+	0	+
#Deleted in new
chr2	213923862	213924004	ENSG00000144451.18|SPAG16|pc|chr2:213923862:213924004:+	0	+
#Deleted in new
chr2	214250039	214250178	ENSG00000197585.9|AC068051.1|lncRNA|chr2:214250039:214250178:-	0	-
#Deleted in new
chr2	214311601	214311727	ENSG00000197585.9|AC068051.1|lncRNA|chr2:214311601:214311727:-	0	-
#Deleted in new
chr2	214472156	214472249	ENSG00000197585.9|AC068051.1|lncRNA|chr2:214472156:214472249:-	0	-
#Deleted in new
chr2	214683081	214683126	ENSG00000197585.9|AC068051.1|lncRNA|chr2:214683081:214683126:-	0	-
#Deleted in new
chr2	214684114	214684246	ENSG00000197585.9|AC068051.1|lncRNA|chr2:214684114:214684246:-	0	-
#Deleted in new
chr2	215013055	215013217	ENSG00000227769.7|AC072062.1|lncRNA|chr2:215013055:215013217:+	0	+
#Deleted in new
chr2	215013123	215013217	ENSG00000227769.7|AC072062.1|lncRNA|chr2:215013123:215013217:+	0	+
#Deleted in new
chr2	215013144	215013217	ENSG00000227769.7|AC072062.1|lncRNA|chr2:215013144:215013217:+	0	+
#Deleted in new
chr2	215013555	215013610	ENSG00000227769.7|AC072062.1|lncRNA|chr2:215013555:215013610:+	0	+
#Deleted in new
chr2	215017661	215017749	ENSG00000227769.7|AC072062.1|lncRNA|chr2:215017661:215017749:+	0	+
#Deleted in new
chr2	215020723	215020796	ENSG00000227769.7|AC072062.1|lncRNA|chr2:215020723:215020796:+	0	+
#Partially deleted in new
chr2	215025318	215025492	ENSG00000227769.7|AC072062.1|lncRNA|chr2:215025318:215025492:+	0	+
#Deleted in new
chr2	215042239	215042256	ENSG00000227769.7|AC072062.1|lncRNA|chr2:215042239:215042256:+	0	+
#Deleted in new
chr2	215042239	215042317	ENSG00000227769.7|AC072062.1|lncRNA|chr2:215042239:215042317:+	0	+
#Deleted in new
chr2	215042239	215042379	ENSG00000227769.7|AC072062.1|lncRNA|chr2:215042239:215042379:+	0	+
#Deleted in new
chr2	215044451	215044517	ENSG00000227769.7|AC072062.1|lncRNA|chr2:215044451:215044517:+	0	+
#Deleted in new
chr2	215277607	215277683	ENSG00000237571.1|AC073284.1|lncRNA|chr2:215277607:215277683:+	0	+
#Deleted in new
chr2	215277768	215277947	ENSG00000237571.1|AC073284.1|lncRNA|chr2:215277768:215277947:+	0	+
#Deleted in new
chr22	15282556	15288670	ENSG00000280341.1|AP000542.3|lncRNA|chr22:15282556:15288670:-	0	-
#Deleted in new
chr22	15298377	15304556	ENSG00000279442.1|AP000542.2|lncRNA|chr22:15298377:15304556:-	0	-
#Deleted in new
chr2	215347620	215347652	ENSG00000138363.14|ATIC|pc|chr2:215347620:215347652:+	0	+
#Deleted in new
chr2	215348683	215348731	ENSG00000138363.14|ATIC|pc|chr2:215348683:215348731:+	0	+
#Deleted in new
chr2	215456891	215456992	ENSG00000225166.1|AC012462.1|lncRNA|chr2:215456891:215456992:+	0	+
#Deleted in new
chr2	215463612	215463871	ENSG00000225166.1|AC012462.1|lncRNA|chr2:215463612:215463871:+	0	+
#Deleted in new
chr2	215530446	215530534	ENSG00000234938.2|AC012668.2|lncRNA|chr2:215530446:215530534:-	0	-
#Deleted in new
chr2	215533132	215533173	ENSG00000237525.6|AC012668.3|lncRNA|chr2:215533132:215533173:+	0	+
#Deleted in new
chr2	215545375	215545526	ENSG00000234938.2|AC012668.2|lncRNA|chr2:215545375:215545526:-	0	-
#Deleted in new
chr2	215546197	215546413	ENSG00000237525.6|AC012668.3|lncRNA|chr2:215546197:215546413:+	0	+
#Deleted in new
chr22	15560524	15560694	ENSG00000233408.1|AP000534.1|lncRNA|chr22:15560524:15560694:-	0	-
#Deleted in new
chr2	215582575	215582635	ENSG00000227981.2|AC012668.1|lncRNA|chr2:215582575:215582635:-	0	-
#Partially deleted in new
chr22	15600907	15602514	ENSG00000230471.1|AP000532.2|lncRNA|chr22:15600907:15602514:-	0	-
#Partially deleted in new
chr22	15604841	15604882	ENSG00000230471.1|AP000532.2|lncRNA|chr22:15604841:15604882:-	0	-
#Deleted in new
chr2	21561292	21561313	ENSG00000231204.5|AC011752.1|lncRNA|chr2:21561292:21561313:+	0	+
#Deleted in new
chr2	215615276	215615634	ENSG00000235770.5|LINC00607|lncRNA|chr2:215615276:215615634:-	0	-
#Deleted in new
chr2	215620107	215620397	ENSG00000235770.5|LINC00607|lncRNA|chr2:215620107:215620397:-	0	-
#Deleted in new
chr2	215665379	215665445	ENSG00000237525.6|AC012668.3|lncRNA|chr2:215665379:215665445:+	0	+
#Deleted in new
chr2	215689651	215689771	ENSG00000237525.6|AC012668.3|lncRNA|chr2:215689651:215689771:+	0	+
#Partially deleted in new
chr22	15690025	15690709	ENSG00000198062.14|POTEH|pc|chr22:15690025:15690709:+	0	+
#Deleted in new
chr22	15690077	15690314	ENSG00000198062.14|POTEH|pc|chr22:15690077:15690314:+	0	+
#Deleted in new
chr22	15697373	15697629	ENSG00000198062.14|POTEH|pc|chr22:15697373:15697629:+	0	+
#Deleted in new
chr22	15702959	15703403	ENSG00000236666.1|POTEH-AS1|lncRNA|chr22:15702959:15703403:-	0	-
#Duplicated in new
chr22	15710867	15711034	ENSG00000198062.14|POTEH|pc|chr22:15710867:15711034:+	0	+
#Duplicated in new
chr22	15721285	15721631	ENSG00000198062.14|POTEH|pc|chr22:15721285:15721631:+	0	+
#Deleted in new
chr22	15754387	15754453	ENSG00000225255.6|LINC01297|lncRNA|chr22:15754387:15754453:+	0	+
#Deleted in new
chr22	15765686	15765780	ENSG00000225255.6|LINC01297|lncRNA|chr22:15765686:15765780:+	0	+
#Deleted in new
chr22	15774711	15774848	ENSG00000225255.6|LINC01297|lncRNA|chr22:15774711:15774848:+	0	+
#Deleted in new
chr22	15778009	15778297	ENSG00000225255.6|LINC01297|lncRNA|chr22:15778009:15778297:+	0	+
#Deleted in new
chr22	15784958	15785057	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15784958:15785057:+	0	+
#Deleted in new
chr22	15784962	15785057	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15784962:15785057:+	0	+
#Deleted in new
chr22	15784967	15785057	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15784967:15785057:+	0	+
#Deleted in new
chr22	15784991	15785057	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15784991:15785057:+	0	+
#Deleted in new
chr22	15787171	15787282	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15787171:15787282:+	0	+
#Deleted in new
chr22	15788551	15788699	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15788551:15788699:+	0	+
#Deleted in new
chr22	15788584	15788699	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15788584:15788699:+	0	+
#Deleted in new
chr22	15788819	15788931	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15788819:15788931:+	0	+
#Deleted in new
chr22	15790660	15790798	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15790660:15790798:+	0	+
#Deleted in new
chr22	15790684	15790798	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15790684:15790798:+	0	+
#Deleted in new
chr22	15790708	15790798	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15790708:15790798:+	0	+
#Deleted in new
chr22	15791009	15791152	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15791009:15791152:+	0	+
#Deleted in new
chr22	15791016	15791152	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15791016:15791152:+	0	+
#Partially deleted in new
chr22	15791627	15791814	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15791627:15791814:+	0	+
#Deleted in new
chr22	15796958	15798346	ENSG00000271127.1|AP000526.1|lncRNA|chr22:15796958:15798346:+	0	+
#Deleted in new
chr2	215797359	215797591	ENSG00000235770.5|LINC00607|lncRNA|chr2:215797359:215797591:-	0	-
#Deleted in new
chr22	15815475	15815566	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15815475:15815566:+	0	+
#Deleted in new
chr22	15826141	15827434	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15826141:15827434:+	0	+
#Deleted in new
chr22	15826141	15827708	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15826141:15827708:+	0	+
#Deleted in new
chr22	15826141	15829984	ENSG00000206195.10|DUXAP8|lncRNA|chr22:15826141:15829984:+	0	+
#Deleted in new
chr22	15914720	15915146	ENSG00000233866.1|AC145543.1|lncRNA|chr22:15914720:15915146:-	0	-
#Deleted in new
chr22	15915640	15915800	ENSG00000233866.1|AC145543.1|lncRNA|chr22:15915640:15915800:-	0	-
#Deleted in new
chr2	216050791	216050897	ENSG00000115425.13|PECR|pc|chr2:216050791:216050897:-	0	-
#Deleted in new
chr2	216057708	216057947	ENSG00000115425.13|PECR|pc|chr2:216057708:216057947:-	0	-
#Deleted in new
chr2	216063888	216064146	ENSG00000115425.13|PECR|pc|chr2:216063888:216064146:-	0	-
#Deleted in new
chr2	216107463	216107532	ENSG00000079246.15|XRCC5|pc|chr2:216107463:216107532:+	0	+
#Partially deleted in new
chr2	216211403	216213519	ENSG00000279348.1|AC012513.3|lncRNA|chr2:216211403:216213519:+	0	+
#Partially deleted in new
chr2	216265520	216266130	ENSG00000231092.1|AC012513.1|lncRNA|chr2:216265520:216266130:+	0	+
#Deleted in new
chr2	216318077	216318148	ENSG00000233581.1|AC069155.1|lncRNA|chr2:216318077:216318148:+	0	+
#Deleted in new
chr2	216321568	216321737	ENSG00000233581.1|AC069155.1|lncRNA|chr2:216321568:216321737:+	0	+
#Deleted in new
chr2	21636042	21636144	ENSG00000235537.1|AC009411.2|lncRNA|chr2:21636042:21636144:-	0	-
#Deleted in new
chr2	21636268	21636309	ENSG00000235537.1|AC009411.2|lncRNA|chr2:21636268:21636309:-	0	-
#Deleted in new
chr2	216479029	216479259	ENSG00000232485.2|AC098820.1|lncRNA|chr2:216479029:216479259:-	0	-
#Deleted in new
chr2	216486770	216487380	ENSG00000232485.2|AC098820.1|lncRNA|chr2:216486770:216487380:-	0	-
#Deleted in new
chr2	216487125	216487196	ENSG00000241520.1|AC098820.3|lncRNA|chr2:216487125:216487196:-	0	-
#Deleted in new
chr2	216487803	216488243	ENSG00000232485.2|AC098820.1|lncRNA|chr2:216487803:216488243:-	0	-
#Deleted in new
chr2	216488116	216488243	ENSG00000232485.2|AC098820.1|lncRNA|chr2:216488116:216488243:-	0	-
#Deleted in new
chr2	216499831	216499866	ENSG00000197756.9|RPL37A|pc|chr2:216499831:216499866:+	0	+
#Partially deleted in new
chr2	216501340	216504086	ENSG00000197756.9|RPL37A|pc|chr2:216501340:216504086:+	0	+
#Deleted in new
chr22	16525946	16526113	ENSG00000273362.1|AP000547.2|lncRNA|chr22:16525946:16526113:+	0	+
#Deleted in new
chr22	16526974	16527237	ENSG00000273362.1|AP000547.2|lncRNA|chr22:16526974:16527237:+	0	+
#Partially deleted in new
chr2	216529024	216529583	ENSG00000197756.9|RPL37A|pc|chr2:216529024:216529583:+	0	+
#Deleted in new
chr2	216529269	216529451	ENSG00000197756.9|RPL37A|pc|chr2:216529269:216529451:+	0	+
#Deleted in new
chr2	216529269	216529454	ENSG00000197756.9|RPL37A|pc|chr2:216529269:216529454:+	0	+
#Deleted in new
chr2	216529269	216529484	ENSG00000197756.9|RPL37A|pc|chr2:216529269:216529484:+	0	+
#Deleted in new
chr2	216529269	216529587	ENSG00000197756.9|RPL37A|pc|chr2:216529269:216529587:+	0	+
#Deleted in new
chr2	216578920	216579180	ENSG00000197756.9|RPL37A|pc|chr2:216578920:216579180:+	0	+
#Deleted in new
chr2	216595183	216595243	ENSG00000224391.1|LINC01280|lncRNA|chr2:216595183:216595243:-	0	-
#Deleted in new
chr22	16611657	16611893	ENSG00000283633.1|AP000547.3|lncRNA|chr22:16611657:16611893:+	0	+
#Deleted in new
chr22	16612581	16615104	ENSG00000283633.1|AP000547.3|lncRNA|chr22:16612581:16615104:+	0	+
#Deleted in new
chr22	16613984	16614333	ENSG00000283633.1|AP000547.3|lncRNA|chr22:16613984:16614333:+	0	+
#Deleted in new
chr22	16614076	16614178	ENSG00000283633.1|AP000547.3|lncRNA|chr22:16614076:16614178:+	0	+
#Deleted in new
chr22	16614076	16615111	ENSG00000283633.1|AP000547.3|lncRNA|chr22:16614076:16615111:+	0	+
#Deleted in new
chr22	16614698	16615111	ENSG00000283633.1|AP000547.3|lncRNA|chr22:16614698:16615111:+	0	+
#Partially deleted in new
chr22	16616169	16616346	ENSG00000267338.1|AP000365.1|lncRNA|chr22:16616169:16616346:+	0	+
#Deleted in new
chr22	16616745	16617114	ENSG00000267338.1|AP000365.1|lncRNA|chr22:16616745:16617114:+	0	+
#Deleted in new
chr2	216659617	216659746	ENSG00000115457.9|IGFBP2|pc|chr2:216659617:216659746:+	0	+
#Deleted in new
chr22	16659857	16659969	ENSG00000189295.13|ANKRD62P1-PARP4P3|lncRNA|chr22:16659857:16659969:-	0	-
#Deleted in new
chr22	16661475	16661555	ENSG00000189295.13|ANKRD62P1-PARP4P3|lncRNA|chr22:16661475:16661555:-	0	-
#Deleted in new
chr22	16669461	16669620	ENSG00000189295.13|ANKRD62P1-PARP4P3|lncRNA|chr22:16669461:16669620:-	0	-
#Deleted in new
chr22	16669463	16669620	ENSG00000189295.13|ANKRD62P1-PARP4P3|lncRNA|chr22:16669463:16669620:-	0	-
#Deleted in new
chr22	16670216	16670261	ENSG00000189295.13|ANKRD62P1-PARP4P3|lncRNA|chr22:16670216:16670261:-	0	-
#Deleted in new
chr2	216712379	216712469	ENSG00000236886.2|AC007563.2|lncRNA|chr2:216712379:216712469:+	0	+
#Deleted in new
chr22	16748275	16748645	ENSG00000235343.1|LINC01665|lncRNA|chr22:16748275:16748645:-	0	-
#Deleted in new
chr22	16821606	16821699	ENSG00000172967.7|XKR3|pc|chr22:16821606:16821699:-	0	-
#Deleted in new
chr2	216854388	216854807	ENSG00000231597.1|AC007557.2|lncRNA|chr2:216854388:216854807:-	0	-
#Deleted in new
chr2	216854968	216855132	ENSG00000231597.1|AC007557.2|lncRNA|chr2:216854968:216855132:-	0	-
#Deleted in new
chr2	216867580	216867813	ENSG00000237479.1|AC007557.4|lncRNA|chr2:216867580:216867813:-	0	-
#Deleted in new
chr2	216868011	216868386	ENSG00000227021.1|AC007557.1|lncRNA|chr2:216868011:216868386:+	0	+
#Deleted in new
chr22	16869477	16869626	ENSG00000237689.1|AC007064.2|lncRNA|chr22:16869477:16869626:+	0	+
#Split in new
chr22	16950085	17034417	ENSG00000280156.1|AC006548.3|lncRNA|chr22:16950085:17034417:-	0	-
#Partially deleted in new
chr22	16966099	16967481	ENSG00000215568.7|GAB4|pc|chr22:16966099:16967481:-	0	-
#Deleted in new
chr22	16967300	16967445	ENSG00000215568.7|GAB4|pc|chr22:16967300:16967445:-	0	-
#Deleted in new
chr2	216981970	216982129	ENSG00000236886.2|AC007563.2|lncRNA|chr2:216981970:216982129:+	0	+
#Deleted in new
chr2	216995905	216996490	ENSG00000259855.1|AC007749.1|lncRNA|chr2:216995905:216996490:+	0	+
#Deleted in new
chr22	17067820	17070675	ENSG00000273203.1|AC006946.2|lncRNA|chr22:17067820:17070675:+	0	+
#Deleted in new
chr22	17080700	17081456	ENSG00000273442.1|AC006946.3|lncRNA|chr22:17080700:17081456:+	0	+
#Deleted in new
chr2	21710148	21710326	ENSG00000229621.1|LINC01822|lncRNA|chr2:21710148:21710326:-	0	-
#Deleted in new
chr2	21710594	21710623	ENSG00000229621.1|LINC01822|lncRNA|chr2:21710594:21710623:-	0	-
#Partially deleted in new
chr22	17121585	17122039	ENSG00000235478.4|LINC01664|lncRNA|chr22:17121585:17122039:+	0	+
#Partially deleted in new
chr22	17121594	17122039	ENSG00000235478.4|LINC01664|lncRNA|chr22:17121594:17122039:+	0	+
#Deleted in new
chr22	17122568	17122738	ENSG00000235478.4|LINC01664|lncRNA|chr22:17122568:17122738:+	0	+
#Deleted in new
chr22	17124654	17124771	ENSG00000235478.4|LINC01664|lncRNA|chr22:17124654:17124771:+	0	+
#Deleted in new
chr22	17130361	17130443	ENSG00000235478.4|LINC01664|lncRNA|chr22:17130361:17130443:+	0	+
#Deleted in new
chr22	17130361	17130484	ENSG00000235478.4|LINC01664|lncRNA|chr22:17130361:17130484:+	0	+
#Partially deleted in new
chr22	17158456	17158986	ENSG00000069998.12|HDHD5|pc|chr22:17158456:17158986:-	0	-
#Deleted in new
chr22	17165208	17165287	ENSG00000069998.12|HDHD5|pc|chr22:17165208:17165287:-	0	-
#Deleted in new
chr22	17165268	17165439	ENSG00000185837.3|HDHD5-AS1|lncRNA|chr22:17165268:17165439:+	0	+
#Deleted in new
chr22	17165268	17165445	ENSG00000185837.3|HDHD5-AS1|lncRNA|chr22:17165268:17165445:+	0	+
#Deleted in new
chr22	17178789	17181576	ENSG00000093072.15|ADA2|pc|chr22:17178789:17181576:-	0	-
#Deleted in new
chr22	17179303	17181576	ENSG00000093072.15|ADA2|pc|chr22:17179303:17181576:-	0	-
#Deleted in new
chr22	17179305	17181576	ENSG00000093072.15|ADA2|pc|chr22:17179305:17181576:-	0	-
#Deleted in new
chr22	17181819	17182022	ENSG00000093072.15|ADA2|pc|chr22:17181819:17182022:-	0	-
#Deleted in new
chr22	17182603	17182761	ENSG00000093072.15|ADA2|pc|chr22:17182603:17182761:-	0	-
#Deleted in new
chr22	17182640	17182761	ENSG00000093072.15|ADA2|pc|chr22:17182640:17182761:-	0	-
#Deleted in new
chr22	17188338	17188447	ENSG00000093072.15|ADA2|pc|chr22:17188338:17188447:-	0	-
#Deleted in new
chr22	17188338	17188727	ENSG00000093072.15|ADA2|pc|chr22:17188338:17188727:-	0	-
#Deleted in new
chr22	17189783	17190032	ENSG00000093072.15|ADA2|pc|chr22:17189783:17190032:-	0	-
#Deleted in new
chr22	17189941	17190032	ENSG00000093072.15|ADA2|pc|chr22:17189941:17190032:-	0	-
#Deleted in new
chr22	17191682	17191810	ENSG00000093072.15|ADA2|pc|chr22:17191682:17191810:-	0	-
#Deleted in new
chr22	17199548	17199783	ENSG00000093072.15|ADA2|pc|chr22:17199548:17199783:-	0	-
#Deleted in new
chr22	17203562	17203773	ENSG00000093072.15|ADA2|pc|chr22:17203562:17203773:-	0	-
#Deleted in new
chr22	17207070	17207290	ENSG00000093072.15|ADA2|pc|chr22:17207070:17207290:-	0	-
#Deleted in new
chr22	17207156	17207290	ENSG00000093072.15|ADA2|pc|chr22:17207156:17207290:-	0	-
#Deleted in new
chr22	17207205	17207290	ENSG00000093072.15|ADA2|pc|chr22:17207205:17207290:-	0	-
#Deleted in new
chr22	17209355	17209598	ENSG00000093072.15|ADA2|pc|chr22:17209355:17209598:-	0	-
#Deleted in new
chr22	17209355	17209685	ENSG00000093072.15|ADA2|pc|chr22:17209355:17209685:-	0	-
#Deleted in new
chr22	17209355	17209690	ENSG00000093072.15|ADA2|pc|chr22:17209355:17209690:-	0	-
#Deleted in new
chr22	17209355	17209723	ENSG00000093072.15|ADA2|pc|chr22:17209355:17209723:-	0	-
#Deleted in new
chr22	17209355	17209889	ENSG00000093072.15|ADA2|pc|chr22:17209355:17209889:-	0	-
#Deleted in new
chr22	17219355	17219435	ENSG00000093072.15|ADA2|pc|chr22:17219355:17219435:-	0	-
#Deleted in new
chr22	17219355	17219585	ENSG00000093072.15|ADA2|pc|chr22:17219355:17219585:-	0	-
#Deleted in new
chr22	17221726	17221854	ENSG00000093072.15|ADA2|pc|chr22:17221726:17221854:-	0	-
#Deleted in new
chr22	17221726	17221989	ENSG00000093072.15|ADA2|pc|chr22:17221726:17221989:-	0	-
#Deleted in new
chr22	17260789	17261045	ENSG00000241832.1|CECR3|lncRNA|chr22:17260789:17261045:-	0	-
#Deleted in new
chr2	2172871	2172988	ENSG00000186487.17|MYT1L|pc|chr2:2172871:2172988:-	0	-
#Deleted in new
chr2	217295903	217295987	ENSG00000233143.1|DIRC3-AS1|lncRNA|chr2:217295903:217295987:+	0	+
#Deleted in new
chr2	217296631	217296770	ENSG00000233143.1|DIRC3-AS1|lncRNA|chr2:217296631:217296770:+	0	+
#Deleted in new
chr2	217325845	217325970	ENSG00000231672.6|DIRC3|pc|chr2:217325845:217325970:-	0	-
#Deleted in new
chr22	17359948	17360023	ENSG00000099954.18|CECR2|pc|chr22:17359948:17360023:+	0	+
#Deleted in new
chr22	17428272	17428540	ENSG00000099954.18|CECR2|pc|chr22:17428272:17428540:+	0	+
#Deleted in new
chr22	17534743	17534747	ENSG00000099954.18|CECR2|pc|chr22:17534743:17534747:+	0	+
#Deleted in new
chr22	17569706	17569796	ENSG00000182902.13|SLC25A18|pc|chr22:17569706:17569796:+	0	+
#Partially deleted in new
chr22	17581357	17582208	ENSG00000182902.13|SLC25A18|pc|chr22:17581357:17582208:+	0	+
#Deleted in new
chr22	17582250	17582372	ENSG00000236754.5|AC007666.1|lncRNA|chr22:17582250:17582372:-	0	-
#Deleted in new
chr22	17585264	17585386	ENSG00000236754.5|AC007666.1|lncRNA|chr22:17585264:17585386:-	0	-
#Partially deleted in new
chr22	17587866	17589192	ENSG00000236754.5|AC007666.1|lncRNA|chr22:17587866:17589192:-	0	-
#Partially deleted in new
chr22	17594528	17595292	ENSG00000131100.12|ATP6V1E1|pc|chr22:17594528:17595292:-	0	-
#Deleted in new
chr22	17619033	17619127	ENSG00000131100.12|ATP6V1E1|pc|chr22:17619033:17619127:-	0	-
#Partially deleted in new
chr22	17628915	17629005	ENSG00000099968.17|BCL2L13|pc|chr22:17628915:17629005:+	0	+
#Partially deleted in new
chr22	17702242	17703733	ENSG00000099968.17|BCL2L13|pc|chr22:17702242:17703733:+	0	+
#Deleted in new
chr2	217729	218108	ENSG00000035115.21|SH3YL1|pc|chr2:217729:218108:-	0	-
#Partially deleted in new
chr22	17739348	17740176	ENSG00000015475.18|BID|pc|chr22:17739348:17740176:-	0	-
#Partially deleted in new
chr22	17739348	17741194	ENSG00000015475.18|BID|pc|chr22:17739348:17741194:-	0	-
#Deleted in new
chr22	17740030	17740176	ENSG00000015475.18|BID|pc|chr22:17740030:17740176:-	0	-
#Deleted in new
chr22	17740081	17740176	ENSG00000015475.18|BID|pc|chr22:17740081:17740176:-	0	-
#Deleted in new
chr22	17750104	17750174	ENSG00000015475.18|BID|pc|chr22:17750104:17750174:-	0	-
#Deleted in new
chr22	17774639	17774665	ENSG00000015475.18|BID|pc|chr22:17774639:17774665:-	0	-
#Deleted in new
chr22	17774692	17774770	ENSG00000015475.18|BID|pc|chr22:17774692:17774770:-	0	-
#Deleted in new
chr22	17777321	17779481	ENSG00000269220.1|LINC00528|lncRNA|chr22:17777321:17779481:+	0	+
#Deleted in new
chr22	17834327	17834549	ENSG00000243156.7|MICAL3|pc|chr22:17834327:17834549:-	0	-
#Partially deleted in new
chr22	17839591	17842017	ENSG00000243156.7|MICAL3|pc|chr22:17839591:17842017:-	0	-
#Partially deleted in new
chr22	17839950	17842482	ENSG00000243156.7|MICAL3|pc|chr22:17839950:17842482:-	0	-
#Deleted in new
chr22	17983204	17983287	ENSG00000235445.1|AC016027.3|lncRNA|chr22:17983204:17983287:-	0	-
#Deleted in new
chr22	17983341	17983619	ENSG00000235445.1|AC016027.3|lncRNA|chr22:17983341:17983619:-	0	-
#Deleted in new
chr2	217985463	217985581	ENSG00000223923.1|AC010136.1|lncRNA|chr2:217985463:217985581:+	0	+
#Deleted in new
chr2	217986739	217987044	ENSG00000079308.16|TNS1|pc|chr2:217986739:217987044:-	0	-
#Deleted in new
chr2	217986834	217986933	ENSG00000223923.1|AC010136.1|lncRNA|chr2:217986834:217986933:+	0	+
#Partially deleted in new
chr22	18004269	18006615	ENSG00000234913.1|AC016027.2|lncRNA|chr22:18004269:18006615:-	0	-
#Deleted in new
chr22	18007161	18007308	ENSG00000234913.1|AC016027.2|lncRNA|chr22:18007161:18007308:-	0	-
#Deleted in new
chr22	18029384	18029554	ENSG00000235295.1|LINC01634|lncRNA|chr22:18029384:18029554:+	0	+
#Deleted in new
chr2	218058594	218058681	ENSG00000188282.12|RUFY4|pc|chr2:218058594:218058681:+	0	+
#Split in new
chr22	18087971	18105396	ENSG00000215193.12|PEX26|pc|chr22:18087971:18105396:+	0	+
#Deleted in new
chr2	218125288	218125359	ENSG00000180871.7|CXCR2|pc|chr2:218125288:218125359:+	0	+
#Deleted in new
chr22	18145655	18146554	ENSG00000183785.14|TUBA8|pc|chr22:18145655:18146554:+	0	+
#Partially deleted in new
chr22	18149898	18150222	ENSG00000184979.9|USP18|pc|chr22:18149898:18150222:+	0	+
#Partially deleted in new
chr22	18176771	18177397	ENSG00000184979.9|USP18|pc|chr22:18176771:18177397:+	0	+
#Deleted in new
chr22	18178037	18178465	ENSG00000187979.4|AC008079.1|lncRNA|chr22:18178037:18178465:-	0	-
#Partially deleted in new
chr22	18183109	18184066	ENSG00000187979.4|AC008079.1|lncRNA|chr22:18183109:18184066:-	0	-
#Deleted in new
chr22	18188622	18188656	ENSG00000187979.4|AC008079.1|lncRNA|chr22:18188622:18188656:-	0	-
#Deleted in new
chr22	18189121	18189183	ENSG00000187979.4|AC008079.1|lncRNA|chr22:18189121:18189183:-	0	-
#Deleted in new
chr22	18191182	18191248	ENSG00000187979.4|AC008079.1|lncRNA|chr22:18191182:18191248:-	0	-
#Deleted in new
chr22	18196156	18196243	ENSG00000187979.4|AC008079.1|lncRNA|chr22:18196156:18196243:-	0	-
#Deleted in new
chr22	18199189	18199214	ENSG00000187979.4|AC008079.1|lncRNA|chr22:18199189:18199214:-	0	-
#Deleted in new
chr22	18199682	18199741	ENSG00000187979.4|AC008079.1|lncRNA|chr22:18199682:18199741:-	0	-
#Deleted in new
chr22	18205774	18205915	ENSG00000187979.4|AC008079.1|lncRNA|chr22:18205774:18205915:-	0	-
#Deleted in new
chr2	218226995	218227097	ENSG00000163466.15|ARPC2|pc|chr2:218226995:218227097:+	0	+
#Partially deleted in new
chr2	218232999	218234397	ENSG00000163466.15|ARPC2|pc|chr2:218232999:218234397:+	0	+
#Deleted in new
chr2	218234848	218235044	ENSG00000163466.15|ARPC2|pc|chr2:218234848:218235044:+	0	+
#Deleted in new
chr2	218235195	218235390	ENSG00000163466.15|ARPC2|pc|chr2:218235195:218235390:+	0	+
#Partially deleted in new
chr2	218235340	218236733	ENSG00000163466.15|ARPC2|pc|chr2:218235340:218236733:+	0	+
#Partially deleted in new
chr2	218236368	218236733	ENSG00000163466.15|ARPC2|pc|chr2:218236368:218236733:+	0	+
#Partially deleted in new
chr2	218252944	218253032	ENSG00000163466.15|ARPC2|pc|chr2:218252944:218253032:+	0	+
#Deleted in new
chr2	218255318	218257366	ENSG00000261338.2|AC021016.2|lncRNA|chr2:218255318:218257366:+	0	+
#Deleted in new
chr2	218284038	218284136	ENSG00000135926.14|TMBIM1|pc|chr2:218284038:218284136:-	0	-
#Deleted in new
chr2	218284038	218284160	ENSG00000135926.14|TMBIM1|pc|chr2:218284038:218284160:-	0	-
#Deleted in new
chr2	218289965	218289994	ENSG00000135926.14|TMBIM1|pc|chr2:218289965:218289994:-	0	-
#Deleted in new
chr2	218289965	218290089	ENSG00000135926.14|TMBIM1|pc|chr2:218289965:218290089:-	0	-
#Deleted in new
chr2	218316727	218316883	ENSG00000127838.13|PNKD|pc|chr2:218316727:218316883:+	0	+
#Partially deleted in new
chr2	218326888	218327147	ENSG00000237281.1|CATIP-AS2|lncRNA|chr2:218326888:218327147:-	0	-
#Deleted in new
chr2	218327803	218327959	ENSG00000237281.1|CATIP-AS2|lncRNA|chr2:218327803:218327959:-	0	-
#Deleted in new
chr2	218334702	218334758	ENSG00000127838.13|PNKD|pc|chr2:218334702:218334758:+	0	+
#Deleted in new
chr2	218351159	218351226	ENSG00000237281.1|CATIP-AS2|lncRNA|chr2:218351159:218351226:-	0	-
#Deleted in new
chr22	18361822	18362257	ENSG00000274044.4|LINC01660|lncRNA|chr22:18361822:18362257:-	0	-
#Deleted in new
chr22	18361829	18362257	ENSG00000274044.4|LINC01660|lncRNA|chr22:18361829:18362257:-	0	-
#Partially deleted in new
chr22	18366900	18367055	ENSG00000274044.4|LINC01660|lncRNA|chr22:18366900:18367055:-	0	-
#Partially deleted in new
chr22	18366900	18367857	ENSG00000274044.4|LINC01660|lncRNA|chr22:18366900:18367857:-	0	-
#Deleted in new
chr22	18367517	18367558	ENSG00000274044.4|LINC01660|lncRNA|chr22:18367517:18367558:-	0	-
#Deleted in new
chr22	18367784	18367857	ENSG00000274044.4|LINC01660|lncRNA|chr22:18367784:18367857:-	0	-
#Deleted in new
chr22	18370665	18370713	ENSG00000274044.4|LINC01660|lncRNA|chr22:18370665:18370713:-	0	-
#Deleted in new
chr22	18372922	18372956	ENSG00000274044.4|LINC01660|lncRNA|chr22:18372922:18372956:-	0	-
#Deleted in new
chr22	18373421	18373483	ENSG00000274044.4|LINC01660|lncRNA|chr22:18373421:18373483:-	0	-
#Deleted in new
chr22	18374105	18374221	ENSG00000276874.1|AC011718.1|lncRNA|chr22:18374105:18374221:+	0	+
#Deleted in new
chr22	18375430	18375689	ENSG00000276874.1|AC011718.1|lncRNA|chr22:18375430:18375689:+	0	+
#Deleted in new
chr22	18375483	18375549	ENSG00000274044.4|LINC01660|lncRNA|chr22:18375483:18375549:-	0	-
#Deleted in new
chr22	18380455	18380542	ENSG00000274044.4|LINC01660|lncRNA|chr22:18380455:18380542:-	0	-
#Deleted in new
chr22	18383486	18383511	ENSG00000274044.4|LINC01660|lncRNA|chr22:18383486:18383511:-	0	-
#Deleted in new
chr22	18383979	18384038	ENSG00000274044.4|LINC01660|lncRNA|chr22:18383979:18384038:-	0	-
#Deleted in new
chr2	218384906	218385001	ENSG00000018280.16|SLC11A1|pc|chr2:218384906:218385001:+	0	+
#Deleted in new
chr2	218385411	218385485	ENSG00000018280.16|SLC11A1|pc|chr2:218385411:218385485:+	0	+
#Deleted in new
chr2	218385411	218385574	ENSG00000018280.16|SLC11A1|pc|chr2:218385411:218385574:+	0	+
#Deleted in new
chr22	18386385	18386480	ENSG00000274044.4|LINC01660|lncRNA|chr22:18386385:18386480:-	0	-
#Deleted in new
chr22	18386385	18386526	ENSG00000274044.4|LINC01660|lncRNA|chr22:18386385:18386526:-	0	-
#Deleted in new
chr22	18386385	18386597	ENSG00000274044.4|LINC01660|lncRNA|chr22:18386385:18386597:-	0	-
#Deleted in new
chr22	18390818	18391105	ENSG00000274044.4|LINC01660|lncRNA|chr22:18390818:18391105:-	0	-
#Deleted in new
chr2	218392114	218392635	ENSG00000018280.16|SLC11A1|pc|chr2:218392114:218392635:+	0	+
#Deleted in new
chr2	218392114	218392692	ENSG00000018280.16|SLC11A1|pc|chr2:218392114:218392692:+	0	+
#Partially deleted in new
chr2	218394924	218395323	ENSG00000018280.16|SLC11A1|pc|chr2:218394924:218395323:+	0	+
#Partially deleted in new
chr2	218394924	218396027	ENSG00000018280.16|SLC11A1|pc|chr2:218394924:218396027:+	0	+
#Deleted in new
chr2	218398255	218398332	ENSG00000144579.7|CTDSP1|pc|chr2:218398255:218398332:+	0	+
#Deleted in new
chr2	218398337	218398479	ENSG00000144579.7|CTDSP1|pc|chr2:218398337:218398479:+	0	+
#Partially deleted in new
chr2	218399376	218399474	ENSG00000144579.7|CTDSP1|pc|chr2:218399376:218399474:+	0	+
#Deleted in new
chr22	18422243	18422347	ENSG00000277870.5|FAM230A|pc|chr22:18422243:18422347:+	0	+
#Deleted in new
chr22	18424976	18425035	ENSG00000277870.5|FAM230A|pc|chr22:18424976:18425035:+	0	+
#Deleted in new
chr22	18425503	18425528	ENSG00000277870.5|FAM230A|pc|chr22:18425503:18425528:+	0	+
#Deleted in new
chr22	18428474	18428561	ENSG00000277870.5|FAM230A|pc|chr22:18428474:18428561:+	0	+
#Deleted in new
chr2	218473189	218473246	ENSG00000135913.10|USP37|pc|chr2:218473189:218473246:-	0	-
#Deleted in new
chr22	18486998	18487257	ENSG00000277017.1|AC023490.1|lncRNA|chr22:18486998:18487257:-	0	-
#Deleted in new
chr22	18487125	18487204	ENSG00000277870.5|FAM230A|pc|chr22:18487125:18487204:+	0	+
#Deleted in new
chr22	18487138	18487204	ENSG00000277870.5|FAM230A|pc|chr22:18487138:18487204:+	0	+
#Deleted in new
chr22	18487868	18488583	ENSG00000277017.1|AC023490.1|lncRNA|chr22:18487868:18488583:-	0	-
#Deleted in new
chr22	18488466	18488582	ENSG00000277017.1|AC023490.1|lncRNA|chr22:18488466:18488582:-	0	-
#Deleted in new
chr22	18489204	18489266	ENSG00000277870.5|FAM230A|pc|chr22:18489204:18489266:+	0	+
#Deleted in new
chr22	18489731	18489765	ENSG00000277870.5|FAM230A|pc|chr22:18489731:18489765:+	0	+
#Deleted in new
chr22	18489731	18489905	ENSG00000277870.5|FAM230A|pc|chr22:18489731:18489905:+	0	+
#Deleted in new
chr22	18489731	18490146	ENSG00000277870.5|FAM230A|pc|chr22:18489731:18490146:+	0	+
#Deleted in new
chr22	18491142	18491247	ENSG00000277017.1|AC023490.1|lncRNA|chr22:18491142:18491247:-	0	-
#Deleted in new
chr22	18494559	18494632	ENSG00000277870.5|FAM230A|pc|chr22:18494559:18494632:+	0	+
#Deleted in new
chr22	18494858	18494899	ENSG00000277870.5|FAM230A|pc|chr22:18494858:18494899:+	0	+
#Partially deleted in new
chr22	18495361	18495516	ENSG00000277870.5|FAM230A|pc|chr22:18495361:18495516:+	0	+
#Deleted in new
chr22	18500155	18500594	ENSG00000277870.5|FAM230A|pc|chr22:18500155:18500594:+	0	+
#Deleted in new
chr2	218514259	218514428	ENSG00000135913.10|USP37|pc|chr2:218514259:218514428:-	0	-
#Deleted in new
chr2	218528270	218528800	ENSG00000135913.10|USP37|pc|chr2:218528270:218528800:-	0	-
#Deleted in new
chr2	218573720	218573791	ENSG00000144580.13|CNOT9|pc|chr2:218573720:218573791:+	0	+
#Deleted in new
chr2	218573990	218574159	ENSG00000144580.13|CNOT9|pc|chr2:218573990:218574159:+	0	+
#Deleted in new
chr2	218573994	218574233	ENSG00000144580.13|CNOT9|pc|chr2:218573994:218574233:+	0	+
#Deleted in new
chr2	218580994	218581114	ENSG00000144580.13|CNOT9|pc|chr2:218580994:218581114:+	0	+
#Partially deleted in new
chr2	218587304	218587400	ENSG00000144580.13|CNOT9|pc|chr2:218587304:218587400:+	0	+
#Partially deleted in new
chr2	218593527	218593842	ENSG00000144580.13|CNOT9|pc|chr2:218593527:218593842:+	0	+
#Partially deleted in new
chr2	218660036	218660166	ENSG00000074582.12|BCS1L|pc|chr2:218660036:218660166:+	0	+
#Partially deleted in new
chr2	218660036	218660218	ENSG00000074582.12|BCS1L|pc|chr2:218660036:218660218:+	0	+
#Partially deleted in new
chr2	218660036	218660245	ENSG00000074582.12|BCS1L|pc|chr2:218660036:218660245:+	0	+
#Deleted in new
chr2	218727268	218727347	ENSG00000135912.10|TTLL4|pc|chr2:218727268:218727347:+	0	+
#Deleted in new
chr2	218728024	218728067	ENSG00000135912.10|TTLL4|pc|chr2:218728024:218728067:+	0	+
#Deleted in new
chr22	18733913	18734054	ENSG00000182824.7|LINC01662|lncRNA|chr22:18733913:18734054:+	0	+
#Deleted in new
chr22	18736031	18736090	ENSG00000182824.7|LINC01662|lncRNA|chr22:18736031:18736090:+	0	+
#Deleted in new
chr22	18736558	18736583	ENSG00000182824.7|LINC01662|lncRNA|chr22:18736558:18736583:+	0	+
#Deleted in new
chr22	18739529	18739616	ENSG00000182824.7|LINC01662|lncRNA|chr22:18739529:18739616:+	0	+
#Deleted in new
chr22	18744509	18744575	ENSG00000182824.7|LINC01662|lncRNA|chr22:18744509:18744575:+	0	+
#Deleted in new
chr22	18746573	18746635	ENSG00000182824.7|LINC01662|lncRNA|chr22:18746573:18746635:+	0	+
#Deleted in new
chr22	18747100	18747134	ENSG00000182824.7|LINC01662|lncRNA|chr22:18747100:18747134:+	0	+
#Partially deleted in new
chr22	18751868	18752825	ENSG00000182824.7|LINC01662|lncRNA|chr22:18751868:18752825:+	0	+
#Deleted in new
chr22	18756347	18757906	ENSG00000182824.7|LINC01662|lncRNA|chr22:18756347:18757906:+	0	+
#Deleted in new
chr22	18757466	18757894	ENSG00000182824.7|LINC01662|lncRNA|chr22:18757466:18757894:+	0	+
#Deleted in new
chr2	218818689	218819144	ENSG00000272555.1|AC009974.1|lncRNA|chr2:218818689:218819144:+	0	+
#Partially deleted in new
chr22	18873542	18873665	ENSG00000276095.2|LINC01663|lncRNA|chr22:18873542:18873665:-	0	-
#Deleted in new
chr22	18875878	18875912	ENSG00000276095.2|LINC01663|lncRNA|chr22:18875878:18875912:-	0	-
#Deleted in new
chr22	18876377	18876439	ENSG00000276095.2|LINC01663|lncRNA|chr22:18876377:18876439:-	0	-
#Deleted in new
chr22	18878438	18878504	ENSG00000276095.2|LINC01663|lncRNA|chr22:18878438:18878504:-	0	-
#Deleted in new
chr22	18883412	18883499	ENSG00000276095.2|LINC01663|lncRNA|chr22:18883412:18883499:-	0	-
#Deleted in new
chr22	18883501	18884682	ENSG00000279987.1|AC008103.1|lncRNA|chr22:18883501:18884682:-	0	-
#Deleted in new
chr22	18886445	18886470	ENSG00000276095.2|LINC01663|lncRNA|chr22:18886445:18886470:-	0	-
#Deleted in new
chr22	18886938	18886997	ENSG00000276095.2|LINC01663|lncRNA|chr22:18886938:18886997:-	0	-
#Deleted in new
chr22	18894328	18894407	ENSG00000276095.2|LINC01663|lncRNA|chr22:18894328:18894407:-	0	-
#Deleted in new
chr2	218899190	218899581	ENSG00000135925.8|WNT10A|pc|chr2:218899190:218899581:+	0	+
#Deleted in new
chr22	18906027	18906114	ENSG00000183628.12|DGCR6|pc|chr22:18906027:18906114:+	0	+
#Partially deleted in new
chr22	18906564	18908269	ENSG00000183628.12|DGCR6|pc|chr22:18906564:18908269:+	0	+
#Deleted in new
chr22	18906780	18907086	ENSG00000183628.12|DGCR6|pc|chr22:18906780:18907086:+	0	+
#Deleted in new
chr2	218906838	218907046	ENSG00000228135.1|LINC01494|lncRNA|chr2:218906838:218907046:-	0	-
#Deleted in new
chr22	18909979	18910098	ENSG00000183628.12|DGCR6|pc|chr22:18909979:18910098:+	0	+
#Partially deleted in new
chr22	18914529	18916988	ENSG00000100033.16|PRODH|pc|chr22:18914529:18916988:-	0	-
#Deleted in new
chr2	218921689	218921760	ENSG00000228135.1|LINC01494|lncRNA|chr2:218921689:218921760:-	0	-
#Deleted in new
chr2	218930357	218930636	ENSG00000228135.1|LINC01494|lncRNA|chr2:218930357:218930636:-	0	-
#Partially deleted in new
chr22	18936389	18936451	ENSG00000100033.16|PRODH|pc|chr22:18936389:18936451:-	0	-
#Partially deleted in new
chr22	18936389	18936553	ENSG00000100033.16|PRODH|pc|chr22:18936389:18936553:-	0	-
#Deleted in new
chr22	18936410	18936648	ENSG00000284294.1|AC007326.5|lncRNA|chr22:18936410:18936648:+	0	+
#Deleted in new
chr22	18937351	18937467	ENSG00000284294.1|AC007326.5|lncRNA|chr22:18937351:18937467:+	0	+
#Deleted in new
chr22	18939445	18939757	ENSG00000284294.1|AC007326.5|lncRNA|chr22:18939445:18939757:+	0	+
#Deleted in new
chr22	18939672	18939749	ENSG00000283809.1|AC007326.4|pc|chr22:18939672:18939749:+	0	+
#Deleted in new
chr22	18939672	18939749	ENSG00000284294.1|AC007326.5|lncRNA|chr22:18939672:18939749:+	0	+
#Deleted in new
chr2	218944628	218945136	ENSG00000235024.1|AC097468.2|lncRNA|chr2:218944628:218945136:-	0	-
#Deleted in new
chr22	18945122	18945169	ENSG00000284294.1|AC007326.5|lncRNA|chr22:18945122:18945169:+	0	+
#Deleted in new
chr22	18946790	18946971	ENSG00000284294.1|AC007326.5|lncRNA|chr22:18946790:18946971:+	0	+
#Deleted in new
chr22	18946790	18947692	ENSG00000284294.1|AC007326.5|lncRNA|chr22:18946790:18947692:+	0	+
#Deleted in new
chr22	18946790	18947732	ENSG00000283809.1|AC007326.4|pc|chr22:18946790:18947732:+	0	+
#Deleted in new
chr22	18946790	18947741	ENSG00000284294.1|AC007326.5|lncRNA|chr22:18946790:18947741:+	0	+
#Partially deleted in new
chr2	218977481	218979660	ENSG00000236445.4|LINC00608|lncRNA|chr2:218977481:218979660:+	0	+
#Deleted in new
chr2	218979264	218979609	ENSG00000236445.4|LINC00608|lncRNA|chr2:218979264:218979609:+	0	+
#Deleted in new
chr2	218979264	218979620	ENSG00000236445.4|LINC00608|lncRNA|chr2:218979264:218979620:+	0	+
#Deleted in new
chr2	218979346	218979380	ENSG00000236445.4|LINC00608|lncRNA|chr2:218979346:218979380:+	0	+
#Deleted in new
chr2	218989865	218989940	ENSG00000236445.4|LINC00608|lncRNA|chr2:218989865:218989940:+	0	+
#Duplicated in new
chr2	219013901	219015721	ENSG00000224090.1|AC097468.1|lncRNA|chr2:219013901:219015721:+	0	+
#Split in new
chr22	19017833	19020248	ENSG00000273032.1|DGCR9|lncRNA|chr22:19017833:19020248:+	0	+
#Partially deleted in new
chr22	19023055	19023550	ENSG00000273164.1|DGCR10|lncRNA|chr22:19023055:19023550:+	0	+
#Partially deleted in new
chr2	219033691	219035664	ENSG00000181378.13|CFAP65|pc|chr2:219033691:219035664:-	0	-
#Deleted in new
chr2	219038895	219038942	ENSG00000181378.13|CFAP65|pc|chr2:219038895:219038942:-	0	-
#Deleted in new
chr2	219038895	219038944	ENSG00000181378.13|CFAP65|pc|chr2:219038895:219038944:-	0	-
#Deleted in new
chr2	219038895	219039006	ENSG00000181378.13|CFAP65|pc|chr2:219038895:219039006:-	0	-
#Partially deleted in new
chr2	219038895	219039050	ENSG00000181378.13|CFAP65|pc|chr2:219038895:219039050:-	0	-
#Partially deleted in new
chr2	219038895	219039057	ENSG00000181378.13|CFAP65|pc|chr2:219038895:219039057:-	0	-
#Deleted in new
chr22	19060565	19060955	ENSG00000070413.19|DGCR2|pc|chr22:19060565:19060955:-	0	-
#Deleted in new
chr22	19061040	19061843	ENSG00000281530.1|AC004461.2|lncRNA|chr22:19061040:19061843:-	0	-
#Deleted in new
chr22	19065184	19065189	ENSG00000070413.19|DGCR2|pc|chr22:19065184:19065189:-	0	-
#Deleted in new
chr22	19065755	19065904	ENSG00000070413.19|DGCR2|pc|chr22:19065755:19065904:-	0	-
#Partially deleted in new
chr22	19124345	19124503	ENSG00000223461.1|AC004471.1|lncRNA|chr22:19124345:19124503:+	0	+
#Deleted in new
chr22	19128092	19128449	ENSG00000272682.1|AC004471.2|lncRNA|chr22:19128092:19128449:-	0	-
#Partially deleted in new
chr2	219158819	219159331	ENSG00000187736.12|NHEJ1|pc|chr2:219158819:219159331:-	0	-
#Deleted in new
chr22	19180198	19180238	ENSG00000070371.15|CLTCL1|pc|chr22:19180198:19180238:-	0	-
#Deleted in new
chr22	19184395	19184536	ENSG00000070371.15|CLTCL1|pc|chr22:19184395:19184536:-	0	-
#Deleted in new
chr2	219195236	219195369	ENSG00000158552.12|ZFAND2B|pc|chr2:219195236:219195369:+	0	+
#Deleted in new
chr2	219200431	219200642	ENSG00000158552.12|ZFAND2B|pc|chr2:219200431:219200642:+	0	+
#Deleted in new
chr2	219203792	219204018	ENSG00000158552.12|ZFAND2B|pc|chr2:219203792:219204018:+	0	+
#Deleted in new
chr22	19207517	19207674	ENSG00000070371.15|CLTCL1|pc|chr22:19207517:19207674:-	0	-
#Deleted in new
chr22	19207517	19207676	ENSG00000070371.15|CLTCL1|pc|chr22:19207517:19207676:-	0	-
#Split in new
chr2	219230624	219232040	ENSG00000163516.13|ANKZF1|pc|chr2:219230624:219232040:+	0	+
#Partially deleted in new
chr2	219243778	219243942	ENSG00000163521.15|GLB1L|pc|chr2:219243778:219243942:-	0	-
#Partially deleted in new
chr2	219291469	219292896	ENSG00000054356.13|PTPRN|pc|chr2:219291469:219292896:-	0	-
#Partially deleted in new
chr2	219307017	219307314	ENSG00000054356.13|PTPRN|pc|chr2:219307017:219307314:-	0	-
#Partially deleted in new
chr2	21933335	21933547	ENSG00000231200.1|LINC01830|lncRNA|chr2:21933335:21933547:-	0	-
#Partially deleted in new
chr2	219373545	219374342	ENSG00000123992.18|DNPEP|pc|chr2:219373545:219374342:-	0	-
#Deleted in new
chr2	219388701	219388748	ENSG00000123992.18|DNPEP|pc|chr2:219388701:219388748:-	0	-
#Deleted in new
chr2	219393610	219393748	ENSG00000123992.18|DNPEP|pc|chr2:219393610:219393748:-	0	-
#Deleted in new
chr2	219425070	219425190	ENSG00000234638.1|AC053503.4|lncRNA|chr2:219425070:219425190:-	0	-
#Deleted in new
chr22	19430090	19430263	ENSG00000100084.14|HIRA|pc|chr22:19430090:19430263:-	0	-
#Partially deleted in new
chr22	19432938	19433348	ENSG00000185608.8|MRPL40|pc|chr22:19432938:19433348:+	0	+
#Deleted in new
chr22	19440885	19441694	ENSG00000242259.8|C22orf39|pc|chr22:19440885:19441694:-	0	-
#Deleted in new
chr22	19440907	19441694	ENSG00000242259.8|C22orf39|pc|chr22:19440907:19441694:-	0	-
#Partially deleted in new
chr22	19441776	19444390	ENSG00000242259.8|C22orf39|pc|chr22:19441776:19444390:-	0	-
#Partially deleted in new
chr22	19447664	19448232	ENSG00000242259.8|C22orf39|pc|chr22:19447664:19448232:-	0	-
#Deleted in new
chr22	19447892	19448325	ENSG00000185065.6|AC000068.1|lncRNA|chr22:19447892:19448325:+	0	+
#Partially deleted in new
chr22	19450620	19454830	ENSG00000070010.18|UFD1|pc|chr22:19450620:19454830:-	0	-
#Deleted in new
chr22	19451877	19452000	ENSG00000070010.18|UFD1|pc|chr22:19451877:19452000:-	0	-
#Deleted in new
chr22	19454178	19454605	ENSG00000273300.1|AC000068.3|lncRNA|chr22:19454178:19454605:+	0	+
#Deleted in new
chr2	219496354	219496482	ENSG00000072195.14|SPEG|pc|chr2:219496354:219496482:+	0	+
#Deleted in new
chr2	21951631	21951689	ENSG00000233005.1|AC018742.1|lncRNA|chr2:21951631:21951689:+	0	+
#Deleted in new
chr2	219626492	219626693	ENSG00000228973.1|AC009955.1|lncRNA|chr2:219626492:219626693:-	0	-
#Partially deleted in new
chr22	19667022	19667199	ENSG00000225007.1|AC000067.1|lncRNA|chr22:19667022:19667199:+	0	+
#Deleted in new
chr22	19667445	19667555	ENSG00000225007.1|AC000067.1|lncRNA|chr22:19667445:19667555:+	0	+
#Deleted in new
chr2	219685380	219687345	ENSG00000227308.2|AC009502.1|lncRNA|chr2:219685380:219687345:+	0	+
#Deleted in new
chr2	219685491	219685609	ENSG00000227308.2|AC009502.1|lncRNA|chr2:219685491:219685609:+	0	+
#Deleted in new
chr2	219686986	219687052	ENSG00000227308.2|AC009502.1|lncRNA|chr2:219686986:219687052:+	0	+
#Deleted in new
chr2	219714256	219714686	ENSG00000227308.2|AC009502.1|lncRNA|chr2:219714256:219714686:+	0	+
#Deleted in new
chr2	219730109	219730181	ENSG00000227308.2|AC009502.1|lncRNA|chr2:219730109:219730181:+	0	+
#Deleted in new
chr22	19779219	19779546	ENSG00000184058.13|TBX1|pc|chr22:19779219:19779546:+	0	+
#Deleted in new
chr22	19782912	19783032	ENSG00000184058.13|TBX1|pc|chr22:19782912:19783032:+	0	+
#Deleted in new
chr22	19783313	19783593	ENSG00000184058.13|TBX1|pc|chr22:19783313:19783593:+	0	+
#Deleted in new
chr22	19910934	19911071	ENSG00000184470.20|TXNRD2|pc|chr22:19910934:19911071:-	0	-
#Partially deleted in new
chr22	19915764	19916366	ENSG00000184470.20|TXNRD2|pc|chr22:19915764:19916366:-	0	-
#Deleted in new
chr22	19932356	19932553	ENSG00000184470.20|TXNRD2|pc|chr22:19932356:19932553:-	0	-
#Deleted in new
chr22	19937982	19938179	ENSG00000184470.20|TXNRD2|pc|chr22:19937982:19938179:-	0	-
#Deleted in new
chr22	19950941	19951052	ENSG00000093010.13|COMT|pc|chr22:19950941:19951052:+	0	+
#Deleted in new
chr22	19950978	19951052	ENSG00000093010.13|COMT|pc|chr22:19950978:19951052:+	0	+
#Deleted in new
chr22	19951502	19951654	ENSG00000093010.13|COMT|pc|chr22:19951502:19951654:+	0	+
#Deleted in new
chr22	19961696	19961874	ENSG00000093010.13|COMT|pc|chr22:19961696:19961874:+	0	+
#Deleted in new
chr22	19967163	19967694	ENSG00000093010.13|COMT|pc|chr22:19967163:19967694:+	0	+
#Partially deleted in new
chr22	19968535	19969975	ENSG00000093010.13|COMT|pc|chr22:19968535:19969975:+	0	+
#Deleted in new
chr22	20019180	20019299	ENSG00000183597.15|TANGO2|pc|chr22:20019180:20019299:+	0	+
#Deleted in new
chr22	20047969	20048180	ENSG00000183597.15|TANGO2|pc|chr22:20047969:20048180:+	0	+
#Deleted in new
chr22	20047969	20048328	ENSG00000183597.15|TANGO2|pc|chr22:20047969:20048328:+	0	+
#Partially deleted in new
chr22	20058029	20058473	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20058029:20058473:-	0	-
#Deleted in new
chr22	20061173	20061227	ENSG00000183597.15|TANGO2|pc|chr22:20061173:20061227:+	0	+
#Deleted in new
chr22	20062979	20063153	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20062979:20063153:-	0	-
#Deleted in new
chr22	20063010	20063128	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20063010:20063128:-	0	-
#Deleted in new
chr22	20063010	20063147	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20063010:20063147:-	0	-
#Deleted in new
chr22	20063010	20063150	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20063010:20063150:-	0	-
#Deleted in new
chr22	20063010	20063153	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20063010:20063153:-	0	-
#Deleted in new
chr22	20063033	20063128	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20063033:20063128:-	0	-
#Deleted in new
chr22	20063033	20063153	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20063033:20063153:-	0	-
#Deleted in new
chr22	20065145	20065251	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20065145:20065251:-	0	-
#Deleted in new
chr22	20065145	20065280	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20065145:20065280:-	0	-
#Partially deleted in new
chr22	20065495	20065705	ENSG00000268292.1|AC006547.3|lncRNA|chr22:20065495:20065705:-	0	-
#Partially deleted in new
chr22	20067013	20067249	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20067013:20067249:-	0	-
#Deleted in new
chr22	20069042	20069162	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20069042:20069162:-	0	-
#Deleted in new
chr22	20069042	20069164	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20069042:20069164:-	0	-
#Deleted in new
chr22	20069042	20069165	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20069042:20069165:-	0	-
#Deleted in new
chr22	20069970	20070261	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20069970:20070261:-	0	-
#Deleted in new
chr22	20069970	20070454	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20069970:20070454:-	0	-
#Deleted in new
chr22	20069970	20070500	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20069970:20070500:-	0	-
#Deleted in new
chr22	20069970	20070522	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20069970:20070522:-	0	-
#Deleted in new
chr22	20069970	20070543	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20069970:20070543:-	0	-
#Deleted in new
chr22	20069970	20070569	ENSG00000236540.7|AC006547.1|lncRNA|chr22:20069970:20070569:-	0	-
#Deleted in new
chr22	20122579	20122697	ENSG00000099901.16|RANBP1|pc|chr22:20122579:20122697:+	0	+
#Deleted in new
chr22	20122606	20122697	ENSG00000099901.16|RANBP1|pc|chr22:20122606:20122697:+	0	+
#Partially deleted in new
chr22	20124138	20125436	ENSG00000099901.16|RANBP1|pc|chr22:20124138:20125436:+	0	+
#Partially deleted in new
chr22	20204652	20204918	ENSG00000249923.1|AC007663.2|lncRNA|chr22:20204652:20204918:-	0	-
#Partially deleted in new
chr22	20268998	20269365	ENSG00000040608.13|RTN4R|pc|chr22:20268998:20269365:-	0	-
#Deleted in new
chr22	20283042	20283246	ENSG00000040608.13|RTN4R|pc|chr22:20283042:20283246:-	0	-
#Deleted in new
chr22	20318118	20318749	ENSG00000273343.1|AC007663.4|lncRNA|chr22:20318118:20318749:-	0	-
#Deleted in new
chr22	20320738	20321203	ENSG00000273139.1|AC007663.3|lncRNA|chr22:20320738:20321203:+	0	+
#Deleted in new
chr2	220322100	220322221	ENSG00000239498.1|AC019211.1|lncRNA|chr2:220322100:220322221:+	0	+
#Deleted in new
chr22	20338804	20339016	ENSG00000188280.11|AC007731.1|lncRNA|chr22:20338804:20339016:+	0	+
#Deleted in new
chr22	20340995	20341055	ENSG00000188280.11|AC007731.1|lncRNA|chr22:20340995:20341055:+	0	+
#Deleted in new
chr22	20340996	20341055	ENSG00000188280.11|AC007731.1|lncRNA|chr22:20340996:20341055:+	0	+
#Deleted in new
chr22	20341523	20341548	ENSG00000188280.11|AC007731.1|lncRNA|chr22:20341523:20341548:+	0	+
#Deleted in new
chr22	20343202	20343515	ENSG00000235578.1|AC007731.3|lncRNA|chr22:20343202:20343515:-	0	-
#Deleted in new
chr22	20344232	20344365	ENSG00000235578.1|AC007731.3|lncRNA|chr22:20344232:20344365:-	0	-
#Deleted in new
chr22	20344493	20344580	ENSG00000188280.11|AC007731.1|lncRNA|chr22:20344493:20344580:+	0	+
#Deleted in new
chr22	20349485	20349551	ENSG00000188280.11|AC007731.1|lncRNA|chr22:20349485:20349551:+	0	+
#Deleted in new
chr22	20350577	20350931	ENSG00000161133.16|USP41|pc|chr22:20350577:20350931:-	0	-
#Deleted in new
chr22	20351554	20351616	ENSG00000188280.11|AC007731.1|lncRNA|chr22:20351554:20351616:+	0	+
#Deleted in new
chr22	20352081	20352115	ENSG00000188280.11|AC007731.1|lncRNA|chr22:20352081:20352115:+	0	+
#Deleted in new
chr22	20352081	20352255	ENSG00000188280.11|AC007731.1|lncRNA|chr22:20352081:20352255:+	0	+
#Deleted in new
chr22	20352510	20354047	ENSG00000188280.11|AC007731.1|lncRNA|chr22:20352510:20354047:+	0	+
#Deleted in new
chr22	20354339	20354372	ENSG00000188280.11|AC007731.1|lncRNA|chr22:20354339:20354372:+	0	+
#Deleted in new
chr22	20372535	20372696	ENSG00000161133.16|USP41|pc|chr22:20372535:20372696:-	0	-
#Deleted in new
chr22	20380775	20380820	ENSG00000161133.16|USP41|pc|chr22:20380775:20380820:-	0	-
#Deleted in new
chr22	20387425	20387433	ENSG00000161133.16|USP41|pc|chr22:20387425:20387433:-	0	-
#Deleted in new
chr22	20389605	20389615	ENSG00000161133.16|USP41|pc|chr22:20389605:20389615:-	0	-
#Deleted in new
chr22	20390496	20390570	ENSG00000161133.16|USP41|pc|chr22:20390496:20390570:-	0	-
#Deleted in new
chr22	20390738	20390758	ENSG00000161133.16|USP41|pc|chr22:20390738:20390758:-	0	-
#Deleted in new
chr22	20394114	20394334	ENSG00000185252.18|ZNF74|pc|chr22:20394114:20394334:+	0	+
#Deleted in new
chr22	20394114	20394662	ENSG00000185252.18|ZNF74|pc|chr22:20394114:20394662:+	0	+
#Deleted in new
chr22	20394127	20394662	ENSG00000185252.18|ZNF74|pc|chr22:20394127:20394662:+	0	+
#Deleted in new
chr22	20394160	20394334	ENSG00000185252.18|ZNF74|pc|chr22:20394160:20394334:+	0	+
#Deleted in new
chr22	20394187	20395418	ENSG00000185252.18|ZNF74|pc|chr22:20394187:20395418:+	0	+
#Deleted in new
chr22	20394188	20394662	ENSG00000185252.18|ZNF74|pc|chr22:20394188:20394662:+	0	+
#Deleted in new
chr22	20394402	20394662	ENSG00000185252.18|ZNF74|pc|chr22:20394402:20394662:+	0	+
#Deleted in new
chr22	20394562	20394662	ENSG00000185252.18|ZNF74|pc|chr22:20394562:20394662:+	0	+
#Deleted in new
chr22	20394628	20394662	ENSG00000185252.18|ZNF74|pc|chr22:20394628:20394662:+	0	+
#Deleted in new
chr22	20395332	20395418	ENSG00000185252.18|ZNF74|pc|chr22:20395332:20395418:+	0	+
#Split in new
chr22	20399510	20401372	ENSG00000185252.18|ZNF74|pc|chr22:20399510:20401372:+	0	+
#Deleted in new
chr22	20399594	20399690	ENSG00000185252.18|ZNF74|pc|chr22:20399594:20399690:+	0	+
#Deleted in new
chr2	220450298	220450448	ENSG00000239498.1|AC019211.1|lncRNA|chr2:220450298:220450448:+	0	+
#Deleted in new
chr2	220450601	220450778	ENSG00000239498.1|AC019211.1|lncRNA|chr2:220450601:220450778:+	0	+
#Partially deleted in new
chr22	20488530	20489035	ENSG00000099910.16|KLHL22|pc|chr22:20488530:20489035:-	0	-
#Deleted in new
chr22	20489767	20489852	ENSG00000099910.16|KLHL22|pc|chr22:20489767:20489852:-	0	-
#Deleted in new
chr22	20491133	20491231	ENSG00000099910.16|KLHL22|pc|chr22:20491133:20491231:-	0	-
#Deleted in new
chr22	20491133	20491557	ENSG00000099910.16|KLHL22|pc|chr22:20491133:20491557:-	0	-
#Deleted in new
chr22	20500740	20500836	ENSG00000099917.17|MED15|pc|chr22:20500740:20500836:+	0	+
#Deleted in new
chr22	20518877	20518995	ENSG00000099917.17|MED15|pc|chr22:20518877:20518995:+	0	+
#Deleted in new
chr22	20522069	20522207	ENSG00000236003.1|AC007731.4|lncRNA|chr22:20522069:20522207:-	0	-
#Deleted in new
chr22	20957091	20957486	ENSG00000237476.1|LINC01637|lncRNA|chr22:20957091:20957486:+	0	+
#Deleted in new
chr22	20964390	20964679	ENSG00000237476.1|LINC01637|lncRNA|chr22:20964390:20964679:+	0	+
#Partially deleted in new
chr22	20981360	20981755	ENSG00000272829.1|AC002470.1|lncRNA|chr22:20981360:20981755:-	0	-
#Deleted in new
chr22	20986078	20986174	ENSG00000099949.18|LZTR1|pc|chr22:20986078:20986174:+	0	+
#Split in new
chr22	21002207	21002829	ENSG00000230513.1|THAP7-AS1|lncRNA|chr22:21002207:21002829:+	0	+
#Split in new
chr22	21009349	21010125	ENSG00000230513.1|THAP7-AS1|lncRNA|chr22:21009349:21010125:+	0	+
#Deleted in new
chr22	21009807	21009876	ENSG00000099957.16|P2RX6|pc|chr22:21009807:21009876:+	0	+
#Deleted in new
chr22	21042702	21043055	ENSG00000226872.1|AC002472.1|lncRNA|chr22:21042702:21043055:+	0	+
#Deleted in new
chr22	21053807	21053997	ENSG00000187905.10|LRRC74B|pc|chr22:21053807:21053997:+	0	+
#Partially deleted in new
chr22	21056529	21057200	ENSG00000187905.10|LRRC74B|pc|chr22:21056529:21057200:+	0	+
#Deleted in new
chr22	21061723	21062276	ENSG00000187905.10|LRRC74B|pc|chr22:21061723:21062276:+	0	+
#Deleted in new
chr22	21061723	21064168	ENSG00000187905.10|LRRC74B|pc|chr22:21061723:21064168:+	0	+
#Partially deleted in new
chr22	21122726	21124451	ENSG00000197210.7|AP000550.1|lncRNA|chr22:21122726:21124451:-	0	-
#Deleted in new
chr22	21167757	21167969	ENSG00000215498.9|FAM230B|lncRNA|chr22:21167757:21167969:+	0	+
#Deleted in new
chr22	21167828	21167969	ENSG00000215498.9|FAM230B|lncRNA|chr22:21167828:21167969:+	0	+
#Deleted in new
chr22	21167852	21167969	ENSG00000215498.9|FAM230B|lncRNA|chr22:21167852:21167969:+	0	+
#Deleted in new
chr22	21167884	21167969	ENSG00000215498.9|FAM230B|lncRNA|chr22:21167884:21167969:+	0	+
#Deleted in new
chr22	21169812	21170004	ENSG00000215498.9|FAM230B|lncRNA|chr22:21169812:21170004:+	0	+
#Deleted in new
chr22	21169864	21170004	ENSG00000215498.9|FAM230B|lncRNA|chr22:21169864:21170004:+	0	+
#Deleted in new
chr22	21169945	21170004	ENSG00000215498.9|FAM230B|lncRNA|chr22:21169945:21170004:+	0	+
#Deleted in new
chr22	21170472	21170497	ENSG00000215498.9|FAM230B|lncRNA|chr22:21170472:21170497:+	0	+
#Deleted in new
chr22	21170472	21170605	ENSG00000215498.9|FAM230B|lncRNA|chr22:21170472:21170605:+	0	+
#Deleted in new
chr22	21170472	21170655	ENSG00000215498.9|FAM230B|lncRNA|chr22:21170472:21170655:+	0	+
#Deleted in new
chr22	21170472	21170852	ENSG00000215498.9|FAM230B|lncRNA|chr22:21170472:21170852:+	0	+
#Deleted in new
chr22	21171080	21171208	ENSG00000215498.9|FAM230B|lncRNA|chr22:21171080:21171208:+	0	+
#Deleted in new
chr22	21173443	21173530	ENSG00000215498.9|FAM230B|lncRNA|chr22:21173443:21173530:+	0	+
#Deleted in new
chr22	21177891	21178549	ENSG00000234503.1|AP000550.2|lncRNA|chr22:21177891:21178549:-	0	-
#Deleted in new
chr22	21178430	21178496	ENSG00000215498.9|FAM230B|lncRNA|chr22:21178430:21178496:+	0	+
#Deleted in new
chr22	21179759	21179875	ENSG00000234503.1|AP000550.2|lncRNA|chr22:21179759:21179875:-	0	-
#Deleted in new
chr22	21180495	21180557	ENSG00000215498.9|FAM230B|lncRNA|chr22:21180495:21180557:+	0	+
#Deleted in new
chr22	21181022	21181056	ENSG00000215498.9|FAM230B|lncRNA|chr22:21181022:21181056:+	0	+
#Deleted in new
chr22	21181451	21182974	ENSG00000215498.9|FAM230B|lncRNA|chr22:21181451:21182974:+	0	+
#Deleted in new
chr22	21183270	21183322	ENSG00000215498.9|FAM230B|lncRNA|chr22:21183270:21183322:+	0	+
#Deleted in new
chr22	21186120	21186193	ENSG00000215498.9|FAM230B|lncRNA|chr22:21186120:21186193:+	0	+
#Partially deleted in new
chr22	21186120	21187077	ENSG00000215498.9|FAM230B|lncRNA|chr22:21186120:21187077:+	0	+
#Deleted in new
chr22	21186419	21186460	ENSG00000215498.9|FAM230B|lncRNA|chr22:21186419:21186460:+	0	+
#Partially deleted in new
chr22	21186922	21187077	ENSG00000215498.9|FAM230B|lncRNA|chr22:21186922:21187077:+	0	+
#Deleted in new
chr22	21191721	21192149	ENSG00000215498.9|FAM230B|lncRNA|chr22:21191721:21192149:+	0	+
#Deleted in new
chr22	21191721	21192156	ENSG00000215498.9|FAM230B|lncRNA|chr22:21191721:21192156:+	0	+
#Deleted in new
chr22	21300989	21301424	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21300989:21301424:-	0	-
#Deleted in new
chr22	21300990	21301424	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21300990:21301424:-	0	-
#Deleted in new
chr22	21300996	21301424	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21300996:21301424:-	0	-
#Partially deleted in new
chr22	21306068	21306223	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21306068:21306223:-	0	-
#Partially deleted in new
chr22	21306068	21307025	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21306068:21307025:-	0	-
#Deleted in new
chr22	21306685	21306726	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21306685:21306726:-	0	-
#Deleted in new
chr22	21306952	21307025	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21306952:21307025:-	0	-
#Deleted in new
chr22	21309820	21311344	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21309820:21311344:-	0	-
#Deleted in new
chr22	21311739	21311773	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21311739:21311773:-	0	-
#Deleted in new
chr22	21312238	21312300	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21312238:21312300:-	0	-
#Deleted in new
chr22	21312919	21313036	ENSG00000237407.1|AP000552.3|lncRNA|chr22:21312919:21313036:+	0	+
#Deleted in new
chr22	21314246	21314904	ENSG00000237407.1|AP000552.3|lncRNA|chr22:21314246:21314904:+	0	+
#Deleted in new
chr22	21314299	21314365	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21314299:21314365:-	0	-
#Deleted in new
chr22	21319269	21319356	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21319269:21319356:-	0	-
#Deleted in new
chr22	21321591	21321719	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21321591:21321719:-	0	-
#Deleted in new
chr22	21321947	21322327	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21321947:21322327:-	0	-
#Deleted in new
chr22	21322140	21322327	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21322140:21322327:-	0	-
#Deleted in new
chr22	21322194	21322327	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21322194:21322327:-	0	-
#Deleted in new
chr22	21322302	21322327	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21322302:21322327:-	0	-
#Deleted in new
chr22	21322795	21322854	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21322795:21322854:-	0	-
#Deleted in new
chr22	21322795	21322935	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21322795:21322935:-	0	-
#Deleted in new
chr22	21322795	21322984	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21322795:21322984:-	0	-
#Deleted in new
chr22	21324830	21324937	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21324830:21324937:-	0	-
#Deleted in new
chr22	21324830	21324967	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21324830:21324967:-	0	-
#Deleted in new
chr22	21324830	21325042	ENSG00000206142.9|AP000552.1|lncRNA|chr22:21324830:21325042:-	0	-
#Deleted in new
chr22	21354562	21354849	ENSG00000279920.1|LINC01651|lncRNA|chr22:21354562:21354849:+	0	+
#Deleted in new
chr22	21420635	21420757	ENSG00000169635.9|HIC2|pc|chr22:21420635:21420757:+	0	+
#Partially deleted in new
chr22	21466422	21467614	ENSG00000206140.10|TMEM191C|pc|chr22:21466422:21467614:+	0	+
#Deleted in new
chr22	21466449	21467023	ENSG00000206140.10|TMEM191C|pc|chr22:21466449:21467023:+	0	+
#Partially deleted in new
chr22	21469616	21471269	ENSG00000206140.10|TMEM191C|pc|chr22:21469616:21471269:+	0	+
#Deleted in new
chr2	221637542	221637597	ENSG00000234446.2|AC068489.1|lncRNA|chr2:221637542:221637597:+	0	+
#Deleted in new
chr22	21640843	21641284	ENSG00000273342.1|AP000553.2|lncRNA|chr22:21640843:21641284:+	0	+
#Deleted in new
chr2	221641607	221641813	ENSG00000234446.2|AC068489.1|lncRNA|chr2:221641607:221641813:+	0	+
#Deleted in new
chr22	21658642	21658686	ENSG00000207751.3|MIR130B|lncRNA|chr22:21658642:21658686:+	0	+
#Partially deleted in new
chr22	21661933	21662363	ENSG00000272954.1|AP000553.1|lncRNA|chr22:21661933:21662363:+	0	+
#Deleted in new
chr22	21669333	21669426	ENSG00000100023.18|PPIL2|pc|chr22:21669333:21669426:+	0	+
#Deleted in new
chr22	21670263	21670376	ENSG00000100023.18|PPIL2|pc|chr22:21670263:21670376:+	0	+
#Deleted in new
chr22	21670298	21670360	ENSG00000100023.18|PPIL2|pc|chr22:21670298:21670360:+	0	+
#Partially deleted in new
chr22	21685672	21685726	ENSG00000100023.18|PPIL2|pc|chr22:21685672:21685726:+	0	+
#Partially deleted in new
chr22	21695393	21696423	ENSG00000100023.18|PPIL2|pc|chr22:21695393:21696423:+	0	+
#Partially deleted in new
chr22	21703838	21704125	ENSG00000100027.14|YPEL1|pc|chr22:21703838:21704125:-	0	-
#Deleted in new
chr22	21704081	21704125	ENSG00000100027.14|YPEL1|pc|chr22:21704081:21704125:-	0	-
#Deleted in new
chr22	21924875	21925028	ENSG00000100034.13|PPM1F|pc|chr22:21924875:21925028:-	0	-
#Partially deleted in new
chr22	21924875	21925662	ENSG00000100034.13|PPM1F|pc|chr22:21924875:21925662:-	0	-
#Deleted in new
chr22	21932713	21932775	ENSG00000100034.13|PPM1F|pc|chr22:21932713:21932775:-	0	-
#Partially deleted in new
chr22	21934023	21936929	ENSG00000100034.13|PPM1F|pc|chr22:21934023:21936929:-	0	-
#Partially deleted in new
chr22	21936961	21937216	ENSG00000100034.13|PPM1F|pc|chr22:21936961:21937216:-	0	-
#Deleted in new
chr22	21940574	21940657	ENSG00000100034.13|PPM1F|pc|chr22:21940574:21940657:-	0	-
#Partially deleted in new
chr22	21972218	21972718	ENSG00000100038.19|TOP3B|pc|chr22:21972218:21972718:-	0	-
#Deleted in new
chr22	21975904	21975953	ENSG00000100038.19|TOP3B|pc|chr22:21975904:21975953:-	0	-
#Deleted in new
chr22	22036343	22036494	ENSG00000278657.1|AC245452.5|lncRNA|chr22:22036343:22036494:+	0	+
#Deleted in new
chr22	22039436	22040065	ENSG00000278657.1|AC245452.5|lncRNA|chr22:22039436:22040065:+	0	+
#Split in new
chr22	22264600	22273020	ENSG00000279278.1|AC245060.6|lncRNA|chr22:22264600:22273020:+	0	+
#Deleted in new
chr22	22283927	22287220	ENSG00000274422.1|AC245060.5|lncRNA|chr22:22283927:22287220:-	0	-
#Deleted in new
chr22	22293732	22294081	ENSG00000234630.1|AC245060.2|lncRNA|chr22:22293732:22294081:+	0	+
#Deleted in new
chr22	22294619	22294794	ENSG00000234630.1|AC245060.2|lncRNA|chr22:22294619:22294794:+	0	+
#Deleted in new
chr2	222360	222954	ENSG00000035115.21|SH3YL1|pc|chr2:222360:222954:-	0	-
#Deleted in new
chr22	22494062	22494180	ENSG00000275004.3|ZNF280B|pc|chr22:22494062:22494180:-	0	-
#Deleted in new
chr22	22507809	22507870	ENSG00000275004.3|ZNF280B|pc|chr22:22507809:22507870:-	0	-
#Deleted in new
chr22	22508658	22508733	ENSG00000275004.3|ZNF280B|pc|chr22:22508658:22508733:-	0	-
#Deleted in new
chr22	22508658	22509154	ENSG00000275004.3|ZNF280B|pc|chr22:22508658:22509154:-	0	-
#Deleted in new
chr22	22520088	22520270	ENSG00000169548.3|ZNF280A|pc|chr22:22520088:22520270:-	0	-
#Deleted in new
chr22	22553829	22554179	ENSG00000185686.17|PRAME|pc|chr22:22553829:22554179:-	0	-
#Deleted in new
chr22	22555835	22555926	ENSG00000185686.17|PRAME|pc|chr22:22555835:22555926:-	0	-
#Deleted in new
chr22	22556811	22556909	ENSG00000185686.17|PRAME|pc|chr22:22556811:22556909:-	0	-
#Deleted in new
chr22	22556811	22556930	ENSG00000185686.17|PRAME|pc|chr22:22556811:22556930:-	0	-
#Deleted in new
chr22	22556811	22556977	ENSG00000185686.17|PRAME|pc|chr22:22556811:22556977:-	0	-
#Deleted in new
chr22	22556811	22557086	ENSG00000185686.17|PRAME|pc|chr22:22556811:22557086:-	0	-
#Deleted in new
chr22	22556811	22557580	ENSG00000185686.17|PRAME|pc|chr22:22556811:22557580:-	0	-
#Deleted in new
chr22	22557544	22557580	ENSG00000185686.17|PRAME|pc|chr22:22557544:22557580:-	0	-
#Deleted in new
chr22	22557544	22557592	ENSG00000185686.17|PRAME|pc|chr22:22557544:22557592:-	0	-
#Deleted in new
chr22	22557544	22557721	ENSG00000185686.17|PRAME|pc|chr22:22557544:22557721:-	0	-
#Deleted in new
chr22	22557544	22557754	ENSG00000185686.17|PRAME|pc|chr22:22557544:22557754:-	0	-
#Deleted in new
chr22	22558970	22559083	ENSG00000185686.17|PRAME|pc|chr22:22558970:22559083:-	0	-
#Deleted in new
chr22	22558970	22559143	ENSG00000185686.17|PRAME|pc|chr22:22558970:22559143:-	0	-
#Deleted in new
chr22	22559174	22559267	ENSG00000185686.17|PRAME|pc|chr22:22559174:22559267:-	0	-
#Deleted in new
chr22	22559174	22559279	ENSG00000185686.17|PRAME|pc|chr22:22559174:22559279:-	0	-
#Deleted in new
chr22	22559174	22559288	ENSG00000185686.17|PRAME|pc|chr22:22559174:22559288:-	0	-
#Deleted in new
chr22	22559174	22559289	ENSG00000185686.17|PRAME|pc|chr22:22559174:22559289:-	0	-
#Deleted in new
chr22	22559174	22559340	ENSG00000185686.17|PRAME|pc|chr22:22559174:22559340:-	0	-
#Deleted in new
chr22	22559174	22559361	ENSG00000185686.17|PRAME|pc|chr22:22559174:22559361:-	0	-
#Deleted in new
chr22	22559342	22559407	ENSG00000220891.1|LL22NC03-63E9.3|lncRNA|chr22:22559342:22559407:+	0	+
#Deleted in new
chr22	22562862	22562972	ENSG00000220891.1|LL22NC03-63E9.3|lncRNA|chr22:22562862:22562972:+	0	+
#Deleted in new
chr22	22563666	22566602	ENSG00000220891.1|LL22NC03-63E9.3|lncRNA|chr22:22563666:22566602:+	0	+
#Partially deleted in new
chr2	222566898	222569719	ENSG00000261428.2|AC097461.1|lncRNA|chr2:222566898:222569719:-	0	-
#Deleted in new
chr22	22644474	22644647	ENSG00000100121.12|GGTLC2|pc|chr22:22644474:22644647:+	0	+
#Deleted in new
chr22	22692777	22693062	ENSG00000223999.1|AC244250.1|lncRNA|chr22:22692777:22693062:-	0	-
#Deleted in new
chr22	22693146	22693312	ENSG00000223999.1|AC244250.1|lncRNA|chr22:22693146:22693312:-	0	-
#Deleted in new
chr2	222887829	222887888	ENSG00000123983.13|ACSL3|pc|chr2:222887829:222887888:+	0	+
#Deleted in new
chr2	222900673	222900780	ENSG00000123983.13|ACSL3|pc|chr2:222900673:222900780:+	0	+
#Partially deleted in new
chr2	222919229	222919363	ENSG00000234193.1|AC013476.1|lncRNA|chr2:222919229:222919363:-	0	-
#Partially deleted in new
chr2	222933165	222933723	ENSG00000123983.13|ACSL3|pc|chr2:222933165:222933723:+	0	+
#Deleted in new
chr22	23131176	23131677	ENSG00000100218.11|RSPH14|pc|chr22:23131176:23131677:-	0	-
#Deleted in new
chr22	23135992	23136319	ENSG00000100218.11|RSPH14|pc|chr22:23135992:23136319:-	0	-
#Deleted in new
chr22	23136197	23136322	ENSG00000100218.11|RSPH14|pc|chr22:23136197:23136322:-	0	-
#Deleted in new
chr2	223193068	223193185	ENSG00000152049.6|KCNE4|pc|chr2:223193068:223193185:+	0	+
#Partially deleted in new
chr2	223197797	223198399	ENSG00000152049.6|KCNE4|pc|chr2:223197797:223198399:+	0	+
#Deleted in new
chr22	23198252	23198385	ENSG00000186716.20|BCR|pc|chr22:23198252:23198385:+	0	+
#Deleted in new
chr22	23198331	23198385	ENSG00000186716.20|BCR|pc|chr22:23198331:23198385:+	0	+
#Deleted in new
chr22	23242817	23242985	ENSG00000186716.20|BCR|pc|chr22:23242817:23242985:+	0	+
#Deleted in new
chr22	23251031	23251240	ENSG00000186716.20|BCR|pc|chr22:23251031:23251240:+	0	+
#Deleted in new
chr22	23302340	23302863	ENSG00000186716.20|BCR|pc|chr22:23302340:23302863:+	0	+
#Deleted in new
chr22	23307567	23307764	ENSG00000186716.20|BCR|pc|chr22:23307567:23307764:+	0	+
#Partially deleted in new
chr22	23326615	23326791	ENSG00000236611.1|LINC02556|lncRNA|chr22:23326615:23326791:+	0	+
#Deleted in new
chr22	23328323	23328493	ENSG00000236611.1|LINC02556|lncRNA|chr22:23328323:23328493:+	0	+
#Partially deleted in new
chr22	23433563	23434061	ENSG00000234928.1|LINC01659|lncRNA|chr22:23433563:23434061:+	0	+
#Partially deleted in new
chr22	23434559	23434730	ENSG00000234928.1|LINC01659|lncRNA|chr22:23434559:23434730:+	0	+
#Partially deleted in new
chr22	23434559	23434731	ENSG00000234928.1|LINC01659|lncRNA|chr22:23434559:23434731:+	0	+
#Deleted in new
chr22	23462085	23462678	ENSG00000178248.11|LINC01658|lncRNA|chr22:23462085:23462678:-	0	-
#Deleted in new
chr22	23467274	23467316	ENSG00000178248.11|LINC01658|lncRNA|chr22:23467274:23467316:-	0	-
#Deleted in new
chr22	23469995	23470037	ENSG00000178248.11|LINC01658|lncRNA|chr22:23469995:23470037:-	0	-
#Deleted in new
chr22	23470314	23470336	ENSG00000178248.11|LINC01658|lncRNA|chr22:23470314:23470336:-	0	-
#Deleted in new
chr22	23470807	23471163	ENSG00000178248.11|LINC01658|lncRNA|chr22:23470807:23471163:-	0	-
#Deleted in new
chr22	23473377	23473411	ENSG00000178248.11|LINC01658|lncRNA|chr22:23473377:23473411:-	0	-
#Deleted in new
chr22	23473876	23473938	ENSG00000178248.11|LINC01658|lncRNA|chr22:23473876:23473938:-	0	-
#Deleted in new
chr22	23480416	23480500	ENSG00000178248.11|LINC01658|lncRNA|chr22:23480416:23480500:-	0	-
#Deleted in new
chr22	23482574	23482605	ENSG00000178248.11|LINC01658|lncRNA|chr22:23482574:23482605:-	0	-
#Deleted in new
chr22	23483067	23483126	ENSG00000178248.11|LINC01658|lncRNA|chr22:23483067:23483126:-	0	-
#Deleted in new
chr22	23486878	23486980	ENSG00000178248.11|LINC01658|lncRNA|chr22:23486878:23486980:-	0	-
#Deleted in new
chr2	223499159	223499253	ENSG00000231189.1|AC013448.1|lncRNA|chr2:223499159:223499253:+	0	+
#Deleted in new
chr2	223510228	223510933	ENSG00000235610.1|AC013448.2|lncRNA|chr2:223510228:223510933:+	0	+
#Deleted in new
chr22	23512493	23512643	ENSG00000225413.2|LINC02557|lncRNA|chr22:23512493:23512643:-	0	-
#Deleted in new
chr22	23513275	23513602	ENSG00000225413.2|LINC02557|lncRNA|chr22:23513275:23513602:-	0	-
#Deleted in new
chr22	23536880	23537136	ENSG00000280623.1|PCAT14|lncRNA|chr22:23536880:23537136:+	0	+
#Deleted in new
chr22	23536898	23537136	ENSG00000280623.1|PCAT14|lncRNA|chr22:23536898:23537136:+	0	+
#Deleted in new
chr22	23538760	23538838	ENSG00000280623.1|PCAT14|lncRNA|chr22:23538760:23538838:+	0	+
#Deleted in new
chr22	23538760	23539480	ENSG00000280623.1|PCAT14|lncRNA|chr22:23538760:23539480:+	0	+
#Deleted in new
chr22	23543862	23547797	ENSG00000280623.1|PCAT14|lncRNA|chr22:23543862:23547797:+	0	+
#Deleted in new
chr22	23544227	23544306	ENSG00000280623.1|PCAT14|lncRNA|chr22:23544227:23544306:+	0	+
#Deleted in new
chr22	23546485	23547167	ENSG00000280623.1|PCAT14|lncRNA|chr22:23546485:23547167:+	0	+
#Deleted in new
chr22	23572545	23572624	ENSG00000224277.5|AP000345.1|lncRNA|chr22:23572545:23572624:+	0	+
#Partially deleted in new
chr22	23580879	23581563	ENSG00000272733.1|AP000345.2|lncRNA|chr22:23580879:23581563:-	0	-
#Partially deleted in new
chr22	23583132	23583478	ENSG00000272733.1|AP000345.2|lncRNA|chr22:23583132:23583478:-	0	-
#Deleted in new
chr22	23613286	23613330	ENSG00000189269.12|DRICH1|pc|chr22:23613286:23613330:-	0	-
#Deleted in new
chr22	23613288	23613330	ENSG00000189269.12|DRICH1|pc|chr22:23613288:23613330:-	0	-
#Deleted in new
chr22	23613638	23613660	ENSG00000189269.12|DRICH1|pc|chr22:23613638:23613660:-	0	-
#Deleted in new
chr22	23614134	23614214	ENSG00000189269.12|DRICH1|pc|chr22:23614134:23614214:-	0	-
#Deleted in new
chr22	23616852	23616874	ENSG00000189269.12|DRICH1|pc|chr22:23616852:23616874:-	0	-
#Deleted in new
chr22	23617574	23617657	ENSG00000189269.12|DRICH1|pc|chr22:23617574:23617657:-	0	-
#Deleted in new
chr22	23619363	23619393	ENSG00000189269.12|DRICH1|pc|chr22:23619363:23619393:-	0	-
#Deleted in new
chr22	23620593	23620615	ENSG00000189269.12|DRICH1|pc|chr22:23620593:23620615:-	0	-
#Deleted in new
chr22	23622090	23622176	ENSG00000189269.12|DRICH1|pc|chr22:23622090:23622176:-	0	-
#Deleted in new
chr22	23624882	23624904	ENSG00000189269.12|DRICH1|pc|chr22:23624882:23624904:-	0	-
#Deleted in new
chr22	23625980	23626048	ENSG00000189269.12|DRICH1|pc|chr22:23625980:23626048:-	0	-
#Deleted in new
chr22	23630617	23630962	ENSG00000211683.3|AP000346.1|lncRNA|chr22:23630617:23630962:-	0	-
#Deleted in new
chr22	23632787	23632910	ENSG00000211683.3|AP000346.1|lncRNA|chr22:23632787:23632910:-	0	-
#Deleted in new
chr22	23635935	23636083	ENSG00000211683.3|AP000346.1|lncRNA|chr22:23635935:23636083:-	0	-
#Deleted in new
chr22	23637682	23637804	ENSG00000211683.3|AP000346.1|lncRNA|chr22:23637682:23637804:-	0	-
#Deleted in new
chr22	23688135	23688305	ENSG00000159496.14|RGL4|pc|chr22:23688135:23688305:+	0	+
#Partially deleted in new
chr22	23688141	23688851	ENSG00000159496.14|RGL4|pc|chr22:23688141:23688851:+	0	+
#Deleted in new
chr22	23690231	23690293	ENSG00000273000.5|AP000347.2|lncRNA|chr22:23690231:23690293:-	0	-
#Deleted in new
chr22	23690231	23690356	ENSG00000273000.5|AP000347.2|lncRNA|chr22:23690231:23690356:-	0	-
#Deleted in new
chr22	23690235	23690356	ENSG00000228315.11|GUSBP11|lncRNA|chr22:23690235:23690356:-	0	-
#Partially deleted in new
chr22	23691305	23692209	ENSG00000159496.14|RGL4|pc|chr22:23691305:23692209:+	0	+
#Partially deleted in new
chr22	23694118	23695517	ENSG00000228315.11|GUSBP11|lncRNA|chr22:23694118:23695517:-	0	-
#Partially deleted in new
chr22	23694118	23695517	ENSG00000273000.5|AP000347.2|lncRNA|chr22:23694118:23695517:-	0	-
#Deleted in new
chr22	23694949	23695019	ENSG00000159496.14|RGL4|pc|chr22:23694949:23695019:+	0	+
#Deleted in new
chr22	23695172	23695517	ENSG00000228315.11|GUSBP11|lncRNA|chr22:23695172:23695517:-	0	-
#Deleted in new
chr22	23697837	23697861	ENSG00000159496.14|RGL4|pc|chr22:23697837:23697861:+	0	+
#Deleted in new
chr22	23698414	23698544	ENSG00000159496.14|RGL4|pc|chr22:23698414:23698544:+	0	+
#Deleted in new
chr22	23698414	23698548	ENSG00000159496.14|RGL4|pc|chr22:23698414:23698548:+	0	+
#Deleted in new
chr22	23698554	23698645	ENSG00000159496.14|RGL4|pc|chr22:23698554:23698645:+	0	+
#Deleted in new
chr22	23698554	23698651	ENSG00000159496.14|RGL4|pc|chr22:23698554:23698651:+	0	+
#Duplicated in new
chr22	23698843	23698978	ENSG00000159496.14|RGL4|pc|chr22:23698843:23698978:+	0	+
#Deleted in new
chr22	23700725	23700845	ENSG00000228315.11|GUSBP11|lncRNA|chr22:23700725:23700845:-	0	-
#Deleted in new
chr22	23705428	23705541	ENSG00000228315.11|GUSBP11|lncRNA|chr22:23705428:23705541:-	0	-
#Deleted in new
chr22	23705428	23705541	ENSG00000273000.5|AP000347.2|lncRNA|chr22:23705428:23705541:-	0	-
#Deleted in new
chr22	23709129	23709241	ENSG00000228315.11|GUSBP11|lncRNA|chr22:23709129:23709241:-	0	-
#Deleted in new
chr22	23709129	23709241	ENSG00000273000.5|AP000347.2|lncRNA|chr22:23709129:23709241:-	0	-
#Deleted in new
chr22	23709785	23709867	ENSG00000228315.11|GUSBP11|lncRNA|chr22:23709785:23709867:-	0	-
#Deleted in new
chr22	23709785	23709867	ENSG00000273000.5|AP000347.2|lncRNA|chr22:23709785:23709867:-	0	-
#Split in new
chr22	23738677	23745219	ENSG00000187792.4|ZNF70|pc|chr22:23738677:23745219:-	0	-
#Partially deleted in new
chr22	23768225	23768793	ENSG00000099953.9|MMP11|pc|chr22:23768225:23768793:+	0	+
#Deleted in new
chr22	23768642	23768793	ENSG00000099953.9|MMP11|pc|chr22:23768642:23768793:+	0	+
#Deleted in new
chr22	23768659	23768793	ENSG00000099953.9|MMP11|pc|chr22:23768659:23768793:+	0	+
#Deleted in new
chr22	23771117	23771299	ENSG00000099953.9|MMP11|pc|chr22:23771117:23771299:+	0	+
#Deleted in new
chr22	23771186	23771307	ENSG00000099953.9|MMP11|pc|chr22:23771186:23771307:+	0	+
#Deleted in new
chr22	23777640	23777808	ENSG00000099953.9|MMP11|pc|chr22:23777640:23777808:+	0	+
#Deleted in new
chr2	223855715	223855916	ENSG00000085449.14|WDFY1|pc|chr2:223855715:223855916:-	0	-
#Deleted in new
chr22	23856426	23857039	ENSG00000272973.1|AP000350.5|lncRNA|chr22:23856426:23857039:-	0	-
#Deleted in new
chr22	23856702	23856991	ENSG00000133460.19|SLC2A11|pc|chr22:23856702:23856991:+	0	+
#Deleted in new
chr22	23856862	23856991	ENSG00000133460.19|SLC2A11|pc|chr22:23856862:23856991:+	0	+
#Deleted in new
chr22	23856871	23856991	ENSG00000133460.19|SLC2A11|pc|chr22:23856871:23856991:+	0	+
#Deleted in new
chr22	23856933	23856991	ENSG00000133460.19|SLC2A11|pc|chr22:23856933:23856991:+	0	+
#Deleted in new
chr22	23856945	23856991	ENSG00000133460.19|SLC2A11|pc|chr22:23856945:23856991:+	0	+
#Deleted in new
chr22	23856950	23856991	ENSG00000133460.19|SLC2A11|pc|chr22:23856950:23856991:+	0	+
#Deleted in new
chr22	23856956	23856991	ENSG00000133460.19|SLC2A11|pc|chr22:23856956:23856991:+	0	+
#Deleted in new
chr22	23856961	23856991	ENSG00000133460.19|SLC2A11|pc|chr22:23856961:23856991:+	0	+
#Deleted in new
chr22	23856999	23857531	ENSG00000133460.19|SLC2A11|pc|chr22:23856999:23857531:+	0	+
#Deleted in new
chr22	23857335	23857531	ENSG00000133460.19|SLC2A11|pc|chr22:23857335:23857531:+	0	+
#Deleted in new
chr22	23857416	23857531	ENSG00000133460.19|SLC2A11|pc|chr22:23857416:23857531:+	0	+
#Deleted in new
chr22	23857420	23857531	ENSG00000133460.19|SLC2A11|pc|chr22:23857420:23857531:+	0	+
#Deleted in new
chr22	23857470	23857531	ENSG00000133460.19|SLC2A11|pc|chr22:23857470:23857531:+	0	+
#Deleted in new
chr22	23857874	23858029	ENSG00000133460.19|SLC2A11|pc|chr22:23857874:23858029:+	0	+
#Deleted in new
chr22	23857894	23858029	ENSG00000133460.19|SLC2A11|pc|chr22:23857894:23858029:+	0	+
#Deleted in new
chr22	23857918	23858156	ENSG00000133460.19|SLC2A11|pc|chr22:23857918:23858156:+	0	+
#Deleted in new
chr22	23857960	23858029	ENSG00000133460.19|SLC2A11|pc|chr22:23857960:23858029:+	0	+
#Deleted in new
chr22	23857962	23858029	ENSG00000133460.19|SLC2A11|pc|chr22:23857962:23858029:+	0	+
#Deleted in new
chr22	23862103	23862202	ENSG00000133460.19|SLC2A11|pc|chr22:23862103:23862202:+	0	+
#Deleted in new
chr22	23862103	23862325	ENSG00000133460.19|SLC2A11|pc|chr22:23862103:23862325:+	0	+
#Deleted in new
chr22	23862187	23862202	ENSG00000251357.4|AP000350.4|pc|chr22:23862187:23862202:+	0	+
#Partially deleted in new
chr22	23865247	23873277	ENSG00000279467.1|AP000350.7|lncRNA|chr22:23865247:23873277:-	0	-
#Deleted in new
chr22	23867734	23867899	ENSG00000133460.19|SLC2A11|pc|chr22:23867734:23867899:+	0	+
#Deleted in new
chr22	23868480	23868641	ENSG00000133460.19|SLC2A11|pc|chr22:23868480:23868641:+	0	+
#Deleted in new
chr22	23868480	23868641	ENSG00000251357.4|AP000350.4|pc|chr22:23868480:23868641:+	0	+
#Deleted in new
chr22	23868480	23868796	ENSG00000133460.19|SLC2A11|pc|chr22:23868480:23868796:+	0	+
#Deleted in new
chr22	23877041	23877171	ENSG00000133460.19|SLC2A11|pc|chr22:23877041:23877171:+	0	+
#Deleted in new
chr22	23877041	23877171	ENSG00000251357.4|AP000350.4|pc|chr22:23877041:23877171:+	0	+
#Deleted in new
chr22	23877041	23877172	ENSG00000133460.19|SLC2A11|pc|chr22:23877041:23877172:+	0	+
#Deleted in new
chr22	23877041	23877287	ENSG00000133460.19|SLC2A11|pc|chr22:23877041:23877287:+	0	+
#Deleted in new
chr22	23877041	23877328	ENSG00000133460.19|SLC2A11|pc|chr22:23877041:23877328:+	0	+
#Partially deleted in new
chr22	23877384	23877869	ENSG00000133460.19|SLC2A11|pc|chr22:23877384:23877869:+	0	+
#Deleted in new
chr22	23880408	23882646	ENSG00000133460.19|SLC2A11|pc|chr22:23880408:23882646:+	0	+
#Deleted in new
chr22	23882458	23882646	ENSG00000133460.19|SLC2A11|pc|chr22:23882458:23882646:+	0	+
#Deleted in new
chr22	23882494	23882646	ENSG00000133460.19|SLC2A11|pc|chr22:23882494:23882646:+	0	+
#Deleted in new
chr22	23882758	23882869	ENSG00000133460.19|SLC2A11|pc|chr22:23882758:23882869:+	0	+
#Deleted in new
chr22	23882758	23882951	ENSG00000133460.19|SLC2A11|pc|chr22:23882758:23882951:+	0	+
#Deleted in new
chr22	23882758	23882952	ENSG00000133460.19|SLC2A11|pc|chr22:23882758:23882952:+	0	+
#Deleted in new
chr22	23882758	23883307	ENSG00000133460.19|SLC2A11|pc|chr22:23882758:23883307:+	0	+
#Deleted in new
chr22	23882758	23884024	ENSG00000133460.19|SLC2A11|pc|chr22:23882758:23884024:+	0	+
#Deleted in new
chr22	23882959	23884429	ENSG00000133460.19|SLC2A11|pc|chr22:23882959:23884429:+	0	+
#Deleted in new
chr22	23883771	23883873	ENSG00000133460.19|SLC2A11|pc|chr22:23883771:23883873:+	0	+
#Deleted in new
chr22	23883771	23884429	ENSG00000133460.19|SLC2A11|pc|chr22:23883771:23884429:+	0	+
#Deleted in new
chr22	23883873	23884024	ENSG00000133460.19|SLC2A11|pc|chr22:23883873:23884024:+	0	+
#Deleted in new
chr22	23883948	23884024	ENSG00000133460.19|SLC2A11|pc|chr22:23883948:23884024:+	0	+
#Deleted in new
chr22	23884301	23884429	ENSG00000133460.19|SLC2A11|pc|chr22:23884301:23884429:+	0	+
#Deleted in new
chr22	23884622	23886112	ENSG00000133460.19|SLC2A11|pc|chr22:23884622:23886112:+	0	+
#Deleted in new
chr22	23884648	23884784	ENSG00000133460.19|SLC2A11|pc|chr22:23884648:23884784:+	0	+
#Deleted in new
chr22	23884648	23884867	ENSG00000133460.19|SLC2A11|pc|chr22:23884648:23884867:+	0	+
#Deleted in new
chr22	23884648	23884933	ENSG00000133460.19|SLC2A11|pc|chr22:23884648:23884933:+	0	+
#Deleted in new
chr22	23884648	23885536	ENSG00000133460.19|SLC2A11|pc|chr22:23884648:23885536:+	0	+
#Deleted in new
chr22	23884648	23885551	ENSG00000133460.19|SLC2A11|pc|chr22:23884648:23885551:+	0	+
#Deleted in new
chr22	23884648	23885553	ENSG00000133460.19|SLC2A11|pc|chr22:23884648:23885553:+	0	+
#Deleted in new
chr22	23884648	23886309	ENSG00000133460.19|SLC2A11|pc|chr22:23884648:23886309:+	0	+
#Deleted in new
chr22	23895828	23896110	ENSG00000218537.1|MIF-AS1|lncRNA|chr22:23895828:23896110:-	0	-
#Deleted in new
chr22	23898843	23898930	ENSG00000218537.1|MIF-AS1|lncRNA|chr22:23898843:23898930:-	0	-
#Deleted in new
chr2	223965700	223965904	ENSG00000228802.1|AC073641.1|lncRNA|chr2:223965700:223965904:-	0	-
#Deleted in new
chr22	23969210	23969873	ENSG00000272787.1|AC253536.6|lncRNA|chr22:23969210:23969873:+	0	+
#Deleted in new
chr22	23973103	23973343	ENSG00000099977.13|DDT|pc|chr22:23973103:23973343:-	0	-
#Deleted in new
chr22	23973103	23973347	ENSG00000099977.13|DDT|pc|chr22:23973103:23973347:-	0	-
#Deleted in new
chr22	23973104	23973183	ENSG00000099977.13|DDT|pc|chr22:23973104:23973183:-	0	-
#Deleted in new
chr22	23979725	23979828	ENSG00000099977.13|DDT|pc|chr22:23979725:23979828:-	0	-
#Deleted in new
chr22	24011191	24011367	ENSG00000099991.17|CABIN1|pc|chr22:24011191:24011367:+	0	+
#Deleted in new
chr22	24011314	24011367	ENSG00000099991.17|CABIN1|pc|chr22:24011314:24011367:+	0	+
#Deleted in new
chr22	24011347	24011367	ENSG00000099991.17|CABIN1|pc|chr22:24011347:24011367:+	0	+
#Deleted in new
chr22	24011415	24011728	ENSG00000099991.17|CABIN1|pc|chr22:24011415:24011728:+	0	+
#Deleted in new
chr22	24011417	24011728	ENSG00000099991.17|CABIN1|pc|chr22:24011417:24011728:+	0	+
#Deleted in new
chr2	224030071	224030207	ENSG00000135919.12|SERPINE2|pc|chr2:224030071:224030207:-	0	-
#Deleted in new
chr22	24220491	24220584	ENSG00000099998.17|GGT5|pc|chr22:24220491:24220584:-	0	-
#Deleted in new
chr22	24276699	24276803	ENSG00000100014.19|SPECC1L|pc|chr22:24276699:24276803:+	0	+
#Deleted in new
chr22	24276699	24276803	ENSG00000258555.6|SPECC1L-ADORA2A|pc|chr22:24276699:24276803:+	0	+
#Deleted in new
chr22	24343481	24343603	ENSG00000258555.6|SPECC1L-ADORA2A|pc|chr22:24343481:24343603:+	0	+
#Deleted in new
chr2	224400380	224400505	ENSG00000124019.9|FAM124B|pc|chr2:224400380:224400505:-	0	-
#Deleted in new
chr22	24452210	24452328	ENSG00000178803.10|ADORA2A-AS1|lncRNA|chr22:24452210:24452328:-	0	-
#Partially deleted in new
chr2	224464681	224464922	ENSG00000274629.1|AC073052.2|lncRNA|chr2:224464681:224464922:+	0	+
#Deleted in new
chr2	224467802	224467855	ENSG00000274629.1|AC073052.2|lncRNA|chr2:224467802:224467855:+	0	+
#Deleted in new
chr2	224485210	224485384	ENSG00000036257.12|CUL3|pc|chr2:224485210:224485384:-	0	-
#Partially deleted in new
chr22	24494106	24495507	ENSG00000100024.14|UPB1|pc|chr22:24494106:24495507:+	0	+
#Deleted in new
chr22	24494689	24494795	ENSG00000178803.10|ADORA2A-AS1|lncRNA|chr22:24494689:24494795:-	0	-
#Deleted in new
chr22	24494689	24494800	ENSG00000178803.10|ADORA2A-AS1|lncRNA|chr22:24494689:24494800:-	0	-
#Deleted in new
chr22	24494689	24495074	ENSG00000178803.10|ADORA2A-AS1|lncRNA|chr22:24494689:24495074:-	0	-
#Deleted in new
chr22	24502336	24503738	ENSG00000100024.14|UPB1|pc|chr22:24502336:24503738:+	0	+
#Deleted in new
chr22	24516507	24516752	ENSG00000228923.1|AP000355.1|lncRNA|chr22:24516507:24516752:+	0	+
#Deleted in new
chr22	24519800	24519930	ENSG00000100024.14|UPB1|pc|chr22:24519800:24519930:+	0	+
#Deleted in new
chr22	24581931	24582052	ENSG00000100028.11|SNRPD3|pc|chr22:24581931:24582052:+	0	+
#Deleted in new
chr22	24598053	24598206	ENSG00000230947.2|AP000356.1|lncRNA|chr22:24598053:24598206:+	0	+
#Partially deleted in new
chr22	24599187	24599398	ENSG00000230947.2|AP000356.1|lncRNA|chr22:24599187:24599398:+	0	+
#Partially deleted in new
chr22	24609461	24610033	ENSG00000100031.18|GGT1|pc|chr22:24609461:24610033:+	0	+
#Deleted in new
chr22	24609964	24609980	ENSG00000100028.11|SNRPD3|pc|chr22:24609964:24609980:+	0	+
#Deleted in new
chr22	24615861	24615972	ENSG00000100031.18|GGT1|pc|chr22:24615861:24615972:+	0	+
#Split in new
chr22	24645170	24647261	ENSG00000284070.1|AP000356.2|lncRNA|chr22:24645170:24647261:-	0	-
#Split in new
chr22	24650158	24651657	ENSG00000284070.1|AP000356.2|lncRNA|chr22:24650158:24651657:-	0	-
#Partially deleted in new
chr22	24691121	24691561	ENSG00000282012.1|AP000357.2|lncRNA|chr22:24691121:24691561:-	0	-
#Deleted in new
chr22	24695846	24696003	ENSG00000282012.1|AP000357.2|lncRNA|chr22:24695846:24696003:-	0	-
#Partially deleted in new
chr22	24719033	24719588	ENSG00000184571.13|PIWIL3|pc|chr22:24719033:24719588:-	0	-
#Deleted in new
chr22	24724886	24725037	ENSG00000184571.13|PIWIL3|pc|chr22:24724886:24725037:-	0	-
#Deleted in new
chr22	24725444	24725515	ENSG00000184571.13|PIWIL3|pc|chr22:24725444:24725515:-	0	-
#Deleted in new
chr22	24734083	24734156	ENSG00000184571.13|PIWIL3|pc|chr22:24734083:24734156:-	0	-
#Deleted in new
chr22	24748906	24749021	ENSG00000184571.13|PIWIL3|pc|chr22:24748906:24749021:-	0	-
#Deleted in new
chr22	24749403	24749521	ENSG00000184571.13|PIWIL3|pc|chr22:24749403:24749521:-	0	-
#Deleted in new
chr22	24754783	24754864	ENSG00000184571.13|PIWIL3|pc|chr22:24754783:24754864:-	0	-
#Deleted in new
chr22	24759868	24759989	ENSG00000184571.13|PIWIL3|pc|chr22:24759868:24759989:-	0	-
#Deleted in new
chr22	24761878	24761961	ENSG00000184571.13|PIWIL3|pc|chr22:24761878:24761961:-	0	-
#Deleted in new
chr22	24762306	24762521	ENSG00000184571.13|PIWIL3|pc|chr22:24762306:24762521:-	0	-
#Deleted in new
chr22	24762397	24762521	ENSG00000184571.13|PIWIL3|pc|chr22:24762397:24762521:-	0	-
#Deleted in new
chr22	24762397	24762523	ENSG00000184571.13|PIWIL3|pc|chr22:24762397:24762523:-	0	-
#Deleted in new
chr22	24769670	24769789	ENSG00000184571.13|PIWIL3|pc|chr22:24769670:24769789:-	0	-
#Deleted in new
chr22	24774321	24774477	ENSG00000184571.13|PIWIL3|pc|chr22:24774321:24774477:-	0	-
#Deleted in new
chr22	24774321	24774716	ENSG00000184571.13|PIWIL3|pc|chr22:24774321:24774716:-	0	-
#Deleted in new
chr22	24774321	24774720	ENSG00000184571.13|PIWIL3|pc|chr22:24774321:24774720:-	0	-
#Deleted in new
chr22	24813677	24813755	ENSG00000167037.18|SGSM1|pc|chr22:24813677:24813755:+	0	+
#Deleted in new
chr22	24814008	24814192	ENSG00000167037.18|SGSM1|pc|chr22:24814008:24814192:+	0	+
#Partially deleted in new
chr22	25009684	25015072	ENSG00000279085.1|AL022323.3|lncRNA|chr22:25009684:25015072:-	0	-
#Deleted in new
chr22	25014429	25014566	ENSG00000197077.13|KIAA1671|pc|chr22:25014429:25014566:+	0	+
#Partially deleted in new
chr22	25022593	25024652	ENSG00000279548.1|AL022323.5|lncRNA|chr22:25022593:25024652:-	0	-
#Partially deleted in new
chr22	25048966	25051966	ENSG00000279006.1|AL022323.2|lncRNA|chr22:25048966:25051966:-	0	-
#Deleted in new
chr22	25052121	25065241	ENSG00000279110.1|AL022323.4|lncRNA|chr22:25052121:25065241:-	0	-
#Deleted in new
chr22	25102432	25102918	ENSG00000203280.4|AL022323.1|lncRNA|chr22:25102432:25102918:-	0	-
#Deleted in new
chr22	25110000	25110118	ENSG00000203280.4|AL022323.1|lncRNA|chr22:25110000:25110118:-	0	-
#Partially deleted in new
chr22	25184976	25186451	ENSG00000197077.13|KIAA1671|pc|chr22:25184976:25186451:+	0	+
#Deleted in new
chr22	25212741	25212840	ENSG00000236641.1|Z99916.1|lncRNA|chr22:25212741:25212840:+	0	+
#Deleted in new
chr22	25251522	25252602	ENSG00000279298.1|Z99916.3|lncRNA|chr22:25251522:25252602:-	0	-
#Duplicated in new
chr22	25357254	25357806	ENSG00000100068.11|LRP5L|pc|chr22:25357254:25357806:-	0	-
#Deleted in new
chr22	25361208	25361319	ENSG00000100068.11|LRP5L|pc|chr22:25361208:25361319:-	0	-
#Deleted in new
chr2	22536478	22536525	ENSG00000233587.1|LINC01884|lncRNA|chr2:22536478:22536525:+	0	+
#Deleted in new
chr22	25434323	25435070	ENSG00000272942.1|AL022324.3|lncRNA|chr22:25434323:25435070:-	0	-
#Deleted in new
chr22	25436311	25436915	ENSG00000272798.1|AL008721.1|lncRNA|chr22:25436311:25436915:+	0	+
#Partially deleted in new
chr22	25476217	25479971	ENSG00000272977.1|AL008721.2|lncRNA|chr22:25476217:25479971:+	0	+
#Deleted in new
chr22	25580240	25580584	ENSG00000237387.1|AL022329.2|lncRNA|chr22:25580240:25580584:-	0	-
#Deleted in new
chr22	25581066	25581382	ENSG00000237387.1|AL022329.2|lncRNA|chr22:25581066:25581382:-	0	-
#Deleted in new
chr22	25684518	25684568	ENSG00000100077.14|GRK3|pc|chr22:25684518:25684568:+	0	+
#Deleted in new
chr2	225761558	225762112	ENSG00000279015.1|AC016717.3|lncRNA|chr2:225761558:225762112:+	0	+
#Deleted in new
chr22	25883395	25883700	ENSG00000231933.7|Z98949.1|lncRNA|chr22:25883395:25883700:-	0	-
#Deleted in new
chr22	25884715	25884883	ENSG00000231933.7|Z98949.1|lncRNA|chr22:25884715:25884883:-	0	-
#Partially deleted in new
chr22	25895337	25895498	ENSG00000231933.7|Z98949.1|lncRNA|chr22:25895337:25895498:-	0	-
#Deleted in new
chr22	25896272	25896744	ENSG00000231933.7|Z98949.1|lncRNA|chr22:25896272:25896744:-	0	-
#Deleted in new
chr22	25896272	25896847	ENSG00000231933.7|Z98949.1|lncRNA|chr22:25896272:25896847:-	0	-
#Deleted in new
chr22	25896275	25896756	ENSG00000231933.7|Z98949.1|lncRNA|chr22:25896275:25896756:-	0	-
#Deleted in new
chr22	25959073	25959323	ENSG00000232464.1|Z98949.3|lncRNA|chr22:25959073:25959323:-	0	-
#Deleted in new
chr22	25983304	25983526	ENSG00000232464.1|Z98949.3|lncRNA|chr22:25983304:25983526:-	0	-
#Deleted in new
chr22	26242751	26242855	ENSG00000224192.2|AL080273.1|lncRNA|chr22:26242751:26242855:-	0	-
#Deleted in new
chr22	26244336	26244495	ENSG00000224192.2|AL080273.1|lncRNA|chr22:26244336:26244495:-	0	-
#Deleted in new
chr22	26253973	26254092	ENSG00000224192.2|AL080273.1|lncRNA|chr22:26253973:26254092:-	0	-
#Deleted in new
chr22	26451479	26451821	ENSG00000100099.20|HPS4|pc|chr22:26451479:26451821:-	0	-
#Partially deleted in new
chr22	26451479	26453404	ENSG00000100099.20|HPS4|pc|chr22:26451479:26453404:-	0	-
#Partially deleted in new
chr22	26452082	26453404	ENSG00000100099.20|HPS4|pc|chr22:26452082:26453404:-	0	-
#Deleted in new
chr22	26452748	26452892	ENSG00000100099.20|HPS4|pc|chr22:26452748:26452892:-	0	-
#Partially deleted in new
chr22	26466225	26468623	ENSG00000100099.20|HPS4|pc|chr22:26466225:26468623:-	0	-
#Deleted in new
chr22	26471212	26471288	ENSG00000100099.20|HPS4|pc|chr22:26471212:26471288:-	0	-
#Deleted in new
chr22	26471212	26471388	ENSG00000100099.20|HPS4|pc|chr22:26471212:26471388:-	0	-
#Partially deleted in new
chr22	26475369	26477136	ENSG00000100099.20|HPS4|pc|chr22:26475369:26477136:-	0	-
#Deleted in new
chr22	26511118	26511153	ENSG00000100109.16|TFIP11|pc|chr22:26511118:26511153:-	0	-
#Deleted in new
chr22	26511118	26511195	ENSG00000100109.16|TFIP11|pc|chr22:26511118:26511195:-	0	-
#Deleted in new
chr22	26511118	26511317	ENSG00000100109.16|TFIP11|pc|chr22:26511118:26511317:-	0	-
#Deleted in new
chr22	26511688	26512175	ENSG00000100109.16|TFIP11|pc|chr22:26511688:26512175:-	0	-
#Deleted in new
chr22	26512098	26512175	ENSG00000100109.16|TFIP11|pc|chr22:26512098:26512175:-	0	-
#Deleted in new
chr22	26512098	26512377	ENSG00000100109.16|TFIP11|pc|chr22:26512098:26512377:-	0	-
#Deleted in new
chr22	26512393	26512460	ENSG00000100109.16|TFIP11|pc|chr22:26512393:26512460:-	0	-
#Deleted in new
chr22	26512393	26512478	ENSG00000100109.16|TFIP11|pc|chr22:26512393:26512478:-	0	-
#Deleted in new
chr22	26512393	26512489	ENSG00000100109.16|TFIP11|pc|chr22:26512393:26512489:-	0	-
#Deleted in new
chr22	26512393	26512495	ENSG00000100109.16|TFIP11|pc|chr22:26512393:26512495:-	0	-
#Deleted in new
chr22	26512393	26512496	ENSG00000100109.16|TFIP11|pc|chr22:26512393:26512496:-	0	-
#Deleted in new
chr22	26512393	26512499	ENSG00000100109.16|TFIP11|pc|chr22:26512393:26512499:-	0	-
#Deleted in new
chr22	26512393	26512505	ENSG00000100109.16|TFIP11|pc|chr22:26512393:26512505:-	0	-
#Deleted in new
chr22	26512536	26514568	ENSG00000261188.1|Z95115.1|lncRNA|chr22:26512536:26514568:+	0	+
#Deleted in new
chr22	26512554	26513034	ENSG00000261188.1|Z95115.1|lncRNA|chr22:26512554:26513034:+	0	+
#Deleted in new
chr22	26513411	26513912	ENSG00000261188.1|Z95115.1|lncRNA|chr22:26513411:26513912:+	0	+
#Partially deleted in new
chr22	26521982	26526267	ENSG00000128294.15|TPST2|pc|chr22:26521982:26526267:-	0	-
#Deleted in new
chr22	26543107	26543277	ENSG00000128294.15|TPST2|pc|chr22:26543107:26543277:-	0	-
#Deleted in new
chr22	26547499	26547618	ENSG00000128294.15|TPST2|pc|chr22:26547499:26547618:-	0	-
#Deleted in new
chr22	26565223	26565368	ENSG00000128294.15|TPST2|pc|chr22:26565223:26565368:-	0	-
#Deleted in new
chr22	26565446	26565726	ENSG00000128294.15|TPST2|pc|chr22:26565446:26565726:-	0	-
#Deleted in new
chr22	26596626	26596717	ENSG00000128294.15|TPST2|pc|chr22:26596626:26596717:-	0	-
#Deleted in new
chr22	26646427	26646959	ENSG00000225783.6|MIAT|lncRNA|chr22:26646427:26646959:+	0	+
#Deleted in new
chr22	26646639	26646959	ENSG00000225783.6|MIAT|lncRNA|chr22:26646639:26646959:+	0	+
#Deleted in new
chr22	26647210	26647340	ENSG00000225783.6|MIAT|lncRNA|chr22:26647210:26647340:+	0	+
#Deleted in new
chr22	26647223	26647340	ENSG00000225783.6|MIAT|lncRNA|chr22:26647223:26647340:+	0	+
#Deleted in new
chr22	26647227	26647340	ENSG00000225783.6|MIAT|lncRNA|chr22:26647227:26647340:+	0	+
#Deleted in new
chr22	26656031	26656154	ENSG00000225783.6|MIAT|lncRNA|chr22:26656031:26656154:+	0	+
#Deleted in new
chr22	26663315	26663398	ENSG00000225783.6|MIAT|lncRNA|chr22:26663315:26663398:+	0	+
#Deleted in new
chr22	26663315	26663509	ENSG00000225783.6|MIAT|lncRNA|chr22:26663315:26663509:+	0	+
#Deleted in new
chr22	26693680	26693836	ENSG00000244625.5|MIATNB|lncRNA|chr22:26693680:26693836:+	0	+
#Deleted in new
chr22	26711829	26712008	ENSG00000244625.5|MIATNB|lncRNA|chr22:26711829:26712008:+	0	+
#Deleted in new
chr22	26717368	26717459	ENSG00000244625.5|MIATNB|lncRNA|chr22:26717368:26717459:+	0	+
#Deleted in new
chr22	26718139	26718231	ENSG00000244625.5|MIATNB|lncRNA|chr22:26718139:26718231:+	0	+
#Deleted in new
chr22	26718139	26718392	ENSG00000244625.5|MIATNB|lncRNA|chr22:26718139:26718392:+	0	+
#Deleted in new
chr22	26726643	26726794	ENSG00000244625.5|MIATNB|lncRNA|chr22:26726643:26726794:+	0	+
#Deleted in new
chr22	26734272	26734455	ENSG00000244625.5|MIATNB|lncRNA|chr22:26734272:26734455:+	0	+
#Deleted in new
chr22	26742738	26742838	ENSG00000244625.5|MIATNB|lncRNA|chr22:26742738:26742838:+	0	+
#Deleted in new
chr22	26774155	26774217	ENSG00000244625.5|MIATNB|lncRNA|chr22:26774155:26774217:+	0	+
#Deleted in new
chr22	26776826	26776848	ENSG00000244625.5|MIATNB|lncRNA|chr22:26776826:26776848:+	0	+
#Deleted in new
chr22	26776826	26776882	ENSG00000244625.5|MIATNB|lncRNA|chr22:26776826:26776882:+	0	+
#Deleted in new
chr22	26776826	26776954	ENSG00000244625.5|MIATNB|lncRNA|chr22:26776826:26776954:+	0	+
#Deleted in new
chr22	26778455	26778585	ENSG00000244625.5|MIATNB|lncRNA|chr22:26778455:26778585:+	0	+
#Deleted in new
chr22	26778455	26778635	ENSG00000244625.5|MIATNB|lncRNA|chr22:26778455:26778635:+	0	+
#Deleted in new
chr2	226807485	226807625	ENSG00000272622.1|AC010735.2|lncRNA|chr2:226807485:226807625:+	0	+
#Deleted in new
chr2	226808388	226808637	ENSG00000272622.1|AC010735.2|lncRNA|chr2:226808388:226808637:+	0	+
#Deleted in new
chr2	226810911	226811029	ENSG00000272622.1|AC010735.2|lncRNA|chr2:226810911:226811029:+	0	+
#Deleted in new
chr2	226835580	226835663	ENSG00000144468.16|RHBDD1|pc|chr2:226835580:226835663:+	0	+
#Deleted in new
chr22	26858633	26861022	ENSG00000223704.1|LINC01422|lncRNA|chr22:26858633:26861022:+	0	+
#Deleted in new
chr22	26861981	26862105	ENSG00000223704.1|LINC01422|lncRNA|chr22:26861981:26862105:+	0	+
#Partially deleted in new
chr22	26862256	26865786	ENSG00000223704.1|LINC01422|lncRNA|chr22:26862256:26865786:+	0	+
#Deleted in new
chr22	26907934	26908113	ENSG00000235271.5|LINC01422|lncRNA|chr22:26907934:26908113:+	0	+
#Partially deleted in new
chr22	27040196	27041494	ENSG00000279914.1|AL008638.5|lncRNA|chr22:27040196:27041494:+	0	+
#Deleted in new
chr22	27048143	27050116	ENSG00000236858.1|AL008638.2|lncRNA|chr22:27048143:27050116:-	0	-
#Deleted in new
chr22	27143477	27143529	ENSG00000231405.1|AL008638.1|lncRNA|chr22:27143477:27143529:+	0	+
#Deleted in new
chr22	27159457	27159878	ENSG00000231405.1|AL008638.1|lncRNA|chr22:27159457:27159878:+	0	+
#Deleted in new
chr22	27204968	27205126	ENSG00000238195.1|AL021153.1|lncRNA|chr22:27204968:27205126:+	0	+
#Deleted in new
chr22	27221348	27221701	ENSG00000233521.5|LINC01638|lncRNA|chr22:27221348:27221701:-	0	-
#Partially deleted in new
chr22	27223296	27223634	ENSG00000233521.5|LINC01638|lncRNA|chr22:27223296:27223634:-	0	-
#Deleted in new
chr22	27224229	27224308	ENSG00000233521.5|LINC01638|lncRNA|chr22:27224229:27224308:-	0	-
#Deleted in new
chr22	27224522	27224657	ENSG00000233521.5|LINC01638|lncRNA|chr22:27224522:27224657:-	0	-
#Deleted in new
chr22	27224522	27224727	ENSG00000233521.5|LINC01638|lncRNA|chr22:27224522:27224727:-	0	-
#Partially deleted in new
chr2	227227769	227227892	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227227769:227227892:-	0	-
#Deleted in new
chr2	227259177	227259198	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227259177:227259198:-	0	-
#Deleted in new
chr2	227259177	227259283	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227259177:227259283:-	0	-
#Deleted in new
chr2	227264668	227265173	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227264668:227265173:-	0	-
#Deleted in new
chr2	227264668	227265438	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227264668:227265438:-	0	-
#Deleted in new
chr2	227265874	227265935	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227265874:227265935:-	0	-
#Deleted in new
chr2	227268352	227268443	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227268352:227268443:-	0	-
#Deleted in new
chr2	227268627	227268769	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227268627:227268769:-	0	-
#Deleted in new
chr2	227268744	227268769	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227268744:227268769:-	0	-
#Deleted in new
chr22	27276239	27276344	ENSG00000233574.1|AL020994.3|lncRNA|chr22:27276239:27276344:+	0	+
#Deleted in new
chr2	227279482	227279575	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227279482:227279575:-	0	-
#Deleted in new
chr2	227279482	227279578	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227279482:227279578:-	0	-
#Deleted in new
chr22	27282453	27282567	ENSG00000233574.1|AL020994.3|lncRNA|chr22:27282453:27282567:+	0	+
#Deleted in new
chr22	27286294	27286349	ENSG00000233574.1|AL020994.3|lncRNA|chr22:27286294:27286349:+	0	+
#Deleted in new
chr2	227305459	227305655	ENSG00000236432.7|AC097662.1|lncRNA|chr2:227305459:227305655:-	0	-
#Partially deleted in new
chr22	27316803	27317456	ENSG00000226741.1|LINC02554|lncRNA|chr22:27316803:27317456:+	0	+
#Deleted in new
chr22	27331786	27331938	ENSG00000230051.1|AL020994.2|lncRNA|chr22:27331786:27331938:+	0	+
#Deleted in new
chr22	27335157	27335330	ENSG00000230051.1|AL020994.2|lncRNA|chr22:27335157:27335330:+	0	+
#Deleted in new
chr22	27336096	27336262	ENSG00000230051.1|AL020994.2|lncRNA|chr22:27336096:27336262:+	0	+
#Deleted in new
chr22	27379185	27379265	ENSG00000230051.1|AL020994.2|lncRNA|chr22:27379185:27379265:+	0	+
#Deleted in new
chr2	227381588	227381995	ENSG00000168955.3|TM4SF20|pc|chr2:227381588:227381995:-	0	-
#Deleted in new
chr22	27414461	27415205	ENSG00000280445.1|AL049536.1|lncRNA|chr22:27414461:27415205:-	0	-
#Deleted in new
chr22	27414492	27414647	ENSG00000280445.1|AL049536.1|lncRNA|chr22:27414492:27414647:-	0	-
#Deleted in new
chr22	27419413	27419713	ENSG00000280445.1|AL049536.1|lncRNA|chr22:27419413:27419713:-	0	-
#Deleted in new
chr22	27457246	27457730	ENSG00000227880.1|AL050402.1|lncRNA|chr22:27457246:27457730:-	0	-
#Deleted in new
chr22	27459774	27460060	ENSG00000227880.1|AL050402.1|lncRNA|chr22:27459774:27460060:-	0	-
#Deleted in new
chr2	227508271	227508650	ENSG00000173744.17|AGFG1|pc|chr2:227508271:227508650:+	0	+
#Deleted in new
chr2	227510720	227510864	ENSG00000173744.17|AGFG1|pc|chr2:227510720:227510864:+	0	+
#Deleted in new
chr22	27563838	27563922	ENSG00000224027.1|AL133456.1|lncRNA|chr22:27563838:27563922:-	0	-
#Deleted in new
chr22	27564006	27564433	ENSG00000224027.1|AL133456.1|lncRNA|chr22:27564006:27564433:-	0	-
#Partially deleted in new
chr2	227610089	227611656	ENSG00000042304.11|C2orf83|pc|chr2:227610089:227611656:-	0	-
#Partially deleted in new
chr2	227610090	227611656	ENSG00000042304.11|C2orf83|pc|chr2:227610090:227611656:-	0	-
#Deleted in new
chr2	227611393	227611656	ENSG00000042304.11|C2orf83|pc|chr2:227611393:227611656:-	0	-
#Deleted in new
chr2	227611650	227611656	ENSG00000042304.11|C2orf83|pc|chr2:227611650:227611656:-	0	-
#Partially deleted in new
chr2	227612939	227613034	ENSG00000042304.11|C2orf83|pc|chr2:227612939:227613034:-	0	-
#Deleted in new
chr2	227628438	227628511	ENSG00000042304.11|C2orf83|pc|chr2:227628438:227628511:-	0	-
#Deleted in new
chr22	27676558	27676887	ENSG00000227838.1|AL121885.2|lncRNA|chr22:27676558:27676887:-	0	-
#Split in new
chr2	227685209	227686169	ENSG00000135917.13|SLC19A3|pc|chr2:227685209:227686169:-	0	-
#Partially deleted in new
chr2	227685854	227686169	ENSG00000135917.13|SLC19A3|pc|chr2:227685854:227686169:-	0	-
#Deleted in new
chr22	27706693	27706816	ENSG00000227838.1|AL121885.2|lncRNA|chr22:27706693:27706816:-	0	-
#Deleted in new
chr22	27707579	27707653	ENSG00000231495.1|AL121885.3|lncRNA|chr22:27707579:27707653:+	0	+
#Deleted in new
chr2	227714448	227714612	ENSG00000135917.13|SLC19A3|pc|chr2:227714448:227714612:-	0	-
#Deleted in new
chr22	27716479	27716563	ENSG00000226169.1|AL121885.1|lncRNA|chr22:27716479:27716563:+	0	+
#Partially deleted in new
chr22	27721310	27721677	ENSG00000226169.1|AL121885.1|lncRNA|chr22:27721310:27721677:+	0	+
#Partially deleted in new
chr2	227871053	227871729	ENSG00000123977.9|DAW1|pc|chr2:227871053:227871729:+	0	+
#Deleted in new
chr2	227889512	227889573	ENSG00000123977.9|DAW1|pc|chr2:227889512:227889573:+	0	+
#Deleted in new
chr2	227912253	227912469	ENSG00000123977.9|DAW1|pc|chr2:227912253:227912469:+	0	+
#Partially deleted in new
chr22	27919471	27919966	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27919471:27919966:+	0	+
#Deleted in new
chr22	27919722	27919966	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27919722:27919966:+	0	+
#Deleted in new
chr22	27919810	27920134	ENSG00000180957.17|PITPNB|pc|chr22:27919810:27920134:-	0	-
#Deleted in new
chr22	27922017	27922087	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27922017:27922087:+	0	+
#Deleted in new
chr22	27922017	27922178	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27922017:27922178:+	0	+
#Deleted in new
chr22	27922017	27922263	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27922017:27922263:+	0	+
#Deleted in new
chr22	27924346	27924963	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27924346:27924963:+	0	+
#Deleted in new
chr22	27935150	27935230	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27935150:27935230:+	0	+
#Deleted in new
chr22	27935160	27935230	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27935160:27935230:+	0	+
#Deleted in new
chr22	27940019	27940171	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27940019:27940171:+	0	+
#Deleted in new
chr22	27994472	27994653	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27994472:27994653:+	0	+
#Deleted in new
chr22	27997410	27997423	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27997410:27997423:+	0	+
#Deleted in new
chr22	27997410	27997631	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27997410:27997631:+	0	+
#Deleted in new
chr22	27997410	27997667	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27997410:27997667:+	0	+
#Deleted in new
chr22	27997410	27997700	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27997410:27997700:+	0	+
#Deleted in new
chr22	27997410	27997739	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27997410:27997739:+	0	+
#Deleted in new
chr22	27997410	27997775	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27997410:27997775:+	0	+
#Partially deleted in new
chr22	27997410	27998838	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27997410:27998838:+	0	+
#Deleted in new
chr22	27997576	27997739	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27997576:27997739:+	0	+
#Deleted in new
chr22	27997985	27998152	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27997985:27998152:+	0	+
#Deleted in new
chr22	27999429	27999476	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27999429:27999476:+	0	+
#Deleted in new
chr22	27999429	27999657	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27999429:27999657:+	0	+
#Partially deleted in new
chr22	27999429	28000723	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27999429:28000723:+	0	+
#Partially deleted in new
chr22	27999429	28001658	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:27999429:28001658:+	0	+
#Partially deleted in new
chr22	28006528	28008581	ENSG00000235954.6|TTC28-AS1|lncRNA|chr22:28006528:28008581:+	0	+
#Deleted in new
chr2	228483260	228483498	ENSG00000232023.2|LINC01807|lncRNA|chr2:228483260:228483498:-	0	-
#Deleted in new
chr2	228488682	228488793	ENSG00000232023.2|LINC01807|lncRNA|chr2:228488682:228488793:-	0	-
#Deleted in new
chr2	228506326	228506509	ENSG00000232023.2|LINC01807|lncRNA|chr2:228506326:228506509:-	0	-
#Deleted in new
chr2	228611251	228611395	ENSG00000232023.2|LINC01807|lncRNA|chr2:228611251:228611395:-	0	-
#Deleted in new
chr2	228684284	228684580	ENSG00000228226.1|AC012070.1|lncRNA|chr2:228684284:228684580:-	0	-
#Deleted in new
chr22	28721517	28721631	ENSG00000183765.20|CHEK2|pc|chr22:28721517:28721631:-	0	-
#Deleted in new
chr22	28721599	28721631	ENSG00000183765.20|CHEK2|pc|chr22:28721599:28721631:-	0	-
#Partially deleted in new
chr22	28724564	28724923	ENSG00000183765.20|CHEK2|pc|chr22:28724564:28724923:-	0	-
#Deleted in new
chr22	28726244	28726361	ENSG00000183765.20|CHEK2|pc|chr22:28726244:28726361:-	0	-
#Deleted in new
chr22	28727979	28728122	ENSG00000183765.20|CHEK2|pc|chr22:28727979:28728122:-	0	-
#Deleted in new
chr22	28729281	28729376	ENSG00000183765.20|CHEK2|pc|chr22:28729281:28729376:-	0	-
#Deleted in new
chr22	28730419	28730501	ENSG00000183765.20|CHEK2|pc|chr22:28730419:28730501:-	0	-
#Deleted in new
chr22	28730419	28730548	ENSG00000183765.20|CHEK2|pc|chr22:28730419:28730548:-	0	-
#Deleted in new
chr22	28730455	28730548	ENSG00000183765.20|CHEK2|pc|chr22:28730455:28730548:-	0	-
#Deleted in new
chr22	28737259	28737323	ENSG00000183765.20|CHEK2|pc|chr22:28737259:28737323:-	0	-
#Deleted in new
chr22	28737884	28738038	ENSG00000183765.20|CHEK2|pc|chr22:28737884:28738038:-	0	-
#Deleted in new
chr22	28737915	28738038	ENSG00000183765.20|CHEK2|pc|chr22:28737915:28738038:-	0	-
#Deleted in new
chr22	28742678	28742728	ENSG00000100209.9|HSCB|pc|chr22:28742678:28742728:+	0	+
#Deleted in new
chr22	28742700	28742728	ENSG00000100209.9|HSCB|pc|chr22:28742700:28742728:+	0	+
#Partially deleted in new
chr22	28799959	28800133	ENSG00000100219.16|XBP1|pc|chr22:28799959:28800133:-	0	-
#Deleted in new
chr22	28801891	28801994	ENSG00000226471.6|Z93930.2|lncRNA|chr22:28801891:28801994:+	0	+
#Split in new
chr22	28814913	28815662	ENSG00000272858.1|Z93930.3|lncRNA|chr22:28814913:28815662:+	0	+
#Deleted in new
chr22	28821971	28822179	ENSG00000226471.6|Z93930.2|lncRNA|chr22:28821971:28822179:+	0	+
#Deleted in new
chr22	28821971	28822215	ENSG00000226471.6|Z93930.2|lncRNA|chr22:28821971:28822215:+	0	+
#Deleted in new
chr22	28838859	28839033	ENSG00000226471.6|Z93930.2|lncRNA|chr22:28838859:28839033:+	0	+
#Deleted in new
chr22	28844126	28844199	ENSG00000226471.6|Z93930.2|lncRNA|chr22:28844126:28844199:+	0	+
#Deleted in new
chr22	28848390	28848559	ENSG00000226471.6|Z93930.2|lncRNA|chr22:28848390:28848559:+	0	+
#Partially deleted in new
chr2	228850525	228850648	ENSG00000153823.18|PID1|pc|chr2:228850525:228850648:-	0	-
#Deleted in new
chr22	28917388	28917481	ENSG00000183579.15|ZNRF3|pc|chr22:28917388:28917481:+	0	+
#Deleted in new
chr22	29111580	29111683	ENSG00000226772.1|AL021393.1|lncRNA|chr22:29111580:29111683:-	0	-
#Deleted in new
chr22	29167043	29168333	ENSG00000183762.12|KREMEN1|pc|chr22:29167043:29168333:+	0	+
#Deleted in new
chr2	229227956	229228063	ENSG00000153823.18|PID1|pc|chr2:229227956:229228063:-	0	-
#Partially deleted in new
chr2	229231925	229232085	ENSG00000153823.18|PID1|pc|chr2:229231925:229232085:-	0	-
#Deleted in new
chr22	29261843	29262037	ENSG00000237015.1|AL031186.1|lncRNA|chr22:29261843:29262037:+	0	+
#Partially deleted in new
chr22	29295525	29296368	ENSG00000182944.17|EWSR1|pc|chr22:29295525:29296368:+	0	+
#Partially deleted in new
chr22	29314221	29314306	ENSG00000100276.9|RASL10A|pc|chr22:29314221:29314306:-	0	-
#Deleted in new
chr22	29319308	29319679	ENSG00000100276.9|RASL10A|pc|chr22:29319308:29319679:-	0	-
#Partially deleted in new
chr22	29436533	29442129	ENSG00000225465.8|RFPL1S|lncRNA|chr22:29436533:29442129:-	0	-
#Partially deleted in new
chr22	29441339	29441389	ENSG00000225465.8|RFPL1S|lncRNA|chr22:29441339:29441389:-	0	-
#Deleted in new
chr22	29472305	29472446	ENSG00000225465.8|RFPL1S|lncRNA|chr22:29472305:29472446:-	0	-
#Partially deleted in new
chr22	29505878	29508520	ENSG00000100296.13|THOC5|pc|chr22:29505878:29508520:-	0	-
#Deleted in new
chr22	29513888	29514016	ENSG00000234208.1|AC005529.1|lncRNA|chr22:29513888:29514016:-	0	-
#Deleted in new
chr22	29534537	29534931	ENSG00000100296.13|THOC5|pc|chr22:29534537:29534931:-	0	-
#Deleted in new
chr22	29545060	29545144	ENSG00000100296.13|THOC5|pc|chr22:29545060:29545144:-	0	-
#Deleted in new
chr22	29550727	29550843	ENSG00000100296.13|THOC5|pc|chr22:29550727:29550843:-	0	-
#Deleted in new
chr22	29564237	29564371	ENSG00000184117.11|NIPSNAP1|pc|chr22:29564237:29564371:-	0	-
#Deleted in new
chr2	229580153	229580344	ENSG00000187957.7|DNER|pc|chr2:229580153:229580344:-	0	-
#Partially deleted in new
chr2	229773560	229774261	ENSG00000153827.13|TRIP12|pc|chr2:229773560:229774261:-	0	-
#Deleted in new
chr22	29815171	29815289	ENSG00000100325.14|ASCC2|pc|chr22:29815171:29815289:-	0	-
#Deleted in new
chr22	29815205	29815293	ENSG00000100325.14|ASCC2|pc|chr22:29815205:29815293:-	0	-
#Deleted in new
chr22	29821891	29822075	ENSG00000100325.14|ASCC2|pc|chr22:29821891:29822075:-	0	-
#Deleted in new
chr2	229831031	229831146	ENSG00000153827.13|TRIP12|pc|chr2:229831031:229831146:-	0	-
#Deleted in new
chr22	29834085	29834550	ENSG00000100325.14|ASCC2|pc|chr22:29834085:29834550:-	0	-
#Deleted in new
chr22	29834441	29834550	ENSG00000100325.14|ASCC2|pc|chr22:29834441:29834550:-	0	-
#Deleted in new
chr22	29834488	29834550	ENSG00000100325.14|ASCC2|pc|chr22:29834488:29834550:-	0	-
#Deleted in new
chr22	29836437	29836500	ENSG00000100325.14|ASCC2|pc|chr22:29836437:29836500:-	0	-
#Deleted in new
chr2	229900736	229900858	ENSG00000153827.13|TRIP12|pc|chr2:229900736:229900858:-	0	-
#Deleted in new
chr2	229932770	229932886	ENSG00000153832.11|FBXO36|pc|chr2:229932770:229932886:+	0	+
#Deleted in new
chr2	229942727	229943261	ENSG00000231534.1|FBXO36-IT1|lncRNA|chr2:229942727:229943261:+	0	+
#Deleted in new
chr2	229945089	229945137	ENSG00000231534.1|FBXO36-IT1|lncRNA|chr2:229945089:229945137:+	0	+
#Deleted in new
chr22	29957035	29957088	ENSG00000100330.15|MTMR3|pc|chr22:29957035:29957088:+	0	+
#Partially deleted in new
chr2	229976240	229977174	ENSG00000153832.11|FBXO36|pc|chr2:229976240:229977174:+	0	+
#Deleted in new
chr22	30018616	30018729	ENSG00000227117.6|HORMAD2-AS1|lncRNA|chr22:30018616:30018729:-	0	-
#Deleted in new
chr22	30018631	30018729	ENSG00000227117.6|HORMAD2-AS1|lncRNA|chr22:30018631:30018729:-	0	-
#Deleted in new
chr22	30047624	30047911	ENSG00000227117.6|HORMAD2-AS1|lncRNA|chr22:30047624:30047911:-	0	-
#Deleted in new
chr2	230121369	230122016	ENSG00000225963.7|AC009950.1|lncRNA|chr2:230121369:230122016:+	0	+
#Deleted in new
chr2	230140067	230140146	ENSG00000225963.7|AC009950.1|lncRNA|chr2:230140067:230140146:+	0	+
#Deleted in new
chr2	230167106	230167652	ENSG00000225963.7|AC009950.1|lncRNA|chr2:230167106:230167652:+	0	+
#Partially deleted in new
chr2	230167292	230169237	ENSG00000135899.17|SP110|pc|chr2:230167292:230169237:-	0	-
#Deleted in new
chr2	230167296	230167494	ENSG00000225963.7|AC009950.1|lncRNA|chr2:230167296:230167494:+	0	+
#Deleted in new
chr2	230167296	230167652	ENSG00000225963.7|AC009950.1|lncRNA|chr2:230167296:230167652:+	0	+
#Partially deleted in new
chr2	230168917	230169237	ENSG00000135899.17|SP110|pc|chr2:230168917:230169237:-	0	-
#Partially deleted in new
chr2	230168931	230169237	ENSG00000135899.17|SP110|pc|chr2:230168931:230169237:-	0	-
#Partially deleted in new
chr2	230168935	230169237	ENSG00000135899.17|SP110|pc|chr2:230168935:230169237:-	0	-
#Deleted in new
chr2	230171478	230171616	ENSG00000135899.17|SP110|pc|chr2:230171478:230171616:-	0	-
#Partially deleted in new
chr2	230172843	230173514	ENSG00000135899.17|SP110|pc|chr2:230172843:230173514:-	0	-
#Partially deleted in new
chr2	230172859	230173561	ENSG00000225963.7|AC009950.1|lncRNA|chr2:230172859:230173561:+	0	+
#Deleted in new
chr2	230173687	230173823	ENSG00000225963.7|AC009950.1|lncRNA|chr2:230173687:230173823:+	0	+
#Deleted in new
chr2	230173687	230173988	ENSG00000225963.7|AC009950.1|lncRNA|chr2:230173687:230173988:+	0	+
#Deleted in new
chr2	230173687	230174106	ENSG00000225963.7|AC009950.1|lncRNA|chr2:230173687:230174106:+	0	+
#Deleted in new
chr2	230173687	230174223	ENSG00000225963.7|AC009950.1|lncRNA|chr2:230173687:230174223:+	0	+
#Partially deleted in new
chr2	230202932	230203363	ENSG00000135899.17|SP110|pc|chr2:230202932:230203363:-	0	-
#Deleted in new
chr2	230203109	230203279	ENSG00000079263.18|SP140|pc|chr2:230203109:230203279:+	0	+
#Deleted in new
chr2	230203623	230203693	ENSG00000079263.18|SP140|pc|chr2:230203623:230203693:+	0	+
#Duplicated in new
chr2	230212346	230212430	ENSG00000135899.17|SP110|pc|chr2:230212346:230212430:-	0	-
#Duplicated in new
chr2	230212348	230212430	ENSG00000135899.17|SP110|pc|chr2:230212348:230212430:-	0	-
#Deleted in new
chr2	230221704	230221784	ENSG00000135899.17|SP110|pc|chr2:230221704:230221784:-	0	-
#Deleted in new
chr2	230230410	230230528	ENSG00000079263.18|SP140|pc|chr2:230230410:230230528:+	0	+
#Deleted in new
chr2	230230413	230230528	ENSG00000079263.18|SP140|pc|chr2:230230413:230230528:+	0	+
#Deleted in new
chr2	230234937	230234966	ENSG00000079263.18|SP140|pc|chr2:230234937:230234966:+	0	+
#Deleted in new
chr2	230234937	230235075	ENSG00000079263.18|SP140|pc|chr2:230234937:230235075:+	0	+
#Deleted in new
chr2	230243730	230243811	ENSG00000079263.18|SP140|pc|chr2:230243730:230243811:+	0	+
#Deleted in new
chr2	230244987	230245071	ENSG00000079263.18|SP140|pc|chr2:230244987:230245071:+	0	+
#Deleted in new
chr2	230244987	230245080	ENSG00000079263.18|SP140|pc|chr2:230244987:230245080:+	0	+
#Deleted in new
chr2	230245862	230245940	ENSG00000079263.18|SP140|pc|chr2:230245862:230245940:+	0	+
#Deleted in new
chr2	230247915	230248065	ENSG00000079263.18|SP140|pc|chr2:230247915:230248065:+	0	+
#Deleted in new
chr2	230248884	230248968	ENSG00000079263.18|SP140|pc|chr2:230248884:230248968:+	0	+
#Deleted in new
chr2	230253315	230253417	ENSG00000079263.18|SP140|pc|chr2:230253315:230253417:+	0	+
#Deleted in new
chr2	230255451	230255532	ENSG00000079263.18|SP140|pc|chr2:230255451:230255532:+	0	+
#Deleted in new
chr2	23027108	23027409	ENSG00000232451.1|AC018467.1|lncRNA|chr2:23027108:23027409:-	0	-
#Partially deleted in new
chr22	30275214	30276951	ENSG00000279699.1|AC004264.2|lncRNA|chr22:30275214:30276951:-	0	-
#Partially deleted in new
chr2	23027866	23027937	ENSG00000232451.1|AC018467.1|lncRNA|chr2:23027866:23027937:-	0	-
#Deleted in new
chr22	30300470	30300661	ENSG00000099992.15|TBC1D10A|pc|chr22:30300470:30300661:-	0	-
#Partially deleted in new
chr2	230312585	230313070	ENSG00000079263.18|SP140|pc|chr2:230312585:230313070:+	0	+
#Partially deleted in new
chr2	230312585	230313212	ENSG00000079263.18|SP140|pc|chr2:230312585:230313212:+	0	+
#Partially deleted in new
chr2	230312585	230313214	ENSG00000079263.18|SP140|pc|chr2:230312585:230313214:+	0	+
#Partially deleted in new
chr2	230312585	230313215	ENSG00000079263.18|SP140|pc|chr2:230312585:230313215:+	0	+
#Deleted in new
chr2	230327183	230327301	ENSG00000185404.16|SP140L|pc|chr2:230327183:230327301:+	0	+
#Deleted in new
chr2	230327269	230327301	ENSG00000185404.16|SP140L|pc|chr2:230327269:230327301:+	0	+
#Deleted in new
chr2	230328756	230328831	ENSG00000185404.16|SP140L|pc|chr2:230328756:230328831:+	0	+
#Deleted in new
chr2	230342069	230342173	ENSG00000185404.16|SP140L|pc|chr2:230342069:230342173:+	0	+
#Partially deleted in new
chr22	30377510	30378142	ENSG00000099999.14|RNF215|pc|chr22:30377510:30378142:-	0	-
#Deleted in new
chr22	30377819	30378142	ENSG00000099999.14|RNF215|pc|chr22:30377819:30378142:-	0	-
#Deleted in new
chr22	30377845	30378142	ENSG00000099999.14|RNF215|pc|chr22:30377845:30378142:-	0	-
#Deleted in new
chr22	30388154	30388279	ENSG00000099999.14|RNF215|pc|chr22:30388154:30388279:-	0	-
#Partially deleted in new
chr2	230402797	230403730	ENSG00000185404.16|SP140L|pc|chr2:230402797:230403730:+	0	+
#Partially deleted in new
chr2	230402797	230403732	ENSG00000185404.16|SP140L|pc|chr2:230402797:230403732:+	0	+
#Deleted in new
chr2	230410699	230412529	ENSG00000279964.1|AC009949.1|lncRNA|chr2:230410699:230412529:-	0	-
#Deleted in new
chr2	230415941	230416328	ENSG00000067066.16|SP100|pc|chr2:230415941:230416328:+	0	+
#Deleted in new
chr2	230416155	230416328	ENSG00000067066.16|SP100|pc|chr2:230416155:230416328:+	0	+
#Deleted in new
chr2	230416220	230416328	ENSG00000067066.16|SP100|pc|chr2:230416220:230416328:+	0	+
#Deleted in new
chr2	230416239	230416328	ENSG00000067066.16|SP100|pc|chr2:230416239:230416328:+	0	+
#Deleted in new
chr2	230416246	230416328	ENSG00000067066.16|SP100|pc|chr2:230416246:230416328:+	0	+
#Deleted in new
chr2	230416265	230416328	ENSG00000067066.16|SP100|pc|chr2:230416265:230416328:+	0	+
#Deleted in new
chr2	230416755	230416881	ENSG00000067066.16|SP100|pc|chr2:230416755:230416881:+	0	+
#Deleted in new
chr2	230417590	230417665	ENSG00000067066.16|SP100|pc|chr2:230417590:230417665:+	0	+
#Deleted in new
chr2	230440475	230440557	ENSG00000067066.16|SP100|pc|chr2:230440475:230440557:+	0	+
#Deleted in new
chr22	30447958	30449244	ENSG00000100012.11|SEC14L3|pc|chr22:30447958:30449244:-	0	-
#Partially deleted in new
chr2	230467119	230467206	ENSG00000067066.16|SP100|pc|chr2:230467119:230467206:+	0	+
#Partially deleted in new
chr2	230467119	230467215	ENSG00000067066.16|SP100|pc|chr2:230467119:230467215:+	0	+
#Deleted in new
chr22	30471159	30471207	ENSG00000100012.11|SEC14L3|pc|chr22:30471159:30471207:-	0	-
#Deleted in new
chr22	30471159	30471277	ENSG00000100012.11|SEC14L3|pc|chr22:30471159:30471277:-	0	-
#Deleted in new
chr22	30478629	30478996	ENSG00000181123.8|AC004832.1|lncRNA|chr22:30478629:30478996:+	0	+
#Deleted in new
chr22	30483127	30483255	ENSG00000181123.8|AC004832.1|lncRNA|chr22:30483127:30483255:+	0	+
#Deleted in new
chr22	30483138	30483255	ENSG00000181123.8|AC004832.1|lncRNA|chr22:30483138:30483255:+	0	+
#Deleted in new
chr22	30483353	30483839	ENSG00000181123.8|AC004832.1|lncRNA|chr22:30483353:30483839:+	0	+
#Deleted in new
chr22	30483412	30483839	ENSG00000181123.8|AC004832.1|lncRNA|chr22:30483412:30483839:+	0	+
#Deleted in new
chr22	30483777	30483839	ENSG00000181123.8|AC004832.1|lncRNA|chr22:30483777:30483839:+	0	+
#Deleted in new
chr2	230493791	230493911	ENSG00000067066.16|SP100|pc|chr2:230493791:230493911:+	0	+
#Deleted in new
chr2	230494415	230494460	ENSG00000067066.16|SP100|pc|chr2:230494415:230494460:+	0	+
#Split in new
chr2	230508145	230511166	ENSG00000067066.16|SP100|pc|chr2:230508145:230511166:+	0	+
#Deleted in new
chr2	230520593	230520673	ENSG00000235419.5|AC010149.1|lncRNA|chr2:230520593:230520673:-	0	-
#Partially deleted in new
chr22	30522798	30525109	ENSG00000214491.8|SEC14L6|pc|chr22:30522798:30525109:-	0	-
#Partially deleted in new
chr22	30524645	30525109	ENSG00000214491.8|SEC14L6|pc|chr22:30524645:30525109:-	0	-
#Split in new
chr2	230537641	230539382	ENSG00000067066.16|SP100|pc|chr2:230537641:230539382:+	0	+
#Deleted in new
chr2	230538287	230538404	ENSG00000235419.5|AC010149.1|lncRNA|chr2:230538287:230538404:-	0	-
#Partially deleted in new
chr2	230542835	230544090	ENSG00000067066.16|SP100|pc|chr2:230542835:230544090:+	0	+
#Deleted in new
chr2	230551047	230551101	ENSG00000235419.5|AC010149.1|lncRNA|chr2:230551047:230551101:-	0	-
#Deleted in new
chr22	30558259	30558388	ENSG00000128242.12|GAL3ST1|pc|chr22:30558259:30558388:-	0	-
#Deleted in new
chr22	30558278	30558388	ENSG00000128242.12|GAL3ST1|pc|chr22:30558278:30558388:-	0	-
#Deleted in new
chr22	30563229	30563278	ENSG00000128242.12|GAL3ST1|pc|chr22:30563229:30563278:-	0	-
#Deleted in new
chr22	30566113	30566161	ENSG00000128242.12|GAL3ST1|pc|chr22:30566113:30566161:-	0	-
#Deleted in new
chr2	230570639	230570715	ENSG00000235419.5|AC010149.1|lncRNA|chr2:230570639:230570715:-	0	-
#Deleted in new
chr22	30572686	30572830	ENSG00000128242.12|GAL3ST1|pc|chr22:30572686:30572830:-	0	-
#Deleted in new
chr22	30572686	30572834	ENSG00000128242.12|GAL3ST1|pc|chr22:30572686:30572834:-	0	-
#Deleted in new
chr22	30572686	30572858	ENSG00000128242.12|GAL3ST1|pc|chr22:30572686:30572858:-	0	-
#Deleted in new
chr22	30572686	30572868	ENSG00000128242.12|GAL3ST1|pc|chr22:30572686:30572868:-	0	-
#Deleted in new
chr22	30572686	30572869	ENSG00000128242.12|GAL3ST1|pc|chr22:30572686:30572869:-	0	-
#Deleted in new
chr22	30572802	30572864	ENSG00000128242.12|GAL3ST1|pc|chr22:30572802:30572864:-	0	-
#Deleted in new
chr22	30572802	30572869	ENSG00000128242.12|GAL3ST1|pc|chr22:30572802:30572869:-	0	-
#Deleted in new
chr2	230578126	230578196	ENSG00000235419.5|AC010149.1|lncRNA|chr2:230578126:230578196:-	0	-
#Deleted in new
chr2	230579900	230579933	ENSG00000235419.5|AC010149.1|lncRNA|chr2:230579900:230579933:-	0	-
#Deleted in new
chr2	230579904	230580006	ENSG00000235419.5|AC010149.1|lncRNA|chr2:230579904:230580006:-	0	-
#Deleted in new
chr2	2305938	2306155	ENSG00000186487.17|MYT1L|pc|chr2:2305938:2306155:-	0	-
#Deleted in new
chr22	30598308	30598363	ENSG00000223831.1|AC005006.1|lncRNA|chr22:30598308:30598363:+	0	+
#Deleted in new
chr22	30601817	30601915	ENSG00000223831.1|AC005006.1|lncRNA|chr22:30601817:30601915:+	0	+
#Deleted in new
chr22	30605413	30605517	ENSG00000100029.17|PES1|pc|chr22:30605413:30605517:-	0	-
#Deleted in new
chr22	30605460	30605517	ENSG00000100029.17|PES1|pc|chr22:30605460:30605517:-	0	-
#Deleted in new
chr22	30606591	30606687	ENSG00000223831.1|AC005006.1|lncRNA|chr22:30606591:30606687:+	0	+
#Deleted in new
chr22	30649159	30649253	ENSG00000100036.12|SLC35E4|pc|chr22:30649159:30649253:+	0	+
#Deleted in new
chr22	30652050	30652297	ENSG00000167065.13|DUSP18|pc|chr22:30652050:30652297:-	0	-
#Deleted in new
chr22	30652095	30652297	ENSG00000167065.13|DUSP18|pc|chr22:30652095:30652297:-	0	-
#Deleted in new
chr22	30664954	30665121	ENSG00000167065.13|DUSP18|pc|chr22:30664954:30665121:-	0	-
#Deleted in new
chr22	30665492	30665559	ENSG00000100036.12|SLC35E4|pc|chr22:30665492:30665559:+	0	+
#Deleted in new
chr22	30666806	30666938	ENSG00000167065.13|DUSP18|pc|chr22:30666806:30666938:-	0	-
#Deleted in new
chr22	30693781	30694072	ENSG00000184792.15|OSBP2|pc|chr22:30693781:30694072:+	0	+
#Deleted in new
chr22	30694075	30694344	ENSG00000184792.15|OSBP2|pc|chr22:30694075:30694344:+	0	+
#Deleted in new
chr22	30694205	30694344	ENSG00000184792.15|OSBP2|pc|chr22:30694205:30694344:+	0	+
#Deleted in new
chr22	30694207	30694344	ENSG00000184792.15|OSBP2|pc|chr22:30694207:30694344:+	0	+
#Deleted in new
chr2	230700322	230700529	ENSG00000226125.1|LINC01907|lncRNA|chr2:230700322:230700529:-	0	-
#Deleted in new
chr22	30773122	30773245	ENSG00000184792.15|OSBP2|pc|chr22:30773122:30773245:+	0	+
#Deleted in new
chr22	30842652	30842710	ENSG00000184792.15|OSBP2|pc|chr22:30842652:30842710:+	0	+
#Deleted in new
chr22	30844482	30844687	ENSG00000184792.15|OSBP2|pc|chr22:30844482:30844687:+	0	+
#Deleted in new
chr22	30872308	30872523	ENSG00000184792.15|OSBP2|pc|chr22:30872308:30872523:+	0	+
#Deleted in new
chr2	230887380	230887738	ENSG00000232520.1|AC012507.2|lncRNA|chr2:230887380:230887738:+	0	+
#Deleted in new
chr2	23090746	23090837	ENSG00000232451.1|AC018467.1|lncRNA|chr2:23090746:23090837:-	0	-
#Deleted in new
chr2	23090746	23090848	ENSG00000232451.1|AC018467.1|lncRNA|chr2:23090746:23090848:-	0	-
#Deleted in new
chr22	30922307	30922515	ENSG00000235989.3|MORC2-AS1|lncRNA|chr22:30922307:30922515:+	0	+
#Deleted in new
chr22	30922344	30922515	ENSG00000235989.3|MORC2-AS1|lncRNA|chr22:30922344:30922515:+	0	+
#Deleted in new
chr22	30922409	30922515	ENSG00000235989.3|MORC2-AS1|lncRNA|chr22:30922409:30922515:+	0	+
#Deleted in new
chr22	30922448	30922515	ENSG00000235989.3|MORC2-AS1|lncRNA|chr22:30922448:30922515:+	0	+
#Deleted in new
chr2	230929582	230929919	ENSG00000283164.1|AC012507.4|lncRNA|chr2:230929582:230929919:+	0	+
#Deleted in new
chr22	30929876	30929995	ENSG00000235989.3|MORC2-AS1|lncRNA|chr22:30929876:30929995:+	0	+
#Deleted in new
chr2	230992333	230992402	ENSG00000238062.5|SPATA3-AS1|lncRNA|chr2:230992333:230992402:-	0	-
#Deleted in new
chr2	230999568	230999810	ENSG00000173699.15|SPATA3|pc|chr2:230999568:230999810:+	0	+
#Deleted in new
chr2	231004038	231004118	ENSG00000173699.15|SPATA3|pc|chr2:231004038:231004118:+	0	+
#Deleted in new
chr2	231012589	231012697	ENSG00000173699.15|SPATA3|pc|chr2:231012589:231012697:+	0	+
#Deleted in new
chr2	231013873	231014212	ENSG00000173699.15|SPATA3|pc|chr2:231013873:231014212:+	0	+
#Deleted in new
chr2	231021612	231021733	ENSG00000173699.15|SPATA3|pc|chr2:231021612:231021733:+	0	+
#Deleted in new
chr2	231024978	231025019	ENSG00000173699.15|SPATA3|pc|chr2:231024978:231025019:+	0	+
#Deleted in new
chr2	231024978	231025055	ENSG00000173699.15|SPATA3|pc|chr2:231024978:231025055:+	0	+
#Partially deleted in new
chr22	31051629	31068327	ENSG00000278920.1|AC005005.4|lncRNA|chr22:31051629:31068327:+	0	+
#Deleted in new
chr22	31064104	31064187	ENSG00000183963.18|SMTN|pc|chr22:31064104:31064187:+	0	+
#Deleted in new
chr22	31064117	31064187	ENSG00000183963.18|SMTN|pc|chr22:31064117:31064187:+	0	+
#Deleted in new
chr22	31087082	31087200	ENSG00000183963.18|SMTN|pc|chr22:31087082:31087200:+	0	+
#Deleted in new
chr22	31182968	31183066	ENSG00000138942.15|RNF185|pc|chr22:31182968:31183066:+	0	+
#Deleted in new
chr2	231288659	231288721	ENSG00000135931.17|ARMC9|pc|chr2:231288659:231288721:+	0	+
#Partially deleted in new
chr2	231293819	231296253	ENSG00000135931.17|ARMC9|pc|chr2:231293819:231296253:+	0	+
#Partially deleted in new
chr2	231370573	231370710	ENSG00000135931.17|ARMC9|pc|chr2:231370573:231370710:+	0	+
#Partially deleted in new
chr2	231371512	231373895	ENSG00000135931.17|ARMC9|pc|chr2:231371512:231373895:+	0	+
#Partially deleted in new
chr2	231371512	231374837	ENSG00000135931.17|ARMC9|pc|chr2:231371512:231374837:+	0	+
#Deleted in new
chr22	31421307	31421399	ENSG00000185721.12|DRG1|pc|chr22:31421307:31421399:+	0	+
#Deleted in new
chr22	31446937	31447008	ENSG00000184708.17|EIF4ENIF1|pc|chr22:31446937:31447008:-	0	-
#Deleted in new
chr2	231452380	231452810	ENSG00000233538.1|AC017104.3|lncRNA|chr2:231452380:231452810:+	0	+
#Deleted in new
chr2	231453083	231453153	ENSG00000233538.1|AC017104.3|lncRNA|chr2:231453083:231453153:+	0	+
#Split in new
chr2	231453530	231455267	ENSG00000115053.15|NCL|pc|chr2:231453530:231455267:-	0	-
#Duplicated in new
chr2	231454907	231455267	ENSG00000115053.15|NCL|pc|chr2:231454907:231455267:-	0	-
#Deleted in new
chr22	31461663	31461803	ENSG00000240591.1|AL096701.3|lncRNA|chr22:31461663:31461803:+	0	+
#Deleted in new
chr2	231463585	231463693	ENSG00000115053.15|NCL|pc|chr2:231463585:231463693:-	0	-
#Deleted in new
chr2	231482683	231483641	ENSG00000115053.15|NCL|pc|chr2:231482683:231483641:-	0	-
#Deleted in new
chr22	31495952	31496108	ENSG00000184708.17|EIF4ENIF1|pc|chr22:31495952:31496108:-	0	-
#Partially deleted in new
chr22	31496138	31496637	ENSG00000198089.15|SFI1|pc|chr22:31496138:31496637:+	0	+
#Deleted in new
chr22	31497247	31497348	ENSG00000198089.15|SFI1|pc|chr22:31497247:31497348:+	0	+
#Partially deleted in new
chr2	231508425	231509343	ENSG00000181798.2|LINC00471|lncRNA|chr2:231508425:231509343:-	0	-
#Deleted in new
chr2	231514081	231514339	ENSG00000181798.2|LINC00471|lncRNA|chr2:231514081:231514339:-	0	-
#Deleted in new
chr22	31530591	31530634	ENSG00000185721.12|DRG1|pc|chr22:31530591:31530634:+	0	+
#Deleted in new
chr22	31530591	31530784	ENSG00000198089.15|SFI1|pc|chr22:31530591:31530784:+	0	+
#Deleted in new
chr22	31587327	31587912	ENSG00000198089.15|SFI1|pc|chr22:31587327:31587912:+	0	+
#Partially deleted in new
chr22	31611998	31612442	ENSG00000198089.15|SFI1|pc|chr22:31611998:31612442:+	0	+
#Deleted in new
chr22	31629701	31630006	ENSG00000241878.11|PISD|pc|chr22:31629701:31630006:-	0	-
#Deleted in new
chr22	31629775	31629884	ENSG00000241878.11|PISD|pc|chr22:31629775:31629884:-	0	-
#Deleted in new
chr22	31676255	31677018	ENSG00000183530.13|PRR14L|pc|chr22:31676255:31677018:-	0	-
#Partially deleted in new
chr2	231809845	231812352	ENSG00000261096.1|AC073476.3|lncRNA|chr2:231809845:231812352:+	0	+
#Partially deleted in new
chr22	31815415	31815988	ENSG00000100150.16|DEPDC5|pc|chr22:31815415:31815988:+	0	+
#Partially deleted in new
chr22	31937915	31938417	ENSG00000128254.13|C22orf24|lncRNA|chr22:31937915:31938417:-	0	-
#Partially deleted in new
chr22	31937988	31938115	ENSG00000128254.13|C22orf24|lncRNA|chr22:31937988:31938115:-	0	-
#Partially deleted in new
chr22	31937988	31938454	ENSG00000128254.13|C22orf24|lncRNA|chr22:31937988:31938454:-	0	-
#Deleted in new
chr22	31950307	31950422	ENSG00000128245.14|YWHAH|pc|chr22:31950307:31950422:+	0	+
#Deleted in new
chr22	31970822	31970912	ENSG00000230866.1|LINC02558|lncRNA|chr22:31970822:31970912:+	0	+
#Deleted in new
chr22	31970860	31970912	ENSG00000230866.1|LINC02558|lncRNA|chr22:31970860:31970912:+	0	+
#Deleted in new
chr22	31972575	31972732	ENSG00000230866.1|LINC02558|lncRNA|chr22:31972575:31972732:+	0	+
#Partially deleted in new
chr22	31973386	31973474	ENSG00000230866.1|LINC02558|lncRNA|chr22:31973386:31973474:+	0	+
#Partially deleted in new
chr22	31973386	31973475	ENSG00000230866.1|LINC02558|lncRNA|chr22:31973386:31973475:+	0	+
#Deleted in new
chr2	231978487	231978778	ENSG00000227033.1|AC019130.1|lncRNA|chr2:231978487:231978778:-	0	-
#Deleted in new
chr22	32059169	32059344	ENSG00000100170.9|SLC5A1|pc|chr22:32059169:32059344:+	0	+
#Deleted in new
chr22	32141266	32141339	ENSG00000239674.2|Z83839.2|lncRNA|chr22:32141266:32141339:+	0	+
#Deleted in new
chr22	32143071	32143272	ENSG00000239674.2|Z83839.2|lncRNA|chr22:32143071:32143272:+	0	+
#Deleted in new
chr22	32149005	32149613	ENSG00000205856.3|C22orf42|pc|chr22:32149005:32149613:-	0	-
#Deleted in new
chr22	32149179	32149613	ENSG00000205856.3|C22orf42|pc|chr22:32149179:32149613:-	0	-
#Deleted in new
chr22	32149752	32149780	ENSG00000205856.3|C22orf42|pc|chr22:32149752:32149780:-	0	-
#Deleted in new
chr22	32149752	32149926	ENSG00000205856.3|C22orf42|pc|chr22:32149752:32149926:-	0	-
#Deleted in new
chr22	32150318	32150479	ENSG00000205856.3|C22orf42|pc|chr22:32150318:32150479:-	0	-
#Deleted in new
chr22	32150318	32151019	ENSG00000205856.3|C22orf42|pc|chr22:32150318:32151019:-	0	-
#Deleted in new
chr22	32150991	32151019	ENSG00000205856.3|C22orf42|pc|chr22:32150991:32151019:-	0	-
#Deleted in new
chr22	32151486	32151551	ENSG00000205856.3|C22orf42|pc|chr22:32151486:32151551:-	0	-
#Deleted in new
chr22	32152066	32152094	ENSG00000205856.3|C22orf42|pc|chr22:32152066:32152094:-	0	-
#Deleted in new
chr22	32152561	32152626	ENSG00000205856.3|C22orf42|pc|chr22:32152561:32152626:-	0	-
#Deleted in new
chr22	32154243	32154318	ENSG00000205856.3|C22orf42|pc|chr22:32154243:32154318:-	0	-
#Deleted in new
chr22	32194344	32194398	ENSG00000128253.13|RFPL2|pc|chr22:32194344:32194398:-	0	-
#Deleted in new
chr22	32194344	32194490	ENSG00000128253.13|RFPL2|pc|chr22:32194344:32194490:-	0	-
#Deleted in new
chr22	32202332	32202451	ENSG00000128253.13|RFPL2|pc|chr22:32202332:32202451:-	0	-
#Deleted in new
chr22	32202332	32202511	ENSG00000128253.13|RFPL2|pc|chr22:32202332:32202511:-	0	-
#Deleted in new
chr22	32202332	32202550	ENSG00000128253.13|RFPL2|pc|chr22:32202332:32202550:-	0	-
#Deleted in new
chr22	32202332	32202571	ENSG00000128253.13|RFPL2|pc|chr22:32202332:32202571:-	0	-
#Deleted in new
chr22	32202640	32203477	ENSG00000128253.13|RFPL2|pc|chr22:32202640:32203477:-	0	-
#Deleted in new
chr22	32205114	32205247	ENSG00000242082.1|SLC5A4-AS1|lncRNA|chr22:32205114:32205247:+	0	+
#Deleted in new
chr22	32207135	32207276	ENSG00000242082.1|SLC5A4-AS1|lncRNA|chr22:32207135:32207276:+	0	+
#Deleted in new
chr22	32284682	32285131	ENSG00000273325.1|AL008723.3|lncRNA|chr22:32284682:32285131:+	0	+
#Deleted in new
chr2	232307535	232307778	ENSG00000144535.19|DIS3L2|pc|chr2:232307535:232307778:+	0	+
#Deleted in new
chr22	32327170	32327437	ENSG00000234626.1|AL021937.3|lncRNA|chr22:32327170:32327437:-	0	-
#Partially deleted in new
chr2	232331669	232331926	ENSG00000144535.19|DIS3L2|pc|chr2:232331669:232331926:+	0	+
#Deleted in new
chr22	32343011	32343105	ENSG00000234626.1|AL021937.3|lncRNA|chr22:32343011:32343105:-	0	-
#Deleted in new
chr22	32354884	32354897	ENSG00000128276.10|RFPL3|pc|chr22:32354884:32354897:+	0	+
#Partially deleted in new
chr22	32362971	32363058	ENSG00000205853.10|RFPL3S|pc|chr22:32362971:32363058:-	0	-
#Partially deleted in new
chr22	32362971	32363117	ENSG00000205853.10|RFPL3S|pc|chr22:32362971:32363117:-	0	-
#Partially deleted in new
chr22	32362973	32363058	ENSG00000205853.10|RFPL3S|pc|chr22:32362973:32363058:-	0	-
#Deleted in new
chr22	32368496	32368567	ENSG00000205853.10|RFPL3S|pc|chr22:32368496:32368567:-	0	-
#Deleted in new
chr22	32370898	32370941	ENSG00000205853.10|RFPL3S|pc|chr22:32370898:32370941:-	0	-
#Deleted in new
chr22	32370898	32370985	ENSG00000205853.10|RFPL3S|pc|chr22:32370898:32370985:-	0	-
#Deleted in new
chr22	32370898	32370999	ENSG00000205853.10|RFPL3S|pc|chr22:32370898:32370999:-	0	-
#Deleted in new
chr22	32370898	32371076	ENSG00000205853.10|RFPL3S|pc|chr22:32370898:32371076:-	0	-
#Deleted in new
chr22	32377260	32377349	ENSG00000205853.10|RFPL3S|pc|chr22:32377260:32377349:-	0	-
#Deleted in new
chr22	32377325	32377737	ENSG00000230736.2|AL021937.1|lncRNA|chr22:32377325:32377737:+	0	+
#Deleted in new
chr22	32381147	32381255	ENSG00000205853.10|RFPL3S|pc|chr22:32381147:32381255:-	0	-
#Partially deleted in new
chr2	232381496	232382889	ENSG00000163283.6|ALPP|pc|chr2:232381496:232382889:+	0	+
#Deleted in new
chr22	32381984	32382052	ENSG00000205853.10|RFPL3S|pc|chr22:32381984:32382052:-	0	-
#Deleted in new
chr22	32383255	32384343	ENSG00000230736.2|AL021937.1|lncRNA|chr22:32383255:32384343:+	0	+
#Deleted in new
chr22	32383785	32384053	ENSG00000241954.1|AL021937.4|lncRNA|chr22:32383785:32384053:+	0	+
#Partially deleted in new
chr22	32407405	32407526	ENSG00000100220.11|RTCB|pc|chr22:32407405:32407526:-	0	-
#Duplicated in new
chr2	232409573	232410714	ENSG00000163286.8|ALPPL2|pc|chr2:232409573:232410714:+	0	+
#Deleted in new
chr22	32478034	32478196	ENSG00000100225.17|FBXO7|pc|chr22:32478034:32478196:+	0	+
#Deleted in new
chr22	32514438	32514650	ENSG00000185666.14|SYN3|pc|chr22:32514438:32514650:-	0	-
#Deleted in new
chr22	32519386	32519686	ENSG00000185666.14|SYN3|pc|chr22:32519386:32519686:-	0	-
#Deleted in new
chr22	32527671	32527685	ENSG00000185666.14|SYN3|pc|chr22:32527671:32527685:-	0	-
#Partially deleted in new
chr2	232547967	232550592	ENSG00000221944.6|TIGD1|pc|chr2:232547967:232550592:-	0	-
#Partially deleted in new
chr2	232550051	232550744	ENSG00000135930.13|EIF4E2|pc|chr2:232550051:232550744:+	0	+
#Deleted in new
chr22	32583876	32584204	ENSG00000236054.1|Z82246.1|lncRNA|chr22:32583876:32584204:+	0	+
#Deleted in new
chr2	232584305	232584372	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232584305:232584372:-	0	-
#Deleted in new
chr2	232584305	232584543	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232584305:232584543:-	0	-
#Deleted in new
chr2	232584305	232584791	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232584305:232584791:-	0	-
#Deleted in new
chr2	232584313	232584543	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232584313:232584543:-	0	-
#Deleted in new
chr2	232584739	232584776	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232584739:232584776:-	0	-
#Deleted in new
chr2	232586059	232586489	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232586059:232586489:-	0	-
#Deleted in new
chr2	232586059	232586746	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232586059:232586746:-	0	-
#Deleted in new
chr2	232586248	232586746	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232586248:232586746:-	0	-
#Deleted in new
chr2	232586310	232586746	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232586310:232586746:-	0	-
#Deleted in new
chr2	232586659	232586746	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232586659:232586746:-	0	-
#Deleted in new
chr2	232586691	232586746	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232586691:232586746:-	0	-
#Deleted in new
chr2	232590994	232591140	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232590994:232591140:-	0	-
#Deleted in new
chr2	232591773	232591822	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232591773:232591822:-	0	-
#Deleted in new
chr2	232595452	232595936	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232595452:232595936:-	0	-
#Deleted in new
chr2	232595456	232595936	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232595456:232595936:-	0	-
#Deleted in new
chr2	232595536	232595936	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232595536:232595936:-	0	-
#Deleted in new
chr2	232595766	232595936	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232595766:232595936:-	0	-
#Deleted in new
chr2	232595819	232595936	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232595819:232595936:-	0	-
#Deleted in new
chr2	232606056	232606173	ENSG00000115468.11|EFHD1|pc|chr2:232606056:232606173:+	0	+
#Deleted in new
chr2	232606572	232606717	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232606572:232606717:-	0	-
#Deleted in new
chr2	232610731	232610799	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232610731:232610799:-	0	-
#Deleted in new
chr2	232610731	232610868	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232610731:232610868:-	0	-
#Deleted in new
chr2	232610731	232610872	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232610731:232610872:-	0	-
#Deleted in new
chr2	232611474	232611654	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232611474:232611654:-	0	-
#Deleted in new
chr2	232611758	232611798	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232611758:232611798:-	0	-
#Deleted in new
chr2	232611758	232611878	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232611758:232611878:-	0	-
#Deleted in new
chr2	232611758	232611971	ENSG00000237126.8|AC073254.1|lncRNA|chr2:232611758:232611971:-	0	-
#Deleted in new
chr2	232719037	232719128	ENSG00000204120.14|GIGYF2|pc|chr2:232719037:232719128:+	0	+
#Deleted in new
chr2	232722553	232722658	ENSG00000204120.14|GIGYF2|pc|chr2:232722553:232722658:+	0	+
#Deleted in new
chr2	232724573	232724691	ENSG00000204120.14|GIGYF2|pc|chr2:232724573:232724691:+	0	+
#Deleted in new
chr2	232731121	232731234	ENSG00000204120.14|GIGYF2|pc|chr2:232731121:232731234:+	0	+
#Deleted in new
chr2	232731121	232731258	ENSG00000204120.14|GIGYF2|pc|chr2:232731121:232731258:+	0	+
#Deleted in new
chr2	232734416	232734486	ENSG00000204120.14|GIGYF2|pc|chr2:232734416:232734486:+	0	+
#Deleted in new
chr2	232764435	232764610	ENSG00000204120.14|GIGYF2|pc|chr2:232764435:232764610:+	0	+
#Deleted in new
chr2	232764443	232764610	ENSG00000204120.14|GIGYF2|pc|chr2:232764443:232764610:+	0	+
#Deleted in new
chr2	232764461	232764610	ENSG00000204120.14|GIGYF2|pc|chr2:232764461:232764610:+	0	+
#Partially deleted in new
chr22	32784896	32784982	ENSG00000229673.1|Z73495.1|lncRNA|chr22:32784896:32784982:+	0	+
#Deleted in new
chr2	232842959	232843048	ENSG00000204120.14|GIGYF2|pc|chr2:232842959:232843048:+	0	+
#Deleted in new
chr2	232869631	232869821	ENSG00000182600.9|C2orf82|pc|chr2:232869631:232869821:+	0	+
#Deleted in new
chr2	232875427	232875555	ENSG00000182600.9|C2orf82|pc|chr2:232875427:232875555:+	0	+
#Partially deleted in new
chr2	232876246	232878704	ENSG00000182600.9|C2orf82|pc|chr2:232876246:232878704:+	0	+
#Partially deleted in new
chr2	232876520	232876923	ENSG00000182600.9|C2orf82|pc|chr2:232876520:232876923:+	0	+
#Deleted in new
chr2	232901361	232901462	ENSG00000066248.14|NGEF|pc|chr2:232901361:232901462:-	0	-
#Deleted in new
chr2	232905644	232905849	ENSG00000066248.14|NGEF|pc|chr2:232905644:232905849:-	0	-
#Deleted in new
chr22	33014400	33014529	ENSG00000185666.14|SYN3|pc|chr22:33014400:33014529:-	0	-
#Deleted in new
chr2	233015706	233015884	ENSG00000222001.2|AC106876.1|lncRNA|chr2:233015706:233015884:+	0	+
#Deleted in new
chr2	233015706	233015885	ENSG00000222001.2|AC106876.1|lncRNA|chr2:233015706:233015885:+	0	+
#Deleted in new
chr22	33105382	33105733	ENSG00000228622.1|Z82198.1|lncRNA|chr22:33105382:33105733:-	0	-
#Deleted in new
chr22	33105973	33106059	ENSG00000228622.1|Z82198.1|lncRNA|chr22:33105973:33106059:-	0	-
#Deleted in new
chr22	33108528	33108625	ENSG00000231253.1|LINC01640|lncRNA|chr22:33108528:33108625:+	0	+
#Deleted in new
chr22	33109102	33109233	ENSG00000231253.1|LINC01640|lncRNA|chr22:33109102:33109233:+	0	+
#Deleted in new
chr22	33110408	33110643	ENSG00000231253.1|LINC01640|lncRNA|chr22:33110408:33110643:+	0	+
#Deleted in new
chr22	33116207	33116294	ENSG00000231253.1|LINC01640|lncRNA|chr22:33116207:33116294:+	0	+
#Deleted in new
chr22	33162225	33166832	ENSG00000133424.20|LARGE1|pc|chr22:33162225:33166832:-	0	-
#Deleted in new
chr22	33164062	33164370	ENSG00000232073.1|Z82198.2|lncRNA|chr22:33164062:33164370:+	0	+
#Deleted in new
chr22	33166004	33166832	ENSG00000133424.20|LARGE1|pc|chr22:33166004:33166832:-	0	-
#Deleted in new
chr22	33166180	33166439	ENSG00000232073.1|Z82198.2|lncRNA|chr22:33166180:33166439:+	0	+
#Deleted in new
chr22	33166386	33166832	ENSG00000133424.20|LARGE1|pc|chr22:33166386:33166832:-	0	-
#Deleted in new
chr22	33166733	33166832	ENSG00000133424.20|LARGE1|pc|chr22:33166733:33166832:-	0	-
#Deleted in new
chr2	233168819	233168905	ENSG00000168918.13|INPP5D|pc|chr2:233168819:233168905:+	0	+
#Deleted in new
chr2	233205597	233205652	ENSG00000168918.13|INPP5D|pc|chr2:233205597:233205652:+	0	+
#Partially deleted in new
chr2	233210326	233210583	ENSG00000085978.21|ATG16L1|pc|chr2:233210326:233210583:+	0	+
#Deleted in new
chr22	33221601	33221751	ENSG00000133424.20|LARGE1|pc|chr22:33221601:33221751:-	0	-
#Deleted in new
chr2	233265954	233266159	ENSG00000085978.21|ATG16L1|pc|chr2:233265954:233266159:+	0	+
#Partially deleted in new
chr2	233318750	233319004	ENSG00000130561.16|SAG|pc|chr2:233318750:233319004:+	0	+
#Deleted in new
chr22	33320864	33321039	ENSG00000230741.1|Z82173.1|lncRNA|chr22:33320864:33321039:+	0	+
#Deleted in new
chr22	33322504	33322813	ENSG00000230741.1|Z82173.1|lncRNA|chr22:33322504:33322813:+	0	+
#Partially deleted in new
chr2	233327948	233328613	ENSG00000130561.16|SAG|pc|chr2:233327948:233328613:+	0	+
#Partially deleted in new
chr2	233334231	233334811	ENSG00000130561.16|SAG|pc|chr2:233334231:233334811:+	0	+
#Partially deleted in new
chr2	233351131	233353416	ENSG00000259793.1|AC013726.1|lncRNA|chr2:233351131:233353416:-	0	-
#Partially deleted in new
chr2	233475525	233477503	ENSG00000085982.13|USP40|pc|chr2:233475525:233477503:-	0	-
#Deleted in new
chr2	23347653	23347773	ENSG00000233714.1|AC012506.3|lncRNA|chr2:23347653:23347773:+	0	+
#Deleted in new
chr2	233481519	233481642	ENSG00000085982.13|USP40|pc|chr2:233481519:233481642:-	0	-
#Partially deleted in new
chr2	233542450	233542616	ENSG00000085982.13|USP40|pc|chr2:233542450:233542616:-	0	-
#Partially deleted in new
chr2	233562735	233562803	ENSG00000085982.13|USP40|pc|chr2:233562735:233562803:-	0	-
#Deleted in new
chr22	33562912	33563263	ENSG00000133424.20|LARGE1|pc|chr22:33562912:33563263:-	0	-
#Deleted in new
chr2	233689898	233689904	ENSG00000244122.2|UGT1A7|pc|chr2:233689898:233689904:+	0	+
#Deleted in new
chr2	233708440	233708699	ENSG00000224814.1|AC114812.2|lncRNA|chr2:233708440:233708699:-	0	-
#Deleted in new
chr22	33723831	33724279	ENSG00000232081.1|LARGE-IT1|lncRNA|chr22:33723831:33724279:-	0	-
#Deleted in new
chr22	33724802	33724912	ENSG00000232081.1|LARGE-IT1|lncRNA|chr22:33724802:33724912:-	0	-
#Deleted in new
chr22	33725013	33725101	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33725013:33725101:+	0	+
#Deleted in new
chr22	33725026	33725101	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33725026:33725101:+	0	+
#Deleted in new
chr22	33725039	33725101	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33725039:33725101:+	0	+
#Deleted in new
chr22	33725068	33725101	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33725068:33725101:+	0	+
#Deleted in new
chr22	33725071	33725101	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33725071:33725101:+	0	+
#Deleted in new
chr22	33725611	33725756	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33725611:33725756:+	0	+
#Deleted in new
chr22	33726115	33726197	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33726115:33726197:+	0	+
#Deleted in new
chr22	33727490	33727588	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33727490:33727588:+	0	+
#Deleted in new
chr22	33727490	33727632	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33727490:33727632:+	0	+
#Deleted in new
chr22	33743134	33743198	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33743134:33743198:+	0	+
#Deleted in new
chr22	33744008	33744328	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33744008:33744328:+	0	+
#Deleted in new
chr22	33744128	33744192	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33744128:33744192:+	0	+
#Deleted in new
chr22	33744128	33744328	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33744128:33744328:+	0	+
#Deleted in new
chr22	33746414	33746457	ENSG00000224973.5|LARGE-AS1|lncRNA|chr22:33746414:33746457:+	0	+
#Deleted in new
chr2	233769530	233769664	ENSG00000167165.18|UGT1A6|pc|chr2:233769530:233769664:+	0	+
#Deleted in new
chr2	233769530	233769664	ENSG00000244474.5|UGT1A4|pc|chr2:233769530:233769664:+	0	+
#Deleted in new
chr2	233769530	233769701	ENSG00000167165.18|UGT1A6|pc|chr2:233769530:233769701:+	0	+
#Deleted in new
chr2	233769530	233770279	ENSG00000242515.5|UGT1A10|pc|chr2:233769530:233770279:+	0	+
#Deleted in new
chr2	233769530	233771615	ENSG00000241635.7|UGT1A1|pc|chr2:233769530:233771615:+	0	+
#Deleted in new
chr2	233775678	233775757	ENSG00000185038.14|MROH2A|pc|chr2:233775678:233775757:+	0	+
#Deleted in new
chr2	233775723	233775757	ENSG00000185038.14|MROH2A|pc|chr2:233775723:233775757:+	0	+
#Deleted in new
chr2	23380123	23380241	ENSG00000235497.5|AC012506.4|lncRNA|chr2:23380123:23380241:-	0	-
#Deleted in new
chr2	233836700	233837652	ENSG00000123485.11|HJURP|pc|chr2:233836700:233837652:-	0	-
#Deleted in new
chr2	233836702	233837652	ENSG00000123485.11|HJURP|pc|chr2:233836702:233837652:-	0	-
#Deleted in new
chr2	233837276	233837652	ENSG00000123485.11|HJURP|pc|chr2:233837276:233837652:-	0	-
#Deleted in new
chr2	233847396	233847461	ENSG00000123485.11|HJURP|pc|chr2:233847396:233847461:-	0	-
#Partially deleted in new
chr2	233947325	233947582	ENSG00000144481.16|TRPM8|pc|chr2:233947325:233947582:+	0	+
#Deleted in new
chr2	233965981	233966127	ENSG00000144481.16|TRPM8|pc|chr2:233965981:233966127:+	0	+
#Deleted in new
chr2	234056057	234056278	ENSG00000072080.10|SPP2|pc|chr2:234056057:234056278:+	0	+
#Deleted in new
chr22	34083968	34084027	ENSG00000236052.1|LINC01643|lncRNA|chr22:34083968:34084027:+	0	+
#Partially deleted in new
chr2	234109080	234109209	ENSG00000226442.2|AC006037.1|lncRNA|chr2:234109080:234109209:+	0	+
#Deleted in new
chr2	234109323	234109481	ENSG00000226442.2|AC006037.1|lncRNA|chr2:234109323:234109481:+	0	+
#Deleted in new
chr22	34151864	34151927	ENSG00000236052.1|LINC01643|lncRNA|chr22:34151864:34151927:+	0	+
#Deleted in new
chr22	34171712	34171778	ENSG00000236052.1|LINC01643|lncRNA|chr22:34171712:34171778:+	0	+
#Deleted in new
chr22	34174309	34174447	ENSG00000236052.1|LINC01643|lncRNA|chr22:34174309:34174447:+	0	+
#Partially deleted in new
chr2	234222837	234223941	ENSG00000261298.1|AC122134.1|lncRNA|chr2:234222837:234223941:+	0	+
#Deleted in new
chr2	234450117	234450398	ENSG00000231682.1|LINC01891|lncRNA|chr2:234450117:234450398:-	0	-
#Deleted in new
chr2	234454484	234454595	ENSG00000231682.1|LINC01891|lncRNA|chr2:234454484:234454595:-	0	-
#Deleted in new
chr2	234695648	234695748	ENSG00000280744.1|LINC01173|lncRNA|chr2:234695648:234695748:+	0	+
#Deleted in new
chr22	34703125	34703423	ENSG00000234891.1|Z82196.1|lncRNA|chr22:34703125:34703423:-	0	-
#Deleted in new
chr22	34704070	34704363	ENSG00000234891.1|Z82196.1|lncRNA|chr22:34704070:34704363:-	0	-
#Deleted in new
chr22	34704708	34704885	ENSG00000234891.1|Z82196.1|lncRNA|chr22:34704708:34704885:-	0	-
#Deleted in new
chr22	34713861	34713973	ENSG00000237316.1|Z82196.2|lncRNA|chr22:34713861:34713973:-	0	-
#Deleted in new
chr22	34724855	34724919	ENSG00000237316.1|Z82196.2|lncRNA|chr22:34724855:34724919:-	0	-
#Partially deleted in new
chr2	234882278	234883478	ENSG00000235726.5|AC010148.1|lncRNA|chr2:234882278:234883478:-	0	-
#Deleted in new
chr2	234884699	234884956	ENSG00000235726.5|AC010148.1|lncRNA|chr2:234884699:234884956:-	0	-
#Deleted in new
chr2	234887776	234887817	ENSG00000235726.5|AC010148.1|lncRNA|chr2:234887776:234887817:-	0	-
#Deleted in new
chr2	234888279	234888526	ENSG00000235726.5|AC010148.1|lncRNA|chr2:234888279:234888526:-	0	-
#Deleted in new
chr2	234888648	234888776	ENSG00000235726.5|AC010148.1|lncRNA|chr2:234888648:234888776:-	0	-
#Deleted in new
chr2	234888648	234888802	ENSG00000235726.5|AC010148.1|lncRNA|chr2:234888648:234888802:-	0	-
#Deleted in new
chr2	234907457	234907575	ENSG00000235726.5|AC010148.1|lncRNA|chr2:234907457:234907575:-	0	-
#Deleted in new
chr2	234913260	234913384	ENSG00000235726.5|AC010148.1|lncRNA|chr2:234913260:234913384:-	0	-
#Deleted in new
chr2	234979461	234979898	ENSG00000130147.15|SH3BP4|pc|chr2:234979461:234979898:+	0	+
#Deleted in new
chr2	234983242	234983296	ENSG00000130147.15|SH3BP4|pc|chr2:234983242:234983296:+	0	+
#Deleted in new
chr2	234994523	234994628	ENSG00000130147.15|SH3BP4|pc|chr2:234994523:234994628:+	0	+
#Deleted in new
chr2	234994839	234994960	ENSG00000130147.15|SH3BP4|pc|chr2:234994839:234994960:+	0	+
#Deleted in new
chr2	235084821	235085295	ENSG00000226542.1|AC114814.1|lncRNA|chr2:235084821:235085295:-	0	-
#Deleted in new
chr2	235085599	235085692	ENSG00000226542.1|AC114814.1|lncRNA|chr2:235085599:235085692:-	0	-
#Deleted in new
chr22	35122660	35122746	ENSG00000273068.1|Z99755.2|lncRNA|chr22:35122660:35122746:+	0	+
#Deleted in new
chr2	235177895	235178065	ENSG00000235293.1|AC114814.3|lncRNA|chr2:235177895:235178065:+	0	+
#Deleted in new
chr2	235178412	235178905	ENSG00000235293.1|AC114814.3|lncRNA|chr2:235178412:235178905:+	0	+
#Deleted in new
chr22	35298837	35299134	ENSG00000273176.1|AL008635.1|lncRNA|chr22:35298837:35299134:-	0	-
#Deleted in new
chr22	35331295	35331495	ENSG00000100284.20|TOM1|pc|chr22:35331295:35331495:+	0	+
#Partially deleted in new
chr22	35372173	35372621	ENSG00000282602.1|Z82244.2|lncRNA|chr22:35372173:35372621:+	0	+
#Deleted in new
chr22	35401370	35401466	ENSG00000100297.15|MCM5|pc|chr22:35401370:35401466:+	0	+
#Deleted in new
chr22	35401665	35401814	ENSG00000100297.15|MCM5|pc|chr22:35401665:35401814:+	0	+
#Deleted in new
chr2	235505750	235505800	ENSG00000235529.1|AGAP1-IT1|lncRNA|chr2:235505750:235505800:+	0	+
#Partially deleted in new
chr2	235506952	235507566	ENSG00000235529.1|AGAP1-IT1|lncRNA|chr2:235506952:235507566:+	0	+
#Deleted in new
chr2	235524323	235524539	ENSG00000157985.18|AGAP1|pc|chr2:235524323:235524539:+	0	+
#Deleted in new
chr22	35526931	35527415	ENSG00000273044.1|AL022334.2|lncRNA|chr22:35526931:35527415:+	0	+
#Deleted in new
chr22	35626987	35627659	ENSG00000268818.2|AL049747.1|lncRNA|chr22:35626987:35627659:-	0	-
#Deleted in new
chr22	35634954	35635134	ENSG00000268818.2|AL049747.1|lncRNA|chr22:35634954:35635134:-	0	-
#Deleted in new
chr22	35637105	35637208	ENSG00000198125.12|MB|pc|chr22:35637105:35637208:-	0	-
#Deleted in new
chr22	35637865	35637951	ENSG00000198125.12|MB|pc|chr22:35637865:35637951:-	0	-
#Deleted in new
chr22	35648394	35648623	ENSG00000221963.5|APOL6|pc|chr22:35648394:35648623:+	0	+
#Split in new
chr22	35658614	35668409	ENSG00000221963.5|APOL6|pc|chr22:35658614:35668409:+	0	+
#Deleted in new
chr22	35685939	35686014	ENSG00000228587.1|AL049748.1|lncRNA|chr22:35685939:35686014:+	0	+
#Deleted in new
chr22	35688847	35689373	ENSG00000228587.1|AL049748.1|lncRNA|chr22:35688847:35689373:+	0	+
#Deleted in new
chr22	35717871	35717926	ENSG00000128313.2|APOL5|pc|chr22:35717871:35717926:+	0	+
#Deleted in new
chr22	35720567	35720654	ENSG00000128313.2|APOL5|pc|chr22:35720567:35720654:+	0	+
#Deleted in new
chr22	35728722	35728904	ENSG00000128313.2|APOL5|pc|chr22:35728722:35728904:+	0	+
#Deleted in new
chr22	35729353	35729483	ENSG00000128313.2|APOL5|pc|chr22:35729353:35729483:+	0	+
#Deleted in new
chr2	235773854	235773982	ENSG00000222007.6|AC064874.1|lncRNA|chr2:235773854:235773982:-	0	-
#Deleted in new
chr2	235774302	235774477	ENSG00000222007.6|AC064874.1|lncRNA|chr2:235774302:235774477:-	0	-
#Deleted in new
chr2	235775656	235775794	ENSG00000222007.6|AC064874.1|lncRNA|chr2:235775656:235775794:-	0	-
#Deleted in new
chr2	235776956	235777041	ENSG00000222007.6|AC064874.1|lncRNA|chr2:235776956:235777041:-	0	-
#Partially deleted in new
chr22	35777655	35778078	ENSG00000100320.22|RBFOX2|pc|chr22:35777655:35778078:-	0	-
#Deleted in new
chr2	235783313	235783387	ENSG00000222007.6|AC064874.1|lncRNA|chr2:235783313:235783387:-	0	-
#Deleted in new
chr2	236045936	236046031	ENSG00000157985.18|AGAP1|pc|chr2:236045936:236046031:+	0	+
#Deleted in new
chr22	36066532	36070110	ENSG00000279927.1|Z95114.4|lncRNA|chr22:36066532:36070110:+	0	+
#Split in new
chr22	36070999	36085573	ENSG00000279217.1|Z95114.1|lncRNA|chr22:36070999:36085573:+	0	+
#Deleted in new
chr22	36091147	36093352	ENSG00000279714.1|Z95114.2|lncRNA|chr22:36091147:36093352:+	0	+
#Deleted in new
chr22	36149045	36149126	ENSG00000128284.19|APOL3|pc|chr22:36149045:36149126:-	0	-
#Deleted in new
chr22	36149045	36149142	ENSG00000128284.19|APOL3|pc|chr22:36149045:36149142:-	0	-
#Partially deleted in new
chr22	36149045	36149185	ENSG00000128284.19|APOL3|pc|chr22:36149045:36149185:-	0	-
#Deleted in new
chr22	36149074	36149142	ENSG00000128284.19|APOL3|pc|chr22:36149074:36149142:-	0	-
#Deleted in new
chr22	36149770	36149964	ENSG00000128284.19|APOL3|pc|chr22:36149770:36149964:-	0	-
#Deleted in new
chr22	36153284	36153423	ENSG00000128284.19|APOL3|pc|chr22:36153284:36153423:-	0	-
#Deleted in new
chr22	36154448	36154628	ENSG00000128284.19|APOL3|pc|chr22:36154448:36154628:-	0	-
#Deleted in new
chr22	36155719	36156037	ENSG00000128284.19|APOL3|pc|chr22:36155719:36156037:-	0	-
#Deleted in new
chr22	36156748	36156885	ENSG00000128284.19|APOL3|pc|chr22:36156748:36156885:-	0	-
#Deleted in new
chr22	36156843	36156886	ENSG00000128284.19|APOL3|pc|chr22:36156843:36156886:-	0	-
#Deleted in new
chr22	36156843	36156936	ENSG00000128284.19|APOL3|pc|chr22:36156843:36156936:-	0	-
#Deleted in new
chr22	36156843	36156938	ENSG00000128284.19|APOL3|pc|chr22:36156843:36156938:-	0	-
#Deleted in new
chr22	36156843	36156949	ENSG00000128284.19|APOL3|pc|chr22:36156843:36156949:-	0	-
#Deleted in new
chr22	36156843	36157006	ENSG00000128284.19|APOL3|pc|chr22:36156843:36157006:-	0	-
#Deleted in new
chr22	36159229	36159680	ENSG00000128284.19|APOL3|pc|chr22:36159229:36159680:-	0	-
#Deleted in new
chr22	36161483	36161546	ENSG00000128284.19|APOL3|pc|chr22:36161483:36161546:-	0	-
#Deleted in new
chr22	36164591	36166177	ENSG00000128284.19|APOL3|pc|chr22:36164591:36166177:-	0	-
#Split in new
chr22	36189123	36191912	ENSG00000100336.17|APOL4|pc|chr22:36189123:36191912:-	0	-
#Split in new
chr22	36189128	36191912	ENSG00000100336.17|APOL4|pc|chr22:36189128:36191912:-	0	-
#Deleted in new
chr22	36197454	36197831	ENSG00000100336.17|APOL4|pc|chr22:36197454:36197831:-	0	-
#Deleted in new
chr22	36197455	36197831	ENSG00000100336.17|APOL4|pc|chr22:36197455:36197831:-	0	-
#Deleted in new
chr22	36199329	36199375	ENSG00000100336.17|APOL4|pc|chr22:36199329:36199375:-	0	-
#Deleted in new
chr22	36199329	36199376	ENSG00000100336.17|APOL4|pc|chr22:36199329:36199376:-	0	-
#Deleted in new
chr22	36199329	36199419	ENSG00000100336.17|APOL4|pc|chr22:36199329:36199419:-	0	-
#Deleted in new
chr22	36199334	36199376	ENSG00000100336.17|APOL4|pc|chr22:36199334:36199376:-	0	-
#Deleted in new
chr22	36199554	36199608	ENSG00000100336.17|APOL4|pc|chr22:36199554:36199608:-	0	-
#Deleted in new
chr22	36199555	36199608	ENSG00000100336.17|APOL4|pc|chr22:36199555:36199608:-	0	-
#Partially deleted in new
chr22	36201583	36202055	ENSG00000100336.17|APOL4|pc|chr22:36201583:36202055:-	0	-
#Deleted in new
chr22	36201699	36201796	ENSG00000100336.17|APOL4|pc|chr22:36201699:36201796:-	0	-
#Deleted in new
chr22	36201699	36201841	ENSG00000100336.17|APOL4|pc|chr22:36201699:36201841:-	0	-
#Deleted in new
chr22	36201699	36201877	ENSG00000100336.17|APOL4|pc|chr22:36201699:36201877:-	0	-
#Deleted in new
chr22	36201699	36201888	ENSG00000100336.17|APOL4|pc|chr22:36201699:36201888:-	0	-
#Partially deleted in new
chr22	36201699	36202055	ENSG00000100336.17|APOL4|pc|chr22:36201699:36202055:-	0	-
#Deleted in new
chr22	36233152	36233241	ENSG00000128335.13|APOL2|pc|chr22:36233152:36233241:-	0	-
#Partially deleted in new
chr22	36236884	36237363	ENSG00000128335.13|APOL2|pc|chr22:36236884:36237363:-	0	-
#Partially deleted in new
chr22	36236926	36237363	ENSG00000128335.13|APOL2|pc|chr22:36236926:36237363:-	0	-
#Partially deleted in new
chr22	36236932	36237363	ENSG00000128335.13|APOL2|pc|chr22:36236932:36237363:-	0	-
#Partially deleted in new
chr22	36236963	36237360	ENSG00000128335.13|APOL2|pc|chr22:36236963:36237360:-	0	-
#Deleted in new
chr22	36237060	36237185	ENSG00000128335.13|APOL2|pc|chr22:36237060:36237185:-	0	-
#Deleted in new
chr22	36239646	36239673	ENSG00000128335.13|APOL2|pc|chr22:36239646:36239673:-	0	-
#Deleted in new
chr22	36239731	36239954	ENSG00000128335.13|APOL2|pc|chr22:36239731:36239954:-	0	-
#Split in new
chr22	36253837	36253991	ENSG00000100342.20|APOL1|pc|chr22:36253837:36253991:+	0	+
#Deleted in new
chr22	36257318	36257407	ENSG00000100342.20|APOL1|pc|chr22:36257318:36257407:+	0	+
#Deleted in new
chr22	36257318	36257560	ENSG00000100342.20|APOL1|pc|chr22:36257318:36257560:+	0	+
#Deleted in new
chr22	36259668	36259856	ENSG00000100342.20|APOL1|pc|chr22:36259668:36259856:+	0	+
#Deleted in new
chr22	36259668	36259918	ENSG00000100342.20|APOL1|pc|chr22:36259668:36259918:+	0	+
#Deleted in new
chr22	36266888	36267083	ENSG00000100342.20|APOL1|pc|chr22:36266888:36267083:+	0	+
#Deleted in new
chr2	236277371	236277452	ENSG00000233611.3|AC019068.1|lncRNA|chr2:236277371:236277452:+	0	+
#Deleted in new
chr2	236294772	236294927	ENSG00000233611.3|AC019068.1|lncRNA|chr2:236294772:236294927:+	0	+
#Deleted in new
chr2	236346685	236346751	ENSG00000132321.16|IQCA1|pc|chr2:236346685:236346751:-	0	-
#Deleted in new
chr2	236412595	236412891	ENSG00000132321.16|IQCA1|pc|chr2:236412595:236412891:-	0	-
#Deleted in new
chr22	36445394	36445604	ENSG00000228719.1|AL022313.2|lncRNA|chr22:36445394:36445604:-	0	-
#Deleted in new
chr22	36454782	36454944	ENSG00000228719.1|AL022313.2|lncRNA|chr22:36454782:36454944:-	0	-
#Deleted in new
chr22	36468601	36468717	ENSG00000100348.9|TXN2|pc|chr22:36468601:36468717:-	0	-
#Partially deleted in new
chr22	36526819	36526905	ENSG00000100353.17|EIF3D|pc|chr22:36526819:36526905:-	0	-
#Deleted in new
chr22	36552164	36552307	ENSG00000229971.1|AL022313.3|lncRNA|chr22:36552164:36552307:+	0	+
#Deleted in new
chr22	36552438	36552700	ENSG00000229971.1|AL022313.3|lncRNA|chr22:36552438:36552700:+	0	+
#Deleted in new
chr2	236567786	236567841	ENSG00000144476.5|ACKR3|pc|chr2:236567786:236567841:+	0	+
#Partially deleted in new
chr2	23667207	23669261	ENSG00000283031.1|AC009242.1|lncRNA|chr2:23667207:23669261:-	0	-
#Deleted in new
chr2	23669341	23669501	ENSG00000283031.1|AC009242.1|lncRNA|chr2:23669341:23669501:-	0	-
#Deleted in new
chr2	23671951	23672004	ENSG00000283031.1|AC009242.1|lncRNA|chr2:23671951:23672004:-	0	-
#Deleted in new
chr22	36720915	36721472	ENSG00000234688.1|AL049749.1|lncRNA|chr22:36720915:36721472:+	0	+
#Deleted in new
chr2	23672315	23672413	ENSG00000283031.1|AC009242.1|lncRNA|chr2:23672315:23672413:-	0	-
#Deleted in new
chr2	23672725	23672806	ENSG00000283031.1|AC009242.1|lncRNA|chr2:23672725:23672806:-	0	-
#Deleted in new
chr2	236733381	236733582	ENSG00000232328.1|AC084030.1|lncRNA|chr2:236733381:236733582:+	0	+
#Deleted in new
chr2	236748368	236748410	ENSG00000232328.1|AC084030.1|lncRNA|chr2:236748368:236748410:+	0	+
#Partially deleted in new
chr22	36811474	36811524	ENSG00000100362.12|PVALB|pc|chr22:36811474:36811524:-	0	-
#Deleted in new
chr22	36965247	36965513	ENSG00000215403.1|LL22NC01-81G9.3|lncRNA|chr22:36965247:36965513:+	0	+
#Deleted in new
chr22	36966389	36966507	ENSG00000215403.1|LL22NC01-81G9.3|lncRNA|chr22:36966389:36966507:+	0	+
#Deleted in new
chr22	36967167	36967588	ENSG00000215403.1|LL22NC01-81G9.3|lncRNA|chr22:36967167:36967588:+	0	+
#Deleted in new
chr22	36967985	36968172	ENSG00000215403.1|LL22NC01-81G9.3|lncRNA|chr22:36967985:36968172:+	0	+
#Deleted in new
chr22	37025001	37025081	ENSG00000128309.16|MPST|pc|chr22:37025001:37025081:+	0	+
#Deleted in new
chr22	37025001	37025127	ENSG00000128309.16|MPST|pc|chr22:37025001:37025127:+	0	+
#Deleted in new
chr2	237048598	237048966	ENSG00000124835.2|AC105760.1|lncRNA|chr2:237048598:237048966:-	0	-
#Deleted in new
chr2	237054346	237054491	ENSG00000124835.2|AC105760.1|lncRNA|chr2:237054346:237054491:-	0	-
#Deleted in new
chr2	237054999	237055121	ENSG00000124835.2|AC105760.1|lncRNA|chr2:237054999:237055121:-	0	-
#Deleted in new
chr2	237059433	237060112	ENSG00000227252.1|AC105760.2|lncRNA|chr2:237059433:237060112:-	0	-
#Deleted in new
chr22	37082478	37082558	ENSG00000231467.2|AL022314.1|lncRNA|chr22:37082478:37082558:+	0	+
#Deleted in new
chr22	37082656	37082847	ENSG00000231467.2|AL022314.1|lncRNA|chr22:37082656:37082847:+	0	+
#Deleted in new
chr22	37082849	37083086	ENSG00000187045.16|TMPRSS6|pc|chr22:37082849:37083086:-	0	-
#Partially deleted in new
chr2	237084155	237085817	ENSG00000227252.1|AC105760.2|lncRNA|chr2:237084155:237085817:-	0	-
#Partially deleted in new
chr2	237087463	237087563	ENSG00000198612.10|COPS8|pc|chr2:237087463:237087563:+	0	+
#Deleted in new
chr2	237122909	237123533	ENSG00000224844.1|AC107079.1|lncRNA|chr2:237122909:237123533:-	0	-
#Deleted in new
chr2	237124052	237124097	ENSG00000224844.1|AC107079.1|lncRNA|chr2:237124052:237124097:-	0	-
#Deleted in new
chr22	37166756	37166964	ENSG00000235237.1|Z82188.2|lncRNA|chr22:37166756:37166964:+	0	+
#Deleted in new
chr22	37174957	37175054	ENSG00000100385.13|IL2RB|pc|chr22:37174957:37175054:-	0	-
#Deleted in new
chr22	37174993	37175054	ENSG00000100385.13|IL2RB|pc|chr22:37174993:37175054:-	0	-
#Deleted in new
chr22	37190552	37190677	ENSG00000133466.13|C1QTNF6|pc|chr22:37190552:37190677:-	0	-
#Deleted in new
chr22	37190864	37190928	ENSG00000133466.13|C1QTNF6|pc|chr22:37190864:37190928:-	0	-
#Deleted in new
chr22	37191671	37191737	ENSG00000133466.13|C1QTNF6|pc|chr22:37191671:37191737:-	0	-
#Deleted in new
chr22	37195380	37195458	ENSG00000133466.13|C1QTNF6|pc|chr22:37195380:37195458:-	0	-
#Deleted in new
chr22	37195380	37195512	ENSG00000133466.13|C1QTNF6|pc|chr22:37195380:37195512:-	0	-
#Deleted in new
chr22	37197602	37197748	ENSG00000133466.13|C1QTNF6|pc|chr22:37197602:37197748:-	0	-
#Deleted in new
chr22	37197602	37197841	ENSG00000133466.13|C1QTNF6|pc|chr22:37197602:37197841:-	0	-
#Deleted in new
chr22	37199323	37199385	ENSG00000133466.13|C1QTNF6|pc|chr22:37199323:37199385:-	0	-
#Deleted in new
chr2	237257090	237257193	ENSG00000224132.2|AC112715.1|lncRNA|chr2:237257090:237257193:+	0	+
#Partially deleted in new
chr22	37292143	37292703	ENSG00000100055.20|CYTH4|pc|chr22:37292143:37292703:+	0	+
#Deleted in new
chr22	37301880	37302019	ENSG00000100055.20|CYTH4|pc|chr22:37301880:37302019:+	0	+
#Deleted in new
chr22	37301934	37302031	ENSG00000100055.20|CYTH4|pc|chr22:37301934:37302031:+	0	+
#Deleted in new
chr22	37304171	37304286	ENSG00000100055.20|CYTH4|pc|chr22:37304171:37304286:+	0	+
#Partially deleted in new
chr2	237325559	237330180	ENSG00000163359.15|COL6A3|pc|chr2:237325559:237330180:-	0	-
#Deleted in new
chr22	37339582	37341015	ENSG00000243902.6|ELFN2|lncRNA|chr22:37339582:37341015:-	0	-
#Deleted in new
chr22	37340643	37340969	ENSG00000243902.6|ELFN2|lncRNA|chr22:37340643:37340969:-	0	-
#Deleted in new
chr22	37352189	37352440	ENSG00000237862.1|Z94160.1|lncRNA|chr22:37352189:37352440:-	0	-
#Deleted in new
chr22	37353125	37354839	ENSG00000237862.1|Z94160.1|lncRNA|chr22:37353125:37354839:-	0	-
#Partially deleted in new
chr22	37420453	37420491	ENSG00000166897.14|ELFN2|pc|chr22:37420453:37420491:-	0	-
#Deleted in new
chr2	237422124	237422233	ENSG00000222022.1|AC112721.1|lncRNA|chr2:237422124:237422233:-	0	-
#Deleted in new
chr2	237428919	237429198	ENSG00000222032.1|AC112721.2|lncRNA|chr2:237428919:237429198:-	0	-
#Deleted in new
chr2	237434656	237434822	ENSG00000222032.1|AC112721.2|lncRNA|chr2:237434656:237434822:-	0	-
#Deleted in new
chr22	37481234	37481371	ENSG00000100060.17|MFNG|pc|chr22:37481234:37481371:-	0	-
#Deleted in new
chr2	237485427	237485670	ENSG00000115648.13|MLPH|pc|chr2:237485427:237485670:+	0	+
#Partially deleted in new
chr2	237486408	237486738	ENSG00000115648.13|MLPH|pc|chr2:237486408:237486738:+	0	+
#Partially deleted in new
chr2	237486409	237486738	ENSG00000115648.13|MLPH|pc|chr2:237486409:237486738:+	0	+
#Deleted in new
chr2	237507248	237507385	ENSG00000115648.13|MLPH|pc|chr2:237507248:237507385:+	0	+
#Split in new
chr2	237510988	237511622	ENSG00000115648.13|MLPH|pc|chr2:237510988:237511622:+	0	+
#Deleted in new
chr2	237537498	237537725	ENSG00000115648.13|MLPH|pc|chr2:237537498:237537725:+	0	+
#Deleted in new
chr2	237545456	237545769	ENSG00000115648.13|MLPH|pc|chr2:237545456:237545769:+	0	+
#Deleted in new
chr2	237553096	237553231	ENSG00000115648.13|MLPH|pc|chr2:237553096:237553231:+	0	+
#Partially deleted in new
chr2	237553565	237555318	ENSG00000115648.13|MLPH|pc|chr2:237553565:237555318:+	0	+
#Partially deleted in new
chr22	37565599	37565722	ENSG00000128283.6|CDC42EP1|pc|chr22:37565599:37565722:+	0	+
#Partially deleted in new
chr2	237575386	237575884	ENSG00000124839.12|RAB17|pc|chr2:237575386:237575884:-	0	-
#Deleted in new
chr2	237576583	237576690	ENSG00000124839.12|RAB17|pc|chr2:237576583:237576690:-	0	-
#Deleted in new
chr22	37582437	37582616	ENSG00000100079.6|LGALS2|pc|chr22:37582437:37582616:-	0	-
#Deleted in new
chr2	237585402	237585564	ENSG00000124839.12|RAB17|pc|chr2:237585402:237585564:-	0	-
#Deleted in new
chr2	237590466	237590660	ENSG00000124839.12|RAB17|pc|chr2:237590466:237590660:-	0	-
#Deleted in new
chr2	237590466	237590715	ENSG00000124839.12|RAB17|pc|chr2:237590466:237590715:-	0	-
#Deleted in new
chr2	237590466	237590731	ENSG00000124839.12|RAB17|pc|chr2:237590466:237590731:-	0	-
#Deleted in new
chr2	237590466	237590734	ENSG00000124839.12|RAB17|pc|chr2:237590466:237590734:-	0	-
#Deleted in new
chr2	237590466	237590780	ENSG00000124839.12|RAB17|pc|chr2:237590466:237590780:-	0	-
#Deleted in new
chr2	237590466	237591071	ENSG00000124839.12|RAB17|pc|chr2:237590466:237591071:-	0	-
#Deleted in new
chr2	237590466	237591093	ENSG00000124839.12|RAB17|pc|chr2:237590466:237591093:-	0	-
#Deleted in new
chr2	237590524	237590974	ENSG00000124839.12|RAB17|pc|chr2:237590524:237590974:-	0	-
#Deleted in new
chr2	237591019	237591267	ENSG00000234949.2|AC104667.2|lncRNA|chr2:237591019:237591267:+	0	+
#Deleted in new
chr2	237591168	237591267	ENSG00000234949.2|AC104667.2|lncRNA|chr2:237591168:237591267:+	0	+
#Deleted in new
chr2	237591565	237591771	ENSG00000234949.2|AC104667.2|lncRNA|chr2:237591565:237591771:+	0	+
#Deleted in new
chr2	237591871	237592006	ENSG00000234949.2|AC104667.2|lncRNA|chr2:237591871:237592006:+	0	+
#Deleted in new
chr2	237591871	237592031	ENSG00000234949.2|AC104667.2|lncRNA|chr2:237591871:237592031:+	0	+
#Deleted in new
chr2	237601506	237601614	ENSG00000124839.12|RAB17|pc|chr2:237601506:237601614:-	0	-
#Partially deleted in new
chr22	37610141	37610486	ENSG00000100083.18|GGA1|pc|chr22:37610141:37610486:+	0	+
#Partially deleted in new
chr22	37610576	37610699	ENSG00000100083.18|GGA1|pc|chr22:37610576:37610699:+	0	+
#Deleted in new
chr22	37612535	37613191	ENSG00000100083.18|GGA1|pc|chr22:37612535:37613191:+	0	+
#Deleted in new
chr2	237612976	237613253	ENSG00000227107.1|AC104667.1|lncRNA|chr2:237612976:237613253:+	0	+
#Deleted in new
chr22	37613023	37613191	ENSG00000100083.18|GGA1|pc|chr22:37613023:37613191:+	0	+
#Deleted in new
chr22	37613032	37613191	ENSG00000100083.18|GGA1|pc|chr22:37613032:37613191:+	0	+
#Deleted in new
chr22	37613118	37613191	ENSG00000100083.18|GGA1|pc|chr22:37613118:37613191:+	0	+
#Partially deleted in new
chr22	37623828	37625076	ENSG00000100083.18|GGA1|pc|chr22:37623828:37625076:+	0	+
#Partially deleted in new
chr22	37625796	37627162	ENSG00000100083.18|GGA1|pc|chr22:37625796:37627162:+	0	+
#Partially deleted in new
chr2	237684201	237684473	ENSG00000124831.18|LRRFIP1|pc|chr2:237684201:237684473:+	0	+
#Partially deleted in new
chr22	37691173	37693478	ENSG00000273899.4|NOL12|pc|chr22:37691173:37693478:+	0	+
#Deleted in new
chr22	37693331	37693410	ENSG00000100101.15|Z83844.1|pc|chr22:37693331:37693410:+	0	+
#Deleted in new
chr22	37693331	37693471	ENSG00000273899.4|NOL12|pc|chr22:37693331:37693471:+	0	+
#Deleted in new
chr22	37693331	37693475	ENSG00000273899.4|NOL12|pc|chr22:37693331:37693475:+	0	+
#Deleted in new
chr22	37693331	37693476	ENSG00000273899.4|NOL12|pc|chr22:37693331:37693476:+	0	+
#Deleted in new
chr2	237798388	237798861	ENSG00000177483.11|RBM44|pc|chr2:237798388:237798861:+	0	+
#Deleted in new
chr2	237798744	237798861	ENSG00000177483.11|RBM44|pc|chr2:237798744:237798861:+	0	+
#Deleted in new
chr2	237798751	237798861	ENSG00000177483.11|RBM44|pc|chr2:237798751:237798861:+	0	+
#Deleted in new
chr2	237799177	237799416	ENSG00000177483.11|RBM44|pc|chr2:237799177:237799416:+	0	+
#Deleted in new
chr22	37813276	37813300	ENSG00000100116.16|GCAT|pc|chr22:37813276:37813300:+	0	+
#Partially deleted in new
chr22	37848178	37849318	ENSG00000100124.14|ANKRD54|pc|chr22:37848178:37849318:-	0	-
#Partially deleted in new
chr22	37848867	37849482	ENSG00000100129.17|EIF3L|pc|chr22:37848867:37849482:+	0	+
#Partially deleted in new
chr22	37848936	37849327	ENSG00000100124.14|ANKRD54|pc|chr22:37848936:37849327:-	0	-
#Deleted in new
chr22	37871199	37871284	ENSG00000100129.17|EIF3L|pc|chr22:37871199:37871284:+	0	+
#Deleted in new
chr22	37871199	37871290	ENSG00000100129.17|EIF3L|pc|chr22:37871199:37871290:+	0	+
#Partially deleted in new
chr22	37876147	37895563	ENSG00000279738.1|AL022311.1|lncRNA|chr22:37876147:37895563:+	0	+
#Deleted in new
chr22	37886949	37887071	ENSG00000100129.17|EIF3L|pc|chr22:37886949:37887071:+	0	+
#Partially deleted in new
chr22	37941669	37942009	ENSG00000100139.13|MICALL1|pc|chr22:37941669:37942009:+	0	+
#Deleted in new
chr22	37952606	37952815	ENSG00000100142.14|POLR2F|pc|chr22:37952606:37952815:+	0	+
#Deleted in new
chr22	37958373	37958471	ENSG00000100142.14|POLR2F|pc|chr22:37958373:37958471:+	0	+
#Partially deleted in new
chr2	237986161	237986292	ENSG00000184182.18|UBE2F|pc|chr2:237986161:237986292:+	0	+
#Deleted in new
chr2	237990423	237990552	ENSG00000184182.18|UBE2F|pc|chr2:237990423:237990552:+	0	+
#Deleted in new
chr22	38025578	38025768	ENSG00000100142.14|POLR2F|pc|chr22:38025578:38025768:+	0	+
#Partially deleted in new
chr2	238032221	238032669	ENSG00000184182.18|UBE2F|pc|chr2:238032221:238032669:+	0	+
#Deleted in new
chr2	238057157	238057250	ENSG00000258984.5|UBE2F-SCLY|pc|chr2:238057157:238057250:+	0	+
#Deleted in new
chr2	238060888	238061143	ENSG00000132330.16|SCLY|pc|chr2:238060888:238061143:+	0	+
#Deleted in new
chr2	238060927	238061143	ENSG00000132330.16|SCLY|pc|chr2:238060927:238061143:+	0	+
#Deleted in new
chr2	238060965	238061143	ENSG00000132330.16|SCLY|pc|chr2:238060965:238061143:+	0	+
#Deleted in new
chr2	238061000	238061143	ENSG00000132330.16|SCLY|pc|chr2:238061000:238061143:+	0	+
#Deleted in new
chr2	238061019	238061143	ENSG00000132330.16|SCLY|pc|chr2:238061019:238061143:+	0	+
#Deleted in new
chr2	238061030	238061143	ENSG00000132330.16|SCLY|pc|chr2:238061030:238061143:+	0	+
#Deleted in new
chr2	238061042	238061143	ENSG00000132330.16|SCLY|pc|chr2:238061042:238061143:+	0	+
#Deleted in new
chr2	238061053	238061143	ENSG00000132330.16|SCLY|pc|chr2:238061053:238061143:+	0	+
#Deleted in new
chr2	238061081	238061349	ENSG00000132330.16|SCLY|pc|chr2:238061081:238061349:+	0	+
#Deleted in new
chr2	238061090	238061143	ENSG00000132330.16|SCLY|pc|chr2:238061090:238061143:+	0	+
#Deleted in new
chr2	238061112	238061143	ENSG00000132330.16|SCLY|pc|chr2:238061112:238061143:+	0	+
#Deleted in new
chr2	238061292	238061385	ENSG00000132330.16|SCLY|pc|chr2:238061292:238061385:+	0	+
#Deleted in new
chr2	23806170	23806228	ENSG00000119778.14|ATAD2B|pc|chr2:23806170:23806228:-	0	-
#Deleted in new
chr2	23806173	23806228	ENSG00000119778.14|ATAD2B|pc|chr2:23806173:23806228:-	0	-
#Deleted in new
chr22	38068071	38068114	ENSG00000100151.15|PICK1|pc|chr22:38068071:38068114:+	0	+
#Deleted in new
chr2	238073782	238073847	ENSG00000132330.16|SCLY|pc|chr2:238073782:238073847:+	0	+
#Partially deleted in new
chr2	238078564	238081836	ENSG00000132330.16|SCLY|pc|chr2:238078564:238081836:+	0	+
#Partially deleted in new
chr22	38090126	38091559	ENSG00000272720.1|AL022322.1|lncRNA|chr22:38090126:38091559:+	0	+
#Partially deleted in new
chr2	238091217	238092083	ENSG00000132330.16|SCLY|pc|chr2:238091217:238092083:+	0	+
#Partially deleted in new
chr2	238095494	238096186	ENSG00000132330.16|SCLY|pc|chr2:238095494:238096186:+	0	+
#Deleted in new
chr2	238096800	238096876	ENSG00000132330.16|SCLY|pc|chr2:238096800:238096876:+	0	+
#Deleted in new
chr2	238096800	238096876	ENSG00000258984.5|UBE2F-SCLY|pc|chr2:238096800:238096876:+	0	+
#Deleted in new
chr2	23811191	23811470	ENSG00000119778.14|ATAD2B|pc|chr2:23811191:23811470:-	0	-
#Deleted in new
chr22	38116319	38116410	ENSG00000184381.18|PLA2G6|pc|chr22:38116319:38116410:-	0	-
#Deleted in new
chr22	38125638	38125691	ENSG00000184381.18|PLA2G6|pc|chr22:38125638:38125691:-	0	-
#Partially deleted in new
chr22	38130215	38150612	ENSG00000279080.1|AL022322.2|lncRNA|chr22:38130215:38150612:+	0	+
#Deleted in new
chr22	38131989	38132111	ENSG00000184381.18|PLA2G6|pc|chr22:38131989:38132111:-	0	-
#Deleted in new
chr22	38144895	38144978	ENSG00000184381.18|PLA2G6|pc|chr22:38144895:38144978:-	0	-
#Deleted in new
chr22	38147367	38147475	ENSG00000184381.18|PLA2G6|pc|chr22:38147367:38147475:-	0	-
#Deleted in new
chr22	38147378	38147475	ENSG00000184381.18|PLA2G6|pc|chr22:38147378:38147475:-	0	-
#Deleted in new
chr22	38148492	38148623	ENSG00000184381.18|PLA2G6|pc|chr22:38148492:38148623:-	0	-
#Partially deleted in new
chr2	238152888	238155994	ENSG00000279484.1|KLHL30-AS1|lncRNA|chr2:238152888:238155994:-	0	-
#Deleted in new
chr22	38163414	38163672	ENSG00000184381.18|PLA2G6|pc|chr22:38163414:38163672:-	0	-
#Partially deleted in new
chr2	238164269	238164726	ENSG00000178752.15|ERFE|pc|chr2:238164269:238164726:+	0	+
#Deleted in new
chr22	38167917	38168090	ENSG00000184381.18|PLA2G6|pc|chr22:38167917:38168090:-	0	-
#Deleted in new
chr22	38167942	38168077	ENSG00000184381.18|PLA2G6|pc|chr22:38167942:38168077:-	0	-
#Deleted in new
chr22	38180324	38180404	ENSG00000184381.18|PLA2G6|pc|chr22:38180324:38180404:-	0	-
#Deleted in new
chr22	38192032	38192100	ENSG00000184381.18|PLA2G6|pc|chr22:38192032:38192100:-	0	-
#Deleted in new
chr2	238224551	238224873	ENSG00000186235.10|AC016757.1|lncRNA|chr2:238224551:238224873:-	0	-
#Deleted in new
chr2	238225112	238225499	ENSG00000186235.10|AC016757.1|lncRNA|chr2:238225112:238225499:-	0	-
#Deleted in new
chr2	238225115	238225499	ENSG00000186235.10|AC016757.1|lncRNA|chr2:238225115:238225499:-	0	-
#Partially deleted in new
chr2	238225119	238226612	ENSG00000186235.10|AC016757.1|lncRNA|chr2:238225119:238226612:-	0	-
#Deleted in new
chr2	238229315	238229668	ENSG00000186235.10|AC016757.1|lncRNA|chr2:238229315:238229668:-	0	-
#Deleted in new
chr2	238231200	238231431	ENSG00000186235.10|AC016757.1|lncRNA|chr2:238231200:238231431:-	0	-
#Partially deleted in new
chr22	38231319	38231415	ENSG00000235246.1|AL020993.1|lncRNA|chr22:38231319:38231415:+	0	+
#Deleted in new
chr2	238231333	238231370	ENSG00000186235.10|AC016757.1|lncRNA|chr2:238231333:238231370:-	0	-
#Deleted in new
chr2	238231333	238231525	ENSG00000186235.10|AC016757.1|lncRNA|chr2:238231333:238231525:-	0	-
#Deleted in new
chr2	238231333	238231585	ENSG00000186235.10|AC016757.1|lncRNA|chr2:238231333:238231585:-	0	-
#Deleted in new
chr2	238231333	238231613	ENSG00000186235.10|AC016757.1|lncRNA|chr2:238231333:238231613:-	0	-
#Deleted in new
chr2	238231333	238231677	ENSG00000186235.10|AC016757.1|lncRNA|chr2:238231333:238231677:-	0	-
#Deleted in new
chr22	38232047	38232248	ENSG00000235246.1|AL020993.1|lncRNA|chr22:38232047:38232248:+	0	+
#Deleted in new
chr2	238234455	238234627	ENSG00000225057.2|AC012485.1|lncRNA|chr2:238234455:238234627:+	0	+
#Deleted in new
chr2	238235930	238235997	ENSG00000225057.2|AC012485.1|lncRNA|chr2:238235930:238235997:+	0	+
#Deleted in new
chr22	38239405	38239502	ENSG00000198792.12|TMEM184B|pc|chr22:38239405:38239502:-	0	-
#Deleted in new
chr2	238247224	238247517	ENSG00000225057.2|AC012485.1|lncRNA|chr2:238247224:238247517:+	0	+
#Deleted in new
chr2	238254187	238254312	ENSG00000225057.2|AC012485.1|lncRNA|chr2:238254187:238254312:+	0	+
#Partially deleted in new
chr2	238261440	238261837	ENSG00000132326.11|PER2|pc|chr2:238261440:238261837:-	0	-
#Partially deleted in new
chr22	38291929	38292543	ENSG00000213923.11|CSNK1E|pc|chr22:38291929:38292543:-	0	-
#Deleted in new
chr2	238295391	238295740	ENSG00000232306.2|AC012485.2|lncRNA|chr2:238295391:238295740:-	0	-
#Deleted in new
chr2	238295732	238295835	ENSG00000283635.1|AC012485.3|lncRNA|chr2:238295732:238295835:+	0	+
#Deleted in new
chr2	238298376	238298497	ENSG00000283635.1|AC012485.3|lncRNA|chr2:238298376:238298497:+	0	+
#Deleted in new
chr2	23832207	23832602	ENSG00000119778.14|ATAD2B|pc|chr2:23832207:23832602:-	0	-
#Deleted in new
chr2	23832207	23832611	ENSG00000119778.14|ATAD2B|pc|chr2:23832207:23832611:-	0	-
#Deleted in new
chr22	38336607	38336706	ENSG00000283900.1|Z98749.3|pc|chr22:38336607:38336706:-	0	-
#Deleted in new
chr22	38380369	38380423	ENSG00000283900.1|Z98749.3|pc|chr22:38380369:38380423:-	0	-
#Deleted in new
chr22	38380936	38380990	ENSG00000283900.1|Z98749.3|pc|chr22:38380936:38380990:-	0	-
#Deleted in new
chr22	38387917	38388278	ENSG00000229955.1|Z98749.1|lncRNA|chr22:38387917:38388278:-	0	-
#Partially deleted in new
chr22	38388677	38388857	ENSG00000229955.1|Z98749.1|lncRNA|chr22:38388677:38388857:-	0	-
#Deleted in new
chr22	38398437	38398522	ENSG00000283900.1|Z98749.3|pc|chr22:38398437:38398522:-	0	-
#Deleted in new
chr22	38424812	38424972	ENSG00000228620.1|Z97056.1|lncRNA|chr22:38424812:38424972:+	0	+
#Partially deleted in new
chr2	238433312	238433447	ENSG00000065802.11|ASB1|pc|chr2:238433312:238433447:+	0	+
#Partially deleted in new
chr22	38493360	38493771	ENSG00000100201.20|DDX17|pc|chr22:38493360:38493771:-	0	-
#Deleted in new
chr22	38505164	38505249	ENSG00000100201.20|DDX17|pc|chr22:38505164:38505249:-	0	-
#Deleted in new
chr22	38507590	38507660	ENSG00000100201.20|DDX17|pc|chr22:38507590:38507660:-	0	-
#Deleted in new
chr2	238551410	238551547	ENSG00000225493.1|LINC01107|lncRNA|chr2:238551410:238551547:-	0	-
#Deleted in new
chr2	238554473	238555054	ENSG00000225493.1|LINC01107|lncRNA|chr2:238554473:238555054:-	0	-
#Deleted in new
chr2	23856008	23856442	ENSG00000119778.14|ATAD2B|pc|chr2:23856008:23856442:-	0	-
#Deleted in new
chr22	38578119	38586199	ENSG00000184949.15|FAM227A|pc|chr22:38578119:38586199:-	0	-
#Deleted in new
chr22	38582168	38582401	ENSG00000184949.15|FAM227A|pc|chr22:38582168:38582401:-	0	-
#Deleted in new
chr22	38582861	38582917	ENSG00000184949.15|FAM227A|pc|chr22:38582861:38582917:-	0	-
#Deleted in new
chr22	38582861	38583044	ENSG00000184949.15|FAM227A|pc|chr22:38582861:38583044:-	0	-
#Deleted in new
chr22	38586023	38586199	ENSG00000184949.15|FAM227A|pc|chr22:38586023:38586199:-	0	-
#Deleted in new
chr22	38586064	38586145	ENSG00000184949.15|FAM227A|pc|chr22:38586064:38586145:-	0	-
#Deleted in new
chr22	38586064	38586199	ENSG00000184949.15|FAM227A|pc|chr22:38586064:38586199:-	0	-
#Deleted in new
chr22	38607388	38607476	ENSG00000184949.15|FAM227A|pc|chr22:38607388:38607476:-	0	-
#Deleted in new
chr22	38618395	38618543	ENSG00000184949.15|FAM227A|pc|chr22:38618395:38618543:-	0	-
#Deleted in new
chr22	38653809	38653853	ENSG00000184949.15|FAM227A|pc|chr22:38653809:38653853:-	0	-
#Deleted in new
chr22	38665545	38665685	ENSG00000100211.10|CBY1|pc|chr22:38665545:38665685:+	0	+
#Deleted in new
chr22	38665594	38665685	ENSG00000100211.10|CBY1|pc|chr22:38665594:38665685:+	0	+
#Deleted in new
chr22	38666507	38666736	ENSG00000230912.1|AL021707.4|lncRNA|chr22:38666507:38666736:-	0	-
#Deleted in new
chr22	38667568	38667662	ENSG00000100211.10|CBY1|pc|chr22:38667568:38667662:+	0	+
#Deleted in new
chr22	38668569	38668750	ENSG00000230912.1|AL021707.4|lncRNA|chr22:38668569:38668750:-	0	-
#Deleted in new
chr22	38669687	38670303	ENSG00000228274.3|AL021707.2|lncRNA|chr22:38669687:38670303:-	0	-
#Deleted in new
chr22	38675813	38676489	ENSG00000228274.3|AL021707.2|lncRNA|chr22:38675813:38676489:-	0	-
#Deleted in new
chr2	238720323	238720421	ENSG00000234279.1|LINC01937|lncRNA|chr2:238720323:238720421:+	0	+
#Deleted in new
chr22	38725175	38725440	ENSG00000100226.15|GTPBP1|pc|chr22:38725175:38725440:+	0	+
#Deleted in new
chr22	38734323	38734397	ENSG00000100226.15|GTPBP1|pc|chr22:38734323:38734397:+	0	+
#Deleted in new
chr22	38734324	38734397	ENSG00000100226.15|GTPBP1|pc|chr22:38734324:38734397:+	0	+
#Deleted in new
chr22	38736609	38736792	ENSG00000273096.1|AL021707.8|lncRNA|chr22:38736609:38736792:-	0	-
#Deleted in new
chr2	238740325	238740780	ENSG00000234279.1|LINC01937|lncRNA|chr2:238740325:238740780:+	0	+
#Deleted in new
chr22	38743494	38743910	ENSG00000273076.1|AL021707.7|lncRNA|chr22:38743494:38743910:+	0	+
#Deleted in new
chr22	38766233	38766333	ENSG00000100242.15|SUN2|pc|chr22:38766233:38766333:-	0	-
#Deleted in new
chr2	23883593	23883635	ENSG00000119778.14|ATAD2B|pc|chr2:23883593:23883635:-	0	-
#Deleted in new
chr2	238886778	238887252	ENSG00000233608.3|TWIST2|pc|chr2:238886778:238887252:+	0	+
#Deleted in new
chr2	238919301	238919516	ENSG00000227744.4|LINC01940|lncRNA|chr2:238919301:238919516:-	0	-
#Deleted in new
chr2	238919727	238919847	ENSG00000227744.4|LINC01940|lncRNA|chr2:238919727:238919847:-	0	-
#Deleted in new
chr2	238920487	238920580	ENSG00000227744.4|LINC01940|lncRNA|chr2:238920487:238920580:-	0	-
#Deleted in new
chr22	38921226	38921312	ENSG00000235209.1|AL022318.1|lncRNA|chr22:38921226:38921312:+	0	+
#Deleted in new
chr2	238921382	238921476	ENSG00000227744.4|LINC01940|lncRNA|chr2:238921382:238921476:-	0	-
#Deleted in new
chr2	238921609	238921871	ENSG00000227744.4|LINC01940|lncRNA|chr2:238921609:238921871:-	0	-
#Deleted in new
chr2	238921995	238922338	ENSG00000227744.4|LINC01940|lncRNA|chr2:238921995:238922338:-	0	-
#Deleted in new
chr2	238923072	238924390	ENSG00000227744.4|LINC01940|lncRNA|chr2:238923072:238924390:-	0	-
#Deleted in new
chr22	38924116	38924708	ENSG00000235209.1|AL022318.1|lncRNA|chr22:38924116:38924708:+	0	+
#Deleted in new
chr2	238924857	238925687	ENSG00000227744.4|LINC01940|lncRNA|chr2:238924857:238925687:-	0	-
#Deleted in new
chr2	238925937	238926120	ENSG00000227744.4|LINC01940|lncRNA|chr2:238925937:238926120:-	0	-
#Deleted in new
chr2	238926238	238926269	ENSG00000227744.4|LINC01940|lncRNA|chr2:238926238:238926269:-	0	-
#Deleted in new
chr22	38952740	38952850	ENSG00000128383.12|APOBEC3A|pc|chr22:38952740:38952850:+	0	+
#Deleted in new
chr22	38952750	38952850	ENSG00000128383.12|APOBEC3A|pc|chr22:38952750:38952850:+	0	+
#Deleted in new
chr22	38952960	38953416	ENSG00000128383.12|APOBEC3A|pc|chr22:38952960:38953416:+	0	+
#Deleted in new
chr22	38957521	38957720	ENSG00000128383.12|APOBEC3A|pc|chr22:38957521:38957720:+	0	+
#Deleted in new
chr22	38957587	38957720	ENSG00000128383.12|APOBEC3A|pc|chr22:38957587:38957720:+	0	+
#Deleted in new
chr22	38962494	38963183	ENSG00000128383.12|APOBEC3A|pc|chr22:38962494:38963183:+	0	+
#Deleted in new
chr22	38982346	38982470	ENSG00000179750.15|APOBEC3B|pc|chr22:38982346:38982470:+	0	+
#Deleted in new
chr22	38982398	38982470	ENSG00000179750.15|APOBEC3B|pc|chr22:38982398:38982470:+	0	+
#Deleted in new
chr22	38982405	38982470	ENSG00000179750.15|APOBEC3B|pc|chr22:38982405:38982470:+	0	+
#Deleted in new
chr22	38982408	38982470	ENSG00000179750.15|APOBEC3B|pc|chr22:38982408:38982470:+	0	+
#Deleted in new
chr22	38984074	38984231	ENSG00000179750.15|APOBEC3B|pc|chr22:38984074:38984231:+	0	+
#Deleted in new
chr22	38989456	38989610	ENSG00000179750.15|APOBEC3B|pc|chr22:38989456:38989610:+	0	+
#Partially deleted in new
chr22	38992033	38992804	ENSG00000179750.15|APOBEC3B|pc|chr22:38992033:38992804:+	0	+
#Deleted in new
chr22	38992397	38992581	ENSG00000249310.2|APOBEC3B-AS1|lncRNA|chr22:38992397:38992581:-	0	-
#Deleted in new
chr22	38992430	38992546	ENSG00000179750.15|APOBEC3B|pc|chr22:38992430:38992546:+	0	+
#Deleted in new
chr22	38992430	38992761	ENSG00000179750.15|APOBEC3B|pc|chr22:38992430:38992761:+	0	+
#Deleted in new
chr22	38992430	38992778	ENSG00000128383.12|APOBEC3A|pc|chr22:38992430:38992778:+	0	+
#Deleted in new
chr22	38992430	38992784	ENSG00000179750.15|APOBEC3B|pc|chr22:38992430:38992784:+	0	+
#Deleted in new
chr22	38992937	38993003	ENSG00000249310.2|APOBEC3B-AS1|lncRNA|chr22:38992937:38993003:-	0	-
#Deleted in new
chr22	38997480	38997737	ENSG00000249310.2|APOBEC3B-AS1|lncRNA|chr22:38997480:38997737:-	0	-
#Deleted in new
chr22	38998085	38998209	ENSG00000249310.2|APOBEC3B-AS1|lncRNA|chr22:38998085:38998209:-	0	-
#Partially deleted in new
chr22	39018268	39018926	ENSG00000244509.3|APOBEC3C|pc|chr22:39018268:39018926:+	0	+
#Partially deleted in new
chr22	39018268	39020352	ENSG00000244509.3|APOBEC3C|pc|chr22:39018268:39020352:+	0	+
#Deleted in new
chr22	39021112	39021536	ENSG00000243811.8|APOBEC3D|pc|chr22:39021112:39021536:+	0	+
#Deleted in new
chr22	39021501	39021536	ENSG00000284554.1|AL022318.4|pc|chr22:39021501:39021536:+	0	+
#Deleted in new
chr22	39022821	39023014	ENSG00000243811.8|APOBEC3D|pc|chr22:39022821:39023014:+	0	+
#Deleted in new
chr22	39022821	39023014	ENSG00000284554.1|AL022318.4|pc|chr22:39022821:39023014:+	0	+
#Deleted in new
chr22	39029362	39029519	ENSG00000243811.8|APOBEC3D|pc|chr22:39029362:39029519:+	0	+
#Deleted in new
chr22	39029362	39029519	ENSG00000284554.1|AL022318.4|pc|chr22:39029362:39029519:+	0	+
#Partially deleted in new
chr22	39032197	39033261	ENSG00000243811.8|APOBEC3D|pc|chr22:39032197:39033261:+	0	+
#Partially deleted in new
chr22	39032197	39033276	ENSG00000243811.8|APOBEC3D|pc|chr22:39032197:39033276:+	0	+
#Partially deleted in new
chr22	39032197	39033276	ENSG00000284554.1|AL022318.4|pc|chr22:39032197:39033276:+	0	+
#Deleted in new
chr22	39040603	39040767	ENSG00000128394.16|APOBEC3F|pc|chr22:39040603:39040767:+	0	+
#Deleted in new
chr22	39040603	39040977	ENSG00000128394.16|APOBEC3F|pc|chr22:39040603:39040977:+	0	+
#Deleted in new
chr22	39040856	39040977	ENSG00000128394.16|APOBEC3F|pc|chr22:39040856:39040977:+	0	+
#Deleted in new
chr22	39042936	39043090	ENSG00000128394.16|APOBEC3F|pc|chr22:39042936:39043090:+	0	+
#Deleted in new
chr22	39044082	39044423	ENSG00000128394.16|APOBEC3F|pc|chr22:39044082:39044423:+	0	+
#Deleted in new
chr22	39049424	39049581	ENSG00000128394.16|APOBEC3F|pc|chr22:39049424:39049581:+	0	+
#Partially deleted in new
chr22	39052576	39053910	ENSG00000128394.16|APOBEC3F|pc|chr22:39052576:39053910:+	0	+
#Deleted in new
chr2	239055183	239055340	ENSG00000068024.16|HDAC4|pc|chr2:239055183:239055340:-	0	-
#Deleted in new
chr22	39077004	39077378	ENSG00000239713.8|APOBEC3G|pc|chr22:39077004:39077378:+	0	+
#Deleted in new
chr22	39077066	39077378	ENSG00000239713.8|APOBEC3G|pc|chr22:39077066:39077378:+	0	+
#Deleted in new
chr22	39077078	39077378	ENSG00000239713.8|APOBEC3G|pc|chr22:39077078:39077378:+	0	+
#Deleted in new
chr22	39077083	39077168	ENSG00000239713.8|APOBEC3G|pc|chr22:39077083:39077168:+	0	+
#Deleted in new
chr22	39078511	39078638	ENSG00000239713.8|APOBEC3G|pc|chr22:39078511:39078638:+	0	+
#Deleted in new
chr22	39078931	39079085	ENSG00000239713.8|APOBEC3G|pc|chr22:39078931:39079085:+	0	+
#Deleted in new
chr22	39078931	39079700	ENSG00000239713.8|APOBEC3G|pc|chr22:39078931:39079700:+	0	+
#Partially deleted in new
chr22	39079661	39081227	ENSG00000239713.8|APOBEC3G|pc|chr22:39079661:39081227:+	0	+
#Partially deleted in new
chr22	39081470	39082679	ENSG00000239713.8|APOBEC3G|pc|chr22:39081470:39082679:+	0	+
#Partially deleted in new
chr22	39081470	39083214	ENSG00000239713.8|APOBEC3G|pc|chr22:39081470:39083214:+	0	+
#Deleted in new
chr22	39087406	39087743	ENSG00000239713.8|APOBEC3G|pc|chr22:39087406:39087743:+	0	+
#Deleted in new
chr2	239091143	239091894	ENSG00000068024.16|HDAC4|pc|chr2:239091143:239091894:-	0	-
#Deleted in new
chr22	39097223	39097343	ENSG00000100298.15|APOBEC3H|pc|chr22:39097223:39097343:+	0	+
#Deleted in new
chr22	39097270	39097343	ENSG00000100298.15|APOBEC3H|pc|chr22:39097270:39097343:+	0	+
#Deleted in new
chr22	39097274	39097343	ENSG00000100298.15|APOBEC3H|pc|chr22:39097274:39097343:+	0	+
#Deleted in new
chr22	39097284	39097343	ENSG00000100298.15|APOBEC3H|pc|chr22:39097284:39097343:+	0	+
#Deleted in new
chr22	39102511	39102558	ENSG00000100298.15|APOBEC3H|pc|chr22:39102511:39102558:+	0	+
#Deleted in new
chr22	39102511	39102571	ENSG00000100298.15|APOBEC3H|pc|chr22:39102511:39102571:+	0	+
#Deleted in new
chr22	39102511	39102605	ENSG00000100298.15|APOBEC3H|pc|chr22:39102511:39102605:+	0	+
#Partially deleted in new
chr22	39103688	39104067	ENSG00000100298.15|APOBEC3H|pc|chr22:39103688:39104067:+	0	+
#Partially deleted in new
chr22	39103691	39104067	ENSG00000100298.15|APOBEC3H|pc|chr22:39103691:39104067:+	0	+
#Deleted in new
chr2	239140877	239140973	ENSG00000068024.16|HDAC4|pc|chr2:239140877:239140973:-	0	-
#Deleted in new
chr2	239154617	239155013	ENSG00000068024.16|HDAC4|pc|chr2:239154617:239155013:-	0	-
#Deleted in new
chr2	239155480	239155575	ENSG00000068024.16|HDAC4|pc|chr2:239155480:239155575:-	0	-
#Partially deleted in new
chr2	239186487	239187160	ENSG00000068024.16|HDAC4|pc|chr2:239186487:239187160:-	0	-
#Deleted in new
chr22	39240854	39240909	ENSG00000100311.16|PDGFB|pc|chr22:39240854:39240909:-	0	-
#Partially deleted in new
chr22	39276575	39278123	ENSG00000284633.1|AL031590.1|lncRNA|chr22:39276575:39278123:+	0	+
#Deleted in new
chr22	39295328	39295589	ENSG00000224794.2|AL022326.1|lncRNA|chr22:39295328:39295589:+	0	+
#Partially deleted in new
chr22	39314149	39314408	ENSG00000100316.15|RPL3|pc|chr22:39314149:39314408:-	0	-
#Partially deleted in new
chr22	39317854	39318592	ENSG00000100316.15|RPL3|pc|chr22:39317854:39318592:-	0	-
#Deleted in new
chr2	23939539	23939662	ENSG00000173960.13|UBXN2A|pc|chr2:23939539:23939662:+	0	+
#Deleted in new
chr2	23940418	23940648	ENSG00000173960.13|UBXN2A|pc|chr2:23940418:23940648:+	0	+
#Deleted in new
chr22	39436489	39436823	ENSG00000100324.13|TAB1|pc|chr22:39436489:39436823:+	0	+
#Deleted in new
chr22	39436489	39437060	ENSG00000100324.13|TAB1|pc|chr22:39436489:39437060:+	0	+
#Deleted in new
chr22	39472787	39472872	ENSG00000128268.11|MGAT3|pc|chr22:39472787:39472872:+	0	+
#Deleted in new
chr22	39486165	39486248	ENSG00000128268.11|MGAT3|pc|chr22:39486165:39486248:+	0	+
#Deleted in new
chr22	39501677	39501724	ENSG00000100335.13|MIEF1|pc|chr22:39501677:39501724:+	0	+
#Deleted in new
chr22	39501730	39502020	ENSG00000100335.13|MIEF1|pc|chr22:39501730:39502020:+	0	+
#Deleted in new
chr22	39503456	39503520	ENSG00000100335.13|MIEF1|pc|chr22:39503456:39503520:+	0	+
#Deleted in new
chr22	39509337	39509571	ENSG00000100335.13|MIEF1|pc|chr22:39509337:39509571:+	0	+
#Deleted in new
chr22	39509421	39509571	ENSG00000100335.13|MIEF1|pc|chr22:39509421:39509571:+	0	+
#Deleted in new
chr22	39519694	39519801	ENSG00000128272.14|ATF4|pc|chr22:39519694:39519801:+	0	+
#Partially deleted in new
chr22	39529819	39532093	ENSG00000187051.8|RPS19BP1|pc|chr22:39529819:39532093:-	0	-
#Deleted in new
chr22	39530463	39530554	ENSG00000187051.8|RPS19BP1|pc|chr22:39530463:39530554:-	0	-
#Partially deleted in new
chr22	39531728	39532523	ENSG00000187051.8|RPS19BP1|pc|chr22:39531728:39532523:-	0	-
#Deleted in new
chr2	239560	242176	ENSG00000035115.21|SH3YL1|pc|chr2:239560:242176:-	0	-
#Deleted in new
chr2	239578300	239578924	ENSG00000196758.3|AC079612.1|lncRNA|chr2:239578300:239578924:+	0	+
#Deleted in new
chr2	239625697	239625783	ENSG00000227459.1|AC079612.2|lncRNA|chr2:239625697:239625783:+	0	+
#Deleted in new
chr2	23968918	23969035	ENSG00000173960.13|UBXN2A|pc|chr2:23968918:23969035:+	0	+
#Deleted in new
chr2	239734955	239735538	ENSG00000259889.1|AC093802.2|lncRNA|chr2:239734955:239735538:+	0	+
#Deleted in new
chr2	239762859	239762932	ENSG00000220256.3|AC093802.1|lncRNA|chr2:239762859:239762932:+	0	+
#Deleted in new
chr2	239780303	239780425	ENSG00000220256.3|AC093802.1|lncRNA|chr2:239780303:239780425:+	0	+
#Partially deleted in new
chr2	239799840	239802883	ENSG00000220256.3|AC093802.1|lncRNA|chr2:239799840:239802883:+	0	+
#Deleted in new
chr2	239892449	239892707	ENSG00000130414.11|NDUFA10|pc|chr2:239892449:239892707:-	0	-
#Deleted in new
chr2	239895204	239895314	ENSG00000130414.11|NDUFA10|pc|chr2:239895204:239895314:-	0	-
#Partially deleted in new
chr2	239957371	239961186	ENSG00000130414.11|NDUFA10|pc|chr2:239957371:239961186:-	0	-
#Deleted in new
chr2	239958536	239959037	ENSG00000130414.11|NDUFA10|pc|chr2:239958536:239959037:-	0	-
#Duplicated in new
chr22	39963919	39964718	ENSG00000225528.3|Z82206.1|pc|chr22:39963919:39964718:+	0	+
#Deleted in new
chr2	239969451	239969762	ENSG00000130414.11|NDUFA10|pc|chr2:239969451:239969762:-	0	-
#Deleted in new
chr2	239973515	239973661	ENSG00000130414.11|NDUFA10|pc|chr2:239973515:239973661:-	0	-
#Deleted in new
chr2	239976504	239976585	ENSG00000130414.11|NDUFA10|pc|chr2:239976504:239976585:-	0	-
#Deleted in new
chr2	239982114	239982219	ENSG00000130414.11|NDUFA10|pc|chr2:239982114:239982219:-	0	-
#Partially deleted in new
chr22	39997898	39997959	ENSG00000133477.16|FAM83F|pc|chr22:39997898:39997959:+	0	+
#Partially deleted in new
chr2	240011616	240014860	ENSG00000130414.11|NDUFA10|pc|chr2:240011616:240014860:-	0	-
#Deleted in new
chr2	240126562	240126940	ENSG00000172428.10|COPS9|pc|chr2:240126562:240126940:-	0	-
#Deleted in new
chr2	240129910	240130028	ENSG00000172428.10|COPS9|pc|chr2:240129910:240130028:-	0	-
#Deleted in new
chr2	240144523	240144562	ENSG00000178602.7|OTOS|pc|chr2:240144523:240144562:-	0	-
#Deleted in new
chr2	240227559	240227711	ENSG00000227479.1|AC124861.1|lncRNA|chr2:240227559:240227711:-	0	-
#Partially deleted in new
chr2	24025431	24026775	ENSG00000205639.10|MFSD2B|pc|chr2:24025431:24026775:+	0	+
#Deleted in new
chr2	24033166	24033257	ENSG00000205639.10|MFSD2B|pc|chr2:24033166:24033257:+	0	+
#Deleted in new
chr22	40347303	40347352	ENSG00000239900.12|ADSL|pc|chr22:40347303:40347352:+	0	+
#Deleted in new
chr22	40348396	40348646	ENSG00000284431.1|AL022238.4|pc|chr22:40348396:40348646:+	0	+
#Deleted in new
chr22	40348638	40348928	ENSG00000239900.12|ADSL|pc|chr22:40348638:40348928:+	0	+
#Deleted in new
chr22	40353332	40353419	ENSG00000239900.12|ADSL|pc|chr22:40353332:40353419:+	0	+
#Partially deleted in new
chr22	40366435	40369367	ENSG00000239900.12|ADSL|pc|chr22:40366435:40369367:+	0	+
#Deleted in new
chr22	40367468	40368038	ENSG00000239900.12|ADSL|pc|chr22:40367468:40368038:+	0	+
#Deleted in new
chr22	40367468	40368105	ENSG00000239900.12|ADSL|pc|chr22:40367468:40368105:+	0	+
#Partially deleted in new
chr22	40373345	40373535	ENSG00000239900.12|ADSL|pc|chr22:40373345:40373535:+	0	+
#Deleted in new
chr22	40376263	40376515	ENSG00000229999.6|AL022238.2|lncRNA|chr22:40376263:40376515:-	0	-
#Deleted in new
chr22	40378169	40378263	ENSG00000229999.6|AL022238.2|lncRNA|chr22:40378169:40378263:-	0	-
#Deleted in new
chr22	40379351	40379466	ENSG00000229999.6|AL022238.2|lncRNA|chr22:40379351:40379466:-	0	-
#Deleted in new
chr22	40387218	40387476	ENSG00000239900.12|ADSL|pc|chr22:40387218:40387476:+	0	+
#Deleted in new
chr22	40387218	40387489	ENSG00000239900.12|ADSL|pc|chr22:40387218:40387489:+	0	+
#Deleted in new
chr22	40390229	40390463	ENSG00000239900.12|ADSL|pc|chr22:40390229:40390463:+	0	+
#Deleted in new
chr2	240449314	240449921	ENSG00000218416.4|PP14571|lncRNA|chr2:240449314:240449921:-	0	-
#Deleted in new
chr2	240449417	240449921	ENSG00000218416.4|PP14571|lncRNA|chr2:240449417:240449921:-	0	-
#Deleted in new
chr2	240519754	240520109	ENSG00000144504.15|ANKMY1|pc|chr2:240519754:240520109:-	0	-
#Deleted in new
chr22	40521799	40522973	ENSG00000232564.3|AL031594.1|lncRNA|chr22:40521799:40522973:+	0	+
#Partially deleted in new
chr2	240521937	240524381	ENSG00000144504.15|ANKMY1|pc|chr2:240521937:240524381:-	0	-
#Partially deleted in new
chr2	240521938	240524381	ENSG00000144504.15|ANKMY1|pc|chr2:240521938:240524381:-	0	-
#Deleted in new
chr22	40523365	40523440	ENSG00000232564.3|AL031594.1|lncRNA|chr22:40523365:40523440:+	0	+
#Deleted in new
chr22	40523524	40523718	ENSG00000232564.3|AL031594.1|lncRNA|chr22:40523524:40523718:+	0	+
#Deleted in new
chr22	40526218	40526707	ENSG00000232564.3|AL031594.1|lncRNA|chr22:40526218:40526707:+	0	+
#Deleted in new
chr2	240532075	240532135	ENSG00000144504.15|ANKMY1|pc|chr2:240532075:240532135:-	0	-
#Deleted in new
chr2	240557189	240557352	ENSG00000144504.15|ANKMY1|pc|chr2:240557189:240557352:-	0	-
#Deleted in new
chr2	240557189	240557406	ENSG00000144504.15|ANKMY1|pc|chr2:240557189:240557406:-	0	-
#Deleted in new
chr2	240557880	240557962	ENSG00000144504.15|ANKMY1|pc|chr2:240557880:240557962:-	0	-
#Deleted in new
chr2	240557880	240557963	ENSG00000144504.15|ANKMY1|pc|chr2:240557880:240557963:-	0	-
#Deleted in new
chr2	240557880	240557974	ENSG00000144504.15|ANKMY1|pc|chr2:240557880:240557974:-	0	-
#Partially deleted in new
chr2	240557880	240558002	ENSG00000144504.15|ANKMY1|pc|chr2:240557880:240558002:-	0	-
#Partially deleted in new
chr2	240557880	240558021	ENSG00000144504.15|ANKMY1|pc|chr2:240557880:240558021:-	0	-
#Deleted in new
chr2	240558303	240558619	ENSG00000144504.15|ANKMY1|pc|chr2:240558303:240558619:-	0	-
#Split in new
chr2	240561329	240564014	ENSG00000188542.9|DUSP28|pc|chr2:240561329:240564014:+	0	+
#Duplicated in new
chr2	240562486	240562596	ENSG00000188542.9|DUSP28|pc|chr2:240562486:240562596:+	0	+
#Deleted in new
chr2	240565803	240565941	ENSG00000142327.12|RNPEPL1|pc|chr2:240565803:240565941:+	0	+
#Partially deleted in new
chr2	240592478	240592878	ENSG00000142330.19|CAPN10|pc|chr2:240592478:240592878:+	0	+
#Deleted in new
chr2	240607206	240607520	ENSG00000142330.19|CAPN10|pc|chr2:240607206:240607520:+	0	+
#Deleted in new
chr2	240616387	240616511	ENSG00000142330.19|CAPN10|pc|chr2:240616387:240616511:+	0	+
#Deleted in new
chr2	240616387	240616511	ENSG00000178623.11|GPR35|pc|chr2:240616387:240616511:+	0	+
#Deleted in new
chr2	240616975	240617705	ENSG00000142330.19|CAPN10|pc|chr2:240616975:240617705:+	0	+
#Deleted in new
chr2	240617089	240617393	ENSG00000178623.11|GPR35|pc|chr2:240617089:240617393:+	0	+
#Deleted in new
chr2	240617203	240617393	ENSG00000178623.11|GPR35|pc|chr2:240617203:240617393:+	0	+
#Partially deleted in new
chr2	240677598	240679781	ENSG00000185176.12|AQP12B|pc|chr2:240677598:240679781:-	0	-
#Deleted in new
chr2	240678922	240679022	ENSG00000185176.12|AQP12B|pc|chr2:240678922:240679022:-	0	-
#Deleted in new
chr2	240686333	240687821	ENSG00000219159.4|AC011298.1|lncRNA|chr2:240686333:240687821:+	0	+
#Deleted in new
chr2	240688415	240688512	ENSG00000219159.4|AC011298.1|lncRNA|chr2:240688415:240688512:+	0	+
#Deleted in new
chr2	240688601	240690414	ENSG00000219159.4|AC011298.1|lncRNA|chr2:240688601:240690414:+	0	+
#Deleted in new
chr2	240695878	240695978	ENSG00000184945.13|AQP12A|pc|chr2:240695878:240695978:+	0	+
#Deleted in new
chr2	240696974	240697302	ENSG00000184945.13|AQP12A|pc|chr2:240696974:240697302:+	0	+
#Deleted in new
chr2	240748664	240748718	ENSG00000130294.15|KIF1A|pc|chr2:240748664:240748718:-	0	-
#Partially deleted in new
chr2	24076525	24076615	ENSG00000219626.8|FAM228B|pc|chr2:24076525:24076615:+	0	+
#Deleted in new
chr2	24076857	24076969	ENSG00000219626.8|FAM228B|pc|chr2:24076857:24076969:+	0	+
#Deleted in new
chr2	24076881	24076969	ENSG00000219626.8|FAM228B|pc|chr2:24076881:24076969:+	0	+
#Deleted in new
chr2	24076927	24076969	ENSG00000219626.8|FAM228B|pc|chr2:24076927:24076969:+	0	+
#Deleted in new
chr22	40784512	40784604	ENSG00000100372.14|SLC25A17|pc|chr22:40784512:40784604:-	0	-
#Deleted in new
chr2	240797934	240798033	ENSG00000130294.15|KIF1A|pc|chr2:240797934:240798033:-	0	-
#Deleted in new
chr22	40799560	40799671	ENSG00000100372.14|SLC25A17|pc|chr22:40799560:40799671:-	0	-
#Deleted in new
chr22	40832086	40832216	ENSG00000100380.13|ST13|pc|chr22:40832086:40832216:-	0	-
#Partially deleted in new
chr2	24084188	24085181	ENSG00000115129.13|TP53I3|pc|chr2:24084188:24085181:-	0	-
#Deleted in new
chr2	24084730	24085215	ENSG00000115129.13|TP53I3|pc|chr2:24084730:24085215:-	0	-
#Deleted in new
chr2	24084748	24084860	ENSG00000115129.13|TP53I3|pc|chr2:24084748:24084860:-	0	-
#Deleted in new
chr2	24085656	24085861	ENSG00000115129.13|TP53I3|pc|chr2:24085656:24085861:-	0	-
#Deleted in new
chr22	40860677	40860781	ENSG00000196236.12|XPNPEP3|pc|chr22:40860677:40860781:+	0	+
#Deleted in new
chr22	40860677	40860793	ENSG00000196236.12|XPNPEP3|pc|chr22:40860677:40860793:+	0	+
#Partially deleted in new
chr22	40862265	40862679	ENSG00000196236.12|XPNPEP3|pc|chr22:40862265:40862679:+	0	+
#Deleted in new
chr2	24087265	24087384	ENSG00000219626.8|FAM228B|pc|chr2:24087265:24087384:+	0	+
#Deleted in new
chr2	24095140	24095229	ENSG00000219626.8|FAM228B|pc|chr2:24095140:24095229:+	0	+
#Deleted in new
chr2	24095140	24097468	ENSG00000219626.8|FAM228B|pc|chr2:24095140:24097468:+	0	+
#Deleted in new
chr2	24095147	24097452	ENSG00000219626.8|FAM228B|pc|chr2:24095147:24097452:+	0	+
#Partially deleted in new
chr2	240954616	240955499	ENSG00000233392.5|AC104809.2|lncRNA|chr2:240954616:240955499:-	0	-
#Deleted in new
chr2	240955023	240955315	ENSG00000233392.5|AC104809.2|lncRNA|chr2:240955023:240955315:-	0	-
#Deleted in new
chr2	240956369	240956460	ENSG00000233392.5|AC104809.2|lncRNA|chr2:240956369:240956460:-	0	-
#Deleted in new
chr2	240957361	240957617	ENSG00000233392.5|AC104809.2|lncRNA|chr2:240957361:240957617:-	0	-
#Partially deleted in new
chr22	40966200	40967884	ENSG00000100387.8|RBX1|pc|chr22:40966200:40967884:+	0	+
#Deleted in new
chr2	240985898	240986072	ENSG00000223991.1|AC104809.1|lncRNA|chr2:240985898:240986072:-	0	-
#Deleted in new
chr2	241015598	241016017	ENSG00000225521.1|AC005237.1|lncRNA|chr2:241015598:241016017:-	0	-
#Deleted in new
chr2	241035533	241035675	ENSG00000162804.13|SNED1|pc|chr2:241035533:241035675:+	0	+
#Deleted in new
chr2	241075053	241075682	ENSG00000122085.16|MTERF4|pc|chr2:241075053:241075682:-	0	-
#Deleted in new
chr2	241089979	241090044	ENSG00000122085.16|MTERF4|pc|chr2:241089979:241090044:-	0	-
#Deleted in new
chr2	241090005	241090044	ENSG00000122085.16|MTERF4|pc|chr2:241090005:241090044:-	0	-
#Deleted in new
chr2	241090277	241090449	ENSG00000122085.16|MTERF4|pc|chr2:241090277:241090449:-	0	-
#Deleted in new
chr2	241090302	241090449	ENSG00000122085.16|MTERF4|pc|chr2:241090302:241090449:-	0	-
#Deleted in new
chr2	241101163	241101221	ENSG00000122085.16|MTERF4|pc|chr2:241101163:241101221:-	0	-
#Deleted in new
chr22	41108024	41108098	ENSG00000100393.12|EP300|pc|chr22:41108024:41108098:+	0	+
#Deleted in new
chr2	241108466	241108807	ENSG00000115687.13|PASK|pc|chr2:241108466:241108807:-	0	-
#Deleted in new
chr2	241108466	241109780	ENSG00000115687.13|PASK|pc|chr2:241108466:241109780:-	0	-
#Deleted in new
chr2	241127707	241127759	ENSG00000115687.13|PASK|pc|chr2:241127707:241127759:-	0	-
#Partially deleted in new
chr2	241132873	241134769	ENSG00000115687.13|PASK|pc|chr2:241132873:241134769:-	0	-
#Deleted in new
chr2	241145749	241145860	ENSG00000115687.13|PASK|pc|chr2:241145749:241145860:-	0	-
#Partially deleted in new
chr22	41158467	41160419	ENSG00000100393.12|EP300|pc|chr22:41158467:41160419:+	0	+
#Deleted in new
chr2	241167044	241167172	ENSG00000115685.14|PPP1R7|pc|chr2:241167044:241167172:+	0	+
#Deleted in new
chr2	241167044	241167174	ENSG00000115685.14|PPP1R7|pc|chr2:241167044:241167174:+	0	+
#Deleted in new
chr22	41174590	41174824	ENSG00000231993.1|EP300-AS1|lncRNA|chr22:41174590:41174824:-	0	-
#Deleted in new
chr22	41183062	41183144	ENSG00000232754.1|AL035658.1|lncRNA|chr22:41183062:41183144:-	0	-
#Deleted in new
chr22	41195481	41195521	ENSG00000231993.1|EP300-AS1|lncRNA|chr22:41195481:41195521:-	0	-
#Deleted in new
chr22	41197273	41197456	ENSG00000231993.1|EP300-AS1|lncRNA|chr22:41197273:41197456:-	0	-
#Partially deleted in new
chr22	41206006	41206125	ENSG00000100395.14|L3MBTL2|pc|chr22:41206006:41206125:+	0	+
#Partially deleted in new
chr22	41208314	41208457	ENSG00000100395.14|L3MBTL2|pc|chr22:41208314:41208457:+	0	+
#Deleted in new
chr22	41217392	41217623	ENSG00000235513.1|AL035681.1|lncRNA|chr22:41217392:41217623:-	0	-
#Partially deleted in new
chr2	241224096	241225245	ENSG00000146205.13|ANO7|pc|chr2:241224096:241225245:+	0	+
#Partially deleted in new
chr2	241224096	241225376	ENSG00000146205.13|ANO7|pc|chr2:241224096:241225376:+	0	+
#Partially deleted in new
chr2	241224096	241225377	ENSG00000146205.13|ANO7|pc|chr2:241224096:241225377:+	0	+
#Partially deleted in new
chr22	41230138	41230654	ENSG00000100395.14|L3MBTL2|pc|chr22:41230138:41230654:+	0	+
#Partially deleted in new
chr22	41230138	41231270	ENSG00000100395.14|L3MBTL2|pc|chr22:41230138:41231270:+	0	+
#Partially deleted in new
chr22	41230138	41231271	ENSG00000100395.14|L3MBTL2|pc|chr22:41230138:41231271:+	0	+
#Partially deleted in new
chr2	24123117	24123319	ENSG00000176732.6|PFN4|pc|chr2:24123117:24123319:-	0	-
#Deleted in new
chr2	241243548	241243688	ENSG00000115677.16|HDLBP|pc|chr2:241243548:241243688:-	0	-
#Partially deleted in new
chr2	241250166	241250996	ENSG00000115677.16|HDLBP|pc|chr2:241250166:241250996:-	0	-
#Partially deleted in new
chr2	241269172	241269295	ENSG00000115677.16|HDLBP|pc|chr2:241269172:241269295:-	0	-
#Deleted in new
chr2	241269200	241269273	ENSG00000115677.16|HDLBP|pc|chr2:241269200:241269273:-	0	-
#Deleted in new
chr2	241269200	241269295	ENSG00000115677.16|HDLBP|pc|chr2:241269200:241269295:-	0	-
#Deleted in new
chr2	241269205	241269295	ENSG00000115677.16|HDLBP|pc|chr2:241269205:241269295:-	0	-
#Deleted in new
chr2	241269360	241269561	ENSG00000115677.16|HDLBP|pc|chr2:241269360:241269561:-	0	-
#Deleted in new
chr22	41284900	41285153	ENSG00000100401.19|RANGAP1|pc|chr22:41284900:41285153:-	0	-
#Deleted in new
chr2	241317498	241317538	ENSG00000168385.17|SEPT2|pc|chr2:241317498:241317538:+	0	+
#Deleted in new
chr2	241317498	241317599	ENSG00000168385.17|SEPT2|pc|chr2:241317498:241317599:+	0	+
#Deleted in new
chr2	241324408	241324662	ENSG00000168385.17|SEPT2|pc|chr2:241324408:241324662:+	0	+
#Partially deleted in new
chr22	41332170	41336843	ENSG00000100403.11|ZC3H7B|pc|chr22:41332170:41336843:+	0	+
#Partially deleted in new
chr2	241336784	241336926	ENSG00000168385.17|SEPT2|pc|chr2:241336784:241336926:+	0	+
#Partially deleted in new
chr2	241336784	241337098	ENSG00000168385.17|SEPT2|pc|chr2:241336784:241337098:+	0	+
#Deleted in new
chr2	241351339	241351715	ENSG00000223374.1|AC005104.1|lncRNA|chr2:241351339:241351715:-	0	-
#Deleted in new
chr2	241386742	241386802	ENSG00000006607.13|FARP2|pc|chr2:241386742:241386802:+	0	+
#Deleted in new
chr2	241387154	241387312	ENSG00000006607.13|FARP2|pc|chr2:241387154:241387312:+	0	+
#Deleted in new
chr2	241395442	241395458	ENSG00000006607.13|FARP2|pc|chr2:241395442:241395458:+	0	+
#Deleted in new
chr2	241395442	241395644	ENSG00000006607.13|FARP2|pc|chr2:241395442:241395644:+	0	+
#Deleted in new
chr2	241395442	241395984	ENSG00000006607.13|FARP2|pc|chr2:241395442:241395984:+	0	+
#Deleted in new
chr2	241405251	241405403	ENSG00000006607.13|FARP2|pc|chr2:241405251:241405403:+	0	+
#Deleted in new
chr2	241405255	241405402	ENSG00000006607.13|FARP2|pc|chr2:241405255:241405402:+	0	+
#Deleted in new
chr2	241405255	241405403	ENSG00000006607.13|FARP2|pc|chr2:241405255:241405403:+	0	+
#Deleted in new
chr2	24142491	24142746	ENSG00000219626.8|FAM228B|pc|chr2:24142491:24142746:+	0	+
#Partially deleted in new
chr22	41430933	41431375	ENSG00000273424.1|AL008582.1|lncRNA|chr22:41430933:41431375:+	0	+
#Deleted in new
chr2	241432210	241432241	ENSG00000006607.13|FARP2|pc|chr2:241432210:241432241:+	0	+
#Deleted in new
chr2	241465459	241466030	ENSG00000006607.13|FARP2|pc|chr2:241465459:241466030:+	0	+
#Deleted in new
chr2	241465673	241465778	ENSG00000006607.13|FARP2|pc|chr2:241465673:241465778:+	0	+
#Deleted in new
chr2	241465673	241466036	ENSG00000006607.13|FARP2|pc|chr2:241465673:241466036:+	0	+
#Deleted in new
chr2	241488437	241488510	ENSG00000006607.13|FARP2|pc|chr2:241488437:241488510:+	0	+
#Partially deleted in new
chr2	241508317	241508362	ENSG00000115694.14|STK25|pc|chr2:241508317:241508362:-	0	-
#Deleted in new
chr22	41521298	41521590	ENSG00000100412.15|ACO2|pc|chr22:41521298:41521590:+	0	+
#Partially deleted in new
chr22	41539142	41540795	ENSG00000100413.16|POLR3H|pc|chr22:41539142:41540795:-	0	-
#Deleted in new
chr2	241544402	241544844	ENSG00000234235.1|BOK-AS1|lncRNA|chr2:241544402:241544844:-	0	-
#Deleted in new
chr2	241551423	241551477	ENSG00000176720.5|BOK|pc|chr2:241551423:241551477:+	0	+
#Partially deleted in new
chr22	41578805	41580689	ENSG00000100417.11|PMM1|pc|chr22:41578805:41580689:-	0	-
#Deleted in new
chr2	241581921	241582726	ENSG00000273113.1|AC133528.1|lncRNA|chr2:241581921:241582726:+	0	+
#Partially deleted in new
chr22	41586296	41586430	ENSG00000100417.11|PMM1|pc|chr22:41586296:41586430:-	0	-
#Deleted in new
chr2	241591950	241592290	ENSG00000176946.11|THAP4|pc|chr2:241591950:241592290:-	0	-
#Deleted in new
chr2	241594632	241594730	ENSG00000176946.11|THAP4|pc|chr2:241594632:241594730:-	0	-
#Deleted in new
chr2	241651883	241651966	ENSG00000168397.16|ATG4B|pc|chr2:241651883:241651966:+	0	+
#Deleted in new
chr2	241651883	241651974	ENSG00000168397.16|ATG4B|pc|chr2:241651883:241651974:+	0	+
#Deleted in new
chr2	241651883	241652012	ENSG00000168397.16|ATG4B|pc|chr2:241651883:241652012:+	0	+
#Deleted in new
chr2	24165883	24166039	ENSG00000232642.1|AC008073.2|lncRNA|chr2:24165883:24166039:-	0	-
#Partially deleted in new
chr2	241659107	241659448	ENSG00000168397.16|ATG4B|pc|chr2:241659107:241659448:+	0	+
#Partially deleted in new
chr2	241659107	241659611	ENSG00000168397.16|ATG4B|pc|chr2:241659107:241659611:+	0	+
#Partially deleted in new
chr2	241659107	241659772	ENSG00000168397.16|ATG4B|pc|chr2:241659107:241659772:+	0	+
#Deleted in new
chr2	24166441	24166563	ENSG00000232642.1|AC008073.2|lncRNA|chr2:24166441:24166563:-	0	-
#Deleted in new
chr2	24167626	24167669	ENSG00000219626.8|FAM228B|pc|chr2:24167626:24167669:+	0	+
#Deleted in new
chr2	24167626	24167683	ENSG00000219626.8|FAM228B|pc|chr2:24167626:24167683:+	0	+
#Deleted in new
chr2	24167819	24168057	ENSG00000232642.1|AC008073.2|lncRNA|chr2:24167819:24168057:-	0	-
#Deleted in new
chr22	41681225	41681559	ENSG00000100138.13|SNU13|pc|chr22:41681225:41681559:-	0	-
#Deleted in new
chr2	241681918	241682333	ENSG00000168393.12|DTYMK|pc|chr2:241681918:241682333:-	0	-
#Deleted in new
chr2	241682154	241682333	ENSG00000168393.12|DTYMK|pc|chr2:241682154:241682333:-	0	-
#Deleted in new
chr22	41682355	41682456	ENSG00000100138.13|SNU13|pc|chr22:41682355:41682456:-	0	-
#Deleted in new
chr22	41682355	41682587	ENSG00000100138.13|SNU13|pc|chr22:41682355:41682587:-	0	-
#Deleted in new
chr22	41682355	41682622	ENSG00000100138.13|SNU13|pc|chr22:41682355:41682622:-	0	-
#Deleted in new
chr2	241682798	241682915	ENSG00000168393.12|DTYMK|pc|chr2:241682798:241682915:-	0	-
#Deleted in new
chr2	241684715	241684749	ENSG00000168393.12|DTYMK|pc|chr2:241684715:241684749:-	0	-
#Partially deleted in new
chr2	241685115	241685877	ENSG00000168393.12|DTYMK|pc|chr2:241685115:241685877:-	0	-
#Deleted in new
chr2	241687084	241688062	ENSG00000168395.15|ING5|pc|chr2:241687084:241688062:+	0	+
#Partially deleted in new
chr22	41687721	41688327	ENSG00000100138.13|SNU13|pc|chr22:41687721:41688327:-	0	-
#Partially deleted in new
chr22	41687741	41688327	ENSG00000100138.13|SNU13|pc|chr22:41687741:41688327:-	0	-
#Partially deleted in new
chr22	41688078	41688327	ENSG00000100138.13|SNU13|pc|chr22:41688078:41688327:-	0	-
#Deleted in new
chr2	241689837	241690653	ENSG00000168395.15|ING5|pc|chr2:241689837:241690653:+	0	+
#Deleted in new
chr2	241690413	241690653	ENSG00000168395.15|ING5|pc|chr2:241690413:241690653:+	0	+
#Deleted in new
chr2	241694114	241694289	ENSG00000168395.15|ING5|pc|chr2:241694114:241694289:+	0	+
#Deleted in new
chr2	24169948	24170124	ENSG00000232642.1|AC008073.2|lncRNA|chr2:24169948:24170124:-	0	-
#Partially deleted in new
chr2	241711977	241712380	ENSG00000168395.15|ING5|pc|chr2:241711977:241712380:+	0	+
#Deleted in new
chr2	241719482	241719612	ENSG00000168395.15|ING5|pc|chr2:241719482:241719612:+	0	+
#Deleted in new
chr2	241719482	241719919	ENSG00000168395.15|ING5|pc|chr2:241719482:241719919:+	0	+
#Partially deleted in new
chr2	241719975	241721715	ENSG00000168395.15|ING5|pc|chr2:241719975:241721715:+	0	+
#Partially deleted in new
chr2	241719975	241721805	ENSG00000168395.15|ING5|pc|chr2:241719975:241721805:+	0	+
#Partially deleted in new
chr2	241720740	241721430	ENSG00000168395.15|ING5|pc|chr2:241720740:241721430:+	0	+
#Deleted in new
chr2	241723790	241724036	ENSG00000168395.15|ING5|pc|chr2:241723790:241724036:+	0	+
#Deleted in new
chr2	241723790	241724038	ENSG00000168395.15|ING5|pc|chr2:241723790:241724038:+	0	+
#Deleted in new
chr2	24172565	24173396	ENSG00000276087.1|AC008073.3|pc|chr2:24172565:24173396:+	0	+
#Deleted in new
chr2	241726447	241726783	ENSG00000168395.15|ING5|pc|chr2:241726447:241726783:+	0	+
#Deleted in new
chr2	241734578	241734695	ENSG00000180902.17|D2HGDH|pc|chr2:241734578:241734695:+	0	+
#Deleted in new
chr2	241734601	241734695	ENSG00000180902.17|D2HGDH|pc|chr2:241734601:241734695:+	0	+
#Deleted in new
chr2	241734614	241734695	ENSG00000180902.17|D2HGDH|pc|chr2:241734614:241734695:+	0	+
#Deleted in new
chr2	241734629	241734695	ENSG00000180902.17|D2HGDH|pc|chr2:241734629:241734695:+	0	+
#Deleted in new
chr2	241734714	241734804	ENSG00000215692.2|AC114730.1|lncRNA|chr2:241734714:241734804:-	0	-
#Deleted in new
chr2	241735944	241736243	ENSG00000180902.17|D2HGDH|pc|chr2:241735944:241736243:+	0	+
#Deleted in new
chr2	24174507	24174783	ENSG00000232642.1|AC008073.2|lncRNA|chr2:24174507:24174783:-	0	-
#Deleted in new
chr2	24174507	24175005	ENSG00000232642.1|AC008073.2|lncRNA|chr2:24174507:24175005:-	0	-
#Deleted in new
chr2	24174550	24174718	ENSG00000276087.1|AC008073.3|pc|chr2:24174550:24174718:+	0	+
#Deleted in new
chr2	241748826	241748903	ENSG00000180902.17|D2HGDH|pc|chr2:241748826:241748903:+	0	+
#Deleted in new
chr2	241748829	241748942	ENSG00000180902.17|D2HGDH|pc|chr2:241748829:241748942:+	0	+
#Deleted in new
chr2	241748835	241748942	ENSG00000180902.17|D2HGDH|pc|chr2:241748835:241748942:+	0	+
#Partially deleted in new
chr2	241748864	241749929	ENSG00000180902.17|D2HGDH|pc|chr2:241748864:241749929:+	0	+
#Deleted in new
chr2	241748869	241749008	ENSG00000180902.17|D2HGDH|pc|chr2:241748869:241749008:+	0	+
#Deleted in new
chr2	241748989	241749008	ENSG00000180902.17|D2HGDH|pc|chr2:241748989:241749008:+	0	+
#Deleted in new
chr2	241749293	241749399	ENSG00000180902.17|D2HGDH|pc|chr2:241749293:241749399:+	0	+
#Deleted in new
chr2	241749298	241749399	ENSG00000180902.17|D2HGDH|pc|chr2:241749298:241749399:+	0	+
#Deleted in new
chr2	24175068	24175174	ENSG00000186453.12|FAM228A|pc|chr2:24175068:24175174:+	0	+
#Deleted in new
chr2	24175102	24175174	ENSG00000186453.12|FAM228A|pc|chr2:24175102:24175174:+	0	+
#Deleted in new
chr2	241754520	241754746	ENSG00000180902.17|D2HGDH|pc|chr2:241754520:241754746:+	0	+
#Deleted in new
chr2	241754630	241754746	ENSG00000180902.17|D2HGDH|pc|chr2:241754630:241754746:+	0	+
#Deleted in new
chr2	241754792	241754851	ENSG00000234793.1|AC114730.2|lncRNA|chr2:241754792:241754851:-	0	-
#Deleted in new
chr2	241755044	241755210	ENSG00000180902.17|D2HGDH|pc|chr2:241755044:241755210:+	0	+
#Partially deleted in new
chr2	241755044	241756014	ENSG00000180902.17|D2HGDH|pc|chr2:241755044:241756014:+	0	+
#Deleted in new
chr2	241755073	241755609	ENSG00000180902.17|D2HGDH|pc|chr2:241755073:241755609:+	0	+
#Deleted in new
chr2	241755131	241755740	ENSG00000234793.1|AC114730.2|lncRNA|chr2:241755131:241755740:-	0	-
#Deleted in new
chr22	41759348	41759446	ENSG00000167077.12|MEI1|pc|chr22:41759348:41759446:+	0	+
#Deleted in new
chr22	41767575	41767608	ENSG00000167077.12|MEI1|pc|chr22:41767575:41767608:+	0	+
#Partially deleted in new
chr2	241767709	241768809	ENSG00000180902.17|D2HGDH|pc|chr2:241767709:241768809:+	0	+
#Partially deleted in new
chr2	241767709	241768811	ENSG00000180902.17|D2HGDH|pc|chr2:241767709:241768811:+	0	+
#Partially deleted in new
chr2	241767709	241768816	ENSG00000180902.17|D2HGDH|pc|chr2:241767709:241768816:+	0	+
#Partially deleted in new
chr2	241767712	241768811	ENSG00000180902.17|D2HGDH|pc|chr2:241767712:241768811:+	0	+
#Deleted in new
chr2	241776824	241776984	ENSG00000154252.11|GAL3ST2|pc|chr2:241776824:241776984:+	0	+
#Deleted in new
chr2	241800915	241801388	ENSG00000215023.2|AC131097.1|lncRNA|chr2:241800915:241801388:-	0	-
#Deleted in new
chr2	241808311	241809368	ENSG00000224272.2|AC131097.3|lncRNA|chr2:241808311:241809368:-	0	-
#Deleted in new
chr2	241808824	241809274	ENSG00000204099.11|NEU4|pc|chr2:241808824:241809274:+	0	+
#Deleted in new
chr2	241809064	241809274	ENSG00000204099.11|NEU4|pc|chr2:241809064:241809274:+	0	+
#Deleted in new
chr2	241809109	241809368	ENSG00000224272.2|AC131097.3|lncRNA|chr2:241809109:241809368:-	0	-
#Deleted in new
chr2	241809186	241809274	ENSG00000204099.11|NEU4|pc|chr2:241809186:241809274:+	0	+
#Deleted in new
chr2	241809192	241809274	ENSG00000204099.11|NEU4|pc|chr2:241809192:241809274:+	0	+
#Deleted in new
chr2	241809234	241809274	ENSG00000204099.11|NEU4|pc|chr2:241809234:241809274:+	0	+
#Deleted in new
chr2	241809697	241809806	ENSG00000224272.2|AC131097.3|lncRNA|chr2:241809697:241809806:-	0	-
#Deleted in new
chr2	241809781	241809925	ENSG00000204099.11|NEU4|pc|chr2:241809781:241809925:+	0	+
#Deleted in new
chr2	241810446	241811217	ENSG00000224272.2|AC131097.3|lncRNA|chr2:241810446:241811217:-	0	-
#Deleted in new
chr2	241810466	241810514	ENSG00000224272.2|AC131097.3|lncRNA|chr2:241810466:241810514:-	0	-
#Deleted in new
chr2	241810466	241810637	ENSG00000224272.2|AC131097.3|lncRNA|chr2:241810466:241810637:-	0	-
#Deleted in new
chr2	241810599	241810623	ENSG00000224272.2|AC131097.3|lncRNA|chr2:241810599:241810623:-	0	-
#Deleted in new
chr2	241810931	241811461	ENSG00000204099.11|NEU4|pc|chr2:241810931:241811461:+	0	+
#Deleted in new
chr2	241810934	241811461	ENSG00000204099.11|NEU4|pc|chr2:241810934:241811461:+	0	+
#Deleted in new
chr2	241810999	241811461	ENSG00000204099.11|NEU4|pc|chr2:241810999:241811461:+	0	+
#Deleted in new
chr2	241811389	241811461	ENSG00000204099.11|NEU4|pc|chr2:241811389:241811461:+	0	+
#Deleted in new
chr2	241811395	241811461	ENSG00000204099.11|NEU4|pc|chr2:241811395:241811461:+	0	+
#Deleted in new
chr2	241811396	241811454	ENSG00000204099.11|NEU4|pc|chr2:241811396:241811454:+	0	+
#Deleted in new
chr2	241811408	241811461	ENSG00000204099.11|NEU4|pc|chr2:241811408:241811461:+	0	+
#Deleted in new
chr2	241811424	241811461	ENSG00000204099.11|NEU4|pc|chr2:241811424:241811461:+	0	+
#Deleted in new
chr2	241811703	241812016	ENSG00000224272.2|AC131097.3|lncRNA|chr2:241811703:241812016:-	0	-
#Deleted in new
chr2	241844379	241844478	ENSG00000235151.1|AC131097.4|lncRNA|chr2:241844379:241844478:+	0	+
#Deleted in new
chr2	241844564	241845036	ENSG00000235151.1|AC131097.4|lncRNA|chr2:241844564:241845036:+	0	+
#Deleted in new
chr2	241870990	241871171	ENSG00000188011.5|RTP5|pc|chr2:241870990:241871171:+	0	+
#Partially deleted in new
chr2	241871713	241873819	ENSG00000188011.5|RTP5|pc|chr2:241871713:241873819:+	0	+
#Partially deleted in new
chr2	241871713	241873823	ENSG00000188011.5|RTP5|pc|chr2:241871713:241873823:+	0	+
#Deleted in new
chr2	241881362	241881478	ENSG00000233806.7|LINC01237|lncRNA|chr2:241881362:241881478:+	0	+
#Deleted in new
chr2	241881365	241881478	ENSG00000233806.7|LINC01237|lncRNA|chr2:241881365:241881478:+	0	+
#Deleted in new
chr2	241881366	241881474	ENSG00000233806.7|LINC01237|lncRNA|chr2:241881366:241881474:+	0	+
#Deleted in new
chr2	241881947	241882129	ENSG00000233806.7|LINC01237|lncRNA|chr2:241881947:241882129:+	0	+
#Deleted in new
chr2	241882559	241882635	ENSG00000233806.7|LINC01237|lncRNA|chr2:241882559:241882635:+	0	+
#Deleted in new
chr22	41886268	41886308	ENSG00000198911.11|SREBF2|pc|chr22:41886268:41886308:+	0	+
#Deleted in new
chr2	241893984	241894339	ENSG00000216921.7|AC131097.2|pc|chr2:241893984:241894339:-	0	-
#Deleted in new
chr2	241893988	241894339	ENSG00000216921.7|AC131097.2|pc|chr2:241893988:241894339:-	0	-
#Deleted in new
chr2	241894036	241894339	ENSG00000216921.7|AC131097.2|pc|chr2:241894036:241894339:-	0	-
#Deleted in new
chr2	241897185	241897334	ENSG00000216921.7|AC131097.2|pc|chr2:241897185:241897334:-	0	-
#Deleted in new
chr2	241899114	241899138	ENSG00000216921.7|AC131097.2|pc|chr2:241899114:241899138:-	0	-
#Deleted in new
chr2	241900357	241900448	ENSG00000216921.7|AC131097.2|pc|chr2:241900357:241900448:-	0	-
#Partially deleted in new
chr2	241902496	241902551	ENSG00000216921.7|AC131097.2|pc|chr2:241902496:241902551:-	0	-
#Deleted in new
chr2	241933835	241934210	ENSG00000233806.7|LINC01237|lncRNA|chr2:241933835:241934210:+	0	+
#Deleted in new
chr2	241934073	241934210	ENSG00000233806.7|LINC01237|lncRNA|chr2:241934073:241934210:+	0	+
#Deleted in new
chr22	41940138	41940219	ENSG00000100162.14|CENPM|pc|chr22:41940138:41940219:-	0	-
#Deleted in new
chr2	241958858	241958933	ENSG00000233806.7|LINC01237|lncRNA|chr2:241958858:241958933:+	0	+
#Deleted in new
chr2	241965926	241966047	ENSG00000233806.7|LINC01237|lncRNA|chr2:241965926:241966047:+	0	+
#Deleted in new
chr2	241965926	241966120	ENSG00000233806.7|LINC01237|lncRNA|chr2:241965926:241966120:+	0	+
#Deleted in new
chr2	241965926	241966328	ENSG00000233806.7|LINC01237|lncRNA|chr2:241965926:241966328:+	0	+
#Deleted in new
chr2	241965926	241966440	ENSG00000233806.7|LINC01237|lncRNA|chr2:241965926:241966440:+	0	+
#Deleted in new
chr2	241970682	241971281	ENSG00000237940.3|LINC01238|lncRNA|chr2:241970682:241971281:+	0	+
#Deleted in new
chr2	241970999	241971281	ENSG00000237940.3|LINC01238|lncRNA|chr2:241970999:241971281:+	0	+
#Deleted in new
chr2	241971277	241971462	ENSG00000237940.3|LINC01238|lncRNA|chr2:241971277:241971462:+	0	+
#Deleted in new
chr2	241971374	241971462	ENSG00000237940.3|LINC01238|lncRNA|chr2:241971374:241971462:+	0	+
#Deleted in new
chr2	241971374	241971493	ENSG00000237940.3|LINC01238|lncRNA|chr2:241971374:241971493:+	0	+
#Deleted in new
chr2	241971679	241971899	ENSG00000237940.3|LINC01238|lncRNA|chr2:241971679:241971899:+	0	+
#Deleted in new
chr2	241971679	241971924	ENSG00000237940.3|LINC01238|lncRNA|chr2:241971679:241971924:+	0	+
#Deleted in new
chr2	241971684	241971775	ENSG00000237940.3|LINC01238|lncRNA|chr2:241971684:241971775:+	0	+
#Deleted in new
chr2	241972037	241972556	ENSG00000237940.3|LINC01238|lncRNA|chr2:241972037:241972556:+	0	+
#Deleted in new
chr2	241972112	241972169	ENSG00000237940.3|LINC01238|lncRNA|chr2:241972112:241972169:+	0	+
#Deleted in new
chr2	241972451	241972556	ENSG00000237940.3|LINC01238|lncRNA|chr2:241972451:241972556:+	0	+
#Deleted in new
chr2	241974449	241974529	ENSG00000237940.3|LINC01238|lncRNA|chr2:241974449:241974529:+	0	+
#Deleted in new
chr2	241976077	241977276	ENSG00000237940.3|LINC01238|lncRNA|chr2:241976077:241977276:+	0	+
#Deleted in new
chr2	242001208	242006013	ENSG00000280119.1|AC093642.2|lncRNA|chr2:242001208:242006013:+	0	+
#Deleted in new
chr2	242025182	242025585	ENSG00000226423.1|AC093642.1|lncRNA|chr2:242025182:242025585:-	0	-
#Deleted in new
chr2	242026014	242026176	ENSG00000226423.1|AC093642.1|lncRNA|chr2:242026014:242026176:-	0	-
#Deleted in new
chr22	42029938	42030026	ENSG00000183066.14|WBP2NL|pc|chr22:42029938:42030026:+	0	+
#Deleted in new
chr22	42030545	42030823	ENSG00000183066.14|WBP2NL|pc|chr22:42030545:42030823:+	0	+
#Deleted in new
chr22	42030719	42030823	ENSG00000183066.14|WBP2NL|pc|chr22:42030719:42030823:+	0	+
#Partially deleted in new
chr22	42030719	42032929	ENSG00000183066.14|WBP2NL|pc|chr22:42030719:42032929:+	0	+
#Deleted in new
chr22	42032630	42032650	ENSG00000183066.14|WBP2NL|pc|chr22:42032630:42032650:+	0	+
#Deleted in new
chr22	42032630	42032769	ENSG00000183066.14|WBP2NL|pc|chr22:42032630:42032769:+	0	+
#Deleted in new
chr22	42032630	42032931	ENSG00000183066.14|WBP2NL|pc|chr22:42032630:42032931:+	0	+
#Deleted in new
chr2	242047694	242047763	ENSG00000232002.1|LINC01880|lncRNA|chr2:242047694:242047763:-	0	-
#Deleted in new
chr2	242048057	242048283	ENSG00000232002.1|LINC01880|lncRNA|chr2:242048057:242048283:-	0	-
#Deleted in new
chr22	42058289	42058456	ENSG00000183066.14|WBP2NL|pc|chr22:42058289:42058456:+	0	+
#Deleted in new
chr2	242060296	242060519	ENSG00000232002.1|LINC01880|lncRNA|chr2:242060296:242060519:-	0	-
#Partially deleted in new
chr22	42070762	42070830	ENSG00000198951.11|NAGA|pc|chr22:42070762:42070830:-	0	-
#Partially deleted in new
chr22	42083118	42084284	ENSG00000183172.8|SMDT1|pc|chr22:42083118:42084284:+	0	+
#Deleted in new
chr2	242084095	242084138	ENSG00000232002.1|LINC01880|lncRNA|chr2:242084095:242084138:-	0	-
#Deleted in new
chr2	242087350	242088457	ENSG00000261186.2|LINC01238|lncRNA|chr2:242087350:242088457:-	0	-
#Deleted in new
chr22	42089629	42090028	ENSG00000270083.1|AL021878.2|lncRNA|chr22:42089629:42090028:-	0	-
#Partially deleted in new
chr22	42090966	42091181	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42090966:42091181:+	0	+
#Deleted in new
chr22	42091203	42091600	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42091203:42091600:+	0	+
#Deleted in new
chr22	42091296	42091600	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42091296:42091600:+	0	+
#Deleted in new
chr22	42091301	42091596	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42091301:42091596:+	0	+
#Deleted in new
chr22	42091351	42091600	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42091351:42091600:+	0	+
#Deleted in new
chr22	42091401	42091600	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42091401:42091600:+	0	+
#Deleted in new
chr22	42092118	42092232	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42092118:42092232:+	0	+
#Deleted in new
chr22	42112305	42112390	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42112305:42112390:+	0	+
#Deleted in new
chr22	42118255	42118492	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42118255:42118492:+	0	+
#Deleted in new
chr22	42118325	42118492	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42118325:42118492:+	0	+
#Deleted in new
chr22	42118346	42118492	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42118346:42118492:+	0	+
#Deleted in new
chr22	42118498	42118536	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42118498:42118536:+	0	+
#Deleted in new
chr22	42120035	42120128	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42120035:42120128:+	0	+
#Deleted in new
chr22	42121196	42121735	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42121196:42121735:+	0	+
#Deleted in new
chr22	42122792	42122888	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42122792:42122888:+	0	+
#Deleted in new
chr22	42123525	42123591	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42123525:42123591:+	0	+
#Deleted in new
chr22	42123733	42124130	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42123733:42124130:+	0	+
#Deleted in new
chr22	42123765	42123804	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42123765:42123804:+	0	+
#Deleted in new
chr22	42124046	42124130	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42124046:42124130:+	0	+
#Deleted in new
chr22	42124046	42124562	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42124046:42124562:+	0	+
#Deleted in new
chr22	42124476	42124562	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42124476:42124562:+	0	+
#Deleted in new
chr22	42124519	42124562	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42124519:42124562:+	0	+
#Deleted in new
chr22	42124874	42124884	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42124874:42124884:+	0	+
#Deleted in new
chr22	42124874	42124899	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42124874:42124899:+	0	+
#Deleted in new
chr22	42124874	42124959	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42124874:42124959:+	0	+
#Deleted in new
chr22	42124874	42125002	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42124874:42125002:+	0	+
#Deleted in new
chr22	42124874	42125028	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42124874:42125028:+	0	+
#Deleted in new
chr22	42124874	42125349	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42124874:42125349:+	0	+
#Deleted in new
chr22	42124874	42125407	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42124874:42125407:+	0	+
#Deleted in new
chr22	42132030	42132190	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42132030:42132190:+	0	+
#Deleted in new
chr22	42133039	42133090	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42133039:42133090:+	0	+
#Deleted in new
chr22	42133329	42133410	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42133329:42133410:+	0	+
#Deleted in new
chr22	42135134	42135239	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42135134:42135239:+	0	+
#Deleted in new
chr22	42135677	42135743	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42135677:42135743:+	0	+
#Deleted in new
chr22	42136198	42136282	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42136198:42136282:+	0	+
#Deleted in new
chr22	42136198	42136714	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42136198:42136714:+	0	+
#Deleted in new
chr22	42136432	42136664	ENSG00000232710.1|AC254562.2|lncRNA|chr22:42136432:42136664:-	0	-
#Deleted in new
chr22	42136671	42136714	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42136671:42136714:+	0	+
#Deleted in new
chr22	42137026	42137050	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42137026:42137050:+	0	+
#Deleted in new
chr22	42137026	42137742	ENSG00000237037.9|NDUFA6-AS1|lncRNA|chr22:42137026:42137742:+	0	+
#Deleted in new
chr22	42137986	42138105	ENSG00000232710.1|AC254562.2|lncRNA|chr22:42137986:42138105:-	0	-
#Deleted in new
chr22	42138059	42138282	ENSG00000281538.1|AC254562.3|lncRNA|chr22:42138059:42138282:+	0	+
#Partially deleted in new
chr22	42139318	42139726	ENSG00000281538.1|AC254562.3|lncRNA|chr22:42139318:42139726:+	0	+
#Deleted in new
chr2	24214380	24214425	ENSG00000242628.5|AC009228.1|lncRNA|chr2:24214380:24214425:+	0	+
#Partially deleted in new
chr22	42410276	42410491	ENSG00000235568.6|NFAM1|pc|chr22:42410276:42410491:-	0	-
#Deleted in new
chr22	42440490	42440604	ENSG00000230107.1|AL022316.1|lncRNA|chr22:42440490:42440604:+	0	+
#Deleted in new
chr22	42445701	42445816	ENSG00000230107.1|AL022316.1|lncRNA|chr22:42445701:42445816:+	0	+
#Deleted in new
chr22	42446162	42446195	ENSG00000230107.1|AL022316.1|lncRNA|chr22:42446162:42446195:+	0	+
#Deleted in new
chr22	42500578	42500692	ENSG00000172250.14|SERHL|lncRNA|chr22:42500578:42500692:+	0	+
#Deleted in new
chr22	42500589	42500692	ENSG00000172250.14|SERHL|lncRNA|chr22:42500589:42500692:+	0	+
#Deleted in new
chr22	42511815	42511927	ENSG00000172250.14|SERHL|lncRNA|chr22:42511815:42511927:+	0	+
#Deleted in new
chr22	42518612	42518728	ENSG00000189306.10|RRP7A|pc|chr22:42518612:42518728:-	0	-
#Deleted in new
chr22	42553616	42553713	ENSG00000183569.17|SERHL2|pc|chr22:42553616:42553713:+	0	+
#Deleted in new
chr22	42553858	42554042	ENSG00000183569.17|SERHL2|pc|chr22:42553858:42554042:+	0	+
#Deleted in new
chr22	42553861	42554042	ENSG00000183569.17|SERHL2|pc|chr22:42553861:42554042:+	0	+
#Deleted in new
chr22	42553884	42554042	ENSG00000183569.17|SERHL2|pc|chr22:42553884:42554042:+	0	+
#Deleted in new
chr22	42553917	42554042	ENSG00000183569.17|SERHL2|pc|chr22:42553917:42554042:+	0	+
#Deleted in new
chr22	42553918	42554042	ENSG00000183569.17|SERHL2|pc|chr22:42553918:42554042:+	0	+
#Deleted in new
chr22	42553934	42554042	ENSG00000183569.17|SERHL2|pc|chr22:42553934:42554042:+	0	+
#Deleted in new
chr22	42554014	42554042	ENSG00000183569.17|SERHL2|pc|chr22:42554014:42554042:+	0	+
#Deleted in new
chr22	42554020	42554042	ENSG00000183569.17|SERHL2|pc|chr22:42554020:42554042:+	0	+
#Deleted in new
chr22	42563388	42563481	ENSG00000183569.17|SERHL2|pc|chr22:42563388:42563481:+	0	+
#Deleted in new
chr22	42573633	42573745	ENSG00000183569.17|SERHL2|pc|chr22:42573633:42573745:+	0	+
#Deleted in new
chr22	42603595	42603686	ENSG00000100227.17|POLDIP3|pc|chr22:42603595:42603686:-	0	-
#Partially deleted in new
chr22	42615243	42615907	ENSG00000270022.3|Z93241.1|lncRNA|chr22:42615243:42615907:+	0	+
#Split in new
chr22	42694542	42694986	ENSG00000128274.15|A4GALT|pc|chr22:42694542:42694986:-	0	-
#Deleted in new
chr2	242797	242871	ENSG00000035115.21|SH3YL1|pc|chr2:242797:242871:-	0	-
#Deleted in new
chr22	42858386	42858522	ENSG00000100266.18|PACSIN2|pc|chr22:42858386:42858522:-	0	-
#Deleted in new
chr22	42909426	42909565	ENSG00000100266.18|PACSIN2|pc|chr22:42909426:42909565:-	0	-
#Deleted in new
chr22	42945784	42945873	ENSG00000100266.18|PACSIN2|pc|chr22:42945784:42945873:-	0	-
#Partially deleted in new
chr22	43038584	43040264	ENSG00000230319.1|AL022476.1|lncRNA|chr22:43038584:43040264:+	0	+
#Deleted in new
chr22	43041210	43041301	ENSG00000230319.1|AL022476.1|lncRNA|chr22:43041210:43041301:+	0	+
#Deleted in new
chr22	43070170	43070242	ENSG00000100271.16|TTLL1|pc|chr22:43070170:43070242:-	0	-
#Deleted in new
chr22	43079901	43079986	ENSG00000100271.16|TTLL1|pc|chr22:43079901:43079986:-	0	-
#Deleted in new
chr2	24308877	24308952	ENSG00000198399.14|ITSN2|pc|chr2:24308877:24308952:-	0	-
#Deleted in new
chr22	43089276	43089338	ENSG00000100271.16|TTLL1|pc|chr22:43089276:43089338:-	0	-
#Deleted in new
chr22	43089276	43089419	ENSG00000100271.16|TTLL1|pc|chr22:43089276:43089419:-	0	-
#Deleted in new
chr22	43089276	43089428	ENSG00000100271.16|TTLL1|pc|chr22:43089276:43089428:-	0	-
#Deleted in new
chr22	43151513	43151604	ENSG00000100300.17|TSPO|pc|chr22:43151513:43151604:+	0	+
#Deleted in new
chr22	43151546	43151604	ENSG00000100300.17|TSPO|pc|chr22:43151546:43151604:+	0	+
#Deleted in new
chr22	43151572	43151604	ENSG00000100300.17|TSPO|pc|chr22:43151572:43151604:+	0	+
#Deleted in new
chr22	43151898	43152220	ENSG00000100300.17|TSPO|pc|chr22:43151898:43152220:+	0	+
#Deleted in new
chr22	43151930	43152127	ENSG00000100300.17|TSPO|pc|chr22:43151930:43152127:+	0	+
#Deleted in new
chr22	43151934	43152220	ENSG00000100300.17|TSPO|pc|chr22:43151934:43152220:+	0	+
#Deleted in new
chr22	43171627	43171750	ENSG00000100304.12|TTLL12|pc|chr22:43171627:43171750:-	0	-
#Partially deleted in new
chr22	43175270	43175678	ENSG00000100304.12|TTLL12|pc|chr22:43175270:43175678:-	0	-
#Deleted in new
chr22	43233427	43233624	ENSG00000234892.1|Z82214.1|lncRNA|chr22:43233427:43233624:+	0	+
#Deleted in new
chr22	43270131	43270589	ENSG00000159307.18|SCUBE1|pc|chr22:43270131:43270589:-	0	-
#Deleted in new
chr22	43270136	43270589	ENSG00000159307.18|SCUBE1|pc|chr22:43270136:43270589:-	0	-
#Deleted in new
chr22	43272423	43272514	ENSG00000159307.18|SCUBE1|pc|chr22:43272423:43272514:-	0	-
#Deleted in new
chr22	43272508	43272539	ENSG00000159307.18|SCUBE1|pc|chr22:43272508:43272539:-	0	-
#Deleted in new
chr22	43275954	43276011	ENSG00000203527.2|Z99756.1|lncRNA|chr22:43275954:43276011:+	0	+
#Partially deleted in new
chr22	43318222	43318349	ENSG00000159307.18|SCUBE1|pc|chr22:43318222:43318349:-	0	-
#Deleted in new
chr22	43400330	43400454	ENSG00000236117.1|LINC01639|lncRNA|chr22:43400330:43400454:+	0	+
#Deleted in new
chr22	43402104	43402231	ENSG00000236117.1|LINC01639|lncRNA|chr22:43402104:43402231:+	0	+
#Partially deleted in new
chr22	43409085	43409681	ENSG00000236117.1|LINC01639|lncRNA|chr22:43409085:43409681:+	0	+
#Deleted in new
chr2	243502	243562	ENSG00000035115.21|SH3YL1|pc|chr2:243502:243562:-	0	-
#Deleted in new
chr22	43516106	43516376	ENSG00000223843.4|EFCAB6-AS1|lncRNA|chr22:43516106:43516376:+	0	+
#Deleted in new
chr22	43518476	43518597	ENSG00000223843.4|EFCAB6-AS1|lncRNA|chr22:43518476:43518597:+	0	+
#Deleted in new
chr22	43532015	43532061	ENSG00000186976.14|EFCAB6|pc|chr22:43532015:43532061:-	0	-
#Deleted in new
chr22	43533370	43533505	ENSG00000186976.14|EFCAB6|pc|chr22:43533370:43533505:-	0	-
#Partially deleted in new
chr22	43534852	43537117	ENSG00000223843.4|EFCAB6-AS1|lncRNA|chr22:43534852:43537117:+	0	+
#Partially deleted in new
chr22	43551845	43555096	ENSG00000186976.14|EFCAB6|pc|chr22:43551845:43555096:-	0	-
#Deleted in new
chr22	43570086	43570143	ENSG00000186976.14|EFCAB6|pc|chr22:43570086:43570143:-	0	-
#Deleted in new
chr22	43812455	43812833	ENSG00000261251.1|Z97055.2|lncRNA|chr22:43812455:43812833:+	0	+
#Deleted in new
chr22	43812492	43813955	ENSG00000261251.1|Z97055.2|lncRNA|chr22:43812492:43813955:+	0	+
#Partially deleted in new
chr22	43816913	43817394	ENSG00000261251.1|Z97055.2|lncRNA|chr22:43816913:43817394:+	0	+
#Partially deleted in new
chr22	43924113	43924334	ENSG00000100344.10|PNPLA3|pc|chr22:43924113:43924334:+	0	+
#Deleted in new
chr22	43939335	43939393	ENSG00000100344.10|PNPLA3|pc|chr22:43939335:43939393:+	0	+
#Partially deleted in new
chr22	43946153	43947568	ENSG00000100344.10|PNPLA3|pc|chr22:43946153:43947568:+	0	+
#Partially deleted in new
chr22	43986343	43989257	ENSG00000100347.14|SAMM50|pc|chr22:43986343:43989257:+	0	+
#Deleted in new
chr22	43995390	43995490	ENSG00000100347.14|SAMM50|pc|chr22:43995390:43995490:+	0	+
#Deleted in new
chr22	43999210	43999411	ENSG00000188677.14|PARVB|pc|chr22:43999210:43999411:+	0	+
#Deleted in new
chr22	43999533	43999673	ENSG00000188677.14|PARVB|pc|chr22:43999533:43999673:+	0	+
#Deleted in new
chr22	44010491	44010531	ENSG00000100347.14|SAMM50|pc|chr22:44010491:44010531:+	0	+
#Deleted in new
chr22	44039835	44039957	ENSG00000188677.14|PARVB|pc|chr22:44039835:44039957:+	0	+
#Split in new
chr22	44102778	44116232	ENSG00000279175.1|AL033543.1|lncRNA|chr22:44102778:44116232:+	0	+
#Deleted in new
chr22	44138983	44139124	ENSG00000188677.14|PARVB|pc|chr22:44138983:44139124:+	0	+
#Deleted in new
chr22	44162733	44162851	ENSG00000188677.14|PARVB|pc|chr22:44162733:44162851:+	0	+
#Deleted in new
chr22	44167998	44168243	ENSG00000188677.14|PARVB|pc|chr22:44167998:44168243:+	0	+
#Deleted in new
chr22	44168178	44168273	ENSG00000188677.14|PARVB|pc|chr22:44168178:44168273:+	0	+
#Partially deleted in new
chr22	44172955	44173191	ENSG00000138964.16|PARVG|pc|chr22:44172955:44173191:+	0	+
#Partially deleted in new
chr22	44172983	44173191	ENSG00000138964.16|PARVG|pc|chr22:44172983:44173191:+	0	+
#Deleted in new
chr22	44180889	44181185	ENSG00000138964.16|PARVG|pc|chr22:44180889:44181185:+	0	+
#Deleted in new
chr22	44181021	44181185	ENSG00000138964.16|PARVG|pc|chr22:44181021:44181185:+	0	+
#Deleted in new
chr22	44181335	44181370	ENSG00000138964.16|PARVG|pc|chr22:44181335:44181370:+	0	+
#Deleted in new
chr22	44181397	44181917	ENSG00000138964.16|PARVG|pc|chr22:44181397:44181917:+	0	+
#Deleted in new
chr22	44181399	44181431	ENSG00000138964.16|PARVG|pc|chr22:44181399:44181431:+	0	+
#Deleted in new
chr22	44181738	44181917	ENSG00000138964.16|PARVG|pc|chr22:44181738:44181917:+	0	+
#Deleted in new
chr22	44181741	44181917	ENSG00000138964.16|PARVG|pc|chr22:44181741:44181917:+	0	+
#Deleted in new
chr22	44181749	44181917	ENSG00000138964.16|PARVG|pc|chr22:44181749:44181917:+	0	+
#Deleted in new
chr22	44181860	44181917	ENSG00000138964.16|PARVG|pc|chr22:44181860:44181917:+	0	+
#Deleted in new
chr22	44181863	44181917	ENSG00000138964.16|PARVG|pc|chr22:44181863:44181917:+	0	+
#Deleted in new
chr22	44183589	44184261	ENSG00000138964.16|PARVG|pc|chr22:44183589:44184261:+	0	+
#Deleted in new
chr22	44186576	44187172	ENSG00000138964.16|PARVG|pc|chr22:44186576:44187172:+	0	+
#Split in new
chr22	44210441	44229512	ENSG00000280011.1|AL031595.2|lncRNA|chr22:44210441:44229512:-	0	-
#Deleted in new
chr22	44218490	44218773	ENSG00000138964.16|PARVG|pc|chr22:44218490:44218773:+	0	+
#Deleted in new
chr22	44219483	44219533	ENSG00000138964.16|PARVG|pc|chr22:44219483:44219533:+	0	+
#Deleted in new
chr22	44365550	44365716	ENSG00000220702.1|Z85994.1|lncRNA|chr22:44365550:44365716:+	0	+
#Deleted in new
chr22	44365844	44366284	ENSG00000220702.1|Z85994.1|lncRNA|chr22:44365844:44366284:+	0	+
#Deleted in new
chr22	44443326	44443401	ENSG00000232655.1|LINC01656|lncRNA|chr22:44443326:44443401:+	0	+
#Deleted in new
chr22	44443641	44443791	ENSG00000232655.1|LINC01656|lncRNA|chr22:44443641:44443791:+	0	+
#Deleted in new
chr22	44444383	44444788	ENSG00000232655.1|LINC01656|lncRNA|chr22:44444383:44444788:+	0	+
#Deleted in new
chr22	44486294	44486914	ENSG00000279642.1|AL023973.1|lncRNA|chr22:44486294:44486914:-	0	-
#Deleted in new
chr22	44569338	44569441	ENSG00000187012.10|LINC00207|lncRNA|chr22:44569338:44569441:+	0	+
#Deleted in new
chr22	44569351	44569441	ENSG00000187012.10|LINC00207|lncRNA|chr22:44569351:44569441:+	0	+
#Deleted in new
chr22	44569596	44569663	ENSG00000187012.10|LINC00207|lncRNA|chr22:44569596:44569663:+	0	+
#Deleted in new
chr22	44570050	44570132	ENSG00000187012.10|LINC00207|lncRNA|chr22:44570050:44570132:+	0	+
#Deleted in new
chr22	44570499	44570588	ENSG00000187012.10|LINC00207|lncRNA|chr22:44570499:44570588:+	0	+
#Deleted in new
chr22	44570499	44570624	ENSG00000187012.10|LINC00207|lncRNA|chr22:44570499:44570624:+	0	+
#Deleted in new
chr22	44570911	44571028	ENSG00000187012.10|LINC00207|lncRNA|chr22:44570911:44571028:+	0	+
#Deleted in new
chr22	44571375	44571492	ENSG00000187012.10|LINC00207|lncRNA|chr22:44571375:44571492:+	0	+
#Deleted in new
chr22	44572038	44572210	ENSG00000187012.10|LINC00207|lncRNA|chr22:44572038:44572210:+	0	+
#Deleted in new
chr22	44572038	44572341	ENSG00000187012.10|LINC00207|lncRNA|chr22:44572038:44572341:+	0	+
#Deleted in new
chr22	44625316	44625419	ENSG00000234300.1|LINC00229|lncRNA|chr22:44625316:44625419:-	0	-
#Deleted in new
chr2	244626	244738	ENSG00000035115.21|SH3YL1|pc|chr2:244626:244738:-	0	-
#Deleted in new
chr22	44679346	44679885	ENSG00000186654.20|PRR5|pc|chr22:44679346:44679885:+	0	+
#Deleted in new
chr22	44730803	44731004	ENSG00000186654.20|PRR5|pc|chr22:44730803:44731004:+	0	+
#Split in new
chr22	44730883	44731821	ENSG00000186654.20|PRR5|pc|chr22:44730883:44731821:+	0	+
#Partially deleted in new
chr22	44734107	44735162	ENSG00000186654.20|PRR5|pc|chr22:44734107:44735162:+	0	+
#Deleted in new
chr22	44752704	44752740	ENSG00000241484.9|ARHGAP8|pc|chr22:44752704:44752740:+	0	+
#Deleted in new
chr22	44765228	44765399	ENSG00000241484.9|ARHGAP8|pc|chr22:44765228:44765399:+	0	+
#Deleted in new
chr22	44777161	44777229	ENSG00000241484.9|ARHGAP8|pc|chr22:44777161:44777229:+	0	+
#Deleted in new
chr22	44808671	44808732	ENSG00000241484.9|ARHGAP8|pc|chr22:44808671:44808732:+	0	+
#Deleted in new
chr22	44809005	44809098	ENSG00000241484.9|ARHGAP8|pc|chr22:44809005:44809098:+	0	+
#Deleted in new
chr22	44809005	44809801	ENSG00000248405.10|PRR5-ARHGAP8|pc|chr22:44809005:44809801:+	0	+
#Partially deleted in new
chr22	44848931	44850963	ENSG00000241484.9|ARHGAP8|pc|chr22:44848931:44850963:+	0	+
#Deleted in new
chr22	44933472	44933518	ENSG00000056487.15|PHF21B|pc|chr22:44933472:44933518:-	0	-
#Deleted in new
chr22	44967014	44967164	ENSG00000056487.15|PHF21B|pc|chr22:44967014:44967164:-	0	-
#Deleted in new
chr22	44968987	44969205	ENSG00000056487.15|PHF21B|pc|chr22:44968987:44969205:-	0	-
#Deleted in new
chr22	44968994	44969083	ENSG00000056487.15|PHF21B|pc|chr22:44968994:44969083:-	0	-
#Deleted in new
chr22	44970939	44971470	ENSG00000056487.15|PHF21B|pc|chr22:44970939:44971470:-	0	-
#Deleted in new
chr22	45001866	45002022	ENSG00000230922.1|AL079301.1|lncRNA|chr22:45001866:45002022:-	0	-
#Deleted in new
chr22	45002864	45003619	ENSG00000230922.1|AL079301.1|lncRNA|chr22:45002864:45003619:-	0	-
#Deleted in new
chr22	45133019	45134797	ENSG00000226328.6|NUP50-AS1|lncRNA|chr22:45133019:45134797:-	0	-
#Deleted in new
chr22	45134289	45134797	ENSG00000226328.6|NUP50-AS1|lncRNA|chr22:45134289:45134797:-	0	-
#Deleted in new
chr22	45134362	45134797	ENSG00000226328.6|NUP50-AS1|lncRNA|chr22:45134362:45134797:-	0	-
#Deleted in new
chr22	45138823	45138916	ENSG00000226328.6|NUP50-AS1|lncRNA|chr22:45138823:45138916:-	0	-
#Deleted in new
chr22	45152404	45152586	ENSG00000226328.6|NUP50-AS1|lncRNA|chr22:45152404:45152586:-	0	-
#Deleted in new
chr22	45155538	45156011	ENSG00000273243.1|Z82243.1|lncRNA|chr22:45155538:45156011:-	0	-
#Deleted in new
chr22	45164607	45164758	ENSG00000093000.18|NUP50|pc|chr22:45164607:45164758:+	0	+
#Deleted in new
chr22	45164634	45164758	ENSG00000093000.18|NUP50|pc|chr22:45164634:45164758:+	0	+
#Deleted in new
chr22	45164645	45164758	ENSG00000093000.18|NUP50|pc|chr22:45164645:45164758:+	0	+
#Deleted in new
chr22	45164665	45164728	ENSG00000093000.18|NUP50|pc|chr22:45164665:45164728:+	0	+
#Deleted in new
chr22	45164679	45164955	ENSG00000093000.18|NUP50|pc|chr22:45164679:45164955:+	0	+
#Deleted in new
chr22	45166308	45166430	ENSG00000093000.18|NUP50|pc|chr22:45166308:45166430:+	0	+
#Partially deleted in new
chr22	45171599	45172206	ENSG00000093000.18|NUP50|pc|chr22:45171599:45172206:+	0	+
#Deleted in new
chr22	45171808	45172037	ENSG00000093000.18|NUP50|pc|chr22:45171808:45172037:+	0	+
#Deleted in new
chr22	45180219	45180320	ENSG00000093000.18|NUP50|pc|chr22:45180219:45180320:+	0	+
#Deleted in new
chr22	45207572	45207772	ENSG00000100364.18|KIAA0930|pc|chr22:45207572:45207772:-	0	-
#Deleted in new
chr22	45262272	45263585	ENSG00000273287.2|AL008718.2|lncRNA|chr22:45262272:45263585:-	0	-
#Deleted in new
chr22	45308967	45309081	ENSG00000100376.11|FAM118A|pc|chr22:45308967:45309081:+	0	+
#Deleted in new
chr22	45308981	45309650	ENSG00000100376.11|FAM118A|pc|chr22:45308981:45309650:+	0	+
#Deleted in new
chr22	45309040	45309081	ENSG00000100376.11|FAM118A|pc|chr22:45309040:45309081:+	0	+
#Deleted in new
chr22	45309199	45309346	ENSG00000100376.11|FAM118A|pc|chr22:45309199:45309346:+	0	+
#Deleted in new
chr22	45309199	45309650	ENSG00000100376.11|FAM118A|pc|chr22:45309199:45309650:+	0	+
#Deleted in new
chr22	45321601	45321793	ENSG00000100376.11|FAM118A|pc|chr22:45321601:45321793:+	0	+
#Deleted in new
chr22	45322041	45322215	ENSG00000100376.11|FAM118A|pc|chr22:45322041:45322215:+	0	+
#Partially deleted in new
chr22	45328391	45329412	ENSG00000100376.11|FAM118A|pc|chr22:45328391:45329412:+	0	+
#Deleted in new
chr22	45329147	45329384	ENSG00000100376.11|FAM118A|pc|chr22:45329147:45329384:+	0	+
#Deleted in new
chr22	45329634	45329933	ENSG00000100376.11|FAM118A|pc|chr22:45329634:45329933:+	0	+
#Deleted in new
chr22	45329643	45329933	ENSG00000100376.11|FAM118A|pc|chr22:45329643:45329933:+	0	+
#Deleted in new
chr22	45337833	45337968	ENSG00000100376.11|FAM118A|pc|chr22:45337833:45337968:+	0	+
#Deleted in new
chr22	45502237	45502340	ENSG00000077942.18|FBLN1|pc|chr22:45502237:45502340:+	0	+
#Deleted in new
chr22	45502276	45502488	ENSG00000077942.18|FBLN1|pc|chr22:45502276:45502488:+	0	+
#Deleted in new
chr22	45523090	45523204	ENSG00000077942.18|FBLN1|pc|chr22:45523090:45523204:+	0	+
#Deleted in new
chr2	24554388	24554573	ENSG00000084676.15|NCOA1|pc|chr2:24554388:24554573:+	0	+
#Deleted in new
chr22	45558070	45558711	ENSG00000077942.18|FBLN1|pc|chr22:45558070:45558711:+	0	+
#Deleted in new
chr2	24556014	24556055	ENSG00000084676.15|NCOA1|pc|chr2:24556014:24556055:+	0	+
#Deleted in new
chr22	45564883	45565701	ENSG00000077942.18|FBLN1|pc|chr22:45564883:45565701:+	0	+
#Partially deleted in new
chr22	45604431	45604758	ENSG00000238120.1|LINC01589|lncRNA|chr22:45604431:45604758:-	0	-
#Deleted in new
chr22	45605400	45605621	ENSG00000238120.1|LINC01589|lncRNA|chr22:45605400:45605621:-	0	-
#Partially deleted in new
chr22	45657018	45680130	ENSG00000280383.1|Z95331.1|lncRNA|chr22:45657018:45680130:+	0	+
#Deleted in new
chr22	45703972	45704098	ENSG00000130638.16|ATXN10|pc|chr22:45703972:45704098:+	0	+
#Deleted in new
chr22	45734388	45734417	ENSG00000130638.16|ATXN10|pc|chr22:45734388:45734417:+	0	+
#Deleted in new
chr22	45811697	45811794	ENSG00000130638.16|ATXN10|pc|chr22:45811697:45811794:+	0	+
#Deleted in new
chr22	45823117	45823277	ENSG00000130638.16|ATXN10|pc|chr22:45823117:45823277:+	0	+
#Deleted in new
chr22	45927481	45927574	ENSG00000188064.9|WNT7B|pc|chr22:45927481:45927574:-	0	-
#Deleted in new
chr22	46014496	46015498	ENSG00000273145.1|BX537318.1|lncRNA|chr22:46014496:46015498:+	0	+
#Deleted in new
chr22	46042573	46042640	ENSG00000231711.2|LINC00899|lncRNA|chr22:46042573:46042640:-	0	-
#Deleted in new
chr22	46042573	46043699	ENSG00000231711.2|LINC00899|lncRNA|chr22:46042573:46043699:-	0	-
#Deleted in new
chr22	46043562	46043699	ENSG00000231711.2|LINC00899|lncRNA|chr22:46043562:46043699:-	0	-
#Partially deleted in new
chr22	46043939	46044610	ENSG00000231711.2|LINC00899|lncRNA|chr22:46043939:46044610:-	0	-
#Deleted in new
chr22	46049477	46051899	ENSG00000182257.6|PRR34|pc|chr22:46049477:46051899:-	0	-
#Partially deleted in new
chr22	46163302	46165347	ENSG00000280384.1|FP325332.1|lncRNA|chr22:46163302:46165347:+	0	+
#Deleted in new
chr22	46175988	46176144	ENSG00000186951.16|PPARA|pc|chr22:46175988:46176144:+	0	+
#Deleted in new
chr22	46176747	46176836	ENSG00000186951.16|PPARA|pc|chr22:46176747:46176836:+	0	+
#Deleted in new
chr22	46176752	46176836	ENSG00000186951.16|PPARA|pc|chr22:46176752:46176836:+	0	+
#Deleted in new
chr22	46176765	46176836	ENSG00000186951.16|PPARA|pc|chr22:46176765:46176836:+	0	+
#Deleted in new
chr22	46246672	46246795	ENSG00000205643.10|CDPF1|pc|chr22:46246672:46246795:-	0	-
#Partially deleted in new
chr22	46250255	46250679	ENSG00000205643.10|CDPF1|pc|chr22:46250255:46250679:-	0	-
#Deleted in new
chr22	46269141	46269192	ENSG00000075234.16|TTC38|pc|chr22:46269141:46269192:+	0	+
#Deleted in new
chr22	46269141	46269289	ENSG00000075234.16|TTC38|pc|chr22:46269141:46269289:+	0	+
#Deleted in new
chr22	46281970	46282151	ENSG00000075234.16|TTC38|pc|chr22:46281970:46282151:+	0	+
#Deleted in new
chr22	46292202	46292328	ENSG00000075234.16|TTC38|pc|chr22:46292202:46292328:+	0	+
#Partially deleted in new
chr22	46295142	46296660	ENSG00000277232.2|GTSE1-AS1|lncRNA|chr22:46295142:46296660:-	0	-
#Deleted in new
chr22	46295694	46296000	ENSG00000277232.2|GTSE1-AS1|lncRNA|chr22:46295694:46296000:-	0	-
#Split in new
chr22	46326435	46327316	ENSG00000075218.18|GTSE1|pc|chr22:46326435:46327316:+	0	+
#Partially deleted in new
chr22	46330874	46331732	ENSG00000100416.12|TRMU|pc|chr22:46330874:46331732:+	0	+
#Deleted in new
chr22	46331446	46331732	ENSG00000100416.12|TRMU|pc|chr22:46331446:46331732:+	0	+
#Deleted in new
chr22	46333081	46333699	ENSG00000100416.12|TRMU|pc|chr22:46333081:46333699:+	0	+
#Deleted in new
chr22	46335892	46336106	ENSG00000100416.12|TRMU|pc|chr22:46335892:46336106:+	0	+
#Deleted in new
chr22	46335894	46336106	ENSG00000100416.12|TRMU|pc|chr22:46335894:46336106:+	0	+
#Deleted in new
chr22	46335957	46336106	ENSG00000100416.12|TRMU|pc|chr22:46335957:46336106:+	0	+
#Deleted in new
chr22	46336389	46336666	ENSG00000100416.12|TRMU|pc|chr22:46336389:46336666:+	0	+
#Deleted in new
chr22	46377347	46377624	ENSG00000075275.16|CELSR1|pc|chr22:46377347:46377624:-	0	-
#Deleted in new
chr22	46530307	46530500	ENSG00000075275.16|CELSR1|pc|chr22:46530307:46530500:-	0	-
#Deleted in new
chr22	46671049	46671167	ENSG00000075240.16|GRAMD4|pc|chr22:46671049:46671167:+	0	+
#Deleted in new
chr22	46693674	46693812	ENSG00000100422.13|CERK|pc|chr22:46693674:46693812:-	0	-
#Partially deleted in new
chr22	46763741	46764286	ENSG00000054611.13|TBC1D22A|pc|chr22:46763741:46764286:+	0	+
#Deleted in new
chr22	46788979	46789037	ENSG00000054611.13|TBC1D22A|pc|chr22:46788979:46789037:+	0	+
#Deleted in new
chr22	46789311	46789471	ENSG00000054611.13|TBC1D22A|pc|chr22:46789311:46789471:+	0	+
#Deleted in new
chr22	46914091	46916042	ENSG00000280080.2|TBC1D22A-AS1|lncRNA|chr22:46914091:46916042:-	0	-
#Deleted in new
chr22	46915327	46915908	ENSG00000280080.2|TBC1D22A-AS1|lncRNA|chr22:46915327:46915908:-	0	-
#Deleted in new
chr22	47115837	47117215	ENSG00000278881.2|FP325331.1|lncRNA|chr22:47115837:47117215:-	0	-
#Deleted in new
chr22	47115837	47117217	ENSG00000278881.2|FP325331.1|lncRNA|chr22:47115837:47117217:-	0	-
#Deleted in new
chr22	47259365	47261007	ENSG00000280312.1|Z83836.1|lncRNA|chr22:47259365:47261007:+	0	+
#Deleted in new
chr22	47345568	47345724	ENSG00000224715.1|Z82186.1|lncRNA|chr22:47345568:47345724:+	0	+
#Deleted in new
chr22	47363591	47363709	ENSG00000224715.1|Z82186.1|lncRNA|chr22:47363591:47363709:+	0	+
#Deleted in new
chr22	47366767	47366815	ENSG00000224715.1|Z82186.1|lncRNA|chr22:47366767:47366815:+	0	+
#Deleted in new
chr22	47461298	47461829	ENSG00000218357.3|LINC01644|lncRNA|chr22:47461298:47461829:-	0	-
#Deleted in new
chr22	47486729	47487088	ENSG00000218357.3|LINC01644|lncRNA|chr22:47486729:47487088:-	0	-
#Deleted in new
chr22	47486729	47487111	ENSG00000218357.3|LINC01644|lncRNA|chr22:47486729:47487111:-	0	-
#Deleted in new
chr22	47622455	47622952	ENSG00000205634.6|LINC00898|lncRNA|chr22:47622455:47622952:-	0	-
#Partially deleted in new
chr22	47624467	47625633	ENSG00000205634.6|LINC00898|lncRNA|chr22:47624467:47625633:-	0	-
#Partially deleted in new
chr22	47627161	47627242	ENSG00000205634.6|LINC00898|lncRNA|chr22:47627161:47627242:-	0	-
#Partially deleted in new
chr22	47627308	47627577	ENSG00000205634.6|LINC00898|lncRNA|chr22:47627308:47627577:-	0	-
#Deleted in new
chr22	47629327	47629902	ENSG00000205634.6|LINC00898|lncRNA|chr22:47629327:47629902:-	0	-
#Deleted in new
chr22	47629327	47631569	ENSG00000205634.6|LINC00898|lncRNA|chr22:47629327:47631569:-	0	-
#Deleted in new
chr22	47631673	47631886	ENSG00000224271.5|AL117329.1|lncRNA|chr22:47631673:47631886:+	0	+
#Deleted in new
chr22	47631689	47631886	ENSG00000224271.5|AL117329.1|lncRNA|chr22:47631689:47631886:+	0	+
#Deleted in new
chr22	47635179	47635353	ENSG00000224271.5|AL117329.1|lncRNA|chr22:47635179:47635353:+	0	+
#Deleted in new
chr22	47635179	47635624	ENSG00000224271.5|AL117329.1|lncRNA|chr22:47635179:47635624:+	0	+
#Deleted in new
chr22	47686199	47686312	ENSG00000224271.5|AL117329.1|lncRNA|chr22:47686199:47686312:+	0	+
#Deleted in new
chr22	47686240	47686312	ENSG00000224271.5|AL117329.1|lncRNA|chr22:47686240:47686312:+	0	+
#Deleted in new
chr22	47686574	47686695	ENSG00000224271.5|AL117329.1|lncRNA|chr22:47686574:47686695:+	0	+
#Deleted in new
chr22	47690661	47690847	ENSG00000224271.5|AL117329.1|lncRNA|chr22:47690661:47690847:+	0	+
#Deleted in new
chr22	47854910	47855600	ENSG00000224271.5|AL117329.1|lncRNA|chr22:47854910:47855600:+	0	+
#Deleted in new
chr22	47860670	47860818	ENSG00000230345.1|AL121580.1|lncRNA|chr22:47860670:47860818:+	0	+
#Deleted in new
chr2	24791501	24791606	ENSG00000184924.5|PTRHD1|pc|chr2:24791501:24791606:-	0	-
#Split in new
chr22	47916727	47926264	ENSG00000279712.1|FP325330.3|lncRNA|chr22:47916727:47926264:+	0	+
#Deleted in new
chr2	24792383	24792584	ENSG00000184924.5|PTRHD1|pc|chr2:24792383:24792584:-	0	-
#Deleted in new
chr2	24792433	24792584	ENSG00000184924.5|PTRHD1|pc|chr2:24792433:24792584:-	0	-
#Deleted in new
chr22	48044709	48045001	ENSG00000235154.1|FP325330.1|lncRNA|chr22:48044709:48045001:-	0	-
#Deleted in new
chr22	48139460	48139696	ENSG00000238192.1|BX284656.2|lncRNA|chr22:48139460:48139696:-	0	-
#Deleted in new
chr22	48142005	48142044	ENSG00000229275.1|BX284656.1|lncRNA|chr22:48142005:48142044:+	0	+
#Partially deleted in new
chr2	24820383	24820451	ENSG00000138031.14|ADCY3|pc|chr2:24820383:24820451:-	0	-
#Deleted in new
chr2	24838846	24838912	ENSG00000138031.14|ADCY3|pc|chr2:24838846:24838912:-	0	-
#Partially deleted in new
chr22	48448889	48449339	ENSG00000233179.1|Z82249.1|lncRNA|chr22:48448889:48449339:+	0	+
#Deleted in new
chr22	48693246	48693381	ENSG00000219438.8|FAM19A5|pc|chr22:48693246:48693381:+	0	+
#Deleted in new
chr2	24877921	24878027	ENSG00000138031.14|ADCY3|pc|chr2:24877921:24878027:-	0	-
#Deleted in new
chr22	48850757	48850912	ENSG00000219438.8|FAM19A5|pc|chr22:48850757:48850912:+	0	+
#Deleted in new
chr22	48866769	48866847	ENSG00000205632.3|LINC01310|lncRNA|chr22:48866769:48866847:+	0	+
#Deleted in new
chr22	48885052	48885112	ENSG00000205632.3|LINC01310|lncRNA|chr22:48885052:48885112:+	0	+
#Deleted in new
chr22	48887012	48887212	ENSG00000205632.3|LINC01310|lncRNA|chr22:48887012:48887212:+	0	+
#Deleted in new
chr22	48892665	48893132	ENSG00000205632.3|LINC01310|lncRNA|chr22:48892665:48893132:+	0	+
#Deleted in new
chr22	48894403	48894615	ENSG00000205632.3|LINC01310|lncRNA|chr22:48894403:48894615:+	0	+
#Deleted in new
chr22	48894734	48896143	ENSG00000205632.3|LINC01310|lncRNA|chr22:48894734:48896143:+	0	+
#Partially deleted in new
chr22	49423441	49423692	ENSG00000188511.12|C22orf34|lncRNA|chr22:49423441:49423692:-	0	-
#Deleted in new
chr22	49425321	49425437	ENSG00000188511.12|C22orf34|lncRNA|chr22:49425321:49425437:-	0	-
#Partially deleted in new
chr22	49436223	49436375	ENSG00000188511.12|C22orf34|lncRNA|chr22:49436223:49436375:-	0	-
#Deleted in new
chr22	49440875	49441212	ENSG00000188511.12|C22orf34|lncRNA|chr22:49440875:49441212:-	0	-
#Deleted in new
chr2	24953549	24953635	ENSG00000115137.11|DNAJC27|pc|chr2:24953549:24953635:-	0	-
#Deleted in new
chr22	49548680	49548752	ENSG00000212939.2|Z97192.1|lncRNA|chr22:49548680:49548752:+	0	+
#Partially deleted in new
chr22	49552651	49556473	ENSG00000212939.2|Z97192.1|lncRNA|chr22:49552651:49556473:+	0	+
#Deleted in new
chr22	49575344	49575426	ENSG00000213279.2|Z97192.2|lncRNA|chr22:49575344:49575426:-	0	-
#Deleted in new
chr22	49615575	49615716	ENSG00000235111.1|Z97192.3|lncRNA|chr22:49615575:49615716:-	0	-
#Deleted in new
chr22	49619641	49620269	ENSG00000188511.12|C22orf34|lncRNA|chr22:49619641:49620269:-	0	-
#Partially deleted in new
chr22	49619643	49620660	ENSG00000188511.12|C22orf34|lncRNA|chr22:49619643:49620660:-	0	-
#Deleted in new
chr22	49622194	49623610	ENSG00000188511.12|C22orf34|lncRNA|chr22:49622194:49623610:-	0	-
#Partially deleted in new
chr22	49624369	49624681	ENSG00000188511.12|C22orf34|lncRNA|chr22:49624369:49624681:-	0	-
#Partially deleted in new
chr22	49624446	49624681	ENSG00000188511.12|C22orf34|lncRNA|chr22:49624446:49624681:-	0	-
#Deleted in new
chr22	49624857	49624920	ENSG00000188511.12|C22orf34|lncRNA|chr22:49624857:49624920:-	0	-
#Deleted in new
chr22	49624857	49624936	ENSG00000188511.12|C22orf34|lncRNA|chr22:49624857:49624936:-	0	-
#Deleted in new
chr22	49626842	49626894	ENSG00000188511.12|C22orf34|lncRNA|chr22:49626842:49626894:-	0	-
#Deleted in new
chr22	49626842	49627047	ENSG00000188511.12|C22orf34|lncRNA|chr22:49626842:49627047:-	0	-
#Partially deleted in new
chr2	24963114	24963474	ENSG00000115137.11|DNAJC27|pc|chr2:24963114:24963474:-	0	-
#Deleted in new
chr22	49656623	49657430	ENSG00000188511.12|C22orf34|lncRNA|chr22:49656623:49657430:-	0	-
#Deleted in new
chr22	49657404	49657457	ENSG00000188511.12|C22orf34|lncRNA|chr22:49657404:49657457:-	0	-
#Deleted in new
chr22	49657404	49657504	ENSG00000188511.12|C22orf34|lncRNA|chr22:49657404:49657504:-	0	-
#Deleted in new
chr22	49657404	49657542	ENSG00000188511.12|C22orf34|lncRNA|chr22:49657404:49657542:-	0	-
#Partially deleted in new
chr2	24972125	24972232	ENSG00000224165.5|DNAJC27-AS1|lncRNA|chr2:24972125:24972232:+	0	+
#Partially deleted in new
chr2	24972143	24972232	ENSG00000224165.5|DNAJC27-AS1|lncRNA|chr2:24972143:24972232:+	0	+
#Deleted in new
chr2	24972164	24972330	ENSG00000224165.5|DNAJC27-AS1|lncRNA|chr2:24972164:24972330:+	0	+
#Deleted in new
chr2	24972182	24972232	ENSG00000224165.5|DNAJC27-AS1|lncRNA|chr2:24972182:24972232:+	0	+
#Deleted in new
chr22	49723510	49724506	ENSG00000226954.1|AL023802.1|lncRNA|chr22:49723510:49724506:-	0	-
#Partially deleted in new
chr22	49805451	49807208	ENSG00000279345.1|Z98885.3|lncRNA|chr22:49805451:49807208:+	0	+
#Deleted in new
chr22	49820832	49820986	ENSG00000100425.18|BRD1|pc|chr22:49820832:49820986:-	0	-
#Partially deleted in new
chr22	49832615	49833687	ENSG00000260613.1|Z98885.2|lncRNA|chr22:49832615:49833687:-	0	-
#Deleted in new
chr22	49837291	49837786	ENSG00000260613.1|Z98885.2|lncRNA|chr22:49837291:49837786:-	0	-
#Partially deleted in new
chr22	49851424	49853364	ENSG00000279494.1|AL117328.2|lncRNA|chr22:49851424:49853364:+	0	+
#Partially deleted in new
chr22	49900228	49904066	ENSG00000182858.13|ALG12|pc|chr22:49900228:49904066:-	0	-
#Deleted in new
chr22	49922296	49922443	ENSG00000184164.14|CRELD2|pc|chr22:49922296:49922443:+	0	+
#Deleted in new
chr22	49924985	49925129	ENSG00000184164.14|CRELD2|pc|chr22:49924985:49925129:+	0	+
#Deleted in new
chr22	49933197	49934074	ENSG00000278869.1|BX539320.1|lncRNA|chr22:49933197:49934074:-	0	-
#Deleted in new
chr22	49994512	49996860	ENSG00000188263.10|IL17REL|pc|chr22:49994512:49996860:-	0	-
#Deleted in new
chr22	49996993	49997074	ENSG00000188263.10|IL17REL|pc|chr22:49996993:49997074:-	0	-
#Deleted in new
chr22	49997319	49997416	ENSG00000188263.10|IL17REL|pc|chr22:49997319:49997416:-	0	-
#Deleted in new
chr22	49997684	49997742	ENSG00000188263.10|IL17REL|pc|chr22:49997684:49997742:-	0	-
#Deleted in new
chr22	49998024	49998069	ENSG00000188263.10|IL17REL|pc|chr22:49998024:49998069:-	0	-
#Deleted in new
chr22	49998136	49998309	ENSG00000188263.10|IL17REL|pc|chr22:49998136:49998309:-	0	-
#Deleted in new
chr22	49999290	49999345	ENSG00000188263.10|IL17REL|pc|chr22:49999290:49999345:-	0	-
#Deleted in new
chr22	49999430	49999502	ENSG00000188263.10|IL17REL|pc|chr22:49999430:49999502:-	0	-
#Deleted in new
chr22	49999827	49999967	ENSG00000188263.10|IL17REL|pc|chr22:49999827:49999967:-	0	-
#Deleted in new
chr22	50000477	50000592	ENSG00000188263.10|IL17REL|pc|chr22:50000477:50000592:-	0	-
#Deleted in new
chr22	50000753	50000863	ENSG00000188263.10|IL17REL|pc|chr22:50000753:50000863:-	0	-
#Deleted in new
chr22	50001081	50001231	ENSG00000188263.10|IL17REL|pc|chr22:50001081:50001231:-	0	-
#Deleted in new
chr22	50008636	50008664	ENSG00000188263.10|IL17REL|pc|chr22:50008636:50008664:-	0	-
#Deleted in new
chr22	50008636	50008692	ENSG00000188263.10|IL17REL|pc|chr22:50008636:50008692:-	0	-
#Deleted in new
chr22	50008982	50009063	ENSG00000188263.10|IL17REL|pc|chr22:50008982:50009063:-	0	-
#Deleted in new
chr22	50012544	50012659	ENSG00000188263.10|IL17REL|pc|chr22:50012544:50012659:-	0	-
#Deleted in new
chr22	50015122	50015283	ENSG00000138892.11|TTLL8|pc|chr22:50015122:50015283:-	0	-
#Deleted in new
chr22	50015126	50015283	ENSG00000138892.11|TTLL8|pc|chr22:50015126:50015283:-	0	-
#Deleted in new
chr22	50016421	50016562	ENSG00000138892.11|TTLL8|pc|chr22:50016421:50016562:-	0	-
#Deleted in new
chr2	25003984	25004110	ENSG00000224165.5|DNAJC27-AS1|lncRNA|chr2:25003984:25004110:+	0	+
#Deleted in new
chr2	25004066	25004110	ENSG00000224165.5|DNAJC27-AS1|lncRNA|chr2:25004066:25004110:+	0	+
#Deleted in new
chr22	50054575	50054626	ENSG00000138892.11|TTLL8|pc|chr22:50054575:50054626:-	0	-
#Deleted in new
chr22	50072744	50072815	ENSG00000100427.15|MLC1|pc|chr22:50072744:50072815:-	0	-
#Deleted in new
chr22	50074607	50074684	ENSG00000100427.15|MLC1|pc|chr22:50074607:50074684:-	0	-
#Partially deleted in new
chr22	50090044	50091462	ENSG00000073146.15|MOV10L1|pc|chr22:50090044:50091462:+	0	+
#Partially deleted in new
chr22	50090053	50090512	ENSG00000073146.15|MOV10L1|pc|chr22:50090053:50090512:+	0	+
#Deleted in new
chr22	50090255	50090397	ENSG00000073146.15|MOV10L1|pc|chr22:50090255:50090397:+	0	+
#Deleted in new
chr22	50090255	50090512	ENSG00000073146.15|MOV10L1|pc|chr22:50090255:50090512:+	0	+
#Partially deleted in new
chr22	50092744	50096437	ENSG00000280395.1|AL034546.1|lncRNA|chr22:50092744:50096437:+	0	+
#Deleted in new
chr22	50146964	50147149	ENSG00000073146.15|MOV10L1|pc|chr22:50146964:50147149:+	0	+
#Deleted in new
chr22	50190597	50190648	ENSG00000170638.9|TRABD|pc|chr22:50190597:50190648:+	0	+
#Partially deleted in new
chr22	50191723	50192402	ENSG00000273188.1|AL022328.3|lncRNA|chr22:50191723:50192402:-	0	-
#Deleted in new
chr22	50200075	50200837	ENSG00000273253.2|AL022328.4|lncRNA|chr22:50200075:50200837:-	0	-
#Deleted in new
chr22	50205584	50206062	ENSG00000272836.1|AL022328.1|lncRNA|chr22:50205584:50206062:-	0	-
#Partially deleted in new
chr22	50209211	50209542	ENSG00000273137.1|AL022328.2|lncRNA|chr22:50209211:50209542:-	0	-
#Deleted in new
chr22	50257562	50257660	ENSG00000188130.13|MAPK12|pc|chr22:50257562:50257660:-	0	-
#Deleted in new
chr22	50257688	50257945	ENSG00000188130.13|MAPK12|pc|chr22:50257688:50257945:-	0	-
#Deleted in new
chr2	25027310	25027517	ENSG00000224165.5|DNAJC27-AS1|lncRNA|chr2:25027310:25027517:+	0	+
#Deleted in new
chr22	50284844	50284913	ENSG00000196576.14|PLXNB2|pc|chr22:50284844:50284913:-	0	-
#Deleted in new
chr2	25028548	25028640	ENSG00000224165.5|DNAJC27-AS1|lncRNA|chr2:25028548:25028640:+	0	+
#Deleted in new
chr22	50391866	50392015	ENSG00000100239.15|PPP6R2|pc|chr22:50391866:50392015:+	0	+
#Partially deleted in new
chr22	50482566	50486440	ENSG00000128165.8|ADM2|pc|chr22:50482566:50486440:+	0	+
#Partially deleted in new
chr22	50489747	50490648	ENSG00000100253.12|MIOX|pc|chr22:50489747:50490648:+	0	+
#Deleted in new
chr22	50515719	50515774	ENSG00000025770.18|NCAPH2|pc|chr22:50515719:50515774:+	0	+
#Partially deleted in new
chr22	50520409	50521036	ENSG00000025770.18|NCAPH2|pc|chr22:50520409:50521036:+	0	+
#Deleted in new
chr22	50525441	50525604	ENSG00000130489.14|SCO2|pc|chr22:50525441:50525604:-	0	-
#Deleted in new
chr22	50525471	50525606	ENSG00000130489.14|SCO2|pc|chr22:50525471:50525606:-	0	-
#Deleted in new
chr22	50542304	50542906	ENSG00000272666.1|U62317.2|lncRNA|chr22:50542304:50542906:-	0	-
#Deleted in new
chr22	50542649	50543011	ENSG00000273272.1|U62317.5|lncRNA|chr22:50542649:50543011:+	0	+
#Deleted in new
chr22	50582028	50582095	ENSG00000100288.19|CHKB|pc|chr22:50582028:50582095:-	0	-
#Partially deleted in new
chr22	50583025	50583323	ENSG00000205559.3|CHKB-AS1|lncRNA|chr22:50583025:50583323:+	0	+
#Deleted in new
chr22	50583597	50583877	ENSG00000205559.3|CHKB-AS1|lncRNA|chr22:50583597:50583877:+	0	+
#Deleted in new
chr22	50597151	50597599	ENSG00000272940.1|U62317.4|lncRNA|chr22:50597151:50597599:+	0	+
#Deleted in new
chr22	50622753	50623027	ENSG00000100299.17|ARSA|pc|chr22:50622753:50623027:-	0	-
#Deleted in new
chr22	50622753	50623326	ENSG00000100299.17|ARSA|pc|chr22:50622753:50623326:-	0	-
#Deleted in new
chr22	50623773	50623895	ENSG00000100299.17|ARSA|pc|chr22:50623773:50623895:-	0	-
#Deleted in new
chr22	50724126	50724153	ENSG00000251322.7|SHANK3|pc|chr22:50724126:50724153:+	0	+
#Partially deleted in new
chr22	50771209	50773109	ENSG00000079974.17|RABL2B|pc|chr22:50771209:50773109:-	0	-
#Deleted in new
chr22	50780612	50780718	ENSG00000079974.17|RABL2B|pc|chr22:50780612:50780718:-	0	-
#Deleted in new
chr22	50782768	50783045	ENSG00000079974.17|RABL2B|pc|chr22:50782768:50783045:-	0	-
#Deleted in new
chr22	50782890	50783045	ENSG00000079974.17|RABL2B|pc|chr22:50782890:50783045:-	0	-
#Partially deleted in new
chr22	50783038	50783286	ENSG00000079974.17|RABL2B|pc|chr22:50783038:50783286:-	0	-
#Partially deleted in new
chr22	50783044	50783286	ENSG00000079974.17|RABL2B|pc|chr22:50783044:50783286:-	0	-
#Deleted in new
chr2	25115987	25116103	ENSG00000084710.13|EFR3B|pc|chr2:25115987:25116103:+	0	+
#Partially deleted in new
chr2	25144959	25147888	ENSG00000084710.13|EFR3B|pc|chr2:25144959:25147888:+	0	+
#Deleted in new
chr2	25204312	25204549	ENSG00000230452.1|LINC01381|lncRNA|chr2:25204312:25204549:+	0	+
#Deleted in new
chr2	25208973	25209202	ENSG00000230452.1|LINC01381|lncRNA|chr2:25208973:25209202:+	0	+
#Partially deleted in new
chr2	25249656	25249724	ENSG00000119772.16|DNMT3A|pc|chr2:25249656:25249724:-	0	-
#Deleted in new
chr2	25421116	25421223	ENSG00000224220.1|AC104699.1|lncRNA|chr2:25421116:25421223:+	0	+
#Deleted in new
chr2	25426585	25426715	ENSG00000224220.1|AC104699.1|lncRNA|chr2:25426585:25426715:+	0	+
#Partially deleted in new
chr2	25427534	25428016	ENSG00000138101.18|DTNB|pc|chr2:25427534:25428016:-	0	-
#Deleted in new
chr2	25649836	25649930	ENSG00000138101.18|DTNB|pc|chr2:25649836:25649930:-	0	-
#Deleted in new
chr2	25650021	25650222	ENSG00000138101.18|DTNB|pc|chr2:25650021:25650222:-	0	-
#Deleted in new
chr2	25780248	25780309	ENSG00000143970.16|ASXL2|pc|chr2:25780248:25780309:-	0	-
#Deleted in new
chr2	25830810	25830891	ENSG00000143970.16|ASXL2|pc|chr2:25830810:25830891:-	0	-
#Deleted in new
chr2	25934032	25934156	ENSG00000084731.14|KIF3C|pc|chr2:25934032:25934156:-	0	-
#Deleted in new
chr2	25938234	25938348	ENSG00000084731.14|KIF3C|pc|chr2:25938234:25938348:-	0	-
#Deleted in new
chr2	259422	260292	ENSG00000035115.21|SH3YL1|pc|chr2:259422:260292:-	0	-
#Deleted in new
chr2	260084	260702	ENSG00000035115.21|SH3YL1|pc|chr2:260084:260702:-	0	-
#Deleted in new
chr2	260084	260708	ENSG00000035115.21|SH3YL1|pc|chr2:260084:260708:-	0	-
#Deleted in new
chr2	260084	261130	ENSG00000035115.21|SH3YL1|pc|chr2:260084:261130:-	0	-
#Deleted in new
chr2	260084	261323	ENSG00000035115.21|SH3YL1|pc|chr2:260084:261323:-	0	-
#Deleted in new
chr2	260256	260720	ENSG00000035115.21|SH3YL1|pc|chr2:260256:260720:-	0	-
#Deleted in new
chr2	260342	260702	ENSG00000035115.21|SH3YL1|pc|chr2:260342:260702:-	0	-
#Deleted in new
chr2	260511	260702	ENSG00000035115.21|SH3YL1|pc|chr2:260511:260702:-	0	-
#Deleted in new
chr2	260803	260897	ENSG00000035115.21|SH3YL1|pc|chr2:260803:260897:-	0	-
#Deleted in new
chr2	26098529	26098577	ENSG00000084733.10|RAB10|pc|chr2:26098529:26098577:+	0	+
#Partially deleted in new
chr2	26180715	26182493	ENSG00000157833.12|GAREM2|pc|chr2:26180715:26182493:+	0	+
#Deleted in new
chr2	26235090	26235304	ENSG00000084754.10|HADHA|pc|chr2:26235090:26235304:-	0	-
#Deleted in new
chr2	26243169	26243269	ENSG00000138029.13|HADHB|pc|chr2:26243169:26243269:+	0	+
#Deleted in new
chr2	26260537	26261593	ENSG00000138029.13|HADHB|pc|chr2:26260537:26261593:+	0	+
#Deleted in new
chr2	26261020	26261063	ENSG00000138029.13|HADHB|pc|chr2:26261020:26261063:+	0	+
#Partially deleted in new
chr2	262630	262750	ENSG00000035115.21|SH3YL1|pc|chr2:262630:262750:-	0	-
#Partially deleted in new
chr2	262630	262786	ENSG00000035115.21|SH3YL1|pc|chr2:262630:262786:-	0	-
#Partially deleted in new
chr2	264083	264179	ENSG00000035115.21|SH3YL1|pc|chr2:264083:264179:-	0	-
#Partially deleted in new
chr2	264083	264392	ENSG00000035115.21|SH3YL1|pc|chr2:264083:264392:-	0	-
#Deleted in new
chr2	264139	264498	ENSG00000143727.15|ACP1|pc|chr2:264139:264498:+	0	+
#Deleted in new
chr2	264143	264158	ENSG00000035115.21|SH3YL1|pc|chr2:264143:264158:-	0	-
#Deleted in new
chr2	2641988	2642400	ENSG00000234929.1|AC018685.2|lncRNA|chr2:2641988:2642400:-	0	-
#Deleted in new
chr2	264541	264568	ENSG00000035115.21|SH3YL1|pc|chr2:264541:264568:-	0	-
#Deleted in new
chr2	264702	264743	ENSG00000035115.21|SH3YL1|pc|chr2:264702:264743:-	0	-
#Partially deleted in new
chr2	264722	264922	ENSG00000143727.15|ACP1|pc|chr2:264722:264922:+	0	+
#Deleted in new
chr2	264781	264810	ENSG00000035115.21|SH3YL1|pc|chr2:264781:264810:-	0	-
#Deleted in new
chr2	264781	264824	ENSG00000035115.21|SH3YL1|pc|chr2:264781:264824:-	0	-
#Partially deleted in new
chr2	264781	264866	ENSG00000035115.21|SH3YL1|pc|chr2:264781:264866:-	0	-
#Deleted in new
chr2	265204	265278	ENSG00000143727.15|ACP1|pc|chr2:265204:265278:+	0	+
#Deleted in new
chr2	26623413	26623627	ENSG00000157884.10|CIB4|pc|chr2:26623413:26623627:-	0	-
#Partially deleted in new
chr2	266293	266398	ENSG00000035115.21|SH3YL1|pc|chr2:266293:266398:-	0	-
#Deleted in new
chr2	26800928	26801067	ENSG00000115163.14|CENPA|pc|chr2:26800928:26801067:+	0	+
#Partially deleted in new
chr2	26984775	26984965	ENSG00000205500.8|AC013472.1|lncRNA|chr2:26984775:26984965:-	0	-
#Partially deleted in new
chr2	26984777	26984965	ENSG00000205500.8|AC013472.1|lncRNA|chr2:26984777:26984965:-	0	-
#Deleted in new
chr2	26986512	26986556	ENSG00000205500.8|AC013472.1|lncRNA|chr2:26986512:26986556:-	0	-
#Deleted in new
chr2	26986660	26986770	ENSG00000205500.8|AC013472.1|lncRNA|chr2:26986660:26986770:-	0	-
#Deleted in new
chr2	26995475	26995554	ENSG00000205500.8|AC013472.1|lncRNA|chr2:26995475:26995554:-	0	-
#Deleted in new
chr2	26996871	26996920	ENSG00000205500.8|AC013472.1|lncRNA|chr2:26996871:26996920:-	0	-
#Deleted in new
chr2	27002045	27002136	ENSG00000084764.10|MAPRE3|pc|chr2:27002045:27002136:+	0	+
#Deleted in new
chr2	27009775	27009807	ENSG00000230286.1|AC013472.2|lncRNA|chr2:27009775:27009807:-	0	-
#Deleted in new
chr2	27013934	27013973	ENSG00000205500.8|AC013472.1|lncRNA|chr2:27013934:27013973:-	0	-
#Partially deleted in new
chr2	27050179	27050264	ENSG00000231636.1|AGBL5-AS1|lncRNA|chr2:27050179:27050264:-	0	-
#Deleted in new
chr2	27061645	27061815	ENSG00000229122.1|AGBL5-IT1|lncRNA|chr2:27061645:27061815:+	0	+
#Partially deleted in new
chr2	27099664	27100751	ENSG00000138030.12|KHK|pc|chr2:27099664:27100751:+	0	+
#Partially deleted in new
chr2	27099664	27100772	ENSG00000138030.12|KHK|pc|chr2:27099664:27100772:+	0	+
#Deleted in new
chr2	27100415	27100542	ENSG00000138028.15|CGREF1|pc|chr2:27100415:27100542:-	0	-
#Deleted in new
chr2	27110672	27110968	ENSG00000138028.15|CGREF1|pc|chr2:27110672:27110968:-	0	-
#Deleted in new
chr2	27240095	27240218	ENSG00000084774.13|CAD|pc|chr2:27240095:27240218:+	0	+
#Partially deleted in new
chr2	27275529	27275817	ENSG00000115194.10|SLC30A3|pc|chr2:27275529:27275817:-	0	-
#Deleted in new
chr2	2729907	2730093	ENSG00000227364.1|AC018685.1|lncRNA|chr2:2729907:2730093:-	0	-
#Deleted in new
chr2	27299529	27299655	ENSG00000138100.13|TRIM54|pc|chr2:27299529:27299655:+	0	+
#Deleted in new
chr2	2730775	2730957	ENSG00000227364.1|AC018685.1|lncRNA|chr2:2730775:2730957:-	0	-
#Deleted in new
chr2	27337436	27337444	ENSG00000234945.7|GTF3C2-AS1|lncRNA|chr2:27337436:27337444:+	0	+
#Partially deleted in new
chr2	27337436	27337459	ENSG00000234945.7|GTF3C2-AS1|lncRNA|chr2:27337436:27337459:+	0	+
#Deleted in new
chr2	27339583	27339805	ENSG00000234945.7|GTF3C2-AS1|lncRNA|chr2:27339583:27339805:+	0	+
#Deleted in new
chr2	27339583	27340008	ENSG00000234945.7|GTF3C2-AS1|lncRNA|chr2:27339583:27340008:+	0	+
#Deleted in new
chr2	27340087	27340237	ENSG00000234945.7|GTF3C2-AS1|lncRNA|chr2:27340087:27340237:+	0	+
#Deleted in new
chr2	27340265	27340373	ENSG00000234945.7|GTF3C2-AS1|lncRNA|chr2:27340265:27340373:+	0	+
#Deleted in new
chr2	27340269	27340373	ENSG00000234945.7|GTF3C2-AS1|lncRNA|chr2:27340269:27340373:+	0	+
#Deleted in new
chr2	27340647	27340824	ENSG00000234945.7|GTF3C2-AS1|lncRNA|chr2:27340647:27340824:+	0	+
#Deleted in new
chr2	27350313	27350632	ENSG00000115207.13|GTF3C2|pc|chr2:27350313:27350632:-	0	-
#Deleted in new
chr2	27357807	27357902	ENSG00000234072.1|AC074117.1|lncRNA|chr2:27357807:27357902:+	0	+
#Deleted in new
chr2	27357807	27358190	ENSG00000234072.1|AC074117.1|lncRNA|chr2:27357807:27358190:+	0	+
#Deleted in new
chr2	27357807	27360256	ENSG00000234072.1|AC074117.1|lncRNA|chr2:27357807:27360256:+	0	+
#Partially deleted in new
chr2	27386595	27387158	ENSG00000115241.10|PPM1G|pc|chr2:27386595:27387158:-	0	-
#Deleted in new
chr2	27509526	27509791	ENSG00000084734.8|GCKR|pc|chr2:27509526:27509791:+	0	+
#Partially deleted in new
chr2	275139	275611	ENSG00000143727.15|ACP1|pc|chr2:275139:275611:+	0	+
#Duplicated in new
chr2	27576521	27582721	ENSG00000221843.4|C2orf16|pc|chr2:27576521:27582721:+	0	+
#Deleted in new
chr2	27668636	27668750	ENSG00000163798.13|SLC4A1AP|pc|chr2:27668636:27668750:+	0	+
#Partially deleted in new
chr2	27691557	27693754	ENSG00000163798.13|SLC4A1AP|pc|chr2:27691557:27693754:+	0	+
#Deleted in new
chr2	27782571	27782694	ENSG00000243147.7|MRPL33|pc|chr2:27782571:27782694:+	0	+
#Deleted in new
chr2	27869771	27870890	ENSG00000171174.13|RBKS|pc|chr2:27869771:27870890:-	0	-
#Split in new
chr2	28307690	28309574	ENSG00000223522.1|AC093690.1|lncRNA|chr2:28307690:28309574:-	0	-
#Deleted in new
chr2	2836918	2837006	ENSG00000237720.1|AC011995.2|lncRNA|chr2:2836918:2837006:-	0	-
#Partially deleted in new
chr2	2838148	2838391	ENSG00000237720.1|AC011995.2|lncRNA|chr2:2838148:2838391:-	0	-
#Deleted in new
chr2	28387760	28387911	ENSG00000229951.5|FLJ31356|lncRNA|chr2:28387760:28387911:-	0	-
#Deleted in new
chr2	28425944	28426719	ENSG00000270210.1|AC104695.2|lncRNA|chr2:28425944:28426719:+	0	+
#Deleted in new
chr2	28457144	28457197	ENSG00000163803.12|PLB1|pc|chr2:28457144:28457197:+	0	+
#Partially deleted in new
chr2	28642857	28643747	ENSG00000163803.12|PLB1|pc|chr2:28642857:28643747:+	0	+
#Partially deleted in new
chr2	28642857	28643788	ENSG00000163803.12|PLB1|pc|chr2:28642857:28643788:+	0	+
#Partially deleted in new
chr2	2871095	2871231	ENSG00000228391.1|AC011995.1|lncRNA|chr2:2871095:2871231:-	0	-
#Deleted in new
chr2	28722439	28723006	ENSG00000226833.5|AC092164.1|lncRNA|chr2:28722439:28723006:-	0	-
#Deleted in new
chr2	28731910	28731983	ENSG00000226833.5|AC092164.1|lncRNA|chr2:28731910:28731983:-	0	-
#Deleted in new
chr2	28778350	28778589	ENSG00000213639.9|PPP1CB|pc|chr2:28778350:28778589:+	0	+
#Partially deleted in new
chr2	28782516	28782863	ENSG00000163806.15|SPDYA|pc|chr2:28782516:28782863:+	0	+
#Partially deleted in new
chr2	28810280	28810706	ENSG00000273233.1|AC097724.1|lncRNA|chr2:28810280:28810706:-	0	-
#Deleted in new
chr2	28861911	28861949	ENSG00000171103.10|TRMT61B|pc|chr2:28861911:28861949:-	0	-
#Deleted in new
chr2	28905005	28905051	ENSG00000163811.11|WDR43|pc|chr2:28905005:28905051:+	0	+
#Deleted in new
chr2	2895047	2896680	ENSG00000234423.1|LINC01250|lncRNA|chr2:2895047:2896680:-	0	-
#Deleted in new
chr2	28956610	28956697	ENSG00000189350.12|TOGARAM2|pc|chr2:28956610:28956697:+	0	+
#Deleted in new
chr2	2897187	2897304	ENSG00000234423.1|LINC01250|lncRNA|chr2:2897187:2897304:-	0	-
#Partially deleted in new
chr2	29118194	29118361	ENSG00000115295.19|CLIP4|pc|chr2:29118194:29118361:+	0	+
#Deleted in new
chr2	29130613	29130887	ENSG00000115295.19|CLIP4|pc|chr2:29130613:29130887:+	0	+
#Deleted in new
chr2	29130670	29130765	ENSG00000115295.19|CLIP4|pc|chr2:29130670:29130765:+	0	+
#Deleted in new
chr2	29175362	29175600	ENSG00000115295.19|CLIP4|pc|chr2:29175362:29175600:+	0	+
#Deleted in new
chr2	29224617	29224678	ENSG00000171094.17|ALK|pc|chr2:29224617:29224678:-	0	-
#Deleted in new
chr2	29224678	29224727	ENSG00000171094.17|ALK|pc|chr2:29224678:29224727:-	0	-
#Deleted in new
chr2	2965813	2965871	ENSG00000234423.1|LINC01250|lncRNA|chr2:2965813:2965871:-	0	-
#Deleted in new
chr2	29890370	29890985	ENSG00000230737.1|AC106870.2|lncRNA|chr2:29890370:29890985:+	0	+
#Deleted in new
chr2	29899596	29899723	ENSG00000197644.2|AC106870.1|lncRNA|chr2:29899596:29899723:+	0	+
#Partially deleted in new
chr2	30111174	30111504	ENSG00000233862.5|AC016907.2|lncRNA|chr2:30111174:30111504:-	0	-
#Deleted in new
chr2	30132344	30132643	ENSG00000233862.5|AC016907.2|lncRNA|chr2:30132344:30132643:-	0	-
#Deleted in new
chr2	301361	301515	ENSG00000228643.1|AC079779.2|lncRNA|chr2:301361:301515:+	0	+
#Deleted in new
chr2	30140639	30140666	ENSG00000233862.5|AC016907.2|lncRNA|chr2:30140639:30140666:-	0	-
#Partially deleted in new
chr2	30140639	30143804	ENSG00000233862.5|AC016907.2|lncRNA|chr2:30140639:30143804:-	0	-
#Deleted in new
chr2	30256538	30256701	ENSG00000213626.11|LBH|pc|chr2:30256538:30256701:+	0	+
#Deleted in new
chr2	30256701	30256803	ENSG00000213626.11|LBH|pc|chr2:30256701:30256803:+	0	+
#Deleted in new
chr2	30323518	30323730	ENSG00000213626.11|LBH|pc|chr2:30323518:30323730:+	0	+
#Deleted in new
chr2	30459551	30459722	ENSG00000172954.13|LCLAT1|pc|chr2:30459551:30459722:+	0	+
#Deleted in new
chr2	30476401	30476635	ENSG00000172954.13|LCLAT1|pc|chr2:30476401:30476635:+	0	+
#Deleted in new
chr2	30476576	30476635	ENSG00000172954.13|LCLAT1|pc|chr2:30476576:30476635:+	0	+
#Deleted in new
chr2	30489159	30489240	ENSG00000172954.13|LCLAT1|pc|chr2:30489159:30489240:+	0	+
#Deleted in new
chr2	30606015	30607845	ENSG00000172954.13|LCLAT1|pc|chr2:30606015:30607845:+	0	+
#Partially deleted in new
chr2	308832	309407	ENSG00000235779.7|AC079779.3|lncRNA|chr2:308832:309407:-	0	-
#Deleted in new
chr2	308899	309183	ENSG00000235779.7|AC079779.3|lncRNA|chr2:308899:309183:-	0	-
#Deleted in new
chr2	308911	309349	ENSG00000235779.7|AC079779.3|lncRNA|chr2:308911:309349:-	0	-
#Deleted in new
chr2	308936	309349	ENSG00000235779.7|AC079779.3|lncRNA|chr2:308936:309349:-	0	-
#Deleted in new
chr2	308936	309407	ENSG00000235779.7|AC079779.3|lncRNA|chr2:308936:309407:-	0	-
#Deleted in new
chr2	308938	309424	ENSG00000277997.1|AC079779.4|lncRNA|chr2:308938:309424:+	0	+
#Deleted in new
chr2	308950	309407	ENSG00000235779.7|AC079779.3|lncRNA|chr2:308950:309407:-	0	-
#Deleted in new
chr2	308971	309349	ENSG00000235779.7|AC079779.3|lncRNA|chr2:308971:309349:-	0	-
#Deleted in new
chr2	308971	309379	ENSG00000235779.7|AC079779.3|lncRNA|chr2:308971:309379:-	0	-
#Deleted in new
chr2	308980	309407	ENSG00000235779.7|AC079779.3|lncRNA|chr2:308980:309407:-	0	-
#Deleted in new
chr2	308986	309407	ENSG00000235779.7|AC079779.3|lncRNA|chr2:308986:309407:-	0	-
#Deleted in new
chr2	309000	309349	ENSG00000235779.7|AC079779.3|lncRNA|chr2:309000:309349:-	0	-
#Deleted in new
chr2	309022	309349	ENSG00000235779.7|AC079779.3|lncRNA|chr2:309022:309349:-	0	-
#Deleted in new
chr2	309030	309349	ENSG00000235779.7|AC079779.3|lncRNA|chr2:309030:309349:-	0	-
#Deleted in new
chr2	309119	309407	ENSG00000235779.7|AC079779.3|lncRNA|chr2:309119:309407:-	0	-
#Deleted in new
chr2	309217	309407	ENSG00000235779.7|AC079779.3|lncRNA|chr2:309217:309407:-	0	-
#Deleted in new
chr2	309220	309407	ENSG00000235779.7|AC079779.3|lncRNA|chr2:309220:309407:-	0	-
#Partially deleted in new
chr2	310214	310499	ENSG00000235779.7|AC079779.3|lncRNA|chr2:310214:310499:-	0	-
#Partially deleted in new
chr2	310295	310499	ENSG00000235779.7|AC079779.3|lncRNA|chr2:310295:310499:-	0	-
#Deleted in new
chr2	31065124	31065407	ENSG00000158089.14|GALNT14|pc|chr2:31065124:31065407:-	0	-
#Deleted in new
chr2	31114742	31114827	ENSG00000158089.14|GALNT14|pc|chr2:31114742:31114827:-	0	-
#Deleted in new
chr2	31132629	31132712	ENSG00000158089.14|GALNT14|pc|chr2:31132629:31132712:-	0	-
#Deleted in new
chr2	311487	311657	ENSG00000235779.7|AC079779.3|lncRNA|chr2:311487:311657:-	0	-
#Deleted in new
chr2	31176586	31176642	ENSG00000214711.9|CAPN14|pc|chr2:31176586:31176642:-	0	-
#Deleted in new
chr2	31186427	31186485	ENSG00000214711.9|CAPN14|pc|chr2:31186427:31186485:-	0	-
#Deleted in new
chr2	31187757	31187814	ENSG00000214711.9|CAPN14|pc|chr2:31187757:31187814:-	0	-
#Deleted in new
chr2	31188317	31188354	ENSG00000214711.9|CAPN14|pc|chr2:31188317:31188354:-	0	-
#Deleted in new
chr2	31189272	31189478	ENSG00000214711.9|CAPN14|pc|chr2:31189272:31189478:-	0	-
#Deleted in new
chr2	31191398	31191407	ENSG00000214711.9|CAPN14|pc|chr2:31191398:31191407:-	0	-
#Partially deleted in new
chr2	31191934	31192098	ENSG00000214711.9|CAPN14|pc|chr2:31191934:31192098:-	0	-
#Deleted in new
chr2	31194408	31194483	ENSG00000214711.9|CAPN14|pc|chr2:31194408:31194483:-	0	-
#Deleted in new
chr2	31199469	31199532	ENSG00000214711.9|CAPN14|pc|chr2:31199469:31199532:-	0	-
#Deleted in new
chr2	31203069	31203139	ENSG00000214711.9|CAPN14|pc|chr2:31203069:31203139:-	0	-
#Deleted in new
chr2	312952	313163	ENSG00000235779.7|AC079779.3|lncRNA|chr2:312952:313163:-	0	-
#Deleted in new
chr2	312956	313157	ENSG00000235779.7|AC079779.3|lncRNA|chr2:312956:313157:-	0	-
#Deleted in new
chr2	3132973	3133105	ENSG00000236760.1|AC019118.2|lncRNA|chr2:3132973:3133105:-	0	-
#Deleted in new
chr2	313873	313884	ENSG00000235779.7|AC079779.3|lncRNA|chr2:313873:313884:-	0	-
#Deleted in new
chr2	313873	313892	ENSG00000235779.7|AC079779.3|lncRNA|chr2:313873:313892:-	0	-
#Deleted in new
chr2	313873	314048	ENSG00000235779.7|AC079779.3|lncRNA|chr2:313873:314048:-	0	-
#Deleted in new
chr2	313873	314049	ENSG00000235779.7|AC079779.3|lncRNA|chr2:313873:314049:-	0	-
#Deleted in new
chr2	313873	314101	ENSG00000235779.7|AC079779.3|lncRNA|chr2:313873:314101:-	0	-
#Deleted in new
chr2	313873	314107	ENSG00000235779.7|AC079779.3|lncRNA|chr2:313873:314107:-	0	-
#Deleted in new
chr2	313873	314110	ENSG00000235779.7|AC079779.3|lncRNA|chr2:313873:314110:-	0	-
#Deleted in new
chr2	313873	314266	ENSG00000235779.7|AC079779.3|lncRNA|chr2:313873:314266:-	0	-
#Deleted in new
chr2	314242	314328	ENSG00000235779.7|AC079779.3|lncRNA|chr2:314242:314328:-	0	-
#Deleted in new
chr2	314242	314337	ENSG00000235779.7|AC079779.3|lncRNA|chr2:314242:314337:-	0	-
#Deleted in new
chr2	314242	314345	ENSG00000235779.7|AC079779.3|lncRNA|chr2:314242:314345:-	0	-
#Deleted in new
chr2	314242	314358	ENSG00000235779.7|AC079779.3|lncRNA|chr2:314242:314358:-	0	-
#Deleted in new
chr2	314242	314360	ENSG00000235779.7|AC079779.3|lncRNA|chr2:314242:314360:-	0	-
#Deleted in new
chr2	314242	314367	ENSG00000235779.7|AC079779.3|lncRNA|chr2:314242:314367:-	0	-
#Deleted in new
chr2	3145546	3145780	ENSG00000236760.1|AC019118.2|lncRNA|chr2:3145546:3145780:-	0	-
#Deleted in new
chr2	31793822	31793915	ENSG00000223647.1|LINC01946|lncRNA|chr2:31793822:31793915:-	0	-
#Deleted in new
chr2	31794097	31794105	ENSG00000223647.1|LINC01946|lncRNA|chr2:31794097:31794105:-	0	-
#Deleted in new
chr2	31802946	31803115	ENSG00000223647.1|LINC01946|lncRNA|chr2:31802946:31803115:-	0	-
#Deleted in new
chr2	31803957	31803980	ENSG00000223647.1|LINC01946|lncRNA|chr2:31803957:31803980:-	0	-
#Deleted in new
chr2	31852975	31853423	ENSG00000273165.1|AL121652.1|lncRNA|chr2:31852975:31853423:-	0	-
#Deleted in new
chr2	31963171	31963298	ENSG00000162959.13|MEMO1|pc|chr2:31963171:31963298:-	0	-
#Partially deleted in new
chr2	32011885	32012052	ENSG00000162961.13|DPY30|pc|chr2:32011885:32012052:-	0	-
#Partially deleted in new
chr2	32011906	32012052	ENSG00000162961.13|DPY30|pc|chr2:32011906:32012052:-	0	-
#Deleted in new
chr2	32013060	32013368	ENSG00000271228.1|AL121655.1|lncRNA|chr2:32013060:32013368:+	0	+
#Deleted in new
chr2	32020939	32021099	ENSG00000162961.13|DPY30|pc|chr2:32020939:32021099:-	0	-
#Deleted in new
chr2	32021019	32021099	ENSG00000162961.13|DPY30|pc|chr2:32021019:32021099:-	0	-
#Deleted in new
chr2	32023421	32023474	ENSG00000162961.13|DPY30|pc|chr2:32023421:32023474:-	0	-
#Deleted in new
chr2	32023676	32023757	ENSG00000162961.13|DPY30|pc|chr2:32023676:32023757:-	0	-
#Deleted in new
chr2	32023676	32023808	ENSG00000162961.13|DPY30|pc|chr2:32023676:32023808:-	0	-
#Deleted in new
chr2	3207803	3208957	ENSG00000032389.12|EIPR1|pc|chr2:3207803:3208957:-	0	-
#Partially deleted in new
chr2	32165045	32165757	ENSG00000272716.1|AL121658.1|lncRNA|chr2:32165045:32165757:-	0	-
#Deleted in new
chr2	32177476	32177596	ENSG00000152683.14|SLC30A6|pc|chr2:32177476:32177596:+	0	+
#Deleted in new
chr2	32187151	32187303	ENSG00000152683.14|SLC30A6|pc|chr2:32187151:32187303:+	0	+
#Partially deleted in new
chr2	32305488	32316594	ENSG00000119820.10|YIPF4|pc|chr2:32305488:32316594:+	0	+
#Deleted in new
chr2	32321637	32323002	ENSG00000272754.1|AL133245.1|lncRNA|chr2:32321637:32323002:+	0	+
#Partially deleted in new
chr2	32378951	32379599	ENSG00000230046.1|BIRC6-AS1|lncRNA|chr2:32378951:32379599:-	0	-
#Deleted in new
chr2	32521926	32523547	ENSG00000276334.1|AL133243.2|lncRNA|chr2:32521926:32523547:+	0	+
#Partially deleted in new
chr2	32526503	32529507	ENSG00000276517.1|AL133243.3|lncRNA|chr2:32526503:32529507:+	0	+
#Deleted in new
chr2	32548674	32549040	ENSG00000274159.1|AL133243.1|lncRNA|chr2:32548674:32549040:+	0	+
#Deleted in new
chr2	32557519	32557872	ENSG00000279897.1|BIRC6-AS2|lncRNA|chr2:32557519:32557872:-	0	-
#Deleted in new
chr2	32563327	32566436	ENSG00000279544.1|AL133243.4|lncRNA|chr2:32563327:32566436:+	0	+
#Deleted in new
chr2	32574582	32574818	ENSG00000279897.1|BIRC6-AS2|lncRNA|chr2:32574582:32574818:-	0	-
#Deleted in new
chr2	3261714	3261827	ENSG00000032389.12|EIPR1|pc|chr2:3261714:3261827:-	0	-
#Deleted in new
chr2	3261916	3262137	ENSG00000032389.12|EIPR1|pc|chr2:3261916:3262137:-	0	-
#Deleted in new
chr2	32704860	32704998	ENSG00000018699.11|TTC27|pc|chr2:32704860:32704998:+	0	+
#Deleted in new
chr2	32766467	32766549	ENSG00000018699.11|TTC27|pc|chr2:32766467:32766549:+	0	+
#Deleted in new
chr2	32780053	32780112	ENSG00000018699.11|TTC27|pc|chr2:32780053:32780112:+	0	+
#Partially deleted in new
chr2	32841012	32841233	ENSG00000230876.6|LINC00486|lncRNA|chr2:32841012:32841233:+	0	+
#Partially deleted in new
chr2	32841013	32841233	ENSG00000230876.6|LINC00486|lncRNA|chr2:32841013:32841233:+	0	+
#Deleted in new
chr2	32896924	32896979	ENSG00000230876.6|LINC00486|lncRNA|chr2:32896924:32896979:+	0	+
#Deleted in new
chr2	32902062	32902123	ENSG00000230876.6|LINC00486|lncRNA|chr2:32902062:32902123:+	0	+
#Deleted in new
chr2	32927126	32927346	ENSG00000236854.1|AL121656.1|lncRNA|chr2:32927126:32927346:+	0	+
#Deleted in new
chr2	3298340	3298446	ENSG00000224885.1|EIPR1-IT1|lncRNA|chr2:3298340:3298446:-	0	-
#Deleted in new
chr2	3318856	3318958	ENSG00000032389.12|EIPR1|pc|chr2:3318856:3318958:-	0	-
#Deleted in new
chr2	3319220	3319468	ENSG00000032389.12|EIPR1|pc|chr2:3319220:3319468:-	0	-
#Deleted in new
chr2	33481182	33481304	ENSG00000152689.17|RASGRP3|pc|chr2:33481182:33481304:+	0	+
#Deleted in new
chr2	33481182	33482014	ENSG00000152689.17|RASGRP3|pc|chr2:33481182:33482014:+	0	+
#Deleted in new
chr2	3353205	3353323	ENSG00000032389.12|EIPR1|pc|chr2:3353205:3353323:-	0	-
#Deleted in new
chr2	33539959	33539989	ENSG00000152689.17|RASGRP3|pc|chr2:33539959:33539989:+	0	+
#Deleted in new
chr2	335772	335954	ENSG00000233684.2|LINC01865|lncRNA|chr2:335772:335954:+	0	+
#Deleted in new
chr2	335772	336465	ENSG00000233684.2|LINC01865|lncRNA|chr2:335772:336465:+	0	+
#Deleted in new
chr2	33706885	33706953	ENSG00000203386.6|LINC01317|lncRNA|chr2:33706885:33706953:+	0	+
#Deleted in new
chr2	33706907	33706953	ENSG00000203386.6|LINC01317|lncRNA|chr2:33706907:33706953:+	0	+
#Deleted in new
chr2	3377322	3377470	ENSG00000032389.12|EIPR1|pc|chr2:3377322:3377470:-	0	-
#Deleted in new
chr2	33855687	33855753	ENSG00000203386.6|LINC01317|lncRNA|chr2:33855687:33855753:+	0	+
#Deleted in new
chr2	33886371	33886474	ENSG00000203386.6|LINC01317|lncRNA|chr2:33886371:33886474:+	0	+
#Deleted in new
chr2	3389685	3389779	ENSG00000171853.15|TRAPPC12|pc|chr2:3389685:3389779:+	0	+
#Deleted in new
chr2	3389693	3389779	ENSG00000171853.15|TRAPPC12|pc|chr2:3389693:3389779:+	0	+
#Deleted in new
chr2	33926839	33926968	ENSG00000203386.6|LINC01317|lncRNA|chr2:33926839:33926968:+	0	+
#Deleted in new
chr2	34067225	34067303	ENSG00000237790.1|LINC01318|lncRNA|chr2:34067225:34067303:+	0	+
#Deleted in new
chr2	341566	342118	ENSG00000233684.2|LINC01865|lncRNA|chr2:341566:342118:+	0	+
#Deleted in new
chr2	34297467	34297753	ENSG00000203386.6|LINC01317|lncRNA|chr2:34297467:34297753:+	0	+
#Partially deleted in new
chr2	3454611	3457229	ENSG00000171853.15|TRAPPC12|pc|chr2:3454611:3457229:+	0	+
#Deleted in new
chr2	3457149	3457229	ENSG00000171853.15|TRAPPC12|pc|chr2:3457149:3457229:+	0	+
#Deleted in new
chr2	3457794	3458181	ENSG00000171853.15|TRAPPC12|pc|chr2:3457794:3458181:+	0	+
#Deleted in new
chr2	3458312	3458461	ENSG00000171853.15|TRAPPC12|pc|chr2:3458312:3458461:+	0	+
#Deleted in new
chr2	3466253	3466393	ENSG00000171853.15|TRAPPC12|pc|chr2:3466253:3466393:+	0	+
#Deleted in new
chr2	3467429	3468006	ENSG00000171853.15|TRAPPC12|pc|chr2:3467429:3468006:+	0	+
#Deleted in new
chr2	34677554	34677927	ENSG00000228262.8|LINC01320|lncRNA|chr2:34677554:34677927:+	0	+
#Deleted in new
chr2	34677578	34677927	ENSG00000228262.8|LINC01320|lncRNA|chr2:34677578:34677927:+	0	+
#Deleted in new
chr2	34677824	34677927	ENSG00000228262.8|LINC01320|lncRNA|chr2:34677824:34677927:+	0	+
#Deleted in new
chr2	34677834	34677927	ENSG00000228262.8|LINC01320|lncRNA|chr2:34677834:34677927:+	0	+
#Deleted in new
chr2	34677842	34677927	ENSG00000228262.8|LINC01320|lncRNA|chr2:34677842:34677927:+	0	+
#Deleted in new
chr2	34677844	34677927	ENSG00000228262.8|LINC01320|lncRNA|chr2:34677844:34677927:+	0	+
#Deleted in new
chr2	34677859	34677927	ENSG00000228262.8|LINC01320|lncRNA|chr2:34677859:34677927:+	0	+
#Deleted in new
chr2	34677862	34677927	ENSG00000228262.8|LINC01320|lncRNA|chr2:34677862:34677927:+	0	+
#Deleted in new
chr2	34677878	34677927	ENSG00000228262.8|LINC01320|lncRNA|chr2:34677878:34677927:+	0	+
#Deleted in new
chr2	34677898	34677927	ENSG00000228262.8|LINC01320|lncRNA|chr2:34677898:34677927:+	0	+
#Deleted in new
chr2	34691590	34691669	ENSG00000228262.8|LINC01320|lncRNA|chr2:34691590:34691669:+	0	+
#Deleted in new
chr2	34692289	34692485	ENSG00000272027.2|AC073218.2|lncRNA|chr2:34692289:34692485:-	0	-
#Deleted in new
chr2	34694199	34694298	ENSG00000272027.2|AC073218.2|lncRNA|chr2:34694199:34694298:-	0	-
#Deleted in new
chr2	34700358	34700678	ENSG00000272027.2|AC073218.2|lncRNA|chr2:34700358:34700678:-	0	-
#Deleted in new
chr2	34700808	34700878	ENSG00000272027.2|AC073218.2|lncRNA|chr2:34700808:34700878:-	0	-
#Deleted in new
chr2	34703379	34703606	ENSG00000272027.2|AC073218.2|lncRNA|chr2:34703379:34703606:-	0	-
#Deleted in new
chr2	34704710	34704922	ENSG00000228262.8|LINC01320|lncRNA|chr2:34704710:34704922:+	0	+
#Deleted in new
chr2	34710451	34710513	ENSG00000228262.8|LINC01320|lncRNA|chr2:34710451:34710513:+	0	+
#Deleted in new
chr2	34721998	34722119	ENSG00000228262.8|LINC01320|lncRNA|chr2:34721998:34722119:+	0	+
#Deleted in new
chr2	34721998	34722121	ENSG00000228262.8|LINC01320|lncRNA|chr2:34721998:34722121:+	0	+
#Deleted in new
chr2	34721998	34722438	ENSG00000228262.8|LINC01320|lncRNA|chr2:34721998:34722438:+	0	+
#Deleted in new
chr2	34721998	34722533	ENSG00000228262.8|LINC01320|lncRNA|chr2:34721998:34722533:+	0	+
#Deleted in new
chr2	34721998	34722547	ENSG00000228262.8|LINC01320|lncRNA|chr2:34721998:34722547:+	0	+
#Deleted in new
chr2	34721998	34722563	ENSG00000228262.8|LINC01320|lncRNA|chr2:34721998:34722563:+	0	+
#Deleted in new
chr2	3472420	3472602	ENSG00000171853.15|TRAPPC12|pc|chr2:3472420:3472602:+	0	+
#Deleted in new
chr2	34732447	34732557	ENSG00000228262.8|LINC01320|lncRNA|chr2:34732447:34732557:+	0	+
#Deleted in new
chr2	34737080	34737118	ENSG00000232153.2|AC073218.1|lncRNA|chr2:34737080:34737118:-	0	-
#Partially deleted in new
chr2	3477694	3478101	ENSG00000171853.15|TRAPPC12|pc|chr2:3477694:3478101:+	0	+
#Deleted in new
chr2	3481241	3481885	ENSG00000225234.1|TRAPPC12-AS1|lncRNA|chr2:3481241:3481885:-	0	-
#Deleted in new
chr2	3482145	3482409	ENSG00000225234.1|TRAPPC12-AS1|lncRNA|chr2:3482145:3482409:-	0	-
#Deleted in new
chr2	34831362	34831492	ENSG00000226994.7|AC012593.1|lncRNA|chr2:34831362:34831492:+	0	+
#Deleted in new
chr2	34831377	34831492	ENSG00000226994.7|AC012593.1|lncRNA|chr2:34831377:34831492:+	0	+
#Deleted in new
chr2	3484719	3485094	ENSG00000171853.15|TRAPPC12|pc|chr2:3484719:3485094:+	0	+
#Deleted in new
chr2	34923500	34923982	ENSG00000226994.7|AC012593.1|lncRNA|chr2:34923500:34923982:+	0	+
#Deleted in new
chr2	34926765	34927011	ENSG00000226994.7|AC012593.1|lncRNA|chr2:34926765:34927011:+	0	+
#Deleted in new
chr2	3496955	3497428	ENSG00000271868.1|AC114810.1|lncRNA|chr2:3496955:3497428:+	0	+
#Deleted in new
chr2	34998272	34998504	ENSG00000237320.2|AC019064.1|lncRNA|chr2:34998272:34998504:-	0	-
#Deleted in new
chr2	34998960	34999022	ENSG00000237320.2|AC019064.1|lncRNA|chr2:34998960:34999022:-	0	-
#Deleted in new
chr2	35037215	35037287	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35037215:35037287:+	0	+
#Partially deleted in new
chr2	3514807	3517747	ENSG00000182551.13|ADI1|pc|chr2:3514807:3517747:-	0	-
#Deleted in new
chr2	35159083	35159155	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35159083:35159155:+	0	+
#Deleted in new
chr2	35159083	35159764	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35159083:35159764:+	0	+
#Deleted in new
chr2	35159146	35159155	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35159146:35159155:+	0	+
#Deleted in new
chr2	35159546	35159628	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35159546:35159628:+	0	+
#Deleted in new
chr2	35159546	35160278	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35159546:35160278:+	0	+
#Deleted in new
chr2	35159598	35159628	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35159598:35159628:+	0	+
#Deleted in new
chr2	35162775	35162821	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35162775:35162821:+	0	+
#Deleted in new
chr2	35162775	35162833	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35162775:35162833:+	0	+
#Deleted in new
chr2	35162775	35162839	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35162775:35162839:+	0	+
#Deleted in new
chr2	35162785	35162839	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35162785:35162839:+	0	+
#Deleted in new
chr2	35162788	35162839	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35162788:35162839:+	0	+
#Deleted in new
chr2	35162802	35162839	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35162802:35162839:+	0	+
#Deleted in new
chr2	35162930	35163059	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35162930:35163059:+	0	+
#Deleted in new
chr2	35162930	35163112	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35162930:35163112:+	0	+
#Partially deleted in new
chr2	35172791	35173124	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35172791:35173124:+	0	+
#Partially deleted in new
chr2	35172791	35173153	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35172791:35173153:+	0	+
#Partially deleted in new
chr2	35172791	35173179	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35172791:35173179:+	0	+
#Deleted in new
chr2	35174528	35174649	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35174528:35174649:+	0	+
#Deleted in new
chr2	35174528	35174806	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35174528:35174806:+	0	+
#Deleted in new
chr2	35174528	35174909	ENSG00000226994.7|AC012593.1|lncRNA|chr2:35174528:35174909:+	0	+
#Partially deleted in new
chr2	3519274	3519956	ENSG00000235078.1|AC231981.1|lncRNA|chr2:3519274:3519956:+	0	+
#Deleted in new
chr2	3531812	3532310	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3531812:3532310:-	0	-
#Deleted in new
chr2	3531983	3532310	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3531983:3532310:-	0	-
#Deleted in new
chr2	3531983	3532310	ENSG00000255767.1|AC108488.2|pc|chr2:3531983:3532310:-	0	-
#Deleted in new
chr2	3531988	3532310	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3531988:3532310:-	0	-
#Deleted in new
chr2	3531989	3532310	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3531989:3532310:-	0	-
#Deleted in new
chr2	3533107	3533190	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3533107:3533190:-	0	-
#Deleted in new
chr2	3533107	3533370	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3533107:3533370:-	0	-
#Deleted in new
chr2	3533223	3533848	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3533223:3533848:-	0	-
#Deleted in new
chr2	3533710	3533782	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3533710:3533782:-	0	-
#Deleted in new
chr2	3534112	3534143	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3534112:3534143:-	0	-
#Deleted in new
chr2	3534112	3534255	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3534112:3534255:-	0	-
#Deleted in new
chr2	3536723	3536869	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3536723:3536869:-	0	-
#Deleted in new
chr2	3536723	3536873	ENSG00000242282.6|AC108488.1|lncRNA|chr2:3536723:3536873:-	0	-
#Partially deleted in new
chr2	3544792	3545871	ENSG00000171865.9|RNASEH1|pc|chr2:3544792:3545871:-	0	-
#Partially deleted in new
chr2	3557674	3557843	ENSG00000171865.9|RNASEH1|pc|chr2:3557674:3557843:-	0	-
#Deleted in new
chr2	3558491	3558998	ENSG00000234171.2|RNASEH1-AS1|lncRNA|chr2:3558491:3558998:+	0	+
#Deleted in new
chr2	3558577	3558998	ENSG00000234171.2|RNASEH1-AS1|lncRNA|chr2:3558577:3558998:+	0	+
#Deleted in new
chr2	3559447	3559729	ENSG00000234171.2|RNASEH1-AS1|lncRNA|chr2:3559447:3559729:+	0	+
#Deleted in new
chr2	3561316	3561731	ENSG00000234171.2|RNASEH1-AS1|lncRNA|chr2:3561316:3561731:+	0	+
#Deleted in new
chr2	3561316	3561745	ENSG00000234171.2|RNASEH1-AS1|lncRNA|chr2:3561316:3561745:+	0	+
#Partially deleted in new
chr2	3575816	3580918	ENSG00000171863.12|RPS7|pc|chr2:3575816:3580918:+	0	+
#Deleted in new
chr2	3603396	3603638	ENSG00000237370.1|AC010907.2|lncRNA|chr2:3603396:3603638:-	0	-
#Deleted in new
chr2	3603552	3603661	ENSG00000118004.17|COLEC11|pc|chr2:3603552:3603661:+	0	+
#Deleted in new
chr2	3605009	3605040	ENSG00000118004.17|COLEC11|pc|chr2:3605009:3605040:+	0	+
#Deleted in new
chr2	3605700	3606243	ENSG00000118004.17|COLEC11|pc|chr2:3605700:3606243:+	0	+
#Deleted in new
chr2	3606051	3606243	ENSG00000118004.17|COLEC11|pc|chr2:3606051:3606243:+	0	+
#Deleted in new
chr2	3626013	3626092	ENSG00000118004.17|COLEC11|pc|chr2:3626013:3626092:+	0	+
#Partially deleted in new
chr2	36378853	36378924	ENSG00000150938.9|CRIM1|pc|chr2:36378853:36378924:+	0	+
#Deleted in new
chr2	3641239	3641432	ENSG00000118004.17|COLEC11|pc|chr2:3641239:3641432:+	0	+
#Partially deleted in new
chr2	36551426	36551491	ENSG00000171055.14|FEZ2|pc|chr2:36551426:36551491:-	0	-
#Deleted in new
chr2	36594413	36594566	ENSG00000171055.14|FEZ2|pc|chr2:36594413:36594566:-	0	-
#Deleted in new
chr2	36646014	36646087	ENSG00000171055.14|FEZ2|pc|chr2:36646014:36646087:-	0	-
#Partially deleted in new
chr2	36839921	36842539	ENSG00000279519.1|AC007382.1|lncRNA|chr2:36839921:36842539:-	0	-
#Partially deleted in new
chr2	3694620	3695872	ENSG00000151360.9|ALLC|pc|chr2:3694620:3695872:+	0	+
#Deleted in new
chr2	3695090	3695265	ENSG00000151360.9|ALLC|pc|chr2:3695090:3695265:+	0	+
#Partially deleted in new
chr2	36968382	36968601	ENSG00000008869.11|HEATR5B|pc|chr2:36968382:36968601:-	0	-
#Split in new
chr2	37096207	37099244	ENSG00000152133.14|GPATCH11|pc|chr2:37096207:37099244:+	0	+
#Partially deleted in new
chr2	37099209	37107395	ENSG00000055332.16|EIF2AK2|pc|chr2:37099209:37107395:-	0	-
#Partially deleted in new
chr2	37105142	37107395	ENSG00000055332.16|EIF2AK2|pc|chr2:37105142:37107395:-	0	-
#Deleted in new
chr2	37135483	37135546	ENSG00000055332.16|EIF2AK2|pc|chr2:37135483:37135546:-	0	-
#Deleted in new
chr2	37189882	37189945	ENSG00000138068.10|SULT6B1|pc|chr2:37189882:37189945:-	0	-
#Deleted in new
chr2	37191156	37191253	ENSG00000138068.10|SULT6B1|pc|chr2:37191156:37191253:-	0	-
#Deleted in new
chr2	37191220	37191253	ENSG00000138068.10|SULT6B1|pc|chr2:37191220:37191253:-	0	-
#Deleted in new
chr2	37196027	37196082	ENSG00000138068.10|SULT6B1|pc|chr2:37196027:37196082:-	0	-
#Deleted in new
chr2	37196487	37196520	ENSG00000218739.9|CEBPZOS|pc|chr2:37196487:37196520:+	0	+
#Deleted in new
chr2	37196493	37196520	ENSG00000218739.9|CEBPZOS|pc|chr2:37196493:37196520:+	0	+
#Deleted in new
chr2	37196504	37196520	ENSG00000218739.9|CEBPZOS|pc|chr2:37196504:37196520:+	0	+
#Deleted in new
chr2	37196507	37196520	ENSG00000218739.9|CEBPZOS|pc|chr2:37196507:37196520:+	0	+
#Deleted in new
chr2	37196515	37196573	ENSG00000138068.10|SULT6B1|pc|chr2:37196515:37196573:-	0	-
#Deleted in new
chr2	37196515	37196598	ENSG00000138068.10|SULT6B1|pc|chr2:37196515:37196598:-	0	-
#Deleted in new
chr2	37196522	37196669	ENSG00000218739.9|CEBPZOS|pc|chr2:37196522:37196669:+	0	+
#Deleted in new
chr2	37197253	37197350	ENSG00000218739.9|CEBPZOS|pc|chr2:37197253:37197350:+	0	+
#Deleted in new
chr2	37198493	37198672	ENSG00000218739.9|CEBPZOS|pc|chr2:37198493:37198672:+	0	+
#Duplicated in new
chr2	37201862	37202692	ENSG00000218739.9|CEBPZOS|pc|chr2:37201862:37202692:+	0	+
#Deleted in new
chr2	37204303	37204739	ENSG00000218739.9|CEBPZOS|pc|chr2:37204303:37204739:+	0	+
#Partially deleted in new
chr2	37213436	37213725	ENSG00000218739.9|CEBPZOS|pc|chr2:37213436:37213725:+	0	+
#Deleted in new
chr2	37213466	37213554	ENSG00000218739.9|CEBPZOS|pc|chr2:37213466:37213554:+	0	+
#Partially deleted in new
chr2	37247312	37247368	ENSG00000003509.15|NDUFAF7|pc|chr2:37247312:37247368:+	0	+
#Deleted in new
chr2	37600135	37600362	ENSG00000236213.1|AC006369.1|lncRNA|chr2:37600135:37600362:+	0	+
#Partially deleted in new
chr2	37684482	37688175	ENSG00000163171.7|CDC42EP3|pc|chr2:37684482:37688175:-	0	-
#Deleted in new
chr2	37688078	37688175	ENSG00000163171.7|CDC42EP3|pc|chr2:37688078:37688175:-	0	-
#Deleted in new
chr2	37738358	37738468	ENSG00000163171.7|CDC42EP3|pc|chr2:37738358:37738468:-	0	-
#Deleted in new
chr2	37828932	37829038	ENSG00000237803.5|LINC00211|lncRNA|chr2:37828932:37829038:-	0	-
#Deleted in new
chr2	37923186	37923367	ENSG00000115841.19|RMDN2|pc|chr2:37923186:37923367:+	0	+
#Deleted in new
chr2	37963091	37963155	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:37963091:37963155:-	0	-
#Deleted in new
chr2	37963091	37963193	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:37963091:37963193:-	0	-
#Deleted in new
chr2	37963095	37963155	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:37963095:37963155:-	0	-
#Deleted in new
chr2	37963095	37963193	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:37963095:37963193:-	0	-
#Partially deleted in new
chr2	37997415	37998363	ENSG00000115841.19|RMDN2|pc|chr2:37997415:37998363:+	0	+
#Deleted in new
chr2	38026978	38027368	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:38026978:38027368:-	0	-
#Deleted in new
chr2	38028086	38028184	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:38028086:38028184:-	0	-
#Deleted in new
chr2	38029345	38029920	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:38029345:38029920:-	0	-
#Deleted in new
chr2	38029808	38029920	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:38029808:38029920:-	0	-
#Deleted in new
chr2	38029823	38029920	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:38029823:38029920:-	0	-
#Deleted in new
chr2	38029854	38029920	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:38029854:38029920:-	0	-
#Deleted in new
chr2	38030224	38030474	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:38030224:38030474:-	0	-
#Deleted in new
chr2	38030318	38030474	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:38030318:38030474:-	0	-
#Deleted in new
chr2	38030424	38030474	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:38030424:38030474:-	0	-
#Deleted in new
chr2	38032868	38033210	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:38032868:38033210:-	0	-
#Deleted in new
chr2	38039312	38039327	ENSG00000235848.4|RMDN2-AS1|lncRNA|chr2:38039312:38039327:-	0	-
#Deleted in new
chr2	38073446	38073490	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38073446:38073490:+	0	+
#Deleted in new
chr2	38082471	38082536	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38082471:38082536:+	0	+
#Deleted in new
chr2	38082697	38082741	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38082697:38082741:+	0	+
#Deleted in new
chr2	38083017	38083150	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38083017:38083150:+	0	+
#Deleted in new
chr2	38083053	38083150	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38083053:38083150:+	0	+
#Deleted in new
chr2	38083072	38083150	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38083072:38083150:+	0	+
#Deleted in new
chr2	38083075	38083150	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38083075:38083150:+	0	+
#Deleted in new
chr2	38083094	38083150	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38083094:38083150:+	0	+
#Deleted in new
chr2	38083172	38084110	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38083172:38084110:+	0	+
#Deleted in new
chr2	38083772	38084110	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38083772:38084110:+	0	+
#Deleted in new
chr2	38083995	38084110	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38083995:38084110:+	0	+
#Deleted in new
chr2	38100923	38101066	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38100923:38101066:+	0	+
#Deleted in new
chr2	38105165	38105617	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38105165:38105617:+	0	+
#Deleted in new
chr2	38108072	38108080	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38108072:38108080:+	0	+
#Deleted in new
chr2	38115440	38115626	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38115440:38115626:+	0	+
#Deleted in new
chr2	38118897	38119025	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38118897:38119025:+	0	+
#Deleted in new
chr2	38130919	38131190	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38130919:38131190:+	0	+
#Deleted in new
chr2	38131088	38131190	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38131088:38131190:+	0	+
#Deleted in new
chr2	38131510	38131561	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38131510:38131561:+	0	+
#Deleted in new
chr2	38131510	38131563	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38131510:38131563:+	0	+
#Deleted in new
chr2	38131510	38131565	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38131510:38131565:+	0	+
#Deleted in new
chr2	38131510	38131567	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38131510:38131567:+	0	+
#Deleted in new
chr2	38131510	38131576	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38131510:38131576:+	0	+
#Deleted in new
chr2	38131510	38131587	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38131510:38131587:+	0	+
#Deleted in new
chr2	38131510	38131588	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38131510:38131588:+	0	+
#Deleted in new
chr2	38131510	38131590	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38131510:38131590:+	0	+
#Deleted in new
chr2	38131510	38131614	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38131510:38131614:+	0	+
#Deleted in new
chr2	38132636	38132720	ENSG00000229160.1|AC009229.2|lncRNA|chr2:38132636:38132720:-	0	-
#Partially deleted in new
chr2	38138494	38138599	ENSG00000229160.1|AC009229.2|lncRNA|chr2:38138494:38138599:-	0	-
#Deleted in new
chr2	38147816	38147966	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38147816:38147966:+	0	+
#Deleted in new
chr2	38151351	38151380	ENSG00000232973.11|CYP1B1-AS1|lncRNA|chr2:38151351:38151380:+	0	+
#Deleted in new
chr2	38354066	38354177	ENSG00000119787.13|ATL2|pc|chr2:38354066:38354177:-	0	-
#Partially deleted in new
chr2	38358442	38358688	ENSG00000119787.13|ATL2|pc|chr2:38358442:38358688:-	0	-
#Deleted in new
chr2	38431293	38431438	ENSG00000235009.1|LINC01883|lncRNA|chr2:38431293:38431438:+	0	+
#Deleted in new
chr2	38458636	38458875	ENSG00000231367.5|AC011247.1|lncRNA|chr2:38458636:38458875:-	0	-
#Deleted in new
chr2	38458642	38458875	ENSG00000231367.5|AC011247.1|lncRNA|chr2:38458642:38458875:-	0	-
#Deleted in new
chr2	38458645	38458875	ENSG00000231367.5|AC011247.1|lncRNA|chr2:38458645:38458875:-	0	-
#Deleted in new
chr2	38469243	38469441	ENSG00000231367.5|AC011247.1|lncRNA|chr2:38469243:38469441:-	0	-
#Deleted in new
chr2	3847153	3847404	ENSG00000214866.8|DCDC2C|pc|chr2:3847153:3847404:+	0	+
#Deleted in new
chr2	3847153	3847411	ENSG00000214866.8|DCDC2C|pc|chr2:3847153:3847411:+	0	+
#Deleted in new
chr2	38482958	38483093	ENSG00000231367.5|AC011247.1|lncRNA|chr2:38482958:38483093:-	0	-
#Deleted in new
chr2	38482958	38483156	ENSG00000231367.5|AC011247.1|lncRNA|chr2:38482958:38483156:-	0	-
#Deleted in new
chr2	38515446	38515740	ENSG00000231367.5|AC011247.1|lncRNA|chr2:38515446:38515740:-	0	-
#Deleted in new
chr2	38668201	38668761	ENSG00000232518.3|AC074366.1|lncRNA|chr2:38668201:38668761:-	0	-
#Deleted in new
chr2	38668223	38668761	ENSG00000232518.3|AC074366.1|lncRNA|chr2:38668223:38668761:-	0	-
#Deleted in new
chr2	38668566	38668761	ENSG00000232518.3|AC074366.1|lncRNA|chr2:38668566:38668761:-	0	-
#Deleted in new
chr2	38668687	38668761	ENSG00000232518.3|AC074366.1|lncRNA|chr2:38668687:38668761:-	0	-
#Deleted in new
chr2	38669338	38669528	ENSG00000232518.3|AC074366.1|lncRNA|chr2:38669338:38669528:-	0	-
#Partially deleted in new
chr2	38669338	38669538	ENSG00000232518.3|AC074366.1|lncRNA|chr2:38669338:38669538:-	0	-
#Deleted in new
chr2	38669449	38669528	ENSG00000232518.3|AC074366.1|lncRNA|chr2:38669449:38669528:-	0	-
#Deleted in new
chr2	38671353	38671421	ENSG00000232518.3|AC074366.1|lncRNA|chr2:38671353:38671421:-	0	-
#Deleted in new
chr2	38680059	38680161	ENSG00000143891.16|GALM|pc|chr2:38680059:38680161:+	0	+
#Deleted in new
chr2	38747061	38747130	ENSG00000115875.18|SRSF7|pc|chr2:38747061:38747130:-	0	-
#Deleted in new
chr2	38768104	38768199	ENSG00000152147.10|GEMIN6|pc|chr2:38768104:38768199:+	0	+
#Partially deleted in new
chr2	38779257	38779441	ENSG00000152147.10|GEMIN6|pc|chr2:38779257:38779441:+	0	+
#Deleted in new
chr2	38815874	38816185	ENSG00000163214.20|DHX57|pc|chr2:38815874:38816185:-	0	-
#Deleted in new
chr2	388411	388597	ENSG00000236856.1|AC105393.2|lncRNA|chr2:388411:388597:+	0	+
#Deleted in new
chr2	38867108	38867230	ENSG00000163214.20|DHX57|pc|chr2:38867108:38867230:-	0	-
#Deleted in new
chr2	38867108	38867238	ENSG00000163214.20|DHX57|pc|chr2:38867108:38867238:-	0	-
#Deleted in new
chr2	38992975	38993066	ENSG00000229692.3|SOS1-IT1|lncRNA|chr2:38992975:38993066:-	0	-
#Partially deleted in new
chr2	39437430	39437535	ENSG00000231312.6|AC007388.1|lncRNA|chr2:39437430:39437535:+	0	+
#Partially deleted in new
chr2	39453838	39453931	ENSG00000231312.6|AC007388.1|lncRNA|chr2:39453838:39453931:+	0	+
#Deleted in new
chr2	39474526	39474758	ENSG00000231312.6|AC007388.1|lncRNA|chr2:39474526:39474758:+	0	+
#Deleted in new
chr2	39587015	39587034	ENSG00000231312.6|AC007388.1|lncRNA|chr2:39587015:39587034:+	0	+
#Deleted in new
chr2	39599365	39599477	ENSG00000231312.6|AC007388.1|lncRNA|chr2:39599365:39599477:+	0	+
#Deleted in new
chr2	39599365	39599539	ENSG00000231312.6|AC007388.1|lncRNA|chr2:39599365:39599539:+	0	+
#Deleted in new
chr2	39599365	39601344	ENSG00000231312.6|AC007388.1|lncRNA|chr2:39599365:39601344:+	0	+
#Deleted in new
chr2	39603311	39604076	ENSG00000231312.6|AC007388.1|lncRNA|chr2:39603311:39604076:+	0	+
#Deleted in new
chr2	3961769	3961803	ENSG00000237401.6|LINC01304|lncRNA|chr2:3961769:3961803:-	0	-
#Deleted in new
chr2	3961769	3961894	ENSG00000237401.6|LINC01304|lncRNA|chr2:3961769:3961894:-	0	-
#Deleted in new
chr2	3968178	3968288	ENSG00000237401.6|LINC01304|lncRNA|chr2:3968178:3968288:-	0	-
#Deleted in new
chr2	3972844	3973074	ENSG00000237401.6|LINC01304|lncRNA|chr2:3972844:3973074:-	0	-
#Deleted in new
chr2	3972845	3973102	ENSG00000237401.6|LINC01304|lncRNA|chr2:3972845:3973102:-	0	-
#Deleted in new
chr2	3973544	3973678	ENSG00000237401.6|LINC01304|lncRNA|chr2:3973544:3973678:-	0	-
#Deleted in new
chr2	3973544	3973695	ENSG00000237401.6|LINC01304|lncRNA|chr2:3973544:3973695:-	0	-
#Deleted in new
chr2	3973544	3974019	ENSG00000237401.6|LINC01304|lncRNA|chr2:3973544:3974019:-	0	-
#Deleted in new
chr2	3973544	3974027	ENSG00000237401.6|LINC01304|lncRNA|chr2:3973544:3974027:-	0	-
#Deleted in new
chr2	3973544	3974036	ENSG00000237401.6|LINC01304|lncRNA|chr2:3973544:3974036:-	0	-
#Deleted in new
chr2	3973544	3974070	ENSG00000237401.6|LINC01304|lncRNA|chr2:3973544:3974070:-	0	-
#Deleted in new
chr2	39757247	39757368	ENSG00000138050.14|THUMPD2|pc|chr2:39757247:39757368:-	0	-
#Deleted in new
chr2	39786452	39786525	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:39786452:39786525:+	0	+
#Deleted in new
chr2	39849956	39850086	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:39849956:39850086:+	0	+
#Deleted in new
chr2	39851306	39851504	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:39851306:39851504:+	0	+
#Deleted in new
chr2	39855999	39856056	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:39855999:39856056:+	0	+
#Deleted in new
chr2	39917559	39917659	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:39917559:39917659:+	0	+
#Deleted in new
chr2	39917562	39917659	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:39917562:39917659:+	0	+
#Deleted in new
chr2	39917613	39917659	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:39917613:39917659:+	0	+
#Deleted in new
chr2	39917828	39917882	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:39917828:39917882:+	0	+
#Deleted in new
chr2	39917840	39917882	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:39917840:39917882:+	0	+
#Deleted in new
chr2	39917844	39917882	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:39917844:39917882:+	0	+
#Deleted in new
chr2	39919692	39919783	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:39919692:39919783:+	0	+
#Deleted in new
chr2	40042349	40042473	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40042349:40042473:+	0	+
#Deleted in new
chr2	40066089	40066624	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40066089:40066624:+	0	+
#Deleted in new
chr2	40066489	40066624	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40066489:40066624:+	0	+
#Deleted in new
chr2	40072752	40073000	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40072752:40073000:+	0	+
#Deleted in new
chr2	40086961	40087013	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40086961:40087013:+	0	+
#Deleted in new
chr2	40086963	40087013	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40086963:40087013:+	0	+
#Deleted in new
chr2	40086974	40087013	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40086974:40087013:+	0	+
#Deleted in new
chr2	40104908	40104962	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40104908:40104962:+	0	+
#Deleted in new
chr2	40104908	40105321	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40104908:40105321:+	0	+
#Partially deleted in new
chr2	40105160	40105422	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40105160:40105422:+	0	+
#Deleted in new
chr2	40116822	40117035	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40116822:40117035:+	0	+
#Partially deleted in new
chr2	40123145	40123274	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40123145:40123274:+	0	+
#Deleted in new
chr2	40208374	40208451	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40208374:40208451:+	0	+
#Deleted in new
chr2	40209025	40209217	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40209025:40209217:+	0	+
#Deleted in new
chr2	40209964	40210024	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40209964:40210024:+	0	+
#Deleted in new
chr2	40209966	40210024	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40209966:40210024:+	0	+
#Deleted in new
chr2	40250298	40250509	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40250298:40250509:+	0	+
#Partially deleted in new
chr2	40254419	40254546	ENSG00000227028.6|SLC8A1-AS1|lncRNA|chr2:40254419:40254546:+	0	+
#Deleted in new
chr2	40610929	40611053	ENSG00000183023.18|SLC8A1|pc|chr2:40610929:40611053:-	0	-
#Deleted in new
chr2	40746486	40746652	ENSG00000233128.1|LINC01794|lncRNA|chr2:40746486:40746652:+	0	+
#Deleted in new
chr2	4136643	4137004	ENSG00000229550.1|AC012445.1|lncRNA|chr2:4136643:4137004:-	0	-
#Deleted in new
chr2	4137120	4137262	ENSG00000229550.1|AC012445.1|lncRNA|chr2:4137120:4137262:-	0	-
#Deleted in new
chr2	421056	421161	ENSG00000226277.1|AC105393.1|lncRNA|chr2:421056:421161:+	0	+
#Deleted in new
chr2	42149934	42150032	ENSG00000224875.2|AC083949.1|lncRNA|chr2:42149934:42150032:-	0	-
#Deleted in new
chr2	42207928	42208082	ENSG00000143924.18|EML4|pc|chr2:42207928:42208082:+	0	+
#Deleted in new
chr2	42333545	42333869	ENSG00000115944.14|COX7A2L|pc|chr2:42333545:42333869:-	0	-
#Deleted in new
chr2	42388444	42388507	ENSG00000115944.14|COX7A2L|pc|chr2:42388444:42388507:-	0	-
#Deleted in new
chr2	42388448	42388656	ENSG00000115944.14|COX7A2L|pc|chr2:42388448:42388656:-	0	-
#Deleted in new
chr2	42413698	42413760	ENSG00000115944.14|COX7A2L|pc|chr2:42413698:42413760:-	0	-
#Deleted in new
chr2	42415482	42415550	ENSG00000115944.14|COX7A2L|pc|chr2:42415482:42415550:-	0	-
#Deleted in new
chr2	42581784	42581908	ENSG00000057935.13|MTA3|pc|chr2:42581784:42581908:+	0	+
#Deleted in new
chr2	42698414	42698494	ENSG00000057935.13|MTA3|pc|chr2:42698414:42698494:+	0	+
#Partially deleted in new
chr2	42702306	42704318	ENSG00000057935.13|MTA3|pc|chr2:42702306:42704318:+	0	+
#Deleted in new
chr2	42808	42952	ENSG00000184731.5|FAM110C|pc|chr2:42808:42952:-	0	-
#Deleted in new
chr2	43003882	43003932	ENSG00000224739.2|AC016735.1|lncRNA|chr2:43003882:43003932:-	0	-
#Deleted in new
chr2	43005999	43006060	ENSG00000224739.2|AC016735.1|lncRNA|chr2:43005999:43006060:-	0	-
#Deleted in new
chr2	43031134	43031301	ENSG00000231826.5|LINC01819|lncRNA|chr2:43031134:43031301:-	0	-
#Deleted in new
chr2	43035054	43035152	ENSG00000231826.5|LINC01819|lncRNA|chr2:43035054:43035152:-	0	-
#Deleted in new
chr2	43036695	43036765	ENSG00000231826.5|LINC01819|lncRNA|chr2:43036695:43036765:-	0	-
#Deleted in new
chr2	43097745	43098040	ENSG00000230587.1|AC093609.1|lncRNA|chr2:43097745:43098040:-	0	-
#Deleted in new
chr2	43277226	43277301	ENSG00000115970.18|THADA|pc|chr2:43277226:43277301:-	0	-
#Partially deleted in new
chr2	43562217	43566821	ENSG00000115970.18|THADA|pc|chr2:43562217:43566821:-	0	-
#Deleted in new
chr2	43592843	43592890	ENSG00000115970.18|THADA|pc|chr2:43592843:43592890:-	0	-
#Deleted in new
chr2	43658665	43658867	ENSG00000152527.13|PLEKHH2|pc|chr2:43658665:43658867:+	0	+
#Deleted in new
chr2	43775708	43775788	ENSG00000138036.18|DYNC2LI1|pc|chr2:43775708:43775788:+	0	+
#Deleted in new
chr2	43781627	43781764	ENSG00000138036.18|DYNC2LI1|pc|chr2:43781627:43781764:+	0	+
#Partially deleted in new
chr2	43886507	43888656	ENSG00000138095.18|LRPPRC|pc|chr2:43886507:43888656:-	0	-
#Deleted in new
chr2	43890222	43890362	ENSG00000138095.18|LRPPRC|pc|chr2:43890222:43890362:-	0	-
#Partially deleted in new
chr2	43896236	43896708	ENSG00000138095.18|LRPPRC|pc|chr2:43896236:43896708:-	0	-
#Deleted in new
chr2	44213695	44213757	ENSG00000138032.20|PPM1B|pc|chr2:44213695:44213757:+	0	+
#Partially deleted in new
chr2	44313834	44315243	ENSG00000138079.13|SLC3A1|pc|chr2:44313834:44315243:+	0	+
#Deleted in new
chr2	44316280	44316444	ENSG00000138078.15|PREPL|pc|chr2:44316280:44316444:-	0	-
#Deleted in new
chr2	44317609	44318389	ENSG00000138078.15|PREPL|pc|chr2:44317609:44318389:-	0	-
#Deleted in new
chr2	44318117	44318155	ENSG00000138079.13|SLC3A1|pc|chr2:44318117:44318155:+	0	+
#Partially deleted in new
chr2	44318117	44318762	ENSG00000138079.13|SLC3A1|pc|chr2:44318117:44318762:+	0	+
#Deleted in new
chr2	44347209	44347323	ENSG00000138078.15|PREPL|pc|chr2:44347209:44347323:-	0	-
#Deleted in new
chr2	44369710	44370007	ENSG00000143919.14|CAMKMT|pc|chr2:44369710:44370007:+	0	+
#Deleted in new
chr2	44456567	44457261	ENSG00000143919.14|CAMKMT|pc|chr2:44456567:44457261:+	0	+
#Deleted in new
chr2	44549554	44549728	ENSG00000143919.14|CAMKMT|pc|chr2:44549554:44549728:+	0	+
#Deleted in new
chr2	44549554	44549785	ENSG00000143919.14|CAMKMT|pc|chr2:44549554:44549785:+	0	+
#Deleted in new
chr2	44631490	44631714	ENSG00000143919.14|CAMKMT|pc|chr2:44631490:44631714:+	0	+
#Deleted in new
chr2	44921076	44921216	ENSG00000259439.2|LINC01833|lncRNA|chr2:44921076:44921216:-	0	-
#Deleted in new
chr2	44961061	44961248	ENSG00000225156.2|AC012354.1|lncRNA|chr2:44961061:44961248:+	0	+
#Partially deleted in new
chr2	44966417	44968762	ENSG00000225156.2|AC012354.1|lncRNA|chr2:44966417:44968762:+	0	+
#Partially deleted in new
chr2	45174339	45174587	ENSG00000205054.6|LINC01121|lncRNA|chr2:45174339:45174587:-	0	-
#Partially deleted in new
chr2	45174343	45174587	ENSG00000205054.6|LINC01121|lncRNA|chr2:45174343:45174587:-	0	-
#Partially deleted in new
chr2	45187169	45189249	ENSG00000205054.6|LINC01121|lncRNA|chr2:45187169:45189249:-	0	-
#Partially deleted in new
chr2	45447149	45448095	ENSG00000068784.12|SRBD1|pc|chr2:45447149:45448095:-	0	-
#Deleted in new
chr2	45612069	45612165	ENSG00000068784.12|SRBD1|pc|chr2:45612069:45612165:-	0	-
#Deleted in new
chr2	45686291	45686347	ENSG00000171132.13|PRKCE|pc|chr2:45686291:45686347:+	0	+
#Deleted in new
chr2	45851687	45852026	ENSG00000171132.13|PRKCE|pc|chr2:45851687:45852026:+	0	+
#Deleted in new
chr2	46000901	46001002	ENSG00000171132.13|PRKCE|pc|chr2:46000901:46001002:+	0	+
#Partially deleted in new
chr2	46078014	46078369	ENSG00000232696.1|AC017006.2|lncRNA|chr2:46078014:46078369:-	0	-
#Deleted in new
chr2	46078719	46078828	ENSG00000232696.1|AC017006.2|lncRNA|chr2:46078719:46078828:-	0	-
#Partially deleted in new
chr2	46166788	46166963	ENSG00000231336.1|AC017006.1|lncRNA|chr2:46166788:46166963:-	0	-
#Partially deleted in new
chr2	46167789	46167978	ENSG00000231336.1|AC017006.1|lncRNA|chr2:46167789:46167978:-	0	-
#Deleted in new
chr2	4630199	4630390	ENSG00000231532.5|LINC01249|lncRNA|chr2:4630199:4630390:-	0	-
#Deleted in new
chr2	4634893	4635059	ENSG00000231532.5|LINC01249|lncRNA|chr2:4634893:4635059:-	0	-
#Deleted in new
chr2	46394017	46394167	ENSG00000228100.1|LINC01820|lncRNA|chr2:46394017:46394167:-	0	-
#Deleted in new
chr2	4642919	4643355	ENSG00000231532.5|LINC01249|lncRNA|chr2:4642919:4643355:-	0	-
#Deleted in new
chr2	46500935	46501278	ENSG00000253515.1|AC018682.2|lncRNA|chr2:46500935:46501278:+	0	+
#Deleted in new
chr2	4651312	4651529	ENSG00000231532.5|LINC01249|lncRNA|chr2:4651312:4651529:-	0	-
#Deleted in new
chr2	46527877	46528047	ENSG00000250565.6|ATP6V1E2|pc|chr2:46527877:46528047:-	0	-
#Deleted in new
chr2	46537375	46537576	ENSG00000250565.6|ATP6V1E2|pc|chr2:46537375:46537576:-	0	-
#Deleted in new
chr2	4656165	4656203	ENSG00000231532.5|LINC01249|lncRNA|chr2:4656165:4656203:-	0	-
#Deleted in new
chr2	4656165	4656215	ENSG00000231532.5|LINC01249|lncRNA|chr2:4656165:4656215:-	0	-
#Deleted in new
chr2	46580034	46580238	ENSG00000250116.2|AC018682.1|lncRNA|chr2:46580034:46580238:-	0	-
#Partially deleted in new
chr2	46591802	46591925	ENSG00000151665.12|PIGF|pc|chr2:46591802:46591925:-	0	-
#Deleted in new
chr2	46817247	46817433	ENSG00000222005.8|LINC01118|lncRNA|chr2:46817247:46817433:+	0	+
#Deleted in new
chr2	46817369	46817433	ENSG00000222005.8|LINC01118|lncRNA|chr2:46817369:46817433:+	0	+
#Deleted in new
chr2	46827863	46828084	ENSG00000239332.5|LINC01119|lncRNA|chr2:46827863:46828084:+	0	+
#Deleted in new
chr2	46852019	46852568	ENSG00000226548.1|AC016722.1|lncRNA|chr2:46852019:46852568:-	0	-
#Deleted in new
chr2	46853393	46853496	ENSG00000226548.1|AC016722.1|lncRNA|chr2:46853393:46853496:-	0	-
#Deleted in new
chr2	46855687	46855990	ENSG00000239332.5|LINC01119|lncRNA|chr2:46855687:46855990:+	0	+
#Deleted in new
chr2	46855922	46855990	ENSG00000239332.5|LINC01119|lncRNA|chr2:46855922:46855990:+	0	+
#Deleted in new
chr2	46899274	46899314	ENSG00000228925.1|AC016722.2|lncRNA|chr2:46899274:46899314:+	0	+
#Partially deleted in new
chr2	46906883	46908678	ENSG00000228925.1|AC016722.2|lncRNA|chr2:46906883:46908678:+	0	+
#Deleted in new
chr2	46910779	46910873	ENSG00000180398.11|MCFD2|pc|chr2:46910779:46910873:-	0	-
#Partially deleted in new
chr2	46912542	46912658	ENSG00000180398.11|MCFD2|pc|chr2:46912542:46912658:-	0	-
#Deleted in new
chr2	46917183	46917277	ENSG00000068724.15|TTC7A|pc|chr2:46917183:46917277:+	0	+
#Deleted in new
chr2	46951601	46951733	ENSG00000068724.15|TTC7A|pc|chr2:46951601:46951733:+	0	+
#Deleted in new
chr2	46978117	46978249	ENSG00000068724.15|TTC7A|pc|chr2:46978117:46978249:+	0	+
#Deleted in new
chr2	47040367	47040524	ENSG00000233845.1|AC093732.1|lncRNA|chr2:47040367:47040524:-	0	-
#Deleted in new
chr2	47045537	47045584	ENSG00000239605.9|STPG4|pc|chr2:47045537:47045584:-	0	-
#Deleted in new
chr2	47065756	47066137	ENSG00000239605.9|STPG4|pc|chr2:47065756:47066137:-	0	-
#Deleted in new
chr2	47065940	47066137	ENSG00000273269.2|STPG4|pc|chr2:47065940:47066137:-	0	-
#Deleted in new
chr2	47108387	47108785	ENSG00000239605.9|STPG4|pc|chr2:47108387:47108785:-	0	-
#Deleted in new
chr2	47108387	47108788	ENSG00000239605.9|STPG4|pc|chr2:47108387:47108788:-	0	-
#Deleted in new
chr2	47108387	47108802	ENSG00000239605.9|STPG4|pc|chr2:47108387:47108802:-	0	-
#Deleted in new
chr2	47121012	47121153	ENSG00000273269.2|STPG4|pc|chr2:47121012:47121153:-	0	-
#Partially deleted in new
chr2	47128874	47129995	ENSG00000239605.9|STPG4|pc|chr2:47128874:47129995:-	0	-
#Partially deleted in new
chr2	47162518	47163963	ENSG00000143933.16|CALM2|pc|chr2:47162518:47163963:-	0	-
#Deleted in new
chr2	47167475	47167690	ENSG00000143933.16|CALM2|pc|chr2:47167475:47167690:-	0	-
#Deleted in new
chr2	47172413	47172459	ENSG00000143933.16|CALM2|pc|chr2:47172413:47172459:-	0	-
#Deleted in new
chr2	47220808	47221323	ENSG00000234690.6|AC106869.1|lncRNA|chr2:47220808:47221323:-	0	-
#Deleted in new
chr2	47323420	47323495	ENSG00000234690.6|AC106869.1|lncRNA|chr2:47323420:47323495:-	0	-
#Deleted in new
chr2	47331379	47332107	ENSG00000234690.6|AC106869.1|lncRNA|chr2:47331379:47332107:-	0	-
#Deleted in new
chr2	47332272	47332408	ENSG00000234690.6|AC106869.1|lncRNA|chr2:47332272:47332408:-	0	-
#Deleted in new
chr2	47332933	47333026	ENSG00000234690.6|AC106869.1|lncRNA|chr2:47332933:47333026:-	0	-
#Partially deleted in new
chr2	47368927	47369235	ENSG00000119888.10|EPCAM|pc|chr2:47368927:47369235:+	0	+
#Deleted in new
chr2	47387557	47387601	ENSG00000119888.10|EPCAM|pc|chr2:47387557:47387601:+	0	+
#Deleted in new
chr2	47555858	47555948	ENSG00000095002.13|MSH2|pc|chr2:47555858:47555948:+	0	+
#Deleted in new
chr2	47695529	47696097	ENSG00000116062.14|MSH6|pc|chr2:47695529:47696097:+	0	+
#Deleted in new
chr2	47695815	47696097	ENSG00000116062.14|MSH6|pc|chr2:47695815:47696097:+	0	+
#Deleted in new
chr2	47695818	47696097	ENSG00000116062.14|MSH6|pc|chr2:47695818:47696097:+	0	+
#Partially deleted in new
chr2	47708182	47709833	ENSG00000116062.14|MSH6|pc|chr2:47708182:47709833:+	0	+
#Deleted in new
chr2	47737390	47737506	ENSG00000116062.14|MSH6|pc|chr2:47737390:47737506:+	0	+
#Deleted in new
chr2	47783954	47784105	ENSG00000116062.14|MSH6|pc|chr2:47783954:47784105:+	0	+
#Deleted in new
chr2	47784180	47784238	ENSG00000116062.14|MSH6|pc|chr2:47784180:47784238:+	0	+
#Deleted in new
chr2	47784487	47784976	ENSG00000116062.14|MSH6|pc|chr2:47784487:47784976:+	0	+
#Deleted in new
chr2	47789315	47789440	ENSG00000138081.20|FBXO11|pc|chr2:47789315:47789440:-	0	-
#Deleted in new
chr2	47789321	47789440	ENSG00000138081.20|FBXO11|pc|chr2:47789321:47789440:-	0	-
#Partially deleted in new
chr2	47810315	47811661	ENSG00000138081.20|FBXO11|pc|chr2:47810315:47811661:-	0	-
#Partially deleted in new
chr2	47813790	47814298	ENSG00000138081.20|FBXO11|pc|chr2:47813790:47814298:-	0	-
#Deleted in new
chr2	47888625	47888719	ENSG00000138081.20|FBXO11|pc|chr2:47888625:47888719:-	0	-
#Partially deleted in new
chr2	47943530	47943612	ENSG00000230773.6|AC092650.1|lncRNA|chr2:47943530:47943612:-	0	-
#Deleted in new
chr2	47945151	47945287	ENSG00000230773.6|AC092650.1|lncRNA|chr2:47945151:47945287:-	0	-
#Deleted in new
chr2	47945255	47945287	ENSG00000230773.6|AC092650.1|lncRNA|chr2:47945255:47945287:-	0	-
#Deleted in new
chr2	47948383	47948409	ENSG00000230773.6|AC092650.1|lncRNA|chr2:47948383:47948409:-	0	-
#Deleted in new
chr2	47950227	47950461	ENSG00000230773.6|AC092650.1|lncRNA|chr2:47950227:47950461:-	0	-
#Deleted in new
chr2	47962432	47962576	ENSG00000230773.6|AC092650.1|lncRNA|chr2:47962432:47962576:-	0	-
#Deleted in new
chr2	48003299	48003425	ENSG00000230773.6|AC092650.1|lncRNA|chr2:48003299:48003425:-	0	-
#Deleted in new
chr2	48004821	48004950	ENSG00000230773.6|AC092650.1|lncRNA|chr2:48004821:48004950:-	0	-
#Deleted in new
chr2	48022336	48022403	ENSG00000230773.6|AC092650.1|lncRNA|chr2:48022336:48022403:-	0	-
#Deleted in new
chr2	48109535	48109678	ENSG00000230773.6|AC092650.1|lncRNA|chr2:48109535:48109678:-	0	-
#Deleted in new
chr2	48164887	48164934	ENSG00000230773.6|AC092650.1|lncRNA|chr2:48164887:48164934:-	0	-
#Deleted in new
chr2	48180321	48180458	ENSG00000230773.6|AC092650.1|lncRNA|chr2:48180321:48180458:-	0	-
#Deleted in new
chr2	48240927	48240983	ENSG00000230773.6|AC092650.1|lncRNA|chr2:48240927:48240983:-	0	-
#Deleted in new
chr2	48328560	48328702	ENSG00000170802.15|FOXN2|pc|chr2:48328560:48328702:+	0	+
#Deleted in new
chr2	48479483	48479556	ENSG00000162869.15|PPP1R21|pc|chr2:48479483:48479556:+	0	+
#Deleted in new
chr2	48529382	48529587	ENSG00000243244.5|STON1|pc|chr2:48529382:48529587:+	0	+
#Deleted in new
chr2	48618023	48618115	ENSG00000242441.7|GTF2A1L|pc|chr2:48618023:48618115:+	0	+
#Duplicated in new
chr2	48632290	48633121	ENSG00000279956.1|AC073082.1|pc|chr2:48632290:48633121:-	0	-
#Deleted in new
chr2	48668569	48668665	ENSG00000279956.1|AC073082.1|pc|chr2:48668569:48668665:-	0	-
#Partially deleted in new
chr2	48720039	48721779	ENSG00000138039.14|LHCGR|pc|chr2:48720039:48721779:-	0	-
#Deleted in new
chr2	48776279	48776481	ENSG00000068781.21|STON1-GTF2A1L|pc|chr2:48776279:48776481:+	0	+
#Deleted in new
chr2	48776279	48776517	ENSG00000068781.21|STON1-GTF2A1L|pc|chr2:48776279:48776517:+	0	+
#Deleted in new
chr2	48809339	48809641	ENSG00000282890.1|AC009975.1|lncRNA|chr2:48809339:48809641:+	0	+
#Deleted in new
chr2	490943	491318	ENSG00000223985.1|LINC01874|lncRNA|chr2:490943:491318:-	0	-
#Deleted in new
chr2	49202125	49202687	ENSG00000282998.1|AC009975.2|lncRNA|chr2:49202125:49202687:-	0	-
#Deleted in new
chr2	49216014	49216247	ENSG00000282998.1|AC009975.2|lncRNA|chr2:49216014:49216247:-	0	-
#Deleted in new
chr2	492520	492655	ENSG00000223985.1|LINC01874|lncRNA|chr2:492520:492655:-	0	-
#Deleted in new
chr2	49331873	49331980	ENSG00000282998.1|AC009975.2|lncRNA|chr2:49331873:49331980:-	0	-
#Deleted in new
chr2	49413050	49413143	ENSG00000282890.1|AC009975.1|lncRNA|chr2:49413050:49413143:+	0	+
#Split in new
chr2	49417644	49419013	ENSG00000282890.1|AC009975.1|lncRNA|chr2:49417644:49419013:+	0	+
#Deleted in new
chr2	49451676	49451896	ENSG00000282998.1|AC009975.2|lncRNA|chr2:49451676:49451896:-	0	-
#Deleted in new
chr2	495730	495938	ENSG00000284452.1|AC093326.2|lncRNA|chr2:495730:495938:+	0	+
#Deleted in new
chr2	49592987	49593089	ENSG00000282828.1|AC009971.1|lncRNA|chr2:49592987:49593089:+	0	+
#Deleted in new
chr2	49594623	49595122	ENSG00000282828.1|AC009971.1|lncRNA|chr2:49594623:49595122:+	0	+
#Deleted in new
chr2	496112	496633	ENSG00000284452.1|AC093326.2|lncRNA|chr2:496112:496633:+	0	+
#Partially deleted in new
chr2	49926287	49926390	ENSG00000179915.22|NRXN1|pc|chr2:49926287:49926390:-	0	-
#Deleted in new
chr2	50016497	50016545	ENSG00000179915.22|NRXN1|pc|chr2:50016497:50016545:-	0	-
#Deleted in new
chr2	50174650	50175215	ENSG00000179915.22|NRXN1|pc|chr2:50174650:50175215:-	0	-
#Deleted in new
chr2	50185541	50185650	ENSG00000179915.22|NRXN1|pc|chr2:50185541:50185650:-	0	-
#Deleted in new
chr2	50551270	50551308	ENSG00000179915.22|NRXN1|pc|chr2:50551270:50551308:-	0	-
#Deleted in new
chr2	50551289	50551383	ENSG00000179915.22|NRXN1|pc|chr2:50551289:50551383:-	0	-
#Deleted in new
chr2	50912206	50912253	ENSG00000179915.22|NRXN1|pc|chr2:50912206:50912253:-	0	-
#Deleted in new
chr2	51052356	51052454	ENSG00000231918.1|AC007402.1|lncRNA|chr2:51052356:51052454:+	0	+
#Deleted in new
chr2	51072767	51072903	ENSG00000179915.22|NRXN1|pc|chr2:51072767:51072903:-	0	-
#Deleted in new
chr2	51201866	51202314	ENSG00000179915.22|NRXN1|pc|chr2:51201866:51202314:-	0	-
#Deleted in new
chr2	51201925	51202314	ENSG00000179915.22|NRXN1|pc|chr2:51201925:51202314:-	0	-
#Deleted in new
chr2	51201932	51202314	ENSG00000179915.22|NRXN1|pc|chr2:51201932:51202314:-	0	-
#Deleted in new
chr2	51201942	51202314	ENSG00000179915.22|NRXN1|pc|chr2:51201942:51202314:-	0	-
#Deleted in new
chr2	51221670	51221764	ENSG00000179915.22|NRXN1|pc|chr2:51221670:51221764:-	0	-
#Deleted in new
chr2	51221670	51221795	ENSG00000179915.22|NRXN1|pc|chr2:51221670:51221795:-	0	-
#Deleted in new
chr2	51378094	51378173	ENSG00000231918.1|AC007402.1|lncRNA|chr2:51378094:51378173:+	0	+
#Deleted in new
chr2	51527601	51527660	ENSG00000231918.1|AC007402.1|lncRNA|chr2:51527601:51527660:+	0	+
#Deleted in new
chr2	51762088	51762174	ENSG00000231918.1|AC007402.1|lncRNA|chr2:51762088:51762174:+	0	+
#Deleted in new
chr2	51861448	51861488	ENSG00000231918.1|AC007402.1|lncRNA|chr2:51861448:51861488:+	0	+
#Deleted in new
chr2	52316231	52316300	ENSG00000231918.1|AC007402.1|lncRNA|chr2:52316231:52316300:+	0	+
#Deleted in new
chr2	52349324	52351286	ENSG00000231918.1|AC007402.1|lncRNA|chr2:52349324:52351286:+	0	+
#Deleted in new
chr2	52352873	52352962	ENSG00000231918.1|AC007402.1|lncRNA|chr2:52352873:52352962:+	0	+
#Deleted in new
chr2	52373117	52373171	ENSG00000225444.1|LINC01867|lncRNA|chr2:52373117:52373171:+	0	+
#Deleted in new
chr2	52389462	52390012	ENSG00000225444.1|LINC01867|lncRNA|chr2:52389462:52390012:+	0	+
#Deleted in new
chr2	52494687	52494862	ENSG00000236837.1|AC139712.3|lncRNA|chr2:52494687:52494862:-	0	-
#Deleted in new
chr2	52495764	52495836	ENSG00000236837.1|AC139712.3|lncRNA|chr2:52495764:52495836:-	0	-
#Deleted in new
chr2	52498602	52498785	ENSG00000236837.1|AC139712.3|lncRNA|chr2:52498602:52498785:-	0	-
#Deleted in new
chr2	52722676	52722863	ENSG00000228033.5|AC010967.1|lncRNA|chr2:52722676:52722863:-	0	-
#Deleted in new
chr2	52726671	52726818	ENSG00000228033.5|AC010967.1|lncRNA|chr2:52726671:52726818:-	0	-
#Deleted in new
chr2	52732741	52732777	ENSG00000228033.5|AC010967.1|lncRNA|chr2:52732741:52732777:-	0	-
#Deleted in new
chr2	52866380	52866631	ENSG00000232604.1|AC010967.2|lncRNA|chr2:52866380:52866631:+	0	+
#Deleted in new
chr2	52897242	52897304	ENSG00000228033.5|AC010967.1|lncRNA|chr2:52897242:52897304:-	0	-
#Deleted in new
chr2	52909963	52910020	ENSG00000228033.5|AC010967.1|lncRNA|chr2:52909963:52910020:-	0	-
#Deleted in new
chr2	53532671	53533884	ENSG00000115239.21|ASB3|pc|chr2:53532671:53533884:-	0	-
#Deleted in new
chr2	53581203	53581378	ENSG00000115239.21|ASB3|pc|chr2:53581203:53581378:-	0	-
#Deleted in new
chr2	53603384	53603518	ENSG00000115239.21|ASB3|pc|chr2:53603384:53603518:-	0	-
#Deleted in new
chr2	53604273	53604421	ENSG00000115239.21|ASB3|pc|chr2:53604273:53604421:-	0	-
#Deleted in new
chr2	53604646	53604915	ENSG00000115239.21|ASB3|pc|chr2:53604646:53604915:-	0	-
#Deleted in new
chr2	53604757	53604915	ENSG00000115239.21|ASB3|pc|chr2:53604757:53604915:-	0	-
#Deleted in new
chr2	53604826	53604915	ENSG00000115239.21|ASB3|pc|chr2:53604826:53604915:-	0	-
#Deleted in new
chr2	53605919	53606078	ENSG00000115239.21|ASB3|pc|chr2:53605919:53606078:-	0	-
#Deleted in new
chr2	53605919	53606080	ENSG00000115239.21|ASB3|pc|chr2:53605919:53606080:-	0	-
#Deleted in new
chr2	53606421	53606459	ENSG00000115239.21|ASB3|pc|chr2:53606421:53606459:-	0	-
#Deleted in new
chr2	53748280	53748367	ENSG00000115239.21|ASB3|pc|chr2:53748280:53748367:-	0	-
#Deleted in new
chr2	53756870	53756938	ENSG00000115239.21|ASB3|pc|chr2:53756870:53756938:-	0	-
#Deleted in new
chr2	53763481	53763606	ENSG00000115239.21|ASB3|pc|chr2:53763481:53763606:-	0	-
#Deleted in new
chr2	53763481	53763606	ENSG00000270898.5|GPR75-ASB3|pc|chr2:53763481:53763606:-	0	-
#Deleted in new
chr2	53788582	53788705	ENSG00000068912.13|ERLEC1|pc|chr2:53788582:53788705:+	0	+
#Deleted in new
chr2	53820142	53820244	ENSG00000270898.5|GPR75-ASB3|pc|chr2:53820142:53820244:-	0	-
#Partially deleted in new
chr2	53869375	53870960	ENSG00000068878.14|PSME4|pc|chr2:53869375:53870960:-	0	-
#Deleted in new
chr2	53881455	53881508	ENSG00000068878.14|PSME4|pc|chr2:53881455:53881508:-	0	-
#Deleted in new
chr2	53973712	53973810	ENSG00000170634.12|ACYP2|pc|chr2:53973712:53973810:+	0	+
#Deleted in new
chr2	53975245	53975376	ENSG00000170634.12|ACYP2|pc|chr2:53975245:53975376:+	0	+
#Deleted in new
chr2	54057238	54057360	ENSG00000170634.12|ACYP2|pc|chr2:54057238:54057360:+	0	+
#Deleted in new
chr2	54065459	54066047	ENSG00000170634.12|ACYP2|pc|chr2:54065459:54066047:+	0	+
#Deleted in new
chr2	54084569	54085066	ENSG00000272156.1|AC008280.3|lncRNA|chr2:54084569:54085066:+	0	+
#Deleted in new
chr2	54123178	54123410	ENSG00000170634.12|ACYP2|pc|chr2:54123178:54123410:+	0	+
#Deleted in new
chr2	54141882	54143314	ENSG00000170634.12|ACYP2|pc|chr2:54141882:54143314:+	0	+
#Deleted in new
chr2	54267295	54267365	ENSG00000170634.12|ACYP2|pc|chr2:54267295:54267365:+	0	+
#Deleted in new
chr2	54520329	54520465	ENSG00000228108.1|AC092839.1|lncRNA|chr2:54520329:54520465:-	0	-
#Partially deleted in new
chr2	54526371	54528715	ENSG00000115306.15|SPTBN1|pc|chr2:54526371:54528715:+	0	+
#Deleted in new
chr2	54535039	54535138	ENSG00000228108.1|AC092839.1|lncRNA|chr2:54535039:54535138:-	0	-
#Deleted in new
chr2	54545367	54545537	ENSG00000234943.2|AC092839.2|lncRNA|chr2:54545367:54545537:-	0	-
#Deleted in new
chr2	545804	546036	ENSG00000225942.1|LINC01875|lncRNA|chr2:545804:546036:+	0	+
#Deleted in new
chr2	546239	546667	ENSG00000225942.1|LINC01875|lncRNA|chr2:546239:546667:+	0	+
#Deleted in new
chr2	54645156	54645158	ENSG00000115306.15|SPTBN1|pc|chr2:54645156:54645158:+	0	+
#Deleted in new
chr2	54679823	54680045	ENSG00000238018.2|AC093110.1|lncRNA|chr2:54679823:54680045:-	0	-
#Deleted in new
chr2	55056482	55056557	ENSG00000115310.17|RTN4|pc|chr2:55056482:55056557:-	0	-
#Deleted in new
chr2	55060605	55060753	ENSG00000115310.17|RTN4|pc|chr2:55060605:55060753:-	0	-
#Deleted in new
chr2	55080488	55080639	ENSG00000115310.17|RTN4|pc|chr2:55080488:55080639:-	0	-
#Deleted in new
chr2	55205711	55205728	ENSG00000162994.15|CLHC1|pc|chr2:55205711:55205728:-	0	-
#Deleted in new
chr2	55206817	55206940	ENSG00000162994.15|CLHC1|pc|chr2:55206817:55206940:-	0	-
#Deleted in new
chr2	55214386	55215150	ENSG00000203327.2|AC012358.1|lncRNA|chr2:55214386:55215150:-	0	-
#Deleted in new
chr2	55215974	55216126	ENSG00000203327.2|AC012358.1|lncRNA|chr2:55215974:55216126:-	0	-
#Partially deleted in new
chr2	55223995	55224360	ENSG00000162994.15|CLHC1|pc|chr2:55223995:55224360:-	0	-
#Deleted in new
chr2	55228031	55228204	ENSG00000162994.15|CLHC1|pc|chr2:55228031:55228204:-	0	-
#Partially deleted in new
chr2	55234118	55234561	ENSG00000143947.13|RPS27A|pc|chr2:55234118:55234561:+	0	+
#Partially deleted in new
chr2	55234241	55234301	ENSG00000143947.13|RPS27A|pc|chr2:55234241:55234301:+	0	+
#Deleted in new
chr2	55266380	55266518	ENSG00000085760.14|MTIF2|pc|chr2:55266380:55266518:-	0	-
#Partially deleted in new
chr2	55306096	55306228	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55306096:55306228:+	0	+
#Deleted in new
chr2	55314425	55314551	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55314425:55314551:+	0	+
#Partially deleted in new
chr2	55316878	55317212	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55316878:55317212:+	0	+
#Deleted in new
chr2	55320828	55320928	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55320828:55320928:+	0	+
#Deleted in new
chr2	55320828	55321131	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55320828:55321131:+	0	+
#Partially deleted in new
chr2	55329421	55329519	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55329421:55329519:+	0	+
#Deleted in new
chr2	55332138	55332261	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55332138:55332261:+	0	+
#Deleted in new
chr2	55338975	55339269	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55338975:55339269:+	0	+
#Deleted in new
chr2	55338975	55339270	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55338975:55339270:+	0	+
#Deleted in new
chr2	55339149	55339269	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55339149:55339269:+	0	+
#Deleted in new
chr2	55339850	55339974	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55339850:55339974:+	0	+
#Partially deleted in new
chr2	55345356	55345828	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55345356:55345828:+	0	+
#Partially deleted in new
chr2	55345356	55345887	ENSG00000240401.8|AC012358.3|lncRNA|chr2:55345356:55345887:+	0	+
#Deleted in new
chr2	55403386	55406158	ENSG00000115355.15|CCDC88A|pc|chr2:55403386:55406158:-	0	-
#Deleted in new
chr2	55538764	55539543	ENSG00000163001.11|CFAP36|pc|chr2:55538764:55539543:+	0	+
#Deleted in new
chr2	5555988	5556031	ENSG00000232835.1|AC107057.1|lncRNA|chr2:5555988:5556031:-	0	-
#Deleted in new
chr2	55634568	55634849	ENSG00000138035.14|PNPT1|pc|chr2:55634568:55634849:-	0	-
#Deleted in new
chr2	558203	558277	ENSG00000233633.1|AC093326.1|lncRNA|chr2:558203:558277:+	0	+
#Deleted in new
chr2	558733	558985	ENSG00000233633.1|AC093326.1|lncRNA|chr2:558733:558985:+	0	+
#Deleted in new
chr2	55952157	55952239	ENSG00000272180.1|AC011306.1|lncRNA|chr2:55952157:55952239:+	0	+
#Deleted in new
chr2	5602504	5602670	ENSG00000224128.1|LINC01248|lncRNA|chr2:5602504:5602670:-	0	-
#Deleted in new
chr2	56147629	56147740	ENSG00000271894.1|AC007744.1|lncRNA|chr2:56147629:56147740:+	0	+
#Deleted in new
chr2	56147629	56147740	ENSG00000272180.1|AC011306.1|lncRNA|chr2:56147629:56147740:+	0	+
#Deleted in new
chr2	56177224	56177364	ENSG00000272180.1|AC011306.1|lncRNA|chr2:56177224:56177364:+	0	+
#Deleted in new
chr2	56177562	56177735	ENSG00000233251.7|AC007743.1|lncRNA|chr2:56177562:56177735:-	0	-
#Deleted in new
chr2	56179602	56180162	ENSG00000233251.7|AC007743.1|lncRNA|chr2:56179602:56180162:-	0	-
#Deleted in new
chr2	56180045	56180189	ENSG00000272180.1|AC011306.1|lncRNA|chr2:56180045:56180189:+	0	+
#Deleted in new
chr2	56181126	56181652	ENSG00000272180.1|AC011306.1|lncRNA|chr2:56181126:56181652:+	0	+
#Deleted in new
chr2	5618326	5618541	ENSG00000230090.5|AC108025.1|lncRNA|chr2:5618326:5618541:-	0	-
#Deleted in new
chr2	5621203	5621334	ENSG00000230090.5|AC108025.1|lncRNA|chr2:5621203:5621334:-	0	-
#Deleted in new
chr2	5634130	5634316	ENSG00000230090.5|AC108025.1|lncRNA|chr2:5634130:5634316:-	0	-
#Deleted in new
chr2	5649838	5649911	ENSG00000230090.5|AC108025.1|lncRNA|chr2:5649838:5649911:-	0	-
#Deleted in new
chr2	5684425	5684539	ENSG00000230090.5|AC108025.1|lncRNA|chr2:5684425:5684539:-	0	-
#Deleted in new
chr2	5696219	5696293	ENSG00000242540.2|AC108025.2|lncRNA|chr2:5696219:5696293:+	0	+
#Deleted in new
chr2	5703566	5703621	ENSG00000242540.2|AC108025.2|lncRNA|chr2:5703566:5703621:+	0	+
#Partially deleted in new
chr2	5707107	5708095	ENSG00000242540.2|AC108025.2|lncRNA|chr2:5707107:5708095:+	0	+
#Deleted in new
chr2	578001	578145	ENSG00000233633.1|AC093326.1|lncRNA|chr2:578001:578145:+	0	+
#Deleted in new
chr2	58018015	58018086	ENSG00000028116.16|VRK2|pc|chr2:58018015:58018086:+	0	+
#Deleted in new
chr2	58026743	58026861	ENSG00000028116.16|VRK2|pc|chr2:58026743:58026861:+	0	+
#Partially deleted in new
chr2	58028297	58028398	ENSG00000028116.16|VRK2|pc|chr2:58028297:58028398:+	0	+
#Deleted in new
chr2	58046641	58046868	ENSG00000028116.16|VRK2|pc|chr2:58046641:58046868:+	0	+
#Deleted in new
chr2	58046690	58046868	ENSG00000028116.16|VRK2|pc|chr2:58046690:58046868:+	0	+
#Deleted in new
chr2	58046711	58046821	ENSG00000028116.16|VRK2|pc|chr2:58046711:58046821:+	0	+
#Deleted in new
chr2	58046714	58046821	ENSG00000028116.16|VRK2|pc|chr2:58046714:58046821:+	0	+
#Deleted in new
chr2	58046874	58047128	ENSG00000028116.16|VRK2|pc|chr2:58046874:58047128:+	0	+
#Deleted in new
chr2	58048526	58048587	ENSG00000028116.16|VRK2|pc|chr2:58048526:58048587:+	0	+
#Partially deleted in new
chr2	5811620	5811784	ENSG00000237266.1|LINC01810|lncRNA|chr2:5811620:5811784:-	0	-
#Deleted in new
chr2	5812538	5812596	ENSG00000237266.1|LINC01810|lncRNA|chr2:5812538:5812596:-	0	-
#Deleted in new
chr2	58154753	58154802	ENSG00000028116.16|VRK2|pc|chr2:58154753:58154802:+	0	+
#Partially deleted in new
chr2	58213504	58213706	ENSG00000115392.11|FANCL|pc|chr2:58213504:58213706:-	0	-
#Deleted in new
chr2	58275876	58276182	ENSG00000225226.1|LINC01795|lncRNA|chr2:58275876:58276182:+	0	+
#Deleted in new
chr2	59255162	59255262	ENSG00000222030.1|LINC01793|lncRNA|chr2:59255162:59255262:+	0	+
#Deleted in new
chr2	59322257	59322318	ENSG00000233891.7|AC007179.2|lncRNA|chr2:59322257:59322318:-	0	-
#Deleted in new
chr2	59512008	59512205	ENSG00000271955.1|AC007100.1|lncRNA|chr2:59512008:59512205:-	0	-
#Deleted in new
chr2	59600372	59600528	ENSG00000233891.7|AC007179.2|lncRNA|chr2:59600372:59600528:-	0	-
#Deleted in new
chr2	59686259	59686368	ENSG00000233891.7|AC007179.2|lncRNA|chr2:59686259:59686368:-	0	-
#Partially deleted in new
chr2	5970958	5974250	ENSG00000232044.6|LINC01105|lncRNA|chr2:5970958:5974250:+	0	+
#Partially deleted in new
chr2	5970972	5974241	ENSG00000232044.6|LINC01105|lncRNA|chr2:5970972:5974241:+	0	+
#Deleted in new
chr2	5973308	5973429	ENSG00000232044.6|LINC01105|lncRNA|chr2:5973308:5973429:+	0	+
#Deleted in new
chr2	6000982	6001275	ENSG00000232044.6|LINC01105|lncRNA|chr2:6000982:6001275:+	0	+
#Deleted in new
chr2	60391305	60391375	ENSG00000223929.1|MIR4432HG|lncRNA|chr2:60391305:60391375:-	0	-
#Deleted in new
chr2	60825131	60825285	ENSG00000228414.6|LINC01185|lncRNA|chr2:60825131:60825285:-	0	-
#Deleted in new
chr2	60844056	60844226	ENSG00000228414.6|LINC01185|lncRNA|chr2:60844056:60844226:-	0	-
#Partially deleted in new
chr2	60847759	60849234	ENSG00000228414.6|LINC01185|lncRNA|chr2:60847759:60849234:-	0	-
#Deleted in new
chr2	60920382	60920478	ENSG00000162924.13|REL|pc|chr2:60920382:60920478:+	0	+
#Partially deleted in new
chr2	61074982	61075173	ENSG00000162929.13|KIAA1841|pc|chr2:61074982:61075173:+	0	+
#Partially deleted in new
chr2	61090433	61090694	ENSG00000162929.13|KIAA1841|pc|chr2:61090433:61090694:+	0	+
#Deleted in new
chr2	61093280	61093364	ENSG00000162929.13|KIAA1841|pc|chr2:61093280:61093364:+	0	+
#Deleted in new
chr2	61137463	61138034	ENSG00000162929.13|KIAA1841|pc|chr2:61137463:61138034:+	0	+
#Deleted in new
chr2	61141591	61143945	ENSG00000212978.6|AC016747.1|lncRNA|chr2:61141591:61143945:-	0	-
#Deleted in new
chr2	61143554	61144266	ENSG00000212978.6|AC016747.1|lncRNA|chr2:61143554:61144266:-	0	-
#Deleted in new
chr2	61143567	61143945	ENSG00000212978.6|AC016747.1|lncRNA|chr2:61143567:61143945:-	0	-
#Deleted in new
chr2	61144168	61144266	ENSG00000212978.6|AC016747.1|lncRNA|chr2:61144168:61144266:-	0	-
#Deleted in new
chr2	61144405	61144642	ENSG00000212978.6|AC016747.1|lncRNA|chr2:61144405:61144642:-	0	-
#Deleted in new
chr2	61144772	61144891	ENSG00000212978.6|AC016747.1|lncRNA|chr2:61144772:61144891:-	0	-
#Deleted in new
chr2	61144772	61144950	ENSG00000212978.6|AC016747.1|lncRNA|chr2:61144772:61144950:-	0	-
#Deleted in new
chr2	61144772	61144952	ENSG00000212978.6|AC016747.1|lncRNA|chr2:61144772:61144952:-	0	-
#Deleted in new
chr2	61144772	61144969	ENSG00000212978.6|AC016747.1|lncRNA|chr2:61144772:61144969:-	0	-
#Deleted in new
chr2	61145067	61145196	ENSG00000237651.6|C2orf74|pc|chr2:61145067:61145196:+	0	+
#Deleted in new
chr2	61145107	61145196	ENSG00000237651.6|C2orf74|pc|chr2:61145107:61145196:+	0	+
#Deleted in new
chr2	61145129	61145196	ENSG00000237651.6|C2orf74|pc|chr2:61145129:61145196:+	0	+
#Deleted in new
chr2	61145130	61145196	ENSG00000237651.6|C2orf74|pc|chr2:61145130:61145196:+	0	+
#Deleted in new
chr2	61151432	61151714	ENSG00000271889.1|AC016747.2|lncRNA|chr2:61151432:61151714:-	0	-
#Deleted in new
chr2	61151815	61152128	ENSG00000271889.1|AC016747.2|lncRNA|chr2:61151815:61152128:-	0	-
#Deleted in new
chr2	61157861	61158012	ENSG00000237651.6|C2orf74|pc|chr2:61157861:61158012:+	0	+
#Deleted in new
chr2	61159317	61159439	ENSG00000237651.6|C2orf74|pc|chr2:61159317:61159439:+	0	+
#Partially deleted in new
chr2	61161697	61161895	ENSG00000271889.1|AC016747.2|lncRNA|chr2:61161697:61161895:-	0	-
#Partially deleted in new
chr2	61199978	61200769	ENSG00000273302.1|AC016747.3|lncRNA|chr2:61199978:61200769:+	0	+
#Partially deleted in new
chr2	61206759	61208977	ENSG00000115464.14|USP34|pc|chr2:61206759:61208977:-	0	-
#Partially deleted in new
chr2	61222618	61222975	ENSG00000115464.14|USP34|pc|chr2:61222618:61222975:-	0	-
#Deleted in new
chr2	61346256	61346347	ENSG00000115464.14|USP34|pc|chr2:61346256:61346347:-	0	-
#Deleted in new
chr2	61480299	61480410	ENSG00000270820.5|AC016727.1|lncRNA|chr2:61480299:61480410:+	0	+
#Deleted in new
chr2	61480324	61480583	ENSG00000270820.5|AC016727.1|lncRNA|chr2:61480324:61480583:+	0	+
#Deleted in new
chr2	61482626	61482720	ENSG00000270820.5|AC016727.1|lncRNA|chr2:61482626:61482720:+	0	+
#Deleted in new
chr2	61482626	61482736	ENSG00000270820.5|AC016727.1|lncRNA|chr2:61482626:61482736:+	0	+
#Partially deleted in new
chr2	61482626	61482926	ENSG00000270820.5|AC016727.1|lncRNA|chr2:61482626:61482926:+	0	+
#Partially deleted in new
chr2	61483372	61483941	ENSG00000270820.5|AC016727.1|lncRNA|chr2:61483372:61483941:+	0	+
#Partially deleted in new
chr2	61483936	61485962	ENSG00000082898.16|XPO1|pc|chr2:61483936:61485962:-	0	-
#Partially deleted in new
chr2	61493893	61494743	ENSG00000082898.16|XPO1|pc|chr2:61493893:61494743:-	0	-
#Deleted in new
chr2	61534422	61534512	ENSG00000082898.16|XPO1|pc|chr2:61534422:61534512:-	0	-
#Deleted in new
chr2	61534557	61534678	ENSG00000082898.16|XPO1|pc|chr2:61534557:61534678:-	0	-
#Deleted in new
chr2	61836582	61836872	ENSG00000170264.12|FAM161A|pc|chr2:61836582:61836872:-	0	-
#Deleted in new
chr2	61846758	61846996	ENSG00000170264.12|FAM161A|pc|chr2:61846758:61846996:-	0	-
#Deleted in new
chr2	61885714	61886082	ENSG00000236498.1|AC107081.2|lncRNA|chr2:61885714:61886082:+	0	+
#Partially deleted in new
chr2	61888723	61888842	ENSG00000173163.10|COMMD1|pc|chr2:61888723:61888842:+	0	+
#Deleted in new
chr2	61915681	61915773	ENSG00000173163.10|COMMD1|pc|chr2:61915681:61915773:+	0	+
#Deleted in new
chr2	61918571	61918619	ENSG00000173163.10|COMMD1|pc|chr2:61918571:61918619:+	0	+
#Deleted in new
chr2	61968968	61969130	ENSG00000173163.10|COMMD1|pc|chr2:61968968:61969130:+	0	+
#Deleted in new
chr2	62069446	62070382	ENSG00000229839.6|AC018462.1|lncRNA|chr2:62069446:62070382:-	0	-
#Deleted in new
chr2	62079714	62079812	ENSG00000229839.6|AC018462.1|lncRNA|chr2:62079714:62079812:-	0	-
#Deleted in new
chr2	62084817	62084871	ENSG00000229839.6|AC018462.1|lncRNA|chr2:62084817:62084871:-	0	-
#Deleted in new
chr2	62100187	62100340	ENSG00000229839.6|AC018462.1|lncRNA|chr2:62100187:62100340:-	0	-
#Deleted in new
chr2	62463126	62463318	ENSG00000228541.1|AC093159.1|lncRNA|chr2:62463126:62463318:+	0	+
#Deleted in new
chr2	62463838	62464070	ENSG00000228541.1|AC093159.1|lncRNA|chr2:62463838:62464070:+	0	+
#Deleted in new
chr2	62611871	62612223	ENSG00000226622.5|AC092155.1|lncRNA|chr2:62611871:62612223:-	0	-
#Deleted in new
chr2	62612315	62612391	ENSG00000226622.5|AC092155.1|lncRNA|chr2:62612315:62612391:-	0	-
#Deleted in new
chr2	62613605	62613702	ENSG00000226622.5|AC092155.1|lncRNA|chr2:62613605:62613702:-	0	-
#Deleted in new
chr2	62624952	62625011	ENSG00000226622.5|AC092155.1|lncRNA|chr2:62624952:62625011:-	0	-
#Deleted in new
chr2	62631401	62631565	ENSG00000226622.5|AC092155.1|lncRNA|chr2:62631401:62631565:-	0	-
#Partially deleted in new
chr2	6312953	6313149	ENSG00000234275.1|AC017053.1|lncRNA|chr2:6312953:6313149:-	0	-
#Deleted in new
chr2	63152913	63152945	ENSG00000143951.15|WDPCP|pc|chr2:63152913:63152945:-	0	-
#Deleted in new
chr2	63152913	63153114	ENSG00000143951.15|WDPCP|pc|chr2:63152913:63153114:-	0	-
#Deleted in new
chr2	63153494	63153574	ENSG00000143951.15|WDPCP|pc|chr2:63153494:63153574:-	0	-
#Deleted in new
chr2	63228387	63229872	ENSG00000143951.15|WDPCP|pc|chr2:63228387:63229872:-	0	-
#Deleted in new
chr2	63359794	63360076	ENSG00000143951.15|WDPCP|pc|chr2:63359794:63360076:-	0	-
#Deleted in new
chr2	63368822	63369458	ENSG00000143951.15|WDPCP|pc|chr2:63368822:63369458:-	0	-
#Deleted in new
chr2	63477814	63477934	ENSG00000143951.15|WDPCP|pc|chr2:63477814:63477934:-	0	-
#Deleted in new
chr2	63517891	63519268	ENSG00000279485.1|AC016734.2|lncRNA|chr2:63517891:63519268:-	0	-
#Deleted in new
chr2	63564174	63564624	ENSG00000143951.15|WDPCP|pc|chr2:63564174:63564624:-	0	-
#Deleted in new
chr2	63571374	63571626	ENSG00000143951.15|WDPCP|pc|chr2:63571374:63571626:-	0	-
#Partially deleted in new
chr2	63593123	63593628	ENSG00000014641.17|MDH1|pc|chr2:63593123:63593628:+	0	+
#Deleted in new
chr2	63711496	63711591	ENSG00000143951.15|WDPCP|pc|chr2:63711496:63711591:-	0	-
#Deleted in new
chr2	63827621	63827843	ENSG00000143951.15|WDPCP|pc|chr2:63827621:63827843:-	0	-
#Deleted in new
chr2	63855418	63855425	ENSG00000169764.15|UGP2|pc|chr2:63855418:63855425:+	0	+
#Deleted in new
chr2	63855566	63855643	ENSG00000169764.15|UGP2|pc|chr2:63855566:63855643:+	0	+
#Deleted in new
chr2	63855717	63855728	ENSG00000169764.15|UGP2|pc|chr2:63855717:63855728:+	0	+
#Partially deleted in new
chr2	63855908	63856433	ENSG00000169764.15|UGP2|pc|chr2:63855908:63856433:+	0	+
#Deleted in new
chr2	63857549	63857594	ENSG00000169764.15|UGP2|pc|chr2:63857549:63857594:+	0	+
#Deleted in new
chr2	63857549	63857618	ENSG00000169764.15|UGP2|pc|chr2:63857549:63857618:+	0	+
#Partially deleted in new
chr2	63857549	63857718	ENSG00000169764.15|UGP2|pc|chr2:63857549:63857718:+	0	+
#Deleted in new
chr2	63859205	63859211	ENSG00000169764.15|UGP2|pc|chr2:63859205:63859211:+	0	+
#Deleted in new
chr2	63974985	63975602	ENSG00000143952.19|VPS54|pc|chr2:63974985:63975602:-	0	-
#Partially deleted in new
chr2	64104553	64104597	ENSG00000197329.11|PELI1|pc|chr2:64104553:64104597:-	0	-
#Deleted in new
chr2	64226446	64226492	ENSG00000225889.7|AC012368.1|lncRNA|chr2:64226446:64226492:+	0	+
#Deleted in new
chr2	64229170	64229288	ENSG00000225889.7|AC012368.1|lncRNA|chr2:64229170:64229288:+	0	+
#Deleted in new
chr2	64248323	64248538	ENSG00000225889.7|AC012368.1|lncRNA|chr2:64248323:64248538:+	0	+
#Deleted in new
chr2	64252419	64252859	ENSG00000225889.7|AC012368.1|lncRNA|chr2:64252419:64252859:+	0	+
#Deleted in new
chr2	64338066	64338357	ENSG00000238201.1|AC114752.2|lncRNA|chr2:64338066:64338357:-	0	-
#Deleted in new
chr2	64341534	64341647	ENSG00000238201.1|AC114752.2|lncRNA|chr2:64341534:64341647:-	0	-
#Partially deleted in new
chr2	64395219	64395665	ENSG00000223935.1|AC008074.1|lncRNA|chr2:64395219:64395665:-	0	-
#Partially deleted in new
chr2	64439902	64439974	ENSG00000223935.1|AC008074.1|lncRNA|chr2:64439902:64439974:-	0	-
#Duplicated in new
chr2	64454446	64454581	ENSG00000119862.12|LGALSL|pc|chr2:64454446:64454581:+	0	+
#Deleted in new
chr2	64612765	64613085	ENSG00000233694.5|AC007365.3|lncRNA|chr2:64612765:64613085:+	0	+
#Deleted in new
chr2	64613177	64613290	ENSG00000233694.5|AC007365.3|lncRNA|chr2:64613177:64613290:+	0	+
#Partially deleted in new
chr2	64846129	64847612	ENSG00000234572.1|LINC01800|lncRNA|chr2:64846129:64847612:-	0	-
#Deleted in new
chr2	64863413	64863626	ENSG00000234572.1|LINC01800|lncRNA|chr2:64863413:64863626:-	0	-
#Deleted in new
chr2	64901839	64904620	ENSG00000237638.1|LINC02245|lncRNA|chr2:64901839:64904620:-	0	-
#Deleted in new
chr2	64904990	64905137	ENSG00000237638.1|LINC02245|lncRNA|chr2:64904990:64905137:-	0	-
#Deleted in new
chr2	65011311	65011545	ENSG00000115902.10|SLC1A4|pc|chr2:65011311:65011545:+	0	+
#Deleted in new
chr2	6502725	6502855	ENSG00000226488.1|LINC01824|lncRNA|chr2:6502725:6502855:+	0	+
#Deleted in new
chr2	65030726	65030812	ENSG00000232613.6|AC007386.2|lncRNA|chr2:65030726:65030812:+	0	+
#Deleted in new
chr2	65030746	65030812	ENSG00000232613.6|AC007386.2|lncRNA|chr2:65030746:65030812:+	0	+
#Deleted in new
chr2	65030945	65031259	ENSG00000232613.6|AC007386.2|lncRNA|chr2:65030945:65031259:+	0	+
#Deleted in new
chr2	6503658	6503806	ENSG00000226488.1|LINC01824|lncRNA|chr2:6503658:6503806:+	0	+
#Deleted in new
chr2	65037402	65037497	ENSG00000232613.6|AC007386.2|lncRNA|chr2:65037402:65037497:+	0	+
#Deleted in new
chr2	65052379	65053017	ENSG00000232613.6|AC007386.2|lncRNA|chr2:65052379:65053017:+	0	+
#Deleted in new
chr2	65334114	65334265	ENSG00000198369.9|SPRED2|pc|chr2:65334114:65334265:-	0	-
#Deleted in new
chr2	65373699	65373836	ENSG00000232693.2|AC012370.1|lncRNA|chr2:65373699:65373836:-	0	-
#Deleted in new
chr2	65373975	65374125	ENSG00000232693.2|AC012370.1|lncRNA|chr2:65373975:65374125:-	0	-
#Partially deleted in new
chr2	65377612	65377750	ENSG00000198369.9|SPRED2|pc|chr2:65377612:65377750:-	0	-
#Deleted in new
chr2	65380625	65380685	ENSG00000232693.2|AC012370.1|lncRNA|chr2:65380625:65380685:-	0	-
#Deleted in new
chr2	65439887	65440085	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65439887:65440085:-	0	-
#Deleted in new
chr2	65441928	65442501	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65441928:65442501:-	0	-
#Deleted in new
chr2	65442054	65442501	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65442054:65442501:-	0	-
#Deleted in new
chr2	65442155	65442501	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65442155:65442501:-	0	-
#Partially deleted in new
chr2	65450232	65450759	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65450232:65450759:-	0	-
#Deleted in new
chr2	65450475	65450759	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65450475:65450759:-	0	-
#Deleted in new
chr2	65450516	65450759	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65450516:65450759:-	0	-
#Deleted in new
chr2	65450589	65450759	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65450589:65450759:-	0	-
#Deleted in new
chr2	65453882	65453982	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65453882:65453982:-	0	-
#Deleted in new
chr2	65455511	65455923	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65455511:65455923:-	0	-
#Deleted in new
chr2	65455659	65455681	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65455659:65455681:-	0	-
#Deleted in new
chr2	65455659	65455760	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65455659:65455760:-	0	-
#Deleted in new
chr2	65456018	65456096	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65456018:65456096:-	0	-
#Deleted in new
chr2	65456018	65456306	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65456018:65456306:-	0	-
#Deleted in new
chr2	65456018	65456551	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65456018:65456551:-	0	-
#Deleted in new
chr2	65456304	65456328	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65456304:65456328:-	0	-
#Deleted in new
chr2	65456304	65456508	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65456304:65456508:-	0	-
#Deleted in new
chr2	65456304	65456512	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65456304:65456512:-	0	-
#Deleted in new
chr2	65456304	65456543	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65456304:65456543:-	0	-
#Deleted in new
chr2	65456304	65456571	ENSG00000234255.8|AC012370.2|lncRNA|chr2:65456304:65456571:-	0	-
#Deleted in new
chr2	65469513	65469611	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65469513:65469611:+	0	+
#Deleted in new
chr2	65476257	65476349	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65476257:65476349:+	0	+
#Deleted in new
chr2	65483059	65483152	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65483059:65483152:+	0	+
#Deleted in new
chr2	65589565	65589819	ENSG00000235725.1|AC007389.3|lncRNA|chr2:65589565:65589819:-	0	-
#Deleted in new
chr2	65590904	65591037	ENSG00000235725.1|AC007389.3|lncRNA|chr2:65590904:65591037:-	0	-
#Partially deleted in new
chr2	65601156	65602362	ENSG00000235725.1|AC007389.3|lncRNA|chr2:65601156:65602362:-	0	-
#Deleted in new
chr2	65623271	65623507	ENSG00000281920.1|AC007389.5|lncRNA|chr2:65623271:65623507:+	0	+
#Deleted in new
chr2	65624232	65624478	ENSG00000281920.1|AC007389.5|lncRNA|chr2:65624232:65624478:+	0	+
#Deleted in new
chr2	65628162	65628424	ENSG00000281920.1|AC007389.5|lncRNA|chr2:65628162:65628424:+	0	+
#Deleted in new
chr2	65640114	65640177	ENSG00000235725.1|AC007389.3|lncRNA|chr2:65640114:65640177:-	0	-
#Deleted in new
chr2	65731674	65731950	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65731674:65731950:+	0	+
#Deleted in new
chr2	65731675	65731950	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65731675:65731950:+	0	+
#Deleted in new
chr2	65732892	65732934	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65732892:65732934:+	0	+
#Deleted in new
chr2	65732892	65732956	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65732892:65732956:+	0	+
#Deleted in new
chr2	65732892	65733041	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65732892:65733041:+	0	+
#Deleted in new
chr2	65733239	65733389	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65733239:65733389:+	0	+
#Deleted in new
chr2	65733872	65733983	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65733872:65733983:+	0	+
#Deleted in new
chr2	65754748	65754783	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65754748:65754783:+	0	+
#Deleted in new
chr2	65754748	65754911	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65754748:65754911:+	0	+
#Deleted in new
chr2	65770012	65770104	ENSG00000204929.12|AC007389.1|lncRNA|chr2:65770012:65770104:+	0	+
#Deleted in new
chr2	66016268	66016409	ENSG00000204929.12|AC007389.1|lncRNA|chr2:66016268:66016409:+	0	+
#Deleted in new
chr2	66081289	66081402	ENSG00000204929.12|AC007389.1|lncRNA|chr2:66081289:66081402:+	0	+
#Deleted in new
chr2	66084509	66084638	ENSG00000204929.12|AC007389.1|lncRNA|chr2:66084509:66084638:+	0	+
#Deleted in new
chr2	66084509	66084639	ENSG00000204929.12|AC007389.1|lncRNA|chr2:66084509:66084639:+	0	+
#Deleted in new
chr2	6615388	6615696	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6615388:6615696:-	0	-
#Deleted in new
chr2	6615589	6615696	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6615589:6615696:-	0	-
#Deleted in new
chr2	6615789	6615914	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6615789:6615914:-	0	-
#Deleted in new
chr2	6618543	6618689	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6618543:6618689:-	0	-
#Deleted in new
chr2	66235376	66235655	ENSG00000227293.1|AC118345.1|lncRNA|chr2:66235376:66235655:-	0	-
#Deleted in new
chr2	66236126	66236213	ENSG00000227293.1|AC118345.1|lncRNA|chr2:66236126:66236213:-	0	-
#Deleted in new
chr2	6625028	6625127	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6625028:6625127:-	0	-
#Deleted in new
chr2	6625028	6625145	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6625028:6625145:-	0	-
#Deleted in new
chr2	6626108	6626238	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6626108:6626238:-	0	-
#Deleted in new
chr2	6626111	6626238	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6626111:6626238:-	0	-
#Deleted in new
chr2	6626121	6626238	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6626121:6626238:-	0	-
#Deleted in new
chr2	6626122	6626238	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6626122:6626238:-	0	-
#Deleted in new
chr2	6626136	6626238	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6626136:6626238:-	0	-
#Deleted in new
chr2	6626138	6626238	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6626138:6626238:-	0	-
#Partially deleted in new
chr2	6633788	6633969	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6633788:6633969:-	0	-
#Deleted in new
chr2	6633837	6633969	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6633837:6633969:-	0	-
#Deleted in new
chr2	6633868	6633969	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6633868:6633969:-	0	-
#Deleted in new
chr2	6633916	6633969	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6633916:6633969:-	0	-
#Deleted in new
chr2	6633932	6633969	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6633932:6633969:-	0	-
#Deleted in new
chr2	6634799	6634870	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6634799:6634870:-	0	-
#Deleted in new
chr2	6634799	6634872	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6634799:6634872:-	0	-
#Deleted in new
chr2	6634799	6634911	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6634799:6634911:-	0	-
#Deleted in new
chr2	6634816	6634911	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6634816:6634911:-	0	-
#Partially deleted in new
chr2	6635833	6636244	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6635833:6636244:-	0	-
#Deleted in new
chr2	6635943	6635992	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6635943:6635992:-	0	-
#Deleted in new
chr2	6635943	6636163	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6635943:6636163:-	0	-
#Deleted in new
chr2	6635943	6636220	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6635943:6636220:-	0	-
#Deleted in new
chr2	6636060	6636726	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6636060:6636726:-	0	-
#Deleted in new
chr2	6636398	6636726	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6636398:6636726:-	0	-
#Deleted in new
chr2	6636576	6636726	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6636576:6636726:-	0	-
#Deleted in new
chr2	6636632	6636726	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6636632:6636726:-	0	-
#Deleted in new
chr2	6636807	6636848	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6636807:6636848:-	0	-
#Partially deleted in new
chr2	6639050	6639118	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6639050:6639118:-	0	-
#Partially deleted in new
chr2	6639050	6639125	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6639050:6639125:-	0	-
#Deleted in new
chr2	66390912	66392450	ENSG00000232164.1|LINC01873|lncRNA|chr2:66390912:66392450:+	0	+
#Deleted in new
chr2	6647535	6647568	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6647535:6647568:-	0	-
#Deleted in new
chr2	6647535	6647721	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6647535:6647721:-	0	-
#Deleted in new
chr2	6650105	6650124	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650124:-	0	-
#Deleted in new
chr2	6650105	6650209	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650209:-	0	-
#Deleted in new
chr2	6650105	6650222	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650222:-	0	-
#Deleted in new
chr2	6650105	6650243	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650243:-	0	-
#Deleted in new
chr2	6650105	6650247	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650247:-	0	-
#Deleted in new
chr2	6650105	6650310	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650310:-	0	-
#Deleted in new
chr2	6650105	6650444	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650444:-	0	-
#Deleted in new
chr2	6650105	6650501	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650501:-	0	-
#Deleted in new
chr2	6650105	6650507	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650507:-	0	-
#Deleted in new
chr2	6650105	6650519	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650519:-	0	-
#Deleted in new
chr2	6650105	6650525	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650525:-	0	-
#Deleted in new
chr2	6650105	6650535	ENSG00000236172.6|MIR7515HG|lncRNA|chr2:6650105:6650535:-	0	-
#Partially deleted in new
chr2	66713449	66713541	ENSG00000232046.6|LINC01798|lncRNA|chr2:66713449:66713541:+	0	+
#Deleted in new
chr2	66922164	66922222	ENSG00000232688.1|LINC01628|lncRNA|chr2:66922164:66922222:-	0	-
#Deleted in new
chr2	66933102	66933249	ENSG00000230525.5|LINC01799|lncRNA|chr2:66933102:66933249:+	0	+
#Deleted in new
chr2	66934902	66934972	ENSG00000230525.5|LINC01799|lncRNA|chr2:66934902:66934972:+	0	+
#Partially deleted in new
chr2	669756	670975	ENSG00000151353.14|TMEM18|pc|chr2:669756:670975:-	0	-
#Deleted in new
chr2	67086445	67086555	ENSG00000235885.7|LINC01828|lncRNA|chr2:67086445:67086555:+	0	+
#Deleted in new
chr2	67146567	67146658	ENSG00000236780.5|LINC01829|lncRNA|chr2:67146567:67146658:-	0	-
#Deleted in new
chr2	67148336	67148437	ENSG00000236780.5|LINC01829|lncRNA|chr2:67148336:67148437:-	0	-
#Deleted in new
chr2	67164536	67164587	ENSG00000236780.5|LINC01829|lncRNA|chr2:67164536:67164587:-	0	-
#Deleted in new
chr2	67180987	67181223	ENSG00000235885.7|LINC01828|lncRNA|chr2:67180987:67181223:+	0	+
#Deleted in new
chr2	67205508	67205563	ENSG00000236780.5|LINC01829|lncRNA|chr2:67205508:67205563:-	0	-
#Deleted in new
chr2	67229398	67229495	ENSG00000235885.7|LINC01828|lncRNA|chr2:67229398:67229495:+	0	+
#Partially deleted in new
chr2	67243278	67243361	ENSG00000235885.7|LINC01828|lncRNA|chr2:67243278:67243361:+	0	+
#Deleted in new
chr2	67252617	67252888	ENSG00000235885.7|LINC01828|lncRNA|chr2:67252617:67252888:+	0	+
#Deleted in new
chr2	67252627	67252888	ENSG00000235885.7|LINC01828|lncRNA|chr2:67252627:67252888:+	0	+
#Deleted in new
chr2	6728176	6728247	ENSG00000205837.7|LINC00487|lncRNA|chr2:6728176:6728247:-	0	-
#Deleted in new
chr2	6729167	6729606	ENSG00000205837.7|LINC00487|lncRNA|chr2:6729167:6729606:-	0	-
#Deleted in new
chr2	6729167	6729662	ENSG00000205837.7|LINC00487|lncRNA|chr2:6729167:6729662:-	0	-
#Deleted in new
chr2	6729516	6729606	ENSG00000205837.7|LINC00487|lncRNA|chr2:6729516:6729606:-	0	-
#Deleted in new
chr2	67301488	67301546	ENSG00000235885.7|LINC01828|lncRNA|chr2:67301488:67301546:+	0	+
#Deleted in new
chr2	6730648	6730743	ENSG00000205837.7|LINC00487|lncRNA|chr2:6730648:6730743:-	0	-
#Deleted in new
chr2	67309214	67309323	ENSG00000235885.7|LINC01828|lncRNA|chr2:67309214:67309323:+	0	+
#Deleted in new
chr2	6731154	6731322	ENSG00000205837.7|LINC00487|lncRNA|chr2:6731154:6731322:-	0	-
#Deleted in new
chr2	6731154	6732260	ENSG00000205837.7|LINC00487|lncRNA|chr2:6731154:6732260:-	0	-
#Deleted in new
chr2	6731158	6731226	ENSG00000205837.7|LINC00487|lncRNA|chr2:6731158:6731226:-	0	-
#Partially deleted in new
chr2	67325079	67325304	ENSG00000236605.1|AC023115.1|lncRNA|chr2:67325079:67325304:+	0	+
#Deleted in new
chr2	6732695	6732804	ENSG00000205837.7|LINC00487|lncRNA|chr2:6732695:6732804:-	0	-
#Deleted in new
chr2	6736622	6736715	ENSG00000205837.7|LINC00487|lncRNA|chr2:6736622:6736715:-	0	-
#Partially deleted in new
chr2	675509	676662	ENSG00000151353.14|TMEM18|pc|chr2:675509:676662:-	0	-
#Partially deleted in new
chr2	675608	676238	ENSG00000151353.14|TMEM18|pc|chr2:675608:676238:-	0	-
#Deleted in new
chr2	67566775	67566972	ENSG00000224173.1|AC007422.1|lncRNA|chr2:67566775:67566972:+	0	+
#Deleted in new
chr2	67568007	67568156	ENSG00000224173.1|AC007422.1|lncRNA|chr2:67568007:67568156:+	0	+
#Deleted in new
chr2	675757	676162	ENSG00000151353.14|TMEM18|pc|chr2:675757:676162:-	0	-
#Deleted in new
chr2	675757	676238	ENSG00000151353.14|TMEM18|pc|chr2:675757:676238:-	0	-
#Deleted in new
chr2	676573	676642	ENSG00000151353.14|TMEM18|pc|chr2:676573:676642:-	0	-
#Deleted in new
chr2	676573	676704	ENSG00000151353.14|TMEM18|pc|chr2:676573:676704:-	0	-
#Deleted in new
chr2	676573	676787	ENSG00000151353.14|TMEM18|pc|chr2:676573:676787:-	0	-
#Deleted in new
chr2	6770078	6770311	ENSG00000205837.7|LINC00487|lncRNA|chr2:6770078:6770311:-	0	-
#Deleted in new
chr2	67823873	67823979	ENSG00000237013.1|LINC01812|lncRNA|chr2:67823873:67823979:-	0	-
#Deleted in new
chr2	67825488	67825562	ENSG00000237013.1|LINC01812|lncRNA|chr2:67825488:67825562:-	0	-
#Deleted in new
chr2	680043	680151	ENSG00000233296.1|AC092159.2|lncRNA|chr2:680043:680151:+	0	+
#Deleted in new
chr2	680080	680151	ENSG00000233296.1|AC092159.2|lncRNA|chr2:680080:680151:+	0	+
#Deleted in new
chr2	68053060	68053137	ENSG00000197223.11|C1D|pc|chr2:68053060:68053137:-	0	-
#Deleted in new
chr2	68053060	68053286	ENSG00000197223.11|C1D|pc|chr2:68053060:68053286:-	0	-
#Deleted in new
chr2	68110326	68110948	ENSG00000197223.11|C1D|pc|chr2:68110326:68110948:-	0	-
#Deleted in new
chr2	681255	682802	ENSG00000233296.1|AC092159.2|lncRNA|chr2:681255:682802:+	0	+
#Partially deleted in new
chr2	68174734	68176238	ENSG00000115946.7|PNO1|pc|chr2:68174734:68176238:+	0	+
#Deleted in new
chr2	68261188	68261230	ENSG00000273398.6|AC017083.4|pc|chr2:68261188:68261230:-	0	-
#Partially deleted in new
chr2	6828513	6828955	ENSG00000225964.5|NRIR|lncRNA|chr2:6828513:6828955:-	0	-
#Deleted in new
chr2	6828879	6828955	ENSG00000225964.5|NRIR|lncRNA|chr2:6828879:6828955:-	0	-
#Deleted in new
chr2	6829967	6830106	ENSG00000225964.5|NRIR|lncRNA|chr2:6829967:6830106:-	0	-
#Deleted in new
chr2	6833313	6833430	ENSG00000225964.5|NRIR|lncRNA|chr2:6833313:6833430:-	0	-
#Deleted in new
chr2	6833313	6833531	ENSG00000225964.5|NRIR|lncRNA|chr2:6833313:6833531:-	0	-
#Deleted in new
chr2	6840290	6840464	ENSG00000225964.5|NRIR|lncRNA|chr2:6840290:6840464:-	0	-
#Deleted in new
chr2	6840569	6840678	ENSG00000134326.11|CMPK2|pc|chr2:6840569:6840678:-	0	-
#Deleted in new
chr2	68529637	68529728	ENSG00000169621.9|APLF|pc|chr2:68529637:68529728:+	0	+
#Deleted in new
chr2	68587807	68587949	ENSG00000169621.9|APLF|pc|chr2:68587807:68587949:+	0	+
#Deleted in new
chr2	68612098	68612247	ENSG00000169621.9|APLF|pc|chr2:68612098:68612247:+	0	+
#Deleted in new
chr2	68630590	68630724	ENSG00000169621.9|APLF|pc|chr2:68630590:68630724:+	0	+
#Deleted in new
chr2	68630590	68630872	ENSG00000169621.9|APLF|pc|chr2:68630590:68630872:+	0	+
#Partially deleted in new
chr2	6866425	6866635	ENSG00000134326.11|CMPK2|pc|chr2:6866425:6866635:-	0	-
#Deleted in new
chr2	68679600	68679729	ENSG00000163219.11|ARHGAP25|pc|chr2:68679600:68679729:+	0	+
#Deleted in new
chr2	68679845	68680095	ENSG00000163219.11|ARHGAP25|pc|chr2:68679845:68680095:+	0	+
#Deleted in new
chr2	68679961	68680095	ENSG00000163219.11|ARHGAP25|pc|chr2:68679961:68680095:+	0	+
#Deleted in new
chr2	68757637	68757730	ENSG00000163219.11|ARHGAP25|pc|chr2:68757637:68757730:+	0	+
#Deleted in new
chr2	6876715	6877244	ENSG00000134321.11|RSAD2|pc|chr2:6876715:6877244:+	0	+
#Deleted in new
chr2	687798	688348	ENSG00000280360.1|AC092159.4|lncRNA|chr2:687798:688348:+	0	+
#Deleted in new
chr2	6878793	6879041	ENSG00000134321.11|RSAD2|pc|chr2:6878793:6879041:+	0	+
#Deleted in new
chr2	68832043	68832152	ENSG00000237576.1|LINC01888|lncRNA|chr2:68832043:68832152:+	0	+
#Deleted in new
chr2	68832815	68833050	ENSG00000228329.1|LINC01890|lncRNA|chr2:68832815:68833050:-	0	-
#Deleted in new
chr2	68835003	68835234	ENSG00000237576.1|LINC01888|lncRNA|chr2:68835003:68835234:+	0	+
#Deleted in new
chr2	68836410	68837192	ENSG00000228329.1|LINC01890|lncRNA|chr2:68836410:68837192:-	0	-
#Deleted in new
chr2	68837381	68837708	ENSG00000237576.1|LINC01888|lncRNA|chr2:68837381:68837708:+	0	+
#Deleted in new
chr2	68837381	68837724	ENSG00000237576.1|LINC01888|lncRNA|chr2:68837381:68837724:+	0	+
#Deleted in new
chr2	6905723	6906301	ENSG00000271947.1|AC017076.1|lncRNA|chr2:6905723:6906301:-	0	-
#Deleted in new
chr2	6913626	6913664	ENSG00000228203.6|RNF144A-AS1|lncRNA|chr2:6913626:6913664:-	0	-
#Partially deleted in new
chr2	6916849	6917224	ENSG00000228203.6|RNF144A-AS1|lncRNA|chr2:6916849:6917224:-	0	-
#Partially deleted in new
chr2	6916850	6917224	ENSG00000228203.6|RNF144A-AS1|lncRNA|chr2:6916850:6917224:-	0	-
#Partially deleted in new
chr2	6918401	6918709	ENSG00000228203.6|RNF144A-AS1|lncRNA|chr2:6918401:6918709:-	0	-
#Deleted in new
chr2	692082	692456	ENSG00000233970.1|AC092159.3|lncRNA|chr2:692082:692456:-	0	-
#Deleted in new
chr2	693038	693235	ENSG00000233970.1|AC092159.3|lncRNA|chr2:693038:693235:-	0	-
#Deleted in new
chr2	69371309	69371472	ENSG00000198380.12|GFPT1|pc|chr2:69371309:69371472:-	0	-
#Deleted in new
chr2	69399238	69399382	ENSG00000169599.12|NFU1|pc|chr2:69399238:69399382:-	0	-
#Deleted in new
chr2	69410802	69411140	ENSG00000169599.12|NFU1|pc|chr2:69410802:69411140:-	0	-
#Deleted in new
chr2	69416165	69416204	ENSG00000169599.12|NFU1|pc|chr2:69416165:69416204:-	0	-
#Deleted in new
chr2	69429903	69430021	ENSG00000169599.12|NFU1|pc|chr2:69429903:69430021:-	0	-
#Deleted in new
chr2	69461399	69461705	ENSG00000115977.18|AAK1|pc|chr2:69461399:69461705:-	0	-
#Deleted in new
chr2	69499868	69500301	ENSG00000115977.18|AAK1|pc|chr2:69499868:69500301:-	0	-
#Deleted in new
chr2	696540	696670	ENSG00000233296.1|AC092159.2|lncRNA|chr2:696540:696670:+	0	+
#Deleted in new
chr2	69700191	69700375	ENSG00000231024.1|AC092431.1|lncRNA|chr2:69700191:69700375:-	0	-
#Deleted in new
chr2	697146	697371	ENSG00000233296.1|AC092159.2|lncRNA|chr2:697146:697371:+	0	+
#Deleted in new
chr2	69720773	69720871	ENSG00000196975.15|ANXA4|pc|chr2:69720773:69720871:+	0	+
#Deleted in new
chr2	69720790	69720871	ENSG00000196975.15|ANXA4|pc|chr2:69720790:69720871:+	0	+
#Partially deleted in new
chr2	69807905	69810673	ENSG00000196975.15|ANXA4|pc|chr2:69807905:69810673:+	0	+
#Deleted in new
chr2	69811336	69811424	ENSG00000196975.15|ANXA4|pc|chr2:69811336:69811424:+	0	+
#Deleted in new
chr2	69897687	69897742	ENSG00000059728.10|MXD1|pc|chr2:69897687:69897742:+	0	+
#Deleted in new
chr2	69905265	69905575	ENSG00000124380.10|SNRNP27|pc|chr2:69905265:69905575:+	0	+
#Deleted in new
chr2	69968398	69968516	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69968398:69968516:-	0	-
#Deleted in new
chr2	69968398	69968520	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69968398:69968520:-	0	-
#Deleted in new
chr2	69970761	69970792	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69970761:69970792:-	0	-
#Partially deleted in new
chr2	69970761	69971282	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69970761:69971282:-	0	-
#Deleted in new
chr2	69970977	69971089	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69970977:69971089:-	0	-
#Deleted in new
chr2	69971012	69971089	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69971012:69971089:-	0	-
#Deleted in new
chr2	69975348	69975461	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69975348:69975461:-	0	-
#Deleted in new
chr2	69988445	69988505	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69988445:69988505:-	0	-
#Deleted in new
chr2	69988740	69988838	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69988740:69988838:-	0	-
#Deleted in new
chr2	69988741	69988838	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69988741:69988838:-	0	-
#Deleted in new
chr2	69993379	69994215	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69993379:69994215:-	0	-
#Deleted in new
chr2	69993862	69994218	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69993862:69994218:-	0	-
#Deleted in new
chr2	69993862	69994250	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69993862:69994250:-	0	-
#Deleted in new
chr2	69995311	69995381	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69995311:69995381:-	0	-
#Deleted in new
chr2	69996685	69996777	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996685:69996777:-	0	-
#Deleted in new
chr2	69996685	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996685:69996888:-	0	-
#Deleted in new
chr2	69996686	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996686:69996888:-	0	-
#Deleted in new
chr2	69996689	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996689:69996888:-	0	-
#Deleted in new
chr2	69996693	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996693:69996888:-	0	-
#Deleted in new
chr2	69996716	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996716:69996888:-	0	-
#Deleted in new
chr2	69996731	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996731:69996888:-	0	-
#Deleted in new
chr2	69996732	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996732:69996888:-	0	-
#Deleted in new
chr2	69996734	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996734:69996888:-	0	-
#Deleted in new
chr2	69996739	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996739:69996888:-	0	-
#Deleted in new
chr2	69996751	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996751:69996888:-	0	-
#Deleted in new
chr2	69996754	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996754:69996888:-	0	-
#Deleted in new
chr2	69996757	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996757:69996888:-	0	-
#Deleted in new
chr2	69996762	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996762:69996888:-	0	-
#Deleted in new
chr2	69996770	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996770:69996888:-	0	-
#Deleted in new
chr2	69996771	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996771:69996888:-	0	-
#Deleted in new
chr2	69996786	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996786:69996888:-	0	-
#Deleted in new
chr2	69996802	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996802:69996888:-	0	-
#Deleted in new
chr2	69996810	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996810:69996888:-	0	-
#Deleted in new
chr2	69996817	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996817:69996888:-	0	-
#Deleted in new
chr2	69996822	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996822:69996888:-	0	-
#Deleted in new
chr2	69996829	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996829:69996888:-	0	-
#Deleted in new
chr2	69996853	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996853:69996888:-	0	-
#Deleted in new
chr2	69996857	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996857:69996888:-	0	-
#Deleted in new
chr2	69996870	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996870:69996888:-	0	-
#Deleted in new
chr2	69996871	69996888	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:69996871:69996888:-	0	-
#Deleted in new
chr2	70000529	70000558	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70000529:70000558:-	0	-
#Partially deleted in new
chr2	70003045	70003315	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70003045:70003315:-	0	-
#Deleted in new
chr2	70014569	70014633	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70014569:70014633:-	0	-
#Deleted in new
chr2	70015447	70015509	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70015447:70015509:-	0	-
#Deleted in new
chr2	70015447	70015517	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70015447:70015517:-	0	-
#Deleted in new
chr2	70015447	70015526	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70015447:70015526:-	0	-
#Deleted in new
chr2	70015447	70015580	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70015447:70015580:-	0	-
#Deleted in new
chr2	70015539	70015580	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70015539:70015580:-	0	-
#Deleted in new
chr2	70015837	70016026	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70015837:70016026:-	0	-
#Deleted in new
chr2	70015837	70016150	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70015837:70016150:-	0	-
#Deleted in new
chr2	70015837	70016341	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70015837:70016341:-	0	-
#Deleted in new
chr2	70018005	70018131	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70018005:70018131:-	0	-
#Deleted in new
chr2	70018014	70018032	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70018014:70018032:-	0	-
#Deleted in new
chr2	70018014	70018081	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70018014:70018081:-	0	-
#Deleted in new
chr2	70018014	70018097	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70018014:70018097:-	0	-
#Deleted in new
chr2	70018014	70018131	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70018014:70018131:-	0	-
#Deleted in new
chr2	70018015	70018131	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70018015:70018131:-	0	-
#Deleted in new
chr2	70018066	70018131	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70018066:70018131:-	0	-
#Deleted in new
chr2	70018976	70019143	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70018976:70019143:-	0	-
#Deleted in new
chr2	70019137	70019177	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70019137:70019177:-	0	-
#Deleted in new
chr2	70019137	70019188	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70019137:70019188:-	0	-
#Deleted in new
chr2	70019137	70019203	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70019137:70019203:-	0	-
#Deleted in new
chr2	70028406	70028601	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70028406:70028601:-	0	-
#Partially deleted in new
chr2	70031365	70031931	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70031365:70031931:-	0	-
#Deleted in new
chr2	70031432	70031931	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70031432:70031931:-	0	-
#Deleted in new
chr2	70031566	70031931	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70031566:70031931:-	0	-
#Deleted in new
chr2	70031578	70031931	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70031578:70031931:-	0	-
#Deleted in new
chr2	70031628	70031931	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70031628:70031931:-	0	-
#Deleted in new
chr2	70031697	70031931	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70031697:70031931:-	0	-
#Deleted in new
chr2	70031733	70031931	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70031733:70031931:-	0	-
#Deleted in new
chr2	70031752	70031931	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70031752:70031931:-	0	-
#Deleted in new
chr2	70031840	70031931	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70031840:70031931:-	0	-
#Deleted in new
chr2	70031853	70031955	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70031853:70031955:-	0	-
#Deleted in new
chr2	70031884	70031931	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70031884:70031931:-	0	-
#Deleted in new
chr2	70032132	70032143	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70032132:70032143:-	0	-
#Partially deleted in new
chr2	70032132	70032255	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70032132:70032255:-	0	-
#Partially deleted in new
chr2	70032137	70032255	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70032137:70032255:-	0	-
#Partially deleted in new
chr2	70032138	70032255	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70032138:70032255:-	0	-
#Partially deleted in new
chr2	70032142	70032255	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70032142:70032255:-	0	-
#Deleted in new
chr2	70048686	70048957	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70048686:70048957:-	0	-
#Deleted in new
chr2	70048690	70048957	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70048690:70048957:-	0	-
#Deleted in new
chr2	70049044	70050252	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70049044:70050252:-	0	-
#Deleted in new
chr2	70049779	70050252	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70049779:70050252:-	0	-
#Deleted in new
chr2	70050047	70050252	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70050047:70050252:-	0	-
#Deleted in new
chr2	70050139	70050252	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70050139:70050252:-	0	-
#Deleted in new
chr2	70050139	70050268	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70050139:70050268:-	0	-
#Deleted in new
chr2	70050140	70050252	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70050140:70050252:-	0	-
#Deleted in new
chr2	70050143	70050252	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70050143:70050252:-	0	-
#Deleted in new
chr2	70050169	70050252	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70050169:70050252:-	0	-
#Deleted in new
chr2	70050599	70051305	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70050599:70051305:-	0	-
#Deleted in new
chr2	70050810	70051305	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70050810:70051305:-	0	-
#Deleted in new
chr2	70051016	70051305	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051016:70051305:-	0	-
#Deleted in new
chr2	70051027	70051305	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051027:70051305:-	0	-
#Deleted in new
chr2	70051044	70051305	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051044:70051305:-	0	-
#Deleted in new
chr2	70051202	70051278	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051202:70051278:-	0	-
#Deleted in new
chr2	70051202	70051303	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051202:70051303:-	0	-
#Deleted in new
chr2	70051202	70051304	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051202:70051304:-	0	-
#Deleted in new
chr2	70051202	70051305	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051202:70051305:-	0	-
#Deleted in new
chr2	70051204	70051305	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051204:70051305:-	0	-
#Deleted in new
chr2	70051209	70051305	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051209:70051305:-	0	-
#Deleted in new
chr2	70051213	70051305	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051213:70051305:-	0	-
#Deleted in new
chr2	70051249	70051305	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051249:70051305:-	0	-
#Deleted in new
chr2	70051275	70051305	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70051275:70051305:-	0	-
#Deleted in new
chr2	70055616	70055910	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70055616:70055910:-	0	-
#Deleted in new
chr2	70055655	70055730	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70055655:70055730:-	0	-
#Deleted in new
chr2	70055655	70055774	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70055655:70055774:-	0	-
#Deleted in new
chr2	70055655	70055910	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70055655:70055910:-	0	-
#Deleted in new
chr2	70055713	70055783	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70055713:70055783:-	0	-
#Deleted in new
chr2	70055713	70055823	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70055713:70055823:-	0	-
#Deleted in new
chr2	70055713	70055910	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70055713:70055910:-	0	-
#Deleted in new
chr2	70055735	70055910	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70055735:70055910:-	0	-
#Deleted in new
chr2	70055903	70055910	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70055903:70055910:-	0	-
#Deleted in new
chr2	70056191	70056601	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70056191:70056601:-	0	-
#Deleted in new
chr2	70059642	70059679	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70059642:70059679:-	0	-
#Deleted in new
chr2	70059642	70059680	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70059642:70059680:-	0	-
#Deleted in new
chr2	70059642	70059775	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70059642:70059775:-	0	-
#Deleted in new
chr2	70059642	70059961	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70059642:70059961:-	0	-
#Deleted in new
chr2	70059642	70059983	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70059642:70059983:-	0	-
#Deleted in new
chr2	70059642	70060106	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70059642:70060106:-	0	-
#Deleted in new
chr2	70063891	70063987	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70063891:70063987:-	0	-
#Partially deleted in new
chr2	70070289	70070802	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70070289:70070802:-	0	-
#Deleted in new
chr2	70071616	70071745	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70071616:70071745:-	0	-
#Partially deleted in new
chr2	70080917	70081229	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70080917:70081229:-	0	-
#Deleted in new
chr2	70081369	70081490	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70081369:70081490:-	0	-
#Deleted in new
chr2	70095903	70096100	ENSG00000233060.1|AC016700.3|lncRNA|chr2:70095903:70096100:+	0	+
#Deleted in new
chr2	70103189	70103220	ENSG00000179818.13|PCBP1-AS1|lncRNA|chr2:70103189:70103220:-	0	-
#Deleted in new
chr2	70124035	70124425	ENSG00000231327.1|LINC01816|lncRNA|chr2:70124035:70124425:-	0	-
#Deleted in new
chr2	70125045	70125317	ENSG00000231327.1|LINC01816|lncRNA|chr2:70125045:70125317:-	0	-
#Deleted in new
chr2	70182396	70182445	ENSG00000115998.7|C2orf42|pc|chr2:70182396:70182445:-	0	-
#Deleted in new
chr2	70257725	70257935	ENSG00000116005.11|PCYOX1|pc|chr2:70257725:70257935:+	0	+
#Deleted in new
chr2	70287264	70287371	ENSG00000143977.13|SNRPG|pc|chr2:70287264:70287371:-	0	-
#Deleted in new
chr2	70292674	70292776	ENSG00000143977.13|SNRPG|pc|chr2:70292674:70292776:-	0	-
#Partially deleted in new
chr2	70292674	70293438	ENSG00000143977.13|SNRPG|pc|chr2:70292674:70293438:-	0	-
#Deleted in new
chr2	70293152	70293224	ENSG00000143977.13|SNRPG|pc|chr2:70293152:70293224:-	0	-
#Deleted in new
chr2	70293290	70293448	ENSG00000143977.13|SNRPG|pc|chr2:70293290:70293448:-	0	-
#Deleted in new
chr2	70402933	70403136	ENSG00000229229.1|AC022201.1|lncRNA|chr2:70402933:70403136:+	0	+
#Deleted in new
chr2	70422402	70422678	ENSG00000229229.1|AC022201.1|lncRNA|chr2:70422402:70422678:+	0	+
#Deleted in new
chr2	70451728	70451760	ENSG00000163235.15|TGFA|pc|chr2:70451728:70451760:-	0	-
#Deleted in new
chr2	70467384	70467696	ENSG00000224606.1|TGFA-IT1|lncRNA|chr2:70467384:70467696:-	0	-
#Deleted in new
chr2	70468371	70468495	ENSG00000224606.1|TGFA-IT1|lncRNA|chr2:70468371:70468495:-	0	-
#Partially deleted in new
chr2	70607617	70607833	ENSG00000075340.22|ADD2|pc|chr2:70607617:70607833:-	0	-
#Deleted in new
chr2	7062726	7062914	ENSG00000223884.5|AC068481.1|lncRNA|chr2:7062726:7062914:-	0	-
#Deleted in new
chr2	70645085	70645361	ENSG00000075340.22|ADD2|pc|chr2:70645085:70645361:-	0	-
#Deleted in new
chr2	70648634	70648780	ENSG00000075340.22|ADD2|pc|chr2:70648634:70648780:-	0	-
#Deleted in new
chr2	70673240	70673326	ENSG00000075340.22|ADD2|pc|chr2:70673240:70673326:-	0	-
#Deleted in new
chr2	70673240	70673348	ENSG00000075340.22|ADD2|pc|chr2:70673240:70673348:-	0	-
#Deleted in new
chr2	70673310	70673326	ENSG00000075340.22|ADD2|pc|chr2:70673310:70673326:-	0	-
#Deleted in new
chr2	7068215	7068286	ENSG00000151692.14|RNF144A|pc|chr2:7068215:7068286:+	0	+
#Deleted in new
chr2	70741340	70741406	ENSG00000075340.22|ADD2|pc|chr2:70741340:70741406:-	0	-
#Deleted in new
chr2	7074503	7074716	ENSG00000223884.5|AC068481.1|lncRNA|chr2:7074503:7074716:-	0	-
#Deleted in new
chr2	70760605	70760701	ENSG00000075340.22|ADD2|pc|chr2:70760605:70760701:-	0	-
#Deleted in new
chr2	7076881	7077046	ENSG00000223884.5|AC068481.1|lncRNA|chr2:7076881:7077046:-	0	-
#Deleted in new
chr2	7077703	7077880	ENSG00000223884.5|AC068481.1|lncRNA|chr2:7077703:7077880:-	0	-
#Deleted in new
chr2	70777309	70777382	ENSG00000183733.6|FIGLA|pc|chr2:70777309:70777382:-	0	-
#Deleted in new
chr2	70777636	70777671	ENSG00000183733.6|FIGLA|pc|chr2:70777636:70777671:-	0	-
#Deleted in new
chr2	70887870	70888180	ENSG00000237751.2|LINC01143|lncRNA|chr2:70887870:70888180:+	0	+
#Deleted in new
chr2	70888285	70888348	ENSG00000237751.2|LINC01143|lncRNA|chr2:70888285:70888348:+	0	+
#Partially deleted in new
chr2	70889820	70889959	ENSG00000237751.2|LINC01143|lncRNA|chr2:70889820:70889959:+	0	+
#Deleted in new
chr2	70947533	70947671	ENSG00000239322.1|ATP6V1B1-AS1|lncRNA|chr2:70947533:70947671:-	0	-
#Deleted in new
chr2	70947539	70947671	ENSG00000258881.6|AC007040.2|pc|chr2:70947539:70947671:-	0	-
#Deleted in new
chr2	70948226	70948375	ENSG00000258881.6|AC007040.2|pc|chr2:70948226:70948375:-	0	-
#Deleted in new
chr2	70964069	70964111	ENSG00000116039.11|ATP6V1B1|pc|chr2:70964069:70964111:+	0	+
#Deleted in new
chr2	70978379	70978815	ENSG00000144031.11|ANKRD53|pc|chr2:70978379:70978815:+	0	+
#Deleted in new
chr2	70978451	70978815	ENSG00000144031.11|ANKRD53|pc|chr2:70978451:70978815:+	0	+
#Deleted in new
chr2	70978506	70978815	ENSG00000144031.11|ANKRD53|pc|chr2:70978506:70978815:+	0	+
#Deleted in new
chr2	70978611	70978815	ENSG00000144031.11|ANKRD53|pc|chr2:70978611:70978815:+	0	+
#Deleted in new
chr2	71002510	71002754	ENSG00000228384.4|AC007040.1|lncRNA|chr2:71002510:71002754:+	0	+
#Deleted in new
chr2	71002530	71002588	ENSG00000236469.1|AC007881.2|lncRNA|chr2:71002530:71002588:-	0	-
#Deleted in new
chr2	71004836	71005035	ENSG00000236469.1|AC007881.2|lncRNA|chr2:71004836:71005035:-	0	-
#Deleted in new
chr2	71066853	71066972	ENSG00000124357.12|NAGK|pc|chr2:71066853:71066972:+	0	+
#Deleted in new
chr2	71110762	71110858	ENSG00000124370.10|MCEE|pc|chr2:71110762:71110858:-	0	-
#Deleted in new
chr2	71116772	71116894	ENSG00000124370.10|MCEE|pc|chr2:71116772:71116894:-	0	-
#Deleted in new
chr2	71117518	71117587	ENSG00000124370.10|MCEE|pc|chr2:71117518:71117587:-	0	-
#Deleted in new
chr2	71118347	71118384	ENSG00000124370.10|MCEE|pc|chr2:71118347:71118384:-	0	-
#Deleted in new
chr2	71361644	71361695	ENSG00000075292.18|ZNF638|pc|chr2:71361644:71361695:+	0	+
#Deleted in new
chr2	71373937	71374061	ENSG00000281195.1|AC007878.1|lncRNA|chr2:71373937:71374061:+	0	+
#Deleted in new
chr2	71374829	71376320	ENSG00000281195.1|AC007878.1|lncRNA|chr2:71374829:71376320:+	0	+
#Deleted in new
chr2	71375309	71375335	ENSG00000075292.18|ZNF638|pc|chr2:71375309:71375335:+	0	+
#Deleted in new
chr2	71380837	71380903	ENSG00000075292.18|ZNF638|pc|chr2:71380837:71380903:+	0	+
#Deleted in new
chr2	71388622	71388723	ENSG00000075292.18|ZNF638|pc|chr2:71388622:71388723:+	0	+
#Deleted in new
chr2	71393393	71393645	ENSG00000075292.18|ZNF638|pc|chr2:71393393:71393645:+	0	+
#Deleted in new
chr2	71395246	71395670	ENSG00000075292.18|ZNF638|pc|chr2:71395246:71395670:+	0	+
#Deleted in new
chr2	71588704	71588773	ENSG00000135636.13|DYSF|pc|chr2:71588704:71588773:+	0	+
#Deleted in new
chr2	724965	725282	ENSG00000227713.1|AC092159.1|lncRNA|chr2:724965:725282:-	0	-
#Deleted in new
chr2	7260870	7261504	ENSG00000272002.1|AC010904.2|lncRNA|chr2:7260870:7261504:+	0	+
#Deleted in new
chr2	729305	729489	ENSG00000227713.1|AC092159.1|lncRNA|chr2:729305:729489:-	0	-
#Deleted in new
chr2	72967236	72967323	ENSG00000144040.12|SFXN5|pc|chr2:72967236:72967323:-	0	-
#Deleted in new
chr2	73041606	73041661	ENSG00000144040.12|SFXN5|pc|chr2:73041606:73041661:-	0	-
#Deleted in new
chr2	73049085	73049899	ENSG00000144040.12|SFXN5|pc|chr2:73049085:73049899:-	0	-
#Deleted in new
chr2	731019	731195	ENSG00000227713.1|AC092159.1|lncRNA|chr2:731019:731195:-	0	-
#Deleted in new
chr2	731019	731224	ENSG00000227713.1|AC092159.1|lncRNA|chr2:731019:731224:-	0	-
#Partially deleted in new
chr2	73113163	73115907	ENSG00000272702.1|AC010913.1|lncRNA|chr2:73113163:73115907:+	0	+
#Deleted in new
chr2	73113399	73113630	ENSG00000272702.1|AC010913.1|lncRNA|chr2:73113399:73113630:+	0	+
#Deleted in new
chr2	73156637	73156721	ENSG00000135631.16|RAB11FIP5|pc|chr2:73156637:73156721:-	0	-
#Deleted in new
chr2	73219951	73219992	ENSG00000135632.11|SMYD5|pc|chr2:73219951:73219992:+	0	+
#Partially deleted in new
chr2	73233444	73233513	ENSG00000135624.15|CCT7|pc|chr2:73233444:73233513:+	0	+
#Partially deleted in new
chr2	73233458	73233513	ENSG00000135624.15|CCT7|pc|chr2:73233458:73233513:+	0	+
#Deleted in new
chr2	73235549	73235645	ENSG00000135624.15|CCT7|pc|chr2:73235549:73235645:+	0	+
#Deleted in new
chr2	73271196	73271510	ENSG00000163013.11|FBXO41|pc|chr2:73271196:73271510:-	0	-
#Deleted in new
chr2	73456763	73457326	ENSG00000230002.2|ALMS1-IT1|lncRNA|chr2:73456763:73457326:+	0	+
#Deleted in new
chr2	73457940	73459484	ENSG00000230002.2|ALMS1-IT1|lncRNA|chr2:73457940:73459484:+	0	+
#Deleted in new
chr2	73558971	73559142	ENSG00000116127.17|ALMS1|pc|chr2:73558971:73559142:+	0	+
#Deleted in new
chr2	73603930	73603991	ENSG00000116127.17|ALMS1|pc|chr2:73603930:73603991:+	0	+
#Partially deleted in new
chr2	73610436	73610793	ENSG00000116127.17|ALMS1|pc|chr2:73610436:73610793:+	0	+
#Deleted in new
chr2	73729103	73729305	ENSG00000144034.14|TPRKB|pc|chr2:73729103:73729305:-	0	-
#Deleted in new
chr2	73729168	73729305	ENSG00000144034.14|TPRKB|pc|chr2:73729168:73729305:-	0	-
#Deleted in new
chr2	73729233	73729305	ENSG00000144034.14|TPRKB|pc|chr2:73729233:73729305:-	0	-
#Deleted in new
chr2	73732583	73732700	ENSG00000144034.14|TPRKB|pc|chr2:73732583:73732700:-	0	-
#Deleted in new
chr2	73750255	73750786	ENSG00000273245.1|AC092653.1|lncRNA|chr2:73750255:73750786:-	0	-
#Deleted in new
chr2	73761268	73761781	ENSG00000280037.1|AC092653.2|lncRNA|chr2:73761268:73761781:-	0	-
#Deleted in new
chr2	73779470	73779582	ENSG00000144048.10|DUSP11|pc|chr2:73779470:73779582:-	0	-
#Duplicated in new
chr2	73862202	73862304	ENSG00000124356.15|STAMBP|pc|chr2:73862202:73862304:+	0	+
#Split in new
chr2	73862202	73867168	ENSG00000124356.15|STAMBP|pc|chr2:73862202:73867168:+	0	+
#Split in new
chr2	73862202	73867172	ENSG00000124356.15|STAMBP|pc|chr2:73862202:73867172:+	0	+
#Deleted in new
chr2	73873351	73873633	ENSG00000124356.15|STAMBP|pc|chr2:73873351:73873633:+	0	+
#Deleted in new
chr2	73873351	73873659	ENSG00000124356.15|STAMBP|pc|chr2:73873351:73873659:+	0	+
#Partially deleted in new
chr2	73932597	73932683	ENSG00000114956.19|DGUOK|pc|chr2:73932597:73932683:+	0	+
#Deleted in new
chr2	73947641	73947935	ENSG00000237883.1|DGUOK-AS1|lncRNA|chr2:73947641:73947935:-	0	-
#Deleted in new
chr2	739587	740164	ENSG00000272342.1|LINC01115|lncRNA|chr2:739587:740164:-	0	-
#Deleted in new
chr2	74130582	74130922	ENSG00000217702.2|AC073263.1|lncRNA|chr2:74130582:74130922:+	0	+
#Partially deleted in new
chr2	74134471	74135395	ENSG00000217702.2|AC073263.1|lncRNA|chr2:74134471:74135395:+	0	+
#Partially deleted in new
chr2	74148008	74148478	ENSG00000225439.2|BOLA3-AS1|lncRNA|chr2:74148008:74148478:+	0	+
#Partially deleted in new
chr2	74148038	74148478	ENSG00000225439.2|BOLA3-AS1|lncRNA|chr2:74148038:74148478:+	0	+
#Deleted in new
chr2	74148349	74148478	ENSG00000225439.2|BOLA3-AS1|lncRNA|chr2:74148349:74148478:+	0	+
#Deleted in new
chr2	74148697	74149988	ENSG00000225439.2|BOLA3-AS1|lncRNA|chr2:74148697:74149988:+	0	+
#Deleted in new
chr2	74148697	74150061	ENSG00000225439.2|BOLA3-AS1|lncRNA|chr2:74148697:74150061:+	0	+
#Deleted in new
chr2	74148893	74149054	ENSG00000225439.2|BOLA3-AS1|lncRNA|chr2:74148893:74149054:+	0	+
#Deleted in new
chr2	74178007	74178281	ENSG00000114978.17|MOB1A|pc|chr2:74178007:74178281:-	0	-
#Deleted in new
chr2	74178114	74178281	ENSG00000114978.17|MOB1A|pc|chr2:74178114:74178281:-	0	-
#Deleted in new
chr2	74178114	74178314	ENSG00000114978.17|MOB1A|pc|chr2:74178114:74178314:-	0	-
#Deleted in new
chr2	74191387	74192245	ENSG00000279201.1|AC073263.3|lncRNA|chr2:74191387:74192245:+	0	+
#Deleted in new
chr2	74191389	74191500	ENSG00000279201.1|AC073263.3|lncRNA|chr2:74191389:74191500:+	0	+
#Partially deleted in new
chr2	74196697	74198560	ENSG00000279070.2|AC073263.2|lncRNA|chr2:74196697:74198560:-	0	-
#Deleted in new
chr2	741976	742109	ENSG00000231173.1|AC116609.2|lncRNA|chr2:741976:742109:+	0	+
#Deleted in new
chr2	7421684	7421843	ENSG00000229727.6|AC013460.1|lncRNA|chr2:7421684:7421843:+	0	+
#Split in new
chr2	7422572	7423045	ENSG00000229727.6|AC013460.1|lncRNA|chr2:7422572:7423045:+	0	+
#Deleted in new
chr2	742487	742912	ENSG00000223751.1|AC116609.1|lncRNA|chr2:742487:742912:+	0	+
#Deleted in new
chr2	7429922	7430293	ENSG00000229727.6|AC013460.1|lncRNA|chr2:7429922:7430293:+	0	+
#Deleted in new
chr2	7430179	7430293	ENSG00000229727.6|AC013460.1|lncRNA|chr2:7430179:7430293:+	0	+
#Deleted in new
chr2	74334026	74334139	ENSG00000188687.17|SLC4A5|pc|chr2:74334026:74334139:-	0	-
#Deleted in new
chr2	74334026	74334177	ENSG00000188687.17|SLC4A5|pc|chr2:74334026:74334177:-	0	-
#Deleted in new
chr2	74334026	74334177	ENSG00000264324.1|AC006030.1|pc|chr2:74334026:74334177:-	0	-
#Deleted in new
chr2	74334026	74334193	ENSG00000188687.17|SLC4A5|pc|chr2:74334026:74334193:-	0	-
#Deleted in new
chr2	74338854	74338903	ENSG00000188687.17|SLC4A5|pc|chr2:74338854:74338903:-	0	-
#Deleted in new
chr2	74338854	74338903	ENSG00000264324.1|AC006030.1|pc|chr2:74338854:74338903:-	0	-
#Deleted in new
chr2	74338854	74339712	ENSG00000188687.17|SLC4A5|pc|chr2:74338854:74339712:-	0	-
#Partially deleted in new
chr2	7436004	7436097	ENSG00000229727.6|AC013460.1|lncRNA|chr2:7436004:7436097:+	0	+
#Partially deleted in new
chr2	74391988	74392896	ENSG00000237737.5|DCTN1-AS1|lncRNA|chr2:74391988:74392896:+	0	+
#Partially deleted in new
chr2	74391993	74393882	ENSG00000237737.5|DCTN1-AS1|lncRNA|chr2:74391993:74393882:+	0	+
#Deleted in new
chr2	74393835	74398701	ENSG00000159239.13|AC005041.1|pc|chr2:74393835:74398701:-	0	-
#Deleted in new
chr2	74408106	74408213	ENSG00000159239.13|AC005041.1|pc|chr2:74408106:74408213:-	0	-
#Deleted in new
chr2	74412647	74412736	ENSG00000159239.13|AC005041.1|pc|chr2:74412647:74412736:-	0	-
#Deleted in new
chr2	7445879	7445890	ENSG00000229727.6|AC013460.1|lncRNA|chr2:7445879:7445890:+	0	+
#Deleted in new
chr2	7445879	7445956	ENSG00000229727.6|AC013460.1|lncRNA|chr2:7445879:7445956:+	0	+
#Partially deleted in new
chr2	74483067	74483408	ENSG00000135637.13|CCDC142|pc|chr2:74483067:74483408:-	0	-
#Deleted in new
chr2	74483321	74483410	ENSG00000115282.19|TTC31|pc|chr2:74483321:74483410:+	0	+
#Partially deleted in new
chr2	74483321	74483563	ENSG00000115282.19|TTC31|pc|chr2:74483321:74483563:+	0	+
#Deleted in new
chr2	74490024	74490127	ENSG00000115282.19|TTC31|pc|chr2:74490024:74490127:+	0	+
#Deleted in new
chr2	74490024	74490473	ENSG00000115282.19|TTC31|pc|chr2:74490024:74490473:+	0	+
#Deleted in new
chr2	74490243	74490473	ENSG00000115282.19|TTC31|pc|chr2:74490243:74490473:+	0	+
#Deleted in new
chr2	74491127	74491184	ENSG00000115282.19|TTC31|pc|chr2:74491127:74491184:+	0	+
#Deleted in new
chr2	74491294	74491375	ENSG00000115282.19|TTC31|pc|chr2:74491294:74491375:+	0	+
#Deleted in new
chr2	74491480	74491558	ENSG00000115282.19|TTC31|pc|chr2:74491480:74491558:+	0	+
#Deleted in new
chr2	74491480	74491628	ENSG00000115282.19|TTC31|pc|chr2:74491480:74491628:+	0	+
#Deleted in new
chr2	74491480	74491649	ENSG00000115282.19|TTC31|pc|chr2:74491480:74491649:+	0	+
#Deleted in new
chr2	74491480	74491666	ENSG00000115282.19|TTC31|pc|chr2:74491480:74491666:+	0	+
#Deleted in new
chr2	74491480	74491672	ENSG00000115282.19|TTC31|pc|chr2:74491480:74491672:+	0	+
#Deleted in new
chr2	74491480	74492445	ENSG00000115282.19|TTC31|pc|chr2:74491480:74492445:+	0	+
#Deleted in new
chr2	74491569	74491666	ENSG00000115282.19|TTC31|pc|chr2:74491569:74491666:+	0	+
#Deleted in new
chr2	74491583	74491672	ENSG00000115282.19|TTC31|pc|chr2:74491583:74491672:+	0	+
#Deleted in new
chr2	74491943	74492055	ENSG00000115282.19|TTC31|pc|chr2:74491943:74492055:+	0	+
#Deleted in new
chr2	74492003	74492055	ENSG00000115282.19|TTC31|pc|chr2:74492003:74492055:+	0	+
#Partially deleted in new
chr2	74492003	74494559	ENSG00000115282.19|TTC31|pc|chr2:74492003:74494559:+	0	+
#Deleted in new
chr2	74492138	74492229	ENSG00000115282.19|TTC31|pc|chr2:74492138:74492229:+	0	+
#Deleted in new
chr2	74492138	74492445	ENSG00000115282.19|TTC31|pc|chr2:74492138:74492445:+	0	+
#Deleted in new
chr2	74492138	74493083	ENSG00000115282.19|TTC31|pc|chr2:74492138:74493083:+	0	+
#Partially deleted in new
chr2	74492138	74494559	ENSG00000115282.19|TTC31|pc|chr2:74492138:74494559:+	0	+
#Deleted in new
chr2	74492303	74492445	ENSG00000115282.19|TTC31|pc|chr2:74492303:74492445:+	0	+
#Deleted in new
chr2	74492645	74492747	ENSG00000115282.19|TTC31|pc|chr2:74492645:74492747:+	0	+
#Deleted in new
chr2	74492645	74492813	ENSG00000115282.19|TTC31|pc|chr2:74492645:74492813:+	0	+
#Deleted in new
chr2	74492675	74492747	ENSG00000115282.19|TTC31|pc|chr2:74492675:74492747:+	0	+
#Deleted in new
chr2	74492921	74493083	ENSG00000115282.19|TTC31|pc|chr2:74492921:74493083:+	0	+
#Deleted in new
chr2	74492924	74493311	ENSG00000115282.19|TTC31|pc|chr2:74492924:74493311:+	0	+
#Deleted in new
chr2	74492966	74493083	ENSG00000115282.19|TTC31|pc|chr2:74492966:74493083:+	0	+
#Deleted in new
chr2	7449883	7449914	ENSG00000229727.6|AC013460.1|lncRNA|chr2:7449883:7449914:+	0	+
#Partially deleted in new
chr2	74502594	74503407	ENSG00000257702.3|LBX2-AS1|lncRNA|chr2:74502594:74503407:+	0	+
#Partially deleted in new
chr2	74502594	74504677	ENSG00000257702.3|LBX2-AS1|lncRNA|chr2:74502594:74504677:+	0	+
#Partially deleted in new
chr2	74502666	74503316	ENSG00000179528.15|LBX2|pc|chr2:74502666:74503316:-	0	-
#Deleted in new
chr2	74502835	74502984	ENSG00000179528.15|LBX2|pc|chr2:74502835:74502984:-	0	-
#Partially deleted in new
chr2	74502835	74503216	ENSG00000179528.15|LBX2|pc|chr2:74502835:74503216:-	0	-
#Partially deleted in new
chr2	74503639	74504678	ENSG00000257702.3|LBX2-AS1|lncRNA|chr2:74503639:74504678:+	0	+
#Partially deleted in new
chr2	74535288	74535454	ENSG00000115318.11|LOXL3|pc|chr2:74535288:74535454:-	0	-
#Partially deleted in new
chr2	74535291	74535454	ENSG00000115318.11|LOXL3|pc|chr2:74535291:74535454:-	0	-
#Deleted in new
chr2	74559697	74559709	ENSG00000159374.17|M1AP|pc|chr2:74559697:74559709:-	0	-
#Deleted in new
chr2	74647972	74648037	ENSG00000159374.17|M1AP|pc|chr2:74647972:74648037:-	0	-
#Deleted in new
chr2	747657	747767	ENSG00000223751.1|AC116609.1|lncRNA|chr2:747657:747767:+	0	+
#Deleted in new
chr2	74918147	74918459	ENSG00000204792.2|LINC01291|lncRNA|chr2:74918147:74918459:+	0	+
#Deleted in new
chr2	74924815	74924846	ENSG00000236209.1|AC104135.1|lncRNA|chr2:74924815:74924846:-	0	-
#Partially deleted in new
chr2	74928238	74931536	ENSG00000204792.2|LINC01291|lncRNA|chr2:74928238:74931536:+	0	+
#Deleted in new
chr2	74931417	74931536	ENSG00000204792.2|LINC01291|lncRNA|chr2:74931417:74931536:+	0	+
#Deleted in new
chr2	74931427	74931536	ENSG00000204792.2|LINC01291|lncRNA|chr2:74931427:74931536:+	0	+
#Deleted in new
chr2	74932198	74932289	ENSG00000204792.2|LINC01291|lncRNA|chr2:74932198:74932289:+	0	+
#Deleted in new
chr2	74932660	74932790	ENSG00000204792.2|LINC01291|lncRNA|chr2:74932660:74932790:+	0	+
#Deleted in new
chr2	74932660	74932794	ENSG00000204792.2|LINC01291|lncRNA|chr2:74932660:74932794:+	0	+
#Deleted in new
chr2	74932660	74933024	ENSG00000204792.2|LINC01291|lncRNA|chr2:74932660:74933024:+	0	+
#Deleted in new
chr2	74938307	74938418	ENSG00000204792.2|LINC01291|lncRNA|chr2:74938307:74938418:+	0	+
#Deleted in new
chr2	749733	749856	ENSG00000231173.1|AC116609.2|lncRNA|chr2:749733:749856:+	0	+
#Deleted in new
chr2	75156203	75156315	ENSG00000270571.2|AC007681.1|lncRNA|chr2:75156203:75156315:+	0	+
#Deleted in new
chr2	75524067	75524151	ENSG00000231172.2|AC007099.1|lncRNA|chr2:75524067:75524151:+	0	+
#Deleted in new
chr2	75541737	75542706	ENSG00000231172.2|AC007099.1|lncRNA|chr2:75541737:75542706:+	0	+
#Deleted in new
chr2	75569475	75569698	ENSG00000115363.13|EVA1A|pc|chr2:75569475:75569698:-	0	-
#Deleted in new
chr2	75569475	75569722	ENSG00000115363.13|EVA1A|pc|chr2:75569475:75569722:-	0	-
#Deleted in new
chr2	75660461	75662208	ENSG00000270696.1|AC005034.3|lncRNA|chr2:75660461:75662208:+	0	+
#Partially deleted in new
chr2	75662705	75664783	ENSG00000005436.13|GCFC2|pc|chr2:75662705:75664783:-	0	-
#Partially deleted in new
chr2	75662707	75664783	ENSG00000005436.13|GCFC2|pc|chr2:75662707:75664783:-	0	-
#Deleted in new
chr2	75679774	75679852	ENSG00000115364.13|MRPL19|pc|chr2:75679774:75679852:+	0	+
#Deleted in new
chr2	75719119	75720018	ENSG00000270996.1|AC005034.4|lncRNA|chr2:75719119:75720018:+	0	+
#Deleted in new
chr2	76987405	76987494	ENSG00000234653.1|AC079117.1|lncRNA|chr2:76987405:76987494:+	0	+
#Deleted in new
chr2	76989820	76989926	ENSG00000234653.1|AC079117.1|lncRNA|chr2:76989820:76989926:+	0	+
#Deleted in new
chr2	7730515	7730705	ENSG00000235576.1|LINC01871|lncRNA|chr2:7730515:7730705:+	0	+
#Deleted in new
chr2	77552565	77552656	ENSG00000176204.13|LRRTM4|pc|chr2:77552565:77552656:-	0	-
#Deleted in new
chr2	77592814	77593196	ENSG00000176204.13|LRRTM4|pc|chr2:77592814:77593196:-	0	-
#Deleted in new
chr2	77592814	77593319	ENSG00000176204.13|LRRTM4|pc|chr2:77592814:77593319:-	0	-
#Deleted in new
chr2	77652412	77652609	ENSG00000227088.1|AC084149.1|lncRNA|chr2:77652412:77652609:-	0	-
#Deleted in new
chr2	77654581	77654668	ENSG00000227088.1|AC084149.1|lncRNA|chr2:77654581:77654668:-	0	-
#Partially deleted in new
chr2	77672214	77672269	ENSG00000230968.1|AC084149.2|lncRNA|chr2:77672214:77672269:+	0	+
#Deleted in new
chr2	77917236	77917404	ENSG00000233605.2|LINC01851|lncRNA|chr2:77917236:77917404:+	0	+
#Partially deleted in new
chr2	77917702	77918011	ENSG00000233605.2|LINC01851|lncRNA|chr2:77917702:77918011:+	0	+
#Deleted in new
chr2	780350	780591	ENSG00000237667.5|LINC01115|lncRNA|chr2:780350:780591:-	0	-
#Deleted in new
chr2	78088729	78088791	ENSG00000229494.1|AC012494.1|lncRNA|chr2:78088729:78088791:+	0	+
#Deleted in new
chr2	78094636	78094776	ENSG00000229494.1|AC012494.1|lncRNA|chr2:78094636:78094776:+	0	+
#Deleted in new
chr2	78107039	78107251	ENSG00000229494.1|AC012494.1|lncRNA|chr2:78107039:78107251:+	0	+
#Deleted in new
chr2	78111899	78112130	ENSG00000229494.1|AC012494.1|lncRNA|chr2:78111899:78112130:+	0	+
#Deleted in new
chr2	78127498	78127806	ENSG00000229494.1|AC012494.1|lncRNA|chr2:78127498:78127806:+	0	+
#Deleted in new
chr2	7886769	7887062	ENSG00000226506.5|AC007463.1|lncRNA|chr2:7886769:7887062:-	0	-
#Deleted in new
chr2	7889423	7889559	ENSG00000226506.5|AC007463.1|lncRNA|chr2:7889423:7889559:-	0	-
#Deleted in new
chr2	7889485	7889559	ENSG00000226506.5|AC007463.1|lncRNA|chr2:7889485:7889559:-	0	-
#Deleted in new
chr2	7896064	7896172	ENSG00000226506.5|AC007463.1|lncRNA|chr2:7896064:7896172:-	0	-
#Deleted in new
chr2	7897608	7897750	ENSG00000226506.5|AC007463.1|lncRNA|chr2:7897608:7897750:-	0	-
#Deleted in new
chr2	7897608	7897782	ENSG00000226506.5|AC007463.1|lncRNA|chr2:7897608:7897782:-	0	-
#Deleted in new
chr2	79184656	79184708	ENSG00000224879.1|AC011754.1|lncRNA|chr2:79184656:79184708:+	0	+
#Deleted in new
chr2	79185230	79185431	ENSG00000066032.18|CTNNA2|pc|chr2:79185230:79185431:+	0	+
#Deleted in new
chr2	79185237	79185523	ENSG00000224879.1|AC011754.1|lncRNA|chr2:79185237:79185523:+	0	+
#Deleted in new
chr2	79197958	79198076	ENSG00000066032.18|CTNNA2|pc|chr2:79197958:79198076:+	0	+
#Deleted in new
chr2	7922424	7924348	ENSG00000235665.5|LINC00298|lncRNA|chr2:7922424:7924348:-	0	-
#Deleted in new
chr2	7924153	7924348	ENSG00000235665.5|LINC00298|lncRNA|chr2:7924153:7924348:-	0	-
#Deleted in new
chr2	79319711	79319724	ENSG00000066032.18|CTNNA2|pc|chr2:79319711:79319724:+	0	+
#Deleted in new
chr2	79319711	79319893	ENSG00000066032.18|CTNNA2|pc|chr2:79319711:79319893:+	0	+
#Deleted in new
chr2	79319809	79319905	ENSG00000066032.18|CTNNA2|pc|chr2:79319809:79319905:+	0	+
#Deleted in new
chr2	79319972	79320008	ENSG00000066032.18|CTNNA2|pc|chr2:79319972:79320008:+	0	+
#Deleted in new
chr2	79493715	79493896	ENSG00000229385.1|AC010975.1|lncRNA|chr2:79493715:79493896:-	0	-
#Deleted in new
chr2	79498069	79498155	ENSG00000229385.1|AC010975.1|lncRNA|chr2:79498069:79498155:-	0	-
#Deleted in new
chr2	79498924	79499077	ENSG00000229385.1|AC010975.1|lncRNA|chr2:79498924:79499077:-	0	-
#Deleted in new
chr2	79499176	79499242	ENSG00000229385.1|AC010975.1|lncRNA|chr2:79499176:79499242:-	0	-
#Deleted in new
chr2	79500661	79500844	ENSG00000229385.1|AC010975.1|lncRNA|chr2:79500661:79500844:-	0	-
#Deleted in new
chr2	7968144	7968279	ENSG00000235665.5|LINC00298|lncRNA|chr2:7968144:7968279:-	0	-
#Partially deleted in new
chr2	7976708	7976846	ENSG00000235665.5|LINC00298|lncRNA|chr2:7976708:7976846:-	0	-
#Deleted in new
chr2	7979259	7979326	ENSG00000235665.5|LINC00298|lncRNA|chr2:7979259:7979326:-	0	-
#Deleted in new
chr2	7979271	7979310	ENSG00000235665.5|LINC00298|lncRNA|chr2:7979271:7979310:-	0	-
#Deleted in new
chr2	80030501	80030551	ENSG00000224731.1|AC016716.2|lncRNA|chr2:80030501:80030551:-	0	-
#Partially deleted in new
chr2	8007770	8008759	ENSG00000236790.5|LINC00299|lncRNA|chr2:8007770:8008759:-	0	-
#Deleted in new
chr2	80328274	80328349	ENSG00000066032.18|CTNNA2|pc|chr2:80328274:80328349:+	0	+
#Deleted in new
chr2	80378686	80378781	ENSG00000066032.18|CTNNA2|pc|chr2:80378686:80378781:+	0	+
#Deleted in new
chr2	80575275	80575285	ENSG00000237031.7|AC008067.1|lncRNA|chr2:80575275:80575285:-	0	-
#Deleted in new
chr2	80601622	80602060	ENSG00000237031.7|AC008067.1|lncRNA|chr2:80601622:80602060:-	0	-
#Deleted in new
chr2	806028	806249	ENSG00000237667.5|LINC01115|lncRNA|chr2:806028:806249:-	0	-
#Deleted in new
chr2	8060347	8060405	ENSG00000236790.5|LINC00299|lncRNA|chr2:8060347:8060405:-	0	-
#Deleted in new
chr2	80703631	80703694	ENSG00000230975.1|AC012355.1|lncRNA|chr2:80703631:80703694:-	0	-
#Deleted in new
chr2	81461357	81461440	ENSG00000235519.2|LINC01815|lncRNA|chr2:81461357:81461440:-	0	-
#Deleted in new
chr2	81461361	81461440	ENSG00000235519.2|LINC01815|lncRNA|chr2:81461361:81461440:-	0	-
#Deleted in new
chr2	81983271	81983306	ENSG00000231781.1|AC079896.1|lncRNA|chr2:81983271:81983306:-	0	-
#Deleted in new
chr2	81983388	81983435	ENSG00000231781.1|AC079896.1|lncRNA|chr2:81983388:81983435:-	0	-
#Deleted in new
chr2	81986195	81986392	ENSG00000231781.1|AC079896.1|lncRNA|chr2:81986195:81986392:-	0	-
#Deleted in new
chr2	81986509	81986579	ENSG00000231781.1|AC079896.1|lncRNA|chr2:81986509:81986579:-	0	-
#Deleted in new
chr2	82005561	82005700	ENSG00000231781.1|AC079896.1|lncRNA|chr2:82005561:82005700:-	0	-
#Deleted in new
chr2	8207142	8208040	ENSG00000236790.5|LINC00299|lncRNA|chr2:8207142:8208040:-	0	-
#Deleted in new
chr2	8243564	8243641	ENSG00000236790.5|LINC00299|lncRNA|chr2:8243564:8243641:-	0	-
#Deleted in new
chr2	82479127	82479308	ENSG00000237498.2|AC010105.1|lncRNA|chr2:82479127:82479308:-	0	-
#Deleted in new
chr2	82521959	82522028	ENSG00000237498.2|AC010105.1|lncRNA|chr2:82521959:82522028:-	0	-
#Deleted in new
chr2	82538576	82538711	ENSG00000237498.2|AC010105.1|lncRNA|chr2:82538576:82538711:-	0	-
#Deleted in new
chr2	8287337	8287558	ENSG00000236790.5|LINC00299|lncRNA|chr2:8287337:8287558:-	0	-
#Deleted in new
chr2	8294611	8294686	ENSG00000236790.5|LINC00299|lncRNA|chr2:8294611:8294686:-	0	-
#Deleted in new
chr2	8296839	8296943	ENSG00000236790.5|LINC00299|lncRNA|chr2:8296839:8296943:-	0	-
#Deleted in new
chr2	8296839	8297233	ENSG00000236790.5|LINC00299|lncRNA|chr2:8296839:8297233:-	0	-
#Deleted in new
chr2	8299675	8299793	ENSG00000236790.5|LINC00299|lncRNA|chr2:8299675:8299793:-	0	-
#Deleted in new
chr2	8324541	8324630	ENSG00000236790.5|LINC00299|lncRNA|chr2:8324541:8324630:-	0	-
#Deleted in new
chr2	8324541	8324684	ENSG00000236790.5|LINC00299|lncRNA|chr2:8324541:8324684:-	0	-
#Partially deleted in new
chr2	8328233	8328419	ENSG00000236790.5|LINC00299|lncRNA|chr2:8328233:8328419:-	0	-
#Deleted in new
chr2	8362177	8362275	ENSG00000236790.5|LINC00299|lncRNA|chr2:8362177:8362275:-	0	-
#Deleted in new
chr2	8383094	8383190	ENSG00000236790.5|LINC00299|lncRNA|chr2:8383094:8383190:-	0	-
#Deleted in new
chr2	8383476	8383621	ENSG00000236790.5|LINC00299|lncRNA|chr2:8383476:8383621:-	0	-
#Deleted in new
chr2	84315107	84315259	ENSG00000228272.1|AC106874.1|lncRNA|chr2:84315107:84315259:+	0	+
#Deleted in new
chr2	84350356	84350774	ENSG00000228272.1|AC106874.1|lncRNA|chr2:84350356:84350774:+	0	+
#Deleted in new
chr2	84832387	84835504	ENSG00000186854.10|TRABD2A|pc|chr2:84832387:84835504:-	0	-
#Deleted in new
chr2	84835918	84838241	ENSG00000186854.10|TRABD2A|pc|chr2:84835918:84838241:-	0	-
#Deleted in new
chr2	84837789	84838241	ENSG00000186854.10|TRABD2A|pc|chr2:84837789:84838241:-	0	-
#Deleted in new
chr2	84843569	84843984	ENSG00000186854.10|TRABD2A|pc|chr2:84843569:84843984:-	0	-
#Deleted in new
chr2	84849423	84849556	ENSG00000186854.10|TRABD2A|pc|chr2:84849423:84849556:-	0	-
#Duplicated in new
chr2	84870224	84870785	ENSG00000186854.10|TRABD2A|pc|chr2:84870224:84870785:-	0	-
#Deleted in new
chr2	84880931	84881150	ENSG00000186854.10|TRABD2A|pc|chr2:84880931:84881150:-	0	-
#Deleted in new
chr2	84880931	84881245	ENSG00000186854.10|TRABD2A|pc|chr2:84880931:84881245:-	0	-
#Deleted in new
chr2	84881861	84881975	ENSG00000186854.10|TRABD2A|pc|chr2:84881861:84881975:-	0	-
#Deleted in new
chr2	84901642	84901878	ENSG00000186854.10|TRABD2A|pc|chr2:84901642:84901878:-	0	-
#Deleted in new
chr2	85013935	85014053	ENSG00000176407.17|KCMF1|pc|chr2:85013935:85014053:+	0	+
#Deleted in new
chr2	85064107	85064679	ENSG00000260840.1|LINC01964|lncRNA|chr2:85064107:85064679:-	0	-
#Deleted in new
chr2	85166919	85167373	ENSG00000152284.4|TCF7L1|pc|chr2:85166919:85167373:+	0	+
#Deleted in new
chr2	85187185	85187253	ENSG00000231134.1|TCF7L1-IT1|lncRNA|chr2:85187185:85187253:+	0	+
#Deleted in new
chr2	85217019	85217206	ENSG00000152284.4|TCF7L1|pc|chr2:85217019:85217206:+	0	+
#Deleted in new
chr2	85232959	85233074	ENSG00000152284.4|TCF7L1|pc|chr2:85232959:85233074:+	0	+
#Deleted in new
chr2	85233797	85233888	ENSG00000152284.4|TCF7L1|pc|chr2:85233797:85233888:+	0	+
#Deleted in new
chr2	85322745	85322799	ENSG00000152291.13|TGOLN2|pc|chr2:85322745:85322799:-	0	-
#Deleted in new
chr2	85356601	85356667	ENSG00000115459.17|ELMOD3|pc|chr2:85356601:85356667:+	0	+
#Partially deleted in new
chr2	85371085	85372909	ENSG00000115459.17|ELMOD3|pc|chr2:85371085:85372909:+	0	+
#Deleted in new
chr2	85376881	85376916	ENSG00000115459.17|ELMOD3|pc|chr2:85376881:85376916:+	0	+
#Deleted in new
chr2	85387073	85387146	ENSG00000273196.1|AC062037.2|lncRNA|chr2:85387073:85387146:-	0	-
#Deleted in new
chr2	85387097	85387199	ENSG00000115459.17|ELMOD3|pc|chr2:85387097:85387199:+	0	+
#Deleted in new
chr2	85387097	85387225	ENSG00000115459.17|ELMOD3|pc|chr2:85387097:85387225:+	0	+
#Deleted in new
chr2	853978	854215	ENSG00000237667.5|LINC01115|lncRNA|chr2:853978:854215:-	0	-
#Deleted in new
chr2	85413832	85413974	ENSG00000042493.15|CAPG|pc|chr2:85413832:85413974:-	0	-
#Deleted in new
chr2	85413976	85414042	ENSG00000042493.15|CAPG|pc|chr2:85413976:85414042:-	0	-
#Deleted in new
chr2	85413983	85414018	ENSG00000042493.15|CAPG|pc|chr2:85413983:85414018:-	0	-
#Deleted in new
chr2	85413983	85414039	ENSG00000042493.15|CAPG|pc|chr2:85413983:85414039:-	0	-
#Deleted in new
chr2	85413983	85414074	ENSG00000042493.15|CAPG|pc|chr2:85413983:85414074:-	0	-
#Partially deleted in new
chr2	85418266	85418432	ENSG00000042493.15|CAPG|pc|chr2:85418266:85418432:-	0	-
#Deleted in new
chr2	85422429	85422490	ENSG00000152292.16|SH2D6|pc|chr2:85422429:85422490:+	0	+
#Deleted in new
chr2	85422436	85422470	ENSG00000152292.16|SH2D6|pc|chr2:85422436:85422470:+	0	+
#Deleted in new
chr2	85422436	85422490	ENSG00000152292.16|SH2D6|pc|chr2:85422436:85422490:+	0	+
#Deleted in new
chr2	85422595	85422690	ENSG00000152292.16|SH2D6|pc|chr2:85422595:85422690:+	0	+
#Deleted in new
chr2	85422595	85422692	ENSG00000152292.16|SH2D6|pc|chr2:85422595:85422692:+	0	+
#Deleted in new
chr2	85425307	85425407	ENSG00000152292.16|SH2D6|pc|chr2:85425307:85425407:+	0	+
#Partially deleted in new
chr2	85436810	85437027	ENSG00000152292.16|SH2D6|pc|chr2:85436810:85437027:+	0	+
#Partially deleted in new
chr2	85436836	85436921	ENSG00000152292.16|SH2D6|pc|chr2:85436836:85436921:+	0	+
#Partially deleted in new
chr2	85436836	85437027	ENSG00000152292.16|SH2D6|pc|chr2:85436836:85437027:+	0	+
#Partially deleted in new
chr2	85436836	85437029	ENSG00000152292.16|SH2D6|pc|chr2:85436836:85437029:+	0	+
#Partially deleted in new
chr2	85544722	85550126	ENSG00000115486.11|GGCX|pc|chr2:85544722:85550126:-	0	-
#Partially deleted in new
chr2	85547619	85548004	ENSG00000115486.11|GGCX|pc|chr2:85547619:85548004:-	0	-
#Partially deleted in new
chr2	8559832	8567951	ENSG00000236008.1|LINC01814|lncRNA|chr2:8559832:8567951:-	0	-
#Partially deleted in new
chr2	85612102	85612359	ENSG00000168883.19|USP39|pc|chr2:85612102:85612359:+	0	+
#Partially deleted in new
chr2	85612104	85612359	ENSG00000168883.19|USP39|pc|chr2:85612104:85612359:+	0	+
#Partially deleted in new
chr2	85612121	85612359	ENSG00000168883.19|USP39|pc|chr2:85612121:85612359:+	0	+
#Partially deleted in new
chr2	85639474	85639822	ENSG00000168883.19|USP39|pc|chr2:85639474:85639822:+	0	+
#Deleted in new
chr2	85645813	85645899	ENSG00000168883.19|USP39|pc|chr2:85645813:85645899:+	0	+
#Deleted in new
chr2	85645813	85646167	ENSG00000168883.19|USP39|pc|chr2:85645813:85646167:+	0	+
#Partially deleted in new
chr2	85658254	85658855	ENSG00000168878.16|SFTPB|pc|chr2:85658254:85658855:-	0	-
#Partially deleted in new
chr2	85658289	85658855	ENSG00000168878.16|SFTPB|pc|chr2:85658289:85658855:-	0	-
#Deleted in new
chr2	85662213	85662279	ENSG00000168878.16|SFTPB|pc|chr2:85662213:85662279:-	0	-
#Deleted in new
chr2	85685174	85685221	ENSG00000115523.16|GNLY|pc|chr2:85685174:85685221:+	0	+
#Deleted in new
chr2	85694290	85694470	ENSG00000115523.16|GNLY|pc|chr2:85694290:85694470:+	0	+
#Deleted in new
chr2	85694292	85694470	ENSG00000115523.16|GNLY|pc|chr2:85694292:85694470:+	0	+
#Deleted in new
chr2	85694301	85694470	ENSG00000115523.16|GNLY|pc|chr2:85694301:85694470:+	0	+
#Deleted in new
chr2	85694327	85694470	ENSG00000115523.16|GNLY|pc|chr2:85694327:85694470:+	0	+
#Deleted in new
chr2	85694331	85694470	ENSG00000115523.16|GNLY|pc|chr2:85694331:85694470:+	0	+
#Deleted in new
chr2	85694341	85695423	ENSG00000115523.16|GNLY|pc|chr2:85694341:85695423:+	0	+
#Deleted in new
chr2	85694357	85694470	ENSG00000115523.16|GNLY|pc|chr2:85694357:85694470:+	0	+
#Deleted in new
chr2	85694379	85694470	ENSG00000115523.16|GNLY|pc|chr2:85694379:85694470:+	0	+
#Deleted in new
chr2	85694425	85694470	ENSG00000115523.16|GNLY|pc|chr2:85694425:85694470:+	0	+
#Deleted in new
chr2	85694752	85694923	ENSG00000115523.16|GNLY|pc|chr2:85694752:85694923:+	0	+
#Deleted in new
chr2	85694752	85694996	ENSG00000115523.16|GNLY|pc|chr2:85694752:85694996:+	0	+
#Deleted in new
chr2	85694752	85695423	ENSG00000115523.16|GNLY|pc|chr2:85694752:85695423:+	0	+
#Deleted in new
chr2	85694903	85695186	ENSG00000115523.16|GNLY|pc|chr2:85694903:85695186:+	0	+
#Deleted in new
chr2	85694915	85694996	ENSG00000115523.16|GNLY|pc|chr2:85694915:85694996:+	0	+
#Deleted in new
chr2	85695136	85695423	ENSG00000115523.16|GNLY|pc|chr2:85695136:85695423:+	0	+
#Deleted in new
chr2	85695319	85695423	ENSG00000115523.16|GNLY|pc|chr2:85695319:85695423:+	0	+
#Deleted in new
chr2	85695367	85695423	ENSG00000115523.16|GNLY|pc|chr2:85695367:85695423:+	0	+
#Deleted in new
chr2	85695957	85696056	ENSG00000115523.16|GNLY|pc|chr2:85695957:85696056:+	0	+
#Deleted in new
chr2	85695957	85696106	ENSG00000115523.16|GNLY|pc|chr2:85695957:85696106:+	0	+
#Deleted in new
chr2	85695957	85696391	ENSG00000115523.16|GNLY|pc|chr2:85695957:85696391:+	0	+
#Deleted in new
chr2	85695957	85696393	ENSG00000115523.16|GNLY|pc|chr2:85695957:85696393:+	0	+
#Deleted in new
chr2	85695957	85696435	ENSG00000115523.16|GNLY|pc|chr2:85695957:85696435:+	0	+
#Deleted in new
chr2	85695957	85696494	ENSG00000115523.16|GNLY|pc|chr2:85695957:85696494:+	0	+
#Deleted in new
chr2	85695957	85696532	ENSG00000115523.16|GNLY|pc|chr2:85695957:85696532:+	0	+
#Deleted in new
chr2	85695957	85696730	ENSG00000115523.16|GNLY|pc|chr2:85695957:85696730:+	0	+
#Deleted in new
chr2	85696564	85696797	ENSG00000115523.16|GNLY|pc|chr2:85696564:85696797:+	0	+
#Deleted in new
chr2	85696987	85697101	ENSG00000115523.16|GNLY|pc|chr2:85696987:85697101:+	0	+
#Deleted in new
chr2	85696987	85697677	ENSG00000115523.16|GNLY|pc|chr2:85696987:85697677:+	0	+
#Deleted in new
chr2	85697505	85697677	ENSG00000115523.16|GNLY|pc|chr2:85697505:85697677:+	0	+
#Deleted in new
chr2	85698397	85698447	ENSG00000115523.16|GNLY|pc|chr2:85698397:85698447:+	0	+
#Deleted in new
chr2	85698563	85698744	ENSG00000115523.16|GNLY|pc|chr2:85698563:85698744:+	0	+
#Deleted in new
chr2	85698563	85698747	ENSG00000115523.16|GNLY|pc|chr2:85698563:85698747:+	0	+
#Deleted in new
chr2	85698563	85698757	ENSG00000115523.16|GNLY|pc|chr2:85698563:85698757:+	0	+
#Deleted in new
chr2	85698563	85698854	ENSG00000115523.16|GNLY|pc|chr2:85698563:85698854:+	0	+
#Deleted in new
chr2	85751343	85751862	ENSG00000168874.12|ATOH8|pc|chr2:85751343:85751862:+	0	+
#Partially deleted in new
chr2	85780964	85781167	ENSG00000168874.12|ATOH8|pc|chr2:85780964:85781167:+	0	+
#Deleted in new
chr2	85781033	85781166	ENSG00000168874.12|ATOH8|pc|chr2:85781033:85781166:+	0	+
#Deleted in new
chr2	85815129	85815355	ENSG00000229498.1|AC105053.1|lncRNA|chr2:85815129:85815355:+	0	+
#Deleted in new
chr2	85818307	85818396	ENSG00000229498.1|AC105053.1|lncRNA|chr2:85818307:85818396:+	0	+
#Deleted in new
chr2	85823995	85825391	ENSG00000229498.1|AC105053.1|lncRNA|chr2:85823995:85825391:+	0	+
#Deleted in new
chr2	85850991	85851703	ENSG00000115525.17|ST3GAL5|pc|chr2:85850991:85851703:-	0	-
#Deleted in new
chr2	85851263	85851703	ENSG00000115525.17|ST3GAL5|pc|chr2:85851263:85851703:-	0	-
#Deleted in new
chr2	85851393	85851703	ENSG00000115525.17|ST3GAL5|pc|chr2:85851393:85851703:-	0	-
#Partially deleted in new
chr2	85852859	85855525	ENSG00000115525.17|ST3GAL5|pc|chr2:85852859:85855525:-	0	-
#Partially deleted in new
chr2	85852859	85856448	ENSG00000115525.17|ST3GAL5|pc|chr2:85852859:85856448:-	0	-
#Deleted in new
chr2	85858133	85858247	ENSG00000115525.17|ST3GAL5|pc|chr2:85858133:85858247:-	0	-
#Deleted in new
chr2	85865857	85866200	ENSG00000115525.17|ST3GAL5|pc|chr2:85865857:85866200:-	0	-
#Deleted in new
chr2	85867604	85867670	ENSG00000115525.17|ST3GAL5|pc|chr2:85867604:85867670:-	0	-
#Deleted in new
chr2	85867844	85868058	ENSG00000115525.17|ST3GAL5|pc|chr2:85867844:85868058:-	0	-
#Deleted in new
chr2	85870071	85870175	ENSG00000115525.17|ST3GAL5|pc|chr2:85870071:85870175:-	0	-
#Deleted in new
chr2	85870071	85870179	ENSG00000115525.17|ST3GAL5|pc|chr2:85870071:85870179:-	0	-
#Deleted in new
chr2	85870071	85870239	ENSG00000115525.17|ST3GAL5|pc|chr2:85870071:85870239:-	0	-
#Deleted in new
chr2	85870071	85870253	ENSG00000115525.17|ST3GAL5|pc|chr2:85870071:85870253:-	0	-
#Deleted in new
chr2	85870071	85870258	ENSG00000115525.17|ST3GAL5|pc|chr2:85870071:85870258:-	0	-
#Deleted in new
chr2	85902388	85902609	ENSG00000115525.17|ST3GAL5|pc|chr2:85902388:85902609:-	0	-
#Deleted in new
chr2	85902465	85902543	ENSG00000115525.17|ST3GAL5|pc|chr2:85902465:85902543:-	0	-
#Deleted in new
chr2	86107117	86107200	ENSG00000132300.18|PTCD3|pc|chr2:86107117:86107200:+	0	+
#Partially deleted in new
chr2	86108499	86108925	ENSG00000132300.18|PTCD3|pc|chr2:86108499:86108925:+	0	+
#Deleted in new
chr2	86111789	86112095	ENSG00000132300.18|PTCD3|pc|chr2:86111789:86112095:+	0	+
#Partially deleted in new
chr2	86132877	86133063	ENSG00000132300.18|PTCD3|pc|chr2:86132877:86133063:+	0	+
#Partially deleted in new
chr2	86137468	86142157	ENSG00000132300.18|PTCD3|pc|chr2:86137468:86142157:+	0	+
#Deleted in new
chr2	8622769	8622942	ENSG00000231083.1|AC011747.1|lncRNA|chr2:8622769:8622942:-	0	-
#Deleted in new
chr2	86467338	86467368	ENSG00000115548.16|KDM3A|pc|chr2:86467338:86467368:+	0	+
#Deleted in new
chr2	86484680	86484718	ENSG00000115548.16|KDM3A|pc|chr2:86484680:86484718:+	0	+
#Deleted in new
chr2	86527047	86527241	ENSG00000115561.15|CHMP3|pc|chr2:86527047:86527241:-	0	-
#Deleted in new
chr2	86561634	86561941	ENSG00000115561.15|CHMP3|pc|chr2:86561634:86561941:-	0	-
#Deleted in new
chr2	86562069	86562247	ENSG00000228363.2|AC015971.1|lncRNA|chr2:86562069:86562247:+	0	+
#Deleted in new
chr2	86562074	86562247	ENSG00000228363.2|AC015971.1|lncRNA|chr2:86562074:86562247:+	0	+
#Deleted in new
chr2	86563976	86564140	ENSG00000228363.2|AC015971.1|lncRNA|chr2:86563976:86564140:+	0	+
#Deleted in new
chr2	8666635	8666787	ENSG00000235092.5|ID2-AS1|lncRNA|chr2:8666635:8666787:-	0	-
#Deleted in new
chr2	86688231	86688325	ENSG00000249884.8|RNF103-CHMP3|pc|chr2:86688231:86688325:-	0	-
#Deleted in new
chr2	8671580	8671772	ENSG00000235092.5|ID2-AS1|lncRNA|chr2:8671580:8671772:-	0	-
#Partially deleted in new
chr2	86720981	86721122	ENSG00000249884.8|RNF103-CHMP3|pc|chr2:86720981:86721122:-	0	-
#Deleted in new
chr2	8673036	8673307	ENSG00000235092.5|ID2-AS1|lncRNA|chr2:8673036:8673307:-	0	-
#Deleted in new
chr2	8673149	8673307	ENSG00000235092.5|ID2-AS1|lncRNA|chr2:8673149:8673307:-	0	-
#Deleted in new
chr2	8675743	8675766	ENSG00000235092.5|ID2-AS1|lncRNA|chr2:8675743:8675766:-	0	-
#Deleted in new
chr2	8675743	8676029	ENSG00000235092.5|ID2-AS1|lncRNA|chr2:8675743:8676029:-	0	-
#Partially deleted in new
chr2	86771300	86771450	ENSG00000153561.12|RMND5A|pc|chr2:86771300:86771450:+	0	+
#Deleted in new
chr2	86801510	86801657	ENSG00000153563.15|CD8A|pc|chr2:86801510:86801657:-	0	-
#Deleted in new
chr2	86807446	86807782	ENSG00000153563.15|CD8A|pc|chr2:86807446:86807782:-	0	-
#Deleted in new
chr2	86808118	86808396	ENSG00000153563.15|CD8A|pc|chr2:86808118:86808396:-	0	-
#Partially deleted in new
chr2	868117	868191	ENSG00000237667.5|LINC01115|lncRNA|chr2:868117:868191:-	0	-
#Partially deleted in new
chr2	868117	868426	ENSG00000237667.5|LINC01115|lncRNA|chr2:868117:868426:-	0	-
#Deleted in new
chr2	86815338	86815718	ENSG00000172116.21|CD8B|pc|chr2:86815338:86815718:-	0	-
#Deleted in new
chr2	86815346	86815718	ENSG00000172116.21|CD8B|pc|chr2:86815346:86815718:-	0	-
#Deleted in new
chr2	86815449	86815718	ENSG00000172116.21|CD8B|pc|chr2:86815449:86815718:-	0	-
#Deleted in new
chr2	86815556	86815718	ENSG00000172116.21|CD8B|pc|chr2:86815556:86815718:-	0	-
#Deleted in new
chr2	86822320	86822374	ENSG00000172116.21|CD8B|pc|chr2:86822320:86822374:-	0	-
#Deleted in new
chr2	86844631	86844644	ENSG00000172116.21|CD8B|pc|chr2:86844631:86844644:-	0	-
#Deleted in new
chr2	87002558	87003157	ENSG00000183281.14|PLGLB1|pc|chr2:87002558:87003157:-	0	-
#Partially deleted in new
chr2	87012301	87013119	ENSG00000183281.14|PLGLB1|pc|chr2:87012301:87013119:-	0	-
#Partially deleted in new
chr2	87012311	87013119	ENSG00000183281.14|PLGLB1|pc|chr2:87012311:87013119:-	0	-
#Deleted in new
chr2	87012512	87012547	ENSG00000187627.15|RGPD1|pc|chr2:87012512:87012547:+	0	+
#Deleted in new
chr2	87012512	87012663	ENSG00000187627.15|RGPD1|pc|chr2:87012512:87012663:+	0	+
#Deleted in new
chr2	87012512	87012741	ENSG00000187627.15|RGPD1|pc|chr2:87012512:87012741:+	0	+
#Partially deleted in new
chr2	87012512	87013976	ENSG00000187627.15|RGPD1|pc|chr2:87012512:87013976:+	0	+
#Partially deleted in new
chr2	87012624	87013119	ENSG00000183281.14|PLGLB1|pc|chr2:87012624:87013119:-	0	-
#Partially deleted in new
chr2	87017552	87018708	ENSG00000183281.14|PLGLB1|pc|chr2:87017552:87018708:-	0	-
#Deleted in new
chr2	87017952	87017985	ENSG00000183281.14|PLGLB1|pc|chr2:87017952:87017985:-	0	-
#Deleted in new
chr2	87249094	87249711	ENSG00000281477.1|LINC01955|lncRNA|chr2:87249094:87249711:-	0	-
#Deleted in new
chr2	87253575	87253750	ENSG00000281477.1|LINC01955|lncRNA|chr2:87253575:87253750:-	0	-
#Deleted in new
chr2	87439522	87439893	ENSG00000280721.1|LINC01943|lncRNA|chr2:87439522:87439893:-	0	-
#Deleted in new
chr2	87439841	87439893	ENSG00000280721.1|LINC01943|lncRNA|chr2:87439841:87439893:-	0	-
#Deleted in new
chr2	87445659	87445756	ENSG00000280721.1|LINC01943|lncRNA|chr2:87445659:87445756:-	0	-
#Deleted in new
chr2	87472739	87472885	ENSG00000222041.10|CYTOR|lncRNA|chr2:87472739:87472885:+	0	+
#Deleted in new
chr2	87478121	87478230	ENSG00000222041.10|CYTOR|lncRNA|chr2:87478121:87478230:+	0	+
#Deleted in new
chr2	87480222	87480423	ENSG00000222041.10|CYTOR|lncRNA|chr2:87480222:87480423:+	0	+
#Deleted in new
chr2	87480222	87480607	ENSG00000222041.10|CYTOR|lncRNA|chr2:87480222:87480607:+	0	+
#Deleted in new
chr2	87480222	87480692	ENSG00000222041.10|CYTOR|lncRNA|chr2:87480222:87480692:+	0	+
#Partially deleted in new
chr2	87751226	87752382	ENSG00000125551.18|PLGLB2|pc|chr2:87751226:87752382:+	0	+
#Partially deleted in new
chr2	87755954	87757426	ENSG00000185304.14|RGPD2|pc|chr2:87755954:87757426:-	0	-
#Partially deleted in new
chr2	87756819	87757633	ENSG00000125551.18|PLGLB2|pc|chr2:87756819:87757633:+	0	+
#Deleted in new
chr2	87771405	87771433	ENSG00000185304.14|RGPD2|pc|chr2:87771405:87771433:-	0	-
#Deleted in new
chr2	88083052	88083219	ENSG00000115593.14|SMYD1|pc|chr2:88083052:88083219:+	0	+
#Partially deleted in new
chr2	88112101	88112484	ENSG00000115593.14|SMYD1|pc|chr2:88112101:88112484:+	0	+
#Deleted in new
chr2	88183720	88183807	ENSG00000144115.16|THNSL2|pc|chr2:88183720:88183807:+	0	+
#Deleted in new
chr2	8825742	8825913	ENSG00000134313.15|KIDINS220|pc|chr2:8825742:8825913:-	0	-
#Deleted in new
chr2	88538719	88539254	ENSG00000225420.1|AC104134.1|lncRNA|chr2:88538719:88539254:+	0	+
#Deleted in new
chr2	88540064	88540179	ENSG00000225420.1|AC104134.1|lncRNA|chr2:88540064:88540179:+	0	+
#Deleted in new
chr2	89542841	89543836	ENSG00000283196.1|AC006453.2|lncRNA|chr2:89542841:89543836:-	0	-
#Deleted in new
chr2	89554089	89554600	ENSG00000283196.1|AC006453.2|lncRNA|chr2:89554089:89554600:-	0	-
#Deleted in new
chr2	89562092	89562684	ENSG00000283196.1|AC006453.2|lncRNA|chr2:89562092:89562684:-	0	-
#Deleted in new
chr2	89562334	89562684	ENSG00000283196.1|AC006453.2|lncRNA|chr2:89562334:89562684:-	0	-
#Deleted in new
chr2	8974358	8974435	ENSG00000143797.11|MBOAT2|pc|chr2:8974358:8974435:-	0	-
#Deleted in new
chr2	900215	900452	ENSG00000228799.5|LINC01939|lncRNA|chr2:900215:900452:-	0	-
#Deleted in new
chr2	901496	901718	ENSG00000228799.5|LINC01939|lncRNA|chr2:901496:901718:-	0	-
#Deleted in new
chr2	901561	901718	ENSG00000228799.5|LINC01939|lncRNA|chr2:901561:901718:-	0	-
#Deleted in new
chr2	901891	901959	ENSG00000228799.5|LINC01939|lncRNA|chr2:901891:901959:-	0	-
#Deleted in new
chr2	905219	905297	ENSG00000228799.5|LINC01939|lncRNA|chr2:905219:905297:-	0	-
#Deleted in new
chr2	905219	905451	ENSG00000228799.5|LINC01939|lncRNA|chr2:905219:905451:-	0	-
#Deleted in new
chr2	9104435	9104581	ENSG00000242136.1|AC093904.2|lncRNA|chr2:9104435:9104581:+	0	+
#Deleted in new
chr2	910925	911402	ENSG00000234796.1|AC113607.1|lncRNA|chr2:910925:911402:-	0	-
#Deleted in new
chr2	9115196	9115252	ENSG00000244310.1|AC093904.3|lncRNA|chr2:9115196:9115252:+	0	+
#Deleted in new
chr2	9116572	9116884	ENSG00000244310.1|AC093904.3|lncRNA|chr2:9116572:9116884:+	0	+
#Deleted in new
chr2	9144663	9144844	ENSG00000240980.1|AC093904.1|lncRNA|chr2:9144663:9144844:+	0	+
#Deleted in new
chr2	9146013	9146106	ENSG00000240980.1|AC093904.1|lncRNA|chr2:9146013:9146106:+	0	+
#Deleted in new
chr2	921012	921124	ENSG00000234796.1|AC113607.1|lncRNA|chr2:921012:921124:-	0	-
#Deleted in new
chr2	94588521	94588547	ENSG00000259916.1|AL845331.2|pc|chr2:94588521:94588547:+	0	+
#Deleted in new
chr2	9473657	9473899	ENSG00000134330.18|IAH1|pc|chr2:9473657:9473899:+	0	+
#Deleted in new
chr2	9473817	9473899	ENSG00000134330.18|IAH1|pc|chr2:9473817:9473899:+	0	+
#Deleted in new
chr2	9474857	9475217	ENSG00000134330.18|IAH1|pc|chr2:9474857:9475217:+	0	+
#Deleted in new
chr2	9475021	9475147	ENSG00000134330.18|IAH1|pc|chr2:9475021:9475147:+	0	+
#Deleted in new
chr2	9475054	9475217	ENSG00000134330.18|IAH1|pc|chr2:9475054:9475217:+	0	+
#Deleted in new
chr2	9480870	9480903	ENSG00000134330.18|IAH1|pc|chr2:9480870:9480903:+	0	+
#Partially deleted in new
chr2	9484431	9486829	ENSG00000134330.18|IAH1|pc|chr2:9484431:9486829:+	0	+
#Deleted in new
chr2	9487455	9487547	ENSG00000134330.18|IAH1|pc|chr2:9487455:9487547:+	0	+
#Partially deleted in new
chr2	9496314	9496543	ENSG00000134330.18|IAH1|pc|chr2:9496314:9496543:+	0	+
#Deleted in new
chr2	95053042	95053176	ENSG00000231062.1|AC103563.2|lncRNA|chr2:95053042:95053176:-	0	-
#Partially deleted in new
chr2	95090385	95093691	ENSG00000144029.11|MRPS5|pc|chr2:95090385:95093691:-	0	-
#Partially deleted in new
chr2	95103752	95104730	ENSG00000144029.11|MRPS5|pc|chr2:95103752:95104730:-	0	-
#Deleted in new
chr2	9512316	9512412	ENSG00000239300.5|AC080162.1|lncRNA|chr2:9512316:9512412:+	0	+
#Partially deleted in new
chr2	95153132	95155691	ENSG00000144026.11|ZNF514|pc|chr2:95153132:95155691:-	0	-
#Deleted in new
chr2	95158859	95159337	ENSG00000144026.11|ZNF514|pc|chr2:95158859:95159337:-	0	-
#Deleted in new
chr2	95159239	95159607	ENSG00000144026.11|ZNF514|pc|chr2:95159239:95159607:-	0	-
#Deleted in new
chr2	95165030	95165413	ENSG00000144026.11|ZNF514|pc|chr2:95165030:95165413:-	0	-
#Deleted in new
chr2	95207534	95207834	ENSG00000233757.6|AC092835.1|pc|chr2:95207534:95207834:+	0	+
#Deleted in new
chr2	95207710	95207834	ENSG00000233757.6|AC092835.1|pc|chr2:95207710:95207834:+	0	+
#Deleted in new
chr2	95211617	95211720	ENSG00000233757.6|AC092835.1|pc|chr2:95211617:95211720:+	0	+
#Deleted in new
chr2	95232060	95232098	ENSG00000233757.6|AC092835.1|pc|chr2:95232060:95232098:+	0	+
#Deleted in new
chr2	95259075	95259144	ENSG00000233757.6|AC092835.1|pc|chr2:95259075:95259144:+	0	+
#Deleted in new
chr2	95259075	95259236	ENSG00000233757.6|AC092835.1|pc|chr2:95259075:95259236:+	0	+
#Deleted in new
chr2	95259519	95259774	ENSG00000233757.6|AC092835.1|pc|chr2:95259519:95259774:+	0	+
#Deleted in new
chr2	95355036	95355282	ENSG00000115041.12|KCNIP3|pc|chr2:95355036:95355282:+	0	+
#Deleted in new
chr2	95402720	95402992	ENSG00000115042.9|FAHD2A|pc|chr2:95402720:95402992:+	0	+
#Deleted in new
chr2	95402722	95402872	ENSG00000115042.9|FAHD2A|pc|chr2:95402722:95402872:+	0	+
#Deleted in new
chr2	95402725	95402872	ENSG00000115042.9|FAHD2A|pc|chr2:95402725:95402872:+	0	+
#Deleted in new
chr2	95402790	95402992	ENSG00000115042.9|FAHD2A|pc|chr2:95402790:95402992:+	0	+
#Deleted in new
chr2	95479385	95479408	ENSG00000144010.9|TRIM43B|pc|chr2:95479385:95479408:-	0	-
#Split in new
chr2	95525108	95526702	ENSG00000272913.1|AC009237.14|lncRNA|chr2:95525108:95526702:-	0	-
#Deleted in new
chr2	95592017	95592149	ENSG00000144015.4|TRIM43|pc|chr2:95592017:95592149:+	0	+
#Deleted in new
chr2	95597328	95597351	ENSG00000144015.4|TRIM43|pc|chr2:95597328:95597351:+	0	+
#Deleted in new
chr2	95807117	95807302	ENSG00000232931.5|LINC00342|lncRNA|chr2:95807117:95807302:-	0	-
#Partially deleted in new
chr2	95814049	95816215	ENSG00000232931.5|LINC00342|lncRNA|chr2:95814049:95816215:-	0	-
#Deleted in new
chr2	95836918	95837108	ENSG00000174501.14|ANKRD36C|pc|chr2:95836918:95837108:-	0	-
#Deleted in new
chr2	95851165	95851195	ENSG00000174501.14|ANKRD36C|pc|chr2:95851165:95851195:-	0	-
#Duplicated in new
chr2	95852289	95853861	ENSG00000174501.14|ANKRD36C|pc|chr2:95852289:95853861:-	0	-
#Deleted in new
chr2	95882301	95882374	ENSG00000174501.14|ANKRD36C|pc|chr2:95882301:95882374:-	0	-
#Deleted in new
chr2	95886047	95886120	ENSG00000174501.14|ANKRD36C|pc|chr2:95886047:95886120:-	0	-
#Deleted in new
chr2	95886215	95886244	ENSG00000174501.14|ANKRD36C|pc|chr2:95886215:95886244:-	0	-
#Deleted in new
chr2	95887924	95887997	ENSG00000174501.14|ANKRD36C|pc|chr2:95887924:95887997:-	0	-
#Deleted in new
chr2	95888091	95888120	ENSG00000174501.14|ANKRD36C|pc|chr2:95888091:95888120:-	0	-
#Deleted in new
chr2	95891664	95891737	ENSG00000174501.14|ANKRD36C|pc|chr2:95891664:95891737:-	0	-
#Deleted in new
chr2	95891831	95891860	ENSG00000174501.14|ANKRD36C|pc|chr2:95891831:95891860:-	0	-
#Deleted in new
chr2	95893532	95893605	ENSG00000174501.14|ANKRD36C|pc|chr2:95893532:95893605:-	0	-
#Deleted in new
chr2	95893695	95893724	ENSG00000174501.14|ANKRD36C|pc|chr2:95893695:95893724:-	0	-
#Deleted in new
chr2	95894212	95894275	ENSG00000174501.14|ANKRD36C|pc|chr2:95894212:95894275:-	0	-
#Deleted in new
chr2	95895398	95895471	ENSG00000174501.14|ANKRD36C|pc|chr2:95895398:95895471:-	0	-
#Deleted in new
chr2	95895561	95895590	ENSG00000174501.14|ANKRD36C|pc|chr2:95895561:95895590:-	0	-
#Deleted in new
chr2	95899144	95899217	ENSG00000174501.14|ANKRD36C|pc|chr2:95899144:95899217:-	0	-
#Deleted in new
chr2	95899307	95899336	ENSG00000174501.14|ANKRD36C|pc|chr2:95899307:95899336:-	0	-
#Deleted in new
chr2	95902885	95902958	ENSG00000174501.14|ANKRD36C|pc|chr2:95902885:95902958:-	0	-
#Deleted in new
chr2	95903052	95903081	ENSG00000174501.14|ANKRD36C|pc|chr2:95903052:95903081:-	0	-
#Deleted in new
chr2	95904760	95904833	ENSG00000174501.14|ANKRD36C|pc|chr2:95904760:95904833:-	0	-
#Deleted in new
chr2	95904923	95904952	ENSG00000174501.14|ANKRD36C|pc|chr2:95904923:95904952:-	0	-
#Deleted in new
chr2	95905440	95905503	ENSG00000174501.14|ANKRD36C|pc|chr2:95905440:95905503:-	0	-
#Deleted in new
chr2	95906630	95906703	ENSG00000174501.14|ANKRD36C|pc|chr2:95906630:95906703:-	0	-
#Deleted in new
chr2	95906793	95907499	ENSG00000174501.14|ANKRD36C|pc|chr2:95906793:95907499:-	0	-
#Deleted in new
chr2	95910539	95910568	ENSG00000174501.14|ANKRD36C|pc|chr2:95910539:95910568:-	0	-
#Deleted in new
chr2	95912243	95912316	ENSG00000174501.14|ANKRD36C|pc|chr2:95912243:95912316:-	0	-
#Deleted in new
chr2	95912406	95912435	ENSG00000174501.14|ANKRD36C|pc|chr2:95912406:95912435:-	0	-
#Deleted in new
chr2	95914107	95914180	ENSG00000174501.14|ANKRD36C|pc|chr2:95914107:95914180:-	0	-
#Deleted in new
chr2	95914274	95914303	ENSG00000174501.14|ANKRD36C|pc|chr2:95914274:95914303:-	0	-
#Deleted in new
chr2	95915979	95916052	ENSG00000174501.14|ANKRD36C|pc|chr2:95915979:95916052:-	0	-
#Deleted in new
chr2	95916142	95916171	ENSG00000174501.14|ANKRD36C|pc|chr2:95916142:95916171:-	0	-
#Deleted in new
chr2	95917854	95917927	ENSG00000174501.14|ANKRD36C|pc|chr2:95917854:95917927:-	0	-
#Deleted in new
chr2	95918013	95918042	ENSG00000174501.14|ANKRD36C|pc|chr2:95918013:95918042:-	0	-
#Deleted in new
chr2	95919891	95919920	ENSG00000174501.14|ANKRD36C|pc|chr2:95919891:95919920:-	0	-
#Deleted in new
chr2	95935453	95935526	ENSG00000174501.14|ANKRD36C|pc|chr2:95935453:95935526:-	0	-
#Deleted in new
chr2	95935615	95935644	ENSG00000174501.14|ANKRD36C|pc|chr2:95935615:95935644:-	0	-
#Deleted in new
chr2	95938828	95938901	ENSG00000174501.14|ANKRD36C|pc|chr2:95938828:95938901:-	0	-
#Deleted in new
chr2	95938986	95939015	ENSG00000174501.14|ANKRD36C|pc|chr2:95938986:95939015:-	0	-
#Deleted in new
chr2	95950748	95950779	ENSG00000174501.14|ANKRD36C|pc|chr2:95950748:95950779:-	0	-
#Deleted in new
chr2	95951347	95951408	ENSG00000174501.14|ANKRD36C|pc|chr2:95951347:95951408:-	0	-
#Deleted in new
chr2	95953938	95954005	ENSG00000174501.14|ANKRD36C|pc|chr2:95953938:95954005:-	0	-
#Deleted in new
chr2	95956785	95956816	ENSG00000174501.14|ANKRD36C|pc|chr2:95956785:95956816:-	0	-
#Deleted in new
chr2	95962351	95962424	ENSG00000174501.14|ANKRD36C|pc|chr2:95962351:95962424:-	0	-
#Deleted in new
chr2	95962518	95962547	ENSG00000174501.14|ANKRD36C|pc|chr2:95962518:95962547:-	0	-
#Partially deleted in new
chr2	95991511	95991793	ENSG00000174501.14|ANKRD36C|pc|chr2:95991511:95991793:-	0	-
#Partially deleted in new
chr2	95991511	95991831	ENSG00000174501.14|ANKRD36C|pc|chr2:95991511:95991831:-	0	-
#Partially deleted in new
chr2	96034964	96035245	ENSG00000186281.12|GPAT2|pc|chr2:96034964:96035245:-	0	-
#Deleted in new
chr2	96039283	96039451	ENSG00000186281.12|GPAT2|pc|chr2:96039283:96039451:-	0	-
#Partially deleted in new
chr2	96187216	96188117	ENSG00000084090.13|STARD7|pc|chr2:96187216:96188117:-	0	-
#Deleted in new
chr2	9620641	9620701	ENSG00000134308.13|YWHAQ|pc|chr2:9620641:9620701:-	0	-
#Deleted in new
chr2	96239712	96240688	ENSG00000204685.6|STARD7-AS1|lncRNA|chr2:96239712:96240688:+	0	+
#Deleted in new
chr2	96240238	96240752	ENSG00000204685.6|STARD7-AS1|lncRNA|chr2:96240238:96240752:+	0	+
#Deleted in new
chr2	96240443	96240688	ENSG00000204685.6|STARD7-AS1|lncRNA|chr2:96240443:96240688:+	0	+
#Deleted in new
chr2	96241876	96242594	ENSG00000204685.6|STARD7-AS1|lncRNA|chr2:96241876:96242594:+	0	+
#Deleted in new
chr2	96241876	96242621	ENSG00000204685.6|STARD7-AS1|lncRNA|chr2:96241876:96242621:+	0	+
#Partially deleted in new
chr2	96276462	96276724	ENSG00000144028.14|SNRNP200|pc|chr2:96276462:96276724:-	0	-
#Deleted in new
chr2	96307262	96307406	ENSG00000230747.1|AC021188.1|lncRNA|chr2:96307262:96307406:-	0	-
#Deleted in new
chr2	96321135	96321731	ENSG00000230747.1|AC021188.1|lncRNA|chr2:96321135:96321731:-	0	-
#Deleted in new
chr2	9641363	9641457	ENSG00000240687.1|AC082651.1|lncRNA|chr2:9641363:9641457:+	0	+
#Partially deleted in new
chr2	96497642	96498446	ENSG00000163121.9|NEURL3|pc|chr2:96497642:96498446:-	0	-
#Partially deleted in new
chr2	96497645	96498446	ENSG00000163121.9|NEURL3|pc|chr2:96497645:96498446:-	0	-
#Partially deleted in new
chr2	96504530	96504709	ENSG00000163121.9|NEURL3|pc|chr2:96504530:96504709:-	0	-
#Partially deleted in new
chr2	96507793	96508109	ENSG00000163121.9|NEURL3|pc|chr2:96507793:96508109:-	0	-
#Deleted in new
chr2	96615042	96615158	ENSG00000114982.17|KANSL3|pc|chr2:96615042:96615158:-	0	-
#Deleted in new
chr2	96628027	96628084	ENSG00000114982.17|KANSL3|pc|chr2:96628027:96628084:-	0	-
#Deleted in new
chr2	96628571	96628648	ENSG00000114982.17|KANSL3|pc|chr2:96628571:96628648:-	0	-
#Deleted in new
chr2	96634148	96634178	ENSG00000114982.17|KANSL3|pc|chr2:96634148:96634178:-	0	-
#Deleted in new
chr2	96688964	96688966	ENSG00000249715.11|FER1L5|pc|chr2:96688964:96688966:+	0	+
#Deleted in new
chr2	96695296	96695297	ENSG00000249715.11|FER1L5|pc|chr2:96695296:96695297:+	0	+
#Deleted in new
chr2	96813493	96813657	ENSG00000273265.1|AC092636.1|lncRNA|chr2:96813493:96813657:-	0	-
#Deleted in new
chr2	96824525	96824859	ENSG00000163126.14|ANKRD23|pc|chr2:96824525:96824859:-	0	-
#Deleted in new
chr2	9684357	9684456	ENSG00000244260.1|AC082651.4|lncRNA|chr2:9684357:9684456:+	0	+
#Deleted in new
chr2	9685673	9685820	ENSG00000244260.1|AC082651.4|lncRNA|chr2:9685673:9685820:+	0	+
#Deleted in new
chr2	96895060	96895142	ENSG00000168754.14|FAM178B|pc|chr2:96895060:96895142:-	0	-
#Deleted in new
chr2	96895060	96895162	ENSG00000168754.14|FAM178B|pc|chr2:96895060:96895162:-	0	-
#Deleted in new
chr2	96897913	96898133	ENSG00000168754.14|FAM178B|pc|chr2:96897913:96898133:-	0	-
#Partially deleted in new
chr2	9692472	9693567	ENSG00000244260.1|AC082651.4|lncRNA|chr2:9692472:9693567:+	0	+
#Partially deleted in new
chr2	96951682	96951935	ENSG00000168754.14|FAM178B|pc|chr2:96951682:96951935:-	0	-
#Deleted in new
chr2	9708100	9708413	ENSG00000244260.1|AC082651.4|lncRNA|chr2:9708100:9708413:+	0	+
#Deleted in new
chr2	97094700	97094820	ENSG00000144199.11|FAHD2B|pc|chr2:97094700:97094820:-	0	-
#Deleted in new
chr2	97094700	97094835	ENSG00000144199.11|FAHD2B|pc|chr2:97094700:97094835:-	0	-
#Deleted in new
chr2	97094700	97094839	ENSG00000144199.11|FAHD2B|pc|chr2:97094700:97094839:-	0	-
#Deleted in new
chr2	97094700	97094848	ENSG00000144199.11|FAHD2B|pc|chr2:97094700:97094848:-	0	-
#Deleted in new
chr2	97094700	97094873	ENSG00000144199.11|FAHD2B|pc|chr2:97094700:97094873:-	0	-
#Deleted in new
chr2	97094700	97094882	ENSG00000144199.11|FAHD2B|pc|chr2:97094700:97094882:-	0	-
#Partially deleted in new
chr2	97094934	97097433	ENSG00000279791.1|AC018892.3|lncRNA|chr2:97094934:97097433:+	0	+
#Partially deleted in new
chr2	97113495	97113936	ENSG00000135976.17|ANKRD36|pc|chr2:97113495:97113936:+	0	+
#Partially deleted in new
chr2	97113551	97113936	ENSG00000135976.17|ANKRD36|pc|chr2:97113551:97113936:+	0	+
#Deleted in new
chr2	97146485	97146516	ENSG00000135976.17|ANKRD36|pc|chr2:97146485:97146516:+	0	+
#Deleted in new
chr2	97149294	97149361	ENSG00000135976.17|ANKRD36|pc|chr2:97149294:97149361:+	0	+
#Deleted in new
chr2	97151878	97151939	ENSG00000135976.17|ANKRD36|pc|chr2:97151878:97151939:+	0	+
#Deleted in new
chr2	97152503	97152534	ENSG00000135976.17|ANKRD36|pc|chr2:97152503:97152534:+	0	+
#Deleted in new
chr2	97154674	97154741	ENSG00000135976.17|ANKRD36|pc|chr2:97154674:97154741:+	0	+
#Deleted in new
chr2	97163238	97163240	ENSG00000135976.17|ANKRD36|pc|chr2:97163238:97163240:+	0	+
#Deleted in new
chr2	97163243	97163345	ENSG00000135976.17|ANKRD36|pc|chr2:97163243:97163345:+	0	+
#Deleted in new
chr2	97163243	97163854	ENSG00000135976.17|ANKRD36|pc|chr2:97163243:97163854:+	0	+
#Deleted in new
chr2	97164282	97164311	ENSG00000135976.17|ANKRD36|pc|chr2:97164282:97164311:+	0	+
#Deleted in new
chr2	97164396	97164469	ENSG00000135976.17|ANKRD36|pc|chr2:97164396:97164469:+	0	+
#Deleted in new
chr2	97167694	97167767	ENSG00000135976.17|ANKRD36|pc|chr2:97167694:97167767:+	0	+
#Deleted in new
chr2	97215629	97215640	ENSG00000135976.17|ANKRD36|pc|chr2:97215629:97215640:+	0	+
#Deleted in new
chr2	97215781	97215825	ENSG00000135976.17|ANKRD36|pc|chr2:97215781:97215825:+	0	+
#Deleted in new
chr2	97264328	97264517	ENSG00000135976.17|ANKRD36|pc|chr2:97264328:97264517:+	0	+
#Deleted in new
chr2	97264328	97264521	ENSG00000135976.17|ANKRD36|pc|chr2:97264328:97264521:+	0	+
#Deleted in new
chr2	97281903	97282084	ENSG00000277701.4|AC159540.2|lncRNA|chr2:97281903:97282084:+	0	+
#Partially deleted in new
chr2	97282491	97284785	ENSG00000277701.4|AC159540.2|lncRNA|chr2:97282491:97284785:+	0	+
#Partially deleted in new
chr2	97283901	97284164	ENSG00000277701.4|AC159540.2|lncRNA|chr2:97283901:97284164:+	0	+
#Deleted in new
chr2	97291539	97291632	ENSG00000277701.4|AC159540.2|lncRNA|chr2:97291539:97291632:+	0	+
#Deleted in new
chr2	97291539	97291721	ENSG00000277701.4|AC159540.2|lncRNA|chr2:97291539:97291721:+	0	+
#Deleted in new
chr2	97291539	97291724	ENSG00000277701.4|AC159540.2|lncRNA|chr2:97291539:97291724:+	0	+
#Deleted in new
chr2	97291539	97291780	ENSG00000277701.4|AC159540.2|lncRNA|chr2:97291539:97291780:+	0	+
#Deleted in new
chr2	97301728	97302031	ENSG00000237837.1|AC159540.1|lncRNA|chr2:97301728:97302031:+	0	+
#Deleted in new
chr2	97303899	97304151	ENSG00000237837.1|AC159540.1|lncRNA|chr2:97303899:97304151:+	0	+
#Deleted in new
chr2	97416164	97416405	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97416164:97416405:-	0	-
#Deleted in new
chr2	97416220	97416405	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97416220:97416405:-	0	-
#Deleted in new
chr2	97416223	97416405	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97416223:97416405:-	0	-
#Partially deleted in new
chr2	97423176	97425470	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97423176:97425470:-	0	-
#Partially deleted in new
chr2	97423797	97424069	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97423797:97424069:-	0	-
#Partially deleted in new
chr2	97423801	97424201	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97423801:97424201:-	0	-
#Deleted in new
chr2	97424294	97424405	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97424294:97424405:-	0	-
#Deleted in new
chr2	97425877	97426003	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97425877:97426003:-	0	-
#Deleted in new
chr2	97425877	97426058	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97425877:97426058:-	0	-
#Deleted in new
chr2	97425877	97426072	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97425877:97426072:-	0	-
#Deleted in new
chr2	97425877	97426205	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97425877:97426205:-	0	-
#Deleted in new
chr2	97425877	97426617	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97425877:97426617:-	0	-
#Deleted in new
chr2	97426842	97427127	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97426842:97427127:-	0	-
#Deleted in new
chr2	97429216	97429786	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97429216:97429786:-	0	-
#Deleted in new
chr2	97433299	97433390	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97433299:97433390:-	0	-
#Deleted in new
chr2	97433299	97433487	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97433299:97433487:-	0	-
#Deleted in new
chr2	97433299	97433527	ENSG00000230606.10|AC092683.1|lncRNA|chr2:97433299:97433527:-	0	-
#Deleted in new
chr2	97434661	97434847	ENSG00000278766.2|AC092683.2|lncRNA|chr2:97434661:97434847:+	0	+
#Deleted in new
chr2	97492662	97492855	ENSG00000196912.12|ANKRD36B|pc|chr2:97492662:97492855:-	0	-
#Deleted in new
chr2	97492665	97492855	ENSG00000196912.12|ANKRD36B|pc|chr2:97492665:97492855:-	0	-
#Deleted in new
chr2	97492666	97492855	ENSG00000196912.12|ANKRD36B|pc|chr2:97492666:97492855:-	0	-
#Deleted in new
chr2	97504797	97506435	ENSG00000196912.12|ANKRD36B|pc|chr2:97504797:97506435:-	0	-
#Deleted in new
chr2	97506963	97507065	ENSG00000196912.12|ANKRD36B|pc|chr2:97506963:97507065:-	0	-
#Deleted in new
chr2	97507035	97507065	ENSG00000196912.12|ANKRD36B|pc|chr2:97507035:97507065:-	0	-
#Deleted in new
chr2	97538167	97538240	ENSG00000196912.12|ANKRD36B|pc|chr2:97538167:97538240:-	0	-
#Deleted in new
chr2	97539721	97539725	ENSG00000196912.12|ANKRD36B|pc|chr2:97539721:97539725:-	0	-
#Deleted in new
chr2	97541833	97541983	ENSG00000196912.12|ANKRD36B|pc|chr2:97541833:97541983:-	0	-
#Deleted in new
chr2	97541910	97541983	ENSG00000196912.12|ANKRD36B|pc|chr2:97541910:97541983:-	0	-
#Deleted in new
chr2	97542078	97542107	ENSG00000196912.12|ANKRD36B|pc|chr2:97542078:97542107:-	0	-
#Deleted in new
chr2	97547207	97547233	ENSG00000196912.12|ANKRD36B|pc|chr2:97547207:97547233:-	0	-
#Deleted in new
chr2	97547425	97547501	ENSG00000196912.12|ANKRD36B|pc|chr2:97547425:97547501:-	0	-
#Deleted in new
chr2	97547535	97547608	ENSG00000196912.12|ANKRD36B|pc|chr2:97547535:97547608:-	0	-
#Deleted in new
chr2	97547564	97547608	ENSG00000196912.12|ANKRD36B|pc|chr2:97547564:97547608:-	0	-
#Deleted in new
chr2	97547702	97547731	ENSG00000196912.12|ANKRD36B|pc|chr2:97547702:97547731:-	0	-
#Deleted in new
chr2	97549418	97549491	ENSG00000196912.12|ANKRD36B|pc|chr2:97549418:97549491:-	0	-
#Deleted in new
chr2	97549585	97549614	ENSG00000196912.12|ANKRD36B|pc|chr2:97549585:97549614:-	0	-
#Deleted in new
chr2	97551288	97551361	ENSG00000196912.12|ANKRD36B|pc|chr2:97551288:97551361:-	0	-
#Deleted in new
chr2	97551311	97551361	ENSG00000196912.12|ANKRD36B|pc|chr2:97551311:97551361:-	0	-
#Deleted in new
chr2	97551451	97551480	ENSG00000196912.12|ANKRD36B|pc|chr2:97551451:97551480:-	0	-
#Deleted in new
chr2	97553167	97553240	ENSG00000196912.12|ANKRD36B|pc|chr2:97553167:97553240:-	0	-
#Deleted in new
chr2	97553342	97553371	ENSG00000196912.12|ANKRD36B|pc|chr2:97553342:97553371:-	0	-
#Deleted in new
chr2	97556936	97557009	ENSG00000196912.12|ANKRD36B|pc|chr2:97556936:97557009:-	0	-
#Deleted in new
chr2	97558798	97558871	ENSG00000196912.12|ANKRD36B|pc|chr2:97558798:97558871:-	0	-
#Deleted in new
chr2	97558965	97558994	ENSG00000196912.12|ANKRD36B|pc|chr2:97558965:97558994:-	0	-
#Deleted in new
chr2	9757495	9759299	ENSG00000243491.1|AC082651.3|lncRNA|chr2:9757495:9759299:-	0	-
#Partially deleted in new
chr2	97589524	97589864	ENSG00000196912.12|ANKRD36B|pc|chr2:97589524:97589864:-	0	-
#Partially deleted in new
chr2	97589524	97589965	ENSG00000196912.12|ANKRD36B|pc|chr2:97589524:97589965:-	0	-
#Deleted in new
chr2	97665802	97665940	ENSG00000228486.10|LINC01125|pc|chr2:97665802:97665940:+	0	+
#Deleted in new
chr2	97665823	97665920	ENSG00000228486.10|LINC01125|pc|chr2:97665823:97665920:+	0	+
#Deleted in new
chr2	97666903	97667054	ENSG00000228486.10|LINC01125|pc|chr2:97666903:97667054:+	0	+
#Deleted in new
chr2	97666956	97667054	ENSG00000228486.10|LINC01125|pc|chr2:97666956:97667054:+	0	+
#Deleted in new
chr2	97667963	97668073	ENSG00000228486.10|LINC01125|pc|chr2:97667963:97668073:+	0	+
#Deleted in new
chr2	97668090	97668627	ENSG00000228486.10|LINC01125|pc|chr2:97668090:97668627:+	0	+
#Deleted in new
chr2	97668647	97669122	ENSG00000228486.10|LINC01125|pc|chr2:97668647:97669122:+	0	+
#Deleted in new
chr2	97670565	97670705	ENSG00000228486.10|LINC01125|pc|chr2:97670565:97670705:+	0	+
#Deleted in new
chr2	97670589	97670689	ENSG00000228486.10|LINC01125|pc|chr2:97670589:97670689:+	0	+
#Deleted in new
chr2	97670589	97670705	ENSG00000228486.10|LINC01125|pc|chr2:97670589:97670705:+	0	+
#Partially deleted in new
chr2	97670589	97671512	ENSG00000228486.10|LINC01125|pc|chr2:97670589:97671512:+	0	+
#Deleted in new
chr2	97670972	97671146	ENSG00000228486.10|LINC01125|pc|chr2:97670972:97671146:+	0	+
#Deleted in new
chr2	97670972	97671363	ENSG00000228486.10|LINC01125|pc|chr2:97670972:97671363:+	0	+
#Deleted in new
chr2	97670972	97671374	ENSG00000228486.10|LINC01125|pc|chr2:97670972:97671374:+	0	+
#Deleted in new
chr2	97671190	97671306	ENSG00000228486.10|LINC01125|pc|chr2:97671190:97671306:+	0	+
#Deleted in new
chr2	97671193	97671306	ENSG00000228486.10|LINC01125|pc|chr2:97671193:97671306:+	0	+
#Deleted in new
chr2	97671219	97671306	ENSG00000228486.10|LINC01125|pc|chr2:97671219:97671306:+	0	+
#Deleted in new
chr2	97671330	97671382	ENSG00000228486.10|LINC01125|pc|chr2:97671330:97671382:+	0	+
#Partially deleted in new
chr2	97671330	97671481	ENSG00000228486.10|LINC01125|pc|chr2:97671330:97671481:+	0	+
#Partially deleted in new
chr2	97671330	97671499	ENSG00000228486.10|LINC01125|pc|chr2:97671330:97671499:+	0	+
#Deleted in new
chr2	97672278	97672450	ENSG00000228486.10|LINC01125|pc|chr2:97672278:97672450:+	0	+
#Deleted in new
chr2	97677414	97677507	ENSG00000228486.10|LINC01125|pc|chr2:97677414:97677507:+	0	+
#Deleted in new
chr2	97677418	97677700	ENSG00000228486.10|LINC01125|pc|chr2:97677418:97677700:+	0	+
#Deleted in new
chr2	97677418	97677755	ENSG00000228486.10|LINC01125|pc|chr2:97677418:97677755:+	0	+
#Deleted in new
chr2	97688894	97688940	ENSG00000228486.10|LINC01125|pc|chr2:97688894:97688940:+	0	+
#Deleted in new
chr2	97688894	97688993	ENSG00000228486.10|LINC01125|pc|chr2:97688894:97688993:+	0	+
#Deleted in new
chr2	97688924	97688993	ENSG00000228486.10|LINC01125|pc|chr2:97688924:97688993:+	0	+
#Deleted in new
chr2	97690255	97690327	ENSG00000228486.10|LINC01125|pc|chr2:97690255:97690327:+	0	+
#Deleted in new
chr2	97690991	97691150	ENSG00000228486.10|LINC01125|pc|chr2:97690991:97691150:+	0	+
#Deleted in new
chr2	97691055	97691150	ENSG00000228486.10|LINC01125|pc|chr2:97691055:97691150:+	0	+
#Deleted in new
chr2	97694446	97694578	ENSG00000228486.10|LINC01125|pc|chr2:97694446:97694578:+	0	+
#Deleted in new
chr2	97694446	97694599	ENSG00000228486.10|LINC01125|pc|chr2:97694446:97694599:+	0	+
#Deleted in new
chr2	97694455	97694599	ENSG00000228486.10|LINC01125|pc|chr2:97694455:97694599:+	0	+
#Deleted in new
chr2	97694531	97694599	ENSG00000228486.10|LINC01125|pc|chr2:97694531:97694599:+	0	+
#Deleted in new
chr2	97697256	97697321	ENSG00000228486.10|LINC01125|pc|chr2:97697256:97697321:+	0	+
#Deleted in new
chr2	9770198	9770341	ENSG00000243491.1|AC082651.3|lncRNA|chr2:9770198:9770341:-	0	-
#Deleted in new
chr2	97907114	97907246	ENSG00000075568.16|TMEM131|pc|chr2:97907114:97907246:-	0	-
#Deleted in new
chr2	98099222	98099339	ENSG00000168658.18|VWA3B|pc|chr2:98099222:98099339:+	0	+
#Deleted in new
chr2	98179243	98179317	ENSG00000168658.18|VWA3B|pc|chr2:98179243:98179317:+	0	+
#Deleted in new
chr2	98192269	98192342	ENSG00000168658.18|VWA3B|pc|chr2:98192269:98192342:+	0	+
#Deleted in new
chr2	98192285	98192342	ENSG00000168658.18|VWA3B|pc|chr2:98192285:98192342:+	0	+
#Deleted in new
chr2	98216754	98216975	ENSG00000168658.18|VWA3B|pc|chr2:98216754:98216975:+	0	+
#Deleted in new
chr2	98216782	98216964	ENSG00000168658.18|VWA3B|pc|chr2:98216782:98216964:+	0	+
#Deleted in new
chr2	98269341	98269491	ENSG00000168658.18|VWA3B|pc|chr2:98269341:98269491:+	0	+
#Partially deleted in new
chr2	98290510	98292103	ENSG00000168658.18|VWA3B|pc|chr2:98290510:98292103:+	0	+
#Deleted in new
chr2	98331707	98331749	ENSG00000222000.7|AC092675.1|lncRNA|chr2:98331707:98331749:-	0	-
#Deleted in new
chr2	98333213	98333304	ENSG00000222000.7|AC092675.1|lncRNA|chr2:98333213:98333304:-	0	-
#Deleted in new
chr2	98333216	98333304	ENSG00000222000.7|AC092675.1|lncRNA|chr2:98333216:98333304:-	0	-
#Deleted in new
chr2	98333440	98333503	ENSG00000222000.7|AC092675.1|lncRNA|chr2:98333440:98333503:-	0	-
#Deleted in new
chr2	98355814	98356005	ENSG00000222000.7|AC092675.1|lncRNA|chr2:98355814:98356005:-	0	-
#Deleted in new
chr2	9851967	9852114	ENSG00000115750.16|TAF1B|pc|chr2:9851967:9852114:+	0	+
#Deleted in new
chr2	9851967	9852124	ENSG00000115750.16|TAF1B|pc|chr2:9851967:9852124:+	0	+
#Partially deleted in new
chr2	98520686	98521766	ENSG00000040933.15|INPP4A|pc|chr2:98520686:98521766:+	0	+
#Partially deleted in new
chr2	98605761	98605837	ENSG00000183513.8|COA5|pc|chr2:98605761:98605837:-	0	-
#Partially deleted in new
chr2	98655861	98656465	ENSG00000071073.12|MGAT4A|pc|chr2:98655861:98656465:-	0	-
#Deleted in new
chr2	9868662	9868764	ENSG00000115750.16|TAF1B|pc|chr2:9868662:9868764:+	0	+
#Deleted in new
chr2	98768610	98768727	ENSG00000226791.6|AC109826.1|lncRNA|chr2:98768610:98768727:-	0	-
#Deleted in new
chr2	98768610	98768786	ENSG00000226791.6|AC109826.1|lncRNA|chr2:98768610:98768786:-	0	-
#Deleted in new
chr2	98768901	98768990	ENSG00000226791.6|AC109826.1|lncRNA|chr2:98768901:98768990:-	0	-
#Partially deleted in new
chr2	98768901	98769046	ENSG00000226791.6|AC109826.1|lncRNA|chr2:98768901:98769046:-	0	-
#Deleted in new
chr2	98772811	98772920	ENSG00000226791.6|AC109826.1|lncRNA|chr2:98772811:98772920:-	0	-
#Deleted in new
chr2	98809738	98809779	ENSG00000196872.11|KIAA1211L|pc|chr2:98809738:98809779:-	0	-
#Deleted in new
chr2	98897376	98897478	ENSG00000196872.11|KIAA1211L|pc|chr2:98897376:98897478:-	0	-
#Deleted in new
chr2	98897376	98897481	ENSG00000196872.11|KIAA1211L|pc|chr2:98897376:98897481:-	0	-
#Partially deleted in new
chr2	99117127	99117246	ENSG00000135951.14|TSGA10|pc|chr2:99117127:99117246:-	0	-
#Deleted in new
chr2	99118550	99118686	ENSG00000135951.14|TSGA10|pc|chr2:99118550:99118686:-	0	-
#Deleted in new
chr2	99118550	99118779	ENSG00000135951.14|TSGA10|pc|chr2:99118550:99118779:-	0	-
#Deleted in new
chr2	99118776	99118801	ENSG00000135951.14|TSGA10|pc|chr2:99118776:99118801:-	0	-
#Partially deleted in new
chr2	99124766	99127176	ENSG00000135951.14|TSGA10|pc|chr2:99124766:99127176:-	0	-
#Deleted in new
chr2	99142284	99142401	ENSG00000241962.9|AC079447.1|pc|chr2:99142284:99142401:+	0	+
#Deleted in new
chr2	99142284	99142401	ENSG00000273045.5|C2orf15|pc|chr2:99142284:99142401:+	0	+
#Deleted in new
chr2	99147026	99147122	ENSG00000273045.5|C2orf15|pc|chr2:99147026:99147122:+	0	+
#Deleted in new
chr2	99147401	99147490	ENSG00000273045.5|C2orf15|pc|chr2:99147401:99147490:+	0	+
#Deleted in new
chr2	99147401	99147493	ENSG00000241962.9|AC079447.1|pc|chr2:99147401:99147493:+	0	+
#Deleted in new
chr2	99147401	99147493	ENSG00000273045.5|C2orf15|pc|chr2:99147401:99147493:+	0	+
#Deleted in new
chr2	99148263	99148348	ENSG00000135951.14|TSGA10|pc|chr2:99148263:99148348:-	0	-
#Deleted in new
chr2	99148264	99148348	ENSG00000135951.14|TSGA10|pc|chr2:99148264:99148348:-	0	-
#Deleted in new
chr2	99154290	99154427	ENSG00000135951.14|TSGA10|pc|chr2:99154290:99154427:-	0	-
#Deleted in new
chr2	99154290	99154636	ENSG00000135951.14|TSGA10|pc|chr2:99154290:99154636:-	0	-
#Deleted in new
chr2	99154692	99154861	ENSG00000135951.14|TSGA10|pc|chr2:99154692:99154861:-	0	-
#Deleted in new
chr2	99154692	99154890	ENSG00000135951.14|TSGA10|pc|chr2:99154692:99154890:-	0	-
#Deleted in new
chr2	99154692	99154917	ENSG00000135951.14|TSGA10|pc|chr2:99154692:99154917:-	0	-
#Deleted in new
chr2	99154692	99154962	ENSG00000135951.14|TSGA10|pc|chr2:99154692:99154962:-	0	-
#Deleted in new
chr2	99154692	99154964	ENSG00000135951.14|TSGA10|pc|chr2:99154692:99154964:-	0	-
#Deleted in new
chr2	99154836	99154869	ENSG00000135951.14|TSGA10|pc|chr2:99154836:99154869:-	0	-
#Partially deleted in new
chr2	99154954	99155051	ENSG00000144182.16|LIPT1|pc|chr2:99154954:99155051:+	0	+
#Deleted in new
chr2	99156300	99156426	ENSG00000144182.16|LIPT1|pc|chr2:99156300:99156426:+	0	+
#Deleted in new
chr2	99156300	99156426	ENSG00000273155.1|AC092587.1|pc|chr2:99156300:99156426:+	0	+
#Deleted in new
chr2	99156300	99156810	ENSG00000144182.16|LIPT1|pc|chr2:99156300:99156810:+	0	+
#Deleted in new
chr2	99161426	99161668	ENSG00000158411.11|MITD1|pc|chr2:99161426:99161668:-	0	-
#Deleted in new
chr2	99178289	99178335	ENSG00000158411.11|MITD1|pc|chr2:99178289:99178335:-	0	-
#Deleted in new
chr2	99206633	99206757	ENSG00000241962.9|AC079447.1|pc|chr2:99206633:99206757:+	0	+
#Deleted in new
chr2	99215997	99216114	ENSG00000241962.9|AC079447.1|pc|chr2:99215997:99216114:+	0	+
#Partially deleted in new
chr2	99304639	99304742	ENSG00000144214.9|LYG1|pc|chr2:99304639:99304742:-	0	-
#Deleted in new
chr2	99321125	99321265	ENSG00000241962.9|AC079447.1|pc|chr2:99321125:99321265:+	0	+
#Deleted in new
chr2	99321152	99321265	ENSG00000241962.9|AC079447.1|pc|chr2:99321152:99321265:+	0	+
#Deleted in new
chr2	99322508	99322733	ENSG00000241962.9|AC079447.1|pc|chr2:99322508:99322733:+	0	+
#Deleted in new
chr2	99322508	99322741	ENSG00000241962.9|AC079447.1|pc|chr2:99322508:99322741:+	0	+
#Deleted in new
chr2	99322560	99322659	ENSG00000115514.11|TXNDC9|pc|chr2:99322560:99322659:-	0	-
#Partially deleted in new
chr2	9936359	9939590	ENSG00000269973.1|AC010969.2|lncRNA|chr2:9936359:9939590:+	0	+
#Deleted in new
chr2	99371137	99371139	ENSG00000158417.10|EIF5B|pc|chr2:99371137:99371139:+	0	+
#Partially deleted in new
chr2	99397046	99398909	ENSG00000158417.10|EIF5B|pc|chr2:99397046:99398909:+	0	+
#Deleted in new
chr2	99405217	99405843	ENSG00000273306.1|AC018690.1|lncRNA|chr2:99405217:99405843:+	0	+
#Deleted in new
chr2	99451344	99451480	ENSG00000135945.9|REV1|pc|chr2:99451344:99451480:-	0	-
#Deleted in new
chr2	99451344	99451501	ENSG00000135945.9|REV1|pc|chr2:99451344:99451501:-	0	-
#Deleted in new
chr2	99630577	99630682	ENSG00000144218.18|AFF3|pc|chr2:99630577:99630682:-	0	-
#Deleted in new
chr2	99630915	99631015	ENSG00000144218.18|AFF3|pc|chr2:99630915:99631015:-	0	-
#Deleted in new
chr2	9995305	9995360	ENSG00000134317.17|GRHL1|pc|chr2:9995305:9995360:+	0	+
#Deleted in new
chr3	100011702	100011758	ENSG00000184220.11|CMSS1|pc|chr3:100011702:100011758:+	0	+
#Partially deleted in new
chr3	100025427	100025558	ENSG00000184220.11|CMSS1|pc|chr3:100025427:100025558:+	0	+
#Deleted in new
chr3	10006417	10007623	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10006417:10007623:-	0	-
#Deleted in new
chr3	10006444	10007623	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10006444:10007623:-	0	-
#Deleted in new
chr3	10007343	10007623	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10007343:10007623:-	0	-
#Deleted in new
chr3	10007425	10007623	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10007425:10007623:-	0	-
#Deleted in new
chr3	10007461	10007623	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10007461:10007623:-	0	-
#Deleted in new
chr3	10008302	10008652	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10008302:10008652:-	0	-
#Deleted in new
chr3	10008403	10008480	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10008403:10008480:-	0	-
#Deleted in new
chr3	10008403	10008618	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10008403:10008618:-	0	-
#Deleted in new
chr3	10008403	10008652	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10008403:10008652:-	0	-
#Deleted in new
chr3	10008993	10009131	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10008993:10009131:-	0	-
#Deleted in new
chr3	10009887	10010402	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10009887:10010402:-	0	-
#Deleted in new
chr3	10010170	10010402	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10010170:10010402:-	0	-
#Deleted in new
chr3	10010885	10011095	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10010885:10011095:-	0	-
#Deleted in new
chr3	10010885	10011114	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10010885:10011114:-	0	-
#Deleted in new
chr3	100109967	100110029	ENSG00000168386.18|FILIP1L|pc|chr3:100109967:100110029:-	0	-
#Deleted in new
chr3	10011022	10011116	ENSG00000125037.12|EMC3|pc|chr3:10011022:10011116:-	0	-
#Deleted in new
chr3	10011022	10011176	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10011022:10011176:-	0	-
#Deleted in new
chr3	10011022	10011177	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10011022:10011177:-	0	-
#Deleted in new
chr3	10011022	10011209	ENSG00000206567.9|AC022007.1|lncRNA|chr3:10011022:10011209:-	0	-
#Partially deleted in new
chr3	100178304	100181732	ENSG00000184220.11|CMSS1|pc|chr3:100178304:100181732:+	0	+
#Deleted in new
chr3	10026467	10026626	ENSG00000144554.10|FANCD2|pc|chr3:10026467:10026626:+	0	+
#Deleted in new
chr3	10026498	10026626	ENSG00000144554.10|FANCD2|pc|chr3:10026498:10026626:+	0	+
#Deleted in new
chr3	100267191	100267248	ENSG00000036054.12|TBC1D23|pc|chr3:100267191:100267248:+	0	+
#Deleted in new
chr3	10032298	10032351	ENSG00000144554.10|FANCD2|pc|chr3:10032298:10032351:+	0	+
#Deleted in new
chr3	10032298	10032423	ENSG00000144554.10|FANCD2|pc|chr3:10032298:10032423:+	0	+
#Partially deleted in new
chr3	100348802	100350011	ENSG00000114021.11|NIT2|pc|chr3:100348802:100350011:+	0	+
#Partially deleted in new
chr3	100355176	100361635	ENSG00000114021.11|NIT2|pc|chr3:100355176:100361635:+	0	+
#Partially deleted in new
chr3	10039720	10041562	ENSG00000144554.10|FANCD2|pc|chr3:10039720:10041562:+	0	+
#Deleted in new
chr3	10040536	10040684	ENSG00000144554.10|FANCD2|pc|chr3:10040536:10040684:+	0	+
#Deleted in new
chr3	10045526	10045744	ENSG00000144554.10|FANCD2|pc|chr3:10045526:10045744:+	0	+
#Duplicated in new
chr3	100519532	100519608	ENSG00000181458.10|TMEM45A|pc|chr3:100519532:100519608:+	0	+
#Partially deleted in new
chr3	100570608	100574659	ENSG00000181458.10|TMEM45A|pc|chr3:100570608:100574659:+	0	+
#Deleted in new
chr3	100571029	100571319	ENSG00000181458.10|TMEM45A|pc|chr3:100571029:100571319:+	0	+
#Deleted in new
chr3	100710970	100711068	ENSG00000114354.13|TFG|pc|chr3:100710970:100711068:+	0	+
#Partially deleted in new
chr3	100742475	100744931	ENSG00000114354.13|TFG|pc|chr3:100742475:100744931:+	0	+
#Deleted in new
chr3	1008134	1008266	ENSG00000235158.1|AC087430.1|lncRNA|chr3:1008134:1008266:+	0	+
#Deleted in new
chr3	10083543	10083717	ENSG00000163705.12|FANCD2OS|pc|chr3:10083543:10083717:-	0	-
#Deleted in new
chr3	100930715	100930994	ENSG00000154175.16|ABI3BP|pc|chr3:100930715:100930994:-	0	-
#Deleted in new
chr3	100945579	100945676	ENSG00000154175.16|ABI3BP|pc|chr3:100945579:100945676:-	0	-
#Partially deleted in new
chr3	101347325	101347718	ENSG00000138468.15|SENP7|pc|chr3:101347325:101347718:-	0	-
#Deleted in new
chr3	10142545	10143021	ENSG00000134086.7|VHL|pc|chr3:10142545:10143021:+	0	+
#Deleted in new
chr3	101561861	101562003	ENSG00000174173.6|TRMT10C|pc|chr3:101561861:101562003:+	0	+
#Deleted in new
chr3	101562040	101562109	ENSG00000174173.6|TRMT10C|pc|chr3:101562040:101562109:+	0	+
#Deleted in new
chr3	101763108	101763186	ENSG00000182504.10|CEP97|pc|chr3:101763108:101763186:+	0	+
#Deleted in new
chr3	101781705	101782290	ENSG00000144815.15|NXPE3|pc|chr3:101781705:101782290:+	0	+
#Deleted in new
chr3	101782109	101782289	ENSG00000144815.15|NXPE3|pc|chr3:101782109:101782289:+	0	+
#Deleted in new
chr3	101782109	101782290	ENSG00000144815.15|NXPE3|pc|chr3:101782109:101782290:+	0	+
#Deleted in new
chr3	101782659	101782780	ENSG00000144815.15|NXPE3|pc|chr3:101782659:101782780:+	0	+
#Deleted in new
chr3	101824691	101824998	ENSG00000249474.1|AC020651.1|lncRNA|chr3:101824691:101824998:-	0	-
#Deleted in new
chr3	101960357	101960462	ENSG00000241280.1|AC106712.1|lncRNA|chr3:101960357:101960462:+	0	+
#Deleted in new
chr3	101960361	101960462	ENSG00000214407.3|LINC02085|lncRNA|chr3:101960361:101960462:+	0	+
#Deleted in new
chr3	101960385	101960731	ENSG00000241280.1|AC106712.1|lncRNA|chr3:101960385:101960731:+	0	+
#Deleted in new
chr3	102099243	102099281	ENSG00000170044.8|ZPLD1|pc|chr3:102099243:102099281:+	0	+
#Deleted in new
chr3	102101505	102101571	ENSG00000170044.8|ZPLD1|pc|chr3:102101505:102101571:+	0	+
#Deleted in new
chr3	102385126	102385317	ENSG00000170044.8|ZPLD1|pc|chr3:102385126:102385317:+	0	+
#Deleted in new
chr3	102392169	102392225	ENSG00000170044.8|ZPLD1|pc|chr3:102392169:102392225:+	0	+
#Deleted in new
chr3	102435014	102435154	ENSG00000170044.8|ZPLD1|pc|chr3:102435014:102435154:+	0	+
#Deleted in new
chr3	102435032	102435154	ENSG00000170044.8|ZPLD1|pc|chr3:102435032:102435154:+	0	+
#Deleted in new
chr3	10287027	10287326	ENSG00000157017.15|GHRL|pc|chr3:10287027:10287326:-	0	-
#Deleted in new
chr3	10287413	10287481	ENSG00000240288.7|GHRLOS|lncRNA|chr3:10287413:10287481:+	0	+
#Deleted in new
chr3	10287944	10288102	ENSG00000240288.7|GHRLOS|lncRNA|chr3:10287944:10288102:+	0	+
#Deleted in new
chr3	10287977	10288106	ENSG00000240288.7|GHRLOS|lncRNA|chr3:10287977:10288106:+	0	+
#Deleted in new
chr3	10288024	10288216	ENSG00000157017.15|GHRL|pc|chr3:10288024:10288216:-	0	-
#Deleted in new
chr3	10293130	10293336	ENSG00000157020.17|SEC13|pc|chr3:10293130:10293336:-	0	-
#Partially deleted in new
chr3	10303550	10304172	ENSG00000157020.17|SEC13|pc|chr3:10303550:10304172:-	0	-
#Partially deleted in new
chr3	10312578	10313971	ENSG00000157020.17|SEC13|pc|chr3:10312578:10313971:-	0	-
#Deleted in new
chr3	10313079	10313437	ENSG00000157020.17|SEC13|pc|chr3:10313079:10313437:-	0	-
#Deleted in new
chr3	10566254	10566471	ENSG00000236999.1|ATP2B2-IT1|lncRNA|chr3:10566254:10566471:-	0	-
#Partially deleted in new
chr3	10570120	10570375	ENSG00000236999.1|ATP2B2-IT1|lncRNA|chr3:10570120:10570375:-	0	-
#Deleted in new
chr3	106836810	106838782	ENSG00000242759.6|LINC00882|lncRNA|chr3:106836810:106838782:-	0	-
#Deleted in new
chr3	106839474	106839592	ENSG00000242759.6|LINC00882|lncRNA|chr3:106839474:106839592:-	0	-
#Deleted in new
chr3	106920965	106921060	ENSG00000242759.6|LINC00882|lncRNA|chr3:106920965:106921060:-	0	-
#Deleted in new
chr3	106922057	106922093	ENSG00000242759.6|LINC00882|lncRNA|chr3:106922057:106922093:-	0	-
#Deleted in new
chr3	106927834	106927994	ENSG00000242759.6|LINC00882|lncRNA|chr3:106927834:106927994:-	0	-
#Deleted in new
chr3	107040074	107040116	ENSG00000242759.6|LINC00882|lncRNA|chr3:107040074:107040116:-	0	-
#Partially deleted in new
chr3	107112059	107112146	ENSG00000242759.6|LINC00882|lncRNA|chr3:107112059:107112146:-	0	-
#Deleted in new
chr3	107114752	107114843	ENSG00000242759.6|LINC00882|lncRNA|chr3:107114752:107114843:-	0	-
#Deleted in new
chr3	107129192	107129317	ENSG00000242759.6|LINC00882|lncRNA|chr3:107129192:107129317:-	0	-
#Deleted in new
chr3	107129887	107129991	ENSG00000242759.6|LINC00882|lncRNA|chr3:107129887:107129991:-	0	-
#Deleted in new
chr3	107129887	107129992	ENSG00000242759.6|LINC00882|lncRNA|chr3:107129887:107129992:-	0	-
#Deleted in new
chr3	107299901	107300043	ENSG00000239828.6|AC063944.1|lncRNA|chr3:107299901:107300043:-	0	-
#Deleted in new
chr3	107299901	107300152	ENSG00000239828.6|AC063944.1|lncRNA|chr3:107299901:107300152:-	0	-
#Deleted in new
chr3	107320329	107320422	ENSG00000239828.6|AC063944.1|lncRNA|chr3:107320329:107320422:-	0	-
#Deleted in new
chr3	107322313	107322744	ENSG00000239828.6|AC063944.1|lncRNA|chr3:107322313:107322744:-	0	-
#Deleted in new
chr3	107322468	107322769	ENSG00000239828.6|AC063944.1|lncRNA|chr3:107322468:107322769:-	0	-
#Deleted in new
chr3	107322619	107322735	ENSG00000239828.6|AC063944.1|lncRNA|chr3:107322619:107322735:-	0	-
#Deleted in new
chr3	107322619	107322742	ENSG00000239828.6|AC063944.1|lncRNA|chr3:107322619:107322742:-	0	-
#Deleted in new
chr3	107322619	107322744	ENSG00000239828.6|AC063944.1|lncRNA|chr3:107322619:107322744:-	0	-
#Deleted in new
chr3	107322619	107322764	ENSG00000239828.6|AC063944.1|lncRNA|chr3:107322619:107322764:-	0	-
#Deleted in new
chr3	107324307	107324502	ENSG00000239828.6|AC063944.1|lncRNA|chr3:107324307:107324502:-	0	-
#Deleted in new
chr3	107325606	107325691	ENSG00000243701.5|DUBR|lncRNA|chr3:107325606:107325691:+	0	+
#Deleted in new
chr3	107460672	107460790	ENSG00000273125.1|LINC01990|lncRNA|chr3:107460672:107460790:+	0	+
#Deleted in new
chr3	10762831	10762922	ENSG00000226567.1|LINC00606|lncRNA|chr3:10762831:10762922:-	0	-
#Deleted in new
chr3	10763199	10763497	ENSG00000226567.1|LINC00606|lncRNA|chr3:10763199:10763497:-	0	-
#Deleted in new
chr3	107638501	107638545	ENSG00000114439.18|BBX|pc|chr3:107638501:107638545:+	0	+
#Deleted in new
chr3	107657061	107657172	ENSG00000114439.18|BBX|pc|chr3:107657061:107657172:+	0	+
#Deleted in new
chr3	107677426	107677470	ENSG00000114439.18|BBX|pc|chr3:107677426:107677470:+	0	+
#Deleted in new
chr3	107684555	107684709	ENSG00000114439.18|BBX|pc|chr3:107684555:107684709:+	0	+
#Deleted in new
chr3	10771378	10771718	ENSG00000230599.2|AC018495.1|lncRNA|chr3:10771378:10771718:+	0	+
#Deleted in new
chr3	107776204	107776349	ENSG00000114439.18|BBX|pc|chr3:107776204:107776349:+	0	+
#Partially deleted in new
chr3	107840227	107840404	ENSG00000241469.7|LINC00635|lncRNA|chr3:107840227:107840404:-	0	-
#Deleted in new
chr3	107861905	107862038	ENSG00000241469.7|LINC00635|lncRNA|chr3:107861905:107862038:-	0	-
#Deleted in new
chr3	107866231	107866505	ENSG00000241469.7|LINC00635|lncRNA|chr3:107866231:107866505:-	0	-
#Deleted in new
chr3	107866651	107866753	ENSG00000241469.7|LINC00635|lncRNA|chr3:107866651:107866753:-	0	-
#Deleted in new
chr3	107867310	107867425	ENSG00000241469.7|LINC00635|lncRNA|chr3:107867310:107867425:-	0	-
#Deleted in new
chr3	107867310	107867577	ENSG00000241469.7|LINC00635|lncRNA|chr3:107867310:107867577:-	0	-
#Deleted in new
chr3	107872325	107872480	ENSG00000241469.7|LINC00635|lncRNA|chr3:107872325:107872480:-	0	-
#Deleted in new
chr3	107872967	107873008	ENSG00000241469.7|LINC00635|lncRNA|chr3:107872967:107873008:-	0	-
#Deleted in new
chr3	107872967	107873014	ENSG00000241469.7|LINC00635|lncRNA|chr3:107872967:107873014:-	0	-
#Deleted in new
chr3	107872967	107873026	ENSG00000241469.7|LINC00635|lncRNA|chr3:107872967:107873026:-	0	-
#Partially deleted in new
chr3	107877312	107877486	ENSG00000241469.7|LINC00635|lncRNA|chr3:107877312:107877486:-	0	-
#Partially deleted in new
chr3	107877312	107877497	ENSG00000241469.7|LINC00635|lncRNA|chr3:107877312:107877497:-	0	-
#Partially deleted in new
chr3	107877901	107878068	ENSG00000241469.7|LINC00635|lncRNA|chr3:107877901:107878068:-	0	-
#Partially deleted in new
chr3	107877901	107878071	ENSG00000241469.7|LINC00635|lncRNA|chr3:107877901:107878071:-	0	-
#Partially deleted in new
chr3	107877901	107878076	ENSG00000241469.7|LINC00635|lncRNA|chr3:107877901:107878076:-	0	-
#Partially deleted in new
chr3	107877901	107878077	ENSG00000241469.7|LINC00635|lncRNA|chr3:107877901:107878077:-	0	-
#Partially deleted in new
chr3	107877901	107878079	ENSG00000241469.7|LINC00635|lncRNA|chr3:107877901:107878079:-	0	-
#Partially deleted in new
chr3	107877901	107878093	ENSG00000241469.7|LINC00635|lncRNA|chr3:107877901:107878093:-	0	-
#Deleted in new
chr3	107881954	107882000	ENSG00000241469.7|LINC00635|lncRNA|chr3:107881954:107882000:-	0	-
#Deleted in new
chr3	107923630	107923800	ENSG00000240423.1|LINC00636|lncRNA|chr3:107923630:107923800:+	0	+
#Deleted in new
chr3	108328269	108328347	ENSG00000114455.13|HHLA2|pc|chr3:108328269:108328347:+	0	+
#Duplicated in new
chr3	108416811	108416930	ENSG00000144821.9|MYH15|pc|chr3:108416811:108416930:-	0	-
#Duplicated in new
chr3	108454005	108454142	ENSG00000144821.9|MYH15|pc|chr3:108454005:108454142:-	0	-
#Deleted in new
chr3	108529262	108529322	ENSG00000144821.9|MYH15|pc|chr3:108529262:108529322:-	0	-
#Deleted in new
chr3	108743423	108743491	ENSG00000163515.6|RETNLB|pc|chr3:108743423:108743491:-	0	-
#Deleted in new
chr3	108744282	108744367	ENSG00000163515.6|RETNLB|pc|chr3:108744282:108744367:-	0	-
#Deleted in new
chr3	108745430	108745511	ENSG00000163515.6|RETNLB|pc|chr3:108745430:108745511:-	0	-
#Deleted in new
chr3	109109763	109109849	ENSG00000239314.1|MORC1-AS1|lncRNA|chr3:109109763:109109849:+	0	+
#Deleted in new
chr3	109176437	109177365	ENSG00000261364.1|AC063923.2|lncRNA|chr3:109176437:109177365:-	0	-
#Deleted in new
chr3	109178164	109178295	ENSG00000214381.4|LINC00488|lncRNA|chr3:109178164:109178295:+	0	+
#Deleted in new
chr3	109178416	109178568	ENSG00000214381.4|LINC00488|lncRNA|chr3:109178416:109178568:+	0	+
#Deleted in new
chr3	109293787	109294004	ENSG00000163530.4|DPPA2|pc|chr3:109293787:109294004:-	0	-
#Deleted in new
chr3	109316283	109316517	ENSG00000163530.4|DPPA2|pc|chr3:109316283:109316517:-	0	-
#Partially deleted in new
chr3	109326140	109328024	ENSG00000121570.12|DPPA4|pc|chr3:109326140:109328024:-	0	-
#Partially deleted in new
chr3	109326852	109328024	ENSG00000121570.12|DPPA4|pc|chr3:109326852:109328024:-	0	-
#Partially deleted in new
chr3	109327524	109328024	ENSG00000121570.12|DPPA4|pc|chr3:109327524:109328024:-	0	-
#Deleted in new
chr3	109333395	109333993	ENSG00000121570.12|DPPA4|pc|chr3:109333395:109333993:-	0	-
#Deleted in new
chr3	109333869	109333920	ENSG00000121570.12|DPPA4|pc|chr3:109333869:109333920:-	0	-
#Deleted in new
chr3	109333869	109333993	ENSG00000121570.12|DPPA4|pc|chr3:109333869:109333993:-	0	-
#Deleted in new
chr3	109417732	109417892	ENSG00000228980.3|LINC01205|lncRNA|chr3:109417732:109417892:+	0	+
#Deleted in new
chr3	109417732	109419017	ENSG00000228980.3|LINC01205|lncRNA|chr3:109417732:109419017:+	0	+
#Deleted in new
chr3	109459882	109459928	ENSG00000228980.3|LINC01205|lncRNA|chr3:109459882:109459928:+	0	+
#Deleted in new
chr3	109476722	109476762	ENSG00000228980.3|LINC01205|lncRNA|chr3:109476722:109476762:+	0	+
#Partially deleted in new
chr3	109494138	109495167	ENSG00000228980.3|LINC01205|lncRNA|chr3:109494138:109495167:+	0	+
#Deleted in new
chr3	109648106	109648135	ENSG00000242029.1|AC078980.1|lncRNA|chr3:109648106:109648135:+	0	+
#Deleted in new
chr3	109810673	109810861	ENSG00000242029.1|AC078980.1|lncRNA|chr3:109810673:109810861:+	0	+
#Partially deleted in new
chr3	110888383	110888926	ENSG00000206532.2|AC117402.1|lncRNA|chr3:110888383:110888926:-	0	-
#Deleted in new
chr3	110893707	110893830	ENSG00000242242.5|NECTIN3-AS1|lncRNA|chr3:110893707:110893830:-	0	-
#Deleted in new
chr3	110893764	110893830	ENSG00000242242.5|NECTIN3-AS1|lncRNA|chr3:110893764:110893830:-	0	-
#Partially deleted in new
chr3	111045387	111045909	ENSG00000242242.5|NECTIN3-AS1|lncRNA|chr3:111045387:111045909:-	0	-
#Deleted in new
chr3	111292718	111292885	ENSG00000153283.12|CD96|pc|chr3:111292718:111292885:+	0	+
#Deleted in new
chr3	111365781	111365918	ENSG00000153283.12|CD96|pc|chr3:111365781:111365918:+	0	+
#Deleted in new
chr3	11137092	11137399	ENSG00000196639.6|HRH1|pc|chr3:11137092:11137399:+	0	+
#Deleted in new
chr3	111496887	111497095	ENSG00000239311.1|AC092916.1|lncRNA|chr3:111496887:111497095:-	0	-
#Deleted in new
chr3	111778267	111778458	ENSG00000240891.7|PLCXD2|pc|chr3:111778267:111778458:+	0	+
#Deleted in new
chr3	111990699	111990751	ENSG00000144827.8|ABHD10|pc|chr3:111990699:111990751:+	0	+
#Partially deleted in new
chr3	112112338	112112459	ENSG00000114529.12|C3orf52|pc|chr3:112112338:112112459:+	0	+
#Deleted in new
chr3	112119468	112119562	ENSG00000114529.12|C3orf52|pc|chr3:112119468:112119562:+	0	+
#Partially deleted in new
chr3	112133422	112135359	ENSG00000261488.1|AC128688.2|lncRNA|chr3:112133422:112135359:+	0	+
#Deleted in new
chr3	112140886	112141281	ENSG00000172139.14|SLC9C1|pc|chr3:112140886:112141281:-	0	-
#Deleted in new
chr3	112140904	112141281	ENSG00000172139.14|SLC9C1|pc|chr3:112140904:112141281:-	0	-
#Deleted in new
chr3	112141215	112141281	ENSG00000172139.14|SLC9C1|pc|chr3:112141215:112141281:-	0	-
#Deleted in new
chr3	112302477	112302714	ENSG00000239482.6|AC112487.1|lncRNA|chr3:112302477:112302714:+	0	+
#Deleted in new
chr3	112307120	112307198	ENSG00000239482.6|AC112487.1|lncRNA|chr3:112307120:112307198:+	0	+
#Deleted in new
chr3	112329345	112329386	ENSG00000239482.6|AC112487.1|lncRNA|chr3:112329345:112329386:+	0	+
#Deleted in new
chr3	112330249	112330324	ENSG00000239482.6|AC112487.1|lncRNA|chr3:112330249:112330324:+	0	+
#Deleted in new
chr3	112332185	112332791	ENSG00000239482.6|AC112487.1|lncRNA|chr3:112332185:112332791:+	0	+
#Deleted in new
chr3	112332346	112332701	ENSG00000091972.18|CD200|pc|chr3:112332346:112332701:+	0	+
#Deleted in new
chr3	112332499	112332701	ENSG00000091972.18|CD200|pc|chr3:112332499:112332701:+	0	+
#Partially deleted in new
chr3	112332840	112333224	ENSG00000091972.18|CD200|pc|chr3:112332840:112333224:+	0	+
#Partially deleted in new
chr3	112333067	112333224	ENSG00000091972.18|CD200|pc|chr3:112333067:112333224:+	0	+
#Deleted in new
chr3	112396646	112398148	ENSG00000243081.2|AC092894.1|lncRNA|chr3:112396646:112398148:-	0	-
#Deleted in new
chr3	112409073	112409134	ENSG00000243081.2|AC092894.1|lncRNA|chr3:112409073:112409134:-	0	-
#Split in new
chr3	112525547	112528142	ENSG00000279349.1|AC092692.1|lncRNA|chr3:112525547:112528142:-	0	-
#Deleted in new
chr3	11252698	11252768	ENSG00000196639.6|HRH1|pc|chr3:11252698:11252768:+	0	+
#Deleted in new
chr3	11253132	11253218	ENSG00000196639.6|HRH1|pc|chr3:11253132:11253218:+	0	+
#Deleted in new
chr3	112564127	112564366	ENSG00000138459.8|SLC35A5|pc|chr3:112564127:112564366:+	0	+
#Partially deleted in new
chr3	112596793	112605763	ENSG00000091986.15|CCDC80|pc|chr3:112596793:112605763:-	0	-
#Partially deleted in new
chr3	11272422	11272709	ENSG00000197548.12|ATG7|pc|chr3:11272422:11272709:+	0	+
#Partially deleted in new
chr3	11272442	11272709	ENSG00000197548.12|ATG7|pc|chr3:11272442:11272709:+	0	+
#Deleted in new
chr3	112736446	112736696	ENSG00000240893.1|LINC02042|lncRNA|chr3:112736446:112736696:-	0	-
#Deleted in new
chr3	112749230	112749319	ENSG00000240893.1|LINC02042|lncRNA|chr3:112749230:112749319:-	0	-
#Deleted in new
chr3	11277218	11277419	ENSG00000197548.12|ATG7|pc|chr3:11277218:11277419:+	0	+
#Deleted in new
chr3	11280993	11281102	ENSG00000197548.12|ATG7|pc|chr3:11280993:11281102:+	0	+
#Deleted in new
chr3	11281036	11281102	ENSG00000197548.12|ATG7|pc|chr3:11281036:11281102:+	0	+
#Deleted in new
chr3	112818768	112818778	ENSG00000206531.10|CD200R1L|pc|chr3:112818768:112818778:-	0	-
#Deleted in new
chr3	11282192	11282438	ENSG00000197548.12|ATG7|pc|chr3:11282192:11282438:+	0	+
#Deleted in new
chr3	112837941	112838010	ENSG00000206531.10|CD200R1L|pc|chr3:112837941:112838010:-	0	-
#Deleted in new
chr3	112841246	112841344	ENSG00000206531.10|CD200R1L|pc|chr3:112841246:112841344:-	0	-
#Deleted in new
chr3	11288645	11288740	ENSG00000197548.12|ATG7|pc|chr3:11288645:11288740:+	0	+
#Deleted in new
chr3	11288648	11288740	ENSG00000197548.12|ATG7|pc|chr3:11288648:11288740:+	0	+
#Deleted in new
chr3	112947855	112947924	ENSG00000163606.10|CD200R1|pc|chr3:112947855:112947924:-	0	-
#Deleted in new
chr3	112991351	112991387	ENSG00000163607.15|GTPBP8|pc|chr3:112991351:112991387:+	0	+
#Deleted in new
chr3	112991389	112991412	ENSG00000163607.15|GTPBP8|pc|chr3:112991389:112991412:+	0	+
#Deleted in new
chr3	112991417	112991558	ENSG00000163607.15|GTPBP8|pc|chr3:112991417:112991558:+	0	+
#Deleted in new
chr3	112991566	112992540	ENSG00000163607.15|GTPBP8|pc|chr3:112991566:112992540:+	0	+
#Partially deleted in new
chr3	113002439	113006004	ENSG00000163608.14|NEPRO|pc|chr3:113002439:113006004:-	0	-
#Partially deleted in new
chr3	113002443	113006004	ENSG00000163608.14|NEPRO|pc|chr3:113002443:113006004:-	0	-
#Partially deleted in new
chr3	113014376	113015060	ENSG00000163607.15|GTPBP8|pc|chr3:113014376:113015060:+	0	+
#Deleted in new
chr3	113019065	113019160	ENSG00000163608.14|NEPRO|pc|chr3:113019065:113019160:-	0	-
#Deleted in new
chr3	11304503	11304549	ENSG00000197548.12|ATG7|pc|chr3:11304503:11304549:+	0	+
#Deleted in new
chr3	11304503	11304667	ENSG00000197548.12|ATG7|pc|chr3:11304503:11304667:+	0	+
#Deleted in new
chr3	113058945	113059067	ENSG00000241219.1|AC078785.2|lncRNA|chr3:113058945:113059067:-	0	-
#Deleted in new
chr3	113061786	113062010	ENSG00000240057.5|AC078785.1|lncRNA|chr3:113061786:113062010:+	0	+
#Partially deleted in new
chr3	113110101	113110475	ENSG00000240057.5|AC078785.1|lncRNA|chr3:113110101:113110475:+	0	+
#Deleted in new
chr3	113153271	113153488	ENSG00000243795.1|LINC02044|lncRNA|chr3:113153271:113153488:-	0	-
#Partially deleted in new
chr3	113161933	113162019	ENSG00000240057.5|AC078785.1|lncRNA|chr3:113161933:113162019:+	0	+
#Partially deleted in new
chr3	113161933	113162020	ENSG00000240057.5|AC078785.1|lncRNA|chr3:113161933:113162020:+	0	+
#Deleted in new
chr3	113183052	113183248	ENSG00000240057.5|AC078785.1|lncRNA|chr3:113183052:113183248:+	0	+
#Deleted in new
chr3	113183052	113183301	ENSG00000240057.5|AC078785.1|lncRNA|chr3:113183052:113183301:+	0	+
#Deleted in new
chr3	113417214	113417330	ENSG00000243849.1|CFAP44-AS1|lncRNA|chr3:113417214:113417330:+	0	+
#Deleted in new
chr3	113426123	113426277	ENSG00000206530.10|CFAP44|pc|chr3:113426123:113426277:-	0	-
#Deleted in new
chr3	113428892	113429061	ENSG00000243849.1|CFAP44-AS1|lncRNA|chr3:113428892:113429061:+	0	+
#Deleted in new
chr3	113434479	113434945	ENSG00000206530.10|CFAP44|pc|chr3:113434479:113434945:-	0	-
#Partially deleted in new
chr3	113442717	113445360	ENSG00000163611.11|SPICE1|pc|chr3:113442717:113445360:-	0	-
#Deleted in new
chr3	11346525	11346565	ENSG00000197548.12|ATG7|pc|chr3:11346525:11346565:+	0	+
#Deleted in new
chr3	113589782	113590189	ENSG00000239453.1|SIDT1-AS1|lncRNA|chr3:113589782:113590189:-	0	-
#Partially deleted in new
chr3	113739425	113739587	ENSG00000121579.12|NAA50|pc|chr3:113739425:113739587:-	0	-
#Deleted in new
chr3	113801138	113801167	ENSG00000114573.9|ATP6V1A|pc|chr3:113801138:113801167:+	0	+
#Deleted in new
chr3	113802757	113802825	ENSG00000114573.9|ATP6V1A|pc|chr3:113802757:113802825:+	0	+
#Deleted in new
chr3	113803301	113803344	ENSG00000114573.9|ATP6V1A|pc|chr3:113803301:113803344:+	0	+
#Deleted in new
chr3	113828181	113828279	ENSG00000178075.19|GRAMD1C|pc|chr3:113828181:113828279:+	0	+
#Deleted in new
chr3	113890624	113890759	ENSG00000178075.19|GRAMD1C|pc|chr3:113890624:113890759:+	0	+
#Deleted in new
chr3	113890664	113891024	ENSG00000178075.19|GRAMD1C|pc|chr3:113890664:113891024:+	0	+
#Deleted in new
chr3	114039384	114039488	ENSG00000163617.10|CCDC191|pc|chr3:114039384:114039488:-	0	-
#Deleted in new
chr3	114199272	114199407	ENSG00000151577.12|DRD3|pc|chr3:114199272:114199407:-	0	-
#Split in new
chr3	114235721	114237578	ENSG00000174255.6|ZNF80|pc|chr3:114235721:114237578:-	0	-
#Deleted in new
chr3	114276912	114276989	ENSG00000181847.11|TIGIT|pc|chr3:114276912:114276989:+	0	+
#Deleted in new
chr3	114307574	114307667	ENSG00000181847.11|TIGIT|pc|chr3:114307574:114307667:+	0	+
#Deleted in new
chr3	114357167	114357227	ENSG00000241560.5|ZBTB20-AS1|lncRNA|chr3:114357167:114357227:+	0	+
#Deleted in new
chr3	114599250	114599303	ENSG00000181722.16|ZBTB20|pc|chr3:114599250:114599303:-	0	-
#Deleted in new
chr3	114599250	114599346	ENSG00000181722.16|ZBTB20|pc|chr3:114599250:114599346:-	0	-
#Deleted in new
chr3	114791684	114792177	ENSG00000181722.16|ZBTB20|pc|chr3:114791684:114792177:-	0	-
#Partially deleted in new
chr3	114876344	114876514	ENSG00000239946.1|ZBTB20-AS3|lncRNA|chr3:114876344:114876514:+	0	+
#Deleted in new
chr3	115027455	115027574	ENSG00000181722.16|ZBTB20|pc|chr3:115027455:115027574:-	0	-
#Deleted in new
chr3	115102555	115103061	ENSG00000242767.1|ZBTB20-AS4|lncRNA|chr3:115102555:115103061:+	0	+
#Deleted in new
chr3	11604323	11604581	ENSG00000144560.14|VGLL4|pc|chr3:11604323:11604581:-	0	-
#Deleted in new
chr3	11607183	11607400	ENSG00000271716.1|AC022001.2|lncRNA|chr3:11607183:11607400:+	0	+
#Deleted in new
chr3	11611601	11612197	ENSG00000272483.1|AC022001.3|lncRNA|chr3:11611601:11612197:+	0	+
#Deleted in new
chr3	11612588	11612667	ENSG00000144560.14|VGLL4|pc|chr3:11612588:11612667:-	0	-
#Deleted in new
chr3	11627315	11627406	ENSG00000144560.14|VGLL4|pc|chr3:11627315:11627406:-	0	-
#Deleted in new
chr3	11633116	11633671	ENSG00000144560.14|VGLL4|pc|chr3:11633116:11633671:-	0	-
#Deleted in new
chr3	116360023	116360093	ENSG00000240922.1|LSAMP-AS1|lncRNA|chr3:116360023:116360093:+	0	+
#Deleted in new
chr3	116714038	116714150	ENSG00000243197.7|TUSC7|lncRNA|chr3:116714038:116714150:+	0	+
#Deleted in new
chr3	116921430	116921560	ENSG00000242385.1|LINC00901|lncRNA|chr3:116921430:116921560:+	0	+
#Deleted in new
chr3	11693044	11693163	ENSG00000144560.14|VGLL4|pc|chr3:11693044:11693163:-	0	-
#Deleted in new
chr3	11699545	11699639	ENSG00000144560.14|VGLL4|pc|chr3:11699545:11699639:-	0	-
#Deleted in new
chr3	11702695	11702724	ENSG00000144560.14|VGLL4|pc|chr3:11702695:11702724:-	0	-
#Deleted in new
chr3	117139200	117139389	ENSG00000185565.11|LSAMP|pc|chr3:117139200:117139389:-	0	-
#Deleted in new
chr3	11721798	11721933	ENSG00000144560.14|VGLL4|pc|chr3:11721798:11721933:-	0	-
#Deleted in new
chr3	11721835	11721933	ENSG00000144560.14|VGLL4|pc|chr3:11721835:11721933:-	0	-
#Deleted in new
chr3	11724822	11724979	ENSG00000144560.14|VGLL4|pc|chr3:11724822:11724979:-	0	-
#Deleted in new
chr3	117689954	117690075	ENSG00000241213.1|LINC02024|lncRNA|chr3:117689954:117690075:-	0	-
#Deleted in new
chr3	117689954	117690078	ENSG00000241213.1|LINC02024|lncRNA|chr3:117689954:117690078:-	0	-
#Deleted in new
chr3	118074523	118074623	ENSG00000243276.5|AC068633.1|lncRNA|chr3:118074523:118074623:-	0	-
#Deleted in new
chr3	118087359	118087500	ENSG00000243276.5|AC068633.1|lncRNA|chr3:118087359:118087500:-	0	-
#Deleted in new
chr3	11810775	11810897	ENSG00000144559.10|TAMM41|pc|chr3:11810775:11810897:-	0	-
#Deleted in new
chr3	11810775	11811559	ENSG00000144559.10|TAMM41|pc|chr3:11810775:11811559:-	0	-
#Deleted in new
chr3	11826717	11826805	ENSG00000144559.10|TAMM41|pc|chr3:11826717:11826805:-	0	-
#Deleted in new
chr3	11830721	11830874	ENSG00000144559.10|TAMM41|pc|chr3:11830721:11830874:-	0	-
#Partially deleted in new
chr3	118947048	118948241	ENSG00000239877.2|IGSF11-AS1|lncRNA|chr3:118947048:118948241:+	0	+
#Deleted in new
chr3	118948319	118948384	ENSG00000144847.12|IGSF11|pc|chr3:118948319:118948384:-	0	-
#Deleted in new
chr3	118949228	118949318	ENSG00000144847.12|IGSF11|pc|chr3:118949228:118949318:-	0	-
#Deleted in new
chr3	118981790	118981940	ENSG00000144847.12|IGSF11|pc|chr3:118981790:118981940:-	0	-
#Deleted in new
chr3	119105143	119105205	ENSG00000144847.12|IGSF11|pc|chr3:119105143:119105205:-	0	-
#Deleted in new
chr3	119105143	119105221	ENSG00000144847.12|IGSF11|pc|chr3:119105143:119105221:-	0	-
#Deleted in new
chr3	119112649	119112778	ENSG00000144847.12|IGSF11|pc|chr3:119112649:119112778:-	0	-
#Deleted in new
chr3	119112673	119112778	ENSG00000144847.12|IGSF11|pc|chr3:119112673:119112778:-	0	-
#Deleted in new
chr3	119175997	119176109	ENSG00000114638.7|UPK1B|pc|chr3:119175997:119176109:+	0	+
#Deleted in new
chr3	119226485	119226681	ENSG00000240254.1|B4GALT4-AS1|lncRNA|chr3:119226485:119226681:+	0	+
#Deleted in new
chr3	119232416	119232521	ENSG00000121578.12|B4GALT4|pc|chr3:119232416:119232521:-	0	-
#Deleted in new
chr3	119233006	119233153	ENSG00000121578.12|B4GALT4|pc|chr3:119233006:119233153:-	0	-
#Deleted in new
chr3	119236152	119236251	ENSG00000121578.12|B4GALT4|pc|chr3:119236152:119236251:-	0	-
#Deleted in new
chr3	119236214	119236251	ENSG00000121578.12|B4GALT4|pc|chr3:119236214:119236251:-	0	-
#Partially deleted in new
chr3	119236852	119237070	ENSG00000121578.12|B4GALT4|pc|chr3:119236852:119237070:-	0	-
#Partially deleted in new
chr3	119236852	119237071	ENSG00000121578.12|B4GALT4|pc|chr3:119236852:119237071:-	0	-
#Partially deleted in new
chr3	119451208	119451317	ENSG00000176142.12|TMEM39A|pc|chr3:119451208:119451317:-	0	-
#Partially deleted in new
chr3	119527463	119527841	ENSG00000121594.11|CD80|pc|chr3:119527463:119527841:-	0	-
#Deleted in new
chr3	119527732	119527841	ENSG00000121594.11|CD80|pc|chr3:119527732:119527841:-	0	-
#Deleted in new
chr3	119527770	119527841	ENSG00000121594.11|CD80|pc|chr3:119527770:119527841:-	0	-
#Partially deleted in new
chr3	119559439	119559556	ENSG00000121594.11|CD80|pc|chr3:119559439:119559556:-	0	-
#Partially deleted in new
chr3	119559439	119559602	ENSG00000121594.11|CD80|pc|chr3:119559439:119559602:-	0	-
#Deleted in new
chr3	119579211	119579650	ENSG00000272967.1|AC073352.2|lncRNA|chr3:119579211:119579650:-	0	-
#Deleted in new
chr3	119579432	119579851	ENSG00000144843.11|ADPRH|pc|chr3:119579432:119579851:+	0	+
#Deleted in new
chr3	119579463	119579851	ENSG00000144843.11|ADPRH|pc|chr3:119579463:119579851:+	0	+
#Deleted in new
chr3	119579527	119579851	ENSG00000144843.11|ADPRH|pc|chr3:119579527:119579851:+	0	+
#Deleted in new
chr3	119579589	119579851	ENSG00000144843.11|ADPRH|pc|chr3:119579589:119579851:+	0	+
#Deleted in new
chr3	119579675	119579851	ENSG00000144843.11|ADPRH|pc|chr3:119579675:119579851:+	0	+
#Deleted in new
chr3	119598584	119598626	ENSG00000144837.8|PLA1A|pc|chr3:119598584:119598626:+	0	+
#Deleted in new
chr3	119643366	119643449	ENSG00000121577.13|POPDC2|pc|chr3:119643366:119643449:-	0	-
#Deleted in new
chr3	119665250	119665324	ENSG00000121577.13|POPDC2|pc|chr3:119665250:119665324:-	0	-
#Partially deleted in new
chr3	119674378	119674788	ENSG00000138495.6|COX17|pc|chr3:119674378:119674788:-	0	-
#Deleted in new
chr3	119674672	119674788	ENSG00000138495.6|COX17|pc|chr3:119674672:119674788:-	0	-
#Deleted in new
chr3	119713140	119713262	ENSG00000183833.16|MAATS1|pc|chr3:119713140:119713262:+	0	+
#Deleted in new
chr3	119752300	119752376	ENSG00000183833.16|MAATS1|pc|chr3:119752300:119752376:+	0	+
#Deleted in new
chr3	119765051	119765240	ENSG00000183833.16|MAATS1|pc|chr3:119765051:119765240:+	0	+
#Deleted in new
chr3	119765051	119765241	ENSG00000183833.16|MAATS1|pc|chr3:119765051:119765241:+	0	+
#Deleted in new
chr3	119765051	119765276	ENSG00000183833.16|MAATS1|pc|chr3:119765051:119765276:+	0	+
#Deleted in new
chr3	119765051	119765286	ENSG00000183833.16|MAATS1|pc|chr3:119765051:119765286:+	0	+
#Deleted in new
chr3	119765051	119765346	ENSG00000183833.16|MAATS1|pc|chr3:119765051:119765346:+	0	+
#Deleted in new
chr3	119765051	119765586	ENSG00000183833.16|MAATS1|pc|chr3:119765051:119765586:+	0	+
#Deleted in new
chr3	119765051	119765696	ENSG00000183833.16|MAATS1|pc|chr3:119765051:119765696:+	0	+
#Deleted in new
chr3	119765051	119767102	ENSG00000183833.16|MAATS1|pc|chr3:119765051:119767102:+	0	+
#Partially deleted in new
chr3	120098391	120098787	ENSG00000242622.1|AC092910.3|lncRNA|chr3:120098391:120098787:+	0	+
#Deleted in new
chr3	120104775	120104845	ENSG00000242622.1|AC092910.3|lncRNA|chr3:120104775:120104845:+	0	+
#Deleted in new
chr3	120133574	120133672	ENSG00000242622.1|AC092910.3|lncRNA|chr3:120133574:120133672:+	0	+
#Deleted in new
chr3	120136327	120136783	ENSG00000242622.1|AC092910.3|lncRNA|chr3:120136327:120136783:+	0	+
#Partially deleted in new
chr3	120242859	120243776	ENSG00000175697.10|GPR156|pc|chr3:120242859:120243776:-	0	-
#Deleted in new
chr3	120441267	120441404	ENSG00000163430.11|FSTL1|pc|chr3:120441267:120441404:-	0	-
#Partially deleted in new
chr3	120633332	120633590	ENSG00000113924.11|HGD|pc|chr3:120633332:120633590:-	0	-
#Partially deleted in new
chr3	120633333	120633590	ENSG00000113924.11|HGD|pc|chr3:120633333:120633590:-	0	-
#Deleted in new
chr3	120738526	120738667	ENSG00000144840.8|RABL3|pc|chr3:120738526:120738667:-	0	-
#Deleted in new
chr3	120836268	120836360	ENSG00000243593.1|LINC02049|lncRNA|chr3:120836268:120836360:-	0	-
#Partially deleted in new
chr3	121157503	121158968	ENSG00000145087.12|STXBP5L|pc|chr3:121157503:121158968:+	0	+
#Partially deleted in new
chr3	121521570	121521893	ENSG00000051341.13|POLQ|pc|chr3:121521570:121521893:-	0	-
#Deleted in new
chr3	121570703	121570816	ENSG00000186103.3|ARGFX|pc|chr3:121570703:121570816:+	0	+
#Deleted in new
chr3	121576783	121576900	ENSG00000186103.3|ARGFX|pc|chr3:121576783:121576900:+	0	+
#Deleted in new
chr3	121668313	121668508	ENSG00000173230.15|GOLGB1|pc|chr3:121668313:121668508:-	0	-
#Partially deleted in new
chr3	122366452	122366762	ENSG00000160124.9|CCDC58|pc|chr3:122366452:122366762:-	0	-
#Deleted in new
chr3	122401375	122401535	ENSG00000114023.15|FAM162A|pc|chr3:122401375:122401535:+	0	+
#Partially deleted in new
chr3	122407280	122407964	ENSG00000114023.15|FAM162A|pc|chr3:122407280:122407964:+	0	+
#Deleted in new
chr3	122416206	122416250	ENSG00000272758.5|AC083798.2|lncRNA|chr3:122416206:122416250:+	0	+
#Deleted in new
chr3	122416218	122416250	ENSG00000272758.5|AC083798.2|lncRNA|chr3:122416218:122416250:+	0	+
#Deleted in new
chr3	122416224	122416250	ENSG00000272758.5|AC083798.2|lncRNA|chr3:122416224:122416250:+	0	+
#Deleted in new
chr3	122432466	122432521	ENSG00000272758.5|AC083798.2|lncRNA|chr3:122432466:122432521:+	0	+
#Deleted in new
chr3	122432785	122433262	ENSG00000272758.5|AC083798.2|lncRNA|chr3:122432785:122433262:+	0	+
#Deleted in new
chr3	122442726	122443180	ENSG00000272758.5|AC083798.2|lncRNA|chr3:122442726:122443180:+	0	+
#Partially deleted in new
chr3	122531772	122536342	ENSG00000138496.16|PARP9|pc|chr3:122531772:122536342:-	0	-
#Deleted in new
chr3	122594523	122594561	ENSG00000173200.12|PARP15|pc|chr3:122594523:122594561:+	0	+
#Deleted in new
chr3	122605935	122606055	ENSG00000173200.12|PARP15|pc|chr3:122605935:122606055:+	0	+
#Deleted in new
chr3	122615285	122615320	ENSG00000173200.12|PARP15|pc|chr3:122615285:122615320:+	0	+
#Duplicated in new
chr3	122615778	122615857	ENSG00000173200.12|PARP15|pc|chr3:122615778:122615857:+	0	+
#Deleted in new
chr3	122632085	122632173	ENSG00000173200.12|PARP15|pc|chr3:122632085:122632173:+	0	+
#Deleted in new
chr3	122632085	122632219	ENSG00000173200.12|PARP15|pc|chr3:122632085:122632219:+	0	+
#Partially deleted in new
chr3	122635810	122639047	ENSG00000173200.12|PARP15|pc|chr3:122635810:122639047:+	0	+
#Partially deleted in new
chr3	122720254	122721653	ENSG00000173193.13|PARP14|pc|chr3:122720254:122721653:+	0	+
#Partially deleted in new
chr3	122720254	122722647	ENSG00000173193.13|PARP14|pc|chr3:122720254:122722647:+	0	+
#Deleted in new
chr3	122720827	122720968	ENSG00000173193.13|PARP14|pc|chr3:122720827:122720968:+	0	+
#Deleted in new
chr3	122758771	122758853	ENSG00000169087.10|HSPBAP1|pc|chr3:122758771:122758853:-	0	-
#Deleted in new
chr3	122761533	122761972	ENSG00000169087.10|HSPBAP1|pc|chr3:122761533:122761972:-	0	-
#Partially deleted in new
chr3	12287367	12287675	ENSG00000132170.19|PPARG|pc|chr3:12287367:12287675:+	0	+
#Partially deleted in new
chr3	12287387	12287675	ENSG00000132170.19|PPARG|pc|chr3:12287387:12287675:+	0	+
#Partially deleted in new
chr3	122961139	122961301	ENSG00000082684.14|SEMA5B|pc|chr3:122961139:122961301:-	0	-
#Deleted in new
chr3	123144675	123144829	ENSG00000065485.19|PDIA5|pc|chr3:123144675:123144829:+	0	+
#Deleted in new
chr3	123204715	123204784	ENSG00000121542.11|SEC22A|pc|chr3:123204715:123204784:+	0	+
#Deleted in new
chr3	123204715	123204813	ENSG00000121542.11|SEC22A|pc|chr3:123204715:123204813:+	0	+
#Partially deleted in new
chr3	123208321	123209399	ENSG00000121542.11|SEC22A|pc|chr3:123208321:123209399:+	0	+
#Partially deleted in new
chr3	123243811	123243950	ENSG00000121542.11|SEC22A|pc|chr3:123243811:123243950:+	0	+
#Partially deleted in new
chr3	123277352	123277904	ENSG00000273454.1|AC112503.2|lncRNA|chr3:123277352:123277904:+	0	+
#Partially deleted in new
chr3	123490819	123491184	ENSG00000206527.9|HACD2|pc|chr3:123490819:123491184:-	0	-
#Deleted in new
chr3	123835867	123835935	ENSG00000065534.18|MYLK|pc|chr3:123835867:123835935:-	0	-
#Partially deleted in new
chr3	123897304	123897613	ENSG00000175455.14|CCDC14|pc|chr3:123897304:123897613:-	0	-
#Deleted in new
chr3	123981378	123981424	ENSG00000065371.17|ROPN1|pc|chr3:123981378:123981424:-	0	-
#Deleted in new
chr3	12399347	12399490	ENSG00000132170.19|PPARG|pc|chr3:12399347:12399490:+	0	+
#Deleted in new
chr3	124099360	124099403	ENSG00000160145.15|KALRN|pc|chr3:124099360:124099403:+	0	+
#Deleted in new
chr3	124100327	124100536	ENSG00000160145.15|KALRN|pc|chr3:124100327:124100536:+	0	+
#Deleted in new
chr3	124731505	124731550	ENSG00000114491.13|UMPS|pc|chr3:124731505:124731550:+	0	+
#Deleted in new
chr3	124731505	124731604	ENSG00000114491.13|UMPS|pc|chr3:124731505:124731604:+	0	+
#Deleted in new
chr3	124737194	124737222	ENSG00000114491.13|UMPS|pc|chr3:124737194:124737222:+	0	+
#Split in new
chr3	124743914	124749273	ENSG00000114491.13|UMPS|pc|chr3:124743914:124749273:+	0	+
#Partially deleted in new
chr3	12484490	12484628	ENSG00000154743.17|TSEN2|pc|chr3:12484490:12484628:+	0	+
#Partially deleted in new
chr3	12484510	12484880	ENSG00000154743.17|TSEN2|pc|chr3:12484510:12484880:+	0	+
#Deleted in new
chr3	124857231	124857313	ENSG00000082781.11|ITGB5|pc|chr3:124857231:124857313:-	0	-
#Deleted in new
chr3	124901265	124901344	ENSG00000082781.11|ITGB5|pc|chr3:124901265:124901344:-	0	-
#Partially deleted in new
chr3	124901265	124901418	ENSG00000082781.11|ITGB5|pc|chr3:124901265:124901418:-	0	-
#Partially deleted in new
chr3	124927531	124927600	ENSG00000173702.7|MUC13|pc|chr3:124927531:124927600:-	0	-
#Partially deleted in new
chr3	124927531	124927771	ENSG00000173702.7|MUC13|pc|chr3:124927531:124927771:-	0	-
#Partially deleted in new
chr3	124927531	124927993	ENSG00000173702.7|MUC13|pc|chr3:124927531:124927993:-	0	-
#Partially deleted in new
chr3	124927898	124927993	ENSG00000173702.7|MUC13|pc|chr3:124927898:124927993:-	0	-
#Deleted in new
chr3	124939394	124939520	ENSG00000173702.7|MUC13|pc|chr3:124939394:124939520:-	0	-
#Deleted in new
chr3	124940101	124940241	ENSG00000173702.7|MUC13|pc|chr3:124940101:124940241:-	0	-
#Deleted in new
chr3	124953779	124953819	ENSG00000173702.7|MUC13|pc|chr3:124953779:124953819:-	0	-
#Deleted in new
chr3	124971042	124971148	ENSG00000173706.12|HEG1|pc|chr3:124971042:124971148:-	0	-
#Deleted in new
chr3	124971993	124972156	ENSG00000173706.12|HEG1|pc|chr3:124971993:124972156:-	0	-
#Partially deleted in new
chr3	125110188	125110718	ENSG00000221955.10|SLC12A8|pc|chr3:125110188:125110718:-	0	-
#Deleted in new
chr3	125123529	125123599	ENSG00000221955.10|SLC12A8|pc|chr3:125123529:125123599:-	0	-
#Deleted in new
chr3	125123529	125123606	ENSG00000221955.10|SLC12A8|pc|chr3:125123529:125123606:-	0	-
#Deleted in new
chr3	12514933	12515016	ENSG00000225526.4|MKRN2OS|pc|chr3:12514933:12515016:-	0	-
#Deleted in new
chr3	125151148	125151215	ENSG00000221955.10|SLC12A8|pc|chr3:125151148:125151215:-	0	-
#Deleted in new
chr3	125154808	125155065	ENSG00000221955.10|SLC12A8|pc|chr3:125154808:125155065:-	0	-
#Deleted in new
chr3	125206667	125206845	ENSG00000221955.10|SLC12A8|pc|chr3:125206667:125206845:-	0	-
#Deleted in new
chr3	125212699	125212765	ENSG00000221955.10|SLC12A8|pc|chr3:125212699:125212765:-	0	-
#Deleted in new
chr3	125212699	125212864	ENSG00000221955.10|SLC12A8|pc|chr3:125212699:125212864:-	0	-
#Partially deleted in new
chr3	12529761	12531013	ENSG00000154743.17|TSEN2|pc|chr3:12529761:12531013:+	0	+
#Partially deleted in new
chr3	12529761	12531659	ENSG00000154743.17|TSEN2|pc|chr3:12529761:12531659:+	0	+
#Deleted in new
chr3	12530847	12530941	ENSG00000154743.17|TSEN2|pc|chr3:12530847:12530941:+	0	+
#Deleted in new
chr3	125314936	125315053	ENSG00000163848.19|ZNF148|pc|chr3:125314936:125315053:-	0	-
#Partially deleted in new
chr3	12532661	12533659	ENSG00000154743.17|TSEN2|pc|chr3:12532661:12533659:+	0	+
#Deleted in new
chr3	125338821	125338911	ENSG00000163848.19|ZNF148|pc|chr3:125338821:125338911:-	0	-
#Partially deleted in new
chr3	125356976	125357280	ENSG00000163848.19|ZNF148|pc|chr3:125356976:125357280:-	0	-
#Partially deleted in new
chr3	12538801	12539288	ENSG00000154743.17|TSEN2|pc|chr3:12538801:12539288:+	0	+
#Partially deleted in new
chr3	12539160	12539620	ENSG00000154743.17|TSEN2|pc|chr3:12539160:12539620:+	0	+
#Partially deleted in new
chr3	12539160	12539623	ENSG00000154743.17|TSEN2|pc|chr3:12539160:12539623:+	0	+
#Deleted in new
chr3	125449069	125449255	ENSG00000114520.10|SNX4|pc|chr3:125449069:125449255:-	0	-
#Deleted in new
chr3	12553767	12554134	ENSG00000225526.4|MKRN2OS|pc|chr3:12553767:12554134:-	0	-
#Deleted in new
chr3	12560756	12561020	ENSG00000225526.4|MKRN2OS|pc|chr3:12560756:12561020:-	0	-
#Deleted in new
chr3	12560756	12561059	ENSG00000225526.4|MKRN2OS|pc|chr3:12560756:12561059:-	0	-
#Deleted in new
chr3	125797774	125797953	ENSG00000272840.1|AC092902.3|lncRNA|chr3:125797774:125797953:+	0	+
#Deleted in new
chr3	125827237	125827455	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125827237:125827455:-	0	-
#Deleted in new
chr3	125827256	125827455	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125827256:125827455:-	0	-
#Deleted in new
chr3	125827262	125827455	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125827262:125827455:-	0	-
#Deleted in new
chr3	125827376	125827455	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125827376:125827455:-	0	-
#Deleted in new
chr3	125827393	125827455	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125827393:125827455:-	0	-
#Deleted in new
chr3	125840310	125841290	ENSG00000284624.1|AC092902.5|lncRNA|chr3:125840310:125841290:+	0	+
#Deleted in new
chr3	125850119	125852936	ENSG00000284624.1|AC092902.5|lncRNA|chr3:125850119:125852936:+	0	+
#Deleted in new
chr3	125853325	125853647	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125853325:125853647:-	0	-
#Deleted in new
chr3	125860666	125861121	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125860666:125861121:-	0	-
#Deleted in new
chr3	125860814	125861121	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125860814:125861121:-	0	-
#Deleted in new
chr3	125861703	125861799	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125861703:125861799:-	0	-
#Deleted in new
chr3	125861703	125861800	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125861703:125861800:-	0	-
#Deleted in new
chr3	125861703	125861821	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125861703:125861821:-	0	-
#Deleted in new
chr3	125862573	125863113	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125862573:125863113:-	0	-
#Deleted in new
chr3	125862815	125863073	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125862815:125863073:-	0	-
#Deleted in new
chr3	125862880	125863113	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125862880:125863113:-	0	-
#Deleted in new
chr3	125866082	125866202	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125866082:125866202:-	0	-
#Deleted in new
chr3	125870710	125870817	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125870710:125870817:-	0	-
#Deleted in new
chr3	125872072	125872253	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125872072:125872253:-	0	-
#Deleted in new
chr3	125873740	125873845	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125873740:125873845:-	0	-
#Deleted in new
chr3	125873740	125873848	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125873740:125873848:-	0	-
#Deleted in new
chr3	125875073	125875166	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125875073:125875166:-	0	-
#Partially deleted in new
chr3	12587978	12590974	ENSG00000132155.11|RAF1|pc|chr3:12587978:12590974:-	0	-
#Deleted in new
chr3	125885879	125885968	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125885879:125885968:-	0	-
#Deleted in new
chr3	125885879	125886077	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125885879:125886077:-	0	-
#Deleted in new
chr3	125885879	125887335	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125885879:125887335:-	0	-
#Deleted in new
chr3	125886835	125887065	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125886835:125887065:-	0	-
#Deleted in new
chr3	125886835	125887226	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125886835:125887226:-	0	-
#Deleted in new
chr3	125886864	125887065	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125886864:125887065:-	0	-
#Deleted in new
chr3	125886914	125887065	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125886914:125887065:-	0	-
#Deleted in new
chr3	125887161	125887226	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125887161:125887226:-	0	-
#Deleted in new
chr3	125887719	125887914	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125887719:125887914:-	0	-
#Deleted in new
chr3	125888348	125888371	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125888348:125888371:-	0	-
#Deleted in new
chr3	125888348	125888539	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125888348:125888539:-	0	-
#Deleted in new
chr3	125888348	125888853	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125888348:125888853:-	0	-
#Deleted in new
chr3	125888348	125889019	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125888348:125889019:-	0	-
#Deleted in new
chr3	125888582	125888861	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125888582:125888861:-	0	-
#Deleted in new
chr3	125888582	125888921	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125888582:125888921:-	0	-
#Deleted in new
chr3	125888582	125889001	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125888582:125889001:-	0	-
#Deleted in new
chr3	125888582	125889075	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125888582:125889075:-	0	-
#Deleted in new
chr3	125888603	125888680	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125888603:125888680:-	0	-
#Deleted in new
chr3	125889045	125889075	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125889045:125889075:-	0	-
#Deleted in new
chr3	125904827	125905097	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125904827:125905097:-	0	-
#Deleted in new
chr3	125904960	125905101	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125904960:125905101:-	0	-
#Deleted in new
chr3	125908004	125908254	ENSG00000248787.1|AC092903.2|lncRNA|chr3:125908004:125908254:-	0	-
#Deleted in new
chr3	125908436	125908560	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125908436:125908560:-	0	-
#Deleted in new
chr3	125908436	125908560	ENSG00000248787.1|AC092903.2|lncRNA|chr3:125908436:125908560:-	0	-
#Deleted in new
chr3	125908781	125908843	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125908781:125908843:-	0	-
#Deleted in new
chr3	125908781	125908874	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125908781:125908874:-	0	-
#Deleted in new
chr3	125910219	125910272	ENSG00000248787.1|AC092903.2|lncRNA|chr3:125910219:125910272:-	0	-
#Deleted in new
chr3	125910219	125910323	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125910219:125910323:-	0	-
#Deleted in new
chr3	125910219	125910489	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125910219:125910489:-	0	-
#Partially deleted in new
chr3	125915219	125915375	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125915219:125915375:-	0	-
#Partially deleted in new
chr3	125915219	125915475	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125915219:125915475:-	0	-
#Partially deleted in new
chr3	125915219	125915883	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125915219:125915883:-	0	-
#Deleted in new
chr3	125915652	125915669	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125915652:125915669:-	0	-
#Deleted in new
chr3	125915652	125915729	ENSG00000241288.7|AC092902.2|lncRNA|chr3:125915652:125915729:-	0	-
#Deleted in new
chr3	125936897	125937039	ENSG00000189366.9|ALG1L|pc|chr3:125936897:125937039:-	0	-
#Deleted in new
chr3	125971116	125971162	ENSG00000114547.9|ROPN1B|pc|chr3:125971116:125971162:+	0	+
#Deleted in new
chr3	126024802	126024905	ENSG00000114544.16|SLC41A3|pc|chr3:126024802:126024905:-	0	-
#Deleted in new
chr3	126070200	126070416	ENSG00000114544.16|SLC41A3|pc|chr3:126070200:126070416:-	0	-
#Deleted in new
chr3	126073152	126073269	ENSG00000114544.16|SLC41A3|pc|chr3:126073152:126073269:-	0	-
#Deleted in new
chr3	126078973	126079034	ENSG00000114544.16|SLC41A3|pc|chr3:126078973:126079034:-	0	-
#Deleted in new
chr3	126083875	126083922	ENSG00000114544.16|SLC41A3|pc|chr3:126083875:126083922:-	0	-
#Deleted in new
chr3	126083928	126084023	ENSG00000114544.16|SLC41A3|pc|chr3:126083928:126084023:-	0	-
#Deleted in new
chr3	126084053	126084096	ENSG00000114544.16|SLC41A3|pc|chr3:126084053:126084096:-	0	-
#Deleted in new
chr3	126084092	126084109	ENSG00000114544.16|SLC41A3|pc|chr3:126084092:126084109:-	0	-
#Deleted in new
chr3	126084092	126084123	ENSG00000114544.16|SLC41A3|pc|chr3:126084092:126084123:-	0	-
#Deleted in new
chr3	126084092	126084124	ENSG00000114544.16|SLC41A3|pc|chr3:126084092:126084124:-	0	-
#Deleted in new
chr3	126084092	126084169	ENSG00000114544.16|SLC41A3|pc|chr3:126084092:126084169:-	0	-
#Deleted in new
chr3	126084092	126084304	ENSG00000114544.16|SLC41A3|pc|chr3:126084092:126084304:-	0	-
#Deleted in new
chr3	126084219	126084452	ENSG00000250012.1|AC079848.1|lncRNA|chr3:126084219:126084452:+	0	+
#Deleted in new
chr3	126084326	126084452	ENSG00000250012.1|AC079848.1|lncRNA|chr3:126084326:126084452:+	0	+
#Deleted in new
chr3	126085358	126085452	ENSG00000250012.1|AC079848.1|lncRNA|chr3:126085358:126085452:+	0	+
#Deleted in new
chr3	126092564	126092721	ENSG00000250012.1|AC079848.1|lncRNA|chr3:126092564:126092721:+	0	+
#Deleted in new
chr3	126095188	126095349	ENSG00000250012.1|AC079848.1|lncRNA|chr3:126095188:126095349:+	0	+
#Deleted in new
chr3	126101428	126101555	ENSG00000114544.16|SLC41A3|pc|chr3:126101428:126101555:-	0	-
#Deleted in new
chr3	126101428	126101557	ENSG00000114544.16|SLC41A3|pc|chr3:126101428:126101557:-	0	-
#Deleted in new
chr3	126101428	126101561	ENSG00000114544.16|SLC41A3|pc|chr3:126101428:126101561:-	0	-
#Deleted in new
chr3	126104610	126104692	ENSG00000250218.1|ALDH1L1-AS1|lncRNA|chr3:126104610:126104692:+	0	+
#Deleted in new
chr3	126107883	126108069	ENSG00000250218.1|ALDH1L1-AS1|lncRNA|chr3:126107883:126108069:+	0	+
#Partially deleted in new
chr3	126128389	126130293	ENSG00000144908.13|ALDH1L1|pc|chr3:126128389:126130293:-	0	-
#Partially deleted in new
chr3	126150405	126150956	ENSG00000144908.13|ALDH1L1|pc|chr3:126150405:126150956:-	0	-
#Deleted in new
chr3	126156524	126156712	ENSG00000144908.13|ALDH1L1|pc|chr3:126156524:126156712:-	0	-
#Partially deleted in new
chr3	126180075	126180365	ENSG00000246022.2|ALDH1L1-AS2|lncRNA|chr3:126180075:126180365:+	0	+
#Deleted in new
chr3	126180799	126180994	ENSG00000144908.13|ALDH1L1|pc|chr3:126180799:126180994:-	0	-
#Deleted in new
chr3	126180961	126181186	ENSG00000144908.13|ALDH1L1|pc|chr3:126180961:126181186:-	0	-
#Deleted in new
chr3	126181467	126181526	ENSG00000144908.13|ALDH1L1|pc|chr3:126181467:126181526:-	0	-
#Deleted in new
chr3	126197734	126197941	ENSG00000144908.13|ALDH1L1|pc|chr3:126197734:126197941:-	0	-
#Deleted in new
chr3	126197734	126197994	ENSG00000144908.13|ALDH1L1|pc|chr3:126197734:126197994:-	0	-
#Deleted in new
chr3	126207254	126207544	ENSG00000246022.2|ALDH1L1-AS2|lncRNA|chr3:126207254:126207544:+	0	+
#Deleted in new
chr3	126208021	126208066	ENSG00000246022.2|ALDH1L1-AS2|lncRNA|chr3:126208021:126208066:+	0	+
#Deleted in new
chr3	126208177	126208237	ENSG00000246022.2|ALDH1L1-AS2|lncRNA|chr3:126208177:126208237:+	0	+
#Deleted in new
chr3	126208325	126208501	ENSG00000246022.2|ALDH1L1-AS2|lncRNA|chr3:126208325:126208501:+	0	+
#Deleted in new
chr3	126288012	126288123	ENSG00000250934.1|AC016924.1|lncRNA|chr3:126288012:126288123:+	0	+
#Deleted in new
chr3	126288012	126288417	ENSG00000250934.1|AC016924.1|lncRNA|chr3:126288012:126288417:+	0	+
#Deleted in new
chr3	126288866	126288937	ENSG00000251448.1|AC063919.1|lncRNA|chr3:126288866:126288937:-	0	-
#Deleted in new
chr3	126290680	126290757	ENSG00000251448.1|AC063919.1|lncRNA|chr3:126290680:126290757:-	0	-
#Deleted in new
chr3	126290952	126291279	ENSG00000250934.1|AC016924.1|lncRNA|chr3:126290952:126291279:+	0	+
#Deleted in new
chr3	126293918	126294024	ENSG00000251448.1|AC063919.1|lncRNA|chr3:126293918:126294024:-	0	-
#Deleted in new
chr3	126393482	126393653	ENSG00000249833.5|CCDC37-AS1|lncRNA|chr3:126393482:126393653:-	0	-
#Deleted in new
chr3	126394298	126394397	ENSG00000249833.5|CCDC37-AS1|lncRNA|chr3:126394298:126394397:-	0	-
#Partially deleted in new
chr3	126394298	126394851	ENSG00000249833.5|CCDC37-AS1|lncRNA|chr3:126394298:126394851:-	0	-
#Deleted in new
chr3	126394475	126394588	ENSG00000249833.5|CCDC37-AS1|lncRNA|chr3:126394475:126394588:-	0	-
#Deleted in new
chr3	126416771	126416863	ENSG00000163885.11|CFAP100|pc|chr3:126416771:126416863:+	0	+
#Partially deleted in new
chr3	126418059	126418525	ENSG00000163885.11|CFAP100|pc|chr3:126418059:126418525:+	0	+
#Deleted in new
chr3	126420629	126420850	ENSG00000163885.11|CFAP100|pc|chr3:126420629:126420850:+	0	+
#Partially deleted in new
chr3	126481280	126482485	ENSG00000159650.8|UROC1|pc|chr3:126481280:126482485:-	0	-
#Deleted in new
chr3	126501800	126501948	ENSG00000159650.8|UROC1|pc|chr3:126501800:126501948:-	0	-
#Partially deleted in new
chr3	126526998	126527873	ENSG00000180697.8|C3orf22|pc|chr3:126526998:126527873:-	0	-
#Deleted in new
chr3	126529131	126529372	ENSG00000180697.8|C3orf22|pc|chr3:126529131:126529372:-	0	-
#Deleted in new
chr3	126571778	126572045	ENSG00000283374.1|TXNRD3NB|pc|chr3:126571778:126572045:-	0	-
#Deleted in new
chr3	126571781	126572045	ENSG00000283374.1|TXNRD3NB|pc|chr3:126571781:126572045:-	0	-
#Deleted in new
chr3	126571788	126572045	ENSG00000206483.5|TXNRD3NB|pc|chr3:126571788:126572045:-	0	-
#Deleted in new
chr3	126572155	126572636	ENSG00000206483.5|TXNRD3NB|pc|chr3:126572155:126572636:-	0	-
#Deleted in new
chr3	126572155	126572642	ENSG00000283374.1|TXNRD3NB|pc|chr3:126572155:126572642:-	0	-
#Deleted in new
chr3	126609140	126609245	ENSG00000197763.14|TXNRD3|pc|chr3:126609140:126609245:-	0	-
#Deleted in new
chr3	126949257	126949879	ENSG00000159685.10|CHCHD6|pc|chr3:126949257:126949879:+	0	+
#Deleted in new
chr3	126953024	126953184	ENSG00000159685.10|CHCHD6|pc|chr3:126953024:126953184:+	0	+
#Partially deleted in new
chr3	126957415	126957933	ENSG00000159685.10|CHCHD6|pc|chr3:126957415:126957933:+	0	+
#Partially deleted in new
chr3	127026384	127028086	ENSG00000114554.11|PLXNA1|pc|chr3:127026384:127028086:+	0	+
#Deleted in new
chr3	127193130	127193275	ENSG00000214324.5|C3orf56|pc|chr3:127193130:127193275:+	0	+
#Deleted in new
chr3	127196590	127198185	ENSG00000214324.5|C3orf56|pc|chr3:127196590:127198185:+	0	+
#Deleted in new
chr3	127322306	127322727	ENSG00000244215.1|LINC02016|lncRNA|chr3:127322306:127322727:-	0	-
#Deleted in new
chr3	127355889	127355940	ENSG00000244215.1|LINC02016|lncRNA|chr3:127355889:127355940:-	0	-
#Deleted in new
chr3	127356250	127356283	ENSG00000244215.1|LINC02016|lncRNA|chr3:127356250:127356283:-	0	-
#Deleted in new
chr3	127390445	127390670	ENSG00000244215.1|LINC02016|lncRNA|chr3:127390445:127390670:-	0	-
#Deleted in new
chr3	12741243	12741356	ENSG00000088726.15|TMEM40|pc|chr3:12741243:12741356:-	0	-
#Deleted in new
chr3	127480689	127481374	ENSG00000239921.3|LINC01471|lncRNA|chr3:127480689:127481374:-	0	-
#Deleted in new
chr3	127485560	127485699	ENSG00000239921.3|LINC01471|lncRNA|chr3:127485560:127485699:-	0	-
#Deleted in new
chr3	127489552	127489584	ENSG00000240562.1|AC016968.1|lncRNA|chr3:127489552:127489584:+	0	+
#Deleted in new
chr3	127490076	127490200	ENSG00000240562.1|AC016968.1|lncRNA|chr3:127490076:127490200:+	0	+
#Deleted in new
chr3	127490357	127490787	ENSG00000240562.1|AC016968.1|lncRNA|chr3:127490357:127490787:+	0	+
#Deleted in new
chr3	127497600	127497910	ENSG00000239921.3|LINC01471|lncRNA|chr3:127497600:127497910:-	0	-
#Deleted in new
chr3	127532384	127532435	ENSG00000239921.3|LINC01471|lncRNA|chr3:127532384:127532435:-	0	-
#Deleted in new
chr3	127532384	127532443	ENSG00000239921.3|LINC01471|lncRNA|chr3:127532384:127532443:-	0	-
#Deleted in new
chr3	127533576	127533769	ENSG00000239921.3|LINC01471|lncRNA|chr3:127533576:127533769:-	0	-
#Deleted in new
chr3	127533624	127533769	ENSG00000239921.3|LINC01471|lncRNA|chr3:127533624:127533769:-	0	-
#Deleted in new
chr3	127533634	127533769	ENSG00000239921.3|LINC01471|lncRNA|chr3:127533634:127533769:-	0	-
#Deleted in new
chr3	127534116	127534406	ENSG00000239921.3|LINC01471|lncRNA|chr3:127534116:127534406:-	0	-
#Deleted in new
chr3	127534234	127534406	ENSG00000239921.3|LINC01471|lncRNA|chr3:127534234:127534406:-	0	-
#Deleted in new
chr3	127535185	127535463	ENSG00000239921.3|LINC01471|lncRNA|chr3:127535185:127535463:-	0	-
#Deleted in new
chr3	127535185	127536812	ENSG00000239921.3|LINC01471|lncRNA|chr3:127535185:127536812:-	0	-
#Deleted in new
chr3	127536920	127536960	ENSG00000239921.3|LINC01471|lncRNA|chr3:127536920:127536960:-	0	-
#Deleted in new
chr3	127537644	127537778	ENSG00000239921.3|LINC01471|lncRNA|chr3:127537644:127537778:-	0	-
#Deleted in new
chr3	127537644	127537780	ENSG00000239921.3|LINC01471|lncRNA|chr3:127537644:127537780:-	0	-
#Deleted in new
chr3	127537672	127537778	ENSG00000239921.3|LINC01471|lncRNA|chr3:127537672:127537778:-	0	-
#Deleted in new
chr3	127537936	127538083	ENSG00000282975.1|LINC02034|lncRNA|chr3:127537936:127538083:+	0	+
#Deleted in new
chr3	127538344	127538509	ENSG00000282975.1|LINC02034|lncRNA|chr3:127538344:127538509:+	0	+
#Deleted in new
chr3	127539466	127539713	ENSG00000282975.1|LINC02034|lncRNA|chr3:127539466:127539713:+	0	+
#Deleted in new
chr3	127540284	127540485	ENSG00000282975.1|LINC02034|lncRNA|chr3:127540284:127540485:+	0	+
#Deleted in new
chr3	127588069	127588160	ENSG00000163870.14|TPRA1|pc|chr3:127588069:127588160:-	0	-
#Deleted in new
chr3	127594799	127594933	ENSG00000163870.14|TPRA1|pc|chr3:127594799:127594933:-	0	-
#Deleted in new
chr3	127595451	127595690	ENSG00000163870.14|TPRA1|pc|chr3:127595451:127595690:-	0	-
#Deleted in new
chr3	127598006	127598204	ENSG00000163870.14|TPRA1|pc|chr3:127598006:127598204:-	0	-
#Deleted in new
chr3	127598195	127598251	ENSG00000163870.14|TPRA1|pc|chr3:127598195:127598251:-	0	-
#Deleted in new
chr3	127598861	127599148	ENSG00000073111.13|MCM2|pc|chr3:127598861:127599148:+	0	+
#Deleted in new
chr3	127604250	127604285	ENSG00000073111.13|MCM2|pc|chr3:127604250:127604285:+	0	+
#Deleted in new
chr3	127610778	127610985	ENSG00000073111.13|MCM2|pc|chr3:127610778:127610985:+	0	+
#Deleted in new
chr3	127673305	127673383	ENSG00000114626.17|ABTB1|pc|chr3:127673305:127673383:+	0	+
#Deleted in new
chr3	12769250	12769457	ENSG00000088726.15|TMEM40|pc|chr3:12769250:12769457:-	0	-
#Partially deleted in new
chr3	127735704	127736357	ENSG00000074416.13|MGLL|pc|chr3:127735704:127736357:-	0	-
#Deleted in new
chr3	127799419	127799464	ENSG00000074416.13|MGLL|pc|chr3:127799419:127799464:-	0	-
#Deleted in new
chr3	128051640	128051910	ENSG00000058262.9|SEC61A1|pc|chr3:128051640:128051910:+	0	+
#Partially deleted in new
chr3	128065020	128065256	ENSG00000058262.9|SEC61A1|pc|chr3:128065020:128065256:+	0	+
#Deleted in new
chr3	128066608	128066703	ENSG00000058262.9|SEC61A1|pc|chr3:128066608:128066703:+	0	+
#Deleted in new
chr3	128068635	128068913	ENSG00000175792.11|RUVBL1|pc|chr3:128068635:128068913:-	0	-
#Deleted in new
chr3	128075809	128076079	ENSG00000239608.1|RUVBL1-AS1|lncRNA|chr3:128075809:128076079:+	0	+
#Partially deleted in new
chr3	128083601	128084075	ENSG00000175792.11|RUVBL1|pc|chr3:128083601:128084075:-	0	-
#Deleted in new
chr3	12832218	12832728	ENSG00000272263.1|AC034198.2|lncRNA|chr3:12832218:12832728:-	0	-
#Split in new
chr3	12834484	12836223	ENSG00000144713.12|RPL32|pc|chr3:12834484:12836223:-	0	-
#Split in new
chr3	12834945	12836223	ENSG00000144713.12|RPL32|pc|chr3:12834945:12836223:-	0	-
#Deleted in new
chr3	128465275	128465436	ENSG00000179407.3|DNAJB8|pc|chr3:128465275:128465436:-	0	-
#Split in new
chr3	128465275	128466968	ENSG00000179407.3|DNAJB8|pc|chr3:128465275:128466968:-	0	-
#Split in new
chr3	128466613	128467248	ENSG00000179407.3|DNAJB8|pc|chr3:128466613:128467248:-	0	-
#Deleted in new
chr3	128470867	128472317	ENSG00000242049.1|DNAJB8-AS1|lncRNA|chr3:128470867:128472317:+	0	+
#Deleted in new
chr3	128501608	128502348	ENSG00000244300.2|GATA2-AS1|lncRNA|chr3:128501608:128502348:+	0	+
#Deleted in new
chr3	128575265	128575386	ENSG00000198685.3|LINC01565|lncRNA|chr3:128575265:128575386:-	0	-
#Partially deleted in new
chr3	128626732	128627266	ENSG00000163902.11|RPN1|pc|chr3:128626732:128627266:-	0	-
#Deleted in new
chr3	128641045	128641134	ENSG00000163902.11|RPN1|pc|chr3:128641045:128641134:-	0	-
#Deleted in new
chr3	128642292	128642564	ENSG00000163902.11|RPN1|pc|chr3:128642292:128642564:-	0	-
#Partially deleted in new
chr3	128644514	128644983	ENSG00000163902.11|RPN1|pc|chr3:128644514:128644983:-	0	-
#Deleted in new
chr3	128644534	128644646	ENSG00000163902.11|RPN1|pc|chr3:128644534:128644646:-	0	-
#Deleted in new
chr3	128644534	128644650	ENSG00000163902.11|RPN1|pc|chr3:128644534:128644650:-	0	-
#Deleted in new
chr3	128651372	128651529	ENSG00000163902.11|RPN1|pc|chr3:128651372:128651529:-	0	-
#Deleted in new
chr3	128680753	128681075	ENSG00000163902.11|RPN1|pc|chr3:128680753:128681075:-	0	-
#Deleted in new
chr3	12871735	12871916	ENSG00000144712.11|CAND2|pc|chr3:12871735:12871916:+	0	+
#Deleted in new
chr3	12877521	12877714	ENSG00000232746.1|LINC02022|lncRNA|chr3:12877521:12877714:-	0	-
#Deleted in new
chr3	12878904	12878993	ENSG00000232746.1|LINC02022|lncRNA|chr3:12878904:12878993:-	0	-
#Deleted in new
chr3	128859715	128860526	ENSG00000261159.1|AC112484.4|lncRNA|chr3:128859715:128860526:-	0	-
#Deleted in new
chr3	128867813	128867926	ENSG00000231305.3|AC112484.2|lncRNA|chr3:128867813:128867926:-	0	-
#Partially deleted in new
chr3	128871320	128871540	ENSG00000231305.3|AC112484.2|lncRNA|chr3:128871320:128871540:-	0	-
#Deleted in new
chr3	128898430	128898506	ENSG00000177646.18|ACAD9|pc|chr3:128898430:128898506:+	0	+
#Partially deleted in new
chr3	128966588	128971433	ENSG00000114656.10|KIAA1257|pc|chr3:128966588:128971433:-	0	-
#Deleted in new
chr3	128969310	128969404	ENSG00000187695.8|AC112484.1|pc|chr3:128969310:128969404:-	0	-
#Deleted in new
chr3	128991478	128991897	ENSG00000114656.10|KIAA1257|pc|chr3:128991478:128991897:-	0	-
#Deleted in new
chr3	129092499	129092593	ENSG00000172780.16|RAB43|pc|chr3:129092499:129092593:-	0	-
#Deleted in new
chr3	129092513	129092593	ENSG00000172780.16|RAB43|pc|chr3:129092513:129092593:-	0	-
#Deleted in new
chr3	129137130	129137196	ENSG00000240682.9|ISY1|pc|chr3:129137130:129137196:-	0	-
#Deleted in new
chr3	129144067	129144189	ENSG00000240682.9|ISY1|pc|chr3:129144067:129144189:-	0	-
#Partially deleted in new
chr3	129160972	129161293	ENSG00000240682.9|ISY1|pc|chr3:129160972:129161293:-	0	-
#Deleted in new
chr3	129163605	129163940	ENSG00000273437.1|AC108673.3|lncRNA|chr3:129163605:129163940:-	0	-
#Deleted in new
chr3	129278827	129278905	ENSG00000183624.13|HMCES|pc|chr3:129278827:129278905:+	0	+
#Deleted in new
chr3	129278839	129278905	ENSG00000183624.13|HMCES|pc|chr3:129278839:129278905:+	0	+
#Deleted in new
chr3	129278845	129278905	ENSG00000183624.13|HMCES|pc|chr3:129278845:129278905:+	0	+
#Deleted in new
chr3	129278879	129278905	ENSG00000183624.13|HMCES|pc|chr3:129278879:129278905:+	0	+
#Deleted in new
chr3	129278955	129279203	ENSG00000183624.13|HMCES|pc|chr3:129278955:129279203:+	0	+
#Deleted in new
chr3	129278973	129279211	ENSG00000183624.13|HMCES|pc|chr3:129278973:129279211:+	0	+
#Deleted in new
chr3	129278992	129279043	ENSG00000183624.13|HMCES|pc|chr3:129278992:129279043:+	0	+
#Deleted in new
chr3	129279004	129279203	ENSG00000183624.13|HMCES|pc|chr3:129279004:129279203:+	0	+
#Deleted in new
chr3	129317153	129317345	ENSG00000206417.8|H1FX-AS1|lncRNA|chr3:129317153:129317345:+	0	+
#Deleted in new
chr3	129317931	129318311	ENSG00000206417.8|H1FX-AS1|lncRNA|chr3:129317931:129318311:+	0	+
#Deleted in new
chr3	129318105	129318310	ENSG00000206417.8|H1FX-AS1|lncRNA|chr3:129318105:129318310:+	0	+
#Deleted in new
chr3	129318235	129318310	ENSG00000206417.8|H1FX-AS1|lncRNA|chr3:129318235:129318310:+	0	+
#Deleted in new
chr3	129318542	129318637	ENSG00000206417.8|H1FX-AS1|lncRNA|chr3:129318542:129318637:+	0	+
#Deleted in new
chr3	129456113	129456264	ENSG00000163913.11|IFT122|pc|chr3:129456113:129456264:+	0	+
#Deleted in new
chr3	129457921	129458015	ENSG00000163913.11|IFT122|pc|chr3:129457921:129458015:+	0	+
#Deleted in new
chr3	129459314	129459451	ENSG00000163913.11|IFT122|pc|chr3:129459314:129459451:+	0	+
#Partially deleted in new
chr3	129461308	129461501	ENSG00000163913.11|IFT122|pc|chr3:129461308:129461501:+	0	+
#Deleted in new
chr3	129548385	129548476	ENSG00000178804.7|H1FOO|pc|chr3:129548385:129548476:+	0	+
#Duplicated in new
chr3	129560688	129560942	ENSG00000004399.12|PLXND1|pc|chr3:129560688:129560942:-	0	-
#Deleted in new
chr3	129561033	129561056	ENSG00000004399.12|PLXND1|pc|chr3:129561033:129561056:-	0	-
#Deleted in new
chr3	129847047	129847957	ENSG00000203644.3|AC083799.1|lncRNA|chr3:129847047:129847957:-	0	-
#Deleted in new
chr3	129848342	129848412	ENSG00000172765.16|TMCC1|pc|chr3:129848342:129848412:-	0	-
#Deleted in new
chr3	129848345	129848412	ENSG00000172765.16|TMCC1|pc|chr3:129848345:129848412:-	0	-
#Deleted in new
chr3	129857247	129857405	ENSG00000172765.16|TMCC1|pc|chr3:129857247:129857405:-	0	-
#Deleted in new
chr3	129857249	129857405	ENSG00000172765.16|TMCC1|pc|chr3:129857249:129857405:-	0	-
#Deleted in new
chr3	129857359	129857405	ENSG00000172765.16|TMCC1|pc|chr3:129857359:129857405:-	0	-
#Deleted in new
chr3	129880308	129880466	ENSG00000172765.16|TMCC1|pc|chr3:129880308:129880466:-	0	-
#Deleted in new
chr3	129880308	129880559	ENSG00000172765.16|TMCC1|pc|chr3:129880308:129880559:-	0	-
#Deleted in new
chr3	129901706	129901860	ENSG00000271270.5|TMCC1-AS1|lncRNA|chr3:129901706:129901860:+	0	+
#Deleted in new
chr3	129901706	129902205	ENSG00000271270.5|TMCC1-AS1|lncRNA|chr3:129901706:129902205:+	0	+
#Deleted in new
chr3	129901850	129901860	ENSG00000271270.5|TMCC1-AS1|lncRNA|chr3:129901850:129901860:+	0	+
#Deleted in new
chr3	129905020	129905861	ENSG00000271270.5|TMCC1-AS1|lncRNA|chr3:129905020:129905861:+	0	+
#Deleted in new
chr3	129905626	129905853	ENSG00000271270.5|TMCC1-AS1|lncRNA|chr3:129905626:129905853:+	0	+
#Deleted in new
chr3	129905626	129908911	ENSG00000271270.5|TMCC1-AS1|lncRNA|chr3:129905626:129908911:+	0	+
#Deleted in new
chr3	129918399	129918575	ENSG00000271270.5|TMCC1-AS1|lncRNA|chr3:129918399:129918575:+	0	+
#Deleted in new
chr3	129965700	129965803	ENSG00000250643.1|AC083906.3|lncRNA|chr3:129965700:129965803:-	0	-
#Deleted in new
chr3	130081830	130082036	ENSG00000251287.8|ALG1L2|pc|chr3:130081830:130082036:+	0	+
#Deleted in new
chr3	130081960	130082036	ENSG00000251287.8|ALG1L2|pc|chr3:130081960:130082036:+	0	+
#Deleted in new
chr3	130089432	130089478	ENSG00000248243.1|LINC02014|lncRNA|chr3:130089432:130089478:-	0	-
#Deleted in new
chr3	130093905	130093964	ENSG00000251287.8|ALG1L2|pc|chr3:130093905:130093964:+	0	+
#Partially deleted in new
chr3	130094147	130094304	ENSG00000248243.1|LINC02014|lncRNA|chr3:130094147:130094304:-	0	-
#Deleted in new
chr3	130112549	130112744	ENSG00000249846.6|LINC02021|lncRNA|chr3:130112549:130112744:+	0	+
#Deleted in new
chr3	130112651	130112744	ENSG00000249846.6|LINC02021|lncRNA|chr3:130112651:130112744:+	0	+
#Deleted in new
chr3	130116836	130117092	ENSG00000249846.6|LINC02021|lncRNA|chr3:130116836:130117092:+	0	+
#Deleted in new
chr3	130119056	130119174	ENSG00000249846.6|LINC02021|lncRNA|chr3:130119056:130119174:+	0	+
#Deleted in new
chr3	130119056	130119430	ENSG00000249846.6|LINC02021|lncRNA|chr3:130119056:130119430:+	0	+
#Deleted in new
chr3	130119320	130120579	ENSG00000249846.6|LINC02021|lncRNA|chr3:130119320:130120579:+	0	+
#Deleted in new
chr3	130476882	130477338	ENSG00000172752.14|COL6A5|pc|chr3:130476882:130477338:+	0	+
#Deleted in new
chr3	130477036	130477139	ENSG00000172752.14|COL6A5|pc|chr3:130477036:130477139:+	0	+
#Partially deleted in new
chr3	130723810	130723893	ENSG00000196455.7|PIK3R4|pc|chr3:130723810:130723893:-	0	-
#Deleted in new
chr3	130868003	130869357	ENSG00000284095.1|AC055733.4|lncRNA|chr3:130868003:130869357:-	0	-
#Deleted in new
chr3	130868871	130869246	ENSG00000284095.1|AC055733.4|lncRNA|chr3:130868871:130869246:-	0	-
#Deleted in new
chr3	130899413	130899634	ENSG00000250592.1|AC055733.2|lncRNA|chr3:130899413:130899634:-	0	-
#Partially deleted in new
chr3	130962901	130964095	ENSG00000017260.19|ATP2C1|pc|chr3:130962901:130964095:+	0	+
#Deleted in new
chr3	131025473	131025539	ENSG00000034533.11|ASTE1|pc|chr3:131025473:131025539:-	0	-
#Deleted in new
chr3	131025473	131025594	ENSG00000034533.11|ASTE1|pc|chr3:131025473:131025594:-	0	-
#Deleted in new
chr3	131054467	131054581	ENSG00000250129.5|AC116424.1|lncRNA|chr3:131054467:131054581:-	0	-
#Deleted in new
chr3	131054467	131054585	ENSG00000250129.5|AC116424.1|lncRNA|chr3:131054467:131054585:-	0	-
#Deleted in new
chr3	131072229	131072335	ENSG00000250129.5|AC116424.1|lncRNA|chr3:131072229:131072335:-	0	-
#Deleted in new
chr3	131072229	131072339	ENSG00000250129.5|AC116424.1|lncRNA|chr3:131072229:131072339:-	0	-
#Deleted in new
chr3	131109399	131109503	ENSG00000114670.13|NEK11|pc|chr3:131109399:131109503:+	0	+
#Partially deleted in new
chr3	131174766	131175130	ENSG00000114670.13|NEK11|pc|chr3:131174766:131175130:+	0	+
#Deleted in new
chr3	131327176	131327730	ENSG00000250608.1|AC010210.1|lncRNA|chr3:131327176:131327730:-	0	-
#Deleted in new
chr3	131327562	131327730	ENSG00000250608.1|AC010210.1|lncRNA|chr3:131327562:131327730:-	0	-
#Deleted in new
chr3	131328372	131328527	ENSG00000250608.1|AC010210.1|lncRNA|chr3:131328372:131328527:-	0	-
#Deleted in new
chr3	131328847	131330868	ENSG00000250608.1|AC010210.1|lncRNA|chr3:131328847:131330868:-	0	-
#Deleted in new
chr3	131330087	131330867	ENSG00000250608.1|AC010210.1|lncRNA|chr3:131330087:131330867:-	0	-
#Deleted in new
chr3	131330808	131330867	ENSG00000250608.1|AC010210.1|lncRNA|chr3:131330808:131330867:-	0	-
#Deleted in new
chr3	131376611	131376707	ENSG00000250608.1|AC010210.1|lncRNA|chr3:131376611:131376707:-	0	-
#Deleted in new
chr3	131381332	131381475	ENSG00000250608.1|AC010210.1|lncRNA|chr3:131381332:131381475:-	0	-
#Split in new
chr3	131383161	131388830	ENSG00000198585.11|NUDT16|pc|chr3:131383161:131388830:+	0	+
#Split in new
chr3	131383343	131388830	ENSG00000198585.11|NUDT16|pc|chr3:131383343:131388830:+	0	+
#Partially deleted in new
chr3	131487149	131487740	ENSG00000114686.8|MRPL3|pc|chr3:131487149:131487740:-	0	-
#Deleted in new
chr3	131517830	131517909	ENSG00000248468.1|AC107027.1|lncRNA|chr3:131517830:131517909:+	0	+
#Deleted in new
chr3	131520384	131520880	ENSG00000248468.1|AC107027.1|lncRNA|chr3:131520384:131520880:+	0	+
#Deleted in new
chr3	131538827	131538940	ENSG00000196353.11|CPNE4|pc|chr3:131538827:131538940:-	0	-
#Deleted in new
chr3	131925528	131925581	ENSG00000196353.11|CPNE4|pc|chr3:131925528:131925581:-	0	-
#Deleted in new
chr3	132284042	132284170	ENSG00000196353.11|CPNE4|pc|chr3:132284042:132284170:-	0	-
#Deleted in new
chr3	132285239	132285410	ENSG00000196353.11|CPNE4|pc|chr3:132285239:132285410:-	0	-
#Deleted in new
chr3	132474255	132474383	ENSG00000138246.15|DNAJC13|pc|chr3:132474255:132474383:+	0	+
#Deleted in new
chr3	132621131	132621292	ENSG00000274810.4|NPHP3-ACAD11|pc|chr3:132621131:132621292:-	0	-
#Deleted in new
chr3	132654445	132654670	ENSG00000081307.12|UBA5|pc|chr3:132654445:132654670:+	0	+
#Partially deleted in new
chr3	132692653	132693865	ENSG00000113971.19|NPHP3|pc|chr3:132692653:132693865:-	0	-
#Partially deleted in new
chr3	132717954	132718117	ENSG00000113971.19|NPHP3|pc|chr3:132717954:132718117:-	0	-
#Partially deleted in new
chr3	132721674	132721707	ENSG00000113971.19|NPHP3|pc|chr3:132721674:132721707:-	0	-
#Deleted in new
chr3	132733323	132733444	ENSG00000248724.6|NPHP3-AS1|lncRNA|chr3:132733323:132733444:+	0	+
#Deleted in new
chr3	132793533	132793614	ENSG00000248724.6|NPHP3-AS1|lncRNA|chr3:132793533:132793614:+	0	+
#Deleted in new
chr3	132800219	132800367	ENSG00000248724.6|NPHP3-AS1|lncRNA|chr3:132800219:132800367:+	0	+
#Deleted in new
chr3	132812708	132812875	ENSG00000248724.6|NPHP3-AS1|lncRNA|chr3:132812708:132812875:+	0	+
#Deleted in new
chr3	132827945	132828006	ENSG00000248724.6|NPHP3-AS1|lncRNA|chr3:132827945:132828006:+	0	+
#Deleted in new
chr3	132860547	132860620	ENSG00000248724.6|NPHP3-AS1|lncRNA|chr3:132860547:132860620:+	0	+
#Deleted in new
chr3	133015003	133015168	ENSG00000249725.1|AC079942.1|lncRNA|chr3:133015003:133015168:-	0	-
#Deleted in new
chr3	133074314	133074358	ENSG00000144868.13|TMEM108|pc|chr3:133074314:133074358:+	0	+
#Deleted in new
chr3	133120879	133120955	ENSG00000144868.13|TMEM108|pc|chr3:133120879:133120955:+	0	+
#Deleted in new
chr3	133192774	133192827	ENSG00000144868.13|TMEM108|pc|chr3:133192774:133192827:+	0	+
#Deleted in new
chr3	133404852	133404874	ENSG00000170819.4|BFSP2|pc|chr3:133404852:133404874:+	0	+
#Deleted in new
chr3	133412287	133412550	ENSG00000170819.4|BFSP2|pc|chr3:133412287:133412550:+	0	+
#Deleted in new
chr3	133429268	133429709	ENSG00000249993.1|BFSP2-AS1|lncRNA|chr3:133429268:133429709:-	0	-
#Deleted in new
chr3	133445404	133445575	ENSG00000249993.1|BFSP2-AS1|lncRNA|chr3:133445404:133445575:-	0	-
#Deleted in new
chr3	133455328	133455463	ENSG00000249993.1|BFSP2-AS1|lncRNA|chr3:133455328:133455463:-	0	-
#Partially deleted in new
chr3	133574497	133574742	ENSG00000091527.15|CDV3|pc|chr3:133574497:133574742:+	0	+
#Deleted in new
chr3	133574637	133574742	ENSG00000091527.15|CDV3|pc|chr3:133574637:133574742:+	0	+
#Deleted in new
chr3	133574637	133574756	ENSG00000091527.15|CDV3|pc|chr3:133574637:133574756:+	0	+
#Deleted in new
chr3	133574647	133574756	ENSG00000091527.15|CDV3|pc|chr3:133574647:133574756:+	0	+
#Deleted in new
chr3	133598174	133598462	ENSG00000163781.12|TOPBP1|pc|chr3:133598174:133598462:-	0	-
#Deleted in new
chr3	133598174	133598630	ENSG00000163781.12|TOPBP1|pc|chr3:133598174:133598630:-	0	-
#Deleted in new
chr3	133598555	133598630	ENSG00000163781.12|TOPBP1|pc|chr3:133598555:133598630:-	0	-
#Split in new
chr3	133784777	133796640	ENSG00000284714.1|AC080128.2|lncRNA|chr3:133784777:133796640:+	0	+
#Partially deleted in new
chr3	133810261	133811199	ENSG00000144867.11|SRPRB|pc|chr3:133810261:133811199:+	0	+
#Deleted in new
chr3	133998647	133998786	ENSG00000174640.12|SLCO2A1|pc|chr3:133998647:133998786:-	0	-
#Deleted in new
chr3	134065302	134065790	ENSG00000163785.12|RYK|pc|chr3:134065302:134065790:-	0	-
#Deleted in new
chr3	134065955	134066111	ENSG00000163785.12|RYK|pc|chr3:134065955:134066111:-	0	-
#Deleted in new
chr3	134075034	134075213	ENSG00000163785.12|RYK|pc|chr3:134075034:134075213:-	0	-
#Deleted in new
chr3	134488018	134488090	ENSG00000182923.16|CEP63|pc|chr3:134488018:134488090:+	0	+
#Deleted in new
chr3	134574792	134574891	ENSG00000182923.16|CEP63|pc|chr3:134574792:134574891:+	0	+
#Deleted in new
chr3	134574792	134575011	ENSG00000182923.16|CEP63|pc|chr3:134574792:134575011:+	0	+
#Deleted in new
chr3	134574792	134575013	ENSG00000182923.16|CEP63|pc|chr3:134574792:134575013:+	0	+
#Deleted in new
chr3	134574792	134575017	ENSG00000182923.16|CEP63|pc|chr3:134574792:134575017:+	0	+
#Deleted in new
chr3	134597800	134597984	ENSG00000154928.16|EPHB1|pc|chr3:134597800:134597984:+	0	+
#Deleted in new
chr3	134597823	134597984	ENSG00000154928.16|EPHB1|pc|chr3:134597823:134597984:+	0	+
#Deleted in new
chr3	134597878	134597984	ENSG00000154928.16|EPHB1|pc|chr3:134597878:134597984:+	0	+
#Partially deleted in new
chr3	134615364	134615438	ENSG00000154928.16|EPHB1|pc|chr3:134615364:134615438:+	0	+
#Deleted in new
chr3	134639824	134639942	ENSG00000174611.11|KY|pc|chr3:134639824:134639942:-	0	-
#Deleted in new
chr3	13476981	13477085	ENSG00000244502.2|HDAC11-AS1|lncRNA|chr3:13476981:13477085:-	0	-
#Partially deleted in new
chr3	13501870	13502588	ENSG00000163517.14|HDAC11|pc|chr3:13501870:13502588:+	0	+
#Deleted in new
chr3	135067531	135067917	ENSG00000154928.16|EPHB1|pc|chr3:135067531:135067917:+	0	+
#Deleted in new
chr3	135379780	135379847	ENSG00000240086.5|AC128689.1|lncRNA|chr3:135379780:135379847:-	0	-
#Deleted in new
chr3	135439755	135439822	ENSG00000240086.5|AC128689.1|lncRNA|chr3:135439755:135439822:-	0	-
#Deleted in new
chr3	135439755	135439829	ENSG00000240086.5|AC128689.1|lncRNA|chr3:135439755:135439829:-	0	-
#Deleted in new
chr3	135439755	135439888	ENSG00000240086.5|AC128689.1|lncRNA|chr3:135439755:135439888:-	0	-
#Deleted in new
chr3	13566475	13566542	ENSG00000163520.13|FBLN2|pc|chr3:13566475:13566542:+	0	+
#Partially deleted in new
chr3	13568739	13569080	ENSG00000163520.13|FBLN2|pc|chr3:13568739:13569080:+	0	+
#Partially deleted in new
chr3	136106479	136106920	ENSG00000073711.10|PPP2R3A|pc|chr3:136106479:136106920:+	0	+
#Deleted in new
chr3	136197208	136197241	ENSG00000174579.3|MSL2|pc|chr3:136197208:136197241:-	0	-
#Deleted in new
chr3	136252302	136252389	ENSG00000114054.13|PCCB|pc|chr3:136252302:136252389:+	0	+
#Deleted in new
chr3	136256124	136256270	ENSG00000114054.13|PCCB|pc|chr3:136256124:136256270:+	0	+
#Deleted in new
chr3	136259175	136259235	ENSG00000114054.13|PCCB|pc|chr3:136259175:136259235:+	0	+
#Deleted in new
chr3	136260262	136260355	ENSG00000114054.13|PCCB|pc|chr3:136260262:136260355:+	0	+
#Deleted in new
chr3	136326325	136326385	ENSG00000114054.13|PCCB|pc|chr3:136326325:136326385:+	0	+
#Deleted in new
chr3	13650695	13650833	ENSG00000224514.2|LINC00620|lncRNA|chr3:13650695:13650833:+	0	+
#Deleted in new
chr3	13650720	13650833	ENSG00000224514.2|LINC00620|lncRNA|chr3:13650720:13650833:+	0	+
#Deleted in new
chr3	136586801	136586926	ENSG00000118007.12|STAG1|pc|chr3:136586801:136586926:-	0	-
#Deleted in new
chr3	136591444	136591549	ENSG00000118007.12|STAG1|pc|chr3:136591444:136591549:-	0	-
#Deleted in new
chr3	136841725	136842569	ENSG00000239213.5|NCK1-AS1|lncRNA|chr3:136841725:136842569:-	0	-
#Deleted in new
chr3	136842190	136842569	ENSG00000239213.5|NCK1-AS1|lncRNA|chr3:136842190:136842569:-	0	-
#Deleted in new
chr3	136842351	136843322	ENSG00000168917.8|SLC35G2|pc|chr3:136842351:136843322:+	0	+
#Deleted in new
chr3	136842456	136842569	ENSG00000239213.5|NCK1-AS1|lncRNA|chr3:136842456:136842569:-	0	-
#Deleted in new
chr3	136846527	136846586	ENSG00000239213.5|NCK1-AS1|lncRNA|chr3:136846527:136846586:-	0	-
#Deleted in new
chr3	136858517	136858603	ENSG00000239213.5|NCK1-AS1|lncRNA|chr3:136858517:136858603:-	0	-
#Deleted in new
chr3	136867430	136867525	ENSG00000158092.6|NCK1|pc|chr3:136867430:136867525:+	0	+
#Deleted in new
chr3	136889078	136889301	ENSG00000158092.6|NCK1|pc|chr3:136889078:136889301:+	0	+
#Deleted in new
chr3	136969244	136969378	ENSG00000174564.12|IL20RB|pc|chr3:136969244:136969378:+	0	+
#Partially deleted in new
chr3	136986693	136986784	ENSG00000174564.12|IL20RB|pc|chr3:136986693:136986784:+	0	+
#Deleted in new
chr3	13717687	13717760	ENSG00000224514.2|LINC00620|lncRNA|chr3:13717687:13717760:+	0	+
#Deleted in new
chr3	13718235	13718354	ENSG00000224514.2|LINC00620|lncRNA|chr3:13718235:13718354:+	0	+
#Deleted in new
chr3	13735635	13735828	ENSG00000224514.2|LINC00620|lncRNA|chr3:13735635:13735828:+	0	+
#Deleted in new
chr3	138004648	138005122	ENSG00000272609.1|AC016252.1|lncRNA|chr3:138004648:138005122:-	0	-
#Partially deleted in new
chr3	138171319	138171468	ENSG00000138231.12|DBR1|pc|chr3:138171319:138171468:-	0	-
#Deleted in new
chr3	138327030	138327128	ENSG00000181322.13|NME9|pc|chr3:138327030:138327128:-	0	-
#Deleted in new
chr3	138482064	138485755	ENSG00000280399.1|AC022497.1|lncRNA|chr3:138482064:138485755:+	0	+
#Deleted in new
chr3	138496909	138497327	ENSG00000114107.8|CEP70|pc|chr3:138496909:138497327:-	0	-
#Deleted in new
chr3	138531506	138531623	ENSG00000114107.8|CEP70|pc|chr3:138531506:138531623:-	0	-
#Deleted in new
chr3	138592980	138593080	ENSG00000114107.8|CEP70|pc|chr3:138592980:138593080:-	0	-
#Partially deleted in new
chr3	138608939	138609146	ENSG00000158234.12|FAIM|pc|chr3:138608939:138609146:+	0	+
#Deleted in new
chr3	138609071	138609146	ENSG00000158234.12|FAIM|pc|chr3:138609071:138609146:+	0	+
#Deleted in new
chr3	138610603	138611037	ENSG00000158234.12|FAIM|pc|chr3:138610603:138611037:+	0	+
#Partially deleted in new
chr3	138629106	138631139	ENSG00000158234.12|FAIM|pc|chr3:138629106:138631139:+	0	+
#Deleted in new
chr3	13875903	13875955	ENSG00000154764.5|WNT7A|pc|chr3:13875903:13875955:-	0	-
#Deleted in new
chr3	13876969	13877220	ENSG00000154764.5|WNT7A|pc|chr3:13876969:13877220:-	0	-
#Deleted in new
chr3	138770050	138770117	ENSG00000051382.8|PIK3CB|pc|chr3:138770050:138770117:-	0	-
#Deleted in new
chr3	138770050	138770555	ENSG00000051382.8|PIK3CB|pc|chr3:138770050:138770555:-	0	-
#Partially deleted in new
chr3	138950264	138953451	ENSG00000206262.8|FOXL2NB|pc|chr3:138950264:138953451:+	0	+
#Deleted in new
chr3	139162320	139162426	ENSG00000175110.11|MRPS22|pc|chr3:139162320:139162426:+	0	+
#Deleted in new
chr3	139163029	139163210	ENSG00000175110.11|MRPS22|pc|chr3:139163029:139163210:+	0	+
#Deleted in new
chr3	139180289	139180360	ENSG00000175110.11|MRPS22|pc|chr3:139180289:139180360:+	0	+
#Deleted in new
chr3	139349023	139349371	ENSG00000272656.1|AC024933.1|lncRNA|chr3:139349023:139349371:-	0	-
#Deleted in new
chr3	139349327	139349434	ENSG00000175110.11|MRPS22|pc|chr3:139349327:139349434:+	0	+
#Deleted in new
chr3	139385003	139385200	ENSG00000184432.9|COPB2|pc|chr3:139385003:139385200:-	0	-
#Partially deleted in new
chr3	139385003	139385429	ENSG00000184432.9|COPB2|pc|chr3:139385003:139385429:-	0	-
#Deleted in new
chr3	139419556	139419680	ENSG00000248932.5|AC097103.2|lncRNA|chr3:139419556:139419680:+	0	+
#Deleted in new
chr3	139466429	139466479	ENSG00000248790.1|AC097103.1|lncRNA|chr3:139466429:139466479:+	0	+
#Deleted in new
chr3	139466572	139466795	ENSG00000248790.1|AC097103.1|lncRNA|chr3:139466572:139466795:+	0	+
#Deleted in new
chr3	139480691	139480723	ENSG00000114113.6|RBP2|pc|chr3:139480691:139480723:-	0	-
#Deleted in new
chr3	139480691	139480747	ENSG00000114113.6|RBP2|pc|chr3:139480691:139480747:-	0	-
#Deleted in new
chr3	139572106	139572233	ENSG00000163864.15|NMNAT3|pc|chr3:139572106:139572233:-	0	-
#Deleted in new
chr3	139575582	139575648	ENSG00000163864.15|NMNAT3|pc|chr3:139575582:139575648:-	0	-
#Partially deleted in new
chr3	139689131	139689342	ENSG00000250543.1|AC110716.1|lncRNA|chr3:139689131:139689342:-	0	-
#Deleted in new
chr3	139859622	139859894	ENSG00000251471.1|AC016933.1|lncRNA|chr3:139859622:139859894:+	0	+
#Deleted in new
chr3	140449434	140449776	ENSG00000249290.5|AC010181.1|lncRNA|chr3:140449434:140449776:-	0	-
#Deleted in new
chr3	140449509	140449776	ENSG00000249290.5|AC010181.1|lncRNA|chr3:140449509:140449776:-	0	-
#Partially deleted in new
chr3	140506651	140508789	ENSG00000250433.1|CLSTN2-AS1|lncRNA|chr3:140506651:140508789:-	0	-
#Deleted in new
chr3	140865074	140867783	ENSG00000261826.1|AC121333.1|lncRNA|chr3:140865074:140867783:-	0	-
#Deleted in new
chr3	140972743	140972914	ENSG00000248773.1|AC108727.1|lncRNA|chr3:140972743:140972914:+	0	+
#Deleted in new
chr3	140973033	140973255	ENSG00000248773.1|AC108727.1|lncRNA|chr3:140973033:140973255:+	0	+
#Deleted in new
chr3	141115123	141115336	ENSG00000251270.1|AC108727.2|lncRNA|chr3:141115123:141115336:-	0	-
#Deleted in new
chr3	141132188	141132310	ENSG00000175093.4|SPSB4|pc|chr3:141132188:141132310:+	0	+
#Partially deleted in new
chr3	14119144	14119313	ENSG00000163528.12|CHCHD4|pc|chr3:14119144:14119313:-	0	-
#Deleted in new
chr3	14121916	14122086	ENSG00000163528.12|CHCHD4|pc|chr3:14121916:14122086:-	0	-
#Partially deleted in new
chr3	141235397	141235554	ENSG00000155893.12|PXYLP1|pc|chr3:141235397:141235554:+	0	+
#Deleted in new
chr3	141267352	141267608	ENSG00000249417.1|AC117383.1|lncRNA|chr3:141267352:141267608:-	0	-
#Deleted in new
chr3	14128854	14129085	ENSG00000170876.7|TMEM43|pc|chr3:14128854:14129085:+	0	+
#Partially deleted in new
chr3	141305755	141307776	ENSG00000155893.12|PXYLP1|pc|chr3:141305755:141307776:+	0	+
#Deleted in new
chr3	141308203	141308407	ENSG00000155893.12|PXYLP1|pc|chr3:141308203:141308407:+	0	+
#Deleted in new
chr3	141316254	141317922	ENSG00000155893.12|PXYLP1|pc|chr3:141316254:141317922:+	0	+
#Deleted in new
chr3	141321011	141321722	ENSG00000155893.12|PXYLP1|pc|chr3:141321011:141321722:+	0	+
#Deleted in new
chr3	141396258	141396503	ENSG00000177311.11|ZBTB38|pc|chr3:141396258:141396503:+	0	+
#Deleted in new
chr3	141438242	141438365	ENSG00000177311.11|ZBTB38|pc|chr3:141438242:141438365:+	0	+
#Deleted in new
chr3	141438267	141438365	ENSG00000177311.11|ZBTB38|pc|chr3:141438267:141438365:+	0	+
#Partially deleted in new
chr3	14147466	14148001	ENSG00000154767.14|XPC|pc|chr3:14147466:14148001:-	0	-
#Deleted in new
chr3	14149506	14149602	ENSG00000228242.6|AC093495.1|lncRNA|chr3:14149506:14149602:+	0	+
#Deleted in new
chr3	141525132	141525356	ENSG00000250170.1|RASA2-IT1|lncRNA|chr3:141525132:141525356:+	0	+
#Deleted in new
chr3	141525733	141526121	ENSG00000250170.1|RASA2-IT1|lncRNA|chr3:141525733:141526121:+	0	+
#Deleted in new
chr3	14152678	14152800	ENSG00000228242.6|AC093495.1|lncRNA|chr3:14152678:14152800:+	0	+
#Deleted in new
chr3	14152678	14152817	ENSG00000228242.6|AC093495.1|lncRNA|chr3:14152678:14152817:+	0	+
#Deleted in new
chr3	14152678	14152878	ENSG00000228242.6|AC093495.1|lncRNA|chr3:14152678:14152878:+	0	+
#Deleted in new
chr3	14152678	14152971	ENSG00000228242.6|AC093495.1|lncRNA|chr3:14152678:14152971:+	0	+
#Deleted in new
chr3	14152678	14153449	ENSG00000228242.6|AC093495.1|lncRNA|chr3:14152678:14153449:+	0	+
#Partially deleted in new
chr3	14164365	14164933	ENSG00000154767.14|XPC|pc|chr3:14164365:14164933:-	0	-
#Deleted in new
chr3	141742643	141742907	ENSG00000114125.13|RNF7|pc|chr3:141742643:141742907:+	0	+
#Deleted in new
chr3	141742643	141743027	ENSG00000114125.13|RNF7|pc|chr3:141742643:141743027:+	0	+
#Duplicated in new
chr3	141780373	141780811	ENSG00000114124.2|GRK7|pc|chr3:141780373:141780811:+	0	+
#Deleted in new
chr3	141807644	141807919	ENSG00000114124.2|GRK7|pc|chr3:141807644:141807919:+	0	+
#Deleted in new
chr3	141918251	141918341	ENSG00000244124.1|ATP1B3-AS1|lncRNA|chr3:141918251:141918341:-	0	-
#Deleted in new
chr3	141918735	141919021	ENSG00000244124.1|ATP1B3-AS1|lncRNA|chr3:141918735:141919021:-	0	-
#Deleted in new
chr3	141989066	141989514	ENSG00000114126.17|TFDP2|pc|chr3:141989066:141989514:-	0	-
#Deleted in new
chr3	142000251	142000353	ENSG00000114126.17|TFDP2|pc|chr3:142000251:142000353:-	0	-
#Deleted in new
chr3	142000251	142000354	ENSG00000114126.17|TFDP2|pc|chr3:142000251:142000354:-	0	-
#Deleted in new
chr3	142000324	142000354	ENSG00000114126.17|TFDP2|pc|chr3:142000324:142000354:-	0	-
#Deleted in new
chr3	142054114	142054149	ENSG00000114126.17|TFDP2|pc|chr3:142054114:142054149:-	0	-
#Deleted in new
chr3	142090791	142090838	ENSG00000114126.17|TFDP2|pc|chr3:142090791:142090838:-	0	-
#Deleted in new
chr3	142126148	142126370	ENSG00000114126.17|TFDP2|pc|chr3:142126148:142126370:-	0	-
#Deleted in new
chr3	142163571	142163822	ENSG00000175066.15|GK5|pc|chr3:142163571:142163822:-	0	-
#Deleted in new
chr3	142173075	142173197	ENSG00000175066.15|GK5|pc|chr3:142173075:142173197:-	0	-
#Partially deleted in new
chr3	142184710	142185793	ENSG00000175066.15|GK5|pc|chr3:142184710:142185793:-	0	-
#Deleted in new
chr3	142204296	142204311	ENSG00000175066.15|GK5|pc|chr3:142204296:142204311:-	0	-
#Deleted in new
chr3	142435012	142435390	ENSG00000114127.10|XRN1|pc|chr3:142435012:142435390:-	0	-
#Deleted in new
chr3	142435950	142436056	ENSG00000114127.10|XRN1|pc|chr3:142435950:142436056:-	0	-
#Deleted in new
chr3	142472069	142472337	ENSG00000244327.1|AC109992.2|lncRNA|chr3:142472069:142472337:-	0	-
#Deleted in new
chr3	142499129	142499192	ENSG00000175054.14|ATR|pc|chr3:142499129:142499192:-	0	-
#Deleted in new
chr3	142627815	142627908	ENSG00000120756.12|PLS1|pc|chr3:142627815:142627908:+	0	+
#Deleted in new
chr3	142654783	142654941	ENSG00000239641.1|PLS1-AS1|lncRNA|chr3:142654783:142654941:-	0	-
#Deleted in new
chr3	14272372	14272843	ENSG00000255021.1|AC093496.1|lncRNA|chr3:14272372:14272843:-	0	-
#Deleted in new
chr3	142815921	142816001	ENSG00000163710.7|PCOLCE2|pc|chr3:142815921:142816001:-	0	-
#Deleted in new
chr3	142843244	142843309	ENSG00000163710.7|PCOLCE2|pc|chr3:142843244:142843309:-	0	-
#Deleted in new
chr3	142933204	142933268	ENSG00000243818.4|AC021074.3|lncRNA|chr3:142933204:142933268:+	0	+
#Partially deleted in new
chr3	142938239	142938653	ENSG00000243818.4|AC021074.3|lncRNA|chr3:142938239:142938653:+	0	+
#Deleted in new
chr3	142938474	142938653	ENSG00000243818.4|AC021074.3|lncRNA|chr3:142938474:142938653:+	0	+
#Partially deleted in new
chr3	142964745	142965124	ENSG00000241570.8|PAQR9-AS1|lncRNA|chr3:142964745:142965124:+	0	+
#Partially deleted in new
chr3	142966907	142967466	ENSG00000241570.8|PAQR9-AS1|lncRNA|chr3:142966907:142967466:+	0	+
#Deleted in new
chr3	142990014	142990137	ENSG00000241570.8|PAQR9-AS1|lncRNA|chr3:142990014:142990137:+	0	+
#Deleted in new
chr3	142990014	142990587	ENSG00000241570.8|PAQR9-AS1|lncRNA|chr3:142990014:142990587:+	0	+
#Deleted in new
chr3	142993996	142994140	ENSG00000163714.17|U2SURP|pc|chr3:142993996:142994140:+	0	+
#Deleted in new
chr3	142993996	142994140	ENSG00000241570.8|PAQR9-AS1|lncRNA|chr3:142993996:142994140:+	0	+
#Deleted in new
chr3	142994600	142994817	ENSG00000241570.8|PAQR9-AS1|lncRNA|chr3:142994600:142994817:+	0	+
#Deleted in new
chr3	142998399	142998494	ENSG00000163714.17|U2SURP|pc|chr3:142998399:142998494:+	0	+
#Deleted in new
chr3	142998399	142998494	ENSG00000241570.8|PAQR9-AS1|lncRNA|chr3:142998399:142998494:+	0	+
#Deleted in new
chr3	143342245	143342284	ENSG00000240012.1|SLC9A9-AS1|lncRNA|chr3:143342245:143342284:+	0	+
#Deleted in new
chr3	143381337	143381446	ENSG00000244493.1|SLC9A9-AS2|lncRNA|chr3:143381337:143381446:+	0	+
#Deleted in new
chr3	14348450	14348773	ENSG00000251576.1|LINC01267|lncRNA|chr3:14348450:14348773:-	0	-
#Deleted in new
chr3	14349352	14349465	ENSG00000251576.1|LINC01267|lncRNA|chr3:14349352:14349465:-	0	-
#Deleted in new
chr3	14350720	14352568	ENSG00000251576.1|LINC01267|lncRNA|chr3:14350720:14352568:-	0	-
#Partially deleted in new
chr3	143973089	143973255	ENSG00000181744.8|C3orf58|pc|chr3:143973089:143973255:+	0	+
#Deleted in new
chr3	14432669	14432787	ENSG00000131389.16|SLC6A6|pc|chr3:14432669:14432787:+	0	+
#Deleted in new
chr3	145939911	145940154	ENSG00000244358.1|AC055758.2|lncRNA|chr3:145939911:145940154:+	0	+
#Deleted in new
chr3	145939967	145940154	ENSG00000244358.1|AC055758.2|lncRNA|chr3:145939967:145940154:+	0	+
#Partially deleted in new
chr3	145961754	145962220	ENSG00000240095.1|AC055758.1|lncRNA|chr3:145961754:145962220:+	0	+
#Deleted in new
chr3	146059584	146061679	ENSG00000261051.1|AC107021.2|lncRNA|chr3:146059584:146061679:-	0	-
#Deleted in new
chr3	146064041	146064250	ENSG00000243415.2|AC107021.1|lncRNA|chr3:146064041:146064250:+	0	+
#Deleted in new
chr3	146064118	146064250	ENSG00000243415.2|AC107021.1|lncRNA|chr3:146064118:146064250:+	0	+
#Partially deleted in new
chr3	146066343	146066685	ENSG00000240032.1|LNCSRLR|lncRNA|chr3:146066343:146066685:-	0	-
#Deleted in new
chr3	146068113	146068178	ENSG00000243415.2|AC107021.1|lncRNA|chr3:146068113:146068178:+	0	+
#Deleted in new
chr3	146068113	146068257	ENSG00000243415.2|AC107021.1|lncRNA|chr3:146068113:146068257:+	0	+
#Deleted in new
chr3	146163593	146163653	ENSG00000152952.11|PLOD2|pc|chr3:146163593:146163653:-	0	-
#Deleted in new
chr3	146222199	146222433	ENSG00000114698.14|PLSCR4|pc|chr3:146222199:146222433:-	0	-
#Deleted in new
chr3	146223732	146223777	ENSG00000114698.14|PLSCR4|pc|chr3:146223732:146223777:-	0	-
#Deleted in new
chr3	146250556	146250637	ENSG00000114698.14|PLSCR4|pc|chr3:146250556:146250637:-	0	-
#Deleted in new
chr3	146250556	146250867	ENSG00000114698.14|PLSCR4|pc|chr3:146250556:146250867:-	0	-
#Deleted in new
chr3	146250959	146251079	ENSG00000114698.14|PLSCR4|pc|chr3:146250959:146251079:-	0	-
#Deleted in new
chr3	146250959	146251083	ENSG00000114698.14|PLSCR4|pc|chr3:146250959:146251083:-	0	-
#Deleted in new
chr3	146250959	146251105	ENSG00000114698.14|PLSCR4|pc|chr3:146250959:146251105:-	0	-
#Deleted in new
chr3	146250959	146251125	ENSG00000114698.14|PLSCR4|pc|chr3:146250959:146251125:-	0	-
#Deleted in new
chr3	146250959	146251143	ENSG00000114698.14|PLSCR4|pc|chr3:146250959:146251143:-	0	-
#Deleted in new
chr3	146250959	146251179	ENSG00000114698.14|PLSCR4|pc|chr3:146250959:146251179:-	0	-
#Deleted in new
chr3	14635462	14635557	ENSG00000283392.1|AC090952.2|lncRNA|chr3:14635462:14635557:+	0	+
#Deleted in new
chr3	146433287	146433517	ENSG00000163746.11|PLSCR2|pc|chr3:146433287:146433517:-	0	-
#Deleted in new
chr3	146433294	146433517	ENSG00000163746.11|PLSCR2|pc|chr3:146433294:146433517:-	0	-
#Deleted in new
chr3	146433444	146433517	ENSG00000163746.11|PLSCR2|pc|chr3:146433444:146433517:-	0	-
#Deleted in new
chr3	146909684	146909711	ENSG00000243620.1|AC092957.1|lncRNA|chr3:146909684:146909711:-	0	-
#Deleted in new
chr3	146919067	146919185	ENSG00000243620.1|AC092957.1|lncRNA|chr3:146919067:146919185:-	0	-
#Deleted in new
chr3	146921922	146922174	ENSG00000242671.1|LINC02010|lncRNA|chr3:146921922:146922174:+	0	+
#Deleted in new
chr3	146921962	146922174	ENSG00000242671.1|LINC02010|lncRNA|chr3:146921962:146922174:+	0	+
#Deleted in new
chr3	146923300	146923324	ENSG00000242671.1|LINC02010|lncRNA|chr3:146923300:146923324:+	0	+
#Deleted in new
chr3	146923601	146923841	ENSG00000242671.1|LINC02010|lncRNA|chr3:146923601:146923841:+	0	+
#Deleted in new
chr3	146926454	146926650	ENSG00000243620.1|AC092957.1|lncRNA|chr3:146926454:146926650:-	0	-
#Deleted in new
chr3	147156464	147156561	ENSG00000243620.1|AC092957.1|lncRNA|chr3:147156464:147156561:-	0	-
#Deleted in new
chr3	14722073	14722239	ENSG00000131379.9|C3orf20|pc|chr3:14722073:14722239:+	0	+
#Partially deleted in new
chr3	147509594	147510293	ENSG00000152977.9|ZIC1|pc|chr3:147509594:147510293:+	0	+
#Deleted in new
chr3	14764951	14765632	ENSG00000230172.1|AC090957.1|lncRNA|chr3:14764951:14765632:-	0	-
#Deleted in new
chr3	147844122	147844522	ENSG00000239661.1|AC092925.1|lncRNA|chr3:147844122:147844522:-	0	-
#Deleted in new
chr3	147844621	147844646	ENSG00000239661.1|AC092925.1|lncRNA|chr3:147844621:147844646:-	0	-
#Deleted in new
chr3	147995754	147995852	ENSG00000239922.1|AC092958.1|lncRNA|chr3:147995754:147995852:+	0	+
#Deleted in new
chr3	14803214	14803296	ENSG00000260902.1|LINC02011|lncRNA|chr3:14803214:14803296:-	0	-
#Partially deleted in new
chr3	148087737	148088029	ENSG00000241131.1|LINC02032|lncRNA|chr3:148087737:148088029:+	0	+
#Deleted in new
chr3	148115541	148115609	ENSG00000241792.1|AC092958.2|lncRNA|chr3:148115541:148115609:+	0	+
#Deleted in new
chr3	148160910	148161076	ENSG00000244650.2|AC025566.1|lncRNA|chr3:148160910:148161076:+	0	+
#Deleted in new
chr3	148207845	148207934	ENSG00000243347.1|LINC02045|lncRNA|chr3:148207845:148207934:-	0	-
#Deleted in new
chr3	148210024	148210088	ENSG00000243347.1|LINC02045|lncRNA|chr3:148210024:148210088:-	0	-
#Deleted in new
chr3	148279781	148280098	ENSG00000243347.1|LINC02045|lncRNA|chr3:148279781:148280098:-	0	-
#Deleted in new
chr3	148280890	148281109	ENSG00000242440.1|LINC02046|lncRNA|chr3:148280890:148281109:+	0	+
#Deleted in new
chr3	148362197	148362301	ENSG00000242440.1|LINC02046|lncRNA|chr3:148362197:148362301:+	0	+
#Deleted in new
chr3	148399776	148399956	ENSG00000242440.1|LINC02046|lncRNA|chr3:148399776:148399956:+	0	+
#Duplicated in new
chr3	148730099	148730509	ENSG00000144891.17|AGTR1|pc|chr3:148730099:148730509:+	0	+
#Deleted in new
chr3	148731190	148731316	ENSG00000144891.17|AGTR1|pc|chr3:148731190:148731316:+	0	+
#Deleted in new
chr3	148731190	148731497	ENSG00000144891.17|AGTR1|pc|chr3:148731190:148731497:+	0	+
#Deleted in new
chr3	148805659	148805896	ENSG00000153002.11|CPB1|pc|chr3:148805659:148805896:+	0	+
#Deleted in new
chr3	148810675	148810791	ENSG00000153002.11|CPB1|pc|chr3:148810675:148810791:+	0	+
#Deleted in new
chr3	14882304	14882354	ENSG00000154783.11|FGD5|pc|chr3:14882304:14882354:+	0	+
#Partially deleted in new
chr3	148838174	148838412	ENSG00000153002.11|CPB1|pc|chr3:148838174:148838412:+	0	+
#Deleted in new
chr3	148856442	148856788	ENSG00000153002.11|CPB1|pc|chr3:148856442:148856788:+	0	+
#Deleted in new
chr3	148869947	148870089	ENSG00000240521.1|AC092979.1|lncRNA|chr3:148869947:148870089:-	0	-
#Deleted in new
chr3	148911256	148911352	ENSG00000240521.1|AC092979.1|lncRNA|chr3:148911256:148911352:-	0	-
#Deleted in new
chr3	148960046	148960112	ENSG00000240521.1|AC092979.1|lncRNA|chr3:148960046:148960112:-	0	-
#Deleted in new
chr3	149008251	149008276	ENSG00000163754.17|GYG1|pc|chr3:149008251:149008276:+	0	+
#Deleted in new
chr3	149052044	149052144	ENSG00000071794.15|HLTF|pc|chr3:149052044:149052144:-	0	-
#Deleted in new
chr3	149102586	149102823	ENSG00000239718.1|HLTF-AS1|lncRNA|chr3:149102586:149102823:+	0	+
#Deleted in new
chr3	14920346	14920483	ENSG00000225733.5|FGD5-AS1|lncRNA|chr3:14920346:14920483:-	0	-
#Deleted in new
chr3	14921308	14921459	ENSG00000225733.5|FGD5-AS1|lncRNA|chr3:14921308:14921459:-	0	-
#Deleted in new
chr3	149217865	149217985	ENSG00000047457.13|CP|pc|chr3:149217865:149217985:-	0	-
#Deleted in new
chr3	149284781	149285182	ENSG00000244468.1|AC093001.1|lncRNA|chr3:149284781:149285182:+	0	+
#Partially deleted in new
chr3	14930762	14932731	ENSG00000154783.11|FGD5|pc|chr3:14930762:14932731:+	0	+
#Deleted in new
chr3	149318497	149321492	ENSG00000163762.6|TM4SF18|pc|chr3:149318497:149321492:-	0	-
#Deleted in new
chr3	149321276	149321492	ENSG00000163762.6|TM4SF18|pc|chr3:149321276:149321492:-	0	-
#Deleted in new
chr3	149322255	149322436	ENSG00000163762.6|TM4SF18|pc|chr3:149322255:149322436:-	0	-
#Deleted in new
chr3	149322367	149322436	ENSG00000163762.6|TM4SF18|pc|chr3:149322367:149322436:-	0	-
#Deleted in new
chr3	149324803	149325022	ENSG00000163762.6|TM4SF18|pc|chr3:149324803:149325022:-	0	-
#Deleted in new
chr3	149324879	149325022	ENSG00000163762.6|TM4SF18|pc|chr3:149324879:149325022:-	0	-
#Deleted in new
chr3	149329927	149330419	ENSG00000163762.6|TM4SF18|pc|chr3:149329927:149330419:-	0	-
#Deleted in new
chr3	149330329	149330419	ENSG00000163762.6|TM4SF18|pc|chr3:149330329:149330419:-	0	-
#Deleted in new
chr3	149333205	149333328	ENSG00000163762.6|TM4SF18|pc|chr3:149333205:149333328:-	0	-
#Deleted in new
chr3	149333205	149333399	ENSG00000163762.6|TM4SF18|pc|chr3:149333205:149333399:-	0	-
#Deleted in new
chr3	149333205	149333482	ENSG00000163762.6|TM4SF18|pc|chr3:149333205:149333482:-	0	-
#Deleted in new
chr3	149333503	149333653	ENSG00000244468.1|AC093001.1|lncRNA|chr3:149333503:149333653:+	0	+
#Deleted in new
chr3	149333512	149333609	ENSG00000163762.6|TM4SF18|pc|chr3:149333512:149333609:-	0	-
#Deleted in new
chr3	149333512	149333635	ENSG00000163762.6|TM4SF18|pc|chr3:149333512:149333635:-	0	-
#Deleted in new
chr3	149333512	149333761	ENSG00000163762.6|TM4SF18|pc|chr3:149333512:149333761:-	0	-
#Deleted in new
chr3	149334345	149334414	ENSG00000163762.6|TM4SF18|pc|chr3:149334345:149334414:-	0	-
#Deleted in new
chr3	149385624	149385800	ENSG00000243885.1|AC108751.4|lncRNA|chr3:149385624:149385800:-	0	-
#Deleted in new
chr3	14942783	14946154	ENSG00000225733.5|FGD5-AS1|lncRNA|chr3:14942783:14946154:-	0	-
#Deleted in new
chr3	14944679	14946154	ENSG00000225733.5|FGD5-AS1|lncRNA|chr3:14944679:14946154:-	0	-
#Deleted in new
chr3	14944692	14946154	ENSG00000225733.5|FGD5-AS1|lncRNA|chr3:14944692:14946154:-	0	-
#Deleted in new
chr3	14945023	14946154	ENSG00000225733.5|FGD5-AS1|lncRNA|chr3:14945023:14946154:-	0	-
#Deleted in new
chr3	149648996	149649102	ENSG00000241985.1|WWTR1-IT1|lncRNA|chr3:149648996:149649102:-	0	-
#Deleted in new
chr3	149649839	149650184	ENSG00000241985.1|WWTR1-IT1|lncRNA|chr3:149649839:149650184:-	0	-
#Partially deleted in new
chr3	149659377	149660319	ENSG00000241313.2|WWTR1-AS1|lncRNA|chr3:149659377:149660319:+	0	+
#Deleted in new
chr3	149661105	149661364	ENSG00000241313.2|WWTR1-AS1|lncRNA|chr3:149661105:149661364:+	0	+
#Deleted in new
chr3	149669787	149669891	ENSG00000018408.14|WWTR1|pc|chr3:149669787:149669891:-	0	-
#Deleted in new
chr3	149724079	149724215	ENSG00000018408.14|WWTR1|pc|chr3:149724079:149724215:-	0	-
#Deleted in new
chr3	149724701	149724788	ENSG00000018408.14|WWTR1|pc|chr3:149724701:149724788:-	0	-
#Deleted in new
chr3	149725471	149725544	ENSG00000018408.14|WWTR1|pc|chr3:149725471:149725544:-	0	-
#Duplicated in new
chr3	149741389	149741718	ENSG00000114744.8|COMMD2|pc|chr3:149741389:149741718:-	0	-
#Deleted in new
chr3	149822517	149822573	ENSG00000082996.19|RNF13|pc|chr3:149822517:149822573:+	0	+
#Duplicated in new
chr3	149965856	149966264	ENSG00000070087.13|PFN2|pc|chr3:149965856:149966264:-	0	-
#Duplicated in new
chr3	149966052	149966264	ENSG00000070087.13|PFN2|pc|chr3:149966052:149966264:-	0	-
#Deleted in new
chr3	149978097	149978224	ENSG00000242791.2|AC117395.3|lncRNA|chr3:149978097:149978224:+	0	+
#Deleted in new
chr3	149978111	149978224	ENSG00000242791.2|AC117395.3|lncRNA|chr3:149978111:149978224:+	0	+
#Deleted in new
chr3	149979151	149979328	ENSG00000242791.2|AC117395.3|lncRNA|chr3:149979151:149979328:+	0	+
#Deleted in new
chr3	149979151	149979355	ENSG00000242791.2|AC117395.3|lncRNA|chr3:149979151:149979355:+	0	+
#Deleted in new
chr3	150022619	150022811	ENSG00000070087.13|PFN2|pc|chr3:150022619:150022811:-	0	-
#Deleted in new
chr3	150039213	150039259	ENSG00000243944.5|AC117386.2|lncRNA|chr3:150039213:150039259:+	0	+
#Deleted in new
chr3	150096442	150096597	ENSG00000243944.5|AC117386.2|lncRNA|chr3:150096442:150096597:+	0	+
#Deleted in new
chr3	150202173	150202348	ENSG00000241048.1|AC117386.1|lncRNA|chr3:150202173:150202348:-	0	-
#Partially deleted in new
chr3	150203197	150203279	ENSG00000241048.1|AC117386.1|lncRNA|chr3:150203197:150203279:-	0	-
#Deleted in new
chr3	150213381	150213614	ENSG00000243944.5|AC117386.2|lncRNA|chr3:150213381:150213614:+	0	+
#Deleted in new
chr3	150213381	150213726	ENSG00000243944.5|AC117386.2|lncRNA|chr3:150213381:150213726:+	0	+
#Deleted in new
chr3	150224236	150224344	ENSG00000241048.1|AC117386.1|lncRNA|chr3:150224236:150224344:-	0	-
#Deleted in new
chr3	150224920	150225000	ENSG00000241048.1|AC117386.1|lncRNA|chr3:150224920:150225000:-	0	-
#Deleted in new
chr3	150225074	150225190	ENSG00000241048.1|AC117386.1|lncRNA|chr3:150225074:150225190:-	0	-
#Deleted in new
chr3	150239879	150240203	ENSG00000244541.5|LINC01213|lncRNA|chr3:150239879:150240203:+	0	+
#Deleted in new
chr3	150239879	150240209	ENSG00000244541.5|LINC01213|lncRNA|chr3:150239879:150240209:+	0	+
#Deleted in new
chr3	15025564	15027009	ENSG00000177463.15|NR2C2|pc|chr3:15025564:15027009:+	0	+
#Deleted in new
chr3	150287343	150287373	ENSG00000243550.2|LINC01214|lncRNA|chr3:150287343:150287373:-	0	-
#Partially deleted in new
chr3	15049211	15049935	ENSG00000131368.7|MRPS25|pc|chr3:15049211:15049935:-	0	-
#Deleted in new
chr3	15049707	15049967	ENSG00000131368.7|MRPS25|pc|chr3:15049707:15049967:-	0	-
#Deleted in new
chr3	15049707	15050102	ENSG00000131368.7|MRPS25|pc|chr3:15049707:15050102:-	0	-
#Deleted in new
chr3	15049880	15049935	ENSG00000131368.7|MRPS25|pc|chr3:15049880:15049935:-	0	-
#Deleted in new
chr3	150557584	150557678	ENSG00000144895.11|EIF2A|pc|chr3:150557584:150557678:+	0	+
#Deleted in new
chr3	150565190	150565226	ENSG00000144895.11|EIF2A|pc|chr3:150565190:150565226:+	0	+
#Deleted in new
chr3	150585393	150585492	ENSG00000120742.10|SERP1|pc|chr3:150585393:150585492:-	0	-
#Partially deleted in new
chr3	150602874	150603004	ENSG00000198843.12|SELENOT|pc|chr3:150602874:150603004:+	0	+
#Deleted in new
chr3	150614572	150614583	ENSG00000198843.12|SELENOT|pc|chr3:150614572:150614583:+	0	+
#Deleted in new
chr3	150618708	150618803	ENSG00000198843.12|SELENOT|pc|chr3:150618708:150618803:+	0	+
#Deleted in new
chr3	150618708	150618928	ENSG00000198843.12|SELENOT|pc|chr3:150618708:150618928:+	0	+
#Deleted in new
chr3	150673955	150674041	ENSG00000163645.14|ERICH6|pc|chr3:150673955:150674041:-	0	-
#Deleted in new
chr3	150678408	150678554	ENSG00000163645.14|ERICH6|pc|chr3:150678408:150678554:-	0	-
#Deleted in new
chr3	150706926	150707171	ENSG00000240137.5|ERICH6-AS1|lncRNA|chr3:150706926:150707171:+	0	+
#Deleted in new
chr3	150707931	150708009	ENSG00000240137.5|ERICH6-AS1|lncRNA|chr3:150707931:150708009:+	0	+
#Deleted in new
chr3	150707966	150708009	ENSG00000240137.5|ERICH6-AS1|lncRNA|chr3:150707966:150708009:+	0	+
#Deleted in new
chr3	150719446	150719548	ENSG00000240137.5|ERICH6-AS1|lncRNA|chr3:150719446:150719548:+	0	+
#Partially deleted in new
chr3	15081054	15081334	ENSG00000131381.12|RBSN|pc|chr3:15081054:15081334:-	0	-
#Deleted in new
chr3	150852483	150852606	ENSG00000239265.5|CLRN1-AS1|lncRNA|chr3:150852483:150852606:+	0	+
#Deleted in new
chr3	15091338	15091493	ENSG00000131381.12|RBSN|pc|chr3:15091338:15091493:-	0	-
#Deleted in new
chr3	150943819	150943991	ENSG00000163646.10|CLRN1|pc|chr3:150943819:150943991:-	0	-
#Deleted in new
chr3	150943819	150944236	ENSG00000163646.10|CLRN1|pc|chr3:150943819:150944236:-	0	-
#Partially deleted in new
chr3	15096534	15096710	ENSG00000131381.12|RBSN|pc|chr3:15096534:15096710:-	0	-
#Deleted in new
chr3	151001573	151001629	ENSG00000243273.1|AC020636.1|lncRNA|chr3:151001573:151001629:+	0	+
#Deleted in new
chr3	151065012	151065076	ENSG00000239265.5|CLRN1-AS1|lncRNA|chr3:151065012:151065076:+	0	+
#Deleted in new
chr3	151066309	151066429	ENSG00000239265.5|CLRN1-AS1|lncRNA|chr3:151066309:151066429:+	0	+
#Deleted in new
chr3	151200908	151200997	ENSG00000174946.6|GPR171|pc|chr3:151200908:151200997:-	0	-
#Deleted in new
chr3	151219534	151219642	ENSG00000174944.8|P2RY14|pc|chr3:151219534:151219642:-	0	-
#Deleted in new
chr3	151241795	151241868	ENSG00000144893.12|MED12L|pc|chr3:151241795:151241868:+	0	+
#Deleted in new
chr3	151261386	151261438	ENSG00000174944.8|P2RY14|pc|chr3:151261386:151261438:-	0	-
#Deleted in new
chr3	151425383	151425740	ENSG00000152580.8|IGSF10|pc|chr3:151425383:151425740:-	0	-
#Deleted in new
chr3	151440574	151440771	ENSG00000152580.8|IGSF10|pc|chr3:151440574:151440771:-	0	-
#Deleted in new
chr3	151440727	151440780	ENSG00000152580.8|IGSF10|pc|chr3:151440727:151440780:-	0	-
#Deleted in new
chr3	151637173	151637272	ENSG00000241151.1|LINC02066|lncRNA|chr3:151637173:151637272:+	0	+
#Deleted in new
chr3	151642706	151642875	ENSG00000241151.1|LINC02066|lncRNA|chr3:151642706:151642875:+	0	+
#Deleted in new
chr3	151657654	151657966	ENSG00000241151.1|LINC02066|lncRNA|chr3:151657654:151657966:+	0	+
#Deleted in new
chr3	151751442	151751511	ENSG00000242908.6|AADACL2-AS1|lncRNA|chr3:151751442:151751511:-	0	-
#Deleted in new
chr3	151751470	151751511	ENSG00000242908.6|AADACL2-AS1|lncRNA|chr3:151751470:151751511:-	0	-
#Deleted in new
chr3	151755071	151755131	ENSG00000242908.6|AADACL2-AS1|lncRNA|chr3:151755071:151755131:-	0	-
#Split in new
chr3	151756991	151761339	ENSG00000197953.5|AADACL2|pc|chr3:151756991:151761339:+	0	+
#Deleted in new
chr3	151774605	151774665	ENSG00000242908.6|AADACL2-AS1|lncRNA|chr3:151774605:151774665:-	0	-
#Deleted in new
chr3	151917614	151917741	ENSG00000242908.6|AADACL2-AS1|lncRNA|chr3:151917614:151917741:-	0	-
#Deleted in new
chr3	151927856	151928168	ENSG00000242908.6|AADACL2-AS1|lncRNA|chr3:151927856:151928168:-	0	-
#Deleted in new
chr3	151927856	151928175	ENSG00000242908.6|AADACL2-AS1|lncRNA|chr3:151927856:151928175:-	0	-
#Partially deleted in new
chr3	152118172	152118667	ENSG00000239941.1|AC108718.1|lncRNA|chr3:152118172:152118667:-	0	-
#Deleted in new
chr3	152243827	152244040	ENSG00000152601.17|MBNL1|pc|chr3:152243827:152244040:+	0	+
#Partially deleted in new
chr3	15232110	15232158	ENSG00000131375.9|CAPN7|pc|chr3:15232110:15232158:+	0	+
#Deleted in new
chr3	152396166	152396224	ENSG00000152601.17|MBNL1|pc|chr3:152396166:152396224:+	0	+
#Deleted in new
chr3	15264295	15264493	ENSG00000224660.1|SH3BP5-AS1|lncRNA|chr3:15264295:15264493:+	0	+
#Deleted in new
chr3	152650359	152650447	ENSG00000244545.1|AC092924.1|lncRNA|chr3:152650359:152650447:+	0	+
#Deleted in new
chr3	15271600	15271671	ENSG00000131370.15|SH3BP5|pc|chr3:15271600:15271671:-	0	-
#Deleted in new
chr3	15273115	15273405	ENSG00000131370.15|SH3BP5|pc|chr3:15273115:15273405:-	0	-
#Deleted in new
chr3	15275667	15275909	ENSG00000131370.15|SH3BP5|pc|chr3:15275667:15275909:-	0	-
#Deleted in new
chr3	15275667	15276045	ENSG00000131370.15|SH3BP5|pc|chr3:15275667:15276045:-	0	-
#Partially deleted in new
chr3	153156510	153156703	ENSG00000244268.1|AC117394.2|lncRNA|chr3:153156510:153156703:-	0	-
#Deleted in new
chr3	153357106	153357239	ENSG00000241220.1|AC078788.1|lncRNA|chr3:153357106:153357239:+	0	+
#Deleted in new
chr3	153373685	153374186	ENSG00000241220.1|AC078788.1|lncRNA|chr3:153373685:153374186:+	0	+
#Deleted in new
chr3	153376830	153376895	ENSG00000241912.1|AC078788.2|lncRNA|chr3:153376830:153376895:+	0	+
#Deleted in new
chr3	153377245	153377562	ENSG00000241912.1|AC078788.2|lncRNA|chr3:153377245:153377562:+	0	+
#Deleted in new
chr3	15341222	15341237	ENSG00000131370.15|SH3BP5|pc|chr3:15341222:15341237:-	0	-
#Deleted in new
chr3	15341222	15341368	ENSG00000131370.15|SH3BP5|pc|chr3:15341222:15341368:-	0	-
#Deleted in new
chr3	153440482	153440599	ENSG00000243012.1|LINC02083|lncRNA|chr3:153440482:153440599:+	0	+
#Deleted in new
chr3	153443273	153443531	ENSG00000243012.1|LINC02083|lncRNA|chr3:153443273:153443531:+	0	+
#Deleted in new
chr3	153484494	153484688	ENSG00000237787.4|C3orf79|lncRNA|chr3:153484494:153484688:+	0	+
#Deleted in new
chr3	153486014	153486105	ENSG00000237787.4|C3orf79|lncRNA|chr3:153486014:153486105:+	0	+
#Deleted in new
chr3	153534542	153534663	ENSG00000238755.3|LINC02006|lncRNA|chr3:153534542:153534663:-	0	-
#Deleted in new
chr3	153604645	153604745	ENSG00000238755.3|LINC02006|lncRNA|chr3:153604645:153604745:-	0	-
#Deleted in new
chr3	153672174	153672257	ENSG00000238755.3|LINC02006|lncRNA|chr3:153672174:153672257:-	0	-
#Deleted in new
chr3	153762502	153762526	ENSG00000238755.3|LINC02006|lncRNA|chr3:153762502:153762526:-	0	-
#Deleted in new
chr3	15381274	15384187	ENSG00000206562.11|METTL6|pc|chr3:15381274:15384187:-	0	-
#Deleted in new
chr3	15383642	15384187	ENSG00000206562.11|METTL6|pc|chr3:15383642:15384187:-	0	-
#Deleted in new
chr3	15383901	15384187	ENSG00000206562.11|METTL6|pc|chr3:15383901:15384187:-	0	-
#Deleted in new
chr3	15384480	15384573	ENSG00000206562.11|METTL6|pc|chr3:15384480:15384573:-	0	-
#Deleted in new
chr3	153881525	153881548	ENSG00000243486.1|AC068985.1|lncRNA|chr3:153881525:153881548:+	0	+
#Deleted in new
chr3	153920350	153920415	ENSG00000243486.1|AC068985.1|lncRNA|chr3:153920350:153920415:+	0	+
#Deleted in new
chr3	153940532	153940836	ENSG00000243486.1|AC068985.1|lncRNA|chr3:153940532:153940836:+	0	+
#Deleted in new
chr3	153979929	153980186	ENSG00000238755.3|LINC02006|lncRNA|chr3:153979929:153980186:-	0	-
#Deleted in new
chr3	15399387	15399491	ENSG00000206562.11|METTL6|pc|chr3:15399387:15399491:-	0	-
#Split in new
chr3	154024400	154026642	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154024400:154026642:-	0	-
#Deleted in new
chr3	154026476	154026642	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154026476:154026642:-	0	-
#Deleted in new
chr3	154026478	154026642	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154026478:154026642:-	0	-
#Deleted in new
chr3	154026528	154026642	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154026528:154026642:-	0	-
#Deleted in new
chr3	154026542	154026642	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154026542:154026642:-	0	-
#Deleted in new
chr3	154026543	154026642	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154026543:154026642:-	0	-
#Deleted in new
chr3	154026577	154026642	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154026577:154026642:-	0	-
#Deleted in new
chr3	154026579	154026642	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154026579:154026642:-	0	-
#Deleted in new
chr3	154028405	154028562	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154028405:154028562:-	0	-
#Deleted in new
chr3	154030276	154030364	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154030276:154030364:-	0	-
#Deleted in new
chr3	154030276	154030376	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154030276:154030376:-	0	-
#Deleted in new
chr3	154030276	154030379	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154030276:154030379:-	0	-
#Deleted in new
chr3	154030276	154031519	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154030276:154031519:-	0	-
#Deleted in new
chr3	154037596	154037654	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154037596:154037654:-	0	-
#Deleted in new
chr3	154039384	154039666	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154039384:154039666:-	0	-
#Deleted in new
chr3	154084681	154085263	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154084681:154085263:-	0	-
#Deleted in new
chr3	154108668	154108785	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154108668:154108785:-	0	-
#Deleted in new
chr3	154108881	154109131	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154108881:154109131:-	0	-
#Deleted in new
chr3	154110102	154110351	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154110102:154110351:-	0	-
#Deleted in new
chr3	154119685	154119783	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154119685:154119783:-	0	-
#Deleted in new
chr3	154119685	154119808	ENSG00000243069.7|ARHGEF26-AS1|lncRNA|chr3:154119685:154119808:-	0	-
#Deleted in new
chr3	15414373	15414914	ENSG00000206562.11|METTL6|pc|chr3:15414373:15414914:-	0	-
#Deleted in new
chr3	15414729	15414914	ENSG00000206562.11|METTL6|pc|chr3:15414729:15414914:-	0	-
#Partially deleted in new
chr3	154278494	154280669	ENSG00000174953.13|DHX36|pc|chr3:154278494:154280669:-	0	-
#Deleted in new
chr3	154319080	154319284	ENSG00000174953.13|DHX36|pc|chr3:154319080:154319284:-	0	-
#Partially deleted in new
chr3	15441488	15441663	ENSG00000249786.7|EAF1-AS1|lncRNA|chr3:15441488:15441663:-	0	-
#Partially deleted in new
chr3	15441488	15441669	ENSG00000249786.7|EAF1-AS1|lncRNA|chr3:15441488:15441669:-	0	-
#Partially deleted in new
chr3	15441511	15441669	ENSG00000249786.7|EAF1-AS1|lncRNA|chr3:15441511:15441669:-	0	-
#Deleted in new
chr3	15442985	15443456	ENSG00000249786.7|EAF1-AS1|lncRNA|chr3:15442985:15443456:-	0	-
#Deleted in new
chr3	15443070	15443477	ENSG00000249786.7|EAF1-AS1|lncRNA|chr3:15443070:15443477:-	0	-
#Deleted in new
chr3	15443402	15443560	ENSG00000249786.7|EAF1-AS1|lncRNA|chr3:15443402:15443560:-	0	-
#Deleted in new
chr3	15444033	15444069	ENSG00000249786.7|EAF1-AS1|lncRNA|chr3:15444033:15444069:-	0	-
#Partially deleted in new
chr3	15447473	15447845	ENSG00000249786.7|EAF1-AS1|lncRNA|chr3:15447473:15447845:-	0	-
#Deleted in new
chr3	154511534	154511769	ENSG00000243861.1|AC092994.1|lncRNA|chr3:154511534:154511769:-	0	-
#Deleted in new
chr3	155089833	155089880	ENSG00000196549.10|MME|pc|chr3:155089833:155089880:+	0	+
#Partially deleted in new
chr3	155240944	155241625	ENSG00000241336.1|LINC01487|lncRNA|chr3:155240944:155241625:+	0	+
#Deleted in new
chr3	155240947	155240978	ENSG00000241336.1|LINC01487|lncRNA|chr3:155240947:155240978:+	0	+
#Partially deleted in new
chr3	155290228	155290846	ENSG00000240045.1|DWORF|pc|chr3:155290228:155290846:-	0	-
#Deleted in new
chr3	155449183	155449425	ENSG00000239508.1|PLCH1-AS1|lncRNA|chr3:155449183:155449425:+	0	+
#Deleted in new
chr3	155456687	155457753	ENSG00000239508.1|PLCH1-AS1|lncRNA|chr3:155456687:155457753:+	0	+
#Deleted in new
chr3	155804050	155804173	ENSG00000174928.15|C3orf33|pc|chr3:155804050:155804173:-	0	-
#Deleted in new
chr3	155805596	155805723	ENSG00000174928.15|C3orf33|pc|chr3:155805596:155805723:-	0	-
#Partially deleted in new
chr3	155821023	155828377	ENSG00000169359.13|SLC33A1|pc|chr3:155821023:155828377:-	0	-
#Deleted in new
chr3	155826525	155826819	ENSG00000169359.13|SLC33A1|pc|chr3:155826525:155826819:-	0	-
#Partially deleted in new
chr3	155844717	155845076	ENSG00000169359.13|SLC33A1|pc|chr3:155844717:155845076:-	0	-
#Deleted in new
chr3	155895412	155895546	ENSG00000163655.15|GMPS|pc|chr3:155895412:155895546:+	0	+
#Partially deleted in new
chr3	15595914	15596424	ENSG00000131373.14|HACL1|pc|chr3:15595914:15596424:-	0	-
#Deleted in new
chr3	156215559	156215738	ENSG00000240596.1|KCNAB1-AS2|lncRNA|chr3:156215559:156215738:-	0	-
#Deleted in new
chr3	156217976	156218036	ENSG00000240596.1|KCNAB1-AS2|lncRNA|chr3:156217976:156218036:-	0	-
#Deleted in new
chr3	156273552	156273676	ENSG00000169282.17|KCNAB1|pc|chr3:156273552:156273676:+	0	+
#Deleted in new
chr3	15630001	15630120	ENSG00000169814.12|BTD|pc|chr3:15630001:15630120:+	0	+
#Deleted in new
chr3	15631426	15631495	ENSG00000169814.12|BTD|pc|chr3:15631426:15631495:+	0	+
#Deleted in new
chr3	156382141	156382208	ENSG00000169282.17|KCNAB1|pc|chr3:156382141:156382208:+	0	+
#Deleted in new
chr3	156446033	156446096	ENSG00000242370.1|KCNAB1-AS1|lncRNA|chr3:156446033:156446096:-	0	-
#Deleted in new
chr3	156446784	156446905	ENSG00000242370.1|KCNAB1-AS1|lncRNA|chr3:156446784:156446905:-	0	-
#Partially deleted in new
chr3	156452898	156453260	ENSG00000169282.17|KCNAB1|pc|chr3:156452898:156453260:+	0	+
#Deleted in new
chr3	156455992	156456120	ENSG00000169282.17|KCNAB1|pc|chr3:156455992:156456120:+	0	+
#Deleted in new
chr3	156753062	156753452	ENSG00000240875.5|LINC00886|lncRNA|chr3:156753062:156753452:-	0	-
#Partially deleted in new
chr3	15683741	15685445	ENSG00000206560.11|ANKRD28|pc|chr3:15683741:15685445:-	0	-
#Deleted in new
chr3	156853319	156853325	ENSG00000197980.12|LEKR1|pc|chr3:156853319:156853325:+	0	+
#Deleted in new
chr3	156924494	156924625	ENSG00000197980.12|LEKR1|pc|chr3:156924494:156924625:+	0	+
#Deleted in new
chr3	156924494	156925256	ENSG00000197980.12|LEKR1|pc|chr3:156924494:156925256:+	0	+
#Deleted in new
chr3	156979818	156980028	ENSG00000197980.12|LEKR1|pc|chr3:156979818:156980028:+	0	+
#Deleted in new
chr3	157100685	157101135	ENSG00000241135.5|LINC00881|lncRNA|chr3:157100685:157101135:+	0	+
#Deleted in new
chr3	157101934	157102092	ENSG00000243629.1|LINC00880|lncRNA|chr3:157101934:157102092:-	0	-
#Deleted in new
chr3	157103357	157103479	ENSG00000243629.1|LINC00880|lncRNA|chr3:157103357:157103479:-	0	-
#Deleted in new
chr3	157146507	157146607	ENSG00000163660.11|CCNL1|pc|chr3:157146507:157146607:-	0	-
#Partially deleted in new
chr3	157153498	157153628	ENSG00000163660.11|CCNL1|pc|chr3:157153498:157153628:-	0	-
#Deleted in new
chr3	15731876	15732536	ENSG00000279465.1|AC090950.2|lncRNA|chr3:15731876:15732536:+	0	+
#Deleted in new
chr3	157381593	157381673	ENSG00000197415.11|VEPH1|pc|chr3:157381593:157381673:-	0	-
#Deleted in new
chr3	157415127	157415270	ENSG00000197415.11|VEPH1|pc|chr3:157415127:157415270:-	0	-
#Deleted in new
chr3	157489054	157489160	ENSG00000197415.11|VEPH1|pc|chr3:157489054:157489160:-	0	-
#Deleted in new
chr3	157489054	157489356	ENSG00000197415.11|VEPH1|pc|chr3:157489054:157489356:-	0	-
#Deleted in new
chr3	157489060	157489160	ENSG00000197415.11|VEPH1|pc|chr3:157489060:157489160:-	0	-
#Deleted in new
chr3	157553229	157553340	ENSG00000174899.10|PQLC2L|pc|chr3:157553229:157553340:+	0	+
#Deleted in new
chr3	15756479	15756548	ENSG00000206560.11|ANKRD28|pc|chr3:15756479:15756548:-	0	-
#Deleted in new
chr3	15756483	15756547	ENSG00000206560.11|ANKRD28|pc|chr3:15756483:15756547:-	0	-
#Deleted in new
chr3	157569306	157569836	ENSG00000174899.10|PQLC2L|pc|chr3:157569306:157569836:+	0	+
#Deleted in new
chr3	157569306	157569912	ENSG00000174899.10|PQLC2L|pc|chr3:157569306:157569912:+	0	+
#Deleted in new
chr3	157571176	157571306	ENSG00000174899.10|PQLC2L|pc|chr3:157571176:157571306:+	0	+
#Deleted in new
chr3	15781436	15781655	ENSG00000206560.11|ANKRD28|pc|chr3:15781436:15781655:-	0	-
#Deleted in new
chr3	158017063	158017168	ENSG00000242536.1|AC079943.2|lncRNA|chr3:158017063:158017168:-	0	-
#Deleted in new
chr3	158132085	158132263	ENSG00000174891.12|RSRC1|pc|chr3:158132085:158132263:+	0	+
#Deleted in new
chr3	158469343	158469732	ENSG00000174891.12|RSRC1|pc|chr3:158469343:158469732:+	0	+
#Deleted in new
chr3	158553857	158554041	ENSG00000243150.5|AC106707.1|lncRNA|chr3:158553857:158554041:-	0	-
#Deleted in new
chr3	158553861	158554041	ENSG00000243150.5|AC106707.1|lncRNA|chr3:158553861:158554041:-	0	-
#Partially deleted in new
chr3	158570768	158570907	ENSG00000243150.5|AC106707.1|lncRNA|chr3:158570768:158570907:-	0	-
#Deleted in new
chr3	158582655	158582929	ENSG00000178053.17|MLF1|pc|chr3:158582655:158582929:+	0	+
#Deleted in new
chr3	158582834	158582929	ENSG00000178053.17|MLF1|pc|chr3:158582834:158582929:+	0	+
#Deleted in new
chr3	158588851	158588924	ENSG00000178053.17|MLF1|pc|chr3:158588851:158588924:+	0	+
#Deleted in new
chr3	158588859	158588924	ENSG00000178053.17|MLF1|pc|chr3:158588859:158588924:+	0	+
#Partially deleted in new
chr3	158649040	158651020	ENSG00000168827.14|GFM1|pc|chr3:158649040:158651020:+	0	+
#Deleted in new
chr3	158650004	158650061	ENSG00000168827.14|GFM1|pc|chr3:158650004:158650061:+	0	+
#Deleted in new
chr3	158655804	158657518	ENSG00000168827.14|GFM1|pc|chr3:158655804:158657518:+	0	+
#Deleted in new
chr3	158660263	158660624	ENSG00000168827.14|GFM1|pc|chr3:158660263:158660624:+	0	+
#Deleted in new
chr3	158695366	158695581	ENSG00000272440.1|AC080013.6|lncRNA|chr3:158695366:158695581:+	0	+
#Deleted in new
chr3	158705658	158705708	ENSG00000118849.9|RARRES1|pc|chr3:158705658:158705708:-	0	-
#Deleted in new
chr3	158733950	158734037	ENSG00000118855.18|MFSD1|pc|chr3:158733950:158734037:+	0	+
#Deleted in new
chr3	158733950	158734037	ENSG00000240207.6|AC080013.1|lncRNA|chr3:158733950:158734037:+	0	+
#Deleted in new
chr3	158734560	158734603	ENSG00000240207.6|AC080013.1|lncRNA|chr3:158734560:158734603:+	0	+
#Deleted in new
chr3	158735720	158737905	ENSG00000240207.6|AC080013.1|lncRNA|chr3:158735720:158737905:+	0	+
#Deleted in new
chr3	158736892	158737062	ENSG00000240207.6|AC080013.1|lncRNA|chr3:158736892:158737062:+	0	+
#Deleted in new
chr3	158740388	158740466	ENSG00000240207.6|AC080013.1|lncRNA|chr3:158740388:158740466:+	0	+
#Deleted in new
chr3	158740416	158740466	ENSG00000240207.6|AC080013.1|lncRNA|chr3:158740416:158740466:+	0	+
#Deleted in new
chr3	158740425	158740466	ENSG00000240207.6|AC080013.1|lncRNA|chr3:158740425:158740466:+	0	+
#Deleted in new
chr3	158742371	158742481	ENSG00000240207.6|AC080013.1|lncRNA|chr3:158742371:158742481:+	0	+
#Deleted in new
chr3	158747576	158748049	ENSG00000118855.18|MFSD1|pc|chr3:158747576:158748049:+	0	+
#Deleted in new
chr3	158771005	158771089	ENSG00000240207.6|AC080013.1|lncRNA|chr3:158771005:158771089:+	0	+
#Deleted in new
chr3	158783878	158784070	ENSG00000240207.6|AC080013.1|lncRNA|chr3:158783878:158784070:+	0	+
#Deleted in new
chr3	158825177	158825301	ENSG00000118855.18|MFSD1|pc|chr3:158825177:158825301:+	0	+
#Deleted in new
chr3	158962234	158962305	ENSG00000283154.2|IQCJ-SCHIP1|pc|chr3:158962234:158962305:+	0	+
#Deleted in new
chr3	159913399	159914474	ENSG00000244040.5|IL12A-AS1|lncRNA|chr3:159913399:159914474:-	0	-
#Deleted in new
chr3	159997843	159998105	ENSG00000244040.5|IL12A-AS1|lncRNA|chr3:159997843:159998105:-	0	-
#Deleted in new
chr3	160007781	160007875	ENSG00000244040.5|IL12A-AS1|lncRNA|chr3:160007781:160007875:-	0	-
#Deleted in new
chr3	160011465	160011551	ENSG00000244040.5|IL12A-AS1|lncRNA|chr3:160011465:160011551:-	0	-
#Deleted in new
chr3	160011664	160012110	ENSG00000244040.5|IL12A-AS1|lncRNA|chr3:160011664:160012110:-	0	-
#Deleted in new
chr3	160015695	160015861	ENSG00000244040.5|IL12A-AS1|lncRNA|chr3:160015695:160015861:-	0	-
#Deleted in new
chr3	160016023	160016080	ENSG00000242107.2|LINC01100|lncRNA|chr3:160016023:160016080:+	0	+
#Deleted in new
chr3	160019136	160019198	ENSG00000242107.2|LINC01100|lncRNA|chr3:160019136:160019198:+	0	+
#Deleted in new
chr3	160020645	160020744	ENSG00000242107.2|LINC01100|lncRNA|chr3:160020645:160020744:+	0	+
#Deleted in new
chr3	160026609	160026886	ENSG00000242107.2|LINC01100|lncRNA|chr3:160026609:160026886:+	0	+
#Deleted in new
chr3	160031178	160031423	ENSG00000242107.2|LINC01100|lncRNA|chr3:160031178:160031423:+	0	+
#Deleted in new
chr3	160188797	160188934	ENSG00000244040.5|IL12A-AS1|lncRNA|chr3:160188797:160188934:-	0	-
#Deleted in new
chr3	160299078	160299274	ENSG00000068885.14|IFT80|pc|chr3:160299078:160299274:-	0	-
#Deleted in new
chr3	160373491	160373672	ENSG00000068885.14|IFT80|pc|chr3:160373491:160373672:-	0	-
#Deleted in new
chr3	160377832	160377890	ENSG00000068885.14|IFT80|pc|chr3:160377832:160377890:-	0	-
#Deleted in new
chr3	160383436	160383504	ENSG00000068885.14|IFT80|pc|chr3:160383436:160383504:-	0	-
#Partially deleted in new
chr3	160383436	160383656	ENSG00000068885.14|IFT80|pc|chr3:160383436:160383656:-	0	-
#Deleted in new
chr3	160391545	160391643	ENSG00000068885.14|IFT80|pc|chr3:160391545:160391643:-	0	-
#Partially deleted in new
chr3	160394152	160394310	ENSG00000068885.14|IFT80|pc|chr3:160394152:160394310:-	0	-
#Partially deleted in new
chr3	160412529	160412849	ENSG00000113810.15|SMC4|pc|chr3:160412529:160412849:+	0	+
#Partially deleted in new
chr3	160412529	160412852	ENSG00000113810.15|SMC4|pc|chr3:160412529:160412852:+	0	+
#Partially deleted in new
chr3	160433656	160434953	ENSG00000113810.15|SMC4|pc|chr3:160433656:160434953:+	0	+
#Partially deleted in new
chr3	160433656	160434954	ENSG00000113810.15|SMC4|pc|chr3:160433656:160434954:+	0	+
#Partially deleted in new
chr3	160433656	160434962	ENSG00000113810.15|SMC4|pc|chr3:160433656:160434962:+	0	+
#Deleted in new
chr3	160485358	160485773	ENSG00000213186.7|TRIM59|pc|chr3:160485358:160485773:-	0	-
#Deleted in new
chr3	160882236	160882319	ENSG00000163590.13|PPM1L|pc|chr3:160882236:160882319:+	0	+
#Deleted in new
chr3	160939655	160939755	ENSG00000163590.13|PPM1L|pc|chr3:160939655:160939755:+	0	+
#Deleted in new
chr3	161022154	161022462	ENSG00000163590.13|PPM1L|pc|chr3:161022154:161022462:+	0	+
#Deleted in new
chr3	161035833	161036120	ENSG00000163590.13|PPM1L|pc|chr3:161035833:161036120:+	0	+
#Deleted in new
chr3	161089943	161090062	ENSG00000169255.13|B3GALNT1|pc|chr3:161089943:161090062:-	0	-
#Deleted in new
chr3	161089959	161090062	ENSG00000169255.13|B3GALNT1|pc|chr3:161089959:161090062:-	0	-
#Deleted in new
chr3	161090004	161090062	ENSG00000169255.13|B3GALNT1|pc|chr3:161090004:161090062:-	0	-
#Deleted in new
chr3	161090038	161090062	ENSG00000169255.13|B3GALNT1|pc|chr3:161090038:161090062:-	0	-
#Partially deleted in new
chr3	161103112	161103205	ENSG00000169255.13|B3GALNT1|pc|chr3:161103112:161103205:-	0	-
#Partially deleted in new
chr3	161103141	161103205	ENSG00000169255.13|B3GALNT1|pc|chr3:161103141:161103205:-	0	-
#Deleted in new
chr3	161156970	161157055	ENSG00000169251.12|NMD3|pc|chr3:161156970:161157055:+	0	+
#Partially deleted in new
chr3	161221556	161221735	ENSG00000169251.12|NMD3|pc|chr3:161221556:161221735:+	0	+
#Partially deleted in new
chr3	161221558	161222057	ENSG00000169251.12|NMD3|pc|chr3:161221558:161222057:+	0	+
#Deleted in new
chr3	161347964	161348103	ENSG00000196542.8|SPTSSB|pc|chr3:161347964:161348103:-	0	-
#Partially deleted in new
chr3	161426426	161427657	ENSG00000240567.1|LINC02067|lncRNA|chr3:161426426:161427657:+	0	+
#Partially deleted in new
chr3	16286341	16286448	ENSG00000154814.13|OXNAD1|pc|chr3:16286341:16286448:+	0	+
#Deleted in new
chr3	163026395	163026498	ENSG00000241168.1|AC128685.1|lncRNA|chr3:163026395:163026498:+	0	+
#Deleted in new
chr3	163127922	163128071	ENSG00000241369.5|LINC01192|lncRNA|chr3:163127922:163128071:-	0	-
#Deleted in new
chr3	16313573	16313692	ENSG00000131378.13|RFTN1|pc|chr3:16313573:16313692:-	0	-
#Deleted in new
chr3	16314438	16314987	ENSG00000271964.1|AC090948.1|lncRNA|chr3:16314438:16314987:+	0	+
#Partially deleted in new
chr3	163177242	163178101	ENSG00000241369.5|LINC01192|lncRNA|chr3:163177242:163178101:-	0	-
#Deleted in new
chr3	163177900	163178101	ENSG00000241369.5|LINC01192|lncRNA|chr3:163177900:163178101:-	0	-
#Deleted in new
chr3	163182830	163182910	ENSG00000241369.5|LINC01192|lncRNA|chr3:163182830:163182910:-	0	-
#Deleted in new
chr3	163182830	163182928	ENSG00000241369.5|LINC01192|lncRNA|chr3:163182830:163182928:-	0	-
#Deleted in new
chr3	163187067	163187264	ENSG00000241369.5|LINC01192|lncRNA|chr3:163187067:163187264:-	0	-
#Deleted in new
chr3	163199574	163199754	ENSG00000241369.5|LINC01192|lncRNA|chr3:163199574:163199754:-	0	-
#Deleted in new
chr3	163199576	163199754	ENSG00000241369.5|LINC01192|lncRNA|chr3:163199576:163199754:-	0	-
#Deleted in new
chr3	163199577	163199754	ENSG00000241369.5|LINC01192|lncRNA|chr3:163199577:163199754:-	0	-
#Deleted in new
chr3	163199622	163199754	ENSG00000241369.5|LINC01192|lncRNA|chr3:163199622:163199754:-	0	-
#Deleted in new
chr3	163199627	163199754	ENSG00000241369.5|LINC01192|lncRNA|chr3:163199627:163199754:-	0	-
#Deleted in new
chr3	163199873	163199951	ENSG00000241369.5|LINC01192|lncRNA|chr3:163199873:163199951:-	0	-
#Deleted in new
chr3	163201537	163201617	ENSG00000241369.5|LINC01192|lncRNA|chr3:163201537:163201617:-	0	-
#Deleted in new
chr3	163202081	163202249	ENSG00000241369.5|LINC01192|lncRNA|chr3:163202081:163202249:-	0	-
#Deleted in new
chr3	163203417	163203515	ENSG00000241369.5|LINC01192|lncRNA|chr3:163203417:163203515:-	0	-
#Deleted in new
chr3	163207642	163207757	ENSG00000241369.5|LINC01192|lncRNA|chr3:163207642:163207757:-	0	-
#Deleted in new
chr3	163207974	163208094	ENSG00000241168.1|AC128685.1|lncRNA|chr3:163207974:163208094:+	0	+
#Deleted in new
chr3	163219059	163219177	ENSG00000241369.5|LINC01192|lncRNA|chr3:163219059:163219177:-	0	-
#Deleted in new
chr3	163219915	163220187	ENSG00000241369.5|LINC01192|lncRNA|chr3:163219915:163220187:-	0	-
#Deleted in new
chr3	163220077	163220192	ENSG00000241168.1|AC128685.1|lncRNA|chr3:163220077:163220192:+	0	+
#Deleted in new
chr3	163220100	163220141	ENSG00000241369.5|LINC01192|lncRNA|chr3:163220100:163220141:-	0	-
#Deleted in new
chr3	163220100	163220187	ENSG00000241369.5|LINC01192|lncRNA|chr3:163220100:163220187:-	0	-
#Deleted in new
chr3	163228697	163228752	ENSG00000241168.1|AC128685.1|lncRNA|chr3:163228697:163228752:+	0	+
#Deleted in new
chr3	163230708	163232149	ENSG00000241168.1|AC128685.1|lncRNA|chr3:163230708:163232149:+	0	+
#Deleted in new
chr3	163249264	163249374	ENSG00000241369.5|LINC01192|lncRNA|chr3:163249264:163249374:-	0	-
#Deleted in new
chr3	163275195	163275319	ENSG00000241369.5|LINC01192|lncRNA|chr3:163275195:163275319:-	0	-
#Deleted in new
chr3	163278509	163278573	ENSG00000241369.5|LINC01192|lncRNA|chr3:163278509:163278573:-	0	-
#Deleted in new
chr3	163278509	163278603	ENSG00000241369.5|LINC01192|lncRNA|chr3:163278509:163278603:-	0	-
#Deleted in new
chr3	163303195	163303288	ENSG00000241369.5|LINC01192|lncRNA|chr3:163303195:163303288:-	0	-
#Deleted in new
chr3	163303237	163303301	ENSG00000241369.5|LINC01192|lncRNA|chr3:163303237:163303301:-	0	-
#Deleted in new
chr3	163303237	163303315	ENSG00000241369.5|LINC01192|lncRNA|chr3:163303237:163303315:-	0	-
#Deleted in new
chr3	163303237	163303317	ENSG00000241369.5|LINC01192|lncRNA|chr3:163303237:163303317:-	0	-
#Deleted in new
chr3	163303237	163303322	ENSG00000241369.5|LINC01192|lncRNA|chr3:163303237:163303322:-	0	-
#Deleted in new
chr3	163337144	163337236	ENSG00000241369.5|LINC01192|lncRNA|chr3:163337144:163337236:-	0	-
#Deleted in new
chr3	163361443	163361563	ENSG00000241369.5|LINC01192|lncRNA|chr3:163361443:163361563:-	0	-
#Deleted in new
chr3	16345125	16345243	ENSG00000272529.1|AC090948.3|lncRNA|chr3:16345125:16345243:+	0	+
#Deleted in new
chr3	16347596	16348032	ENSG00000154814.13|OXNAD1|pc|chr3:16347596:16348032:+	0	+
#Deleted in new
chr3	163478701	163479365	ENSG00000240792.1|AC079910.1|lncRNA|chr3:163478701:163479365:+	0	+
#Deleted in new
chr3	16349175	16349263	ENSG00000154814.13|OXNAD1|pc|chr3:16349175:16349263:+	0	+
#Deleted in new
chr3	16349175	16350299	ENSG00000154814.13|OXNAD1|pc|chr3:16349175:16350299:+	0	+
#Deleted in new
chr3	16434707	16434770	ENSG00000131378.13|RFTN1|pc|chr3:16434707:16434770:-	0	-
#Deleted in new
chr3	164670877	164671231	ENSG00000241636.1|LINC01323|lncRNA|chr3:164670877:164671231:-	0	-
#Deleted in new
chr3	164683816	164683901	ENSG00000241636.1|LINC01323|lncRNA|chr3:164683816:164683901:-	0	-
#Deleted in new
chr3	164714094	164714482	ENSG00000241767.2|LINC01324|lncRNA|chr3:164714094:164714482:-	0	-
#Deleted in new
chr3	164714100	164714482	ENSG00000241767.2|LINC01324|lncRNA|chr3:164714100:164714482:-	0	-
#Deleted in new
chr3	164717571	164717791	ENSG00000241767.2|LINC01324|lncRNA|chr3:164717571:164717791:-	0	-
#Deleted in new
chr3	16482745	16482865	ENSG00000131378.13|RFTN1|pc|chr3:16482745:16482865:-	0	-
#Deleted in new
chr3	164831413	164831480	ENSG00000241767.2|LINC01324|lncRNA|chr3:164831413:164831480:-	0	-
#Partially deleted in new
chr3	165150005	165151793	ENSG00000239205.1|LINC02023|lncRNA|chr3:165150005:165151793:-	0	-
#Deleted in new
chr3	165157902	165158062	ENSG00000239205.1|LINC02023|lncRNA|chr3:165157902:165158062:-	0	-
#Deleted in new
chr3	16530770	16530899	ENSG00000269391.1|AC010139.1|lncRNA|chr3:16530770:16530899:+	0	+
#Deleted in new
chr3	16531486	16531802	ENSG00000269391.1|AC010139.1|lncRNA|chr3:16531486:16531802:+	0	+
#Deleted in new
chr3	165345471	165345525	ENSG00000244128.5|LINC01322|lncRNA|chr3:165345471:165345525:+	0	+
#Deleted in new
chr3	16536319	16536494	ENSG00000233570.1|LINC00690|lncRNA|chr3:16536319:16536494:+	0	+
#Deleted in new
chr3	16539375	16539526	ENSG00000233570.1|LINC00690|lncRNA|chr3:16539375:16539526:+	0	+
#Deleted in new
chr3	165460451	165460533	ENSG00000244128.5|LINC01322|lncRNA|chr3:165460451:165460533:+	0	+
#Deleted in new
chr3	165460451	165460632	ENSG00000244128.5|LINC01322|lncRNA|chr3:165460451:165460632:+	0	+
#Deleted in new
chr3	165460538	165460632	ENSG00000244128.5|LINC01322|lncRNA|chr3:165460538:165460632:+	0	+
#Deleted in new
chr3	165491195	165491266	ENSG00000244128.5|LINC01322|lncRNA|chr3:165491195:165491266:+	0	+
#Deleted in new
chr3	165548837	165549149	ENSG00000244128.5|LINC01322|lncRNA|chr3:165548837:165549149:+	0	+
#Deleted in new
chr3	165580858	165581028	ENSG00000244128.5|LINC01322|lncRNA|chr3:165580858:165581028:+	0	+
#Deleted in new
chr3	165580858	165581054	ENSG00000244128.5|LINC01322|lncRNA|chr3:165580858:165581054:+	0	+
#Deleted in new
chr3	165616438	165616512	ENSG00000244128.5|LINC01322|lncRNA|chr3:165616438:165616512:+	0	+
#Deleted in new
chr3	165654108	165654195	ENSG00000244128.5|LINC01322|lncRNA|chr3:165654108:165654195:+	0	+
#Deleted in new
chr3	165655180	165655423	ENSG00000244128.5|LINC01322|lncRNA|chr3:165655180:165655423:+	0	+
#Deleted in new
chr3	165777716	165777795	ENSG00000114200.9|BCHE|pc|chr3:165777716:165777795:-	0	-
#Deleted in new
chr3	16637884	16638085	ENSG00000092345.13|DAZL|pc|chr3:16637884:16638085:-	0	-
#Deleted in new
chr3	16670277	16670306	ENSG00000092345.13|DAZL|pc|chr3:16670277:16670306:-	0	-
#Deleted in new
chr3	166835020	166835731	ENSG00000240033.1|AC069439.2|lncRNA|chr3:166835020:166835731:-	0	-
#Deleted in new
chr3	166844878	166844956	ENSG00000240033.1|AC069439.2|lncRNA|chr3:166844878:166844956:-	0	-
#Deleted in new
chr3	16687985	16688211	ENSG00000229271.1|AC091493.1|lncRNA|chr3:16687985:16688211:-	0	-
#Deleted in new
chr3	16697378	16697479	ENSG00000229271.1|AC091493.1|lncRNA|chr3:16697378:16697479:-	0	-
#Deleted in new
chr3	167248607	167248649	ENSG00000169064.12|ZBBX|pc|chr3:167248607:167248649:-	0	-
#Deleted in new
chr3	167252125	167252211	ENSG00000169064.12|ZBBX|pc|chr3:167252125:167252211:-	0	-
#Partially deleted in new
chr3	167366813	167366924	ENSG00000169064.12|ZBBX|pc|chr3:167366813:167366924:-	0	-
#Deleted in new
chr3	167373705	167373787	ENSG00000169064.12|ZBBX|pc|chr3:167373705:167373787:-	0	-
#Deleted in new
chr3	167381323	167381346	ENSG00000169064.12|ZBBX|pc|chr3:167381323:167381346:-	0	-
#Deleted in new
chr3	167399494	167399577	ENSG00000241669.1|LINC01327|lncRNA|chr3:167399494:167399577:+	0	+
#Deleted in new
chr3	167401336	167401437	ENSG00000241669.1|LINC01327|lncRNA|chr3:167401336:167401437:+	0	+
#Deleted in new
chr3	167566829	167566894	ENSG00000174776.10|WDR49|pc|chr3:167566829:167566894:-	0	-
#Deleted in new
chr3	167725400	167725473	ENSG00000114209.14|PDCD10|pc|chr3:167725400:167725473:-	0	-
#Deleted in new
chr3	167725400	167725477	ENSG00000114209.14|PDCD10|pc|chr3:167725400:167725477:-	0	-
#Partially deleted in new
chr3	167734458	167734482	ENSG00000114209.14|PDCD10|pc|chr3:167734458:167734482:-	0	-
#Deleted in new
chr3	167800045	167800122	ENSG00000163536.12|SERPINI1|pc|chr3:167800045:167800122:+	0	+
#Deleted in new
chr3	167870865	167870977	ENSG00000244706.2|AC026353.1|lncRNA|chr3:167870865:167870977:-	0	-
#Deleted in new
chr3	168291139	168291228	ENSG00000241882.1|AC124893.1|lncRNA|chr3:168291139:168291228:+	0	+
#Deleted in new
chr3	169565968	169566040	ENSG00000085276.17|MECOM|pc|chr3:169565968:169566040:-	0	-
#Deleted in new
chr3	169808022	169808079	ENSG00000171757.15|LRRC34|pc|chr3:169808022:169808079:-	0	-
#Deleted in new
chr3	169812409	169812514	ENSG00000171757.15|LRRC34|pc|chr3:169812409:169812514:-	0	-
#Deleted in new
chr3	169812409	169812525	ENSG00000171757.15|LRRC34|pc|chr3:169812409:169812525:-	0	-
#Deleted in new
chr3	169812409	169812664	ENSG00000171757.15|LRRC34|pc|chr3:169812409:169812664:-	0	-
#Deleted in new
chr3	169812409	169812986	ENSG00000171757.15|LRRC34|pc|chr3:169812409:169812986:-	0	-
#Deleted in new
chr3	169812569	169812690	ENSG00000171757.15|LRRC34|pc|chr3:169812569:169812690:-	0	-
#Deleted in new
chr3	169812569	169812932	ENSG00000171757.15|LRRC34|pc|chr3:169812569:169812932:-	0	-
#Deleted in new
chr3	169853222	169853732	ENSG00000114248.9|LRRC31|pc|chr3:169853222:169853732:-	0	-
#Deleted in new
chr3	169869632	169869833	ENSG00000114248.9|LRRC31|pc|chr3:169869632:169869833:-	0	-
#Partially deleted in new
chr3	169869632	169869865	ENSG00000114248.9|LRRC31|pc|chr3:169869632:169869865:-	0	-
#Partially deleted in new
chr3	169869632	169869874	ENSG00000114248.9|LRRC31|pc|chr3:169869632:169869874:-	0	-
#Partially deleted in new
chr3	169869632	169869930	ENSG00000114248.9|LRRC31|pc|chr3:169869632:169869930:-	0	-
#Deleted in new
chr3	169915366	169915441	ENSG00000187033.9|SAMD7|pc|chr3:169915366:169915441:+	0	+
#Deleted in new
chr3	169915366	169915464	ENSG00000187033.9|SAMD7|pc|chr3:169915366:169915464:+	0	+
#Deleted in new
chr3	169915410	169915441	ENSG00000187033.9|SAMD7|pc|chr3:169915410:169915441:+	0	+
#Duplicated in new
chr3	169943255	169949257	ENSG00000239219.2|AC008040.1|lncRNA|chr3:169943255:169949257:-	0	-
#Deleted in new
chr3	169978535	169978561	ENSG00000240373.1|SEC62-AS1|lncRNA|chr3:169978535:169978561:-	0	-
#Deleted in new
chr3	169985128	169985189	ENSG00000008952.16|SEC62|pc|chr3:169985128:169985189:+	0	+
#Partially deleted in new
chr3	169985395	169985715	ENSG00000240373.1|SEC62-AS1|lncRNA|chr3:169985395:169985715:-	0	-
#Deleted in new
chr3	170037928	170038215	ENSG00000173890.16|GPR160|pc|chr3:170037928:170038215:+	0	+
#Deleted in new
chr3	170038137	170038215	ENSG00000173890.16|GPR160|pc|chr3:170038137:170038215:+	0	+
#Deleted in new
chr3	170038198	170038215	ENSG00000173890.16|GPR160|pc|chr3:170038198:170038215:+	0	+
#Deleted in new
chr3	170038203	170038470	ENSG00000173890.16|GPR160|pc|chr3:170038203:170038470:+	0	+
#Deleted in new
chr3	170038785	170039043	ENSG00000173890.16|GPR160|pc|chr3:170038785:170039043:+	0	+
#Deleted in new
chr3	170038914	170039043	ENSG00000173890.16|GPR160|pc|chr3:170038914:170039043:+	0	+
#Deleted in new
chr3	170057840	170058031	ENSG00000173890.16|GPR160|pc|chr3:170057840:170058031:+	0	+
#Deleted in new
chr3	170077122	170077276	ENSG00000173890.16|GPR160|pc|chr3:170077122:170077276:+	0	+
#Deleted in new
chr3	170077122	170077341	ENSG00000173890.16|GPR160|pc|chr3:170077122:170077341:+	0	+
#Deleted in new
chr3	170077122	170077923	ENSG00000173890.16|GPR160|pc|chr3:170077122:170077923:+	0	+
#Deleted in new
chr3	170077133	170077416	ENSG00000173890.16|GPR160|pc|chr3:170077133:170077416:+	0	+
#Deleted in new
chr3	170077219	170077416	ENSG00000173890.16|GPR160|pc|chr3:170077219:170077416:+	0	+
#Deleted in new
chr3	170077602	170077971	ENSG00000173890.16|GPR160|pc|chr3:170077602:170077971:+	0	+
#Deleted in new
chr3	170083364	170083522	ENSG00000173890.16|GPR160|pc|chr3:170083364:170083522:+	0	+
#Partially deleted in new
chr3	170169717	170171450	ENSG00000173889.15|PHC3|pc|chr3:170169717:170171450:-	0	-
#Deleted in new
chr3	170412796	170412932	ENSG00000242578.1|AC073288.2|lncRNA|chr3:170412796:170412932:+	0	+
#Deleted in new
chr3	170413152	170413239	ENSG00000242578.1|AC073288.2|lncRNA|chr3:170413152:170413239:+	0	+
#Deleted in new
chr3	170433186	170433426	ENSG00000013297.10|CLDN11|pc|chr3:170433186:170433426:+	0	+
#Deleted in new
chr3	170434844	170434963	ENSG00000013297.10|CLDN11|pc|chr3:170434844:170434963:+	0	+
#Deleted in new
chr3	170502810	170503009	ENSG00000013297.10|CLDN11|pc|chr3:170502810:170503009:+	0	+
#Partially deleted in new
chr3	170570089	170570445	ENSG00000013293.5|SLC7A14|pc|chr3:170570089:170570445:-	0	-
#Partially deleted in new
chr3	170659402	170662123	ENSG00000244738.1|AC026316.3|lncRNA|chr3:170659402:170662123:+	0	+
#Partially deleted in new
chr3	170729355	170729695	ENSG00000013297.10|CLDN11|pc|chr3:170729355:170729695:+	0	+
#Deleted in new
chr3	170740350	170740533	ENSG00000239739.1|AC026316.2|lncRNA|chr3:170740350:170740533:-	0	-
#Deleted in new
chr3	170741285	170741365	ENSG00000239739.1|AC026316.2|lncRNA|chr3:170741285:170741365:-	0	-
#Partially deleted in new
chr3	17081187	17081546	ENSG00000154822.17|PLCL2|pc|chr3:17081187:17081546:+	0	+
#Deleted in new
chr3	170859982	170860380	ENSG00000013297.10|CLDN11|pc|chr3:170859982:170860380:+	0	+
#Partially deleted in new
chr3	170864874	170866524	ENSG00000163584.17|RPL22L1|pc|chr3:170864874:170866524:-	0	-
#Partially deleted in new
chr3	171653241	171654293	ENSG00000075651.15|PLD1|pc|chr3:171653241:171654293:-	0	-
#Deleted in new
chr3	171666257	171666305	ENSG00000075651.15|PLD1|pc|chr3:171666257:171666305:-	0	-
#Deleted in new
chr3	171721353	171721545	ENSG00000075651.15|PLD1|pc|chr3:171721353:171721545:-	0	-
#Deleted in new
chr3	171788566	171789535	ENSG00000075651.15|PLD1|pc|chr3:171788566:171789535:-	0	-
#Deleted in new
chr3	171788580	171789535	ENSG00000075651.15|PLD1|pc|chr3:171788580:171789535:-	0	-
#Deleted in new
chr3	171856662	171856704	ENSG00000186329.9|TMEM212|pc|chr3:171856662:171856704:+	0	+
#Deleted in new
chr3	171856662	171856707	ENSG00000186329.9|TMEM212|pc|chr3:171856662:171856707:+	0	+
#Deleted in new
chr3	171856662	171856974	ENSG00000186329.9|TMEM212|pc|chr3:171856662:171856974:+	0	+
#Deleted in new
chr3	171858060	171859318	ENSG00000186329.9|TMEM212|pc|chr3:171858060:171859318:+	0	+
#Deleted in new
chr3	171894435	171894523	ENSG00000235943.1|TMEM212-IT1|lncRNA|chr3:171894435:171894523:+	0	+
#Deleted in new
chr3	171894858	171895240	ENSG00000235943.1|TMEM212-IT1|lncRNA|chr3:171894858:171895240:+	0	+
#Deleted in new
chr3	171899173	171899265	ENSG00000234717.1|TMEM212-AS1|lncRNA|chr3:171899173:171899265:-	0	-
#Deleted in new
chr3	171927119	171927160	ENSG00000186329.9|TMEM212|pc|chr3:171927119:171927160:+	0	+
#Deleted in new
chr3	171938037	171938062	ENSG00000186329.9|TMEM212|pc|chr3:171938037:171938062:+	0	+
#Deleted in new
chr3	171938037	171938129	ENSG00000186329.9|TMEM212|pc|chr3:171938037:171938129:+	0	+
#Deleted in new
chr3	171938644	171938715	ENSG00000186329.9|TMEM212|pc|chr3:171938644:171938715:+	0	+
#Deleted in new
chr3	172184244	172184383	ENSG00000075420.12|FNDC3B|pc|chr3:172184244:172184383:+	0	+
#Partially deleted in new
chr3	172301653	172303052	ENSG00000279862.1|AC092964.1|lncRNA|chr3:172301653:172303052:-	0	-
#Partially deleted in new
chr3	172337329	172338324	ENSG00000075420.12|FNDC3B|pc|chr3:172337329:172338324:+	0	+
#Deleted in new
chr3	172507283	172507449	ENSG00000121858.10|TNFSF10|pc|chr3:172507283:172507449:-	0	-
#Deleted in new
chr3	172509145	172509321	ENSG00000121858.10|TNFSF10|pc|chr3:172509145:172509321:-	0	-
#Deleted in new
chr3	172509216	172509321	ENSG00000121858.10|TNFSF10|pc|chr3:172509216:172509321:-	0	-
#Deleted in new
chr3	172560887	172561069	ENSG00000223387.6|LINC02068|lncRNA|chr3:172560887:172561069:-	0	-
#Deleted in new
chr3	172560900	172561069	ENSG00000223387.6|LINC02068|lncRNA|chr3:172560900:172561069:-	0	-
#Deleted in new
chr3	172574272	172574340	ENSG00000223387.6|LINC02068|lncRNA|chr3:172574272:172574340:-	0	-
#Deleted in new
chr3	172590712	172593714	ENSG00000223387.6|LINC02068|lncRNA|chr3:172590712:172593714:-	0	-
#Deleted in new
chr3	172595402	172595427	ENSG00000223387.6|LINC02068|lncRNA|chr3:172595402:172595427:-	0	-
#Deleted in new
chr3	172752149	172752272	ENSG00000114346.13|ECT2|pc|chr3:172752149:172752272:+	0	+
#Deleted in new
chr3	173141102	173141268	ENSG00000144962.6|SPATA16|pc|chr3:173141102:173141268:-	0	-
#Deleted in new
chr3	173153736	173153758	ENSG00000237473.1|AC068759.1|lncRNA|chr3:173153736:173153758:+	0	+
#Deleted in new
chr3	173260474	173260549	ENSG00000237473.1|AC068759.1|lncRNA|chr3:173260474:173260549:+	0	+
#Deleted in new
chr3	173336547	173336594	ENSG00000237473.1|AC068759.1|lncRNA|chr3:173336547:173336594:+	0	+
#Deleted in new
chr3	173336758	173336965	ENSG00000237473.1|AC068759.1|lncRNA|chr3:173336758:173336965:+	0	+
#Partially deleted in new
chr3	17337388	17337636	ENSG00000131374.14|TBC1D5|pc|chr3:17337388:17337636:-	0	-
#Deleted in new
chr3	17338448	17338575	ENSG00000131374.14|TBC1D5|pc|chr3:17338448:17338575:-	0	-
#Deleted in new
chr3	17340654	17340695	ENSG00000131374.14|TBC1D5|pc|chr3:17340654:17340695:-	0	-
#Deleted in new
chr3	173920525	173920658	ENSG00000228213.5|NLGN1-AS1|lncRNA|chr3:173920525:173920658:-	0	-
#Deleted in new
chr3	173920525	173920796	ENSG00000228213.5|NLGN1-AS1|lncRNA|chr3:173920525:173920796:-	0	-
#Deleted in new
chr3	174136434	174136580	ENSG00000169760.17|NLGN1|pc|chr3:174136434:174136580:+	0	+
#Deleted in new
chr3	174136447	174136580	ENSG00000169760.17|NLGN1|pc|chr3:174136447:174136580:+	0	+
#Deleted in new
chr3	174136461	174136580	ENSG00000169760.17|NLGN1|pc|chr3:174136461:174136580:+	0	+
#Deleted in new
chr3	174180787	174180848	ENSG00000169760.17|NLGN1|pc|chr3:174180787:174180848:+	0	+
#Deleted in new
chr3	174513508	174513565	ENSG00000177694.15|NAALADL2|pc|chr3:174513508:174513565:+	0	+
#Deleted in new
chr3	174691972	174692056	ENSG00000177694.15|NAALADL2|pc|chr3:174691972:174692056:+	0	+
#Deleted in new
chr3	175081064	175081202	ENSG00000230292.5|NAALADL2-AS3|lncRNA|chr3:175081064:175081202:-	0	-
#Deleted in new
chr3	175112543	175112591	ENSG00000230292.5|NAALADL2-AS3|lncRNA|chr3:175112543:175112591:-	0	-
#Deleted in new
chr3	175112543	175112600	ENSG00000230292.5|NAALADL2-AS3|lncRNA|chr3:175112543:175112600:-	0	-
#Deleted in new
chr3	175124405	175124641	ENSG00000177694.15|NAALADL2|pc|chr3:175124405:175124641:+	0	+
#Deleted in new
chr3	17518901	17518995	ENSG00000131374.14|TBC1D5|pc|chr3:17518901:17518995:-	0	-
#Deleted in new
chr3	175218075	175218123	ENSG00000177694.15|NAALADL2|pc|chr3:175218075:175218123:+	0	+
#Deleted in new
chr3	17524584	17524694	ENSG00000131374.14|TBC1D5|pc|chr3:17524584:17524694:-	0	-
#Deleted in new
chr3	175581151	175581221	ENSG00000177694.15|NAALADL2|pc|chr3:175581151:175581221:+	0	+
#Deleted in new
chr3	17562018	17562142	ENSG00000131374.14|TBC1D5|pc|chr3:17562018:17562142:-	0	-
#Deleted in new
chr3	175655480	175655563	ENSG00000177694.15|NAALADL2|pc|chr3:175655480:175655563:+	0	+
#Deleted in new
chr3	17575202	17575310	ENSG00000131374.14|TBC1D5|pc|chr3:17575202:17575310:-	0	-
#Deleted in new
chr3	175776265	175776333	ENSG00000225552.1|NAALADL2-AS1|lncRNA|chr3:175776265:175776333:-	0	-
#Deleted in new
chr3	175938928	175941037	ENSG00000260217.1|AC104640.1|lncRNA|chr3:175938928:175941037:-	0	-
#Deleted in new
chr3	17646960	17647056	ENSG00000131374.14|TBC1D5|pc|chr3:17646960:17647056:-	0	-
#Deleted in new
chr3	176604142	176604686	ENSG00000223715.1|LINC01208|lncRNA|chr3:176604142:176604686:-	0	-
#Deleted in new
chr3	176626278	176626346	ENSG00000223715.1|LINC01208|lncRNA|chr3:176626278:176626346:-	0	-
#Deleted in new
chr3	176634344	176634457	ENSG00000223715.1|LINC01208|lncRNA|chr3:176634344:176634457:-	0	-
#Deleted in new
chr3	176634344	176634535	ENSG00000223715.1|LINC01208|lncRNA|chr3:176634344:176634535:-	0	-
#Deleted in new
chr3	176643940	176644123	ENSG00000232461.1|AC092920.1|lncRNA|chr3:176643940:176644123:-	0	-
#Deleted in new
chr3	176655554	176655669	ENSG00000232461.1|AC092920.1|lncRNA|chr3:176655554:176655669:-	0	-
#Deleted in new
chr3	176656549	176656731	ENSG00000232461.1|AC092920.1|lncRNA|chr3:176656549:176656731:-	0	-
#Partially deleted in new
chr3	176816173	176817001	ENSG00000228308.1|LINC01209|lncRNA|chr3:176816173:176817001:-	0	-
#Deleted in new
chr3	176853708	176853768	ENSG00000232461.1|AC092920.1|lncRNA|chr3:176853708:176853768:-	0	-
#Deleted in new
chr3	176867700	176867838	ENSG00000232461.1|AC092920.1|lncRNA|chr3:176867700:176867838:-	0	-
#Deleted in new
chr3	177032317	177032340	ENSG00000177565.16|TBL1XR1|pc|chr3:177032317:177032340:-	0	-
#Deleted in new
chr3	177032551	177032597	ENSG00000177565.16|TBL1XR1|pc|chr3:177032551:177032597:-	0	-
#Deleted in new
chr3	177032605	177032659	ENSG00000177565.16|TBL1XR1|pc|chr3:177032605:177032659:-	0	-
#Partially deleted in new
chr3	177037404	177037744	ENSG00000231310.3|TBL1XR1-AS1|lncRNA|chr3:177037404:177037744:+	0	+
#Deleted in new
chr3	177041071	177041181	ENSG00000177565.16|TBL1XR1|pc|chr3:177041071:177041181:-	0	-
#Deleted in new
chr3	177044860	177044984	ENSG00000231310.3|TBL1XR1-AS1|lncRNA|chr3:177044860:177044984:+	0	+
#Deleted in new
chr3	177044896	177044996	ENSG00000231310.3|TBL1XR1-AS1|lncRNA|chr3:177044896:177044996:+	0	+
#Deleted in new
chr3	177078631	177078778	ENSG00000177565.16|TBL1XR1|pc|chr3:177078631:177078778:-	0	-
#Partially deleted in new
chr3	177079453	177079945	ENSG00000177565.16|TBL1XR1|pc|chr3:177079453:177079945:-	0	-
#Partially deleted in new
chr3	177079886	177079945	ENSG00000177565.16|TBL1XR1|pc|chr3:177079886:177079945:-	0	-
#Deleted in new
chr3	177086964	177087041	ENSG00000177565.16|TBL1XR1|pc|chr3:177086964:177087041:-	0	-
#Deleted in new
chr3	177091150	177091180	ENSG00000177565.16|TBL1XR1|pc|chr3:177091150:177091180:-	0	-
#Deleted in new
chr3	177099404	177099447	ENSG00000177565.16|TBL1XR1|pc|chr3:177099404:177099447:-	0	-
#Deleted in new
chr3	177110808	177110887	ENSG00000177565.16|TBL1XR1|pc|chr3:177110808:177110887:-	0	-
#Deleted in new
chr3	177131362	177131449	ENSG00000177565.16|TBL1XR1|pc|chr3:177131362:177131449:-	0	-
#Deleted in new
chr3	177131376	177131449	ENSG00000177565.16|TBL1XR1|pc|chr3:177131376:177131449:-	0	-
#Deleted in new
chr3	177131377	177131449	ENSG00000177565.16|TBL1XR1|pc|chr3:177131377:177131449:-	0	-
#Deleted in new
chr3	177136216	177136245	ENSG00000177565.16|TBL1XR1|pc|chr3:177136216:177136245:-	0	-
#Deleted in new
chr3	177160870	177160988	ENSG00000177565.16|TBL1XR1|pc|chr3:177160870:177160988:-	0	-
#Deleted in new
chr3	177163977	177164001	ENSG00000177565.16|TBL1XR1|pc|chr3:177163977:177164001:-	0	-
#Deleted in new
chr3	177171389	177171417	ENSG00000177565.16|TBL1XR1|pc|chr3:177171389:177171417:-	0	-
#Deleted in new
chr3	177201738	177201817	ENSG00000177565.16|TBL1XR1|pc|chr3:177201738:177201817:-	0	-
#Deleted in new
chr3	177227867	177228000	ENSG00000177565.16|TBL1XR1|pc|chr3:177227867:177228000:-	0	-
#Deleted in new
chr3	177321428	177323418	ENSG00000203645.2|LINC00501|lncRNA|chr3:177321428:177323418:+	0	+
#Deleted in new
chr3	177338426	177338524	ENSG00000226782.2|AC117465.1|lncRNA|chr3:177338426:177338524:-	0	-
#Deleted in new
chr3	177441920	177442110	ENSG00000228221.5|LINC00578|lncRNA|chr3:177441920:177442110:+	0	+
#Deleted in new
chr3	177441963	177442110	ENSG00000228221.5|LINC00578|lncRNA|chr3:177441963:177442110:+	0	+
#Deleted in new
chr3	177539394	177539493	ENSG00000228221.5|LINC00578|lncRNA|chr3:177539394:177539493:+	0	+
#Deleted in new
chr3	177621381	177621945	ENSG00000236385.1|AC026355.2|lncRNA|chr3:177621381:177621945:-	0	-
#Deleted in new
chr3	177622626	177622703	ENSG00000236385.1|AC026355.2|lncRNA|chr3:177622626:177622703:-	0	-
#Deleted in new
chr3	177628205	177628287	ENSG00000236385.1|AC026355.2|lncRNA|chr3:177628205:177628287:-	0	-
#Deleted in new
chr3	177629416	177629555	ENSG00000228221.5|LINC00578|lncRNA|chr3:177629416:177629555:+	0	+
#Deleted in new
chr3	177687401	177687588	ENSG00000228561.2|AC026355.1|lncRNA|chr3:177687401:177687588:+	0	+
#Deleted in new
chr3	177816864	177816996	ENSG00000231574.5|LINC02015|lncRNA|chr3:177816864:177816996:+	0	+
#Partially deleted in new
chr3	177895612	177895776	ENSG00000231574.5|LINC02015|lncRNA|chr3:177895612:177895776:+	0	+
#Partially deleted in new
chr3	177896563	177896932	ENSG00000231574.5|LINC02015|lncRNA|chr3:177896563:177896932:+	0	+
#Partially deleted in new
chr3	177896563	177899224	ENSG00000231574.5|LINC02015|lncRNA|chr3:177896563:177899224:+	0	+
#Deleted in new
chr3	177937538	177937662	ENSG00000225790.1|AC007953.1|lncRNA|chr3:177937538:177937662:+	0	+
#Deleted in new
chr3	178333538	178335448	ENSG00000223930.5|AC109779.1|lncRNA|chr3:178333538:178335448:-	0	-
#Deleted in new
chr3	178335021	178335422	ENSG00000223930.5|AC109779.1|lncRNA|chr3:178335021:178335422:-	0	-
#Deleted in new
chr3	178335024	178335422	ENSG00000223930.5|AC109779.1|lncRNA|chr3:178335024:178335422:-	0	-
#Deleted in new
chr3	178371750	178371819	ENSG00000223930.5|AC109779.1|lncRNA|chr3:178371750:178371819:-	0	-
#Deleted in new
chr3	178419122	178419375	ENSG00000275163.1|AC117457.1|pc|chr3:178419122:178419375:+	0	+
#Deleted in new
chr3	178419200	178419375	ENSG00000223941.5|LINC01014|lncRNA|chr3:178419200:178419375:+	0	+
#Deleted in new
chr3	178419233	178419375	ENSG00000223941.5|LINC01014|lncRNA|chr3:178419233:178419375:+	0	+
#Deleted in new
chr3	178419257	178419375	ENSG00000223941.5|LINC01014|lncRNA|chr3:178419257:178419375:+	0	+
#Deleted in new
chr3	178746938	178747111	ENSG00000237978.5|KCNMB2-AS1|lncRNA|chr3:178746938:178747111:-	0	-
#Deleted in new
chr3	178757079	178757133	ENSG00000237978.5|KCNMB2-AS1|lncRNA|chr3:178757079:178757133:-	0	-
#Deleted in new
chr3	178757079	178757136	ENSG00000237978.5|KCNMB2-AS1|lncRNA|chr3:178757079:178757136:-	0	-
#Deleted in new
chr3	178824557	178824680	ENSG00000197584.11|KCNMB2|pc|chr3:178824557:178824680:+	0	+
#Deleted in new
chr3	178824557	178824682	ENSG00000197584.11|KCNMB2|pc|chr3:178824557:178824682:+	0	+
#Deleted in new
chr3	178841544	178841616	ENSG00000237978.5|KCNMB2-AS1|lncRNA|chr3:178841544:178841616:-	0	-
#Deleted in new
chr3	178859488	178859550	ENSG00000237978.5|KCNMB2-AS1|lncRNA|chr3:178859488:178859550:-	0	-
#Deleted in new
chr3	178859488	178859623	ENSG00000237978.5|KCNMB2-AS1|lncRNA|chr3:178859488:178859623:-	0	-
#Deleted in new
chr3	178860293	178860349	ENSG00000237978.5|KCNMB2-AS1|lncRNA|chr3:178860293:178860349:-	0	-
#Deleted in new
chr3	178860293	178860352	ENSG00000237978.5|KCNMB2-AS1|lncRNA|chr3:178860293:178860352:-	0	-
#Deleted in new
chr3	178860293	178860405	ENSG00000237978.5|KCNMB2-AS1|lncRNA|chr3:178860293:178860405:-	0	-
#Deleted in new
chr3	179101365	179101555	ENSG00000229102.1|AC076966.1|lncRNA|chr3:179101365:179101555:-	0	-
#Deleted in new
chr3	179132768	179132871	ENSG00000229102.1|AC076966.1|lncRNA|chr3:179132768:179132871:-	0	-
#Partially deleted in new
chr3	179251035	179251615	ENSG00000171121.16|KCNMB3|pc|chr3:179251035:179251615:-	0	-
#Deleted in new
chr3	179322990	179323291	ENSG00000121864.9|ZNF639|pc|chr3:179322990:179323291:+	0	+
#Deleted in new
chr3	179323075	179323291	ENSG00000121864.9|ZNF639|pc|chr3:179323075:179323291:+	0	+
#Deleted in new
chr3	179323245	179323291	ENSG00000121864.9|ZNF639|pc|chr3:179323245:179323291:+	0	+
#Deleted in new
chr3	179323762	179323844	ENSG00000121864.9|ZNF639|pc|chr3:179323762:179323844:+	0	+
#Deleted in new
chr3	179324949	179324993	ENSG00000121864.9|ZNF639|pc|chr3:179324949:179324993:+	0	+
#Deleted in new
chr3	179325041	179325322	ENSG00000121864.9|ZNF639|pc|chr3:179325041:179325322:+	0	+
#Deleted in new
chr3	179325152	179325322	ENSG00000121864.9|ZNF639|pc|chr3:179325152:179325322:+	0	+
#Deleted in new
chr3	179329933	179330055	ENSG00000121864.9|ZNF639|pc|chr3:179329933:179330055:+	0	+
#Partially deleted in new
chr3	179333268	179338583	ENSG00000121864.9|ZNF639|pc|chr3:179333268:179338583:+	0	+
#Deleted in new
chr3	179340321	179341887	ENSG00000260743.1|AC007823.1|lncRNA|chr3:179340321:179341887:+	0	+
#Deleted in new
chr3	179359719	179359860	ENSG00000171109.18|MFN1|pc|chr3:179359719:179359860:+	0	+
#Deleted in new
chr3	179397332	179397993	ENSG00000242539.2|AC007620.2|lncRNA|chr3:179397332:179397993:+	0	+
#Deleted in new
chr3	179397707	179397941	ENSG00000242539.2|AC007620.2|lncRNA|chr3:179397707:179397941:+	0	+
#Deleted in new
chr3	179398283	179398315	ENSG00000242539.2|AC007620.2|lncRNA|chr3:179398283:179398315:+	0	+
#Deleted in new
chr3	179398283	179398683	ENSG00000242539.2|AC007620.2|lncRNA|chr3:179398283:179398683:+	0	+
#Deleted in new
chr3	179398456	179399191	ENSG00000242539.2|AC007620.2|lncRNA|chr3:179398456:179399191:+	0	+
#Deleted in new
chr3	179410324	179410597	ENSG00000114450.9|GNB4|pc|chr3:179410324:179410597:-	0	-
#Deleted in new
chr3	179437740	179437899	ENSG00000114450.9|GNB4|pc|chr3:179437740:179437899:-	0	-
#Partially deleted in new
chr3	179574369	179575210	ENSG00000136518.16|ACTL6A|pc|chr3:179574369:179575210:+	0	+
#Deleted in new
chr3	179584270	179584410	ENSG00000272660.1|AC090425.1|lncRNA|chr3:179584270:179584410:-	0	-
#Deleted in new
chr3	179607757	179607812	ENSG00000136521.12|NDUFB5|pc|chr3:179607757:179607812:+	0	+
#Partially deleted in new
chr3	179623919	179627647	ENSG00000136521.12|NDUFB5|pc|chr3:179623919:179627647:+	0	+
#Deleted in new
chr3	179804062	179804366	ENSG00000270178.1|AC007687.1|lncRNA|chr3:179804062:179804366:+	0	+
#Deleted in new
chr3	18013225	18013234	ENSG00000274840.4|AC132807.2|lncRNA|chr3:18013225:18013234:+	0	+
#Deleted in new
chr3	18013654	18013774	ENSG00000274840.4|AC132807.2|lncRNA|chr3:18013654:18013774:+	0	+
#Deleted in new
chr3	18016617	18016711	ENSG00000274840.4|AC132807.2|lncRNA|chr3:18016617:18016711:+	0	+
#Deleted in new
chr3	180584347	180584677	ENSG00000239774.1|AC125618.1|lncRNA|chr3:180584347:180584677:-	0	-
#Partially deleted in new
chr3	180602505	180602550	ENSG00000163728.10|TTC14|pc|chr3:180602505:180602550:+	0	+
#Deleted in new
chr3	180617379	180617828	ENSG00000163728.10|TTC14|pc|chr3:180617379:180617828:+	0	+
#Partially deleted in new
chr3	180679607	180679799	ENSG00000145075.11|CCDC39|pc|chr3:180679607:180679799:-	0	-
#Deleted in new
chr3	180680083	180680190	ENSG00000243187.1|CCDC39-AS1|lncRNA|chr3:180680083:180680190:+	0	+
#Deleted in new
chr3	180725514	180725573	ENSG00000145075.11|CCDC39|pc|chr3:180725514:180725573:-	0	-
#Deleted in new
chr3	180737492	180737814	ENSG00000145075.11|CCDC39|pc|chr3:180737492:180737814:-	0	-
#Deleted in new
chr3	180737492	180737874	ENSG00000145075.11|CCDC39|pc|chr3:180737492:180737874:-	0	-
#Deleted in new
chr3	180751347	180751410	ENSG00000145075.11|CCDC39|pc|chr3:180751347:180751410:-	0	-
#Deleted in new
chr3	180781983	180782124	ENSG00000145075.11|CCDC39|pc|chr3:180781983:180782124:-	0	-
#Deleted in new
chr3	180810409	180810470	ENSG00000145075.11|CCDC39|pc|chr3:180810409:180810470:-	0	-
#Deleted in new
chr3	180847506	180847624	ENSG00000145075.11|CCDC39|pc|chr3:180847506:180847624:-	0	-
#Deleted in new
chr3	180868140	180868295	ENSG00000114416.17|FXR1|pc|chr3:180868140:180868295:+	0	+
#Deleted in new
chr3	180868155	180868295	ENSG00000114416.17|FXR1|pc|chr3:180868155:180868295:+	0	+
#Deleted in new
chr3	180868750	180868836	ENSG00000114416.17|FXR1|pc|chr3:180868750:180868836:+	0	+
#Deleted in new
chr3	180870046	180870178	ENSG00000145075.11|CCDC39|pc|chr3:180870046:180870178:-	0	-
#Deleted in new
chr3	180870799	180870933	ENSG00000145075.11|CCDC39|pc|chr3:180870799:180870933:-	0	-
#Deleted in new
chr3	180870799	180871005	ENSG00000145075.11|CCDC39|pc|chr3:180870799:180871005:-	0	-
#Deleted in new
chr3	180927647	180927813	ENSG00000114416.17|FXR1|pc|chr3:180927647:180927813:+	0	+
#Deleted in new
chr3	180989331	180989518	ENSG00000205981.6|DNAJC19|pc|chr3:180989331:180989518:-	0	-
#Deleted in new
chr3	180989769	180989840	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:180989769:180989840:+	0	+
#Deleted in new
chr3	180989769	180989852	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:180989769:180989852:+	0	+
#Deleted in new
chr3	180989780	180989840	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:180989780:180989840:+	0	+
#Deleted in new
chr3	180989782	180989840	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:180989782:180989840:+	0	+
#Deleted in new
chr3	181003774	181003933	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181003774:181003933:+	0	+
#Deleted in new
chr3	181030569	181030689	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181030569:181030689:+	0	+
#Deleted in new
chr3	181088876	181088917	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181088876:181088917:+	0	+
#Partially deleted in new
chr3	181359484	181359815	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181359484:181359815:+	0	+
#Deleted in new
chr3	181439976	181440034	ENSG00000241231.1|AC022294.1|lncRNA|chr3:181439976:181440034:-	0	-
#Deleted in new
chr3	181550753	181550826	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181550753:181550826:+	0	+
#Deleted in new
chr3	181550754	181550826	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181550754:181550826:+	0	+
#Deleted in new
chr3	181550772	181550826	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181550772:181550826:+	0	+
#Deleted in new
chr3	181550778	181550826	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181550778:181550826:+	0	+
#Deleted in new
chr3	181550793	181550826	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181550793:181550826:+	0	+
#Deleted in new
chr3	181582721	181582837	ENSG00000239381.6|AC125613.1|lncRNA|chr3:181582721:181582837:-	0	-
#Deleted in new
chr3	181601157	181601389	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181601157:181601389:+	0	+
#Deleted in new
chr3	181601310	181601389	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181601310:181601389:+	0	+
#Deleted in new
chr3	181616150	181616267	ENSG00000239381.6|AC125613.1|lncRNA|chr3:181616150:181616267:-	0	-
#Deleted in new
chr3	181659838	181660163	ENSG00000239381.6|AC125613.1|lncRNA|chr3:181659838:181660163:-	0	-
#Deleted in new
chr3	181671506	181671612	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181671506:181671612:+	0	+
#Deleted in new
chr3	181671506	181671741	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181671506:181671741:+	0	+
#Deleted in new
chr3	181732463	181732612	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181732463:181732612:+	0	+
#Deleted in new
chr3	181774247	181774415	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181774247:181774415:+	0	+
#Deleted in new
chr3	181774260	181774415	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181774260:181774415:+	0	+
#Deleted in new
chr3	181778534	181778604	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181778534:181778604:+	0	+
#Deleted in new
chr3	181778534	181778661	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181778534:181778661:+	0	+
#Deleted in new
chr3	181778534	181778662	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181778534:181778662:+	0	+
#Deleted in new
chr3	181778534	181778669	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181778534:181778669:+	0	+
#Deleted in new
chr3	181778534	181779013	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181778534:181779013:+	0	+
#Deleted in new
chr3	181783624	181783836	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181783624:181783836:+	0	+
#Partially deleted in new
chr3	181790672	181790932	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181790672:181790932:+	0	+
#Partially deleted in new
chr3	181790672	181790946	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181790672:181790946:+	0	+
#Deleted in new
chr3	181814212	181814303	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181814212:181814303:+	0	+
#Deleted in new
chr3	181814212	181814516	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181814212:181814516:+	0	+
#Deleted in new
chr3	181825603	181825744	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181825603:181825744:+	0	+
#Deleted in new
chr3	181825627	181825744	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181825627:181825744:+	0	+
#Deleted in new
chr3	181836456	181836638	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181836456:181836638:+	0	+
#Deleted in new
chr3	181836456	181836752	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181836456:181836752:+	0	+
#Deleted in new
chr3	181836456	181836805	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181836456:181836805:+	0	+
#Deleted in new
chr3	181836456	181836831	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181836456:181836831:+	0	+
#Deleted in new
chr3	181836456	181836879	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181836456:181836879:+	0	+
#Deleted in new
chr3	181836456	181836880	ENSG00000242808.7|SOX2-OT|lncRNA|chr3:181836456:181836880:+	0	+
#Partially deleted in new
chr3	181952377	181952923	ENSG00000242512.8|LINC01206|lncRNA|chr3:181952377:181952923:+	0	+
#Deleted in new
chr3	181952596	181952923	ENSG00000242512.8|LINC01206|lncRNA|chr3:181952596:181952923:+	0	+
#Deleted in new
chr3	181952616	181952923	ENSG00000242512.8|LINC01206|lncRNA|chr3:181952616:181952923:+	0	+
#Deleted in new
chr3	181952683	181952923	ENSG00000242512.8|LINC01206|lncRNA|chr3:181952683:181952923:+	0	+
#Deleted in new
chr3	181956802	181957294	ENSG00000242512.8|LINC01206|lncRNA|chr3:181956802:181957294:+	0	+
#Deleted in new
chr3	181957100	181957292	ENSG00000242512.8|LINC01206|lncRNA|chr3:181957100:181957292:+	0	+
#Deleted in new
chr3	181957100	181957294	ENSG00000242512.8|LINC01206|lncRNA|chr3:181957100:181957294:+	0	+
#Deleted in new
chr3	181963376	181963521	ENSG00000242512.8|LINC01206|lncRNA|chr3:181963376:181963521:+	0	+
#Deleted in new
chr3	181965982	181966014	ENSG00000242512.8|LINC01206|lncRNA|chr3:181965982:181966014:+	0	+
#Partially deleted in new
chr3	181967857	181967946	ENSG00000242512.8|LINC01206|lncRNA|chr3:181967857:181967946:+	0	+
#Partially deleted in new
chr3	181967864	181967946	ENSG00000242512.8|LINC01206|lncRNA|chr3:181967864:181967946:+	0	+
#Deleted in new
chr3	181971210	181971719	ENSG00000242512.8|LINC01206|lncRNA|chr3:181971210:181971719:+	0	+
#Deleted in new
chr3	181971213	181971734	ENSG00000242512.8|LINC01206|lncRNA|chr3:181971213:181971734:+	0	+
#Deleted in new
chr3	181971228	181971906	ENSG00000242512.8|LINC01206|lncRNA|chr3:181971228:181971906:+	0	+
#Deleted in new
chr3	181971563	181971719	ENSG00000242512.8|LINC01206|lncRNA|chr3:181971563:181971719:+	0	+
#Deleted in new
chr3	181971563	181971734	ENSG00000242512.8|LINC01206|lncRNA|chr3:181971563:181971734:+	0	+
#Deleted in new
chr3	181971563	181971906	ENSG00000242512.8|LINC01206|lncRNA|chr3:181971563:181971906:+	0	+
#Deleted in new
chr3	181971831	181971879	ENSG00000242512.8|LINC01206|lncRNA|chr3:181971831:181971879:+	0	+
#Deleted in new
chr3	181971831	181971906	ENSG00000242512.8|LINC01206|lncRNA|chr3:181971831:181971906:+	0	+
#Deleted in new
chr3	181972343	181972438	ENSG00000242512.8|LINC01206|lncRNA|chr3:181972343:181972438:+	0	+
#Deleted in new
chr3	181972343	181972469	ENSG00000242512.8|LINC01206|lncRNA|chr3:181972343:181972469:+	0	+
#Deleted in new
chr3	181972343	181972470	ENSG00000242512.8|LINC01206|lncRNA|chr3:181972343:181972470:+	0	+
#Deleted in new
chr3	181972343	181972492	ENSG00000242512.8|LINC01206|lncRNA|chr3:181972343:181972492:+	0	+
#Deleted in new
chr3	181972343	181972496	ENSG00000242512.8|LINC01206|lncRNA|chr3:181972343:181972496:+	0	+
#Deleted in new
chr3	181972343	181972497	ENSG00000242512.8|LINC01206|lncRNA|chr3:181972343:181972497:+	0	+
#Deleted in new
chr3	181972343	181972513	ENSG00000242512.8|LINC01206|lncRNA|chr3:181972343:181972513:+	0	+
#Deleted in new
chr3	181972420	181972513	ENSG00000242512.8|LINC01206|lncRNA|chr3:181972420:181972513:+	0	+
#Deleted in new
chr3	181972427	181972513	ENSG00000242512.8|LINC01206|lncRNA|chr3:181972427:181972513:+	0	+
#Deleted in new
chr3	181972444	181972513	ENSG00000242512.8|LINC01206|lncRNA|chr3:181972444:181972513:+	0	+
#Deleted in new
chr3	181973195	181973290	ENSG00000242512.8|LINC01206|lncRNA|chr3:181973195:181973290:+	0	+
#Deleted in new
chr3	181973195	181973335	ENSG00000242512.8|LINC01206|lncRNA|chr3:181973195:181973335:+	0	+
#Deleted in new
chr3	181973195	181973345	ENSG00000242512.8|LINC01206|lncRNA|chr3:181973195:181973345:+	0	+
#Partially deleted in new
chr3	182002773	182002883	ENSG00000242512.8|LINC01206|lncRNA|chr3:182002773:182002883:+	0	+
#Partially deleted in new
chr3	182002773	182003087	ENSG00000242512.8|LINC01206|lncRNA|chr3:182002773:182003087:+	0	+
#Partially deleted in new
chr3	182002773	182003091	ENSG00000242512.8|LINC01206|lncRNA|chr3:182002773:182003091:+	0	+
#Deleted in new
chr3	182446969	182448414	ENSG00000241098.1|LINC01994|lncRNA|chr3:182446969:182448414:-	0	-
#Deleted in new
chr3	182448727	182448839	ENSG00000241098.1|LINC01994|lncRNA|chr3:182448727:182448839:-	0	-
#Deleted in new
chr3	182471101	182471181	ENSG00000241098.1|LINC01994|lncRNA|chr3:182471101:182471181:-	0	-
#Partially deleted in new
chr3	182504671	182504714	ENSG00000244247.1|LINC01995|lncRNA|chr3:182504671:182504714:-	0	-
#Deleted in new
chr3	182507082	182507124	ENSG00000244247.1|LINC01995|lncRNA|chr3:182507082:182507124:-	0	-
#Deleted in new
chr3	182644817	182645024	ENSG00000238837.3|LINC02031|lncRNA|chr3:182644817:182645024:+	0	+
#Deleted in new
chr3	182649882	182650000	ENSG00000238837.3|LINC02031|lncRNA|chr3:182649882:182650000:+	0	+
#Deleted in new
chr3	182783235	182784865	ENSG00000240063.1|AC069431.1|lncRNA|chr3:182783235:182784865:-	0	-
#Partially deleted in new
chr3	182793147	182793394	ENSG00000240063.1|AC069431.1|lncRNA|chr3:182793147:182793394:-	0	-
#Partially deleted in new
chr3	182908458	182908505	ENSG00000058063.15|ATP11B|pc|chr3:182908458:182908505:+	0	+
#Deleted in new
chr3	182921239	182921938	ENSG00000273261.1|AC092953.2|lncRNA|chr3:182921239:182921938:-	0	-
#Deleted in new
chr3	182985503	182985622	ENSG00000043093.13|DCUN1D1|pc|chr3:182985503:182985622:-	0	-
#Deleted in new
chr3	183016254	183016281	ENSG00000243368.2|MCCC1-AS1|lncRNA|chr3:183016254:183016281:+	0	+
#Deleted in new
chr3	183029092	183029189	ENSG00000078070.12|MCCC1|pc|chr3:183029092:183029189:-	0	-
#Deleted in new
chr3	183090935	183091031	ENSG00000078070.12|MCCC1|pc|chr3:183090935:183091031:-	0	-
#Deleted in new
chr3	183115473	183116075	ENSG00000078070.12|MCCC1|pc|chr3:183115473:183116075:-	0	-
#Deleted in new
chr3	183158112	183158132	ENSG00000078081.7|LAMP3|pc|chr3:183158112:183158132:-	0	-
#Deleted in new
chr3	183160856	183160957	ENSG00000078081.7|LAMP3|pc|chr3:183160856:183160957:-	0	-
#Deleted in new
chr3	183160856	183160962	ENSG00000078081.7|LAMP3|pc|chr3:183160856:183160962:-	0	-
#Partially deleted in new
chr3	183162606	183162882	ENSG00000078081.7|LAMP3|pc|chr3:183162606:183162882:-	0	-
#Partially deleted in new
chr3	183162606	183162911	ENSG00000078081.7|LAMP3|pc|chr3:183162606:183162911:-	0	-
#Deleted in new
chr3	183163619	183163838	ENSG00000078081.7|LAMP3|pc|chr3:183163619:183163838:-	0	-
#Deleted in new
chr3	183163619	183163839	ENSG00000078081.7|LAMP3|pc|chr3:183163619:183163839:-	0	-
#Partially deleted in new
chr3	183178042	183179503	ENSG00000053524.12|MCF2L2|pc|chr3:183178042:183179503:-	0	-
#Deleted in new
chr3	183192648	183193096	ENSG00000053524.12|MCF2L2|pc|chr3:183192648:183193096:-	0	-
#Deleted in new
chr3	183192998	183193096	ENSG00000053524.12|MCF2L2|pc|chr3:183192998:183193096:-	0	-
#Deleted in new
chr3	183195221	183195255	ENSG00000053524.12|MCF2L2|pc|chr3:183195221:183195255:-	0	-
#Deleted in new
chr3	183205875	183205954	ENSG00000053524.12|MCF2L2|pc|chr3:183205875:183205954:-	0	-
#Deleted in new
chr3	183206121	183206214	ENSG00000053524.12|MCF2L2|pc|chr3:183206121:183206214:-	0	-
#Deleted in new
chr3	183215968	183216094	ENSG00000053524.12|MCF2L2|pc|chr3:183215968:183216094:-	0	-
#Deleted in new
chr3	183219855	183219924	ENSG00000053524.12|MCF2L2|pc|chr3:183219855:183219924:-	0	-
#Deleted in new
chr3	183223345	183223438	ENSG00000053524.12|MCF2L2|pc|chr3:183223345:183223438:-	0	-
#Partially deleted in new
chr3	183224097	183228366	ENSG00000053524.12|MCF2L2|pc|chr3:183224097:183228366:-	0	-
#Deleted in new
chr3	183228125	183228366	ENSG00000053524.12|MCF2L2|pc|chr3:183228125:183228366:-	0	-
#Deleted in new
chr3	183228296	183228366	ENSG00000053524.12|MCF2L2|pc|chr3:183228296:183228366:-	0	-
#Deleted in new
chr3	183230950	183231017	ENSG00000053524.12|MCF2L2|pc|chr3:183230950:183231017:-	0	-
#Deleted in new
chr3	183231133	183231212	ENSG00000053524.12|MCF2L2|pc|chr3:183231133:183231212:-	0	-
#Deleted in new
chr3	183265245	183265574	ENSG00000176597.11|B3GNT5|pc|chr3:183265245:183265574:+	0	+
#Deleted in new
chr3	183265301	183265523	ENSG00000176597.11|B3GNT5|pc|chr3:183265301:183265523:+	0	+
#Deleted in new
chr3	183265310	183265523	ENSG00000176597.11|B3GNT5|pc|chr3:183265310:183265523:+	0	+
#Deleted in new
chr3	183265320	183265506	ENSG00000176597.11|B3GNT5|pc|chr3:183265320:183265506:+	0	+
#Deleted in new
chr3	183265343	183265506	ENSG00000176597.11|B3GNT5|pc|chr3:183265343:183265506:+	0	+
#Deleted in new
chr3	183265965	183266124	ENSG00000176597.11|B3GNT5|pc|chr3:183265965:183266124:+	0	+
#Deleted in new
chr3	183287479	183287868	ENSG00000176597.11|B3GNT5|pc|chr3:183287479:183287868:+	0	+
#Deleted in new
chr3	183287604	183287868	ENSG00000176597.11|B3GNT5|pc|chr3:183287604:183287868:+	0	+
#Deleted in new
chr3	183289119	183289220	ENSG00000053524.12|MCF2L2|pc|chr3:183289119:183289220:-	0	-
#Deleted in new
chr3	183296145	183296311	ENSG00000176597.11|B3GNT5|pc|chr3:183296145:183296311:+	0	+
#Split in new
chr3	183296145	183298504	ENSG00000176597.11|B3GNT5|pc|chr3:183296145:183298504:+	0	+
#Deleted in new
chr3	183310515	183310655	ENSG00000053524.12|MCF2L2|pc|chr3:183310515:183310655:-	0	-
#Deleted in new
chr3	183311647	183311772	ENSG00000053524.12|MCF2L2|pc|chr3:183311647:183311772:-	0	-
#Partially deleted in new
chr3	183372018	183379411	ENSG00000053524.12|MCF2L2|pc|chr3:183372018:183379411:-	0	-
#Partially deleted in new
chr3	183487530	183492228	ENSG00000172578.11|KLHL6|pc|chr3:183487530:183492228:-	0	-
#Deleted in new
chr3	183487550	183490611	ENSG00000172578.11|KLHL6|pc|chr3:183487550:183490611:-	0	-
#Deleted in new
chr3	183520211	183521781	ENSG00000172578.11|KLHL6|pc|chr3:183520211:183521781:-	0	-
#Deleted in new
chr3	183522298	183523136	ENSG00000172578.11|KLHL6|pc|chr3:183522298:183523136:-	0	-
#Deleted in new
chr3	183548734	183548963	ENSG00000242522.1|KLHL6-AS1|lncRNA|chr3:183548734:183548963:+	0	+
#Deleted in new
chr3	183552052	183552326	ENSG00000242522.1|KLHL6-AS1|lncRNA|chr3:183552052:183552326:+	0	+
#Partially deleted in new
chr3	183642906	183643231	ENSG00000114796.15|KLHL24|pc|chr3:183642906:183643231:+	0	+
#Deleted in new
chr3	183644085	183644167	ENSG00000114796.15|KLHL24|pc|chr3:183644085:183644167:+	0	+
#Deleted in new
chr3	183664100	183664133	ENSG00000114796.15|KLHL24|pc|chr3:183664100:183664133:+	0	+
#Deleted in new
chr3	183697817	183697993	ENSG00000163872.15|YEATS2|pc|chr3:183697817:183697993:+	0	+
#Deleted in new
chr3	183793115	183793486	ENSG00000163872.15|YEATS2|pc|chr3:183793115:183793486:+	0	+
#Deleted in new
chr3	183808729	183808828	ENSG00000233885.7|YEATS2-AS1|lncRNA|chr3:183808729:183808828:-	0	-
#Partially deleted in new
chr3	183808729	183808852	ENSG00000233885.7|YEATS2-AS1|lncRNA|chr3:183808729:183808852:-	0	-
#Deleted in new
chr3	184009888	184009977	ENSG00000114770.16|ABCC5|pc|chr3:184009888:184009977:-	0	-
#Deleted in new
chr3	184010450	184010641	ENSG00000223882.1|ABCC5-AS1|lncRNA|chr3:184010450:184010641:+	0	+
#Partially deleted in new
chr3	184011265	184011419	ENSG00000223882.1|ABCC5-AS1|lncRNA|chr3:184011265:184011419:+	0	+
#Deleted in new
chr3	184031543	184031571	ENSG00000186090.10|HTR3D|pc|chr3:184031543:184031571:+	0	+
#Deleted in new
chr3	184031741	184031807	ENSG00000186090.10|HTR3D|pc|chr3:184031741:184031807:+	0	+
#Deleted in new
chr3	184032830	184033057	ENSG00000186090.10|HTR3D|pc|chr3:184032830:184033057:+	0	+
#Partially deleted in new
chr3	184035103	184035222	ENSG00000186090.10|HTR3D|pc|chr3:184035103:184035222:+	0	+
#Deleted in new
chr3	184035165	184035195	ENSG00000186090.10|HTR3D|pc|chr3:184035165:184035195:+	0	+
#Deleted in new
chr3	184035177	184035222	ENSG00000186090.10|HTR3D|pc|chr3:184035177:184035222:+	0	+
#Deleted in new
chr3	184038020	184038239	ENSG00000186090.10|HTR3D|pc|chr3:184038020:184038239:+	0	+
#Deleted in new
chr3	184038020	184038273	ENSG00000186090.10|HTR3D|pc|chr3:184038020:184038273:+	0	+
#Deleted in new
chr3	184038368	184038624	ENSG00000186090.10|HTR3D|pc|chr3:184038368:184038624:+	0	+
#Deleted in new
chr3	184038408	184038624	ENSG00000186090.10|HTR3D|pc|chr3:184038408:184038624:+	0	+
#Deleted in new
chr3	184038745	184038975	ENSG00000186090.10|HTR3D|pc|chr3:184038745:184038975:+	0	+
#Deleted in new
chr3	184038745	184039200	ENSG00000186090.10|HTR3D|pc|chr3:184038745:184039200:+	0	+
#Deleted in new
chr3	184038745	184039284	ENSG00000186090.10|HTR3D|pc|chr3:184038745:184039284:+	0	+
#Deleted in new
chr3	184038745	184039369	ENSG00000186090.10|HTR3D|pc|chr3:184038745:184039369:+	0	+
#Deleted in new
chr3	184053046	184053147	ENSG00000178084.1|HTR3C|pc|chr3:184053046:184053147:+	0	+
#Deleted in new
chr3	184054720	184054887	ENSG00000178084.1|HTR3C|pc|chr3:184054720:184054887:+	0	+
#Deleted in new
chr3	184056176	184056286	ENSG00000178084.1|HTR3C|pc|chr3:184056176:184056286:+	0	+
#Duplicated in new
chr3	184056874	184057044	ENSG00000178084.1|HTR3C|pc|chr3:184056874:184057044:+	0	+
#Deleted in new
chr3	184095117	184095350	ENSG00000238020.1|HTR3E-AS1|lncRNA|chr3:184095117:184095350:-	0	-
#Deleted in new
chr3	184097063	184097596	ENSG00000186038.9|HTR3E|pc|chr3:184097063:184097596:+	0	+
#Deleted in new
chr3	184097529	184097596	ENSG00000186038.9|HTR3E|pc|chr3:184097529:184097596:+	0	+
#Deleted in new
chr3	184100178	184100651	ENSG00000186038.9|HTR3E|pc|chr3:184100178:184100651:+	0	+
#Deleted in new
chr3	184100231	184100316	ENSG00000186038.9|HTR3E|pc|chr3:184100231:184100316:+	0	+
#Deleted in new
chr3	184100372	184100651	ENSG00000186038.9|HTR3E|pc|chr3:184100372:184100651:+	0	+
#Deleted in new
chr3	184100484	184100651	ENSG00000186038.9|HTR3E|pc|chr3:184100484:184100651:+	0	+
#Deleted in new
chr3	184101484	184101529	ENSG00000186038.9|HTR3E|pc|chr3:184101484:184101529:+	0	+
#Deleted in new
chr3	184104159	184104388	ENSG00000238020.1|HTR3E-AS1|lncRNA|chr3:184104159:184104388:-	0	-
#Deleted in new
chr3	184104181	184104291	ENSG00000186038.9|HTR3E|pc|chr3:184104181:184104291:+	0	+
#Deleted in new
chr3	184104181	184104369	ENSG00000186038.9|HTR3E|pc|chr3:184104181:184104369:+	0	+
#Deleted in new
chr3	184105125	184105178	ENSG00000238020.1|HTR3E-AS1|lncRNA|chr3:184105125:184105178:-	0	-
#Deleted in new
chr3	184105266	184105394	ENSG00000186038.9|HTR3E|pc|chr3:184105266:184105394:+	0	+
#Deleted in new
chr3	184105266	184105427	ENSG00000186038.9|HTR3E|pc|chr3:184105266:184105427:+	0	+
#Duplicated in new
chr3	184106127	184106343	ENSG00000186038.9|HTR3E|pc|chr3:184106127:184106343:+	0	+
#Deleted in new
chr3	184132941	184133561	ENSG00000273181.1|AC131235.4|lncRNA|chr3:184132941:184133561:-	0	-
#Deleted in new
chr3	184138846	184138939	ENSG00000145191.12|EIF2B5|pc|chr3:184138846:184138939:+	0	+
#Deleted in new
chr3	184188663	184188670	ENSG00000161204.11|ABCF3|pc|chr3:184188663:184188670:+	0	+
#Deleted in new
chr3	184356513	184356611	ENSG00000114859.15|CLCN2|pc|chr3:184356513:184356611:-	0	-
#Deleted in new
chr3	184401536	184401685	ENSG00000224153.2|LINC02054|lncRNA|chr3:184401536:184401685:+	0	+
#Deleted in new
chr3	184401629	184401685	ENSG00000224153.2|LINC02054|lncRNA|chr3:184401629:184401685:+	0	+
#Deleted in new
chr3	184422952	184423132	ENSG00000224153.2|LINC02054|lncRNA|chr3:184422952:184423132:+	0	+
#Deleted in new
chr3	184439243	184439648	ENSG00000224153.2|LINC02054|lncRNA|chr3:184439243:184439648:+	0	+
#Deleted in new
chr3	184505112	184505179	ENSG00000227509.1|LINC01839|lncRNA|chr3:184505112:184505179:+	0	+
#Deleted in new
chr3	184507739	184508399	ENSG00000227509.1|LINC01839|lncRNA|chr3:184507739:184508399:+	0	+
#Deleted in new
chr3	18464329	18464339	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18464329:18464339:+	0	+
#Deleted in new
chr3	18465293	18465358	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18465293:18465358:+	0	+
#Deleted in new
chr3	18465962	18466004	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18465962:18466004:+	0	+
#Deleted in new
chr3	18465962	18466039	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18465962:18466039:+	0	+
#Deleted in new
chr3	18465982	18466039	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18465982:18466039:+	0	+
#Deleted in new
chr3	18465985	18466039	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18465985:18466039:+	0	+
#Deleted in new
chr3	18465986	18466039	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18465986:18466039:+	0	+
#Deleted in new
chr3	18465991	18466039	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18465991:18466039:+	0	+
#Deleted in new
chr3	18465993	18466039	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18465993:18466039:+	0	+
#Deleted in new
chr3	18466000	18466039	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18466000:18466039:+	0	+
#Deleted in new
chr3	18466012	18466039	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18466012:18466039:+	0	+
#Deleted in new
chr3	18466022	18466039	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18466022:18466039:+	0	+
#Partially deleted in new
chr3	18468985	18469702	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18468985:18469702:+	0	+
#Deleted in new
chr3	18473711	18473858	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18473711:18473858:+	0	+
#Deleted in new
chr3	184737551	184737771	ENSG00000272970.1|AC107294.2|lncRNA|chr3:184737551:184737771:+	0	+
#Partially deleted in new
chr3	18476438	18476785	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18476438:18476785:+	0	+
#Partially deleted in new
chr3	184812508	184812789	ENSG00000156931.15|VPS8|pc|chr3:184812508:184812789:+	0	+
#Partially deleted in new
chr3	184812515	184812789	ENSG00000156931.15|VPS8|pc|chr3:184812515:184812789:+	0	+
#Deleted in new
chr3	184815783	184815820	ENSG00000156931.15|VPS8|pc|chr3:184815783:184815820:+	0	+
#Deleted in new
chr3	184815783	184816230	ENSG00000156931.15|VPS8|pc|chr3:184815783:184816230:+	0	+
#Partially deleted in new
chr3	184824930	184825048	ENSG00000156931.15|VPS8|pc|chr3:184824930:184825048:+	0	+
#Deleted in new
chr3	184882348	184882433	ENSG00000156931.15|VPS8|pc|chr3:184882348:184882433:+	0	+
#Deleted in new
chr3	184893233	184893412	ENSG00000156931.15|VPS8|pc|chr3:184893233:184893412:+	0	+
#Partially deleted in new
chr3	184900920	184901363	ENSG00000156931.15|VPS8|pc|chr3:184900920:184901363:+	0	+
#Deleted in new
chr3	18516044	18516178	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18516044:18516178:+	0	+
#Partially deleted in new
chr3	185162870	185163166	ENSG00000223358.5|EHHADH-AS1|lncRNA|chr3:185162870:185163166:+	0	+
#Deleted in new
chr3	185177315	185177438	ENSG00000223358.5|EHHADH-AS1|lncRNA|chr3:185177315:185177438:+	0	+
#Deleted in new
chr3	185177319	185177438	ENSG00000223358.5|EHHADH-AS1|lncRNA|chr3:185177319:185177438:+	0	+
#Deleted in new
chr3	185179939	185180009	ENSG00000223358.5|EHHADH-AS1|lncRNA|chr3:185179939:185180009:+	0	+
#Deleted in new
chr3	185180502	185180583	ENSG00000223358.5|EHHADH-AS1|lncRNA|chr3:185180502:185180583:+	0	+
#Deleted in new
chr3	185180502	185180716	ENSG00000223358.5|EHHADH-AS1|lncRNA|chr3:185180502:185180716:+	0	+
#Deleted in new
chr3	185181135	185181686	ENSG00000223358.5|EHHADH-AS1|lncRNA|chr3:185181135:185181686:+	0	+
#Deleted in new
chr3	185182831	185182940	ENSG00000223358.5|EHHADH-AS1|lncRNA|chr3:185182831:185182940:+	0	+
#Deleted in new
chr3	185191686	185191955	ENSG00000223358.5|EHHADH-AS1|lncRNA|chr3:185191686:185191955:+	0	+
#Deleted in new
chr3	185226827	185226858	ENSG00000113790.10|EHHADH|pc|chr3:185226827:185226858:-	0	-
#Deleted in new
chr3	18525790	18526540	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18525790:18526540:+	0	+
#Deleted in new
chr3	18526386	18526508	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18526386:18526508:+	0	+
#Deleted in new
chr3	18526386	18526540	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18526386:18526540:+	0	+
#Deleted in new
chr3	18526393	18526540	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18526393:18526540:+	0	+
#Deleted in new
chr3	18526395	18526540	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18526395:18526540:+	0	+
#Deleted in new
chr3	18526425	18526540	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18526425:18526540:+	0	+
#Deleted in new
chr3	18526440	18526540	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18526440:18526540:+	0	+
#Deleted in new
chr3	18526498	18526540	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18526498:18526540:+	0	+
#Deleted in new
chr3	18526509	18526540	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18526509:18526540:+	0	+
#Deleted in new
chr3	18526525	18526540	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18526525:18526540:+	0	+
#Deleted in new
chr3	185280178	185280324	ENSG00000113790.10|EHHADH|pc|chr3:185280178:185280324:-	0	-
#Deleted in new
chr3	185281909	185281990	ENSG00000113790.10|EHHADH|pc|chr3:185281909:185281990:-	0	-
#Deleted in new
chr3	185282940	185283027	ENSG00000073803.13|MAP3K13|pc|chr3:185282940:185283027:+	0	+
#Deleted in new
chr3	185282952	185283027	ENSG00000073803.13|MAP3K13|pc|chr3:185282952:185283027:+	0	+
#Deleted in new
chr3	185282960	185283027	ENSG00000073803.13|MAP3K13|pc|chr3:185282960:185283027:+	0	+
#Deleted in new
chr3	185282976	185283027	ENSG00000073803.13|MAP3K13|pc|chr3:185282976:185283027:+	0	+
#Deleted in new
chr3	185283025	185283119	ENSG00000073803.13|MAP3K13|pc|chr3:185283025:185283119:+	0	+
#Partially deleted in new
chr3	185291612	185293079	ENSG00000073803.13|MAP3K13|pc|chr3:185291612:185293079:+	0	+
#Deleted in new
chr3	18529980	18530049	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530049:+	0	+
#Deleted in new
chr3	18529980	18530132	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530132:+	0	+
#Deleted in new
chr3	18529980	18530172	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530172:+	0	+
#Deleted in new
chr3	18529980	18530185	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530185:+	0	+
#Deleted in new
chr3	18529980	18530234	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530234:+	0	+
#Deleted in new
chr3	18529980	18530249	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530249:+	0	+
#Deleted in new
chr3	18529980	18530317	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530317:+	0	+
#Deleted in new
chr3	18529980	18530326	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530326:+	0	+
#Deleted in new
chr3	18529980	18530351	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530351:+	0	+
#Deleted in new
chr3	18529980	18530370	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530370:+	0	+
#Deleted in new
chr3	18529980	18530394	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530394:+	0	+
#Deleted in new
chr3	18529980	18530447	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530447:+	0	+
#Deleted in new
chr3	18529980	18530546	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530546:+	0	+
#Deleted in new
chr3	18529980	18530727	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529980:18530727:+	0	+
#Deleted in new
chr3	18529983	18530185	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18529983:18530185:+	0	+
#Deleted in new
chr3	18530938	18531039	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18530938:18531039:+	0	+
#Deleted in new
chr3	185481217	185481311	ENSG00000163900.10|TMEM41A|pc|chr3:185481217:185481311:-	0	-
#Partially deleted in new
chr3	185489922	185490027	ENSG00000163900.10|TMEM41A|pc|chr3:185489922:185490027:-	0	-
#Deleted in new
chr3	185498401	185498722	ENSG00000163900.10|TMEM41A|pc|chr3:185498401:185498722:-	0	-
#Deleted in new
chr3	185546876	185546972	ENSG00000163898.9|LIPH|pc|chr3:185546876:185546972:-	0	-
#Deleted in new
chr3	18555390	18555725	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18555390:18555725:+	0	+
#Deleted in new
chr3	185582495	185582817	ENSG00000163904.12|SENP2|pc|chr3:185582495:185582817:+	0	+
#Deleted in new
chr3	185582783	185582863	ENSG00000163904.12|SENP2|pc|chr3:185582783:185582863:+	0	+
#Deleted in new
chr3	185712527	185712662	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185712527:185712662:+	0	+
#Deleted in new
chr3	185713251	185713488	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185713251:185713488:+	0	+
#Deleted in new
chr3	185713291	185713488	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185713291:185713488:+	0	+
#Deleted in new
chr3	185716440	185716584	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185716440:185716584:+	0	+
#Deleted in new
chr3	185716440	185716892	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185716440:185716892:+	0	+
#Deleted in new
chr3	185716440	185718167	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185716440:185718167:+	0	+
#Deleted in new
chr3	185722118	185722533	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185722118:185722533:+	0	+
#Deleted in new
chr3	185722463	185722533	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185722463:185722533:+	0	+
#Deleted in new
chr3	185724432	185724604	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185724432:185724604:+	0	+
#Deleted in new
chr3	185724866	185725074	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185724866:185725074:+	0	+
#Deleted in new
chr3	185724937	185725074	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185724937:185725074:+	0	+
#Deleted in new
chr3	185728243	185728336	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185728243:185728336:+	0	+
#Deleted in new
chr3	185729672	185729787	ENSG00000163915.7|IGF2BP2-AS1|lncRNA|chr3:185729672:185729787:+	0	+
#Partially deleted in new
chr3	185922010	185923809	ENSG00000136527.17|TRA2B|pc|chr3:185922010:185923809:-	0	-
#Partially deleted in new
chr3	185923795	185925264	ENSG00000136527.17|TRA2B|pc|chr3:185923795:185925264:-	0	-
#Deleted in new
chr3	185936237	185936600	ENSG00000136527.17|TRA2B|pc|chr3:185936237:185936600:-	0	-
#Deleted in new
chr3	18606998	18607068	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18606998:18607068:+	0	+
#Deleted in new
chr3	18606998	18607130	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18606998:18607130:+	0	+
#Deleted in new
chr3	18606998	18607137	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18606998:18607137:+	0	+
#Deleted in new
chr3	18606998	18607176	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18606998:18607176:+	0	+
#Deleted in new
chr3	18606998	18607178	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18606998:18607178:+	0	+
#Deleted in new
chr3	18606998	18607179	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18606998:18607179:+	0	+
#Deleted in new
chr3	18606998	18607184	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18606998:18607184:+	0	+
#Deleted in new
chr3	18606998	18607186	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18606998:18607186:+	0	+
#Deleted in new
chr3	18606998	18607187	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18606998:18607187:+	0	+
#Deleted in new
chr3	186079031	186079105	ENSG00000244405.7|ETV5|pc|chr3:186079031:186079105:-	0	-
#Partially deleted in new
chr3	186108827	186108929	ENSG00000244405.7|ETV5|pc|chr3:186108827:186108929:-	0	-
#Partially deleted in new
chr3	186158182	186161663	ENSG00000058866.14|DGKG|pc|chr3:186158182:186161663:-	0	-
#Deleted in new
chr3	186440344	186440409	ENSG00000234548.5|LINC02020|lncRNA|chr3:186440344:186440409:+	0	+
#Deleted in new
chr3	186440379	186440448	ENSG00000234548.5|LINC02020|lncRNA|chr3:186440379:186440448:+	0	+
#Deleted in new
chr3	186440403	186440448	ENSG00000234548.5|LINC02020|lncRNA|chr3:186440403:186440448:+	0	+
#Deleted in new
chr3	186440981	186441121	ENSG00000234548.5|LINC02020|lncRNA|chr3:186440981:186441121:+	0	+
#Deleted in new
chr3	186440981	186441179	ENSG00000234548.5|LINC02020|lncRNA|chr3:186440981:186441179:+	0	+
#Deleted in new
chr3	186440987	186441121	ENSG00000234548.5|LINC02020|lncRNA|chr3:186440987:186441121:+	0	+
#Deleted in new
chr3	186441844	186442081	ENSG00000234548.5|LINC02020|lncRNA|chr3:186441844:186442081:+	0	+
#Deleted in new
chr3	186444905	186445058	ENSG00000234548.5|LINC02020|lncRNA|chr3:186444905:186445058:+	0	+
#Deleted in new
chr3	186444905	186445191	ENSG00000234548.5|LINC02020|lncRNA|chr3:186444905:186445191:+	0	+
#Deleted in new
chr3	186444905	186445242	ENSG00000234548.5|LINC02020|lncRNA|chr3:186444905:186445242:+	0	+
#Deleted in new
chr3	186450407	186450696	ENSG00000234548.5|LINC02020|lncRNA|chr3:186450407:186450696:+	0	+
#Partially deleted in new
chr3	186455435	186455773	ENSG00000224406.5|LINC02052|lncRNA|chr3:186455435:186455773:-	0	-
#Deleted in new
chr3	186455647	186455773	ENSG00000224406.5|LINC02052|lncRNA|chr3:186455647:186455773:-	0	-
#Deleted in new
chr3	186455721	186455773	ENSG00000224406.5|LINC02052|lncRNA|chr3:186455721:186455773:-	0	-
#Deleted in new
chr3	186455987	186456036	ENSG00000224406.5|LINC02052|lncRNA|chr3:186455987:186456036:-	0	-
#Deleted in new
chr3	186455987	186456045	ENSG00000224406.5|LINC02052|lncRNA|chr3:186455987:186456045:-	0	-
#Deleted in new
chr3	186456163	186456604	ENSG00000224406.5|LINC02052|lncRNA|chr3:186456163:186456604:-	0	-
#Deleted in new
chr3	186456396	186456546	ENSG00000224406.5|LINC02052|lncRNA|chr3:186456396:186456546:-	0	-
#Deleted in new
chr3	186476726	186477130	ENSG00000226859.1|LINC02051|lncRNA|chr3:186476726:186477130:+	0	+
#Deleted in new
chr3	186478084	186478370	ENSG00000226859.1|LINC02051|lncRNA|chr3:186478084:186478370:+	0	+
#Deleted in new
chr3	186478162	186478401	ENSG00000224406.5|LINC02052|lncRNA|chr3:186478162:186478401:-	0	-
#Partially deleted in new
chr3	186492111	186492290	ENSG00000224406.5|LINC02052|lncRNA|chr3:186492111:186492290:-	0	-
#Partially deleted in new
chr3	186546391	186546702	ENSG00000213139.7|CRYGS|pc|chr3:186546391:186546702:-	0	-
#Partially deleted in new
chr3	186578297	186581513	ENSG00000090520.11|DNAJB11|pc|chr3:186578297:186581513:+	0	+
#Deleted in new
chr3	186579475	186579966	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186579475:186579966:-	0	-
#Deleted in new
chr3	186579830	186579971	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186579830:186579971:-	0	-
#Deleted in new
chr3	186635968	186636228	ENSG00000090512.11|FETUB|pc|chr3:186635968:186636228:+	0	+
#Deleted in new
chr3	186647112	186647162	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186647112:186647162:-	0	-
#Deleted in new
chr3	186647118	186647162	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186647118:186647162:-	0	-
#Deleted in new
chr3	186660215	186660567	ENSG00000113905.4|HRG|pc|chr3:186660215:186660567:+	0	+
#Deleted in new
chr3	186665091	186665213	ENSG00000113905.4|HRG|pc|chr3:186665091:186665213:+	0	+
#Deleted in new
chr3	186666930	186667261	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186666930:186667261:-	0	-
#Deleted in new
chr3	186666966	186667261	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186666966:186667261:-	0	-
#Deleted in new
chr3	186666967	186667261	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186666967:186667261:-	0	-
#Deleted in new
chr3	186668640	186668812	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186668640:186668812:-	0	-
#Partially deleted in new
chr3	186668642	186668912	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186668642:186668912:-	0	-
#Deleted in new
chr3	186695841	186695973	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186695841:186695973:-	0	-
#Deleted in new
chr3	186695841	186695982	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186695841:186695982:-	0	-
#Deleted in new
chr3	186703733	186703856	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186703733:186703856:-	0	-
#Deleted in new
chr3	186710517	186710567	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186710517:186710567:-	0	-
#Deleted in new
chr3	186711167	186711333	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186711167:186711333:-	0	-
#Deleted in new
chr3	186714042	186714139	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186714042:186714139:-	0	-
#Deleted in new
chr3	186714355	186714539	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186714355:186714539:-	0	-
#Deleted in new
chr3	186714447	186714539	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186714447:186714539:-	0	-
#Partially deleted in new
chr3	186714739	186714949	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186714739:186714949:-	0	-
#Partially deleted in new
chr3	186717697	186718569	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186717697:186718569:-	0	-
#Partially deleted in new
chr3	186718466	186718504	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186718466:186718504:-	0	-
#Partially deleted in new
chr3	186721742	186722089	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186721742:186722089:-	0	-
#Deleted in new
chr3	186728350	186728732	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186728350:186728732:-	0	-
#Deleted in new
chr3	186728354	186729005	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186728354:186729005:-	0	-
#Deleted in new
chr3	186728566	186729005	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186728566:186729005:-	0	-
#Deleted in new
chr3	186728677	186729005	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186728677:186729005:-	0	-
#Deleted in new
chr3	186734629	186734834	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186734629:186734834:-	0	-
#Deleted in new
chr3	186734712	186734834	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186734712:186734834:-	0	-
#Deleted in new
chr3	186735848	186736650	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186735848:186736650:-	0	-
#Deleted in new
chr3	186736239	186736650	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186736239:186736650:-	0	-
#Deleted in new
chr3	186736415	186736650	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186736415:186736650:-	0	-
#Deleted in new
chr3	186736506	186736650	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186736506:186736650:-	0	-
#Deleted in new
chr3	186736538	186736650	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186736538:186736650:-	0	-
#Deleted in new
chr3	186736746	186736883	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186736746:186736883:-	0	-
#Deleted in new
chr3	186744597	186744866	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186744597:186744866:-	0	-
#Deleted in new
chr3	186745109	186745202	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186745109:186745202:-	0	-
#Deleted in new
chr3	186745614	186745835	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186745614:186745835:-	0	-
#Deleted in new
chr3	186745729	186745849	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186745729:186745849:-	0	-
#Deleted in new
chr3	186746076	186746130	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186746076:186746130:-	0	-
#Deleted in new
chr3	186746698	186746795	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186746698:186746795:-	0	-
#Deleted in new
chr3	186746698	186746820	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186746698:186746820:-	0	-
#Deleted in new
chr3	186753324	186753464	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186753324:186753464:-	0	-
#Deleted in new
chr3	186753324	186753755	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186753324:186753755:-	0	-
#Deleted in new
chr3	186757016	186757218	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186757016:186757218:-	0	-
#Deleted in new
chr3	186757016	186757519	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186757016:186757519:-	0	-
#Deleted in new
chr3	186757016	186757727	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186757016:186757727:-	0	-
#Deleted in new
chr3	186757024	186757422	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186757024:186757422:-	0	-
#Deleted in new
chr3	186757608	186757668	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186757608:186757668:-	0	-
#Deleted in new
chr3	186758754	186759268	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186758754:186759268:-	0	-
#Deleted in new
chr3	186760351	186760464	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186760351:186760464:-	0	-
#Deleted in new
chr3	186760351	186760541	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186760351:186760541:-	0	-
#Deleted in new
chr3	186760351	186760558	ENSG00000197099.8|AC068631.1|lncRNA|chr3:186760351:186760558:-	0	-
#Partially deleted in new
chr3	186791322	186791850	ENSG00000163918.10|RFC4|pc|chr3:186791322:186791850:-	0	-
#Deleted in new
chr3	186805559	186805598	ENSG00000163918.10|RFC4|pc|chr3:186805559:186805598:-	0	-
#Deleted in new
chr3	186806289	186806355	ENSG00000163918.10|RFC4|pc|chr3:186806289:186806355:-	0	-
#Deleted in new
chr3	186806289	186806396	ENSG00000163918.10|RFC4|pc|chr3:186806289:186806396:-	0	-
#Deleted in new
chr3	186806747	186807058	ENSG00000163918.10|RFC4|pc|chr3:186806747:186807058:-	0	-
#Deleted in new
chr3	186807691	186807886	ENSG00000231724.1|AC112907.1|lncRNA|chr3:186807691:186807886:+	0	+
#Deleted in new
chr3	186810879	186812148	ENSG00000232233.1|LINC02043|lncRNA|chr3:186810879:186812148:-	0	-
#Deleted in new
chr3	186823544	186823621	ENSG00000232233.1|LINC02043|lncRNA|chr3:186823544:186823621:-	0	-
#Deleted in new
chr3	186845556	186845607	ENSG00000181092.9|ADIPOQ|pc|chr3:186845556:186845607:+	0	+
#Deleted in new
chr3	18693886	18693953	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18693886:18693953:+	0	+
#Deleted in new
chr3	18695567	18695628	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18695567:18695628:+	0	+
#Deleted in new
chr3	18697899	18697975	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18697899:18697975:+	0	+
#Partially deleted in new
chr3	186996621	186996673	ENSG00000073849.14|ST6GAL1|pc|chr3:186996621:186996673:+	0	+
#Deleted in new
chr3	187021854	187022004	ENSG00000073849.14|ST6GAL1|pc|chr3:187021854:187022004:+	0	+
#Deleted in new
chr3	187021855	187022004	ENSG00000073849.14|ST6GAL1|pc|chr3:187021855:187022004:+	0	+
#Deleted in new
chr3	187024687	187024858	ENSG00000073849.14|ST6GAL1|pc|chr3:187024687:187024858:+	0	+
#Deleted in new
chr3	187064519	187064616	ENSG00000073849.14|ST6GAL1|pc|chr3:187064519:187064616:+	0	+
#Deleted in new
chr3	187127998	187128062	ENSG00000163923.9|RPL39L|pc|chr3:187127998:187128062:-	0	-
#Deleted in new
chr3	187139212	187139484	ENSG00000163923.9|RPL39L|pc|chr3:187139212:187139484:-	0	-
#Deleted in new
chr3	187139212	187139523	ENSG00000163923.9|RPL39L|pc|chr3:187139212:187139523:-	0	-
#Deleted in new
chr3	187180664	187180908	ENSG00000163923.9|RPL39L|pc|chr3:187180664:187180908:-	0	-
#Deleted in new
chr3	187203519	187203846	ENSG00000198491.3|AC007920.1|lncRNA|chr3:187203519:187203846:-	0	-
#Deleted in new
chr3	187207285	187207629	ENSG00000198491.3|AC007920.1|lncRNA|chr3:187207285:187207629:-	0	-
#Deleted in new
chr3	187226226	187226295	ENSG00000127241.16|MASP1|pc|chr3:187226226:187226295:-	0	-
#Deleted in new
chr3	187296225	187297933	ENSG00000283175.1|AC007920.2|lncRNA|chr3:187296225:187297933:+	0	+
#Deleted in new
chr3	187448844	187448890	ENSG00000228952.1|LINC02041|lncRNA|chr3:187448844:187448890:+	0	+
#Deleted in new
chr3	187449250	187449450	ENSG00000228952.1|LINC02041|lncRNA|chr3:187449250:187449450:+	0	+
#Deleted in new
chr3	18746980	18747491	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18746980:18747491:+	0	+
#Partially deleted in new
chr3	187946137	187946221	ENSG00000236864.1|AC068295.1|lncRNA|chr3:187946137:187946221:-	0	-
#Partially deleted in new
chr3	188146565	188147020	ENSG00000234238.1|AC022498.1|lncRNA|chr3:188146565:188147020:+	0	+
#Deleted in new
chr3	188312834	188312918	ENSG00000145012.13|LPP|pc|chr3:188312834:188312918:+	0	+
#Deleted in new
chr3	18843135	18843176	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18843135:18843176:+	0	+
#Deleted in new
chr3	18846850	18846953	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18846850:18846953:+	0	+
#Deleted in new
chr3	189000773	189000911	ENSG00000188001.9|TPRG1|pc|chr3:189000773:189000911:+	0	+
#Deleted in new
chr3	189004542	189004760	ENSG00000188001.9|TPRG1|pc|chr3:189004542:189004760:+	0	+
#Deleted in new
chr3	189023749	189023814	ENSG00000188001.9|TPRG1|pc|chr3:189023749:189023814:+	0	+
#Deleted in new
chr3	189023749	189023946	ENSG00000188001.9|TPRG1|pc|chr3:189023749:189023946:+	0	+
#Deleted in new
chr3	189120246	189120387	ENSG00000188001.9|TPRG1|pc|chr3:189120246:189120387:+	0	+
#Partially deleted in new
chr3	189121285	189121371	ENSG00000188001.9|TPRG1|pc|chr3:189121285:189121371:+	0	+
#Deleted in new
chr3	189147583	189147647	ENSG00000188001.9|TPRG1|pc|chr3:189147583:189147647:+	0	+
#Deleted in new
chr3	18920162	18920401	ENSG00000228956.8|SATB1-AS1|lncRNA|chr3:18920162:18920401:+	0	+
#Deleted in new
chr3	189217876	189218003	ENSG00000188001.9|TPRG1|pc|chr3:189217876:189218003:+	0	+
#Deleted in new
chr3	189240496	189240594	ENSG00000230115.1|TPRG1-AS2|lncRNA|chr3:189240496:189240594:-	0	-
#Deleted in new
chr3	190143285	190143501	ENSG00000225764.1|P3H2-AS1|lncRNA|chr3:190143285:190143501:+	0	+
#Deleted in new
chr3	190144605	190144846	ENSG00000225764.1|P3H2-AS1|lncRNA|chr3:190144605:190144846:+	0	+
#Deleted in new
chr3	190370892	190371001	ENSG00000113946.3|CLDN16|pc|chr3:190370892:190371001:+	0	+
#Partially deleted in new
chr3	190518508	190519030	ENSG00000196083.9|IL1RAP|pc|chr3:190518508:190519030:+	0	+
#Deleted in new
chr3	190550341	190550505	ENSG00000196083.9|IL1RAP|pc|chr3:190550341:190550505:+	0	+
#Deleted in new
chr3	190555863	190556216	ENSG00000196083.9|IL1RAP|pc|chr3:190555863:190556216:+	0	+
#Deleted in new
chr3	190556129	190556216	ENSG00000196083.9|IL1RAP|pc|chr3:190556129:190556216:+	0	+
#Deleted in new
chr3	190697922	190698150	ENSG00000228730.1|LINC02013|lncRNA|chr3:190697922:190698150:-	0	-
#Deleted in new
chr3	191217069	191217179	ENSG00000233308.1|OSTN-AS1|lncRNA|chr3:191217069:191217179:-	0	-
#Partially deleted in new
chr3	191229765	191229897	ENSG00000233308.1|OSTN-AS1|lncRNA|chr3:191229765:191229897:-	0	-
#Deleted in new
chr3	191234571	191234605	ENSG00000233308.1|OSTN-AS1|lncRNA|chr3:191234571:191234605:-	0	-
#Split in new
chr3	191262865	191265615	ENSG00000188729.6|OSTN|pc|chr3:191262865:191265615:+	0	+
#Partially deleted in new
chr3	191267167	191268441	ENSG00000188958.9|UTS2B|pc|chr3:191267167:191268441:-	0	-
#Partially deleted in new
chr3	191268040	191268441	ENSG00000188958.9|UTS2B|pc|chr3:191268040:191268441:-	0	-
#Deleted in new
chr3	191294559	191294726	ENSG00000188958.9|UTS2B|pc|chr3:191294559:191294726:-	0	-
#Deleted in new
chr3	191304491	191304548	ENSG00000188958.9|UTS2B|pc|chr3:191304491:191304548:-	0	-
#Deleted in new
chr3	191316035	191316218	ENSG00000188958.9|UTS2B|pc|chr3:191316035:191316218:-	0	-
#Deleted in new
chr3	191316035	191316439	ENSG00000188958.9|UTS2B|pc|chr3:191316035:191316439:-	0	-
#Deleted in new
chr3	191425525	191425604	ENSG00000223812.6|AC073365.1|lncRNA|chr3:191425525:191425604:+	0	+
#Deleted in new
chr3	191425526	191425604	ENSG00000223812.6|AC073365.1|lncRNA|chr3:191425526:191425604:+	0	+
#Deleted in new
chr3	191425527	191425604	ENSG00000223812.6|AC073365.1|lncRNA|chr3:191425527:191425604:+	0	+
#Deleted in new
chr3	191546050	191546115	ENSG00000223812.6|AC073365.1|lncRNA|chr3:191546050:191546115:+	0	+
#Deleted in new
chr3	191557261	191557384	ENSG00000223812.6|AC073365.1|lncRNA|chr3:191557261:191557384:+	0	+
#Deleted in new
chr3	191557323	191557384	ENSG00000223812.6|AC073365.1|lncRNA|chr3:191557323:191557384:+	0	+
#Deleted in new
chr3	191569599	191569824	ENSG00000223812.6|AC073365.1|lncRNA|chr3:191569599:191569824:+	0	+
#Deleted in new
chr3	191573313	191573474	ENSG00000223812.6|AC073365.1|lncRNA|chr3:191573313:191573474:+	0	+
#Deleted in new
chr3	191573313	191573509	ENSG00000223812.6|AC073365.1|lncRNA|chr3:191573313:191573509:+	0	+
#Deleted in new
chr3	191585327	191585362	ENSG00000223812.6|AC073365.1|lncRNA|chr3:191585327:191585362:+	0	+
#Deleted in new
chr3	191589902	191590356	ENSG00000223812.6|AC073365.1|lncRNA|chr3:191589902:191590356:+	0	+
#Deleted in new
chr3	192029879	192029906	ENSG00000232353.5|AC026320.1|lncRNA|chr3:192029879:192029906:+	0	+
#Deleted in new
chr3	192029879	192030039	ENSG00000232353.5|AC026320.1|lncRNA|chr3:192029879:192030039:+	0	+
#Deleted in new
chr3	192036017	192036242	ENSG00000232353.5|AC026320.1|lncRNA|chr3:192036017:192036242:+	0	+
#Deleted in new
chr3	192036017	192036389	ENSG00000232353.5|AC026320.1|lncRNA|chr3:192036017:192036389:+	0	+
#Partially deleted in new
chr3	192036017	192036557	ENSG00000232353.5|AC026320.1|lncRNA|chr3:192036017:192036557:+	0	+
#Deleted in new
chr3	192238036	192238321	ENSG00000231383.2|FGF12-AS1|lncRNA|chr3:192238036:192238321:+	0	+
#Deleted in new
chr3	192244814	192244987	ENSG00000231383.2|FGF12-AS1|lncRNA|chr3:192244814:192244987:+	0	+
#Deleted in new
chr3	192267002	192267139	ENSG00000231383.2|FGF12-AS1|lncRNA|chr3:192267002:192267139:+	0	+
#Deleted in new
chr3	192268650	192268749	ENSG00000114279.13|FGF12|pc|chr3:192268650:192268749:-	0	-
#Deleted in new
chr3	192282796	192282914	ENSG00000231383.2|FGF12-AS1|lncRNA|chr3:192282796:192282914:+	0	+
#Deleted in new
chr3	192282997	192283097	ENSG00000231383.2|FGF12-AS1|lncRNA|chr3:192282997:192283097:+	0	+
#Deleted in new
chr3	192521288	192521398	ENSG00000226709.1|FGF12-AS3|lncRNA|chr3:192521288:192521398:+	0	+
#Partially deleted in new
chr3	192672965	192673270	ENSG00000114279.13|FGF12|pc|chr3:192672965:192673270:-	0	-
#Deleted in new
chr3	192767703	192767764	ENSG00000114279.13|FGF12|pc|chr3:192767703:192767764:-	0	-
#Deleted in new
chr3	193372219	193372285	ENSG00000187527.10|ATP13A5|pc|chr3:193372219:193372285:-	0	-
#Deleted in new
chr3	193404023	193404166	ENSG00000127249.14|ATP13A4|pc|chr3:193404023:193404166:-	0	-
#Deleted in new
chr3	193416992	193417077	ENSG00000127249.14|ATP13A4|pc|chr3:193416992:193417077:-	0	-
#Deleted in new
chr3	193418934	193418983	ENSG00000127249.14|ATP13A4|pc|chr3:193418934:193418983:-	0	-
#Partially deleted in new
chr3	193667370	193667455	ENSG00000198836.8|OPA1|pc|chr3:193667370:193667455:+	0	+
#Partially deleted in new
chr3	194001856	194002576	ENSG00000214146.2|LINC02026|lncRNA|chr3:194001856:194002576:-	0	-
#Deleted in new
chr3	194057636	194057679	ENSG00000230102.7|LINC02028|lncRNA|chr3:194057636:194057679:-	0	-
#Deleted in new
chr3	194061265	194061461	ENSG00000230102.7|LINC02028|lncRNA|chr3:194061265:194061461:-	0	-
#Deleted in new
chr3	194069315	194069415	ENSG00000230102.7|LINC02028|lncRNA|chr3:194069315:194069415:-	0	-
#Deleted in new
chr3	194069315	194069529	ENSG00000230102.7|LINC02028|lncRNA|chr3:194069315:194069529:-	0	-
#Deleted in new
chr3	194078211	194078265	ENSG00000276407.4|AC024559.2|lncRNA|chr3:194078211:194078265:+	0	+
#Deleted in new
chr3	194078211	194078294	ENSG00000276407.4|AC024559.2|lncRNA|chr3:194078211:194078294:+	0	+
#Deleted in new
chr3	194078400	194078468	ENSG00000276407.4|AC024559.2|lncRNA|chr3:194078400:194078468:+	0	+
#Deleted in new
chr3	194247647	194247821	ENSG00000238097.1|LINC02037|lncRNA|chr3:194247647:194247821:+	0	+
#Partially deleted in new
chr3	194276681	194276820	ENSG00000228271.1|LINC02048|lncRNA|chr3:194276681:194276820:+	0	+
#Partially deleted in new
chr3	194299634	194300517	ENSG00000214145.6|LINC00887|lncRNA|chr3:194299634:194300517:-	0	-
#Deleted in new
chr3	194301198	194303465	ENSG00000214145.6|LINC00887|lncRNA|chr3:194301198:194303465:-	0	-
#Deleted in new
chr3	194301445	194301586	ENSG00000214145.6|LINC00887|lncRNA|chr3:194301445:194301586:-	0	-
#Deleted in new
chr3	194301475	194301586	ENSG00000214145.6|LINC00887|lncRNA|chr3:194301475:194301586:-	0	-
#Deleted in new
chr3	194301553	194301591	ENSG00000214145.6|LINC00887|lncRNA|chr3:194301553:194301591:-	0	-
#Deleted in new
chr3	194303358	194303465	ENSG00000214145.6|LINC00887|lncRNA|chr3:194303358:194303465:-	0	-
#Deleted in new
chr3	194303595	194303737	ENSG00000214145.6|LINC00887|lncRNA|chr3:194303595:194303737:-	0	-
#Partially deleted in new
chr3	194305756	194306027	ENSG00000214145.6|LINC00887|lncRNA|chr3:194305756:194306027:-	0	-
#Partially deleted in new
chr3	194305756	194306031	ENSG00000214145.6|LINC00887|lncRNA|chr3:194305756:194306031:-	0	-
#Deleted in new
chr3	194312600	194312704	ENSG00000214145.6|LINC00887|lncRNA|chr3:194312600:194312704:-	0	-
#Deleted in new
chr3	194312600	194312800	ENSG00000214145.6|LINC00887|lncRNA|chr3:194312600:194312800:-	0	-
#Deleted in new
chr3	194312600	194312803	ENSG00000214145.6|LINC00887|lncRNA|chr3:194312600:194312803:-	0	-
#Partially deleted in new
chr3	194363355	194363412	ENSG00000172061.8|LRRC15|pc|chr3:194363355:194363412:-	0	-
#Deleted in new
chr3	194494049	194494280	ENSG00000133657.14|ATP13A3|pc|chr3:194494049:194494280:-	0	-
#Deleted in new
chr3	194501261	194501503	ENSG00000244675.2|AC108676.1|lncRNA|chr3:194501261:194501503:-	0	-
#Partially deleted in new
chr3	194510405	194510647	ENSG00000233058.1|LINC00884|lncRNA|chr3:194510405:194510647:+	0	+
#Deleted in new
chr3	194517070	194518279	ENSG00000233058.1|LINC00884|lncRNA|chr3:194517070:194518279:+	0	+
#Deleted in new
chr3	194589020	194589142	ENSG00000231770.5|TMEM44-AS1|lncRNA|chr3:194589020:194589142:+	0	+
#Deleted in new
chr3	194589024	194589142	ENSG00000231770.5|TMEM44-AS1|lncRNA|chr3:194589024:194589142:+	0	+
#Partially deleted in new
chr3	194589767	194589946	ENSG00000145014.17|TMEM44|pc|chr3:194589767:194589946:-	0	-
#Deleted in new
chr3	194596868	194597329	ENSG00000145014.17|TMEM44|pc|chr3:194596868:194597329:-	0	-
#Deleted in new
chr3	194616480	194616587	ENSG00000145014.17|TMEM44|pc|chr3:194616480:194616587:-	0	-
#Deleted in new
chr3	194616769	194616891	ENSG00000145014.17|TMEM44|pc|chr3:194616769:194616891:-	0	-
#Partially deleted in new
chr3	194622547	194623310	ENSG00000145014.17|TMEM44|pc|chr3:194622547:194623310:-	0	-
#Partially deleted in new
chr3	194633562	194633689	ENSG00000145014.17|TMEM44|pc|chr3:194633562:194633689:-	0	-
#Deleted in new
chr3	194637504	194637664	ENSG00000272707.1|AC046143.2|lncRNA|chr3:194637504:194637664:-	0	-
#Partially deleted in new
chr3	194640787	194642247	ENSG00000041802.10|LSG1|pc|chr3:194640787:194642247:-	0	-
#Partially deleted in new
chr3	194644674	194645401	ENSG00000229334.1|AC046143.1|lncRNA|chr3:194644674:194645401:+	0	+
#Partially deleted in new
chr3	194646163	194646444	ENSG00000041802.10|LSG1|pc|chr3:194646163:194646444:-	0	-
#Deleted in new
chr3	194706837	194706964	ENSG00000233987.1|AC106706.1|lncRNA|chr3:194706837:194706964:+	0	+
#Partially deleted in new
chr3	194710014	194710189	ENSG00000237222.3|LINC01968|lncRNA|chr3:194710014:194710189:+	0	+
#Deleted in new
chr3	194765237	194765610	ENSG00000230401.1|LINC01972|lncRNA|chr3:194765237:194765610:-	0	-
#Deleted in new
chr3	194772155	194772271	ENSG00000237222.3|LINC01968|lncRNA|chr3:194772155:194772271:+	0	+
#Deleted in new
chr3	195085901	195086022	ENSG00000173950.15|XXYLT1|pc|chr3:195085901:195086022:-	0	-
#Partially deleted in new
chr3	195095919	195096057	ENSG00000233303.1|XXYLT1-AS1|lncRNA|chr3:195095919:195096057:+	0	+
#Deleted in new
chr3	195122025	195122192	ENSG00000173950.15|XXYLT1|pc|chr3:195122025:195122192:-	0	-
#Deleted in new
chr3	195147870	195148105	ENSG00000230266.1|XXYLT1-AS2|lncRNA|chr3:195147870:195148105:+	0	+
#Deleted in new
chr3	195147890	195148105	ENSG00000230266.1|XXYLT1-AS2|lncRNA|chr3:195147890:195148105:+	0	+
#Deleted in new
chr3	195152256	195152463	ENSG00000230266.1|XXYLT1-AS2|lncRNA|chr3:195152256:195152463:+	0	+
#Deleted in new
chr3	195183475	195183629	ENSG00000173950.15|XXYLT1|pc|chr3:195183475:195183629:-	0	-
#Deleted in new
chr3	195207424	195207498	ENSG00000173950.15|XXYLT1|pc|chr3:195207424:195207498:-	0	-
#Deleted in new
chr3	195209336	195209614	ENSG00000173950.15|XXYLT1|pc|chr3:195209336:195209614:-	0	-
#Deleted in new
chr3	195209336	195209866	ENSG00000173950.15|XXYLT1|pc|chr3:195209336:195209866:-	0	-
#Deleted in new
chr3	195247771	195247856	ENSG00000173950.15|XXYLT1|pc|chr3:195247771:195247856:-	0	-
#Deleted in new
chr3	195247771	195247920	ENSG00000173950.15|XXYLT1|pc|chr3:195247771:195247920:-	0	-
#Deleted in new
chr3	195260013	195260080	ENSG00000173950.15|XXYLT1|pc|chr3:195260013:195260080:-	0	-
#Deleted in new
chr3	195356067	195356212	ENSG00000114331.13|ACAP2|pc|chr3:195356067:195356212:-	0	-
#Deleted in new
chr3	195357690	195357784	ENSG00000114331.13|ACAP2|pc|chr3:195357690:195357784:-	0	-
#Deleted in new
chr3	195410706	195411009	ENSG00000114331.13|ACAP2|pc|chr3:195410706:195411009:-	0	-
#Deleted in new
chr3	195412845	195412916	ENSG00000114331.13|ACAP2|pc|chr3:195412845:195412916:-	0	-
#Deleted in new
chr3	195527757	195527902	ENSG00000184203.7|PPP1R2|pc|chr3:195527757:195527902:-	0	-
#Deleted in new
chr3	195527889	195527902	ENSG00000184203.7|PPP1R2|pc|chr3:195527889:195527902:-	0	-
#Partially deleted in new
chr3	195550287	195550581	ENSG00000223711.1|AC069213.1|lncRNA|chr3:195550287:195550581:+	0	+
#Deleted in new
chr3	195577061	195577183	ENSG00000189058.8|APOD|pc|chr3:195577061:195577183:-	0	-
#Deleted in new
chr3	195582616	195582739	ENSG00000189058.8|APOD|pc|chr3:195582616:195582739:-	0	-
#Deleted in new
chr3	195583066	195583202	ENSG00000189058.8|APOD|pc|chr3:195583066:195583202:-	0	-
#Deleted in new
chr3	195655564	195656535	ENSG00000229178.1|AC233280.1|lncRNA|chr3:195655564:195656535:-	0	-
#Deleted in new
chr3	195656640	195656730	ENSG00000229178.1|AC233280.1|lncRNA|chr3:195656640:195656730:-	0	-
#Deleted in new
chr3	195680891	195680961	ENSG00000242086.8|LINC00969|lncRNA|chr3:195680891:195680961:+	0	+
#Partially deleted in new
chr3	195681868	195682217	ENSG00000242086.8|LINC00969|lncRNA|chr3:195681868:195682217:+	0	+
#Deleted in new
chr3	195681987	195682217	ENSG00000242086.8|LINC00969|lncRNA|chr3:195681987:195682217:+	0	+
#Partially deleted in new
chr3	195686297	195686389	ENSG00000242086.8|LINC00969|lncRNA|chr3:195686297:195686389:+	0	+
#Partially deleted in new
chr3	195686302	195686347	ENSG00000242086.8|LINC00969|lncRNA|chr3:195686302:195686347:+	0	+
#Deleted in new
chr3	195686314	195686389	ENSG00000242086.8|LINC00969|lncRNA|chr3:195686314:195686389:+	0	+
#Deleted in new
chr3	195686416	195686618	ENSG00000242086.8|LINC00969|lncRNA|chr3:195686416:195686618:+	0	+
#Deleted in new
chr3	195686431	195686618	ENSG00000242086.8|LINC00969|lncRNA|chr3:195686431:195686618:+	0	+
#Deleted in new
chr3	195686603	195686718	ENSG00000242086.8|LINC00969|lncRNA|chr3:195686603:195686718:+	0	+
#Deleted in new
chr3	195686606	195686718	ENSG00000242086.8|LINC00969|lncRNA|chr3:195686606:195686718:+	0	+
#Deleted in new
chr3	195687820	195688319	ENSG00000242086.8|LINC00969|lncRNA|chr3:195687820:195688319:+	0	+
#Partially deleted in new
chr3	195688110	195688797	ENSG00000242086.8|LINC00969|lncRNA|chr3:195688110:195688797:+	0	+
#Deleted in new
chr3	195688191	195688319	ENSG00000242086.8|LINC00969|lncRNA|chr3:195688191:195688319:+	0	+
#Deleted in new
chr3	195688197	195688319	ENSG00000242086.8|LINC00969|lncRNA|chr3:195688197:195688319:+	0	+
#Deleted in new
chr3	195688201	195688319	ENSG00000242086.8|LINC00969|lncRNA|chr3:195688201:195688319:+	0	+
#Deleted in new
chr3	195688532	195688553	ENSG00000242086.8|LINC00969|lncRNA|chr3:195688532:195688553:+	0	+
#Deleted in new
chr3	195689336	195689438	ENSG00000242086.8|LINC00969|lncRNA|chr3:195689336:195689438:+	0	+
#Deleted in new
chr3	195689338	195689438	ENSG00000242086.8|LINC00969|lncRNA|chr3:195689338:195689438:+	0	+
#Deleted in new
chr3	195689350	195689438	ENSG00000242086.8|LINC00969|lncRNA|chr3:195689350:195689438:+	0	+
#Deleted in new
chr3	195689374	195689438	ENSG00000242086.8|LINC00969|lncRNA|chr3:195689374:195689438:+	0	+
#Deleted in new
chr3	195689377	195689438	ENSG00000242086.8|LINC00969|lncRNA|chr3:195689377:195689438:+	0	+
#Deleted in new
chr3	195689397	195689438	ENSG00000242086.8|LINC00969|lncRNA|chr3:195689397:195689438:+	0	+
#Deleted in new
chr3	195689413	195689438	ENSG00000242086.8|LINC00969|lncRNA|chr3:195689413:195689438:+	0	+
#Deleted in new
chr3	195689424	195689608	ENSG00000242086.8|LINC00969|lncRNA|chr3:195689424:195689608:+	0	+
#Deleted in new
chr3	195689545	195689608	ENSG00000242086.8|LINC00969|lncRNA|chr3:195689545:195689608:+	0	+
#Deleted in new
chr3	195693349	195693495	ENSG00000242086.8|LINC00969|lncRNA|chr3:195693349:195693495:+	0	+
#Deleted in new
chr3	195696360	195696425	ENSG00000242086.8|LINC00969|lncRNA|chr3:195696360:195696425:+	0	+
#Deleted in new
chr3	195696360	195696479	ENSG00000242086.8|LINC00969|lncRNA|chr3:195696360:195696479:+	0	+
#Deleted in new
chr3	195696360	195696524	ENSG00000242086.8|LINC00969|lncRNA|chr3:195696360:195696524:+	0	+
#Deleted in new
chr3	195696360	195696541	ENSG00000242086.8|LINC00969|lncRNA|chr3:195696360:195696541:+	0	+
#Deleted in new
chr3	195696360	195696554	ENSG00000242086.8|LINC00969|lncRNA|chr3:195696360:195696554:+	0	+
#Deleted in new
chr3	195696360	195696589	ENSG00000242086.8|LINC00969|lncRNA|chr3:195696360:195696589:+	0	+
#Deleted in new
chr3	195696436	195696589	ENSG00000242086.8|LINC00969|lncRNA|chr3:195696436:195696589:+	0	+
#Deleted in new
chr3	195696501	195696589	ENSG00000242086.8|LINC00969|lncRNA|chr3:195696501:195696589:+	0	+
#Deleted in new
chr3	195698645	195699207	ENSG00000242086.8|LINC00969|lncRNA|chr3:195698645:195699207:+	0	+
#Deleted in new
chr3	195698662	195699207	ENSG00000242086.8|LINC00969|lncRNA|chr3:195698662:195699207:+	0	+
#Deleted in new
chr3	195699029	195699116	ENSG00000242086.8|LINC00969|lncRNA|chr3:195699029:195699116:+	0	+
#Deleted in new
chr3	195699029	195699170	ENSG00000242086.8|LINC00969|lncRNA|chr3:195699029:195699170:+	0	+
#Deleted in new
chr3	195699029	195699178	ENSG00000242086.8|LINC00969|lncRNA|chr3:195699029:195699178:+	0	+
#Deleted in new
chr3	195699029	195699207	ENSG00000242086.8|LINC00969|lncRNA|chr3:195699029:195699207:+	0	+
#Deleted in new
chr3	195699029	195699314	ENSG00000242086.8|LINC00969|lncRNA|chr3:195699029:195699314:+	0	+
#Deleted in new
chr3	195699038	195699207	ENSG00000242086.8|LINC00969|lncRNA|chr3:195699038:195699207:+	0	+
#Deleted in new
chr3	195699082	195699207	ENSG00000242086.8|LINC00969|lncRNA|chr3:195699082:195699207:+	0	+
#Deleted in new
chr3	195699097	195699207	ENSG00000242086.8|LINC00969|lncRNA|chr3:195699097:195699207:+	0	+
#Deleted in new
chr3	195699147	195699207	ENSG00000242086.8|LINC00969|lncRNA|chr3:195699147:195699207:+	0	+
#Partially deleted in new
chr3	195700320	195701669	ENSG00000242086.8|LINC00969|lncRNA|chr3:195700320:195701669:+	0	+
#Deleted in new
chr3	195702182	195702442	ENSG00000242086.8|LINC00969|lncRNA|chr3:195702182:195702442:+	0	+
#Deleted in new
chr3	195706137	195706311	ENSG00000242086.8|LINC00969|lncRNA|chr3:195706137:195706311:+	0	+
#Deleted in new
chr3	195706694	195707126	ENSG00000242086.8|LINC00969|lncRNA|chr3:195706694:195707126:+	0	+
#Deleted in new
chr3	195707005	195707126	ENSG00000242086.8|LINC00969|lncRNA|chr3:195707005:195707126:+	0	+
#Deleted in new
chr3	195707028	195707126	ENSG00000242086.8|LINC00969|lncRNA|chr3:195707028:195707126:+	0	+
#Partially deleted in new
chr3	195708746	195709176	ENSG00000242086.8|LINC00969|lncRNA|chr3:195708746:195709176:+	0	+
#Partially deleted in new
chr3	195708746	195709219	ENSG00000242086.8|LINC00969|lncRNA|chr3:195708746:195709219:+	0	+
#Partially deleted in new
chr3	195708746	195709386	ENSG00000242086.8|LINC00969|lncRNA|chr3:195708746:195709386:+	0	+
#Partially deleted in new
chr3	195708746	195709563	ENSG00000242086.8|LINC00969|lncRNA|chr3:195708746:195709563:+	0	+
#Partially deleted in new
chr3	195708746	195709587	ENSG00000242086.8|LINC00969|lncRNA|chr3:195708746:195709587:+	0	+
#Deleted in new
chr3	195708983	195709272	ENSG00000242086.8|LINC00969|lncRNA|chr3:195708983:195709272:+	0	+
#Deleted in new
chr3	195712097	195712123	ENSG00000242086.8|LINC00969|lncRNA|chr3:195712097:195712123:+	0	+
#Partially deleted in new
chr3	195715020	195715082	ENSG00000242086.8|LINC00969|lncRNA|chr3:195715020:195715082:+	0	+
#Deleted in new
chr3	195716272	195716670	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716272:195716670:+	0	+
#Deleted in new
chr3	195716387	195716440	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716387:195716440:+	0	+
#Deleted in new
chr3	195716387	195716564	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716387:195716564:+	0	+
#Deleted in new
chr3	195716387	195716589	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716387:195716589:+	0	+
#Deleted in new
chr3	195716387	195716624	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716387:195716624:+	0	+
#Deleted in new
chr3	195716387	195716645	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716387:195716645:+	0	+
#Deleted in new
chr3	195716387	195716646	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716387:195716646:+	0	+
#Deleted in new
chr3	195716387	195716672	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716387:195716672:+	0	+
#Deleted in new
chr3	195716387	195716673	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716387:195716673:+	0	+
#Deleted in new
chr3	195716387	195716674	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716387:195716674:+	0	+
#Deleted in new
chr3	195716387	195716970	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716387:195716970:+	0	+
#Deleted in new
chr3	195716757	195716811	ENSG00000242086.8|LINC00969|lncRNA|chr3:195716757:195716811:+	0	+
#Deleted in new
chr3	195717511	195717655	ENSG00000242086.8|LINC00969|lncRNA|chr3:195717511:195717655:+	0	+
#Deleted in new
chr3	195717511	195717725	ENSG00000242086.8|LINC00969|lncRNA|chr3:195717511:195717725:+	0	+
#Deleted in new
chr3	195717511	195717732	ENSG00000242086.8|LINC00969|lncRNA|chr3:195717511:195717732:+	0	+
#Deleted in new
chr3	195717511	195717739	ENSG00000242086.8|LINC00969|lncRNA|chr3:195717511:195717739:+	0	+
#Deleted in new
chr3	195717511	195717778	ENSG00000242086.8|LINC00969|lncRNA|chr3:195717511:195717778:+	0	+
#Deleted in new
chr3	195717511	195717780	ENSG00000242086.8|LINC00969|lncRNA|chr3:195717511:195717780:+	0	+
#Deleted in new
chr3	195717570	195717746	ENSG00000242086.8|LINC00969|lncRNA|chr3:195717570:195717746:+	0	+
#Deleted in new
chr3	195717570	195717777	ENSG00000242086.8|LINC00969|lncRNA|chr3:195717570:195717777:+	0	+
#Deleted in new
chr3	195717913	195718009	ENSG00000242086.8|LINC00969|lncRNA|chr3:195717913:195718009:+	0	+
#Deleted in new
chr3	195717913	195718119	ENSG00000242086.8|LINC00969|lncRNA|chr3:195717913:195718119:+	0	+
#Deleted in new
chr3	195717913	195718196	ENSG00000242086.8|LINC00969|lncRNA|chr3:195717913:195718196:+	0	+
#Deleted in new
chr3	195718023	195718196	ENSG00000242086.8|LINC00969|lncRNA|chr3:195718023:195718196:+	0	+
#Deleted in new
chr3	195718026	195718196	ENSG00000242086.8|LINC00969|lncRNA|chr3:195718026:195718196:+	0	+
#Deleted in new
chr3	195718043	195718196	ENSG00000242086.8|LINC00969|lncRNA|chr3:195718043:195718196:+	0	+
#Deleted in new
chr3	195718602	195718675	ENSG00000242086.8|LINC00969|lncRNA|chr3:195718602:195718675:+	0	+
#Deleted in new
chr3	195718602	195718887	ENSG00000242086.8|LINC00969|lncRNA|chr3:195718602:195718887:+	0	+
#Deleted in new
chr3	195718602	195719010	ENSG00000242086.8|LINC00969|lncRNA|chr3:195718602:195719010:+	0	+
#Deleted in new
chr3	195721714	195722039	ENSG00000242086.8|LINC00969|lncRNA|chr3:195721714:195722039:+	0	+
#Deleted in new
chr3	195722500	195722648	ENSG00000242086.8|LINC00969|lncRNA|chr3:195722500:195722648:+	0	+
#Deleted in new
chr3	195722500	195722712	ENSG00000242086.8|LINC00969|lncRNA|chr3:195722500:195722712:+	0	+
#Deleted in new
chr3	195722500	195722742	ENSG00000242086.8|LINC00969|lncRNA|chr3:195722500:195722742:+	0	+
#Deleted in new
chr3	195722500	195722818	ENSG00000176945.16|MUC20|pc|chr3:195722500:195722818:+	0	+
#Deleted in new
chr3	195722500	195722818	ENSG00000242086.8|LINC00969|lncRNA|chr3:195722500:195722818:+	0	+
#Deleted in new
chr3	195724246	195724301	ENSG00000242086.8|LINC00969|lncRNA|chr3:195724246:195724301:+	0	+
#Deleted in new
chr3	195729342	195729535	ENSG00000242086.8|LINC00969|lncRNA|chr3:195729342:195729535:+	0	+
#Deleted in new
chr3	195729342	195729551	ENSG00000242086.8|LINC00969|lncRNA|chr3:195729342:195729551:+	0	+
#Deleted in new
chr3	195734755	195734776	ENSG00000242086.8|LINC00969|lncRNA|chr3:195734755:195734776:+	0	+
#Deleted in new
chr3	195734755	195735033	ENSG00000176945.16|MUC20|pc|chr3:195734755:195735033:+	0	+
#Deleted in new
chr3	195734755	195735064	ENSG00000242086.8|LINC00969|lncRNA|chr3:195734755:195735064:+	0	+
#Deleted in new
chr3	195739846	195739930	ENSG00000176945.16|MUC20|pc|chr3:195739846:195739930:+	0	+
#Deleted in new
chr3	195739846	195739964	ENSG00000242086.8|LINC00969|lncRNA|chr3:195739846:195739964:+	0	+
#Deleted in new
chr3	195740981	195741123	ENSG00000176945.16|MUC20|pc|chr3:195740981:195741123:+	0	+
#Deleted in new
chr3	195778288	195778455	ENSG00000145113.21|MUC4|pc|chr3:195778288:195778455:-	0	-
#Deleted in new
chr3	195778302	195778455	ENSG00000145113.21|MUC4|pc|chr3:195778302:195778455:-	0	-
#Deleted in new
chr3	195778789	195778810	ENSG00000145113.21|MUC4|pc|chr3:195778789:195778810:-	0	-
#Split in new
chr3	195778789	195791497	ENSG00000145113.21|MUC4|pc|chr3:195778789:195791497:-	0	-
#Partially deleted in new
chr3	195809643	195810330	ENSG00000145113.21|MUC4|pc|chr3:195809643:195810330:-	0	-
#Deleted in new
chr3	195854132	195854228	ENSG00000223783.1|LINC01983|lncRNA|chr3:195854132:195854228:-	0	-
#Partially deleted in new
chr3	195894605	195894730	ENSG00000061938.17|TNK2|pc|chr3:195894605:195894730:-	0	-
#Deleted in new
chr3	196027182	196027260	ENSG00000072274.12|TFRC|pc|chr3:196027182:196027260:-	0	-
#Partially deleted in new
chr3	196057961	196058365	ENSG00000072274.12|TFRC|pc|chr3:196057961:196058365:-	0	-
#Partially deleted in new
chr3	196058573	196058958	ENSG00000072274.12|TFRC|pc|chr3:196058573:196058958:-	0	-
#Deleted in new
chr3	196142635	196143000	ENSG00000224652.1|LINC00885|lncRNA|chr3:196142635:196143000:+	0	+
#Deleted in new
chr3	196143905	196144377	ENSG00000224652.1|LINC00885|lncRNA|chr3:196143905:196144377:+	0	+
#Deleted in new
chr3	196159899	196160890	ENSG00000224652.1|LINC00885|lncRNA|chr3:196159899:196160890:+	0	+
#Deleted in new
chr3	196199345	196199522	ENSG00000163958.13|ZDHHC19|pc|chr3:196199345:196199522:-	0	-
#Deleted in new
chr3	196199345	196199652	ENSG00000163958.13|ZDHHC19|pc|chr3:196199345:196199652:-	0	-
#Deleted in new
chr3	196208773	196208837	ENSG00000163958.13|ZDHHC19|pc|chr3:196208773:196208837:-	0	-
#Deleted in new
chr3	196213720	196213897	ENSG00000163959.9|SLC51A|pc|chr3:196213720:196213897:+	0	+
#Deleted in new
chr3	196214221	196214373	ENSG00000161217.11|PCYT1A|pc|chr3:196214221:196214373:-	0	-
#Deleted in new
chr3	196214422	196214511	ENSG00000163959.9|SLC51A|pc|chr3:196214422:196214511:+	0	+
#Deleted in new
chr3	196223880	196224001	ENSG00000163959.9|SLC51A|pc|chr3:196223880:196224001:+	0	+
#Deleted in new
chr3	196225728	196225796	ENSG00000163959.9|SLC51A|pc|chr3:196225728:196225796:+	0	+
#Deleted in new
chr3	196226515	196226561	ENSG00000163959.9|SLC51A|pc|chr3:196226515:196226561:+	0	+
#Partially deleted in new
chr3	196233449	196234179	ENSG00000163959.9|SLC51A|pc|chr3:196233449:196234179:+	0	+
#Deleted in new
chr3	196240620	196240880	ENSG00000163959.9|SLC51A|pc|chr3:196240620:196240880:+	0	+
#Deleted in new
chr3	196241527	196241611	ENSG00000161217.11|PCYT1A|pc|chr3:196241527:196241611:-	0	-
#Duplicated in new
chr3	196250541	196250662	ENSG00000228028.2|AC069257.1|lncRNA|chr3:196250541:196250662:+	0	+
#Duplicated in new
chr3	196250548	196250689	ENSG00000228028.2|AC069257.1|lncRNA|chr3:196250548:196250689:+	0	+
#Partially deleted in new
chr3	196251373	196251413	ENSG00000228028.2|AC069257.1|lncRNA|chr3:196251373:196251413:+	0	+
#Deleted in new
chr3	196267279	196267365	ENSG00000161217.11|PCYT1A|pc|chr3:196267279:196267365:-	0	-
#Deleted in new
chr3	196283474	196283538	ENSG00000161217.11|PCYT1A|pc|chr3:196283474:196283538:-	0	-
#Deleted in new
chr3	196292341	196292544	ENSG00000213123.10|TCTEX1D2|pc|chr3:196292341:196292544:-	0	-
#Deleted in new
chr3	196305655	196305773	ENSG00000213123.10|TCTEX1D2|pc|chr3:196305655:196305773:-	0	-
#Partially deleted in new
chr3	196318329	196318437	ENSG00000235897.1|TM4SF19-AS1|lncRNA|chr3:196318329:196318437:+	0	+
#Deleted in new
chr3	196318349	196318437	ENSG00000235897.1|TM4SF19-AS1|lncRNA|chr3:196318349:196318437:+	0	+
#Deleted in new
chr3	196318405	196318437	ENSG00000235897.1|TM4SF19-AS1|lncRNA|chr3:196318405:196318437:+	0	+
#Deleted in new
chr3	196319341	196320098	ENSG00000145107.15|TM4SF19|pc|chr3:196319341:196320098:-	0	-
#Deleted in new
chr3	196323459	196323673	ENSG00000235897.1|TM4SF19-AS1|lncRNA|chr3:196323459:196323673:+	0	+
#Deleted in new
chr3	196400128	196400732	ENSG00000163960.11|UBXN7|pc|chr3:196400128:196400732:-	0	-
#Deleted in new
chr3	196414644	196414684	ENSG00000163960.11|UBXN7|pc|chr3:196414644:196414684:-	0	-
#Deleted in new
chr3	196416156	196416235	ENSG00000163960.11|UBXN7|pc|chr3:196416156:196416235:-	0	-
#Deleted in new
chr3	196474800	196475394	ENSG00000273013.1|AC117490.2|lncRNA|chr3:196474800:196475394:+	0	+
#Deleted in new
chr3	196475230	196475312	ENSG00000163961.4|RNF168|pc|chr3:196475230:196475312:-	0	-
#Deleted in new
chr3	196631497	196631645	ENSG00000232065.1|LINC01063|lncRNA|chr3:196631497:196631645:-	0	-
#Deleted in new
chr3	196717808	196717954	ENSG00000163964.14|PIGX|pc|chr3:196717808:196717954:+	0	+
#Deleted in new
chr3	196721176	196721356	ENSG00000163964.14|PIGX|pc|chr3:196721176:196721356:+	0	+
#Deleted in new
chr3	196726654	196726771	ENSG00000163964.14|PIGX|pc|chr3:196726654:196726771:+	0	+
#Deleted in new
chr3	196728701	196728755	ENSG00000163964.14|PIGX|pc|chr3:196728701:196728755:+	0	+
#Deleted in new
chr3	196867855	196868073	ENSG00000119231.10|SENP5|pc|chr3:196867855:196868073:+	0	+
#Deleted in new
chr3	196867944	196868073	ENSG00000119231.10|SENP5|pc|chr3:196867944:196868073:+	0	+
#Deleted in new
chr3	196904944	196905224	ENSG00000119231.10|SENP5|pc|chr3:196904944:196905224:+	0	+
#Deleted in new
chr3	196912645	196913338	ENSG00000230732.4|AC016949.1|lncRNA|chr3:196912645:196913338:+	0	+
#Deleted in new
chr3	196913859	196914579	ENSG00000230732.4|AC016949.1|lncRNA|chr3:196913859:196914579:+	0	+
#Deleted in new
chr3	196940979	196941142	ENSG00000225578.1|NCBP2-AS1|lncRNA|chr3:196940979:196941142:+	0	+
#Deleted in new
chr3	196941486	196941602	ENSG00000114503.10|NCBP2|pc|chr3:196941486:196941602:-	0	-
#Partially deleted in new
chr3	196941486	196941856	ENSG00000114503.10|NCBP2|pc|chr3:196941486:196941856:-	0	-
#Deleted in new
chr3	196941708	196941769	ENSG00000114503.10|NCBP2|pc|chr3:196941708:196941769:-	0	-
#Deleted in new
chr3	196968686	196968833	ENSG00000119227.7|PIGZ|pc|chr3:196968686:196968833:-	0	-
#Deleted in new
chr3	196968686	196968871	ENSG00000119227.7|PIGZ|pc|chr3:196968686:196968871:-	0	-
#Deleted in new
chr3	196968686	196969060	ENSG00000119227.7|PIGZ|pc|chr3:196968686:196969060:-	0	-
#Deleted in new
chr3	196999459	196999572	ENSG00000228109.1|MELTF-AS1|lncRNA|chr3:196999459:196999572:+	0	+
#Deleted in new
chr3	197018952	197019801	ENSG00000163975.11|MELTF|pc|chr3:197018952:197019801:-	0	-
#Partially deleted in new
chr3	197450326	197450582	ENSG00000229912.1|AC128709.1|lncRNA|chr3:197450326:197450582:-	0	-
#Deleted in new
chr3	197451143	197451308	ENSG00000229912.1|AC128709.1|lncRNA|chr3:197451143:197451308:-	0	-
#Deleted in new
chr3	197458184	197458323	ENSG00000235126.1|AC128709.2|lncRNA|chr3:197458184:197458323:-	0	-
#Split in new
chr3	197505261	197506986	ENSG00000272989.1|LINC02012|lncRNA|chr3:197505261:197506986:-	0	-
#Deleted in new
chr3	197528309	197530744	ENSG00000161267.11|BDH1|pc|chr3:197528309:197530744:-	0	-
#Deleted in new
chr3	197538305	197538484	ENSG00000161267.11|BDH1|pc|chr3:197538305:197538484:-	0	-
#Deleted in new
chr3	197538666	197538952	ENSG00000161267.11|BDH1|pc|chr3:197538666:197538952:-	0	-
#Deleted in new
chr3	197645668	197646017	ENSG00000273308.1|AC024560.3|lncRNA|chr3:197645668:197646017:+	0	+
#Deleted in new
chr3	197660564	197661777	ENSG00000236833.1|AC024560.1|lncRNA|chr3:197660564:197661777:-	0	-
#Deleted in new
chr3	197665499	197665757	ENSG00000236833.1|AC024560.1|lncRNA|chr3:197665499:197665757:-	0	-
#Partially deleted in new
chr3	197755669	197755834	ENSG00000122068.12|FYTTD1|pc|chr3:197755669:197755834:+	0	+
#Deleted in new
chr3	197763465	197763638	ENSG00000122068.12|FYTTD1|pc|chr3:197763465:197763638:+	0	+
#Deleted in new
chr3	197822830	197823465	ENSG00000186001.12|LRCH3|pc|chr3:197822830:197823465:+	0	+
#Deleted in new
chr3	197906367	197906695	ENSG00000114473.13|IQCG|pc|chr3:197906367:197906695:-	0	-
#Deleted in new
chr3	197912484	197912536	ENSG00000114473.13|IQCG|pc|chr3:197912484:197912536:-	0	-
#Deleted in new
chr3	197913350	197913495	ENSG00000114473.13|IQCG|pc|chr3:197913350:197913495:-	0	-
#Deleted in new
chr3	197916171	197916420	ENSG00000114473.13|IQCG|pc|chr3:197916171:197916420:-	0	-
#Deleted in new
chr3	197949372	197949449	ENSG00000114473.13|IQCG|pc|chr3:197949372:197949449:-	0	-
#Deleted in new
chr3	197952539	197952625	ENSG00000182899.14|RPL35A|pc|chr3:197952539:197952625:+	0	+
#Deleted in new
chr3	197953487	197953660	ENSG00000182899.14|RPL35A|pc|chr3:197953487:197953660:+	0	+
#Partially deleted in new
chr3	197955749	197956610	ENSG00000182899.14|RPL35A|pc|chr3:197955749:197956610:+	0	+
#Deleted in new
chr3	197956640	197959719	ENSG00000114473.13|IQCG|pc|chr3:197956640:197959719:-	0	-
#Deleted in new
chr3	197959528	197959595	ENSG00000114473.13|IQCG|pc|chr3:197959528:197959595:-	0	-
#Deleted in new
chr3	197959528	197959719	ENSG00000114473.13|IQCG|pc|chr3:197959528:197959719:-	0	-
#Partially deleted in new
chr3	197959844	197960015	ENSG00000114473.13|IQCG|pc|chr3:197959844:197960015:-	0	-
#Partially deleted in new
chr3	197959844	197960019	ENSG00000114473.13|IQCG|pc|chr3:197959844:197960019:-	0	-
#Deleted in new
chr3	198039146	198039234	ENSG00000232832.1|LMLN-AS1|lncRNA|chr3:198039146:198039234:-	0	-
#Deleted in new
chr3	1987368	1987470	ENSG00000225044.1|AC018814.1|lncRNA|chr3:1987368:1987470:-	0	-
#Deleted in new
chr3	19936140	19936334	ENSG00000163576.17|EFHB|pc|chr3:19936140:19936334:-	0	-
#Deleted in new
chr3	19970547	19970717	ENSG00000144566.10|RAB5A|pc|chr3:19970547:19970717:+	0	+
#Deleted in new
chr3	19979960	19980174	ENSG00000183977.13|PP2D1|pc|chr3:19979960:19980174:-	0	-
#Deleted in new
chr3	20012049	20012257	ENSG00000183977.13|PP2D1|pc|chr3:20012049:20012257:-	0	-
#Deleted in new
chr3	20012049	20012267	ENSG00000183977.13|PP2D1|pc|chr3:20012049:20012267:-	0	-
#Deleted in new
chr3	20012049	20012330	ENSG00000183977.13|PP2D1|pc|chr3:20012049:20012330:-	0	-
#Deleted in new
chr3	20160592	20161226	ENSG00000129810.14|SGO1|pc|chr3:20160592:20161226:-	0	-
#Deleted in new
chr3	20161008	20161226	ENSG00000129810.14|SGO1|pc|chr3:20161008:20161226:-	0	-
#Partially deleted in new
chr3	20170052	20170815	ENSG00000129810.14|SGO1|pc|chr3:20170052:20170815:-	0	-
#Partially deleted in new
chr3	20170060	20170815	ENSG00000129810.14|SGO1|pc|chr3:20170060:20170815:-	0	-
#Deleted in new
chr3	20185947	20186127	ENSG00000129810.14|SGO1|pc|chr3:20185947:20186127:-	0	-
#Partially deleted in new
chr3	20185947	20186206	ENSG00000129810.14|SGO1|pc|chr3:20185947:20186206:-	0	-
#Deleted in new
chr3	20185974	20186115	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20185974:20186115:+	0	+
#Deleted in new
chr3	20186354	20186658	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20186354:20186658:+	0	+
#Deleted in new
chr3	20186364	20186474	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20186364:20186474:+	0	+
#Deleted in new
chr3	20194349	20194411	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20194349:20194411:+	0	+
#Deleted in new
chr3	20222734	20222841	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20222734:20222841:+	0	+
#Deleted in new
chr3	20234604	20234701	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20234604:20234701:+	0	+
#Deleted in new
chr3	20289357	20289423	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20289357:20289423:+	0	+
#Deleted in new
chr3	20342467	20344036	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20342467:20344036:+	0	+
#Deleted in new
chr3	20345659	20345782	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20345659:20345782:+	0	+
#Deleted in new
chr3	20345659	20346066	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20345659:20346066:+	0	+
#Deleted in new
chr3	20346024	20346066	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20346024:20346066:+	0	+
#Deleted in new
chr3	20347996	20348089	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20347996:20348089:+	0	+
#Deleted in new
chr3	20350714	20350772	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20350714:20350772:+	0	+
#Deleted in new
chr3	20350714	20350928	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20350714:20350928:+	0	+
#Deleted in new
chr3	20359521	20359589	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20359521:20359589:+	0	+
#Deleted in new
chr3	20360629	20360684	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20360629:20360684:+	0	+
#Deleted in new
chr3	20381174	20381300	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20381174:20381300:+	0	+
#Deleted in new
chr3	20388248	20390562	ENSG00000261734.1|AC116096.1|lncRNA|chr3:20388248:20390562:+	0	+
#Deleted in new
chr3	20699384	20699445	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20699384:20699445:+	0	+
#Deleted in new
chr3	20732383	20732500	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20732383:20732500:+	0	+
#Deleted in new
chr3	20811907	20811985	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20811907:20811985:+	0	+
#Deleted in new
chr3	20817885	20818047	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20817885:20818047:+	0	+
#Deleted in new
chr3	20848234	20848283	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20848234:20848283:+	0	+
#Deleted in new
chr3	20870288	20870336	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20870288:20870336:+	0	+
#Deleted in new
chr3	20871923	20871994	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20871923:20871994:+	0	+
#Deleted in new
chr3	20878310	20878835	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20878310:20878835:+	0	+
#Deleted in new
chr3	20905511	20905607	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:20905511:20905607:+	0	+
#Deleted in new
chr3	21006729	21008477	ENSG00000282987.1|AC099753.1|lncRNA|chr3:21006729:21008477:-	0	-
#Deleted in new
chr3	21034325	21034443	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:21034325:21034443:+	0	+
#Deleted in new
chr3	21041751	21041892	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:21041751:21041892:+	0	+
#Deleted in new
chr3	21042975	21043123	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:21042975:21043123:+	0	+
#Deleted in new
chr3	21085294	21085431	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:21085294:21085431:+	0	+
#Deleted in new
chr3	21145095	21145967	ENSG00000231304.2|SGO1-AS1|lncRNA|chr3:21145095:21145967:+	0	+
#Deleted in new
chr3	21224687	21224836	ENSG00000282987.1|AC099753.1|lncRNA|chr3:21224687:21224836:-	0	-
#Deleted in new
chr3	21226084	21226305	ENSG00000282987.1|AC099753.1|lncRNA|chr3:21226084:21226305:-	0	-
#Partially deleted in new
chr3	21412221	21421447	ENSG00000151789.10|ZNF385D|pc|chr3:21412221:21421447:-	0	-
#Deleted in new
chr3	21431039	21431124	ENSG00000151789.10|ZNF385D|pc|chr3:21431039:21431124:-	0	-
#Partially deleted in new
chr3	21437076	21437203	ENSG00000151789.10|ZNF385D|pc|chr3:21437076:21437203:-	0	-
#Deleted in new
chr3	2144129	2144241	ENSG00000227588.2|CNTN4-AS2|lncRNA|chr3:2144129:2144241:-	0	-
#Deleted in new
chr3	21441685	21441742	ENSG00000151789.10|ZNF385D|pc|chr3:21441685:21441742:-	0	-
#Deleted in new
chr3	21459331	21459449	ENSG00000151789.10|ZNF385D|pc|chr3:21459331:21459449:-	0	-
#Deleted in new
chr3	21511621	21511757	ENSG00000151789.10|ZNF385D|pc|chr3:21511621:21511757:-	0	-
#Deleted in new
chr3	21542815	21542995	ENSG00000225542.1|ZNF385D-AS1|lncRNA|chr3:21542815:21542995:+	0	+
#Deleted in new
chr3	21579188	21579381	ENSG00000225542.1|ZNF385D-AS1|lncRNA|chr3:21579188:21579381:+	0	+
#Deleted in new
chr3	21579627	21579959	ENSG00000225542.1|ZNF385D-AS1|lncRNA|chr3:21579627:21579959:+	0	+
#Deleted in new
chr3	21750894	21751114	ENSG00000151789.10|ZNF385D|pc|chr3:21750894:21751114:-	0	-
#Deleted in new
chr3	21750894	21751435	ENSG00000151789.10|ZNF385D|pc|chr3:21750894:21751435:-	0	-
#Deleted in new
chr3	21777607	21777776	ENSG00000151789.10|ZNF385D|pc|chr3:21777607:21777776:-	0	-
#Deleted in new
chr3	21849655	21849719	ENSG00000151789.10|ZNF385D|pc|chr3:21849655:21849719:-	0	-
#Deleted in new
chr3	21877839	21878158	ENSG00000151789.10|ZNF385D|pc|chr3:21877839:21878158:-	0	-
#Deleted in new
chr3	21942565	21942664	ENSG00000223351.5|ZNF385D-AS2|lncRNA|chr3:21942565:21942664:+	0	+
#Deleted in new
chr3	21957135	21957192	ENSG00000223351.5|ZNF385D-AS2|lncRNA|chr3:21957135:21957192:+	0	+
#Deleted in new
chr3	21957138	21957192	ENSG00000223351.5|ZNF385D-AS2|lncRNA|chr3:21957138:21957192:+	0	+
#Deleted in new
chr3	21958831	21958923	ENSG00000223351.5|ZNF385D-AS2|lncRNA|chr3:21958831:21958923:+	0	+
#Deleted in new
chr3	21961415	21961540	ENSG00000223351.5|ZNF385D-AS2|lncRNA|chr3:21961415:21961540:+	0	+
#Deleted in new
chr3	21978214	21978291	ENSG00000223351.5|ZNF385D-AS2|lncRNA|chr3:21978214:21978291:+	0	+
#Deleted in new
chr3	21979630	21979828	ENSG00000223351.5|ZNF385D-AS2|lncRNA|chr3:21979630:21979828:+	0	+
#Deleted in new
chr3	22133581	22133992	ENSG00000151789.10|ZNF385D|pc|chr3:22133581:22133992:-	0	-
#Deleted in new
chr3	22134318	22134391	ENSG00000151789.10|ZNF385D|pc|chr3:22134318:22134391:-	0	-
#Partially deleted in new
chr3	22168492	22169035	ENSG00000151789.10|ZNF385D|pc|chr3:22168492:22169035:-	0	-
#Deleted in new
chr3	22372449	22372632	ENSG00000151789.10|ZNF385D|pc|chr3:22372449:22372632:-	0	-
#Deleted in new
chr3	22372449	22372837	ENSG00000151789.10|ZNF385D|pc|chr3:22372449:22372837:-	0	-
#Deleted in new
chr3	22373054	22373193	ENSG00000151789.10|ZNF385D|pc|chr3:22373054:22373193:-	0	-
#Deleted in new
chr3	22373281	22373321	ENSG00000151789.10|ZNF385D|pc|chr3:22373281:22373321:-	0	-
#Partially deleted in new
chr3	2238828	2239068	ENSG00000144619.14|CNTN4|pc|chr3:2238828:2239068:+	0	+
#Deleted in new
chr3	23195069	23195414	ENSG00000233153.5|UBE2E2-AS1|lncRNA|chr3:23195069:23195414:-	0	-
#Deleted in new
chr3	23323514	23323586	ENSG00000182247.9|UBE2E2|pc|chr3:23323514:23323586:+	0	+
#Deleted in new
chr3	23756	23812	ENSG00000223587.1|LINC01986|lncRNA|chr3:23756:23812:+	0	+
#Deleted in new
chr3	23866270	23866482	ENSG00000170142.11|UBE2E1|pc|chr3:23866270:23866482:+	0	+
#Deleted in new
chr3	23888237	23888261	ENSG00000170142.11|UBE2E1|pc|chr3:23888237:23888261:+	0	+
#Partially deleted in new
chr3	23917532	23917665	ENSG00000174748.18|RPL15|pc|chr3:23917532:23917665:+	0	+
#Deleted in new
chr3	23921597	23923692	ENSG00000174748.18|RPL15|pc|chr3:23921597:23923692:+	0	+
#Deleted in new
chr3	23946322	23946591	ENSG00000197885.10|NKIRAS1|pc|chr3:23946322:23946591:-	0	-
#Deleted in new
chr3	23967	24501	ENSG00000223587.1|LINC01986|lncRNA|chr3:23967:24501:+	0	+
#Deleted in new
chr3	24099415	24099464	ENSG00000224074.3|LINC00691|lncRNA|chr3:24099415:24099464:-	0	-
#Deleted in new
chr3	24099973	24101546	ENSG00000224074.3|LINC00691|lncRNA|chr3:24099973:24101546:-	0	-
#Deleted in new
chr3	24100440	24101546	ENSG00000224074.3|LINC00691|lncRNA|chr3:24100440:24101546:-	0	-
#Deleted in new
chr3	24102579	24103223	ENSG00000224074.3|LINC00691|lncRNA|chr3:24102579:24103223:-	0	-
#Deleted in new
chr3	24102579	24103238	ENSG00000224074.3|LINC00691|lncRNA|chr3:24102579:24103238:-	0	-
#Deleted in new
chr3	24318357	24318494	ENSG00000151090.17|THRB|pc|chr3:24318357:24318494:-	0	-
#Deleted in new
chr3	24348557	24348614	ENSG00000151090.17|THRB|pc|chr3:24348557:24348614:-	0	-
#Deleted in new
chr3	24498624	24499374	ENSG00000228791.7|THRB-AS1|lncRNA|chr3:24498624:24499374:+	0	+
#Deleted in new
chr3	24499231	24499374	ENSG00000228791.7|THRB-AS1|lncRNA|chr3:24499231:24499374:+	0	+
#Deleted in new
chr3	24499513	24499580	ENSG00000272554.1|AC012087.1|lncRNA|chr3:24499513:24499580:-	0	-
#Deleted in new
chr3	24499531	24499580	ENSG00000228791.7|THRB-AS1|lncRNA|chr3:24499531:24499580:+	0	+
#Deleted in new
chr3	24499531	24499618	ENSG00000228791.7|THRB-AS1|lncRNA|chr3:24499531:24499618:+	0	+
#Deleted in new
chr3	24499531	24499677	ENSG00000228791.7|THRB-AS1|lncRNA|chr3:24499531:24499677:+	0	+
#Deleted in new
chr3	24499531	24500342	ENSG00000228791.7|THRB-AS1|lncRNA|chr3:24499531:24500342:+	0	+
#Deleted in new
chr3	24499543	24499677	ENSG00000228791.7|THRB-AS1|lncRNA|chr3:24499543:24499677:+	0	+
#Deleted in new
chr3	24515968	24516259	ENSG00000228791.7|THRB-AS1|lncRNA|chr3:24515968:24516259:+	0	+
#Deleted in new
chr3	24515968	24516661	ENSG00000228791.7|THRB-AS1|lncRNA|chr3:24515968:24516661:+	0	+
#Deleted in new
chr3	24533630	24533975	ENSG00000228791.7|THRB-AS1|lncRNA|chr3:24533630:24533975:+	0	+
#Deleted in new
chr3	24547191	24547251	ENSG00000228791.7|THRB-AS1|lncRNA|chr3:24547191:24547251:+	0	+
#Deleted in new
chr3	24833088	24833222	ENSG00000237838.1|AC092422.1|lncRNA|chr3:24833088:24833222:+	0	+
#Deleted in new
chr3	24858673	24858752	ENSG00000237838.1|AC092422.1|lncRNA|chr3:24858673:24858752:+	0	+
#Deleted in new
chr3	25060124	25060176	ENSG00000237838.1|AC092422.1|lncRNA|chr3:25060124:25060176:+	0	+
#Deleted in new
chr3	25782737	25782872	ENSG00000151092.16|NGLY1|pc|chr3:25782737:25782872:-	0	-
#Partially deleted in new
chr3	25784042	25784156	ENSG00000151092.16|NGLY1|pc|chr3:25784042:25784156:-	0	-
#Deleted in new
chr3	25784063	25784109	ENSG00000151093.7|OXSM|pc|chr3:25784063:25784109:+	0	+
#Partially deleted in new
chr3	25789766	25789986	ENSG00000151093.7|OXSM|pc|chr3:25789766:25789986:+	0	+
#Deleted in new
chr3	25789860	25790039	ENSG00000151092.16|NGLY1|pc|chr3:25789860:25790039:-	0	-
#Deleted in new
chr3	25790079	25790147	ENSG00000151093.7|OXSM|pc|chr3:25790079:25790147:+	0	+
#Deleted in new
chr3	25790089	25790147	ENSG00000151093.7|OXSM|pc|chr3:25790089:25790147:+	0	+
#Deleted in new
chr3	25790093	25790147	ENSG00000151093.7|OXSM|pc|chr3:25790093:25790147:+	0	+
#Deleted in new
chr3	25790479	25790816	ENSG00000151093.7|OXSM|pc|chr3:25790479:25790816:+	0	+
#Deleted in new
chr3	25790785	25790816	ENSG00000151093.7|OXSM|pc|chr3:25790785:25790816:+	0	+
#Deleted in new
chr3	25858532	25858798	ENSG00000230891.6|LINC00692|lncRNA|chr3:25858532:25858798:-	0	-
#Deleted in new
chr3	25858653	25858798	ENSG00000230891.6|LINC00692|lncRNA|chr3:25858653:25858798:-	0	-
#Deleted in new
chr3	25860690	25860752	ENSG00000230891.6|LINC00692|lncRNA|chr3:25860690:25860752:-	0	-
#Deleted in new
chr3	25862987	25863053	ENSG00000230891.6|LINC00692|lncRNA|chr3:25862987:25863053:-	0	-
#Deleted in new
chr3	25863284	25863379	ENSG00000230891.6|LINC00692|lncRNA|chr3:25863284:25863379:-	0	-
#Partially deleted in new
chr3	25870014	25870135	ENSG00000230891.6|LINC00692|lncRNA|chr3:25870014:25870135:-	0	-
#Deleted in new
chr3	25871800	25871896	ENSG00000230891.6|LINC00692|lncRNA|chr3:25871800:25871896:-	0	-
#Deleted in new
chr3	25872314	25872446	ENSG00000230891.6|LINC00692|lncRNA|chr3:25872314:25872446:-	0	-
#Deleted in new
chr3	25872314	25872482	ENSG00000230891.6|LINC00692|lncRNA|chr3:25872314:25872482:-	0	-
#Deleted in new
chr3	25873640	25873698	ENSG00000230891.6|LINC00692|lncRNA|chr3:25873640:25873698:-	0	-
#Deleted in new
chr3	25873640	25873700	ENSG00000230891.6|LINC00692|lncRNA|chr3:25873640:25873700:-	0	-
#Deleted in new
chr3	2629525	2629579	ENSG00000144619.14|CNTN4|pc|chr3:2629525:2629579:+	0	+
#Deleted in new
chr3	26694554	26694769	ENSG00000179796.11|LRRC3B|pc|chr3:26694554:26694769:+	0	+
#Deleted in new
chr3	27215606	27215880	ENSG00000163491.16|NEK10|pc|chr3:27215606:27215880:-	0	-
#Deleted in new
chr3	27215731	27215880	ENSG00000163491.16|NEK10|pc|chr3:27215731:27215880:-	0	-
#Deleted in new
chr3	27363686	27363844	ENSG00000163491.16|NEK10|pc|chr3:27363686:27363844:-	0	-
#Deleted in new
chr3	27367522	27367562	ENSG00000163491.16|NEK10|pc|chr3:27367522:27367562:-	0	-
#Deleted in new
chr3	27369030	27369196	ENSG00000163491.16|NEK10|pc|chr3:27369030:27369196:-	0	-
#Deleted in new
chr3	27369224	27369392	ENSG00000163491.16|NEK10|pc|chr3:27369224:27369392:-	0	-
#Deleted in new
chr3	27369224	27369421	ENSG00000163491.16|NEK10|pc|chr3:27369224:27369421:-	0	-
#Deleted in new
chr3	27369224	27369460	ENSG00000163491.16|NEK10|pc|chr3:27369224:27369460:-	0	-
#Deleted in new
chr3	27428267	27428286	ENSG00000033867.16|SLC4A7|pc|chr3:27428267:27428286:-	0	-
#Deleted in new
chr3	27638314	27638776	ENSG00000271943.1|AC098614.4|lncRNA|chr3:27638314:27638776:+	0	+
#Deleted in new
chr3	27821487	27821724	ENSG00000225548.5|LINC01980|lncRNA|chr3:27821487:27821724:+	0	+
#Deleted in new
chr3	27821597	27821724	ENSG00000225548.5|LINC01980|lncRNA|chr3:27821597:27821724:+	0	+
#Partially deleted in new
chr3	27830887	27833582	ENSG00000229243.1|LINC01981|lncRNA|chr3:27830887:27833582:-	0	-
#Deleted in new
chr3	27891094	27891301	ENSG00000225548.5|LINC01980|lncRNA|chr3:27891094:27891301:+	0	+
#Deleted in new
chr3	27997209	27997868	ENSG00000235493.1|LINC01967|lncRNA|chr3:27997209:27997868:-	0	-
#Deleted in new
chr3	27997543	27997868	ENSG00000235493.1|LINC01967|lncRNA|chr3:27997543:27997868:-	0	-
#Deleted in new
chr3	28028508	28028603	ENSG00000235493.1|LINC01967|lncRNA|chr3:28028508:28028603:-	0	-
#Deleted in new
chr3	28028508	28028604	ENSG00000235493.1|LINC01967|lncRNA|chr3:28028508:28028604:-	0	-
#Deleted in new
chr3	28253727	28253765	ENSG00000187118.12|CMC1|pc|chr3:28253727:28253765:+	0	+
#Deleted in new
chr3	28291800	28291954	ENSG00000187118.12|CMC1|pc|chr3:28291800:28291954:+	0	+
#Deleted in new
chr3	28291847	28291954	ENSG00000187118.12|CMC1|pc|chr3:28291847:28291954:+	0	+
#Deleted in new
chr3	28292735	28292964	ENSG00000187118.12|CMC1|pc|chr3:28292735:28292964:+	0	+
#Deleted in new
chr3	28294433	28294526	ENSG00000187118.12|CMC1|pc|chr3:28294433:28294526:+	0	+
#Deleted in new
chr3	28297100	28297161	ENSG00000187118.12|CMC1|pc|chr3:28297100:28297161:+	0	+
#Deleted in new
chr3	28298218	28298350	ENSG00000187118.12|CMC1|pc|chr3:28298218:28298350:+	0	+
#Partially deleted in new
chr3	28319201	28319313	ENSG00000163512.13|AZI2|pc|chr3:28319201:28319313:-	0	-
#Deleted in new
chr3	28331688	28331950	ENSG00000163512.13|AZI2|pc|chr3:28331688:28331950:-	0	-
#Deleted in new
chr3	28331689	28331954	ENSG00000163512.13|AZI2|pc|chr3:28331689:28331954:-	0	-
#Deleted in new
chr3	28331690	28331950	ENSG00000163512.13|AZI2|pc|chr3:28331690:28331950:-	0	-
#Deleted in new
chr3	28331690	28331954	ENSG00000163512.13|AZI2|pc|chr3:28331690:28331954:-	0	-
#Deleted in new
chr3	28331825	28331954	ENSG00000163512.13|AZI2|pc|chr3:28331825:28331954:-	0	-
#Deleted in new
chr3	28341511	28341596	ENSG00000163512.13|AZI2|pc|chr3:28341511:28341596:-	0	-
#Deleted in new
chr3	28341511	28341647	ENSG00000163512.13|AZI2|pc|chr3:28341511:28341647:-	0	-
#Deleted in new
chr3	28390497	28390617	ENSG00000206559.7|ZCWPW2|pc|chr3:28390497:28390617:+	0	+
#Deleted in new
chr3	28511002	28511127	ENSG00000206559.7|ZCWPW2|pc|chr3:28511002:28511127:+	0	+
#Deleted in new
chr3	28537110	28537251	ENSG00000206559.7|ZCWPW2|pc|chr3:28537110:28537251:+	0	+
#Deleted in new
chr3	28736008	28736163	ENSG00000144642.21|RBMS3|pc|chr3:28736008:28736163:+	0	+
#Deleted in new
chr3	28898483	28898562	ENSG00000144642.21|RBMS3|pc|chr3:28898483:28898562:+	0	+
#Partially deleted in new
chr3	28975604	28975718	ENSG00000144642.21|RBMS3|pc|chr3:28975604:28975718:+	0	+
#Deleted in new
chr3	29264193	29264757	ENSG00000235904.2|RBMS3-AS3|lncRNA|chr3:29264193:29264757:-	0	-
#Deleted in new
chr3	29290677	29290726	ENSG00000235904.2|RBMS3-AS3|lncRNA|chr3:29290677:29290726:-	0	-
#Deleted in new
chr3	29526250	29526325	ENSG00000203506.5|RBMS3-AS2|lncRNA|chr3:29526250:29526325:-	0	-
#Deleted in new
chr3	29537625	29537664	ENSG00000203506.5|RBMS3-AS2|lncRNA|chr3:29537625:29537664:-	0	-
#Deleted in new
chr3	29556337	29556428	ENSG00000203506.5|RBMS3-AS2|lncRNA|chr3:29556337:29556428:-	0	-
#Deleted in new
chr3	29615974	29616479	ENSG00000203506.5|RBMS3-AS2|lncRNA|chr3:29615974:29616479:-	0	-
#Deleted in new
chr3	29616056	29616226	ENSG00000203506.5|RBMS3-AS2|lncRNA|chr3:29616056:29616226:-	0	-
#Deleted in new
chr3	29616056	29616479	ENSG00000203506.5|RBMS3-AS2|lncRNA|chr3:29616056:29616479:-	0	-
#Deleted in new
chr3	29616310	29616479	ENSG00000203506.5|RBMS3-AS2|lncRNA|chr3:29616310:29616479:-	0	-
#Deleted in new
chr3	29616325	29616479	ENSG00000203506.5|RBMS3-AS2|lncRNA|chr3:29616325:29616479:-	0	-
#Deleted in new
chr3	29616341	29616447	ENSG00000203506.5|RBMS3-AS2|lncRNA|chr3:29616341:29616447:-	0	-
#Deleted in new
chr3	29616341	29616474	ENSG00000203506.5|RBMS3-AS2|lncRNA|chr3:29616341:29616474:-	0	-
#Deleted in new
chr3	29641093	29641147	ENSG00000203506.5|RBMS3-AS2|lncRNA|chr3:29641093:29641147:-	0	-
#Deleted in new
chr3	29924750	29925243	ENSG00000144642.21|RBMS3|pc|chr3:29924750:29925243:+	0	+
#Deleted in new
chr3	29926970	29927173	ENSG00000235593.1|RBMS3-AS1|lncRNA|chr3:29926970:29927173:-	0	-
#Deleted in new
chr3	2999047	2999144	ENSG00000144619.14|CNTN4|pc|chr3:2999047:2999144:+	0	+
#Partially deleted in new
chr3	30524989	30525447	ENSG00000227549.1|AC116035.1|lncRNA|chr3:30524989:30525447:-	0	-
#Deleted in new
chr3	30526154	30526213	ENSG00000227549.1|AC116035.1|lncRNA|chr3:30526154:30526213:-	0	-
#Deleted in new
chr3	30526831	30527185	ENSG00000227260.1|LINC01985|lncRNA|chr3:30526831:30527185:+	0	+
#Partially deleted in new
chr3	3061066	3061196	ENSG00000237990.3|CNTN4-AS1|lncRNA|chr3:3061066:3061196:-	0	-
#Deleted in new
chr3	30697660	30699576	ENSG00000261468.1|AC096921.2|lncRNA|chr3:30697660:30699576:+	0	+
#Deleted in new
chr3	30778714	30779073	ENSG00000144644.14|GADL1|pc|chr3:30778714:30779073:-	0	-
#Partially deleted in new
chr3	30797676	30801088	ENSG00000144644.14|GADL1|pc|chr3:30797676:30801088:-	0	-
#Deleted in new
chr3	3090172	3090256	ENSG00000091181.19|IL5RA|pc|chr3:3090172:3090256:-	0	-
#Deleted in new
chr3	3126559	3126613	ENSG00000091181.19|IL5RA|pc|chr3:3126559:3126613:-	0	-
#Deleted in new
chr3	3126915	3126990	ENSG00000072756.16|TRNT1|pc|chr3:3126915:3126990:+	0	+
#Deleted in new
chr3	3126950	3126990	ENSG00000072756.16|TRNT1|pc|chr3:3126950:3126990:+	0	+
#Deleted in new
chr3	3126951	3126990	ENSG00000072756.16|TRNT1|pc|chr3:3126951:3126990:+	0	+
#Deleted in new
chr3	3126953	3126990	ENSG00000072756.16|TRNT1|pc|chr3:3126953:3126990:+	0	+
#Deleted in new
chr3	3126964	3126990	ENSG00000072756.16|TRNT1|pc|chr3:3126964:3126990:+	0	+
#Deleted in new
chr3	3126979	3127289	ENSG00000072756.16|TRNT1|pc|chr3:3126979:3127289:+	0	+
#Deleted in new
chr3	3127019	3127289	ENSG00000072756.16|TRNT1|pc|chr3:3127019:3127289:+	0	+
#Deleted in new
chr3	3127019	3128018	ENSG00000072756.16|TRNT1|pc|chr3:3127019:3128018:+	0	+
#Deleted in new
chr3	3127060	3127289	ENSG00000072756.16|TRNT1|pc|chr3:3127060:3127289:+	0	+
#Deleted in new
chr3	3127945	3128018	ENSG00000072756.16|TRNT1|pc|chr3:3127945:3128018:+	0	+
#Deleted in new
chr3	3131289	3131752	ENSG00000072756.16|TRNT1|pc|chr3:3131289:3131752:+	0	+
#Deleted in new
chr3	3136675	3136797	ENSG00000072756.16|TRNT1|pc|chr3:3136675:3136797:+	0	+
#Partially deleted in new
chr3	3144627	3145499	ENSG00000113851.14|CRBN|pc|chr3:3144627:3145499:-	0	-
#Deleted in new
chr3	3145452	3145501	ENSG00000113851.14|CRBN|pc|chr3:3145452:3145501:-	0	-
#Partially deleted in new
chr3	3148991	3151045	ENSG00000113851.14|CRBN|pc|chr3:3148991:3151045:-	0	-
#Deleted in new
chr3	3149093	3149233	ENSG00000072756.16|TRNT1|pc|chr3:3149093:3149233:+	0	+
#Partially deleted in new
chr3	31619964	31620274	ENSG00000163527.9|STT3B|pc|chr3:31619964:31620274:+	0	+
#Partially deleted in new
chr3	31657889	31662116	ENSG00000144645.13|OSBPL10|pc|chr3:31657889:31662116:-	0	-
#Partially deleted in new
chr3	31704617	31704758	ENSG00000144645.13|OSBPL10|pc|chr3:31704617:31704758:-	0	-
#Deleted in new
chr3	31707191	31707420	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31707191:31707420:+	0	+
#Deleted in new
chr3	31710606	31710776	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31710606:31710776:+	0	+
#Deleted in new
chr3	31710937	31711065	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31710937:31711065:+	0	+
#Deleted in new
chr3	31713873	31714079	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31713873:31714079:+	0	+
#Deleted in new
chr3	31714619	31714912	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31714619:31714912:+	0	+
#Partially deleted in new
chr3	31718745	31718924	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31718745:31718924:+	0	+
#Deleted in new
chr3	31718778	31718924	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31718778:31718924:+	0	+
#Deleted in new
chr3	31721391	31721574	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31721391:31721574:+	0	+
#Deleted in new
chr3	31721391	31721576	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31721391:31721576:+	0	+
#Deleted in new
chr3	31721391	31721577	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31721391:31721577:+	0	+
#Deleted in new
chr3	31721391	31721580	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31721391:31721580:+	0	+
#Deleted in new
chr3	31721391	31721652	ENSG00000232490.6|OSBPL10-AS1|lncRNA|chr3:31721391:31721652:+	0	+
#Deleted in new
chr3	31797754	31797841	ENSG00000144645.13|OSBPL10|pc|chr3:31797754:31797841:-	0	-
#Deleted in new
chr3	31906847	31906996	ENSG00000144645.13|OSBPL10|pc|chr3:31906847:31906996:-	0	-
#Deleted in new
chr3	31919386	31919500	ENSG00000144645.13|OSBPL10|pc|chr3:31919386:31919500:-	0	-
#Deleted in new
chr3	31969402	31969555	ENSG00000144645.13|OSBPL10|pc|chr3:31969402:31969555:-	0	-
#Deleted in new
chr3	31988659	31988925	ENSG00000197385.5|ZNF860|pc|chr3:31988659:31988925:+	0	+
#Deleted in new
chr3	32046490	32046603	ENSG00000144645.13|OSBPL10|pc|chr3:32046490:32046603:-	0	-
#Deleted in new
chr3	32077395	32077580	ENSG00000144645.13|OSBPL10|pc|chr3:32077395:32077580:-	0	-
#Deleted in new
chr3	32105688	32105829	ENSG00000152642.10|GPD1L|pc|chr3:32105688:32105829:+	0	+
#Deleted in new
chr3	32566612	32566735	ENSG00000144635.8|DYNC1LI1|pc|chr3:32566612:32566735:-	0	-
#Deleted in new
chr3	32687730	32687736	ENSG00000182973.18|CNOT10|pc|chr3:32687730:32687736:+	0	+
#Deleted in new
chr3	32693495	32693501	ENSG00000182973.18|CNOT10|pc|chr3:32693495:32693501:+	0	+
#Partially deleted in new
chr3	32715995	32716134	ENSG00000182973.18|CNOT10|pc|chr3:32715995:32716134:+	0	+
#Deleted in new
chr3	32730634	32731044	ENSG00000251224.1|CNOT10-AS1|lncRNA|chr3:32730634:32731044:-	0	-
#Deleted in new
chr3	32765049	32765177	ENSG00000182973.18|CNOT10|pc|chr3:32765049:32765177:+	0	+
#Deleted in new
chr3	32765055	32765304	ENSG00000182973.18|CNOT10|pc|chr3:32765055:32765304:+	0	+
#Deleted in new
chr3	32769022	32769474	ENSG00000182973.18|CNOT10|pc|chr3:32769022:32769474:+	0	+
#Deleted in new
chr3	33030031	33030198	ENSG00000170266.15|GLB1|pc|chr3:33030031:33030198:-	0	-
#Deleted in new
chr3	33030141	33030196	ENSG00000170266.15|GLB1|pc|chr3:33030141:33030196:-	0	-
#Deleted in new
chr3	33030698	33030811	ENSG00000170266.15|GLB1|pc|chr3:33030698:33030811:-	0	-
#Deleted in new
chr3	33037914	33038019	ENSG00000170266.15|GLB1|pc|chr3:33037914:33038019:-	0	-
#Deleted in new
chr3	33045605	33045789	ENSG00000170266.15|GLB1|pc|chr3:33045605:33045789:-	0	-
#Deleted in new
chr3	33052664	33052791	ENSG00000170266.15|GLB1|pc|chr3:33052664:33052791:-	0	-
#Deleted in new
chr3	33061667	33061714	ENSG00000170266.15|GLB1|pc|chr3:33061667:33061714:-	0	-
#Deleted in new
chr3	33144103	33144242	ENSG00000272149.1|AC112211.1|lncRNA|chr3:33144103:33144242:-	0	-
#Deleted in new
chr3	33289649	33289795	ENSG00000153558.13|FBXL2|pc|chr3:33289649:33289795:+	0	+
#Deleted in new
chr3	33289668	33289795	ENSG00000153558.13|FBXL2|pc|chr3:33289668:33289795:+	0	+
#Deleted in new
chr3	33300521	33300571	ENSG00000153558.13|FBXL2|pc|chr3:33300521:33300571:+	0	+
#Deleted in new
chr3	33303073	33303160	ENSG00000153558.13|FBXL2|pc|chr3:33303073:33303160:+	0	+
#Deleted in new
chr3	33317476	33317613	ENSG00000153558.13|FBXL2|pc|chr3:33317476:33317613:+	0	+
#Partially deleted in new
chr3	3337299	3337463	ENSG00000223727.6|AC034195.1|lncRNA|chr3:3337299:3337463:-	0	-
#Partially deleted in new
chr3	33382551	33384201	ENSG00000153558.13|FBXL2|pc|chr3:33382551:33384201:+	0	+
#Deleted in new
chr3	33416005	33416100	ENSG00000153560.11|UBP1|pc|chr3:33416005:33416100:-	0	-
#Deleted in new
chr3	33441268	33441371	ENSG00000153560.11|UBP1|pc|chr3:33441268:33441371:-	0	-
#Partially deleted in new
chr3	33501651	33505451	ENSG00000163539.16|CLASP2|pc|chr3:33501651:33505451:-	0	-
#Deleted in new
chr3	33514579	33514679	ENSG00000163539.16|CLASP2|pc|chr3:33514579:33514679:-	0	-
#Deleted in new
chr3	33563963	33563966	ENSG00000163539.16|CLASP2|pc|chr3:33563963:33563966:-	0	-
#Deleted in new
chr3	33682978	33683604	ENSG00000163539.16|CLASP2|pc|chr3:33682978:33683604:-	0	-
#Deleted in new
chr3	33793643	33794145	ENSG00000271324.1|AC112220.3|lncRNA|chr3:33793643:33794145:-	0	-
#Deleted in new
chr3	33795687	33796950	ENSG00000271643.1|AC112220.4|lncRNA|chr3:33795687:33796950:-	0	-
#Deleted in new
chr3	33797148	33797681	ENSG00000271020.1|AC112220.2|lncRNA|chr3:33797148:33797681:-	0	-
#Partially deleted in new
chr3	33811062	33811191	ENSG00000170248.13|PDCD6IP|pc|chr3:33811062:33811191:+	0	+
#Deleted in new
chr3	33835253	33835318	ENSG00000170248.13|PDCD6IP|pc|chr3:33835253:33835318:+	0	+
#Deleted in new
chr3	34159333	34159416	ENSG00000226320.5|LINC01811|lncRNA|chr3:34159333:34159416:+	0	+
#Deleted in new
chr3	34159381	34159416	ENSG00000226320.5|LINC01811|lncRNA|chr3:34159381:34159416:+	0	+
#Deleted in new
chr3	34170844	34170920	ENSG00000226320.5|LINC01811|lncRNA|chr3:34170844:34170920:+	0	+
#Deleted in new
chr3	34268321	34268811	ENSG00000236452.1|AC123023.1|lncRNA|chr3:34268321:34268811:+	0	+
#Deleted in new
chr3	34360270	34360361	ENSG00000226320.5|LINC01811|lncRNA|chr3:34360270:34360361:+	0	+
#Deleted in new
chr3	34360804	34361061	ENSG00000226320.5|LINC01811|lncRNA|chr3:34360804:34361061:+	0	+
#Deleted in new
chr3	34386890	34387077	ENSG00000226320.5|LINC01811|lncRNA|chr3:34386890:34387077:+	0	+
#Deleted in new
chr3	3440907	3441005	ENSG00000223727.6|AC034195.1|lncRNA|chr3:3440907:3441005:-	0	-
#Deleted in new
chr3	34556587	34556702	ENSG00000226320.5|LINC01811|lncRNA|chr3:34556587:34556702:+	0	+
#Deleted in new
chr3	34562775	34562877	ENSG00000226320.5|LINC01811|lncRNA|chr3:34562775:34562877:+	0	+
#Deleted in new
chr3	3484038	3484097	ENSG00000223727.6|AC034195.1|lncRNA|chr3:3484038:3484097:-	0	-
#Deleted in new
chr3	3484038	3484115	ENSG00000223727.6|AC034195.1|lncRNA|chr3:3484038:3484115:-	0	-
#Deleted in new
chr3	35650196	35650484	ENSG00000230830.1|ARPP21-AS1|lncRNA|chr3:35650196:35650484:-	0	-
#Partially deleted in new
chr3	3626743	3626849	ENSG00000223727.6|AC034195.1|lncRNA|chr3:3626743:3626849:-	0	-
#Deleted in new
chr3	36459212	36459341	ENSG00000144681.10|STAC|pc|chr3:36459212:36459341:+	0	+
#Partially deleted in new
chr3	36712421	36715521	ENSG00000163673.7|DCLK3|pc|chr3:36712421:36715521:-	0	-
#Deleted in new
chr3	36739795	36739861	ENSG00000163673.7|DCLK3|pc|chr3:36739795:36739861:-	0	-
#Deleted in new
chr3	36821298	36821433	ENSG00000279727.1|LINC02033|lncRNA|chr3:36821298:36821433:-	0	-
#Deleted in new
chr3	36864318	36864480	ENSG00000168016.13|TRANK1|pc|chr3:36864318:36864480:-	0	-
#Deleted in new
chr3	36973116	36973672	ENSG00000272334.1|AC011816.2|lncRNA|chr3:36973116:36973672:-	0	-
#Deleted in new
chr3	36994829	36994903	ENSG00000076242.14|MLH1|pc|chr3:36994829:36994903:+	0	+
#Deleted in new
chr3	36994829	36994953	ENSG00000076242.14|MLH1|pc|chr3:36994829:36994953:+	0	+
#Partially deleted in new
chr3	37063741	37065334	ENSG00000093167.17|LRRFIP2|pc|chr3:37063741:37065334:-	0	-
#Deleted in new
chr3	37154613	37154656	ENSG00000093167.17|LRRFIP2|pc|chr3:37154613:37154656:-	0	-
#Partially deleted in new
chr3	37172769	37173026	ENSG00000093167.17|LRRFIP2|pc|chr3:37172769:37173026:-	0	-
#Partially deleted in new
chr3	37175162	37175189	ENSG00000093167.17|LRRFIP2|pc|chr3:37175162:37175189:-	0	-
#Partially deleted in new
chr3	37216778	37217988	ENSG00000271653.1|AC097359.3|lncRNA|chr3:37216778:37217988:+	0	+
#Deleted in new
chr3	37245302	37245421	ENSG00000144674.16|GOLGA4|pc|chr3:37245302:37245421:+	0	+
#Deleted in new
chr3	37287526	37287612	ENSG00000144674.16|GOLGA4|pc|chr3:37287526:37287612:+	0	+
#Deleted in new
chr3	373595	373661	ENSG00000134121.9|CHL1|pc|chr3:373595:373661:+	0	+
#Deleted in new
chr3	373816	374052	ENSG00000234661.2|CHL1-AS1|lncRNA|chr3:373816:374052:-	0	-
#Deleted in new
chr3	37386268	37386370	ENSG00000198590.11|C3orf35|pc|chr3:37386268:37386370:+	0	+
#Deleted in new
chr3	37399161	37399659	ENSG00000198590.11|C3orf35|pc|chr3:37399161:37399659:+	0	+
#Deleted in new
chr3	37399570	37399659	ENSG00000198590.11|C3orf35|pc|chr3:37399570:37399659:+	0	+
#Deleted in new
chr3	37411137	37411309	ENSG00000198590.11|C3orf35|pc|chr3:37411137:37411309:+	0	+
#Deleted in new
chr3	37411208	37411309	ENSG00000198590.11|C3orf35|pc|chr3:37411208:37411309:+	0	+
#Deleted in new
chr3	37412369	37412488	ENSG00000198590.11|C3orf35|pc|chr3:37412369:37412488:+	0	+
#Deleted in new
chr3	37434843	37435130	ENSG00000198590.11|C3orf35|pc|chr3:37434843:37435130:+	0	+
#Deleted in new
chr3	37434843	37435497	ENSG00000198590.11|C3orf35|pc|chr3:37434843:37435497:+	0	+
#Deleted in new
chr3	37434940	37435497	ENSG00000198590.11|C3orf35|pc|chr3:37434940:37435497:+	0	+
#Deleted in new
chr3	37753688	37754052	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37753688:37754052:-	0	-
#Deleted in new
chr3	37753928	37753997	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37753928:37753997:-	0	-
#Deleted in new
chr3	37753928	37754052	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37753928:37754052:-	0	-
#Deleted in new
chr3	3777724	3777803	ENSG00000144455.13|SUMF1|pc|chr3:3777724:3777803:-	0	-
#Deleted in new
chr3	3779240	3779322	ENSG00000144455.13|SUMF1|pc|chr3:3779240:3779322:-	0	-
#Partially deleted in new
chr3	37805828	37808880	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37805828:37808880:-	0	-
#Deleted in new
chr3	37808467	37808880	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37808467:37808880:-	0	-
#Deleted in new
chr3	37808494	37808880	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37808494:37808880:-	0	-
#Deleted in new
chr3	37808495	37808880	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37808495:37808880:-	0	-
#Deleted in new
chr3	37808500	37808880	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37808500:37808880:-	0	-
#Deleted in new
chr3	37808703	37808880	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37808703:37808880:-	0	-
#Deleted in new
chr3	3781351	3782701	ENSG00000144455.13|SUMF1|pc|chr3:3781351:3782701:-	0	-
#Deleted in new
chr3	37820915	37821100	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37820915:37821100:-	0	-
#Deleted in new
chr3	37821013	37821100	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37821013:37821100:-	0	-
#Deleted in new
chr3	3782502	3782701	ENSG00000144455.13|SUMF1|pc|chr3:3782502:3782701:-	0	-
#Deleted in new
chr3	3782637	3782701	ENSG00000144455.13|SUMF1|pc|chr3:3782637:3782701:-	0	-
#Partially deleted in new
chr3	37834678	37834748	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37834678:37834748:-	0	-
#Partially deleted in new
chr3	37834678	37834767	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37834678:37834767:-	0	-
#Partially deleted in new
chr3	37834678	37835071	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37834678:37835071:-	0	-
#Partially deleted in new
chr3	37834678	37835163	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37834678:37835163:-	0	-
#Deleted in new
chr3	37851423	37851450	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37851423:37851450:-	0	-
#Deleted in new
chr3	37851423	37851492	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37851423:37851492:-	0	-
#Deleted in new
chr3	37851446	37851492	ENSG00000235257.8|ITGA9-AS1|lncRNA|chr3:37851446:37851492:-	0	-
#Deleted in new
chr3	37911672	37911827	ENSG00000144677.14|CTDSPL|pc|chr3:37911672:37911827:+	0	+
#Deleted in new
chr3	37944713	37944804	ENSG00000144677.14|CTDSPL|pc|chr3:37944713:37944804:+	0	+
#Deleted in new
chr3	37954990	37955157	ENSG00000144677.14|CTDSPL|pc|chr3:37954990:37955157:+	0	+
#Deleted in new
chr3	37988058	37988238	ENSG00000136059.14|VILL|pc|chr3:37988058:37988238:+	0	+
#Deleted in new
chr3	38018969	38019034	ENSG00000187091.13|PLCD1|pc|chr3:38018969:38019034:-	0	-
#Deleted in new
chr3	38103128	38103793	ENSG00000060971.17|ACAA1|pc|chr3:38103128:38103793:-	0	-
#Partially deleted in new
chr3	38122715	38125710	ENSG00000060971.17|ACAA1|pc|chr3:38122715:38125710:-	0	-
#Deleted in new
chr3	38134508	38134552	ENSG00000060971.17|ACAA1|pc|chr3:38134508:38134552:-	0	-
#Deleted in new
chr3	38135183	38135294	ENSG00000060971.17|ACAA1|pc|chr3:38135183:38135294:-	0	-
#Partially deleted in new
chr3	38139739	38139780	ENSG00000172936.12|MYD88|pc|chr3:38139739:38139780:+	0	+
#Deleted in new
chr3	38355741	38357158	ENSG00000093217.9|XYLB|pc|chr3:38355741:38357158:+	0	+
#Deleted in new
chr3	38421212	38421348	ENSG00000093217.9|XYLB|pc|chr3:38421212:38421348:+	0	+
#Deleted in new
chr3	384322	384665	ENSG00000134121.9|CHL1|pc|chr3:384322:384665:+	0	+
#Partially deleted in new
chr3	38451026	38453225	ENSG00000229589.1|ACVR2B-AS1|lncRNA|chr3:38451026:38453225:-	0	-
#Partially deleted in new
chr3	38496737	38497689	ENSG00000157036.12|EXOG|pc|chr3:38496737:38497689:+	0	+
#Deleted in new
chr3	38496842	38496850	ENSG00000157036.12|EXOG|pc|chr3:38496842:38496850:+	0	+
#Deleted in new
chr3	38496842	38496929	ENSG00000157036.12|EXOG|pc|chr3:38496842:38496929:+	0	+
#Deleted in new
chr3	38498766	38498836	ENSG00000157036.12|EXOG|pc|chr3:38498766:38498836:+	0	+
#Deleted in new
chr3	38498925	38498989	ENSG00000157036.12|EXOG|pc|chr3:38498925:38498989:+	0	+
#Deleted in new
chr3	38499680	38499747	ENSG00000157036.12|EXOG|pc|chr3:38499680:38499747:+	0	+
#Deleted in new
chr3	38500089	38500164	ENSG00000157036.12|EXOG|pc|chr3:38500089:38500164:+	0	+
#Deleted in new
chr3	38513749	38513868	ENSG00000157036.12|EXOG|pc|chr3:38513749:38513868:+	0	+
#Deleted in new
chr3	38513772	38513851	ENSG00000157036.12|EXOG|pc|chr3:38513772:38513851:+	0	+
#Deleted in new
chr3	38524598	38524950	ENSG00000157036.12|EXOG|pc|chr3:38524598:38524950:+	0	+
#Deleted in new
chr3	385702	385795	ENSG00000234661.2|CHL1-AS1|lncRNA|chr3:385702:385795:-	0	-
#Partially deleted in new
chr3	38824271	38824522	ENSG00000231243.1|AC116038.1|lncRNA|chr3:38824271:38824522:+	0	+
#Deleted in new
chr3	39086300	39086384	ENSG00000114742.13|WDR48|pc|chr3:39086300:39086384:+	0	+
#Deleted in new
chr3	39101509	39101570	ENSG00000114745.13|GORASP1|pc|chr3:39101509:39101570:-	0	-
#Deleted in new
chr3	39106968	39107140	ENSG00000114745.13|GORASP1|pc|chr3:39106968:39107140:-	0	-
#Deleted in new
chr3	39106987	39107336	ENSG00000114745.13|GORASP1|pc|chr3:39106987:39107336:-	0	-
#Deleted in new
chr3	39106992	39107181	ENSG00000114745.13|GORASP1|pc|chr3:39106992:39107181:-	0	-
#Partially deleted in new
chr3	39118068	39119631	ENSG00000168026.18|TTC21A|pc|chr3:39118068:39119631:+	0	+
#Partially deleted in new
chr3	39118068	39119657	ENSG00000168026.18|TTC21A|pc|chr3:39118068:39119657:+	0	+
#Partially deleted in new
chr3	39118068	39119669	ENSG00000168026.18|TTC21A|pc|chr3:39118068:39119669:+	0	+
#Deleted in new
chr3	39131520	39131646	ENSG00000168026.18|TTC21A|pc|chr3:39131520:39131646:+	0	+
#Deleted in new
chr3	39169936	39170073	ENSG00000284669.1|AC092053.3|lncRNA|chr3:39169936:39170073:+	0	+
#Deleted in new
chr3	39280248	39280439	ENSG00000168329.13|CX3CR1|pc|chr3:39280248:39280439:-	0	-
#Deleted in new
chr3	39281042	39281273	ENSG00000168329.13|CX3CR1|pc|chr3:39281042:39281273:-	0	-
#Deleted in new
chr3	39499466	39499532	ENSG00000168314.17|MOBP|pc|chr3:39499466:39499532:+	0	+
#Deleted in new
chr3	39499866	39500067	ENSG00000168314.17|MOBP|pc|chr3:39499866:39500067:+	0	+
#Deleted in new
chr3	39517722	39517785	ENSG00000168314.17|MOBP|pc|chr3:39517722:39517785:+	0	+
#Deleted in new
chr3	40071115	40071221	ENSG00000170011.13|MYRIP|pc|chr3:40071115:40071221:+	0	+
#Deleted in new
chr3	40173144	40174722	ENSG00000280739.2|EIF1B-AS1|lncRNA|chr3:40173144:40174722:-	0	-
#Deleted in new
chr3	40232856	40233059	ENSG00000280739.2|EIF1B-AS1|lncRNA|chr3:40232856:40233059:-	0	-
#Deleted in new
chr3	40248183	40248471	ENSG00000280739.2|EIF1B-AS1|lncRNA|chr3:40248183:40248471:-	0	-
#Deleted in new
chr3	40289127	40291227	ENSG00000280739.2|EIF1B-AS1|lncRNA|chr3:40289127:40291227:-	0	-
#Deleted in new
chr3	40301236	40301396	ENSG00000280739.2|EIF1B-AS1|lncRNA|chr3:40301236:40301396:-	0	-
#Deleted in new
chr3	40309073	40309488	ENSG00000280739.2|EIF1B-AS1|lncRNA|chr3:40309073:40309488:-	0	-
#Deleted in new
chr3	40309322	40309461	ENSG00000280739.2|EIF1B-AS1|lncRNA|chr3:40309322:40309461:-	0	-
#Deleted in new
chr3	40309322	40309478	ENSG00000280739.2|EIF1B-AS1|lncRNA|chr3:40309322:40309478:-	0	-
#Deleted in new
chr3	40309322	40309512	ENSG00000280739.2|EIF1B-AS1|lncRNA|chr3:40309322:40309512:-	0	-
#Partially deleted in new
chr3	40309322	40309542	ENSG00000280739.2|EIF1B-AS1|lncRNA|chr3:40309322:40309542:-	0	-
#Deleted in new
chr3	40313801	40314197	ENSG00000223797.5|ENTPD3-AS1|lncRNA|chr3:40313801:40314197:-	0	-
#Partially deleted in new
chr3	40390950	40392569	ENSG00000223797.5|ENTPD3-AS1|lncRNA|chr3:40390950:40392569:-	0	-
#Deleted in new
chr3	40392453	40392569	ENSG00000223797.5|ENTPD3-AS1|lncRNA|chr3:40392453:40392569:-	0	-
#Partially deleted in new
chr3	40394308	40394431	ENSG00000168032.8|ENTPD3|pc|chr3:40394308:40394431:+	0	+
#Deleted in new
chr3	40446342	40446847	ENSG00000223797.5|ENTPD3-AS1|lncRNA|chr3:40446342:40446847:-	0	-
#Deleted in new
chr3	40451704	40451782	ENSG00000223797.5|ENTPD3-AS1|lncRNA|chr3:40451704:40451782:-	0	-
#Deleted in new
chr3	40453121	40453180	ENSG00000223797.5|ENTPD3-AS1|lncRNA|chr3:40453121:40453180:-	0	-
#Deleted in new
chr3	40453121	40453186	ENSG00000223797.5|ENTPD3-AS1|lncRNA|chr3:40453121:40453186:-	0	-
#Deleted in new
chr3	40453121	40453305	ENSG00000223797.5|ENTPD3-AS1|lncRNA|chr3:40453121:40453305:-	0	-
#Deleted in new
chr3	40453121	40453329	ENSG00000223797.5|ENTPD3-AS1|lncRNA|chr3:40453121:40453329:-	0	-
#Partially deleted in new
chr3	40461938	40468587	ENSG00000188846.13|RPL14|pc|chr3:40461938:40468587:+	0	+
#Deleted in new
chr3	40477112	40477357	ENSG00000177873.12|ZNF619|pc|chr3:40477112:40477357:+	0	+
#Deleted in new
chr3	40477141	40477357	ENSG00000177873.12|ZNF619|pc|chr3:40477141:40477357:+	0	+
#Deleted in new
chr3	40477183	40477357	ENSG00000177873.12|ZNF619|pc|chr3:40477183:40477357:+	0	+
#Deleted in new
chr3	40477769	40478003	ENSG00000177873.12|ZNF619|pc|chr3:40477769:40478003:+	0	+
#Deleted in new
chr3	40477917	40478003	ENSG00000177873.12|ZNF619|pc|chr3:40477917:40478003:+	0	+
#Deleted in new
chr3	40477979	40478003	ENSG00000177873.12|ZNF619|pc|chr3:40477979:40478003:+	0	+
#Deleted in new
chr3	40483652	40483723	ENSG00000177873.12|ZNF619|pc|chr3:40483652:40483723:+	0	+
#Deleted in new
chr3	40483673	40483723	ENSG00000177873.12|ZNF619|pc|chr3:40483673:40483723:+	0	+
#Split in new
chr3	40486805	40490236	ENSG00000177873.12|ZNF619|pc|chr3:40486805:40490236:+	0	+
#Deleted in new
chr3	40505991	40506125	ENSG00000177842.11|ZNF620|pc|chr3:40505991:40506125:+	0	+
#Deleted in new
chr3	40506038	40506138	ENSG00000177842.11|ZNF620|pc|chr3:40506038:40506138:+	0	+
#Deleted in new
chr3	40506039	40506138	ENSG00000177842.11|ZNF620|pc|chr3:40506039:40506138:+	0	+
#Deleted in new
chr3	40506107	40506138	ENSG00000177842.11|ZNF620|pc|chr3:40506107:40506138:+	0	+
#Deleted in new
chr3	40506303	40506376	ENSG00000177842.11|ZNF620|pc|chr3:40506303:40506376:+	0	+
#Deleted in new
chr3	40508655	40508774	ENSG00000177842.11|ZNF620|pc|chr3:40508655:40508774:+	0	+
#Deleted in new
chr3	40515859	40515944	ENSG00000177842.11|ZNF620|pc|chr3:40515859:40515944:+	0	+
#Split in new
chr3	40515859	40518736	ENSG00000177842.11|ZNF620|pc|chr3:40515859:40518736:+	0	+
#Deleted in new
chr3	40524877	40525038	ENSG00000172888.11|ZNF621|pc|chr3:40524877:40525038:+	0	+
#Deleted in new
chr3	40524877	40525274	ENSG00000172888.11|ZNF621|pc|chr3:40524877:40525274:+	0	+
#Deleted in new
chr3	40524884	40525274	ENSG00000172888.11|ZNF621|pc|chr3:40524884:40525274:+	0	+
#Deleted in new
chr3	40524897	40525274	ENSG00000172888.11|ZNF621|pc|chr3:40524897:40525274:+	0	+
#Deleted in new
chr3	40524982	40525274	ENSG00000172888.11|ZNF621|pc|chr3:40524982:40525274:+	0	+
#Deleted in new
chr3	40525005	40525038	ENSG00000172888.11|ZNF621|pc|chr3:40525005:40525038:+	0	+
#Deleted in new
chr3	40525415	40525460	ENSG00000172888.11|ZNF621|pc|chr3:40525415:40525460:+	0	+
#Deleted in new
chr3	40525778	40525864	ENSG00000172888.11|ZNF621|pc|chr3:40525778:40525864:+	0	+
#Split in new
chr3	40532029	40537696	ENSG00000172888.11|ZNF621|pc|chr3:40532029:40537696:+	0	+
#Deleted in new
chr3	40538285	40539794	ENSG00000172888.11|ZNF621|pc|chr3:40538285:40539794:+	0	+
#Partially deleted in new
chr3	40574382	40574685	ENSG00000172888.11|ZNF621|pc|chr3:40574382:40574685:+	0	+
#Deleted in new
chr3	40603124	40603216	ENSG00000226302.1|AC122683.1|lncRNA|chr3:40603124:40603216:-	0	-
#Deleted in new
chr3	40604802	40605427	ENSG00000226302.1|AC122683.1|lncRNA|chr3:40604802:40605427:-	0	-
#Deleted in new
chr3	4068568	4068745	ENSG00000144455.13|SUMF1|pc|chr3:4068568:4068745:-	0	-
#Deleted in new
chr3	40766206	40766352	ENSG00000231873.1|AC099560.1|lncRNA|chr3:40766206:40766352:+	0	+
#Deleted in new
chr3	40773867	40773986	ENSG00000231873.1|AC099560.1|lncRNA|chr3:40773867:40773986:+	0	+
#Deleted in new
chr3	40862391	40862626	ENSG00000231873.1|AC099560.1|lncRNA|chr3:40862391:40862626:+	0	+
#Deleted in new
chr3	41166077	41166245	ENSG00000233919.1|AC009743.1|lncRNA|chr3:41166077:41166245:-	0	-
#Partially deleted in new
chr3	41236587	41237218	ENSG00000168036.16|CTNNB1|pc|chr3:41236587:41237218:+	0	+
#Deleted in new
chr3	41250922	41251124	ENSG00000168038.10|ULK4|pc|chr3:41250922:41251124:-	0	-
#Deleted in new
chr3	41258331	41258484	ENSG00000168036.16|CTNNB1|pc|chr3:41258331:41258484:+	0	+
#Deleted in new
chr3	41277805	41278151	ENSG00000168038.10|ULK4|pc|chr3:41277805:41278151:-	0	-
#Deleted in new
chr3	41854081	41854176	ENSG00000168038.10|ULK4|pc|chr3:41854081:41854176:-	0	-
#Deleted in new
chr3	41854869	41854911	ENSG00000168038.10|ULK4|pc|chr3:41854869:41854911:-	0	-
#Deleted in new
chr3	41882149	41882280	ENSG00000168038.10|ULK4|pc|chr3:41882149:41882280:-	0	-
#Partially deleted in new
chr3	41912806	41913204	ENSG00000168038.10|ULK4|pc|chr3:41912806:41913204:-	0	-
#Deleted in new
chr3	41914756	41914853	ENSG00000168038.10|ULK4|pc|chr3:41914756:41914853:-	0	-
#Deleted in new
chr3	41915381	41915474	ENSG00000168038.10|ULK4|pc|chr3:41915381:41915474:-	0	-
#Deleted in new
chr3	41937094	41937340	ENSG00000168038.10|ULK4|pc|chr3:41937094:41937340:-	0	-
#Deleted in new
chr3	41937228	41937340	ENSG00000168038.10|ULK4|pc|chr3:41937228:41937340:-	0	-
#Deleted in new
chr3	41937294	41937340	ENSG00000168038.10|ULK4|pc|chr3:41937294:41937340:-	0	-
#Deleted in new
chr3	41961925	41961994	ENSG00000168038.10|ULK4|pc|chr3:41961925:41961994:-	0	-
#Deleted in new
chr3	41962015	41962055	ENSG00000168038.10|ULK4|pc|chr3:41962015:41962055:-	0	-
#Deleted in new
chr3	41962015	41962077	ENSG00000168038.10|ULK4|pc|chr3:41962015:41962077:-	0	-
#Deleted in new
chr3	41962015	41962102	ENSG00000168038.10|ULK4|pc|chr3:41962015:41962102:-	0	-
#Deleted in new
chr3	41962015	41962115	ENSG00000168038.10|ULK4|pc|chr3:41962015:41962115:-	0	-
#Deleted in new
chr3	41962015	41962130	ENSG00000168038.10|ULK4|pc|chr3:41962015:41962130:-	0	-
#Deleted in new
chr3	42407399	42407508	ENSG00000157093.8|LYZL4|pc|chr3:42407399:42407508:-	0	-
#Deleted in new
chr3	42489298	42489678	ENSG00000114812.12|VIPR1|pc|chr3:42489298:42489678:+	0	+
#Deleted in new
chr3	42489479	42489678	ENSG00000114812.12|VIPR1|pc|chr3:42489479:42489678:+	0	+
#Deleted in new
chr3	42489482	42489678	ENSG00000114812.12|VIPR1|pc|chr3:42489482:42489678:+	0	+
#Deleted in new
chr3	42489493	42489678	ENSG00000114812.12|VIPR1|pc|chr3:42489493:42489678:+	0	+
#Partially deleted in new
chr3	42506464	42506842	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42506464:42506842:-	0	-
#Partially deleted in new
chr3	42506522	42506842	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42506522:42506842:-	0	-
#Partially deleted in new
chr3	42506523	42506842	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42506523:42506842:-	0	-
#Partially deleted in new
chr3	42506527	42506842	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42506527:42506842:-	0	-
#Partially deleted in new
chr3	42506546	42506842	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42506546:42506842:-	0	-
#Partially deleted in new
chr3	42506548	42506842	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42506548:42506842:-	0	-
#Deleted in new
chr3	42506656	42506690	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42506656:42506690:-	0	-
#Deleted in new
chr3	42508811	42508935	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42508811:42508935:-	0	-
#Deleted in new
chr3	42509182	42509350	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42509182:42509350:-	0	-
#Deleted in new
chr3	42509184	42509371	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42509184:42509371:-	0	-
#Deleted in new
chr3	42509200	42509371	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42509200:42509371:-	0	-
#Deleted in new
chr3	42509304	42509379	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42509304:42509379:-	0	-
#Deleted in new
chr3	42509724	42509755	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42509724:42509755:-	0	-
#Deleted in new
chr3	42529339	42529461	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42529339:42529461:-	0	-
#Partially deleted in new
chr3	42530121	42530602	ENSG00000232354.8|VIPR1-AS1|lncRNA|chr3:42530121:42530602:-	0	-
#Deleted in new
chr3	42563764	42563880	ENSG00000093183.13|SEC22C|pc|chr3:42563764:42563880:-	0	-
#Deleted in new
chr3	42563764	42563980	ENSG00000093183.13|SEC22C|pc|chr3:42563764:42563980:-	0	-
#Deleted in new
chr3	42563764	42564415	ENSG00000093183.13|SEC22C|pc|chr3:42563764:42564415:-	0	-
#Deleted in new
chr3	42563844	42563888	ENSG00000093183.13|SEC22C|pc|chr3:42563844:42563888:-	0	-
#Deleted in new
chr3	42563926	42563980	ENSG00000093183.13|SEC22C|pc|chr3:42563926:42563980:-	0	-
#Deleted in new
chr3	42565775	42565883	ENSG00000093183.13|SEC22C|pc|chr3:42565775:42565883:-	0	-
#Deleted in new
chr3	42566743	42566836	ENSG00000093183.13|SEC22C|pc|chr3:42566743:42566836:-	0	-
#Deleted in new
chr3	42573399	42573547	ENSG00000093183.13|SEC22C|pc|chr3:42573399:42573547:-	0	-
#Deleted in new
chr3	42579476	42579593	ENSG00000093183.13|SEC22C|pc|chr3:42579476:42579593:-	0	-
#Deleted in new
chr3	42581311	42581365	ENSG00000093183.13|SEC22C|pc|chr3:42581311:42581365:-	0	-
#Deleted in new
chr3	42587410	42587562	ENSG00000093183.13|SEC22C|pc|chr3:42587410:42587562:-	0	-
#Partially deleted in new
chr3	42591273	42591601	ENSG00000008324.11|SS18L2|pc|chr3:42591273:42591601:+	0	+
#Deleted in new
chr3	42600410	42600524	ENSG00000093183.13|SEC22C|pc|chr3:42600410:42600524:-	0	-
#Partially deleted in new
chr3	42600983	42603056	ENSG00000114857.17|NKTR|pc|chr3:42600983:42603056:+	0	+
#Deleted in new
chr3	42601962	42602097	ENSG00000230084.5|AC006059.1|lncRNA|chr3:42601962:42602097:-	0	-
#Deleted in new
chr3	42611102	42611184	ENSG00000114857.17|NKTR|pc|chr3:42611102:42611184:+	0	+
#Deleted in new
chr3	42612289	42612367	ENSG00000230084.5|AC006059.1|lncRNA|chr3:42612289:42612367:-	0	-
#Deleted in new
chr3	42612291	42612367	ENSG00000230084.5|AC006059.1|lncRNA|chr3:42612291:42612367:-	0	-
#Partially deleted in new
chr3	42706046	42706776	ENSG00000230970.3|HHATL-AS1|lncRNA|chr3:42706046:42706776:+	0	+
#Deleted in new
chr3	42717967	42718137	ENSG00000244607.5|CCDC13|pc|chr3:42717967:42718137:-	0	-
#Deleted in new
chr3	42718984	42719163	ENSG00000244607.5|CCDC13|pc|chr3:42718984:42719163:-	0	-
#Deleted in new
chr3	42719277	42719525	ENSG00000244607.5|CCDC13|pc|chr3:42719277:42719525:-	0	-
#Deleted in new
chr3	42740974	42741087	ENSG00000173811.10|CCDC13-AS1|lncRNA|chr3:42740974:42741087:+	0	+
#Deleted in new
chr3	42770611	42771077	ENSG00000225611.1|LINC02158|lncRNA|chr3:42770611:42771077:+	0	+
#Deleted in new
chr3	42804939	42805637	ENSG00000235288.3|AC099329.1|lncRNA|chr3:42804939:42805637:-	0	-
#Deleted in new
chr3	42805264	42805653	ENSG00000144648.15|ACKR2|pc|chr3:42805264:42805653:+	0	+
#Deleted in new
chr3	42809175	42809308	ENSG00000144648.15|ACKR2|pc|chr3:42809175:42809308:+	0	+
#Deleted in new
chr3	42809413	42809532	ENSG00000273328.5|AC099329.2|lncRNA|chr3:42809413:42809532:+	0	+
#Deleted in new
chr3	42809429	42809532	ENSG00000144648.15|ACKR2|pc|chr3:42809429:42809532:+	0	+
#Deleted in new
chr3	42809444	42809532	ENSG00000273328.5|AC099329.2|lncRNA|chr3:42809444:42809532:+	0	+
#Deleted in new
chr3	42809445	42809532	ENSG00000273291.5|AC092042.3|pc|chr3:42809445:42809532:+	0	+
#Deleted in new
chr3	42809455	42809532	ENSG00000144648.15|ACKR2|pc|chr3:42809455:42809532:+	0	+
#Deleted in new
chr3	42809461	42809532	ENSG00000144648.15|ACKR2|pc|chr3:42809461:42809532:+	0	+
#Deleted in new
chr3	42809471	42809532	ENSG00000144648.15|ACKR2|pc|chr3:42809471:42809532:+	0	+
#Deleted in new
chr3	42809471	42809532	ENSG00000273328.5|AC099329.2|lncRNA|chr3:42809471:42809532:+	0	+
#Deleted in new
chr3	42809472	42809532	ENSG00000144648.15|ACKR2|pc|chr3:42809472:42809532:+	0	+
#Deleted in new
chr3	42809475	42809532	ENSG00000144648.15|ACKR2|pc|chr3:42809475:42809532:+	0	+
#Deleted in new
chr3	42809482	42809532	ENSG00000240747.7|KRBOX1|pc|chr3:42809482:42809532:+	0	+
#Deleted in new
chr3	42809491	42809532	ENSG00000144648.15|ACKR2|pc|chr3:42809491:42809532:+	0	+
#Deleted in new
chr3	42834599	42834720	ENSG00000144648.15|ACKR2|pc|chr3:42834599:42834720:+	0	+
#Partially deleted in new
chr3	42835243	42835959	ENSG00000235288.3|AC099329.1|lncRNA|chr3:42835243:42835959:-	0	-
#Deleted in new
chr3	42835448	42835773	ENSG00000144648.15|ACKR2|pc|chr3:42835448:42835773:+	0	+
#Deleted in new
chr3	42839093	42839279	ENSG00000144648.15|ACKR2|pc|chr3:42839093:42839279:+	0	+
#Deleted in new
chr3	42839093	42839279	ENSG00000273328.5|AC099329.2|lncRNA|chr3:42839093:42839279:+	0	+
#Deleted in new
chr3	42841537	42841770	ENSG00000144648.15|ACKR2|pc|chr3:42841537:42841770:+	0	+
#Deleted in new
chr3	42843918	42843987	ENSG00000144648.15|ACKR2|pc|chr3:42843918:42843987:+	0	+
#Deleted in new
chr3	42843963	42844065	ENSG00000144648.15|ACKR2|pc|chr3:42843963:42844065:+	0	+
#Deleted in new
chr3	42852374	42852425	ENSG00000235288.3|AC099329.1|lncRNA|chr3:42852374:42852425:-	0	-
#Deleted in new
chr3	42852374	42852428	ENSG00000235288.3|AC099329.1|lncRNA|chr3:42852374:42852428:-	0	-
#Deleted in new
chr3	42887537	42887640	ENSG00000144648.15|ACKR2|pc|chr3:42887537:42887640:+	0	+
#Deleted in new
chr3	42887537	42887701	ENSG00000273328.5|AC099329.2|lncRNA|chr3:42887537:42887701:+	0	+
#Deleted in new
chr3	42887537	42887974	ENSG00000144648.15|ACKR2|pc|chr3:42887537:42887974:+	0	+
#Deleted in new
chr3	42897037	42897324	ENSG00000273328.5|AC099329.2|lncRNA|chr3:42897037:42897324:+	0	+
#Deleted in new
chr3	42897037	42900336	ENSG00000273328.5|AC099329.2|lncRNA|chr3:42897037:42900336:+	0	+
#Deleted in new
chr3	42905730	42906168	ENSG00000182983.14|ZNF662|pc|chr3:42905730:42906168:+	0	+
#Deleted in new
chr3	42906165	42906441	ENSG00000182983.14|ZNF662|pc|chr3:42906165:42906441:+	0	+
#Deleted in new
chr3	42906173	42906441	ENSG00000182983.14|ZNF662|pc|chr3:42906173:42906441:+	0	+
#Deleted in new
chr3	42912016	42912069	ENSG00000182983.14|ZNF662|pc|chr3:42912016:42912069:+	0	+
#Deleted in new
chr3	42913200	42913302	ENSG00000182983.14|ZNF662|pc|chr3:42913200:42913302:+	0	+
#Deleted in new
chr3	42913200	42913303	ENSG00000182983.14|ZNF662|pc|chr3:42913200:42913303:+	0	+
#Split in new
chr3	42914326	42916995	ENSG00000182983.14|ZNF662|pc|chr3:42914326:42916995:+	0	+
#Split in new
chr3	42914326	42917641	ENSG00000182983.14|ZNF662|pc|chr3:42914326:42917641:+	0	+
#Deleted in new
chr3	42917448	42917640	ENSG00000182983.14|ZNF662|pc|chr3:42917448:42917640:+	0	+
#Deleted in new
chr3	42934251	42935356	ENSG00000206552.4|KRBOX1-AS1|lncRNA|chr3:42934251:42935356:-	0	-
#Split in new
chr3	42935756	42936785	ENSG00000206552.4|KRBOX1-AS1|lncRNA|chr3:42935756:42936785:-	0	-
#Deleted in new
chr3	42936858	42937063	ENSG00000273291.5|AC092042.3|pc|chr3:42936858:42937063:+	0	+
#Partially deleted in new
chr3	43053520	43054274	ENSG00000144649.8|FAM198A|pc|chr3:43053520:43054274:+	0	+
#Deleted in new
chr3	43059833	43060211	ENSG00000144649.8|FAM198A|pc|chr3:43059833:43060211:+	0	+
#Deleted in new
chr3	43087478	43087730	ENSG00000227245.1|AC092042.1|lncRNA|chr3:43087478:43087730:+	0	+
#Deleted in new
chr3	43087811	43088068	ENSG00000227245.1|AC092042.1|lncRNA|chr3:43087811:43088068:+	0	+
#Deleted in new
chr3	43090487	43090609	ENSG00000144647.5|POMGNT2|pc|chr3:43090487:43090609:-	0	-
#Deleted in new
chr3	4316211	4316412	ENSG00000170364.12|SETMAR|pc|chr3:4316211:4316412:+	0	+
#Deleted in new
chr3	4316211	4316536	ENSG00000170364.12|SETMAR|pc|chr3:4316211:4316536:+	0	+
#Deleted in new
chr3	4316211	4317265	ENSG00000170364.12|SETMAR|pc|chr3:4316211:4317265:+	0	+
#Deleted in new
chr3	4316211	4317567	ENSG00000170364.12|SETMAR|pc|chr3:4316211:4317567:+	0	+
#Deleted in new
chr3	43351597	43351962	ENSG00000234617.1|SNRK-AS1|lncRNA|chr3:43351597:43351962:-	0	-
#Deleted in new
chr3	43354858	43355056	ENSG00000160746.12|ANO10|pc|chr3:43354858:43355056:-	0	-
#Deleted in new
chr3	43361766	43361868	ENSG00000163788.13|SNRK|pc|chr3:43361766:43361868:+	0	+
#Deleted in new
chr3	43372727	43372847	ENSG00000160746.12|ANO10|pc|chr3:43372727:43372847:-	0	-
#Deleted in new
chr3	43424524	43424764	ENSG00000163788.13|SNRK|pc|chr3:43424524:43424764:+	0	+
#Deleted in new
chr3	43551471	43551588	ENSG00000160746.12|ANO10|pc|chr3:43551471:43551588:-	0	-
#Deleted in new
chr3	43618019	43618086	ENSG00000160746.12|ANO10|pc|chr3:43618019:43618086:-	0	-
#Partially deleted in new
chr3	43621772	43621897	ENSG00000160746.12|ANO10|pc|chr3:43621772:43621897:-	0	-
#Deleted in new
chr3	43636308	43636538	ENSG00000160746.12|ANO10|pc|chr3:43636308:43636538:-	0	-
#Deleted in new
chr3	43637602	43637783	ENSG00000160746.12|ANO10|pc|chr3:43637602:43637783:-	0	-
#Deleted in new
chr3	43652946	43653037	ENSG00000160746.12|ANO10|pc|chr3:43652946:43653037:-	0	-
#Deleted in new
chr3	43652946	43653040	ENSG00000160746.12|ANO10|pc|chr3:43652946:43653040:-	0	-
#Deleted in new
chr3	43689310	43689476	ENSG00000160746.12|ANO10|pc|chr3:43689310:43689476:-	0	-
#Deleted in new
chr3	43690112	43690202	ENSG00000011198.7|ABHD5|pc|chr3:43690112:43690202:+	0	+
#Deleted in new
chr3	43734049	43734371	ENSG00000011198.7|ABHD5|pc|chr3:43734049:43734371:+	0	+
#Deleted in new
chr3	43779594	43779717	ENSG00000235886.1|AC006055.1|lncRNA|chr3:43779594:43779717:-	0	-
#Partially deleted in new
chr3	43779871	43779982	ENSG00000235886.1|AC006055.1|lncRNA|chr3:43779871:43779982:-	0	-
#Partially deleted in new
chr3	44338451	44338834	ENSG00000179152.19|TCAIM|pc|chr3:44338451:44338834:+	0	+
#Deleted in new
chr3	44338751	44338834	ENSG00000179152.19|TCAIM|pc|chr3:44338751:44338834:+	0	+
#Deleted in new
chr3	44338756	44338834	ENSG00000179152.19|TCAIM|pc|chr3:44338756:44338834:+	0	+
#Deleted in new
chr3	44338759	44338834	ENSG00000179152.19|TCAIM|pc|chr3:44338759:44338834:+	0	+
#Deleted in new
chr3	44338775	44338834	ENSG00000179152.19|TCAIM|pc|chr3:44338775:44338834:+	0	+
#Deleted in new
chr3	44338782	44338834	ENSG00000179152.19|TCAIM|pc|chr3:44338782:44338834:+	0	+
#Deleted in new
chr3	44338805	44338834	ENSG00000179152.19|TCAIM|pc|chr3:44338805:44338834:+	0	+
#Partially deleted in new
chr3	44339686	44341425	ENSG00000179152.19|TCAIM|pc|chr3:44339686:44341425:+	0	+
#Deleted in new
chr3	44358216	44359802	ENSG00000179152.19|TCAIM|pc|chr3:44358216:44359802:+	0	+
#Deleted in new
chr3	44358216	44359804	ENSG00000179152.19|TCAIM|pc|chr3:44358216:44359804:+	0	+
#Deleted in new
chr3	44362419	44363037	ENSG00000179152.19|TCAIM|pc|chr3:44362419:44363037:+	0	+
#Deleted in new
chr3	44391207	44391331	ENSG00000179152.19|TCAIM|pc|chr3:44391207:44391331:+	0	+
#Deleted in new
chr3	44422852	44422937	ENSG00000225873.3|LINC00694|pc|chr3:44422852:44422937:-	0	-
#Deleted in new
chr3	44427976	44428158	ENSG00000283036.2|LINC01988|lncRNA|chr3:44427976:44428158:+	0	+
#Deleted in new
chr3	44428044	44428158	ENSG00000283036.2|LINC01988|lncRNA|chr3:44428044:44428158:+	0	+
#Deleted in new
chr3	44428554	44428624	ENSG00000283036.2|LINC01988|lncRNA|chr3:44428554:44428624:+	0	+
#Deleted in new
chr3	44428846	44428941	ENSG00000283036.2|LINC01988|lncRNA|chr3:44428846:44428941:+	0	+
#Deleted in new
chr3	44428930	44429097	ENSG00000225873.3|LINC00694|pc|chr3:44428930:44429097:-	0	-
#Deleted in new
chr3	44429065	44429528	ENSG00000283036.2|LINC01988|lncRNA|chr3:44429065:44429528:+	0	+
#Deleted in new
chr3	44429065	44429529	ENSG00000283036.2|LINC01988|lncRNA|chr3:44429065:44429529:+	0	+
#Partially deleted in new
chr3	44431719	44448739	ENSG00000185219.16|ZNF445|pc|chr3:44431719:44448739:-	0	-
#Deleted in new
chr3	44437697	44437767	ENSG00000225873.3|LINC00694|pc|chr3:44437697:44437767:-	0	-
#Deleted in new
chr3	44439796	44439917	ENSG00000225873.3|LINC00694|pc|chr3:44439796:44439917:-	0	-
#Deleted in new
chr3	44439796	44439946	ENSG00000225873.3|LINC00694|pc|chr3:44439796:44439946:-	0	-
#Deleted in new
chr3	44458243	44458264	ENSG00000185219.16|ZNF445|pc|chr3:44458243:44458264:-	0	-
#Deleted in new
chr3	44458243	44458364	ENSG00000185219.16|ZNF445|pc|chr3:44458243:44458364:-	0	-
#Deleted in new
chr3	44477590	44477649	ENSG00000185219.16|ZNF445|pc|chr3:44477590:44477649:-	0	-
#Deleted in new
chr3	44477590	44477670	ENSG00000185219.16|ZNF445|pc|chr3:44477590:44477670:-	0	-
#Deleted in new
chr3	44510552	44510636	ENSG00000178917.15|ZNF852|pc|chr3:44510552:44510636:-	0	-
#Deleted in new
chr3	44582971	44583306	ENSG00000196345.12|ZKSCAN7|pc|chr3:44582971:44583306:+	0	+
#Deleted in new
chr3	44582971	44583445	ENSG00000196345.12|ZKSCAN7|pc|chr3:44582971:44583445:+	0	+
#Deleted in new
chr3	44582971	44583483	ENSG00000196345.12|ZKSCAN7|pc|chr3:44582971:44583483:+	0	+
#Deleted in new
chr3	44584961	44585007	ENSG00000144792.9|ZNF660|pc|chr3:44584961:44585007:+	0	+
#Deleted in new
chr3	44584963	44585007	ENSG00000144792.9|ZNF660|pc|chr3:44584963:44585007:+	0	+
#Deleted in new
chr3	44587129	44587250	ENSG00000144792.9|ZNF660|pc|chr3:44587129:44587250:+	0	+
#Deleted in new
chr3	44617127	44617674	ENSG00000233509.2|ZNF197-AS1|lncRNA|chr3:44617127:44617674:-	0	-
#Deleted in new
chr3	44624721	44624797	ENSG00000233509.2|ZNF197-AS1|lncRNA|chr3:44624721:44624797:-	0	-
#Deleted in new
chr3	44625018	44625143	ENSG00000186448.14|ZNF197|pc|chr3:44625018:44625143:+	0	+
#Deleted in new
chr3	44625039	44625143	ENSG00000186448.14|ZNF197|pc|chr3:44625039:44625143:+	0	+
#Deleted in new
chr3	44625048	44625143	ENSG00000186448.14|ZNF197|pc|chr3:44625048:44625143:+	0	+
#Deleted in new
chr3	44625094	44625143	ENSG00000186448.14|ZNF197|pc|chr3:44625094:44625143:+	0	+
#Deleted in new
chr3	44630813	44630946	ENSG00000186448.14|ZNF197|pc|chr3:44630813:44630946:+	0	+
#Deleted in new
chr3	44631061	44631221	ENSG00000186448.14|ZNF197|pc|chr3:44631061:44631221:+	0	+
#Deleted in new
chr3	44646490	44647504	ENSG00000186448.14|ZNF197|pc|chr3:44646490:44647504:+	0	+
#Deleted in new
chr3	44646490	44647778	ENSG00000186448.14|ZNF197|pc|chr3:44646490:44647778:+	0	+
#Partially deleted in new
chr3	44646490	44648471	ENSG00000186448.14|ZNF197|pc|chr3:44646490:44648471:+	0	+
#Deleted in new
chr3	44661261	44661386	ENSG00000236869.1|AC099669.1|lncRNA|chr3:44661261:44661386:-	0	-
#Deleted in new
chr3	44667411	44669364	ENSG00000272077.1|AC124045.1|lncRNA|chr3:44667411:44669364:+	0	+
#Deleted in new
chr3	44685558	44685653	ENSG00000236869.1|AC099669.1|lncRNA|chr3:44685558:44685653:-	0	-
#Deleted in new
chr3	44712642	44712744	ENSG00000196653.11|ZNF502|pc|chr3:44712642:44712744:+	0	+
#Deleted in new
chr3	44712645	44712740	ENSG00000196653.11|ZNF502|pc|chr3:44712645:44712740:+	0	+
#Deleted in new
chr3	44712645	44712744	ENSG00000196653.11|ZNF502|pc|chr3:44712645:44712744:+	0	+
#Deleted in new
chr3	44712675	44712744	ENSG00000196653.11|ZNF502|pc|chr3:44712675:44712744:+	0	+
#Deleted in new
chr3	44714590	44714688	ENSG00000196653.11|ZNF502|pc|chr3:44714590:44714688:+	0	+
#Deleted in new
chr3	44729595	44729722	ENSG00000186446.11|ZNF501|pc|chr3:44729595:44729722:+	0	+
#Deleted in new
chr3	44729605	44730015	ENSG00000186446.11|ZNF501|pc|chr3:44729605:44730015:+	0	+
#Deleted in new
chr3	44729623	44729722	ENSG00000186446.11|ZNF501|pc|chr3:44729623:44729722:+	0	+
#Deleted in new
chr3	44729630	44730015	ENSG00000186446.11|ZNF501|pc|chr3:44729630:44730015:+	0	+
#Deleted in new
chr3	44729780	44730015	ENSG00000186446.11|ZNF501|pc|chr3:44729780:44730015:+	0	+
#Deleted in new
chr3	44731475	44731560	ENSG00000186446.11|ZNF501|pc|chr3:44731475:44731560:+	0	+
#Deleted in new
chr3	44731475	44731919	ENSG00000186446.11|ZNF501|pc|chr3:44731475:44731919:+	0	+
#Deleted in new
chr3	44732106	44732265	ENSG00000186446.11|ZNF501|pc|chr3:44732106:44732265:+	0	+
#Deleted in new
chr3	44734196	44734299	ENSG00000186446.11|ZNF501|pc|chr3:44734196:44734299:+	0	+
#Partially deleted in new
chr3	44734196	44737083	ENSG00000186446.11|ZNF501|pc|chr3:44734196:44737083:+	0	+
#Deleted in new
chr3	44737660	44737797	ENSG00000163807.5|KIAA1143|pc|chr3:44737660:44737797:-	0	-
#Partially deleted in new
chr3	44748743	44753552	ENSG00000163807.5|KIAA1143|pc|chr3:44748743:44753552:-	0	-
#Partially deleted in new
chr3	44861903	44864343	ENSG00000169964.7|TMEM42|pc|chr3:44861903:44864343:+	0	+
#Deleted in new
chr3	44876428	44876490	ENSG00000163810.11|TGM4|pc|chr3:44876428:44876490:+	0	+
#Deleted in new
chr3	44899177	44899649	ENSG00000235845.1|AC098649.1|lncRNA|chr3:44899177:44899649:+	0	+
#Deleted in new
chr3	44900828	44900925	ENSG00000235845.1|AC098649.1|lncRNA|chr3:44900828:44900925:+	0	+
#Deleted in new
chr3	44969608	44969931	ENSG00000163812.13|ZDHHC3|pc|chr3:44969608:44969931:-	0	-
#Partially deleted in new
chr3	45001537	45002239	ENSG00000075914.12|EXOSC7|pc|chr3:45001537:45002239:+	0	+
#Partially deleted in new
chr3	45004159	45005414	ENSG00000075914.12|EXOSC7|pc|chr3:45004159:45005414:+	0	+
#Deleted in new
chr3	45483973	45484031	ENSG00000232455.2|LARS2-AS1|lncRNA|chr3:45483973:45484031:-	0	-
#Deleted in new
chr3	45495243	45495500	ENSG00000232455.2|LARS2-AS1|lncRNA|chr3:45495243:45495500:-	0	-
#Deleted in new
chr3	45506911	45506982	ENSG00000232455.2|LARS2-AS1|lncRNA|chr3:45506911:45506982:-	0	-
#Deleted in new
chr3	45509356	45509545	ENSG00000232455.2|LARS2-AS1|lncRNA|chr3:45509356:45509545:-	0	-
#Deleted in new
chr3	45519692	45519790	ENSG00000011376.9|LARS2|pc|chr3:45519692:45519790:+	0	+
#Partially deleted in new
chr3	45547350	45548837	ENSG00000011376.9|LARS2|pc|chr3:45547350:45548837:+	0	+
#Partially deleted in new
chr3	45547350	45549421	ENSG00000011376.9|LARS2|pc|chr3:45547350:45549421:+	0	+
#Deleted in new
chr3	45555393	45555494	ENSG00000144791.9|LIMD1|pc|chr3:45555393:45555494:+	0	+
#Deleted in new
chr3	45612891	45612981	ENSG00000144791.9|LIMD1|pc|chr3:45612891:45612981:+	0	+
#Deleted in new
chr3	45634956	45635024	ENSG00000144791.9|LIMD1|pc|chr3:45634956:45635024:+	0	+
#Partially deleted in new
chr3	45713195	45714079	ENSG00000211456.10|SACM1L|pc|chr3:45713195:45714079:+	0	+
#Partially deleted in new
chr3	45739586	45739907	ENSG00000211456.10|SACM1L|pc|chr3:45739586:45739907:+	0	+
#Deleted in new
chr3	45749626	45750651	ENSG00000279017.1|AC098476.1|lncRNA|chr3:45749626:45750651:+	0	+
#Deleted in new
chr3	45791632	45791728	ENSG00000163817.15|SLC6A20|pc|chr3:45791632:45791728:-	0	-
#Deleted in new
chr3	45841694	45841860	ENSG00000163818.16|LZTFL1|pc|chr3:45841694:45841860:-	0	-
#Deleted in new
chr3	45854410	45854537	ENSG00000163818.16|LZTFL1|pc|chr3:45854410:45854537:-	0	-
#Deleted in new
chr3	45858939	45859016	ENSG00000163818.16|LZTFL1|pc|chr3:45858939:45859016:-	0	-
#Deleted in new
chr3	45897560	45897646	ENSG00000173585.15|CCR9|pc|chr3:45897560:45897646:+	0	+
#Deleted in new
chr3	45913119	45913177	ENSG00000163818.16|LZTFL1|pc|chr3:45913119:45913177:-	0	-
#Deleted in new
chr3	45915420	45915643	ENSG00000163818.16|LZTFL1|pc|chr3:45915420:45915643:-	0	-
#Deleted in new
chr3	45915420	45915659	ENSG00000163818.16|LZTFL1|pc|chr3:45915420:45915659:-	0	-
#Deleted in new
chr3	45915420	45915712	ENSG00000163818.16|LZTFL1|pc|chr3:45915420:45915712:-	0	-
#Deleted in new
chr3	45915420	45915724	ENSG00000163818.16|LZTFL1|pc|chr3:45915420:45915724:-	0	-
#Deleted in new
chr3	45915420	45916042	ENSG00000163818.16|LZTFL1|pc|chr3:45915420:45916042:-	0	-
#Deleted in new
chr3	45938195	45938255	ENSG00000163820.14|FYCO1|pc|chr3:45938195:45938255:-	0	-
#Partially deleted in new
chr3	45940932	45941297	ENSG00000172215.5|CXCR6|pc|chr3:45940932:45941297:+	0	+
#Partially deleted in new
chr3	4596062	4596184	ENSG00000150995.18|ITPR1|pc|chr3:4596062:4596184:+	0	+
#Deleted in new
chr3	46022155	46022277	ENSG00000173578.7|XCR1|pc|chr3:46022155:46022277:-	0	-
#Partially deleted in new
chr3	46027416	46027487	ENSG00000173578.7|XCR1|pc|chr3:46027416:46027487:-	0	-
#Partially deleted in new
chr3	46027416	46027742	ENSG00000173578.7|XCR1|pc|chr3:46027416:46027742:-	0	-
#Deleted in new
chr3	46163603	46163862	ENSG00000183625.14|CCR3|pc|chr3:46163603:46163862:+	0	+
#Deleted in new
chr3	46210690	46210907	ENSG00000183625.14|CCR3|pc|chr3:46210690:46210907:+	0	+
#Deleted in new
chr3	46364954	46365045	ENSG00000223552.1|AC098613.1|lncRNA|chr3:46364954:46365045:-	0	-
#Deleted in new
chr3	46392824	46393052	ENSG00000223552.1|AC098613.1|lncRNA|chr3:46392824:46393052:-	0	-
#Partially deleted in new
chr3	46406896	46407059	ENSG00000223552.1|AC098613.1|lncRNA|chr3:46406896:46407059:-	0	-
#Deleted in new
chr3	46416523	46419046	ENSG00000283646.1|LINC02009|lncRNA|chr3:46416523:46419046:-	0	-
#Deleted in new
chr3	46419516	46419663	ENSG00000283646.1|LINC02009|lncRNA|chr3:46419516:46419663:-	0	-
#Deleted in new
chr3	46421372	46421492	ENSG00000283646.1|LINC02009|lncRNA|chr3:46421372:46421492:-	0	-
#Deleted in new
chr3	46422684	46422798	ENSG00000283646.1|LINC02009|lncRNA|chr3:46422684:46422798:-	0	-
#Deleted in new
chr3	46423544	46423591	ENSG00000283646.1|LINC02009|lncRNA|chr3:46423544:46423591:-	0	-
#Deleted in new
chr3	46441761	46441905	ENSG00000012223.12|LTF|pc|chr3:46441761:46441905:-	0	-
#Deleted in new
chr3	46460564	46460597	ENSG00000012223.12|LTF|pc|chr3:46460564:46460597:-	0	-
#Deleted in new
chr3	46463443	46463671	ENSG00000012223.12|LTF|pc|chr3:46463443:46463671:-	0	-
#Deleted in new
chr3	46463466	46463644	ENSG00000012223.12|LTF|pc|chr3:46463466:46463644:-	0	-
#Deleted in new
chr3	46557397	46559688	ENSG00000268324.2|LRRC2-AS1|lncRNA|chr3:46557397:46559688:+	0	+
#Deleted in new
chr3	46557403	46557431	ENSG00000268324.2|LRRC2-AS1|lncRNA|chr3:46557403:46557431:+	0	+
#Deleted in new
chr3	46557673	46557735	ENSG00000268324.2|LRRC2-AS1|lncRNA|chr3:46557673:46557735:+	0	+
#Deleted in new
chr3	46559151	46559694	ENSG00000268324.2|LRRC2-AS1|lncRNA|chr3:46559151:46559694:+	0	+
#Deleted in new
chr3	46574533	46574583	ENSG00000241186.9|TDGF1|pc|chr3:46574533:46574583:+	0	+
#Split in new
chr3	46581131	46581860	ENSG00000241186.9|TDGF1|pc|chr3:46581131:46581860:+	0	+
#Deleted in new
chr3	46582578	46582728	ENSG00000283877.1|AC104304.1|pc|chr3:46582578:46582728:+	0	+
#Deleted in new
chr3	46596584	46596636	ENSG00000283877.1|AC104304.1|pc|chr3:46596584:46596636:+	0	+
#Deleted in new
chr3	46965983	46966129	ENSG00000160799.11|CCDC12|pc|chr3:46965983:46966129:-	0	-
#Deleted in new
chr3	47064554	47064630	ENSG00000181555.20|SETD2|pc|chr3:47064554:47064630:-	0	-
#Deleted in new
chr3	47119451	47119780	ENSG00000181555.20|SETD2|pc|chr3:47119451:47119780:-	0	-
#Deleted in new
chr3	47169168	47169396	ENSG00000227398.3|KIF9-AS1|lncRNA|chr3:47169168:47169396:+	0	+
#Deleted in new
chr3	47231766	47231863	ENSG00000227398.3|KIF9-AS1|lncRNA|chr3:47231766:47231863:+	0	+
#Deleted in new
chr3	47238403	47238569	ENSG00000227398.3|KIF9-AS1|lncRNA|chr3:47238403:47238569:+	0	+
#Deleted in new
chr3	47239562	47239915	ENSG00000088727.12|KIF9|pc|chr3:47239562:47239915:-	0	-
#Deleted in new
chr3	47239614	47240194	ENSG00000227398.3|KIF9-AS1|lncRNA|chr3:47239614:47240194:+	0	+
#Deleted in new
chr3	47263832	47263899	ENSG00000088727.12|KIF9|pc|chr3:47263832:47263899:-	0	-
#Deleted in new
chr3	47287219	47287458	ENSG00000114648.11|KLHL18|pc|chr3:47287219:47287458:+	0	+
#Deleted in new
chr3	47297561	47297672	ENSG00000114648.11|KLHL18|pc|chr3:47297561:47297672:+	0	+
#Partially deleted in new
chr3	47346949	47349073	ENSG00000280173.1|AC104447.1|lncRNA|chr3:47346949:47349073:+	0	+
#Partially deleted in new
chr3	47512991	47513381	ENSG00000163832.15|ELP6|pc|chr3:47512991:47513381:-	0	-
#Partially deleted in new
chr3	47513190	47513342	ENSG00000163832.15|ELP6|pc|chr3:47513190:47513342:-	0	-
#Partially deleted in new
chr3	47513222	47513339	ENSG00000163832.15|ELP6|pc|chr3:47513222:47513339:-	0	-
#Partially deleted in new
chr3	47601714	47601809	ENSG00000214773.1|AC112512.1|lncRNA|chr3:47601714:47601809:-	0	-
#Partially deleted in new
chr3	47603344	47604677	ENSG00000214773.1|AC112512.1|lncRNA|chr3:47603344:47604677:-	0	-
#Deleted in new
chr3	47610524	47610798	ENSG00000173473.10|SMARCC1|pc|chr3:47610524:47610798:-	0	-
#Partially deleted in new
chr3	47670349	47670717	ENSG00000173473.10|SMARCC1|pc|chr3:47670349:47670717:-	0	-
#Deleted in new
chr3	47746324	47746405	ENSG00000173473.10|SMARCC1|pc|chr3:47746324:47746405:-	0	-
#Deleted in new
chr3	47815962	47816128	ENSG00000132153.14|DHX30|pc|chr3:47815962:47816128:+	0	+
#Deleted in new
chr3	47815962	47816972	ENSG00000132153.14|DHX30|pc|chr3:47815962:47816972:+	0	+
#Deleted in new
chr3	47822096	47822231	ENSG00000132153.14|DHX30|pc|chr3:47822096:47822231:+	0	+
#Deleted in new
chr3	47822096	47822310	ENSG00000132153.14|DHX30|pc|chr3:47822096:47822310:+	0	+
#Deleted in new
chr3	47830779	47831128	ENSG00000132153.14|DHX30|pc|chr3:47830779:47831128:+	0	+
#Deleted in new
chr3	47987382	47987433	ENSG00000047849.21|MAP4|pc|chr3:47987382:47987433:-	0	-
#Deleted in new
chr3	48013474	48013517	ENSG00000047849.21|MAP4|pc|chr3:48013474:48013517:-	0	-
#Deleted in new
chr3	48241099	48241214	ENSG00000164048.13|ZNF589|pc|chr3:48241099:48241214:+	0	+
#Deleted in new
chr3	48241100	48241214	ENSG00000164048.13|ZNF589|pc|chr3:48241100:48241214:+	0	+
#Deleted in new
chr3	48241105	48241214	ENSG00000164048.13|ZNF589|pc|chr3:48241105:48241214:+	0	+
#Deleted in new
chr3	48241128	48241214	ENSG00000164048.13|ZNF589|pc|chr3:48241128:48241214:+	0	+
#Deleted in new
chr3	48241154	48241214	ENSG00000164048.13|ZNF589|pc|chr3:48241154:48241214:+	0	+
#Deleted in new
chr3	48247624	48247677	ENSG00000164048.13|ZNF589|pc|chr3:48247624:48247677:+	0	+
#Deleted in new
chr3	48257928	48257961	ENSG00000164048.13|ZNF589|pc|chr3:48257928:48257961:+	0	+
#Deleted in new
chr3	48286245	48286630	ENSG00000164048.13|ZNF589|pc|chr3:48286245:48286630:+	0	+
#Deleted in new
chr3	48286245	48287627	ENSG00000164048.13|ZNF589|pc|chr3:48286245:48287627:+	0	+
#Partially deleted in new
chr3	48293263	48294803	ENSG00000172113.8|NME6|pc|chr3:48293263:48294803:-	0	-
#Partially deleted in new
chr3	48297476	48298523	ENSG00000172113.8|NME6|pc|chr3:48297476:48298523:-	0	-
#Deleted in new
chr3	48298954	48299253	ENSG00000164048.13|ZNF589|pc|chr3:48298954:48299253:+	0	+
#Duplicated in new
chr3	48381699	48382085	ENSG00000164049.14|FBXW12|pc|chr3:48381699:48382085:+	0	+
#Deleted in new
chr3	48394559	48394614	ENSG00000164049.14|FBXW12|pc|chr3:48394559:48394614:+	0	+
#Deleted in new
chr3	48394559	48394687	ENSG00000164049.14|FBXW12|pc|chr3:48394559:48394687:+	0	+
#Deleted in new
chr3	48394559	48394725	ENSG00000164049.14|FBXW12|pc|chr3:48394559:48394725:+	0	+
#Deleted in new
chr3	48395206	48395667	ENSG00000164049.14|FBXW12|pc|chr3:48395206:48395667:+	0	+
#Deleted in new
chr3	48397098	48397382	ENSG00000164049.14|FBXW12|pc|chr3:48397098:48397382:+	0	+
#Partially deleted in new
chr3	48400795	48401259	ENSG00000164049.14|FBXW12|pc|chr3:48400795:48401259:+	0	+
#Deleted in new
chr3	48437870	48438218	ENSG00000164051.13|CCDC51|pc|chr3:48437870:48438218:-	0	-
#Deleted in new
chr3	48445023	48445165	ENSG00000244380.1|AC134772.1|lncRNA|chr3:48445023:48445165:-	0	-
#Deleted in new
chr3	48461360	48461445	ENSG00000282827.2|AC134772.2|pc|chr3:48461360:48461445:+	0	+
#Deleted in new
chr3	48476819	48477091	ENSG00000164054.15|SHISA5|pc|chr3:48476819:48477091:-	0	-
#Deleted in new
chr3	4856635	4856755	ENSG00000235978.6|AC018816.1|lncRNA|chr3:4856635:4856755:-	0	-
#Deleted in new
chr3	48610819	48610976	ENSG00000010256.10|UQCRC1|pc|chr3:48610819:48610976:-	0	-
#Deleted in new
chr3	48669098	48669174	ENSG00000228350.1|CELSR3-AS1|lncRNA|chr3:48669098:48669174:+	0	+
#Partially deleted in new
chr3	48672454	48672733	ENSG00000271973.1|AC141002.1|lncRNA|chr3:48672454:48672733:+	0	+
#Deleted in new
chr3	48708119	48708237	ENSG00000068745.14|IP6K2|pc|chr3:48708119:48708237:-	0	-
#Partially deleted in new
chr3	48711366	48711459	ENSG00000068745.14|IP6K2|pc|chr3:48711366:48711459:-	0	-
#Deleted in new
chr3	48729654	48729777	ENSG00000068745.14|IP6K2|pc|chr3:48729654:48729777:-	0	-
#Partially deleted in new
chr3	48738881	48738966	ENSG00000068745.14|IP6K2|pc|chr3:48738881:48738966:-	0	-
#Deleted in new
chr3	48740205	48740353	ENSG00000068745.14|IP6K2|pc|chr3:48740205:48740353:-	0	-
#Partially deleted in new
chr3	48848986	48849454	ENSG00000224424.7|PRKAR2A-AS1|lncRNA|chr3:48848986:48849454:+	0	+
#Partially deleted in new
chr3	48848986	48851981	ENSG00000224424.7|PRKAR2A-AS1|lncRNA|chr3:48848986:48851981:+	0	+
#Deleted in new
chr3	4887228	4887293	ENSG00000235978.6|AC018816.1|lncRNA|chr3:4887228:4887293:-	0	-
#Deleted in new
chr3	48921479	48921576	ENSG00000177479.19|ARIH2|pc|chr3:48921479:48921576:+	0	+
#Deleted in new
chr3	48922348	48922468	ENSG00000177479.19|ARIH2|pc|chr3:48922348:48922468:+	0	+
#Deleted in new
chr3	48924715	48924839	ENSG00000177479.19|ARIH2|pc|chr3:48924715:48924839:+	0	+
#Deleted in new
chr3	48924717	48924839	ENSG00000177479.19|ARIH2|pc|chr3:48924717:48924839:+	0	+
#Deleted in new
chr3	48924717	48924971	ENSG00000177479.19|ARIH2|pc|chr3:48924717:48924971:+	0	+
#Deleted in new
chr3	48924717	48925082	ENSG00000177479.19|ARIH2|pc|chr3:48924717:48925082:+	0	+
#Deleted in new
chr3	48924717	48925217	ENSG00000177479.19|ARIH2|pc|chr3:48924717:48925217:+	0	+
#Deleted in new
chr3	48949065	48949096	ENSG00000177479.19|ARIH2|pc|chr3:48949065:48949096:+	0	+
#Deleted in new
chr3	4896808	4898699	ENSG00000235831.6|BHLHE40-AS1|lncRNA|chr3:4896808:4898699:-	0	-
#Partially deleted in new
chr3	48979917	48980346	ENSG00000235236.1|AC137630.2|lncRNA|chr3:48979917:48980346:-	0	-
#Partially deleted in new
chr3	48979931	48980346	ENSG00000235236.1|AC137630.2|lncRNA|chr3:48979931:48980346:-	0	-
#Deleted in new
chr3	4898225	4898935	ENSG00000235831.6|BHLHE40-AS1|lncRNA|chr3:4898225:4898935:-	0	-
#Deleted in new
chr3	4898678	4898935	ENSG00000235831.6|BHLHE40-AS1|lncRNA|chr3:4898678:4898935:-	0	-
#Partially deleted in new
chr3	48989547	48989988	ENSG00000223343.1|AC137630.1|lncRNA|chr3:48989547:48989988:-	0	-
#Deleted in new
chr3	48996127	48996416	ENSG00000178467.17|P4HTM|pc|chr3:48996127:48996416:+	0	+
#Deleted in new
chr3	49008908	49009024	ENSG00000178252.17|WDR6|pc|chr3:49008908:49009024:+	0	+
#Deleted in new
chr3	49008926	49009024	ENSG00000178252.17|WDR6|pc|chr3:49008926:49009024:+	0	+
#Partially deleted in new
chr3	49011420	49011516	ENSG00000178252.17|WDR6|pc|chr3:49011420:49011516:+	0	+
#Partially deleted in new
chr3	49011420	49011527	ENSG00000178252.17|WDR6|pc|chr3:49011420:49011527:+	0	+
#Deleted in new
chr3	49086882	49087089	ENSG00000198218.10|QRICH1|pc|chr3:49086882:49087089:-	0	-
#Deleted in new
chr3	49097109	49097287	ENSG00000172053.17|QARS|pc|chr3:49097109:49097287:-	0	-
#Deleted in new
chr3	49097133	49097287	ENSG00000172053.17|QARS|pc|chr3:49097133:49097287:-	0	-
#Deleted in new
chr3	49102702	49102732	ENSG00000172053.17|QARS|pc|chr3:49102702:49102732:-	0	-
#Deleted in new
chr3	49198427	49198460	ENSG00000173421.16|CCDC36|pc|chr3:49198427:49198460:+	0	+
#Deleted in new
chr3	49198541	49198662	ENSG00000173421.16|CCDC36|pc|chr3:49198541:49198662:+	0	+
#Deleted in new
chr3	49198886	49199107	ENSG00000173421.16|CCDC36|pc|chr3:49198886:49199107:+	0	+
#Deleted in new
chr3	49198889	49199107	ENSG00000173421.16|CCDC36|pc|chr3:49198889:49199107:+	0	+
#Deleted in new
chr3	49199499	49199573	ENSG00000173421.16|CCDC36|pc|chr3:49199499:49199573:+	0	+
#Deleted in new
chr3	49199509	49199573	ENSG00000173421.16|CCDC36|pc|chr3:49199509:49199573:+	0	+
#Deleted in new
chr3	49199616	49199869	ENSG00000173421.16|CCDC36|pc|chr3:49199616:49199869:+	0	+
#Deleted in new
chr3	49260084	49261311	ENSG00000225399.4|AC121247.1|lncRNA|chr3:49260084:49261311:+	0	+
#Deleted in new
chr3	49260084	49261316	ENSG00000225399.4|AC121247.1|lncRNA|chr3:49260084:49261316:+	0	+
#Deleted in new
chr3	49293545	49293644	ENSG00000114316.12|USP4|pc|chr3:49293545:49293644:-	0	-
#Partially deleted in new
chr3	49311513	49312863	ENSG00000114316.12|USP4|pc|chr3:49311513:49312863:-	0	-
#Deleted in new
chr3	49311784	49312613	ENSG00000114316.12|USP4|pc|chr3:49311784:49312613:-	0	-
#Deleted in new
chr3	49313870	49314044	ENSG00000114316.12|USP4|pc|chr3:49313870:49314044:-	0	-
#Deleted in new
chr3	49318308	49318657	ENSG00000114316.12|USP4|pc|chr3:49318308:49318657:-	0	-
#Deleted in new
chr3	49318308	49318774	ENSG00000114316.12|USP4|pc|chr3:49318308:49318774:-	0	-
#Deleted in new
chr3	49365144	49365224	ENSG00000235908.1|RHOA-IT1|lncRNA|chr3:49365144:49365224:-	0	-
#Deleted in new
chr3	49366569	49367006	ENSG00000235908.1|RHOA-IT1|lncRNA|chr3:49366569:49367006:-	0	-
#Deleted in new
chr3	49373239	49373342	ENSG00000067560.10|RHOA|pc|chr3:49373239:49373342:-	0	-
#Deleted in new
chr3	49406711	49406806	ENSG00000067560.10|RHOA|pc|chr3:49406711:49406806:-	0	-
#Deleted in new
chr3	49418166	49418228	ENSG00000145020.15|AMT|pc|chr3:49418166:49418228:-	0	-
#Deleted in new
chr3	49418207	49418228	ENSG00000145020.15|AMT|pc|chr3:49418207:49418228:-	0	-
#Partially deleted in new
chr3	49468702	49469055	ENSG00000173402.11|DAG1|pc|chr3:49468702:49469055:+	0	+
#Partially deleted in new
chr3	49468712	49469055	ENSG00000173402.11|DAG1|pc|chr3:49468712:49469055:+	0	+
#Deleted in new
chr3	49488625	49488745	ENSG00000173402.11|DAG1|pc|chr3:49488625:49488745:+	0	+
#Deleted in new
chr3	49488697	49488745	ENSG00000173402.11|DAG1|pc|chr3:49488697:49488745:+	0	+
#Deleted in new
chr3	49492715	49492973	ENSG00000173402.11|DAG1|pc|chr3:49492715:49492973:+	0	+
#Deleted in new
chr3	49492822	49492973	ENSG00000173402.11|DAG1|pc|chr3:49492822:49492973:+	0	+
#Deleted in new
chr3	49492826	49492973	ENSG00000173402.11|DAG1|pc|chr3:49492826:49492973:+	0	+
#Deleted in new
chr3	4949558	4949698	ENSG00000235831.6|BHLHE40-AS1|lncRNA|chr3:4949558:4949698:-	0	-
#Deleted in new
chr3	49640482	49640793	ENSG00000235120.1|BSN-AS1|lncRNA|chr3:49640482:49640793:-	0	-
#Deleted in new
chr3	49748868	49748928	ENSG00000176095.11|IP6K1|pc|chr3:49748868:49748928:-	0	-
#Deleted in new
chr3	49785479	49785500	ENSG00000176095.11|IP6K1|pc|chr3:49785479:49785500:-	0	-
#Partially deleted in new
chr3	49906061	49906237	ENSG00000228008.1|AC105935.1|lncRNA|chr3:49906061:49906237:+	0	+
#Deleted in new
chr3	49915872	49915990	ENSG00000164077.13|MON1A|pc|chr3:49915872:49915990:-	0	-
#Deleted in new
chr3	49916441	49916937	ENSG00000228008.1|AC105935.1|lncRNA|chr3:49916441:49916937:+	0	+
#Deleted in new
chr3	49924533	49924673	ENSG00000164077.13|MON1A|pc|chr3:49924533:49924673:-	0	-
#Deleted in new
chr3	49981560	49981668	ENSG00000004534.14|RBM6|pc|chr3:49981560:49981668:+	0	+
#Deleted in new
chr3	50065578	50065632	ENSG00000004534.14|RBM6|pc|chr3:50065578:50065632:+	0	+
#Deleted in new
chr3	50092978	50093042	ENSG00000003756.16|RBM5|pc|chr3:50092978:50093042:+	0	+
#Partially deleted in new
chr3	50112063	50112128	ENSG00000003756.16|RBM5|pc|chr3:50112063:50112128:+	0	+
#Deleted in new
chr3	50116544	50116717	ENSG00000003756.16|RBM5|pc|chr3:50116544:50116717:+	0	+
#Partially deleted in new
chr3	50207335	50207477	ENSG00000188338.14|SLC38A3|pc|chr3:50207335:50207477:+	0	+
#Deleted in new
chr3	50309658	50309777	ENSG00000114378.16|HYAL1|pc|chr3:50309658:50309777:-	0	-
#Deleted in new
chr3	50312263	50312381	ENSG00000114378.16|HYAL1|pc|chr3:50312263:50312381:-	0	-
#Partially deleted in new
chr3	50345487	50346852	ENSG00000004838.13|ZMYND10|pc|chr3:50345487:50346852:-	0	-
#Deleted in new
chr3	50415802	50416216	ENSG00000007402.11|CACNA2D2|pc|chr3:50415802:50416216:-	0	-
#Deleted in new
chr3	50612847	50612942	ENSG00000114738.10|MAPKAPK3|pc|chr3:50612847:50612942:+	0	+
#Deleted in new
chr3	50613791	50613900	ENSG00000114738.10|MAPKAPK3|pc|chr3:50613791:50613900:+	0	+
#Deleted in new
chr3	50613791	50614018	ENSG00000114738.10|MAPKAPK3|pc|chr3:50613791:50614018:+	0	+
#Partially deleted in new
chr3	50613791	50614117	ENSG00000114738.10|MAPKAPK3|pc|chr3:50613791:50614117:+	0	+
#Deleted in new
chr3	51386908	51387046	ENSG00000145050.15|MANF|pc|chr3:51386908:51387046:+	0	+
#Deleted in new
chr3	51541143	51541870	ENSG00000164080.13|RAD54L2|pc|chr3:51541143:51541870:+	0	+
#Deleted in new
chr3	51541579	51541650	ENSG00000164080.13|RAD54L2|pc|chr3:51541579:51541650:+	0	+
#Deleted in new
chr3	5156904	5157023	ENSG00000233912.1|AC026202.2|lncRNA|chr3:5156904:5157023:-	0	-
#Deleted in new
chr3	5157761	5157851	ENSG00000233912.1|AC026202.2|lncRNA|chr3:5157761:5157851:-	0	-
#Partially deleted in new
chr3	5170502	5170937	ENSG00000134108.12|ARL8B|pc|chr3:5170502:5170937:+	0	+
#Deleted in new
chr3	51826873	51827347	ENSG00000229972.7|IQCF3|pc|chr3:51826873:51827347:+	0	+
#Deleted in new
chr3	51826882	51827314	ENSG00000229972.7|IQCF3|pc|chr3:51826882:51827314:+	0	+
#Deleted in new
chr3	51826882	51827347	ENSG00000229972.7|IQCF3|pc|chr3:51826882:51827347:+	0	+
#Deleted in new
chr3	51828155	51828221	ENSG00000229972.7|IQCF3|pc|chr3:51828155:51828221:+	0	+
#Deleted in new
chr3	51828552	51828807	ENSG00000229972.7|IQCF3|pc|chr3:51828552:51828807:+	0	+
#Deleted in new
chr3	51828644	51828807	ENSG00000229972.7|IQCF3|pc|chr3:51828644:51828807:+	0	+
#Deleted in new
chr3	51828645	51828807	ENSG00000229972.7|IQCF3|pc|chr3:51828645:51828807:+	0	+
#Deleted in new
chr3	51828650	51828807	ENSG00000229972.7|IQCF3|pc|chr3:51828650:51828807:+	0	+
#Partially deleted in new
chr3	51829273	51829306	ENSG00000229972.7|IQCF3|pc|chr3:51829273:51829306:+	0	+
#Split in new
chr3	51874387	51875767	ENSG00000235455.1|IQCF5-AS1|lncRNA|chr3:51874387:51875767:+	0	+
#Deleted in new
chr3	51902789	51902839	ENSG00000173389.15|IQCF1|pc|chr3:51902789:51902839:-	0	-
#Deleted in new
chr3	51902984	51903089	ENSG00000173389.15|IQCF1|pc|chr3:51902984:51903089:-	0	-
#Partially deleted in new
chr3	51951848	51953902	ENSG00000280422.1|AC115284.2|lncRNA|chr3:51951848:51953902:-	0	-
#Partially deleted in new
chr3	51961748	51961894	ENSG00000090097.21|PCBP4|pc|chr3:51961748:51961894:-	0	-
#Deleted in new
chr3	51978680	51978734	ENSG00000248487.8|ABHD14A|pc|chr3:51978680:51978734:+	0	+
#Deleted in new
chr3	51984653	51984799	ENSG00000243989.8|ACY1|pc|chr3:51984653:51984799:+	0	+
#Partially deleted in new
chr3	52217015	52219012	ENSG00000280003.1|AC097637.2|lncRNA|chr3:52217015:52219012:-	0	-
#Deleted in new
chr3	52240174	52241097	ENSG00000243224.1|AC006252.1|lncRNA|chr3:52240174:52241097:+	0	+
#Deleted in new
chr3	52240177	52241097	ENSG00000243224.1|AC006252.1|lncRNA|chr3:52240177:52241097:+	0	+
#Deleted in new
chr3	52284527	52284591	ENSG00000164091.11|WDR82|pc|chr3:52284527:52284591:-	0	-
#Deleted in new
chr3	52414727	52414836	ENSG00000010318.20|PHF7|pc|chr3:52414727:52414836:+	0	+
#Deleted in new
chr3	52470555	52470663	ENSG00000010322.15|NISCH|pc|chr3:52470555:52470663:+	0	+
#Deleted in new
chr3	52475615	52475905	ENSG00000010322.15|NISCH|pc|chr3:52475615:52475905:+	0	+
#Deleted in new
chr3	52486469	52486552	ENSG00000010322.15|NISCH|pc|chr3:52486469:52486552:+	0	+
#Partially deleted in new
chr3	52540423	52541891	ENSG00000168273.7|SMIM4|pc|chr3:52540423:52541891:+	0	+
#Partially deleted in new
chr3	5255534	5255815	ENSG00000230944.1|AC026202.1|lncRNA|chr3:5255534:5255815:-	0	-
#Deleted in new
chr3	5256457	5256761	ENSG00000230944.1|AC026202.1|lncRNA|chr3:5256457:5256761:-	0	-
#Deleted in new
chr3	52686170	52686425	ENSG00000163938.16|GNL3|pc|chr3:52686170:52686425:+	0	+
#Deleted in new
chr3	52686176	52686425	ENSG00000163938.16|GNL3|pc|chr3:52686176:52686425:+	0	+
#Deleted in new
chr3	52701208	52701343	ENSG00000016864.18|GLT8D1|pc|chr3:52701208:52701343:-	0	-
#Deleted in new
chr3	52703086	52703255	ENSG00000016864.18|GLT8D1|pc|chr3:52703086:52703255:-	0	-
#Deleted in new
chr3	52747329	52747451	ENSG00000114904.12|NEK4|pc|chr3:52747329:52747451:-	0	-
#Deleted in new
chr3	52749691	52749829	ENSG00000114904.12|NEK4|pc|chr3:52749691:52749829:-	0	-
#Deleted in new
chr3	52822265	52822339	ENSG00000055955.15|ITIH4|pc|chr3:52822265:52822339:-	0	-
#Partially deleted in new
chr3	52831407	52831478	ENSG00000243696.4|AC006254.1|pc|chr3:52831407:52831478:-	0	-
#Partially deleted in new
chr3	52831407	52831479	ENSG00000055955.15|ITIH4|pc|chr3:52831407:52831479:-	0	-
#Deleted in new
chr3	53018085	53018228	ENSG00000163935.13|SFMBT1|pc|chr3:53018085:53018228:-	0	-
#Deleted in new
chr3	53018085	53018228	ENSG00000272305.5|AC096887.1|pc|chr3:53018085:53018228:-	0	-
#Deleted in new
chr3	53019015	53019122	ENSG00000272305.5|AC096887.1|pc|chr3:53019015:53019122:-	0	-
#Deleted in new
chr3	53019029	53019122	ENSG00000163935.13|SFMBT1|pc|chr3:53019029:53019122:-	0	-
#Deleted in new
chr3	53019029	53019122	ENSG00000272305.5|AC096887.1|pc|chr3:53019029:53019122:-	0	-
#Deleted in new
chr3	53077687	53077828	ENSG00000272305.5|AC096887.1|pc|chr3:53077687:53077828:-	0	-
#Deleted in new
chr3	53077978	53078211	ENSG00000272305.5|AC096887.1|pc|chr3:53077978:53078211:-	0	-
#Deleted in new
chr3	53085749	53085852	ENSG00000272305.5|AC096887.1|pc|chr3:53085749:53085852:-	0	-
#Deleted in new
chr3	53173526	53173608	ENSG00000163932.13|PRKCD|pc|chr3:53173526:53173608:+	0	+
#Deleted in new
chr3	53237796	53237820	ENSG00000163931.15|TKT|pc|chr3:53237796:53237820:-	0	-
#Deleted in new
chr3	53237796	53237921	ENSG00000163931.15|TKT|pc|chr3:53237796:53237921:-	0	-
#Deleted in new
chr3	536230	536327	ENSG00000224957.5|LINC01266|lncRNA|chr3:536230:536327:+	0	+
#Deleted in new
chr3	536252	536327	ENSG00000224957.5|LINC01266|lncRNA|chr3:536252:536327:+	0	+
#Deleted in new
chr3	54292	54346	ENSG00000224918.1|AC066595.1|lncRNA|chr3:54292:54346:-	0	-
#Deleted in new
chr3	54633558	54633740	ENSG00000265992.1|ESRG|lncRNA|chr3:54633558:54633740:-	0	-
#Deleted in new
chr3	54634460	54634565	ENSG00000265992.1|ESRG|lncRNA|chr3:54634460:54634565:-	0	-
#Deleted in new
chr3	54637690	54639857	ENSG00000265992.1|ESRG|lncRNA|chr3:54637690:54639857:-	0	-
#Deleted in new
chr3	54894612	54894755	ENSG00000243715.1|CACNA2D3-AS1|lncRNA|chr3:54894612:54894755:-	0	-
#Deleted in new
chr3	54966927	54967088	ENSG00000144771.7|LRTM1|pc|chr3:54966927:54967088:-	0	-
#Deleted in new
chr3	55178171	55178416	ENSG00000243572.1|LINC02017|lncRNA|chr3:55178171:55178416:+	0	+
#Deleted in new
chr3	55497388	55497477	ENSG00000242317.1|AC121764.1|lncRNA|chr3:55497388:55497477:-	0	-
#Deleted in new
chr3	55505197	55505261	ENSG00000242317.1|AC121764.1|lncRNA|chr3:55505197:55505261:-	0	-
#Deleted in new
chr3	55612694	55612736	ENSG00000240777.2|AC025572.1|lncRNA|chr3:55612694:55612736:+	0	+
#Deleted in new
chr3	55766683	55766799	ENSG00000187672.12|ERC2|pc|chr3:55766683:55766799:-	0	-
#Deleted in new
chr3	56560861	56561012	ENSG00000180376.16|CCDC66|pc|chr3:56560861:56561012:+	0	+
#Deleted in new
chr3	56560861	56561222	ENSG00000180376.16|CCDC66|pc|chr3:56560861:56561222:+	0	+
#Deleted in new
chr3	56561256	56561378	ENSG00000180376.16|CCDC66|pc|chr3:56561256:56561378:+	0	+
#Deleted in new
chr3	56565133	56565177	ENSG00000180376.16|CCDC66|pc|chr3:56565133:56565177:+	0	+
#Deleted in new
chr3	56565133	56565204	ENSG00000180376.16|CCDC66|pc|chr3:56565133:56565204:+	0	+
#Deleted in new
chr3	56565133	56565205	ENSG00000180376.16|CCDC66|pc|chr3:56565133:56565205:+	0	+
#Deleted in new
chr3	56569312	56570671	ENSG00000180376.16|CCDC66|pc|chr3:56569312:56570671:+	0	+
#Partially deleted in new
chr3	56569312	56570746	ENSG00000180376.16|CCDC66|pc|chr3:56569312:56570746:+	0	+
#Partially deleted in new
chr3	56628743	56629103	ENSG00000163946.13|FAM208A|pc|chr3:56628743:56629103:-	0	-
#Partially deleted in new
chr3	56663540	56664331	ENSG00000163946.13|FAM208A|pc|chr3:56663540:56664331:-	0	-
#Deleted in new
chr3	56898549	56898638	ENSG00000163947.11|ARHGEF3|pc|chr3:56898549:56898638:-	0	-
#Deleted in new
chr3	56940580	56940656	ENSG00000240198.5|ARHGEF3-AS1|lncRNA|chr3:56940580:56940656:+	0	+
#Deleted in new
chr3	56940890	56941048	ENSG00000240198.5|ARHGEF3-AS1|lncRNA|chr3:56940890:56941048:+	0	+
#Deleted in new
chr3	56960579	56960854	ENSG00000240198.5|ARHGEF3-AS1|lncRNA|chr3:56960579:56960854:+	0	+
#Deleted in new
chr3	56975761	56975820	ENSG00000163947.11|ARHGEF3|pc|chr3:56975761:56975820:-	0	-
#Deleted in new
chr3	57076745	57076892	ENSG00000163947.11|ARHGEF3|pc|chr3:57076745:57076892:-	0	-
#Deleted in new
chr3	57169231	57169394	ENSG00000144730.17|IL17RD|pc|chr3:57169231:57169394:-	0	-
#Deleted in new
chr3	57170232	57170295	ENSG00000144730.17|IL17RD|pc|chr3:57170232:57170295:-	0	-
#Deleted in new
chr3	57170232	57170306	ENSG00000144730.17|IL17RD|pc|chr3:57170232:57170306:-	0	-
#Deleted in new
chr3	57230713	57230767	ENSG00000157500.10|APPL1|pc|chr3:57230713:57230767:+	0	+
#Deleted in new
chr3	57288962	57288966	ENSG00000239388.8|ASB14|pc|chr3:57288962:57288966:-	0	-
#Deleted in new
chr3	57402391	57402429	ENSG00000174844.14|DNAH12|pc|chr3:57402391:57402429:-	0	-
#Deleted in new
chr3	57498003	57498538	ENSG00000174844.14|DNAH12|pc|chr3:57498003:57498538:-	0	-
#Deleted in new
chr3	57498499	57498538	ENSG00000174844.14|DNAH12|pc|chr3:57498499:57498538:-	0	-
#Partially deleted in new
chr3	57544196	57544341	ENSG00000174844.14|DNAH12|pc|chr3:57544196:57544341:-	0	-
#Partially deleted in new
chr3	57544196	57544344	ENSG00000174844.14|DNAH12|pc|chr3:57544196:57544344:-	0	-
#Deleted in new
chr3	57600058	57600169	ENSG00000272146.5|ARF4-AS1|lncRNA|chr3:57600058:57600169:+	0	+
#Deleted in new
chr3	57600742	57600916	ENSG00000272146.5|ARF4-AS1|lncRNA|chr3:57600742:57600916:+	0	+
#Deleted in new
chr3	57600742	57600920	ENSG00000272146.5|ARF4-AS1|lncRNA|chr3:57600742:57600920:+	0	+
#Deleted in new
chr3	57600742	57600927	ENSG00000272146.5|ARF4-AS1|lncRNA|chr3:57600742:57600927:+	0	+
#Deleted in new
chr3	57654623	57654918	ENSG00000239801.1|DENND6A-AS1|lncRNA|chr3:57654623:57654918:+	0	+
#Partially deleted in new
chr3	57896872	57902145	ENSG00000163681.14|SLMAP|pc|chr3:57896872:57902145:+	0	+
#Deleted in new
chr3	58152707	58152854	ENSG00000136068.14|FLNB|pc|chr3:58152707:58152854:+	0	+
#Deleted in new
chr3	58178239	58178374	ENSG00000283148.1|AC137936.1|lncRNA|chr3:58178239:58178374:-	0	-
#Deleted in new
chr3	58214107	58214196	ENSG00000163687.13|DNASE1L3|pc|chr3:58214107:58214196:-	0	-
#Partially deleted in new
chr3	58214301	58214671	ENSG00000163687.13|DNASE1L3|pc|chr3:58214301:58214671:-	0	-
#Partially deleted in new
chr3	58214301	58214697	ENSG00000163687.13|DNASE1L3|pc|chr3:58214301:58214697:-	0	-
#Deleted in new
chr3	58295345	58295693	ENSG00000163686.14|ABHD6|pc|chr3:58295345:58295693:+	0	+
#Deleted in new
chr3	58307762	58307979	ENSG00000255154.7|HTD2|pc|chr3:58307762:58307979:+	0	+
#Deleted in new
chr3	58315700	58315819	ENSG00000163684.11|RPP14|pc|chr3:58315700:58315819:+	0	+
#Deleted in new
chr3	58315700	58315819	ENSG00000255154.7|HTD2|pc|chr3:58315700:58315819:+	0	+
#Deleted in new
chr3	58315721	58315803	ENSG00000255154.7|HTD2|pc|chr3:58315721:58315803:+	0	+
#Deleted in new
chr3	58315721	58315819	ENSG00000255154.7|HTD2|pc|chr3:58315721:58315819:+	0	+
#Deleted in new
chr3	58318522	58318575	ENSG00000163684.11|RPP14|pc|chr3:58318522:58318575:+	0	+
#Deleted in new
chr3	58318768	58319509	ENSG00000163684.11|RPP14|pc|chr3:58318768:58319509:+	0	+
#Deleted in new
chr3	58329964	58330118	ENSG00000273493.1|AC098479.1|lncRNA|chr3:58329964:58330118:+	0	+
#Deleted in new
chr3	58333305	58333624	ENSG00000168297.15|PXK|pc|chr3:58333305:58333624:+	0	+
#Deleted in new
chr3	58500310	58500403	ENSG00000168301.12|KCTD6|pc|chr3:58500310:58500403:+	0	+
#Deleted in new
chr3	58510978	58511054	ENSG00000168306.12|ACOX2|pc|chr3:58510978:58511054:-	0	-
#Deleted in new
chr3	58589205	58589269	ENSG00000168309.16|FAM107A|pc|chr3:58589205:58589269:-	0	-
#Deleted in new
chr3	58607079	58607129	ENSG00000244383.1|FAM3D-AS1|lncRNA|chr3:58607079:58607129:+	0	+
#Deleted in new
chr3	58607681	58607945	ENSG00000244383.1|FAM3D-AS1|lncRNA|chr3:58607681:58607945:+	0	+
#Deleted in new
chr3	58717364	58717628	ENSG00000163689.19|C3orf67|pc|chr3:58717364:58717628:-	0	-
#Deleted in new
chr3	58717366	58717628	ENSG00000163689.19|C3orf67|pc|chr3:58717366:58717628:-	0	-
#Deleted in new
chr3	58725867	58728137	ENSG00000163689.19|C3orf67|pc|chr3:58725867:58728137:-	0	-
#Deleted in new
chr3	58727969	58728137	ENSG00000163689.19|C3orf67|pc|chr3:58727969:58728137:-	0	-
#Deleted in new
chr3	58887345	58887439	ENSG00000163689.19|C3orf67|pc|chr3:58887345:58887439:-	0	-
#Deleted in new
chr3	58970357	58970568	ENSG00000242428.5|C3orf67-AS1|lncRNA|chr3:58970357:58970568:+	0	+
#Deleted in new
chr3	58970357	58970660	ENSG00000242428.5|C3orf67-AS1|lncRNA|chr3:58970357:58970660:+	0	+
#Deleted in new
chr3	58970357	58970728	ENSG00000242428.5|C3orf67-AS1|lncRNA|chr3:58970357:58970728:+	0	+
#Deleted in new
chr3	58992507	58992615	ENSG00000163689.19|C3orf67|pc|chr3:58992507:58992615:-	0	-
#Deleted in new
chr3	59065149	59065266	ENSG00000243295.1|AC114400.1|lncRNA|chr3:59065149:59065266:+	0	+
#Deleted in new
chr3	59388670	59388704	ENSG00000243903.1|AC138057.1|lncRNA|chr3:59388670:59388704:-	0	-
#Deleted in new
chr3	59510391	59510678	ENSG00000242545.1|AC126121.2|lncRNA|chr3:59510391:59510678:-	0	-
#Deleted in new
chr3	59749309	59749568	ENSG00000189283.9|FHIT|pc|chr3:59749309:59749568:-	0	-
#Deleted in new
chr3	59749309	59749579	ENSG00000189283.9|FHIT|pc|chr3:59749309:59749579:-	0	-
#Partially deleted in new
chr3	59751406	59752321	ENSG00000189283.9|FHIT|pc|chr3:59751406:59752321:-	0	-
#Deleted in new
chr3	59886219	59886287	ENSG00000189283.9|FHIT|pc|chr3:59886219:59886287:-	0	-
#Deleted in new
chr3	60077369	60077526	ENSG00000189283.9|FHIT|pc|chr3:60077369:60077526:-	0	-
#Deleted in new
chr3	61165574	61165828	ENSG00000189283.9|FHIT|pc|chr3:61165574:61165828:-	0	-
#Deleted in new
chr3	61244009	61244150	ENSG00000189283.9|FHIT|pc|chr3:61244009:61244150:-	0	-
#Deleted in new
chr3	62263874	62264142	ENSG00000241472.6|PTPRG-AS1|lncRNA|chr3:62263874:62264142:-	0	-
#Deleted in new
chr3	62263928	62264142	ENSG00000241472.6|PTPRG-AS1|lncRNA|chr3:62263928:62264142:-	0	-
#Deleted in new
chr3	62264041	62264142	ENSG00000241472.6|PTPRG-AS1|lncRNA|chr3:62264041:62264142:-	0	-
#Partially deleted in new
chr3	62317807	62317900	ENSG00000241472.6|PTPRG-AS1|lncRNA|chr3:62317807:62317900:-	0	-
#Partially deleted in new
chr3	62317807	62317903	ENSG00000241472.6|PTPRG-AS1|lncRNA|chr3:62317807:62317903:-	0	-
#Deleted in new
chr3	62950429	62950518	ENSG00000244342.5|LINC00698|lncRNA|chr3:62950429:62950518:+	0	+
#Deleted in new
chr3	62950457	62950518	ENSG00000244342.5|LINC00698|lncRNA|chr3:62950457:62950518:+	0	+
#Deleted in new
chr3	62950470	62950518	ENSG00000244342.5|LINC00698|lncRNA|chr3:62950470:62950518:+	0	+
#Deleted in new
chr3	62952006	62952083	ENSG00000244342.5|LINC00698|lncRNA|chr3:62952006:62952083:+	0	+
#Deleted in new
chr3	63122255	63122319	ENSG00000244342.5|LINC00698|lncRNA|chr3:63122255:63122319:+	0	+
#Deleted in new
chr3	63228314	63228380	ENSG00000163630.10|SYNPR|pc|chr3:63228314:63228380:+	0	+
#Deleted in new
chr3	63267316	63267449	ENSG00000163630.10|SYNPR|pc|chr3:63267316:63267449:+	0	+
#Deleted in new
chr3	63289374	63289499	ENSG00000163630.10|SYNPR|pc|chr3:63289374:63289499:+	0	+
#Deleted in new
chr3	63330069	63330298	ENSG00000163630.10|SYNPR|pc|chr3:63330069:63330298:+	0	+
#Deleted in new
chr3	63426712	63426806	ENSG00000241359.1|SYNPR-AS1|lncRNA|chr3:63426712:63426806:-	0	-
#Deleted in new
chr3	63663696	63663786	ENSG00000188817.7|SNTN|pc|chr3:63663696:63663786:+	0	+
#Partially deleted in new
chr3	63675549	63679020	ENSG00000188817.7|SNTN|pc|chr3:63675549:63679020:+	0	+
#Deleted in new
chr3	63832852	63832867	ENSG00000163632.12|C3orf49|pc|chr3:63832852:63832867:+	0	+
#Deleted in new
chr3	63845022	63845082	ENSG00000163632.12|C3orf49|pc|chr3:63845022:63845082:+	0	+
#Deleted in new
chr3	63846103	63846217	ENSG00000163634.11|THOC7|pc|chr3:63846103:63846217:-	0	-
#Deleted in new
chr3	63848363	63848636	ENSG00000163632.12|C3orf49|pc|chr3:63848363:63848636:+	0	+
#Deleted in new
chr3	63854607	63854742	ENSG00000163634.11|THOC7|pc|chr3:63854607:63854742:-	0	-
#Deleted in new
chr3	63860644	63860996	ENSG00000240549.2|THOC7-AS1|lncRNA|chr3:63860644:63860996:+	0	+
#Deleted in new
chr3	63873748	63873846	ENSG00000163635.17|ATXN7|pc|chr3:63873748:63873846:+	0	+
#Deleted in new
chr3	64008081	64008692	ENSG00000271843.1|AC012557.1|lncRNA|chr3:64008081:64008692:-	0	-
#Deleted in new
chr3	64011796	64012148	ENSG00000239653.1|PSMD6-AS2|lncRNA|chr3:64011796:64012148:+	0	+
#Deleted in new
chr3	64011963	64012042	ENSG00000243410.1|PSMD6-AS1|lncRNA|chr3:64011963:64012042:+	0	+
#Partially deleted in new
chr3	64013438	64017732	ENSG00000163636.10|PSMD6|pc|chr3:64013438:64017732:-	0	-
#Deleted in new
chr3	64015884	64016246	ENSG00000243410.1|PSMD6-AS1|lncRNA|chr3:64015884:64016246:+	0	+
#Deleted in new
chr3	64067963	64068161	ENSG00000241111.1|PRICKLE2-AS1|lncRNA|chr3:64067963:64068161:+	0	+
#Deleted in new
chr3	64078360	64079235	ENSG00000189196.4|LINC00994|lncRNA|chr3:64078360:64079235:-	0	-
#Deleted in new
chr3	64079834	64080007	ENSG00000189196.4|LINC00994|lncRNA|chr3:64079834:64080007:-	0	-
#Deleted in new
chr3	64086876	64087363	ENSG00000189196.4|LINC00994|lncRNA|chr3:64086876:64087363:-	0	-
#Deleted in new
chr3	64182647	64182661	ENSG00000163637.12|PRICKLE2|pc|chr3:64182647:64182661:-	0	-
#Deleted in new
chr3	64521480	64521668	ENSG00000163638.13|ADAMTS9|pc|chr3:64521480:64521668:-	0	-
#Deleted in new
chr3	64521493	64521668	ENSG00000163638.13|ADAMTS9|pc|chr3:64521493:64521668:-	0	-
#Deleted in new
chr3	64741473	64741614	ENSG00000241684.5|ADAMTS9-AS2|lncRNA|chr3:64741473:64741614:+	0	+
#Deleted in new
chr3	64867167	64867257	ENSG00000241684.5|ADAMTS9-AS2|lncRNA|chr3:64867167:64867257:+	0	+
#Deleted in new
chr3	6490478	6490672	ENSG00000189229.10|AC069277.1|lncRNA|chr3:6490478:6490672:+	0	+
#Deleted in new
chr3	6490733	6490942	ENSG00000189229.10|AC069277.1|lncRNA|chr3:6490733:6490942:+	0	+
#Deleted in new
chr3	6490802	6490946	ENSG00000189229.10|AC069277.1|lncRNA|chr3:6490802:6490946:+	0	+
#Deleted in new
chr3	6507780	6507952	ENSG00000189229.10|AC069277.1|lncRNA|chr3:6507780:6507952:+	0	+
#Deleted in new
chr3	65174957	65175076	ENSG00000243149.1|LINC02040|lncRNA|chr3:65174957:65175076:+	0	+
#Partially deleted in new
chr3	6557586	6557959	ENSG00000189229.10|AC069277.1|lncRNA|chr3:6557586:6557959:+	0	+
#Deleted in new
chr3	65609743	65609966	ENSG00000151276.23|MAGI1|pc|chr3:65609743:65609966:-	0	-
#Deleted in new
chr3	65717474	65717525	ENSG00000151276.23|MAGI1|pc|chr3:65717474:65717525:-	0	-
#Deleted in new
chr3	65719980	65720131	ENSG00000151276.23|MAGI1|pc|chr3:65719980:65720131:-	0	-
#Deleted in new
chr3	6578044	6578137	ENSG00000189229.10|AC069277.1|lncRNA|chr3:6578044:6578137:+	0	+
#Deleted in new
chr3	6583631	6584090	ENSG00000189229.10|AC069277.1|lncRNA|chr3:6583631:6584090:+	0	+
#Deleted in new
chr3	65893815	65893917	ENSG00000240175.1|MAGI1-AS1|lncRNA|chr3:65893815:65893917:+	0	+
#Deleted in new
chr3	65907622	65907675	ENSG00000151276.23|MAGI1|pc|chr3:65907622:65907675:-	0	-
#Partially deleted in new
chr3	65924899	65925297	ENSG00000240175.1|MAGI1-AS1|lncRNA|chr3:65924899:65925297:+	0	+
#Deleted in new
chr3	66304452	66304537	ENSG00000144741.17|SLC25A26|pc|chr3:66304452:66304537:+	0	+
#Partially deleted in new
chr3	66386183	66388116	ENSG00000144741.17|SLC25A26|pc|chr3:66386183:66388116:+	0	+
#Deleted in new
chr3	66404234	66404410	ENSG00000144749.13|LRIG1|pc|chr3:66404234:66404410:-	0	-
#Deleted in new
chr3	6640933	6641066	ENSG00000226258.6|GRM7-AS3|lncRNA|chr3:6640933:6641066:-	0	-
#Deleted in new
chr3	6644838	6644889	ENSG00000226258.6|GRM7-AS3|lncRNA|chr3:6644838:6644889:-	0	-
#Deleted in new
chr3	6644838	6644894	ENSG00000226258.6|GRM7-AS3|lncRNA|chr3:6644838:6644894:-	0	-
#Deleted in new
chr3	66468984	66469245	ENSG00000144749.13|LRIG1|pc|chr3:66468984:66469245:-	0	-
#Deleted in new
chr3	6664828	6664906	ENSG00000226258.6|GRM7-AS3|lncRNA|chr3:6664828:6664906:-	0	-
#Deleted in new
chr3	6664828	6664943	ENSG00000226258.6|GRM7-AS3|lncRNA|chr3:6664828:6664943:-	0	-
#Deleted in new
chr3	6694722	6694877	ENSG00000189229.10|AC069277.1|lncRNA|chr3:6694722:6694877:+	0	+
#Deleted in new
chr3	6694724	6694798	ENSG00000189229.10|AC069277.1|lncRNA|chr3:6694724:6694798:+	0	+
#Deleted in new
chr3	6721314	6721705	ENSG00000226258.6|GRM7-AS3|lncRNA|chr3:6721314:6721705:-	0	-
#Deleted in new
chr3	67304379	67304905	ENSG00000241884.2|AC114401.1|lncRNA|chr3:67304379:67304905:+	0	+
#Deleted in new
chr3	67304379	67306359	ENSG00000241884.2|AC114401.1|lncRNA|chr3:67304379:67306359:+	0	+
#Deleted in new
chr3	6736739	6736837	ENSG00000226258.6|GRM7-AS3|lncRNA|chr3:6736739:6736837:-	0	-
#Deleted in new
chr3	67668246	67668277	ENSG00000241316.6|SUCLG2-AS1|lncRNA|chr3:67668246:67668277:+	0	+
#Deleted in new
chr3	6770000	6770118	ENSG00000196277.15|GRM7|pc|chr3:6770000:6770118:+	0	+
#Deleted in new
chr3	6770068	6770118	ENSG00000196277.15|GRM7|pc|chr3:6770068:6770118:+	0	+
#Deleted in new
chr3	67749852	67749970	ENSG00000241316.6|SUCLG2-AS1|lncRNA|chr3:67749852:67749970:+	0	+
#Deleted in new
chr3	67840021	67840839	ENSG00000241316.6|SUCLG2-AS1|lncRNA|chr3:67840021:67840839:+	0	+
#Deleted in new
chr3	67889009	67889109	ENSG00000241316.6|SUCLG2-AS1|lncRNA|chr3:67889009:67889109:+	0	+
#Deleted in new
chr3	67947140	67947713	ENSG00000241316.6|SUCLG2-AS1|lncRNA|chr3:67947140:67947713:+	0	+
#Deleted in new
chr3	6828630	6828704	ENSG00000196277.15|GRM7|pc|chr3:6828630:6828704:+	0	+
#Deleted in new
chr3	68951790	68951874	ENSG00000163377.15|FAM19A4|pc|chr3:68951790:68951874:-	0	-
#Deleted in new
chr3	69016803	69017507	ENSG00000244513.6|AC109587.1|lncRNA|chr3:69016803:69017507:+	0	+
#Deleted in new
chr3	69033849	69033956	ENSG00000244513.6|AC109587.1|lncRNA|chr3:69033849:69033956:+	0	+
#Deleted in new
chr3	69040374	69040457	ENSG00000244513.6|AC109587.1|lncRNA|chr3:69040374:69040457:+	0	+
#Deleted in new
chr3	69076405	69076508	ENSG00000144744.16|UBA3|pc|chr3:69076405:69076508:-	0	-
#Deleted in new
chr3	69099971	69100069	ENSG00000144746.6|ARL6IP5|pc|chr3:69099971:69100069:+	0	+
#Deleted in new
chr3	69198985	69199270	ENSG00000114541.14|FRMD4B|pc|chr3:69198985:69199270:-	0	-
#Deleted in new
chr3	69336504	69336586	ENSG00000114541.14|FRMD4B|pc|chr3:69336504:69336586:-	0	-
#Deleted in new
chr3	69571001	69571122	ENSG00000240842.1|AC099328.2|lncRNA|chr3:69571001:69571122:-	0	-
#Deleted in new
chr3	69592444	69593121	ENSG00000241667.1|AC104445.1|lncRNA|chr3:69592444:69593121:+	0	+
#Deleted in new
chr3	69752039	69752385	ENSG00000187098.14|MITF|pc|chr3:69752039:69752385:+	0	+
#Deleted in new
chr3	69999549	69999620	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999549:69999620:+	0	+
#Deleted in new
chr3	69999555	69999620	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999555:69999620:+	0	+
#Deleted in new
chr3	69999556	69999620	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999556:69999620:+	0	+
#Deleted in new
chr3	69999571	69999620	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999571:69999620:+	0	+
#Deleted in new
chr3	69999575	69999620	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999575:69999620:+	0	+
#Deleted in new
chr3	69999576	69999620	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999576:69999620:+	0	+
#Deleted in new
chr3	69999582	69999620	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999582:69999620:+	0	+
#Deleted in new
chr3	69999586	69999620	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999586:69999620:+	0	+
#Deleted in new
chr3	69999593	69999620	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999593:69999620:+	0	+
#Deleted in new
chr3	69999598	69999620	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999598:69999620:+	0	+
#Deleted in new
chr3	69999606	69999867	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999606:69999867:+	0	+
#Deleted in new
chr3	69999732	69999867	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999732:69999867:+	0	+
#Deleted in new
chr3	69999733	69999867	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999733:69999867:+	0	+
#Deleted in new
chr3	69999747	69999867	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999747:69999867:+	0	+
#Deleted in new
chr3	69999774	69999867	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999774:69999867:+	0	+
#Deleted in new
chr3	69999783	69999867	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999783:69999867:+	0	+
#Deleted in new
chr3	69999787	69999867	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999787:69999867:+	0	+
#Deleted in new
chr3	69999845	69999867	ENSG00000240405.6|SAMMSON|lncRNA|chr3:69999845:69999867:+	0	+
#Deleted in new
chr3	70009123	70009285	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70009123:70009285:+	0	+
#Deleted in new
chr3	70012356	70012598	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70012356:70012598:+	0	+
#Deleted in new
chr3	70030334	70030724	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70030334:70030724:+	0	+
#Partially deleted in new
chr3	70094665	70094857	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70094665:70094857:+	0	+
#Deleted in new
chr3	70127686	70127784	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70127686:70127784:+	0	+
#Deleted in new
chr3	70137595	70137667	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70137595:70137667:+	0	+
#Deleted in new
chr3	70159583	70159621	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70159583:70159621:+	0	+
#Deleted in new
chr3	70249106	70249196	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70249106:70249196:+	0	+
#Deleted in new
chr3	70271784	70272334	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70271784:70272334:+	0	+
#Partially deleted in new
chr3	70332739	70332901	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70332739:70332901:+	0	+
#Deleted in new
chr3	70354174	70354277	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70354174:70354277:+	0	+
#Deleted in new
chr3	70424776	70425190	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70424776:70425190:+	0	+
#Deleted in new
chr3	70462559	70462662	ENSG00000240405.6|SAMMSON|lncRNA|chr3:70462559:70462662:+	0	+
#Deleted in new
chr3	71289542	71289616	ENSG00000277539.1|AC138058.1|lncRNA|chr3:71289542:71289616:-	0	-
#Deleted in new
chr3	71289768	71289971	ENSG00000244203.2|FOXP1-AS1|lncRNA|chr3:71289768:71289971:+	0	+
#Partially deleted in new
chr3	71292516	71292640	ENSG00000244203.2|FOXP1-AS1|lncRNA|chr3:71292516:71292640:+	0	+
#Deleted in new
chr3	71329780	71329820	ENSG00000114861.18|FOXP1|pc|chr3:71329780:71329820:-	0	-
#Deleted in new
chr3	71332193	71335281	ENSG00000114861.18|FOXP1|pc|chr3:71332193:71335281:-	0	-
#Deleted in new
chr3	71335159	71335281	ENSG00000114861.18|FOXP1|pc|chr3:71335159:71335281:-	0	-
#Partially deleted in new
chr3	71627640	71627784	ENSG00000277855.1|AC097634.3|lncRNA|chr3:71627640:71627784:+	0	+
#Partially deleted in new
chr3	72035299	72036520	ENSG00000241163.7|LINC00877|lncRNA|chr3:72035299:72036520:-	0	-
#Deleted in new
chr3	72059686	72060109	ENSG00000241163.7|LINC00877|lncRNA|chr3:72059686:72060109:-	0	-
#Deleted in new
chr3	72059821	72060109	ENSG00000241163.7|LINC00877|lncRNA|chr3:72059821:72060109:-	0	-
#Deleted in new
chr3	72060509	72060611	ENSG00000241163.7|LINC00877|lncRNA|chr3:72060509:72060611:-	0	-
#Deleted in new
chr3	72067123	72067202	ENSG00000273461.5|AC105265.3|lncRNA|chr3:72067123:72067202:+	0	+
#Deleted in new
chr3	72067911	72067983	ENSG00000273461.5|AC105265.3|lncRNA|chr3:72067911:72067983:+	0	+
#Deleted in new
chr3	72067911	72068020	ENSG00000273461.5|AC105265.3|lncRNA|chr3:72067911:72068020:+	0	+
#Deleted in new
chr3	72069808	72069933	ENSG00000273461.5|AC105265.3|lncRNA|chr3:72069808:72069933:+	0	+
#Deleted in new
chr3	72084420	72084641	ENSG00000276471.1|AC105265.4|lncRNA|chr3:72084420:72084641:-	0	-
#Deleted in new
chr3	72242434	72242565	ENSG00000241163.7|LINC00877|lncRNA|chr3:72242434:72242565:-	0	-
#Deleted in new
chr3	72279390	72279503	ENSG00000241163.7|LINC00877|lncRNA|chr3:72279390:72279503:-	0	-
#Deleted in new
chr3	72504805	72505089	ENSG00000244345.1|AC104435.2|lncRNA|chr3:72504805:72505089:-	0	-
#Deleted in new
chr3	72549384	72549504	ENSG00000244345.1|AC104435.2|lncRNA|chr3:72549384:72549504:-	0	-
#Deleted in new
chr3	72550090	72550552	ENSG00000244345.1|AC104435.2|lncRNA|chr3:72550090:72550552:-	0	-
#Partially deleted in new
chr3	72793247	72795590	ENSG00000144736.13|SHQ1|pc|chr3:72793247:72795590:-	0	-
#Deleted in new
chr3	72809619	72809952	ENSG00000144736.13|SHQ1|pc|chr3:72809619:72809952:-	0	-
#Deleted in new
chr3	72846214	72846363	ENSG00000144736.13|SHQ1|pc|chr3:72846214:72846363:-	0	-
#Deleted in new
chr3	72997357	72997412	ENSG00000163605.14|PPP4R2|pc|chr3:72997357:72997412:+	0	+
#Deleted in new
chr3	73014914	73014983	ENSG00000163605.14|PPP4R2|pc|chr3:73014914:73014983:+	0	+
#Deleted in new
chr3	73015821	73016134	ENSG00000163605.14|PPP4R2|pc|chr3:73015821:73016134:+	0	+
#Partially deleted in new
chr3	73061658	73063337	ENSG00000255423.1|EBLN2|pc|chr3:73061658:73063337:+	0	+
#Deleted in new
chr3	73561450	73561618	ENSG00000121440.14|PDZRN3|pc|chr3:73561450:73561618:-	0	-
#Deleted in new
chr3	73569150	73569461	ENSG00000121440.14|PDZRN3|pc|chr3:73569150:73569461:-	0	-
#Deleted in new
chr3	73808600	73808668	ENSG00000242741.1|LINC02005|lncRNA|chr3:73808600:73808668:+	0	+
#Deleted in new
chr3	7519740	7520015	ENSG00000236202.1|GRM7-AS1|lncRNA|chr3:7519740:7520015:-	0	-
#Deleted in new
chr3	7520137	7520280	ENSG00000236202.1|GRM7-AS1|lncRNA|chr3:7520137:7520280:-	0	-
#Deleted in new
chr3	7520163	7520280	ENSG00000236202.1|GRM7-AS1|lncRNA|chr3:7520163:7520280:-	0	-
#Deleted in new
chr3	75443507	75443646	ENSG00000272690.5|LINC02018|lncRNA|chr3:75443507:75443646:+	0	+
#Deleted in new
chr3	75451209	75451402	ENSG00000272690.5|LINC02018|lncRNA|chr3:75451209:75451402:+	0	+
#Deleted in new
chr3	75452196	75452658	ENSG00000272690.5|LINC02018|lncRNA|chr3:75452196:75452658:+	0	+
#Deleted in new
chr3	75452531	75452651	ENSG00000272690.5|LINC02018|lncRNA|chr3:75452531:75452651:+	0	+
#Deleted in new
chr3	75456616	75457486	ENSG00000272690.5|LINC02018|lncRNA|chr3:75456616:75457486:+	0	+
#Deleted in new
chr3	7560282	7560333	ENSG00000236202.1|GRM7-AS1|lncRNA|chr3:7560282:7560333:-	0	-
#Deleted in new
chr3	7561417	7561573	ENSG00000196277.15|GRM7|pc|chr3:7561417:7561573:+	0	+
#Deleted in new
chr3	75664329	75664557	ENSG00000172969.7|FRG2C|pc|chr3:75664329:75664557:+	0	+
#Deleted in new
chr3	75664818	75664896	ENSG00000172969.7|FRG2C|pc|chr3:75664818:75664896:+	0	+
#Deleted in new
chr3	75664821	75664896	ENSG00000172969.7|FRG2C|pc|chr3:75664821:75664896:+	0	+
#Partially deleted in new
chr3	75665526	75667220	ENSG00000172969.7|FRG2C|pc|chr3:75665526:75667220:+	0	+
#Deleted in new
chr3	75672390	75672769	ENSG00000242516.1|LINC00960|lncRNA|chr3:75672390:75672769:+	0	+
#Deleted in new
chr3	75673193	75673238	ENSG00000242516.1|LINC00960|lncRNA|chr3:75673193:75673238:+	0	+
#Deleted in new
chr3	75673846	75674006	ENSG00000242516.1|LINC00960|lncRNA|chr3:75673846:75674006:+	0	+
#Deleted in new
chr3	75674412	75675880	ENSG00000242516.1|LINC00960|lncRNA|chr3:75674412:75675880:+	0	+
#Deleted in new
chr3	75675763	75675880	ENSG00000242516.1|LINC00960|lncRNA|chr3:75675763:75675880:+	0	+
#Deleted in new
chr3	75675967	75676128	ENSG00000242516.1|LINC00960|lncRNA|chr3:75675967:75676128:+	0	+
#Deleted in new
chr3	75675967	75676625	ENSG00000242516.1|LINC00960|lncRNA|chr3:75675967:75676625:+	0	+
#Deleted in new
chr3	75678832	75679303	ENSG00000242516.1|LINC00960|lncRNA|chr3:75678832:75679303:+	0	+
#Deleted in new
chr3	75709642	75711316	ENSG00000227124.8|ZNF717|pc|chr3:75709642:75711316:-	0	-
#Deleted in new
chr3	75716418	75716541	ENSG00000227124.8|ZNF717|pc|chr3:75716418:75716541:-	0	-
#Deleted in new
chr3	75729960	75730618	ENSG00000227124.8|ZNF717|pc|chr3:75729960:75730618:-	0	-
#Deleted in new
chr3	75732059	75732121	ENSG00000227124.8|ZNF717|pc|chr3:75732059:75732121:-	0	-
#Duplicated in new
chr3	75741609	75741865	ENSG00000227124.8|ZNF717|pc|chr3:75741609:75741865:-	0	-
#Deleted in new
chr3	75783305	75783364	ENSG00000227124.8|ZNF717|pc|chr3:75783305:75783364:-	0	-
#Deleted in new
chr3	75784783	75785058	ENSG00000227124.8|ZNF717|pc|chr3:75784783:75785058:-	0	-
#Deleted in new
chr3	75784914	75785002	ENSG00000227124.8|ZNF717|pc|chr3:75784914:75785002:-	0	-
#Deleted in new
chr3	75785383	75785519	ENSG00000227124.8|ZNF717|pc|chr3:75785383:75785519:-	0	-
#Deleted in new
chr3	75785383	75785553	ENSG00000227124.8|ZNF717|pc|chr3:75785383:75785553:-	0	-
#Deleted in new
chr3	75785383	75785567	ENSG00000227124.8|ZNF717|pc|chr3:75785383:75785567:-	0	-
#Deleted in new
chr3	75785383	75785583	ENSG00000227124.8|ZNF717|pc|chr3:75785383:75785583:-	0	-
#Deleted in new
chr3	7606889	7607897	ENSG00000270207.1|AC068313.1|lncRNA|chr3:7606889:7607897:-	0	-
#Deleted in new
chr3	7608001	7608094	ENSG00000196277.15|GRM7|pc|chr3:7608001:7608094:+	0	+
#Deleted in new
chr3	7636252	7636441	ENSG00000196277.15|GRM7|pc|chr3:7636252:7636441:+	0	+
#Deleted in new
chr3	78087403	78087638	ENSG00000240573.1|AC117462.1|lncRNA|chr3:78087403:78087638:+	0	+
#Partially deleted in new
chr3	78092122	78092270	ENSG00000240573.1|AC117462.1|lncRNA|chr3:78092122:78092270:+	0	+
#Deleted in new
chr3	78266939	78267067	ENSG00000240241.5|AC108752.1|lncRNA|chr3:78266939:78267067:+	0	+
#Deleted in new
chr3	78266942	78267067	ENSG00000240241.5|AC108752.1|lncRNA|chr3:78266942:78267067:+	0	+
#Deleted in new
chr3	78267005	78267067	ENSG00000240241.5|AC108752.1|lncRNA|chr3:78267005:78267067:+	0	+
#Deleted in new
chr3	78280493	78280547	ENSG00000240241.5|AC108752.1|lncRNA|chr3:78280493:78280547:+	0	+
#Deleted in new
chr3	78290797	78291191	ENSG00000240241.5|AC108752.1|lncRNA|chr3:78290797:78291191:+	0	+
#Deleted in new
chr3	78607245	78607289	ENSG00000169855.19|ROBO1|pc|chr3:78607245:78607289:-	0	-
#Deleted in new
chr3	79527820	79527887	ENSG00000169855.19|ROBO1|pc|chr3:79527820:79527887:-	0	-
#Deleted in new
chr3	79533013	79533109	ENSG00000169855.19|ROBO1|pc|chr3:79533013:79533109:-	0	-
#Deleted in new
chr3	8015876	8016307	ENSG00000227110.6|LMCD1-AS1|lncRNA|chr3:8015876:8016307:-	0	-
#Deleted in new
chr3	80761041	80761205	ENSG00000242828.1|AC068756.1|lncRNA|chr3:80761041:80761205:-	0	-
#Deleted in new
chr3	80761457	80761573	ENSG00000242828.1|AC068756.1|lncRNA|chr3:80761457:80761573:-	0	-
#Deleted in new
chr3	80764896	80765087	ENSG00000242781.1|LINC02050|lncRNA|chr3:80764896:80765087:+	0	+
#Deleted in new
chr3	80780092	80780245	ENSG00000242781.1|LINC02050|lncRNA|chr3:80780092:80780245:+	0	+
#Deleted in new
chr3	80788796	80788969	ENSG00000242781.1|LINC02050|lncRNA|chr3:80788796:80788969:+	0	+
#Deleted in new
chr3	80788840	80788963	ENSG00000242828.1|AC068756.1|lncRNA|chr3:80788840:80788963:-	0	-
#Deleted in new
chr3	80789236	80789354	ENSG00000242781.1|LINC02050|lncRNA|chr3:80789236:80789354:+	0	+
#Deleted in new
chr3	8089486	8089552	ENSG00000228351.1|AC018832.1|lncRNA|chr3:8089486:8089552:+	0	+
#Deleted in new
chr3	8097119	8097211	ENSG00000228351.1|AC018832.1|lncRNA|chr3:8097119:8097211:+	0	+
#Deleted in new
chr3	8107111	8107205	ENSG00000228351.1|AC018832.1|lncRNA|chr3:8107111:8107205:+	0	+
#Deleted in new
chr3	81208192	81208405	ENSG00000242145.1|AC099542.2|lncRNA|chr3:81208192:81208405:-	0	-
#Deleted in new
chr3	81208574	81208914	ENSG00000242145.1|AC099542.2|lncRNA|chr3:81208574:81208914:-	0	-
#Deleted in new
chr3	81252131	81252245	ENSG00000241593.5|AC099542.1|lncRNA|chr3:81252131:81252245:-	0	-
#Deleted in new
chr3	81255362	81255529	ENSG00000241593.5|AC099542.1|lncRNA|chr3:81255362:81255529:-	0	-
#Deleted in new
chr3	81288078	81288224	ENSG00000241593.5|AC099542.1|lncRNA|chr3:81288078:81288224:-	0	-
#Deleted in new
chr3	81297241	81297345	ENSG00000241593.5|AC099542.1|lncRNA|chr3:81297241:81297345:-	0	-
#Deleted in new
chr3	81764659	81764756	ENSG00000242190.1|AC017015.2|lncRNA|chr3:81764659:81764756:-	0	-
#Deleted in new
chr3	8194248	8195073	ENSG00000227110.6|LMCD1-AS1|lncRNA|chr3:8194248:8195073:-	0	-
#Deleted in new
chr3	81986137	81986381	ENSG00000239440.5|LINC02008|lncRNA|chr3:81986137:81986381:+	0	+
#Deleted in new
chr3	81986151	81986381	ENSG00000239440.5|LINC02008|lncRNA|chr3:81986151:81986381:+	0	+
#Deleted in new
chr3	82453481	82453552	ENSG00000239440.5|LINC02008|lncRNA|chr3:82453481:82453552:+	0	+
#Deleted in new
chr3	82454385	82454510	ENSG00000239440.5|LINC02008|lncRNA|chr3:82454385:82454510:+	0	+
#Deleted in new
chr3	82455671	82455815	ENSG00000239440.5|LINC02008|lncRNA|chr3:82455671:82455815:+	0	+
#Deleted in new
chr3	82457950	82458147	ENSG00000239440.5|LINC02008|lncRNA|chr3:82457950:82458147:+	0	+
#Deleted in new
chr3	82462915	82463675	ENSG00000239440.5|LINC02008|lncRNA|chr3:82462915:82463675:+	0	+
#Deleted in new
chr3	827006	827133	ENSG00000224957.5|LINC01266|lncRNA|chr3:827006:827133:+	0	+
#Deleted in new
chr3	842375	842644	ENSG00000224957.5|LINC01266|lncRNA|chr3:842375:842644:+	0	+
#Split in new
chr3	84638405	84639212	ENSG00000242641.5|LINC00971|lncRNA|chr3:84638405:84639212:-	0	-
#Deleted in new
chr3	84644212	84644286	ENSG00000242641.5|LINC00971|lncRNA|chr3:84644212:84644286:-	0	-
#Partially deleted in new
chr3	84666399	84669856	ENSG00000242641.5|LINC00971|lncRNA|chr3:84666399:84669856:-	0	-
#Deleted in new
chr3	84671583	84671703	ENSG00000242641.5|LINC00971|lncRNA|chr3:84671583:84671703:-	0	-
#Partially deleted in new
chr3	84672620	84672905	ENSG00000242641.5|LINC00971|lncRNA|chr3:84672620:84672905:-	0	-
#Deleted in new
chr3	84685639	84685780	ENSG00000242641.5|LINC00971|lncRNA|chr3:84685639:84685780:-	0	-
#Deleted in new
chr3	84695364	84695515	ENSG00000242641.5|LINC00971|lncRNA|chr3:84695364:84695515:-	0	-
#Deleted in new
chr3	84695709	84695882	ENSG00000242641.5|LINC00971|lncRNA|chr3:84695709:84695882:-	0	-
#Deleted in new
chr3	84696157	84696341	ENSG00000242641.5|LINC00971|lncRNA|chr3:84696157:84696341:-	0	-
#Deleted in new
chr3	84789637	84789772	ENSG00000242641.5|LINC00971|lncRNA|chr3:84789637:84789772:-	0	-
#Deleted in new
chr3	84792167	84792291	ENSG00000242641.5|LINC00971|lncRNA|chr3:84792167:84792291:-	0	-
#Deleted in new
chr3	84802448	84802752	ENSG00000242641.5|LINC00971|lncRNA|chr3:84802448:84802752:-	0	-
#Deleted in new
chr3	84859814	84859923	ENSG00000242641.5|LINC00971|lncRNA|chr3:84859814:84859923:-	0	-
#Deleted in new
chr3	84862722	84862821	ENSG00000242641.5|LINC00971|lncRNA|chr3:84862722:84862821:-	0	-
#Deleted in new
chr3	84863215	84863436	ENSG00000242641.5|LINC00971|lncRNA|chr3:84863215:84863436:-	0	-
#Deleted in new
chr3	84863705	84864005	ENSG00000242641.5|LINC00971|lncRNA|chr3:84863705:84864005:-	0	-
#Deleted in new
chr3	84868127	84868255	ENSG00000242641.5|LINC00971|lncRNA|chr3:84868127:84868255:-	0	-
#Deleted in new
chr3	84868597	84868668	ENSG00000242641.5|LINC00971|lncRNA|chr3:84868597:84868668:-	0	-
#Deleted in new
chr3	84868781	84868843	ENSG00000242641.5|LINC00971|lncRNA|chr3:84868781:84868843:-	0	-
#Deleted in new
chr3	84868902	84869024	ENSG00000242641.5|LINC00971|lncRNA|chr3:84868902:84869024:-	0	-
#Deleted in new
chr3	84869277	84869575	ENSG00000242641.5|LINC00971|lncRNA|chr3:84869277:84869575:-	0	-
#Deleted in new
chr3	84869590	84869628	ENSG00000242641.5|LINC00971|lncRNA|chr3:84869590:84869628:-	0	-
#Partially deleted in new
chr3	84881488	84881679	ENSG00000242641.5|LINC00971|lncRNA|chr3:84881488:84881679:-	0	-
#Deleted in new
chr3	84884935	84885123	ENSG00000242339.1|LINC02025|lncRNA|chr3:84884935:84885123:+	0	+
#Deleted in new
chr3	857123	857273	ENSG00000224239.1|AC090044.1|lncRNA|chr3:857123:857273:+	0	+
#Deleted in new
chr3	857744	858091	ENSG00000224239.1|AC090044.1|lncRNA|chr3:857744:858091:+	0	+
#Deleted in new
chr3	85799986	85800423	ENSG00000241648.1|CADM2-AS2|lncRNA|chr3:85799986:85800423:-	0	-
#Deleted in new
chr3	85805453	85805585	ENSG00000241648.1|CADM2-AS2|lncRNA|chr3:85805453:85805585:-	0	-
#Deleted in new
chr3	85828000	85828050	ENSG00000241648.1|CADM2-AS2|lncRNA|chr3:85828000:85828050:-	0	-
#Partially deleted in new
chr3	8592712	8593124	ENSG00000224884.1|AC034187.1|lncRNA|chr3:8592712:8593124:-	0	-
#Deleted in new
chr3	85992182	85994714	ENSG00000239519.1|CADM2-AS1|lncRNA|chr3:85992182:85994714:-	0	-
#Partially deleted in new
chr3	86027883	86028007	ENSG00000239519.1|CADM2-AS1|lncRNA|chr3:86027883:86028007:-	0	-
#Deleted in new
chr3	8609437	8609592	ENSG00000227110.6|LMCD1-AS1|lncRNA|chr3:8609437:8609592:-	0	-
#Deleted in new
chr3	8611122	8611359	ENSG00000227110.6|LMCD1-AS1|lncRNA|chr3:8611122:8611359:-	0	-
#Deleted in new
chr3	8611227	8611359	ENSG00000227110.6|LMCD1-AS1|lncRNA|chr3:8611227:8611359:-	0	-
#Deleted in new
chr3	8611493	8611639	ENSG00000227110.6|LMCD1-AS1|lncRNA|chr3:8611493:8611639:-	0	-
#Deleted in new
chr3	8611857	8611900	ENSG00000227110.6|LMCD1-AS1|lncRNA|chr3:8611857:8611900:-	0	-
#Deleted in new
chr3	8611857	8611924	ENSG00000227110.6|LMCD1-AS1|lncRNA|chr3:8611857:8611924:-	0	-
#Deleted in new
chr3	86264554	86264893	ENSG00000239767.1|AC108733.1|lncRNA|chr3:86264554:86264893:-	0	-
#Deleted in new
chr3	86266995	86267361	ENSG00000239767.1|AC108733.1|lncRNA|chr3:86266995:86267361:-	0	-
#Partially deleted in new
chr3	8633880	8633995	ENSG00000125046.14|SSUH2|pc|chr3:8633880:8633995:-	0	-
#Deleted in new
chr3	8639947	8640015	ENSG00000125046.14|SSUH2|pc|chr3:8639947:8640015:-	0	-
#Deleted in new
chr3	8639947	8640069	ENSG00000125046.14|SSUH2|pc|chr3:8639947:8640069:-	0	-
#Deleted in new
chr3	86481942	86482057	ENSG00000241328.1|LINC02070|lncRNA|chr3:86481942:86482057:+	0	+
#Deleted in new
chr3	8651989	8652061	ENSG00000125046.14|SSUH2|pc|chr3:8651989:8652061:-	0	-
#Deleted in new
chr3	8651989	8652074	ENSG00000125046.14|SSUH2|pc|chr3:8651989:8652074:-	0	-
#Deleted in new
chr3	8658924	8658966	ENSG00000125046.14|SSUH2|pc|chr3:8658924:8658966:-	0	-
#Deleted in new
chr3	8658924	8659013	ENSG00000125046.14|SSUH2|pc|chr3:8658924:8659013:-	0	-
#Deleted in new
chr3	8670997	8671153	ENSG00000125046.14|SSUH2|pc|chr3:8670997:8671153:-	0	-
#Deleted in new
chr3	8671893	8672035	ENSG00000125046.14|SSUH2|pc|chr3:8671893:8672035:-	0	-
#Deleted in new
chr3	8677205	8677352	ENSG00000125046.14|SSUH2|pc|chr3:8677205:8677352:-	0	-
#Deleted in new
chr3	8677205	8677353	ENSG00000125046.14|SSUH2|pc|chr3:8677205:8677353:-	0	-
#Deleted in new
chr3	8677205	8677403	ENSG00000125046.14|SSUH2|pc|chr3:8677205:8677403:-	0	-
#Deleted in new
chr3	8677205	8677408	ENSG00000125046.14|SSUH2|pc|chr3:8677205:8677408:-	0	-
#Deleted in new
chr3	8679704	8679849	ENSG00000125046.14|SSUH2|pc|chr3:8679704:8679849:-	0	-
#Deleted in new
chr3	8681890	8682071	ENSG00000125046.14|SSUH2|pc|chr3:8681890:8682071:-	0	-
#Deleted in new
chr3	8681890	8682079	ENSG00000125046.14|SSUH2|pc|chr3:8681890:8682079:-	0	-
#Deleted in new
chr3	86876387	86877088	ENSG00000206538.8|VGLL3|pc|chr3:86876387:86877088:-	0	-
#Deleted in new
chr3	86906018	86906154	ENSG00000206538.8|VGLL3|pc|chr3:86906018:86906154:-	0	-
#Deleted in new
chr3	8690634	8690992	ENSG00000125046.14|SSUH2|pc|chr3:8690634:8690992:-	0	-
#Deleted in new
chr3	87089128	87089607	ENSG00000281392.1|LINC00506|lncRNA|chr3:87089128:87089607:+	0	+
#Deleted in new
chr3	87089279	87089607	ENSG00000281392.1|LINC00506|lncRNA|chr3:87089279:87089607:+	0	+
#Deleted in new
chr3	87089302	87089607	ENSG00000281392.1|LINC00506|lncRNA|chr3:87089302:87089607:+	0	+
#Deleted in new
chr3	87089360	87089607	ENSG00000281392.1|LINC00506|lncRNA|chr3:87089360:87089607:+	0	+
#Deleted in new
chr3	87094730	87098702	ENSG00000281392.1|LINC00506|lncRNA|chr3:87094730:87098702:+	0	+
#Deleted in new
chr3	87136184	87136324	ENSG00000281392.1|LINC00506|lncRNA|chr3:87136184:87136324:+	0	+
#Deleted in new
chr3	87140272	87140346	ENSG00000281392.1|LINC00506|lncRNA|chr3:87140272:87140346:+	0	+
#Deleted in new
chr3	87140272	87140352	ENSG00000281392.1|LINC00506|lncRNA|chr3:87140272:87140352:+	0	+
#Partially deleted in new
chr3	87154337	87154399	ENSG00000281392.1|LINC00506|lncRNA|chr3:87154337:87154399:+	0	+
#Partially deleted in new
chr3	8715601	8715886	ENSG00000125046.14|SSUH2|pc|chr3:8715601:8715886:-	0	-
#Partially deleted in new
chr3	87156791	87157069	ENSG00000281392.1|LINC00506|lncRNA|chr3:87156791:87157069:+	0	+
#Deleted in new
chr3	87240322	87240453	ENSG00000083937.8|CHMP2B|pc|chr3:87240322:87240453:+	0	+
#Deleted in new
chr3	8744849	8745036	ENSG00000125046.14|SSUH2|pc|chr3:8744849:8745036:-	0	-
#Deleted in new
chr3	8744849	8745040	ENSG00000125046.14|SSUH2|pc|chr3:8744849:8745040:-	0	-
#Deleted in new
chr3	87731401	87731750	ENSG00000239572.1|AC117513.1|lncRNA|chr3:87731401:87731750:-	0	-
#Partially deleted in new
chr3	88150603	88151072	ENSG00000179021.9|C3orf38|pc|chr3:88150603:88151072:+	0	+
#Deleted in new
chr3	88168353	88168729	ENSG00000179021.9|C3orf38|pc|chr3:88168353:88168729:+	0	+
#Deleted in new
chr3	88343151	88343285	ENSG00000283434.1|AC108750.1|pc|chr3:88343151:88343285:+	0	+
#Deleted in new
chr3	9006962	9008347	ENSG00000196220.15|SRGAP3|pc|chr3:9006962:9008347:-	0	-
#Deleted in new
chr3	9006978	9008347	ENSG00000196220.15|SRGAP3|pc|chr3:9006978:9008347:-	0	-
#Deleted in new
chr3	9014741	9014841	ENSG00000196220.15|SRGAP3|pc|chr3:9014741:9014841:-	0	-
#Partially deleted in new
chr3	9065293	9065530	ENSG00000196220.15|SRGAP3|pc|chr3:9065293:9065530:-	0	-
#Deleted in new
chr3	9081255	9081287	ENSG00000196220.15|SRGAP3|pc|chr3:9081255:9081287:-	0	-
#Partially deleted in new
chr3	9217361	9217476	ENSG00000227929.4|SRGAP3-AS3|lncRNA|chr3:9217361:9217476:+	0	+
#Deleted in new
chr3	9219208	9219356	ENSG00000227929.4|SRGAP3-AS3|lncRNA|chr3:9219208:9219356:+	0	+
#Deleted in new
chr3	9219466	9219508	ENSG00000227929.4|SRGAP3-AS3|lncRNA|chr3:9219466:9219508:+	0	+
#Deleted in new
chr3	9326009	9326168	ENSG00000196220.15|SRGAP3|pc|chr3:9326009:9326168:-	0	-
#Deleted in new
chr3	9326009	9326168	ENSG00000254485.5|AC026191.1|lncRNA|chr3:9326009:9326168:-	0	-
#Deleted in new
chr3	9330527	9330596	ENSG00000196220.15|SRGAP3|pc|chr3:9330527:9330596:-	0	-
#Deleted in new
chr3	9337601	9337677	ENSG00000254485.5|AC026191.1|lncRNA|chr3:9337601:9337677:-	0	-
#Deleted in new
chr3	9355771	9355859	ENSG00000254485.5|AC026191.1|lncRNA|chr3:9355771:9355859:-	0	-
#Deleted in new
chr3	9355800	9355859	ENSG00000254485.5|AC026191.1|lncRNA|chr3:9355800:9355859:-	0	-
#Deleted in new
chr3	9363834	9364038	ENSG00000134077.15|THUMPD3|pc|chr3:9363834:9364038:+	0	+
#Deleted in new
chr3	9388086	9388127	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9388086:9388127:-	0	-
#Deleted in new
chr3	9388848	9390497	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9388848:9390497:-	0	-
#Deleted in new
chr3	9388882	9390497	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9388882:9390497:-	0	-
#Deleted in new
chr3	9389359	9389796	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9389359:9389796:-	0	-
#Deleted in new
chr3	9389491	9389796	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9389491:9389796:-	0	-
#Deleted in new
chr3	9389510	9389796	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9389510:9389796:-	0	-
#Deleted in new
chr3	9389698	9389796	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9389698:9389796:-	0	-
#Deleted in new
chr3	9389914	9390497	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9389914:9390497:-	0	-
#Deleted in new
chr3	9390087	9390497	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9390087:9390497:-	0	-
#Deleted in new
chr3	9390137	9390497	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9390137:9390497:-	0	-
#Deleted in new
chr3	9390279	9390497	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9390279:9390497:-	0	-
#Deleted in new
chr3	9390289	9390497	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9390289:9390497:-	0	-
#Deleted in new
chr3	9390289	9390619	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9390289:9390619:-	0	-
#Deleted in new
chr3	9391311	9391826	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9391311:9391826:-	0	-
#Deleted in new
chr3	9391346	9391826	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9391346:9391826:-	0	-
#Deleted in new
chr3	9391364	9391826	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9391364:9391826:-	0	-
#Deleted in new
chr3	9391380	9391826	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9391380:9391826:-	0	-
#Deleted in new
chr3	9391426	9391822	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9391426:9391822:-	0	-
#Deleted in new
chr3	9391426	9391826	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9391426:9391826:-	0	-
#Deleted in new
chr3	9391659	9391826	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9391659:9391826:-	0	-
#Deleted in new
chr3	9391678	9391826	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9391678:9391826:-	0	-
#Deleted in new
chr3	9391704	9391826	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9391704:9391826:-	0	-
#Deleted in new
chr3	9391719	9391826	ENSG00000206573.8|THUMPD3-AS1|lncRNA|chr3:9391719:9391826:-	0	-
#Deleted in new
chr3	93958510	93958754	ENSG00000184500.14|PROS1|pc|chr3:93958510:93958754:-	0	-
#Deleted in new
chr3	93996547	93996684	ENSG00000169379.15|ARL13B|pc|chr3:93996547:93996684:+	0	+
#Deleted in new
chr3	93996562	93996684	ENSG00000169379.15|ARL13B|pc|chr3:93996562:93996684:+	0	+
#Split in new
chr3	94057921	94061606	ENSG00000178700.7|DHFR2|pc|chr3:94057921:94061606:-	0	-
#Split in new
chr3	94057923	94061606	ENSG00000178700.7|DHFR2|pc|chr3:94057923:94061606:-	0	-
#Duplicated in new
chr3	94061413	94061606	ENSG00000178700.7|DHFR2|pc|chr3:94061413:94061606:-	0	-
#Deleted in new
chr3	94062745	94062841	ENSG00000178700.7|DHFR2|pc|chr3:94062745:94062841:-	0	-
#Partially deleted in new
chr3	94062745	94062987	ENSG00000178700.7|DHFR2|pc|chr3:94062745:94062987:-	0	-
#Deleted in new
chr3	94062868	94062899	ENSG00000178700.7|DHFR2|pc|chr3:94062868:94062899:-	0	-
#Deleted in new
chr3	94063236	94063389	ENSG00000178700.7|DHFR2|pc|chr3:94063236:94063389:-	0	-
#Deleted in new
chr3	94063811	94063979	ENSG00000178694.9|NSUN3|pc|chr3:94063811:94063979:+	0	+
#Deleted in new
chr3	94063811	94064124	ENSG00000178694.9|NSUN3|pc|chr3:94063811:94064124:+	0	+
#Partially deleted in new
chr3	94063811	94064403	ENSG00000178694.9|NSUN3|pc|chr3:94063811:94064403:+	0	+
#Deleted in new
chr3	94081608	94081821	ENSG00000178694.9|NSUN3|pc|chr3:94081608:94081821:+	0	+
#Deleted in new
chr3	94081608	94082173	ENSG00000178694.9|NSUN3|pc|chr3:94081608:94082173:+	0	+
#Partially deleted in new
chr3	9423210	9423257	ENSG00000168137.15|SETD5|pc|chr3:9423210:9423257:+	0	+
#Deleted in new
chr3	9478600	9479240	ENSG00000168137.15|SETD5|pc|chr3:9478600:9479240:+	0	+
#Deleted in new
chr3	94971270	94971354	ENSG00000239589.5|LINC00879|lncRNA|chr3:94971270:94971354:+	0	+
#Deleted in new
chr3	94980369	94980539	ENSG00000239589.5|LINC00879|lncRNA|chr3:94980369:94980539:+	0	+
#Deleted in new
chr3	94988545	94988679	ENSG00000239589.5|LINC00879|lncRNA|chr3:94988545:94988679:+	0	+
#Deleted in new
chr3	94989328	94989434	ENSG00000239589.5|LINC00879|lncRNA|chr3:94989328:94989434:+	0	+
#Deleted in new
chr3	94989902	94990070	ENSG00000239589.5|LINC00879|lncRNA|chr3:94989902:94990070:+	0	+
#Deleted in new
chr3	95088157	95088294	ENSG00000239589.5|LINC00879|lncRNA|chr3:95088157:95088294:+	0	+
#Deleted in new
chr3	95138185	95138315	ENSG00000239589.5|LINC00879|lncRNA|chr3:95138185:95138315:+	0	+
#Deleted in new
chr3	95138225	95138315	ENSG00000239589.5|LINC00879|lncRNA|chr3:95138225:95138315:+	0	+
#Deleted in new
chr3	95152029	95152302	ENSG00000239589.5|LINC00879|lncRNA|chr3:95152029:95152302:+	0	+
#Deleted in new
chr3	95152029	95152509	ENSG00000239589.5|LINC00879|lncRNA|chr3:95152029:95152509:+	0	+
#Deleted in new
chr3	9659625	9659809	ENSG00000163719.19|MTMR14|pc|chr3:9659625:9659809:+	0	+
#Deleted in new
chr3	9675513	9675671	ENSG00000163719.19|MTMR14|pc|chr3:9675513:9675671:+	0	+
#Partially deleted in new
chr3	9683177	9683728	ENSG00000163719.19|MTMR14|pc|chr3:9683177:9683728:+	0	+
#Deleted in new
chr3	97010003	97010134	ENSG00000080224.17|EPHA6|pc|chr3:97010003:97010134:+	0	+
#Partially deleted in new
chr3	9727346	9727441	ENSG00000144550.12|CPNE9|pc|chr3:9727346:9727441:+	0	+
#Partially deleted in new
chr3	9727346	9727450	ENSG00000144550.12|CPNE9|pc|chr3:9727346:9727450:+	0	+
#Deleted in new
chr3	97439609	97439657	ENSG00000080224.17|EPHA6|pc|chr3:97439609:97439657:+	0	+
#Deleted in new
chr3	97439629	97439657	ENSG00000080224.17|EPHA6|pc|chr3:97439629:97439657:+	0	+
#Deleted in new
chr3	97447717	97447833	ENSG00000080224.17|EPHA6|pc|chr3:97447717:97447833:+	0	+
#Deleted in new
chr3	97559590	97559661	ENSG00000080224.17|EPHA6|pc|chr3:97559590:97559661:+	0	+
#Deleted in new
chr3	97606159	97606248	ENSG00000080224.17|EPHA6|pc|chr3:97606159:97606248:+	0	+
#Deleted in new
chr3	97745358	97745563	ENSG00000080224.17|EPHA6|pc|chr3:97745358:97745563:+	0	+
#Partially deleted in new
chr3	97791213	97791347	ENSG00000113966.9|ARL6|pc|chr3:97791213:97791347:+	0	+
#Deleted in new
chr3	9781512	9781600	ENSG00000114026.21|OGG1|pc|chr3:9781512:9781600:+	0	+
#Deleted in new
chr3	97840655	97840697	ENSG00000279658.1|AC110491.2|lncRNA|chr3:97840655:97840697:-	0	-
#Deleted in new
chr3	97867052	97867169	ENSG00000279658.1|AC110491.2|lncRNA|chr3:97867052:97867169:-	0	-
#Deleted in new
chr3	97924211	97924411	ENSG00000080200.9|CRYBG3|pc|chr3:97924211:97924411:+	0	+
#Deleted in new
chr3	97971589	97971877	ENSG00000170854.17|RIOX2|pc|chr3:97971589:97971877:-	0	-
#Deleted in new
chr3	97971913	97972087	ENSG00000170854.17|RIOX2|pc|chr3:97971913:97972087:-	0	-
#Deleted in new
chr3	97971913	97972457	ENSG00000170854.17|RIOX2|pc|chr3:97971913:97972457:-	0	-
#Deleted in new
chr3	97972380	97972451	ENSG00000170854.17|RIOX2|pc|chr3:97972380:97972451:-	0	-
#Deleted in new
chr3	9799878	9800067	ENSG00000241553.12|ARPC4|pc|chr3:9799878:9800067:+	0	+
#Deleted in new
chr3	9808085	9808138	ENSG00000214021.15|TTLL3|pc|chr3:9808085:9808138:+	0	+
#Deleted in new
chr3	98099907	98100280	ENSG00000249225.1|AC117460.1|lncRNA|chr3:98099907:98100280:-	0	-
#Split in new
chr3	98132679	98138548	ENSG00000231192.2|OR5H1|pc|chr3:98132679:98138548:+	0	+
#Deleted in new
chr3	98147478	98147554	ENSG00000236032.3|OR5H14|pc|chr3:98147478:98147554:+	0	+
#Deleted in new
chr3	98148040	98148134	ENSG00000249225.1|AC117460.1|lncRNA|chr3:98148040:98148134:-	0	-
#Split in new
chr3	98149367	98156614	ENSG00000236032.3|OR5H14|pc|chr3:98149367:98156614:+	0	+
#Deleted in new
chr3	98233650	98233676	ENSG00000251088.1|AC117473.1|lncRNA|chr3:98233650:98233676:+	0	+
#Deleted in new
chr3	98342390	98342429	ENSG00000251088.1|AC117473.1|lncRNA|chr3:98342390:98342429:+	0	+
#Partially deleted in new
chr3	9841256	9842082	ENSG00000156990.14|RPUSD3|pc|chr3:9841256:9842082:-	0	-
#Partially deleted in new
chr3	9841407	9842082	ENSG00000156990.14|RPUSD3|pc|chr3:9841407:9842082:-	0	-
#Partially deleted in new
chr3	9841982	9843571	ENSG00000156990.14|RPUSD3|pc|chr3:9841982:9843571:-	0	-
#Deleted in new
chr3	9844501	9844602	ENSG00000156990.14|RPUSD3|pc|chr3:9844501:9844602:-	0	-
#Deleted in new
chr3	98457694	98457898	ENSG00000251088.1|AC117473.1|lncRNA|chr3:98457694:98457898:+	0	+
#Deleted in new
chr3	98562323	98562442	ENSG00000080819.6|CPOX|pc|chr3:98562323:98562442:-	0	-
#Deleted in new
chr3	98589661	98589756	ENSG00000080819.6|CPOX|pc|chr3:98589661:98589756:-	0	-
#Deleted in new
chr3	9870444	9870474	ENSG00000187288.10|CIDEC|pc|chr3:9870444:9870474:-	0	-
#Deleted in new
chr3	98714329	98714498	ENSG00000239445.5|ST3GAL6-AS1|lncRNA|chr3:98714329:98714498:-	0	-
#Deleted in new
chr3	98714331	98714498	ENSG00000239445.5|ST3GAL6-AS1|lncRNA|chr3:98714331:98714498:-	0	-
#Deleted in new
chr3	98715304	98715521	ENSG00000239445.5|ST3GAL6-AS1|lncRNA|chr3:98715304:98715521:-	0	-
#Deleted in new
chr3	98715375	98715521	ENSG00000239445.5|ST3GAL6-AS1|lncRNA|chr3:98715375:98715521:-	0	-
#Deleted in new
chr3	98715649	98715777	ENSG00000239445.5|ST3GAL6-AS1|lncRNA|chr3:98715649:98715777:-	0	-
#Deleted in new
chr3	98718418	98718521	ENSG00000239445.5|ST3GAL6-AS1|lncRNA|chr3:98718418:98718521:-	0	-
#Deleted in new
chr3	98718423	98718521	ENSG00000239445.5|ST3GAL6-AS1|lncRNA|chr3:98718423:98718521:-	0	-
#Duplicated in new
chr3	98783510	98783739	ENSG00000064225.12|ST3GAL6|pc|chr3:98783510:98783739:+	0	+
#Partially deleted in new
chr3	98793674	98795845	ENSG00000064225.12|ST3GAL6|pc|chr3:98793674:98795845:+	0	+
#Partially deleted in new
chr3	98801599	98801971	ENSG00000057019.15|DCBLD2|pc|chr3:98801599:98801971:-	0	-
#Deleted in new
chr3	98820787	98820997	ENSG00000064225.12|ST3GAL6|pc|chr3:98820787:98820997:+	0	+
#Deleted in new
chr3	98820787	98821201	ENSG00000064225.12|ST3GAL6|pc|chr3:98820787:98821201:+	0	+
#Deleted in new
chr3	98890391	98890456	ENSG00000057019.15|DCBLD2|pc|chr3:98890391:98890456:-	0	-
#Partially deleted in new
chr3	9935705	9936258	ENSG00000269894.1|AC018809.1|lncRNA|chr3:9935705:9936258:+	0	+
#Deleted in new
chr3	9943901	9944095	ENSG00000163703.17|CRELD1|pc|chr3:9943901:9944095:+	0	+
#Deleted in new
chr3	99500346	99500541	ENSG00000243296.1|AC078828.1|lncRNA|chr3:99500346:99500541:+	0	+
#Partially deleted in new
chr3	99505245	99505508	ENSG00000243296.1|AC078828.1|lncRNA|chr3:99505245:99505508:+	0	+
#Deleted in new
chr3	9954603	9954787	ENSG00000230082.1|PRRT3-AS1|lncRNA|chr3:9954603:9954787:+	0	+
#Deleted in new
chr3	9958716	9962539	ENSG00000269982.1|AC018809.2|lncRNA|chr3:9958716:9962539:+	0	+
#Deleted in new
chr3	99598063	99598499	ENSG00000244464.1|AC107029.2|lncRNA|chr3:99598063:99598499:+	0	+
#Deleted in new
chr3	99685432	99685539	ENSG00000144810.15|COL8A1|pc|chr3:99685432:99685539:+	0	+
#Partially deleted in new
chr3	9968643	9969801	ENSG00000125037.12|EMC3|pc|chr3:9968643:9969801:-	0	-
#Deleted in new
chr3	99703306	99703618	ENSG00000144810.15|COL8A1|pc|chr3:99703306:99703618:+	0	+
#Deleted in new
chr3	9978209	9978297	ENSG00000125037.12|EMC3|pc|chr3:9978209:9978297:-	0	-
#Partially deleted in new
chr3	99802698	99806058	ENSG00000273374.1|AC069222.1|lncRNA|chr3:99802698:99806058:-	0	-
#Deleted in new
chr3	9981633	9981747	ENSG00000125037.12|EMC3|pc|chr3:9981633:9981747:-	0	-
#Deleted in new
chr3	99898126	99898762	ENSG00000168386.18|FILIP1L|pc|chr3:99898126:99898762:-	0	-
#Deleted in new
chr4	100024938	100025080	ENSG00000245322.6|AC097460.1|lncRNA|chr4:100024938:100025080:+	0	+
#Deleted in new
chr4	10006481	10006692	ENSG00000250413.1|AC005674.1|lncRNA|chr4:10006481:10006692:+	0	+
#Deleted in new
chr4	10009477	10009725	ENSG00000250413.1|AC005674.1|lncRNA|chr4:10009477:10009725:+	0	+
#Deleted in new
chr4	100195064	100195099	ENSG00000245322.6|AC097460.1|lncRNA|chr4:100195064:100195099:+	0	+
#Deleted in new
chr4	10029017	10029300	ENSG00000109667.11|SLC2A9|pc|chr4:10029017:10029300:-	0	-
#Partially deleted in new
chr4	10034224	10036140	ENSG00000109667.11|SLC2A9|pc|chr4:10034224:10036140:-	0	-
#Deleted in new
chr4	100446019	100446247	ENSG00000164035.9|EMCN|pc|chr4:100446019:100446247:-	0	-
#Deleted in new
chr4	100473853	100474078	ENSG00000164035.9|EMCN|pc|chr4:100473853:100474078:-	0	-
#Deleted in new
chr4	100483376	100483458	ENSG00000164035.9|EMCN|pc|chr4:100483376:100483458:-	0	-
#Deleted in new
chr4	10054832	10054875	ENSG00000109667.11|SLC2A9|pc|chr4:10054832:10054875:-	0	-
#Deleted in new
chr4	10054832	10054936	ENSG00000109667.11|SLC2A9|pc|chr4:10054832:10054936:-	0	-
#Deleted in new
chr4	100570203	100570325	ENSG00000164035.9|EMCN|pc|chr4:100570203:100570325:-	0	-
#Deleted in new
chr4	10068088	10069824	ENSG00000261490.1|AC005674.2|lncRNA|chr4:10068088:10069824:-	0	-
#Deleted in new
chr4	10071245	10073019	ENSG00000261490.1|AC005674.2|lncRNA|chr4:10071245:10073019:-	0	-
#Deleted in new
chr4	100778581	100779077	ENSG00000251219.1|LINC01217|lncRNA|chr4:100778581:100779077:-	0	-
#Deleted in new
chr4	100812254	100812668	ENSG00000251636.1|LINC01218|lncRNA|chr4:100812254:100812668:-	0	-
#Deleted in new
chr4	100815967	100816082	ENSG00000164035.9|EMCN|pc|chr4:100815967:100816082:-	0	-
#Deleted in new
chr4	100880003	100880126	ENSG00000164035.9|EMCN|pc|chr4:100880003:100880126:-	0	-
#Deleted in new
chr4	10094682	10094896	ENSG00000071127.16|WDR1|pc|chr4:10094682:10094896:-	0	-
#Deleted in new
chr4	1009935	1010169	ENSG00000127418.14|FGFRL1|pc|chr4:1009935:1010169:+	0	+
#Deleted in new
chr4	1009978	1010169	ENSG00000127418.14|FGFRL1|pc|chr4:1009978:1010169:+	0	+
#Deleted in new
chr4	10108217	10108395	ENSG00000071127.16|WDR1|pc|chr4:10108217:10108395:-	0	-
#Partially deleted in new
chr4	1010923	1011296	ENSG00000127418.14|FGFRL1|pc|chr4:1010923:1011296:+	0	+
#Deleted in new
chr4	1010926	1011027	ENSG00000127418.14|FGFRL1|pc|chr4:1010926:1011027:+	0	+
#Deleted in new
chr4	101171083	101171226	ENSG00000138814.16|PPP3CA|pc|chr4:101171083:101171226:-	0	-
#Deleted in new
chr4	101411285	101411436	ENSG00000153064.11|BANK1|pc|chr4:101411285:101411436:+	0	+
#Deleted in new
chr4	101412178	101412349	ENSG00000153064.11|BANK1|pc|chr4:101412178:101412349:+	0	+
#Deleted in new
chr4	101427560	101427640	ENSG00000153064.11|BANK1|pc|chr4:101427560:101427640:+	0	+
#Deleted in new
chr4	101669402	101669523	ENSG00000153064.11|BANK1|pc|chr4:101669402:101669523:+	0	+
#Deleted in new
chr4	101671072	101671161	ENSG00000153064.11|BANK1|pc|chr4:101671072:101671161:+	0	+
#Deleted in new
chr4	101721363	101721433	ENSG00000153064.11|BANK1|pc|chr4:101721363:101721433:+	0	+
#Deleted in new
chr4	102032208	102032382	ENSG00000251309.1|AP002075.1|lncRNA|chr4:102032208:102032382:-	0	-
#Deleted in new
chr4	102251040	102253430	ENSG00000138821.12|SLC39A8|pc|chr4:102251040:102253430:-	0	-
#Deleted in new
chr4	102259454	102259514	ENSG00000138821.12|SLC39A8|pc|chr4:102259454:102259514:-	0	-
#Deleted in new
chr4	102431061	102431249	ENSG00000248161.5|AC098487.1|lncRNA|chr4:102431061:102431249:-	0	-
#Deleted in new
chr4	102431061	102431258	ENSG00000138821.12|SLC39A8|pc|chr4:102431061:102431258:-	0	-
#Deleted in new
chr4	102431061	102431282	ENSG00000248161.5|AC098487.1|lncRNA|chr4:102431061:102431282:-	0	-
#Deleted in new
chr4	102431061	102431290	ENSG00000248161.5|AC098487.1|lncRNA|chr4:102431061:102431290:-	0	-
#Duplicated in new
chr4	1024904	1025987	ENSG00000127418.14|FGFRL1|pc|chr4:1024904:1025987:+	0	+
#Duplicated in new
chr4	1024904	1026891	ENSG00000127418.14|FGFRL1|pc|chr4:1024904:1026891:+	0	+
#Duplicated in new
chr4	1024904	1026897	ENSG00000127418.14|FGFRL1|pc|chr4:1024904:1026897:+	0	+
#Deleted in new
chr4	102577863	102577975	ENSG00000109320.11|NFKB1|pc|chr4:102577863:102577975:+	0	+
#Split in new
chr4	102664684	102669049	ENSG00000109323.8|MANBA|pc|chr4:102664684:102669049:-	0	-
#Deleted in new
chr4	102690879	102690957	ENSG00000109323.8|MANBA|pc|chr4:102690879:102690957:-	0	-
#Deleted in new
chr4	102753690	102753995	ENSG00000109323.8|MANBA|pc|chr4:102753690:102753995:-	0	-
#Deleted in new
chr4	102753822	102753995	ENSG00000109323.8|MANBA|pc|chr4:102753822:102753995:-	0	-
#Partially deleted in new
chr4	102809791	102812973	ENSG00000109332.19|UBE2D3|pc|chr4:102809791:102812973:-	0	-
#Deleted in new
chr4	102810369	102810396	ENSG00000109332.19|UBE2D3|pc|chr4:102810369:102810396:-	0	-
#Deleted in new
chr4	102843323	102844075	ENSG00000246560.2|AC018797.2|lncRNA|chr4:102843323:102844075:+	0	+
#Deleted in new
chr4	1028806	1028972	ENSG00000250259.1|AC019103.1|lncRNA|chr4:1028806:1028972:+	0	+
#Deleted in new
chr4	102882770	102882873	ENSG00000145354.9|CISD2|pc|chr4:102882770:102882873:+	0	+
#Deleted in new
chr4	102890580	102890673	ENSG00000164037.16|SLC9B1|pc|chr4:102890580:102890673:-	0	-
#Deleted in new
chr4	102912007	102912129	ENSG00000164037.16|SLC9B1|pc|chr4:102912007:102912129:-	0	-
#Deleted in new
chr4	103014867	103014922	ENSG00000164037.16|SLC9B1|pc|chr4:103014867:103014922:-	0	-
#Deleted in new
chr4	103016704	103016983	ENSG00000164037.16|SLC9B1|pc|chr4:103016704:103016983:-	0	-
#Deleted in new
chr4	103019598	103019650	ENSG00000164037.16|SLC9B1|pc|chr4:103019598:103019650:-	0	-
#Deleted in new
chr4	103019598	103019661	ENSG00000164037.16|SLC9B1|pc|chr4:103019598:103019661:-	0	-
#Deleted in new
chr4	103019598	103019666	ENSG00000164037.16|SLC9B1|pc|chr4:103019598:103019666:-	0	-
#Deleted in new
chr4	103019598	103019682	ENSG00000164037.16|SLC9B1|pc|chr4:103019598:103019682:-	0	-
#Deleted in new
chr4	103019598	103019719	ENSG00000164037.16|SLC9B1|pc|chr4:103019598:103019719:-	0	-
#Deleted in new
chr4	103019598	103019739	ENSG00000164037.16|SLC9B1|pc|chr4:103019598:103019739:-	0	-
#Partially deleted in new
chr4	103025489	103026591	ENSG00000164038.14|SLC9B2|pc|chr4:103025489:103026591:-	0	-
#Deleted in new
chr4	103042044	103042391	ENSG00000164038.14|SLC9B2|pc|chr4:103042044:103042391:-	0	-
#Deleted in new
chr4	103076183	103076303	ENSG00000164038.14|SLC9B2|pc|chr4:103076183:103076303:-	0	-
#Deleted in new
chr4	103076183	103076332	ENSG00000164038.14|SLC9B2|pc|chr4:103076183:103076332:-	0	-
#Deleted in new
chr4	103076183	103076336	ENSG00000164038.14|SLC9B2|pc|chr4:103076183:103076336:-	0	-
#Deleted in new
chr4	103076183	103076773	ENSG00000164038.14|SLC9B2|pc|chr4:103076183:103076773:-	0	-
#Deleted in new
chr4	103076426	103076918	ENSG00000164038.14|SLC9B2|pc|chr4:103076426:103076918:-	0	-
#Deleted in new
chr4	103091619	103091737	ENSG00000164039.14|BDH2|pc|chr4:103091619:103091737:-	0	-
#Deleted in new
chr4	103097635	103097754	ENSG00000164039.14|BDH2|pc|chr4:103097635:103097754:-	0	-
#Deleted in new
chr4	103120147	103120333	ENSG00000138778.11|CENPE|pc|chr4:103120147:103120333:-	0	-
#Deleted in new
chr4	103120147	103120336	ENSG00000138778.11|CENPE|pc|chr4:103120147:103120336:-	0	-
#Deleted in new
chr4	103256158	103256294	ENSG00000248740.5|LINC02428|lncRNA|chr4:103256158:103256294:+	0	+
#Deleted in new
chr4	103436934	103437046	ENSG00000248740.5|LINC02428|lncRNA|chr4:103436934:103437046:+	0	+
#Deleted in new
chr4	103437717	103437842	ENSG00000248740.5|LINC02428|lncRNA|chr4:103437717:103437842:+	0	+
#Deleted in new
chr4	103438706	103438763	ENSG00000248740.5|LINC02428|lncRNA|chr4:103438706:103438763:+	0	+
#Deleted in new
chr4	103439624	103439728	ENSG00000248740.5|LINC02428|lncRNA|chr4:103439624:103439728:+	0	+
#Deleted in new
chr4	103439624	103439741	ENSG00000248740.5|LINC02428|lncRNA|chr4:103439624:103439741:+	0	+
#Deleted in new
chr4	103453599	103453658	ENSG00000248740.5|LINC02428|lncRNA|chr4:103453599:103453658:+	0	+
#Deleted in new
chr4	103548744	103548867	ENSG00000251577.5|AC105460.2|lncRNA|chr4:103548744:103548867:+	0	+
#Deleted in new
chr4	103550926	103551317	ENSG00000250920.1|AC105460.1|lncRNA|chr4:103550926:103551317:-	0	-
#Deleted in new
chr4	103552025	103552152	ENSG00000250920.1|AC105460.1|lncRNA|chr4:103552025:103552152:-	0	-
#Deleted in new
chr4	103552507	103552586	ENSG00000250920.1|AC105460.1|lncRNA|chr4:103552507:103552586:-	0	-
#Deleted in new
chr4	103552536	103552602	ENSG00000251577.5|AC105460.2|lncRNA|chr4:103552536:103552602:+	0	+
#Deleted in new
chr4	103558894	103559127	ENSG00000250920.1|AC105460.1|lncRNA|chr4:103558894:103559127:-	0	-
#Deleted in new
chr4	103961615	103961678	ENSG00000249614.1|LINC02503|lncRNA|chr4:103961615:103961678:+	0	+
#Deleted in new
chr4	103978406	103978523	ENSG00000249614.1|LINC02503|lncRNA|chr4:103978406:103978523:+	0	+
#Deleted in new
chr4	104036482	104036923	ENSG00000249614.1|LINC02503|lncRNA|chr4:104036482:104036923:+	0	+
#Deleted in new
chr4	104230379	104230492	ENSG00000251170.5|AC004052.1|lncRNA|chr4:104230379:104230492:+	0	+
#Deleted in new
chr4	104233776	104233832	ENSG00000251170.5|AC004052.1|lncRNA|chr4:104233776:104233832:+	0	+
#Deleted in new
chr4	104234235	104234284	ENSG00000251170.5|AC004052.1|lncRNA|chr4:104234235:104234284:+	0	+
#Deleted in new
chr4	104331401	104331450	ENSG00000251170.5|AC004052.1|lncRNA|chr4:104331401:104331450:+	0	+
#Deleted in new
chr4	104335710	104336033	ENSG00000251170.5|AC004052.1|lncRNA|chr4:104335710:104336033:+	0	+
#Deleted in new
chr4	104567541	104567734	ENSG00000250670.1|AC004063.1|lncRNA|chr4:104567541:104567734:+	0	+
#Partially deleted in new
chr4	10457133	10457176	ENSG00000178163.7|ZNF518B|pc|chr4:10457133:10457176:-	0	-
#Partially deleted in new
chr4	104643010	104643139	ENSG00000245384.1|CXXC4-AS1|lncRNA|chr4:104643010:104643139:+	0	+
#Deleted in new
chr4	104643320	104643402	ENSG00000245384.1|CXXC4-AS1|lncRNA|chr4:104643320:104643402:+	0	+
#Deleted in new
chr4	104646898	104646935	ENSG00000245384.1|CXXC4-AS1|lncRNA|chr4:104646898:104646935:+	0	+
#Deleted in new
chr4	104653873	104653921	ENSG00000248242.1|AC004053.1|lncRNA|chr4:104653873:104653921:-	0	-
#Partially deleted in new
chr4	104659084	104659206	ENSG00000245384.1|CXXC4-AS1|lncRNA|chr4:104659084:104659206:+	0	+
#Deleted in new
chr4	104666896	104667016	ENSG00000248242.1|AC004053.1|lncRNA|chr4:104666896:104667016:-	0	-
#Deleted in new
chr4	104672638	104672748	ENSG00000245384.1|CXXC4-AS1|lncRNA|chr4:104672638:104672748:+	0	+
#Deleted in new
chr4	104684500	104684599	ENSG00000245384.1|CXXC4-AS1|lncRNA|chr4:104684500:104684599:+	0	+
#Deleted in new
chr4	104927994	104928112	ENSG00000248242.1|AC004053.1|lncRNA|chr4:104927994:104928112:-	0	-
#Deleted in new
chr4	104943523	104943645	ENSG00000248373.5|AC096577.1|lncRNA|chr4:104943523:104943645:+	0	+
#Deleted in new
chr4	104966607	104966793	ENSG00000248242.1|AC004053.1|lncRNA|chr4:104966607:104966793:-	0	-
#Deleted in new
chr4	105116828	105116845	ENSG00000248373.5|AC096577.1|lncRNA|chr4:105116828:105116845:+	0	+
#Deleted in new
chr4	105116828	105116918	ENSG00000248373.5|AC096577.1|lncRNA|chr4:105116828:105116918:+	0	+
#Deleted in new
chr4	105140509	105140619	ENSG00000251259.1|AC004069.1|lncRNA|chr4:105140509:105140619:-	0	-
#Deleted in new
chr4	105171353	105171400	ENSG00000251586.1|TET2-AS1|lncRNA|chr4:105171353:105171400:-	0	-
#Deleted in new
chr4	105171586	105171731	ENSG00000251586.1|TET2-AS1|lncRNA|chr4:105171586:105171731:-	0	-
#Deleted in new
chr4	105172415	105172578	ENSG00000251586.1|TET2-AS1|lncRNA|chr4:105172415:105172578:-	0	-
#Deleted in new
chr4	105177591	105177672	ENSG00000251586.1|TET2-AS1|lncRNA|chr4:105177591:105177672:-	0	-
#Deleted in new
chr4	105177962	105178063	ENSG00000251586.1|TET2-AS1|lncRNA|chr4:105177962:105178063:-	0	-
#Deleted in new
chr4	105202339	105202546	ENSG00000168769.13|TET2|pc|chr4:105202339:105202546:+	0	+
#Deleted in new
chr4	10531412	10531758	ENSG00000109684.14|CLNK|pc|chr4:10531412:10531758:-	0	-
#Deleted in new
chr4	105405636	105405948	ENSG00000138777.19|PPA2|pc|chr4:105405636:105405948:-	0	-
#Deleted in new
chr4	105405837	105405948	ENSG00000138777.19|PPA2|pc|chr4:105405837:105405948:-	0	-
#Deleted in new
chr4	105423203	105423381	ENSG00000138777.19|PPA2|pc|chr4:105423203:105423381:-	0	-
#Deleted in new
chr4	105447994	105448093	ENSG00000138777.19|PPA2|pc|chr4:105447994:105448093:-	0	-
#Deleted in new
chr4	105540189	105540326	ENSG00000250522.1|AC004066.2|lncRNA|chr4:105540189:105540326:-	0	-
#Deleted in new
chr4	105561590	105561647	ENSG00000249885.1|ARHGEF38-IT1|lncRNA|chr4:105561590:105561647:+	0	+
#Deleted in new
chr4	105563301	105563365	ENSG00000249885.1|ARHGEF38-IT1|lncRNA|chr4:105563301:105563365:+	0	+
#Deleted in new
chr4	105569903	105570238	ENSG00000249885.1|ARHGEF38-IT1|lncRNA|chr4:105569903:105570238:+	0	+
#Duplicated in new
chr4	105677751	105680913	ENSG00000236699.8|ARHGEF38|pc|chr4:105677751:105680913:+	0	+
#Deleted in new
chr4	105702885	105703023	ENSG00000138785.14|INTS12|pc|chr4:105702885:105703023:-	0	-
#Deleted in new
chr4	105705313	105705390	ENSG00000236699.8|ARHGEF38|pc|chr4:105705313:105705390:+	0	+
#Deleted in new
chr4	105705689	105705949	ENSG00000138785.14|INTS12|pc|chr4:105705689:105705949:-	0	-
#Deleted in new
chr4	105705878	105705969	ENSG00000236699.8|ARHGEF38|pc|chr4:105705878:105705969:+	0	+
#Deleted in new
chr4	105706278	105706423	ENSG00000236699.8|ARHGEF38|pc|chr4:105706278:105706423:+	0	+
#Deleted in new
chr4	105706302	105706423	ENSG00000236699.8|ARHGEF38|pc|chr4:105706302:105706423:+	0	+
#Deleted in new
chr4	105712510	105712602	ENSG00000138780.14|GSTCD|pc|chr4:105712510:105712602:+	0	+
#Deleted in new
chr4	105746244	105746423	ENSG00000251175.5|AC008243.1|lncRNA|chr4:105746244:105746423:-	0	-
#Deleted in new
chr4	105807183	105807282	ENSG00000251175.5|AC008243.1|lncRNA|chr4:105807183:105807282:-	0	-
#Deleted in new
chr4	105815144	105815311	ENSG00000251175.5|AC008243.1|lncRNA|chr4:105815144:105815311:-	0	-
#Deleted in new
chr4	105815149	105815311	ENSG00000251175.5|AC008243.1|lncRNA|chr4:105815149:105815311:-	0	-
#Deleted in new
chr4	105821058	105821194	ENSG00000251175.5|AC008243.1|lncRNA|chr4:105821058:105821194:-	0	-
#Partially deleted in new
chr4	105826111	105826122	ENSG00000251175.5|AC008243.1|lncRNA|chr4:105826111:105826122:-	0	-
#Deleted in new
chr4	105827112	105827156	ENSG00000251175.5|AC008243.1|lncRNA|chr4:105827112:105827156:-	0	-
#Deleted in new
chr4	105827112	105827169	ENSG00000251175.5|AC008243.1|lncRNA|chr4:105827112:105827169:-	0	-
#Deleted in new
chr4	105827112	105827172	ENSG00000251175.5|AC008243.1|lncRNA|chr4:105827112:105827172:-	0	-
#Deleted in new
chr4	105929479	105929578	ENSG00000250740.1|AC109361.2|lncRNA|chr4:105929479:105929578:-	0	-
#Deleted in new
chr4	106003316	106003956	ENSG00000249635.1|AC109361.1|lncRNA|chr4:106003316:106003956:-	0	-
#Deleted in new
chr4	106003713	106004027	ENSG00000168743.12|NPNT|pc|chr4:106003713:106004027:+	0	+
#Deleted in new
chr4	106014187	106014312	ENSG00000249635.1|AC109361.1|lncRNA|chr4:106014187:106014312:-	0	-
#Deleted in new
chr4	106019808	106022478	ENSG00000249635.1|AC109361.1|lncRNA|chr4:106019808:106022478:-	0	-
#Deleted in new
chr4	106163278	106163626	ENSG00000145348.16|TBCK|pc|chr4:106163278:106163626:-	0	-
#Deleted in new
chr4	106182352	106182613	ENSG00000145348.16|TBCK|pc|chr4:106182352:106182613:-	0	-
#Deleted in new
chr4	106213353	106213598	ENSG00000145348.16|TBCK|pc|chr4:106213353:106213598:-	0	-
#Deleted in new
chr4	106213615	106213718	ENSG00000145348.16|TBCK|pc|chr4:106213615:106213718:-	0	-
#Deleted in new
chr4	106213700	106213771	ENSG00000145348.16|TBCK|pc|chr4:106213700:106213771:-	0	-
#Deleted in new
chr4	106237490	106237538	ENSG00000145348.16|TBCK|pc|chr4:106237490:106237538:-	0	-
#Deleted in new
chr4	106238596	106238740	ENSG00000145348.16|TBCK|pc|chr4:106238596:106238740:-	0	-
#Deleted in new
chr4	106254946	106255047	ENSG00000145348.16|TBCK|pc|chr4:106254946:106255047:-	0	-
#Deleted in new
chr4	106297711	106297739	ENSG00000145348.16|TBCK|pc|chr4:106297711:106297739:-	0	-
#Deleted in new
chr4	106309926	106309967	ENSG00000145348.16|TBCK|pc|chr4:106309926:106309967:-	0	-
#Deleted in new
chr4	106310332	106310588	ENSG00000145348.16|TBCK|pc|chr4:106310332:106310588:-	0	-
#Deleted in new
chr4	106315543	106315636	ENSG00000164022.16|AIMP1|pc|chr4:106315543:106315636:+	0	+
#Deleted in new
chr4	106315609	106315636	ENSG00000164022.16|AIMP1|pc|chr4:106315609:106315636:+	0	+
#Deleted in new
chr4	106321266	106321495	ENSG00000145348.16|TBCK|pc|chr4:106321266:106321495:-	0	-
#Partially deleted in new
chr4	106347525	106348491	ENSG00000164022.16|AIMP1|pc|chr4:106347525:106348491:+	0	+
#Partially deleted in new
chr4	106347525	106349220	ENSG00000164022.16|AIMP1|pc|chr4:106347525:106349220:+	0	+
#Partially deleted in new
chr4	106347525	106349226	ENSG00000164022.16|AIMP1|pc|chr4:106347525:106349226:+	0	+
#Deleted in new
chr4	10635776	10635901	ENSG00000109684.14|CLNK|pc|chr4:10635776:10635901:-	0	-
#Deleted in new
chr4	106449010	106449087	ENSG00000249613.1|LINC02173|lncRNA|chr4:106449010:106449087:+	0	+
#Deleted in new
chr4	10656508	10656561	ENSG00000109684.14|CLNK|pc|chr4:10656508:10656561:-	0	-
#Deleted in new
chr4	1071477	1073140	ENSG00000178222.12|RNF212|pc|chr4:1071477:1073140:-	0	-
#Deleted in new
chr4	107258699	107258874	ENSG00000251081.1|AC104663.1|lncRNA|chr4:107258699:107258874:+	0	+
#Deleted in new
chr4	1072755	1073193	ENSG00000178222.12|RNF212|pc|chr4:1072755:1073193:-	0	-
#Deleted in new
chr4	1072850	1073140	ENSG00000178222.12|RNF212|pc|chr4:1072850:1073140:-	0	-
#Deleted in new
chr4	1072921	1073140	ENSG00000178222.12|RNF212|pc|chr4:1072921:1073140:-	0	-
#Deleted in new
chr4	107301488	107301870	ENSG00000251081.1|AC104663.1|lncRNA|chr4:107301488:107301870:+	0	+
#Deleted in new
chr4	107590275	107590397	ENSG00000138801.8|PAPSS1|pc|chr4:107590275:107590397:-	0	-
#Deleted in new
chr4	107858471	107858553	ENSG00000164023.14|SGMS2|pc|chr4:107858471:107858553:+	0	+
#Deleted in new
chr4	107858471	107858584	ENSG00000164023.14|SGMS2|pc|chr4:107858471:107858584:+	0	+
#Deleted in new
chr4	107873329	107873444	ENSG00000245293.2|AC096564.1|lncRNA|chr4:107873329:107873444:-	0	-
#Deleted in new
chr4	107873979	107874088	ENSG00000245293.2|AC096564.1|lncRNA|chr4:107873979:107874088:-	0	-
#Deleted in new
chr4	107886666	107886826	ENSG00000245293.2|AC096564.1|lncRNA|chr4:107886666:107886826:-	0	-
#Deleted in new
chr4	107886716	107886826	ENSG00000245293.2|AC096564.1|lncRNA|chr4:107886716:107886826:-	0	-
#Deleted in new
chr4	107935594	107936607	ENSG00000155016.17|CYP2U1|pc|chr4:107935594:107936607:+	0	+
#Deleted in new
chr4	107936030	107936180	ENSG00000249604.1|AC096564.2|lncRNA|chr4:107936030:107936180:-	0	-
#Deleted in new
chr4	107936486	107936573	ENSG00000249604.1|AC096564.2|lncRNA|chr4:107936486:107936573:-	0	-
#Deleted in new
chr4	107936516	107936575	ENSG00000155016.17|CYP2U1|pc|chr4:107936516:107936575:+	0	+
#Deleted in new
chr4	107937346	107939121	ENSG00000249604.1|AC096564.2|lncRNA|chr4:107937346:107939121:-	0	-
#Deleted in new
chr4	107938037	107938176	ENSG00000155016.17|CYP2U1|pc|chr4:107938037:107938176:+	0	+
#Deleted in new
chr4	107940120	107941255	ENSG00000249604.1|AC096564.2|lncRNA|chr4:107940120:107941255:-	0	-
#Deleted in new
chr4	1079642	1079688	ENSG00000178222.12|RNF212|pc|chr4:1079642:1079688:-	0	-
#Deleted in new
chr4	108005227	108005334	ENSG00000138796.16|HADH|pc|chr4:108005227:108005334:+	0	+
#Split in new
chr4	108023473	108025941	ENSG00000138796.16|HADH|pc|chr4:108023473:108025941:+	0	+
#Split in new
chr4	108023473	108025946	ENSG00000138796.16|HADH|pc|chr4:108023473:108025946:+	0	+
#Split in new
chr4	108023473	108027760	ENSG00000138796.16|HADH|pc|chr4:108023473:108027760:+	0	+
#Deleted in new
chr4	108024434	108024568	ENSG00000138796.16|HADH|pc|chr4:108024434:108024568:+	0	+
#Partially deleted in new
chr4	108025864	108028069	ENSG00000138796.16|HADH|pc|chr4:108025864:108028069:+	0	+
#Deleted in new
chr4	108032326	108032377	ENSG00000138796.16|HADH|pc|chr4:108032326:108032377:+	0	+
#Deleted in new
chr4	108072002	108072133	ENSG00000138795.9|LEF1|pc|chr4:108072002:108072133:-	0	-
#Partially deleted in new
chr4	108072002	108072251	ENSG00000138795.9|LEF1|pc|chr4:108072002:108072251:-	0	-
#Deleted in new
chr4	108072836	108072896	ENSG00000138795.9|LEF1|pc|chr4:108072836:108072896:-	0	-
#Partially deleted in new
chr4	108540167	108540814	ENSG00000234492.4|RPL34-AS1|lncRNA|chr4:108540167:108540814:-	0	-
#Deleted in new
chr4	108541499	108541592	ENSG00000234492.4|RPL34-AS1|lncRNA|chr4:108541499:108541592:-	0	-
#Partially deleted in new
chr4	1085709	1085954	ENSG00000178222.12|RNF212|pc|chr4:1085709:1085954:-	0	-
#Deleted in new
chr4	108598537	108598695	ENSG00000234492.4|RPL34-AS1|lncRNA|chr4:108598537:108598695:-	0	-
#Deleted in new
chr4	108602712	108602845	ENSG00000234492.4|RPL34-AS1|lncRNA|chr4:108602712:108602845:-	0	-
#Partially deleted in new
chr4	108620625	108622024	ENSG00000109475.16|RPL34|pc|chr4:108620625:108622024:+	0	+
#Deleted in new
chr4	108621630	108621696	ENSG00000109475.16|RPL34|pc|chr4:108621630:108621696:+	0	+
#Deleted in new
chr4	108663232	108663306	ENSG00000198856.12|OSTC|pc|chr4:108663232:108663306:+	0	+
#Deleted in new
chr4	108854066	108854068	ENSG00000188517.14|COL25A1|pc|chr4:108854066:108854068:-	0	-
#Deleted in new
chr4	109313342	109313441	ENSG00000246774.1|ZCCHC23|lncRNA|chr4:109313342:109313441:+	0	+
#Deleted in new
chr4	109314576	109316135	ENSG00000246774.1|ZCCHC23|lncRNA|chr4:109314576:109316135:+	0	+
#Deleted in new
chr4	1093307	1094014	ENSG00000178222.12|RNF212|pc|chr4:1093307:1094014:-	0	-
#Deleted in new
chr4	109357278	109357381	ENSG00000247950.6|SEC24B-AS1|lncRNA|chr4:109357278:109357381:-	0	-
#Deleted in new
chr4	109362751	109362786	ENSG00000247950.6|SEC24B-AS1|lncRNA|chr4:109362751:109362786:-	0	-
#Deleted in new
chr4	109396193	109396279	ENSG00000247950.6|SEC24B-AS1|lncRNA|chr4:109396193:109396279:-	0	-
#Deleted in new
chr4	109406573	109406683	ENSG00000247950.6|SEC24B-AS1|lncRNA|chr4:109406573:109406683:-	0	-
#Deleted in new
chr4	109414257	109414410	ENSG00000247950.6|SEC24B-AS1|lncRNA|chr4:109414257:109414410:-	0	-
#Deleted in new
chr4	109414257	109414433	ENSG00000247950.6|SEC24B-AS1|lncRNA|chr4:109414257:109414433:-	0	-
#Deleted in new
chr4	109429962	109430780	ENSG00000247950.6|SEC24B-AS1|lncRNA|chr4:109429962:109430780:-	0	-
#Deleted in new
chr4	109430579	109430760	ENSG00000247950.6|SEC24B-AS1|lncRNA|chr4:109430579:109430760:-	0	-
#Deleted in new
chr4	109431691	109431746	ENSG00000247950.6|SEC24B-AS1|lncRNA|chr4:109431691:109431746:-	0	-
#Deleted in new
chr4	109449416	109449509	ENSG00000138802.11|SEC24B|pc|chr4:109449416:109449509:+	0	+
#Deleted in new
chr4	109648483	109648649	ENSG00000005059.15|MCUB|pc|chr4:109648483:109648649:+	0	+
#Deleted in new
chr4	109681434	109681469	ENSG00000005059.15|MCUB|pc|chr4:109681434:109681469:+	0	+
#Deleted in new
chr4	109692003	109692703	ENSG00000273447.1|AC004067.1|lncRNA|chr4:109692003:109692703:+	0	+
#Deleted in new
chr4	109703355	109703419	ENSG00000138794.9|CASP6|pc|chr4:109703355:109703419:-	0	-
#Deleted in new
chr4	109703355	109703473	ENSG00000138794.9|CASP6|pc|chr4:109703355:109703473:-	0	-
#Deleted in new
chr4	109703355	109703583	ENSG00000138794.9|CASP6|pc|chr4:109703355:109703583:-	0	-
#Partially deleted in new
chr4	109741875	109742595	ENSG00000205403.12|CFI|pc|chr4:109741875:109742595:-	0	-
#Deleted in new
chr4	110093105	110093134	ENSG00000170522.9|ELOVL6|pc|chr4:110093105:110093134:-	0	-
#Deleted in new
chr4	110559107	110559179	ENSG00000138792.9|ENPEP|pc|chr4:110559107:110559179:+	0	+
#Deleted in new
chr4	110563102	110563235	ENSG00000138792.9|ENPEP|pc|chr4:110563102:110563235:+	0	+
#Deleted in new
chr4	110564796	110565057	ENSG00000138792.9|ENPEP|pc|chr4:110564796:110565057:+	0	+
#Deleted in new
chr4	110595512	110595808	ENSG00000250103.2|PANCR|lncRNA|chr4:110595512:110595808:-	0	-
#Deleted in new
chr4	110604050	110604273	ENSG00000250103.2|PANCR|lncRNA|chr4:110604050:110604273:-	0	-
#Deleted in new
chr4	110606209	110606298	ENSG00000250103.2|PANCR|lncRNA|chr4:110606209:110606298:-	0	-
#Deleted in new
chr4	1107251	1107344	ENSG00000178222.12|RNF212|pc|chr4:1107251:1107344:-	0	-
#Deleted in new
chr4	1113638	1113752	ENSG00000251652.1|AC092535.3|lncRNA|chr4:1113638:1113752:+	0	+
#Deleted in new
chr4	111802800	111802883	ENSG00000250855.1|AC139718.2|lncRNA|chr4:111802800:111802883:+	0	+
#Deleted in new
chr4	111809570	111809694	ENSG00000248432.1|AC139718.1|lncRNA|chr4:111809570:111809694:-	0	-
#Deleted in new
chr4	111826880	111827205	ENSG00000249815.1|AC004704.1|lncRNA|chr4:111826880:111827205:-	0	-
#Deleted in new
chr4	111828926	111829050	ENSG00000249815.1|AC004704.1|lncRNA|chr4:111828926:111829050:-	0	-
#Deleted in new
chr4	111837453	111837610	ENSG00000250855.1|AC139718.2|lncRNA|chr4:111837453:111837610:+	0	+
#Deleted in new
chr4	111839645	111839886	ENSG00000250855.1|AC139718.2|lncRNA|chr4:111839645:111839886:+	0	+
#Deleted in new
chr4	112072564	112072698	ENSG00000249815.1|AC004704.1|lncRNA|chr4:112072564:112072698:-	0	-
#Partially deleted in new
chr4	112254746	112254894	ENSG00000138660.11|AP1AR|pc|chr4:112254746:112254894:+	0	+
#Deleted in new
chr4	112272967	112273316	ENSG00000272567.1|AC109347.2|lncRNA|chr4:112272967:112273316:-	0	-
#Deleted in new
chr4	112281680	112281773	ENSG00000145365.10|TIFA|pc|chr4:112281680:112281773:-	0	-
#Deleted in new
chr4	112302338	112302408	ENSG00000073331.17|ALPK1|pc|chr4:112302338:112302408:+	0	+
#Deleted in new
chr4	112302338	112302485	ENSG00000073331.17|ALPK1|pc|chr4:112302338:112302485:+	0	+
#Deleted in new
chr4	112315800	112315851	ENSG00000073331.17|ALPK1|pc|chr4:112315800:112315851:+	0	+
#Deleted in new
chr4	112315800	112315852	ENSG00000073331.17|ALPK1|pc|chr4:112315800:112315852:+	0	+
#Deleted in new
chr4	112315800	112316305	ENSG00000073331.17|ALPK1|pc|chr4:112315800:112316305:+	0	+
#Deleted in new
chr4	112352659	112353012	ENSG00000073331.17|ALPK1|pc|chr4:112352659:112353012:+	0	+
#Deleted in new
chr4	112410914	112411045	ENSG00000073331.17|ALPK1|pc|chr4:112410914:112411045:+	0	+
#Deleted in new
chr4	112546784	112546881	ENSG00000249509.1|AC023886.1|lncRNA|chr4:112546784:112546881:+	0	+
#Deleted in new
chr4	112606007	112606091	ENSG00000138658.15|ZGRF1|pc|chr4:112606007:112606091:-	0	-
#Deleted in new
chr4	112607815	112607937	ENSG00000138658.15|ZGRF1|pc|chr4:112607815:112607937:-	0	-
#Deleted in new
chr4	112609378	112609429	ENSG00000138658.15|ZGRF1|pc|chr4:112609378:112609429:-	0	-
#Deleted in new
chr4	112610706	112611019	ENSG00000138658.15|ZGRF1|pc|chr4:112610706:112611019:-	0	-
#Deleted in new
chr4	112612523	112612588	ENSG00000138658.15|ZGRF1|pc|chr4:112612523:112612588:-	0	-
#Deleted in new
chr4	112628620	112628851	ENSG00000138658.15|ZGRF1|pc|chr4:112628620:112628851:-	0	-
#Deleted in new
chr4	112629758	112630015	ENSG00000138658.15|ZGRF1|pc|chr4:112629758:112630015:-	0	-
#Deleted in new
chr4	112644424	112644488	ENSG00000174720.15|LARP7|pc|chr4:112644424:112644488:+	0	+
#Deleted in new
chr4	112645550	112645662	ENSG00000174720.15|LARP7|pc|chr4:112645550:112645662:+	0	+
#Deleted in new
chr4	112655362	112655510	ENSG00000174720.15|LARP7|pc|chr4:112655362:112655510:+	0	+
#Deleted in new
chr4	112979589	112980528	ENSG00000248152.1|AC093879.1|lncRNA|chr4:112979589:112980528:-	0	-
#Deleted in new
chr4	113071837	113071962	ENSG00000248152.1|AC093879.1|lncRNA|chr4:113071837:113071962:-	0	-
#Deleted in new
chr4	113149089	113149205	ENSG00000145362.17|ANK2|pc|chr4:113149089:113149205:+	0	+
#Deleted in new
chr4	1132308	1132440	ENSG00000251652.1|AC092535.3|lncRNA|chr4:1132308:1132440:+	0	+
#Deleted in new
chr4	1132328	1132440	ENSG00000251652.1|AC092535.3|lncRNA|chr4:1132328:1132440:+	0	+
#Deleted in new
chr4	1132708	1132950	ENSG00000251652.1|AC092535.3|lncRNA|chr4:1132708:1132950:+	0	+
#Deleted in new
chr4	1132726	1132977	ENSG00000251652.1|AC092535.3|lncRNA|chr4:1132726:1132977:+	0	+
#Deleted in new
chr4	113943255	113943503	ENSG00000249304.1|AC104779.1|lncRNA|chr4:113943255:113943503:+	0	+
#Deleted in new
chr4	113944127	113944320	ENSG00000249304.1|AC104779.1|lncRNA|chr4:113944127:113944320:+	0	+
#Partially deleted in new
chr4	113970829	113970951	ENSG00000180801.13|ARSJ|pc|chr4:113970829:113970951:-	0	-
#Deleted in new
chr4	114619422	114619525	ENSG00000174607.10|UGT8|pc|chr4:114619422:114619525:+	0	+
#Deleted in new
chr4	11469249	11469831	ENSG00000251152.1|AC025539.1|lncRNA|chr4:11469249:11469831:+	0	+
#Deleted in new
chr4	114842675	114842773	ENSG00000138653.9|NDST4|pc|chr4:114842675:114842773:-	0	-
#Partially deleted in new
chr4	1151371	1152423	ENSG00000227189.2|AC092535.1|lncRNA|chr4:1151371:1152423:+	0	+
#Deleted in new
chr4	116489363	116489473	ENSG00000250791.1|AC106892.1|lncRNA|chr4:116489363:116489473:-	0	-
#Deleted in new
chr4	116490073	116490151	ENSG00000250791.1|AC106892.1|lncRNA|chr4:116490073:116490151:-	0	-
#Deleted in new
chr4	116490075	116490151	ENSG00000250791.1|AC106892.1|lncRNA|chr4:116490075:116490151:-	0	-
#Deleted in new
chr4	116491138	116491200	ENSG00000250791.1|AC106892.1|lncRNA|chr4:116491138:116491200:-	0	-
#Deleted in new
chr4	116501667	116501762	ENSG00000250791.1|AC106892.1|lncRNA|chr4:116501667:116501762:-	0	-
#Deleted in new
chr4	116514444	116514533	ENSG00000250791.1|AC106892.1|lncRNA|chr4:116514444:116514533:-	0	-
#Deleted in new
chr4	116515112	116515146	ENSG00000250791.1|AC106892.1|lncRNA|chr4:116515112:116515146:-	0	-
#Partially deleted in new
chr4	1169762	1170576	ENSG00000159674.11|SPON2|pc|chr4:1169762:1170576:-	0	-
#Deleted in new
chr4	11722436	11722615	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11722436:11722615:+	0	+
#Deleted in new
chr4	11722450	11722615	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11722450:11722615:+	0	+
#Deleted in new
chr4	11722494	11722615	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11722494:11722615:+	0	+
#Deleted in new
chr4	117314596	117314689	ENSG00000224932.1|LINC02262|lncRNA|chr4:117314596:117314689:-	0	-
#Deleted in new
chr4	117315151	117315233	ENSG00000224932.1|LINC02262|lncRNA|chr4:117315151:117315233:-	0	-
#Deleted in new
chr4	117315844	117316148	ENSG00000224932.1|LINC02262|lncRNA|chr4:117315844:117316148:-	0	-
#Deleted in new
chr4	117321311	117321363	ENSG00000224932.1|LINC02262|lncRNA|chr4:117321311:117321363:-	0	-
#Deleted in new
chr4	117351192	117351238	ENSG00000224932.1|LINC02262|lncRNA|chr4:117351192:117351238:-	0	-
#Deleted in new
chr4	117359727	117359809	ENSG00000224932.1|LINC02262|lncRNA|chr4:117359727:117359809:-	0	-
#Deleted in new
chr4	117360563	117360639	ENSG00000224932.1|LINC02262|lncRNA|chr4:117360563:117360639:-	0	-
#Deleted in new
chr4	117360624	117360809	ENSG00000228358.5|LINC02263|lncRNA|chr4:117360624:117360809:+	0	+
#Deleted in new
chr4	117360665	117360809	ENSG00000228358.5|LINC02263|lncRNA|chr4:117360665:117360809:+	0	+
#Deleted in new
chr4	117371591	117371662	ENSG00000228358.5|LINC02263|lncRNA|chr4:117371591:117371662:+	0	+
#Deleted in new
chr4	117372363	117372471	ENSG00000228358.5|LINC02263|lncRNA|chr4:117372363:117372471:+	0	+
#Deleted in new
chr4	117372363	117372598	ENSG00000228358.5|LINC02263|lncRNA|chr4:117372363:117372598:+	0	+
#Deleted in new
chr4	117372363	117372735	ENSG00000228358.5|LINC02263|lncRNA|chr4:117372363:117372735:+	0	+
#Deleted in new
chr4	117372595	117372735	ENSG00000228358.5|LINC02263|lncRNA|chr4:117372595:117372735:+	0	+
#Deleted in new
chr4	117372757	117372852	ENSG00000228358.5|LINC02263|lncRNA|chr4:117372757:117372852:+	0	+
#Deleted in new
chr4	117406165	117406365	ENSG00000236922.9|LINC01378|lncRNA|chr4:117406165:117406365:+	0	+
#Deleted in new
chr4	11740947	11741235	ENSG00000248300.1|LINC02360|lncRNA|chr4:11740947:11741235:-	0	-
#Deleted in new
chr4	117428395	117428483	ENSG00000236922.9|LINC01378|lncRNA|chr4:117428395:117428483:+	0	+
#Deleted in new
chr4	117428402	117428483	ENSG00000236922.9|LINC01378|lncRNA|chr4:117428402:117428483:+	0	+
#Deleted in new
chr4	117428693	117428767	ENSG00000236922.9|LINC01378|lncRNA|chr4:117428693:117428767:+	0	+
#Deleted in new
chr4	117428696	117428767	ENSG00000236922.9|LINC01378|lncRNA|chr4:117428696:117428767:+	0	+
#Deleted in new
chr4	11743110	11743246	ENSG00000248300.1|LINC02360|lncRNA|chr4:11743110:11743246:-	0	-
#Deleted in new
chr4	117464471	117464538	ENSG00000236922.9|LINC01378|lncRNA|chr4:117464471:117464538:+	0	+
#Deleted in new
chr4	117468149	117468233	ENSG00000236922.9|LINC01378|lncRNA|chr4:117468149:117468233:+	0	+
#Partially deleted in new
chr4	117571832	117571892	ENSG00000236922.9|LINC01378|lncRNA|chr4:117571832:117571892:+	0	+
#Partially deleted in new
chr4	117576966	117576990	ENSG00000236922.9|LINC01378|lncRNA|chr4:117576966:117576990:+	0	+
#Deleted in new
chr4	117586980	117587050	ENSG00000236922.9|LINC01378|lncRNA|chr4:117586980:117587050:+	0	+
#Deleted in new
chr4	117603542	117603658	ENSG00000236922.9|LINC01378|lncRNA|chr4:117603542:117603658:+	0	+
#Deleted in new
chr4	11763458	11763501	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11763458:11763501:+	0	+
#Deleted in new
chr4	117654806	117654816	ENSG00000236922.9|LINC01378|lncRNA|chr4:117654806:117654816:+	0	+
#Deleted in new
chr4	117654806	117654910	ENSG00000236922.9|LINC01378|lncRNA|chr4:117654806:117654910:+	0	+
#Deleted in new
chr4	117654809	117654910	ENSG00000236922.9|LINC01378|lncRNA|chr4:117654809:117654910:+	0	+
#Deleted in new
chr4	11768727	11768810	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11768727:11768810:+	0	+
#Deleted in new
chr4	117688935	117689027	ENSG00000236922.9|LINC01378|lncRNA|chr4:117688935:117689027:+	0	+
#Deleted in new
chr4	117688935	117689123	ENSG00000236922.9|LINC01378|lncRNA|chr4:117688935:117689123:+	0	+
#Deleted in new
chr4	117688935	117689124	ENSG00000236922.9|LINC01378|lncRNA|chr4:117688935:117689124:+	0	+
#Deleted in new
chr4	117688935	117691188	ENSG00000236922.9|LINC01378|lncRNA|chr4:117688935:117691188:+	0	+
#Deleted in new
chr4	11769302	11769468	ENSG00000248300.1|LINC02360|lncRNA|chr4:11769302:11769468:-	0	-
#Deleted in new
chr4	11770305	11770475	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11770305:11770475:+	0	+
#Deleted in new
chr4	11770308	11770475	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11770308:11770475:+	0	+
#Deleted in new
chr4	11770367	11770475	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11770367:11770475:+	0	+
#Deleted in new
chr4	11770611	11770688	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11770611:11770688:+	0	+
#Partially deleted in new
chr4	11771704	11771868	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11771704:11771868:+	0	+
#Partially deleted in new
chr4	11771704	11771884	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11771704:11771884:+	0	+
#Deleted in new
chr4	11778185	11778535	ENSG00000249631.5|AC005699.1|lncRNA|chr4:11778185:11778535:+	0	+
#Deleted in new
chr4	117834400	117834486	ENSG00000229565.1|LINC02264|lncRNA|chr4:117834400:117834486:+	0	+
#Partially deleted in new
chr4	118278708	118279137	ENSG00000269893.6|SNHG8|lncRNA|chr4:118278708:118279137:+	0	+
#Deleted in new
chr4	118278754	118278792	ENSG00000269893.6|SNHG8|lncRNA|chr4:118278754:118278792:+	0	+
#Deleted in new
chr4	118278757	118278792	ENSG00000269893.6|SNHG8|lncRNA|chr4:118278757:118278792:+	0	+
#Partially deleted in new
chr4	118278943	118279137	ENSG00000269893.6|SNHG8|lncRNA|chr4:118278943:118279137:+	0	+
#Deleted in new
chr4	118279623	118279820	ENSG00000269893.6|SNHG8|lncRNA|chr4:118279623:118279820:+	0	+
#Deleted in new
chr4	118279623	118279821	ENSG00000269893.6|SNHG8|lncRNA|chr4:118279623:118279821:+	0	+
#Deleted in new
chr4	118279623	118279823	ENSG00000269893.6|SNHG8|lncRNA|chr4:118279623:118279823:+	0	+
#Partially deleted in new
chr4	118280037	118282243	ENSG00000164099.3|PRSS12|pc|chr4:118280037:118282243:-	0	-
#Deleted in new
chr4	118303277	118303879	ENSG00000164099.3|PRSS12|pc|chr4:118303277:118303879:-	0	-
#Deleted in new
chr4	118305944	118306003	ENSG00000164099.3|PRSS12|pc|chr4:118305944:118306003:-	0	-
#Deleted in new
chr4	118673108	118673369	ENSG00000281731.2|AC110079.2|lncRNA|chr4:118673108:118673369:-	0	-
#Deleted in new
chr4	118673498	118673593	ENSG00000281731.2|AC110079.2|lncRNA|chr4:118673498:118673593:-	0	-
#Deleted in new
chr4	118678043	118678138	ENSG00000281731.2|AC110079.2|lncRNA|chr4:118678043:118678138:-	0	-
#Deleted in new
chr4	118680488	118680583	ENSG00000281731.2|AC110079.2|lncRNA|chr4:118680488:118680583:-	0	-
#Deleted in new
chr4	118684407	118684466	ENSG00000281731.2|AC110079.2|lncRNA|chr4:118684407:118684466:-	0	-
#Deleted in new
chr4	118684407	118684467	ENSG00000281731.2|AC110079.2|lncRNA|chr4:118684407:118684467:-	0	-
#Deleted in new
chr4	118686549	118686699	ENSG00000145388.14|METTL14|pc|chr4:118686549:118686699:+	0	+
#Deleted in new
chr4	118735726	118736569	ENSG00000150961.14|SEC24D|pc|chr4:118735726:118736569:-	0	-
#Deleted in new
chr4	118736028	118736569	ENSG00000150961.14|SEC24D|pc|chr4:118736028:118736569:-	0	-
#Deleted in new
chr4	118736551	118736569	ENSG00000150961.14|SEC24D|pc|chr4:118736551:118736569:-	0	-
#Deleted in new
chr4	118760390	118760607	ENSG00000150961.14|SEC24D|pc|chr4:118760390:118760607:-	0	-
#Deleted in new
chr4	118766528	118766563	ENSG00000150961.14|SEC24D|pc|chr4:118766528:118766563:-	0	-
#Deleted in new
chr4	118766528	118766823	ENSG00000150961.14|SEC24D|pc|chr4:118766528:118766823:-	0	-
#Deleted in new
chr4	118769763	118769840	ENSG00000150961.14|SEC24D|pc|chr4:118769763:118769840:-	0	-
#Deleted in new
chr4	118825440	118825618	ENSG00000150961.14|SEC24D|pc|chr4:118825440:118825618:-	0	-
#Partially deleted in new
chr4	118835940	118836138	ENSG00000150961.14|SEC24D|pc|chr4:118835940:118836138:-	0	-
#Partially deleted in new
chr4	118835940	118836171	ENSG00000150961.14|SEC24D|pc|chr4:118835940:118836171:-	0	-
#Deleted in new
chr4	118838553	118838653	ENSG00000150961.14|SEC24D|pc|chr4:118838553:118838653:-	0	-
#Deleted in new
chr4	118838553	118838670	ENSG00000150961.14|SEC24D|pc|chr4:118838553:118838670:-	0	-
#Deleted in new
chr4	118838553	118838672	ENSG00000150961.14|SEC24D|pc|chr4:118838553:118838672:-	0	-
#Deleted in new
chr4	118838553	118838683	ENSG00000150961.14|SEC24D|pc|chr4:118838553:118838683:-	0	-
#Deleted in new
chr4	118850687	118850940	ENSG00000172403.10|SYNPO2|pc|chr4:118850687:118850940:+	0	+
#Partially deleted in new
chr4	119042023	119043937	ENSG00000280551.1|AC096745.2|lncRNA|chr4:119042023:119043937:+	0	+
#Deleted in new
chr4	11914666	11914754	ENSG00000248262.1|AC108037.1|lncRNA|chr4:11914666:11914754:+	0	+
#Partially deleted in new
chr4	119217549	119221495	ENSG00000145390.11|USP53|pc|chr4:119217549:119221495:+	0	+
#Deleted in new
chr4	119220115	119220211	ENSG00000145390.11|USP53|pc|chr4:119220115:119220211:+	0	+
#Deleted in new
chr4	119235289	119235411	ENSG00000145390.11|USP53|pc|chr4:119235289:119235411:+	0	+
#Partially deleted in new
chr4	119296418	119298779	ENSG00000164096.12|C4orf3|pc|chr4:119296418:119298779:-	0	-
#Deleted in new
chr4	119304244	119304445	ENSG00000164096.12|C4orf3|pc|chr4:119304244:119304445:-	0	-
#Partially deleted in new
chr4	119317249	119319091	ENSG00000145384.3|FABP2|pc|chr4:119317249:119319091:-	0	-
#Deleted in new
chr4	119409332	119410233	ENSG00000260091.1|AC093752.3|lncRNA|chr4:119409332:119410233:+	0	+
#Deleted in new
chr4	119456349	119456437	ENSG00000250950.1|AC093752.2|lncRNA|chr4:119456349:119456437:+	0	+
#Deleted in new
chr4	1196826	1197132	ENSG00000159674.11|SPON2|pc|chr4:1196826:1197132:-	0	-
#Deleted in new
chr4	119799088	119799236	ENSG00000250772.5|LINC01365|lncRNA|chr4:119799088:119799236:-	0	-
#Deleted in new
chr4	119799095	119799236	ENSG00000250772.5|LINC01365|lncRNA|chr4:119799095:119799236:-	0	-
#Deleted in new
chr4	119800128	119800280	ENSG00000250772.5|LINC01365|lncRNA|chr4:119800128:119800280:-	0	-
#Deleted in new
chr4	119800636	119800762	ENSG00000250772.5|LINC01365|lncRNA|chr4:119800636:119800762:-	0	-
#Deleted in new
chr4	119801351	119801394	ENSG00000250772.5|LINC01365|lncRNA|chr4:119801351:119801394:-	0	-
#Deleted in new
chr4	1199027	1200047	ENSG00000159674.11|SPON2|pc|chr4:1199027:1200047:-	0	-
#Deleted in new
chr4	119939539	119939675	ENSG00000250392.2|LINC02502|lncRNA|chr4:119939539:119939675:+	0	+
#Deleted in new
chr4	1199612	1200047	ENSG00000159674.11|SPON2|pc|chr4:1199612:1200047:-	0	-
#Partially deleted in new
chr4	119963787	119964293	ENSG00000250392.2|LINC02502|lncRNA|chr4:119963787:119964293:+	0	+
#Deleted in new
chr4	1199926	1200047	ENSG00000159674.11|SPON2|pc|chr4:1199926:1200047:-	0	-
#Deleted in new
chr4	120035032	120035198	ENSG00000253825.1|AC097173.2|lncRNA|chr4:120035032:120035198:-	0	-
#Deleted in new
chr4	120040307	120040615	ENSG00000253825.1|AC097173.2|lncRNA|chr4:120040307:120040615:-	0	-
#Partially deleted in new
chr4	120055607	120060290	ENSG00000164109.13|MAD2L1|pc|chr4:120055607:120060290:-	0	-
#Deleted in new
chr4	120066957	120067001	ENSG00000250938.5|AC108866.1|lncRNA|chr4:120066957:120067001:+	0	+
#Deleted in new
chr4	120066969	120067001	ENSG00000250938.5|AC108866.1|lncRNA|chr4:120066969:120067001:+	0	+
#Deleted in new
chr4	120067510	120067601	ENSG00000250938.5|AC108866.1|lncRNA|chr4:120067510:120067601:+	0	+
#Deleted in new
chr4	1201268	1201462	ENSG00000159674.11|SPON2|pc|chr4:1201268:1201462:-	0	-
#Deleted in new
chr4	1201272	1201357	ENSG00000159674.11|SPON2|pc|chr4:1201272:1201357:-	0	-
#Deleted in new
chr4	120328532	120328586	ENSG00000250938.5|AC108866.1|lncRNA|chr4:120328532:120328586:+	0	+
#Deleted in new
chr4	120335637	120335731	ENSG00000250938.5|AC108866.1|lncRNA|chr4:120335637:120335731:+	0	+
#Deleted in new
chr4	120393499	120393554	ENSG00000250938.5|AC108866.1|lncRNA|chr4:120393499:120393554:+	0	+
#Deleted in new
chr4	120393499	120393722	ENSG00000250938.5|AC108866.1|lncRNA|chr4:120393499:120393722:+	0	+
#Deleted in new
chr4	120416549	120416766	ENSG00000250938.5|AC108866.1|lncRNA|chr4:120416549:120416766:+	0	+
#Deleted in new
chr4	120639089	120639351	ENSG00000249409.1|AC025741.1|lncRNA|chr4:120639089:120639351:+	0	+
#Deleted in new
chr4	120639108	120639351	ENSG00000249409.1|AC025741.1|lncRNA|chr4:120639108:120639351:+	0	+
#Deleted in new
chr4	120650506	120650788	ENSG00000249409.1|AC025741.1|lncRNA|chr4:120650506:120650788:+	0	+
#Deleted in new
chr4	120650509	120650796	ENSG00000249409.1|AC025741.1|lncRNA|chr4:120650509:120650796:+	0	+
#Deleted in new
chr4	120684918	120685025	ENSG00000138738.10|PRDM5|pc|chr4:120684918:120685025:-	0	-
#Deleted in new
chr4	120731617	120731790	ENSG00000138738.10|PRDM5|pc|chr4:120731617:120731790:-	0	-
#Deleted in new
chr4	1208575	1208828	ENSG00000159674.11|SPON2|pc|chr4:1208575:1208828:-	0	-
#Deleted in new
chr4	1208575	1208838	ENSG00000159674.11|SPON2|pc|chr4:1208575:1208838:-	0	-
#Deleted in new
chr4	1208575	1208846	ENSG00000159674.11|SPON2|pc|chr4:1208575:1208846:-	0	-
#Deleted in new
chr4	1208575	1208962	ENSG00000159674.11|SPON2|pc|chr4:1208575:1208962:-	0	-
#Deleted in new
chr4	120885504	120885785	ENSG00000138738.10|PRDM5|pc|chr4:120885504:120885785:-	0	-
#Deleted in new
chr4	1210119	1210558	ENSG00000280927.1|CTBP1-AS|lncRNA|chr4:1210119:1210558:+	0	+
#Deleted in new
chr4	121038861	121038984	ENSG00000173376.13|NDNF|pc|chr4:121038861:121038984:-	0	-
#Partially deleted in new
chr4	121073749	121073864	ENSG00000250344.1|AC105254.1|lncRNA|chr4:121073749:121073864:+	0	+
#Deleted in new
chr4	1210889	1210956	ENSG00000280927.1|CTBP1-AS|lncRNA|chr4:1210889:1210956:+	0	+
#Deleted in new
chr4	121136584	121136685	ENSG00000050730.15|TNIP3|pc|chr4:121136584:121136685:-	0	-
#Partially deleted in new
chr4	121147048	121147174	ENSG00000050730.15|TNIP3|pc|chr4:121147048:121147174:-	0	-
#Duplicated in new
chr4	121380307	121381059	ENSG00000186867.10|QRFPR|pc|chr4:121380307:121381059:-	0	-
#Deleted in new
chr4	1215545	1215690	ENSG00000280927.1|CTBP1-AS|lncRNA|chr4:1215545:1215690:+	0	+
#Partially deleted in new
chr4	1215958	1218591	ENSG00000280927.1|CTBP1-AS|lncRNA|chr4:1215958:1218591:+	0	+
#Deleted in new
chr4	121696580	121696624	ENSG00000164111.14|ANXA5|pc|chr4:121696580:121696624:-	0	-
#Deleted in new
chr4	121696580	121696975	ENSG00000164111.14|ANXA5|pc|chr4:121696580:121696975:-	0	-
#Deleted in new
chr4	121696862	121696962	ENSG00000164111.14|ANXA5|pc|chr4:121696862:121696962:-	0	-
#Deleted in new
chr4	121696862	121696966	ENSG00000164111.14|ANXA5|pc|chr4:121696862:121696966:-	0	-
#Deleted in new
chr4	121696862	121696975	ENSG00000164111.14|ANXA5|pc|chr4:121696862:121696975:-	0	-
#Deleted in new
chr4	121696862	121696992	ENSG00000164111.14|ANXA5|pc|chr4:121696862:121696992:-	0	-
#Deleted in new
chr4	121696862	121696995	ENSG00000164111.14|ANXA5|pc|chr4:121696862:121696995:-	0	-
#Deleted in new
chr4	121696862	121697113	ENSG00000164111.14|ANXA5|pc|chr4:121696862:121697113:-	0	-
#Deleted in new
chr4	121816143	121816194	ENSG00000123737.12|EXOSC9|pc|chr4:121816143:121816194:+	0	+
#Partially deleted in new
chr4	121824439	121825993	ENSG00000138686.9|BBS7|pc|chr4:121824439:121825993:-	0	-
#Deleted in new
chr4	121824923	121825228	ENSG00000138686.9|BBS7|pc|chr4:121824923:121825228:-	0	-
#Partially deleted in new
chr4	121870277	121870487	ENSG00000138686.9|BBS7|pc|chr4:121870277:121870487:-	0	-
#Partially deleted in new
chr4	121870277	121870497	ENSG00000138686.9|BBS7|pc|chr4:121870277:121870497:-	0	-
#Deleted in new
chr4	121870582	121872848	ENSG00000261501.1|AC079341.1|lncRNA|chr4:121870582:121872848:+	0	+
#Deleted in new
chr4	1221457	1221839	ENSG00000159692.15|CTBP1|pc|chr4:1221457:1221839:-	0	-
#Deleted in new
chr4	12230859	12230984	ENSG00000251210.5|LINC02270|lncRNA|chr4:12230859:12230984:+	0	+
#Deleted in new
chr4	1223419	1223512	ENSG00000159692.15|CTBP1|pc|chr4:1223419:1223512:-	0	-
#Deleted in new
chr4	12243051	12243178	ENSG00000251210.5|LINC02270|lncRNA|chr4:12243051:12243178:+	0	+
#Deleted in new
chr4	12246934	12246970	ENSG00000251210.5|LINC02270|lncRNA|chr4:12246934:12246970:+	0	+
#Deleted in new
chr4	122624669	122624717	ENSG00000227145.1|IL21-AS1|lncRNA|chr4:122624669:122624717:+	0	+
#Deleted in new
chr4	122628884	122628996	ENSG00000227145.1|IL21-AS1|lncRNA|chr4:122628884:122628996:+	0	+
#Deleted in new
chr4	122648100	122648228	ENSG00000227145.1|IL21-AS1|lncRNA|chr4:122648100:122648228:+	0	+
#Deleted in new
chr4	122648727	122648842	ENSG00000227145.1|IL21-AS1|lncRNA|chr4:122648727:122648842:+	0	+
#Deleted in new
chr4	122649623	122649711	ENSG00000227145.1|IL21-AS1|lncRNA|chr4:122649623:122649711:+	0	+
#Deleted in new
chr4	122688536	122689156	ENSG00000227145.1|IL21-AS1|lncRNA|chr4:122688536:122689156:+	0	+
#Deleted in new
chr4	122732701	122732884	ENSG00000181004.9|BBS12|pc|chr4:122732701:122732884:+	0	+
#Deleted in new
chr4	122732796	122732884	ENSG00000181004.9|BBS12|pc|chr4:122732796:122732884:+	0	+
#Deleted in new
chr4	122888696	122888956	ENSG00000170917.13|NUDT6|pc|chr4:122888696:122888956:-	0	-
#Deleted in new
chr4	122889970	122890085	ENSG00000170917.13|NUDT6|pc|chr4:122889970:122890085:-	0	-
#Deleted in new
chr4	123102183	123102293	ENSG00000145375.7|SPATA5|pc|chr4:123102183:123102293:+	0	+
#Deleted in new
chr4	1231107	1231144	ENSG00000159692.15|CTBP1|pc|chr4:1231107:1231144:-	0	-
#Deleted in new
chr4	1232887	1233224	ENSG00000159692.15|CTBP1|pc|chr4:1232887:1233224:-	0	-
#Partially deleted in new
chr4	123313887	123319450	ENSG00000145375.7|SPATA5|pc|chr4:123313887:123319450:+	0	+
#Partially deleted in new
chr4	123397610	123398337	ENSG00000164056.10|SPRY1|pc|chr4:123397610:123398337:+	0	+
#Deleted in new
chr4	123399509	123399794	ENSG00000164056.10|SPRY1|pc|chr4:123399509:123399794:+	0	+
#Partially deleted in new
chr4	1234686	1238337	ENSG00000159692.15|CTBP1|pc|chr4:1234686:1238337:-	0	-
#Deleted in new
chr4	123490267	123490512	ENSG00000249125.1|AC093821.1|lncRNA|chr4:123490267:123490512:+	0	+
#Deleted in new
chr4	123496740	123496944	ENSG00000249125.1|AC093821.1|lncRNA|chr4:123496740:123496944:+	0	+
#Deleted in new
chr4	123505278	123505381	ENSG00000251526.1|LINC02435|lncRNA|chr4:123505278:123505381:+	0	+
#Deleted in new
chr4	123526362	123526501	ENSG00000251526.1|LINC02435|lncRNA|chr4:123526362:123526501:+	0	+
#Deleted in new
chr4	123527183	123527525	ENSG00000251526.1|LINC02435|lncRNA|chr4:123527183:123527525:+	0	+
#Deleted in new
chr4	1235752	1236316	ENSG00000159692.15|CTBP1|pc|chr4:1235752:1236316:-	0	-
#Deleted in new
chr4	123661752	123661833	ENSG00000249464.5|LINC01091|lncRNA|chr4:123661752:123661833:+	0	+
#Deleted in new
chr4	123661752	123666832	ENSG00000249464.5|LINC01091|lncRNA|chr4:123661752:123666832:+	0	+
#Deleted in new
chr4	1237102	1237264	ENSG00000159692.15|CTBP1|pc|chr4:1237102:1237264:-	0	-
#Deleted in new
chr4	123744922	123745199	ENSG00000226655.1|AC096732.1|lncRNA|chr4:123744922:123745199:-	0	-
#Deleted in new
chr4	123745318	123745389	ENSG00000226655.1|AC096732.1|lncRNA|chr4:123745318:123745389:-	0	-
#Deleted in new
chr4	123745544	123745673	ENSG00000226655.1|AC096732.1|lncRNA|chr4:123745544:123745673:-	0	-
#Deleted in new
chr4	1237474	1237522	ENSG00000159692.15|CTBP1|pc|chr4:1237474:1237522:-	0	-
#Deleted in new
chr4	123774263	123774375	ENSG00000249464.5|LINC01091|lncRNA|chr4:123774263:123774375:+	0	+
#Deleted in new
chr4	123863574	123865573	ENSG00000249464.5|LINC01091|lncRNA|chr4:123863574:123865573:+	0	+
#Deleted in new
chr4	123925183	123925337	ENSG00000249464.5|LINC01091|lncRNA|chr4:123925183:123925337:+	0	+
#Deleted in new
chr4	124149376	124149544	ENSG00000249837.1|AC121154.1|lncRNA|chr4:124149376:124149544:-	0	-
#Deleted in new
chr4	124188143	124188208	ENSG00000249837.1|AC121154.1|lncRNA|chr4:124188143:124188208:-	0	-
#Deleted in new
chr4	124208349	124208408	ENSG00000249837.1|AC121154.1|lncRNA|chr4:124208349:124208408:-	0	-
#Deleted in new
chr4	124210176	124210261	ENSG00000249837.1|AC121154.1|lncRNA|chr4:124210176:124210261:-	0	-
#Deleted in new
chr4	124499941	124500994	ENSG00000261083.1|LINC02516|lncRNA|chr4:124499941:124500994:-	0	-
#Deleted in new
chr4	124504249	124504410	ENSG00000261083.1|LINC02516|lncRNA|chr4:124504249:124504410:-	0	-
#Deleted in new
chr4	124522106	124522204	ENSG00000261083.1|LINC02516|lncRNA|chr4:124522106:124522204:-	0	-
#Partially deleted in new
chr4	124537	125296	ENSG00000250312.6|ZNF718|pc|chr4:124537:125296:+	0	+
#Deleted in new
chr4	124540325	124540385	ENSG00000261083.1|LINC02516|lncRNA|chr4:124540325:124540385:-	0	-
#Deleted in new
chr4	124543666	124543710	ENSG00000261083.1|LINC02516|lncRNA|chr4:124543666:124543710:-	0	-
#Deleted in new
chr4	124558379	124558434	ENSG00000261083.1|LINC02516|lncRNA|chr4:124558379:124558434:-	0	-
#Deleted in new
chr4	1249299	1249702	ENSG00000196810.4|CTBP1-AS2|lncRNA|chr4:1249299:1249702:+	0	+
#Partially deleted in new
chr4	1249450	1251822	ENSG00000196810.4|CTBP1-AS2|lncRNA|chr4:1249450:1251822:+	0	+
#Deleted in new
chr4	1249648	1249931	ENSG00000159692.15|CTBP1|pc|chr4:1249648:1249931:-	0	-
#Deleted in new
chr4	1249648	1249953	ENSG00000159692.15|CTBP1|pc|chr4:1249648:1249953:-	0	-
#Deleted in new
chr4	1250109	1250350	ENSG00000196810.4|CTBP1-AS2|lncRNA|chr4:1250109:1250350:+	0	+
#Partially deleted in new
chr4	1250110	1250446	ENSG00000196810.4|CTBP1-AS2|lncRNA|chr4:1250110:1250446:+	0	+
#Partially deleted in new
chr4	1250258	1255910	ENSG00000196810.4|CTBP1-AS2|lncRNA|chr4:1250258:1255910:+	0	+
#Partially deleted in new
chr4	1250895	1251187	ENSG00000196810.4|CTBP1-AS2|lncRNA|chr4:1250895:1251187:+	0	+
#Deleted in new
chr4	1252990	1254589	ENSG00000196810.4|CTBP1-AS2|lncRNA|chr4:1252990:1254589:+	0	+
#Deleted in new
chr4	125393935	125394004	ENSG00000196159.11|FAT4|pc|chr4:125393935:125394004:+	0	+
#Deleted in new
chr4	125676717	125676915	ENSG00000250149.1|AC105919.1|lncRNA|chr4:125676717:125676915:+	0	+
#Deleted in new
chr4	126070707	126070813	ENSG00000251649.1|LINC02379|lncRNA|chr4:126070707:126070813:+	0	+
#Deleted in new
chr4	1265339	1266163	ENSG00000196810.4|CTBP1-AS2|lncRNA|chr4:1265339:1266163:+	0	+
#Deleted in new
chr4	127077734	127077762	ENSG00000250945.1|AC096773.1|lncRNA|chr4:127077734:127077762:-	0	-
#Deleted in new
chr4	127106634	127106771	ENSG00000248491.5|AC093772.1|lncRNA|chr4:127106634:127106771:-	0	-
#Deleted in new
chr4	127194378	127194493	ENSG00000248491.5|AC093772.1|lncRNA|chr4:127194378:127194493:-	0	-
#Deleted in new
chr4	127411306	127411434	ENSG00000248491.5|AC093772.1|lncRNA|chr4:127411306:127411434:-	0	-
#Deleted in new
chr4	127457601	127457672	ENSG00000248491.5|AC093772.1|lncRNA|chr4:127457601:127457672:-	0	-
#Deleted in new
chr4	127675904	127676065	ENSG00000164066.12|INTU|pc|chr4:127675904:127676065:+	0	+
#Deleted in new
chr4	127683803	127683900	ENSG00000164066.12|INTU|pc|chr4:127683803:127683900:+	0	+
#Partially deleted in new
chr4	127716324	127726737	ENSG00000164066.12|INTU|pc|chr4:127716324:127726737:+	0	+
#Duplicated in new
chr4	127813017	127813475	ENSG00000164070.11|HSPA4L|pc|chr4:127813017:127813475:+	0	+
#Partially deleted in new
chr4	127840197	127844040	ENSG00000261668.1|AC093591.2|lncRNA|chr4:127840197:127844040:-	0	-
#Deleted in new
chr4	127919193	127919338	ENSG00000164073.10|MFSD8|pc|chr4:127919193:127919338:-	0	-
#Deleted in new
chr4	127919238	127919338	ENSG00000164073.10|MFSD8|pc|chr4:127919238:127919338:-	0	-
#Deleted in new
chr4	127919312	127919338	ENSG00000164073.10|MFSD8|pc|chr4:127919312:127919338:-	0	-
#Partially deleted in new
chr4	127920556	127920600	ENSG00000164073.10|MFSD8|pc|chr4:127920556:127920600:-	0	-
#Deleted in new
chr4	127921117	127921198	ENSG00000164073.10|MFSD8|pc|chr4:127921117:127921198:-	0	-
#Partially deleted in new
chr4	127932318	127933093	ENSG00000164073.10|MFSD8|pc|chr4:127932318:127933093:-	0	-
#Partially deleted in new
chr4	127932339	127933093	ENSG00000164073.10|MFSD8|pc|chr4:127932339:127933093:-	0	-
#Partially deleted in new
chr4	127932369	127933093	ENSG00000164073.10|MFSD8|pc|chr4:127932369:127933093:-	0	-
#Partially deleted in new
chr4	127932421	127933093	ENSG00000164073.10|MFSD8|pc|chr4:127932421:127933093:-	0	-
#Deleted in new
chr4	127934557	127934662	ENSG00000164073.10|MFSD8|pc|chr4:127934557:127934662:-	0	-
#Deleted in new
chr4	127945334	127945630	ENSG00000164073.10|MFSD8|pc|chr4:127945334:127945630:-	0	-
#Deleted in new
chr4	127964658	127964936	ENSG00000164073.10|MFSD8|pc|chr4:127964658:127964936:-	0	-
#Deleted in new
chr4	128001715	128001760	ENSG00000164074.14|ABHD18|pc|chr4:128001715:128001760:+	0	+
#Deleted in new
chr4	128302961	128303035	ENSG00000251432.6|AC108062.1|lncRNA|chr4:128302961:128303035:+	0	+
#Deleted in new
chr4	128428069	128428298	ENSG00000251432.6|AC108062.1|lncRNA|chr4:128428069:128428298:+	0	+
#Deleted in new
chr4	128470049	128470216	ENSG00000251432.6|AC108062.1|lncRNA|chr4:128470049:128470216:+	0	+
#Deleted in new
chr4	128470351	128470549	ENSG00000251432.6|AC108062.1|lncRNA|chr4:128470351:128470549:+	0	+
#Partially deleted in new
chr4	128470351	128470647	ENSG00000251432.6|AC108062.1|lncRNA|chr4:128470351:128470647:+	0	+
#Deleted in new
chr4	128470505	128470549	ENSG00000251432.6|AC108062.1|lncRNA|chr4:128470505:128470549:+	0	+
#Deleted in new
chr4	128474768	128474996	ENSG00000251432.6|AC108062.1|lncRNA|chr4:128474768:128474996:+	0	+
#Deleted in new
chr4	128481672	128481750	ENSG00000251432.6|AC108062.1|lncRNA|chr4:128481672:128481750:+	0	+
#Deleted in new
chr4	128511410	128511645	ENSG00000251432.6|AC108062.1|lncRNA|chr4:128511410:128511645:+	0	+
#Deleted in new
chr4	128570224	128570531	ENSG00000248187.1|AC078850.1|lncRNA|chr4:128570224:128570531:-	0	-
#Deleted in new
chr4	128582998	128583392	ENSG00000248802.1|AC078850.2|lncRNA|chr4:128582998:128583392:-	0	-
#Deleted in new
chr4	12859100	12861702	ENSG00000250371.1|AC007370.2|lncRNA|chr4:12859100:12861702:-	0	-
#Deleted in new
chr4	128599438	128599546	ENSG00000248802.1|AC078850.2|lncRNA|chr4:128599438:128599546:-	0	-
#Deleted in new
chr4	1287604	1287723	ENSG00000196810.4|CTBP1-AS2|lncRNA|chr4:1287604:1287723:+	0	+
#Deleted in new
chr4	1288025	1288291	ENSG00000196810.4|CTBP1-AS2|lncRNA|chr4:1288025:1288291:+	0	+
#Partially deleted in new
chr4	128970377	128972372	ENSG00000151466.11|SCLT1|pc|chr4:128970377:128972372:-	0	-
#Deleted in new
chr4	129100666	129100732	ENSG00000151470.12|C4orf33|pc|chr4:129100666:129100732:+	0	+
#Partially deleted in new
chr4	129102091	129102191	ENSG00000151470.12|C4orf33|pc|chr4:129102091:129102191:+	0	+
#Partially deleted in new
chr4	129111685	129116640	ENSG00000151470.12|C4orf33|pc|chr4:129111685:129116640:+	0	+
#Deleted in new
chr4	129299174	129299634	ENSG00000250193.1|AC082650.1|lncRNA|chr4:129299174:129299634:-	0	-
#Deleted in new
chr4	129304907	129305022	ENSG00000250193.1|AC082650.1|lncRNA|chr4:129304907:129305022:-	0	-
#Deleted in new
chr4	12947573	12947666	ENSG00000250098.1|AC007370.1|lncRNA|chr4:12947573:12947666:-	0	-
#Deleted in new
chr4	129726921	129727033	ENSG00000246876.6|LINC02466|lncRNA|chr4:129726921:129727033:-	0	-
#Deleted in new
chr4	129744307	129744379	ENSG00000246876.6|LINC02466|lncRNA|chr4:129744307:129744379:-	0	-
#Deleted in new
chr4	129791584	129791647	ENSG00000249618.5|LINC02465|lncRNA|chr4:129791584:129791647:+	0	+
#Deleted in new
chr4	129791584	129791660	ENSG00000249618.5|LINC02465|lncRNA|chr4:129791584:129791660:+	0	+
#Deleted in new
chr4	129798497	129798649	ENSG00000249618.5|LINC02465|lncRNA|chr4:129798497:129798649:+	0	+
#Deleted in new
chr4	129802991	129803115	ENSG00000249618.5|LINC02465|lncRNA|chr4:129802991:129803115:+	0	+
#Partially deleted in new
chr4	1298069	1298115	ENSG00000090316.15|MAEA|pc|chr4:1298069:1298115:+	0	+
#Deleted in new
chr4	129813673	129813785	ENSG00000249618.5|LINC02465|lncRNA|chr4:129813673:129813785:+	0	+
#Deleted in new
chr4	129834209	129834324	ENSG00000249618.5|LINC02465|lncRNA|chr4:129834209:129834324:+	0	+
#Partially deleted in new
chr4	129837360	129837425	ENSG00000249618.5|LINC02465|lncRNA|chr4:129837360:129837425:+	0	+
#Partially deleted in new
chr4	129837370	129837425	ENSG00000249618.5|LINC02465|lncRNA|chr4:129837370:129837425:+	0	+
#Deleted in new
chr4	129900537	129900654	ENSG00000249618.5|LINC02465|lncRNA|chr4:129900537:129900654:+	0	+
#Deleted in new
chr4	129908633	129908703	ENSG00000249618.5|LINC02465|lncRNA|chr4:129908633:129908703:+	0	+
#Deleted in new
chr4	129928567	129928716	ENSG00000249618.5|LINC02465|lncRNA|chr4:129928567:129928716:+	0	+
#Deleted in new
chr4	129949076	129949137	ENSG00000249618.5|LINC02465|lncRNA|chr4:129949076:129949137:+	0	+
#Deleted in new
chr4	1299529	1299969	ENSG00000090316.15|MAEA|pc|chr4:1299529:1299969:+	0	+
#Deleted in new
chr4	129953273	129953339	ENSG00000249618.5|LINC02465|lncRNA|chr4:129953273:129953339:+	0	+
#Deleted in new
chr4	129954377	129954576	ENSG00000249618.5|LINC02465|lncRNA|chr4:129954377:129954576:+	0	+
#Deleted in new
chr4	130376228	130376559	ENSG00000251326.1|LINC02479|lncRNA|chr4:130376228:130376559:+	0	+
#Deleted in new
chr4	130386072	130386371	ENSG00000251326.1|LINC02479|lncRNA|chr4:130386072:130386371:+	0	+
#Split in new
chr4	130808506	130811933	ENSG00000280059.1|AC093831.2|lncRNA|chr4:130808506:130811933:+	0	+
#Deleted in new
chr4	130881026	130881347	ENSG00000250503.1|AC093831.1|lncRNA|chr4:130881026:130881347:-	0	-
#Deleted in new
chr4	130885528	130885641	ENSG00000250503.1|AC093831.1|lncRNA|chr4:130885528:130885641:-	0	-
#Deleted in new
chr4	1309442	1309712	ENSG00000090316.15|MAEA|pc|chr4:1309442:1309712:+	0	+
#Deleted in new
chr4	1309466	1309595	ENSG00000090316.15|MAEA|pc|chr4:1309466:1309595:+	0	+
#Deleted in new
chr4	1309786	1309996	ENSG00000090316.15|MAEA|pc|chr4:1309786:1309996:+	0	+
#Deleted in new
chr4	131380012	131380341	ENSG00000250102.5|LINC02377|lncRNA|chr4:131380012:131380341:+	0	+
#Deleted in new
chr4	131485956	131486074	ENSG00000250102.5|LINC02377|lncRNA|chr4:131485956:131486074:+	0	+
#Deleted in new
chr4	131522919	131523008	ENSG00000250102.5|LINC02377|lncRNA|chr4:131522919:131523008:+	0	+
#Deleted in new
chr4	131527229	131527288	ENSG00000250102.5|LINC02377|lncRNA|chr4:131527229:131527288:+	0	+
#Deleted in new
chr4	131528059	131528121	ENSG00000250102.5|LINC02377|lncRNA|chr4:131528059:131528121:+	0	+
#Deleted in new
chr4	131541140	131541397	ENSG00000250102.5|LINC02377|lncRNA|chr4:131541140:131541397:+	0	+
#Deleted in new
chr4	131774592	131774692	ENSG00000251676.1|SNHG27|lncRNA|chr4:131774592:131774692:+	0	+
#Deleted in new
chr4	131774592	131775036	ENSG00000251676.1|SNHG27|lncRNA|chr4:131774592:131775036:+	0	+
#Partially deleted in new
chr4	131933505	131933648	ENSG00000251555.1|AC096711.2|lncRNA|chr4:131933505:131933648:-	0	-
#Deleted in new
chr4	131975922	131975952	ENSG00000251555.1|AC096711.2|lncRNA|chr4:131975922:131975952:-	0	-
#Deleted in new
chr4	132004809	132005074	ENSG00000251598.1|AC096711.3|lncRNA|chr4:132004809:132005074:-	0	-
#Deleted in new
chr4	132027174	132027432	ENSG00000249463.1|AC096711.1|lncRNA|chr4:132027174:132027432:-	0	-
#Deleted in new
chr4	132028345	132028434	ENSG00000249463.1|AC096711.1|lncRNA|chr4:132028345:132028434:-	0	-
#Deleted in new
chr4	132028345	132028481	ENSG00000251598.1|AC096711.3|lncRNA|chr4:132028345:132028481:-	0	-
#Deleted in new
chr4	132123850	132124031	ENSG00000251598.1|AC096711.3|lncRNA|chr4:132123850:132124031:-	0	-
#Deleted in new
chr4	132435801	132435937	ENSG00000248369.1|AC114741.1|lncRNA|chr4:132435801:132435937:-	0	-
#Deleted in new
chr4	132446371	132446495	ENSG00000248369.1|AC114741.1|lncRNA|chr4:132446371:132446495:-	0	-
#Deleted in new
chr4	132447031	132447235	ENSG00000248369.1|AC114741.1|lncRNA|chr4:132447031:132447235:-	0	-
#Deleted in new
chr4	132591088	132591276	ENSG00000251398.1|LINC01256|lncRNA|chr4:132591088:132591276:+	0	+
#Deleted in new
chr4	132644707	132644842	ENSG00000251398.1|LINC01256|lncRNA|chr4:132644707:132644842:+	0	+
#Deleted in new
chr4	132678422	132678503	ENSG00000251398.1|LINC01256|lncRNA|chr4:132678422:132678503:+	0	+
#Deleted in new
chr4	1328633	1328682	ENSG00000090316.15|MAEA|pc|chr4:1328633:1328682:+	0	+
#Deleted in new
chr4	1328633	1329276	ENSG00000090316.15|MAEA|pc|chr4:1328633:1329276:+	0	+
#Deleted in new
chr4	132870385	132870517	ENSG00000251488.1|AC115622.1|lncRNA|chr4:132870385:132870517:-	0	-
#Deleted in new
chr4	1329056	1330003	ENSG00000090316.15|MAEA|pc|chr4:1329056:1330003:+	0	+
#Partially deleted in new
chr4	1329343	1332865	ENSG00000090316.15|MAEA|pc|chr4:1329343:1332865:+	0	+
#Deleted in new
chr4	132981645	132981677	ENSG00000251488.1|AC115622.1|lncRNA|chr4:132981645:132981677:-	0	-
#Deleted in new
chr4	133075310	133075439	ENSG00000250241.5|AC105383.1|lncRNA|chr4:133075310:133075439:-	0	-
#Deleted in new
chr4	133077368	133077455	ENSG00000250241.5|AC105383.1|lncRNA|chr4:133077368:133077455:-	0	-
#Deleted in new
chr4	133093859	133095950	ENSG00000250241.5|AC105383.1|lncRNA|chr4:133093859:133095950:-	0	-
#Deleted in new
chr4	133095884	133095950	ENSG00000250241.5|AC105383.1|lncRNA|chr4:133095884:133095950:-	0	-
#Deleted in new
chr4	133096735	133096826	ENSG00000250241.5|AC105383.1|lncRNA|chr4:133096735:133096826:-	0	-
#Deleted in new
chr4	133096735	133096883	ENSG00000250241.5|AC105383.1|lncRNA|chr4:133096735:133096883:-	0	-
#Deleted in new
chr4	133139825	133139881	ENSG00000250241.5|AC105383.1|lncRNA|chr4:133139825:133139881:-	0	-
#Partially deleted in new
chr4	1332166	1332865	ENSG00000090316.15|MAEA|pc|chr4:1332166:1332865:+	0	+
#Deleted in new
chr4	13371794	13371867	ENSG00000157869.14|RAB28|pc|chr4:13371794:13371867:-	0	-
#Deleted in new
chr4	133871245	133871641	ENSG00000251388.1|AC079380.1|lncRNA|chr4:133871245:133871641:-	0	-
#Deleted in new
chr4	133977965	133978044	ENSG00000251388.1|AC079380.1|lncRNA|chr4:133977965:133978044:-	0	-
#Deleted in new
chr4	134255172	134255520	ENSG00000251199.5|AC109830.1|lncRNA|chr4:134255172:134255520:-	0	-
#Deleted in new
chr4	134326545	134326640	ENSG00000251199.5|AC109830.1|lncRNA|chr4:134326545:134326640:-	0	-
#Deleted in new
chr4	134455293	134455524	ENSG00000251291.1|LINC02462|lncRNA|chr4:134455293:134455524:+	0	+
#Deleted in new
chr4	134457743	134457852	ENSG00000251291.1|LINC02462|lncRNA|chr4:134457743:134457852:+	0	+
#Partially deleted in new
chr4	1347265	1347609	ENSG00000163945.16|UVSSA|pc|chr4:1347265:1347609:+	0	+
#Partially deleted in new
chr4	1347315	1347760	ENSG00000163945.16|UVSSA|pc|chr4:1347315:1347760:+	0	+
#Deleted in new
chr4	134780255	134780377	ENSG00000249000.1|AC093722.1|lncRNA|chr4:134780255:134780377:+	0	+
#Deleted in new
chr4	134789230	134789343	ENSG00000249000.1|AC093722.1|lncRNA|chr4:134789230:134789343:+	0	+
#Deleted in new
chr4	134815956	134816023	ENSG00000249000.1|AC093722.1|lncRNA|chr4:134815956:134816023:+	0	+
#Deleted in new
chr4	134817211	134817289	ENSG00000249000.1|AC093722.1|lncRNA|chr4:134817211:134817289:+	0	+
#Deleted in new
chr4	135070946	135071378	ENSG00000248434.1|AC107463.1|lncRNA|chr4:135070946:135071378:+	0	+
#Deleted in new
chr4	135092277	135092415	ENSG00000248434.1|AC107463.1|lncRNA|chr4:135092277:135092415:+	0	+
#Deleted in new
chr4	135092393	135092415	ENSG00000248434.1|AC107463.1|lncRNA|chr4:135092393:135092415:+	0	+
#Deleted in new
chr4	135097012	135097094	ENSG00000248434.1|AC107463.1|lncRNA|chr4:135097012:135097094:+	0	+
#Deleted in new
chr4	135097012	135097106	ENSG00000248434.1|AC107463.1|lncRNA|chr4:135097012:135097106:+	0	+
#Deleted in new
chr4	135097469	135097649	ENSG00000248434.1|AC107463.1|lncRNA|chr4:135097469:135097649:+	0	+
#Deleted in new
chr4	135097469	135097658	ENSG00000248434.1|AC107463.1|lncRNA|chr4:135097469:135097658:+	0	+
#Deleted in new
chr4	135121267	135121445	ENSG00000248456.1|LINC02485|lncRNA|chr4:135121267:135121445:-	0	-
#Deleted in new
chr4	135123481	135123559	ENSG00000248456.1|LINC02485|lncRNA|chr4:135123481:135123559:-	0	-
#Deleted in new
chr4	135123481	135123737	ENSG00000248456.1|LINC02485|lncRNA|chr4:135123481:135123737:-	0	-
#Deleted in new
chr4	135123746	135123779	ENSG00000248456.1|LINC02485|lncRNA|chr4:135123746:135123779:-	0	-
#Deleted in new
chr4	13531147	13531372	ENSG00000281202.2|LINC01097|lncRNA|chr4:13531147:13531372:-	0	-
#Deleted in new
chr4	13531147	13531417	ENSG00000281202.2|LINC01097|lncRNA|chr4:13531147:13531417:-	0	-
#Deleted in new
chr4	1356580	1356992	ENSG00000254094.1|AC078852.2|lncRNA|chr4:1356580:1356992:+	0	+
#Partially deleted in new
chr4	13577581	13578201	ENSG00000038219.12|BOD1L1|pc|chr4:13577581:13578201:-	0	-
#Deleted in new
chr4	135792383	135792795	ENSG00000250865.1|AC105362.1|lncRNA|chr4:135792383:135792795:-	0	-
#Deleted in new
chr4	135792921	135793015	ENSG00000250865.1|AC105362.1|lncRNA|chr4:135792921:135793015:-	0	-
#Deleted in new
chr4	135805846	135805904	ENSG00000250865.1|AC105362.1|lncRNA|chr4:135805846:135805904:-	0	-
#Deleted in new
chr4	135866982	135867182	ENSG00000248330.5|LINC00613|lncRNA|chr4:135866982:135867182:-	0	-
#Deleted in new
chr4	135866989	135867182	ENSG00000248330.5|LINC00613|lncRNA|chr4:135866989:135867182:-	0	-
#Deleted in new
chr4	135867002	135867182	ENSG00000248330.5|LINC00613|lncRNA|chr4:135867002:135867182:-	0	-
#Deleted in new
chr4	135867835	135867906	ENSG00000248330.5|LINC00613|lncRNA|chr4:135867835:135867906:-	0	-
#Deleted in new
chr4	135867845	135867904	ENSG00000248330.5|LINC00613|lncRNA|chr4:135867845:135867904:-	0	-
#Deleted in new
chr4	135887970	135888090	ENSG00000248330.5|LINC00613|lncRNA|chr4:135887970:135888090:-	0	-
#Deleted in new
chr4	135913621	135913680	ENSG00000248330.5|LINC00613|lncRNA|chr4:135913621:135913680:-	0	-
#Deleted in new
chr4	136118674	136118981	ENSG00000251567.5|AC018680.1|lncRNA|chr4:136118674:136118981:-	0	-
#Deleted in new
chr4	136119849	136120138	ENSG00000251567.5|AC018680.1|lncRNA|chr4:136119849:136120138:-	0	-
#Deleted in new
chr4	136125908	136126028	ENSG00000250665.1|AC073429.1|lncRNA|chr4:136125908:136126028:+	0	+
#Deleted in new
chr4	136126946	136127159	ENSG00000250665.1|AC073429.1|lncRNA|chr4:136126946:136127159:+	0	+
#Deleted in new
chr4	136138704	136138874	ENSG00000250665.1|AC073429.1|lncRNA|chr4:136138704:136138874:+	0	+
#Deleted in new
chr4	136261408	136261450	ENSG00000251567.5|AC018680.1|lncRNA|chr4:136261408:136261450:-	0	-
#Deleted in new
chr4	136281057	136281294	ENSG00000251567.5|AC018680.1|lncRNA|chr4:136281057:136281294:-	0	-
#Partially deleted in new
chr4	136395150	136395471	ENSG00000251567.5|AC018680.1|lncRNA|chr4:136395150:136395471:-	0	-
#Partially deleted in new
chr4	13655178	13655351	ENSG00000250634.5|LINC01182|lncRNA|chr4:13655178:13655351:+	0	+
#Deleted in new
chr4	136809068	136809212	ENSG00000248869.5|LINC02511|lncRNA|chr4:136809068:136809212:-	0	-
#Deleted in new
chr4	136813649	136813731	ENSG00000248869.5|LINC02511|lncRNA|chr4:136813649:136813731:-	0	-
#Deleted in new
chr4	136916174	136916226	ENSG00000248869.5|LINC02511|lncRNA|chr4:136916174:136916226:-	0	-
#Deleted in new
chr4	136921341	136921382	ENSG00000248869.5|LINC02511|lncRNA|chr4:136921341:136921382:-	0	-
#Deleted in new
chr4	137089560	137089600	ENSG00000248869.5|LINC02511|lncRNA|chr4:137089560:137089600:-	0	-
#Deleted in new
chr4	137212736	137212799	ENSG00000248869.5|LINC02511|lncRNA|chr4:137212736:137212799:-	0	-
#Partially deleted in new
chr4	1374906	1375279	ENSG00000163945.16|UVSSA|pc|chr4:1374906:1375279:+	0	+
#Deleted in new
chr4	137645264	137645493	ENSG00000250126.1|AC116563.1|lncRNA|chr4:137645264:137645493:-	0	-
#Deleted in new
chr4	137734919	137734977	ENSG00000250777.1|AC131956.2|lncRNA|chr4:137734919:137734977:-	0	-
#Partially deleted in new
chr4	13777376	13782157	ENSG00000250497.1|AC007126.1|lncRNA|chr4:13777376:13782157:-	0	-
#Deleted in new
chr4	137807705	137807770	ENSG00000250034.1|AC131956.1|lncRNA|chr4:137807705:137807770:+	0	+
#Deleted in new
chr4	137816209	137816402	ENSG00000250034.1|AC131956.1|lncRNA|chr4:137816209:137816402:+	0	+
#Partially deleted in new
chr4	138027421	138027887	ENSG00000248307.5|LINC00616|lncRNA|chr4:138027421:138027887:-	0	-
#Deleted in new
chr4	138028592	138028702	ENSG00000248307.5|LINC00616|lncRNA|chr4:138028592:138028702:-	0	-
#Deleted in new
chr4	138057463	138057508	ENSG00000250033.5|SLC7A11-AS1|lncRNA|chr4:138057463:138057508:+	0	+
#Deleted in new
chr4	138062807	138062903	ENSG00000250033.5|SLC7A11-AS1|lncRNA|chr4:138062807:138062903:+	0	+
#Deleted in new
chr4	138089013	138089306	ENSG00000250033.5|SLC7A11-AS1|lncRNA|chr4:138089013:138089306:+	0	+
#Deleted in new
chr4	138105394	138105791	ENSG00000250033.5|SLC7A11-AS1|lncRNA|chr4:138105394:138105791:+	0	+
#Deleted in new
chr4	138105718	138105791	ENSG00000250033.5|SLC7A11-AS1|lncRNA|chr4:138105718:138105791:+	0	+
#Deleted in new
chr4	138123736	138123792	ENSG00000248307.5|LINC00616|lncRNA|chr4:138123736:138123792:-	0	-
#Deleted in new
chr4	138129372	138129510	ENSG00000248307.5|LINC00616|lncRNA|chr4:138129372:138129510:-	0	-
#Deleted in new
chr4	138130418	138130685	ENSG00000248307.5|LINC00616|lncRNA|chr4:138130418:138130685:-	0	-
#Deleted in new
chr4	138130418	138130709	ENSG00000248307.5|LINC00616|lncRNA|chr4:138130418:138130709:-	0	-
#Deleted in new
chr4	138130434	138130688	ENSG00000248307.5|LINC00616|lncRNA|chr4:138130434:138130688:-	0	-
#Deleted in new
chr4	13820109	13820271	ENSG00000250634.5|LINC01182|lncRNA|chr4:13820109:13820271:+	0	+
#Deleted in new
chr4	138281738	138281784	ENSG00000249091.1|AC093903.1|lncRNA|chr4:138281738:138281784:-	0	-
#Deleted in new
chr4	13829779	13829847	ENSG00000250634.5|LINC01182|lncRNA|chr4:13829779:13829847:+	0	+
#Deleted in new
chr4	138309710	138309847	ENSG00000251372.5|LINC00499|lncRNA|chr4:138309710:138309847:+	0	+
#Deleted in new
chr4	138309711	138309847	ENSG00000251372.5|LINC00499|lncRNA|chr4:138309711:138309847:+	0	+
#Deleted in new
chr4	138309741	138309847	ENSG00000251372.5|LINC00499|lncRNA|chr4:138309741:138309847:+	0	+
#Deleted in new
chr4	138312293	138312658	ENSG00000248397.1|LINC00498|lncRNA|chr4:138312293:138312658:-	0	-
#Deleted in new
chr4	138361295	138361402	ENSG00000251372.5|LINC00499|lncRNA|chr4:138361295:138361402:+	0	+
#Partially deleted in new
chr4	1383765	1388049	ENSG00000163945.16|UVSSA|pc|chr4:1383765:1388049:+	0	+
#Partially deleted in new
chr4	138424047	138424344	ENSG00000251372.5|LINC00499|lncRNA|chr4:138424047:138424344:+	0	+
#Deleted in new
chr4	138425522	138425604	ENSG00000249381.1|LINC00500|lncRNA|chr4:138425522:138425604:+	0	+
#Partially deleted in new
chr4	138436412	138436869	ENSG00000249381.1|LINC00500|lncRNA|chr4:138436412:138436869:+	0	+
#Deleted in new
chr4	1384811	1385439	ENSG00000163945.16|UVSSA|pc|chr4:1384811:1385439:+	0	+
#Split in new
chr4	1385867	1395989	ENSG00000163945.16|UVSSA|pc|chr4:1385867:1395989:+	0	+
#Deleted in new
chr4	138664724	138665138	ENSG00000250977.1|AC098859.2|lncRNA|chr4:138664724:138665138:-	0	-
#Partially deleted in new
chr4	138665420	138665569	ENSG00000250977.1|AC098859.2|lncRNA|chr4:138665420:138665569:-	0	-
#Deleted in new
chr4	138795058	138795214	ENSG00000250501.2|AC093766.1|lncRNA|chr4:138795058:138795214:+	0	+
#Deleted in new
chr4	138937823	138937981	ENSG00000250195.1|AC109927.1|lncRNA|chr4:138937823:138937981:-	0	-
#Deleted in new
chr4	138995911	138996020	ENSG00000250195.1|AC109927.1|lncRNA|chr4:138995911:138996020:-	0	-
#Deleted in new
chr4	139012594	139012646	ENSG00000250195.1|AC109927.1|lncRNA|chr4:139012594:139012646:-	0	-
#Deleted in new
chr4	139101590	139102353	ENSG00000109381.19|ELF2|pc|chr4:139101590:139102353:-	0	-
#Deleted in new
chr4	139117828	139117950	ENSG00000109381.19|ELF2|pc|chr4:139117828:139117950:-	0	-
#Split in new
chr4	1391551	1395992	ENSG00000163945.16|UVSSA|pc|chr4:1391551:1395992:+	0	+
#Deleted in new
chr4	139404397	139404490	ENSG00000164134.12|NAA15|pc|chr4:139404397:139404490:+	0	+
#Deleted in new
chr4	139411926	139414024	ENSG00000273247.5|AC097376.2|lncRNA|chr4:139411926:139414024:-	0	-
#Deleted in new
chr4	139413801	139414024	ENSG00000273247.5|AC097376.2|lncRNA|chr4:139413801:139414024:-	0	-
#Deleted in new
chr4	139413815	139414024	ENSG00000273247.5|AC097376.2|lncRNA|chr4:139413815:139414024:-	0	-
#Deleted in new
chr4	139413823	139414024	ENSG00000273247.5|AC097376.2|lncRNA|chr4:139413823:139414024:-	0	-
#Deleted in new
chr4	139415936	139416012	ENSG00000273247.5|AC097376.2|lncRNA|chr4:139415936:139416012:-	0	-
#Deleted in new
chr4	139415936	139416146	ENSG00000273247.5|AC097376.2|lncRNA|chr4:139415936:139416146:-	0	-
#Deleted in new
chr4	139417865	139420033	ENSG00000164134.12|NAA15|pc|chr4:139417865:139420033:+	0	+
#Deleted in new
chr4	139419869	139419923	ENSG00000273247.5|AC097376.2|lncRNA|chr4:139419869:139419923:-	0	-
#Split in new
chr4	139448442	139453776	ENSG00000273247.5|AC097376.2|lncRNA|chr4:139448442:139453776:-	0	-
#Deleted in new
chr4	139452356	139452497	ENSG00000273247.5|AC097376.2|lncRNA|chr4:139452356:139452497:-	0	-
#Deleted in new
chr4	139453231	139453697	ENSG00000172007.5|RAB33B|pc|chr4:139453231:139453697:+	0	+
#Split in new
chr4	139596607	139601490	ENSG00000145391.13|SETD7|pc|chr4:139596607:139601490:-	0	-
#Deleted in new
chr4	139602682	139602757	ENSG00000145391.13|SETD7|pc|chr4:139602682:139602757:-	0	-
#Deleted in new
chr4	139604400	139604482	ENSG00000145391.13|SETD7|pc|chr4:139604400:139604482:-	0	-
#Deleted in new
chr4	139604768	139604810	ENSG00000145391.13|SETD7|pc|chr4:139604768:139604810:-	0	-
#Deleted in new
chr4	139606359	139606456	ENSG00000145391.13|SETD7|pc|chr4:139606359:139606456:-	0	-
#Deleted in new
chr4	139606597	139606699	ENSG00000145391.13|SETD7|pc|chr4:139606597:139606699:-	0	-
#Deleted in new
chr4	139687659	139687740	ENSG00000085871.8|MGST2|pc|chr4:139687659:139687740:+	0	+
#Deleted in new
chr4	13975660	13975888	ENSG00000250634.5|LINC01182|lncRNA|chr4:13975660:13975888:+	0	+
#Deleted in new
chr4	140283723	140285268	ENSG00000196951.10|SCOC-AS1|lncRNA|chr4:140283723:140285268:-	0	-
#Deleted in new
chr4	140291389	140291529	ENSG00000196951.10|SCOC-AS1|lncRNA|chr4:140291389:140291529:-	0	-
#Deleted in new
chr4	140293260	140293423	ENSG00000196951.10|SCOC-AS1|lncRNA|chr4:140293260:140293423:-	0	-
#Deleted in new
chr4	140360681	140360974	ENSG00000196951.10|SCOC-AS1|lncRNA|chr4:140360681:140360974:-	0	-
#Deleted in new
chr4	140360811	140360974	ENSG00000196951.10|SCOC-AS1|lncRNA|chr4:140360811:140360974:-	0	-
#Deleted in new
chr4	140369309	140369350	ENSG00000196951.10|SCOC-AS1|lncRNA|chr4:140369309:140369350:-	0	-
#Deleted in new
chr4	140376420	140376778	ENSG00000153130.17|SCOC|pc|chr4:140376420:140376778:+	0	+
#Deleted in new
chr4	140376674	140376778	ENSG00000153130.17|SCOC|pc|chr4:140376674:140376778:+	0	+
#Partially deleted in new
chr4	140456588	140459626	ENSG00000205301.11|MGAT4D|pc|chr4:140456588:140459626:-	0	-
#Deleted in new
chr4	140462489	140462673	ENSG00000205301.11|MGAT4D|pc|chr4:140462489:140462673:-	0	-
#Deleted in new
chr4	140712167	140712283	ENSG00000248335.1|AC096733.1|lncRNA|chr4:140712167:140712283:+	0	+
#Deleted in new
chr4	141212793	141212877	ENSG00000170153.10|RNF150|pc|chr4:141212793:141212877:-	0	-
#Deleted in new
chr4	141240738	141241329	ENSG00000248747.1|AC107220.1|lncRNA|chr4:141240738:141241329:-	0	-
#Deleted in new
chr4	141274340	141274440	ENSG00000248747.1|AC107220.1|lncRNA|chr4:141274340:141274440:-	0	-
#Partially deleted in new
chr4	141278443	141278789	ENSG00000248747.1|AC107220.1|lncRNA|chr4:141278443:141278789:-	0	-
#Deleted in new
chr4	141321128	141321381	ENSG00000248810.1|LINC02432|lncRNA|chr4:141321128:141321381:-	0	-
#Deleted in new
chr4	141332158	141332618	ENSG00000248810.1|LINC02432|lncRNA|chr4:141332158:141332618:-	0	-
#Deleted in new
chr4	14134935	14134993	ENSG00000251679.1|AC073848.1|lncRNA|chr4:14134935:14134993:+	0	+
#Deleted in new
chr4	14142398	14142496	ENSG00000251679.1|AC073848.1|lncRNA|chr4:14142398:14142496:+	0	+
#Deleted in new
chr4	141430830	141431284	ENSG00000272632.1|AC097504.2|lncRNA|chr4:141430830:141431284:+	0	+
#Deleted in new
chr4	141569930	141569982	ENSG00000250141.1|LINC02276|lncRNA|chr4:141569930:141569982:-	0	-
#Deleted in new
chr4	141575991	141576077	ENSG00000250141.1|LINC02276|lncRNA|chr4:141575991:141576077:-	0	-
#Deleted in new
chr4	14164454	14164603	ENSG00000249988.1|AC092546.1|lncRNA|chr4:14164454:14164603:+	0	+
#Deleted in new
chr4	141688821	141689035	ENSG00000164136.16|IL15|pc|chr4:141688821:141689035:+	0	+
#Partially deleted in new
chr4	141714656	141719476	ENSG00000164136.16|IL15|pc|chr4:141714656:141719476:+	0	+
#Deleted in new
chr4	141721058	141721177	ENSG00000164136.16|IL15|pc|chr4:141721058:141721177:+	0	+
#Deleted in new
chr4	141721148	141721177	ENSG00000164136.16|IL15|pc|chr4:141721148:141721177:+	0	+
#Deleted in new
chr4	14235248	14235397	ENSG00000249988.1|AC092546.1|lncRNA|chr4:14235248:14235397:+	0	+
#Deleted in new
chr4	14235514	14235697	ENSG00000249988.1|AC092546.1|lncRNA|chr4:14235514:14235697:+	0	+
#Deleted in new
chr4	142383815	142384116	ENSG00000109452.12|INPP4B|pc|chr4:142383815:142384116:-	0	-
#Deleted in new
chr4	142383961	142384116	ENSG00000109452.12|INPP4B|pc|chr4:142383961:142384116:-	0	-
#Deleted in new
chr4	14242645	14242812	ENSG00000249988.1|AC092546.1|lncRNA|chr4:14242645:14242812:+	0	+
#Deleted in new
chr4	14242645	14242813	ENSG00000249988.1|AC092546.1|lncRNA|chr4:14242645:14242813:+	0	+
#Deleted in new
chr4	142467956	142468055	ENSG00000109452.12|INPP4B|pc|chr4:142467956:142468055:-	0	-
#Deleted in new
chr4	142473252	142473415	ENSG00000109452.12|INPP4B|pc|chr4:142473252:142473415:-	0	-
#Deleted in new
chr4	142474225	142474408	ENSG00000109452.12|INPP4B|pc|chr4:142474225:142474408:-	0	-
#Deleted in new
chr4	142560456	142560669	ENSG00000109452.12|INPP4B|pc|chr4:142560456:142560669:-	0	-
#Deleted in new
chr4	142654511	142654680	ENSG00000109452.12|INPP4B|pc|chr4:142654511:142654680:-	0	-
#Deleted in new
chr4	142660776	142660896	ENSG00000109452.12|INPP4B|pc|chr4:142660776:142660896:-	0	-
#Deleted in new
chr4	142660782	142660950	ENSG00000249806.1|AC139720.1|lncRNA|chr4:142660782:142660950:+	0	+
#Deleted in new
chr4	142795151	142795613	ENSG00000109452.12|INPP4B|pc|chr4:142795151:142795613:-	0	-
#Deleted in new
chr4	143177659	143178096	ENSG00000250326.1|AC104596.1|lncRNA|chr4:143177659:143178096:-	0	-
#Deleted in new
chr4	143204416	143204532	ENSG00000170185.9|USP38|pc|chr4:143204416:143204532:+	0	+
#Deleted in new
chr4	143329278	143329858	ENSG00000250969.1|AC097658.2|lncRNA|chr4:143329278:143329858:+	0	+
#Partially deleted in new
chr4	143395816	143395989	ENSG00000109458.8|GAB1|pc|chr4:143395816:143395989:+	0	+
#Deleted in new
chr4	143417432	143417550	ENSG00000109458.8|GAB1|pc|chr4:143417432:143417550:+	0	+
#Deleted in new
chr4	143560126	143560148	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143560126:143560148:+	0	+
#Deleted in new
chr4	143568089	143568160	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143568089:143568160:+	0	+
#Deleted in new
chr4	143572412	143572581	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143572412:143572581:+	0	+
#Deleted in new
chr4	143572412	143572724	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143572412:143572724:+	0	+
#Deleted in new
chr4	143573370	143573674	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143573370:143573674:+	0	+
#Deleted in new
chr4	143601818	143601958	ENSG00000183090.5|FREM3|pc|chr4:143601818:143601958:-	0	-
#Deleted in new
chr4	143645084	143645155	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143645084:143645155:+	0	+
#Deleted in new
chr4	143649225	143649305	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143649225:143649305:+	0	+
#Deleted in new
chr4	143738974	143739117	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143738974:143739117:+	0	+
#Deleted in new
chr4	143808313	143808370	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143808313:143808370:+	0	+
#Deleted in new
chr4	14383122	14383247	ENSG00000251412.1|AC006296.2|lncRNA|chr4:14383122:14383247:-	0	-
#Deleted in new
chr4	143832559	143832615	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143832559:143832615:+	0	+
#Deleted in new
chr4	14386092	14386133	ENSG00000251412.1|AC006296.2|lncRNA|chr4:14386092:14386133:-	0	-
#Deleted in new
chr4	143861141	143861246	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143861141:143861246:+	0	+
#Deleted in new
chr4	143865002	143865072	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143865002:143865072:+	0	+
#Deleted in new
chr4	143865970	143866076	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143865970:143866076:+	0	+
#Deleted in new
chr4	143870866	143872252	ENSG00000197465.13|GYPE|pc|chr4:143870866:143872252:-	0	-
#Deleted in new
chr4	143870895	143872252	ENSG00000197465.13|GYPE|pc|chr4:143870895:143872252:-	0	-
#Deleted in new
chr4	143873356	143873475	ENSG00000197465.13|GYPE|pc|chr4:143873356:143873475:-	0	-
#Deleted in new
chr4	143875312	143875509	ENSG00000197465.13|GYPE|pc|chr4:143875312:143875509:-	0	-
#Partially deleted in new
chr4	143912330	143912449	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143912330:143912449:+	0	+
#Partially deleted in new
chr4	143912330	143912638	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143912330:143912638:+	0	+
#Deleted in new
chr4	143912539	143912638	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143912539:143912638:+	0	+
#Deleted in new
chr4	143912539	143913947	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143912539:143913947:+	0	+
#Deleted in new
chr4	143937866	143937923	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143937866:143937923:+	0	+
#Deleted in new
chr4	143953634	143953690	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143953634:143953690:+	0	+
#Deleted in new
chr4	143967087	143967179	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143967087:143967179:+	0	+
#Deleted in new
chr4	143969251	143969379	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143969251:143969379:+	0	+
#Deleted in new
chr4	143970424	143970534	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143970424:143970534:+	0	+
#Deleted in new
chr4	143970424	143970538	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143970424:143970538:+	0	+
#Deleted in new
chr4	143973109	143973251	ENSG00000251600.6|AC139713.2|lncRNA|chr4:143973109:143973251:+	0	+
#Deleted in new
chr4	143996103	143996304	ENSG00000250361.7|GYPB|pc|chr4:143996103:143996304:-	0	-
#Deleted in new
chr4	143996105	143996304	ENSG00000250361.7|GYPB|pc|chr4:143996105:143996304:-	0	-
#Deleted in new
chr4	143996141	143996304	ENSG00000250361.7|GYPB|pc|chr4:143996141:143996304:-	0	-
#Deleted in new
chr4	143996152	143996304	ENSG00000250361.7|GYPB|pc|chr4:143996152:143996304:-	0	-
#Deleted in new
chr4	143996196	143996304	ENSG00000250361.7|GYPB|pc|chr4:143996196:143996304:-	0	-
#Deleted in new
chr4	144000059	144000475	ENSG00000250361.7|GYPB|pc|chr4:144000059:144000475:-	0	-
#Deleted in new
chr4	144000382	144000475	ENSG00000250361.7|GYPB|pc|chr4:144000382:144000475:-	0	-
#Deleted in new
chr4	144002570	144002694	ENSG00000250361.7|GYPB|pc|chr4:144002570:144002694:-	0	-
#Deleted in new
chr4	144008391	144008449	ENSG00000250361.7|GYPB|pc|chr4:144008391:144008449:-	0	-
#Deleted in new
chr4	144016801	144016884	ENSG00000250361.7|GYPB|pc|chr4:144016801:144016884:-	0	-
#Deleted in new
chr4	144078934	144079038	ENSG00000251600.6|AC139713.2|lncRNA|chr4:144078934:144079038:+	0	+
#Deleted in new
chr4	14407988	14408092	ENSG00000251412.1|AC006296.2|lncRNA|chr4:14407988:14408092:-	0	-
#Deleted in new
chr4	144085201	144085306	ENSG00000251600.6|AC139713.2|lncRNA|chr4:144085201:144085306:+	0	+
#Deleted in new
chr4	14408918	14409078	ENSG00000251412.1|AC006296.2|lncRNA|chr4:14408918:14409078:-	0	-
#Deleted in new
chr4	144089900	144090131	ENSG00000251600.6|AC139713.2|lncRNA|chr4:144089900:144090131:+	0	+
#Deleted in new
chr4	144090025	144090131	ENSG00000251600.6|AC139713.2|lncRNA|chr4:144090025:144090131:+	0	+
#Deleted in new
chr4	144095296	144095374	ENSG00000251600.6|AC139713.2|lncRNA|chr4:144095296:144095374:+	0	+
#Deleted in new
chr4	144103315	144103514	ENSG00000251600.6|AC139713.2|lncRNA|chr4:144103315:144103514:+	0	+
#Deleted in new
chr4	144104015	144104040	ENSG00000251600.6|AC139713.2|lncRNA|chr4:144104015:144104040:+	0	+
#Deleted in new
chr4	144104015	144104095	ENSG00000251600.6|AC139713.2|lncRNA|chr4:144104015:144104095:+	0	+
#Deleted in new
chr4	144118239	144118362	ENSG00000251600.6|AC139713.2|lncRNA|chr4:144118239:144118362:+	0	+
#Deleted in new
chr4	144119362	144119781	ENSG00000170180.20|GYPA|pc|chr4:144119362:144119781:-	0	-
#Deleted in new
chr4	144119685	144119781	ENSG00000170180.20|GYPA|pc|chr4:144119685:144119781:-	0	-
#Deleted in new
chr4	144125922	144126359	ENSG00000251600.6|AC139713.2|lncRNA|chr4:144125922:144126359:+	0	+
#Deleted in new
chr4	144127877	144127908	ENSG00000170180.20|GYPA|pc|chr4:144127877:144127908:-	0	-
#Deleted in new
chr4	144127877	144128035	ENSG00000170180.20|GYPA|pc|chr4:144127877:144128035:-	0	-
#Deleted in new
chr4	144138160	144138243	ENSG00000170180.20|GYPA|pc|chr4:144138160:144138243:-	0	-
#Deleted in new
chr4	144144116	144144215	ENSG00000251600.6|AC139713.2|lncRNA|chr4:144144116:144144215:+	0	+
#Deleted in new
chr4	144216092	144216174	ENSG00000170180.20|GYPA|pc|chr4:144216092:144216174:-	0	-
#Deleted in new
chr4	144220702	144220772	ENSG00000170180.20|GYPA|pc|chr4:144220702:144220772:-	0	-
#Deleted in new
chr4	144283094	144283186	ENSG00000170180.20|GYPA|pc|chr4:144283094:144283186:-	0	-
#Partially deleted in new
chr4	144642921	144643734	ENSG00000248890.1|HHIP-AS1|lncRNA|chr4:144642921:144643734:-	0	-
#Partially deleted in new
chr4	144643223	144643734	ENSG00000248890.1|HHIP-AS1|lncRNA|chr4:144643223:144643734:-	0	-
#Partially deleted in new
chr4	14470464	14474563	ENSG00000248360.7|LINC00504|lncRNA|chr4:14470464:14474563:-	0	-
#Deleted in new
chr4	14474084	14474563	ENSG00000248360.7|LINC00504|lncRNA|chr4:14474084:14474563:-	0	-
#Deleted in new
chr4	14474086	14474563	ENSG00000248360.7|LINC00504|lncRNA|chr4:14474086:14474563:-	0	-
#Deleted in new
chr4	144831907	144832918	ENSG00000164162.13|ANAPC10|pc|chr4:144831907:144832918:-	0	-
#Deleted in new
chr4	144851571	144851692	ENSG00000250406.1|AC109811.1|lncRNA|chr4:144851571:144851692:+	0	+
#Deleted in new
chr4	144870860	144870953	ENSG00000164162.13|ANAPC10|pc|chr4:144870860:144870953:-	0	-
#Deleted in new
chr4	144870860	144870953	ENSG00000170180.20|GYPA|pc|chr4:144870860:144870953:-	0	-
#Deleted in new
chr4	144999256	144999294	ENSG00000164162.13|ANAPC10|pc|chr4:144999256:144999294:-	0	-
#Deleted in new
chr4	145033044	145033371	ENSG00000164162.13|ANAPC10|pc|chr4:145033044:145033371:-	0	-
#Partially deleted in new
chr4	145063985	145064361	ENSG00000164162.13|ANAPC10|pc|chr4:145063985:145064361:-	0	-
#Deleted in new
chr4	145121603	145121813	ENSG00000164163.10|ABCE1|pc|chr4:145121603:145121813:+	0	+
#Deleted in new
chr4	145170768	145171317	ENSG00000164164.15|OTUD4|pc|chr4:145170768:145171317:-	0	-
#Partially deleted in new
chr4	145179578	145179611	ENSG00000164164.15|OTUD4|pc|chr4:145179578:145179611:-	0	-
#Partially deleted in new
chr4	145179578	145179633	ENSG00000164164.15|OTUD4|pc|chr4:145179578:145179633:-	0	-
#Partially deleted in new
chr4	145179578	145179641	ENSG00000164164.15|OTUD4|pc|chr4:145179578:145179641:-	0	-
#Partially deleted in new
chr4	145179578	145179680	ENSG00000164164.15|OTUD4|pc|chr4:145179578:145179680:-	0	-
#Deleted in new
chr4	145337200	145337313	ENSG00000272727.1|LINC02266|lncRNA|chr4:145337200:145337313:-	0	-
#Deleted in new
chr4	145340360	145340421	ENSG00000272727.1|LINC02266|lncRNA|chr4:145340360:145340421:-	0	-
#Deleted in new
chr4	145503851	145503979	ENSG00000170365.9|SMAD1|pc|chr4:145503851:145503979:+	0	+
#Deleted in new
chr4	145513240	145513378	ENSG00000170365.9|SMAD1|pc|chr4:145513240:145513378:+	0	+
#Deleted in new
chr4	145525719	145525815	ENSG00000170365.9|SMAD1|pc|chr4:145525719:145525815:+	0	+
#Deleted in new
chr4	145599108	145599354	ENSG00000248686.1|LINC02491|lncRNA|chr4:145599108:145599354:+	0	+
#Partially deleted in new
chr4	145600395	145600552	ENSG00000248686.1|LINC02491|lncRNA|chr4:145600395:145600552:+	0	+
#Partially deleted in new
chr4	145650371	145650624	ENSG00000248356.1|AC093864.1|lncRNA|chr4:145650371:145650624:-	0	-
#Deleted in new
chr4	145770987	145771032	ENSG00000237136.7|C4orf51|pc|chr4:145770987:145771032:+	0	+
#Partially deleted in new
chr4	145830455	145832980	ENSG00000279481.1|AC104791.2|lncRNA|chr4:145830455:145832980:-	0	-
#Deleted in new
chr4	145833117	145833157	ENSG00000251687.1|AC104791.1|lncRNA|chr4:145833117:145833157:+	0	+
#Deleted in new
chr4	145834972	145835294	ENSG00000251687.1|AC104791.1|lncRNA|chr4:145834972:145835294:+	0	+
#Partially deleted in new
chr4	146052603	146056762	ENSG00000260303.1|AC108206.1|lncRNA|chr4:146052603:146056762:-	0	-
#Partially deleted in new
chr4	146110822	146110993	ENSG00000248809.5|LINC01095|lncRNA|chr4:146110822:146110993:-	0	-
#Deleted in new
chr4	146111158	146111473	ENSG00000248809.5|LINC01095|lncRNA|chr4:146111158:146111473:-	0	-
#Deleted in new
chr4	146111310	146111473	ENSG00000248809.5|LINC01095|lncRNA|chr4:146111310:146111473:-	0	-
#Deleted in new
chr4	146111429	146111473	ENSG00000248809.5|LINC01095|lncRNA|chr4:146111429:146111473:-	0	-
#Deleted in new
chr4	146111600	146111705	ENSG00000248809.5|LINC01095|lncRNA|chr4:146111600:146111705:-	0	-
#Deleted in new
chr4	146111600	146111717	ENSG00000248809.5|LINC01095|lncRNA|chr4:146111600:146111717:-	0	-
#Deleted in new
chr4	146111600	146111750	ENSG00000248809.5|LINC01095|lncRNA|chr4:146111600:146111750:-	0	-
#Deleted in new
chr4	146111993	146112210	ENSG00000248809.5|LINC01095|lncRNA|chr4:146111993:146112210:-	0	-
#Deleted in new
chr4	146113641	146113756	ENSG00000248809.5|LINC01095|lncRNA|chr4:146113641:146113756:-	0	-
#Deleted in new
chr4	146113641	146114465	ENSG00000248809.5|LINC01095|lncRNA|chr4:146113641:146114465:-	0	-
#Deleted in new
chr4	146114291	146114465	ENSG00000248809.5|LINC01095|lncRNA|chr4:146114291:146114465:-	0	-
#Deleted in new
chr4	146121745	146121906	ENSG00000248809.5|LINC01095|lncRNA|chr4:146121745:146121906:-	0	-
#Deleted in new
chr4	146121745	146121913	ENSG00000248809.5|LINC01095|lncRNA|chr4:146121745:146121913:-	0	-
#Deleted in new
chr4	14614279	14614416	ENSG00000248360.7|LINC00504|lncRNA|chr4:14614279:14614416:-	0	-
#Partially deleted in new
chr4	146175728	146176437	ENSG00000164167.10|LSM6|pc|chr4:146175728:146176437:+	0	+
#Deleted in new
chr4	146199942	146200000	ENSG00000164167.10|LSM6|pc|chr4:146199942:146200000:+	0	+
#Deleted in new
chr4	146215075	146215198	ENSG00000250673.2|AC097372.1|pc|chr4:146215075:146215198:+	0	+
#Deleted in new
chr4	14628755	14628980	ENSG00000248360.7|LINC00504|lncRNA|chr4:14628755:14628980:-	0	-
#Deleted in new
chr4	146957437	146957486	ENSG00000248346.1|AC092435.1|lncRNA|chr4:146957437:146957486:+	0	+
#Deleted in new
chr4	146962242	146962345	ENSG00000248346.1|AC092435.1|lncRNA|chr4:146962242:146962345:+	0	+
#Deleted in new
chr4	14716094	14716169	ENSG00000248360.7|LINC00504|lncRNA|chr4:14716094:14716169:-	0	-
#Deleted in new
chr4	147531642	147531730	ENSG00000151617.15|EDNRA|pc|chr4:147531642:147531730:+	0	+
#Deleted in new
chr4	147567605	147567708	ENSG00000251688.1|LINC02507|lncRNA|chr4:147567605:147567708:+	0	+
#Deleted in new
chr4	147573215	147573306	ENSG00000251688.1|LINC02507|lncRNA|chr4:147573215:147573306:+	0	+
#Deleted in new
chr4	147575442	147575565	ENSG00000251688.1|LINC02507|lncRNA|chr4:147575442:147575565:+	0	+
#Deleted in new
chr4	147578730	147578855	ENSG00000251688.1|LINC02507|lncRNA|chr4:147578730:147578855:+	0	+
#Deleted in new
chr4	147594264	147594587	ENSG00000251688.1|LINC02507|lncRNA|chr4:147594264:147594587:+	0	+
#Deleted in new
chr4	147609551	147609961	ENSG00000251298.1|AC093835.1|lncRNA|chr4:147609551:147609961:-	0	-
#Partially deleted in new
chr4	147634168	147636721	ENSG00000164168.7|TMEM184C|pc|chr4:147634168:147636721:+	0	+
#Deleted in new
chr4	147671866	147672044	ENSG00000164168.7|TMEM184C|pc|chr4:147671866:147672044:+	0	+
#Partially deleted in new
chr4	147860982	147866816	ENSG00000071205.11|ARHGAP10|pc|chr4:147860982:147866816:+	0	+
#Deleted in new
chr4	148201038	148201132	ENSG00000151623.14|NR3C2|pc|chr4:148201038:148201132:-	0	-
#Deleted in new
chr4	148207991	148208262	ENSG00000250354.1|AC069272.1|lncRNA|chr4:148207991:148208262:+	0	+
#Deleted in new
chr4	14859542	14859616	ENSG00000248360.7|LINC00504|lncRNA|chr4:14859542:14859616:-	0	-
#Deleted in new
chr4	148694031	148694323	ENSG00000250357.1|AC108935.1|lncRNA|chr4:148694031:148694323:+	0	+
#Deleted in new
chr4	148819350	148819956	ENSG00000279016.1|AC093648.1|lncRNA|chr4:148819350:148819956:-	0	-
#Deleted in new
chr4	14888058	14888167	ENSG00000248360.7|LINC00504|lncRNA|chr4:14888058:14888167:-	0	-
#Deleted in new
chr4	14888058	14888168	ENSG00000248360.7|LINC00504|lncRNA|chr4:14888058:14888168:-	0	-
#Deleted in new
chr4	14888058	14888169	ENSG00000248360.7|LINC00504|lncRNA|chr4:14888058:14888169:-	0	-
#Deleted in new
chr4	148940940	148941087	ENSG00000249317.1|AC002460.1|lncRNA|chr4:148940940:148941087:-	0	-
#Deleted in new
chr4	148940948	148941087	ENSG00000249317.1|AC002460.1|lncRNA|chr4:148940948:148941087:-	0	-
#Deleted in new
chr4	148941547	148941777	ENSG00000249317.1|AC002460.1|lncRNA|chr4:148941547:148941777:-	0	-
#Deleted in new
chr4	148941656	148941842	ENSG00000249317.1|AC002460.1|lncRNA|chr4:148941656:148941842:-	0	-
#Deleted in new
chr4	148942341	148942378	ENSG00000249317.1|AC002460.1|lncRNA|chr4:148942341:148942378:-	0	-
#Deleted in new
chr4	149027444	149027545	ENSG00000249752.1|AC108156.1|lncRNA|chr4:149027444:149027545:-	0	-
#Deleted in new
chr4	149031091	149031310	ENSG00000249752.1|AC108156.1|lncRNA|chr4:149031091:149031310:-	0	-
#Deleted in new
chr4	149147801	149148045	ENSG00000250252.1|LINC02430|lncRNA|chr4:149147801:149148045:-	0	-
#Deleted in new
chr4	149149548	149149780	ENSG00000250252.1|LINC02430|lncRNA|chr4:149149548:149149780:-	0	-
#Deleted in new
chr4	149214443	149214531	ENSG00000248210.1|LINC02355|lncRNA|chr4:149214443:149214531:+	0	+
#Deleted in new
chr4	149214650	149214887	ENSG00000248210.1|LINC02355|lncRNA|chr4:149214650:149214887:+	0	+
#Deleted in new
chr4	149216402	149216577	ENSG00000248210.1|LINC02355|lncRNA|chr4:149216402:149216577:+	0	+
#Deleted in new
chr4	149217964	149218020	ENSG00000248210.1|LINC02355|lncRNA|chr4:149217964:149218020:+	0	+
#Deleted in new
chr4	149277864	149278123	ENSG00000248210.1|LINC02355|lncRNA|chr4:149277864:149278123:+	0	+
#Deleted in new
chr4	149429921	149430029	ENSG00000234828.8|IQCM|pc|chr4:149429921:149430029:-	0	-
#Deleted in new
chr4	149429931	149430029	ENSG00000234828.8|IQCM|pc|chr4:149429931:149430029:-	0	-
#Deleted in new
chr4	149514524	149514742	ENSG00000234828.8|IQCM|pc|chr4:149514524:149514742:-	0	-
#Deleted in new
chr4	149587929	149587997	ENSG00000234828.8|IQCM|pc|chr4:149587929:149587997:-	0	-
#Deleted in new
chr4	149587989	149587997	ENSG00000234828.8|IQCM|pc|chr4:149587989:149587997:-	0	-
#Deleted in new
chr4	149666056	149666199	ENSG00000250905.1|AC093893.1|lncRNA|chr4:149666056:149666199:+	0	+
#Deleted in new
chr4	149690822	149690991	ENSG00000250905.1|AC093893.1|lncRNA|chr4:149690822:149690991:+	0	+
#Deleted in new
chr4	149691737	149691791	ENSG00000234828.8|IQCM|pc|chr4:149691737:149691791:-	0	-
#Deleted in new
chr4	149737	150317	ENSG00000275426.1|AC253576.2|lncRNA|chr4:149737:150317:+	0	+
#Partially deleted in new
chr4	149737613	149737711	ENSG00000234828.8|IQCM|pc|chr4:149737613:149737711:-	0	-
#Deleted in new
chr4	14976899	14977008	ENSG00000247624.6|CPEB2-AS1|lncRNA|chr4:14976899:14977008:-	0	-
#Deleted in new
chr4	14977383	14977556	ENSG00000247624.6|CPEB2-AS1|lncRNA|chr4:14977383:14977556:-	0	-
#Deleted in new
chr4	149780230	149780324	ENSG00000234828.8|IQCM|pc|chr4:149780230:149780324:-	0	-
#Deleted in new
chr4	149815310	149815348	ENSG00000234828.8|IQCM|pc|chr4:149815310:149815348:-	0	-
#Deleted in new
chr4	149815599	149815814	ENSG00000234828.8|IQCM|pc|chr4:149815599:149815814:-	0	-
#Deleted in new
chr4	149815599	149815828	ENSG00000234828.8|IQCM|pc|chr4:149815599:149815828:-	0	-
#Deleted in new
chr4	149815599	149815859	ENSG00000234828.8|IQCM|pc|chr4:149815599:149815859:-	0	-
#Deleted in new
chr4	149896133	149896233	ENSG00000234828.8|IQCM|pc|chr4:149896133:149896233:-	0	-
#Deleted in new
chr4	149956207	149956273	ENSG00000250704.1|AC105343.1|lncRNA|chr4:149956207:149956273:+	0	+
#Deleted in new
chr4	149958280	149958572	ENSG00000250704.1|AC105343.1|lncRNA|chr4:149958280:149958572:+	0	+
#Deleted in new
chr4	15063737	15063871	ENSG00000137449.15|CPEB2|pc|chr4:15063737:15063871:+	0	+
#Deleted in new
chr4	151170532	151170791	ENSG00000109686.17|SH3D19|pc|chr4:151170532:151170791:-	0	-
#Deleted in new
chr4	151277170	151277224	ENSG00000189099.11|PRSS48|pc|chr4:151277170:151277224:+	0	+
#Deleted in new
chr4	151352899	151353224	ENSG00000270265.1|AC104819.3|lncRNA|chr4:151352899:151353224:-	0	-
#Deleted in new
chr4	151533011	151533048	ENSG00000164142.15|FAM160A1|pc|chr4:151533011:151533048:+	0	+
#Deleted in new
chr4	151677299	151677431	ENSG00000251455.1|AC092611.1|lncRNA|chr4:151677299:151677431:+	0	+
#Deleted in new
chr4	151677538	151677893	ENSG00000251455.1|AC092611.1|lncRNA|chr4:151677538:151677893:+	0	+
#Deleted in new
chr4	151904931	151905313	ENSG00000249818.1|AC097375.2|lncRNA|chr4:151904931:151905313:-	0	-
#Deleted in new
chr4	151906031	151906121	ENSG00000249818.1|AC097375.2|lncRNA|chr4:151906031:151906121:-	0	-
#Deleted in new
chr4	152100753	152100817	ENSG00000245954.6|LINC02273|lncRNA|chr4:152100753:152100817:+	0	+
#Deleted in new
chr4	152100759	152100817	ENSG00000245954.6|LINC02273|lncRNA|chr4:152100759:152100817:+	0	+
#Deleted in new
chr4	152100817	152101218	ENSG00000245954.6|LINC02273|lncRNA|chr4:152100817:152101218:+	0	+
#Deleted in new
chr4	152101483	152101580	ENSG00000245954.6|LINC02273|lncRNA|chr4:152101483:152101580:+	0	+
#Deleted in new
chr4	152146384	152146516	ENSG00000250706.1|AC079340.1|lncRNA|chr4:152146384:152146516:-	0	-
#Partially deleted in new
chr4	152146987	152147082	ENSG00000250706.1|AC079340.1|lncRNA|chr4:152146987:152147082:-	0	-
#Partially deleted in new
chr4	152148022	152148126	ENSG00000250706.1|AC079340.1|lncRNA|chr4:152148022:152148126:-	0	-
#Deleted in new
chr4	152222467	152222759	ENSG00000251377.1|AC079340.2|lncRNA|chr4:152222467:152222759:-	0	-
#Deleted in new
chr4	15227847	15227960	ENSG00000249252.5|AC098829.1|lncRNA|chr4:15227847:15227960:-	0	-
#Deleted in new
chr4	15263396	15263464	ENSG00000249252.5|AC098829.1|lncRNA|chr4:15263396:15263464:-	0	-
#Deleted in new
chr4	152807203	152807248	ENSG00000164144.15|ARFIP1|pc|chr4:152807203:152807248:+	0	+
#Deleted in new
chr4	152850642	152850706	ENSG00000164144.15|ARFIP1|pc|chr4:152850642:152850706:+	0	+
#Deleted in new
chr4	152850647	152850727	ENSG00000164144.15|ARFIP1|pc|chr4:152850647:152850727:+	0	+
#Deleted in new
chr4	152917007	152917084	ENSG00000164144.15|ARFIP1|pc|chr4:152917007:152917084:+	0	+
#Deleted in new
chr4	153036811	153036980	ENSG00000249022.1|AC093599.1|lncRNA|chr4:153036811:153036980:+	0	+
#Deleted in new
chr4	153091043	153091165	ENSG00000249022.1|AC093599.1|lncRNA|chr4:153091043:153091165:+	0	+
#Deleted in new
chr4	153344648	153344740	ENSG00000121211.7|MND1|pc|chr4:153344648:153344740:+	0	+
#Deleted in new
chr4	153344661	153344740	ENSG00000121211.7|MND1|pc|chr4:153344661:153344740:+	0	+
#Deleted in new
chr4	153344680	153344740	ENSG00000121211.7|MND1|pc|chr4:153344680:153344740:+	0	+
#Deleted in new
chr4	153345352	153345506	ENSG00000121211.7|MND1|pc|chr4:153345352:153345506:+	0	+
#Deleted in new
chr4	153361502	153361624	ENSG00000121211.7|MND1|pc|chr4:153361502:153361624:+	0	+
#Deleted in new
chr4	153362986	153363025	ENSG00000121211.7|MND1|pc|chr4:153362986:153363025:+	0	+
#Deleted in new
chr4	15358140	15358682	ENSG00000251379.1|AC099550.1|lncRNA|chr4:15358140:15358682:-	0	-
#Deleted in new
chr4	15361162	15361277	ENSG00000251379.1|AC099550.1|lncRNA|chr4:15361162:15361277:-	0	-
#Deleted in new
chr4	153633235	153633359	ENSG00000121210.15|TMEM131L|pc|chr4:153633235:153633359:+	0	+
#Deleted in new
chr4	153745668	153745727	ENSG00000145428.14|RNF175|pc|chr4:153745668:153745727:-	0	-
#Deleted in new
chr4	15419928	15420032	ENSG00000251379.1|AC099550.1|lncRNA|chr4:15419928:15420032:-	0	-
#Deleted in new
chr4	154201747	154201831	ENSG00000280241.3|AC079298.3|lncRNA|chr4:154201747:154201831:+	0	+
#Deleted in new
chr4	154201819	154201831	ENSG00000280241.3|AC079298.3|lncRNA|chr4:154201819:154201831:+	0	+
#Deleted in new
chr4	154272167	154272286	ENSG00000280241.3|AC079298.3|lncRNA|chr4:154272167:154272286:+	0	+
#Deleted in new
chr4	154284455	154284579	ENSG00000197410.12|DCHS2|pc|chr4:154284455:154284579:-	0	-
#Deleted in new
chr4	154331582	154331714	ENSG00000197410.12|DCHS2|pc|chr4:154331582:154331714:-	0	-
#Deleted in new
chr4	154343467	154343646	ENSG00000197410.12|DCHS2|pc|chr4:154343467:154343646:-	0	-
#Deleted in new
chr4	154352449	154352508	ENSG00000197410.12|DCHS2|pc|chr4:154352449:154352508:-	0	-
#Deleted in new
chr4	154354724	154354817	ENSG00000197410.12|DCHS2|pc|chr4:154354724:154354817:-	0	-
#Deleted in new
chr4	154355588	154355710	ENSG00000197410.12|DCHS2|pc|chr4:154355588:154355710:-	0	-
#Deleted in new
chr4	154355588	154355730	ENSG00000197410.12|DCHS2|pc|chr4:154355588:154355730:-	0	-
#Deleted in new
chr4	154357218	154357324	ENSG00000197410.12|DCHS2|pc|chr4:154357218:154357324:-	0	-
#Deleted in new
chr4	154391163	154391296	ENSG00000197410.12|DCHS2|pc|chr4:154391163:154391296:-	0	-
#Deleted in new
chr4	154391163	154391297	ENSG00000197410.12|DCHS2|pc|chr4:154391163:154391297:-	0	-
#Deleted in new
chr4	154486442	154486520	ENSG00000197410.12|DCHS2|pc|chr4:154486442:154486520:-	0	-
#Deleted in new
chr4	154626944	154627149	ENSG00000121207.11|LRAT|pc|chr4:154626944:154627149:+	0	+
#Deleted in new
chr4	154626960	154627149	ENSG00000121207.11|LRAT|pc|chr4:154626960:154627149:+	0	+
#Deleted in new
chr4	154627071	154627149	ENSG00000121207.11|LRAT|pc|chr4:154627071:154627149:+	0	+
#Deleted in new
chr4	154636328	154636396	ENSG00000121207.11|LRAT|pc|chr4:154636328:154636396:+	0	+
#Deleted in new
chr4	154698397	154699900	ENSG00000121207.11|LRAT|pc|chr4:154698397:154699900:+	0	+
#Deleted in new
chr4	154728702	154728783	ENSG00000121207.11|LRAT|pc|chr4:154728702:154728783:+	0	+
#Deleted in new
chr4	154729438	154729578	ENSG00000121207.11|LRAT|pc|chr4:154729438:154729578:+	0	+
#Deleted in new
chr4	154740837	154740898	ENSG00000121207.11|LRAT|pc|chr4:154740837:154740898:+	0	+
#Deleted in new
chr4	154754755	154754864	ENSG00000249041.1|AC009567.1|lncRNA|chr4:154754755:154754864:-	0	-
#Deleted in new
chr4	154760924	154761041	ENSG00000249041.1|AC009567.1|lncRNA|chr4:154760924:154761041:-	0	-
#Deleted in new
chr4	154781788	154781873	ENSG00000249041.1|AC009567.1|lncRNA|chr4:154781788:154781873:-	0	-
#Deleted in new
chr4	154781816	154781932	ENSG00000151962.7|RBM46|pc|chr4:154781816:154781932:+	0	+
#Deleted in new
chr4	15481196	15481290	ENSG00000048342.15|CC2D2A|pc|chr4:15481196:15481290:+	0	+
#Deleted in new
chr4	15481196	15481351	ENSG00000048342.15|CC2D2A|pc|chr4:15481196:15481351:+	0	+
#Partially deleted in new
chr4	15481196	15482259	ENSG00000048342.15|CC2D2A|pc|chr4:15481196:15482259:+	0	+
#Partially deleted in new
chr4	15481196	15482262	ENSG00000048342.15|CC2D2A|pc|chr4:15481196:15482262:+	0	+
#Partially deleted in new
chr4	15481196	15482317	ENSG00000048342.15|CC2D2A|pc|chr4:15481196:15482317:+	0	+
#Deleted in new
chr4	155276688	155276714	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155276688:155276714:+	0	+
#Deleted in new
chr4	155286161	155286446	ENSG00000249924.2|AC097467.1|lncRNA|chr4:155286161:155286446:-	0	-
#Partially deleted in new
chr4	155305027	155305151	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155305027:155305151:+	0	+
#Deleted in new
chr4	155305064	155305091	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155305064:155305091:+	0	+
#Deleted in new
chr4	155309003	155309076	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155309003:155309076:+	0	+
#Deleted in new
chr4	155316735	155316828	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155316735:155316828:+	0	+
#Deleted in new
chr4	155321454	155321710	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155321454:155321710:+	0	+
#Deleted in new
chr4	155321642	155321710	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155321642:155321710:+	0	+
#Deleted in new
chr4	155329708	155329950	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155329708:155329950:+	0	+
#Deleted in new
chr4	155329708	155329953	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155329708:155329953:+	0	+
#Deleted in new
chr4	155329708	155330310	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155329708:155330310:+	0	+
#Deleted in new
chr4	155329733	155329953	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155329733:155329953:+	0	+
#Deleted in new
chr4	155337836	155338017	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155337836:155338017:+	0	+
#Deleted in new
chr4	155338978	155339050	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155338978:155339050:+	0	+
#Deleted in new
chr4	155339780	155339873	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155339780:155339873:+	0	+
#Deleted in new
chr4	155339968	155340034	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155339968:155340034:+	0	+
#Deleted in new
chr4	155341421	155341540	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155341421:155341540:+	0	+
#Deleted in new
chr4	155342259	155342424	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155342259:155342424:+	0	+
#Deleted in new
chr4	155342315	155342424	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155342315:155342424:+	0	+
#Deleted in new
chr4	155342320	155342424	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155342320:155342424:+	0	+
#Deleted in new
chr4	155342361	155342424	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155342361:155342424:+	0	+
#Deleted in new
chr4	155349380	155349457	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155349380:155349457:+	0	+
#Partially deleted in new
chr4	155349670	155350239	ENSG00000164114.18|MAP9|pc|chr4:155349670:155350239:-	0	-
#Deleted in new
chr4	155354208	155354218	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155354208:155354218:+	0	+
#Deleted in new
chr4	155354208	155354373	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155354208:155354373:+	0	+
#Deleted in new
chr4	155354208	155354374	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155354208:155354374:+	0	+
#Deleted in new
chr4	155354215	155354373	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155354215:155354373:+	0	+
#Deleted in new
chr4	155362263	155362304	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155362263:155362304:+	0	+
#Deleted in new
chr4	155362464	155362529	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155362464:155362529:+	0	+
#Deleted in new
chr4	155362816	155362985	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155362816:155362985:+	0	+
#Deleted in new
chr4	155362816	155363070	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155362816:155363070:+	0	+
#Deleted in new
chr4	155362816	155363147	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155362816:155363147:+	0	+
#Deleted in new
chr4	155362816	155363196	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155362816:155363196:+	0	+
#Deleted in new
chr4	155362816	155363278	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155362816:155363278:+	0	+
#Deleted in new
chr4	155362816	155363308	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155362816:155363308:+	0	+
#Deleted in new
chr4	155379052	155379184	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155379052:155379184:+	0	+
#Partially deleted in new
chr4	155381171	155381694	ENSG00000250910.7|AC097467.3|lncRNA|chr4:155381171:155381694:+	0	+
#Deleted in new
chr4	15543578	15543961	ENSG00000048342.15|CC2D2A|pc|chr4:15543578:15543961:+	0	+
#Deleted in new
chr4	155517173	155517459	ENSG00000251244.1|AC107208.1|lncRNA|chr4:155517173:155517459:+	0	+
#Partially deleted in new
chr4	155772601	155772753	ENSG00000061918.12|GUCY1B3|pc|chr4:155772601:155772753:+	0	+
#Deleted in new
chr4	155854737	155854864	ENSG00000151790.8|TDO2|pc|chr4:155854737:155854864:+	0	+
#Deleted in new
chr4	155854756	155854864	ENSG00000151790.8|TDO2|pc|chr4:155854756:155854864:+	0	+
#Deleted in new
chr4	155854761	155854864	ENSG00000151790.8|TDO2|pc|chr4:155854761:155854864:+	0	+
#Deleted in new
chr4	155854770	155854864	ENSG00000151790.8|TDO2|pc|chr4:155854770:155854864:+	0	+
#Deleted in new
chr4	155855301	155855330	ENSG00000151790.8|TDO2|pc|chr4:155855301:155855330:+	0	+
#Deleted in new
chr4	155858847	155858898	ENSG00000151790.8|TDO2|pc|chr4:155858847:155858898:+	0	+
#Deleted in new
chr4	155883931	155884099	ENSG00000151790.8|TDO2|pc|chr4:155883931:155884099:+	0	+
#Deleted in new
chr4	15641523	15641627	ENSG00000118564.14|FBXL5|pc|chr4:15641523:15641627:-	0	-
#Deleted in new
chr4	156585978	156586163	ENSG00000251511.1|AC096736.3|lncRNA|chr4:156585978:156586163:+	0	+
#Deleted in new
chr4	156643453	156643569	ENSG00000249479.1|AC096736.2|lncRNA|chr4:156643453:156643569:+	0	+
#Deleted in new
chr4	156774371	156774478	ENSG00000145431.10|PDGFC|pc|chr4:156774371:156774478:-	0	-
#Partially deleted in new
chr4	156778200	156778309	ENSG00000145431.10|PDGFC|pc|chr4:156778200:156778309:-	0	-
#Deleted in new
chr4	156841358	156841419	ENSG00000248629.1|AC092608.1|lncRNA|chr4:156841358:156841419:+	0	+
#Deleted in new
chr4	156842030	156842236	ENSG00000248629.1|AC092608.1|lncRNA|chr4:156842030:156842236:+	0	+
#Deleted in new
chr4	15684681	15684765	ENSG00000237765.6|FAM200B|pc|chr4:15684681:15684765:+	0	+
#Deleted in new
chr4	15684849	15684959	ENSG00000237765.6|FAM200B|pc|chr4:15684849:15684959:+	0	+
#Deleted in new
chr4	15684885	15684959	ENSG00000237765.6|FAM200B|pc|chr4:15684885:15684959:+	0	+
#Partially deleted in new
chr4	15686235	15689101	ENSG00000237765.6|FAM200B|pc|chr4:15686235:15689101:+	0	+
#Partially deleted in new
chr4	15686235	15690439	ENSG00000237765.6|FAM200B|pc|chr4:15686235:15690439:+	0	+
#Deleted in new
chr4	15686931	15687145	ENSG00000237765.6|FAM200B|pc|chr4:15686931:15687145:+	0	+
#Deleted in new
chr4	15686931	15687148	ENSG00000237765.6|FAM200B|pc|chr4:15686931:15687148:+	0	+
#Deleted in new
chr4	15686931	15687460	ENSG00000237765.6|FAM200B|pc|chr4:15686931:15687460:+	0	+
#Deleted in new
chr4	15687000	15687141	ENSG00000237765.6|FAM200B|pc|chr4:15687000:15687141:+	0	+
#Deleted in new
chr4	15687000	15687145	ENSG00000237765.6|FAM200B|pc|chr4:15687000:15687145:+	0	+
#Deleted in new
chr4	15687000	15687148	ENSG00000237765.6|FAM200B|pc|chr4:15687000:15687148:+	0	+
#Deleted in new
chr4	15687000	15687305	ENSG00000237765.6|FAM200B|pc|chr4:15687000:15687305:+	0	+
#Deleted in new
chr4	15687000	15687312	ENSG00000237765.6|FAM200B|pc|chr4:15687000:15687312:+	0	+
#Deleted in new
chr4	15687000	15687462	ENSG00000237765.6|FAM200B|pc|chr4:15687000:15687462:+	0	+
#Deleted in new
chr4	156876434	156876820	ENSG00000280284.1|AC092608.3|lncRNA|chr4:156876434:156876820:+	0	+
#Deleted in new
chr4	15688550	15688613	ENSG00000237765.6|FAM200B|pc|chr4:15688550:15688613:+	0	+
#Deleted in new
chr4	15688550	15688619	ENSG00000237765.6|FAM200B|pc|chr4:15688550:15688619:+	0	+
#Deleted in new
chr4	15688550	15688694	ENSG00000237765.6|FAM200B|pc|chr4:15688550:15688694:+	0	+
#Deleted in new
chr4	15688550	15688972	ENSG00000237765.6|FAM200B|pc|chr4:15688550:15688972:+	0	+
#Deleted in new
chr4	15688550	15689096	ENSG00000237765.6|FAM200B|pc|chr4:15688550:15689096:+	0	+
#Deleted in new
chr4	15688550	15690447	ENSG00000237765.6|FAM200B|pc|chr4:15688550:15690447:+	0	+
#Deleted in new
chr4	15704919	15704964	ENSG00000109743.10|BST1|pc|chr4:15704919:15704964:+	0	+
#Deleted in new
chr4	15723434	15723666	ENSG00000109743.10|BST1|pc|chr4:15723434:15723666:+	0	+
#Partially deleted in new
chr4	15737786	15738308	ENSG00000109743.10|BST1|pc|chr4:15737786:15738308:+	0	+
#Partially deleted in new
chr4	15737786	15738313	ENSG00000109743.10|BST1|pc|chr4:15737786:15738313:+	0	+
#Deleted in new
chr4	157572489	157572575	ENSG00000234111.6|LINC02433|lncRNA|chr4:157572489:157572575:+	0	+
#Deleted in new
chr4	157572535	157572575	ENSG00000234111.6|LINC02433|lncRNA|chr4:157572535:157572575:+	0	+
#Deleted in new
chr4	157572535	157572725	ENSG00000234111.6|LINC02433|lncRNA|chr4:157572535:157572725:+	0	+
#Deleted in new
chr4	157572673	157572725	ENSG00000234111.6|LINC02433|lncRNA|chr4:157572673:157572725:+	0	+
#Deleted in new
chr4	157574897	157575824	ENSG00000234111.6|LINC02433|lncRNA|chr4:157574897:157575824:+	0	+
#Deleted in new
chr4	157574897	157576154	ENSG00000234111.6|LINC02433|lncRNA|chr4:157574897:157576154:+	0	+
#Deleted in new
chr4	157637686	157638124	ENSG00000249275.1|AC093817.1|lncRNA|chr4:157637686:157638124:+	0	+
#Partially deleted in new
chr4	157945816	157946642	ENSG00000279994.1|AC017037.4|lncRNA|chr4:157945816:157946642:-	0	-
#Deleted in new
chr4	158109499	158110153	ENSG00000279139.1|AC098679.4|lncRNA|chr4:158109499:158110153:-	0	-
#Deleted in new
chr4	158198787	158198870	ENSG00000248429.5|AC098679.1|lncRNA|chr4:158198787:158198870:+	0	+
#Partially deleted in new
chr4	158199087	158200913	ENSG00000248429.5|AC098679.1|lncRNA|chr4:158199087:158200913:+	0	+
#Deleted in new
chr4	158200323	158200442	ENSG00000250604.1|AC098679.2|lncRNA|chr4:158200323:158200442:-	0	-
#Deleted in new
chr4	158203619	158203708	ENSG00000164124.10|TMEM144|pc|chr4:158203619:158203708:+	0	+
#Deleted in new
chr4	158203642	158203708	ENSG00000164124.10|TMEM144|pc|chr4:158203642:158203708:+	0	+
#Partially deleted in new
chr4	158210248	158210586	ENSG00000164124.10|TMEM144|pc|chr4:158210248:158210586:+	0	+
#Partially deleted in new
chr4	158210458	158210586	ENSG00000164124.10|TMEM144|pc|chr4:158210458:158210586:+	0	+
#Deleted in new
chr4	158210483	158210586	ENSG00000164124.10|TMEM144|pc|chr4:158210483:158210586:+	0	+
#Deleted in new
chr4	158210484	158210586	ENSG00000164124.10|TMEM144|pc|chr4:158210484:158210586:+	0	+
#Deleted in new
chr4	158210485	158210586	ENSG00000164124.10|TMEM144|pc|chr4:158210485:158210586:+	0	+
#Deleted in new
chr4	158210554	158210586	ENSG00000164124.10|TMEM144|pc|chr4:158210554:158210586:+	0	+
#Partially deleted in new
chr4	158211452	158211574	ENSG00000164124.10|TMEM144|pc|chr4:158211452:158211574:+	0	+
#Partially deleted in new
chr4	158211452	158211906	ENSG00000164124.10|TMEM144|pc|chr4:158211452:158211906:+	0	+
#Partially deleted in new
chr4	158211458	158211574	ENSG00000164124.10|TMEM144|pc|chr4:158211458:158211574:+	0	+
#Deleted in new
chr4	158211532	158211574	ENSG00000164124.10|TMEM144|pc|chr4:158211532:158211574:+	0	+
#Deleted in new
chr4	158212060	158212220	ENSG00000164124.10|TMEM144|pc|chr4:158212060:158212220:+	0	+
#Partially deleted in new
chr4	158232900	158234390	ENSG00000164124.10|TMEM144|pc|chr4:158232900:158234390:+	0	+
#Partially deleted in new
chr4	15824880	15826086	ENSG00000004468.12|CD38|pc|chr4:15824880:15826086:+	0	+
#Deleted in new
chr4	158315310	158315470	ENSG00000171509.15|RXFP1|pc|chr4:158315310:158315470:+	0	+
#Deleted in new
chr4	158422269	158422368	ENSG00000171509.15|RXFP1|pc|chr4:158422269:158422368:+	0	+
#Deleted in new
chr4	158490765	158490895	ENSG00000249901.1|AC121161.2|lncRNA|chr4:158490765:158490895:-	0	-
#Deleted in new
chr4	158494925	158495056	ENSG00000249901.1|AC121161.2|lncRNA|chr4:158494925:158495056:-	0	-
#Deleted in new
chr4	158509510	158509908	ENSG00000249901.1|AC121161.2|lncRNA|chr4:158509510:158509908:-	0	-
#Deleted in new
chr4	158514844	158514938	ENSG00000171509.15|RXFP1|pc|chr4:158514844:158514938:+	0	+
#Deleted in new
chr4	158543717	158544168	ENSG00000171509.15|RXFP1|pc|chr4:158543717:158544168:+	0	+
#Deleted in new
chr4	158544231	158544406	ENSG00000171509.15|RXFP1|pc|chr4:158544231:158544406:+	0	+
#Deleted in new
chr4	158610632	158610685	ENSG00000171509.15|RXFP1|pc|chr4:158610632:158610685:+	0	+
#Partially deleted in new
chr4	158646302	158646679	ENSG00000171509.15|RXFP1|pc|chr4:158646302:158646679:+	0	+
#Deleted in new
chr4	158679289	158680101	ENSG00000171503.11|ETFDH|pc|chr4:158679289:158680101:+	0	+
#Deleted in new
chr4	158681570	158681614	ENSG00000171503.11|ETFDH|pc|chr4:158681570:158681614:+	0	+
#Partially deleted in new
chr4	158795853	158796024	ENSG00000052795.12|FNIP2|pc|chr4:158795853:158796024:+	0	+
#Deleted in new
chr4	158889826	158890188	ENSG00000052795.12|FNIP2|pc|chr4:158889826:158890188:+	0	+
#Deleted in new
chr4	159038601	159038760	ENSG00000164123.6|C4orf45|pc|chr4:159038601:159038760:-	0	-
#Split in new
chr4	159326660	159330010	ENSG00000109756.8|RAPGEF2|pc|chr4:159326660:159330010:+	0	+
#Deleted in new
chr4	15960242	15960611	ENSG00000137441.7|FGFBP2|pc|chr4:15960242:15960611:-	0	-
#Deleted in new
chr4	15960247	15960611	ENSG00000137441.7|FGFBP2|pc|chr4:15960247:15960611:-	0	-
#Deleted in new
chr4	15962437	15963236	ENSG00000137441.7|FGFBP2|pc|chr4:15962437:15963236:-	0	-
#Deleted in new
chr4	15963075	15963159	ENSG00000007062.11|PROM1|pc|chr4:15963075:15963159:-	0	-
#Deleted in new
chr4	15964247	15964423	ENSG00000007062.11|PROM1|pc|chr4:15964247:15964423:-	0	-
#Deleted in new
chr4	159666502	159666658	ENSG00000250488.1|LINC02233|lncRNA|chr4:159666502:159666658:-	0	-
#Deleted in new
chr4	159745721	159745808	ENSG00000250488.1|LINC02233|lncRNA|chr4:159745721:159745808:-	0	-
#Deleted in new
chr4	159777669	159777784	ENSG00000250488.1|LINC02233|lncRNA|chr4:159777669:159777784:-	0	-
#Deleted in new
chr4	15985510	15985651	ENSG00000007062.11|PROM1|pc|chr4:15985510:15985651:-	0	-
#Deleted in new
chr4	160539253	160539840	ENSG00000249425.1|LINC02477|lncRNA|chr4:160539253:160539840:+	0	+
#Deleted in new
chr4	160541990	160542048	ENSG00000249425.1|LINC02477|lncRNA|chr4:160541990:160542048:+	0	+
#Deleted in new
chr4	160545368	160545481	ENSG00000249425.1|LINC02477|lncRNA|chr4:160545368:160545481:+	0	+
#Deleted in new
chr4	160554044	160554131	ENSG00000249425.1|LINC02477|lncRNA|chr4:160554044:160554131:+	0	+
#Deleted in new
chr4	160586245	160586817	ENSG00000249425.1|LINC02477|lncRNA|chr4:160586245:160586817:+	0	+
#Partially deleted in new
chr4	16082104	16082185	ENSG00000007062.11|PROM1|pc|chr4:16082104:16082185:-	0	-
#Deleted in new
chr4	161378952	161379205	ENSG00000249568.1|AC104793.1|lncRNA|chr4:161378952:161379205:+	0	+
#Deleted in new
chr4	161664815	161664904	ENSG00000168843.13|FSTL5|pc|chr4:161664815:161664904:-	0	-
#Partially deleted in new
chr4	16176477	16176790	ENSG00000169762.16|TAPT1|pc|chr4:16176477:16176790:-	0	-
#Deleted in new
chr4	1617914	1618111	ENSG00000174137.12|FAM53A|pc|chr4:1617914:1618111:-	0	-
#Deleted in new
chr4	16182847	16183120	ENSG00000249234.1|AC108063.1|lncRNA|chr4:16182847:16183120:+	0	+
#Deleted in new
chr4	16190046	16190270	ENSG00000169762.16|TAPT1|pc|chr4:16190046:16190270:-	0	-
#Partially deleted in new
chr4	16190338	16191523	ENSG00000169762.16|TAPT1|pc|chr4:16190338:16191523:-	0	-
#Deleted in new
chr4	162022732	162022909	ENSG00000249419.1|AC023136.1|lncRNA|chr4:162022732:162022909:+	0	+
#Deleted in new
chr4	162032577	162032753	ENSG00000249419.1|AC023136.1|lncRNA|chr4:162032577:162032753:+	0	+
#Deleted in new
chr4	162035209	162035399	ENSG00000249419.1|AC023136.1|lncRNA|chr4:162035209:162035399:+	0	+
#Deleted in new
chr4	162041853	162042091	ENSG00000249419.1|AC023136.1|lncRNA|chr4:162041853:162042091:+	0	+
#Deleted in new
chr4	162043182	162043311	ENSG00000249419.1|AC023136.1|lncRNA|chr4:162043182:162043311:+	0	+
#Deleted in new
chr4	16216073	16216170	ENSG00000169762.16|TAPT1|pc|chr4:16216073:16216170:-	0	-
#Split in new
chr4	16256256	16258187	ENSG00000263327.6|TAPT1-AS1|lncRNA|chr4:16256256:16258187:+	0	+
#Deleted in new
chr4	162740667	162740915	ENSG00000248431.1|AC005150.1|lncRNA|chr4:162740667:162740915:+	0	+
#Deleted in new
chr4	162741668	162742048	ENSG00000248431.1|AC005150.1|lncRNA|chr4:162741668:162742048:+	0	+
#Deleted in new
chr4	16288883	16289045	ENSG00000263327.6|TAPT1-AS1|lncRNA|chr4:16288883:16289045:+	0	+
#Partially deleted in new
chr4	163119384	163119965	ENSG00000250027.1|AC022272.1|lncRNA|chr4:163119384:163119965:+	0	+
#Deleted in new
chr4	163119403	163119780	ENSG00000250027.1|AC022272.1|lncRNA|chr4:163119403:163119780:+	0	+
#Deleted in new
chr4	163126707	163127115	ENSG00000145414.8|NAF1|pc|chr4:163126707:163127115:-	0	-
#Partially deleted in new
chr4	163135025	163136320	ENSG00000145414.8|NAF1|pc|chr4:163135025:163136320:-	0	-
#Deleted in new
chr4	16320064	16320140	ENSG00000263327.6|TAPT1-AS1|lncRNA|chr4:16320064:16320140:+	0	+
#Deleted in new
chr4	163494441	163494559	ENSG00000198498.9|TMA16|pc|chr4:163494441:163494559:+	0	+
#Deleted in new
chr4	163494460	163494804	ENSG00000198498.9|TMA16|pc|chr4:163494460:163494804:+	0	+
#Deleted in new
chr4	163494666	163494804	ENSG00000198498.9|TMA16|pc|chr4:163494666:163494804:+	0	+
#Deleted in new
chr4	163494667	163494836	ENSG00000198498.9|TMA16|pc|chr4:163494667:163494836:+	0	+
#Deleted in new
chr4	163494687	163494804	ENSG00000198498.9|TMA16|pc|chr4:163494687:163494804:+	0	+
#Deleted in new
chr4	163494707	163494804	ENSG00000198498.9|TMA16|pc|chr4:163494707:163494804:+	0	+
#Partially deleted in new
chr4	163517071	163517476	ENSG00000198498.9|TMA16|pc|chr4:163517071:163517476:+	0	+
#Partially deleted in new
chr4	163519333	163520539	ENSG00000198498.9|TMA16|pc|chr4:163519333:163520539:+	0	+
#Deleted in new
chr4	163519981	163520375	ENSG00000198498.9|TMA16|pc|chr4:163519981:163520375:+	0	+
#Deleted in new
chr4	16400429	16400533	ENSG00000248138.5|AC097515.1|lncRNA|chr4:16400429:16400533:+	0	+
#Deleted in new
chr4	164055176	164055274	ENSG00000145416.13|MARCH1|pc|chr4:164055176:164055274:-	0	-
#Deleted in new
chr4	164135419	164135497	ENSG00000145416.13|MARCH1|pc|chr4:164135419:164135497:-	0	-
#Deleted in new
chr4	16421059	16421133	ENSG00000248138.5|AC097515.1|lncRNA|chr4:16421059:16421133:+	0	+
#Deleted in new
chr4	164234832	164234916	ENSG00000145416.13|MARCH1|pc|chr4:164234832:164234916:-	0	-
#Deleted in new
chr4	16426364	16426440	ENSG00000248138.5|AC097515.1|lncRNA|chr4:16426364:16426440:+	0	+
#Deleted in new
chr4	164329929	164330156	ENSG00000145416.13|MARCH1|pc|chr4:164329929:164330156:-	0	-
#Deleted in new
chr4	1644188	1644342	ENSG00000174137.12|FAM53A|pc|chr4:1644188:1644342:-	0	-
#Deleted in new
chr4	1644188	1644953	ENSG00000174137.12|FAM53A|pc|chr4:1644188:1644953:-	0	-
#Partially deleted in new
chr4	164878919	164879256	ENSG00000248329.5|APELA|pc|chr4:164878919:164879256:+	0	+
#Partially deleted in new
chr4	164895415	164897523	ENSG00000248329.5|APELA|pc|chr4:164895415:164897523:+	0	+
#Deleted in new
chr4	164896118	164896239	ENSG00000248329.5|APELA|pc|chr4:164896118:164896239:+	0	+
#Deleted in new
chr4	164896463	164896985	ENSG00000248329.5|APELA|pc|chr4:164896463:164896985:+	0	+
#Deleted in new
chr4	164896807	164896985	ENSG00000248329.5|APELA|pc|chr4:164896807:164896985:+	0	+
#Deleted in new
chr4	164898725	164898934	ENSG00000248329.5|APELA|pc|chr4:164898725:164898934:+	0	+
#Deleted in new
chr4	164898725	164898965	ENSG00000248329.5|APELA|pc|chr4:164898725:164898965:+	0	+
#Deleted in new
chr4	164954445	164954768	ENSG00000183439.7|TRIM61|pc|chr4:164954445:164954768:-	0	-
#Deleted in new
chr4	164954975	164955096	ENSG00000183439.7|TRIM61|pc|chr4:164954975:164955096:-	0	-
#Deleted in new
chr4	164956947	164959122	ENSG00000250486.3|FAM218A|pc|chr4:164956947:164959122:+	0	+
#Deleted in new
chr4	164976687	164976825	ENSG00000183439.7|TRIM61|pc|chr4:164976687:164976825:-	0	-
#Deleted in new
chr4	164977530	164977668	ENSG00000183439.7|TRIM61|pc|chr4:164977530:164977668:-	0	-
#Deleted in new
chr4	165007085	165007215	ENSG00000250887.1|AC106872.10|lncRNA|chr4:165007085:165007215:-	0	-
#Deleted in new
chr4	165007342	165007959	ENSG00000250887.1|AC106872.10|lncRNA|chr4:165007342:165007959:-	0	-
#Deleted in new
chr4	165031952	165032112	ENSG00000176979.12|TRIM60|pc|chr4:165031952:165032112:+	0	+
#Deleted in new
chr4	165031999	165032112	ENSG00000176979.12|TRIM60|pc|chr4:165031999:165032112:+	0	+
#Deleted in new
chr4	165039197	165039252	ENSG00000176979.12|TRIM60|pc|chr4:165039197:165039252:+	0	+
#Deleted in new
chr4	165039200	165039252	ENSG00000176979.12|TRIM60|pc|chr4:165039200:165039252:+	0	+
#Deleted in new
chr4	165039424	165039615	ENSG00000176979.12|TRIM60|pc|chr4:165039424:165039615:+	0	+
#Deleted in new
chr4	165039441	165039615	ENSG00000176979.12|TRIM60|pc|chr4:165039441:165039615:+	0	+
#Split in new
chr4	165070607	165079796	ENSG00000170088.13|TMEM192|pc|chr4:165070607:165079796:-	0	-
#Deleted in new
chr4	165111648	165111679	ENSG00000170088.13|TMEM192|pc|chr4:165111648:165111679:-	0	-
#Deleted in new
chr4	165182541	165182628	ENSG00000170088.13|TMEM192|pc|chr4:165182541:165182628:-	0	-
#Deleted in new
chr4	165321311	165321375	ENSG00000109466.13|KLHL2|pc|chr4:165321311:165321375:+	0	+
#Duplicated in new
chr4	165340220	165340640	ENSG00000052802.12|MSMO1|pc|chr4:165340220:165340640:+	0	+
#Deleted in new
chr4	165361193	165361311	ENSG00000109472.13|CPE|pc|chr4:165361193:165361311:+	0	+
#Deleted in new
chr4	165381280	165381474	ENSG00000109472.13|CPE|pc|chr4:165381280:165381474:+	0	+
#Deleted in new
chr4	165415084	165415246	ENSG00000109472.13|CPE|pc|chr4:165415084:165415246:+	0	+
#Deleted in new
chr4	165754800	165754986	ENSG00000249500.1|LINC01179|lncRNA|chr4:165754800:165754986:+	0	+
#Deleted in new
chr4	166030452	166030958	ENSG00000038295.7|TLL1|pc|chr4:166030452:166030958:+	0	+
#Deleted in new
chr4	16626736	16626993	ENSG00000169744.12|LDB2|pc|chr4:16626736:16626993:-	0	-
#Deleted in new
chr4	166388700	166389429	ENSG00000249675.1|AC097487.1|lncRNA|chr4:166388700:166389429:-	0	-
#Deleted in new
chr4	166509557	166509610	ENSG00000249675.1|AC097487.1|lncRNA|chr4:166509557:166509610:-	0	-
#Deleted in new
chr4	16651164	16651218	ENSG00000169744.12|LDB2|pc|chr4:16651164:16651218:-	0	-
#Deleted in new
chr4	166522905	166523022	ENSG00000249675.1|AC097487.1|lncRNA|chr4:166522905:166523022:-	0	-
#Deleted in new
chr4	166526084	166526119	ENSG00000249675.1|AC097487.1|lncRNA|chr4:166526084:166526119:-	0	-
#Deleted in new
chr4	166882822	166883267	ENSG00000196104.10|SPOCK3|pc|chr4:166882822:166883267:-	0	-
#Deleted in new
chr4	167011221	167011302	ENSG00000196104.10|SPOCK3|pc|chr4:167011221:167011302:-	0	-
#Deleted in new
chr4	167102437	167102557	ENSG00000196104.10|SPOCK3|pc|chr4:167102437:167102557:-	0	-
#Deleted in new
chr4	167119793	167119874	ENSG00000196104.10|SPOCK3|pc|chr4:167119793:167119874:-	0	-
#Deleted in new
chr4	167308175	167308296	ENSG00000250150.1|AC079349.1|lncRNA|chr4:167308175:167308296:-	0	-
#Deleted in new
chr4	16741454	16741536	ENSG00000169744.12|LDB2|pc|chr4:16741454:16741536:-	0	-
#Deleted in new
chr4	16750849	16750927	ENSG00000169744.12|LDB2|pc|chr4:16750849:16750927:-	0	-
#Deleted in new
chr4	167946673	167946843	ENSG00000248601.1|AC116634.1|lncRNA|chr4:167946673:167946843:-	0	-
#Deleted in new
chr4	168263527	168263671	ENSG00000137628.16|DDX60|pc|chr4:168263527:168263671:-	0	-
#Partially deleted in new
chr4	168356734	168358276	ENSG00000181381.13|DDX60L|pc|chr4:168356734:168358276:-	0	-
#Partially deleted in new
chr4	168361148	168361439	ENSG00000181381.13|DDX60L|pc|chr4:168361148:168361439:-	0	-
#Deleted in new
chr4	1683693	1684127	ENSG00000174137.12|FAM53A|pc|chr4:1683693:1684127:-	0	-
#Deleted in new
chr4	168377727	168377843	ENSG00000181381.13|DDX60L|pc|chr4:168377727:168377843:-	0	-
#Partially deleted in new
chr4	168379725	168380806	ENSG00000181381.13|DDX60L|pc|chr4:168379725:168380806:-	0	-
#Deleted in new
chr4	168390101	168390530	ENSG00000181381.13|DDX60L|pc|chr4:168390101:168390530:-	0	-
#Deleted in new
chr4	168390294	168390530	ENSG00000181381.13|DDX60L|pc|chr4:168390294:168390530:-	0	-
#Partially deleted in new
chr4	168395715	168396124	ENSG00000181381.13|DDX60L|pc|chr4:168395715:168396124:-	0	-
#Deleted in new
chr4	1683957	1683991	ENSG00000174137.12|FAM53A|pc|chr4:1683957:1683991:-	0	-
#Deleted in new
chr4	1684232	1684261	ENSG00000174137.12|FAM53A|pc|chr4:1684232:1684261:-	0	-
#Deleted in new
chr4	1684232	1684302	ENSG00000174137.12|FAM53A|pc|chr4:1684232:1684302:-	0	-
#Deleted in new
chr4	168468747	168470837	ENSG00000181381.13|DDX60L|pc|chr4:168468747:168470837:-	0	-
#Deleted in new
chr4	168470703	168470837	ENSG00000181381.13|DDX60L|pc|chr4:168470703:168470837:-	0	-
#Deleted in new
chr4	168472695	168472809	ENSG00000181381.13|DDX60L|pc|chr4:168472695:168472809:-	0	-
#Deleted in new
chr4	168475995	168476120	ENSG00000181381.13|DDX60L|pc|chr4:168475995:168476120:-	0	-
#Deleted in new
chr4	168476066	168476120	ENSG00000181381.13|DDX60L|pc|chr4:168476066:168476120:-	0	-
#Deleted in new
chr4	168480194	168480298	ENSG00000181381.13|DDX60L|pc|chr4:168480194:168480298:-	0	-
#Partially deleted in new
chr4	168480376	168480439	ENSG00000181381.13|DDX60L|pc|chr4:168480376:168480439:-	0	-
#Deleted in new
chr4	168490357	168490450	ENSG00000181381.13|DDX60L|pc|chr4:168490357:168490450:-	0	-
#Deleted in new
chr4	168506078	168506133	ENSG00000181381.13|DDX60L|pc|chr4:168506078:168506133:-	0	-
#Deleted in new
chr4	168507359	168507698	ENSG00000129116.17|PALLD|pc|chr4:168507359:168507698:+	0	+
#Deleted in new
chr4	168536547	168536596	ENSG00000181381.13|DDX60L|pc|chr4:168536547:168536596:-	0	-
#Deleted in new
chr4	168832736	168832937	ENSG00000249609.1|AC080188.2|lncRNA|chr4:168832736:168832937:-	0	-
#Deleted in new
chr4	168863769	168863973	ENSG00000145439.11|CBR4|pc|chr4:168863769:168863973:-	0	-
#Deleted in new
chr4	168863792	168863973	ENSG00000145439.11|CBR4|pc|chr4:168863792:168863973:-	0	-
#Deleted in new
chr4	169008951	169008999	ENSG00000145439.11|CBR4|pc|chr4:169008951:169008999:-	0	-
#Deleted in new
chr4	169008951	169009054	ENSG00000145439.11|CBR4|pc|chr4:169008951:169009054:-	0	-
#Deleted in new
chr4	169010429	169010456	ENSG00000251445.1|AC021151.1|lncRNA|chr4:169010429:169010456:+	0	+
#Partially deleted in new
chr4	169010783	169010939	ENSG00000251445.1|AC021151.1|lncRNA|chr4:169010783:169010939:+	0	+
#Partially deleted in new
chr4	169217221	169217450	ENSG00000251171.1|AC096741.2|lncRNA|chr4:169217221:169217450:+	0	+
#Deleted in new
chr4	169506627	169506734	ENSG00000137601.16|NEK1|pc|chr4:169506627:169506734:-	0	-
#Deleted in new
chr4	169642707	169643168	ENSG00000109572.13|CLCN3|pc|chr4:169642707:169643168:+	0	+
#Deleted in new
chr4	169663113	169663114	ENSG00000109572.13|CLCN3|pc|chr4:169663113:169663114:+	0	+
#Deleted in new
chr4	169663526	169663617	ENSG00000109572.13|CLCN3|pc|chr4:169663526:169663617:+	0	+
#Split in new
chr4	169917760	169921697	ENSG00000248319.1|LINC02275|lncRNA|chr4:169917760:169921697:-	0	-
#Deleted in new
chr4	169933990	169934066	ENSG00000248319.1|LINC02275|lncRNA|chr4:169933990:169934066:-	0	-
#Deleted in new
chr4	169942705	169942843	ENSG00000248319.1|LINC02275|lncRNA|chr4:169942705:169942843:-	0	-
#Deleted in new
chr4	169975815	169975902	ENSG00000248319.1|LINC02275|lncRNA|chr4:169975815:169975902:-	0	-
#Deleted in new
chr4	169981746	169981888	ENSG00000249955.1|AC084866.1|lncRNA|chr4:169981746:169981888:+	0	+
#Partially deleted in new
chr4	170032061	170032212	ENSG00000198948.11|MFAP3L|pc|chr4:170032061:170032212:-	0	-
#Partially deleted in new
chr4	170032061	170032251	ENSG00000198948.11|MFAP3L|pc|chr4:170032061:170032251:-	0	-
#Deleted in new
chr4	170091593	170091699	ENSG00000109576.13|AADAT|pc|chr4:170091593:170091699:-	0	-
#Deleted in new
chr4	170273918	170273964	ENSG00000250266.1|LINC01612|lncRNA|chr4:170273918:170273964:+	0	+
#Deleted in new
chr4	170276581	170276675	ENSG00000250266.1|LINC01612|lncRNA|chr4:170276581:170276675:+	0	+
#Deleted in new
chr4	17060706	17060805	ENSG00000249998.1|AC106894.1|lncRNA|chr4:17060706:17060805:-	0	-
#Deleted in new
chr4	17073848	17073903	ENSG00000249998.1|AC106894.1|lncRNA|chr4:17073848:17073903:-	0	-
#Deleted in new
chr4	170742468	170743028	ENSG00000250968.1|LINC02382|lncRNA|chr4:170742468:170743028:-	0	-
#Deleted in new
chr4	170743664	170743718	ENSG00000250968.1|LINC02382|lncRNA|chr4:170743664:170743718:-	0	-
#Deleted in new
chr4	171040601	171040834	ENSG00000248872.1|LINC02431|lncRNA|chr4:171040601:171040834:+	0	+
#Deleted in new
chr4	171040607	171040834	ENSG00000248872.1|LINC02431|lncRNA|chr4:171040607:171040834:+	0	+
#Deleted in new
chr4	171055354	171055392	ENSG00000248872.1|LINC02431|lncRNA|chr4:171055354:171055392:+	0	+
#Deleted in new
chr4	171055354	171055417	ENSG00000248872.1|LINC02431|lncRNA|chr4:171055354:171055417:+	0	+
#Deleted in new
chr4	171055827	171055898	ENSG00000248872.1|LINC02431|lncRNA|chr4:171055827:171055898:+	0	+
#Deleted in new
chr4	171055827	171059163	ENSG00000248872.1|LINC02431|lncRNA|chr4:171055827:171059163:+	0	+
#Deleted in new
chr4	171056204	171056338	ENSG00000248872.1|LINC02431|lncRNA|chr4:171056204:171056338:+	0	+
#Deleted in new
chr4	171057876	171059163	ENSG00000248872.1|LINC02431|lncRNA|chr4:171057876:171059163:+	0	+
#Deleted in new
chr4	1712820	1713622	ENSG00000270195.1|AC016773.1|lncRNA|chr4:1712820:1713622:+	0	+
#Partially deleted in new
chr4	171289474	171294229	ENSG00000248339.1|LINC02504|lncRNA|chr4:171289474:171294229:-	0	-
#Deleted in new
chr4	171298073	171298267	ENSG00000248339.1|LINC02504|lncRNA|chr4:171298073:171298267:-	0	-
#Deleted in new
chr4	171552999	171553225	ENSG00000251176.1|AC074254.1|lncRNA|chr4:171552999:171553225:-	0	-
#Deleted in new
chr4	171563963	171564085	ENSG00000251176.1|AC074254.1|lncRNA|chr4:171563963:171564085:-	0	-
#Deleted in new
chr4	171564211	171564267	ENSG00000251176.1|AC074254.1|lncRNA|chr4:171564211:171564267:-	0	-
#Deleted in new
chr4	171604057	171604152	ENSG00000249297.1|LINC02174|lncRNA|chr4:171604057:171604152:-	0	-
#Deleted in new
chr4	171620495	171620575	ENSG00000249297.1|LINC02174|lncRNA|chr4:171620495:171620575:-	0	-
#Deleted in new
chr4	171635984	171636077	ENSG00000249297.1|LINC02174|lncRNA|chr4:171635984:171636077:-	0	-
#Deleted in new
chr4	171638659	171638763	ENSG00000249297.1|LINC02174|lncRNA|chr4:171638659:171638763:-	0	-
#Deleted in new
chr4	17181851	17181896	ENSG00000250819.1|LINC02493|lncRNA|chr4:17181851:17181896:-	0	-
#Deleted in new
chr4	1721784	1721916	ENSG00000013810.18|TACC3|pc|chr4:1721784:1721916:+	0	+
#Deleted in new
chr4	172425283	172425326	ENSG00000174473.15|GALNTL6|pc|chr4:172425283:172425326:+	0	+
#Deleted in new
chr4	1727707	1728066	ENSG00000013810.18|TACC3|pc|chr4:1727707:1728066:+	0	+
#Deleted in new
chr4	1727707	1728094	ENSG00000013810.18|TACC3|pc|chr4:1727707:1728094:+	0	+
#Deleted in new
chr4	1727707	1728232	ENSG00000013810.18|TACC3|pc|chr4:1727707:1728232:+	0	+
#Deleted in new
chr4	1727707	1728787	ENSG00000013810.18|TACC3|pc|chr4:1727707:1728787:+	0	+
#Deleted in new
chr4	1728403	1728787	ENSG00000013810.18|TACC3|pc|chr4:1728403:1728787:+	0	+
#Deleted in new
chr4	1730387	1730388	ENSG00000013810.18|TACC3|pc|chr4:1730387:1730388:+	0	+
#Deleted in new
chr4	173144235	173145511	ENSG00000245213.6|AC105285.1|lncRNA|chr4:173144235:173145511:-	0	-
#Deleted in new
chr4	173166068	173166299	ENSG00000245213.6|AC105285.1|lncRNA|chr4:173166068:173166299:-	0	-
#Deleted in new
chr4	173166123	173166299	ENSG00000245213.6|AC105285.1|lncRNA|chr4:173166123:173166299:-	0	-
#Deleted in new
chr4	173166644	173166790	ENSG00000245213.6|AC105285.1|lncRNA|chr4:173166644:173166790:-	0	-
#Deleted in new
chr4	173282434	173282470	ENSG00000109586.11|GALNT7|pc|chr4:173282434:173282470:+	0	+
#Partially deleted in new
chr4	173326668	173326720	ENSG00000248774.1|AC097534.1|lncRNA|chr4:173326668:173326720:-	0	-
#Deleted in new
chr4	173329619	173329694	ENSG00000248774.1|AC097534.1|lncRNA|chr4:173329619:173329694:-	0	-
#Deleted in new
chr4	173363779	173364198	ENSG00000272870.1|AC097534.2|lncRNA|chr4:173363779:173364198:-	0	-
#Deleted in new
chr4	173363993	173364198	ENSG00000272870.1|AC097534.2|lncRNA|chr4:173363993:173364198:-	0	-
#Partially deleted in new
chr4	173367894	173369815	ENSG00000272870.1|AC097534.2|lncRNA|chr4:173367894:173369815:-	0	-
#Deleted in new
chr4	173369361	173369610	ENSG00000272870.1|AC097534.2|lncRNA|chr4:173369361:173369610:-	0	-
#Deleted in new
chr4	173369433	173369610	ENSG00000272870.1|AC097534.2|lncRNA|chr4:173369433:173369610:-	0	-
#Partially deleted in new
chr4	173369433	173369815	ENSG00000272870.1|AC097534.2|lncRNA|chr4:173369433:173369815:-	0	-
#Deleted in new
chr4	173406259	173406380	ENSG00000164106.7|SCRG1|pc|chr4:173406259:173406380:-	0	-
#Deleted in new
chr4	173538062	173538137	ENSG00000237125.8|HAND2-AS1|lncRNA|chr4:173538062:173538137:+	0	+
#Deleted in new
chr4	173538062	173538180	ENSG00000237125.8|HAND2-AS1|lncRNA|chr4:173538062:173538180:+	0	+
#Partially deleted in new
chr4	173591072	173591324	ENSG00000237125.8|HAND2-AS1|lncRNA|chr4:173591072:173591324:+	0	+
#Deleted in new
chr4	173593671	173594556	ENSG00000261672.1|AC079789.1|lncRNA|chr4:173593671:173594556:+	0	+
#Partially deleted in new
chr4	1737597	1738350	ENSG00000013810.18|TACC3|pc|chr4:1737597:1738350:+	0	+
#Deleted in new
chr4	173896393	173896725	ENSG00000250043.1|AC106895.1|lncRNA|chr4:173896393:173896725:-	0	-
#Deleted in new
chr4	173897251	173897320	ENSG00000250708.1|LINC02269|lncRNA|chr4:173897251:173897320:+	0	+
#Deleted in new
chr4	173897272	173897320	ENSG00000250708.1|LINC02269|lncRNA|chr4:173897272:173897320:+	0	+
#Deleted in new
chr4	173911800	173911895	ENSG00000250043.1|AC106895.1|lncRNA|chr4:173911800:173911895:-	0	-
#Deleted in new
chr4	173911800	173911942	ENSG00000250043.1|AC106895.1|lncRNA|chr4:173911800:173911942:-	0	-
#Deleted in new
chr4	173925877	173925957	ENSG00000250708.1|LINC02269|lncRNA|chr4:173925877:173925957:+	0	+
#Deleted in new
chr4	173927866	173927990	ENSG00000251216.1|AC106895.2|lncRNA|chr4:173927866:173927990:-	0	-
#Partially deleted in new
chr4	1739350	1742121	ENSG00000013810.18|TACC3|pc|chr4:1739350:1742121:+	0	+
#Deleted in new
chr4	173982618	173982670	ENSG00000251216.1|AC106895.2|lncRNA|chr4:173982618:173982670:-	0	-
#Deleted in new
chr4	173986692	173986799	ENSG00000251216.1|AC106895.2|lncRNA|chr4:173986692:173986799:-	0	-
#Deleted in new
chr4	174094659	174095453	ENSG00000248174.5|LINC02268|lncRNA|chr4:174094659:174095453:-	0	-
#Deleted in new
chr4	174096731	174096783	ENSG00000248174.5|LINC02268|lncRNA|chr4:174096731:174096783:-	0	-
#Deleted in new
chr4	174097622	174097829	ENSG00000248174.5|LINC02268|lncRNA|chr4:174097622:174097829:-	0	-
#Deleted in new
chr4	174097754	174097829	ENSG00000248174.5|LINC02268|lncRNA|chr4:174097754:174097829:-	0	-
#Deleted in new
chr4	174168895	174168913	ENSG00000251213.1|AC012055.2|lncRNA|chr4:174168895:174168913:-	0	-
#Deleted in new
chr4	174297965	174298062	ENSG00000164118.12|CEP44|pc|chr4:174297965:174298062:+	0	+
#Deleted in new
chr4	174318834	174319087	ENSG00000164118.12|CEP44|pc|chr4:174318834:174319087:+	0	+
#Deleted in new
chr4	174354853	174354950	ENSG00000249875.1|AC116616.1|lncRNA|chr4:174354853:174354950:-	0	-
#Deleted in new
chr4	174536639	174536881	ENSG00000251584.1|AC096751.2|lncRNA|chr4:174536639:174536881:+	0	+
#Deleted in new
chr4	174538131	174538212	ENSG00000251584.1|AC096751.2|lncRNA|chr4:174538131:174538212:+	0	+
#Deleted in new
chr4	174712514	174712795	ENSG00000145451.12|GLRA3|pc|chr4:174712514:174712795:-	0	-
#Deleted in new
chr4	174834848	174834937	ENSG00000168594.15|ADAM29|pc|chr4:174834848:174834937:+	0	+
#Deleted in new
chr4	174856530	174856607	ENSG00000168594.15|ADAM29|pc|chr4:174856530:174856607:+	0	+
#Deleted in new
chr4	174868805	174870787	ENSG00000168594.15|ADAM29|pc|chr4:174868805:174870787:+	0	+
#Deleted in new
chr4	174930985	174931174	ENSG00000168594.15|ADAM29|pc|chr4:174930985:174931174:+	0	+
#Deleted in new
chr4	174930985	174931303	ENSG00000168594.15|ADAM29|pc|chr4:174930985:174931303:+	0	+
#Deleted in new
chr4	174930985	174931398	ENSG00000168594.15|ADAM29|pc|chr4:174930985:174931398:+	0	+
#Deleted in new
chr4	174936932	174936977	ENSG00000168594.15|ADAM29|pc|chr4:174936932:174936977:+	0	+
#Deleted in new
chr4	174936932	174937013	ENSG00000168594.15|ADAM29|pc|chr4:174936932:174937013:+	0	+
#Deleted in new
chr4	174979337	174979381	ENSG00000250431.1|AC105914.2|lncRNA|chr4:174979337:174979381:-	0	-
#Partially deleted in new
chr4	17509933	17509975	ENSG00000151552.11|QDPR|pc|chr4:17509933:17509975:-	0	-
#Deleted in new
chr4	175346357	175347000	ENSG00000248551.1|AC095050.1|lncRNA|chr4:175346357:175347000:-	0	-
#Deleted in new
chr4	175356219	175356341	ENSG00000248551.1|AC095050.1|lncRNA|chr4:175356219:175356341:-	0	-
#Deleted in new
chr4	175402970	175403110	ENSG00000248551.1|AC095050.1|lncRNA|chr4:175402970:175403110:-	0	-
#Deleted in new
chr4	175458288	175458514	ENSG00000249945.1|AC131094.1|lncRNA|chr4:175458288:175458514:-	0	-
#Deleted in new
chr4	175464622	175464723	ENSG00000249945.1|AC131094.1|lncRNA|chr4:175464622:175464723:-	0	-
#Deleted in new
chr4	175466534	175466697	ENSG00000249945.1|AC131094.1|lncRNA|chr4:175466534:175466697:-	0	-
#Deleted in new
chr4	175642023	175642082	ENSG00000150625.16|GPM6A|pc|chr4:175642023:175642082:-	0	-
#Deleted in new
chr4	175654215	175654323	ENSG00000150625.16|GPM6A|pc|chr4:175654215:175654323:-	0	-
#Deleted in new
chr4	175781208	175781297	ENSG00000150625.16|GPM6A|pc|chr4:175781208:175781297:-	0	-
#Deleted in new
chr4	175786871	175786917	ENSG00000150625.16|GPM6A|pc|chr4:175786871:175786917:-	0	-
#Deleted in new
chr4	175787335	175787387	ENSG00000150625.16|GPM6A|pc|chr4:175787335:175787387:-	0	-
#Deleted in new
chr4	175787335	175787425	ENSG00000150625.16|GPM6A|pc|chr4:175787335:175787425:-	0	-
#Deleted in new
chr4	175787335	175787676	ENSG00000150625.16|GPM6A|pc|chr4:175787335:175787676:-	0	-
#Deleted in new
chr4	175787778	175788055	ENSG00000150625.16|GPM6A|pc|chr4:175787778:175788055:-	0	-
#Deleted in new
chr4	175787778	175788079	ENSG00000150625.16|GPM6A|pc|chr4:175787778:175788079:-	0	-
#Deleted in new
chr4	175795835	175795928	ENSG00000249106.1|AC097537.1|lncRNA|chr4:175795835:175795928:+	0	+
#Deleted in new
chr4	175800769	175800986	ENSG00000249106.1|AC097537.1|lncRNA|chr4:175800769:175800986:+	0	+
#Deleted in new
chr4	175808600	175808762	ENSG00000249106.1|AC097537.1|lncRNA|chr4:175808600:175808762:+	0	+
#Deleted in new
chr4	175960743	175960759	ENSG00000150625.16|GPM6A|pc|chr4:175960743:175960759:-	0	-
#Deleted in new
chr4	175961236	175961341	ENSG00000150625.16|GPM6A|pc|chr4:175961236:175961341:-	0	-
#Deleted in new
chr4	176068219	176068386	ENSG00000150627.15|WDR17|pc|chr4:176068219:176068386:+	0	+
#Deleted in new
chr4	17613931	17614038	ENSG00000249502.1|AC006160.1|lncRNA|chr4:17613931:17614038:-	0	-
#Partially deleted in new
chr4	176193452	176194877	ENSG00000150628.6|SPATA4|pc|chr4:176193452:176194877:-	0	-
#Deleted in new
chr4	17625655	17625845	ENSG00000118579.12|MED28|pc|chr4:17625655:17625845:+	0	+
#Deleted in new
chr4	176275795	176275906	ENSG00000164122.8|ASB5|pc|chr4:176275795:176275906:-	0	-
#Deleted in new
chr4	17628005	17628170	ENSG00000118579.12|MED28|pc|chr4:17628005:17628170:+	0	+
#Partially deleted in new
chr4	17629305	17632625	ENSG00000047662.4|FAM184B|pc|chr4:17629305:17632625:-	0	-
#Deleted in new
chr4	176308267	176308467	ENSG00000248980.1|AC019163.1|lncRNA|chr4:176308267:176308467:-	0	-
#Deleted in new
chr4	176311487	176311583	ENSG00000248980.1|AC019163.1|lncRNA|chr4:176311487:176311583:-	0	-
#Deleted in new
chr4	176669620	176669709	ENSG00000248388.5|AC093801.1|lncRNA|chr4:176669620:176669709:+	0	+
#Deleted in new
chr4	176705902	176706069	ENSG00000248388.5|AC093801.1|lncRNA|chr4:176705902:176706069:+	0	+
#Deleted in new
chr4	176705902	176706145	ENSG00000248388.5|AC093801.1|lncRNA|chr4:176705902:176706145:+	0	+
#Deleted in new
chr4	176875701	176875853	ENSG00000250263.1|LINC02509|lncRNA|chr4:176875701:176875853:+	0	+
#Deleted in new
chr4	177248195	177248307	ENSG00000249008.1|AC097518.1|lncRNA|chr4:177248195:177248307:-	0	-
#Deleted in new
chr4	177444978	177445443	ENSG00000250131.1|AC078881.1|lncRNA|chr4:177444978:177445443:+	0	+
#Deleted in new
chr4	177451474	177451590	ENSG00000250131.1|AC078881.1|lncRNA|chr4:177451474:177451590:+	0	+
#Deleted in new
chr4	177593471	177593546	ENSG00000250131.1|AC078881.1|lncRNA|chr4:177593471:177593546:+	0	+
#Deleted in new
chr4	177596460	177596531	ENSG00000250131.1|AC078881.1|lncRNA|chr4:177596460:177596531:+	0	+
#Deleted in new
chr4	177623658	177623802	ENSG00000250131.1|AC078881.1|lncRNA|chr4:177623658:177623802:+	0	+
#Deleted in new
chr4	177691004	177691068	ENSG00000251416.1|AC103879.1|lncRNA|chr4:177691004:177691068:-	0	-
#Partially deleted in new
chr4	177728756	177729017	ENSG00000231171.3|LINC01098|lncRNA|chr4:177728756:177729017:+	0	+
#Deleted in new
chr4	177729637	177729664	ENSG00000251504.1|LINC01099|lncRNA|chr4:177729637:177729664:-	0	-
#Deleted in new
chr4	177732366	177732479	ENSG00000231171.3|LINC01098|lncRNA|chr4:177732366:177732479:+	0	+
#Deleted in new
chr4	177903383	177903948	ENSG00000251504.1|LINC01099|lncRNA|chr4:177903383:177903948:-	0	-
#Deleted in new
chr4	177966674	177966778	ENSG00000231171.3|LINC01098|lncRNA|chr4:177966674:177966778:+	0	+
#Deleted in new
chr4	17809424	17809692	ENSG00000163257.10|DCAF16|pc|chr4:17809424:17809692:-	0	-
#Deleted in new
chr4	179389133	179389501	ENSG00000250993.1|AC020551.1|lncRNA|chr4:179389133:179389501:-	0	-
#Deleted in new
chr4	179390029	179390089	ENSG00000250993.1|AC020551.1|lncRNA|chr4:179390029:179390089:-	0	-
#Deleted in new
chr4	180740843	180740946	ENSG00000249883.1|AC104803.1|lncRNA|chr4:180740843:180740946:-	0	-
#Deleted in new
chr4	181874437	181874545	ENSG00000177822.7|AC098864.1|lncRNA|chr4:181874437:181874545:-	0	-
#Deleted in new
chr4	181975155	181976536	ENSG00000177822.7|AC098864.1|lncRNA|chr4:181975155:181976536:-	0	-
#Deleted in new
chr4	182012661	182012819	ENSG00000177822.7|AC098864.1|lncRNA|chr4:182012661:182012819:-	0	-
#Deleted in new
chr4	182243428	182243476	ENSG00000218336.8|TENM3|pc|chr4:182243428:182243476:+	0	+
#Deleted in new
chr4	182911222	182911503	ENSG00000129187.14|DCTD|pc|chr4:182911222:182911503:-	0	-
#Partially deleted in new
chr4	182916285	182916627	ENSG00000129187.14|DCTD|pc|chr4:182916285:182916627:-	0	-
#Partially deleted in new
chr4	182916418	182916539	ENSG00000129187.14|DCTD|pc|chr4:182916418:182916539:-	0	-
#Partially deleted in new
chr4	182917287	182917345	ENSG00000129187.14|DCTD|pc|chr4:182917287:182917345:-	0	-
#Partially deleted in new
chr4	182917310	182917361	ENSG00000129187.14|DCTD|pc|chr4:182917310:182917361:-	0	-
#Deleted in new
chr4	183203515	183203603	ENSG00000151718.15|WWC2|pc|chr4:183203515:183203603:+	0	+
#Partially deleted in new
chr4	1833073	1834982	ENSG00000168924.14|LETM1|pc|chr4:1833073:1834982:-	0	-
#Partially deleted in new
chr4	1834099	1834982	ENSG00000168924.14|LETM1|pc|chr4:1834099:1834982:-	0	-
#Partially deleted in new
chr4	1834205	1834982	ENSG00000168924.14|LETM1|pc|chr4:1834205:1834982:-	0	-
#Deleted in new
chr4	183497559	183497669	ENSG00000232648.3|AC107214.1|lncRNA|chr4:183497559:183497669:-	0	-
#Deleted in new
chr4	1839297	1839342	ENSG00000168924.14|LETM1|pc|chr4:1839297:1839342:-	0	-
#Deleted in new
chr4	184221132	184221230	ENSG00000164303.10|ENPP6|pc|chr4:184221132:184221230:-	0	-
#Deleted in new
chr4	1843005	1843211	ENSG00000168924.14|LETM1|pc|chr4:1843005:1843211:-	0	-
#Deleted in new
chr4	184340755	184342053	ENSG00000180712.3|LINC02363|lncRNA|chr4:184340755:184342053:-	0	-
#Deleted in new
chr4	184341689	184342053	ENSG00000180712.3|LINC02363|lncRNA|chr4:184341689:184342053:-	0	-
#Deleted in new
chr4	184350088	184350278	ENSG00000180712.3|LINC02363|lncRNA|chr4:184350088:184350278:-	0	-
#Deleted in new
chr4	184353312	184353977	ENSG00000180712.3|LINC02363|lncRNA|chr4:184353312:184353977:-	0	-
#Deleted in new
chr4	184365182	184365646	ENSG00000249096.6|LINC02362|lncRNA|chr4:184365182:184365646:-	0	-
#Deleted in new
chr4	184365560	184365646	ENSG00000249096.6|LINC02362|lncRNA|chr4:184365560:184365646:-	0	-
#Deleted in new
chr4	184365825	184365947	ENSG00000249096.6|LINC02362|lncRNA|chr4:184365825:184365947:-	0	-
#Partially deleted in new
chr4	184368412	184369870	ENSG00000249096.6|LINC02362|lncRNA|chr4:184368412:184369870:-	0	-
#Deleted in new
chr4	184371668	184371807	ENSG00000249096.6|LINC02362|lncRNA|chr4:184371668:184371807:-	0	-
#Deleted in new
chr4	184372338	184372480	ENSG00000249096.6|LINC02362|lncRNA|chr4:184372338:184372480:-	0	-
#Deleted in new
chr4	184372406	184372480	ENSG00000249096.6|LINC02362|lncRNA|chr4:184372406:184372480:-	0	-
#Deleted in new
chr4	184376440	184376544	ENSG00000249096.6|LINC02362|lncRNA|chr4:184376440:184376544:-	0	-
#Deleted in new
chr4	184378964	184379129	ENSG00000249096.6|LINC02362|lncRNA|chr4:184378964:184379129:-	0	-
#Deleted in new
chr4	184428673	184428797	ENSG00000168310.10|IRF2|pc|chr4:184428673:184428797:-	0	-
#Deleted in new
chr4	184509236	184509325	ENSG00000271538.5|LINC02427|lncRNA|chr4:184509236:184509325:-	0	-
#Deleted in new
chr4	184509495	184509688	ENSG00000271538.5|LINC02427|lncRNA|chr4:184509495:184509688:-	0	-
#Deleted in new
chr4	184618888	184619317	ENSG00000254233.1|LINC02365|lncRNA|chr4:184618888:184619317:-	0	-
#Deleted in new
chr4	184619045	184619314	ENSG00000254233.1|LINC02365|lncRNA|chr4:184619045:184619314:-	0	-
#Deleted in new
chr4	184623421	184623458	ENSG00000254233.1|LINC02365|lncRNA|chr4:184623421:184623458:-	0	-
#Deleted in new
chr4	184624738	184624879	ENSG00000254233.1|LINC02365|lncRNA|chr4:184624738:184624879:-	0	-
#Deleted in new
chr4	184624738	184624942	ENSG00000254233.1|LINC02365|lncRNA|chr4:184624738:184624942:-	0	-
#Deleted in new
chr4	184624738	184625030	ENSG00000254233.1|LINC02365|lncRNA|chr4:184624738:184625030:-	0	-
#Deleted in new
chr4	184710325	184710406	ENSG00000151725.11|CENPU|pc|chr4:184710325:184710406:-	0	-
#Deleted in new
chr4	184713868	184713941	ENSG00000151725.11|CENPU|pc|chr4:184713868:184713941:-	0	-
#Deleted in new
chr4	184733297	184733414	ENSG00000151725.11|CENPU|pc|chr4:184733297:184733414:-	0	-
#Deleted in new
chr4	184734015	184734130	ENSG00000151725.11|CENPU|pc|chr4:184734015:184734130:-	0	-
#Deleted in new
chr4	184734015	184734133	ENSG00000151725.11|CENPU|pc|chr4:184734015:184734133:-	0	-
#Partially deleted in new
chr4	184813618	184813908	ENSG00000251139.2|AC084871.1|lncRNA|chr4:184813618:184813908:+	0	+
#Partially deleted in new
chr4	184821043	184821300	ENSG00000251139.2|AC084871.1|lncRNA|chr4:184821043:184821300:+	0	+
#Deleted in new
chr4	184826524	184826818	ENSG00000151726.13|ACSL1|pc|chr4:184826524:184826818:-	0	-
#Deleted in new
chr4	184844584	184844925	ENSG00000251230.5|MIR3945HG|lncRNA|chr4:184844584:184844925:-	0	-
#Partially deleted in new
chr4	184846277	184846534	ENSG00000251230.5|MIR3945HG|lncRNA|chr4:184846277:184846534:-	0	-
#Deleted in new
chr4	18488061	18488373	ENSG00000251048.1|AC093871.1|lncRNA|chr4:18488061:18488373:-	0	-
#Deleted in new
chr4	18489286	18489508	ENSG00000251048.1|AC093871.1|lncRNA|chr4:18489286:18489508:-	0	-
#Deleted in new
chr4	184893870	184894140	ENSG00000249173.5|LINC01093|lncRNA|chr4:184893870:184894140:-	0	-
#Deleted in new
chr4	184893900	184894140	ENSG00000249173.5|LINC01093|lncRNA|chr4:184893900:184894140:-	0	-
#Deleted in new
chr4	184893904	184894140	ENSG00000249173.5|LINC01093|lncRNA|chr4:184893904:184894140:-	0	-
#Deleted in new
chr4	184897334	184897567	ENSG00000249173.5|LINC01093|lncRNA|chr4:184897334:184897567:-	0	-
#Deleted in new
chr4	184897347	184897567	ENSG00000249173.5|LINC01093|lncRNA|chr4:184897347:184897567:-	0	-
#Deleted in new
chr4	184898620	184898764	ENSG00000249173.5|LINC01093|lncRNA|chr4:184898620:184898764:-	0	-
#Deleted in new
chr4	185051895	185051936	ENSG00000250754.5|LINC02436|lncRNA|chr4:185051895:185051936:+	0	+
#Partially deleted in new
chr4	185062456	185062816	ENSG00000250754.5|LINC02436|lncRNA|chr4:185062456:185062816:+	0	+
#Deleted in new
chr4	185063247	185063334	ENSG00000250754.5|LINC02436|lncRNA|chr4:185063247:185063334:+	0	+
#Deleted in new
chr4	185064445	185064564	ENSG00000250754.5|LINC02436|lncRNA|chr4:185064445:185064564:+	0	+
#Partially deleted in new
chr4	185069929	185070049	ENSG00000250754.5|LINC02436|lncRNA|chr4:185069929:185070049:+	0	+
#Deleted in new
chr4	185069960	185070030	ENSG00000250754.5|LINC02436|lncRNA|chr4:185069960:185070030:+	0	+
#Deleted in new
chr4	185087544	185087698	ENSG00000250754.5|LINC02436|lncRNA|chr4:185087544:185087698:+	0	+
#Deleted in new
chr4	185096481	185096621	ENSG00000250754.5|LINC02436|lncRNA|chr4:185096481:185096621:+	0	+
#Deleted in new
chr4	185106906	185107248	ENSG00000250754.5|LINC02436|lncRNA|chr4:185106906:185107248:+	0	+
#Deleted in new
chr4	185169025	185170340	ENSG00000164323.12|CFAP97|pc|chr4:185169025:185170340:-	0	-
#Deleted in new
chr4	185207734	185207791	ENSG00000164323.12|CFAP97|pc|chr4:185207734:185207791:-	0	-
#Deleted in new
chr4	185295826	185296030	ENSG00000109762.15|SNX25|pc|chr4:185295826:185296030:+	0	+
#Deleted in new
chr4	185369749	185370185	ENSG00000109762.15|SNX25|pc|chr4:185369749:185370185:+	0	+
#Deleted in new
chr4	185390583	185390928	ENSG00000250410.1|AC112722.1|lncRNA|chr4:185390583:185390928:+	0	+
#Deleted in new
chr4	185394778	185395899	ENSG00000109771.15|LRP2BP|pc|chr4:185394778:185395899:-	0	-
#Partially deleted in new
chr4	185396020	185396424	ENSG00000186352.8|ANKRD37|pc|chr4:185396020:185396424:+	0	+
#Partially deleted in new
chr4	185396044	185396424	ENSG00000186352.8|ANKRD37|pc|chr4:185396044:185396424:+	0	+
#Deleted in new
chr4	185402261	185402344	ENSG00000109775.10|UFSP2|pc|chr4:185402261:185402344:-	0	-
#Partially deleted in new
chr4	185445181	185445542	ENSG00000168491.9|CCDC110|pc|chr4:185445181:185445542:-	0	-
#Deleted in new
chr4	185470579	185470716	ENSG00000168491.9|CCDC110|pc|chr4:185470579:185470716:-	0	-
#Deleted in new
chr4	185471515	185471760	ENSG00000249679.1|AC106897.1|lncRNA|chr4:185471515:185471760:+	0	+
#Deleted in new
chr4	185471673	185471694	ENSG00000168491.9|CCDC110|pc|chr4:185471673:185471694:-	0	-
#Deleted in new
chr4	185471673	185471699	ENSG00000168491.9|CCDC110|pc|chr4:185471673:185471699:-	0	-
#Deleted in new
chr4	185471673	185471702	ENSG00000168491.9|CCDC110|pc|chr4:185471673:185471702:-	0	-
#Deleted in new
chr4	185471673	185471744	ENSG00000168491.9|CCDC110|pc|chr4:185471673:185471744:-	0	-
#Deleted in new
chr4	185471673	185471752	ENSG00000168491.9|CCDC110|pc|chr4:185471673:185471752:-	0	-
#Deleted in new
chr4	185471673	185471759	ENSG00000168491.9|CCDC110|pc|chr4:185471673:185471759:-	0	-
#Deleted in new
chr4	185472114	185472263	ENSG00000249679.1|AC106897.1|lncRNA|chr4:185472114:185472263:+	0	+
#Deleted in new
chr4	185761473	185761590	ENSG00000154556.17|SORBS2|pc|chr4:185761473:185761590:-	0	-
#Deleted in new
chr4	186081616	186081828	ENSG00000164342.12|TLR3|pc|chr4:186081616:186081828:+	0	+
#Deleted in new
chr4	186081618	186081848	ENSG00000164342.12|TLR3|pc|chr4:186081618:186081848:+	0	+
#Partially deleted in new
chr4	186107463	186107735	ENSG00000109794.13|FAM149A|pc|chr4:186107463:186107735:+	0	+
#Deleted in new
chr4	186144060	186144272	ENSG00000109794.13|FAM149A|pc|chr4:186144060:186144272:+	0	+
#Deleted in new
chr4	186144065	186144272	ENSG00000109794.13|FAM149A|pc|chr4:186144065:186144272:+	0	+
#Deleted in new
chr4	186144252	186144332	ENSG00000109794.13|FAM149A|pc|chr4:186144252:186144332:+	0	+
#Deleted in new
chr4	186204380	186204457	ENSG00000145476.15|CYP4V2|pc|chr4:186204380:186204457:+	0	+
#Partially deleted in new
chr4	186204836	186205058	ENSG00000145476.15|CYP4V2|pc|chr4:186204836:186205058:+	0	+
#Deleted in new
chr4	186226437	186226489	ENSG00000164344.15|KLKB1|pc|chr4:186226437:186226489:+	0	+
#Partially deleted in new
chr4	186290755	186291032	ENSG00000251165.5|F11-AS1|lncRNA|chr4:186290755:186291032:-	0	-
#Deleted in new
chr4	186428704	186428850	ENSG00000251165.5|F11-AS1|lncRNA|chr4:186428704:186428850:-	0	-
#Deleted in new
chr4	186431617	186431768	ENSG00000251165.5|F11-AS1|lncRNA|chr4:186431617:186431768:-	0	-
#Deleted in new
chr4	186432144	186432238	ENSG00000251165.5|F11-AS1|lncRNA|chr4:186432144:186432238:-	0	-
#Deleted in new
chr4	186500844	186500997	ENSG00000251165.5|F11-AS1|lncRNA|chr4:186500844:186500997:-	0	-
#Deleted in new
chr4	186598526	186598821	ENSG00000083857.13|FAT1|pc|chr4:186598526:186598821:-	0	-
#Deleted in new
chr4	186890968	186891368	ENSG00000250829.2|AC108865.1|lncRNA|chr4:186890968:186891368:+	0	+
#Deleted in new
chr4	186892270	186892366	ENSG00000250829.2|AC108865.1|lncRNA|chr4:186892270:186892366:+	0	+
#Deleted in new
chr4	186996255	186996438	ENSG00000249742.1|AC110772.1|lncRNA|chr4:186996255:186996438:-	0	-
#Deleted in new
chr4	187201985	187202142	ENSG00000249747.1|LINC02374|lncRNA|chr4:187201985:187202142:+	0	+
#Deleted in new
chr4	187202032	187202142	ENSG00000249747.1|LINC02374|lncRNA|chr4:187202032:187202142:+	0	+
#Deleted in new
chr4	187202981	187203614	ENSG00000249747.1|LINC02374|lncRNA|chr4:187202981:187203614:+	0	+
#Deleted in new
chr4	187209186	187209346	ENSG00000249747.1|LINC02374|lncRNA|chr4:187209186:187209346:+	0	+
#Deleted in new
chr4	187307105	187307269	ENSG00000250658.1|AC097652.1|lncRNA|chr4:187307105:187307269:-	0	-
#Deleted in new
chr4	187555775	187555904	ENSG00000250590.5|LINC02492|lncRNA|chr4:187555775:187555904:-	0	-
#Deleted in new
chr4	187555775	187555949	ENSG00000250590.5|LINC02492|lncRNA|chr4:187555775:187555949:-	0	-
#Deleted in new
chr4	187555910	187555958	ENSG00000250590.5|LINC02492|lncRNA|chr4:187555910:187555958:-	0	-
#Partially deleted in new
chr4	187557746	187557920	ENSG00000250590.5|LINC02492|lncRNA|chr4:187557746:187557920:-	0	-
#Deleted in new
chr4	187592883	187592927	ENSG00000250590.5|LINC02492|lncRNA|chr4:187592883:187592927:-	0	-
#Deleted in new
chr4	187613764	187613999	ENSG00000249642.1|AC097521.1|lncRNA|chr4:187613764:187613999:+	0	+
#Deleted in new
chr4	187622641	187622740	ENSG00000249642.1|AC097521.1|lncRNA|chr4:187622641:187622740:+	0	+
#Deleted in new
chr4	187665761	187665838	ENSG00000250590.5|LINC02492|lncRNA|chr4:187665761:187665838:-	0	-
#Deleted in new
chr4	187672561	187672641	ENSG00000250590.5|LINC02492|lncRNA|chr4:187672561:187672641:-	0	-
#Deleted in new
chr4	187999107	187999273	ENSG00000179059.9|ZFP42|pc|chr4:187999107:187999273:+	0	+
#Deleted in new
chr4	188092786	188093022	ENSG00000179046.8|TRIML2|pc|chr4:188092786:188093022:-	0	-
#Deleted in new
chr4	188098204	188098279	ENSG00000179046.8|TRIML2|pc|chr4:188098204:188098279:-	0	-
#Deleted in new
chr4	188105706	188106039	ENSG00000179046.8|TRIML2|pc|chr4:188105706:188106039:-	0	-
#Deleted in new
chr4	188109242	188109603	ENSG00000179046.8|TRIML2|pc|chr4:188109242:188109603:-	0	-
#Partially deleted in new
chr4	188142927	188143379	ENSG00000247130.2|AC138781.1|lncRNA|chr4:188142927:188143379:-	0	-
#Deleted in new
chr4	188160064	188160102	ENSG00000248370.1|LINC02434|lncRNA|chr4:188160064:188160102:+	0	+
#Deleted in new
chr4	188400735	188400833	ENSG00000249378.5|LINC01060|lncRNA|chr4:188400735:188400833:+	0	+
#Deleted in new
chr4	188436703	188436900	ENSG00000249378.5|LINC01060|lncRNA|chr4:188436703:188436900:+	0	+
#Deleted in new
chr4	188455577	188455674	ENSG00000249378.5|LINC01060|lncRNA|chr4:188455577:188455674:+	0	+
#Deleted in new
chr4	188455592	188455674	ENSG00000249378.5|LINC01060|lncRNA|chr4:188455592:188455674:+	0	+
#Deleted in new
chr4	188455624	188455674	ENSG00000249378.5|LINC01060|lncRNA|chr4:188455624:188455674:+	0	+
#Deleted in new
chr4	188456663	188456762	ENSG00000249378.5|LINC01060|lncRNA|chr4:188456663:188456762:+	0	+
#Deleted in new
chr4	188601767	188601906	ENSG00000249378.5|LINC01060|lncRNA|chr4:188601767:188601906:+	0	+
#Deleted in new
chr4	188601767	188601908	ENSG00000249378.5|LINC01060|lncRNA|chr4:188601767:188601908:+	0	+
#Deleted in new
chr4	188740506	188741281	ENSG00000278974.1|AC093909.6|lncRNA|chr4:188740506:188741281:-	0	-
#Deleted in new
chr4	1887500	1887690	ENSG00000109685.17|NSD2|pc|chr4:1887500:1887690:+	0	+
#Deleted in new
chr4	188757678	188757744	ENSG00000249269.1|AC093909.2|lncRNA|chr4:188757678:188757744:+	0	+
#Deleted in new
chr4	188768790	188768865	ENSG00000249269.1|AC093909.2|lncRNA|chr4:188768790:188768865:+	0	+
#Deleted in new
chr4	188776656	188776767	ENSG00000251619.1|LINC02508|lncRNA|chr4:188776656:188776767:+	0	+
#Deleted in new
chr4	188777678	188778051	ENSG00000250626.2|AC093909.4|lncRNA|chr4:188777678:188778051:-	0	-
#Deleted in new
chr4	188778683	188778979	ENSG00000249269.1|AC093909.2|lncRNA|chr4:188778683:188778979:+	0	+
#Partially deleted in new
chr4	188795235	188796633	ENSG00000250626.2|AC093909.4|lncRNA|chr4:188795235:188796633:-	0	-
#Deleted in new
chr4	189001769	189002075	ENSG00000250024.1|AC122138.1|lncRNA|chr4:189001769:189002075:-	0	-
#Partially deleted in new
chr4	189193099	189193276	ENSG00000251310.1|AC107391.1|lncRNA|chr4:189193099:189193276:+	0	+
#Partially deleted in new
chr4	189204642	189204877	ENSG00000251310.1|AC107391.1|lncRNA|chr4:189204642:189204877:+	0	+
#Deleted in new
chr4	1892165	1892263	ENSG00000109685.17|NSD2|pc|chr4:1892165:1892263:+	0	+
#Deleted in new
chr4	1892781	1892891	ENSG00000109685.17|NSD2|pc|chr4:1892781:1892891:+	0	+
#Deleted in new
chr4	1892844	1892891	ENSG00000109685.17|NSD2|pc|chr4:1892844:1892891:+	0	+
#Deleted in new
chr4	189288676	189288857	ENSG00000249877.1|AC105924.1|lncRNA|chr4:189288676:189288857:-	0	-
#Deleted in new
chr4	189291178	189291336	ENSG00000249877.1|AC105924.1|lncRNA|chr4:189291178:189291336:-	0	-
#Deleted in new
chr4	1893729	1893909	ENSG00000109685.17|NSD2|pc|chr4:1893729:1893909:+	0	+
#Deleted in new
chr4	189659604	189659729	ENSG00000250739.1|LINC01262|lncRNA|chr4:189659604:189659729:+	0	+
#Deleted in new
chr4	189703880	189704490	ENSG00000272566.1|AF250324.2|lncRNA|chr4:189703880:189704490:-	0	-
#Deleted in new
chr4	1899217	1899395	ENSG00000109685.17|NSD2|pc|chr4:1899217:1899395:+	0	+
#Deleted in new
chr4	1899220	1899395	ENSG00000109685.17|NSD2|pc|chr4:1899220:1899395:+	0	+
#Deleted in new
chr4	189937196	189937333	ENSG00000245685.6|AF250324.1|lncRNA|chr4:189937196:189937333:-	0	-
#Deleted in new
chr4	189939658	189939741	ENSG00000245685.6|AF250324.1|lncRNA|chr4:189939658:189939741:-	0	-
#Deleted in new
chr4	189939658	189939837	ENSG00000245685.6|AF250324.1|lncRNA|chr4:189939658:189939837:-	0	-
#Deleted in new
chr4	189940169	189940271	ENSG00000245685.6|AF250324.1|lncRNA|chr4:189940169:189940271:-	0	-
#Partially deleted in new
chr4	189941832	189942004	ENSG00000109536.11|FRG1|pc|chr4:189941832:189942004:+	0	+
#Deleted in new
chr4	189941908	189942000	ENSG00000109536.11|FRG1|pc|chr4:189941908:189942000:+	0	+
#Deleted in new
chr4	189941908	189942004	ENSG00000109536.11|FRG1|pc|chr4:189941908:189942004:+	0	+
#Deleted in new
chr4	189961428	189961550	ENSG00000109536.11|FRG1|pc|chr4:189961428:189961550:+	0	+
#Deleted in new
chr4	190027026	190027254	ENSG00000205097.6|FRG2|pc|chr4:190027026:190027254:-	0	-
#Deleted in new
chr4	190027026	190027257	ENSG00000205097.6|FRG2|pc|chr4:190027026:190027257:-	0	-
#Deleted in new
chr4	190064501	190067864	ENSG00000281591.1|DBET|lncRNA|chr4:190064501:190067864:+	0	+
#Split in new
chr4	190173773	190175284	ENSG00000260596.5|DUX4|pc|chr4:190173773:190175284:+	0	+
#Deleted in new
chr4	190175192	190175284	ENSG00000260596.5|DUX4|pc|chr4:190175192:190175284:+	0	+
#Deleted in new
chr4	190175646	190175845	ENSG00000260596.5|DUX4|pc|chr4:190175646:190175845:+	0	+
#Deleted in new
chr4	190182116	190182181	ENSG00000260596.5|DUX4|pc|chr4:190182116:190182181:+	0	+
#Deleted in new
chr4	190183235	190183303	ENSG00000260596.5|DUX4|pc|chr4:190183235:190183303:+	0	+
#Deleted in new
chr4	190185340	190185439	ENSG00000260596.5|DUX4|pc|chr4:190185340:190185439:+	0	+
#Deleted in new
chr4	190185848	190185911	ENSG00000260596.5|DUX4|pc|chr4:190185848:190185911:+	0	+
#Deleted in new
chr4	190185848	190185942	ENSG00000260596.5|DUX4|pc|chr4:190185848:190185942:+	0	+
#Deleted in new
chr4	1912090	1912152	ENSG00000109685.17|NSD2|pc|chr4:1912090:1912152:+	0	+
#Deleted in new
chr4	1912090	1912194	ENSG00000109685.17|NSD2|pc|chr4:1912090:1912194:+	0	+
#Partially deleted in new
chr4	19172334	19172526	ENSG00000248238.1|LINC02438|lncRNA|chr4:19172334:19172526:-	0	-
#Deleted in new
chr4	19257950	19258337	ENSG00000279379.1|AC024595.1|lncRNA|chr4:19257950:19258337:-	0	-
#Deleted in new
chr4	19455435	19455652	ENSG00000248515.1|AC024230.1|lncRNA|chr4:19455435:19455652:+	0	+
#Partially deleted in new
chr4	19456645	19456994	ENSG00000248238.1|LINC02438|lncRNA|chr4:19456645:19456994:-	0	-
#Deleted in new
chr4	1954536	1954685	ENSG00000109685.17|NSD2|pc|chr4:1954536:1954685:+	0	+
#Deleted in new
chr4	19747178	19747318	ENSG00000249441.1|AC110767.1|lncRNA|chr4:19747178:19747318:-	0	-
#Deleted in new
chr4	19856275	19856395	ENSG00000248515.1|AC024230.1|lncRNA|chr4:19856275:19856395:+	0	+
#Partially deleted in new
chr4	1987500	1988007	ENSG00000185049.14|NELFA|pc|chr4:1987500:1988007:-	0	-
#Deleted in new
chr4	1990417	1990501	ENSG00000185049.14|NELFA|pc|chr4:1990417:1990501:-	0	-
#Deleted in new
chr4	19909211	19909692	ENSG00000248515.1|AC024230.1|lncRNA|chr4:19909211:19909692:+	0	+
#Partially deleted in new
chr4	1991543	1992244	ENSG00000185049.14|NELFA|pc|chr4:1991543:1992244:-	0	-
#Deleted in new
chr4	1992402	1992624	ENSG00000185049.14|NELFA|pc|chr4:1992402:1992624:-	0	-
#Deleted in new
chr4	2003837	2004150	ENSG00000185049.14|NELFA|pc|chr4:2003837:2004150:-	0	-
#Deleted in new
chr4	2006997	2007199	ENSG00000185049.14|NELFA|pc|chr4:2006997:2007199:-	0	-
#Deleted in new
chr4	2007962	2008046	ENSG00000185049.14|NELFA|pc|chr4:2007962:2008046:-	0	-
#Deleted in new
chr4	2007971	2008046	ENSG00000185049.14|NELFA|pc|chr4:2007971:2008046:-	0	-
#Deleted in new
chr4	2017664	2017742	ENSG00000185049.14|NELFA|pc|chr4:2017664:2017742:-	0	-
#Deleted in new
chr4	2023404	2023536	ENSG00000185049.14|NELFA|pc|chr4:2023404:2023536:-	0	-
#Deleted in new
chr4	20392188	20392263	ENSG00000248228.1|SLIT2-IT1|lncRNA|chr4:20392188:20392263:+	0	+
#Deleted in new
chr4	2041715	2041903	ENSG00000185049.14|NELFA|pc|chr4:2041715:2041903:-	0	-
#Deleted in new
chr4	20489942	20489954	ENSG00000145147.19|SLIT2|pc|chr4:20489942:20489954:+	0	+
#Deleted in new
chr4	20696281	20696513	ENSG00000163138.18|PACRGL|pc|chr4:20696281:20696513:+	0	+
#Deleted in new
chr4	20701725	20701884	ENSG00000163138.18|PACRGL|pc|chr4:20701725:20701884:+	0	+
#Deleted in new
chr4	20701757	20701854	ENSG00000163138.18|PACRGL|pc|chr4:20701757:20701854:+	0	+
#Deleted in new
chr4	20701757	20701884	ENSG00000163138.18|PACRGL|pc|chr4:20701757:20701884:+	0	+
#Deleted in new
chr4	20702140	20702196	ENSG00000163138.18|PACRGL|pc|chr4:20702140:20702196:+	0	+
#Deleted in new
chr4	20702140	20702221	ENSG00000163138.18|PACRGL|pc|chr4:20702140:20702221:+	0	+
#Deleted in new
chr4	20702650	20702740	ENSG00000163138.18|PACRGL|pc|chr4:20702650:20702740:+	0	+
#Deleted in new
chr4	20702674	20702694	ENSG00000163138.18|PACRGL|pc|chr4:20702674:20702694:+	0	+
#Deleted in new
chr4	20716106	20716248	ENSG00000163138.18|PACRGL|pc|chr4:20716106:20716248:+	0	+
#Deleted in new
chr4	20718815	20718976	ENSG00000163138.18|PACRGL|pc|chr4:20718815:20718976:+	0	+
#Deleted in new
chr4	20752564	20752861	ENSG00000163138.18|PACRGL|pc|chr4:20752564:20752861:+	0	+
#Deleted in new
chr4	20752564	20752888	ENSG00000163138.18|PACRGL|pc|chr4:20752564:20752888:+	0	+
#Deleted in new
chr4	20752564	20752900	ENSG00000163138.18|PACRGL|pc|chr4:20752564:20752900:+	0	+
#Deleted in new
chr4	20752564	20752907	ENSG00000163138.18|PACRGL|pc|chr4:20752564:20752907:+	0	+
#Partially deleted in new
chr4	20766807	20767372	ENSG00000272995.1|AC097505.1|lncRNA|chr4:20766807:20767372:+	0	+
#Partially deleted in new
chr4	2078484	2078918	ENSG00000130997.16|POLN|pc|chr4:2078484:2078918:-	0	-
#Split in new
chr4	2078491	2081154	ENSG00000130997.16|POLN|pc|chr4:2078491:2081154:-	0	-
#Deleted in new
chr4	2082680	2083010	ENSG00000130997.16|POLN|pc|chr4:2082680:2083010:-	0	-
#Deleted in new
chr4	21315275	21315340	ENSG00000250243.2|AC110296.1|lncRNA|chr4:21315275:21315340:+	0	+
#Deleted in new
chr4	2139672	2140021	ENSG00000250623.1|AL136360.2|lncRNA|chr4:2139672:2140021:+	0	+
#Deleted in new
chr4	2140826	2141058	ENSG00000250623.1|AL136360.2|lncRNA|chr4:2140826:2141058:+	0	+
#Deleted in new
chr4	21544389	21544656	ENSG00000185774.14|KCNIP4|pc|chr4:21544389:21544656:-	0	-
#Deleted in new
chr4	2156393	2156500	ENSG00000130997.16|POLN|pc|chr4:2156393:2156500:-	0	-
#Deleted in new
chr4	21582095	21582125	ENSG00000250092.2|AC096576.3|lncRNA|chr4:21582095:21582125:+	0	+
#Deleted in new
chr4	21582217	21582375	ENSG00000250092.2|AC096576.3|lncRNA|chr4:21582217:21582375:+	0	+
#Partially deleted in new
chr4	21613331	21613728	ENSG00000250092.2|AC096576.3|lncRNA|chr4:21613331:21613728:+	0	+
#Partially deleted in new
chr4	2227463	2228458	ENSG00000214367.7|HAUS3|pc|chr4:2227463:2228458:-	0	-
#Deleted in new
chr4	22346732	22346823	ENSG00000152990.13|ADGRA3|pc|chr4:22346732:22346823:-	0	-
#Partially deleted in new
chr4	22392544	22394868	ENSG00000152990.13|ADGRA3|pc|chr4:22392544:22394868:-	0	-
#Deleted in new
chr4	22473019	22473231	ENSG00000152990.13|ADGRA3|pc|chr4:22473019:22473231:-	0	-
#Deleted in new
chr4	2285342	2286121	ENSG00000159733.13|ZFYVE28|pc|chr4:2285342:2286121:-	0	-
#Deleted in new
chr4	2295583	2295845	ENSG00000251148.1|AL158068.2|lncRNA|chr4:2295583:2295845:+	0	+
#Deleted in new
chr4	22997550	22997613	ENSG00000248837.5|AC097512.1|lncRNA|chr4:22997550:22997613:+	0	+
#Partially deleted in new
chr4	23055838	23056862	ENSG00000248837.5|AC097512.1|lncRNA|chr4:23055838:23056862:+	0	+
#Deleted in new
chr4	2306890	2307098	ENSG00000251148.1|AL158068.2|lncRNA|chr4:2306890:2307098:+	0	+
#Deleted in new
chr4	23105501	23105616	ENSG00000249645.1|AC114912.1|lncRNA|chr4:23105501:23105616:+	0	+
#Deleted in new
chr4	2328533	2329142	ENSG00000159733.13|ZFYVE28|pc|chr4:2328533:2329142:-	0	-
#Deleted in new
chr4	23285436	23285573	ENSG00000249547.1|AC092440.1|lncRNA|chr4:23285436:23285573:-	0	-
#Deleted in new
chr4	2328805	2329142	ENSG00000159733.13|ZFYVE28|pc|chr4:2328805:2329142:-	0	-
#Deleted in new
chr4	2342580	2343203	ENSG00000159733.13|ZFYVE28|pc|chr4:2342580:2343203:-	0	-
#Deleted in new
chr4	2343308	2343524	ENSG00000159733.13|ZFYVE28|pc|chr4:2343308:2343524:-	0	-
#Deleted in new
chr4	2364485	2364804	ENSG00000159733.13|ZFYVE28|pc|chr4:2364485:2364804:-	0	-
#Deleted in new
chr4	2364485	2364877	ENSG00000159733.13|ZFYVE28|pc|chr4:2364485:2364877:-	0	-
#Deleted in new
chr4	2364692	2364827	ENSG00000159733.13|ZFYVE28|pc|chr4:2364692:2364827:-	0	-
#Deleted in new
chr4	23723261	23723470	ENSG00000251292.1|ERVH-1|lncRNA|chr4:23723261:23723470:-	0	-
#Deleted in new
chr4	23727270	23727431	ENSG00000251292.1|ERVH-1|lncRNA|chr4:23727270:23727431:-	0	-
#Deleted in new
chr4	23727720	23727899	ENSG00000251292.1|ERVH-1|lncRNA|chr4:23727720:23727899:-	0	-
#Deleted in new
chr4	23762926	23763178	ENSG00000250137.1|AC093607.1|lncRNA|chr4:23762926:23763178:+	0	+
#Deleted in new
chr4	2406542	2406665	ENSG00000159733.13|ZFYVE28|pc|chr4:2406542:2406665:-	0	-
#Deleted in new
chr4	2426703	2429245	ENSG00000206113.10|CFAP99|pc|chr4:2426703:2429245:+	0	+
#Deleted in new
chr4	24580719	24580942	ENSG00000109606.12|DHX15|pc|chr4:24580719:24580942:-	0	-
#Partially deleted in new
chr4	24669561	24671568	ENSG00000261121.1|LINC02473|lncRNA|chr4:24669561:24671568:+	0	+
#Deleted in new
chr4	2470986	2471109	ENSG00000063978.15|RNF4|pc|chr4:2470986:2471109:+	0	+
#Deleted in new
chr4	24789911	24789968	ENSG00000109610.5|SOD3|pc|chr4:24789911:24789968:+	0	+
#Deleted in new
chr4	24789946	24789968	ENSG00000109610.5|SOD3|pc|chr4:24789946:24789968:+	0	+
#Deleted in new
chr4	24790061	24790102	ENSG00000109610.5|SOD3|pc|chr4:24790061:24790102:+	0	+
#Deleted in new
chr4	24790061	24790606	ENSG00000109610.5|SOD3|pc|chr4:24790061:24790606:+	0	+
#Deleted in new
chr4	2479852	2481210	ENSG00000063978.15|RNF4|pc|chr4:2479852:2481210:+	0	+
#Partially deleted in new
chr4	24826939	24831650	ENSG00000181982.18|CCDC149|pc|chr4:24826939:24831650:-	0	-
#Deleted in new
chr4	24894991	24895118	ENSG00000181982.18|CCDC149|pc|chr4:24894991:24895118:-	0	-
#Deleted in new
chr4	2489810	2489905	ENSG00000063978.15|RNF4|pc|chr4:2489810:2489905:+	0	+
#Deleted in new
chr4	2494563	2494752	ENSG00000063978.15|RNF4|pc|chr4:2494563:2494752:+	0	+
#Deleted in new
chr4	2494566	2494752	ENSG00000063978.15|RNF4|pc|chr4:2494566:2494752:+	0	+
#Deleted in new
chr4	2499336	2499419	ENSG00000063978.15|RNF4|pc|chr4:2499336:2499419:+	0	+
#Partially deleted in new
chr4	25125300	25125784	ENSG00000109618.11|SEPSECS|pc|chr4:25125300:25125784:-	0	-
#Deleted in new
chr4	25159509	25159764	ENSG00000109618.11|SEPSECS|pc|chr4:25159509:25159764:-	0	-
#Deleted in new
chr4	25159627	25159764	ENSG00000109618.11|SEPSECS|pc|chr4:25159627:25159764:-	0	-
#Deleted in new
chr4	25161417	25161687	ENSG00000281501.1|AC104662.3|lncRNA|chr4:25161417:25161687:+	0	+
#Partially deleted in new
chr4	25197467	25201440	ENSG00000281501.1|AC104662.3|lncRNA|chr4:25197467:25201440:+	0	+
#Deleted in new
chr4	25220402	25220913	ENSG00000271172.1|AC104662.1|lncRNA|chr4:25220402:25220913:+	0	+
#Partially deleted in new
chr4	26070753	26072020	ENSG00000283314.1|LINC02357|lncRNA|chr4:26070753:26072020:+	0	+
#Deleted in new
chr4	26080449	26080590	ENSG00000283314.1|LINC02357|lncRNA|chr4:26080449:26080590:+	0	+
#Deleted in new
chr4	26359690	26359775	ENSG00000168214.20|RBPJ|pc|chr4:26359690:26359775:+	0	+
#Partially deleted in new
chr4	26367873	26368145	ENSG00000168214.20|RBPJ|pc|chr4:26367873:26368145:+	0	+
#Deleted in new
chr4	26383884	26383960	ENSG00000168214.20|RBPJ|pc|chr4:26383884:26383960:+	0	+
#Deleted in new
chr4	26384528	26384608	ENSG00000168214.20|RBPJ|pc|chr4:26384528:26384608:+	0	+
#Deleted in new
chr4	2654420	2655129	ENSG00000125386.15|FAM193A|pc|chr4:2654420:2655129:+	0	+
#Deleted in new
chr4	2655057	2655129	ENSG00000125386.15|FAM193A|pc|chr4:2655057:2655129:+	0	+
#Deleted in new
chr4	26662863	26663073	ENSG00000109680.10|TBC1D19|pc|chr4:26662863:26663073:+	0	+
#Deleted in new
chr4	27021000	27021068	ENSG00000109689.15|STIM2|pc|chr4:27021000:27021068:+	0	+
#Deleted in new
chr4	27021281	27021612	ENSG00000109689.15|STIM2|pc|chr4:27021281:27021612:+	0	+
#Deleted in new
chr4	27021493	27021612	ENSG00000109689.15|STIM2|pc|chr4:27021493:27021612:+	0	+
#Deleted in new
chr4	2708145	2708268	ENSG00000125386.15|FAM193A|pc|chr4:2708145:2708268:+	0	+
#Deleted in new
chr4	27133995	27134230	ENSG00000251080.1|AC024132.2|lncRNA|chr4:27133995:27134230:-	0	-
#Deleted in new
chr4	2715321	2715493	ENSG00000125386.15|FAM193A|pc|chr4:2715321:2715493:+	0	+
#Deleted in new
chr4	2719979	2720034	ENSG00000125386.15|FAM193A|pc|chr4:2719979:2720034:+	0	+
#Deleted in new
chr4	2719979	2720072	ENSG00000125386.15|FAM193A|pc|chr4:2719979:2720072:+	0	+
#Partially deleted in new
chr4	27207504	27209750	ENSG00000205830.1|AC024132.1|lncRNA|chr4:27207504:27209750:-	0	-
#Deleted in new
chr4	27227380	27227497	ENSG00000249699.1|LINC02261|lncRNA|chr4:27227380:27227497:+	0	+
#Deleted in new
chr4	27231363	27231521	ENSG00000249699.1|LINC02261|lncRNA|chr4:27231363:27231521:+	0	+
#Partially deleted in new
chr4	27262505	27263123	ENSG00000251325.1|AC024132.3|lncRNA|chr4:27262505:27263123:-	0	-
#Partially deleted in new
chr4	27280269	27282225	ENSG00000249699.1|LINC02261|lncRNA|chr4:27280269:27282225:+	0	+
#Deleted in new
chr4	2793022	2793138	ENSG00000087266.15|SH3BP2|pc|chr4:2793022:2793138:+	0	+
#Deleted in new
chr4	2793070	2793138	ENSG00000087266.15|SH3BP2|pc|chr4:2793070:2793138:+	0	+
#Deleted in new
chr4	2793071	2793138	ENSG00000087266.15|SH3BP2|pc|chr4:2793071:2793138:+	0	+
#Deleted in new
chr4	27967722	27967927	ENSG00000251410.1|AC007106.1|lncRNA|chr4:27967722:27967927:-	0	-
#Partially deleted in new
chr4	2818715	2819070	ENSG00000087266.15|SH3BP2|pc|chr4:2818715:2819070:+	0	+
#Deleted in new
chr4	2818813	2819070	ENSG00000087266.15|SH3BP2|pc|chr4:2818813:2819070:+	0	+
#Duplicated in new
chr4	2826695	2827318	ENSG00000087266.15|SH3BP2|pc|chr4:2826695:2827318:+	0	+
#Duplicated in new
chr4	2826849	2827318	ENSG00000087266.15|SH3BP2|pc|chr4:2826849:2827318:+	0	+
#Deleted in new
chr4	28370699	28370809	ENSG00000250038.5|AC109588.1|lncRNA|chr4:28370699:28370809:-	0	-
#Deleted in new
chr4	28393203	28393350	ENSG00000250038.5|AC109588.1|lncRNA|chr4:28393203:28393350:-	0	-
#Deleted in new
chr4	28394195	28394300	ENSG00000250038.5|AC109588.1|lncRNA|chr4:28394195:28394300:-	0	-
#Deleted in new
chr4	28402651	28402701	ENSG00000250038.5|AC109588.1|lncRNA|chr4:28402651:28402701:-	0	-
#Deleted in new
chr4	28402651	28402864	ENSG00000250038.5|AC109588.1|lncRNA|chr4:28402651:28402864:-	0	-
#Deleted in new
chr4	28435448	28435790	ENSG00000250064.1|AC097480.1|lncRNA|chr4:28435448:28435790:+	0	+
#Deleted in new
chr4	28476449	28476509	ENSG00000250064.1|AC097480.1|lncRNA|chr4:28476449:28476509:+	0	+
#Deleted in new
chr4	2853133	2853203	ENSG00000087274.16|ADD1|pc|chr4:2853133:2853203:+	0	+
#Deleted in new
chr4	2853623	2853698	ENSG00000087274.16|ADD1|pc|chr4:2853623:2853698:+	0	+
#Deleted in new
chr4	2854853	2854950	ENSG00000087274.16|ADD1|pc|chr4:2854853:2854950:+	0	+
#Deleted in new
chr4	2854853	2855029	ENSG00000087274.16|ADD1|pc|chr4:2854853:2855029:+	0	+
#Deleted in new
chr4	28600046	28600275	ENSG00000250064.1|AC097480.1|lncRNA|chr4:28600046:28600275:+	0	+
#Partially deleted in new
chr4	2898183	2902914	ENSG00000087274.16|ADD1|pc|chr4:2898183:2902914:+	0	+
#Deleted in new
chr4	28996523	28996871	ENSG00000250190.1|LINC02364|lncRNA|chr4:28996523:28996871:+	0	+
#Deleted in new
chr4	29046590	29046686	ENSG00000249228.1|AC068944.1|lncRNA|chr4:29046590:29046686:+	0	+
#Deleted in new
chr4	29047257	29048765	ENSG00000249228.1|AC068944.1|lncRNA|chr4:29047257:29048765:+	0	+
#Deleted in new
chr4	29118307	29118644	ENSG00000248176.1|AC109349.1|lncRNA|chr4:29118307:29118644:+	0	+
#Deleted in new
chr4	29118731	29118862	ENSG00000248176.1|AC109349.1|lncRNA|chr4:29118731:29118862:+	0	+
#Deleted in new
chr4	29202480	29202770	ENSG00000248176.1|AC109349.1|lncRNA|chr4:29202480:29202770:+	0	+
#Deleted in new
chr4	29214397	29214454	ENSG00000248338.1|LINC02472|lncRNA|chr4:29214397:29214454:+	0	+
#Deleted in new
chr4	29215287	29215486	ENSG00000248338.1|LINC02472|lncRNA|chr4:29215287:29215486:+	0	+
#Partially deleted in new
chr4	2933752	2934458	ENSG00000109736.14|MFSD10|pc|chr4:2933752:2934458:-	0	-
#Deleted in new
chr4	2934768	2934796	ENSG00000109736.14|MFSD10|pc|chr4:2934768:2934796:-	0	-
#Deleted in new
chr4	2934768	2934815	ENSG00000109736.14|MFSD10|pc|chr4:2934768:2934815:-	0	-
#Deleted in new
chr4	2934768	2934816	ENSG00000109736.14|MFSD10|pc|chr4:2934768:2934816:-	0	-
#Deleted in new
chr4	2934768	2934834	ENSG00000109736.14|MFSD10|pc|chr4:2934768:2934834:-	0	-
#Deleted in new
chr4	2934768	2934859	ENSG00000109736.14|MFSD10|pc|chr4:2934768:2934859:-	0	-
#Deleted in new
chr4	2934898	2935735	ENSG00000249673.6|NOP14-AS1|lncRNA|chr4:2934898:2935735:+	0	+
#Deleted in new
chr4	2934939	2935735	ENSG00000249673.6|NOP14-AS1|lncRNA|chr4:2934939:2935735:+	0	+
#Partially deleted in new
chr4	2935545	2936890	ENSG00000249673.6|NOP14-AS1|lncRNA|chr4:2935545:2936890:+	0	+
#Partially deleted in new
chr4	2935545	2938142	ENSG00000249673.6|NOP14-AS1|lncRNA|chr4:2935545:2938142:+	0	+
#Deleted in new
chr4	2937265	2937844	ENSG00000249673.6|NOP14-AS1|lncRNA|chr4:2937265:2937844:+	0	+
#Deleted in new
chr4	2937594	2937844	ENSG00000249673.6|NOP14-AS1|lncRNA|chr4:2937594:2937844:+	0	+
#Deleted in new
chr4	2937650	2937844	ENSG00000249673.6|NOP14-AS1|lncRNA|chr4:2937650:2937844:+	0	+
#Deleted in new
chr4	2937751	2937844	ENSG00000249673.6|NOP14-AS1|lncRNA|chr4:2937751:2937844:+	0	+
#Deleted in new
chr4	2937932	2938327	ENSG00000087269.15|NOP14|pc|chr4:2937932:2938327:-	0	-
#Partially deleted in new
chr4	2937932	2938930	ENSG00000087269.15|NOP14|pc|chr4:2937932:2938930:-	0	-
#Deleted in new
chr4	2937941	2938188	ENSG00000087269.15|NOP14|pc|chr4:2937941:2938188:-	0	-
#Deleted in new
chr4	2937951	2938327	ENSG00000087269.15|NOP14|pc|chr4:2937951:2938327:-	0	-
#Deleted in new
chr4	2937974	2938142	ENSG00000249673.6|NOP14-AS1|lncRNA|chr4:2937974:2938142:+	0	+
#Deleted in new
chr4	2938112	2938327	ENSG00000087269.15|NOP14|pc|chr4:2938112:2938327:-	0	-
#Deleted in new
chr4	2938692	2938792	ENSG00000249673.6|NOP14-AS1|lncRNA|chr4:2938692:2938792:+	0	+
#Deleted in new
chr4	2961353	2961738	ENSG00000249673.6|NOP14-AS1|lncRNA|chr4:2961353:2961738:+	0	+
#Deleted in new
chr4	2965242	2966889	ENSG00000125388.19|GRK4|pc|chr4:2965242:2966889:+	0	+
#Deleted in new
chr4	2969168	2969317	ENSG00000125388.19|GRK4|pc|chr4:2969168:2969317:+	0	+
#Deleted in new
chr4	2970947	2971192	ENSG00000125388.19|GRK4|pc|chr4:2970947:2971192:+	0	+
#Deleted in new
chr4	3063470	3063700	ENSG00000251075.1|HTT-AS|lncRNA|chr4:3063470:3063700:-	0	-
#Deleted in new
chr4	3069977	3070173	ENSG00000251075.1|HTT-AS|lncRNA|chr4:3069977:3070173:-	0	-
#Deleted in new
chr4	3074425	3074514	ENSG00000251075.1|HTT-AS|lncRNA|chr4:3074425:3074514:-	0	-
#Deleted in new
chr4	31171143	31171299	ENSG00000251182.1|LINC02497|lncRNA|chr4:31171143:31171299:+	0	+
#Deleted in new
chr4	31176620	31176706	ENSG00000251182.1|LINC02497|lncRNA|chr4:31176620:31176706:+	0	+
#Deleted in new
chr4	31196353	31196461	ENSG00000251182.1|LINC02497|lncRNA|chr4:31196353:31196461:+	0	+
#Deleted in new
chr4	31350283	31350351	ENSG00000251434.1|AC104071.1|lncRNA|chr4:31350283:31350351:+	0	+
#Deleted in new
chr4	31351191	31351725	ENSG00000251434.1|AC104071.1|lncRNA|chr4:31351191:31351725:+	0	+
#Deleted in new
chr4	31506665	31506825	ENSG00000249882.1|LINC02501|lncRNA|chr4:31506665:31506825:+	0	+
#Deleted in new
chr4	31557498	31557594	ENSG00000249882.1|LINC02501|lncRNA|chr4:31557498:31557594:+	0	+
#Deleted in new
chr4	31558651	31558821	ENSG00000249882.1|LINC02501|lncRNA|chr4:31558651:31558821:+	0	+
#Partially deleted in new
chr4	31997396	31997822	ENSG00000251129.1|LINC02506|lncRNA|chr4:31997396:31997822:+	0	+
#Deleted in new
chr4	3203005	3203066	ENSG00000197386.10|HTT|pc|chr4:3203005:3203066:+	0	+
#Deleted in new
chr4	32146052	32146267	ENSG00000251129.1|LINC02506|lncRNA|chr4:32146052:32146267:+	0	+
#Deleted in new
chr4	32155313	32155406	ENSG00000251129.1|LINC02506|lncRNA|chr4:32155313:32155406:+	0	+
#Deleted in new
chr4	32351037	32351143	ENSG00000251329.1|LINC02353|lncRNA|chr4:32351037:32351143:+	0	+
#Deleted in new
chr4	3261331	3262541	ENSG00000188981.10|MSANTD1|pc|chr4:3261331:3262541:+	0	+
#Deleted in new
chr4	3263884	3264061	ENSG00000188981.10|MSANTD1|pc|chr4:3263884:3264061:+	0	+
#Deleted in new
chr4	3267759	3267895	ENSG00000188981.10|MSANTD1|pc|chr4:3267759:3267895:+	0	+
#Deleted in new
chr4	3314146	3314949	ENSG00000159788.18|RGS12|pc|chr4:3314146:3314949:+	0	+
#Deleted in new
chr4	3342414	3342578	ENSG00000159788.18|RGS12|pc|chr4:3342414:3342578:+	0	+
#Deleted in new
chr4	33433509	33433564	ENSG00000248417.1|AC097535.1|lncRNA|chr4:33433509:33433564:+	0	+
#Deleted in new
chr4	33776346	33776622	ENSG00000250954.5|AC016687.3|lncRNA|chr4:33776346:33776622:-	0	-
#Deleted in new
chr4	3378169	3378591	ENSG00000159788.18|RGS12|pc|chr4:3378169:3378591:+	0	+
#Deleted in new
chr4	3385145	3385424	ENSG00000159788.18|RGS12|pc|chr4:3385145:3385424:+	0	+
#Deleted in new
chr4	3385603	3385651	ENSG00000159788.18|RGS12|pc|chr4:3385603:3385651:+	0	+
#Deleted in new
chr4	3385680	3385816	ENSG00000159788.18|RGS12|pc|chr4:3385680:3385816:+	0	+
#Deleted in new
chr4	3385698	3385793	ENSG00000159788.18|RGS12|pc|chr4:3385698:3385793:+	0	+
#Deleted in new
chr4	33881614	33881754	ENSG00000250723.5|AC016687.2|lncRNA|chr4:33881614:33881754:+	0	+
#Deleted in new
chr4	33881697	33881754	ENSG00000250723.5|AC016687.2|lncRNA|chr4:33881697:33881754:+	0	+
#Deleted in new
chr4	33888949	33889073	ENSG00000250723.5|AC016687.2|lncRNA|chr4:33888949:33889073:+	0	+
#Deleted in new
chr4	33888967	33889073	ENSG00000250723.5|AC016687.2|lncRNA|chr4:33888967:33889073:+	0	+
#Partially deleted in new
chr4	33896338	33898319	ENSG00000250954.5|AC016687.3|lncRNA|chr4:33896338:33898319:-	0	-
#Deleted in new
chr4	33947408	33947524	ENSG00000250954.5|AC016687.3|lncRNA|chr4:33947408:33947524:-	0	-
#Deleted in new
chr4	33970790	33970956	ENSG00000250954.5|AC016687.3|lncRNA|chr4:33970790:33970956:-	0	-
#Partially deleted in new
chr4	33980204	33980286	ENSG00000250954.5|AC016687.3|lncRNA|chr4:33980204:33980286:-	0	-
#Deleted in new
chr4	34039834	34039882	ENSG00000250954.5|AC016687.3|lncRNA|chr4:34039834:34039882:-	0	-
#Deleted in new
chr4	34039834	34039893	ENSG00000250954.5|AC016687.3|lncRNA|chr4:34039834:34039893:-	0	-
#Deleted in new
chr4	34123505	34123724	ENSG00000248685.5|LINC02484|lncRNA|chr4:34123505:34123724:-	0	-
#Deleted in new
chr4	34125800	34125862	ENSG00000248685.5|LINC02484|lncRNA|chr4:34125800:34125862:-	0	-
#Partially deleted in new
chr4	3413228	3413703	ENSG00000159788.18|RGS12|pc|chr4:3413228:3413703:+	0	+
#Partially deleted in new
chr4	3417369	3419510	ENSG00000159788.18|RGS12|pc|chr4:3417369:3419510:+	0	+
#Deleted in new
chr4	34259086	34259127	ENSG00000248685.5|LINC02484|lncRNA|chr4:34259086:34259127:-	0	-
#Partially deleted in new
chr4	3426605	3426754	ENSG00000159788.18|RGS12|pc|chr4:3426605:3426754:+	0	+
#Deleted in new
chr4	3445875	3445896	ENSG00000109758.8|HGFAC|pc|chr4:3445875:3445896:+	0	+
#Deleted in new
chr4	34657605	34657685	ENSG00000250597.5|AC093689.1|lncRNA|chr4:34657605:34657685:+	0	+
#Deleted in new
chr4	34664557	34664610	ENSG00000250597.5|AC093689.1|lncRNA|chr4:34664557:34664610:+	0	+
#Deleted in new
chr4	34666557	34666610	ENSG00000250597.5|AC093689.1|lncRNA|chr4:34666557:34666610:+	0	+
#Deleted in new
chr4	34668680	34668740	ENSG00000250597.5|AC093689.1|lncRNA|chr4:34668680:34668740:+	0	+
#Deleted in new
chr4	34668765	34668829	ENSG00000250597.5|AC093689.1|lncRNA|chr4:34668765:34668829:+	0	+
#Partially deleted in new
chr4	34669197	34669396	ENSG00000250597.5|AC093689.1|lncRNA|chr4:34669197:34669396:+	0	+
#Partially deleted in new
chr4	34669197	34669432	ENSG00000250597.5|AC093689.1|lncRNA|chr4:34669197:34669432:+	0	+
#Deleted in new
chr4	3503596	3504457	ENSG00000261643.1|AL590235.1|lncRNA|chr4:3503596:3504457:-	0	-
#Split in new
chr4	3506375	3513036	ENSG00000163956.10|LRPAP1|pc|chr4:3506375:3513036:-	0	-
#Deleted in new
chr4	3544554	3544923	ENSG00000270090.5|AL590235.2|lncRNA|chr4:3544554:3544923:+	0	+
#Deleted in new
chr4	3544887	3544923	ENSG00000270090.5|AL590235.2|lncRNA|chr4:3544887:3544923:+	0	+
#Deleted in new
chr4	3545094	3545229	ENSG00000270090.5|AL590235.2|lncRNA|chr4:3545094:3545229:+	0	+
#Deleted in new
chr4	3546169	3546348	ENSG00000270090.5|AL590235.2|lncRNA|chr4:3546169:3546348:+	0	+
#Deleted in new
chr4	3548460	3548582	ENSG00000270090.5|AL590235.2|lncRNA|chr4:3548460:3548582:+	0	+
#Deleted in new
chr4	3548460	3548588	ENSG00000270090.5|AL590235.2|lncRNA|chr4:3548460:3548588:+	0	+
#Deleted in new
chr4	3548674	3548796	ENSG00000270090.5|AL590235.2|lncRNA|chr4:3548674:3548796:+	0	+
#Deleted in new
chr4	3576868	3577123	ENSG00000216560.4|LINC00955|lncRNA|chr4:3576868:3577123:+	0	+
#Deleted in new
chr4	3576933	3577123	ENSG00000216560.4|LINC00955|lncRNA|chr4:3576933:3577123:+	0	+
#Deleted in new
chr4	358207	358550	ENSG00000131127.13|ZNF141|pc|chr4:358207:358550:+	0	+
#Deleted in new
chr4	3588933	3589014	ENSG00000216560.4|LINC00955|lncRNA|chr4:3588933:3589014:+	0	+
#Partially deleted in new
chr4	3588933	3590004	ENSG00000216560.4|LINC00955|lncRNA|chr4:3588933:3590004:+	0	+
#Deleted in new
chr4	35967822	35967956	ENSG00000047365.11|ARAP2|pc|chr4:35967822:35967956:-	0	-
#Deleted in new
chr4	35985229	35985367	ENSG00000047365.11|ARAP2|pc|chr4:35985229:35985367:-	0	-
#Partially deleted in new
chr4	36005364	36007046	ENSG00000047365.11|ARAP2|pc|chr4:36005364:36007046:-	0	-
#Deleted in new
chr4	36006902	36007046	ENSG00000047365.11|ARAP2|pc|chr4:36006902:36007046:-	0	-
#Deleted in new
chr4	36015385	36015632	ENSG00000047365.11|ARAP2|pc|chr4:36015385:36015632:-	0	-
#Deleted in new
chr4	36015899	36015958	ENSG00000047365.11|ARAP2|pc|chr4:36015899:36015958:-	0	-
#Deleted in new
chr4	36019143	36019286	ENSG00000047365.11|ARAP2|pc|chr4:36019143:36019286:-	0	-
#Deleted in new
chr4	36045975	36046076	ENSG00000047365.11|ARAP2|pc|chr4:36045975:36046076:-	0	-
#Deleted in new
chr4	36045978	36046034	ENSG00000047365.11|ARAP2|pc|chr4:36045978:36046034:-	0	-
#Deleted in new
chr4	36045978	36046076	ENSG00000047365.11|ARAP2|pc|chr4:36045978:36046076:-	0	-
#Deleted in new
chr4	36046709	36046849	ENSG00000047365.11|ARAP2|pc|chr4:36046709:36046849:-	0	-
#Deleted in new
chr4	36046709	36047285	ENSG00000047365.11|ARAP2|pc|chr4:36046709:36047285:-	0	-
#Deleted in new
chr4	36057969	36058143	ENSG00000047365.11|ARAP2|pc|chr4:36057969:36058143:-	0	-
#Deleted in new
chr4	36157403	36157550	ENSG00000047365.11|ARAP2|pc|chr4:36157403:36157550:-	0	-
#Deleted in new
chr4	36245171	36245310	ENSG00000247193.2|AC104078.1|lncRNA|chr4:36245171:36245310:+	0	+
#Deleted in new
chr4	36248481	36248606	ENSG00000247193.2|AC104078.1|lncRNA|chr4:36248481:36248606:+	0	+
#Deleted in new
chr4	36259836	36260029	ENSG00000247193.2|AC104078.1|lncRNA|chr4:36259836:36260029:+	0	+
#Partially deleted in new
chr4	3633028	3633246	ENSG00000250681.1|AL121796.1|lncRNA|chr4:3633028:3633246:+	0	+
#Deleted in new
chr4	36332740	36332779	ENSG00000197057.9|DTHD1|pc|chr4:36332740:36332779:+	0	+
#Deleted in new
chr4	36333490	36333957	ENSG00000197057.9|DTHD1|pc|chr4:36333490:36333957:+	0	+
#Deleted in new
chr4	3633727	3633975	ENSG00000250681.1|AL121796.1|lncRNA|chr4:3633727:3633975:+	0	+
#Deleted in new
chr4	36392080	36392410	ENSG00000251438.1|AC104078.2|lncRNA|chr4:36392080:36392410:-	0	-
#Deleted in new
chr4	36582656	36582730	ENSG00000248215.5|LINC02505|lncRNA|chr4:36582656:36582730:-	0	-
#Deleted in new
chr4	36615417	36615526	ENSG00000248215.5|LINC02505|lncRNA|chr4:36615417:36615526:-	0	-
#Deleted in new
chr4	36615453	36615526	ENSG00000248215.5|LINC02505|lncRNA|chr4:36615453:36615526:-	0	-
#Deleted in new
chr4	36641849	36641900	ENSG00000248215.5|LINC02505|lncRNA|chr4:36641849:36641900:-	0	-
#Deleted in new
chr4	3673592	3673861	ENSG00000250632.1|LINC02171|lncRNA|chr4:3673592:3673861:-	0	-
#Deleted in new
chr4	3676602	3676681	ENSG00000250632.1|LINC02171|lncRNA|chr4:3676602:3676681:-	0	-
#Deleted in new
chr4	3677170	3677855	ENSG00000250632.1|LINC02171|lncRNA|chr4:3677170:3677855:-	0	-
#Deleted in new
chr4	37001815	37001895	ENSG00000261761.3|AL136537.2|lncRNA|chr4:37001815:37001895:+	0	+
#Deleted in new
chr4	37078576	37078632	ENSG00000247810.6|AL136537.1|lncRNA|chr4:37078576:37078632:+	0	+
#Deleted in new
chr4	37078581	37078632	ENSG00000247810.6|AL136537.1|lncRNA|chr4:37078581:37078632:+	0	+
#Deleted in new
chr4	37110741	37111043	ENSG00000247810.6|AL136537.1|lncRNA|chr4:37110741:37111043:+	0	+
#Deleted in new
chr4	37125019	37125424	ENSG00000247810.6|AL136537.1|lncRNA|chr4:37125019:37125424:+	0	+
#Duplicated in new
chr4	372663	373007	ENSG00000131127.13|ZNF141|pc|chr4:372663:373007:+	0	+
#Duplicated in new
chr4	372663	373026	ENSG00000131127.13|ZNF141|pc|chr4:372663:373026:+	0	+
#Partially deleted in new
chr4	3758747	3760026	ENSG00000250986.1|AC141928.1|lncRNA|chr4:3758747:3760026:-	0	-
#Partially deleted in new
chr4	37622824	37623495	ENSG00000154274.14|C4orf19|pc|chr4:37622824:37623495:+	0	+
#Deleted in new
chr4	378038	378204	ENSG00000131127.13|ZNF141|pc|chr4:378038:378204:+	0	+
#Deleted in new
chr4	37839516	37839663	ENSG00000169299.13|PGM2|pc|chr4:37839516:37839663:+	0	+
#Deleted in new
chr4	37839516	37839683	ENSG00000169299.13|PGM2|pc|chr4:37839516:37839683:+	0	+
#Partially deleted in new
chr4	37952005	37952812	ENSG00000065882.15|TBC1D1|pc|chr4:37952005:37952812:+	0	+
#Deleted in new
chr4	38054979	38055042	ENSG00000065882.15|TBC1D1|pc|chr4:38054979:38055042:+	0	+
#Partially deleted in new
chr4	38110180	38110734	ENSG00000065882.15|TBC1D1|pc|chr4:38110180:38110734:+	0	+
#Deleted in new
chr4	38111901	38112101	ENSG00000065882.15|TBC1D1|pc|chr4:38111901:38112101:+	0	+
#Deleted in new
chr4	38118396	38118453	ENSG00000065882.15|TBC1D1|pc|chr4:38118396:38118453:+	0	+
#Deleted in new
chr4	382620	383268	ENSG00000131127.13|ZNF141|pc|chr4:382620:383268:+	0	+
#Deleted in new
chr4	383094	383971	ENSG00000131127.13|ZNF141|pc|chr4:383094:383971:+	0	+
#Deleted in new
chr4	383094	384864	ENSG00000131127.13|ZNF141|pc|chr4:383094:384864:+	0	+
#Deleted in new
chr4	38390753	38391675	ENSG00000280015.1|AC024023.1|lncRNA|chr4:38390753:38391675:+	0	+
#Deleted in new
chr4	38451174	38451239	ENSG00000249534.1|LINC01258|lncRNA|chr4:38451174:38451239:-	0	-
#Deleted in new
chr4	38452572	38452814	ENSG00000249534.1|LINC01258|lncRNA|chr4:38452572:38452814:-	0	-
#Deleted in new
chr4	38453222	38453921	ENSG00000249534.1|LINC01258|lncRNA|chr4:38453222:38453921:-	0	-
#Deleted in new
chr4	38509766	38509947	ENSG00000249667.1|LINC01259|lncRNA|chr4:38509766:38509947:+	0	+
#Deleted in new
chr4	38618264	38618326	ENSG00000271958.1|AC021860.1|lncRNA|chr4:38618264:38618326:-	0	-
#Deleted in new
chr4	38619123	38619437	ENSG00000271958.1|AC021860.1|lncRNA|chr4:38619123:38619437:-	0	-
#Deleted in new
chr4	38619689	38620162	ENSG00000231160.9|KLF3-AS1|lncRNA|chr4:38619689:38620162:-	0	-
#Deleted in new
chr4	38625225	38625283	ENSG00000231160.9|KLF3-AS1|lncRNA|chr4:38625225:38625283:-	0	-
#Deleted in new
chr4	38625333	38625503	ENSG00000231160.9|KLF3-AS1|lncRNA|chr4:38625333:38625503:-	0	-
#Deleted in new
chr4	38625409	38625762	ENSG00000231160.9|KLF3-AS1|lncRNA|chr4:38625409:38625762:-	0	-
#Deleted in new
chr4	38625601	38625762	ENSG00000231160.9|KLF3-AS1|lncRNA|chr4:38625601:38625762:-	0	-
#Deleted in new
chr4	38626407	38628102	ENSG00000231160.9|KLF3-AS1|lncRNA|chr4:38626407:38628102:-	0	-
#Deleted in new
chr4	38628038	38628102	ENSG00000231160.9|KLF3-AS1|lncRNA|chr4:38628038:38628102:-	0	-
#Deleted in new
chr4	38775774	38775963	ENSG00000174123.10|TLR10|pc|chr4:38775774:38775963:-	0	-
#Deleted in new
chr4	38775774	38776196	ENSG00000174123.10|TLR10|pc|chr4:38775774:38776196:-	0	-
#Deleted in new
chr4	38775835	38775963	ENSG00000174123.10|TLR10|pc|chr4:38775835:38775963:-	0	-
#Deleted in new
chr4	38776109	38776197	ENSG00000174123.10|TLR10|pc|chr4:38776109:38776197:-	0	-
#Deleted in new
chr4	38778970	38779051	ENSG00000174123.10|TLR10|pc|chr4:38778970:38779051:-	0	-
#Deleted in new
chr4	38790676	38791231	ENSG00000174125.7|TLR1|pc|chr4:38790676:38791231:-	0	-
#Deleted in new
chr4	38790847	38791231	ENSG00000174125.7|TLR1|pc|chr4:38790847:38791231:-	0	-
#Deleted in new
chr4	38843638	38843791	ENSG00000174130.12|TLR6|pc|chr4:38843638:38843791:-	0	-
#Deleted in new
chr4	38998459	38998540	ENSG00000121895.7|TMEM156|pc|chr4:38998459:38998540:-	0	-
#Deleted in new
chr4	39032641	39032720	ENSG00000121895.7|TMEM156|pc|chr4:39032641:39032720:-	0	-
#Deleted in new
chr4	39032641	39032922	ENSG00000121895.7|TMEM156|pc|chr4:39032641:39032922:-	0	-
#Deleted in new
chr4	39120151	39120285	ENSG00000249207.1|AC079921.1|lncRNA|chr4:39120151:39120285:-	0	-
#Deleted in new
chr4	39126693	39126857	ENSG00000109790.16|KLHL5|pc|chr4:39126693:39126857:+	0	+
#Deleted in new
chr4	39126707	39126818	ENSG00000249207.1|AC079921.1|lncRNA|chr4:39126707:39126818:-	0	-
#Deleted in new
chr4	39133912	39134045	ENSG00000249685.1|AC079921.2|lncRNA|chr4:39133912:39134045:+	0	+
#Partially deleted in new
chr4	39217986	39219133	ENSG00000157796.17|WDR19|pc|chr4:39217986:39219133:+	0	+
#Partially deleted in new
chr4	39291979	39292074	ENSG00000035928.15|RFC1|pc|chr4:39291979:39292074:-	0	-
#Deleted in new
chr4	39307375	39307471	ENSG00000035928.15|RFC1|pc|chr4:39307375:39307471:-	0	-
#Deleted in new
chr4	39317863	39318070	ENSG00000035928.15|RFC1|pc|chr4:39317863:39318070:-	0	-
#Deleted in new
chr4	39322282	39322404	ENSG00000035928.15|RFC1|pc|chr4:39322282:39322404:-	0	-
#Deleted in new
chr4	39341486	39341665	ENSG00000035928.15|RFC1|pc|chr4:39341486:39341665:-	0	-
#Deleted in new
chr4	39355876	39355997	ENSG00000035928.15|RFC1|pc|chr4:39355876:39355997:-	0	-
#Partially deleted in new
chr4	39448300	39451536	ENSG00000134962.6|KLB|pc|chr4:39448300:39451536:+	0	+
#Partially deleted in new
chr4	39455810	39456538	ENSG00000163682.15|RPL9|pc|chr4:39455810:39456538:-	0	-
#Deleted in new
chr4	39466016	39466072	ENSG00000121897.14|LIAS|pc|chr4:39466016:39466072:+	0	+
#Deleted in new
chr4	39466016	39466117	ENSG00000121897.14|LIAS|pc|chr4:39466016:39466117:+	0	+
#Partially deleted in new
chr4	39467517	39468427	ENSG00000121897.14|LIAS|pc|chr4:39467517:39468427:+	0	+
#Deleted in new
chr4	39468118	39468427	ENSG00000121897.14|LIAS|pc|chr4:39468118:39468427:+	0	+
#Partially deleted in new
chr4	39477062	39479300	ENSG00000121897.14|LIAS|pc|chr4:39477062:39479300:+	0	+
#Partially deleted in new
chr4	39477062	39479506	ENSG00000121897.14|LIAS|pc|chr4:39477062:39479506:+	0	+
#Deleted in new
chr4	39484403	39485109	ENSG00000121897.14|LIAS|pc|chr4:39484403:39485109:+	0	+
#Deleted in new
chr4	39531968	39532130	ENSG00000249348.1|UGDH-AS1|lncRNA|chr4:39531968:39532130:+	0	+
#Partially deleted in new
chr4	39547835	39548135	ENSG00000163683.11|SMIM14|pc|chr4:39547835:39548135:-	0	-
#Deleted in new
chr4	39583934	39583958	ENSG00000163683.11|SMIM14|pc|chr4:39583934:39583958:-	0	-
#Deleted in new
chr4	39587922	39588059	ENSG00000249348.1|UGDH-AS1|lncRNA|chr4:39587922:39588059:+	0	+
#Deleted in new
chr4	39589586	39589719	ENSG00000249348.1|UGDH-AS1|lncRNA|chr4:39589586:39589719:+	0	+
#Deleted in new
chr4	39592672	39594707	ENSG00000249348.1|UGDH-AS1|lncRNA|chr4:39592672:39594707:+	0	+
#Deleted in new
chr4	39611965	39612110	ENSG00000163683.11|SMIM14|pc|chr4:39611965:39612110:-	0	-
#Deleted in new
chr4	39650376	39650454	ENSG00000255458.5|AC108471.2|lncRNA|chr4:39650376:39650454:+	0	+
#Deleted in new
chr4	39651265	39651314	ENSG00000255458.5|AC108471.2|lncRNA|chr4:39651265:39651314:+	0	+
#Deleted in new
chr4	39651265	39651406	ENSG00000255458.5|AC108471.2|lncRNA|chr4:39651265:39651406:+	0	+
#Deleted in new
chr4	39651265	39652072	ENSG00000255458.5|AC108471.2|lncRNA|chr4:39651265:39652072:+	0	+
#Deleted in new
chr4	39653203	39653465	ENSG00000255458.5|AC108471.2|lncRNA|chr4:39653203:39653465:+	0	+
#Deleted in new
chr4	39653372	39653397	ENSG00000255458.5|AC108471.2|lncRNA|chr4:39653372:39653397:+	0	+
#Deleted in new
chr4	39653406	39653465	ENSG00000255458.5|AC108471.2|lncRNA|chr4:39653406:39653465:+	0	+
#Deleted in new
chr4	39654386	39654509	ENSG00000255458.5|AC108471.2|lncRNA|chr4:39654386:39654509:+	0	+
#Deleted in new
chr4	39666122	39666568	ENSG00000255458.5|AC108471.2|lncRNA|chr4:39666122:39666568:+	0	+
#Deleted in new
chr4	39666122	39666644	ENSG00000255458.5|AC108471.2|lncRNA|chr4:39666122:39666644:+	0	+
#Partially deleted in new
chr4	39845817	39848561	ENSG00000121892.14|PDS5A|pc|chr4:39845817:39848561:-	0	-
#Deleted in new
chr4	39868669	39868735	ENSG00000121892.14|PDS5A|pc|chr4:39868669:39868735:-	0	-
#Deleted in new
chr4	40166674	40167831	ENSG00000260296.1|AC095057.3|lncRNA|chr4:40166674:40167831:+	0	+
#Deleted in new
chr4	40192966	40193123	ENSG00000168421.12|RHOH|pc|chr4:40192966:40193123:+	0	+
#Deleted in new
chr4	40192967	40193123	ENSG00000168421.12|RHOH|pc|chr4:40192967:40193123:+	0	+
#Deleted in new
chr4	40192989	40193123	ENSG00000168421.12|RHOH|pc|chr4:40192989:40193123:+	0	+
#Deleted in new
chr4	40193045	40193123	ENSG00000168421.12|RHOH|pc|chr4:40193045:40193123:+	0	+
#Deleted in new
chr4	40209462	40209669	ENSG00000168421.12|RHOH|pc|chr4:40209462:40209669:+	0	+
#Partially deleted in new
chr4	40212663	40212773	ENSG00000168421.12|RHOH|pc|chr4:40212663:40212773:+	0	+
#Deleted in new
chr4	40218042	40218180	ENSG00000168421.12|RHOH|pc|chr4:40218042:40218180:+	0	+
#Deleted in new
chr4	40218146	40218298	ENSG00000168421.12|RHOH|pc|chr4:40218146:40218298:+	0	+
#Deleted in new
chr4	40235176	40235358	ENSG00000168421.12|RHOH|pc|chr4:40235176:40235358:+	0	+
#Deleted in new
chr4	40235192	40235358	ENSG00000168421.12|RHOH|pc|chr4:40235192:40235358:+	0	+
#Deleted in new
chr4	40240127	40240345	ENSG00000168421.12|RHOH|pc|chr4:40240127:40240345:+	0	+
#Deleted in new
chr4	40265982	40266457	ENSG00000250338.1|AC095057.2|lncRNA|chr4:40265982:40266457:+	0	+
#Deleted in new
chr4	40326709	40326910	ENSG00000249241.1|LINC02265|lncRNA|chr4:40326709:40326910:+	0	+
#Deleted in new
chr4	40330159	40330419	ENSG00000249241.1|LINC02265|lncRNA|chr4:40330159:40330419:+	0	+
#Deleted in new
chr4	40347786	40348139	ENSG00000174343.5|CHRNA9|pc|chr4:40347786:40348139:+	0	+
#Partially deleted in new
chr4	40349586	40349935	ENSG00000174343.5|CHRNA9|pc|chr4:40349586:40349935:+	0	+
#Deleted in new
chr4	40426787	40427585	ENSG00000250893.1|AC098869.2|lncRNA|chr4:40426787:40427585:+	0	+
#Deleted in new
chr4	40455474	40455595	ENSG00000163694.14|RBM47|pc|chr4:40455474:40455595:-	0	-
#Partially deleted in new
chr4	40542522	40544506	ENSG00000163694.14|RBM47|pc|chr4:40542522:40544506:-	0	-
#Deleted in new
chr4	40544421	40544506	ENSG00000163694.14|RBM47|pc|chr4:40544421:40544506:-	0	-
#Deleted in new
chr4	40544426	40544506	ENSG00000163694.14|RBM47|pc|chr4:40544426:40544506:-	0	-
#Deleted in new
chr4	40762605	40762708	ENSG00000179299.16|NSUN7|pc|chr4:40762605:40762708:+	0	+
#Deleted in new
chr4	41118088	41118205	ENSG00000163697.16|APBB2|pc|chr4:41118088:41118205:-	0	-
#Deleted in new
chr4	41138041	41138156	ENSG00000163697.16|APBB2|pc|chr4:41138041:41138156:-	0	-
#Deleted in new
chr4	41193792	41194145	ENSG00000163697.16|APBB2|pc|chr4:41193792:41194145:-	0	-
#Deleted in new
chr4	41253882	41254170	ENSG00000251173.1|UCHL1-AS1|lncRNA|chr4:41253882:41254170:-	0	-
#Deleted in new
chr4	41453564	41453686	ENSG00000064042.17|LIMCH1|pc|chr4:41453564:41453686:+	0	+
#Deleted in new
chr4	416117	416537	ENSG00000272885.1|AC092574.1|lncRNA|chr4:416117:416537:-	0	-
#Deleted in new
chr4	41755661	41755778	ENSG00000249122.1|AC105389.1|lncRNA|chr4:41755661:41755778:+	0	+
#Deleted in new
chr4	41892442	41892583	ENSG00000249771.1|AC108210.1|lncRNA|chr4:41892442:41892583:-	0	-
#Partially deleted in new
chr4	41939720	41939828	ENSG00000109133.12|TMEM33|pc|chr4:41939720:41939828:+	0	+
#Partially deleted in new
chr4	41953759	41954021	ENSG00000109133.12|TMEM33|pc|chr4:41953759:41954021:+	0	+
#Deleted in new
chr4	41988740	41989237	ENSG00000272862.1|AC106052.1|lncRNA|chr4:41988740:41989237:-	0	-
#Partially deleted in new
chr4	42020415	42020775	ENSG00000014824.13|SLC30A9|pc|chr4:42020415:42020775:+	0	+
#Deleted in new
chr4	42070188	42070292	ENSG00000014824.13|SLC30A9|pc|chr4:42070188:42070292:+	0	+
#Deleted in new
chr4	42283272	42283391	ENSG00000250781.1|AC024022.1|lncRNA|chr4:42283272:42283391:-	0	-
#Deleted in new
chr4	42299011	42299311	ENSG00000250781.1|AC024022.1|lncRNA|chr4:42299011:42299311:-	0	-
#Partially deleted in new
chr4	42352503	42352896	ENSG00000250781.1|AC024022.1|lncRNA|chr4:42352503:42352896:-	0	-
#Partially deleted in new
chr4	42706437	42707335	ENSG00000251517.1|AC096734.1|lncRNA|chr4:42706437:42707335:+	0	+
#Deleted in new
chr4	4286518	4286572	ENSG00000145220.13|LYAR|pc|chr4:4286518:4286572:-	0	-
#Deleted in new
chr4	43193286	43193392	ENSG00000248939.1|AC111198.1|lncRNA|chr4:43193286:43193392:+	0	+
#Deleted in new
chr4	43195881	43195918	ENSG00000248939.1|AC111198.1|lncRNA|chr4:43195881:43195918:+	0	+
#Deleted in new
chr4	43231234	43231388	ENSG00000248939.1|AC111198.1|lncRNA|chr4:43231234:43231388:+	0	+
#Deleted in new
chr4	43234767	43234956	ENSG00000248939.1|AC111198.1|lncRNA|chr4:43234767:43234956:+	0	+
#Deleted in new
chr4	4329845	4329913	ENSG00000248516.1|AC105415.1|lncRNA|chr4:4329845:4329913:+	0	+
#Partially deleted in new
chr4	4333418	4334182	ENSG00000248516.1|AC105415.1|lncRNA|chr4:4333418:4334182:+	0	+
#Deleted in new
chr4	43340874	43340948	ENSG00000250657.1|AC097451.1|lncRNA|chr4:43340874:43340948:+	0	+
#Deleted in new
chr4	43458579	43458809	ENSG00000248143.1|LINC02383|lncRNA|chr4:43458579:43458809:-	0	-
#Deleted in new
chr4	4348139	4348471	ENSG00000168824.14|HGNC:18790|pc|chr4:4348139:4348471:+	0	+
#Deleted in new
chr4	4348312	4348471	ENSG00000168824.14|HGNC:18790|pc|chr4:4348312:4348471:+	0	+
#Deleted in new
chr4	43492435	43492543	ENSG00000248143.1|LINC02383|lncRNA|chr4:43492435:43492543:-	0	-
#Deleted in new
chr4	435769	435879	ENSG00000182903.15|ZNF721|pc|chr4:435769:435879:-	0	-
#Deleted in new
chr4	437445	437511	ENSG00000182903.15|ZNF721|pc|chr4:437445:437511:-	0	-
#Deleted in new
chr4	4380981	4381073	ENSG00000168824.14|HGNC:18790|pc|chr4:4380981:4381073:+	0	+
#Deleted in new
chr4	4380982	4381073	ENSG00000168824.14|HGNC:18790|pc|chr4:4380982:4381073:+	0	+
#Deleted in new
chr4	4381874	4381972	ENSG00000168824.14|HGNC:18790|pc|chr4:4381874:4381972:+	0	+
#Deleted in new
chr4	438583	438632	ENSG00000182903.15|ZNF721|pc|chr4:438583:438632:-	0	-
#Deleted in new
chr4	44016860	44017062	ENSG00000251350.1|LINC02475|lncRNA|chr4:44016860:44017062:+	0	+
#Deleted in new
chr4	44017061	44017370	ENSG00000251350.1|LINC02475|lncRNA|chr4:44017061:44017370:+	0	+
#Deleted in new
chr4	44019750	44020256	ENSG00000251350.1|LINC02475|lncRNA|chr4:44019750:44020256:+	0	+
#Partially deleted in new
chr4	44019750	44022063	ENSG00000251350.1|LINC02475|lncRNA|chr4:44019750:44022063:+	0	+
#Partially deleted in new
chr4	4425163	4426613	ENSG00000168818.9|STX18|pc|chr4:4425163:4426613:-	0	-
#Deleted in new
chr4	44293403	44293487	ENSG00000183783.6|KCTD8|pc|chr4:44293403:44293487:-	0	-
#Deleted in new
chr4	44293798	44293831	ENSG00000183783.6|KCTD8|pc|chr4:44293798:44293831:-	0	-
#Duplicated in new
chr4	444082	444432	ENSG00000182903.15|ZNF721|pc|chr4:444082:444432:-	0	-
#Deleted in new
chr4	44660448	44660618	ENSG00000177752.14|YIPF7|pc|chr4:44660448:44660618:-	0	-
#Deleted in new
chr4	44678360	44678556	ENSG00000177752.14|YIPF7|pc|chr4:44678360:44678556:-	0	-
#Deleted in new
chr4	44678426	44678585	ENSG00000151806.13|GUF1|pc|chr4:44678426:44678585:+	0	+
#Partially deleted in new
chr4	44698543	44700679	ENSG00000151806.13|GUF1|pc|chr4:44698543:44700679:+	0	+
#Partially deleted in new
chr4	44698543	44700759	ENSG00000151806.13|GUF1|pc|chr4:44698543:44700759:+	0	+
#Partially deleted in new
chr4	44698543	44700926	ENSG00000151806.13|GUF1|pc|chr4:44698543:44700926:+	0	+
#Deleted in new
chr4	44704404	44704965	ENSG00000272936.1|AC096586.1|lncRNA|chr4:44704404:44704965:+	0	+
#Deleted in new
chr4	4476120	4476144	ENSG00000248221.1|STX18-IT1|lncRNA|chr4:4476120:4476144:-	0	-
#Deleted in new
chr4	4477883	4477997	ENSG00000248221.1|STX18-IT1|lncRNA|chr4:4477883:4477997:-	0	-
#Deleted in new
chr4	4478666	4478974	ENSG00000248221.1|STX18-IT1|lncRNA|chr4:4478666:4478974:-	0	-
#Deleted in new
chr4	45009539	45009629	ENSG00000248744.1|AC108467.1|lncRNA|chr4:45009539:45009629:+	0	+
#Deleted in new
chr4	45014151	45014284	ENSG00000248744.1|AC108467.1|lncRNA|chr4:45014151:45014284:+	0	+
#Deleted in new
chr4	45028353	45028461	ENSG00000248744.1|AC108467.1|lncRNA|chr4:45028353:45028461:+	0	+
#Deleted in new
chr4	45051489	45051652	ENSG00000248744.1|AC108467.1|lncRNA|chr4:45051489:45051652:+	0	+
#Deleted in new
chr4	453455	454070	ENSG00000281016.1|AC092574.2|lncRNA|chr4:453455:454070:+	0	+
#Deleted in new
chr4	4544737	4544907	ENSG00000247708.7|STX18-AS1|lncRNA|chr4:4544737:4544907:+	0	+
#Deleted in new
chr4	4544737	4545060	ENSG00000247708.7|STX18-AS1|lncRNA|chr4:4544737:4545060:+	0	+
#Deleted in new
chr4	4591073	4591175	ENSG00000247708.7|STX18-AS1|lncRNA|chr4:4591073:4591175:+	0	+
#Partially deleted in new
chr4	46243547	46244215	ENSG00000260878.1|AC104072.1|lncRNA|chr4:46243547:46244215:-	0	-
#Deleted in new
chr4	4637537	4637904	ENSG00000247708.7|STX18-AS1|lncRNA|chr4:4637537:4637904:+	0	+
#Deleted in new
chr4	4648976	4649109	ENSG00000247708.7|STX18-AS1|lncRNA|chr4:4648976:4649109:+	0	+
#Deleted in new
chr4	4649372	4649542	ENSG00000247708.7|STX18-AS1|lncRNA|chr4:4649372:4649542:+	0	+
#Deleted in new
chr4	4649423	4649542	ENSG00000247708.7|STX18-AS1|lncRNA|chr4:4649423:4649542:+	0	+
#Deleted in new
chr4	46876638	46876737	ENSG00000170516.16|COX7B2|pc|chr4:46876638:46876737:-	0	-
#Deleted in new
chr4	46876638	46876760	ENSG00000170516.16|COX7B2|pc|chr4:46876638:46876760:-	0	-
#Deleted in new
chr4	46903875	46904014	ENSG00000170516.16|COX7B2|pc|chr4:46903875:46904014:-	0	-
#Deleted in new
chr4	4705672	4705910	ENSG00000247708.7|STX18-AS1|lncRNA|chr4:4705672:4705910:+	0	+
#Deleted in new
chr4	47467488	47467623	ENSG00000282904.1|AC107398.4|lncRNA|chr4:47467488:47467623:+	0	+
#Deleted in new
chr4	47467515	47467623	ENSG00000282904.1|AC107398.4|lncRNA|chr4:47467515:47467623:+	0	+
#Deleted in new
chr4	47469188	47469328	ENSG00000282904.1|AC107398.4|lncRNA|chr4:47469188:47469328:+	0	+
#Deleted in new
chr4	47790220	47790260	ENSG00000145244.11|CORIN|pc|chr4:47790220:47790260:-	0	-
#Deleted in new
chr4	47877011	47877144	ENSG00000170448.11|NFXL1|pc|chr4:47877011:47877144:-	0	-
#Deleted in new
chr4	47877011	47877191	ENSG00000170448.11|NFXL1|pc|chr4:47877011:47877191:-	0	-
#Deleted in new
chr4	47882241	47882344	ENSG00000282917.1|AC107068.2|lncRNA|chr4:47882241:47882344:+	0	+
#Deleted in new
chr4	47959023	47959141	ENSG00000163293.11|NIPAL1|pc|chr4:47959023:47959141:+	0	+
#Deleted in new
chr4	47970895	47971100	ENSG00000198515.13|CNGA1|pc|chr4:47970895:47971100:-	0	-
#Deleted in new
chr4	48010793	48010893	ENSG00000198515.13|CNGA1|pc|chr4:48010793:48010893:-	0	-
#Deleted in new
chr4	48012888	48012944	ENSG00000198515.13|CNGA1|pc|chr4:48012888:48012944:-	0	-
#Deleted in new
chr4	48037278	48037341	ENSG00000163293.11|NIPAL1|pc|chr4:48037278:48037341:+	0	+
#Partially deleted in new
chr4	48089384	48089824	ENSG00000074966.10|TXK|pc|chr4:48089384:48089824:-	0	-
#Deleted in new
chr4	48155789	48155866	ENSG00000135605.12|TEC|pc|chr4:48155789:48155866:-	0	-
#Deleted in new
chr4	4846438	4846540	ENSG00000273396.1|LINC01396|lncRNA|chr4:4846438:4846540:+	0	+
#Deleted in new
chr4	4847323	4847509	ENSG00000273396.1|LINC01396|lncRNA|chr4:4847323:4847509:+	0	+
#Deleted in new
chr4	48727430	48727491	ENSG00000075539.14|FRYL|pc|chr4:48727430:48727491:-	0	-
#Deleted in new
chr4	48837159	48837252	ENSG00000109180.14|OCIAD1|pc|chr4:48837159:48837252:+	0	+
#Deleted in new
chr4	48897153	48897203	ENSG00000145247.11|OCIAD2|pc|chr4:48897153:48897203:-	0	-
#Deleted in new
chr4	48897165	48897224	ENSG00000145247.11|OCIAD2|pc|chr4:48897165:48897224:-	0	-
#Deleted in new
chr4	48906657	48906727	ENSG00000145247.11|OCIAD2|pc|chr4:48906657:48906727:-	0	-
#Deleted in new
chr4	48906657	48906757	ENSG00000145247.11|OCIAD2|pc|chr4:48906657:48906757:-	0	-
#Deleted in new
chr4	48906657	48906774	ENSG00000145247.11|OCIAD2|pc|chr4:48906657:48906774:-	0	-
#Deleted in new
chr4	48906657	48906788	ENSG00000145247.11|OCIAD2|pc|chr4:48906657:48906788:-	0	-
#Deleted in new
chr4	48906657	48906798	ENSG00000145247.11|OCIAD2|pc|chr4:48906657:48906798:-	0	-
#Deleted in new
chr4	48906657	48906828	ENSG00000145247.11|OCIAD2|pc|chr4:48906657:48906828:-	0	-
#Deleted in new
chr4	48906657	48906937	ENSG00000145247.11|OCIAD2|pc|chr4:48906657:48906937:-	0	-
#Deleted in new
chr4	49229572	49231284	ENSG00000280043.1|AC118282.4|lncRNA|chr4:49229572:49231284:+	0	+
#Deleted in new
chr4	499055	499102	ENSG00000182903.15|ZNF721|pc|chr4:499055:499102:-	0	-
#Deleted in new
chr4	499055	499156	ENSG00000182903.15|ZNF721|pc|chr4:499055:499156:-	0	-
#Deleted in new
chr4	499236	499298	ENSG00000174227.15|PIGG|pc|chr4:499236:499298:+	0	+
#Deleted in new
chr4	501596	502329	ENSG00000174227.15|PIGG|pc|chr4:501596:502329:+	0	+
#Deleted in new
chr4	51848204	51848367	ENSG00000109184.14|DCUN1D4|pc|chr4:51848204:51848367:+	0	+
#Deleted in new
chr4	51860542	51860663	ENSG00000109184.14|DCUN1D4|pc|chr4:51860542:51860663:+	0	+
#Deleted in new
chr4	51887122	51887190	ENSG00000109184.14|DCUN1D4|pc|chr4:51887122:51887190:+	0	+
#Deleted in new
chr4	51887122	51887244	ENSG00000109184.14|DCUN1D4|pc|chr4:51887122:51887244:+	0	+
#Deleted in new
chr4	51905188	51905320	ENSG00000109184.14|DCUN1D4|pc|chr4:51905188:51905320:+	0	+
#Deleted in new
chr4	5204078	5204236	ENSG00000152953.12|STK32B|pc|chr4:5204078:5204236:+	0	+
#Deleted in new
chr4	52044804	52045035	ENSG00000251040.1|LINC02480|lncRNA|chr4:52044804:52045035:+	0	+
#Deleted in new
chr4	52046024	52046129	ENSG00000251040.1|LINC02480|lncRNA|chr4:52046024:52046129:+	0	+
#Deleted in new
chr4	52046678	52046954	ENSG00000251040.1|LINC02480|lncRNA|chr4:52046678:52046954:+	0	+
#Deleted in new
chr4	5214241	5214297	ENSG00000152953.12|STK32B|pc|chr4:5214241:5214297:+	0	+
#Deleted in new
chr4	524559	524911	ENSG00000174227.15|PIGG|pc|chr4:524559:524911:+	0	+
#Deleted in new
chr4	52650970	52651088	ENSG00000109189.12|USP46|pc|chr4:52650970:52651088:-	0	-
#Deleted in new
chr4	52685472	52685544	ENSG00000260120.1|AC104066.2|lncRNA|chr4:52685472:52685544:+	0	+
#Deleted in new
chr4	52691033	52692649	ENSG00000260120.1|AC104066.2|lncRNA|chr4:52691033:52692649:+	0	+
#Deleted in new
chr4	52713493	52713542	ENSG00000226950.6|DANCR|lncRNA|chr4:52713493:52713542:+	0	+
#Deleted in new
chr4	52713493	52714137	ENSG00000226950.6|DANCR|lncRNA|chr4:52713493:52714137:+	0	+
#Deleted in new
chr4	52713638	52713702	ENSG00000226950.6|DANCR|lncRNA|chr4:52713638:52713702:+	0	+
#Deleted in new
chr4	52714198	52714238	ENSG00000226950.6|DANCR|lncRNA|chr4:52714198:52714238:+	0	+
#Deleted in new
chr4	52714198	52714882	ENSG00000226950.6|DANCR|lncRNA|chr4:52714198:52714882:+	0	+
#Deleted in new
chr4	52722617	52722744	ENSG00000226887.7|ERVMER34-1|pc|chr4:52722617:52722744:-	0	-
#Deleted in new
chr4	52750709	52750829	ENSG00000226887.7|ERVMER34-1|pc|chr4:52750709:52750829:-	0	-
#Partially deleted in new
chr4	52750929	52751069	ENSG00000226887.7|ERVMER34-1|pc|chr4:52750929:52751069:-	0	-
#Deleted in new
chr4	52751342	52751399	ENSG00000226887.7|ERVMER34-1|pc|chr4:52751342:52751399:-	0	-
#Deleted in new
chr4	52751342	52751586	ENSG00000226887.7|ERVMER34-1|pc|chr4:52751342:52751586:-	0	-
#Deleted in new
chr4	52751342	52751640	ENSG00000226887.7|ERVMER34-1|pc|chr4:52751342:52751640:-	0	-
#Deleted in new
chr4	52789993	52790041	ENSG00000250302.1|LINC01618|lncRNA|chr4:52789993:52790041:+	0	+
#Deleted in new
chr4	52792048	52792194	ENSG00000250302.1|LINC01618|lncRNA|chr4:52792048:52792194:+	0	+
#Deleted in new
chr4	52799578	52799672	ENSG00000250302.1|LINC01618|lncRNA|chr4:52799578:52799672:+	0	+
#Deleted in new
chr4	52815152	52815464	ENSG00000250302.1|LINC01618|lncRNA|chr4:52815152:52815464:+	0	+
#Partially deleted in new
chr4	52945648	52945760	ENSG00000248115.1|AC023154.1|lncRNA|chr4:52945648:52945760:+	0	+
#Partially deleted in new
chr4	52945665	52945760	ENSG00000248115.1|AC023154.1|lncRNA|chr4:52945665:52945760:+	0	+
#Partially deleted in new
chr4	52948887	52951022	ENSG00000248115.1|AC023154.1|lncRNA|chr4:52948887:52951022:+	0	+
#Split in new
chr4	532113	533981	ENSG00000174227.15|PIGG|pc|chr4:532113:533981:+	0	+
#Deleted in new
chr4	532713	532820	ENSG00000174227.15|PIGG|pc|chr4:532713:532820:+	0	+
#Deleted in new
chr4	533100	533218	ENSG00000174227.15|PIGG|pc|chr4:533100:533218:+	0	+
#Deleted in new
chr4	5345327	5345455	ENSG00000152953.12|STK32B|pc|chr4:5345327:5345455:+	0	+
#Deleted in new
chr4	53500416	53500502	ENSG00000250930.5|LNX1-AS1|lncRNA|chr4:53500416:53500502:+	0	+
#Deleted in new
chr4	53501847	53501976	ENSG00000250930.5|LNX1-AS1|lncRNA|chr4:53501847:53501976:+	0	+
#Deleted in new
chr4	53501863	53501976	ENSG00000250930.5|LNX1-AS1|lncRNA|chr4:53501863:53501976:+	0	+
#Deleted in new
chr4	53501890	53501976	ENSG00000250930.5|LNX1-AS1|lncRNA|chr4:53501890:53501976:+	0	+
#Deleted in new
chr4	53522989	53523274	ENSG00000250930.5|LNX1-AS1|lncRNA|chr4:53522989:53523274:+	0	+
#Deleted in new
chr4	53603536	53604047	ENSG00000248494.1|LNX1-AS2|lncRNA|chr4:53603536:53604047:+	0	+
#Deleted in new
chr4	536704	536988	ENSG00000174227.15|PIGG|pc|chr4:536704:536988:+	0	+
#Partially deleted in new
chr4	53696018	53696139	ENSG00000072201.13|LNX1|pc|chr4:53696018:53696139:-	0	-
#Deleted in new
chr4	53701368	53701405	ENSG00000072201.13|LNX1|pc|chr4:53701368:53701405:-	0	-
#Deleted in new
chr4	53716831	53717007	ENSG00000249341.1|AC124017.1|lncRNA|chr4:53716831:53717007:+	0	+
#Deleted in new
chr4	53716892	53717007	ENSG00000249341.1|AC124017.1|lncRNA|chr4:53716892:53717007:+	0	+
#Deleted in new
chr4	53722060	53722209	ENSG00000249341.1|AC124017.1|lncRNA|chr4:53722060:53722209:+	0	+
#Deleted in new
chr4	537290	537363	ENSG00000174227.15|PIGG|pc|chr4:537290:537363:+	0	+
#Deleted in new
chr4	53735922	53737156	ENSG00000249341.1|AC124017.1|lncRNA|chr4:53735922:53737156:+	0	+
#Deleted in new
chr4	53907947	53908044	ENSG00000249706.1|AC105384.1|lncRNA|chr4:53907947:53908044:+	0	+
#Partially deleted in new
chr4	54059596	54061210	ENSG00000269506.2|AC110792.3|lncRNA|chr4:54059596:54061210:+	0	+
#Deleted in new
chr4	54240037	54240115	ENSG00000134853.11|PDGFRA|pc|chr4:54240037:54240115:+	0	+
#Deleted in new
chr4	54243574	54243672	ENSG00000134853.11|PDGFRA|pc|chr4:54243574:54243672:+	0	+
#Deleted in new
chr4	5432285	5432370	ENSG00000152953.12|STK32B|pc|chr4:5432285:5432370:+	0	+
#Deleted in new
chr4	5435703	5435933	ENSG00000152953.12|STK32B|pc|chr4:5435703:5435933:+	0	+
#Deleted in new
chr4	54376001	54376034	ENSG00000248518.1|AC098587.1|lncRNA|chr4:54376001:54376034:+	0	+
#Deleted in new
chr4	54376245	54376752	ENSG00000248518.1|AC098587.1|lncRNA|chr4:54376245:54376752:+	0	+
#Deleted in new
chr4	54603210	54605177	ENSG00000250456.1|LINC02260|lncRNA|chr4:54603210:54605177:-	0	-
#Deleted in new
chr4	54836160	54836416	ENSG00000249727.1|AC097494.1|lncRNA|chr4:54836160:54836416:-	0	-
#Partially deleted in new
chr4	54858821	54859241	ENSG00000251256.1|LINC02358|lncRNA|chr4:54858821:54859241:+	0	+
#Deleted in new
chr4	55053059	55053097	ENSG00000250646.1|AC111194.2|lncRNA|chr4:55053059:55053097:+	0	+
#Deleted in new
chr4	5524568	5524728	ENSG00000082929.8|LINC01587|lncRNA|chr4:5524568:5524728:+	0	+
#Deleted in new
chr4	5525155	5525496	ENSG00000082929.8|LINC01587|lncRNA|chr4:5525155:5525496:+	0	+
#Deleted in new
chr4	5525389	5525496	ENSG00000082929.8|LINC01587|lncRNA|chr4:5525389:5525496:+	0	+
#Deleted in new
chr4	5525406	5525496	ENSG00000082929.8|LINC01587|lncRNA|chr4:5525406:5525496:+	0	+
#Deleted in new
chr4	5526194	5526333	ENSG00000082929.8|LINC01587|lncRNA|chr4:5526194:5526333:+	0	+
#Deleted in new
chr4	5526215	5526333	ENSG00000082929.8|LINC01587|lncRNA|chr4:5526215:5526333:+	0	+
#Deleted in new
chr4	5527151	5527261	ENSG00000082929.8|LINC01587|lncRNA|chr4:5527151:5527261:+	0	+
#Deleted in new
chr4	5527387	5527595	ENSG00000082929.8|LINC01587|lncRNA|chr4:5527387:5527595:+	0	+
#Deleted in new
chr4	5527387	5527800	ENSG00000082929.8|LINC01587|lncRNA|chr4:5527387:5527800:+	0	+
#Deleted in new
chr4	5527387	5527801	ENSG00000082929.8|LINC01587|lncRNA|chr4:5527387:5527801:+	0	+
#Deleted in new
chr4	55365607	55365661	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55365607:55365661:-	0	-
#Deleted in new
chr4	55369605	55369727	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55369605:55369727:-	0	-
#Deleted in new
chr4	55374870	55375033	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55374870:55375033:-	0	-
#Deleted in new
chr4	55374870	55375188	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55374870:55375188:-	0	-
#Deleted in new
chr4	55374874	55375033	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55374874:55375033:-	0	-
#Deleted in new
chr4	55374923	55375033	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55374923:55375033:-	0	-
#Deleted in new
chr4	55375531	55375972	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55375531:55375972:-	0	-
#Deleted in new
chr4	55377606	55377770	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55377606:55377770:-	0	-
#Deleted in new
chr4	55377606	55377786	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55377606:55377786:-	0	-
#Deleted in new
chr4	55377606	55377836	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55377606:55377836:-	0	-
#Deleted in new
chr4	55381724	55381893	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55381724:55381893:-	0	-
#Deleted in new
chr4	55382506	55382562	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55382506:55382562:-	0	-
#Deleted in new
chr4	55382506	55382642	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55382506:55382642:-	0	-
#Deleted in new
chr4	55382506	55382663	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55382506:55382663:-	0	-
#Deleted in new
chr4	55382537	55382679	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55382537:55382679:-	0	-
#Deleted in new
chr4	55383291	55383359	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55383291:55383359:-	0	-
#Deleted in new
chr4	55383291	55383396	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55383291:55383396:-	0	-
#Deleted in new
chr4	55383291	55383433	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55383291:55383433:-	0	-
#Deleted in new
chr4	55383291	55383450	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55383291:55383450:-	0	-
#Deleted in new
chr4	55383764	55383805	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55383764:55383805:-	0	-
#Deleted in new
chr4	55383764	55383862	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55383764:55383862:-	0	-
#Deleted in new
chr4	55383764	55383882	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55383764:55383882:-	0	-
#Partially deleted in new
chr4	55386308	55386892	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55386308:55386892:-	0	-
#Deleted in new
chr4	55386702	55386890	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55386702:55386890:-	0	-
#Deleted in new
chr4	55386777	55387537	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55386777:55387537:-	0	-
#Deleted in new
chr4	55387271	55387443	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55387271:55387443:-	0	-
#Deleted in new
chr4	55387271	55387537	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55387271:55387537:-	0	-
#Deleted in new
chr4	55387271	55387541	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55387271:55387541:-	0	-
#Deleted in new
chr4	55387320	55387537	ENSG00000249700.8|SRD5A3-AS1|lncRNA|chr4:55387320:55387537:-	0	-
#Deleted in new
chr4	55387948	55388271	ENSG00000273257.1|AC069200.1|lncRNA|chr4:55387948:55388271:+	0	+
#Deleted in new
chr4	55415270	55416157	ENSG00000134851.12|TMEM165|pc|chr4:55415270:55416157:+	0	+
#Partially deleted in new
chr4	55423113	55424643	ENSG00000134851.12|TMEM165|pc|chr4:55423113:55424643:+	0	+
#Deleted in new
chr4	5542771	5542909	ENSG00000173040.12|EVC2|pc|chr4:5542771:5542909:-	0	-
#Deleted in new
chr4	55452238	55452458	ENSG00000134851.12|TMEM165|pc|chr4:55452238:55452458:+	0	+
#Deleted in new
chr4	55486392	55486549	ENSG00000134852.14|CLOCK|pc|chr4:55486392:55486549:-	0	-
#Deleted in new
chr4	55486393	55486549	ENSG00000134852.14|CLOCK|pc|chr4:55486393:55486549:-	0	-
#Deleted in new
chr4	55509911	55510027	ENSG00000134852.14|CLOCK|pc|chr4:55509911:55510027:-	0	-
#Deleted in new
chr4	55509911	55510065	ENSG00000134852.14|CLOCK|pc|chr4:55509911:55510065:-	0	-
#Deleted in new
chr4	55509911	55510066	ENSG00000134852.14|CLOCK|pc|chr4:55509911:55510066:-	0	-
#Deleted in new
chr4	55900558	55900692	ENSG00000090989.17|EXOC1|pc|chr4:55900558:55900692:+	0	+
#Deleted in new
chr4	56387361	56387423	ENSG00000157426.13|AASDH|pc|chr4:56387361:56387423:-	0	-
#Deleted in new
chr4	56387361	56387458	ENSG00000157426.13|AASDH|pc|chr4:56387361:56387458:-	0	-
#Deleted in new
chr4	56387361	56387459	ENSG00000157426.13|AASDH|pc|chr4:56387361:56387459:-	0	-
#Deleted in new
chr4	56387361	56387469	ENSG00000157426.13|AASDH|pc|chr4:56387361:56387469:-	0	-
#Deleted in new
chr4	56387361	56387472	ENSG00000157426.13|AASDH|pc|chr4:56387361:56387472:-	0	-
#Deleted in new
chr4	56387361	56387500	ENSG00000157426.13|AASDH|pc|chr4:56387361:56387500:-	0	-
#Deleted in new
chr4	56387361	56387508	ENSG00000157426.13|AASDH|pc|chr4:56387361:56387508:-	0	-
#Deleted in new
chr4	56387624	56388153	ENSG00000269921.1|AC068620.2|lncRNA|chr4:56387624:56388153:+	0	+
#Partially deleted in new
chr4	56399178	56400916	ENSG00000128059.8|PPAT|pc|chr4:56399178:56400916:-	0	-
#Deleted in new
chr4	56403979	56404118	ENSG00000128059.8|PPAT|pc|chr4:56403979:56404118:-	0	-
#Deleted in new
chr4	56408098	56408328	ENSG00000128059.8|PPAT|pc|chr4:56408098:56408328:-	0	-
#Deleted in new
chr4	56446356	56446377	ENSG00000128050.8|PAICS|pc|chr4:56446356:56446377:+	0	+
#Partially deleted in new
chr4	56459371	56461361	ENSG00000128050.8|PAICS|pc|chr4:56459371:56461361:+	0	+
#Partially deleted in new
chr4	56459371	56461368	ENSG00000128050.8|PAICS|pc|chr4:56459371:56461368:+	0	+
#Partially deleted in new
chr4	56459371	56464579	ENSG00000128050.8|PAICS|pc|chr4:56459371:56464579:+	0	+
#Deleted in new
chr4	56505208	56505509	ENSG00000196503.3|ARL9|pc|chr4:56505208:56505509:+	0	+
#Deleted in new
chr4	56557715	56557858	ENSG00000249693.2|THEGL|pc|chr4:56557715:56557858:+	0	+
#Deleted in new
chr4	56672654	56672801	ENSG00000171476.21|HOPX|pc|chr4:56672654:56672801:-	0	-
#Deleted in new
chr4	56816710	56816714	ENSG00000128040.10|SPINK2|pc|chr4:56816710:56816714:-	0	-
#Deleted in new
chr4	56922331	56922378	ENSG00000084093.16|REST|pc|chr4:56922331:56922378:+	0	+
#Deleted in new
chr4	5694334	5694501	ENSG00000173040.12|EVC2|pc|chr4:5694334:5694501:-	0	-
#Deleted in new
chr4	5697592	5697647	ENSG00000173040.12|EVC2|pc|chr4:5697592:5697647:-	0	-
#Partially deleted in new
chr4	56977781	56978000	ENSG00000047315.15|POLR2B|pc|chr4:56977781:56978000:+	0	+
#Deleted in new
chr4	56985259	56985457	ENSG00000047315.15|POLR2B|pc|chr4:56985259:56985457:+	0	+
#Deleted in new
chr4	56985279	56985457	ENSG00000047315.15|POLR2B|pc|chr4:56985279:56985457:+	0	+
#Deleted in new
chr4	57010172	57010200	ENSG00000047315.15|POLR2B|pc|chr4:57010172:57010200:+	0	+
#Deleted in new
chr4	57154576	57154741	ENSG00000250192.1|AC105390.1|lncRNA|chr4:57154576:57154741:+	0	+
#Partially deleted in new
chr4	57155014	57155128	ENSG00000250192.1|AC105390.1|lncRNA|chr4:57155014:57155128:+	0	+
#Deleted in new
chr4	57188169	57188319	ENSG00000245067.6|IGFBP7-AS1|lncRNA|chr4:57188169:57188319:+	0	+
#Partially deleted in new
chr4	57494553	57495233	ENSG00000251459.1|AC013724.1|lncRNA|chr4:57494553:57495233:+	0	+
#Deleted in new
chr4	5758080	5758311	ENSG00000072840.12|EVC|pc|chr4:5758080:5758311:+	0	+
#Partially deleted in new
chr4	57605665	57605872	ENSG00000251049.2|AC107396.1|lncRNA|chr4:57605665:57605872:-	0	-
#Partially deleted in new
chr4	57605693	57605871	ENSG00000250333.1|AC093725.2|lncRNA|chr4:57605693:57605871:-	0	-
#Deleted in new
chr4	57625189	57625312	ENSG00000250333.1|AC093725.2|lncRNA|chr4:57625189:57625312:-	0	-
#Partially deleted in new
chr4	57720034	57720176	ENSG00000249831.2|AC093725.1|lncRNA|chr4:57720034:57720176:+	0	+
#Partially deleted in new
chr4	5810952	5814305	ENSG00000072840.12|EVC|pc|chr4:5810952:5814305:+	0	+
#Deleted in new
chr4	584278	584866	ENSG00000283183.1|AC116565.2|lncRNA|chr4:584278:584866:+	0	+
#Deleted in new
chr4	58524514	58524824	ENSG00000250340.1|LINC02494|lncRNA|chr4:58524514:58524824:-	0	-
#Deleted in new
chr4	58536273	58536328	ENSG00000250340.1|LINC02494|lncRNA|chr4:58536273:58536328:-	0	-
#Partially deleted in new
chr4	58563506	58563717	ENSG00000250078.1|AC019133.1|lncRNA|chr4:58563506:58563717:-	0	-
#Deleted in new
chr4	58565068	58565122	ENSG00000250078.1|AC019133.1|lncRNA|chr4:58565068:58565122:-	0	-
#Deleted in new
chr4	58780625	58781126	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58780625:58781126:-	0	-
#Deleted in new
chr4	58782544	58782642	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58782544:58782642:-	0	-
#Deleted in new
chr4	58784035	58784261	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58784035:58784261:-	0	-
#Deleted in new
chr4	58847167	58847365	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58847167:58847365:-	0	-
#Deleted in new
chr4	58850969	58851205	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58850969:58851205:-	0	-
#Deleted in new
chr4	58857624	58857748	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58857624:58857748:-	0	-
#Deleted in new
chr4	58860510	58860608	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58860510:58860608:-	0	-
#Deleted in new
chr4	58860884	58860969	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58860884:58860969:-	0	-
#Deleted in new
chr4	58977013	58977097	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58977013:58977097:-	0	-
#Deleted in new
chr4	58977013	58977113	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58977013:58977113:-	0	-
#Deleted in new
chr4	58984005	58984102	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58984005:58984102:-	0	-
#Deleted in new
chr4	58984005	58984141	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58984005:58984141:-	0	-
#Deleted in new
chr4	58984005	58984152	ENSG00000251339.5|AC017091.1|lncRNA|chr4:58984005:58984152:-	0	-
#Deleted in new
chr4	58984281	58984335	ENSG00000251266.1|LINC02429|lncRNA|chr4:58984281:58984335:+	0	+
#Deleted in new
chr4	58987181	58987684	ENSG00000249382.2|AC097501.1|lncRNA|chr4:58987181:58987684:-	0	-
#Deleted in new
chr4	58987502	58987684	ENSG00000249382.2|AC097501.1|lncRNA|chr4:58987502:58987684:-	0	-
#Deleted in new
chr4	58987530	58987955	ENSG00000249382.2|AC097501.1|lncRNA|chr4:58987530:58987955:-	0	-
#Deleted in new
chr4	58987815	58987889	ENSG00000249382.2|AC097501.1|lncRNA|chr4:58987815:58987889:-	0	-
#Deleted in new
chr4	58987815	58987955	ENSG00000249382.2|AC097501.1|lncRNA|chr4:58987815:58987955:-	0	-
#Deleted in new
chr4	58988103	58988118	ENSG00000249382.2|AC097501.1|lncRNA|chr4:58988103:58988118:-	0	-
#Deleted in new
chr4	58988103	58988152	ENSG00000249382.2|AC097501.1|lncRNA|chr4:58988103:58988152:-	0	-
#Deleted in new
chr4	58988103	58988160	ENSG00000249382.2|AC097501.1|lncRNA|chr4:58988103:58988160:-	0	-
#Deleted in new
chr4	59013572	59013625	ENSG00000251266.1|LINC02429|lncRNA|chr4:59013572:59013625:+	0	+
#Deleted in new
chr4	59040586	59040691	ENSG00000251266.1|LINC02429|lncRNA|chr4:59040586:59040691:+	0	+
#Deleted in new
chr4	59075179	59075256	ENSG00000250375.2|AC097501.2|lncRNA|chr4:59075179:59075256:-	0	-
#Deleted in new
chr4	59551141	59551254	ENSG00000249392.1|AC096588.1|lncRNA|chr4:59551141:59551254:-	0	-
#Deleted in new
chr4	59561000	59561087	ENSG00000249392.1|AC096588.1|lncRNA|chr4:59561000:59561087:-	0	-
#Deleted in new
chr4	59564222	59564345	ENSG00000249392.1|AC096588.1|lncRNA|chr4:59564222:59564345:-	0	-
#Deleted in new
chr4	59574297	59574358	ENSG00000249392.1|AC096588.1|lncRNA|chr4:59574297:59574358:-	0	-
#Deleted in new
chr4	59630210	59630324	ENSG00000249392.1|AC096588.1|lncRNA|chr4:59630210:59630324:-	0	-
#Deleted in new
chr4	59767815	59768234	ENSG00000249892.1|AC093857.1|lncRNA|chr4:59767815:59768234:-	0	-
#Deleted in new
chr4	59786553	59786666	ENSG00000249892.1|AC093857.1|lncRNA|chr4:59786553:59786666:-	0	-
#Deleted in new
chr4	59791944	59792114	ENSG00000249892.1|AC093857.1|lncRNA|chr4:59791944:59792114:-	0	-
#Deleted in new
chr4	60750585	60750865	ENSG00000249066.1|LINC02496|lncRNA|chr4:60750585:60750865:+	0	+
#Deleted in new
chr4	60788333	60788452	ENSG00000249066.1|LINC02496|lncRNA|chr4:60788333:60788452:+	0	+
#Deleted in new
chr4	60789814	60789999	ENSG00000249066.1|LINC02496|lncRNA|chr4:60789814:60789999:+	0	+
#Partially deleted in new
chr4	61153535	61153729	ENSG00000240152.2|LINC02271|lncRNA|chr4:61153535:61153729:+	0	+
#Partially deleted in new
chr4	61153535	61153962	ENSG00000240152.2|LINC02271|lncRNA|chr4:61153535:61153962:+	0	+
#Deleted in new
chr4	61385410	61385769	ENSG00000150471.16|ADGRL3|pc|chr4:61385410:61385769:+	0	+
#Deleted in new
chr4	61420245	61420700	ENSG00000205682.2|AC020741.1|lncRNA|chr4:61420245:61420700:-	0	-
#Deleted in new
chr4	61425311	61425437	ENSG00000205682.2|AC020741.1|lncRNA|chr4:61425311:61425437:-	0	-
#Deleted in new
chr4	61426723	61428221	ENSG00000205682.2|AC020741.1|lncRNA|chr4:61426723:61428221:-	0	-
#Partially deleted in new
chr4	6202794	6206649	ENSG00000251408.1|AC113615.1|lncRNA|chr4:6202794:6206649:+	0	+
#Deleted in new
chr4	62127046	62127087	ENSG00000248692.5|ADGRL3-AS1|lncRNA|chr4:62127046:62127087:-	0	-
#Deleted in new
chr4	62155941	62156041	ENSG00000248692.5|ADGRL3-AS1|lncRNA|chr4:62155941:62156041:-	0	-
#Deleted in new
chr4	62157322	62157385	ENSG00000248692.5|ADGRL3-AS1|lncRNA|chr4:62157322:62157385:-	0	-
#Deleted in new
chr4	62157368	62157385	ENSG00000248692.5|ADGRL3-AS1|lncRNA|chr4:62157368:62157385:-	0	-
#Deleted in new
chr4	62161746	62161863	ENSG00000248692.5|ADGRL3-AS1|lncRNA|chr4:62161746:62161863:-	0	-
#Deleted in new
chr4	62165513	62165545	ENSG00000248692.5|ADGRL3-AS1|lncRNA|chr4:62165513:62165545:-	0	-
#Deleted in new
chr4	62165513	62165554	ENSG00000248692.5|ADGRL3-AS1|lncRNA|chr4:62165513:62165554:-	0	-
#Deleted in new
chr4	63128310	63128336	ENSG00000251055.2|AC097491.1|lncRNA|chr4:63128310:63128336:+	0	+
#Deleted in new
chr4	63143043	63143063	ENSG00000251055.2|AC097491.1|lncRNA|chr4:63143043:63143063:+	0	+
#Deleted in new
chr4	63143255	63143881	ENSG00000251055.2|AC097491.1|lncRNA|chr4:63143255:63143881:+	0	+
#Deleted in new
chr4	63468700	63468945	ENSG00000250775.1|AC093730.1|lncRNA|chr4:63468700:63468945:-	0	-
#Deleted in new
chr4	63473993	63474138	ENSG00000250775.1|AC093730.1|lncRNA|chr4:63473993:63474138:-	0	-
#Deleted in new
chr4	63494220	63494278	ENSG00000250775.1|AC093730.1|lncRNA|chr4:63494220:63494278:-	0	-
#Deleted in new
chr4	6420945	6421118	ENSG00000074211.13|PPP2R2C|pc|chr4:6420945:6421118:-	0	-
#Deleted in new
chr4	64275256	64277051	ENSG00000205678.7|TECRL|pc|chr4:64275256:64277051:-	0	-
#Partially deleted in new
chr4	64277701	64280199	ENSG00000205678.7|TECRL|pc|chr4:64277701:64280199:-	0	-
#Deleted in new
chr4	64914280	64917643	ENSG00000250125.1|LINC02232|lncRNA|chr4:64914280:64917643:-	0	-
#Deleted in new
chr4	64937606	64937839	ENSG00000250125.1|LINC02232|lncRNA|chr4:64937606:64937839:-	0	-
#Deleted in new
chr4	64939272	64939365	ENSG00000250125.1|LINC02232|lncRNA|chr4:64939272:64939365:-	0	-
#Deleted in new
chr4	64939955	64940036	ENSG00000250125.1|LINC02232|lncRNA|chr4:64939955:64940036:-	0	-
#Partially deleted in new
chr4	64977488	64977629	ENSG00000250125.1|LINC02232|lncRNA|chr4:64977488:64977629:-	0	-
#Deleted in new
chr4	65004402	65004500	ENSG00000250125.1|LINC02232|lncRNA|chr4:65004402:65004500:-	0	-
#Deleted in new
chr4	651558	651757	ENSG00000133256.12|PDE6B|pc|chr4:651558:651757:+	0	+
#Deleted in new
chr4	651984	652088	ENSG00000133256.12|PDE6B|pc|chr4:651984:652088:+	0	+
#Deleted in new
chr4	652272	652553	ENSG00000133256.12|PDE6B|pc|chr4:652272:652553:+	0	+
#Deleted in new
chr4	6523442	6523547	ENSG00000074211.13|PPP2R2C|pc|chr4:6523442:6523547:-	0	-
#Deleted in new
chr4	652495	652553	ENSG00000133256.12|PDE6B|pc|chr4:652495:652553:+	0	+
#Deleted in new
chr4	652849	653260	ENSG00000242686.4|AC107464.1|lncRNA|chr4:652849:653260:-	0	-
#Partially deleted in new
chr4	652954	653559	ENSG00000242686.4|AC107464.1|lncRNA|chr4:652954:653559:-	0	-
#Partially deleted in new
chr4	653058	653683	ENSG00000242686.4|AC107464.1|lncRNA|chr4:653058:653683:-	0	-
#Deleted in new
chr4	653176	653319	ENSG00000133256.12|PDE6B|pc|chr4:653176:653319:+	0	+
#Deleted in new
chr4	653179	653319	ENSG00000133256.12|PDE6B|pc|chr4:653179:653319:+	0	+
#Deleted in new
chr4	653210	653319	ENSG00000133256.12|PDE6B|pc|chr4:653210:653319:+	0	+
#Deleted in new
chr4	6535270	6535377	ENSG00000074211.13|PPP2R2C|pc|chr4:6535270:6535377:-	0	-
#Deleted in new
chr4	6555533	6555678	ENSG00000074211.13|PPP2R2C|pc|chr4:6555533:6555678:-	0	-
#Deleted in new
chr4	6563559	6563600	ENSG00000074211.13|PPP2R2C|pc|chr4:6563559:6563600:-	0	-
#Deleted in new
chr4	65702201	65702345	ENSG00000248479.1|AC104137.1|lncRNA|chr4:65702201:65702345:+	0	+
#Deleted in new
chr4	65858760	65858879	ENSG00000251527.1|AC097110.1|lncRNA|chr4:65858760:65858879:+	0	+
#Deleted in new
chr4	65998845	65999308	ENSG00000249413.2|AC116049.2|lncRNA|chr4:65998845:65999308:+	0	+
#Deleted in new
chr4	66003280	66003362	ENSG00000272304.1|AC096721.1|lncRNA|chr4:66003280:66003362:+	0	+
#Deleted in new
chr4	66016322	66016792	ENSG00000272304.1|AC096721.1|lncRNA|chr4:66016322:66016792:+	0	+
#Deleted in new
chr4	66122355	66122428	ENSG00000249413.2|AC116049.2|lncRNA|chr4:66122355:66122428:+	0	+
#Deleted in new
chr4	66135387	66135466	ENSG00000249413.2|AC116049.2|lncRNA|chr4:66135387:66135466:+	0	+
#Deleted in new
chr4	66149873	66150012	ENSG00000249413.2|AC116049.2|lncRNA|chr4:66149873:66150012:+	0	+
#Partially deleted in new
chr4	6617379	6622401	ENSG00000013288.8|MAN2B2|pc|chr4:6617379:6622401:+	0	+
#Deleted in new
chr4	6618794	6618916	ENSG00000013288.8|MAN2B2|pc|chr4:6618794:6618916:+	0	+
#Partially deleted in new
chr4	6621187	6623362	ENSG00000013288.8|MAN2B2|pc|chr4:6621187:6623362:+	0	+
#Partially deleted in new
chr4	6640090	6640708	ENSG00000179010.14|MRFAP1|pc|chr4:6640090:6640708:+	0	+
#Deleted in new
chr4	6670724	6670999	ENSG00000251580.1|LINC02482|lncRNA|chr4:6670724:6670999:-	0	-
#Deleted in new
chr4	6670727	6670993	ENSG00000251580.1|LINC02482|lncRNA|chr4:6670727:6670993:-	0	-
#Deleted in new
chr4	6673450	6674706	ENSG00000170846.16|AC093323.1|lncRNA|chr4:6673450:6674706:+	0	+
#Deleted in new
chr4	6673683	6673823	ENSG00000251580.1|LINC02482|lncRNA|chr4:6673683:6673823:-	0	-
#Deleted in new
chr4	6673683	6673830	ENSG00000251580.1|LINC02482|lncRNA|chr4:6673683:6673830:-	0	-
#Deleted in new
chr4	6673968	6676013	ENSG00000170846.16|AC093323.1|lncRNA|chr4:6673968:6676013:+	0	+
#Deleted in new
chr4	6674087	6674637	ENSG00000170846.16|AC093323.1|lncRNA|chr4:6674087:6674637:+	0	+
#Deleted in new
chr4	6674992	6676047	ENSG00000170846.16|AC093323.1|lncRNA|chr4:6674992:6676047:+	0	+
#Deleted in new
chr4	6687447	6688896	ENSG00000246526.2|LINC002481|lncRNA|chr4:6687447:6688896:-	0	-
#Deleted in new
chr4	6689308	6689459	ENSG00000246526.2|LINC002481|lncRNA|chr4:6689308:6689459:-	0	-
#Deleted in new
chr4	6690298	6690519	ENSG00000246526.2|LINC002481|lncRNA|chr4:6690298:6690519:-	0	-
#Deleted in new
chr4	6691994	6692970	ENSG00000279859.2|AC093323.2|lncRNA|chr4:6691994:6692970:-	0	-
#Deleted in new
chr4	6692054	6692462	ENSG00000279859.2|AC093323.2|lncRNA|chr4:6692054:6692462:-	0	-
#Deleted in new
chr4	6697860	6698809	ENSG00000282742.1|AC093323.3|lncRNA|chr4:6697860:6698809:-	0	-
#Duplicated in new
chr4	6707700	6708643	ENSG00000178988.10|MRFAP1L1|pc|chr4:6707700:6708643:-	0	-
#Partially deleted in new
chr4	673579	675854	ENSG00000215375.6|MYL5|pc|chr4:673579:675854:+	0	+
#Deleted in new
chr4	67417304	67418991	ENSG00000250075.5|AC104806.2|lncRNA|chr4:67417304:67418991:-	0	-
#Deleted in new
chr4	67418541	67418991	ENSG00000250075.5|AC104806.2|lncRNA|chr4:67418541:67418991:-	0	-
#Deleted in new
chr4	67419893	67420049	ENSG00000250075.5|AC104806.2|lncRNA|chr4:67419893:67420049:-	0	-
#Deleted in new
chr4	67420758	67421058	ENSG00000250075.5|AC104806.2|lncRNA|chr4:67420758:67421058:-	0	-
#Deleted in new
chr4	67420897	67421054	ENSG00000250075.5|AC104806.2|lncRNA|chr4:67420897:67421054:-	0	-
#Deleted in new
chr4	67420897	67421058	ENSG00000250075.5|AC104806.2|lncRNA|chr4:67420897:67421058:-	0	-
#Deleted in new
chr4	67421891	67422000	ENSG00000250075.5|AC104806.2|lncRNA|chr4:67421891:67422000:-	0	-
#Deleted in new
chr4	674502	675453	ENSG00000215375.6|MYL5|pc|chr4:674502:675453:+	0	+
#Deleted in new
chr4	674541	674683	ENSG00000215375.6|MYL5|pc|chr4:674541:674683:+	0	+
#Deleted in new
chr4	674559	674787	ENSG00000215375.6|MYL5|pc|chr4:674559:674787:+	0	+
#Deleted in new
chr4	67468217	67468251	ENSG00000250075.5|AC104806.2|lncRNA|chr4:67468217:67468251:-	0	-
#Partially deleted in new
chr4	67468747	67472675	ENSG00000145241.10|CENPC|pc|chr4:67468747:67472675:-	0	-
#Deleted in new
chr4	67510672	67511025	ENSG00000145241.10|CENPC|pc|chr4:67510672:67511025:-	0	-
#Deleted in new
chr4	67607193	67607337	ENSG00000035720.7|STAP1|pc|chr4:67607193:67607337:+	0	+
#Partially deleted in new
chr4	67607855	67610313	ENSG00000279464.1|AC096720.2|lncRNA|chr4:67607855:67610313:-	0	-
#Split in new
chr4	67720421	67722502	ENSG00000248049.6|UBA6-AS1|lncRNA|chr4:67720421:67722502:+	0	+
#Deleted in new
chr4	67721476	67722505	ENSG00000248049.6|UBA6-AS1|lncRNA|chr4:67721476:67722505:+	0	+
#Deleted in new
chr4	67728539	67728686	ENSG00000248049.6|UBA6-AS1|lncRNA|chr4:67728539:67728686:+	0	+
#Deleted in new
chr4	67730073	67730170	ENSG00000248049.6|UBA6-AS1|lncRNA|chr4:67730073:67730170:+	0	+
#Deleted in new
chr4	67731505	67732345	ENSG00000248049.6|UBA6-AS1|lncRNA|chr4:67731505:67732345:+	0	+
#Deleted in new
chr4	67732143	67732345	ENSG00000248049.6|UBA6-AS1|lncRNA|chr4:67732143:67732345:+	0	+
#Deleted in new
chr4	67751680	67751714	ENSG00000248049.6|UBA6-AS1|lncRNA|chr4:67751680:67751714:+	0	+
#Deleted in new
chr4	67839015	67839058	ENSG00000153802.11|TMPRSS11D|pc|chr4:67839015:67839058:-	0	-
#Deleted in new
chr4	67839	68500	ENSG00000272602.5|ZNF595|pc|chr4:67839:68500:+	0	+
#Deleted in new
chr4	67924127	67924166	ENSG00000187054.15|TMPRSS11A|pc|chr4:67924127:67924166:-	0	-
#Deleted in new
chr4	6804522	6804606	ENSG00000170871.11|KIAA0232|pc|chr4:6804522:6804606:+	0	+
#Duplicated in new
chr4	680508	680579	ENSG00000215375.6|MYL5|pc|chr4:680508:680579:+	0	+
#Duplicated in new
chr4	680508	680587	ENSG00000215375.6|MYL5|pc|chr4:680508:680587:+	0	+
#Duplicated in new
chr4	68077278	68077421	ENSG00000248049.6|UBA6-AS1|lncRNA|chr4:68077278:68077421:+	0	+
#Partially deleted in new
chr4	68080120	68080645	ENSG00000248049.6|UBA6-AS1|lncRNA|chr4:68080120:68080645:+	0	+
#Partially deleted in new
chr4	68080120	68080952	ENSG00000248049.6|UBA6-AS1|lncRNA|chr4:68080120:68080952:+	0	+
#Partially deleted in new
chr4	68226652	68228072	ENSG00000185873.7|TMPRSS11B|pc|chr4:68226652:68228072:-	0	-
#Partially deleted in new
chr4	68231832	68232416	ENSG00000185873.7|TMPRSS11B|pc|chr4:68231832:68232416:-	0	-
#Deleted in new
chr4	68245550	68245691	ENSG00000185873.7|TMPRSS11B|pc|chr4:68245550:68245691:-	0	-
#Deleted in new
chr4	68245550	68245720	ENSG00000185873.7|TMPRSS11B|pc|chr4:68245550:68245720:-	0	-
#Deleted in new
chr4	687294	687325	ENSG00000169026.12|MFSD7|pc|chr4:687294:687325:-	0	-
#Partially deleted in new
chr4	68901007	68901375	ENSG00000272626.1|AC021146.12|lncRNA|chr4:68901007:68901375:-	0	-
#Deleted in new
chr4	68906874	68906983	ENSG00000272626.1|AC021146.12|lncRNA|chr4:68906874:68906983:-	0	-
#Deleted in new
chr4	68943281	68943378	ENSG00000135220.10|UGT2A3|pc|chr4:68943281:68943378:-	0	-
#Deleted in new
chr4	69051362	69051602	ENSG00000171234.13|UGT2B7|pc|chr4:69051362:69051602:+	0	+
#Deleted in new
chr4	69051475	69051602	ENSG00000171234.13|UGT2B7|pc|chr4:69051475:69051602:+	0	+
#Deleted in new
chr4	69195667	69195771	ENSG00000250696.5|AC111000.4|lncRNA|chr4:69195667:69195771:+	0	+
#Deleted in new
chr4	69201171	69201284	ENSG00000250696.5|AC111000.4|lncRNA|chr4:69201171:69201284:+	0	+
#Deleted in new
chr4	69211065	69211147	ENSG00000250696.5|AC111000.4|lncRNA|chr4:69211065:69211147:+	0	+
#Duplicated in new
chr4	69480164	69480910	ENSG00000156096.13|UGT2B4|pc|chr4:69480164:69480910:-	0	-
#Deleted in new
chr4	69486560	69486573	ENSG00000156096.13|UGT2B4|pc|chr4:69486560:69486573:-	0	-
#Deleted in new
chr4	69525686	69526014	ENSG00000156096.13|UGT2B4|pc|chr4:69525686:69526014:-	0	-
#Deleted in new
chr4	69603541	69603613	ENSG00000173610.12|UGT2A1|pc|chr4:69603541:69603613:-	0	-
#Deleted in new
chr4	69635690	69635822	ENSG00000173610.12|UGT2A1|pc|chr4:69635690:69635822:-	0	-
#Partially deleted in new
chr4	69721161	69727200	ENSG00000173597.8|SULT1B1|pc|chr4:69721161:69727200:-	0	-
#Deleted in new
chr4	69760207	69760250	ENSG00000173597.8|SULT1B1|pc|chr4:69760207:69760250:-	0	-
#Deleted in new
chr4	69760458	69760571	ENSG00000173597.8|SULT1B1|pc|chr4:69760458:69760571:-	0	-
#Deleted in new
chr4	69760458	69760598	ENSG00000173597.8|SULT1B1|pc|chr4:69760458:69760598:-	0	-
#Deleted in new
chr4	69760458	69760712	ENSG00000173597.8|SULT1B1|pc|chr4:69760458:69760712:-	0	-
#Deleted in new
chr4	69773427	69773497	ENSG00000173597.8|SULT1B1|pc|chr4:69773427:69773497:-	0	-
#Deleted in new
chr4	69838447	69838572	ENSG00000284695.1|AC108941.2|pc|chr4:69838447:69838572:-	0	-
#Split in new
chr4	69841211	69842106	ENSG00000109193.11|SULT1E1|pc|chr4:69841211:69842106:-	0	-
#Deleted in new
chr4	69841430	69841546	ENSG00000284695.1|AC108941.2|pc|chr4:69841430:69841546:-	0	-
#Deleted in new
chr4	6995340	6995747	ENSG00000187904.3|AC097382.1|lncRNA|chr4:6995340:6995747:+	0	+
#Deleted in new
chr4	6998774	6998958	ENSG00000187904.3|AC097382.1|lncRNA|chr4:6998774:6998958:+	0	+
#Deleted in new
chr4	69995929	69996025	ENSG00000126549.9|STATH|pc|chr4:69995929:69996025:+	0	+
#Deleted in new
chr4	69995930	69996025	ENSG00000126549.9|STATH|pc|chr4:69995930:69996025:+	0	+
#Deleted in new
chr4	69995965	69996025	ENSG00000126549.9|STATH|pc|chr4:69995965:69996025:+	0	+
#Deleted in new
chr4	69995968	69996025	ENSG00000126549.9|STATH|pc|chr4:69995968:69996025:+	0	+
#Deleted in new
chr4	70000780	70000982	ENSG00000126549.9|STATH|pc|chr4:70000780:70000982:+	0	+
#Deleted in new
chr4	70000862	70000982	ENSG00000126549.9|STATH|pc|chr4:70000862:70000982:+	0	+
#Deleted in new
chr4	70002188	70002453	ENSG00000126549.9|STATH|pc|chr4:70002188:70002453:+	0	+
#Deleted in new
chr4	70002188	70002454	ENSG00000126549.9|STATH|pc|chr4:70002188:70002454:+	0	+
#Deleted in new
chr4	70002188	70002455	ENSG00000126549.9|STATH|pc|chr4:70002188:70002455:+	0	+
#Deleted in new
chr4	70002188	70002570	ENSG00000126549.9|STATH|pc|chr4:70002188:70002570:+	0	+
#Deleted in new
chr4	70028412	70028516	ENSG00000205649.7|HTN3|pc|chr4:70028412:70028516:+	0	+
#Deleted in new
chr4	70028454	70028516	ENSG00000205649.7|HTN3|pc|chr4:70028454:70028516:+	0	+
#Deleted in new
chr4	70028458	70028516	ENSG00000205649.7|HTN3|pc|chr4:70028458:70028516:+	0	+
#Duplicated in new
chr4	70030727	70031408	ENSG00000205649.7|HTN3|pc|chr4:70030727:70031408:+	0	+
#Deleted in new
chr4	70033166	70033253	ENSG00000205649.7|HTN3|pc|chr4:70033166:70033253:+	0	+
#Deleted in new
chr4	70033166	70033546	ENSG00000205649.7|HTN3|pc|chr4:70033166:70033546:+	0	+
#Deleted in new
chr4	70033901	70034412	ENSG00000205649.7|HTN3|pc|chr4:70033901:70034412:+	0	+
#Deleted in new
chr4	70036266	70036527	ENSG00000205649.7|HTN3|pc|chr4:70036266:70036527:+	0	+
#Deleted in new
chr4	70036266	70036529	ENSG00000205649.7|HTN3|pc|chr4:70036266:70036529:+	0	+
#Deleted in new
chr4	70036266	70036538	ENSG00000205649.7|HTN3|pc|chr4:70036266:70036538:+	0	+
#Deleted in new
chr4	70055497	70055602	ENSG00000126550.8|HTN1|pc|chr4:70055497:70055602:+	0	+
#Deleted in new
chr4	70055497	70055844	ENSG00000126550.8|HTN1|pc|chr4:70055497:70055844:+	0	+
#Deleted in new
chr4	70055497	70055947	ENSG00000126550.8|HTN1|pc|chr4:70055497:70055947:+	0	+
#Partially deleted in new
chr4	70055497	70058845	ENSG00000126550.8|HTN1|pc|chr4:70055497:70058845:+	0	+
#Deleted in new
chr4	70133615	70133660	ENSG00000187533.13|PRR27|pc|chr4:70133615:70133660:+	0	+
#Deleted in new
chr4	70152075	70152137	ENSG00000187533.13|PRR27|pc|chr4:70152075:70152137:+	0	+
#Split in new
chr4	70162694	70164935	ENSG00000187533.13|PRR27|pc|chr4:70162694:70164935:+	0	+
#Split in new
chr4	70162694	70164939	ENSG00000187533.13|PRR27|pc|chr4:70162694:70164939:+	0	+
#Deleted in new
chr4	70166645	70166687	ENSG00000187533.13|PRR27|pc|chr4:70166645:70166687:+	0	+
#Deleted in new
chr4	70176742	70176799	ENSG00000187533.13|PRR27|pc|chr4:70176742:70176799:+	0	+
#Deleted in new
chr4	70200101	70200149	ENSG00000109205.16|ODAM|pc|chr4:70200101:70200149:+	0	+
#Deleted in new
chr4	70247817	70247850	ENSG00000171209.3|CSN3|pc|chr4:70247817:70247850:+	0	+
#Deleted in new
chr4	7035170	7035274	ENSG00000245748.1|AC097382.2|lncRNA|chr4:7035170:7035274:-	0	-
#Deleted in new
chr4	70370092	70370217	ENSG00000171201.10|SMR3B|pc|chr4:70370092:70370217:+	0	+
#Deleted in new
chr4	70430491	70430687	ENSG00000171195.10|MUC7|pc|chr4:70430491:70430687:+	0	+
#Partially deleted in new
chr4	7045658	7046231	ENSG00000245748.1|AC097382.2|lncRNA|chr4:7045658:7046231:-	0	-
#Deleted in new
chr4	70471957	70472092	ENSG00000171195.10|MUC7|pc|chr4:70471957:70472092:+	0	+
#Deleted in new
chr4	70472012	70472291	ENSG00000171195.10|MUC7|pc|chr4:70472012:70472291:+	0	+
#Deleted in new
chr4	70472116	70472291	ENSG00000171195.10|MUC7|pc|chr4:70472116:70472291:+	0	+
#Deleted in new
chr4	70472196	70472291	ENSG00000171195.10|MUC7|pc|chr4:70472196:70472291:+	0	+
#Deleted in new
chr4	70472214	70472291	ENSG00000171195.10|MUC7|pc|chr4:70472214:70472291:+	0	+
#Deleted in new
chr4	70474006	70474018	ENSG00000171195.10|MUC7|pc|chr4:70474006:70474018:+	0	+
#Deleted in new
chr4	70474006	70474075	ENSG00000171195.10|MUC7|pc|chr4:70474006:70474075:+	0	+
#Deleted in new
chr4	70480798	70481025	ENSG00000171195.10|MUC7|pc|chr4:70480798:70481025:+	0	+
#Deleted in new
chr4	70480798	70481152	ENSG00000171195.10|MUC7|pc|chr4:70480798:70481152:+	0	+
#Partially deleted in new
chr4	70480798	70481278	ENSG00000171195.10|MUC7|pc|chr4:70480798:70481278:+	0	+
#Partially deleted in new
chr4	70480798	70482996	ENSG00000171195.10|MUC7|pc|chr4:70480798:70482996:+	0	+
#Partially deleted in new
chr4	70480798	70482997	ENSG00000171195.10|MUC7|pc|chr4:70480798:70482997:+	0	+
#Deleted in new
chr4	70601903	70601907	ENSG00000178522.14|AMBN|pc|chr4:70601903:70601907:+	0	+
#Deleted in new
chr4	70654613	70654768	ENSG00000132464.11|ENAM|pc|chr4:70654613:70654768:+	0	+
#Deleted in new
chr4	70663380	70663534	ENSG00000132464.11|ENAM|pc|chr4:70663380:70663534:+	0	+
#Deleted in new
chr4	70664101	70664149	ENSG00000132465.10|JCHAIN|pc|chr4:70664101:70664149:-	0	-
#Deleted in new
chr4	70665859	70665886	ENSG00000132465.10|JCHAIN|pc|chr4:70665859:70665886:-	0	-
#Deleted in new
chr4	70686606	70686816	ENSG00000132464.11|ENAM|pc|chr4:70686606:70686816:+	0	+
#Partially deleted in new
chr4	70799404	70799875	ENSG00000018189.12|RUFY3|pc|chr4:70799404:70799875:+	0	+
#Deleted in new
chr4	70942822	70942882	ENSG00000173542.8|MOB1B|pc|chr4:70942822:70942882:+	0	+
#Deleted in new
chr4	7097322	7097379	ENSG00000245468.3|LINC02447|lncRNA|chr4:7097322:7097379:-	0	-
#Deleted in new
chr4	7098067	7099454	ENSG00000245468.3|LINC02447|lncRNA|chr4:7098067:7099454:-	0	-
#Deleted in new
chr4	70992537	70992591	ENSG00000156136.9|DCK|pc|chr4:70992537:70992591:+	0	+
#Deleted in new
chr4	7101239	7103385	ENSG00000245468.3|LINC02447|lncRNA|chr4:7101239:7103385:-	0	-
#Deleted in new
chr4	71028622	71028719	ENSG00000156136.9|DCK|pc|chr4:71028622:71028719:+	0	+
#Deleted in new
chr4	7103267	7103329	ENSG00000245468.3|LINC02447|lncRNA|chr4:7103267:7103329:-	0	-
#Deleted in new
chr4	7103267	7103380	ENSG00000245468.3|LINC02447|lncRNA|chr4:7103267:7103380:-	0	-
#Deleted in new
chr4	71803925	71804041	ENSG00000145321.12|GC|pc|chr4:71803925:71804041:-	0	-
#Deleted in new
chr4	71821304	71821500	ENSG00000248567.1|AC068721.1|lncRNA|chr4:71821304:71821500:-	0	-
#Deleted in new
chr4	71822831	71822917	ENSG00000248567.1|AC068721.1|lncRNA|chr4:71822831:71822917:-	0	-
#Deleted in new
chr4	71823086	71823243	ENSG00000248567.1|AC068721.1|lncRNA|chr4:71823086:71823243:-	0	-
#Deleted in new
chr4	71823836	71823980	ENSG00000248567.1|AC068721.1|lncRNA|chr4:71823836:71823980:-	0	-
#Deleted in new
chr4	72039177	72039413	ENSG00000056291.17|NPFFR2|pc|chr4:72039177:72039413:+	0	+
#Deleted in new
chr4	72039373	72039413	ENSG00000056291.17|NPFFR2|pc|chr4:72039373:72039413:+	0	+
#Deleted in new
chr4	72068912	72069023	ENSG00000056291.17|NPFFR2|pc|chr4:72068912:72069023:+	0	+
#Deleted in new
chr4	722274	722437	ENSG00000248416.1|AC107464.2|lncRNA|chr4:722274:722437:-	0	-
#Deleted in new
chr4	72330486	72330751	ENSG00000250877.1|AC095056.1|lncRNA|chr4:72330486:72330751:+	0	+
#Deleted in new
chr4	723628	724034	ENSG00000248416.1|AC107464.2|lncRNA|chr4:723628:724034:-	0	-
#Deleted in new
chr4	72441675	72442216	ENSG00000156140.9|ADAMTS3|pc|chr4:72441675:72442216:-	0	-
#Deleted in new
chr4	725106	725229	ENSG00000185619.18|PCGF3|pc|chr4:725106:725229:+	0	+
#Partially deleted in new
chr4	73052361	73058287	ENSG00000163626.16|COX18|pc|chr4:73052361:73058287:-	0	-
#Partially deleted in new
chr4	73056079	73058287	ENSG00000163626.16|COX18|pc|chr4:73056079:73058287:-	0	-
#Deleted in new
chr4	73080720	73080810	ENSG00000132466.18|ANKRD17|pc|chr4:73080720:73080810:-	0	-
#Deleted in new
chr4	73100860	73101173	ENSG00000132466.18|ANKRD17|pc|chr4:73100860:73101173:-	0	-
#Deleted in new
chr4	73104002	73104080	ENSG00000132466.18|ANKRD17|pc|chr4:73104002:73104080:-	0	-
#Deleted in new
chr4	73113083	73113311	ENSG00000132466.18|ANKRD17|pc|chr4:73113083:73113311:-	0	-
#Deleted in new
chr4	73168928	73169090	ENSG00000132466.18|ANKRD17|pc|chr4:73168928:73169090:-	0	-
#Deleted in new
chr4	732399	732498	ENSG00000185619.18|PCGF3|pc|chr4:732399:732498:+	0	+
#Deleted in new
chr4	732443	732498	ENSG00000185619.18|PCGF3|pc|chr4:732443:732498:+	0	+
#Deleted in new
chr4	73269823	73269953	ENSG00000250220.1|AC053527.1|lncRNA|chr4:73269823:73269953:+	0	+
#Deleted in new
chr4	73307075	73307181	ENSG00000250220.1|AC053527.1|lncRNA|chr4:73307075:73307181:+	0	+
#Deleted in new
chr4	73317826	73317953	ENSG00000250220.1|AC053527.1|lncRNA|chr4:73317826:73317953:+	0	+
#Deleted in new
chr4	73434469	73434610	ENSG00000081051.7|AFP|pc|chr4:73434469:73434610:+	0	+
#Deleted in new
chr4	734789	734842	ENSG00000185619.18|PCGF3|pc|chr4:734789:734842:+	0	+
#Partially deleted in new
chr4	73604078	73604587	ENSG00000169435.13|RASSF6|pc|chr4:73604078:73604587:-	0	-
#Deleted in new
chr4	73710301	73710395	ENSG00000228277.1|AC112518.1|lncRNA|chr4:73710301:73710395:+	0	+
#Deleted in new
chr4	73713336	73713455	ENSG00000228277.1|AC112518.1|lncRNA|chr4:73713336:73713455:+	0	+
#Deleted in new
chr4	73714165	73714527	ENSG00000228277.1|AC112518.1|lncRNA|chr4:73714165:73714527:+	0	+
#Deleted in new
chr4	73740505	73740722	ENSG00000169429.10|CXCL8|pc|chr4:73740505:73740722:+	0	+
#Deleted in new
chr4	73740540	73740722	ENSG00000169429.10|CXCL8|pc|chr4:73740540:73740722:+	0	+
#Deleted in new
chr4	73740568	73740722	ENSG00000169429.10|CXCL8|pc|chr4:73740568:73740722:+	0	+
#Deleted in new
chr4	73741541	73741677	ENSG00000169429.10|CXCL8|pc|chr4:73741541:73741677:+	0	+
#Deleted in new
chr4	73741541	73741986	ENSG00000169429.10|CXCL8|pc|chr4:73741541:73741986:+	0	+
#Deleted in new
chr4	73741948	73742032	ENSG00000169429.10|CXCL8|pc|chr4:73741948:73742032:+	0	+
#Deleted in new
chr4	73741948	73742330	ENSG00000169429.10|CXCL8|pc|chr4:73741948:73742330:+	0	+
#Deleted in new
chr4	73742448	73743716	ENSG00000169429.10|CXCL8|pc|chr4:73742448:73743716:+	0	+
#Deleted in new
chr4	7381897	7381992	ENSG00000184985.16|SORCS2|pc|chr4:7381897:7381992:+	0	+
#Duplicated in new
chr4	73995641	73997655	ENSG00000163735.6|CXCL5|pc|chr4:73995641:73997655:-	0	-
#Duplicated in new
chr4	74037655	74038176	ENSG00000163734.4|CXCL3|pc|chr4:74037655:74038176:-	0	-
#Partially deleted in new
chr4	74114173	74114383	ENSG00000163738.18|MTHFD2L|pc|chr4:74114173:74114383:+	0	+
#Partially deleted in new
chr4	74125437	74125517	ENSG00000163738.18|MTHFD2L|pc|chr4:74125437:74125517:+	0	+
#Partially deleted in new
chr4	74125439	74125517	ENSG00000163738.18|MTHFD2L|pc|chr4:74125439:74125517:+	0	+
#Deleted in new
chr4	74143392	74143467	ENSG00000163738.18|MTHFD2L|pc|chr4:74143392:74143467:+	0	+
#Deleted in new
chr4	74161779	74162106	ENSG00000163738.18|MTHFD2L|pc|chr4:74161779:74162106:+	0	+
#Deleted in new
chr4	74180686	74180866	ENSG00000163738.18|MTHFD2L|pc|chr4:74180686:74180866:+	0	+
#Deleted in new
chr4	74181685	74181750	ENSG00000163738.18|MTHFD2L|pc|chr4:74181685:74181750:+	0	+
#Deleted in new
chr4	74181685	74181791	ENSG00000163738.18|MTHFD2L|pc|chr4:74181685:74181791:+	0	+
#Deleted in new
chr4	74182726	74183931	ENSG00000163738.18|MTHFD2L|pc|chr4:74182726:74183931:+	0	+
#Deleted in new
chr4	74194039	74195838	ENSG00000163738.18|MTHFD2L|pc|chr4:74194039:74195838:+	0	+
#Deleted in new
chr4	74241566	74242197	ENSG00000163738.18|MTHFD2L|pc|chr4:74241566:74242197:+	0	+
#Deleted in new
chr4	74241566	74242210	ENSG00000163738.18|MTHFD2L|pc|chr4:74241566:74242210:+	0	+
#Deleted in new
chr4	74288300	74288465	ENSG00000163738.18|MTHFD2L|pc|chr4:74288300:74288465:+	0	+
#Partially deleted in new
chr4	74381013	74382013	ENSG00000124882.3|EREG|pc|chr4:74381013:74382013:+	0	+
#Deleted in new
chr4	743864	743952	ENSG00000185619.18|PCGF3|pc|chr4:743864:743952:+	0	+
#Deleted in new
chr4	74440278	74440457	ENSG00000250532.1|AC021180.1|lncRNA|chr4:74440278:74440457:-	0	-
#Deleted in new
chr4	74584014	74584094	ENSG00000249942.1|AC239584.1|lncRNA|chr4:74584014:74584094:-	0	-
#Deleted in new
chr4	74585012	74585105	ENSG00000249942.1|AC239584.1|lncRNA|chr4:74585012:74585105:-	0	-
#Deleted in new
chr4	74588331	74588413	ENSG00000249942.1|AC239584.1|lncRNA|chr4:74588331:74588413:-	0	-
#Deleted in new
chr4	74589363	74589481	ENSG00000249942.1|AC239584.1|lncRNA|chr4:74589363:74589481:-	0	-
#Deleted in new
chr4	75084588	75084717	ENSG00000260265.1|LINC02562|lncRNA|chr4:75084588:75084717:-	0	-
#Deleted in new
chr4	75269067	75269495	ENSG00000251185.1|AC025244.1|lncRNA|chr4:75269067:75269495:-	0	-
#Deleted in new
chr4	75341278	75341312	ENSG00000251454.1|AC025244.2|lncRNA|chr4:75341278:75341312:-	0	-
#Deleted in new
chr4	75341461	75341637	ENSG00000251454.1|AC025244.2|lncRNA|chr4:75341461:75341637:-	0	-
#Deleted in new
chr4	75354075	75354115	ENSG00000251383.1|LINC02483|lncRNA|chr4:75354075:75354115:+	0	+
#Deleted in new
chr4	75355317	75355387	ENSG00000251383.1|LINC02483|lncRNA|chr4:75355317:75355387:+	0	+
#Deleted in new
chr4	75358969	75359024	ENSG00000251454.1|AC025244.2|lncRNA|chr4:75358969:75359024:-	0	-
#Deleted in new
chr4	75361141	75361182	ENSG00000251185.1|AC025244.1|lncRNA|chr4:75361141:75361182:-	0	-
#Deleted in new
chr4	75361206	75361347	ENSG00000248646.1|AC096759.1|lncRNA|chr4:75361206:75361347:-	0	-
#Deleted in new
chr4	75361723	75362566	ENSG00000251383.1|LINC02483|lncRNA|chr4:75361723:75362566:+	0	+
#Partially deleted in new
chr4	75401194	75401292	ENSG00000250735.5|AC096759.2|lncRNA|chr4:75401194:75401292:+	0	+
#Deleted in new
chr4	75401217	75401292	ENSG00000250735.5|AC096759.2|lncRNA|chr4:75401217:75401292:+	0	+
#Deleted in new
chr4	75544327	75544440	ENSG00000174796.12|THAP6|pc|chr4:75544327:75544440:+	0	+
#Deleted in new
chr4	75544327	75544662	ENSG00000174796.12|THAP6|pc|chr4:75544327:75544662:+	0	+
#Deleted in new
chr4	75549604	75549720	ENSG00000174796.12|THAP6|pc|chr4:75549604:75549720:+	0	+
#Deleted in new
chr4	75550335	75550473	ENSG00000174796.12|THAP6|pc|chr4:75550335:75550473:+	0	+
#Partially deleted in new
chr4	75563234	75563322	ENSG00000174792.10|C4orf26|pc|chr4:75563234:75563322:+	0	+
#Deleted in new
chr4	75662212	75662525	ENSG00000138757.14|G3BP2|pc|chr4:75662212:75662525:-	0	-
#Deleted in new
chr4	75662381	75662525	ENSG00000138757.14|G3BP2|pc|chr4:75662381:75662525:-	0	-
#Deleted in new
chr4	75670361	75670427	ENSG00000138757.14|G3BP2|pc|chr4:75670361:75670427:-	0	-
#Deleted in new
chr4	75694797	75694929	ENSG00000138757.14|G3BP2|pc|chr4:75694797:75694929:-	0	-
#Deleted in new
chr4	757021	757740	ENSG00000272588.1|AC139887.4|lncRNA|chr4:757021:757740:-	0	-
#Deleted in new
chr4	75830750	75832705	ENSG00000229717.2|AC110615.1|lncRNA|chr4:75830750:75832705:+	0	+
#Deleted in new
chr4	75881330	75881985	ENSG00000156194.17|PPEF2|pc|chr4:75881330:75881985:-	0	-
#Deleted in new
chr4	75889102	75889204	ENSG00000156194.17|PPEF2|pc|chr4:75889102:75889204:-	0	-
#Deleted in new
chr4	75916437	75916549	ENSG00000138744.14|NAAA|pc|chr4:75916437:75916549:-	0	-
#Deleted in new
chr4	75917466	75917773	ENSG00000138744.14|NAAA|pc|chr4:75917466:75917773:-	0	-
#Deleted in new
chr4	75980789	75980965	ENSG00000245928.2|AC112719.2|lncRNA|chr4:75980789:75980965:+	0	+
#Partially deleted in new
chr4	75996105	75996744	ENSG00000245928.2|AC112719.2|lncRNA|chr4:75996105:75996744:+	0	+
#Deleted in new
chr4	76057989	76058070	ENSG00000156219.16|ART3|pc|chr4:76057989:76058070:+	0	+
#Deleted in new
chr4	76100794	76100824	ENSG00000156219.16|ART3|pc|chr4:76100794:76100824:+	0	+
#Partially deleted in new
chr4	76107215	76107793	ENSG00000156219.16|ART3|pc|chr4:76107215:76107793:+	0	+
#Deleted in new
chr4	76111906	76111994	ENSG00000156219.16|ART3|pc|chr4:76111906:76111994:+	0	+
#Partially deleted in new
chr4	76172699	76175452	ENSG00000138760.9|SCARB2|pc|chr4:76172699:76175452:-	0	-
#Partially deleted in new
chr4	76172727	76174313	ENSG00000138760.9|SCARB2|pc|chr4:76172727:76174313:-	0	-
#Partially deleted in new
chr4	76173551	76174313	ENSG00000138760.9|SCARB2|pc|chr4:76173551:76174313:-	0	-
#Partially deleted in new
chr4	76176436	76177133	ENSG00000138760.9|SCARB2|pc|chr4:76176436:76177133:-	0	-
#Deleted in new
chr4	76180210	76180354	ENSG00000138760.9|SCARB2|pc|chr4:76180210:76180354:-	0	-
#Deleted in new
chr4	76184656	76184780	ENSG00000138760.9|SCARB2|pc|chr4:76184656:76184780:-	0	-
#Partially deleted in new
chr4	76191849	76195864	ENSG00000138760.9|SCARB2|pc|chr4:76191849:76195864:-	0	-
#Deleted in new
chr4	76217578	76217688	ENSG00000189157.13|FAM47E|pc|chr4:76217578:76217688:+	0	+
#Deleted in new
chr4	76234302	76234536	ENSG00000138760.9|SCARB2|pc|chr4:76234302:76234536:-	0	-
#Deleted in new
chr4	76236268	76236652	ENSG00000189157.13|FAM47E|pc|chr4:76236268:76236652:+	0	+
#Deleted in new
chr4	762386	762839	ENSG00000249592.5|AC139887.2|lncRNA|chr4:762386:762839:-	0	-
#Deleted in new
chr4	76289901	76290060	ENSG00000272414.5|FAM47E-STBD1|pc|chr4:76289901:76290060:+	0	+
#Deleted in new
chr4	76407221	76407305	ENSG00000163749.17|CCDC158|pc|chr4:76407221:76407305:-	0	-
#Deleted in new
chr4	76407221	76407323	ENSG00000163749.17|CCDC158|pc|chr4:76407221:76407323:-	0	-
#Deleted in new
chr4	76414260	76414364	ENSG00000163749.17|CCDC158|pc|chr4:76414260:76414364:-	0	-
#Deleted in new
chr4	764486	764609	ENSG00000233799.1|AC139887.1|lncRNA|chr4:764486:764609:-	0	-
#Deleted in new
chr4	76628865	76628983	ENSG00000138771.14|SHROOM3|pc|chr4:76628865:76628983:+	0	+
#Deleted in new
chr4	76638837	76638881	ENSG00000231335.1|AC121158.1|lncRNA|chr4:76638837:76638881:+	0	+
#Deleted in new
chr4	76644274	76644368	ENSG00000231335.1|AC121158.1|lncRNA|chr4:76644274:76644368:+	0	+
#Deleted in new
chr4	76801893	76801964	ENSG00000224218.1|AC107072.1|lncRNA|chr4:76801893:76801964:-	0	-
#Deleted in new
chr4	76973009	76973070	ENSG00000138758.11|SEPT11|pc|chr4:76973009:76973070:+	0	+
#Partially deleted in new
chr4	77064712	77065080	ENSG00000118816.9|CCNI|pc|chr4:77064712:77065080:-	0	-
#Deleted in new
chr4	77178955	77179066	ENSG00000138764.14|CCNG2|pc|chr4:77178955:77179066:+	0	+
#Deleted in new
chr4	77187763	77187807	ENSG00000138764.14|CCNG2|pc|chr4:77187763:77187807:+	0	+
#Deleted in new
chr4	77192210	77192267	ENSG00000138764.14|CCNG2|pc|chr4:77192210:77192267:+	0	+
#Deleted in new
chr4	7735399	7735405	ENSG00000184985.16|SORCS2|pc|chr4:7735399:7735405:+	0	+
#Deleted in new
chr4	77384636	77384767	ENSG00000138764.14|CCNG2|pc|chr4:77384636:77384767:+	0	+
#Deleted in new
chr4	77394490	77394737	ENSG00000249036.1|AC092674.1|lncRNA|chr4:77394490:77394737:-	0	-
#Deleted in new
chr4	77399592	77399794	ENSG00000249036.1|AC092674.1|lncRNA|chr4:77399592:77399794:-	0	-
#Deleted in new
chr4	77431725	77431870	ENSG00000138764.14|CCNG2|pc|chr4:77431725:77431870:+	0	+
#Deleted in new
chr4	77432239	77432380	ENSG00000138764.14|CCNG2|pc|chr4:77432239:77432380:+	0	+
#Deleted in new
chr4	77432239	77432433	ENSG00000138764.14|CCNG2|pc|chr4:77432239:77432433:+	0	+
#Deleted in new
chr4	77433206	77433388	ENSG00000138764.14|CCNG2|pc|chr4:77433206:77433388:+	0	+
#Deleted in new
chr4	77494164	77494286	ENSG00000249036.1|AC092674.1|lncRNA|chr4:77494164:77494286:-	0	-
#Deleted in new
chr4	7754089	7754159	ENSG00000272620.1|AFAP1-AS1|lncRNA|chr4:7754089:7754159:+	0	+
#Deleted in new
chr4	7788606	7789020	ENSG00000196526.10|AFAP1|pc|chr4:7788606:7789020:-	0	-
#Deleted in new
chr4	77906945	77907210	ENSG00000169288.17|MRPL1|pc|chr4:77906945:77907210:+	0	+
#Deleted in new
chr4	77908324	77908375	ENSG00000169288.17|MRPL1|pc|chr4:77908324:77908375:+	0	+
#Deleted in new
chr4	7798899	7799160	ENSG00000196526.10|AFAP1|pc|chr4:7798899:7799160:-	0	-
#Deleted in new
chr4	780148	780688	ENSG00000249592.5|AC139887.2|lncRNA|chr4:780148:780688:-	0	-
#Deleted in new
chr4	780245	780717	ENSG00000249592.5|AC139887.2|lncRNA|chr4:780245:780717:-	0	-
#Deleted in new
chr4	781771	781830	ENSG00000249592.5|AC139887.2|lncRNA|chr4:781771:781830:-	0	-
#Deleted in new
chr4	781771	781849	ENSG00000249592.5|AC139887.2|lncRNA|chr4:781771:781849:-	0	-
#Deleted in new
chr4	78571032	78571173	ENSG00000138772.12|ANXA3|pc|chr4:78571032:78571173:+	0	+
#Partially deleted in new
chr4	78601863	78604399	ENSG00000138772.12|ANXA3|pc|chr4:78601863:78604399:+	0	+
#Deleted in new
chr4	7861984	7862311	ENSG00000196526.10|AFAP1|pc|chr4:7861984:7862311:-	0	-
#Deleted in new
chr4	78648392	78648475	ENSG00000251442.5|LINC01094|lncRNA|chr4:78648392:78648475:+	0	+
#Deleted in new
chr4	78649600	78649709	ENSG00000251442.5|LINC01094|lncRNA|chr4:78649600:78649709:+	0	+
#Deleted in new
chr4	78680760	78680895	ENSG00000251442.5|LINC01094|lncRNA|chr4:78680760:78680895:+	0	+
#Partially deleted in new
chr4	78860035	78860079	ENSG00000138756.17|BMP2K|pc|chr4:78860035:78860079:+	0	+
#Deleted in new
chr4	78888060	78888148	ENSG00000163291.14|PAQR3|pc|chr4:78888060:78888148:-	0	-
#Deleted in new
chr4	78922140	78922421	ENSG00000163291.14|PAQR3|pc|chr4:78922140:78922421:-	0	-
#Deleted in new
chr4	78922828	78922983	ENSG00000163291.14|PAQR3|pc|chr4:78922828:78922983:-	0	-
#Deleted in new
chr4	78971747	78971876	ENSG00000249307.5|LINC01088|lncRNA|chr4:78971747:78971876:+	0	+
#Deleted in new
chr4	78972999	78973052	ENSG00000249307.5|LINC01088|lncRNA|chr4:78972999:78973052:+	0	+
#Deleted in new
chr4	79086095	79086262	ENSG00000249307.5|LINC01088|lncRNA|chr4:79086095:79086262:+	0	+
#Deleted in new
chr4	79195833	79195932	ENSG00000249307.5|LINC01088|lncRNA|chr4:79195833:79195932:+	0	+
#Deleted in new
chr4	79195835	79195932	ENSG00000249307.5|LINC01088|lncRNA|chr4:79195835:79195932:+	0	+
#Deleted in new
chr4	79195836	79195932	ENSG00000249307.5|LINC01088|lncRNA|chr4:79195836:79195932:+	0	+
#Deleted in new
chr4	79197540	79197644	ENSG00000249307.5|LINC01088|lncRNA|chr4:79197540:79197644:+	0	+
#Deleted in new
chr4	79225693	79226270	ENSG00000156269.4|NAA11|pc|chr4:79225693:79226270:-	0	-
#Deleted in new
chr4	79225979	79226270	ENSG00000156269.4|NAA11|pc|chr4:79225979:79226270:-	0	-
#Deleted in new
chr4	79227211	79227886	ENSG00000249307.5|LINC01088|lncRNA|chr4:79227211:79227886:+	0	+
#Deleted in new
chr4	79227211	79227956	ENSG00000249307.5|LINC01088|lncRNA|chr4:79227211:79227956:+	0	+
#Deleted in new
chr4	79244683	79245532	ENSG00000249307.5|LINC01088|lncRNA|chr4:79244683:79245532:+	0	+
#Deleted in new
chr4	79258780	79259039	ENSG00000249307.5|LINC01088|lncRNA|chr4:79258780:79259039:+	0	+
#Deleted in new
chr4	79294004	79294114	ENSG00000156269.4|NAA11|pc|chr4:79294004:79294114:-	0	-
#Deleted in new
chr4	79299000	79299565	ENSG00000249307.5|LINC01088|lncRNA|chr4:79299000:79299565:+	0	+
#Deleted in new
chr4	79305122	79305182	ENSG00000249307.5|LINC01088|lncRNA|chr4:79305122:79305182:+	0	+
#Deleted in new
chr4	79492415	79492623	ENSG00000250334.5|LINC00989|lncRNA|chr4:79492415:79492623:+	0	+
#Deleted in new
chr4	79492592	79492774	ENSG00000250334.5|LINC00989|lncRNA|chr4:79492592:79492774:+	0	+
#Deleted in new
chr4	79493151	79493585	ENSG00000250334.5|LINC00989|lncRNA|chr4:79493151:79493585:+	0	+
#Deleted in new
chr4	79667988	79668127	ENSG00000248408.1|LINC02469|lncRNA|chr4:79667988:79668127:+	0	+
#Deleted in new
chr4	79689987	79690076	ENSG00000248408.1|LINC02469|lncRNA|chr4:79689987:79690076:+	0	+
#Deleted in new
chr4	79696412	79696837	ENSG00000248408.1|LINC02469|lncRNA|chr4:79696412:79696837:+	0	+
#Deleted in new
chr4	79827470	79827603	ENSG00000251321.1|PCAT4|lncRNA|chr4:79827470:79827603:+	0	+
#Deleted in new
chr4	79827534	79827603	ENSG00000251321.1|PCAT4|lncRNA|chr4:79827534:79827603:+	0	+
#Deleted in new
chr4	79861289	79861437	ENSG00000251321.1|PCAT4|lncRNA|chr4:79861289:79861437:+	0	+
#Deleted in new
chr4	79877614	79877770	ENSG00000251321.1|PCAT4|lncRNA|chr4:79877614:79877770:+	0	+
#Deleted in new
chr4	80024636	80024755	ENSG00000163297.16|ANTXR2|pc|chr4:80024636:80024755:-	0	-
#Deleted in new
chr4	80104462	80104537	ENSG00000163297.16|ANTXR2|pc|chr4:80104462:80104537:-	0	-
#Deleted in new
chr4	80121147	80121277	ENSG00000163297.16|ANTXR2|pc|chr4:80121147:80121277:-	0	-
#Deleted in new
chr4	80125385	80125454	ENSG00000163297.16|ANTXR2|pc|chr4:80125385:80125454:-	0	-
#Partially deleted in new
chr4	8022664	8023126	ENSG00000273267.1|AC097381.3|lncRNA|chr4:8022664:8023126:+	0	+
#Deleted in new
chr4	80301282	80301329	ENSG00000138675.16|FGF5|pc|chr4:80301282:80301329:+	0	+
#Deleted in new
chr4	80336547	80336680	ENSG00000138675.16|FGF5|pc|chr4:80336547:80336680:+	0	+
#Deleted in new
chr4	8041349	8041436	ENSG00000163995.19|ABLIM2|pc|chr4:8041349:8041436:-	0	-
#Deleted in new
chr4	80420213	80420323	ENSG00000197826.11|C4orf22|pc|chr4:80420213:80420323:+	0	+
#Deleted in new
chr4	804755	804908	ENSG00000168993.14|CPLX1|pc|chr4:804755:804908:-	0	-
#Deleted in new
chr4	80639717	80639835	ENSG00000197826.11|C4orf22|pc|chr4:80639717:80639835:+	0	+
#Partially deleted in new
chr4	8066527	8066721	ENSG00000251460.1|AC097381.2|lncRNA|chr4:8066527:8066721:+	0	+
#Deleted in new
chr4	80790374	80790507	ENSG00000197826.11|C4orf22|pc|chr4:80790374:80790507:+	0	+
#Deleted in new
chr4	80870320	80873074	ENSG00000197826.11|C4orf22|pc|chr4:80870320:80873074:+	0	+
#Deleted in new
chr4	81154101	81154144	ENSG00000138669.9|PRKG2|pc|chr4:81154101:81154144:-	0	-
#Deleted in new
chr4	81154101	81154157	ENSG00000138669.9|PRKG2|pc|chr4:81154101:81154157:-	0	-
#Deleted in new
chr4	81154101	81154253	ENSG00000138669.9|PRKG2|pc|chr4:81154101:81154253:-	0	-
#Deleted in new
chr4	81802806	81802889	ENSG00000138670.17|RASGEF1B|pc|chr4:81802806:81802889:-	0	-
#Deleted in new
chr4	8182071	8182210	ENSG00000125089.16|SH3TC1|pc|chr4:8182071:8182210:+	0	+
#Deleted in new
chr4	8182074	8182210	ENSG00000125089.16|SH3TC1|pc|chr4:8182074:8182210:+	0	+
#Deleted in new
chr4	81894580	81894624	ENSG00000138670.17|RASGEF1B|pc|chr4:81894580:81894624:-	0	-
#Partially deleted in new
chr4	8204782	8205053	ENSG00000125089.16|SH3TC1|pc|chr4:8204782:8205053:+	0	+
#Partially deleted in new
chr4	8212700	8213226	ENSG00000125089.16|SH3TC1|pc|chr4:8212700:8213226:+	0	+
#Deleted in new
chr4	8215171	8215242	ENSG00000125089.16|SH3TC1|pc|chr4:8215171:8215242:+	0	+
#Deleted in new
chr4	8224595	8224628	ENSG00000125089.16|SH3TC1|pc|chr4:8224595:8224628:+	0	+
#Deleted in new
chr4	8229150	8229256	ENSG00000125089.16|SH3TC1|pc|chr4:8229150:8229256:+	0	+
#Deleted in new
chr4	8229175	8229256	ENSG00000125089.16|SH3TC1|pc|chr4:8229175:8229256:+	0	+
#Deleted in new
chr4	8229217	8229256	ENSG00000125089.16|SH3TC1|pc|chr4:8229217:8229256:+	0	+
#Deleted in new
chr4	8229223	8229256	ENSG00000125089.16|SH3TC1|pc|chr4:8229223:8229256:+	0	+
#Deleted in new
chr4	82383733	82384027	ENSG00000272677.1|AC124016.1|lncRNA|chr4:82383733:82384027:+	0	+
#Deleted in new
chr4	82509669	82509787	ENSG00000249242.7|TMEM150C|pc|chr4:82509669:82509787:-	0	-
#Deleted in new
chr4	82613112	82613384	ENSG00000231782.6|LINC00575|lncRNA|chr4:82613112:82613384:-	0	-
#Partially deleted in new
chr4	82843684	82844509	ENSG00000138674.16|SEC31A|pc|chr4:82843684:82844509:-	0	-
#Partially deleted in new
chr4	82871367	82871950	ENSG00000138674.16|SEC31A|pc|chr4:82871367:82871950:-	0	-
#Deleted in new
chr4	82877488	82877801	ENSG00000138674.16|SEC31A|pc|chr4:82877488:82877801:-	0	-
#Deleted in new
chr4	82877556	82878030	ENSG00000138674.16|SEC31A|pc|chr4:82877556:82878030:-	0	-
#Partially deleted in new
chr4	82880661	82880711	ENSG00000138674.16|SEC31A|pc|chr4:82880661:82880711:-	0	-
#Partially deleted in new
chr4	82893008	82894847	ENSG00000251022.6|THAP9-AS1|lncRNA|chr4:82893008:82894847:-	0	-
#Partially deleted in new
chr4	82893544	82895774	ENSG00000251022.6|THAP9-AS1|lncRNA|chr4:82893544:82895774:-	0	-
#Deleted in new
chr4	82894249	82894847	ENSG00000251022.6|THAP9-AS1|lncRNA|chr4:82894249:82894847:-	0	-
#Deleted in new
chr4	82894794	82894847	ENSG00000251022.6|THAP9-AS1|lncRNA|chr4:82894794:82894847:-	0	-
#Deleted in new
chr4	82901075	82901173	ENSG00000168152.12|THAP9|pc|chr4:82901075:82901173:+	0	+
#Deleted in new
chr4	82901082	82901166	ENSG00000138674.16|SEC31A|pc|chr4:82901082:82901166:-	0	-
#Deleted in new
chr4	82903406	82903573	ENSG00000168152.12|THAP9|pc|chr4:82903406:82903573:+	0	+
#Deleted in new
chr4	82904735	82904824	ENSG00000168152.12|THAP9|pc|chr4:82904735:82904824:+	0	+
#Deleted in new
chr4	82904735	82904931	ENSG00000168152.12|THAP9|pc|chr4:82904735:82904931:+	0	+
#Deleted in new
chr4	82904735	82904941	ENSG00000168152.12|THAP9|pc|chr4:82904735:82904941:+	0	+
#Deleted in new
chr4	82905860	82905926	ENSG00000168152.12|THAP9|pc|chr4:82905860:82905926:+	0	+
#Deleted in new
chr4	82906323	82906627	ENSG00000168152.12|THAP9|pc|chr4:82906323:82906627:+	0	+
#Deleted in new
chr4	82906425	82906627	ENSG00000168152.12|THAP9|pc|chr4:82906425:82906627:+	0	+
#Deleted in new
chr4	82907784	82907791	ENSG00000168152.12|THAP9|pc|chr4:82907784:82907791:+	0	+
#Deleted in new
chr4	82907784	82907915	ENSG00000168152.12|THAP9|pc|chr4:82907784:82907915:+	0	+
#Deleted in new
chr4	82907784	82907935	ENSG00000168152.12|THAP9|pc|chr4:82907784:82907935:+	0	+
#Deleted in new
chr4	82909972	82910267	ENSG00000189308.10|LIN54|pc|chr4:82909972:82910267:-	0	-
#Deleted in new
chr4	82910696	82910811	ENSG00000168152.12|THAP9|pc|chr4:82910696:82910811:+	0	+
#Deleted in new
chr4	82913230	82913441	ENSG00000189308.10|LIN54|pc|chr4:82913230:82913441:-	0	-
#Deleted in new
chr4	82916943	82917040	ENSG00000168152.12|THAP9|pc|chr4:82916943:82917040:+	0	+
#Partially deleted in new
chr4	82916943	82919460	ENSG00000168152.12|THAP9|pc|chr4:82916943:82919460:+	0	+
#Partially deleted in new
chr4	82916943	82919969	ENSG00000168152.12|THAP9|pc|chr4:82916943:82919969:+	0	+
#Deleted in new
chr4	82924689	82924850	ENSG00000189308.10|LIN54|pc|chr4:82924689:82924850:-	0	-
#Deleted in new
chr4	83065059	83065155	ENSG00000138663.8|COPS4|pc|chr4:83065059:83065155:+	0	+
#Deleted in new
chr4	83073205	83073353	ENSG00000138663.8|COPS4|pc|chr4:83073205:83073353:+	0	+
#Partially deleted in new
chr4	83090047	83090971	ENSG00000145287.10|PLAC8|pc|chr4:83090047:83090971:-	0	-
#Deleted in new
chr4	83109727	83109843	ENSG00000145287.10|PLAC8|pc|chr4:83109727:83109843:-	0	-
#Deleted in new
chr4	83115264	83115432	ENSG00000145287.10|PLAC8|pc|chr4:83115264:83115432:-	0	-
#Deleted in new
chr4	83117883	83117971	ENSG00000145287.10|PLAC8|pc|chr4:83117883:83117971:-	0	-
#Deleted in new
chr4	83134534	83134634	ENSG00000145287.10|PLAC8|pc|chr4:83134534:83134634:-	0	-
#Deleted in new
chr4	83136958	83137075	ENSG00000145287.10|PLAC8|pc|chr4:83136958:83137075:-	0	-
#Deleted in new
chr4	8320175	8320522	ENSG00000249145.1|LINC02517|lncRNA|chr4:8320175:8320522:+	0	+
#Deleted in new
chr4	8320278	8320522	ENSG00000248986.1|AC104825.1|lncRNA|chr4:8320278:8320522:+	0	+
#Deleted in new
chr4	8321956	8322032	ENSG00000248986.1|AC104825.1|lncRNA|chr4:8321956:8322032:+	0	+
#Deleted in new
chr4	8322125	8322243	ENSG00000248986.1|AC104825.1|lncRNA|chr4:8322125:8322243:+	0	+
#Deleted in new
chr4	83233511	83233657	ENSG00000250057.1|AC114781.2|lncRNA|chr4:83233511:83233657:-	0	-
#Deleted in new
chr4	8323718	8323863	ENSG00000249145.1|LINC02517|lncRNA|chr4:8323718:8323863:+	0	+
#Deleted in new
chr4	8323718	8323965	ENSG00000248986.1|AC104825.1|lncRNA|chr4:8323718:8323965:+	0	+
#Deleted in new
chr4	83238521	83238615	ENSG00000250057.1|AC114781.2|lncRNA|chr4:83238521:83238615:-	0	-
#Deleted in new
chr4	83261535	83261924	ENSG00000173085.13|COQ2|pc|chr4:83261535:83261924:-	0	-
#Deleted in new
chr4	83266696	83267208	ENSG00000173085.13|COQ2|pc|chr4:83266696:83267208:-	0	-
#Deleted in new
chr4	83267089	83267208	ENSG00000173085.13|COQ2|pc|chr4:83267089:83267208:-	0	-
#Deleted in new
chr4	83281431	83281596	ENSG00000173085.13|COQ2|pc|chr4:83281431:83281596:-	0	-
#Deleted in new
chr4	83466838	83466945	ENSG00000163322.13|ABRAXAS1|pc|chr4:83466838:83466945:-	0	-
#Partially deleted in new
chr4	83467025	83467504	ENSG00000163319.10|MRPS18C|pc|chr4:83467025:83467504:+	0	+
#Partially deleted in new
chr4	83469334	83469735	ENSG00000163319.10|MRPS18C|pc|chr4:83469334:83469735:+	0	+
#Partially deleted in new
chr4	83478807	83480368	ENSG00000163322.13|ABRAXAS1|pc|chr4:83478807:83480368:-	0	-
#Deleted in new
chr4	83523095	83523348	ENSG00000163322.13|ABRAXAS1|pc|chr4:83523095:83523348:-	0	-
#Deleted in new
chr4	836511	837224	ENSG00000260262.1|AC139887.3|lncRNA|chr4:836511:837224:-	0	-
#Deleted in new
chr4	83668509	83668806	ENSG00000249171.1|AC021192.1|lncRNA|chr4:83668509:83668806:-	0	-
#Deleted in new
chr4	83674701	83674817	ENSG00000249171.1|AC021192.1|lncRNA|chr4:83674701:83674817:-	0	-
#Deleted in new
chr4	83731537	83731755	ENSG00000249171.1|AC021192.1|lncRNA|chr4:83731537:83731755:-	0	-
#Deleted in new
chr4	8374067	8374167	ENSG00000087008.15|ACOX3|pc|chr4:8374067:8374167:-	0	-
#Partially deleted in new
chr4	8374467	8375152	ENSG00000087008.15|ACOX3|pc|chr4:8374467:8375152:-	0	-
#Deleted in new
chr4	8394850	8394891	ENSG00000087008.15|ACOX3|pc|chr4:8394850:8394891:-	0	-
#Deleted in new
chr4	84012054	84012119	ENSG00000250546.5|AC079160.1|lncRNA|chr4:84012054:84012119:-	0	-
#Deleted in new
chr4	84149218	84149256	ENSG00000250546.5|AC079160.1|lncRNA|chr4:84149218:84149256:-	0	-
#Deleted in new
chr4	84149218	84149288	ENSG00000250546.5|AC079160.1|lncRNA|chr4:84149218:84149288:-	0	-
#Deleted in new
chr4	8428350	8428461	ENSG00000087008.15|ACOX3|pc|chr4:8428350:8428461:-	0	-
#Deleted in new
chr4	8428350	8428486	ENSG00000087008.15|ACOX3|pc|chr4:8428350:8428486:-	0	-
#Deleted in new
chr4	84286668	84286827	ENSG00000250546.5|AC079160.1|lncRNA|chr4:84286668:84286827:-	0	-
#Deleted in new
chr4	84293219	84293412	ENSG00000250546.5|AC079160.1|lncRNA|chr4:84293219:84293412:-	0	-
#Deleted in new
chr4	8436139	8436399	ENSG00000155275.18|TRMT44|pc|chr4:8436139:8436399:+	0	+
#Deleted in new
chr4	8438791	8439301	ENSG00000155275.18|TRMT44|pc|chr4:8438791:8439301:+	0	+
#Deleted in new
chr4	8438868	8439042	ENSG00000155275.18|TRMT44|pc|chr4:8438868:8439042:+	0	+
#Deleted in new
chr4	8440647	8440711	ENSG00000087008.15|ACOX3|pc|chr4:8440647:8440711:-	0	-
#Partially deleted in new
chr4	8440647	8440723	ENSG00000087008.15|ACOX3|pc|chr4:8440647:8440723:-	0	-
#Deleted in new
chr4	8453409	8453711	ENSG00000251186.1|AC105345.2|lncRNA|chr4:8453409:8453711:-	0	-
#Deleted in new
chr4	8454415	8454570	ENSG00000155275.18|TRMT44|pc|chr4:8454415:8454570:+	0	+
#Partially deleted in new
chr4	8475771	8476526	ENSG00000155275.18|TRMT44|pc|chr4:8475771:8476526:+	0	+
#Partially deleted in new
chr4	8475771	8476554	ENSG00000155275.18|TRMT44|pc|chr4:8475771:8476554:+	0	+
#Partially deleted in new
chr4	8475771	8479533	ENSG00000155275.18|TRMT44|pc|chr4:8475771:8479533:+	0	+
#Deleted in new
chr4	8482269	8482439	ENSG00000205959.3|AC105345.1|lncRNA|chr4:8482269:8482439:+	0	+
#Deleted in new
chr4	84879405	84879494	ENSG00000163625.15|WDFY3|pc|chr4:84879405:84879494:-	0	-
#Deleted in new
chr4	8493265	8493531	ENSG00000155275.18|TRMT44|pc|chr4:8493265:8493531:+	0	+
#Deleted in new
chr4	85000690	85000765	ENSG00000180769.8|WDFY3-AS2|lncRNA|chr4:85000690:85000765:+	0	+
#Deleted in new
chr4	85004229	85004327	ENSG00000180769.8|WDFY3-AS2|lncRNA|chr4:85004229:85004327:+	0	+
#Deleted in new
chr4	85005473	85005568	ENSG00000180769.8|WDFY3-AS2|lncRNA|chr4:85005473:85005568:+	0	+
#Deleted in new
chr4	85006006	85006040	ENSG00000180769.8|WDFY3-AS2|lncRNA|chr4:85006006:85006040:+	0	+
#Deleted in new
chr4	8506827	8507507	ENSG00000205959.3|AC105345.1|lncRNA|chr4:8506827:8507507:+	0	+
#Deleted in new
chr4	8508797	8509195	ENSG00000205959.3|AC105345.1|lncRNA|chr4:8508797:8509195:+	0	+
#Deleted in new
chr4	8508797	8509799	ENSG00000205959.3|AC105345.1|lncRNA|chr4:8508797:8509799:+	0	+
#Partially deleted in new
chr4	850935	853828	ENSG00000178950.16|GAK|pc|chr4:850935:853828:-	0	-
#Deleted in new
chr4	8510261	8511003	ENSG00000205959.3|AC105345.1|lncRNA|chr4:8510261:8511003:+	0	+
#Deleted in new
chr4	8511830	8512610	ENSG00000205959.3|AC105345.1|lncRNA|chr4:8511830:8512610:+	0	+
#Deleted in new
chr4	8558724	8558981	ENSG00000155269.11|GPR78|pc|chr4:8558724:8558981:+	0	+
#Deleted in new
chr4	8558831	8558981	ENSG00000155269.11|GPR78|pc|chr4:8558831:8558981:+	0	+
#Deleted in new
chr4	8560564	8560633	ENSG00000155269.11|GPR78|pc|chr4:8560564:8560633:+	0	+
#Deleted in new
chr4	8572732	8572849	ENSG00000155269.11|GPR78|pc|chr4:8572732:8572849:+	0	+
#Deleted in new
chr4	8578324	8579310	ENSG00000155269.11|GPR78|pc|chr4:8578324:8579310:+	0	+
#Deleted in new
chr4	8580236	8580704	ENSG00000155269.11|GPR78|pc|chr4:8580236:8580704:+	0	+
#Deleted in new
chr4	8580394	8580524	ENSG00000155269.11|GPR78|pc|chr4:8580394:8580524:+	0	+
#Deleted in new
chr4	8580394	8580711	ENSG00000155269.11|GPR78|pc|chr4:8580394:8580711:+	0	+
#Deleted in new
chr4	8582790	8583050	ENSG00000155269.11|GPR78|pc|chr4:8582790:8583050:+	0	+
#Partially deleted in new
chr4	8587053	8587520	ENSG00000155269.11|GPR78|pc|chr4:8587053:8587520:+	0	+
#Partially deleted in new
chr4	8587053	8587548	ENSG00000155269.11|GPR78|pc|chr4:8587053:8587548:+	0	+
#Partially deleted in new
chr4	8587053	8587750	ENSG00000155269.11|GPR78|pc|chr4:8587053:8587750:+	0	+
#Deleted in new
chr4	85924696	85924740	ENSG00000138639.17|ARHGAP24|pc|chr4:85924696:85924740:+	0	+
#Deleted in new
chr4	859361	859493	ENSG00000178950.16|GAK|pc|chr4:859361:859493:-	0	-
#Deleted in new
chr4	8597414	8597596	ENSG00000109625.18|CPZ|pc|chr4:8597414:8597596:+	0	+
#Deleted in new
chr4	85975493	85975766	ENSG00000138639.17|ARHGAP24|pc|chr4:85975493:85975766:+	0	+
#Partially deleted in new
chr4	85990006	85992163	ENSG00000109339.20|MAPK10|pc|chr4:85990006:85992163:-	0	-
#Partially deleted in new
chr4	85990137	85992163	ENSG00000109339.20|MAPK10|pc|chr4:85990137:85992163:-	0	-
#Partially deleted in new
chr4	8599452	8599961	ENSG00000109625.18|CPZ|pc|chr4:8599452:8599961:+	0	+
#Deleted in new
chr4	86003570	86003704	ENSG00000109339.20|MAPK10|pc|chr4:86003570:86003704:-	0	-
#Deleted in new
chr4	86020221	86020865	ENSG00000109339.20|MAPK10|pc|chr4:86020221:86020865:-	0	-
#Partially deleted in new
chr4	86023930	86025572	ENSG00000109339.20|MAPK10|pc|chr4:86023930:86025572:-	0	-
#Deleted in new
chr4	86040872	86040984	ENSG00000109339.20|MAPK10|pc|chr4:86040872:86040984:-	0	-
#Deleted in new
chr4	86044539	86044755	ENSG00000109339.20|MAPK10|pc|chr4:86044539:86044755:-	0	-
#Partially deleted in new
chr4	86079498	86082344	ENSG00000109339.20|MAPK10|pc|chr4:86079498:86082344:-	0	-
#Deleted in new
chr4	86081005	86081118	ENSG00000109339.20|MAPK10|pc|chr4:86081005:86081118:-	0	-
#Deleted in new
chr4	86095134	86095374	ENSG00000109339.20|MAPK10|pc|chr4:86095134:86095374:-	0	-
#Deleted in new
chr4	86095176	86095374	ENSG00000109339.20|MAPK10|pc|chr4:86095176:86095374:-	0	-
#Deleted in new
chr4	8611162	8611269	ENSG00000155269.11|GPR78|pc|chr4:8611162:8611269:+	0	+
#Deleted in new
chr4	86119470	86119538	ENSG00000109339.20|MAPK10|pc|chr4:86119470:86119538:-	0	-
#Deleted in new
chr4	86119713	86119883	ENSG00000250062.5|AC104827.1|lncRNA|chr4:86119713:86119883:+	0	+
#Partially deleted in new
chr4	86119983	86120601	ENSG00000250062.5|AC104827.1|lncRNA|chr4:86119983:86120601:+	0	+
#Split in new
chr4	86123692	86125944	ENSG00000109339.20|MAPK10|pc|chr4:86123692:86125944:-	0	-
#Deleted in new
chr4	86127591	86127688	ENSG00000250062.5|AC104827.1|lncRNA|chr4:86127591:86127688:+	0	+
#Deleted in new
chr4	86127591	86127700	ENSG00000250062.5|AC104827.1|lncRNA|chr4:86127591:86127700:+	0	+
#Deleted in new
chr4	86151990	86152144	ENSG00000109339.20|MAPK10|pc|chr4:86151990:86152144:-	0	-
#Partially deleted in new
chr4	86151990	86152196	ENSG00000109339.20|MAPK10|pc|chr4:86151990:86152196:-	0	-
#Deleted in new
chr4	86171047	86171072	ENSG00000109339.20|MAPK10|pc|chr4:86171047:86171072:-	0	-
#Partially deleted in new
chr4	86191597	86194407	ENSG00000109339.20|MAPK10|pc|chr4:86191597:86194407:-	0	-
#Partially deleted in new
chr4	86191607	86194407	ENSG00000109339.20|MAPK10|pc|chr4:86191607:86194407:-	0	-
#Partially deleted in new
chr4	86191640	86194407	ENSG00000109339.20|MAPK10|pc|chr4:86191640:86194407:-	0	-
#Deleted in new
chr4	86193775	86193814	ENSG00000109339.20|MAPK10|pc|chr4:86193775:86193814:-	0	-
#Deleted in new
chr4	86277049	86277129	ENSG00000109339.20|MAPK10|pc|chr4:86277049:86277129:-	0	-
#Deleted in new
chr4	86277049	86277223	ENSG00000109339.20|MAPK10|pc|chr4:86277049:86277223:-	0	-
#Deleted in new
chr4	86277089	86277223	ENSG00000109339.20|MAPK10|pc|chr4:86277089:86277223:-	0	-
#Deleted in new
chr4	86277203	86277223	ENSG00000109339.20|MAPK10|pc|chr4:86277203:86277223:-	0	-
#Partially deleted in new
chr4	86321843	86322029	ENSG00000109339.20|MAPK10|pc|chr4:86321843:86322029:-	0	-
#Deleted in new
chr4	86332542	86332727	ENSG00000109339.20|MAPK10|pc|chr4:86332542:86332727:-	0	-
#Deleted in new
chr4	86340338	86340423	ENSG00000109339.20|MAPK10|pc|chr4:86340338:86340423:-	0	-
#Deleted in new
chr4	86340338	86340450	ENSG00000109339.20|MAPK10|pc|chr4:86340338:86340450:-	0	-
#Deleted in new
chr4	86370713	86370867	ENSG00000109339.20|MAPK10|pc|chr4:86370713:86370867:-	0	-
#Deleted in new
chr4	86370713	86370890	ENSG00000109339.20|MAPK10|pc|chr4:86370713:86370890:-	0	-
#Deleted in new
chr4	86384099	86384229	ENSG00000109339.20|MAPK10|pc|chr4:86384099:86384229:-	0	-
#Deleted in new
chr4	86384099	86384236	ENSG00000109339.20|MAPK10|pc|chr4:86384099:86384236:-	0	-
#Deleted in new
chr4	86392313	86392432	ENSG00000109339.20|MAPK10|pc|chr4:86392313:86392432:-	0	-
#Deleted in new
chr4	86429677	86429805	ENSG00000109339.20|MAPK10|pc|chr4:86429677:86429805:-	0	-
#Deleted in new
chr4	86453029	86453046	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453046:-	0	-
#Deleted in new
chr4	86453029	86453075	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453075:-	0	-
#Deleted in new
chr4	86453029	86453103	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453103:-	0	-
#Deleted in new
chr4	86453029	86453130	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453130:-	0	-
#Deleted in new
chr4	86453029	86453138	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453138:-	0	-
#Deleted in new
chr4	86453029	86453142	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453142:-	0	-
#Deleted in new
chr4	86453029	86453144	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453144:-	0	-
#Deleted in new
chr4	86453029	86453145	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453145:-	0	-
#Deleted in new
chr4	86453029	86453162	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453162:-	0	-
#Deleted in new
chr4	86453029	86453165	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453165:-	0	-
#Deleted in new
chr4	86453029	86453174	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453174:-	0	-
#Deleted in new
chr4	86453029	86453180	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453180:-	0	-
#Deleted in new
chr4	86453029	86453181	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453181:-	0	-
#Deleted in new
chr4	86453029	86453183	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453183:-	0	-
#Deleted in new
chr4	86453029	86453185	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453185:-	0	-
#Deleted in new
chr4	86453029	86453192	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453192:-	0	-
#Deleted in new
chr4	86453029	86453194	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453194:-	0	-
#Deleted in new
chr4	86453029	86453196	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453196:-	0	-
#Deleted in new
chr4	86453029	86453197	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453197:-	0	-
#Deleted in new
chr4	86453029	86453203	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453203:-	0	-
#Deleted in new
chr4	86453029	86453212	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453212:-	0	-
#Deleted in new
chr4	86453029	86453214	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453214:-	0	-
#Deleted in new
chr4	86453029	86453216	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453216:-	0	-
#Deleted in new
chr4	86453029	86453219	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453219:-	0	-
#Deleted in new
chr4	86453029	86453225	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453225:-	0	-
#Deleted in new
chr4	86453029	86453278	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453278:-	0	-
#Deleted in new
chr4	86453029	86453319	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453319:-	0	-
#Deleted in new
chr4	86453029	86453325	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453325:-	0	-
#Deleted in new
chr4	86453029	86453360	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453360:-	0	-
#Deleted in new
chr4	86453029	86453370	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453370:-	0	-
#Deleted in new
chr4	86453029	86453374	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453374:-	0	-
#Deleted in new
chr4	86453029	86453387	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453387:-	0	-
#Deleted in new
chr4	86453029	86453399	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453399:-	0	-
#Deleted in new
chr4	86453029	86453436	ENSG00000109339.20|MAPK10|pc|chr4:86453029:86453436:-	0	-
#Deleted in new
chr4	86457943	86457985	ENSG00000109339.20|MAPK10|pc|chr4:86457943:86457985:-	0	-
#Deleted in new
chr4	86780401	86780472	ENSG00000163629.12|PTPN13|pc|chr4:86780401:86780472:+	0	+
#Partially deleted in new
chr4	868538	869957	ENSG00000178950.16|GAK|pc|chr4:868538:869957:-	0	-
#Deleted in new
chr4	86890047	86890138	ENSG00000163633.10|C4orf36|pc|chr4:86890047:86890138:-	0	-
#Deleted in new
chr4	86890047	86890158	ENSG00000163633.10|C4orf36|pc|chr4:86890047:86890158:-	0	-
#Partially deleted in new
chr4	86892062	86892416	ENSG00000163633.10|C4orf36|pc|chr4:86892062:86892416:-	0	-
#Deleted in new
chr4	86892209	86892320	ENSG00000163633.10|C4orf36|pc|chr4:86892209:86892320:-	0	-
#Deleted in new
chr4	86924893	86926326	ENSG00000163633.10|C4orf36|pc|chr4:86924893:86926326:-	0	-
#Deleted in new
chr4	86925866	86926326	ENSG00000163633.10|C4orf36|pc|chr4:86925866:86926326:-	0	-
#Deleted in new
chr4	86926227	86926326	ENSG00000163633.10|C4orf36|pc|chr4:86926227:86926326:-	0	-
#Deleted in new
chr4	86932221	86932319	ENSG00000163633.10|C4orf36|pc|chr4:86932221:86932319:-	0	-
#Partially deleted in new
chr4	86933394	86933542	ENSG00000163633.10|C4orf36|pc|chr4:86933394:86933542:-	0	-
#Deleted in new
chr4	86973829	86974068	ENSG00000172493.20|AFF1|pc|chr4:86973829:86974068:+	0	+
#Partially deleted in new
chr4	87219523	87221390	ENSG00000145332.13|KLHL8|pc|chr4:87219523:87221390:-	0	-
#Deleted in new
chr4	87220034	87220268	ENSG00000145332.13|KLHL8|pc|chr4:87220034:87220268:-	0	-
#Deleted in new
chr4	87220417	87220463	ENSG00000145332.13|KLHL8|pc|chr4:87220417:87220463:-	0	-
#Partially deleted in new
chr4	87220417	87220497	ENSG00000145332.13|KLHL8|pc|chr4:87220417:87220497:-	0	-
#Deleted in new
chr4	87240257	87240314	ENSG00000145332.13|KLHL8|pc|chr4:87240257:87240314:-	0	-
#Deleted in new
chr4	87261930	87262099	ENSG00000250572.1|AC108516.1|lncRNA|chr4:87261930:87262099:-	0	-
#Deleted in new
chr4	87266734	87266822	ENSG00000250572.1|AC108516.1|lncRNA|chr4:87266734:87266822:-	0	-
#Partially deleted in new
chr4	87303788	87305308	ENSG00000170509.11|HSD17B13|pc|chr4:87303788:87305308:-	0	-
#Deleted in new
chr4	87345140	87345210	ENSG00000255723.1|AC108516.2|lncRNA|chr4:87345140:87345210:-	0	-
#Deleted in new
chr4	87365932	87366000	ENSG00000198189.10|HSD17B11|pc|chr4:87365932:87366000:-	0	-
#Deleted in new
chr4	87365932	87366067	ENSG00000198189.10|HSD17B11|pc|chr4:87365932:87366067:-	0	-
#Deleted in new
chr4	87373214	87373278	ENSG00000198189.10|HSD17B11|pc|chr4:87373214:87373278:-	0	-
#Deleted in new
chr4	87385789	87385907	ENSG00000198189.10|HSD17B11|pc|chr4:87385789:87385907:-	0	-
#Deleted in new
chr4	87434225	87434408	ENSG00000170502.12|NUDT9|pc|chr4:87434225:87434408:+	0	+
#Deleted in new
chr4	87445321	87445507	ENSG00000170502.12|NUDT9|pc|chr4:87445321:87445507:+	0	+
#Deleted in new
chr4	8745929	8746033	ENSG00000250915.1|AC209005.1|lncRNA|chr4:8745929:8746033:-	0	-
#Deleted in new
chr4	87504821	87504923	ENSG00000152583.12|SPARCL1|pc|chr4:87504821:87504923:-	0	-
#Partially deleted in new
chr4	87568034	87568533	ENSG00000249001.5|AC093895.1|lncRNA|chr4:87568034:87568533:-	0	-
#Deleted in new
chr4	87660702	87660796	ENSG00000249001.5|AC093895.1|lncRNA|chr4:87660702:87660796:-	0	-
#Deleted in new
chr4	87672989	87673039	ENSG00000249001.5|AC093895.1|lncRNA|chr4:87672989:87673039:-	0	-
#Deleted in new
chr4	87672989	87673124	ENSG00000249001.5|AC093895.1|lncRNA|chr4:87672989:87673124:-	0	-
#Deleted in new
chr4	87682997	87683304	ENSG00000249001.5|AC093895.1|lncRNA|chr4:87682997:87683304:-	0	-
#Partially deleted in new
chr4	87730362	87730493	ENSG00000249001.5|AC093895.1|lncRNA|chr4:87730362:87730493:-	0	-
#Deleted in new
chr4	87732314	87732370	ENSG00000249001.5|AC093895.1|lncRNA|chr4:87732314:87732370:-	0	-
#Deleted in new
chr4	87821410	87821471	ENSG00000152595.16|MEPE|pc|chr4:87821410:87821471:+	0	+
#Deleted in new
chr4	87837638	87837774	ENSG00000152595.16|MEPE|pc|chr4:87837638:87837774:+	0	+
#Deleted in new
chr4	88158385	88158912	ENSG00000118777.10|ABCG2|pc|chr4:88158385:88158912:-	0	-
#Deleted in new
chr4	88158576	88158671	ENSG00000118777.10|ABCG2|pc|chr4:88158576:88158671:-	0	-
#Deleted in new
chr4	88230993	88231322	ENSG00000118777.10|ABCG2|pc|chr4:88230993:88231322:-	0	-
#Deleted in new
chr4	88311795	88311871	ENSG00000246375.2|AC107067.1|lncRNA|chr4:88311795:88311871:+	0	+
#Deleted in new
chr4	88316685	88316807	ENSG00000246375.2|AC107067.1|lncRNA|chr4:88316685:88316807:+	0	+
#Deleted in new
chr4	88319330	88319425	ENSG00000246375.2|AC107067.1|lncRNA|chr4:88319330:88319425:+	0	+
#Deleted in new
chr4	88330180	88331421	ENSG00000246375.2|AC107067.1|lncRNA|chr4:88330180:88331421:+	0	+
#Deleted in new
chr4	88398396	88399769	ENSG00000138642.14|HERC6|pc|chr4:88398396:88399769:+	0	+
#Partially deleted in new
chr4	88440147	88440640	ENSG00000138642.14|HERC6|pc|chr4:88440147:88440640:+	0	+
#Deleted in new
chr4	88457116	88457534	ENSG00000138646.8|HERC5|pc|chr4:88457116:88457534:+	0	+
#Deleted in new
chr4	88457892	88458105	ENSG00000138646.8|HERC5|pc|chr4:88457892:88458105:+	0	+
#Deleted in new
chr4	88459346	88459470	ENSG00000138646.8|HERC5|pc|chr4:88459346:88459470:+	0	+
#Deleted in new
chr4	88460094	88460171	ENSG00000138646.8|HERC5|pc|chr4:88460094:88460171:+	0	+
#Deleted in new
chr4	8846075	8846324	ENSG00000215612.7|HMX1|pc|chr4:8846075:8846324:-	0	-
#Deleted in new
chr4	88463531	88463623	ENSG00000138646.8|HERC5|pc|chr4:88463531:88463623:+	0	+
#Deleted in new
chr4	88467855	88467936	ENSG00000138646.8|HERC5|pc|chr4:88467855:88467936:+	0	+
#Deleted in new
chr4	88468345	88468422	ENSG00000138646.8|HERC5|pc|chr4:88468345:88468422:+	0	+
#Deleted in new
chr4	88469156	88469260	ENSG00000138646.8|HERC5|pc|chr4:88469156:88469260:+	0	+
#Deleted in new
chr4	88473009	88473889	ENSG00000138646.8|HERC5|pc|chr4:88473009:88473889:+	0	+
#Deleted in new
chr4	88473012	88473125	ENSG00000138646.8|HERC5|pc|chr4:88473012:88473125:+	0	+
#Deleted in new
chr4	88499925	88499992	ENSG00000138646.8|HERC5|pc|chr4:88499925:88499992:+	0	+
#Deleted in new
chr4	88500914	88500985	ENSG00000138646.8|HERC5|pc|chr4:88500914:88500985:+	0	+
#Duplicated in new
chr4	88504231	88504597	ENSG00000138646.8|HERC5|pc|chr4:88504231:88504597:+	0	+
#Deleted in new
chr4	88524755	88524991	ENSG00000138641.15|HERC3|pc|chr4:88524755:88524991:+	0	+
#Deleted in new
chr4	88524764	88524983	ENSG00000138641.15|HERC3|pc|chr4:88524764:88524983:+	0	+
#Partially deleted in new
chr4	885782	888970	ENSG00000178950.16|GAK|pc|chr4:885782:888970:-	0	-
#Deleted in new
chr4	8858714	8859097	ENSG00000258507.1|AC116612.1|lncRNA|chr4:8858714:8859097:-	0	-
#Deleted in new
chr4	8860648	8860827	ENSG00000258507.1|AC116612.1|lncRNA|chr4:8860648:8860827:-	0	-
#Deleted in new
chr4	88709788	88710265	ENSG00000248019.2|FAM13A-AS1|lncRNA|chr4:88709788:88710265:+	0	+
#Deleted in new
chr4	88711854	88712017	ENSG00000248019.2|FAM13A-AS1|lncRNA|chr4:88711854:88712017:+	0	+
#Partially deleted in new
chr4	88855366	88856026	ENSG00000138640.14|FAM13A|pc|chr4:88855366:88856026:-	0	-
#Partially deleted in new
chr4	88855509	88856026	ENSG00000138640.14|FAM13A|pc|chr4:88855509:88856026:-	0	-
#Deleted in new
chr4	88905685	88905718	ENSG00000138640.14|FAM13A|pc|chr4:88905685:88905718:-	0	-
#Deleted in new
chr4	88936282	88938241	ENSG00000138640.14|FAM13A|pc|chr4:88936282:88938241:-	0	-
#Deleted in new
chr4	88936313	88936422	ENSG00000138640.14|FAM13A|pc|chr4:88936313:88936422:-	0	-
#Deleted in new
chr4	88938087	88938241	ENSG00000138640.14|FAM13A|pc|chr4:88938087:88938241:-	0	-
#Partially deleted in new
chr4	88989623	88991150	ENSG00000138640.14|FAM13A|pc|chr4:88989623:88991150:-	0	-
#Deleted in new
chr4	89008950	89009078	ENSG00000138640.14|FAM13A|pc|chr4:89008950:89009078:-	0	-
#Deleted in new
chr4	89020459	89020669	ENSG00000138640.14|FAM13A|pc|chr4:89020459:89020669:-	0	-
#Deleted in new
chr4	89020529	89020669	ENSG00000138640.14|FAM13A|pc|chr4:89020529:89020669:-	0	-
#Deleted in new
chr4	89056937	89056988	ENSG00000138640.14|FAM13A|pc|chr4:89056937:89056988:-	0	-
#Deleted in new
chr4	89056937	89057150	ENSG00000138640.14|FAM13A|pc|chr4:89056937:89057150:-	0	-
#Deleted in new
chr4	89056937	89057160	ENSG00000138640.14|FAM13A|pc|chr4:89056937:89057160:-	0	-
#Deleted in new
chr4	89056937	89057162	ENSG00000138640.14|FAM13A|pc|chr4:89056937:89057162:-	0	-
#Deleted in new
chr4	89056937	89057172	ENSG00000138640.14|FAM13A|pc|chr4:89056937:89057172:-	0	-
#Deleted in new
chr4	89057117	89057345	ENSG00000138640.14|FAM13A|pc|chr4:89057117:89057345:-	0	-
#Partially deleted in new
chr4	89111041	89111398	ENSG00000138640.14|FAM13A|pc|chr4:89111041:89111398:-	0	-
#Deleted in new
chr4	89119283	89119871	ENSG00000270720.1|AC104785.1|lncRNA|chr4:89119283:89119871:+	0	+
#Deleted in new
chr4	89551355	89551570	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89551355:89551570:+	0	+
#Deleted in new
chr4	89551389	89551459	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89551389:89551459:+	0	+
#Deleted in new
chr4	89587820	89587940	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89587820:89587940:+	0	+
#Deleted in new
chr4	89587865	89587940	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89587865:89587940:+	0	+
#Deleted in new
chr4	89587908	89587940	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89587908:89587940:+	0	+
#Deleted in new
chr4	89627781	89627917	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89627781:89627917:+	0	+
#Deleted in new
chr4	89627783	89627917	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89627783:89627917:+	0	+
#Deleted in new
chr4	89642416	89642520	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89642416:89642520:+	0	+
#Deleted in new
chr4	89651115	89651194	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89651115:89651194:+	0	+
#Deleted in new
chr4	89653270	89653385	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89653270:89653385:+	0	+
#Deleted in new
chr4	89660213	89660355	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89660213:89660355:+	0	+
#Deleted in new
chr4	89681511	89681684	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89681511:89681684:+	0	+
#Deleted in new
chr4	89681522	89681684	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89681522:89681684:+	0	+
#Deleted in new
chr4	89684444	89686704	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89684444:89686704:+	0	+
#Deleted in new
chr4	89691284	89691373	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89691284:89691373:+	0	+
#Deleted in new
chr4	89691284	89691405	ENSG00000251095.6|AC097478.1|lncRNA|chr4:89691284:89691405:+	0	+
#Partially deleted in new
chr4	89747801	89747853	ENSG00000277695.1|AC097478.4|lncRNA|chr4:89747801:89747853:+	0	+
#Partially deleted in new
chr4	89748282	89749154	ENSG00000276542.1|AC097478.3|lncRNA|chr4:89748282:89749154:+	0	+
#Deleted in new
chr4	89749292	89749548	ENSG00000277695.1|AC097478.4|lncRNA|chr4:89749292:89749548:+	0	+
#Deleted in new
chr4	89755798	89755853	ENSG00000277695.1|AC097478.4|lncRNA|chr4:89755798:89755853:+	0	+
#Partially deleted in new
chr4	89836961	89837076	ENSG00000145335.15|SNCA|pc|chr4:89836961:89837076:-	0	-
#Partially deleted in new
chr4	89836961	89837199	ENSG00000145335.15|SNCA|pc|chr4:89836961:89837199:-	0	-
#Partially deleted in new
chr4	89836961	89837228	ENSG00000145335.15|SNCA|pc|chr4:89836961:89837228:-	0	-
#Deleted in new
chr4	89841710	89841978	ENSG00000247775.2|SNCA-AS1|lncRNA|chr4:89841710:89841978:+	0	+
#Deleted in new
chr4	89879531	89879602	ENSG00000138722.9|MMRN1|pc|chr4:89879531:89879602:+	0	+
#Deleted in new
chr4	90403923	90404019	ENSG00000184305.14|CCSER1|pc|chr4:90403923:90404019:+	0	+
#Deleted in new
chr4	90403923	90404131	ENSG00000184305.14|CCSER1|pc|chr4:90403923:90404131:+	0	+
#Deleted in new
chr4	90641939	90642471	ENSG00000184305.14|CCSER1|pc|chr4:90641939:90642471:+	0	+
#Deleted in new
chr4	90649507	90649624	ENSG00000184305.14|CCSER1|pc|chr4:90649507:90649624:+	0	+
#Deleted in new
chr4	90649510	90649624	ENSG00000184305.14|CCSER1|pc|chr4:90649510:90649624:+	0	+
#Deleted in new
chr4	90649519	90649624	ENSG00000184305.14|CCSER1|pc|chr4:90649519:90649624:+	0	+
#Deleted in new
chr4	90663844	90663935	ENSG00000184305.14|CCSER1|pc|chr4:90663844:90663935:+	0	+
#Deleted in new
chr4	90693388	90693498	ENSG00000184305.14|CCSER1|pc|chr4:90693388:90693498:+	0	+
#Deleted in new
chr4	90727203	90727297	ENSG00000184305.14|CCSER1|pc|chr4:90727203:90727297:+	0	+
#Deleted in new
chr4	90780441	90780568	ENSG00000184305.14|CCSER1|pc|chr4:90780441:90780568:+	0	+
#Deleted in new
chr4	90780441	90780771	ENSG00000184305.14|CCSER1|pc|chr4:90780441:90780771:+	0	+
#Deleted in new
chr4	90918229	90918327	ENSG00000184305.14|CCSER1|pc|chr4:90918229:90918327:+	0	+
#Deleted in new
chr4	91017157	91017304	ENSG00000184305.14|CCSER1|pc|chr4:91017157:91017304:+	0	+
#Deleted in new
chr4	91108022	91108100	ENSG00000248984.1|AC004054.1|lncRNA|chr4:91108022:91108100:-	0	-
#Deleted in new
chr4	91129842	91130040	ENSG00000184305.14|CCSER1|pc|chr4:91129842:91130040:+	0	+
#Duplicated in new
chr4	913606	914029	ENSG00000178950.16|GAK|pc|chr4:913606:914029:-	0	-
#Deleted in new
chr4	915497	915678	ENSG00000178950.16|GAK|pc|chr4:915497:915678:-	0	-
#Deleted in new
chr4	915497	915735	ENSG00000178950.16|GAK|pc|chr4:915497:915735:-	0	-
#Deleted in new
chr4	915497	915756	ENSG00000178950.16|GAK|pc|chr4:915497:915756:-	0	-
#Deleted in new
chr4	91603274	91605292	ENSG00000279013.1|AC110774.1|lncRNA|chr4:91603274:91605292:+	0	+
#Deleted in new
chr4	9170408	9170522	ENSG00000229924.3|FAM90A26|pc|chr4:9170408:9170522:+	0	+
#Deleted in new
chr4	9171531	9171738	ENSG00000229924.3|FAM90A26|pc|chr4:9171531:9171738:+	0	+
#Deleted in new
chr4	9172012	9172169	ENSG00000229924.3|FAM90A26|pc|chr4:9172012:9172169:+	0	+
#Deleted in new
chr4	9173116	9173295	ENSG00000229924.3|FAM90A26|pc|chr4:9173116:9173295:+	0	+
#Deleted in new
chr4	91887885	91888104	ENSG00000249052.1|AC093810.1|lncRNA|chr4:91887885:91888104:+	0	+
#Deleted in new
chr4	91888958	91889068	ENSG00000249052.1|AC093810.1|lncRNA|chr4:91888958:91889068:+	0	+
#Deleted in new
chr4	9212546	9212608	ENSG00000231396.2|USP17L10|pc|chr4:9212546:9212608:+	0	+
#Deleted in new
chr4	9217294	9217356	ENSG00000233136.2|USP17L11|pc|chr4:9217294:9217356:+	0	+
#Deleted in new
chr4	9226785	9226847	ENSG00000232399.3|USP17L13|pc|chr4:9226785:9226847:+	0	+
#Deleted in new
chr4	92268766	92269356	ENSG00000249152.1|LNCPRESS2|lncRNA|chr4:92268766:92269356:-	0	-
#Deleted in new
chr4	92277049	92277075	ENSG00000249152.1|LNCPRESS2|lncRNA|chr4:92277049:92277075:-	0	-
#Deleted in new
chr4	9236272	9236334	ENSG00000223569.6|USP17L15|pc|chr4:9236272:9236334:+	0	+
#Deleted in new
chr4	9245768	9245830	ENSG00000249104.2|USP17L17|pc|chr4:9245768:9245830:+	0	+
#Deleted in new
chr4	9250519	9250581	ENSG00000250844.2|USP17L18|pc|chr4:9250519:9250581:+	0	+
#Deleted in new
chr4	9255267	9255329	ENSG00000248920.2|USP17L19|pc|chr4:9255267:9255329:+	0	+
#Deleted in new
chr4	9260013	9260075	ENSG00000250745.2|USP17L20|pc|chr4:9260013:9260075:+	0	+
#Deleted in new
chr4	9264761	9264823	ENSG00000249811.2|USP17L21|pc|chr4:9264761:9264823:+	0	+
#Deleted in new
chr4	9269508	9269570	ENSG00000248933.2|USP17L22|pc|chr4:9269508:9269570:+	0	+
#Partially deleted in new
chr4	93111959	93112247	ENSG00000152208.12|GRID2|pc|chr4:93111959:93112247:+	0	+
#Partially deleted in new
chr4	93203948	93204086	ENSG00000152208.12|GRID2|pc|chr4:93203948:93204086:+	0	+
#Deleted in new
chr4	9327054	9327116	ENSG00000232264.4|USP17L24|pc|chr4:9327054:9327116:+	0	+
#Deleted in new
chr4	9331800	9331862	ENSG00000230430.4|USP17L25|pc|chr4:9331800:9331862:+	0	+
#Deleted in new
chr4	93318622	93318875	ENSG00000250908.1|AC110800.1|lncRNA|chr4:93318622:93318875:-	0	-
#Deleted in new
chr4	93319598	93319786	ENSG00000250908.1|AC110800.1|lncRNA|chr4:93319598:93319786:-	0	-
#Deleted in new
chr4	9336547	9336609	ENSG00000229579.4|USP17L26|pc|chr4:9336547:9336609:+	0	+
#Deleted in new
chr4	94136023	94136159	ENSG00000246541.2|AC096746.1|lncRNA|chr4:94136023:94136159:-	0	-
#Deleted in new
chr4	94162596	94162721	ENSG00000246541.2|AC096746.1|lncRNA|chr4:94162596:94162721:-	0	-
#Deleted in new
chr4	94163897	94163929	ENSG00000246541.2|AC096746.1|lncRNA|chr4:94163897:94163929:-	0	-
#Deleted in new
chr4	94456243	94457184	ENSG00000163110.14|PDLIM5|pc|chr4:94456243:94457184:+	0	+
#Deleted in new
chr4	94549793	94549986	ENSG00000163110.14|PDLIM5|pc|chr4:94549793:94549986:+	0	+
#Deleted in new
chr4	94656817	94656911	ENSG00000163110.14|PDLIM5|pc|chr4:94656817:94656911:+	0	+
#Deleted in new
chr4	94702449	94702570	ENSG00000249951.1|AC108067.1|lncRNA|chr4:94702449:94702570:+	0	+
#Deleted in new
chr4	948410	948615	ENSG00000127419.16|TMEM175|pc|chr4:948410:948615:+	0	+
#Deleted in new
chr4	948510	948615	ENSG00000127419.16|TMEM175|pc|chr4:948510:948615:+	0	+
#Deleted in new
chr4	956296	956892	ENSG00000127419.16|TMEM175|pc|chr4:956296:956892:+	0	+
#Deleted in new
chr4	96310700	96310794	ENSG00000248510.2|LINC02267|lncRNA|chr4:96310700:96310794:+	0	+
#Deleted in new
chr4	96310731	96310794	ENSG00000248510.2|LINC02267|lncRNA|chr4:96310731:96310794:+	0	+
#Deleted in new
chr4	96362859	96364452	ENSG00000248510.2|LINC02267|lncRNA|chr4:96362859:96364452:+	0	+
#Deleted in new
chr4	96451491	96451561	ENSG00000248510.2|LINC02267|lncRNA|chr4:96451491:96451561:+	0	+
#Deleted in new
chr4	96818264	96818864	ENSG00000248510.2|LINC02267|lncRNA|chr4:96818264:96818864:+	0	+
#Deleted in new
chr4	97120700	97120765	ENSG00000253170.1|AC108515.1|lncRNA|chr4:97120700:97120765:+	0	+
#Deleted in new
chr4	97134599	97135059	ENSG00000253170.1|AC108515.1|lncRNA|chr4:97134599:97135059:+	0	+
#Deleted in new
chr4	97263447	97263581	ENSG00000163116.9|STPG2|pc|chr4:97263447:97263581:-	0	-
#Deleted in new
chr4	97439353	97439421	ENSG00000251620.1|STPG2-AS1|lncRNA|chr4:97439353:97439421:+	0	+
#Deleted in new
chr4	97463544	97463592	ENSG00000251620.1|STPG2-AS1|lncRNA|chr4:97463544:97463592:+	0	+
#Deleted in new
chr4	97489773	97489812	ENSG00000251620.1|STPG2-AS1|lncRNA|chr4:97489773:97489812:+	0	+
#Deleted in new
chr4	97489995	97490164	ENSG00000251620.1|STPG2-AS1|lncRNA|chr4:97489995:97490164:+	0	+
#Deleted in new
chr4	97572647	97572718	ENSG00000254044.5|AC034154.1|lncRNA|chr4:97572647:97572718:-	0	-
#Partially deleted in new
chr4	97633477	97633811	ENSG00000254044.5|AC034154.1|lncRNA|chr4:97633477:97633811:-	0	-
#Partially deleted in new
chr4	97633477	97633823	ENSG00000254044.5|AC034154.1|lncRNA|chr4:97633477:97633823:-	0	-
#Deleted in new
chr4	9771152	9771369	ENSG00000109667.11|SLC2A9|pc|chr4:9771152:9771369:-	0	-
#Deleted in new
chr4	97893051	97893203	ENSG00000163116.9|STPG2|pc|chr4:97893051:97893203:-	0	-
#Deleted in new
chr4	979072	979504	ENSG00000145217.13|SLC26A1|pc|chr4:979072:979504:-	0	-
#Deleted in new
chr4	979405	979504	ENSG00000145217.13|SLC26A1|pc|chr4:979405:979504:-	0	-
#Deleted in new
chr4	9798659	9799241	ENSG00000109667.11|SLC2A9|pc|chr4:9798659:9799241:-	0	-
#Deleted in new
chr4	9799077	9799241	ENSG00000109667.11|SLC2A9|pc|chr4:9799077:9799241:-	0	-
#Partially deleted in new
chr4	98251687	98252005	ENSG00000214559.3|AC019077.1|lncRNA|chr4:98251687:98252005:-	0	-
#Deleted in new
chr4	98296917	98296990	ENSG00000138698.14|RAP1GDS1|pc|chr4:98296917:98296990:+	0	+
#Deleted in new
chr4	98395940	98396909	ENSG00000138698.14|RAP1GDS1|pc|chr4:98395940:98396909:+	0	+
#Deleted in new
chr4	98500177	98500271	ENSG00000251523.1|AC108159.1|lncRNA|chr4:98500177:98500271:+	0	+
#Deleted in new
chr4	98574456	98574582	ENSG00000168785.7|TSPAN5|pc|chr4:98574456:98574582:-	0	-
#Deleted in new
chr4	98574743	98574905	ENSG00000168785.7|TSPAN5|pc|chr4:98574743:98574905:-	0	-
#Deleted in new
chr4	986805	986895	ENSG00000145214.13|DGKQ|pc|chr4:986805:986895:-	0	-
#Partially deleted in new
chr4	98871683	98881142	ENSG00000151247.12|EIF4E|pc|chr4:98871683:98881142:-	0	-
#Split in new
chr4	98886350	98887192	ENSG00000151247.12|EIF4E|pc|chr4:98886350:98887192:-	0	-
#Deleted in new
chr4	98886453	98886546	ENSG00000151247.12|EIF4E|pc|chr4:98886453:98886546:-	0	-
#Deleted in new
chr4	98895121	98895563	ENSG00000151247.12|EIF4E|pc|chr4:98895121:98895563:-	0	-
#Deleted in new
chr4	98925971	98926514	ENSG00000151247.12|EIF4E|pc|chr4:98925971:98926514:-	0	-
#Deleted in new
chr4	98941780	98941955	ENSG00000263923.1|AC019131.1|lncRNA|chr4:98941780:98941955:+	0	+
#Deleted in new
chr4	98985605	98985692	ENSG00000263923.1|AC019131.1|lncRNA|chr4:98985605:98985692:+	0	+
#Deleted in new
chr4	98986494	98986597	ENSG00000263923.1|AC019131.1|lncRNA|chr4:98986494:98986597:+	0	+
#Partially deleted in new
chr4	98994799	98994994	ENSG00000263923.1|AC019131.1|lncRNA|chr4:98994799:98994994:+	0	+
#Deleted in new
chr4	99005768	99005801	ENSG00000164024.11|METAP1|pc|chr4:99005768:99005801:+	0	+
#Deleted in new
chr4	99005768	99005866	ENSG00000164024.11|METAP1|pc|chr4:99005768:99005866:+	0	+
#Deleted in new
chr4	99005768	99005870	ENSG00000164024.11|METAP1|pc|chr4:99005768:99005870:+	0	+
#Deleted in new
chr4	99031507	99031662	ENSG00000164024.11|METAP1|pc|chr4:99031507:99031662:+	0	+
#Partially deleted in new
chr4	99070977	99072441	ENSG00000197894.10|ADH5|pc|chr4:99070977:99072441:-	0	-
#Deleted in new
chr4	99085413	99085623	ENSG00000197894.10|ADH5|pc|chr4:99085413:99085623:-	0	-
#Deleted in new
chr4	99085413	99085633	ENSG00000197894.10|ADH5|pc|chr4:99085413:99085633:-	0	-
#Deleted in new
chr4	99102362	99102665	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99102362:99102665:+	0	+
#Deleted in new
chr4	99102767	99102793	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99102767:99102793:+	0	+
#Partially deleted in new
chr4	99123656	99124466	ENSG00000198099.8|ADH4|pc|chr4:99123656:99124466:-	0	-
#Partially deleted in new
chr4	99123666	99124441	ENSG00000198099.8|ADH4|pc|chr4:99123666:99124441:-	0	-
#Partially deleted in new
chr4	99123666	99124466	ENSG00000198099.8|ADH4|pc|chr4:99123666:99124466:-	0	-
#Deleted in new
chr4	99133554	99133805	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99133554:99133805:+	0	+
#Deleted in new
chr4	99161783	99161904	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99161783:99161904:+	0	+
#Deleted in new
chr4	99161809	99161904	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99161809:99161904:+	0	+
#Deleted in new
chr4	99188644	99188855	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99188644:99188855:+	0	+
#Deleted in new
chr4	99219134	99219174	ENSG00000172955.17|ADH6|pc|chr4:99219134:99219174:-	0	-
#Deleted in new
chr4	99219134	99219235	ENSG00000172955.17|ADH6|pc|chr4:99219134:99219235:-	0	-
#Deleted in new
chr4	99219134	99219243	ENSG00000172955.17|ADH6|pc|chr4:99219134:99219243:-	0	-
#Deleted in new
chr4	99219134	99219246	ENSG00000172955.17|ADH6|pc|chr4:99219134:99219246:-	0	-
#Deleted in new
chr4	99219134	99219537	ENSG00000172955.17|ADH6|pc|chr4:99219134:99219537:-	0	-
#Deleted in new
chr4	9922813	9922950	ENSG00000249219.1|AC108199.1|lncRNA|chr4:9922813:9922950:+	0	+
#Deleted in new
chr4	9923775	9924146	ENSG00000249219.1|AC108199.1|lncRNA|chr4:9923775:9924146:+	0	+
#Deleted in new
chr4	99252834	99253132	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99252834:99253132:+	0	+
#Deleted in new
chr4	99253919	99254063	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99253919:99254063:+	0	+
#Deleted in new
chr4	99253928	99254063	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99253928:99254063:+	0	+
#Deleted in new
chr4	99254373	99254439	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99254373:99254439:+	0	+
#Deleted in new
chr4	99263501	99263576	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99263501:99263576:+	0	+
#Deleted in new
chr4	99263501	99263810	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99263501:99263810:+	0	+
#Deleted in new
chr4	99267056	99267105	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99267056:99267105:+	0	+
#Deleted in new
chr4	99267670	99267836	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99267670:99267836:+	0	+
#Deleted in new
chr4	99274961	99275051	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99274961:99275051:+	0	+
#Deleted in new
chr4	99278452	99278509	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99278452:99278509:+	0	+
#Deleted in new
chr4	99288665	99288785	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99288665:99288785:+	0	+
#Deleted in new
chr4	99300298	99300370	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99300298:99300370:+	0	+
#Deleted in new
chr4	99300468	99300655	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99300468:99300655:+	0	+
#Deleted in new
chr4	99300950	99301298	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99300950:99301298:+	0	+
#Deleted in new
chr4	99300950	99301356	ENSG00000246090.6|AP002026.1|lncRNA|chr4:99300950:99301356:+	0	+
#Split in new
chr4	99304963	99307864	ENSG00000196616.13|ADH1B|pc|chr4:99304963:99307864:-	0	-
#Split in new
chr4	99304976	99307864	ENSG00000196616.13|ADH1B|pc|chr4:99304976:99307864:-	0	-
#Duplicated in new
chr4	99313504	99318867	ENSG00000196616.13|ADH1B|pc|chr4:99313504:99318867:-	0	-
#Deleted in new
chr4	99351012	99351132	ENSG00000248144.5|ADH1C|pc|chr4:99351012:99351132:-	0	-
#Deleted in new
chr4	99519241	99519365	ENSG00000138813.9|C4orf17|pc|chr4:99519241:99519365:+	0	+
#Deleted in new
chr4	99535963	99536156	ENSG00000138813.9|C4orf17|pc|chr4:99535963:99536156:+	0	+
#Deleted in new
chr4	99570699	99570865	ENSG00000138823.13|MTTP|pc|chr4:99570699:99570865:+	0	+
#Deleted in new
chr4	99570703	99570865	ENSG00000138823.13|MTTP|pc|chr4:99570703:99570865:+	0	+
#Deleted in new
chr4	99595493	99595641	ENSG00000248676.1|AC083902.1|lncRNA|chr4:99595493:99595641:-	0	-
#Deleted in new
chr4	99625881	99625913	ENSG00000248676.1|AC083902.1|lncRNA|chr4:99625881:99625913:-	0	-
#Partially deleted in new
chr4	99878335	99882067	ENSG00000109270.12|LAMTOR3|pc|chr4:99878335:99882067:-	0	-
#Deleted in new
chr4	99910348	99910375	ENSG00000164031.16|DNAJB14|pc|chr4:99910348:99910375:-	0	-
#Deleted in new
chr4	99923680	99923877	ENSG00000164031.16|DNAJB14|pc|chr4:99923680:99923877:-	0	-
#Deleted in new
chr4	99924759	99924815	ENSG00000164031.16|DNAJB14|pc|chr4:99924759:99924815:-	0	-
#Deleted in new
chr4	99924759	99927091	ENSG00000164031.16|DNAJB14|pc|chr4:99924759:99927091:-	0	-
#Deleted in new
chr4	99924790	99924815	ENSG00000164031.16|DNAJB14|pc|chr4:99924790:99924815:-	0	-
#Deleted in new
chr4	99928541	99928617	ENSG00000164031.16|DNAJB14|pc|chr4:99928541:99928617:-	0	-
#Deleted in new
chr4	999709	1000064	ENSG00000127415.12|IDUA|pc|chr4:999709:1000064:+	0	+
#Deleted in new
chr5	100401440	100401783	ENSG00000249787.1|AC113385.1|lncRNA|chr5:100401440:100401783:+	0	+
#Deleted in new
chr5	100407254	100407373	ENSG00000249787.1|AC113385.1|lncRNA|chr5:100407254:100407373:+	0	+
#Deleted in new
chr5	100408798	100408899	ENSG00000249787.1|AC113385.1|lncRNA|chr5:100408798:100408899:+	0	+
#Deleted in new
chr5	100449753	100451097	ENSG00000247877.6|AC021086.1|lncRNA|chr5:100449753:100451097:-	0	-
#Deleted in new
chr5	100450934	100451097	ENSG00000247877.6|AC021086.1|lncRNA|chr5:100450934:100451097:-	0	-
#Partially deleted in new
chr5	1005038	1006623	ENSG00000272347.1|AC116351.2|lncRNA|chr5:1005038:1006623:+	0	+
#Deleted in new
chr5	100518529	100518611	ENSG00000247877.6|AC021086.1|lncRNA|chr5:100518529:100518611:-	0	-
#Deleted in new
chr5	100526305	100526349	ENSG00000247877.6|AC021086.1|lncRNA|chr5:100526305:100526349:-	0	-
#Deleted in new
chr5	100534079	100534152	ENSG00000247877.6|AC021086.1|lncRNA|chr5:100534079:100534152:-	0	-
#Deleted in new
chr5	100655439	100655475	ENSG00000250806.2|AC027315.1|lncRNA|chr5:100655439:100655475:-	0	-
#Deleted in new
chr5	100657818	100657970	ENSG00000250806.2|AC027315.1|lncRNA|chr5:100657818:100657970:-	0	-
#Deleted in new
chr5	102146314	102146572	ENSG00000248261.1|AC008948.1|lncRNA|chr5:102146314:102146572:+	0	+
#Deleted in new
chr5	102371781	102372123	ENSG00000205359.9|SLCO6A1|pc|chr5:102371781:102372123:-	0	-
#Deleted in new
chr5	102371787	102372126	ENSG00000205359.9|SLCO6A1|pc|chr5:102371787:102372126:-	0	-
#Deleted in new
chr5	102371944	102372071	ENSG00000205359.9|SLCO6A1|pc|chr5:102371944:102372071:-	0	-
#Deleted in new
chr5	102371944	102372123	ENSG00000205359.9|SLCO6A1|pc|chr5:102371944:102372123:-	0	-
#Deleted in new
chr5	102371945	102372071	ENSG00000205359.9|SLCO6A1|pc|chr5:102371945:102372071:-	0	-
#Deleted in new
chr5	102373336	102373429	ENSG00000205359.9|SLCO6A1|pc|chr5:102373336:102373429:-	0	-
#Deleted in new
chr5	102373336	102373494	ENSG00000205359.9|SLCO6A1|pc|chr5:102373336:102373494:-	0	-
#Deleted in new
chr5	10244433	10244500	ENSG00000150756.13|FAM173B|pc|chr5:10244433:10244500:-	0	-
#Deleted in new
chr5	10248324	10248495	ENSG00000248968.1|AC012640.1|lncRNA|chr5:10248324:10248495:+	0	+
#Deleted in new
chr5	102500540	102500826	ENSG00000249017.1|AC094108.1|lncRNA|chr5:102500540:102500826:+	0	+
#Deleted in new
chr5	102505268	102505332	ENSG00000249017.1|AC094108.1|lncRNA|chr5:102505268:102505332:+	0	+
#Deleted in new
chr5	102505427	102505668	ENSG00000249017.1|AC094108.1|lncRNA|chr5:102505427:102505668:+	0	+
#Deleted in new
chr5	102505427	102505670	ENSG00000249017.1|AC094108.1|lncRNA|chr5:102505427:102505670:+	0	+
#Deleted in new
chr5	102606095	102606197	ENSG00000247402.2|AC099487.1|lncRNA|chr5:102606095:102606197:+	0	+
#Deleted in new
chr5	102609155	102609766	ENSG00000250682.5|LINC00491|lncRNA|chr5:102609155:102609766:-	0	-
#Deleted in new
chr5	102609259	102609766	ENSG00000250682.5|LINC00491|lncRNA|chr5:102609259:102609766:-	0	-
#Deleted in new
chr5	102609390	102609766	ENSG00000250682.5|LINC00491|lncRNA|chr5:102609390:102609766:-	0	-
#Deleted in new
chr5	102609556	102609766	ENSG00000250682.5|LINC00491|lncRNA|chr5:102609556:102609766:-	0	-
#Deleted in new
chr5	102611892	102611955	ENSG00000250682.5|LINC00491|lncRNA|chr5:102611892:102611955:-	0	-
#Partially deleted in new
chr5	10261974	10262618	ENSG00000150753.11|CCT5|pc|chr5:10261974:10262618:+	0	+
#Partially deleted in new
chr5	10264596	10267146	ENSG00000271980.1|AC012640.4|lncRNA|chr5:10264596:10267146:-	0	-
#Partially deleted in new
chr5	10264655	10266412	ENSG00000150753.11|CCT5|pc|chr5:10264655:10266412:+	0	+
#Deleted in new
chr5	102671226	102671283	ENSG00000250682.5|LINC00491|lncRNA|chr5:102671226:102671283:-	0	-
#Deleted in new
chr5	102671226	102671307	ENSG00000250682.5|LINC00491|lncRNA|chr5:102671226:102671307:-	0	-
#Deleted in new
chr5	102671226	102671464	ENSG00000250682.5|LINC00491|lncRNA|chr5:102671226:102671464:-	0	-
#Deleted in new
chr5	102671226	102671559	ENSG00000250682.5|LINC00491|lncRNA|chr5:102671226:102671559:-	0	-
#Deleted in new
chr5	10269488	10269918	ENSG00000271715.1|AC012640.3|lncRNA|chr5:10269488:10269918:-	0	-
#Deleted in new
chr5	10275874	10276224	ENSG00000164237.8|CMBL|pc|chr5:10275874:10276224:-	0	-
#Partially deleted in new
chr5	10279276	10280632	ENSG00000164237.8|CMBL|pc|chr5:10279276:10280632:-	0	-
#Deleted in new
chr5	102873292	102873804	ENSG00000145730.20|PAM|pc|chr5:102873292:102873804:+	0	+
#Deleted in new
chr5	103102275	103102743	ENSG00000145723.16|GIN1|pc|chr5:103102275:103102743:-	0	-
#Deleted in new
chr5	103135992	103136114	ENSG00000145725.19|PPIP5K2|pc|chr5:103135992:103136114:+	0	+
#Deleted in new
chr5	103253327	103253519	ENSG00000248203.1|AC011362.1|lncRNA|chr5:103253327:103253519:-	0	-
#Deleted in new
chr5	103408940	103409387	ENSG00000250567.1|AC010406.1|lncRNA|chr5:103408940:103409387:-	0	-
#Deleted in new
chr5	103412403	103412511	ENSG00000250567.1|AC010406.1|lncRNA|chr5:103412403:103412511:-	0	-
#Deleted in new
chr5	10342812	10343131	ENSG00000280369.1|AC012640.5|lncRNA|chr5:10342812:10343131:+	0	+
#Deleted in new
chr5	103540942	103541031	ENSG00000248757.2|LINC02115|lncRNA|chr5:103540942:103541031:-	0	-
#Partially deleted in new
chr5	103541853	103541985	ENSG00000248757.2|LINC02115|lncRNA|chr5:103541853:103541985:-	0	-
#Partially deleted in new
chr5	103881618	103881964	ENSG00000283462.1|AC008505.1|lncRNA|chr5:103881618:103881964:-	0	-
#Deleted in new
chr5	104079910	104080124	ENSG00000251026.1|LINC02163|lncRNA|chr5:104079910:104080124:+	0	+
#Partially deleted in new
chr5	104080907	104081041	ENSG00000251026.1|LINC02163|lncRNA|chr5:104080907:104081041:+	0	+
#Deleted in new
chr5	104081879	104081947	ENSG00000251026.1|LINC02163|lncRNA|chr5:104081879:104081947:+	0	+
#Deleted in new
chr5	104104173	104104287	ENSG00000251026.1|LINC02163|lncRNA|chr5:104104173:104104287:+	0	+
#Deleted in new
chr5	104105359	104105403	ENSG00000251026.1|LINC02163|lncRNA|chr5:104105359:104105403:+	0	+
#Deleted in new
chr5	10413273	10413450	ENSG00000145495.15|MARCH6|pc|chr5:10413273:10413450:+	0	+
#Deleted in new
chr5	10421930	10422036	ENSG00000145495.15|MARCH6|pc|chr5:10421930:10422036:+	0	+
#Deleted in new
chr5	104383297	104383382	ENSG00000251574.6|AC099520.1|lncRNA|chr5:104383297:104383382:-	0	-
#Deleted in new
chr5	10441289	10441373	ENSG00000250600.1|ROPN1L-AS1|lncRNA|chr5:10441289:10441373:-	0	-
#Deleted in new
chr5	10441523	10442003	ENSG00000145491.11|ROPN1L|pc|chr5:10441523:10442003:+	0	+
#Deleted in new
chr5	10441687	10441792	ENSG00000250600.1|ROPN1L-AS1|lncRNA|chr5:10441687:10441792:-	0	-
#Deleted in new
chr5	10441953	10442003	ENSG00000145491.11|ROPN1L|pc|chr5:10441953:10442003:+	0	+
#Deleted in new
chr5	10471809	10472029	ENSG00000145491.11|ROPN1L|pc|chr5:10471809:10472029:+	0	+
#Deleted in new
chr5	104736760	104736915	ENSG00000251574.6|AC099520.1|lncRNA|chr5:104736760:104736915:-	0	-
#Deleted in new
chr5	104743691	104743854	ENSG00000251574.6|AC099520.1|lncRNA|chr5:104743691:104743854:-	0	-
#Deleted in new
chr5	104744034	104744191	ENSG00000251574.6|AC099520.1|lncRNA|chr5:104744034:104744191:-	0	-
#Deleted in new
chr5	104746540	104746609	ENSG00000251574.6|AC099520.1|lncRNA|chr5:104746540:104746609:-	0	-
#Deleted in new
chr5	104773612	104773660	ENSG00000251574.6|AC099520.1|lncRNA|chr5:104773612:104773660:-	0	-
#Deleted in new
chr5	104773612	104773696	ENSG00000251574.6|AC099520.1|lncRNA|chr5:104773612:104773696:-	0	-
#Deleted in new
chr5	104773612	104773784	ENSG00000251574.6|AC099520.1|lncRNA|chr5:104773612:104773784:-	0	-
#Deleted in new
chr5	104773612	104773791	ENSG00000251574.6|AC099520.1|lncRNA|chr5:104773612:104773791:-	0	-
#Deleted in new
chr5	104773640	104773740	ENSG00000253776.1|AC099520.2|lncRNA|chr5:104773640:104773740:+	0	+
#Deleted in new
chr5	104773732	104773822	ENSG00000251574.6|AC099520.1|lncRNA|chr5:104773732:104773822:-	0	-
#Deleted in new
chr5	10479370	10479417	ENSG00000246016.2|LINC01513|lncRNA|chr5:10479370:10479417:+	0	+
#Deleted in new
chr5	104799305	104799772	ENSG00000253776.1|AC099520.2|lncRNA|chr5:104799305:104799772:+	0	+
#Deleted in new
chr5	10481873	10482309	ENSG00000246016.2|LINC01513|lncRNA|chr5:10481873:10482309:+	0	+
#Deleted in new
chr5	104886857	104886975	ENSG00000251574.6|AC099520.1|lncRNA|chr5:104886857:104886975:-	0	-
#Deleted in new
chr5	10495273	10495313	ENSG00000249396.1|LINC02212|lncRNA|chr5:10495273:10495313:-	0	-
#Deleted in new
chr5	104975673	104975885	ENSG00000253584.1|AC091987.1|lncRNA|chr5:104975673:104975885:-	0	-
#Deleted in new
chr5	104979690	104979776	ENSG00000253584.1|AC091987.1|lncRNA|chr5:104979690:104979776:-	0	-
#Deleted in new
chr5	10501204	10502728	ENSG00000249396.1|LINC02212|lncRNA|chr5:10501204:10502728:-	0	-
#Deleted in new
chr5	10504995	10505524	ENSG00000249160.4|LINC02213|lncRNA|chr5:10504995:10505524:-	0	-
#Deleted in new
chr5	10505442	10505524	ENSG00000249160.4|LINC02213|lncRNA|chr5:10505442:10505524:-	0	-
#Deleted in new
chr5	10506468	10506575	ENSG00000249160.4|LINC02213|lncRNA|chr5:10506468:10506575:-	0	-
#Deleted in new
chr5	10509056	10509194	ENSG00000249160.4|LINC02213|lncRNA|chr5:10509056:10509194:-	0	-
#Partially deleted in new
chr5	10521755	10522084	ENSG00000249160.4|LINC02213|lncRNA|chr5:10521755:10522084:-	0	-
#Deleted in new
chr5	105246296	105246364	ENSG00000253584.1|AC091987.1|lncRNA|chr5:105246296:105246364:-	0	-
#Deleted in new
chr5	105392760	105392970	ENSG00000251574.6|AC099520.1|lncRNA|chr5:105392760:105392970:-	0	-
#Partially deleted in new
chr5	10541453	10543192	ENSG00000280017.1|AC112200.2|lncRNA|chr5:10541453:10543192:+	0	+
#Deleted in new
chr5	10627259	10627487	ENSG00000250106.1|ANKRD33B-AS1|lncRNA|chr5:10627259:10627487:-	0	-
#Deleted in new
chr5	10675316	10675575	ENSG00000279979.1|AC012629.4|lncRNA|chr5:10675316:10675575:-	0	-
#Partially deleted in new
chr5	10683095	10683571	ENSG00000112977.15|DAP|pc|chr5:10683095:10683571:-	0	-
#Deleted in new
chr5	106969883	106969951	ENSG00000251027.1|LINC01950|lncRNA|chr5:106969883:106969951:-	0	-
#Deleted in new
chr5	106980763	106980869	ENSG00000251027.1|LINC01950|lncRNA|chr5:106980763:106980869:-	0	-
#Deleted in new
chr5	107010939	107011014	ENSG00000251027.1|LINC01950|lncRNA|chr5:107010939:107011014:-	0	-
#Deleted in new
chr5	10767623	10767775	ENSG00000272324.5|AC012629.2|lncRNA|chr5:10767623:10767775:+	0	+
#Deleted in new
chr5	107708886	107708962	ENSG00000249959.5|AC024587.2|lncRNA|chr5:107708886:107708962:-	0	-
#Deleted in new
chr5	107710360	107710508	ENSG00000249959.5|AC024587.2|lncRNA|chr5:107710360:107710508:-	0	-
#Deleted in new
chr5	10775057	10775300	ENSG00000250576.1|AC012629.1|lncRNA|chr5:10775057:10775300:-	0	-
#Deleted in new
chr5	10776963	10777062	ENSG00000250576.1|AC012629.1|lncRNA|chr5:10776963:10777062:-	0	-
#Deleted in new
chr5	108782662	108782755	ENSG00000151422.12|FER|pc|chr5:108782662:108782755:+	0	+
#Deleted in new
chr5	108818040	108818260	ENSG00000250383.1|AC008871.1|lncRNA|chr5:108818040:108818260:-	0	-
#Deleted in new
chr5	108830612	108830790	ENSG00000250383.1|AC008871.1|lncRNA|chr5:108830612:108830790:-	0	-
#Deleted in new
chr5	108841830	108841868	ENSG00000151422.12|FER|pc|chr5:108841830:108841868:+	0	+
#Deleted in new
chr5	108842261	108843001	ENSG00000151422.12|FER|pc|chr5:108842261:108843001:+	0	+
#Deleted in new
chr5	109177516	109177629	ENSG00000151422.12|FER|pc|chr5:109177516:109177629:+	0	+
#Partially deleted in new
chr5	109237119	109238118	ENSG00000249476.1|AC008467.1|lncRNA|chr5:109237119:109238118:-	0	-
#Partially deleted in new
chr5	109319758	109320635	ENSG00000249476.1|AC008467.1|lncRNA|chr5:109319758:109320635:-	0	-
#Deleted in new
chr5	109390637	109390758	ENSG00000198961.9|PJA2|pc|chr5:109390637:109390758:-	0	-
#Deleted in new
chr5	109467352	109467952	ENSG00000251367.1|AC091917.3|lncRNA|chr5:109467352:109467952:+	0	+
#Deleted in new
chr5	109794174	109794237	ENSG00000112893.9|MAN2A1|pc|chr5:109794174:109794237:+	0	+
#Deleted in new
chr5	109883870	109883970	ENSG00000254106.1|LINC01848|lncRNA|chr5:109883870:109883970:+	0	+
#Deleted in new
chr5	110323233	110323530	ENSG00000186952.14|TMEM232|pc|chr5:110323233:110323530:-	0	-
#Partially deleted in new
chr5	110329726	110332925	ENSG00000186952.14|TMEM232|pc|chr5:110329726:110332925:-	0	-
#Deleted in new
chr5	110390415	110390640	ENSG00000186952.14|TMEM232|pc|chr5:110390415:110390640:-	0	-
#Partially deleted in new
chr5	110417677	110418179	ENSG00000186952.14|TMEM232|pc|chr5:110417677:110418179:-	0	-
#Deleted in new
chr5	110429887	110430101	ENSG00000186952.14|TMEM232|pc|chr5:110429887:110430101:-	0	-
#Deleted in new
chr5	110610502	110610600	ENSG00000186952.14|TMEM232|pc|chr5:110610502:110610600:-	0	-
#Deleted in new
chr5	110617893	110617983	ENSG00000186952.14|TMEM232|pc|chr5:110617893:110617983:-	0	-
#Deleted in new
chr5	110667694	110667729	ENSG00000186952.14|TMEM232|pc|chr5:110667694:110667729:-	0	-
#Deleted in new
chr5	110734902	110735015	ENSG00000186952.14|TMEM232|pc|chr5:110734902:110735015:-	0	-
#Partially deleted in new
chr5	110738721	110738918	ENSG00000186952.14|TMEM232|pc|chr5:110738721:110738918:-	0	-
#Partially deleted in new
chr5	110753301	110755521	ENSG00000164209.16|SLC25A46|pc|chr5:110753301:110755521:+	0	+
#Deleted in new
chr5	111004679	111004752	ENSG00000248428.1|AC010395.1|lncRNA|chr5:111004679:111004752:-	0	-
#Deleted in new
chr5	111004858	111005022	ENSG00000248428.1|AC010395.1|lncRNA|chr5:111004858:111005022:-	0	-
#Deleted in new
chr5	111007375	111007471	ENSG00000248428.1|AC010395.1|lncRNA|chr5:111007375:111007471:-	0	-
#Deleted in new
chr5	111008873	111008899	ENSG00000248428.1|AC010395.1|lncRNA|chr5:111008873:111008899:-	0	-
#Deleted in new
chr5	111084357	111084523	ENSG00000253613.2|AC008572.1|lncRNA|chr5:111084357:111084523:-	0	-
#Deleted in new
chr5	111092069	111092115	ENSG00000253613.2|AC008572.1|lncRNA|chr5:111092069:111092115:-	0	-
#Deleted in new
chr5	111282892	111283036	ENSG00000248268.1|AC010275.1|lncRNA|chr5:111282892:111283036:-	0	-
#Partially deleted in new
chr5	111302210	111302567	ENSG00000248268.1|AC010275.1|lncRNA|chr5:111302210:111302567:-	0	-
#Deleted in new
chr5	111416505	111416547	ENSG00000152495.10|CAMK4|pc|chr5:111416505:111416547:+	0	+
#Deleted in new
chr5	111505014	111505043	ENSG00000164211.12|STARD4|pc|chr5:111505014:111505043:-	0	-
#Deleted in new
chr5	111662620	111665741	ENSG00000134986.13|NREP|pc|chr5:111662620:111665741:-	0	-
#Deleted in new
chr5	111727944	111728066	ENSG00000246859.2|STARD4-AS1|lncRNA|chr5:111727944:111728066:+	0	+
#Deleted in new
chr5	111912507	111912720	ENSG00000250095.5|NREP-AS1|lncRNA|chr5:111912507:111912720:+	0	+
#Deleted in new
chr5	111940036	111940134	ENSG00000250095.5|NREP-AS1|lncRNA|chr5:111940036:111940134:+	0	+
#Deleted in new
chr5	111940052	111940134	ENSG00000250095.5|NREP-AS1|lncRNA|chr5:111940052:111940134:+	0	+
#Deleted in new
chr5	111969451	111969560	ENSG00000250095.5|NREP-AS1|lncRNA|chr5:111969451:111969560:+	0	+
#Deleted in new
chr5	111974374	111974506	ENSG00000250095.5|NREP-AS1|lncRNA|chr5:111974374:111974506:+	0	+
#Deleted in new
chr5	111975273	111975378	ENSG00000134986.13|NREP|pc|chr5:111975273:111975378:-	0	-
#Deleted in new
chr5	112145880	112145998	ENSG00000129595.12|EPB41L4A|pc|chr5:112145880:112145998:-	0	-
#Deleted in new
chr5	112160891	112161295	ENSG00000224032.6|EPB41L4A-AS1|lncRNA|chr5:112160891:112161295:+	0	+
#Deleted in new
chr5	112160933	112160991	ENSG00000224032.6|EPB41L4A-AS1|lncRNA|chr5:112160933:112160991:+	0	+
#Partially deleted in new
chr5	112162150	112164276	ENSG00000224032.6|EPB41L4A-AS1|lncRNA|chr5:112162150:112164276:+	0	+
#Partially deleted in new
chr5	112162617	112165118	ENSG00000129595.12|EPB41L4A|pc|chr5:112162617:112165118:-	0	-
#Partially deleted in new
chr5	112162620	112165118	ENSG00000129595.12|EPB41L4A|pc|chr5:112162620:112165118:-	0	-
#Deleted in new
chr5	112173569	112173688	ENSG00000250882.1|AC010261.1|lncRNA|chr5:112173569:112173688:+	0	+
#Deleted in new
chr5	112206928	112207063	ENSG00000251187.5|AC010261.2|lncRNA|chr5:112206928:112207063:+	0	+
#Deleted in new
chr5	112392722	112392784	ENSG00000129595.12|EPB41L4A|pc|chr5:112392722:112392784:-	0	-
#Deleted in new
chr5	112629096	112629222	ENSG00000250358.5|LINC02200|lncRNA|chr5:112629096:112629222:+	0	+
#Deleted in new
chr5	112632003	112632100	ENSG00000250358.5|LINC02200|lncRNA|chr5:112632003:112632100:+	0	+
#Deleted in new
chr5	112810125	112810311	ENSG00000134982.16|APC|pc|chr5:112810125:112810311:+	0	+
#Partially deleted in new
chr5	112828855	112829954	ENSG00000134982.16|APC|pc|chr5:112828855:112829954:+	0	+
#Deleted in new
chr5	112856648	112856673	ENSG00000258864.1|AC008575.1|pc|chr5:112856648:112856673:+	0	+
#Partially deleted in new
chr5	112867403	112869788	ENSG00000153037.13|SRP19|pc|chr5:112867403:112869788:+	0	+
#Deleted in new
chr5	112881956	112882049	ENSG00000272869.5|AC008575.2|pc|chr5:112881956:112882049:+	0	+
#Deleted in new
chr5	112891602	112891637	ENSG00000272869.5|AC008575.2|pc|chr5:112891602:112891637:+	0	+
#Deleted in new
chr5	112893332	112894001	ENSG00000270067.1|AC008536.1|lncRNA|chr5:112893332:112894001:+	0	+
#Deleted in new
chr5	112898022	112898371	ENSG00000272389.1|AC008536.2|lncRNA|chr5:112898022:112898371:+	0	+
#Deleted in new
chr5	112983973	112984651	ENSG00000172795.15|DCP2|pc|chr5:112983973:112984651:+	0	+
#Deleted in new
chr5	113048562	113048727	ENSG00000171444.17|MCC|pc|chr5:113048562:113048727:-	0	-
#Deleted in new
chr5	113204512	113204576	ENSG00000171444.17|MCC|pc|chr5:113204512:113204576:-	0	-
#Partially deleted in new
chr5	113323027	113323273	ENSG00000232633.4|AC079465.1|lncRNA|chr5:113323027:113323273:+	0	+
#Partially deleted in new
chr5	113428659	113428779	ENSG00000232633.4|AC079465.1|lncRNA|chr5:113428659:113428779:+	0	+
#Deleted in new
chr5	114433529	114433929	ENSG00000080709.14|KCNN2|pc|chr5:114433529:114433929:+	0	+
#Deleted in new
chr5	114433577	114433929	ENSG00000080709.14|KCNN2|pc|chr5:114433577:114433929:+	0	+
#Deleted in new
chr5	114668342	114668406	ENSG00000246316.7|AC010230.1|lncRNA|chr5:114668342:114668406:-	0	-
#Deleted in new
chr5	114668342	114668410	ENSG00000246316.7|AC010230.1|lncRNA|chr5:114668342:114668410:-	0	-
#Partially deleted in new
chr5	115087891	115088475	ENSG00000250242.1|AC094104.1|lncRNA|chr5:115087891:115088475:-	0	-
#Deleted in new
chr5	115153704	115153811	ENSG00000152503.9|TRIM36|pc|chr5:115153704:115153811:-	0	-
#Deleted in new
chr5	115280351	115280480	ENSG00000164221.12|CCDC112|pc|chr5:115280351:115280480:-	0	-
#Deleted in new
chr5	115603044	115603156	ENSG00000249249.1|AC010226.1|lncRNA|chr5:115603044:115603156:+	0	+
#Deleted in new
chr5	115603045	115603156	ENSG00000249249.1|AC010226.1|lncRNA|chr5:115603045:115603156:+	0	+
#Deleted in new
chr5	115603045	115603205	ENSG00000249249.1|AC010226.1|lncRNA|chr5:115603045:115603205:+	0	+
#Deleted in new
chr5	115619138	115619199	ENSG00000249249.1|AC010226.1|lncRNA|chr5:115619138:115619199:+	0	+
#Deleted in new
chr5	115632855	115632992	ENSG00000134970.13|TMED7|pc|chr5:115632855:115632992:-	0	-
#Deleted in new
chr5	115691461	115692167	ENSG00000249021.1|AC008549.2|lncRNA|chr5:115691461:115692167:-	0	-
#Deleted in new
chr5	115755643	115756286	ENSG00000248709.1|AC008549.1|lncRNA|chr5:115755643:115756286:+	0	+
#Partially deleted in new
chr5	115832601	115834352	ENSG00000145782.12|ATG12|pc|chr5:115832601:115834352:-	0	-
#Deleted in new
chr5	115834917	115835161	ENSG00000145782.12|ATG12|pc|chr5:115834917:115835161:-	0	-
#Deleted in new
chr5	115852978	115853014	ENSG00000177879.15|AP3S1|pc|chr5:115852978:115853014:+	0	+
#Deleted in new
chr5	115898648	115898789	ENSG00000177879.15|AP3S1|pc|chr5:115898648:115898789:+	0	+
#Deleted in new
chr5	115995376	115995562	ENSG00000172901.19|LVRN|pc|chr5:115995376:115995562:+	0	+
#Deleted in new
chr5	115995396	115995562	ENSG00000172901.19|LVRN|pc|chr5:115995396:115995562:+	0	+
#Deleted in new
chr5	116019906	116020115	ENSG00000172901.19|LVRN|pc|chr5:116019906:116020115:+	0	+
#Partially deleted in new
chr5	116021026	116021752	ENSG00000172901.19|LVRN|pc|chr5:116021026:116021752:+	0	+
#Deleted in new
chr5	116023333	116023649	ENSG00000172901.19|LVRN|pc|chr5:116023333:116023649:+	0	+
#Deleted in new
chr5	116032323	116032505	ENSG00000268223.4|ARL14EPL|pc|chr5:116032323:116032505:+	0	+
#Deleted in new
chr5	116412642	116412762	ENSG00000145781.8|COMMD10|pc|chr5:116412642:116412762:+	0	+
#Deleted in new
chr5	116508044	116508276	ENSG00000248445.5|SEMA6A-AS1|lncRNA|chr5:116508044:116508276:+	0	+
#Partially deleted in new
chr5	116742990	116743388	ENSG00000251311.1|LINC02214|lncRNA|chr5:116742990:116743388:-	0	-
#Deleted in new
chr5	116762128	116762209	ENSG00000251311.1|LINC02214|lncRNA|chr5:116762128:116762209:-	0	-
#Deleted in new
chr5	116820992	116821137	ENSG00000249150.1|AC010267.1|lncRNA|chr5:116820992:116821137:-	0	-
#Deleted in new
chr5	1173140	1173478	ENSG00000249201.2|CTD-3080P12.3|lncRNA|chr5:1173140:1173478:-	0	-
#Deleted in new
chr5	117437523	117437619	ENSG00000248663.6|LINC00992|lncRNA|chr5:117437523:117437619:+	0	+
#Deleted in new
chr5	1174523	1174630	ENSG00000249201.2|CTD-3080P12.3|lncRNA|chr5:1174523:1174630:-	0	-
#Deleted in new
chr5	117455262	117455454	ENSG00000248663.6|LINC00992|lncRNA|chr5:117455262:117455454:+	0	+
#Deleted in new
chr5	117478980	117479368	ENSG00000248663.6|LINC00992|lncRNA|chr5:117478980:117479368:+	0	+
#Deleted in new
chr5	1175128	1175688	ENSG00000249201.2|CTD-3080P12.3|lncRNA|chr5:1175128:1175688:-	0	-
#Deleted in new
chr5	1175396	1175688	ENSG00000249201.2|CTD-3080P12.3|lncRNA|chr5:1175396:1175688:-	0	-
#Deleted in new
chr5	1175956	1176544	ENSG00000249201.2|CTD-3080P12.3|lncRNA|chr5:1175956:1176544:-	0	-
#Deleted in new
chr5	1175960	1176544	ENSG00000249201.2|CTD-3080P12.3|lncRNA|chr5:1175960:1176544:-	0	-
#Deleted in new
chr5	1175970	1176544	ENSG00000249201.2|CTD-3080P12.3|lncRNA|chr5:1175970:1176544:-	0	-
#Deleted in new
chr5	1178437	1178546	ENSG00000249201.2|CTD-3080P12.3|lncRNA|chr5:1178437:1178546:-	0	-
#Deleted in new
chr5	1178437	1178594	ENSG00000249201.2|CTD-3080P12.3|lncRNA|chr5:1178437:1178594:-	0	-
#Deleted in new
chr5	1178437	1178605	ENSG00000249201.2|CTD-3080P12.3|lncRNA|chr5:1178437:1178605:-	0	-
#Deleted in new
chr5	117925007	117925131	ENSG00000249797.1|LINC02147|lncRNA|chr5:117925007:117925131:+	0	+
#Deleted in new
chr5	118206719	118206971	ENSG00000249797.1|LINC02147|lncRNA|chr5:118206719:118206971:+	0	+
#Deleted in new
chr5	118282574	118282727	ENSG00000250427.1|LINC02148|lncRNA|chr5:118282574:118282727:+	0	+
#Deleted in new
chr5	118283712	118284782	ENSG00000250427.1|LINC02148|lncRNA|chr5:118283712:118284782:+	0	+
#Deleted in new
chr5	118468155	118468434	ENSG00000250891.1|LINC02208|lncRNA|chr5:118468155:118468434:-	0	-
#Deleted in new
chr5	118469080	118469148	ENSG00000250891.1|LINC02208|lncRNA|chr5:118469080:118469148:-	0	-
#Deleted in new
chr5	118472062	118472189	ENSG00000250891.1|LINC02208|lncRNA|chr5:118472062:118472189:-	0	-
#Deleted in new
chr5	118472848	118472906	ENSG00000250891.1|LINC02208|lncRNA|chr5:118472848:118472906:-	0	-
#Partially deleted in new
chr5	118545857	118546149	ENSG00000250891.1|LINC02208|lncRNA|chr5:118545857:118546149:-	0	-
#Partially deleted in new
chr5	118577039	118577194	ENSG00000249551.1|LINC02216|lncRNA|chr5:118577039:118577194:+	0	+
#Deleted in new
chr5	118579653	118579794	ENSG00000249551.1|LINC02216|lncRNA|chr5:118579653:118579794:+	0	+
#Partially deleted in new
chr5	118614292	118614351	ENSG00000249128.1|LINC02215|lncRNA|chr5:118614292:118614351:+	0	+
#Partially deleted in new
chr5	118988129	118988220	ENSG00000169570.9|DTWD2|pc|chr5:118988129:118988220:-	0	-
#Deleted in new
chr5	119006346	119006630	ENSG00000249494.5|AC008629.1|lncRNA|chr5:119006346:119006630:-	0	-
#Deleted in new
chr5	119006757	119006861	ENSG00000249494.5|AC008629.1|lncRNA|chr5:119006757:119006861:-	0	-
#Deleted in new
chr5	119007073	119007205	ENSG00000249494.5|AC008629.1|lncRNA|chr5:119007073:119007205:-	0	-
#Partially deleted in new
chr5	119020076	119020240	ENSG00000249494.5|AC008629.1|lncRNA|chr5:119020076:119020240:-	0	-
#Deleted in new
chr5	119034269	119034346	ENSG00000249494.5|AC008629.1|lncRNA|chr5:119034269:119034346:-	0	-
#Deleted in new
chr5	119044869	119044978	ENSG00000172869.14|DMXL1|pc|chr5:119044869:119044978:+	0	+
#Deleted in new
chr5	119081573	119081697	ENSG00000172869.14|DMXL1|pc|chr5:119081573:119081697:+	0	+
#Deleted in new
chr5	119104127	119104280	ENSG00000172869.14|DMXL1|pc|chr5:119104127:119104280:+	0	+
#Partially deleted in new
chr5	119316184	119316302	ENSG00000145779.7|TNFAIP8|pc|chr5:119316184:119316302:+	0	+
#Partially deleted in new
chr5	119355312	119355392	ENSG00000145779.7|TNFAIP8|pc|chr5:119355312:119355392:+	0	+
#Deleted in new
chr5	119477797	119477894	ENSG00000133835.14|HSD17B4|pc|chr5:119477797:119477894:+	0	+
#Deleted in new
chr5	119495715	119495813	ENSG00000133835.14|HSD17B4|pc|chr5:119495715:119495813:+	0	+
#Deleted in new
chr5	119509429	119509494	ENSG00000133835.14|HSD17B4|pc|chr5:119509429:119509494:+	0	+
#Deleted in new
chr5	119625963	119626070	ENSG00000133835.14|HSD17B4|pc|chr5:119625963:119626070:+	0	+
#Partially deleted in new
chr5	119635699	119637199	ENSG00000133835.14|HSD17B4|pc|chr5:119635699:119637199:+	0	+
#Deleted in new
chr5	120245447	120245633	ENSG00000251293.1|AC008574.1|lncRNA|chr5:120245447:120245633:-	0	-
#Deleted in new
chr5	120345906	120346340	ENSG00000261036.1|AC113418.1|lncRNA|chr5:120345906:120346340:-	0	-
#Deleted in new
chr5	120404754	120404837	ENSG00000261036.1|AC113418.1|lncRNA|chr5:120404754:120404837:-	0	-
#Deleted in new
chr5	120531463	120531562	ENSG00000184838.14|PRR16|pc|chr5:120531463:120531562:+	0	+
#Deleted in new
chr5	121199703	121199808	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121199703:121199808:+	0	+
#Deleted in new
chr5	121205007	121205130	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121205007:121205130:+	0	+
#Partially deleted in new
chr5	121313960	121314204	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121313960:121314204:+	0	+
#Partially deleted in new
chr5	121313976	121314204	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121313976:121314204:+	0	+
#Deleted in new
chr5	121320879	121320986	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121320879:121320986:+	0	+
#Deleted in new
chr5	121322549	121322607	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121322549:121322607:+	0	+
#Deleted in new
chr5	121322553	121322607	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121322553:121322607:+	0	+
#Deleted in new
chr5	121322586	121322607	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121322586:121322607:+	0	+
#Deleted in new
chr5	121324040	121324070	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121324040:121324070:+	0	+
#Deleted in new
chr5	121325421	121325480	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121325421:121325480:+	0	+
#Partially deleted in new
chr5	121325421	121325956	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121325421:121325956:+	0	+
#Partially deleted in new
chr5	121325421	121326098	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121325421:121326098:+	0	+
#Deleted in new
chr5	121325426	121325479	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121325426:121325479:+	0	+
#Deleted in new
chr5	121347692	121347866	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121347692:121347866:+	0	+
#Deleted in new
chr5	121349985	121350272	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121349985:121350272:+	0	+
#Deleted in new
chr5	121349985	121350450	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121349985:121350450:+	0	+
#Deleted in new
chr5	121356805	121357398	ENSG00000229855.8|AC008568.1|lncRNA|chr5:121356805:121357398:+	0	+
#Deleted in new
chr5	121363001	121365314	ENSG00000279860.1|AC008568.2|lncRNA|chr5:121363001:121365314:+	0	+
#Deleted in new
chr5	122069960	122069964	ENSG00000113083.13|LOX|pc|chr5:122069960:122069964:-	0	-
#Partially deleted in new
chr5	122128761	122129259	ENSG00000247311.2|AC010255.1|lncRNA|chr5:122128761:122129259:-	0	-
#Deleted in new
chr5	122162221	122162457	ENSG00000250803.6|AC010255.3|pc|chr5:122162221:122162457:+	0	+
#Deleted in new
chr5	122162975	122163318	ENSG00000250803.6|AC010255.3|pc|chr5:122162975:122163318:+	0	+
#Deleted in new
chr5	122336787	122336904	ENSG00000064692.18|SNCAIP|pc|chr5:122336787:122336904:+	0	+
#Deleted in new
chr5	122383469	122383568	ENSG00000249916.1|AC119150.1|lncRNA|chr5:122383469:122383568:-	0	-
#Deleted in new
chr5	122468983	122469059	ENSG00000250328.5|MGC32805|lncRNA|chr5:122468983:122469059:-	0	-
#Deleted in new
chr5	122468983	122469067	ENSG00000250328.5|MGC32805|lncRNA|chr5:122468983:122469067:-	0	-
#Deleted in new
chr5	122476787	122477090	ENSG00000250328.5|MGC32805|lncRNA|chr5:122476787:122477090:-	0	-
#Deleted in new
chr5	122478585	122478815	ENSG00000250328.5|MGC32805|lncRNA|chr5:122478585:122478815:-	0	-
#Deleted in new
chr5	122641132	122641237	ENSG00000251538.5|LINC02201|lncRNA|chr5:122641132:122641237:-	0	-
#Deleted in new
chr5	122697170	122697342	ENSG00000251538.5|LINC02201|lncRNA|chr5:122697170:122697342:-	0	-
#Deleted in new
chr5	122705007	122705069	ENSG00000251538.5|LINC02201|lncRNA|chr5:122705007:122705069:-	0	-
#Deleted in new
chr5	122705425	122705469	ENSG00000251538.5|LINC02201|lncRNA|chr5:122705425:122705469:-	0	-
#Deleted in new
chr5	122725945	122726066	ENSG00000251538.5|LINC02201|lncRNA|chr5:122725945:122726066:-	0	-
#Deleted in new
chr5	122728341	122728399	ENSG00000251538.5|LINC02201|lncRNA|chr5:122728341:122728399:-	0	-
#Deleted in new
chr5	122730488	122730559	ENSG00000251538.5|LINC02201|lncRNA|chr5:122730488:122730559:-	0	-
#Deleted in new
chr5	122730488	122730685	ENSG00000251538.5|LINC02201|lncRNA|chr5:122730488:122730685:-	0	-
#Partially deleted in new
chr5	122808276	122808711	ENSG00000205302.6|SNX2|pc|chr5:122808276:122808711:+	0	+
#Deleted in new
chr5	122843438	122843615	ENSG00000064652.10|SNX24|pc|chr5:122843438:122843615:+	0	+
#Deleted in new
chr5	122853673	122853767	ENSG00000064652.10|SNX24|pc|chr5:122853673:122853767:+	0	+
#Deleted in new
chr5	122891026	122891125	ENSG00000064652.10|SNX24|pc|chr5:122891026:122891125:+	0	+
#Deleted in new
chr5	123022306	123022427	ENSG00000064652.10|SNX24|pc|chr5:123022306:123022427:+	0	+
#Deleted in new
chr5	123054462	123054667	ENSG00000249996.1|AC106786.2|lncRNA|chr5:123054462:123054667:+	0	+
#Deleted in new
chr5	123358251	123358445	ENSG00000168944.15|CEP120|pc|chr5:123358251:123358445:-	0	-
#Deleted in new
chr5	123403216	123403344	ENSG00000168944.15|CEP120|pc|chr5:123403216:123403344:-	0	-
#Deleted in new
chr5	123403693	123403740	ENSG00000168944.15|CEP120|pc|chr5:123403693:123403740:-	0	-
#Deleted in new
chr5	124062417	124062510	ENSG00000253807.5|LINC01170|lncRNA|chr5:124062417:124062510:-	0	-
#Deleted in new
chr5	124306229	124306291	ENSG00000253807.5|LINC01170|lncRNA|chr5:124306229:124306291:-	0	-
#Deleted in new
chr5	124314316	124314378	ENSG00000253807.5|LINC01170|lncRNA|chr5:124314316:124314378:-	0	-
#Deleted in new
chr5	124386228	124386273	ENSG00000253807.5|LINC01170|lncRNA|chr5:124386228:124386273:-	0	-
#Deleted in new
chr5	124536198	124536348	ENSG00000248296.1|AC025465.1|lncRNA|chr5:124536198:124536348:-	0	-
#Deleted in new
chr5	124708714	124708767	ENSG00000249112.1|AC112196.1|lncRNA|chr5:124708714:124708767:+	0	+
#Deleted in new
chr5	125036830	125036865	ENSG00000250411.1|AC109458.2|lncRNA|chr5:125036830:125036865:+	0	+
#Partially deleted in new
chr5	1253146	1253831	ENSG00000164362.18|TERT|pc|chr5:1253146:1253831:-	0	-
#Partially deleted in new
chr5	1253166	1253831	ENSG00000164362.18|TERT|pc|chr5:1253166:1253831:-	0	-
#Deleted in new
chr5	125498775	125498956	ENSG00000260192.1|LINC02240|lncRNA|chr5:125498775:125498956:+	0	+
#Deleted in new
chr5	125519527	125519595	ENSG00000260192.1|LINC02240|lncRNA|chr5:125519527:125519595:+	0	+
#Deleted in new
chr5	12553889	12554038	ENSG00000248783.1|AC106771.1|lncRNA|chr5:12553889:12554038:-	0	-
#Deleted in new
chr5	12571815	12571904	ENSG00000248783.1|AC106771.1|lncRNA|chr5:12571815:12571904:-	0	-
#Deleted in new
chr5	12574503	12574637	ENSG00000248783.1|AC106771.1|lncRNA|chr5:12574503:12574637:-	0	-
#Deleted in new
chr5	12574856	12575052	ENSG00000248131.5|LINC01194|lncRNA|chr5:12574856:12575052:+	0	+
#Deleted in new
chr5	12595696	12595778	ENSG00000248131.5|LINC01194|lncRNA|chr5:12595696:12595778:+	0	+
#Deleted in new
chr5	126076799	126077120	ENSG00000248752.1|AC010235.1|lncRNA|chr5:126076799:126077120:-	0	-
#Deleted in new
chr5	126193076	126193126	ENSG00000248107.1|LINC02039|lncRNA|chr5:126193076:126193126:+	0	+
#Deleted in new
chr5	126193599	126193850	ENSG00000248107.1|LINC02039|lncRNA|chr5:126193599:126193850:+	0	+
#Deleted in new
chr5	126279730	126279801	ENSG00000248752.1|AC010235.1|lncRNA|chr5:126279730:126279801:-	0	-
#Deleted in new
chr5	126445480	126445590	ENSG00000155324.9|GRAMD2B|pc|chr5:126445480:126445590:+	0	+
#Deleted in new
chr5	126445480	126445611	ENSG00000155324.9|GRAMD2B|pc|chr5:126445480:126445611:+	0	+
#Deleted in new
chr5	126496268	126496494	ENSG00000155324.9|GRAMD2B|pc|chr5:126496268:126496494:+	0	+
#Partially deleted in new
chr5	126541840	126545019	ENSG00000164904.17|ALDH7A1|pc|chr5:126541840:126545019:-	0	-
#Deleted in new
chr5	12654646	12655687	ENSG00000248131.5|LINC01194|lncRNA|chr5:12654646:12655687:+	0	+
#Partially deleted in new
chr5	126561082	126562422	ENSG00000164904.17|ALDH7A1|pc|chr5:126561082:126562422:-	0	-
#Deleted in new
chr5	126580046	126580090	ENSG00000164904.17|ALDH7A1|pc|chr5:126580046:126580090:-	0	-
#Deleted in new
chr5	126581188	126582149	ENSG00000164904.17|ALDH7A1|pc|chr5:126581188:126582149:-	0	-
#Deleted in new
chr5	126582104	126582149	ENSG00000164904.17|ALDH7A1|pc|chr5:126582104:126582149:-	0	-
#Partially deleted in new
chr5	126586126	126589032	ENSG00000164904.17|ALDH7A1|pc|chr5:126586126:126589032:-	0	-
#Partially deleted in new
chr5	126624574	126627252	ENSG00000164902.13|PHAX|pc|chr5:126624574:126627252:+	0	+
#Partially deleted in new
chr5	126777378	126777406	ENSG00000113368.11|LMNB1|pc|chr5:126777378:126777406:+	0	+
#Deleted in new
chr5	126946294	126946364	ENSG00000173926.5|MARCH3|pc|chr5:126946294:126946364:-	0	-
#Partially deleted in new
chr5	127047526	127047915	ENSG00000164241.13|C5orf63|pc|chr5:127047526:127047915:-	0	-
#Deleted in new
chr5	127056396	127056506	ENSG00000164241.13|C5orf63|pc|chr5:127056396:127056506:-	0	-
#Deleted in new
chr5	12711197	12711299	ENSG00000248131.5|LINC01194|lncRNA|chr5:12711197:12711299:+	0	+
#Deleted in new
chr5	127215158	127215198	ENSG00000283897.1|AC011416.4|lncRNA|chr5:127215158:127215198:-	0	-
#Partially deleted in new
chr5	127229683	127229809	ENSG00000283897.1|AC011416.4|lncRNA|chr5:127229683:127229809:-	0	-
#Deleted in new
chr5	127229714	127229754	ENSG00000283897.1|AC011416.4|lncRNA|chr5:127229714:127229754:-	0	-
#Deleted in new
chr5	127229714	127229772	ENSG00000283897.1|AC011416.4|lncRNA|chr5:127229714:127229772:-	0	-
#Partially deleted in new
chr5	127409591	127409888	ENSG00000145794.16|MEGF10|pc|chr5:127409591:127409888:+	0	+
#Partially deleted in new
chr5	127444412	127444787	ENSG00000145794.16|MEGF10|pc|chr5:127444412:127444787:+	0	+
#Deleted in new
chr5	12759358	12759648	ENSG00000248131.5|LINC01194|lncRNA|chr5:12759358:12759648:+	0	+
#Deleted in new
chr5	127663865	127664029	ENSG00000248799.1|AC022118.1|lncRNA|chr5:127663865:127664029:-	0	-
#Deleted in new
chr5	127739537	127739611	ENSG00000230561.4|CCDC192|pc|chr5:127739537:127739611:+	0	+
#Deleted in new
chr5	127956803	127956921	ENSG00000245937.7|LINC01184|lncRNA|chr5:127956803:127956921:-	0	-
#Partially deleted in new
chr5	127965887	127966928	ENSG00000245937.7|LINC01184|lncRNA|chr5:127965887:127966928:-	0	-
#Deleted in new
chr5	127966548	127966928	ENSG00000245937.7|LINC01184|lncRNA|chr5:127966548:127966928:-	0	-
#Deleted in new
chr5	127966672	127966928	ENSG00000245937.7|LINC01184|lncRNA|chr5:127966672:127966928:-	0	-
#Deleted in new
chr5	127966734	127966928	ENSG00000245937.7|LINC01184|lncRNA|chr5:127966734:127966928:-	0	-
#Deleted in new
chr5	12804203	12804363	ENSG00000248131.5|LINC01194|lncRNA|chr5:12804203:12804363:+	0	+
#Deleted in new
chr5	128076946	128077093	ENSG00000245937.7|LINC01184|lncRNA|chr5:128076946:128077093:-	0	-
#Duplicated in new
chr5	1282428	1283010	ENSG00000164362.18|TERT|pc|chr5:1282428:1283010:-	0	-
#Deleted in new
chr5	128542834	128542884	ENSG00000138829.11|FBN2|pc|chr5:128542834:128542884:-	0	-
#Deleted in new
chr5	128640361	128640411	ENSG00000138829.11|FBN2|pc|chr5:128640361:128640411:-	0	-
#Deleted in new
chr5	128659098	128659185	ENSG00000138829.11|FBN2|pc|chr5:128659098:128659185:-	0	-
#Deleted in new
chr5	128742436	128742829	ENSG00000248634.1|AC008588.1|lncRNA|chr5:128742436:128742829:+	0	+
#Deleted in new
chr5	128845579	128845700	ENSG00000113396.12|SLC27A6|pc|chr5:128845579:128845700:+	0	+
#Deleted in new
chr5	12914067	12914171	ENSG00000248457.1|LINC02220|lncRNA|chr5:12914067:12914171:-	0	-
#Deleted in new
chr5	129762492	129762669	ENSG00000251680.5|AC008591.1|lncRNA|chr5:129762492:129762669:-	0	-
#Deleted in new
chr5	129762506	129762669	ENSG00000251680.5|AC008591.1|lncRNA|chr5:129762506:129762669:-	0	-
#Deleted in new
chr5	129780327	129780481	ENSG00000251680.5|AC008591.1|lncRNA|chr5:129780327:129780481:-	0	-
#Partially deleted in new
chr5	130052083	130052171	ENSG00000198108.3|CHSY3|pc|chr5:130052083:130052171:+	0	+
#Deleted in new
chr5	13032010	13032075	ENSG00000248457.1|LINC02220|lncRNA|chr5:13032010:13032075:-	0	-
#Deleted in new
chr5	13032785	13032886	ENSG00000248457.1|LINC02220|lncRNA|chr5:13032785:13032886:-	0	-
#Deleted in new
chr5	131160655	131160844	ENSG00000169567.11|HINT1|pc|chr5:131160655:131160844:-	0	-
#Deleted in new
chr5	131160655	131160884	ENSG00000169567.11|HINT1|pc|chr5:131160655:131160884:-	0	-
#Deleted in new
chr5	131162110	131162477	ENSG00000169567.11|HINT1|pc|chr5:131162110:131162477:-	0	-
#Deleted in new
chr5	131162361	131162477	ENSG00000169567.11|HINT1|pc|chr5:131162361:131162477:-	0	-
#Deleted in new
chr5	131162477	131162503	ENSG00000169567.11|HINT1|pc|chr5:131162477:131162503:-	0	-
#Deleted in new
chr5	131171605	131171735	ENSG00000169567.11|HINT1|pc|chr5:131171605:131171735:-	0	-
#Split in new
chr5	131199530	131205426	ENSG00000186687.15|LYRM7|pc|chr5:131199530:131205426:+	0	+
#Deleted in new
chr5	131202639	131202813	ENSG00000186687.15|LYRM7|pc|chr5:131202639:131202813:+	0	+
#Deleted in new
chr5	131203590	131203701	ENSG00000186687.15|LYRM7|pc|chr5:131203590:131203701:+	0	+
#Deleted in new
chr5	131245492	131245599	ENSG00000158985.13|CDC42SE2|pc|chr5:131245492:131245599:+	0	+
#Partially deleted in new
chr5	131255094	131255583	ENSG00000158985.13|CDC42SE2|pc|chr5:131255094:131255583:+	0	+
#Deleted in new
chr5	131263665	131263900	ENSG00000158985.13|CDC42SE2|pc|chr5:131263665:131263900:+	0	+
#Deleted in new
chr5	131354650	131354769	ENSG00000158985.13|CDC42SE2|pc|chr5:131354650:131354769:+	0	+
#Deleted in new
chr5	131396405	131396660	ENSG00000158985.13|CDC42SE2|pc|chr5:131396405:131396660:+	0	+
#Deleted in new
chr5	131398208	131398445	ENSG00000158985.13|CDC42SE2|pc|chr5:131398208:131398445:+	0	+
#Deleted in new
chr5	131398208	131398446	ENSG00000158985.13|CDC42SE2|pc|chr5:131398208:131398446:+	0	+
#Deleted in new
chr5	131398208	131398447	ENSG00000158985.13|CDC42SE2|pc|chr5:131398208:131398447:+	0	+
#Deleted in new
chr5	132179233	132179447	ENSG00000224015.1|AC063976.1|lncRNA|chr5:132179233:132179447:-	0	-
#Deleted in new
chr5	132180961	132181128	ENSG00000224015.1|AC063976.1|lncRNA|chr5:132180961:132181128:-	0	-
#Deleted in new
chr5	132184875	132185087	ENSG00000237714.1|P4HA2-AS1|lncRNA|chr5:132184875:132185087:+	0	+
#Deleted in new
chr5	132187294	132187373	ENSG00000237714.1|P4HA2-AS1|lncRNA|chr5:132187294:132187373:+	0	+
#Partially deleted in new
chr5	132277208	132277488	ENSG00000072682.18|P4HA2|pc|chr5:132277208:132277488:-	0	-
#Deleted in new
chr5	132277341	132277488	ENSG00000072682.18|P4HA2|pc|chr5:132277341:132277488:-	0	-
#Deleted in new
chr5	132277341	132277600	ENSG00000072682.18|P4HA2|pc|chr5:132277341:132277600:-	0	-
#Deleted in new
chr5	132277706	132277855	ENSG00000072682.18|P4HA2|pc|chr5:132277706:132277855:-	0	-
#Deleted in new
chr5	132277706	132277922	ENSG00000072682.18|P4HA2|pc|chr5:132277706:132277922:-	0	-
#Deleted in new
chr5	132280781	132280954	ENSG00000072682.18|P4HA2|pc|chr5:132280781:132280954:-	0	-
#Deleted in new
chr5	132332188	132332310	ENSG00000233006.6|MIR3936HG|lncRNA|chr5:132332188:132332310:-	0	-
#Deleted in new
chr5	132349432	132349957	ENSG00000233006.6|MIR3936HG|lncRNA|chr5:132349432:132349957:-	0	-
#Deleted in new
chr5	132349814	132349957	ENSG00000233006.6|MIR3936HG|lncRNA|chr5:132349814:132349957:-	0	-
#Deleted in new
chr5	132352488	132352550	ENSG00000233006.6|MIR3936HG|lncRNA|chr5:132352488:132352550:-	0	-
#Deleted in new
chr5	132352488	132352631	ENSG00000233006.6|MIR3936HG|lncRNA|chr5:132352488:132352631:-	0	-
#Deleted in new
chr5	132360079	132360116	ENSG00000233006.6|MIR3936HG|lncRNA|chr5:132360079:132360116:-	0	-
#Deleted in new
chr5	132360079	132360136	ENSG00000233006.6|MIR3936HG|lncRNA|chr5:132360079:132360136:-	0	-
#Deleted in new
chr5	132364934	132365027	ENSG00000233006.6|MIR3936HG|lncRNA|chr5:132364934:132365027:-	0	-
#Deleted in new
chr5	132366280	132366781	ENSG00000233006.6|MIR3936HG|lncRNA|chr5:132366280:132366781:-	0	-
#Deleted in new
chr5	132366567	132366781	ENSG00000233006.6|MIR3936HG|lncRNA|chr5:132366567:132366781:-	0	-
#Partially deleted in new
chr5	132460561	132460930	ENSG00000197536.11|C5orf56|pc|chr5:132460561:132460930:+	0	+
#Partially deleted in new
chr5	132472602	132473043	ENSG00000234290.2|AC116366.1|lncRNA|chr5:132472602:132473043:-	0	-
#Partially deleted in new
chr5	1324762	1325816	ENSG00000049656.13|CLPTM1L|pc|chr5:1324762:1325816:-	0	-
#Partially deleted in new
chr5	132556018	132556473	ENSG00000113522.13|RAD50|pc|chr5:132556018:132556473:+	0	+
#Partially deleted in new
chr5	132556331	132556473	ENSG00000283782.1|AC116366.3|pc|chr5:132556331:132556473:+	0	+
#Deleted in new
chr5	132592763	132593527	ENSG00000113522.13|RAD50|pc|chr5:132592763:132593527:+	0	+
#Deleted in new
chr5	132600061	132600138	ENSG00000113522.13|RAD50|pc|chr5:132600061:132600138:+	0	+
#Deleted in new
chr5	1326014	1326255	ENSG00000049656.13|CLPTM1L|pc|chr5:1326014:1326255:-	0	-
#Partially deleted in new
chr5	132630588	132630891	ENSG00000223442.1|TH2LCRR|lncRNA|chr5:132630588:132630891:-	0	-
#Partially deleted in new
chr5	132642177	132646079	ENSG00000283782.1|AC116366.3|pc|chr5:132642177:132646079:+	0	+
#Partially deleted in new
chr5	132642177	132646344	ENSG00000113522.13|RAD50|pc|chr5:132642177:132646344:+	0	+
#Deleted in new
chr5	132655718	132655892	ENSG00000223442.1|TH2LCRR|lncRNA|chr5:132655718:132655892:-	0	-
#Deleted in new
chr5	132656050	132656154	ENSG00000223442.1|TH2LCRR|lncRNA|chr5:132656050:132656154:-	0	-
#Deleted in new
chr5	132677780	132677881	ENSG00000113520.10|IL4|pc|chr5:132677780:132677881:+	0	+
#Deleted in new
chr5	132689581	132689834	ENSG00000230612.3|AC004039.1|lncRNA|chr5:132689581:132689834:+	0	+
#Deleted in new
chr5	132689723	132689834	ENSG00000230612.3|AC004039.1|lncRNA|chr5:132689723:132689834:+	0	+
#Partially deleted in new
chr5	132692450	132692634	ENSG00000230612.3|AC004039.1|lncRNA|chr5:132692450:132692634:+	0	+
#Partially deleted in new
chr5	132697518	132697956	ENSG00000230612.3|AC004039.1|lncRNA|chr5:132697518:132697956:+	0	+
#Deleted in new
chr5	132721354	132721583	ENSG00000230612.3|AC004039.1|lncRNA|chr5:132721354:132721583:+	0	+
#Deleted in new
chr5	132723060	132723725	ENSG00000230612.3|AC004039.1|lncRNA|chr5:132723060:132723725:+	0	+
#Deleted in new
chr5	132747444	132747924	ENSG00000205089.7|CCNI2|pc|chr5:132747444:132747924:+	0	+
#Deleted in new
chr5	132749347	132749422	ENSG00000205089.7|CCNI2|pc|chr5:132749347:132749422:+	0	+
#Deleted in new
chr5	132749369	132749422	ENSG00000205089.7|CCNI2|pc|chr5:132749369:132749422:+	0	+
#Deleted in new
chr5	132827460	132827607	ENSG00000164403.14|SHROOM1|pc|chr5:132827460:132827607:-	0	-
#Deleted in new
chr5	132866187	132866330	ENSG00000164404.8|GDF9|pc|chr5:132866187:132866330:-	0	-
#Partially deleted in new
chr5	132903860	132904180	ENSG00000072364.12|AFF4|pc|chr5:132903860:132904180:-	0	-
#Deleted in new
chr5	133011338	133011455	ENSG00000155329.11|ZCCHC10|pc|chr5:133011338:133011455:-	0	-
#Deleted in new
chr5	133019037	133019203	ENSG00000155329.11|ZCCHC10|pc|chr5:133019037:133019203:-	0	-
#Deleted in new
chr5	133022840	133022906	ENSG00000155329.11|ZCCHC10|pc|chr5:133022840:133022906:-	0	-
#Deleted in new
chr5	133076042	133076180	ENSG00000170606.14|HSPA4|pc|chr5:133076042:133076180:+	0	+
#Deleted in new
chr5	133207835	133207928	ENSG00000248245.1|AC010307.2|lncRNA|chr5:133207835:133207928:+	0	+
#Deleted in new
chr5	133208264	133208342	ENSG00000248245.1|AC010307.2|lncRNA|chr5:133208264:133208342:+	0	+
#Deleted in new
chr5	133209791	133209895	ENSG00000053108.16|FSTL4|pc|chr5:133209791:133209895:-	0	-
#Partially deleted in new
chr5	1332114	1332338	ENSG00000049656.13|CLPTM1L|pc|chr5:1332114:1332338:-	0	-
#Deleted in new
chr5	133266584	133266618	ENSG00000250244.5|AC010307.4|lncRNA|chr5:133266584:133266618:+	0	+
#Deleted in new
chr5	133334010	133334058	ENSG00000053108.16|FSTL4|pc|chr5:133334010:133334058:-	0	-
#Deleted in new
chr5	133388472	133388549	ENSG00000250409.1|AC010608.1|lncRNA|chr5:133388472:133388549:+	0	+
#Partially deleted in new
chr5	133574828	133575298	ENSG00000279197.1|AC010608.2|lncRNA|chr5:133574828:133575298:-	0	-
#Partially deleted in new
chr5	133583264	133583641	ENSG00000053108.16|FSTL4|pc|chr5:133583264:133583641:-	0	-
#Deleted in new
chr5	133917054	133917269	ENSG00000249073.1|WSPAR|lncRNA|chr5:133917054:133917269:+	0	+
#Deleted in new
chr5	133988787	133989243	ENSG00000213585.10|VDAC1|pc|chr5:133988787:133989243:-	0	-
#Partially deleted in new
chr5	134148934	134157768	ENSG00000113558.18|SKP1|pc|chr5:134148934:134157768:-	0	-
#Deleted in new
chr5	134151655	134151865	ENSG00000081059.19|TCF7|pc|chr5:134151655:134151865:+	0	+
#Deleted in new
chr5	134157940	134157960	ENSG00000113558.18|SKP1|pc|chr5:134157940:134157960:-	0	-
#Partially deleted in new
chr5	134160986	134161897	ENSG00000113558.18|SKP1|pc|chr5:134160986:134161897:-	0	-
#Deleted in new
chr5	134173700	134173766	ENSG00000113558.18|SKP1|pc|chr5:134173700:134173766:-	0	-
#Deleted in new
chr5	134203524	134203564	ENSG00000113575.9|PPP2CA|pc|chr5:134203524:134203564:-	0	-
#Deleted in new
chr5	134286349	134286559	ENSG00000006837.11|CDKL3|pc|chr5:134286349:134286559:-	0	-
#Deleted in new
chr5	134286437	134286559	ENSG00000006837.11|CDKL3|pc|chr5:134286437:134286559:-	0	-
#Deleted in new
chr5	134319030	134319163	ENSG00000006837.11|CDKL3|pc|chr5:134319030:134319163:-	0	-
#Deleted in new
chr5	134385602	134385636	ENSG00000119048.7|UBE2B|pc|chr5:134385602:134385636:+	0	+
#Deleted in new
chr5	134388976	134389052	ENSG00000119048.7|UBE2B|pc|chr5:134388976:134389052:+	0	+
#Deleted in new
chr5	134399494	134399765	ENSG00000248559.1|AC109454.2|lncRNA|chr5:134399494:134399765:+	0	+
#Duplicated in new
chr5	134401672	134401921	ENSG00000248559.1|AC109454.2|lncRNA|chr5:134401672:134401921:+	0	+
#Deleted in new
chr5	134429050	134429627	ENSG00000250564.1|AC109454.3|lncRNA|chr5:134429050:134429627:-	0	-
#Deleted in new
chr5	134429884	134429951	ENSG00000250564.1|AC109454.3|lncRNA|chr5:134429884:134429951:-	0	-
#Deleted in new
chr5	134460590	134460615	ENSG00000250564.1|AC109454.3|lncRNA|chr5:134460590:134460615:-	0	-
#Deleted in new
chr5	134522612	134523096	ENSG00000280420.1|AC005355.2|lncRNA|chr5:134522612:134523096:-	0	-
#Partially deleted in new
chr5	134544435	134544538	ENSG00000043143.20|JADE2|pc|chr5:134544435:134544538:+	0	+
#Partially deleted in new
chr5	134612690	134614903	ENSG00000152700.13|SAR1B|pc|chr5:134612690:134614903:-	0	-
#Deleted in new
chr5	134613009	134613086	ENSG00000152700.13|SAR1B|pc|chr5:134613009:134613086:-	0	-
#Deleted in new
chr5	134613013	134613137	ENSG00000152700.13|SAR1B|pc|chr5:134613013:134613137:-	0	-
#Deleted in new
chr5	134613075	134613110	ENSG00000152700.13|SAR1B|pc|chr5:134613075:134613110:-	0	-
#Deleted in new
chr5	134618191	134618313	ENSG00000152700.13|SAR1B|pc|chr5:134618191:134618313:-	0	-
#Partially deleted in new
chr5	134631601	134632195	ENSG00000152700.13|SAR1B|pc|chr5:134631601:134632195:-	0	-
#Deleted in new
chr5	134632076	134632195	ENSG00000152700.13|SAR1B|pc|chr5:134632076:134632195:-	0	-
#Deleted in new
chr5	134632076	134632199	ENSG00000152700.13|SAR1B|pc|chr5:134632076:134632199:-	0	-
#Partially deleted in new
chr5	134825812	134827020	ENSG00000145833.15|DDX46|pc|chr5:134825812:134827020:+	0	+
#Deleted in new
chr5	134833580	134833623	ENSG00000145833.15|DDX46|pc|chr5:134833580:134833623:+	0	+
#Deleted in new
chr5	134845679	134845737	ENSG00000181904.8|C5orf24|pc|chr5:134845679:134845737:+	0	+
#Deleted in new
chr5	134875341	134875395	ENSG00000113621.14|TXNDC15|pc|chr5:134875341:134875395:+	0	+
#Partially deleted in new
chr5	134892177	134893655	ENSG00000113621.14|TXNDC15|pc|chr5:134892177:134893655:+	0	+
#Partially deleted in new
chr5	134899488	134901511	ENSG00000113621.14|TXNDC15|pc|chr5:134899488:134901511:+	0	+
#Partially deleted in new
chr5	134899488	134901525	ENSG00000113621.14|TXNDC15|pc|chr5:134899488:134901525:+	0	+
#Deleted in new
chr5	134899936	134900154	ENSG00000113621.14|TXNDC15|pc|chr5:134899936:134900154:+	0	+
#Deleted in new
chr5	134901065	134901511	ENSG00000113621.14|TXNDC15|pc|chr5:134901065:134901511:+	0	+
#Partially deleted in new
chr5	134964469	134969660	ENSG00000132570.14|PCBD2|pc|chr5:134964469:134969660:+	0	+
#Deleted in new
chr5	134975137	134975324	ENSG00000132570.14|PCBD2|pc|chr5:134975137:134975324:+	0	+
#Deleted in new
chr5	135074416	135074528	ENSG00000224186.8|C5orf66|lncRNA|chr5:135074416:135074528:+	0	+
#Partially deleted in new
chr5	135075299	135075388	ENSG00000224186.8|C5orf66|lncRNA|chr5:135075299:135075388:+	0	+
#Deleted in new
chr5	135120525	135120571	ENSG00000248753.1|AC008406.2|lncRNA|chr5:135120525:135120571:+	0	+
#Deleted in new
chr5	135147082	135147200	ENSG00000224186.8|C5orf66|lncRNA|chr5:135147082:135147200:+	0	+
#Deleted in new
chr5	135296494	135296589	ENSG00000224186.8|C5orf66|lncRNA|chr5:135296494:135296589:+	0	+
#Deleted in new
chr5	135337930	135338013	ENSG00000224186.8|C5orf66|lncRNA|chr5:135337930:135338013:+	0	+
#Deleted in new
chr5	135337934	135337973	ENSG00000224186.8|C5orf66|lncRNA|chr5:135337934:135337973:+	0	+
#Deleted in new
chr5	135337938	135338013	ENSG00000224186.8|C5orf66|lncRNA|chr5:135337938:135338013:+	0	+
#Partially deleted in new
chr5	135343154	135344685	ENSG00000224186.8|C5orf66|lncRNA|chr5:135343154:135344685:+	0	+
#Partially deleted in new
chr5	135343259	135345987	ENSG00000113648.16|H2AFY|pc|chr5:135343259:135345987:-	0	-
#Deleted in new
chr5	135458303	135458697	ENSG00000249639.1|AC022092.1|lncRNA|chr5:135458303:135458697:+	0	+
#Deleted in new
chr5	135559576	135559650	ENSG00000250167.1|AC034206.1|lncRNA|chr5:135559576:135559650:+	0	+
#Deleted in new
chr5	135601049	135601203	ENSG00000250167.1|AC034206.1|lncRNA|chr5:135601049:135601203:+	0	+
#Deleted in new
chr5	135634768	135634852	ENSG00000250167.1|AC034206.1|lncRNA|chr5:135634768:135634852:+	0	+
#Deleted in new
chr5	135634768	135634874	ENSG00000250167.1|AC034206.1|lncRNA|chr5:135634768:135634874:+	0	+
#Deleted in new
chr5	135874661	135876380	ENSG00000145832.12|SLC25A48|pc|chr5:135874661:135876380:+	0	+
#Partially deleted in new
chr5	135899951	135900250	ENSG00000254239.1|AC002428.2|lncRNA|chr5:135899951:135900250:+	0	+
#Deleted in new
chr5	135922278	135922434	ENSG00000145826.8|LECT2|pc|chr5:135922278:135922434:-	0	-
#Deleted in new
chr5	136044781	136044870	ENSG00000120708.16|TGFBI|pc|chr5:136044781:136044870:+	0	+
#Partially deleted in new
chr5	136147419	136147906	ENSG00000113658.16|SMAD5|pc|chr5:136147419:136147906:+	0	+
#Deleted in new
chr5	136147831	136147906	ENSG00000113658.16|SMAD5|pc|chr5:136147831:136147906:+	0	+
#Deleted in new
chr5	136152674	136152758	ENSG00000113658.16|SMAD5|pc|chr5:136152674:136152758:+	0	+
#Partially deleted in new
chr5	136222075	136222159	ENSG00000248211.1|TRPC7-AS1|lncRNA|chr5:136222075:136222159:+	0	+
#Deleted in new
chr5	136303756	136303858	ENSG00000250947.1|TRPC7-AS2|lncRNA|chr5:136303756:136303858:+	0	+
#Deleted in new
chr5	1363581	1364691	ENSG00000250584.2|LINC01511|lncRNA|chr5:1363581:1364691:-	0	-
#Deleted in new
chr5	1363625	1364691	ENSG00000250584.2|LINC01511|lncRNA|chr5:1363625:1364691:-	0	-
#Deleted in new
chr5	136376347	136376606	ENSG00000279240.1|AC063980.1|lncRNA|chr5:136376347:136376606:-	0	-
#Deleted in new
chr5	1364113	1364691	ENSG00000250584.2|LINC01511|lncRNA|chr5:1364113:1364691:-	0	-
#Deleted in new
chr5	136466676	136466885	ENSG00000249803.5|AC112178.1|lncRNA|chr5:136466676:136466885:+	0	+
#Deleted in new
chr5	136520174	136520298	ENSG00000249803.5|AC112178.1|lncRNA|chr5:136520174:136520298:+	0	+
#Deleted in new
chr5	136753814	136753972	ENSG00000250284.1|AC109439.2|lncRNA|chr5:136753814:136753972:+	0	+
#Deleted in new
chr5	1368319	1368395	ENSG00000250584.2|LINC01511|lncRNA|chr5:1368319:1368395:-	0	-
#Partially deleted in new
chr5	136988741	136988837	ENSG00000152377.13|SPOCK1|pc|chr5:136988741:136988837:-	0	-
#Deleted in new
chr5	137671766	137671952	ENSG00000146021.14|KLHL3|pc|chr5:137671766:137671952:-	0	-
#Deleted in new
chr5	137672666	137672858	ENSG00000146021.14|KLHL3|pc|chr5:137672666:137672858:-	0	-
#Deleted in new
chr5	137672666	137672927	ENSG00000146021.14|KLHL3|pc|chr5:137672666:137672927:-	0	-
#Deleted in new
chr5	137672753	137672858	ENSG00000146021.14|KLHL3|pc|chr5:137672753:137672858:-	0	-
#Deleted in new
chr5	137673674	137673851	ENSG00000146021.14|KLHL3|pc|chr5:137673674:137673851:-	0	-
#Partially deleted in new
chr5	137673674	137673897	ENSG00000146021.14|KLHL3|pc|chr5:137673674:137673897:-	0	-
#Deleted in new
chr5	137677416	137677469	ENSG00000146021.14|KLHL3|pc|chr5:137677416:137677469:-	0	-
#Deleted in new
chr5	137761545	137761936	ENSG00000270697.1|AC106791.2|lncRNA|chr5:137761545:137761936:+	0	+
#Deleted in new
chr5	137858427	137858481	ENSG00000250159.6|AC106791.1|lncRNA|chr5:137858427:137858481:-	0	-
#Deleted in new
chr5	137859055	137859263	ENSG00000250159.6|AC106791.1|lncRNA|chr5:137859055:137859263:-	0	-
#Partially deleted in new
chr5	137888159	137888288	ENSG00000250159.6|AC106791.1|lncRNA|chr5:137888159:137888288:-	0	-
#Deleted in new
chr5	137889963	137890389	ENSG00000078795.16|PKD2L2|pc|chr5:137889963:137890389:+	0	+
#Deleted in new
chr5	137942383	137942747	ENSG00000078795.16|PKD2L2|pc|chr5:137942383:137942747:+	0	+
#Deleted in new
chr5	1379561	1380067	ENSG00000250584.2|LINC01511|lncRNA|chr5:1379561:1380067:-	0	-
#Deleted in new
chr5	1379664	1380048	ENSG00000250584.2|LINC01511|lncRNA|chr5:1379664:1380048:-	0	-
#Partially deleted in new
chr5	137987460	137987616	ENSG00000031003.10|FAM13B|pc|chr5:137987460:137987616:-	0	-
#Deleted in new
chr5	137988273	137988315	ENSG00000031003.10|FAM13B|pc|chr5:137988273:137988315:-	0	-
#Deleted in new
chr5	138039713	138039979	ENSG00000250260.1|AC113382.2|lncRNA|chr5:138039713:138039979:+	0	+
#Partially deleted in new
chr5	138115171	138115764	ENSG00000112981.4|NME5|pc|chr5:138115171:138115764:-	0	-
#Deleted in new
chr5	138116241	138116381	ENSG00000112981.4|NME5|pc|chr5:138116241:138116381:-	0	-
#Deleted in new
chr5	138127432	138127701	ENSG00000112981.4|NME5|pc|chr5:138127432:138127701:-	0	-
#Deleted in new
chr5	138150744	138151008	ENSG00000112983.17|BRD8|pc|chr5:138150744:138151008:-	0	-
#Deleted in new
chr5	138172719	138172826	ENSG00000112983.17|BRD8|pc|chr5:138172719:138172826:-	0	-
#Deleted in new
chr5	138172719	138172851	ENSG00000112983.17|BRD8|pc|chr5:138172719:138172851:-	0	-
#Partially deleted in new
chr5	138177163	138177667	ENSG00000112983.17|BRD8|pc|chr5:138177163:138177667:-	0	-
#Partially deleted in new
chr5	138205870	138206684	ENSG00000094880.10|CDC23|pc|chr5:138205870:138206684:-	0	-
#Deleted in new
chr5	138291969	138292114	ENSG00000158402.18|CDC25C|pc|chr5:138291969:138292114:-	0	-
#Deleted in new
chr5	138291969	138292116	ENSG00000158402.18|CDC25C|pc|chr5:138291969:138292116:-	0	-
#Deleted in new
chr5	138291984	138292116	ENSG00000158402.18|CDC25C|pc|chr5:138291984:138292116:-	0	-
#Partially deleted in new
chr5	138328483	138328882	ENSG00000158402.18|CDC25C|pc|chr5:138328483:138328882:-	0	-
#Partially deleted in new
chr5	138331934	138331969	ENSG00000120709.10|FAM53C|pc|chr5:138331934:138331969:+	0	+
#Deleted in new
chr5	138336788	138336807	ENSG00000120709.10|FAM53C|pc|chr5:138336788:138336807:+	0	+
#Deleted in new
chr5	138417807	138417987	ENSG00000120733.13|KDM3B|pc|chr5:138417807:138417987:+	0	+
#Duplicated in new
chr5	138426740	138427065	ENSG00000120733.13|KDM3B|pc|chr5:138426740:138427065:+	0	+
#Deleted in new
chr5	138443586	138443858	ENSG00000132563.15|REEP2|pc|chr5:138443586:138443858:+	0	+
#Partially deleted in new
chr5	138560780	138560931	ENSG00000113013.12|HSPA9|pc|chr5:138560780:138560931:-	0	-
#Deleted in new
chr5	13860302	13860515	ENSG00000251423.2|AC016576.1|lncRNA|chr5:13860302:13860515:+	0	+
#Deleted in new
chr5	13860337	13860555	ENSG00000251423.2|AC016576.1|lncRNA|chr5:13860337:13860555:+	0	+
#Deleted in new
chr5	138663836	138663876	ENSG00000044115.20|CTNNA1|pc|chr5:138663836:138663876:+	0	+
#Deleted in new
chr5	138723466	138723625	ENSG00000044115.20|CTNNA1|pc|chr5:138723466:138723625:+	0	+
#Deleted in new
chr5	138744433	138744762	ENSG00000253404.1|AC034243.1|lncRNA|chr5:138744433:138744762:-	0	-
#Deleted in new
chr5	138761940	138762098	ENSG00000044115.20|CTNNA1|pc|chr5:138761940:138762098:+	0	+
#Deleted in new
chr5	138880189	138880288	ENSG00000044115.20|CTNNA1|pc|chr5:138880189:138880288:+	0	+
#Deleted in new
chr5	138880194	138880288	ENSG00000044115.20|CTNNA1|pc|chr5:138880194:138880288:+	0	+
#Deleted in new
chr5	138880213	138880288	ENSG00000044115.20|CTNNA1|pc|chr5:138880213:138880288:+	0	+
#Deleted in new
chr5	138881041	138881106	ENSG00000044115.20|CTNNA1|pc|chr5:138881041:138881106:+	0	+
#Deleted in new
chr5	138881041	138881137	ENSG00000044115.20|CTNNA1|pc|chr5:138881041:138881137:+	0	+
#Deleted in new
chr5	138881041	138881138	ENSG00000044115.20|CTNNA1|pc|chr5:138881041:138881138:+	0	+
#Deleted in new
chr5	138881044	138881137	ENSG00000044115.20|CTNNA1|pc|chr5:138881044:138881137:+	0	+
#Deleted in new
chr5	13896588	13896745	ENSG00000251423.2|AC016576.1|lncRNA|chr5:13896588:13896745:+	0	+
#Deleted in new
chr5	139012646	139012786	ENSG00000249593.6|AC011405.1|lncRNA|chr5:139012646:139012786:+	0	+
#Deleted in new
chr5	139012649	139012736	ENSG00000249593.6|AC011405.1|lncRNA|chr5:139012649:139012736:+	0	+
#Deleted in new
chr5	139012649	139012786	ENSG00000249593.6|AC011405.1|lncRNA|chr5:139012649:139012786:+	0	+
#Partially deleted in new
chr5	139016871	139017229	ENSG00000249593.6|AC011405.1|lncRNA|chr5:139016871:139017229:+	0	+
#Deleted in new
chr5	139032893	139032931	ENSG00000249593.6|AC011405.1|lncRNA|chr5:139032893:139032931:+	0	+
#Deleted in new
chr5	139034396	139034442	ENSG00000249593.6|AC011405.1|lncRNA|chr5:139034396:139034442:+	0	+
#Deleted in new
chr5	139093810	139093881	ENSG00000120725.12|SIL1|pc|chr5:139093810:139093881:-	0	-
#Partially deleted in new
chr5	139279050	139279586	ENSG00000281398.2|SNHG4|lncRNA|chr5:139279050:139279586:+	0	+
#Deleted in new
chr5	139279548	139279839	ENSG00000281398.2|SNHG4|lncRNA|chr5:139279548:139279839:+	0	+
#Deleted in new
chr5	139279934	139280058	ENSG00000280987.4|MATR3|pc|chr5:139279934:139280058:+	0	+
#Deleted in new
chr5	139279934	139280058	ENSG00000281398.2|SNHG4|lncRNA|chr5:139279934:139280058:+	0	+
#Deleted in new
chr5	139279934	139280059	ENSG00000281398.2|SNHG4|lncRNA|chr5:139279934:139280059:+	0	+
#Deleted in new
chr5	139280567	139280685	ENSG00000120725.12|SIL1|pc|chr5:139280567:139280685:-	0	-
#Deleted in new
chr5	139282738	139282989	ENSG00000281398.2|SNHG4|lncRNA|chr5:139282738:139282989:+	0	+
#Deleted in new
chr5	139282738	139283145	ENSG00000281398.2|SNHG4|lncRNA|chr5:139282738:139283145:+	0	+
#Deleted in new
chr5	139282738	139283244	ENSG00000281398.2|SNHG4|lncRNA|chr5:139282738:139283244:+	0	+
#Deleted in new
chr5	139283530	139283601	ENSG00000280987.4|MATR3|pc|chr5:139283530:139283601:+	0	+
#Deleted in new
chr5	139285247	139285310	ENSG00000120725.12|SIL1|pc|chr5:139285247:139285310:-	0	-
#Deleted in new
chr5	139291971	139292074	ENSG00000280987.4|MATR3|pc|chr5:139291971:139292074:+	0	+
#Deleted in new
chr5	139408587	139408862	ENSG00000170464.9|DNAJC18|pc|chr5:139408587:139408862:-	0	-
#Deleted in new
chr5	139440678	139441024	ENSG00000170464.9|DNAJC18|pc|chr5:139440678:139441024:-	0	-
#Partially deleted in new
chr5	139443680	139443767	ENSG00000170464.9|DNAJC18|pc|chr5:139443680:139443767:-	0	-
#Partially deleted in new
chr5	139443684	139443767	ENSG00000170464.9|DNAJC18|pc|chr5:139443684:139443767:-	0	-
#Partially deleted in new
chr5	139443684	139443767	ENSG00000279686.1|AC142391.1|pc|chr5:139443684:139443767:-	0	-
#Deleted in new
chr5	139479103	139479204	ENSG00000184584.12|TMEM173|pc|chr5:139479103:139479204:-	0	-
#Deleted in new
chr5	139479169	139479204	ENSG00000184584.12|TMEM173|pc|chr5:139479169:139479204:-	0	-
#Partially deleted in new
chr5	139482	140716	ENSG00000153404.14|PLEKHG4B|pc|chr5:139482:140716:+	0	+
#Deleted in new
chr5	139526430	139526612	ENSG00000131508.15|UBE2D2|pc|chr5:139526430:139526612:+	0	+
#Deleted in new
chr5	139599561	139599585	ENSG00000131508.15|UBE2D2|pc|chr5:139599561:139599585:+	0	+
#Deleted in new
chr5	139679682	139679940	ENSG00000171604.11|CXXC5|pc|chr5:139679682:139679940:+	0	+
#Deleted in new
chr5	139679846	139679940	ENSG00000171604.11|CXXC5|pc|chr5:139679846:139679940:+	0	+
#Partially deleted in new
chr5	139685327	139685432	ENSG00000249526.1|AC008667.1|lncRNA|chr5:139685327:139685432:+	0	+
#Deleted in new
chr5	139721902	139721967	ENSG00000249526.1|AC008667.1|lncRNA|chr5:139721902:139721967:+	0	+
#Deleted in new
chr5	139772527	139772954	ENSG00000251387.1|AC008667.3|lncRNA|chr5:139772527:139772954:-	0	-
#Deleted in new
chr5	139775280	139775406	ENSG00000251387.1|AC008667.3|lncRNA|chr5:139775280:139775406:-	0	-
#Deleted in new
chr5	139775304	139775472	ENSG00000271792.1|AC008667.4|lncRNA|chr5:139775304:139775472:+	0	+
#Deleted in new
chr5	140072856	140073077	ENSG00000245146.6|LINC01024|lncRNA|chr5:140072856:140073077:-	0	-
#Partially deleted in new
chr5	140102921	140104166	ENSG00000245146.6|LINC01024|lncRNA|chr5:140102921:140104166:-	0	-
#Deleted in new
chr5	1401159	1401307	ENSG00000142319.17|SLC6A3|pc|chr5:1401159:1401307:-	0	-
#Partially deleted in new
chr5	140161952	140167477	ENSG00000254363.6|AC011379.2|lncRNA|chr5:140161952:140167477:+	0	+
#Deleted in new
chr5	140164649	140164812	ENSG00000254363.6|AC011379.2|lncRNA|chr5:140164649:140164812:+	0	+
#Partially deleted in new
chr5	140168636	140168785	ENSG00000254363.6|AC011379.2|lncRNA|chr5:140168636:140168785:+	0	+
#Partially deleted in new
chr5	140244641	140244810	ENSG00000120306.9|CYSTM1|pc|chr5:140244641:140244810:+	0	+
#Deleted in new
chr5	140257	140716	ENSG00000153404.14|PLEKHG4B|pc|chr5:140257:140716:+	0	+
#Deleted in new
chr5	140262528	140262531	ENSG00000113068.9|PFDN1|pc|chr5:140262528:140262531:-	0	-
#Deleted in new
chr5	140265706	140265830	ENSG00000120306.9|CYSTM1|pc|chr5:140265706:140265830:+	0	+
#Duplicated in new
chr5	140485588	140486076	ENSG00000131503.20|ANKHD1|pc|chr5:140485588:140486076:+	0	+
#Deleted in new
chr5	140565	140716	ENSG00000153404.14|PLEKHG4B|pc|chr5:140565:140716:+	0	+
#Deleted in new
chr5	140571927	140571979	ENSG00000283155.1|AC116353.4|lncRNA|chr5:140571927:140571979:-	0	-
#Partially deleted in new
chr5	140638739	140639256	ENSG00000131495.8|NDUFA2|pc|chr5:140638739:140639256:-	0	-
#Deleted in new
chr5	140648882	140648980	ENSG00000113141.17|IK|pc|chr5:140648882:140648980:+	0	+
#Partially deleted in new
chr5	140666574	140668502	ENSG00000120314.18|WDR55|pc|chr5:140666574:140668502:+	0	+
#Partially deleted in new
chr5	140683545	140683667	ENSG00000170445.12|HARS|pc|chr5:140683545:140683667:-	0	-
#Partially deleted in new
chr5	140683545	140685338	ENSG00000170445.12|HARS|pc|chr5:140683545:140685338:-	0	-
#Deleted in new
chr5	140805059	140805621	ENSG00000204969.6|PCDHA2|pc|chr5:140805059:140805621:+	0	+
#Partially deleted in new
chr5	140807036	140817593	ENSG00000204967.10|PCDHA4|pc|chr5:140807036:140817593:+	0	+
#Deleted in new
chr5	140878072	140878099	ENSG00000278901.1|AC005609.1|lncRNA|chr5:140878072:140878099:-	0	-
#Deleted in new
chr5	141046259	141046566	ENSG00000279047.3|AC244517.5|lncRNA|chr5:141046259:141046566:-	0	-
#Deleted in new
chr5	141057749	141057850	ENSG00000279047.3|AC244517.5|lncRNA|chr5:141057749:141057850:-	0	-
#Deleted in new
chr5	141057777	141057850	ENSG00000279047.3|AC244517.5|lncRNA|chr5:141057777:141057850:-	0	-
#Deleted in new
chr5	141062410	141062533	ENSG00000279047.3|AC244517.5|lncRNA|chr5:141062410:141062533:-	0	-
#Partially deleted in new
chr5	141077776	141078024	ENSG00000279047.3|AC244517.5|lncRNA|chr5:141077776:141078024:-	0	-
#Partially deleted in new
chr5	141077776	141078031	ENSG00000279047.3|AC244517.5|lncRNA|chr5:141077776:141078031:-	0	-
#Deleted in new
chr5	141080418	141080515	ENSG00000279558.1|AC244517.9|lncRNA|chr5:141080418:141080515:+	0	+
#Deleted in new
chr5	141084283	141084481	ENSG00000279558.1|AC244517.9|lncRNA|chr5:141084283:141084481:+	0	+
#Deleted in new
chr5	141168230	141168893	ENSG00000280336.1|AC244517.12|lncRNA|chr5:141168230:141168893:+	0	+
#Deleted in new
chr5	141191598	141191951	ENSG00000279375.1|AC244517.7|lncRNA|chr5:141191598:141191951:-	0	-
#Duplicated in new
chr5	141209820	141211537	ENSG00000120328.6|PCDHB12|pc|chr5:141209820:141211537:+	0	+
#Duplicated in new
chr5	141209820	141211559	ENSG00000120328.6|PCDHB12|pc|chr5:141209820:141211559:+	0	+
#Duplicated in new
chr5	141213918	141218979	ENSG00000187372.11|PCDHB13|pc|chr5:141213918:141218979:+	0	+
#Duplicated in new
chr5	141240843	141241043	ENSG00000280029.3|AC244517.11|lncRNA|chr5:141240843:141241043:-	0	-
#Deleted in new
chr5	141263812	141263934	ENSG00000178913.7|TAF7|pc|chr5:141263812:141263934:-	0	-
#Deleted in new
chr5	141468464	141468585	ENSG00000273557.1|AC008781.3|lncRNA|chr5:141468464:141468585:+	0	+
#Deleted in new
chr5	141471314	141471528	ENSG00000273557.1|AC008781.3|lncRNA|chr5:141471314:141471528:+	0	+
#Deleted in new
chr5	141550498	141550507	ENSG00000131504.15|DIAPH1|pc|chr5:141550498:141550507:-	0	-
#Partially deleted in new
chr5	141642396	141642503	ENSG00000197948.10|FCHSD1|pc|chr5:141642396:141642503:-	0	-
#Partially deleted in new
chr5	141642396	141642704	ENSG00000197948.10|FCHSD1|pc|chr5:141642396:141642704:-	0	-
#Deleted in new
chr5	141969607	141969741	ENSG00000113555.5|PCDH12|pc|chr5:141969607:141969741:-	0	-
#Deleted in new
chr5	141981601	141981684	ENSG00000254099.1|AC005740.3|lncRNA|chr5:141981601:141981684:-	0	-
#Deleted in new
chr5	142345415	142345485	ENSG00000231185.6|SPRY4-AS1|lncRNA|chr5:142345415:142345485:+	0	+
#Deleted in new
chr5	142367828	142367886	ENSG00000231185.6|SPRY4-AS1|lncRNA|chr5:142367828:142367886:+	0	+
#Deleted in new
chr5	142404200	142404353	ENSG00000231185.6|SPRY4-AS1|lncRNA|chr5:142404200:142404353:+	0	+
#Deleted in new
chr5	142404217	142404353	ENSG00000231185.6|SPRY4-AS1|lncRNA|chr5:142404217:142404353:+	0	+
#Deleted in new
chr5	142581801	142581914	ENSG00000231185.6|SPRY4-AS1|lncRNA|chr5:142581801:142581914:+	0	+
#Deleted in new
chr5	142581847	142581914	ENSG00000231185.6|SPRY4-AS1|lncRNA|chr5:142581847:142581914:+	0	+
#Deleted in new
chr5	142703781	142705421	ENSG00000261757.1|AC005592.1|lncRNA|chr5:142703781:142705421:+	0	+
#Deleted in new
chr5	142756733	142756830	ENSG00000236714.1|LINC01844|lncRNA|chr5:142756733:142756830:+	0	+
#Deleted in new
chr5	142757826	142757934	ENSG00000236714.1|LINC01844|lncRNA|chr5:142757826:142757934:+	0	+
#Deleted in new
chr5	142915541	142915684	ENSG00000145819.15|ARHGAP26|pc|chr5:142915541:142915684:+	0	+
#Deleted in new
chr5	143046	143256	ENSG00000153404.14|PLEKHG4B|pc|chr5:143046:143256:+	0	+
#Deleted in new
chr5	143166026	143166097	ENSG00000145819.15|ARHGAP26|pc|chr5:143166026:143166097:+	0	+
#Partially deleted in new
chr5	143216186	143216601	ENSG00000145819.15|ARHGAP26|pc|chr5:143216186:143216601:+	0	+
#Partially deleted in new
chr5	143216186	143216770	ENSG00000145819.15|ARHGAP26|pc|chr5:143216186:143216770:+	0	+
#Deleted in new
chr5	143375627	143375883	ENSG00000279679.1|AC091925.2|lncRNA|chr5:143375627:143375883:-	0	-
#Deleted in new
chr5	143379	143503	ENSG00000153404.14|PLEKHG4B|pc|chr5:143379:143503:+	0	+
#Partially deleted in new
chr5	143433718	143433817	ENSG00000113580.14|NR3C1|pc|chr5:143433718:143433817:-	0	-
#Partially deleted in new
chr5	143433718	143433827	ENSG00000113580.14|NR3C1|pc|chr5:143433718:143433827:-	0	-
#Deleted in new
chr5	143530913	143531350	ENSG00000249429.1|AC016598.1|lncRNA|chr5:143530913:143531350:-	0	-
#Deleted in new
chr5	143672578	143672697	ENSG00000249881.1|AC008696.2|lncRNA|chr5:143672578:143672697:+	0	+
#Deleted in new
chr5	143828326	143828772	ENSG00000249881.1|AC008696.2|lncRNA|chr5:143828326:143828772:+	0	+
#Deleted in new
chr5	144174306	144174472	ENSG00000183775.10|KCTD16|pc|chr5:144174306:144174472:+	0	+
#Partially deleted in new
chr5	14420457	14420800	ENSG00000038382.18|TRIO|pc|chr5:14420457:14420800:+	0	+
#Deleted in new
chr5	144826	144920	ENSG00000153404.14|PLEKHG4B|pc|chr5:144826:144920:+	0	+
#Partially deleted in new
chr5	14498518	14499181	ENSG00000038382.18|TRIO|pc|chr5:14498518:14499181:+	0	+
#Deleted in new
chr5	145381586	145381670	ENSG00000250842.1|AC137770.1|lncRNA|chr5:145381586:145381670:-	0	-
#Deleted in new
chr5	145429867	145429925	ENSG00000248125.1|AC008700.1|lncRNA|chr5:145429867:145429925:+	0	+
#Deleted in new
chr5	145429902	145429925	ENSG00000248125.1|AC008700.1|lncRNA|chr5:145429902:145429925:+	0	+
#Partially deleted in new
chr5	145473199	145473315	ENSG00000186314.11|PRELID2|pc|chr5:145473199:145473315:-	0	-
#Deleted in new
chr5	1456479	1458091	ENSG00000153395.9|LPCAT1|pc|chr5:1456479:1458091:-	0	-
#Deleted in new
chr5	145754164	145754379	ENSG00000186314.11|PRELID2|pc|chr5:145754164:145754379:-	0	-
#Deleted in new
chr5	1460122	1460378	ENSG00000153395.9|LPCAT1|pc|chr5:1460122:1460378:-	0	-
#Deleted in new
chr5	146043029	146043126	ENSG00000156463.17|SH3RF2|pc|chr5:146043029:146043126:+	0	+
#Deleted in new
chr5	146043765	146043854	ENSG00000156463.17|SH3RF2|pc|chr5:146043765:146043854:+	0	+
#Deleted in new
chr5	146099405	146099430	ENSG00000251556.1|AC091887.1|lncRNA|chr5:146099405:146099430:+	0	+
#Deleted in new
chr5	1461189	1461397	ENSG00000153395.9|LPCAT1|pc|chr5:1461189:1461397:-	0	-
#Deleted in new
chr5	146139615	146139703	ENSG00000133706.17|LARS|pc|chr5:146139615:146139703:-	0	-
#Deleted in new
chr5	14614530	14615007	ENSG00000145569.5|FAM105A|pc|chr5:14614530:14615007:+	0	+
#Deleted in new
chr5	146181011	146181187	ENSG00000133706.17|LARS|pc|chr5:146181011:146181187:-	0	-
#Deleted in new
chr5	146314895	146315018	ENSG00000275740.1|AC091959.3|pc|chr5:146314895:146315018:+	0	+
#Deleted in new
chr5	146376104	146376219	ENSG00000271724.1|AC011396.3|lncRNA|chr5:146376104:146376219:-	0	-
#Deleted in new
chr5	146504363	146504494	ENSG00000113649.11|TCERG1|pc|chr5:146504363:146504494:+	0	+
#Deleted in new
chr5	146505504	146505621	ENSG00000113649.11|TCERG1|pc|chr5:146505504:146505621:+	0	+
#Deleted in new
chr5	146607693	146607817	ENSG00000250407.1|AC008728.1|lncRNA|chr5:146607693:146607817:+	0	+
#Deleted in new
chr5	146616935	146617004	ENSG00000250407.1|AC008728.1|lncRNA|chr5:146616935:146617004:+	0	+
#Partially deleted in new
chr5	14661807	14664604	ENSG00000261360.1|AC010491.1|lncRNA|chr5:14661807:14664604:-	0	-
#Deleted in new
chr5	14663100	14663315	ENSG00000261360.1|AC010491.1|lncRNA|chr5:14663100:14663315:-	0	-
#Deleted in new
chr5	14663102	14663343	ENSG00000261360.1|AC010491.1|lncRNA|chr5:14663102:14663343:-	0	-
#Partially deleted in new
chr5	146751221	146751570	ENSG00000156475.18|PPP2R2B|pc|chr5:146751221:146751570:-	0	-
#Deleted in new
chr5	147035168	147035240	ENSG00000156475.18|PPP2R2B|pc|chr5:147035168:147035240:-	0	-
#Deleted in new
chr5	147201976	147202151	ENSG00000250343.1|STK32A-AS1|lncRNA|chr5:147201976:147202151:-	0	-
#Partially deleted in new
chr5	147375089	147375916	ENSG00000169302.14|STK32A|pc|chr5:147375089:147375916:+	0	+
#Deleted in new
chr5	147594359	147594477	ENSG00000280780.2|JAKMIP2-AS1|lncRNA|chr5:147594359:147594477:+	0	+
#Deleted in new
chr5	147595424	147595540	ENSG00000280780.2|JAKMIP2-AS1|lncRNA|chr5:147595424:147595540:+	0	+
#Deleted in new
chr5	147595439	147595540	ENSG00000280780.2|JAKMIP2-AS1|lncRNA|chr5:147595439:147595540:+	0	+
#Deleted in new
chr5	147870681	147870754	ENSG00000164265.8|SCGB3A2|pc|chr5:147870681:147870754:+	0	+
#Deleted in new
chr5	147871497	147871679	ENSG00000164265.8|SCGB3A2|pc|chr5:147871497:147871679:+	0	+
#Deleted in new
chr5	147872017	147872321	ENSG00000164265.8|SCGB3A2|pc|chr5:147872017:147872321:+	0	+
#Deleted in new
chr5	147886085	147886878	ENSG00000248362.1|AC011352.1|lncRNA|chr5:147886085:147886878:-	0	-
#Deleted in new
chr5	148101354	148101428	ENSG00000133710.15|SPINK5|pc|chr5:148101354:148101428:+	0	+
#Deleted in new
chr5	148101354	148101436	ENSG00000133710.15|SPINK5|pc|chr5:148101354:148101436:+	0	+
#Deleted in new
chr5	148108752	148108837	ENSG00000133710.15|SPINK5|pc|chr5:148108752:148108837:+	0	+
#Partially deleted in new
chr5	148237688	148237932	ENSG00000248109.2|AC011346.1|pc|chr5:148237688:148237932:+	0	+
#Deleted in new
chr5	148290251	148290995	ENSG00000247199.3|AC091948.1|lncRNA|chr5:148290251:148290995:-	0	-
#Deleted in new
chr5	148308003	148308165	ENSG00000247199.3|AC091948.1|lncRNA|chr5:148308003:148308165:-	0	-
#Deleted in new
chr5	148321202	148321400	ENSG00000204909.7|SPINK9|pc|chr5:148321202:148321400:+	0	+
#Deleted in new
chr5	148323678	148323868	ENSG00000204909.7|SPINK9|pc|chr5:148323678:148323868:+	0	+
#Deleted in new
chr5	148336421	148336453	ENSG00000204909.7|SPINK9|pc|chr5:148336421:148336453:+	0	+
#Deleted in new
chr5	148338477	148338605	ENSG00000204909.7|SPINK9|pc|chr5:148338477:148338605:+	0	+
#Deleted in new
chr5	148339666	148339722	ENSG00000204909.7|SPINK9|pc|chr5:148339666:148339722:+	0	+
#Deleted in new
chr5	148339666	148339849	ENSG00000204909.7|SPINK9|pc|chr5:148339666:148339849:+	0	+
#Deleted in new
chr5	148378701	148378845	ENSG00000247199.3|AC091948.1|lncRNA|chr5:148378701:148378845:-	0	-
#Deleted in new
chr5	148410237	148410485	ENSG00000145868.16|FBXO38|pc|chr5:148410237:148410485:+	0	+
#Deleted in new
chr5	148430158	148430440	ENSG00000251330.3|AC114939.1|lncRNA|chr5:148430158:148430440:-	0	-
#Deleted in new
chr5	148430575	148430807	ENSG00000251330.3|AC114939.1|lncRNA|chr5:148430575:148430807:-	0	-
#Deleted in new
chr5	148461872	148461943	ENSG00000164270.17|HTR4|pc|chr5:148461872:148461943:-	0	-
#Deleted in new
chr5	148674673	148674717	ENSG00000164270.17|HTR4|pc|chr5:148674673:148674717:-	0	-
#Deleted in new
chr5	14868708	14869030	ENSG00000154122.12|ANKH|pc|chr5:14868708:14869030:-	0	-
#Deleted in new
chr5	148923638	148923708	ENSG00000169247.11|SH3TC2|pc|chr5:148923638:148923708:-	0	-
#Partially deleted in new
chr5	149003725	149003842	ENSG00000169247.11|SH3TC2|pc|chr5:149003725:149003842:-	0	-
#Deleted in new
chr5	149034390	149034520	ENSG00000169247.11|SH3TC2|pc|chr5:149034390:149034520:-	0	-
#Deleted in new
chr5	149045893	149045961	ENSG00000169247.11|SH3TC2|pc|chr5:149045893:149045961:-	0	-
#Deleted in new
chr5	149071346	149071527	ENSG00000250072.5|AC091940.1|lncRNA|chr5:149071346:149071527:+	0	+
#Deleted in new
chr5	149089293	149089452	ENSG00000250072.5|AC091940.1|lncRNA|chr5:149089293:149089452:+	0	+
#Partially deleted in new
chr5	149109462	149109787	ENSG00000250072.5|AC091940.1|lncRNA|chr5:149109462:149109787:+	0	+
#Deleted in new
chr5	149276689	149276762	ENSG00000248647.2|AC012613.1|lncRNA|chr5:149276689:149276762:-	0	-
#Deleted in new
chr5	149276689	149276776	ENSG00000248647.2|AC012613.1|lncRNA|chr5:149276689:149276776:-	0	-
#Deleted in new
chr5	149276689	149276805	ENSG00000253406.1|AC012613.2|lncRNA|chr5:149276689:149276805:-	0	-
#Partially deleted in new
chr5	149371323	149371613	ENSG00000127743.5|IL17B|pc|chr5:149371323:149371613:-	0	-
#Deleted in new
chr5	149404107	149404202	ENSG00000127743.5|IL17B|pc|chr5:149404107:149404202:-	0	-
#Partially deleted in new
chr5	149425770	149425886	ENSG00000275871.1|AC131025.2|lncRNA|chr5:149425770:149425886:-	0	-
#Deleted in new
chr5	149427872	149428674	ENSG00000249669.9|CARMN|lncRNA|chr5:149427872:149428674:+	0	+
#Deleted in new
chr5	149427983	149428289	ENSG00000275871.1|AC131025.2|lncRNA|chr5:149427983:149428289:-	0	-
#Deleted in new
chr5	149529603	149529719	ENSG00000113712.17|CSNK1A1|pc|chr5:149529603:149529719:-	0	-
#Deleted in new
chr5	149761431	149761612	ENSG00000155846.16|PPARGC1B|pc|chr5:149761431:149761612:+	0	+
#Partially deleted in new
chr5	149771939	149772139	ENSG00000155846.16|PPARGC1B|pc|chr5:149771939:149772139:+	0	+
#Deleted in new
chr5	149817612	149817746	ENSG00000155846.16|PPARGC1B|pc|chr5:149817612:149817746:+	0	+
#Deleted in new
chr5	150058154	150058271	ENSG00000182578.13|CSF1R|pc|chr5:150058154:150058271:-	0	-
#Deleted in new
chr5	150067025	150067181	ENSG00000182578.13|CSF1R|pc|chr5:150067025:150067181:-	0	-
#Partially deleted in new
chr5	150238288	150238748	ENSG00000070808.15|CAMK2A|pc|chr5:150238288:150238748:-	0	-
#Deleted in new
chr5	150475530	150475759	ENSG00000254333.1|NDST1-AS1|lncRNA|chr5:150475530:150475759:-	0	-
#Deleted in new
chr5	150518797	150518919	ENSG00000070614.14|NDST1|pc|chr5:150518797:150518919:+	0	+
#Deleted in new
chr5	150550413	150550899	ENSG00000070614.14|NDST1|pc|chr5:150550413:150550899:+	0	+
#Deleted in new
chr5	150552560	150552630	ENSG00000070614.14|NDST1|pc|chr5:150552560:150552630:+	0	+
#Deleted in new
chr5	150669092	150669164	ENSG00000164591.13|MYOZ3|pc|chr5:150669092:150669164:+	0	+
#Partially deleted in new
chr5	150672651	150673284	ENSG00000164591.13|MYOZ3|pc|chr5:150672651:150673284:+	0	+
#Deleted in new
chr5	150734179	150734475	ENSG00000132912.12|DCTN4|pc|chr5:150734179:150734475:-	0	-
#Deleted in new
chr5	150736308	150736316	ENSG00000132912.12|DCTN4|pc|chr5:150736308:150736316:-	0	-
#Deleted in new
chr5	150742817	150743159	ENSG00000132912.12|DCTN4|pc|chr5:150742817:150743159:-	0	-
#Deleted in new
chr5	150755530	150755567	ENSG00000132912.12|DCTN4|pc|chr5:150755530:150755567:-	0	-
#Deleted in new
chr5	150846522	150847220	ENSG00000237693.4|IRGM|pc|chr5:150846522:150847220:+	0	+
#Partially deleted in new
chr5	150846802	150847487	ENSG00000237693.4|IRGM|pc|chr5:150846802:150847487:+	0	+
#Deleted in new
chr5	150900588	150900736	ENSG00000237693.4|IRGM|pc|chr5:150900588:150900736:+	0	+
#Deleted in new
chr5	150903140	150903182	ENSG00000145908.12|ZNF300|pc|chr5:150903140:150903182:-	0	-
#Deleted in new
chr5	150903328	150903383	ENSG00000145908.12|ZNF300|pc|chr5:150903328:150903383:-	0	-
#Deleted in new
chr5	150903863	150903977	ENSG00000145908.12|ZNF300|pc|chr5:150903863:150903977:-	0	-
#Deleted in new
chr5	150904703	150904789	ENSG00000145908.12|ZNF300|pc|chr5:150904703:150904789:-	0	-
#Deleted in new
chr5	150904703	150904978	ENSG00000145908.12|ZNF300|pc|chr5:150904703:150904978:-	0	-
#Deleted in new
chr5	150904703	150904983	ENSG00000145908.12|ZNF300|pc|chr5:150904703:150904983:-	0	-
#Deleted in new
chr5	151020827	151020854	ENSG00000211445.11|GPX3|pc|chr5:151020827:151020854:+	0	+
#Duplicated in new
chr5	151034495	151035067	ENSG00000145901.14|TNIP1|pc|chr5:151034495:151035067:-	0	-
#Deleted in new
chr5	151078402	151078443	ENSG00000145901.14|TNIP1|pc|chr5:151078402:151078443:-	0	-
#Deleted in new
chr5	15112376	15112968	ENSG00000249332.1|AC016651.1|lncRNA|chr5:15112376:15112968:-	0	-
#Deleted in new
chr5	151158427	151158462	ENSG00000254298.1|AC008641.1|lncRNA|chr5:151158427:151158462:-	0	-
#Partially deleted in new
chr5	151181051	151183614	ENSG00000198624.12|CCDC69|pc|chr5:151181051:151183614:-	0	-
#Partially deleted in new
chr5	151181234	151183614	ENSG00000198624.12|CCDC69|pc|chr5:151181234:151183614:-	0	-
#Partially deleted in new
chr5	151181392	151183614	ENSG00000198624.12|CCDC69|pc|chr5:151181392:151183614:-	0	-
#Deleted in new
chr5	151201581	151201688	ENSG00000198624.12|CCDC69|pc|chr5:151201581:151201688:-	0	-
#Deleted in new
chr5	151205399	151205475	ENSG00000198624.12|CCDC69|pc|chr5:151205399:151205475:-	0	-
#Deleted in new
chr5	151205399	151205477	ENSG00000198624.12|CCDC69|pc|chr5:151205399:151205477:-	0	-
#Deleted in new
chr5	151210655	151211145	ENSG00000198624.12|CCDC69|pc|chr5:151210655:151211145:-	0	-
#Deleted in new
chr5	151212149	151212259	ENSG00000196743.8|GM2A|pc|chr5:151212149:151212259:+	0	+
#Deleted in new
chr5	151212758	151212889	ENSG00000196743.8|GM2A|pc|chr5:151212758:151212889:+	0	+
#Deleted in new
chr5	151215565	151215686	ENSG00000198624.12|CCDC69|pc|chr5:151215565:151215686:-	0	-
#Deleted in new
chr5	151288933	151289056	ENSG00000186334.9|SLC36A3|pc|chr5:151288933:151289056:-	0	-
#Deleted in new
chr5	151332428	151332525	ENSG00000186335.8|SLC36A2|pc|chr5:151332428:151332525:-	0	-
#Deleted in new
chr5	151437045	151437179	ENSG00000123643.12|SLC36A1|pc|chr5:151437045:151437179:+	0	+
#Deleted in new
chr5	151437046	151437179	ENSG00000123643.12|SLC36A1|pc|chr5:151437046:151437179:+	0	+
#Deleted in new
chr5	151437085	151437179	ENSG00000123643.12|SLC36A1|pc|chr5:151437085:151437179:+	0	+
#Deleted in new
chr5	151469245	151469271	ENSG00000123643.12|SLC36A1|pc|chr5:151469245:151469271:+	0	+
#Deleted in new
chr5	151470830	151470959	ENSG00000123643.12|SLC36A1|pc|chr5:151470830:151470959:+	0	+
#Partially deleted in new
chr5	151509452	151512769	ENSG00000271795.1|AC011337.1|lncRNA|chr5:151509452:151512769:+	0	+
#Deleted in new
chr5	151512	151599	ENSG00000153404.14|PLEKHG4B|pc|chr5:151512:151599:+	0	+
#Deleted in new
chr5	151654033	151655449	ENSG00000260581.1|AC011374.1|lncRNA|chr5:151654033:151655449:+	0	+
#Deleted in new
chr5	151753814	151753895	ENSG00000177556.11|ATOX1|pc|chr5:151753814:151753895:-	0	-
#Deleted in new
chr5	151753991	151754122	ENSG00000253921.1|AC091982.2|lncRNA|chr5:151753991:151754122:+	0	+
#Deleted in new
chr5	151761289	151761521	ENSG00000253921.1|AC091982.2|lncRNA|chr5:151761289:151761521:+	0	+
#Deleted in new
chr5	151767040	151767247	ENSG00000253921.1|AC091982.2|lncRNA|chr5:151767040:151767247:+	0	+
#Deleted in new
chr5	151770241	151770772	ENSG00000275765.5|AC091982.4|lncRNA|chr5:151770241:151770772:-	0	-
#Split in new
chr5	151786602	151787386	ENSG00000145907.14|G3BP1|pc|chr5:151786602:151787386:+	0	+
#Deleted in new
chr5	151787764	151787794	ENSG00000145907.14|G3BP1|pc|chr5:151787764:151787794:+	0	+
#Deleted in new
chr5	151792044	151792201	ENSG00000145907.14|G3BP1|pc|chr5:151792044:151792201:+	0	+
#Deleted in new
chr5	15192138	15192449	ENSG00000248486.1|LINC02149|lncRNA|chr5:15192138:15192449:-	0	-
#Deleted in new
chr5	151949570	151949663	ENSG00000254226.5|LINC01933|lncRNA|chr5:151949570:151949663:+	0	+
#Deleted in new
chr5	151958897	151958954	ENSG00000254226.5|LINC01933|lncRNA|chr5:151958897:151958954:+	0	+
#Deleted in new
chr5	152217073	152217170	ENSG00000254226.5|LINC01933|lncRNA|chr5:152217073:152217170:+	0	+
#Deleted in new
chr5	152231262	152231299	ENSG00000254226.5|LINC01933|lncRNA|chr5:152231262:152231299:+	0	+
#Partially deleted in new
chr5	152267264	152270448	ENSG00000254226.5|LINC01933|lncRNA|chr5:152267264:152270448:+	0	+
#Deleted in new
chr5	152270194	152270432	ENSG00000254226.5|LINC01933|lncRNA|chr5:152270194:152270432:+	0	+
#Deleted in new
chr5	152270194	152270445	ENSG00000254226.5|LINC01933|lncRNA|chr5:152270194:152270445:+	0	+
#Deleted in new
chr5	152433177	152433368	ENSG00000132911.4|NMUR2|pc|chr5:152433177:152433368:-	0	-
#Deleted in new
chr5	152618964	152620782	ENSG00000249484.8|LINC01470|lncRNA|chr5:152618964:152620782:-	0	-
#Deleted in new
chr5	152619033	152620782	ENSG00000249484.8|LINC01470|lncRNA|chr5:152619033:152620782:-	0	-
#Deleted in new
chr5	152620504	152620782	ENSG00000249484.8|LINC01470|lncRNA|chr5:152620504:152620782:-	0	-
#Deleted in new
chr5	152623230	152623352	ENSG00000249484.8|LINC01470|lncRNA|chr5:152623230:152623352:-	0	-
#Deleted in new
chr5	15266413	15266541	ENSG00000248486.1|LINC02149|lncRNA|chr5:15266413:15266541:-	0	-
#Deleted in new
chr5	152684660	152684785	ENSG00000249484.8|LINC01470|lncRNA|chr5:152684660:152684785:-	0	-
#Deleted in new
chr5	152820244	152820300	ENSG00000249484.8|LINC01470|lncRNA|chr5:152820244:152820300:-	0	-
#Deleted in new
chr5	152885426	152885628	ENSG00000249484.8|LINC01470|lncRNA|chr5:152885426:152885628:-	0	-
#Deleted in new
chr5	152966240	152966334	ENSG00000249484.8|LINC01470|lncRNA|chr5:152966240:152966334:-	0	-
#Deleted in new
chr5	152967092	152967106	ENSG00000249484.8|LINC01470|lncRNA|chr5:152967092:152967106:-	0	-
#Deleted in new
chr5	152972265	152972349	ENSG00000249484.8|LINC01470|lncRNA|chr5:152972265:152972349:-	0	-
#Deleted in new
chr5	153068711	153068813	ENSG00000249484.8|LINC01470|lncRNA|chr5:153068711:153068813:-	0	-
#Deleted in new
chr5	153557797	153558095	ENSG00000155511.17|GRIA1|pc|chr5:153557797:153558095:+	0	+
#Deleted in new
chr5	153573227	153573272	ENSG00000155511.17|GRIA1|pc|chr5:153573227:153573272:+	0	+
#Deleted in new
chr5	153895540	153895785	ENSG00000251183.1|LINC01861|lncRNA|chr5:153895540:153895785:-	0	-
#Deleted in new
chr5	153898186	153898360	ENSG00000251183.1|LINC01861|lncRNA|chr5:153898186:153898360:-	0	-
#Deleted in new
chr5	154051736	154051943	ENSG00000037749.11|MFAP3|pc|chr5:154051736:154051943:+	0	+
#Deleted in new
chr5	154121717	154121897	ENSG00000037749.11|MFAP3|pc|chr5:154121717:154121897:+	0	+
#Deleted in new
chr5	154121717	154122021	ENSG00000037749.11|MFAP3|pc|chr5:154121717:154122021:+	0	+
#Deleted in new
chr5	154134844	154134916	ENSG00000037749.11|MFAP3|pc|chr5:154134844:154134916:+	0	+
#Deleted in new
chr5	154135123	154135481	ENSG00000037749.11|MFAP3|pc|chr5:154135123:154135481:+	0	+
#Deleted in new
chr5	154149865	154149940	ENSG00000037749.11|MFAP3|pc|chr5:154149865:154149940:+	0	+
#Deleted in new
chr5	154149865	154149946	ENSG00000037749.11|MFAP3|pc|chr5:154149865:154149946:+	0	+
#Deleted in new
chr5	154149865	154149947	ENSG00000037749.11|MFAP3|pc|chr5:154149865:154149947:+	0	+
#Deleted in new
chr5	154356152	154356283	ENSG00000164574.15|GALNT10|pc|chr5:154356152:154356283:+	0	+
#Deleted in new
chr5	154392170	154393014	ENSG00000245275.7|SAP30L-AS1|lncRNA|chr5:154392170:154393014:-	0	-
#Deleted in new
chr5	154402789	154402911	ENSG00000164574.15|GALNT10|pc|chr5:154402789:154402911:+	0	+
#Deleted in new
chr5	154406068	154406256	ENSG00000164574.15|GALNT10|pc|chr5:154406068:154406256:+	0	+
#Deleted in new
chr5	154436000	154436336	ENSG00000245275.7|SAP30L-AS1|lncRNA|chr5:154436000:154436336:-	0	-
#Deleted in new
chr5	154442996	154443480	ENSG00000245275.7|SAP30L-AS1|lncRNA|chr5:154442996:154443480:-	0	-
#Deleted in new
chr5	154443361	154443480	ENSG00000245275.7|SAP30L-AS1|lncRNA|chr5:154443361:154443480:-	0	-
#Deleted in new
chr5	1546758	1546965	ENSG00000251532.1|AC091849.2|lncRNA|chr5:1546758:1546965:-	0	-
#Partially deleted in new
chr5	154757173	154757290	ENSG00000155506.16|LARP1|pc|chr5:154757173:154757290:+	0	+
#Deleted in new
chr5	154786476	154786684	ENSG00000155506.16|LARP1|pc|chr5:154786476:154786684:+	0	+
#Deleted in new
chr5	154804773	154805113	ENSG00000155506.16|LARP1|pc|chr5:154804773:154805113:+	0	+
#Deleted in new
chr5	154804860	154805240	ENSG00000155506.16|LARP1|pc|chr5:154804860:154805240:+	0	+
#Partially deleted in new
chr5	154818490	154820472	ENSG00000170271.10|FAXDC2|pc|chr5:154818490:154820472:-	0	-
#Partially deleted in new
chr5	154818493	154821426	ENSG00000170271.10|FAXDC2|pc|chr5:154818493:154821426:-	0	-
#Partially deleted in new
chr5	154823386	154824708	ENSG00000170271.10|FAXDC2|pc|chr5:154823386:154824708:-	0	-
#Deleted in new
chr5	154824460	154824557	ENSG00000170271.10|FAXDC2|pc|chr5:154824460:154824557:-	0	-
#Deleted in new
chr5	154824483	154824557	ENSG00000170271.10|FAXDC2|pc|chr5:154824483:154824557:-	0	-
#Deleted in new
chr5	1548308	1548476	ENSG00000251532.1|AC091849.2|lncRNA|chr5:1548308:1548476:-	0	-
#Deleted in new
chr5	154836142	154836322	ENSG00000170271.10|FAXDC2|pc|chr5:154836142:154836322:-	0	-
#Deleted in new
chr5	154838130	154838178	ENSG00000170271.10|FAXDC2|pc|chr5:154838130:154838178:-	0	-
#Deleted in new
chr5	154838562	154838939	ENSG00000170271.10|FAXDC2|pc|chr5:154838562:154838939:-	0	-
#Partially deleted in new
chr5	154857552	154857893	ENSG00000155508.13|CNOT8|pc|chr5:154857552:154857893:+	0	+
#Partially deleted in new
chr5	154858688	154858816	ENSG00000155508.13|CNOT8|pc|chr5:154858688:154858816:+	0	+
#Deleted in new
chr5	154859175	154859252	ENSG00000170271.10|FAXDC2|pc|chr5:154859175:154859252:-	0	-
#Deleted in new
chr5	154959050	154959175	ENSG00000082515.17|MRPL22|pc|chr5:154959050:154959175:+	0	+
#Deleted in new
chr5	1551503	1551710	ENSG00000251532.1|AC091849.2|lncRNA|chr5:1551503:1551710:-	0	-
#Deleted in new
chr5	155344	155443	ENSG00000153404.14|PLEKHG4B|pc|chr5:155344:155443:+	0	+
#Deleted in new
chr5	15606759	15607031	ENSG00000250250.1|CTD-2350J17.1|lncRNA|chr5:15606759:15607031:-	0	-
#Deleted in new
chr5	156070	156210	ENSG00000153404.14|PLEKHG4B|pc|chr5:156070:156210:+	0	+
#Deleted in new
chr5	15607159	15607249	ENSG00000250250.1|CTD-2350J17.1|lncRNA|chr5:15607159:15607249:-	0	-
#Deleted in new
chr5	15607159	15607348	ENSG00000250250.1|CTD-2350J17.1|lncRNA|chr5:15607159:15607348:-	0	-
#Deleted in new
chr5	156772	156911	ENSG00000153404.14|PLEKHG4B|pc|chr5:156772:156911:+	0	+
#Deleted in new
chr5	156772	157110	ENSG00000153404.14|PLEKHG4B|pc|chr5:156772:157110:+	0	+
#Deleted in new
chr5	156935490	156935676	ENSG00000145850.8|TIMD4|pc|chr5:156935490:156935676:-	0	-
#Deleted in new
chr5	156949650	156949731	ENSG00000145850.8|TIMD4|pc|chr5:156949650:156949731:-	0	-
#Partially deleted in new
chr5	157049037	157049145	ENSG00000113249.12|HAVCR1|pc|chr5:157049037:157049145:-	0	-
#Partially deleted in new
chr5	157049037	157049149	ENSG00000113249.12|HAVCR1|pc|chr5:157049037:157049149:-	0	-
#Partially deleted in new
chr5	157058303	157058396	ENSG00000113249.12|HAVCR1|pc|chr5:157058303:157058396:-	0	-
#Deleted in new
chr5	157114772	157114900	ENSG00000254246.1|AC011377.1|lncRNA|chr5:157114772:157114900:+	0	+
#Deleted in new
chr5	157158883	157159019	ENSG00000155868.7|MED7|pc|chr5:157158883:157159019:-	0	-
#Deleted in new
chr5	157213566	157213697	ENSG00000113263.12|ITK|pc|chr5:157213566:157213697:+	0	+
#Deleted in new
chr5	157224345	157224380	ENSG00000253980.1|AC010609.1|lncRNA|chr5:157224345:157224380:-	0	-
#Deleted in new
chr5	157260121	157260718	ENSG00000253653.1|AC009185.1|lncRNA|chr5:157260121:157260718:-	0	-
#Deleted in new
chr5	157265350	157265423	ENSG00000253653.1|AC009185.1|lncRNA|chr5:157265350:157265423:-	0	-
#Deleted in new
chr5	157277058	157277173	ENSG00000055163.19|CYFIP2|pc|chr5:157277058:157277173:+	0	+
#Partially deleted in new
chr5	157304237	157304782	ENSG00000055163.19|CYFIP2|pc|chr5:157304237:157304782:+	0	+
#Deleted in new
chr5	157324770	157324900	ENSG00000055163.19|CYFIP2|pc|chr5:157324770:157324900:+	0	+
#Deleted in new
chr5	157362614	157363204	ENSG00000251405.2|AC008676.2|lncRNA|chr5:157362614:157363204:-	0	-
#Deleted in new
chr5	157364525	157364605	ENSG00000251405.2|AC008676.2|lncRNA|chr5:157364525:157364605:-	0	-
#Deleted in new
chr5	157375740	157376945	ENSG00000248544.2|AC008676.1|lncRNA|chr5:157375740:157376945:-	0	-
#Deleted in new
chr5	157380013	157380148	ENSG00000248544.2|AC008676.1|lncRNA|chr5:157380013:157380148:-	0	-
#Deleted in new
chr5	157398160	157398214	ENSG00000135074.15|ADAM19|pc|chr5:157398160:157398214:-	0	-
#Deleted in new
chr5	157565963	157566730	ENSG00000253519.1|AC106801.1|lncRNA|chr5:157565963:157566730:+	0	+
#Deleted in new
chr5	157667797	157667852	ENSG00000039600.10|SOX30|pc|chr5:157667797:157667852:-	0	-
#Partially deleted in new
chr5	157794897	157796145	ENSG00000113282.13|CLINT1|pc|chr5:157794897:157796145:-	0	-
#Partially deleted in new
chr5	158199476	158200016	ENSG00000253673.1|AC025437.4|lncRNA|chr5:158199476:158200016:+	0	+
#Deleted in new
chr5	158232138	158232244	ENSG00000253449.1|AC025437.3|lncRNA|chr5:158232138:158232244:-	0	-
#Deleted in new
chr5	158341220	158341424	ENSG00000276778.1|LINC02227|lncRNA|chr5:158341220:158341424:-	0	-
#Partially deleted in new
chr5	158362401	158362541	ENSG00000276778.1|LINC02227|lncRNA|chr5:158362401:158362541:-	0	-
#Deleted in new
chr5	158409645	158409773	ENSG00000276778.1|LINC02227|lncRNA|chr5:158409645:158409773:-	0	-
#Partially deleted in new
chr5	158984707	158984789	ENSG00000253811.1|AC136424.2|lncRNA|chr5:158984707:158984789:+	0	+
#Deleted in new
chr5	159115111	159115323	ENSG00000245812.2|LINC02202|lncRNA|chr5:159115111:159115323:+	0	+
#Deleted in new
chr5	159227714	159227742	ENSG00000253315.1|LINC01932|lncRNA|chr5:159227714:159227742:+	0	+
#Deleted in new
chr5	159229240	159229317	ENSG00000253315.1|LINC01932|lncRNA|chr5:159229240:159229317:+	0	+
#Duplicated in new
chr5	159244659	159245127	ENSG00000253315.1|LINC01932|lncRNA|chr5:159244659:159245127:+	0	+
#Partially deleted in new
chr5	159311207	159312634	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159311207:159312634:+	0	+
#Deleted in new
chr5	159332781	159333003	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159332781:159333003:+	0	+
#Deleted in new
chr5	159332781	159333182	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159332781:159333182:+	0	+
#Deleted in new
chr5	159347515	159347605	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159347515:159347605:+	0	+
#Deleted in new
chr5	159354003	159354121	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159354003:159354121:+	0	+
#Deleted in new
chr5	159392532	159392577	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159392532:159392577:+	0	+
#Deleted in new
chr5	159416523	159416624	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159416523:159416624:+	0	+
#Deleted in new
chr5	159416523	159416641	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159416523:159416641:+	0	+
#Deleted in new
chr5	159424022	159424101	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159424022:159424101:+	0	+
#Deleted in new
chr5	159424022	159424130	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159424022:159424130:+	0	+
#Deleted in new
chr5	159464217	159464337	ENSG00000253298.1|LINC01845|lncRNA|chr5:159464217:159464337:-	0	-
#Deleted in new
chr5	159466126	159466276	ENSG00000253298.1|LINC01845|lncRNA|chr5:159466126:159466276:-	0	-
#Deleted in new
chr5	159614494	159614595	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159614494:159614595:+	0	+
#Partially deleted in new
chr5	159653438	159653569	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159653438:159653569:+	0	+
#Deleted in new
chr5	159708078	159708272	ENSG00000253311.2|LINC01847|lncRNA|chr5:159708078:159708272:-	0	-
#Deleted in new
chr5	159750904	159751129	ENSG00000253311.2|LINC01847|lncRNA|chr5:159750904:159751129:-	0	-
#Deleted in new
chr5	159751740	159751809	ENSG00000253311.2|LINC01847|lncRNA|chr5:159751740:159751809:-	0	-
#Deleted in new
chr5	159786091	159786246	ENSG00000249738.9|AC008691.1|lncRNA|chr5:159786091:159786246:+	0	+
#Deleted in new
chr5	159867857	159867928	ENSG00000253311.2|LINC01847|lncRNA|chr5:159867857:159867928:-	0	-
#Deleted in new
chr5	159867857	159871384	ENSG00000253311.2|LINC01847|lncRNA|chr5:159867857:159871384:-	0	-
#Deleted in new
chr5	159937648	159937766	ENSG00000253311.2|LINC01847|lncRNA|chr5:159937648:159937766:-	0	-
#Deleted in new
chr5	160038914	160039200	ENSG00000113312.10|TTC1|pc|chr5:160038914:160039200:+	0	+
#Deleted in new
chr5	160066547	160066612	ENSG00000170234.12|PWWP2A|pc|chr5:160066547:160066612:-	0	-
#Deleted in new
chr5	160066779	160066871	ENSG00000170234.12|PWWP2A|pc|chr5:160066779:160066871:-	0	-
#Deleted in new
chr5	160187366	160187454	ENSG00000170231.15|FABP6|pc|chr5:160187366:160187454:+	0	+
#Deleted in new
chr5	160195743	160195947	ENSG00000247699.2|AC008609.1|lncRNA|chr5:160195743:160195947:-	0	-
#Deleted in new
chr5	160213726	160213819	ENSG00000170231.15|FABP6|pc|chr5:160213726:160213819:+	0	+
#Deleted in new
chr5	160213735	160213819	ENSG00000170231.15|FABP6|pc|chr5:160213735:160213819:+	0	+
#Deleted in new
chr5	160228472	160228692	ENSG00000170231.15|FABP6|pc|chr5:160228472:160228692:+	0	+
#Deleted in new
chr5	160276268	160276412	ENSG00000135083.14|CCNJL|pc|chr5:160276268:160276412:-	0	-
#Deleted in new
chr5	160281380	160281389	ENSG00000135083.14|CCNJL|pc|chr5:160281380:160281389:-	0	-
#Deleted in new
chr5	160315381	160315505	ENSG00000135083.14|CCNJL|pc|chr5:160315381:160315505:-	0	-
#Deleted in new
chr5	160345319	160345396	ENSG00000135083.14|CCNJL|pc|chr5:160345319:160345396:-	0	-
#Deleted in new
chr5	160397441	160397515	ENSG00000221886.3|ZBED8|pc|chr5:160397441:160397515:-	0	-
#Deleted in new
chr5	160399638	160400036	ENSG00000221886.3|ZBED8|pc|chr5:160399638:160400036:-	0	-
#Deleted in new
chr5	160399638	160400097	ENSG00000221886.3|ZBED8|pc|chr5:160399638:160400097:-	0	-
#Deleted in new
chr5	160417111	160417241	ENSG00000164609.9|SLU7|pc|chr5:160417111:160417241:-	0	-
#Partially deleted in new
chr5	160485298	160487426	ENSG00000253522.5|MIR3142HG|lncRNA|chr5:160485298:160487426:+	0	+
#Deleted in new
chr5	160692630	160692889	ENSG00000254391.1|AC011363.1|lncRNA|chr5:160692630:160692889:+	0	+
#Deleted in new
chr5	160716908	160717034	ENSG00000118322.12|ATP10B|pc|chr5:160716908:160717034:-	0	-
#Partially deleted in new
chr5	160931777	160933807	ENSG00000253417.5|LINC02159|lncRNA|chr5:160931777:160933807:-	0	-
#Partially deleted in new
chr5	160931780	160933633	ENSG00000253417.5|LINC02159|lncRNA|chr5:160931780:160933633:-	0	-
#Deleted in new
chr5	160935989	160936109	ENSG00000253417.5|LINC02159|lncRNA|chr5:160935989:160936109:-	0	-
#Deleted in new
chr5	160938453	160938626	ENSG00000253417.5|LINC02159|lncRNA|chr5:160938453:160938626:-	0	-
#Deleted in new
chr5	1610327	1610417	ENSG00000271119.1|AC026412.3|lncRNA|chr5:1610327:1610417:+	0	+
#Deleted in new
chr5	1610518	1611467	ENSG00000271119.1|AC026412.3|lncRNA|chr5:1610518:1611467:+	0	+
#Deleted in new
chr5	16141011	16141602	ENSG00000250981.1|AC016650.1|lncRNA|chr5:16141011:16141602:+	0	+
#Deleted in new
chr5	161631711	161631833	ENSG00000145863.10|GABRA6|pc|chr5:161631711:161631833:+	0	+
#Deleted in new
chr5	161631729	161631833	ENSG00000145863.10|GABRA6|pc|chr5:161631729:161631833:+	0	+
#Deleted in new
chr5	161640293	161640368	ENSG00000145863.10|GABRA6|pc|chr5:161640293:161640368:+	0	+
#Deleted in new
chr5	161782	161944	ENSG00000153404.14|PLEKHG4B|pc|chr5:161782:161944:+	0	+
#Partially deleted in new
chr5	16180644	16180762	ENSG00000183654.8|MARCH11|pc|chr5:16180644:16180762:-	0	-
#Deleted in new
chr5	162000056	162000228	ENSG00000113327.16|GABRG2|pc|chr5:162000056:162000228:+	0	+
#Deleted in new
chr5	162036770	162036954	ENSG00000113327.16|GABRG2|pc|chr5:162036770:162036954:+	0	+
#Deleted in new
chr5	162061578	162061909	ENSG00000113327.16|GABRG2|pc|chr5:162061578:162061909:+	0	+
#Deleted in new
chr5	162061637	162061909	ENSG00000113327.16|GABRG2|pc|chr5:162061637:162061909:+	0	+
#Deleted in new
chr5	162061658	162061909	ENSG00000113327.16|GABRG2|pc|chr5:162061658:162061909:+	0	+
#Deleted in new
chr5	162102553	162102673	ENSG00000113327.16|GABRG2|pc|chr5:162102553:162102673:+	0	+
#Deleted in new
chr5	162129222	162129261	ENSG00000113327.16|GABRG2|pc|chr5:162129222:162129261:+	0	+
#Deleted in new
chr5	162427305	162427345	ENSG00000254173.1|AC091996.1|lncRNA|chr5:162427305:162427345:-	0	-
#Deleted in new
chr5	162558684	162559057	ENSG00000254186.1|AC091901.1|lncRNA|chr5:162558684:162559057:-	0	-
#Deleted in new
chr5	162591609	162591685	ENSG00000254186.1|AC091901.1|lncRNA|chr5:162591609:162591685:-	0	-
#Deleted in new
chr5	162623334	162623461	ENSG00000254186.1|AC091901.1|lncRNA|chr5:162623334:162623461:-	0	-
#Deleted in new
chr5	162721	163548	ENSG00000153404.14|PLEKHG4B|pc|chr5:162721:163548:+	0	+
#Deleted in new
chr5	163012264	163012288	ENSG00000250061.5|AC091976.1|lncRNA|chr5:163012264:163012288:-	0	-
#Deleted in new
chr5	163038062	163038473	ENSG00000250061.5|AC091976.1|lncRNA|chr5:163038062:163038473:-	0	-
#Deleted in new
chr5	163425802	163425920	ENSG00000250061.5|AC091976.1|lncRNA|chr5:163425802:163425920:-	0	-
#Deleted in new
chr5	163428940	163429033	ENSG00000250061.5|AC091976.1|lncRNA|chr5:163428940:163429033:-	0	-
#Deleted in new
chr5	163445903	163446151	ENSG00000113328.18|CCNG1|pc|chr5:163445903:163446151:+	0	+
#Deleted in new
chr5	163489250	163489383	ENSG00000251018.2|HMMR-AS1|lncRNA|chr5:163489250:163489383:-	0	-
#Deleted in new
chr5	163493442	163493549	ENSG00000251018.2|HMMR-AS1|lncRNA|chr5:163493442:163493549:-	0	-
#Deleted in new
chr5	163493442	163494034	ENSG00000251018.2|HMMR-AS1|lncRNA|chr5:163493442:163494034:-	0	-
#Deleted in new
chr5	163493698	163494058	ENSG00000251018.2|HMMR-AS1|lncRNA|chr5:163493698:163494058:-	0	-
#Deleted in new
chr5	16373360	16373836	ENSG00000248150.1|LINC02150|lncRNA|chr5:16373360:16373836:-	0	-
#Deleted in new
chr5	164119097	164119276	ENSG00000253331.1|AC008662.1|lncRNA|chr5:164119097:164119276:-	0	-
#Deleted in new
chr5	164209630	164209664	ENSG00000253538.1|AC008662.2|lncRNA|chr5:164209630:164209664:+	0	+
#Deleted in new
chr5	164230329	164230448	ENSG00000253331.1|AC008662.1|lncRNA|chr5:164230329:164230448:-	0	-
#Partially deleted in new
chr5	16431047	16431112	ENSG00000248150.1|LINC02150|lncRNA|chr5:16431047:16431112:-	0	-
#Deleted in new
chr5	16437373	16437915	ENSG00000248150.1|LINC02150|lncRNA|chr5:16437373:16437915:-	0	-
#Deleted in new
chr5	16439252	16439475	ENSG00000248150.1|LINC02150|lncRNA|chr5:16439252:16439475:-	0	-
#Deleted in new
chr5	164467289	164467496	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164467289:164467496:+	0	+
#Deleted in new
chr5	164467346	164467402	ENSG00000253236.1|LINC02143|lncRNA|chr5:164467346:164467402:-	0	-
#Deleted in new
chr5	164468564	164468645	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164468564:164468645:+	0	+
#Deleted in new
chr5	164468564	164468653	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164468564:164468653:+	0	+
#Deleted in new
chr5	164468804	164468898	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164468804:164468898:+	0	+
#Deleted in new
chr5	164468865	164468898	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164468865:164468898:+	0	+
#Deleted in new
chr5	164492795	164493112	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164492795:164493112:+	0	+
#Deleted in new
chr5	164523946	164524004	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164523946:164524004:+	0	+
#Deleted in new
chr5	164549418	164549580	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164549418:164549580:+	0	+
#Deleted in new
chr5	164553326	164553400	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164553326:164553400:+	0	+
#Deleted in new
chr5	164554750	164554925	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164554750:164554925:+	0	+
#Deleted in new
chr5	164604817	164604892	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164604817:164604892:+	0	+
#Deleted in new
chr5	164765360	164765405	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164765360:164765405:+	0	+
#Deleted in new
chr5	164920134	164920195	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164920134:164920195:+	0	+
#Deleted in new
chr5	164973487	164973560	ENSG00000241956.9|AC109466.1|lncRNA|chr5:164973487:164973560:+	0	+
#Deleted in new
chr5	165129813	165130233	ENSG00000241956.9|AC109466.1|lncRNA|chr5:165129813:165130233:+	0	+
#Deleted in new
chr5	165220576	165222020	ENSG00000254066.1|LINC01938|lncRNA|chr5:165220576:165222020:-	0	-
#Deleted in new
chr5	165241628	165241752	ENSG00000254066.1|LINC01938|lncRNA|chr5:165241628:165241752:-	0	-
#Deleted in new
chr5	166128497	166128650	ENSG00000254171.1|AC114321.1|lncRNA|chr5:166128497:166128650:+	0	+
#Deleted in new
chr5	166134012	166134110	ENSG00000254171.1|AC114321.1|lncRNA|chr5:166134012:166134110:+	0	+
#Deleted in new
chr5	16621207	16621276	ENSG00000250415.1|AC022113.2|lncRNA|chr5:16621207:16621276:+	0	+
#Partially deleted in new
chr5	16621777	16622032	ENSG00000246214.1|AC022113.1|lncRNA|chr5:16621777:16622032:+	0	+
#Deleted in new
chr5	16625414	16625756	ENSG00000246214.1|AC022113.1|lncRNA|chr5:16625414:16625756:+	0	+
#Deleted in new
chr5	166925962	166926370	ENSG00000254130.1|LINC01947|lncRNA|chr5:166925962:166926370:-	0	-
#Deleted in new
chr5	167116317	167116692	ENSG00000253713.1|AC091819.2|lncRNA|chr5:167116317:167116692:-	0	-
#Deleted in new
chr5	167303122	167303372	ENSG00000254297.1|AC091820.1|lncRNA|chr5:167303122:167303372:-	0	-
#Deleted in new
chr5	167306272	167306611	ENSG00000253527.1|AC008601.1|lncRNA|chr5:167306272:167306611:-	0	-
#Partially deleted in new
chr5	167660057	167660481	ENSG00000254187.1|AC008708.2|lncRNA|chr5:167660057:167660481:-	0	-
#Partially deleted in new
chr5	167721362	167721407	ENSG00000253357.1|AC008708.1|lncRNA|chr5:167721362:167721407:+	0	+
#Deleted in new
chr5	167965186	167965578	ENSG00000253947.1|AC008705.1|lncRNA|chr5:167965186:167965578:-	0	-
#Partially deleted in new
chr5	168087278	168087440	ENSG00000253925.1|AC011369.1|lncRNA|chr5:168087278:168087440:-	0	-
#Deleted in new
chr5	168240909	168241112	ENSG00000145934.16|TENM2|pc|chr5:168240909:168241112:+	0	+
#Partially deleted in new
chr5	168468950	168472303	ENSG00000113645.14|WWC1|pc|chr5:168468950:168472303:+	0	+
#Deleted in new
chr5	168472074	168472303	ENSG00000113645.14|WWC1|pc|chr5:168472074:168472303:+	0	+
#Deleted in new
chr5	168488152	168488270	ENSG00000113643.8|RARS|pc|chr5:168488152:168488270:+	0	+
#Deleted in new
chr5	168497946	168498046	ENSG00000113643.8|RARS|pc|chr5:168497946:168498046:+	0	+
#Deleted in new
chr5	168654512	168654755	ENSG00000254192.1|AC011365.2|lncRNA|chr5:168654512:168654755:+	0	+
#Deleted in new
chr5	168718068	168718185	ENSG00000254042.1|AC011365.1|lncRNA|chr5:168718068:168718185:+	0	+
#Deleted in new
chr5	169023625	169023740	ENSG00000248222.5|AC011389.1|lncRNA|chr5:169023625:169023740:+	0	+
#Deleted in new
chr5	169023683	169023740	ENSG00000248222.5|AC011389.1|lncRNA|chr5:169023683:169023740:+	0	+
#Deleted in new
chr5	169023830	169024088	ENSG00000248222.5|AC011389.1|lncRNA|chr5:169023830:169024088:+	0	+
#Deleted in new
chr5	169585950	169586398	ENSG00000040275.16|SPDL1|pc|chr5:169585950:169586398:+	0	+
#Deleted in new
chr5	169587198	169587372	ENSG00000040275.16|SPDL1|pc|chr5:169587198:169587372:+	0	+
#Deleted in new
chr5	169587258	169587372	ENSG00000040275.16|SPDL1|pc|chr5:169587258:169587372:+	0	+
#Deleted in new
chr5	169587260	169587372	ENSG00000040275.16|SPDL1|pc|chr5:169587260:169587372:+	0	+
#Deleted in new
chr5	169590752	169590829	ENSG00000040275.16|SPDL1|pc|chr5:169590752:169590829:+	0	+
#Deleted in new
chr5	169590755	169590779	ENSG00000040275.16|SPDL1|pc|chr5:169590755:169590779:+	0	+
#Deleted in new
chr5	169590755	169590829	ENSG00000040275.16|SPDL1|pc|chr5:169590755:169590829:+	0	+
#Deleted in new
chr5	169595609	169596080	ENSG00000040275.16|SPDL1|pc|chr5:169595609:169596080:+	0	+
#Partially deleted in new
chr5	169595609	169596178	ENSG00000040275.16|SPDL1|pc|chr5:169595609:169596178:+	0	+
#Deleted in new
chr5	169695178	169695216	ENSG00000134516.15|DOCK2|pc|chr5:169695178:169695216:+	0	+
#Deleted in new
chr5	169695285	169695364	ENSG00000134516.15|DOCK2|pc|chr5:169695285:169695364:+	0	+
#Deleted in new
chr5	169779299	169779365	ENSG00000253269.1|AC008680.1|lncRNA|chr5:169779299:169779365:-	0	-
#Partially deleted in new
chr5	170000030	170000471	ENSG00000134516.15|DOCK2|pc|chr5:170000030:170000471:+	0	+
#Deleted in new
chr5	170237263	170237365	ENSG00000234511.8|C5orf58|pc|chr5:170237263:170237365:+	0	+
#Partially deleted in new
chr5	170312538	170312716	ENSG00000250274.1|AC034199.1|lncRNA|chr5:170312538:170312716:-	0	-
#Deleted in new
chr5	170332847	170332937	ENSG00000235172.7|LINC01366|lncRNA|chr5:170332847:170332937:+	0	+
#Deleted in new
chr5	170420385	170420615	ENSG00000253647.1|CTD-2270F17.1|lncRNA|chr5:170420385:170420615:+	0	+
#Deleted in new
chr5	17065597	17065700	ENSG00000176788.8|BASP1|pc|chr5:17065597:17065700:+	0	+
#Partially deleted in new
chr5	170747046	170747193	ENSG00000253348.1|AC008514.1|lncRNA|chr5:170747046:170747193:-	0	-
#Deleted in new
chr5	170753512	170753648	ENSG00000253348.1|AC008514.1|lncRNA|chr5:170753512:170753648:-	0	-
#Deleted in new
chr5	170757860	170758179	ENSG00000253348.1|AC008514.1|lncRNA|chr5:170757860:170758179:-	0	-
#Deleted in new
chr5	170757884	170757978	ENSG00000253348.1|AC008514.1|lncRNA|chr5:170757884:170757978:-	0	-
#Deleted in new
chr5	170763349	170763514	ENSG00000094755.16|GABRP|pc|chr5:170763349:170763514:+	0	+
#Deleted in new
chr5	170764293	170764430	ENSG00000094755.16|GABRP|pc|chr5:170764293:170764430:+	0	+
#Deleted in new
chr5	170764913	170765382	ENSG00000094755.16|GABRP|pc|chr5:170764913:170765382:+	0	+
#Deleted in new
chr5	170767203	170767543	ENSG00000253348.1|AC008514.1|lncRNA|chr5:170767203:170767543:-	0	-
#Deleted in new
chr5	170767307	170767558	ENSG00000253348.1|AC008514.1|lncRNA|chr5:170767307:170767558:-	0	-
#Deleted in new
chr5	17089072	17089161	ENSG00000176788.8|BASP1|pc|chr5:17089072:17089161:+	0	+
#Deleted in new
chr5	170970491	170970658	ENSG00000204764.13|RANBP17|pc|chr5:170970491:170970658:+	0	+
#Deleted in new
chr5	170983064	170983245	ENSG00000204764.13|RANBP17|pc|chr5:170983064:170983245:+	0	+
#Deleted in new
chr5	17107359	17107789	ENSG00000271892.1|AC026790.2|lncRNA|chr5:17107359:17107789:-	0	-
#Deleted in new
chr5	171143266	171143468	ENSG00000204764.13|RANBP17|pc|chr5:171143266:171143468:+	0	+
#Deleted in new
chr5	171143271	171143468	ENSG00000204764.13|RANBP17|pc|chr5:171143271:171143468:+	0	+
#Deleted in new
chr5	171143311	171143468	ENSG00000204764.13|RANBP17|pc|chr5:171143311:171143468:+	0	+
#Deleted in new
chr5	171143320	171143468	ENSG00000204764.13|RANBP17|pc|chr5:171143320:171143468:+	0	+
#Partially deleted in new
chr5	17130027	17131900	ENSG00000215196.4|AC026790.1|lncRNA|chr5:17130027:17131900:-	0	-
#Deleted in new
chr5	17162468	17162565	ENSG00000215196.4|AC026790.1|lncRNA|chr5:17162468:17162565:-	0	-
#Deleted in new
chr5	171977635	171977756	ENSG00000072803.17|FBXW11|pc|chr5:171977635:171977756:-	0	-
#Deleted in new
chr5	172063462	172063600	ENSG00000072786.12|STK10|pc|chr5:172063462:172063600:-	0	-
#Partially deleted in new
chr5	172114596	172114800	ENSG00000072786.12|STK10|pc|chr5:172114596:172114800:-	0	-
#Deleted in new
chr5	17212119	17212182	ENSG00000176788.8|BASP1|pc|chr5:17212119:17212182:+	0	+
#Partially deleted in new
chr5	1725148	1728172	ENSG00000260066.1|AC112176.1|lncRNA|chr5:1725148:1728172:+	0	+
#Deleted in new
chr5	172558938	172559014	ENSG00000254299.1|LINC01944|lncRNA|chr5:172558938:172559014:-	0	-
#Deleted in new
chr5	172759090	172759153	ENSG00000253295.1|AC022217.2|lncRNA|chr5:172759090:172759153:+	0	+
#Deleted in new
chr5	172906059	172906180	ENSG00000113719.15|ERGIC1|pc|chr5:172906059:172906180:+	0	+
#Partially deleted in new
chr5	172914713	172918335	ENSG00000113719.15|ERGIC1|pc|chr5:172914713:172918335:+	0	+
#Deleted in new
chr5	172915517	172915690	ENSG00000113719.15|ERGIC1|pc|chr5:172915517:172915690:+	0	+
#Deleted in new
chr5	172921526	172921626	ENSG00000113719.15|ERGIC1|pc|chr5:172921526:172921626:+	0	+
#Deleted in new
chr5	172922144	172922468	ENSG00000113719.15|ERGIC1|pc|chr5:172922144:172922468:+	0	+
#Deleted in new
chr5	172954785	172955076	ENSG00000204758.7|AC008429.1|lncRNA|chr5:172954785:172955076:-	0	-
#Deleted in new
chr5	172954906	172955045	ENSG00000254295.1|AC008429.3|lncRNA|chr5:172954906:172955045:+	0	+
#Deleted in new
chr5	172955764	172955791	ENSG00000204758.7|AC008429.1|lncRNA|chr5:172955764:172955791:-	0	-
#Deleted in new
chr5	172957003	172957162	ENSG00000254295.1|AC008429.3|lncRNA|chr5:172957003:172957162:+	0	+
#Deleted in new
chr5	172957153	172957302	ENSG00000204758.7|AC008429.1|lncRNA|chr5:172957153:172957302:-	0	-
#Partially deleted in new
chr5	172957153	172958257	ENSG00000204758.7|AC008429.1|lncRNA|chr5:172957153:172958257:-	0	-
#Deleted in new
chr5	172958138	172958257	ENSG00000204758.7|AC008429.1|lncRNA|chr5:172958138:172958257:-	0	-
#Deleted in new
chr5	172958892	172959007	ENSG00000037241.7|RPL26L1|pc|chr5:172958892:172959007:+	0	+
#Deleted in new
chr5	172959289	172959377	ENSG00000204758.7|AC008429.1|lncRNA|chr5:172959289:172959377:-	0	-
#Deleted in new
chr5	172959289	172959392	ENSG00000204758.7|AC008429.1|lncRNA|chr5:172959289:172959392:-	0	-
#Deleted in new
chr5	172959423	172959468	ENSG00000037241.7|RPL26L1|pc|chr5:172959423:172959468:+	0	+
#Deleted in new
chr5	172959459	172959514	ENSG00000037241.7|RPL26L1|pc|chr5:172959459:172959514:+	0	+
#Deleted in new
chr5	172959519	172959627	ENSG00000037241.7|RPL26L1|pc|chr5:172959519:172959627:+	0	+
#Deleted in new
chr5	173060251	173060455	ENSG00000164463.12|CREBRF|pc|chr5:173060251:173060455:+	0	+
#Partially deleted in new
chr5	173160823	173161877	ENSG00000113734.17|BNIP1|pc|chr5:173160823:173161877:+	0	+
#Deleted in new
chr5	173414034	173414120	ENSG00000253968.1|AC016573.1|lncRNA|chr5:173414034:173414120:+	0	+
#Deleted in new
chr5	173445327	173445428	ENSG00000253968.1|AC016573.1|lncRNA|chr5:173445327:173445428:+	0	+
#Deleted in new
chr5	173463499	173463744	ENSG00000253141.1|AC008632.1|lncRNA|chr5:173463499:173463744:+	0	+
#Deleted in new
chr5	173469468	173469881	ENSG00000253141.1|AC008632.1|lncRNA|chr5:173469468:173469881:+	0	+
#Deleted in new
chr5	173469681	173469717	ENSG00000253141.1|AC008632.1|lncRNA|chr5:173469681:173469717:+	0	+
#Partially deleted in new
chr5	173484247	173484584	ENSG00000253141.1|AC008632.1|lncRNA|chr5:173484247:173484584:+	0	+
#Deleted in new
chr5	173563494	173563544	ENSG00000253768.1|AC008663.1|lncRNA|chr5:173563494:173563544:+	0	+
#Deleted in new
chr5	173574937	173575254	ENSG00000254164.1|AC008663.3|lncRNA|chr5:173574937:173575254:+	0	+
#Deleted in new
chr5	173579642	173579682	ENSG00000253955.1|AC008663.2|lncRNA|chr5:173579642:173579682:+	0	+
#Deleted in new
chr5	173579648	173579682	ENSG00000253955.1|AC008663.2|lncRNA|chr5:173579648:173579682:+	0	+
#Deleted in new
chr5	173580228	173580375	ENSG00000253955.1|AC008663.2|lncRNA|chr5:173580228:173580375:+	0	+
#Deleted in new
chr5	173580228	173581612	ENSG00000253955.1|AC008663.2|lncRNA|chr5:173580228:173581612:+	0	+
#Deleted in new
chr5	173614702	173614852	ENSG00000145919.10|BOD1|pc|chr5:173614702:173614852:-	0	-
#Deleted in new
chr5	173642518	173642657	ENSG00000253959.1|LINC01863|lncRNA|chr5:173642518:173642657:+	0	+
#Deleted in new
chr5	173689458	173689553	ENSG00000253428.1|LINC01942|lncRNA|chr5:173689458:173689553:+	0	+
#Deleted in new
chr5	17369224	17369389	ENSG00000249199.1|AC026785.3|lncRNA|chr5:17369224:17369389:-	0	-
#Deleted in new
chr5	173701528	173701686	ENSG00000253428.1|LINC01942|lncRNA|chr5:173701528:173701686:+	0	+
#Deleted in new
chr5	173707613	173707875	ENSG00000253686.1|LINC01484|lncRNA|chr5:173707613:173707875:-	0	-
#Partially deleted in new
chr5	173718840	173719692	ENSG00000253686.1|LINC01484|lncRNA|chr5:173718840:173719692:-	0	-
#Partially deleted in new
chr5	173719245	173719543	ENSG00000253686.1|LINC01484|lncRNA|chr5:173719245:173719543:-	0	-
#Deleted in new
chr5	173746019	173746209	ENSG00000253686.1|LINC01484|lncRNA|chr5:173746019:173746209:-	0	-
#Deleted in new
chr5	173746019	173746211	ENSG00000253686.1|LINC01484|lncRNA|chr5:173746019:173746211:-	0	-
#Deleted in new
chr5	173788362	173788413	ENSG00000254211.5|LINC01485|lncRNA|chr5:173788362:173788413:-	0	-
#Partially deleted in new
chr5	173790458	173790924	ENSG00000254211.5|LINC01485|lncRNA|chr5:173790458:173790924:-	0	-
#Deleted in new
chr5	173790635	173790727	ENSG00000254211.5|LINC01485|lncRNA|chr5:173790635:173790727:-	0	-
#Deleted in new
chr5	173790808	173790870	ENSG00000254211.5|LINC01485|lncRNA|chr5:173790808:173790870:-	0	-
#Deleted in new
chr5	173790808	173790925	ENSG00000254211.5|LINC01485|lncRNA|chr5:173790808:173790925:-	0	-
#Deleted in new
chr5	173790808	173790942	ENSG00000254211.5|LINC01485|lncRNA|chr5:173790808:173790942:-	0	-
#Deleted in new
chr5	173807790	173807881	ENSG00000254211.5|LINC01485|lncRNA|chr5:173807790:173807881:-	0	-
#Deleted in new
chr5	173808729	173809039	ENSG00000254211.5|LINC01485|lncRNA|chr5:173808729:173809039:-	0	-
#Partially deleted in new
chr5	17384842	17385440	ENSG00000250822.1|LINC02111|lncRNA|chr5:17384842:17385440:-	0	-
#Deleted in new
chr5	17387201	17387310	ENSG00000250822.1|LINC02111|lncRNA|chr5:17387201:17387310:-	0	-
#Deleted in new
chr5	173893050	173893183	ENSG00000113742.12|CPEB4|pc|chr5:173893050:173893183:+	0	+
#Deleted in new
chr5	173893077	173893183	ENSG00000113742.12|CPEB4|pc|chr5:173893077:173893183:+	0	+
#Deleted in new
chr5	173973778	173973890	ENSG00000185056.9|C5orf47|pc|chr5:173973778:173973890:+	0	+
#Deleted in new
chr5	173985726	173985850	ENSG00000185056.9|C5orf47|pc|chr5:173985726:173985850:+	0	+
#Deleted in new
chr5	174004270	174005196	ENSG00000185056.9|C5orf47|pc|chr5:174004270:174005196:+	0	+
#Deleted in new
chr5	17404018	17404088	ENSG00000248455.5|LINC02217|lncRNA|chr5:17404018:17404088:+	0	+
#Deleted in new
chr5	17404145	17404351	ENSG00000248455.5|LINC02217|lncRNA|chr5:17404145:17404351:+	0	+
#Deleted in new
chr5	174062571	174062645	ENSG00000170091.10|HGNC:24955|pc|chr5:174062571:174062645:+	0	+
#Deleted in new
chr5	174081505	174081619	ENSG00000253447.5|AC113423.2|lncRNA|chr5:174081505:174081619:-	0	-
#Deleted in new
chr5	174081517	174081619	ENSG00000253447.5|AC113423.2|lncRNA|chr5:174081517:174081619:-	0	-
#Deleted in new
chr5	174181601	174181814	ENSG00000254011.1|AC011333.1|lncRNA|chr5:174181601:174181814:+	0	+
#Deleted in new
chr5	174242681	174243501	ENSG00000170091.10|HGNC:24955|pc|chr5:174242681:174243501:+	0	+
#Deleted in new
chr5	17441468	17441678	ENSG00000248455.5|LINC02217|lncRNA|chr5:17441468:17441678:+	0	+
#Deleted in new
chr5	17441468	17441694	ENSG00000248455.5|LINC02217|lncRNA|chr5:17441468:17441694:+	0	+
#Partially deleted in new
chr5	17445626	17445930	ENSG00000249662.5|LINC02218|lncRNA|chr5:17445626:17445930:+	0	+
#Deleted in new
chr5	174517758	174517905	ENSG00000249306.5|LINC01411|lncRNA|chr5:174517758:174517905:+	0	+
#Partially deleted in new
chr5	174520424	174520665	ENSG00000249306.5|LINC01411|lncRNA|chr5:174520424:174520665:+	0	+
#Deleted in new
chr5	174524061	174524161	ENSG00000249306.5|LINC01411|lncRNA|chr5:174524061:174524161:+	0	+
#Deleted in new
chr5	174528366	174529982	ENSG00000249306.5|LINC01411|lncRNA|chr5:174528366:174529982:+	0	+
#Deleted in new
chr5	174531329	174531403	ENSG00000249306.5|LINC01411|lncRNA|chr5:174531329:174531403:+	0	+
#Deleted in new
chr5	174751303	174751353	ENSG00000251670.1|AC113346.2|lncRNA|chr5:174751303:174751353:+	0	+
#Deleted in new
chr5	174820026	174820110	ENSG00000251144.1|AC113346.1|lncRNA|chr5:174820026:174820110:+	0	+
#Deleted in new
chr5	174826121	174826324	ENSG00000251144.1|AC113346.1|lncRNA|chr5:174826121:174826324:+	0	+
#Deleted in new
chr5	174847609	174847723	ENSG00000251670.1|AC113346.2|lncRNA|chr5:174847609:174847723:+	0	+
#Deleted in new
chr5	174848964	174848998	ENSG00000251670.1|AC113346.2|lncRNA|chr5:174848964:174848998:+	0	+
#Deleted in new
chr5	174850466	174850725	ENSG00000251670.1|AC113346.2|lncRNA|chr5:174850466:174850725:+	0	+
#Deleted in new
chr5	174919081	174919725	ENSG00000204754.3|LINC01951|lncRNA|chr5:174919081:174919725:-	0	-
#Deleted in new
chr5	174976448	174976532	ENSG00000204754.3|LINC01951|lncRNA|chr5:174976448:174976532:-	0	-
#Deleted in new
chr5	174986294	174986406	ENSG00000249403.1|AC008413.2|lncRNA|chr5:174986294:174986406:+	0	+
#Deleted in new
chr5	174986820	174987050	ENSG00000249403.1|AC008413.2|lncRNA|chr5:174986820:174987050:+	0	+
#Deleted in new
chr5	175477061	175477190	ENSG00000164466.12|SFXN1|pc|chr5:175477061:175477190:+	0	+
#Deleted in new
chr5	175478394	175478639	ENSG00000164466.12|SFXN1|pc|chr5:175478394:175478639:+	0	+
#Deleted in new
chr5	175478563	175478639	ENSG00000164466.12|SFXN1|pc|chr5:175478563:175478639:+	0	+
#Deleted in new
chr5	175478564	175478639	ENSG00000164466.12|SFXN1|pc|chr5:175478564:175478639:+	0	+
#Deleted in new
chr5	175478565	175478639	ENSG00000164466.12|SFXN1|pc|chr5:175478565:175478639:+	0	+
#Deleted in new
chr5	175478574	175478639	ENSG00000164466.12|SFXN1|pc|chr5:175478574:175478639:+	0	+
#Deleted in new
chr5	175478589	175478667	ENSG00000164466.12|SFXN1|pc|chr5:175478589:175478667:+	0	+
#Deleted in new
chr5	175478590	175478639	ENSG00000164466.12|SFXN1|pc|chr5:175478590:175478639:+	0	+
#Deleted in new
chr5	175478591	175478639	ENSG00000164466.12|SFXN1|pc|chr5:175478591:175478639:+	0	+
#Partially deleted in new
chr5	175522374	175524103	ENSG00000164466.12|SFXN1|pc|chr5:175522374:175524103:+	0	+
#Deleted in new
chr5	175525791	175525965	ENSG00000164466.12|SFXN1|pc|chr5:175525791:175525965:+	0	+
#Deleted in new
chr5	175805443	175805621	ENSG00000145920.14|CPLX2|pc|chr5:175805443:175805621:+	0	+
#Deleted in new
chr5	175903873	175904371	ENSG00000280068.1|AC138965.3|lncRNA|chr5:175903873:175904371:-	0	-
#Deleted in new
chr5	175906938	175907419	ENSG00000250820.1|AC138965.2|lncRNA|chr5:175906938:175907419:-	0	-
#Deleted in new
chr5	175917872	175918172	ENSG00000051596.9|THOC3|pc|chr5:175917872:175918172:-	0	-
#Deleted in new
chr5	175926558	175926741	ENSG00000051596.9|THOC3|pc|chr5:175926558:175926741:-	0	-
#Deleted in new
chr5	175972610	175972668	ENSG00000250801.1|AC138965.1|lncRNA|chr5:175972610:175972668:+	0	+
#Deleted in new
chr5	175972614	175972952	ENSG00000250801.1|AC138965.1|lncRNA|chr5:175972614:175972952:+	0	+
#Deleted in new
chr5	175972621	175972952	ENSG00000250801.1|AC138965.1|lncRNA|chr5:175972621:175972952:+	0	+
#Deleted in new
chr5	175972904	175972952	ENSG00000250801.1|AC138965.1|lncRNA|chr5:175972904:175972952:+	0	+
#Deleted in new
chr5	175979166	175979236	ENSG00000250801.1|AC138965.1|lncRNA|chr5:175979166:175979236:+	0	+
#Deleted in new
chr5	175979166	175979408	ENSG00000250801.1|AC138965.1|lncRNA|chr5:175979166:175979408:+	0	+
#Deleted in new
chr5	175985647	175985856	ENSG00000250801.1|AC138965.1|lncRNA|chr5:175985647:175985856:+	0	+
#Deleted in new
chr5	176011008	176011099	ENSG00000051596.9|THOC3|pc|chr5:176011008:176011099:-	0	-
#Deleted in new
chr5	176034565	176034606	ENSG00000051596.9|THOC3|pc|chr5:176034565:176034606:-	0	-
#Deleted in new
chr5	176034565	176034612	ENSG00000051596.9|THOC3|pc|chr5:176034565:176034612:-	0	-
#Deleted in new
chr5	176034565	176034680	ENSG00000051596.9|THOC3|pc|chr5:176034565:176034680:-	0	-
#Deleted in new
chr5	176042298	176042878	ENSG00000250992.1|AC139491.3|lncRNA|chr5:176042298:176042878:+	0	+
#Split in new
chr5	176049677	176050732	ENSG00000248469.1|AC139491.1|lncRNA|chr5:176049677:176050732:-	0	-
#Deleted in new
chr5	176060688	176060803	ENSG00000182230.11|FAM153B|pc|chr5:176060688:176060803:+	0	+
#Deleted in new
chr5	176060722	176060803	ENSG00000182230.11|FAM153B|pc|chr5:176060722:176060803:+	0	+
#Deleted in new
chr5	176061121	176061268	ENSG00000182230.11|FAM153B|pc|chr5:176061121:176061268:+	0	+
#Deleted in new
chr5	176061254	176061343	ENSG00000182230.11|FAM153B|pc|chr5:176061254:176061343:+	0	+
#Deleted in new
chr5	176061694	176062021	ENSG00000248469.1|AC139491.1|lncRNA|chr5:176061694:176062021:-	0	-
#Deleted in new
chr5	176062534	176062634	ENSG00000182230.11|FAM153B|pc|chr5:176062534:176062634:+	0	+
#Deleted in new
chr5	176063367	176063764	ENSG00000182230.11|FAM153B|pc|chr5:176063367:176063764:+	0	+
#Deleted in new
chr5	176063536	176063764	ENSG00000182230.11|FAM153B|pc|chr5:176063536:176063764:+	0	+
#Deleted in new
chr5	176063708	176063764	ENSG00000182230.11|FAM153B|pc|chr5:176063708:176063764:+	0	+
#Deleted in new
chr5	176063747	176063764	ENSG00000182230.11|FAM153B|pc|chr5:176063747:176063764:+	0	+
#Deleted in new
chr5	176064497	176064718	ENSG00000182230.11|FAM153B|pc|chr5:176064497:176064718:+	0	+
#Deleted in new
chr5	176070966	176070997	ENSG00000182230.11|FAM153B|pc|chr5:176070966:176070997:+	0	+
#Deleted in new
chr5	176074635	176074829	ENSG00000182230.11|FAM153B|pc|chr5:176074635:176074829:+	0	+
#Deleted in new
chr5	176074635	176075219	ENSG00000182230.11|FAM153B|pc|chr5:176074635:176075219:+	0	+
#Deleted in new
chr5	176084845	176084993	ENSG00000182230.11|FAM153B|pc|chr5:176084845:176084993:+	0	+
#Deleted in new
chr5	176084855	176084993	ENSG00000182230.11|FAM153B|pc|chr5:176084855:176084993:+	0	+
#Deleted in new
chr5	176084905	176084993	ENSG00000182230.11|FAM153B|pc|chr5:176084905:176084993:+	0	+
#Deleted in new
chr5	176084962	176084993	ENSG00000182230.11|FAM153B|pc|chr5:176084962:176084993:+	0	+
#Deleted in new
chr5	176087111	176087205	ENSG00000182230.11|FAM153B|pc|chr5:176087111:176087205:+	0	+
#Deleted in new
chr5	176087111	176087255	ENSG00000182230.11|FAM153B|pc|chr5:176087111:176087255:+	0	+
#Deleted in new
chr5	176089462	176089521	ENSG00000182230.11|FAM153B|pc|chr5:176089462:176089521:+	0	+
#Deleted in new
chr5	176090369	176090394	ENSG00000182230.11|FAM153B|pc|chr5:176090369:176090394:+	0	+
#Deleted in new
chr5	176090369	176090439	ENSG00000182230.11|FAM153B|pc|chr5:176090369:176090439:+	0	+
#Deleted in new
chr5	176090369	176090610	ENSG00000182230.11|FAM153B|pc|chr5:176090369:176090610:+	0	+
#Deleted in new
chr5	176090369	176090709	ENSG00000182230.11|FAM153B|pc|chr5:176090369:176090709:+	0	+
#Deleted in new
chr5	176090369	176090796	ENSG00000182230.11|FAM153B|pc|chr5:176090369:176090796:+	0	+
#Deleted in new
chr5	176093194	176093274	ENSG00000182230.11|FAM153B|pc|chr5:176093194:176093274:+	0	+
#Deleted in new
chr5	176093743	176093768	ENSG00000182230.11|FAM153B|pc|chr5:176093743:176093768:+	0	+
#Deleted in new
chr5	176096823	176096900	ENSG00000182230.11|FAM153B|pc|chr5:176096823:176096900:+	0	+
#Deleted in new
chr5	176097354	176097379	ENSG00000182230.11|FAM153B|pc|chr5:176097354:176097379:+	0	+
#Deleted in new
chr5	176097799	176097965	ENSG00000182230.11|FAM153B|pc|chr5:176097799:176097965:+	0	+
#Deleted in new
chr5	176098487	176098558	ENSG00000182230.11|FAM153B|pc|chr5:176098487:176098558:+	0	+
#Deleted in new
chr5	176099020	176099045	ENSG00000182230.11|FAM153B|pc|chr5:176099020:176099045:+	0	+
#Deleted in new
chr5	176101046	176101117	ENSG00000182230.11|FAM153B|pc|chr5:176101046:176101117:+	0	+
#Deleted in new
chr5	176101550	176101581	ENSG00000182230.11|FAM153B|pc|chr5:176101550:176101581:+	0	+
#Deleted in new
chr5	176103226	176103297	ENSG00000182230.11|FAM153B|pc|chr5:176103226:176103297:+	0	+
#Deleted in new
chr5	176103755	176103780	ENSG00000182230.11|FAM153B|pc|chr5:176103755:176103780:+	0	+
#Deleted in new
chr5	176106058	176106129	ENSG00000182230.11|FAM153B|pc|chr5:176106058:176106129:+	0	+
#Deleted in new
chr5	176106559	176106590	ENSG00000182230.11|FAM153B|pc|chr5:176106559:176106590:+	0	+
#Deleted in new
chr5	176108604	176108675	ENSG00000182230.11|FAM153B|pc|chr5:176108604:176108675:+	0	+
#Deleted in new
chr5	176109106	176109137	ENSG00000182230.11|FAM153B|pc|chr5:176109106:176109137:+	0	+
#Deleted in new
chr5	176109106	176109589	ENSG00000182230.11|FAM153B|pc|chr5:176109106:176109589:+	0	+
#Deleted in new
chr5	176113151	176113378	ENSG00000182230.11|FAM153B|pc|chr5:176113151:176113378:+	0	+
#Deleted in new
chr5	176113340	176113378	ENSG00000182230.11|FAM153B|pc|chr5:176113340:176113378:+	0	+
#Deleted in new
chr5	176113799	176113867	ENSG00000182230.11|FAM153B|pc|chr5:176113799:176113867:+	0	+
#Deleted in new
chr5	176113955	176114061	ENSG00000182230.11|FAM153B|pc|chr5:176113955:176114061:+	0	+
#Deleted in new
chr5	176113955	176114211	ENSG00000182230.11|FAM153B|pc|chr5:176113955:176114211:+	0	+
#Deleted in new
chr5	176113955	176114798	ENSG00000182230.11|FAM153B|pc|chr5:176113955:176114798:+	0	+
#Deleted in new
chr5	176115592	176115778	ENSG00000182230.11|FAM153B|pc|chr5:176115592:176115778:+	0	+
#Deleted in new
chr5	176115592	176115867	ENSG00000182230.11|FAM153B|pc|chr5:176115592:176115867:+	0	+
#Deleted in new
chr5	176115592	176116015	ENSG00000182230.11|FAM153B|pc|chr5:176115592:176116015:+	0	+
#Deleted in new
chr5	176115592	176116252	ENSG00000182230.11|FAM153B|pc|chr5:176115592:176116252:+	0	+
#Deleted in new
chr5	176119814	176120001	ENSG00000182230.11|FAM153B|pc|chr5:176119814:176120001:+	0	+
#Deleted in new
chr5	176121064	176121148	ENSG00000182230.11|FAM153B|pc|chr5:176121064:176121148:+	0	+
#Deleted in new
chr5	176121744	176121814	ENSG00000182230.11|FAM153B|pc|chr5:176121744:176121814:+	0	+
#Partially deleted in new
chr5	176125019	176126959	ENSG00000182230.11|FAM153B|pc|chr5:176125019:176126959:+	0	+
#Partially deleted in new
chr5	176130085	176132258	ENSG00000182230.11|FAM153B|pc|chr5:176130085:176132258:+	0	+
#Deleted in new
chr5	176131281	176131461	ENSG00000251458.1|AC139491.4|lncRNA|chr5:176131281:176131461:-	0	-
#Deleted in new
chr5	176137156	176137278	ENSG00000251623.1|AC139491.5|lncRNA|chr5:176137156:176137278:+	0	+
#Deleted in new
chr5	176143084	176143626	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176143084:176143626:-	0	-
#Deleted in new
chr5	176171752	176171863	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176171752:176171863:-	0	-
#Deleted in new
chr5	176173344	176173563	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176173344:176173563:-	0	-
#Deleted in new
chr5	176173352	176173563	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176173352:176173563:-	0	-
#Deleted in new
chr5	176173505	176173563	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176173505:176173563:-	0	-
#Deleted in new
chr5	176174973	176175060	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176174973:176175060:-	0	-
#Deleted in new
chr5	176174973	176175060	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176174973:176175060:-	0	-
#Deleted in new
chr5	176175147	176175212	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176175147:176175212:-	0	-
#Deleted in new
chr5	176175147	176175212	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176175147:176175212:-	0	-
#Deleted in new
chr5	176175147	176175393	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176175147:176175393:-	0	-
#Deleted in new
chr5	176175833	176175901	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176175833:176175901:-	0	-
#Deleted in new
chr5	176175833	176175901	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176175833:176175901:-	0	-
#Deleted in new
chr5	176176281	176176450	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176176281:176176450:-	0	-
#Deleted in new
chr5	176176281	176176450	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176176281:176176450:-	0	-
#Deleted in new
chr5	176176519	176176823	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176176519:176176823:-	0	-
#Deleted in new
chr5	176176758	176176823	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176176758:176176823:-	0	-
#Deleted in new
chr5	176176758	176176823	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176176758:176176823:-	0	-
#Deleted in new
chr5	176180006	176180348	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176180006:176180348:-	0	-
#Deleted in new
chr5	176180323	176180348	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176180323:176180348:-	0	-
#Deleted in new
chr5	176180323	176180348	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176180323:176180348:-	0	-
#Deleted in new
chr5	176182619	176182763	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176182619:176182763:-	0	-
#Deleted in new
chr5	176182684	176182763	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176182684:176182763:-	0	-
#Deleted in new
chr5	176182684	176182763	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176182684:176182763:-	0	-
#Deleted in new
chr5	176183230	176183301	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176183230:176183301:-	0	-
#Deleted in new
chr5	176183230	176183301	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176183230:176183301:-	0	-
#Deleted in new
chr5	176185100	176185155	ENSG00000248596.7|AC139491.2|lncRNA|chr5:176185100:176185155:-	0	-
#Deleted in new
chr5	176185100	176185156	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176185100:176185156:-	0	-
#Deleted in new
chr5	176185100	176185180	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176185100:176185180:-	0	-
#Deleted in new
chr5	176185100	176185342	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176185100:176185342:-	0	-
#Deleted in new
chr5	176186161	176186380	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176186161:176186380:-	0	-
#Deleted in new
chr5	176187402	176187596	ENSG00000283235.1|AC139493.2|lncRNA|chr5:176187402:176187596:-	0	-
#Deleted in new
chr5	176261027	176261149	ENSG00000170085.17|SIMC1|pc|chr5:176261027:176261149:+	0	+
#Deleted in new
chr5	176263416	176263502	ENSG00000170085.17|SIMC1|pc|chr5:176263416:176263502:+	0	+
#Deleted in new
chr5	176270229	176270520	ENSG00000170085.17|SIMC1|pc|chr5:176270229:176270520:+	0	+
#Deleted in new
chr5	176270390	176270520	ENSG00000170085.17|SIMC1|pc|chr5:176270390:176270520:+	0	+
#Deleted in new
chr5	176313079	176313484	ENSG00000170085.17|SIMC1|pc|chr5:176313079:176313484:+	0	+
#Deleted in new
chr5	176353195	176353428	ENSG00000122203.14|KIAA1191|pc|chr5:176353195:176353428:-	0	-
#Deleted in new
chr5	176353254	176353584	ENSG00000250909.1|AC138956.1|lncRNA|chr5:176353254:176353584:+	0	+
#Deleted in new
chr5	176354205	176354561	ENSG00000251414.1|AC138956.2|lncRNA|chr5:176354205:176354561:+	0	+
#Deleted in new
chr5	176357175	176357273	ENSG00000122203.14|KIAA1191|pc|chr5:176357175:176357273:-	0	-
#Split in new
chr5	176371721	176381909	ENSG00000175414.6|ARL10|pc|chr5:176371721:176381909:+	0	+
#Partially deleted in new
chr5	176384642	176385327	ENSG00000048162.20|NOP16|pc|chr5:176384642:176385327:-	0	-
#Deleted in new
chr5	176401740	176401865	ENSG00000175414.6|ARL10|pc|chr5:176401740:176401865:+	0	+
#Deleted in new
chr5	176406156	176406340	ENSG00000175416.12|CLTB|pc|chr5:176406156:176406340:-	0	-
#Partially deleted in new
chr5	176407552	176407591	ENSG00000175416.12|CLTB|pc|chr5:176407552:176407591:-	0	-
#Deleted in new
chr5	176439089	176439238	ENSG00000280139.1|AC010297.1|lncRNA|chr5:176439089:176439238:+	0	+
#Deleted in new
chr5	176543540	176543717	ENSG00000074276.10|CDHR2|pc|chr5:176543540:176543717:+	0	+
#Deleted in new
chr5	176566945	176567114	ENSG00000074276.10|CDHR2|pc|chr5:176566945:176567114:+	0	+
#Deleted in new
chr5	176641671	176641778	ENSG00000175766.11|EIF4E1B|pc|chr5:176641671:176641778:+	0	+
#Deleted in new
chr5	176642042	176642165	ENSG00000175766.11|EIF4E1B|pc|chr5:176642042:176642165:+	0	+
#Deleted in new
chr5	176642042	176642177	ENSG00000175766.11|EIF4E1B|pc|chr5:176642042:176642177:+	0	+
#Deleted in new
chr5	176644579	176644611	ENSG00000175766.11|EIF4E1B|pc|chr5:176644579:176644611:+	0	+
#Partially deleted in new
chr5	176645865	176646607	ENSG00000175766.11|EIF4E1B|pc|chr5:176645865:176646607:+	0	+
#Partially deleted in new
chr5	176645865	176646641	ENSG00000175766.11|EIF4E1B|pc|chr5:176645865:176646641:+	0	+
#Deleted in new
chr5	176707355	176707714	ENSG00000248484.1|AC113391.1|lncRNA|chr5:176707355:176707714:-	0	-
#Deleted in new
chr5	176728451	176728734	ENSG00000251446.1|AC113391.2|lncRNA|chr5:176728451:176728734:-	0	-
#Deleted in new
chr5	176728999	176729072	ENSG00000251446.1|AC113391.2|lncRNA|chr5:176728999:176729072:-	0	-
#Deleted in new
chr5	17684583	17684687	ENSG00000249937.5|LINC02223|lncRNA|chr5:17684583:17684687:+	0	+
#Deleted in new
chr5	176919169	176919251	ENSG00000087206.16|UIMC1|pc|chr5:176919169:176919251:-	0	-
#Deleted in new
chr5	176980120	176980276	ENSG00000087206.16|UIMC1|pc|chr5:176980120:176980276:-	0	-
#Deleted in new
chr5	177001416	177001501	ENSG00000087206.16|UIMC1|pc|chr5:177001416:177001501:-	0	-
#Deleted in new
chr5	177001997	177002111	ENSG00000087206.16|UIMC1|pc|chr5:177001997:177002111:-	0	-
#Deleted in new
chr5	177006283	177006365	ENSG00000087206.16|UIMC1|pc|chr5:177006283:177006365:-	0	-
#Deleted in new
chr5	177006283	177006408	ENSG00000087206.16|UIMC1|pc|chr5:177006283:177006408:-	0	-
#Deleted in new
chr5	177006538	177006570	ENSG00000087206.16|UIMC1|pc|chr5:177006538:177006570:-	0	-
#Deleted in new
chr5	177006538	177006581	ENSG00000087206.16|UIMC1|pc|chr5:177006538:177006581:-	0	-
#Deleted in new
chr5	177006649	177006714	ENSG00000087206.16|UIMC1|pc|chr5:177006649:177006714:-	0	-
#Deleted in new
chr5	177006649	177006715	ENSG00000087206.16|UIMC1|pc|chr5:177006649:177006715:-	0	-
#Deleted in new
chr5	177006649	177006751	ENSG00000087206.16|UIMC1|pc|chr5:177006649:177006751:-	0	-
#Deleted in new
chr5	177051713	177051888	ENSG00000251666.1|ZNF346-IT1|lncRNA|chr5:177051713:177051888:+	0	+
#Deleted in new
chr5	177079381	177080554	ENSG00000113761.11|ZNF346|pc|chr5:177079381:177080554:+	0	+
#Deleted in new
chr5	177079381	177081189	ENSG00000113761.11|ZNF346|pc|chr5:177079381:177081189:+	0	+
#Deleted in new
chr5	177088238	177088514	ENSG00000160867.14|FGFR4|pc|chr5:177088238:177088514:+	0	+
#Deleted in new
chr5	177229764	177229886	ENSG00000165671.19|NSD1|pc|chr5:177229764:177229886:+	0	+
#Deleted in new
chr5	177439913	177440031	ENSG00000246334.2|PRR7-AS1|lncRNA|chr5:177439913:177440031:-	0	-
#Deleted in new
chr5	177501906	177503392	ENSG00000146094.13|DOK3|pc|chr5:177501906:177503392:-	0	-
#Deleted in new
chr5	177502087	177503392	ENSG00000146094.13|DOK3|pc|chr5:177502087:177503392:-	0	-
#Deleted in new
chr5	177522954	177522999	ENSG00000146067.15|FAM193B|pc|chr5:177522954:177522999:-	0	-
#Deleted in new
chr5	177523158	177523265	ENSG00000146067.15|FAM193B|pc|chr5:177523158:177523265:-	0	-
#Deleted in new
chr5	177523162	177523265	ENSG00000146067.15|FAM193B|pc|chr5:177523162:177523265:-	0	-
#Deleted in new
chr5	177523179	177523306	ENSG00000146067.15|FAM193B|pc|chr5:177523179:177523306:-	0	-
#Partially deleted in new
chr5	177601425	177601503	ENSG00000027847.13|B4GALT7|pc|chr5:177601425:177601503:+	0	+
#Deleted in new
chr5	177605044	177605224	ENSG00000027847.13|B4GALT7|pc|chr5:177605044:177605224:+	0	+
#Deleted in new
chr5	177682293	177682371	ENSG00000249849.1|AC138819.1|lncRNA|chr5:177682293:177682371:+	0	+
#Deleted in new
chr5	17768893	17768984	ENSG00000249937.5|LINC02223|lncRNA|chr5:17768893:17768984:+	0	+
#Deleted in new
chr5	177706705	177706885	ENSG00000249849.1|AC138819.1|lncRNA|chr5:177706705:177706885:+	0	+
#Partially deleted in new
chr5	177711068	177713170	ENSG00000170074.19|FAM153A|pc|chr5:177711068:177713170:-	0	-
#Deleted in new
chr5	177716344	177716363	ENSG00000170074.19|FAM153A|pc|chr5:177716344:177716363:-	0	-
#Deleted in new
chr5	177716344	177716415	ENSG00000170074.19|FAM153A|pc|chr5:177716344:177716415:-	0	-
#Deleted in new
chr5	177718146	177718333	ENSG00000170074.19|FAM153A|pc|chr5:177718146:177718333:-	0	-
#Deleted in new
chr5	177721906	177722569	ENSG00000170074.19|FAM153A|pc|chr5:177721906:177722569:-	0	-
#Deleted in new
chr5	177722294	177722569	ENSG00000170074.19|FAM153A|pc|chr5:177722294:177722569:-	0	-
#Deleted in new
chr5	177722335	177722569	ENSG00000170074.19|FAM153A|pc|chr5:177722335:177722569:-	0	-
#Deleted in new
chr5	177722893	177723156	ENSG00000170074.19|FAM153A|pc|chr5:177722893:177723156:-	0	-
#Deleted in new
chr5	177723363	177724206	ENSG00000170074.19|FAM153A|pc|chr5:177723363:177724206:-	0	-
#Deleted in new
chr5	177723364	177724206	ENSG00000170074.19|FAM153A|pc|chr5:177723364:177724206:-	0	-
#Deleted in new
chr5	177723576	177724206	ENSG00000170074.19|FAM153A|pc|chr5:177723576:177724206:-	0	-
#Deleted in new
chr5	177723950	177724362	ENSG00000170074.19|FAM153A|pc|chr5:177723950:177724362:-	0	-
#Deleted in new
chr5	177724100	177724206	ENSG00000170074.19|FAM153A|pc|chr5:177724100:177724206:-	0	-
#Deleted in new
chr5	177724158	177724206	ENSG00000170074.19|FAM153A|pc|chr5:177724158:177724206:-	0	-
#Deleted in new
chr5	177724294	177724362	ENSG00000170074.19|FAM153A|pc|chr5:177724294:177724362:-	0	-
#Deleted in new
chr5	177724783	177724821	ENSG00000170074.19|FAM153A|pc|chr5:177724783:177724821:-	0	-
#Deleted in new
chr5	177729022	177729053	ENSG00000170074.19|FAM153A|pc|chr5:177729022:177729053:-	0	-
#Deleted in new
chr5	177729484	177729555	ENSG00000170074.19|FAM153A|pc|chr5:177729484:177729555:-	0	-
#Deleted in new
chr5	177731568	177731599	ENSG00000170074.19|FAM153A|pc|chr5:177731568:177731599:-	0	-
#Deleted in new
chr5	177731573	177731599	ENSG00000170074.19|FAM153A|pc|chr5:177731573:177731599:-	0	-
#Deleted in new
chr5	177732029	177732100	ENSG00000170074.19|FAM153A|pc|chr5:177732029:177732100:-	0	-
#Deleted in new
chr5	177734379	177734404	ENSG00000170074.19|FAM153A|pc|chr5:177734379:177734404:-	0	-
#Deleted in new
chr5	177734862	177734933	ENSG00000170074.19|FAM153A|pc|chr5:177734862:177734933:-	0	-
#Deleted in new
chr5	177736578	177736609	ENSG00000170074.19|FAM153A|pc|chr5:177736578:177736609:-	0	-
#Deleted in new
chr5	177737041	177737112	ENSG00000170074.19|FAM153A|pc|chr5:177737041:177737112:-	0	-
#Deleted in new
chr5	177737047	177737112	ENSG00000170074.19|FAM153A|pc|chr5:177737047:177737112:-	0	-
#Deleted in new
chr5	177739112	177739137	ENSG00000170074.19|FAM153A|pc|chr5:177739112:177739137:-	0	-
#Deleted in new
chr5	177739599	177739670	ENSG00000170074.19|FAM153A|pc|chr5:177739599:177739670:-	0	-
#Deleted in new
chr5	177739614	177739670	ENSG00000170074.19|FAM153A|pc|chr5:177739614:177739670:-	0	-
#Deleted in new
chr5	177739634	177739670	ENSG00000170074.19|FAM153A|pc|chr5:177739634:177739670:-	0	-
#Deleted in new
chr5	177740192	177740358	ENSG00000170074.19|FAM153A|pc|chr5:177740192:177740358:-	0	-
#Deleted in new
chr5	177740776	177740801	ENSG00000170074.19|FAM153A|pc|chr5:177740776:177740801:-	0	-
#Deleted in new
chr5	177741255	177741332	ENSG00000170074.19|FAM153A|pc|chr5:177741255:177741332:-	0	-
#Deleted in new
chr5	177741293	177741332	ENSG00000170074.19|FAM153A|pc|chr5:177741293:177741332:-	0	-
#Deleted in new
chr5	177744393	177744418	ENSG00000170074.19|FAM153A|pc|chr5:177744393:177744418:-	0	-
#Deleted in new
chr5	177744887	177744967	ENSG00000170074.19|FAM153A|pc|chr5:177744887:177744967:-	0	-
#Deleted in new
chr5	177745163	177745214	ENSG00000170074.19|FAM153A|pc|chr5:177745163:177745214:-	0	-
#Deleted in new
chr5	177747453	177747793	ENSG00000170074.19|FAM153A|pc|chr5:177747453:177747793:-	0	-
#Deleted in new
chr5	177747526	177747793	ENSG00000170074.19|FAM153A|pc|chr5:177747526:177747793:-	0	-
#Deleted in new
chr5	177747723	177747793	ENSG00000170074.19|FAM153A|pc|chr5:177747723:177747793:-	0	-
#Deleted in new
chr5	177747768	177747793	ENSG00000170074.19|FAM153A|pc|chr5:177747768:177747793:-	0	-
#Deleted in new
chr5	177747768	177747817	ENSG00000170074.19|FAM153A|pc|chr5:177747768:177747817:-	0	-
#Deleted in new
chr5	177748640	177748699	ENSG00000170074.19|FAM153A|pc|chr5:177748640:177748699:-	0	-
#Deleted in new
chr5	177750153	177750394	ENSG00000170074.19|FAM153A|pc|chr5:177750153:177750394:-	0	-
#Deleted in new
chr5	177750908	177751052	ENSG00000170074.19|FAM153A|pc|chr5:177750908:177751052:-	0	-
#Deleted in new
chr5	177750958	177751052	ENSG00000170074.19|FAM153A|pc|chr5:177750958:177751052:-	0	-
#Deleted in new
chr5	177753175	177753206	ENSG00000170074.19|FAM153A|pc|chr5:177753175:177753206:-	0	-
#Deleted in new
chr5	177753175	177753263	ENSG00000170074.19|FAM153A|pc|chr5:177753175:177753263:-	0	-
#Deleted in new
chr5	177753175	177753275	ENSG00000170074.19|FAM153A|pc|chr5:177753175:177753275:-	0	-
#Deleted in new
chr5	177753175	177753296	ENSG00000170074.19|FAM153A|pc|chr5:177753175:177753296:-	0	-
#Deleted in new
chr5	177753175	177753297	ENSG00000170074.19|FAM153A|pc|chr5:177753175:177753297:-	0	-
#Deleted in new
chr5	177762928	177763510	ENSG00000170074.19|FAM153A|pc|chr5:177762928:177763510:-	0	-
#Deleted in new
chr5	177763316	177763510	ENSG00000170074.19|FAM153A|pc|chr5:177763316:177763510:-	0	-
#Deleted in new
chr5	177767149	177767180	ENSG00000170074.19|FAM153A|pc|chr5:177767149:177767180:-	0	-
#Deleted in new
chr5	177779496	177779717	ENSG00000170074.19|FAM153A|pc|chr5:177779496:177779717:-	0	-
#Deleted in new
chr5	177779555	177779717	ENSG00000170074.19|FAM153A|pc|chr5:177779555:177779717:-	0	-
#Deleted in new
chr5	177780448	177780465	ENSG00000170074.19|FAM153A|pc|chr5:177780448:177780465:-	0	-
#Deleted in new
chr5	177780448	177780504	ENSG00000170074.19|FAM153A|pc|chr5:177780448:177780504:-	0	-
#Deleted in new
chr5	177780448	177780633	ENSG00000170074.19|FAM153A|pc|chr5:177780448:177780633:-	0	-
#Deleted in new
chr5	177780448	177780676	ENSG00000170074.19|FAM153A|pc|chr5:177780448:177780676:-	0	-
#Deleted in new
chr5	177780448	177780845	ENSG00000170074.19|FAM153A|pc|chr5:177780448:177780845:-	0	-
#Deleted in new
chr5	177781584	177781684	ENSG00000170074.19|FAM153A|pc|chr5:177781584:177781684:-	0	-
#Deleted in new
chr5	177782196	177782524	ENSG00000249109.1|AC140125.2|lncRNA|chr5:177782196:177782524:+	0	+
#Deleted in new
chr5	177782742	177782813	ENSG00000170074.19|FAM153A|pc|chr5:177782742:177782813:-	0	-
#Deleted in new
chr5	177782742	177782837	ENSG00000170074.19|FAM153A|pc|chr5:177782742:177782837:-	0	-
#Deleted in new
chr5	177782817	177782965	ENSG00000170074.19|FAM153A|pc|chr5:177782817:177782965:-	0	-
#Deleted in new
chr5	177783283	177783364	ENSG00000170074.19|FAM153A|pc|chr5:177783283:177783364:-	0	-
#Deleted in new
chr5	177783283	177783398	ENSG00000170074.19|FAM153A|pc|chr5:177783283:177783398:-	0	-
#Split in new
chr5	177793341	177794396	ENSG00000249109.1|AC140125.2|lncRNA|chr5:177793341:177794396:+	0	+
#Deleted in new
chr5	177801203	177801783	ENSG00000248943.1|AC140125.1|lncRNA|chr5:177801203:177801783:-	0	-
#Deleted in new
chr5	177857944	177858153	ENSG00000249186.1|AC140125.3|lncRNA|chr5:177857944:177858153:-	0	-
#Deleted in new
chr5	177864392	177864634	ENSG00000249186.1|AC140125.3|lncRNA|chr5:177864392:177864634:-	0	-
#Deleted in new
chr5	177864564	177864634	ENSG00000249186.1|AC140125.3|lncRNA|chr5:177864564:177864634:-	0	-
#Deleted in new
chr5	177870852	177870900	ENSG00000249186.1|AC140125.3|lncRNA|chr5:177870852:177870900:-	0	-
#Deleted in new
chr5	177870852	177871183	ENSG00000249186.1|AC140125.3|lncRNA|chr5:177870852:177871183:-	0	-
#Deleted in new
chr5	177870852	177871190	ENSG00000249186.1|AC140125.3|lncRNA|chr5:177870852:177871190:-	0	-
#Deleted in new
chr5	177871136	177871194	ENSG00000249186.1|AC140125.3|lncRNA|chr5:177871136:177871194:-	0	-
#Deleted in new
chr5	177950334	177950565	ENSG00000249684.5|AC106795.2|lncRNA|chr5:177950334:177950565:+	0	+
#Deleted in new
chr5	177951412	177951518	ENSG00000249684.5|AC106795.2|lncRNA|chr5:177951412:177951518:+	0	+
#Deleted in new
chr5	177951716	177951956	ENSG00000249684.5|AC106795.2|lncRNA|chr5:177951716:177951956:+	0	+
#Deleted in new
chr5	177951947	177951956	ENSG00000249684.5|AC106795.2|lncRNA|chr5:177951947:177951956:+	0	+
#Deleted in new
chr5	177953164	177953292	ENSG00000249684.5|AC106795.2|lncRNA|chr5:177953164:177953292:+	0	+
#Deleted in new
chr5	177957608	177957679	ENSG00000249684.5|AC106795.2|lncRNA|chr5:177957608:177957679:+	0	+
#Deleted in new
chr5	177957608	177957750	ENSG00000249684.5|AC106795.2|lncRNA|chr5:177957608:177957750:+	0	+
#Deleted in new
chr5	177957608	177957759	ENSG00000249684.5|AC106795.2|lncRNA|chr5:177957608:177957759:+	0	+
#Deleted in new
chr5	177959718	177960149	ENSG00000249684.5|AC106795.2|lncRNA|chr5:177959718:177960149:+	0	+
#Deleted in new
chr5	177963826	177963960	ENSG00000249684.5|AC106795.2|lncRNA|chr5:177963826:177963960:+	0	+
#Deleted in new
chr5	177967003	177967457	ENSG00000280207.1|AC106795.5|lncRNA|chr5:177967003:177967457:+	0	+
#Deleted in new
chr5	177982652	177983054	ENSG00000250101.1|AC106795.3|lncRNA|chr5:177982652:177983054:+	0	+
#Deleted in new
chr5	178006404	178006519	ENSG00000204677.10|FAM153C|pc|chr5:178006404:178006519:+	0	+
#Deleted in new
chr5	178006837	178006985	ENSG00000204677.10|FAM153C|pc|chr5:178006837:178006985:+	0	+
#Deleted in new
chr5	178006971	178007060	ENSG00000204677.10|FAM153C|pc|chr5:178006971:178007060:+	0	+
#Deleted in new
chr5	178006989	178007060	ENSG00000204677.10|FAM153C|pc|chr5:178006989:178007060:+	0	+
#Deleted in new
chr5	178008152	178008252	ENSG00000204677.10|FAM153C|pc|chr5:178008152:178008252:+	0	+
#Deleted in new
chr5	178008984	178009381	ENSG00000204677.10|FAM153C|pc|chr5:178008984:178009381:+	0	+
#Deleted in new
chr5	178009325	178009381	ENSG00000204677.10|FAM153C|pc|chr5:178009325:178009381:+	0	+
#Deleted in new
chr5	178010112	178010274	ENSG00000204677.10|FAM153C|pc|chr5:178010112:178010274:+	0	+
#Deleted in new
chr5	178010112	178010329	ENSG00000204677.10|FAM153C|pc|chr5:178010112:178010329:+	0	+
#Deleted in new
chr5	178016585	178016616	ENSG00000204677.10|FAM153C|pc|chr5:178016585:178016616:+	0	+
#Deleted in new
chr5	178020259	178020453	ENSG00000204677.10|FAM153C|pc|chr5:178020259:178020453:+	0	+
#Deleted in new
chr5	178030523	178030623	ENSG00000204677.10|FAM153C|pc|chr5:178030523:178030623:+	0	+
#Deleted in new
chr5	178030535	178030623	ENSG00000204677.10|FAM153C|pc|chr5:178030535:178030623:+	0	+
#Deleted in new
chr5	178032742	178032886	ENSG00000204677.10|FAM153C|pc|chr5:178032742:178032886:+	0	+
#Deleted in new
chr5	178035095	178035154	ENSG00000204677.10|FAM153C|pc|chr5:178035095:178035154:+	0	+
#Deleted in new
chr5	178036011	178036036	ENSG00000204677.10|FAM153C|pc|chr5:178036011:178036036:+	0	+
#Deleted in new
chr5	178036011	178036081	ENSG00000204677.10|FAM153C|pc|chr5:178036011:178036081:+	0	+
#Deleted in new
chr5	178038837	178038917	ENSG00000204677.10|FAM153C|pc|chr5:178038837:178038917:+	0	+
#Deleted in new
chr5	178039386	178039396	ENSG00000204677.10|FAM153C|pc|chr5:178039386:178039396:+	0	+
#Deleted in new
chr5	178039386	178039411	ENSG00000204677.10|FAM153C|pc|chr5:178039386:178039411:+	0	+
#Deleted in new
chr5	178041692	178041763	ENSG00000204677.10|FAM153C|pc|chr5:178041692:178041763:+	0	+
#Deleted in new
chr5	178042194	178042225	ENSG00000204677.10|FAM153C|pc|chr5:178042194:178042225:+	0	+
#Deleted in new
chr5	178046413	178046451	ENSG00000204677.10|FAM153C|pc|chr5:178046413:178046451:+	0	+
#Deleted in new
chr5	178046871	178046895	ENSG00000204677.10|FAM153C|pc|chr5:178046871:178046895:+	0	+
#Deleted in new
chr5	178046871	178046939	ENSG00000204677.10|FAM153C|pc|chr5:178046871:178046939:+	0	+
#Deleted in new
chr5	178046871	178047655	ENSG00000204677.10|FAM153C|pc|chr5:178046871:178047655:+	0	+
#Deleted in new
chr5	178047027	178047133	ENSG00000204677.10|FAM153C|pc|chr5:178047027:178047133:+	0	+
#Deleted in new
chr5	178047027	178047281	ENSG00000204677.10|FAM153C|pc|chr5:178047027:178047281:+	0	+
#Deleted in new
chr5	178048664	178048999	ENSG00000204677.10|FAM153C|pc|chr5:178048664:178048999:+	0	+
#Deleted in new
chr5	178048664	178049087	ENSG00000204677.10|FAM153C|pc|chr5:178048664:178049087:+	0	+
#Deleted in new
chr5	178048775	178049321	ENSG00000204677.10|FAM153C|pc|chr5:178048775:178049321:+	0	+
#Deleted in new
chr5	178052802	178052989	ENSG00000204677.10|FAM153C|pc|chr5:178052802:178052989:+	0	+
#Deleted in new
chr5	178054057	178054133	ENSG00000204677.10|FAM153C|pc|chr5:178054057:178054133:+	0	+
#Deleted in new
chr5	178054715	178054807	ENSG00000204677.10|FAM153C|pc|chr5:178054715:178054807:+	0	+
#Deleted in new
chr5	178054737	178054779	ENSG00000204677.10|FAM153C|pc|chr5:178054737:178054779:+	0	+
#Deleted in new
chr5	178054737	178054807	ENSG00000204677.10|FAM153C|pc|chr5:178054737:178054807:+	0	+
#Deleted in new
chr5	178055368	178055559	ENSG00000204677.10|FAM153C|pc|chr5:178055368:178055559:+	0	+
#Deleted in new
chr5	178133451	178133569	ENSG00000145916.18|RMND5B|pc|chr5:178133451:178133569:+	0	+
#Partially deleted in new
chr5	178141339	178142728	ENSG00000145916.18|RMND5B|pc|chr5:178141339:178142728:+	0	+
#Split in new
chr5	178211760	178211970	ENSG00000175309.14|PHYKPL|pc|chr5:178211760:178211970:-	0	-
#Partially deleted in new
chr5	178215275	178216991	ENSG00000175309.14|PHYKPL|pc|chr5:178215275:178216991:-	0	-
#Partially deleted in new
chr5	178225354	178226079	ENSG00000175309.14|PHYKPL|pc|chr5:178225354:178226079:-	0	-
#Deleted in new
chr5	178226465	178226698	ENSG00000175309.14|PHYKPL|pc|chr5:178226465:178226698:-	0	-
#Partially deleted in new
chr5	178230581	178230940	ENSG00000175309.14|PHYKPL|pc|chr5:178230581:178230940:-	0	-
#Deleted in new
chr5	178350866	178351199	ENSG00000253698.1|AC136601.1|lncRNA|chr5:178350866:178351199:+	0	+
#Deleted in new
chr5	178351917	178352250	ENSG00000253698.1|AC136601.1|lncRNA|chr5:178351917:178352250:+	0	+
#Deleted in new
chr5	17850258	17850373	ENSG00000249937.5|LINC02223|lncRNA|chr5:17850258:17850373:+	0	+
#Partially deleted in new
chr5	178561843	178562006	ENSG00000050767.15|COL23A1|pc|chr5:178561843:178562006:-	0	-
#Deleted in new
chr5	178562597	178562726	ENSG00000050767.15|COL23A1|pc|chr5:178562597:178562726:-	0	-
#Deleted in new
chr5	178605824	178605865	ENSG00000113240.12|CLK4|pc|chr5:178605824:178605865:-	0	-
#Deleted in new
chr5	178697585	178697695	ENSG00000169131.11|ZNF354A|pc|chr5:178697585:178697695:-	0	-
#Deleted in new
chr5	178706938	178707172	ENSG00000169131.11|ZNF354A|pc|chr5:178706938:178707172:-	0	-
#Deleted in new
chr5	178726074	178726227	ENSG00000169131.11|ZNF354A|pc|chr5:178726074:178726227:-	0	-
#Duplicated in new
chr5	178728989	178729383	ENSG00000169131.11|ZNF354A|pc|chr5:178728989:178729383:-	0	-
#Deleted in new
chr5	17873019	17873086	ENSG00000249937.5|LINC02223|lncRNA|chr5:17873019:17873086:+	0	+
#Deleted in new
chr5	178885613	178885733	ENSG00000178338.10|ZNF354B|pc|chr5:178885613:178885733:+	0	+
#Deleted in new
chr5	178885613	178885737	ENSG00000178338.10|ZNF354B|pc|chr5:178885613:178885737:+	0	+
#Deleted in new
chr5	178887608	178888122	ENSG00000178338.10|ZNF354B|pc|chr5:178887608:178888122:+	0	+
#Deleted in new
chr5	178887620	178888122	ENSG00000178338.10|ZNF354B|pc|chr5:178887620:178888122:+	0	+
#Deleted in new
chr5	178913877	178913999	ENSG00000198939.7|ZFP2|pc|chr5:178913877:178913999:+	0	+
#Deleted in new
chr5	178915684	178915771	ENSG00000198939.7|ZFP2|pc|chr5:178915684:178915771:+	0	+
#Deleted in new
chr5	178916564	178916710	ENSG00000198939.7|ZFP2|pc|chr5:178916564:178916710:+	0	+
#Deleted in new
chr5	178948101	178948116	ENSG00000178187.7|ZNF454|pc|chr5:178948101:178948116:+	0	+
#Deleted in new
chr5	179060414	179060666	ENSG00000177932.6|ZNF354C|pc|chr5:179060414:179060666:+	0	+
#Deleted in new
chr5	179062014	179062095	ENSG00000177932.6|ZNF354C|pc|chr5:179062014:179062095:+	0	+
#Deleted in new
chr5	179150887	179151200	ENSG00000087116.14|ADAMTS2|pc|chr5:179150887:179151200:-	0	-
#Deleted in new
chr5	179378535	179378761	ENSG00000253163.1|AC109479.1|lncRNA|chr5:179378535:179378761:-	0	-
#Partially deleted in new
chr5	179378705	179378865	ENSG00000253979.1|AC109479.3|lncRNA|chr5:179378705:179378865:+	0	+
#Deleted in new
chr5	179455414	179455817	ENSG00000250674.1|AC136628.1|lncRNA|chr5:179455414:179455817:+	0	+
#Deleted in new
chr5	179503321	179503740	ENSG00000253652.1|AC136628.4|lncRNA|chr5:179503321:179503740:-	0	-
#Deleted in new
chr5	179515463	179515579	ENSG00000253652.1|AC136628.4|lncRNA|chr5:179515463:179515579:-	0	-
#Deleted in new
chr5	179550	179754	ENSG00000153404.14|PLEKHG4B|pc|chr5:179550:179754:+	0	+
#Deleted in new
chr5	179555649	179555790	ENSG00000176783.14|RUFY1|pc|chr5:179555649:179555790:+	0	+
#Deleted in new
chr5	17955693	17955837	ENSG00000249937.5|LINC02223|lncRNA|chr5:17955693:17955837:+	0	+
#Deleted in new
chr5	17955693	17955857	ENSG00000249937.5|LINC02223|lncRNA|chr5:17955693:17955857:+	0	+
#Deleted in new
chr5	179590860	179590958	ENSG00000176783.14|RUFY1|pc|chr5:179590860:179590958:+	0	+
#Partially deleted in new
chr5	179595903	179596593	ENSG00000244945.1|AC136604.2|lncRNA|chr5:179595903:179596593:-	0	-
#Deleted in new
chr5	179596821	179596961	ENSG00000244945.1|AC136604.2|lncRNA|chr5:179596821:179596961:-	0	-
#Deleted in new
chr5	179598252	179598355	ENSG00000244945.1|AC136604.2|lncRNA|chr5:179598252:179598355:-	0	-
#Deleted in new
chr5	179599267	179599389	ENSG00000244945.1|AC136604.2|lncRNA|chr5:179599267:179599389:-	0	-
#Deleted in new
chr5	179599484	179599635	ENSG00000244945.1|AC136604.2|lncRNA|chr5:179599484:179599635:-	0	-
#Partially deleted in new
chr5	179601891	179602571	ENSG00000176783.14|RUFY1|pc|chr5:179601891:179602571:+	0	+
#Deleted in new
chr5	179602063	179602266	ENSG00000244945.1|AC136604.2|lncRNA|chr5:179602063:179602266:-	0	-
#Deleted in new
chr5	179602376	179602772	ENSG00000244945.1|AC136604.2|lncRNA|chr5:179602376:179602772:-	0	-
#Partially deleted in new
chr5	179605875	179606584	ENSG00000176783.14|RUFY1|pc|chr5:179605875:179606584:+	0	+
#Partially deleted in new
chr5	179607265	179607485	ENSG00000176783.14|RUFY1|pc|chr5:179607265:179607485:+	0	+
#Deleted in new
chr5	179608284	179608465	ENSG00000176783.14|RUFY1|pc|chr5:179608284:179608465:+	0	+
#Deleted in new
chr5	179633891	179634157	ENSG00000169045.17|HNRNPH1|pc|chr5:179633891:179634157:-	0	-
#Deleted in new
chr5	179634064	179634157	ENSG00000169045.17|HNRNPH1|pc|chr5:179634064:179634157:-	0	-
#Deleted in new
chr5	179634064	179634440	ENSG00000169045.17|HNRNPH1|pc|chr5:179634064:179634440:-	0	-
#Deleted in new
chr5	179634448	179634473	ENSG00000169045.17|HNRNPH1|pc|chr5:179634448:179634473:-	0	-
#Deleted in new
chr5	179634448	179634784	ENSG00000169045.17|HNRNPH1|pc|chr5:179634448:179634784:-	0	-
#Partially deleted in new
chr5	179641543	179641878	ENSG00000204661.9|C5orf60|pc|chr5:179641543:179641878:-	0	-
#Partially deleted in new
chr5	179641545	179641878	ENSG00000204661.9|C5orf60|pc|chr5:179641545:179641878:-	0	-
#Deleted in new
chr5	179641789	179641878	ENSG00000204661.9|C5orf60|pc|chr5:179641789:179641878:-	0	-
#Partially deleted in new
chr5	179642325	179642440	ENSG00000204661.9|C5orf60|pc|chr5:179642325:179642440:-	0	-
#Deleted in new
chr5	179657761	179658097	ENSG00000250999.1|AC136604.3|lncRNA|chr5:179657761:179658097:+	0	+
#Deleted in new
chr5	179658235	179658481	ENSG00000250999.1|AC136604.3|lncRNA|chr5:179658235:179658481:+	0	+
#Deleted in new
chr5	179658264	179658481	ENSG00000250999.1|AC136604.3|lncRNA|chr5:179658264:179658481:+	0	+
#Deleted in new
chr5	179658388	179658481	ENSG00000250999.1|AC136604.3|lncRNA|chr5:179658388:179658481:+	0	+
#Deleted in new
chr5	179662974	179663103	ENSG00000250999.1|AC136604.3|lncRNA|chr5:179662974:179663103:+	0	+
#Deleted in new
chr5	179664322	179664430	ENSG00000250999.1|AC136604.3|lncRNA|chr5:179664322:179664430:+	0	+
#Deleted in new
chr5	179664322	179664432	ENSG00000250999.1|AC136604.3|lncRNA|chr5:179664322:179664432:+	0	+
#Partially deleted in new
chr5	179700883	179701005	ENSG00000127022.14|CANX|pc|chr5:179700883:179701005:+	0	+
#Partially deleted in new
chr5	179704154	179704430	ENSG00000127022.14|CANX|pc|chr5:179704154:179704430:+	0	+
#Deleted in new
chr5	179715898	179716000	ENSG00000127022.14|CANX|pc|chr5:179715898:179716000:+	0	+
#Deleted in new
chr5	179811573	179811682	ENSG00000161011.19|SQSTM1|pc|chr5:179811573:179811682:+	0	+
#Deleted in new
chr5	179811614	179811682	ENSG00000161011.19|SQSTM1|pc|chr5:179811614:179811682:+	0	+
#Deleted in new
chr5	179840239	179840959	ENSG00000161010.14|MRNIP|pc|chr5:179840239:179840959:-	0	-
#Deleted in new
chr5	179840589	179840959	ENSG00000161010.14|MRNIP|pc|chr5:179840589:179840959:-	0	-
#Deleted in new
chr5	179840712	179840959	ENSG00000161010.14|MRNIP|pc|chr5:179840712:179840959:-	0	-
#Deleted in new
chr5	179840808	179840959	ENSG00000161010.14|MRNIP|pc|chr5:179840808:179840959:-	0	-
#Deleted in new
chr5	179840871	179840959	ENSG00000161010.14|MRNIP|pc|chr5:179840871:179840959:-	0	-
#Deleted in new
chr5	179840920	179840959	ENSG00000161010.14|MRNIP|pc|chr5:179840920:179840959:-	0	-
#Deleted in new
chr5	179841268	179841370	ENSG00000161010.14|MRNIP|pc|chr5:179841268:179841370:-	0	-
#Partially deleted in new
chr5	179847356	179848066	ENSG00000161010.14|MRNIP|pc|chr5:179847356:179848066:-	0	-
#Deleted in new
chr5	179851092	179851424	ENSG00000161010.14|MRNIP|pc|chr5:179851092:179851424:-	0	-
#Deleted in new
chr5	179851242	179851337	ENSG00000161010.14|MRNIP|pc|chr5:179851242:179851337:-	0	-
#Deleted in new
chr5	179851242	179851424	ENSG00000161010.14|MRNIP|pc|chr5:179851242:179851424:-	0	-
#Deleted in new
chr5	179859012	179859212	ENSG00000245317.2|AC008393.1|lncRNA|chr5:179859012:179859212:+	0	+
#Deleted in new
chr5	179860029	179861283	ENSG00000245317.2|AC008393.1|lncRNA|chr5:179860029:179861283:+	0	+
#Deleted in new
chr5	179860513	179860707	ENSG00000161010.14|MRNIP|pc|chr5:179860513:179860707:-	0	-
#Deleted in new
chr5	179861960	179862173	ENSG00000161010.14|MRNIP|pc|chr5:179861960:179862173:-	0	-
#Deleted in new
chr5	179884368	179884537	ENSG00000197226.12|TBC1D9B|pc|chr5:179884368:179884537:-	0	-
#Deleted in new
chr5	179887670	179887904	ENSG00000197226.12|TBC1D9B|pc|chr5:179887670:179887904:-	0	-
#Partially deleted in new
chr5	1799076	1799750	ENSG00000171421.12|MRPL36|pc|chr5:1799076:1799750:-	0	-
#Deleted in new
chr5	180115246	180115284	ENSG00000146090.15|RASGEF1C|pc|chr5:180115246:180115284:-	0	-
#Deleted in new
chr5	180115367	180115400	ENSG00000146090.15|RASGEF1C|pc|chr5:180115367:180115400:-	0	-
#Deleted in new
chr5	180135217	180135312	ENSG00000146090.15|RASGEF1C|pc|chr5:180135217:180135312:-	0	-
#Deleted in new
chr5	180253506	180253677	ENSG00000050748.17|MAPK9|pc|chr5:180253506:180253677:-	0	-
#Deleted in new
chr5	180295034	180295253	ENSG00000248367.1|AC008610.1|lncRNA|chr5:180295034:180295253:+	0	+
#Deleted in new
chr5	180442729	180443238	ENSG00000250509.1|AC034213.1|lncRNA|chr5:180442729:180443238:+	0	+
#Deleted in new
chr5	180607964	180608284	ENSG00000037280.15|FLT4|pc|chr5:180607964:180608284:-	0	-
#Deleted in new
chr5	180607967	180608159	ENSG00000037280.15|FLT4|pc|chr5:180607967:180608159:-	0	-
#Deleted in new
chr5	180684765	180684906	ENSG00000248717.1|LINC02222|lncRNA|chr5:180684765:180684906:+	0	+
#Deleted in new
chr5	180685648	180686546	ENSG00000248717.1|LINC02222|lncRNA|chr5:180685648:180686546:+	0	+
#Deleted in new
chr5	180815413	180815541	ENSG00000131446.16|MGAT1|pc|chr5:180815413:180815541:-	0	-
#Deleted in new
chr5	180815413	180815580	ENSG00000131446.16|MGAT1|pc|chr5:180815413:180815580:-	0	-
#Partially deleted in new
chr5	180815413	180815652	ENSG00000131446.16|MGAT1|pc|chr5:180815413:180815652:-	0	-
#Deleted in new
chr5	180815424	180815567	ENSG00000131446.16|MGAT1|pc|chr5:180815424:180815567:-	0	-
#Deleted in new
chr5	180829953	180831605	ENSG00000278970.1|HEIH|lncRNA|chr5:180829953:180831605:-	0	-
#Deleted in new
chr5	180830956	180831229	ENSG00000245060.6|LINC00847|lncRNA|chr5:180830956:180831229:+	0	+
#Deleted in new
chr5	180831023	180831229	ENSG00000245060.6|LINC00847|lncRNA|chr5:180831023:180831229:+	0	+
#Deleted in new
chr5	180831026	180831229	ENSG00000245060.6|LINC00847|lncRNA|chr5:180831026:180831229:+	0	+
#Deleted in new
chr5	180831038	180831229	ENSG00000245060.6|LINC00847|lncRNA|chr5:180831038:180831229:+	0	+
#Deleted in new
chr5	180831364	180831806	ENSG00000245060.6|LINC00847|lncRNA|chr5:180831364:180831806:+	0	+
#Deleted in new
chr5	180831735	180831806	ENSG00000245060.6|LINC00847|lncRNA|chr5:180831735:180831806:+	0	+
#Deleted in new
chr5	180831758	180831941	ENSG00000245060.6|LINC00847|lncRNA|chr5:180831758:180831941:+	0	+
#Deleted in new
chr5	180832672	180832860	ENSG00000245060.6|LINC00847|lncRNA|chr5:180832672:180832860:+	0	+
#Deleted in new
chr5	180834311	180834779	ENSG00000245060.6|LINC00847|lncRNA|chr5:180834311:180834779:+	0	+
#Deleted in new
chr5	180834311	180834871	ENSG00000245060.6|LINC00847|lncRNA|chr5:180834311:180834871:+	0	+
#Deleted in new
chr5	180834311	180835678	ENSG00000245060.6|LINC00847|lncRNA|chr5:180834311:180835678:+	0	+
#Deleted in new
chr5	180834311	180835726	ENSG00000245060.6|LINC00847|lncRNA|chr5:180834311:180835726:+	0	+
#Deleted in new
chr5	180899076	180899359	ENSG00000113303.11|BTNL8|pc|chr5:180899076:180899359:+	0	+
#Deleted in new
chr5	180899104	180899359	ENSG00000113303.11|BTNL8|pc|chr5:180899104:180899359:+	0	+
#Deleted in new
chr5	180899121	180899359	ENSG00000113303.11|BTNL8|pc|chr5:180899121:180899359:+	0	+
#Deleted in new
chr5	180899273	180899359	ENSG00000113303.11|BTNL8|pc|chr5:180899273:180899359:+	0	+
#Deleted in new
chr5	180902345	180902396	ENSG00000113303.11|BTNL8|pc|chr5:180902345:180902396:+	0	+
#Deleted in new
chr5	180902374	180902396	ENSG00000113303.11|BTNL8|pc|chr5:180902374:180902396:+	0	+
#Deleted in new
chr5	180909563	180909697	ENSG00000113303.11|BTNL8|pc|chr5:180909563:180909697:+	0	+
#Deleted in new
chr5	180909572	180909697	ENSG00000113303.11|BTNL8|pc|chr5:180909572:180909697:+	0	+
#Deleted in new
chr5	180909578	180909697	ENSG00000113303.11|BTNL8|pc|chr5:180909578:180909697:+	0	+
#Deleted in new
chr5	180947511	180947625	ENSG00000113303.11|BTNL8|pc|chr5:180947511:180947625:+	0	+
#Deleted in new
chr5	180947511	180947755	ENSG00000113303.11|BTNL8|pc|chr5:180947511:180947755:+	0	+
#Deleted in new
chr5	180947511	180948353	ENSG00000113303.11|BTNL8|pc|chr5:180947511:180948353:+	0	+
#Deleted in new
chr5	180947624	180947755	ENSG00000113303.11|BTNL8|pc|chr5:180947624:180947755:+	0	+
#Deleted in new
chr5	180948354	180948375	ENSG00000113303.11|BTNL8|pc|chr5:180948354:180948375:+	0	+
#Deleted in new
chr5	180948354	180948921	ENSG00000113303.11|BTNL8|pc|chr5:180948354:180948921:+	0	+
#Deleted in new
chr5	180948919	180948946	ENSG00000113303.11|BTNL8|pc|chr5:180948919:180948946:+	0	+
#Deleted in new
chr5	180949238	180949265	ENSG00000113303.11|BTNL8|pc|chr5:180949238:180949265:+	0	+
#Deleted in new
chr5	180949238	180949633	ENSG00000113303.11|BTNL8|pc|chr5:180949238:180949633:+	0	+
#Deleted in new
chr5	180988844	180989077	ENSG00000168903.8|BTNL3|pc|chr5:180988844:180989077:+	0	+
#Deleted in new
chr5	180992812	180993160	ENSG00000168903.8|BTNL3|pc|chr5:180992812:180993160:+	0	+
#Deleted in new
chr5	181002671	181002785	ENSG00000168903.8|BTNL3|pc|chr5:181002671:181002785:+	0	+
#Deleted in new
chr5	181003855	181003876	ENSG00000168903.8|BTNL3|pc|chr5:181003855:181003876:+	0	+
#Deleted in new
chr5	181004416	181004443	ENSG00000168903.8|BTNL3|pc|chr5:181004416:181004443:+	0	+
#Deleted in new
chr5	181004735	181004762	ENSG00000168903.8|BTNL3|pc|chr5:181004735:181004762:+	0	+
#Partially deleted in new
chr5	181005333	181006727	ENSG00000168903.8|BTNL3|pc|chr5:181005333:181006727:+	0	+
#Deleted in new
chr5	181052784	181052833	ENSG00000165810.16|BTNL9|pc|chr5:181052784:181052833:+	0	+
#Partially deleted in new
chr5	181053468	181053811	ENSG00000165810.16|BTNL9|pc|chr5:181053468:181053811:+	0	+
#Partially deleted in new
chr5	181053468	181053873	ENSG00000165810.16|BTNL9|pc|chr5:181053468:181053873:+	0	+
#Partially deleted in new
chr5	181053468	181054001	ENSG00000165810.16|BTNL9|pc|chr5:181053468:181054001:+	0	+
#Partially deleted in new
chr5	181053468	181054259	ENSG00000165810.16|BTNL9|pc|chr5:181053468:181054259:+	0	+
#Partially deleted in new
chr5	181053601	181054140	ENSG00000165810.16|BTNL9|pc|chr5:181053601:181054140:+	0	+
#Partially deleted in new
chr5	181055432	181055768	ENSG00000165810.16|BTNL9|pc|chr5:181055432:181055768:+	0	+
#Deleted in new
chr5	181129519	181129575	ENSG00000185372.3|OR2V1|pc|chr5:181129519:181129575:-	0	-
#Deleted in new
chr5	181193341	181193467	ENSG00000250222.1|AC008443.5|lncRNA|chr5:181193341:181193467:+	0	+
#Partially deleted in new
chr5	181199367	181199591	ENSG00000250900.6|AC008443.6|lncRNA|chr5:181199367:181199591:+	0	+
#Partially deleted in new
chr5	181199372	181199591	ENSG00000250900.6|AC008443.6|lncRNA|chr5:181199372:181199591:+	0	+
#Deleted in new
chr5	181200912	181201016	ENSG00000250900.6|AC008443.6|lncRNA|chr5:181200912:181201016:+	0	+
#Deleted in new
chr5	181202199	181202305	ENSG00000250900.6|AC008443.6|lncRNA|chr5:181202199:181202305:+	0	+
#Partially deleted in new
chr5	181202587	181203100	ENSG00000250900.6|AC008443.6|lncRNA|chr5:181202587:181203100:+	0	+
#Partially deleted in new
chr5	181202587	181203101	ENSG00000250900.6|AC008443.6|lncRNA|chr5:181202587:181203101:+	0	+
#Partially deleted in new
chr5	181202587	181203103	ENSG00000250900.6|AC008443.6|lncRNA|chr5:181202587:181203103:+	0	+
#Deleted in new
chr5	181222498	181222781	ENSG00000146063.19|TRIM41|pc|chr5:181222498:181222781:+	0	+
#Deleted in new
chr5	181237224	181237319	ENSG00000204628.11|RACK1|pc|chr5:181237224:181237319:-	0	-
#Partially deleted in new
chr5	181238098	181238663	ENSG00000204628.11|RACK1|pc|chr5:181238098:181238663:-	0	-
#Partially deleted in new
chr5	181238205	181239177	ENSG00000204628.11|RACK1|pc|chr5:181238205:181239177:-	0	-
#Deleted in new
chr5	181240215	181240327	ENSG00000204628.11|RACK1|pc|chr5:181240215:181240327:-	0	-
#Deleted in new
chr5	181240215	181240345	ENSG00000204628.11|RACK1|pc|chr5:181240215:181240345:-	0	-
#Deleted in new
chr5	181240215	181240473	ENSG00000204628.11|RACK1|pc|chr5:181240215:181240473:-	0	-
#Deleted in new
chr5	181240312	181240345	ENSG00000204628.11|RACK1|pc|chr5:181240312:181240345:-	0	-
#Deleted in new
chr5	181240956	181241418	ENSG00000204628.11|RACK1|pc|chr5:181240956:181241418:-	0	-
#Partially deleted in new
chr5	181242553	181243370	ENSG00000204628.11|RACK1|pc|chr5:181242553:181243370:-	0	-
#Deleted in new
chr5	181246522	181246882	ENSG00000233937.6|AC008443.1|lncRNA|chr5:181246522:181246882:+	0	+
#Deleted in new
chr5	181246524	181246882	ENSG00000233937.6|AC008443.1|lncRNA|chr5:181246524:181246882:+	0	+
#Deleted in new
chr5	181246900	181247386	ENSG00000233937.6|AC008443.1|lncRNA|chr5:181246900:181247386:+	0	+
#Deleted in new
chr5	181247115	181247386	ENSG00000233937.6|AC008443.1|lncRNA|chr5:181247115:181247386:+	0	+
#Deleted in new
chr5	181247123	181247576	ENSG00000204628.11|RACK1|pc|chr5:181247123:181247576:-	0	-
#Deleted in new
chr5	181247700	181247929	ENSG00000233937.6|AC008443.1|lncRNA|chr5:181247700:181247929:+	0	+
#Deleted in new
chr5	181248008	181248096	ENSG00000204628.11|RACK1|pc|chr5:181248008:181248096:-	0	-
#Split in new
chr5	181256386	181261139	ENSG00000183718.5|TRIM52|pc|chr5:181256386:181261139:-	0	-
#Deleted in new
chr5	181257008	181257054	ENSG00000183718.5|TRIM52|pc|chr5:181257008:181257054:-	0	-
#Deleted in new
chr5	181257186	181257244	ENSG00000233937.6|AC008443.1|lncRNA|chr5:181257186:181257244:+	0	+
#Deleted in new
chr5	181257186	181257586	ENSG00000233937.6|AC008443.1|lncRNA|chr5:181257186:181257586:+	0	+
#Deleted in new
chr5	181259260	181259906	ENSG00000183718.5|TRIM52|pc|chr5:181259260:181259906:-	0	-
#Duplicated in new
chr5	181261211	181261384	ENSG00000248275.1|TRIM52-AS1|lncRNA|chr5:181261211:181261384:+	0	+
#Deleted in new
chr5	181263627	181263789	ENSG00000248275.1|TRIM52-AS1|lncRNA|chr5:181263627:181263789:+	0	+
#Deleted in new
chr5	181263627	181264261	ENSG00000248275.1|TRIM52-AS1|lncRNA|chr5:181263627:181264261:+	0	+
#Deleted in new
chr5	181263633	181263766	ENSG00000248275.1|TRIM52-AS1|lncRNA|chr5:181263633:181263766:+	0	+
#Deleted in new
chr5	181264051	181264229	ENSG00000248275.1|TRIM52-AS1|lncRNA|chr5:181264051:181264229:+	0	+
#Deleted in new
chr5	181264051	181264257	ENSG00000248275.1|TRIM52-AS1|lncRNA|chr5:181264051:181264257:+	0	+
#Deleted in new
chr5	181271572	181271689	ENSG00000233937.6|AC008443.1|lncRNA|chr5:181271572:181271689:+	0	+
#Deleted in new
chr5	181271572	181271689	ENSG00000248275.1|TRIM52-AS1|lncRNA|chr5:181271572:181271689:+	0	+
#Deleted in new
chr5	181281374	181281612	ENSG00000248103.1|AC008443.3|lncRNA|chr5:181281374:181281612:+	0	+
#Deleted in new
chr5	181283341	181283652	ENSG00000248103.1|AC008443.3|lncRNA|chr5:181283341:181283652:+	0	+
#Deleted in new
chr5	181306501	181306652	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181306501:181306652:+	0	+
#Deleted in new
chr5	181313828	181313952	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181313828:181313952:+	0	+
#Deleted in new
chr5	181315836	181315953	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181315836:181315953:+	0	+
#Deleted in new
chr5	181316289	181316497	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181316289:181316497:+	0	+
#Deleted in new
chr5	181316324	181316486	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181316324:181316486:+	0	+
#Deleted in new
chr5	181316367	181316486	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181316367:181316486:+	0	+
#Deleted in new
chr5	181317330	181317395	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181317330:181317395:+	0	+
#Deleted in new
chr5	181320494	181320552	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181320494:181320552:+	0	+
#Deleted in new
chr5	181320645	181320878	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181320645:181320878:+	0	+
#Deleted in new
chr5	181321651	181321816	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181321651:181321816:+	0	+
#Deleted in new
chr5	181321651	181321842	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181321651:181321842:+	0	+
#Deleted in new
chr5	181323901	181323959	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181323901:181323959:+	0	+
#Deleted in new
chr5	181324052	181324130	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181324052:181324130:+	0	+
#Deleted in new
chr5	181324052	181324685	ENSG00000238035.8|AC138035.1|lncRNA|chr5:181324052:181324685:+	0	+
#Partially deleted in new
chr5	1815850	1816605	ENSG00000145494.11|NDUFS6|pc|chr5:1815850:1816605:+	0	+
#Partially deleted in new
chr5	182003	182589	ENSG00000153404.14|PLEKHG4B|pc|chr5:182003:182589:+	0	+
#Partially deleted in new
chr5	182003	189970	ENSG00000153404.14|PLEKHG4B|pc|chr5:182003:189970:+	0	+
#Partially deleted in new
chr5	182003	189972	ENSG00000153404.14|PLEKHG4B|pc|chr5:182003:189972:+	0	+
#Deleted in new
chr5	1856402	1856568	ENSG00000250417.1|LINC02116|lncRNA|chr5:1856402:1856568:-	0	-
#Deleted in new
chr5	1858408	1859890	ENSG00000279222.1|AC025183.3|lncRNA|chr5:1858408:1859890:-	0	-
#Deleted in new
chr5	18745997	18746173	ENSG00000248693.1|LINC02100|lncRNA|chr5:18745997:18746173:-	0	-
#Partially deleted in new
chr5	18965860	18966231	ENSG00000249174.1|AC106744.1|lncRNA|chr5:18965860:18966231:-	0	-
#Deleted in new
chr5	1898044	1898119	ENSG00000249326.1|CTD-2194D22.4|lncRNA|chr5:1898044:1898119:+	0	+
#Partially deleted in new
chr5	1899041	1900493	ENSG00000249326.1|CTD-2194D22.4|lncRNA|chr5:1899041:1900493:+	0	+
#Deleted in new
chr5	19035196	19036033	ENSG00000251487.1|AC106744.2|lncRNA|chr5:19035196:19036033:-	0	-
#Deleted in new
chr5	19035905	19036033	ENSG00000251487.1|AC106744.2|lncRNA|chr5:19035905:19036033:-	0	-
#Deleted in new
chr5	19038679	19038740	ENSG00000251487.1|AC106744.2|lncRNA|chr5:19038679:19038740:-	0	-
#Deleted in new
chr5	19038679	19038799	ENSG00000251487.1|AC106744.2|lncRNA|chr5:19038679:19038799:-	0	-
#Deleted in new
chr5	19142057	19142346	ENSG00000249174.1|AC106744.1|lncRNA|chr5:19142057:19142346:-	0	-
#Deleted in new
chr5	1933862	1933985	ENSG00000248994.1|AC126768.2|lncRNA|chr5:1933862:1933985:+	0	+
#Deleted in new
chr5	1939771	1939941	ENSG00000248994.1|AC126768.2|lncRNA|chr5:1939771:1939941:+	0	+
#Partially deleted in new
chr5	195777	196341	ENSG00000261434.1|AC021087.4|lncRNA|chr5:195777:196341:+	0	+
#Deleted in new
chr5	1958581	1958901	ENSG00000248994.1|AC126768.2|lncRNA|chr5:1958581:1958901:+	0	+
#Deleted in new
chr5	1958581	1959176	ENSG00000248994.1|AC126768.2|lncRNA|chr5:1958581:1959176:+	0	+
#Partially deleted in new
chr5	1963608	1963856	ENSG00000248597.1|AC126768.1|lncRNA|chr5:1963608:1963856:-	0	-
#Partially deleted in new
chr5	1966799	1966963	ENSG00000248597.1|AC126768.1|lncRNA|chr5:1966799:1966963:-	0	-
#Deleted in new
chr5	1967076	1967154	ENSG00000248597.1|AC126768.1|lncRNA|chr5:1967076:1967154:-	0	-
#Deleted in new
chr5	1968093	1968229	ENSG00000249731.1|AC126768.3|lncRNA|chr5:1968093:1968229:+	0	+
#Deleted in new
chr5	1968589	1969013	ENSG00000249731.1|AC126768.3|lncRNA|chr5:1968589:1969013:+	0	+
#Split in new
chr5	196870	205958	ENSG00000164366.3|CCDC127|pc|chr5:196870:205958:-	0	-
#Deleted in new
chr5	19803821	19804028	ENSG00000145526.11|CDH18|pc|chr5:19803821:19804028:-	0	-
#Deleted in new
chr5	19848050	19848211	ENSG00000145526.11|CDH18|pc|chr5:19848050:19848211:-	0	-
#Deleted in new
chr5	19877993	19878090	ENSG00000145526.11|CDH18|pc|chr5:19877993:19878090:-	0	-
#Deleted in new
chr5	19878031	19878090	ENSG00000145526.11|CDH18|pc|chr5:19878031:19878090:-	0	-
#Deleted in new
chr5	19886113	19886272	ENSG00000145526.11|CDH18|pc|chr5:19886113:19886272:-	0	-
#Deleted in new
chr5	19991872	19992014	ENSG00000145526.11|CDH18|pc|chr5:19991872:19992014:-	0	-
#Deleted in new
chr5	20331355	20331456	ENSG00000249854.1|CDH18-AS1|lncRNA|chr5:20331355:20331456:+	0	+
#Deleted in new
chr5	20611839	20611985	ENSG00000251629.6|LINC02241|lncRNA|chr5:20611839:20611985:+	0	+
#Deleted in new
chr5	20611849	20611985	ENSG00000251629.6|LINC02241|lncRNA|chr5:20611849:20611985:+	0	+
#Partially deleted in new
chr5	20612624	20613044	ENSG00000249490.1|LINC02146|lncRNA|chr5:20612624:20613044:-	0	-
#Deleted in new
chr5	20614676	20614765	ENSG00000249490.1|LINC02146|lncRNA|chr5:20614676:20614765:-	0	-
#Deleted in new
chr5	20616404	20616480	ENSG00000251629.6|LINC02241|lncRNA|chr5:20616404:20616480:+	0	+
#Deleted in new
chr5	20660711	20660768	ENSG00000251629.6|LINC02241|lncRNA|chr5:20660711:20660768:+	0	+
#Deleted in new
chr5	20670566	20670611	ENSG00000251629.6|LINC02241|lncRNA|chr5:20670566:20670611:+	0	+
#Deleted in new
chr5	20736954	20737101	ENSG00000251629.6|LINC02241|lncRNA|chr5:20736954:20737101:+	0	+
#Deleted in new
chr5	20807852	20807913	ENSG00000251629.6|LINC02241|lncRNA|chr5:20807852:20807913:+	0	+
#Deleted in new
chr5	20814328	20814398	ENSG00000251629.6|LINC02241|lncRNA|chr5:20814328:20814398:+	0	+
#Deleted in new
chr5	20879365	20879458	ENSG00000251629.6|LINC02241|lncRNA|chr5:20879365:20879458:+	0	+
#Deleted in new
chr5	20895482	20895567	ENSG00000251629.6|LINC02241|lncRNA|chr5:20895482:20895567:+	0	+
#Deleted in new
chr5	20932882	20932980	ENSG00000251629.6|LINC02241|lncRNA|chr5:20932882:20932980:+	0	+
#Deleted in new
chr5	20934931	20935036	ENSG00000251629.6|LINC02241|lncRNA|chr5:20934931:20935036:+	0	+
#Deleted in new
chr5	20934931	20935039	ENSG00000251629.6|LINC02241|lncRNA|chr5:20934931:20935039:+	0	+
#Deleted in new
chr5	20936150	20936712	ENSG00000251629.6|LINC02241|lncRNA|chr5:20936150:20936712:+	0	+
#Partially deleted in new
chr5	20937178	20937257	ENSG00000251629.6|LINC02241|lncRNA|chr5:20937178:20937257:+	0	+
#Partially deleted in new
chr5	21323872	21329070	ENSG00000249359.2|AC093274.1|lncRNA|chr5:21323872:21329070:-	0	-
#Deleted in new
chr5	21329565	21329630	ENSG00000249359.2|AC093274.1|lncRNA|chr5:21329565:21329630:-	0	-
#Deleted in new
chr5	21341184	21341375	ENSG00000249359.2|AC093274.1|lncRNA|chr5:21341184:21341375:-	0	-
#Partially deleted in new
chr5	213897	216692	ENSG00000260774.1|AC021087.3|lncRNA|chr5:213897:216692:-	0	-
#Deleted in new
chr5	21493435	21494596	ENSG00000279107.1|AC138951.2|lncRNA|chr5:21493435:21494596:+	0	+
#Deleted in new
chr5	21569754	21570045	ENSG00000272130.1|AC091946.2|lncRNA|chr5:21569754:21570045:+	0	+
#Deleted in new
chr5	21616261	21616597	ENSG00000253766.1|AC091946.1|lncRNA|chr5:21616261:21616597:+	0	+
#Deleted in new
chr5	21623970	21624110	ENSG00000253766.1|AC091946.1|lncRNA|chr5:21623970:21624110:+	0	+
#Deleted in new
chr5	21774398	21774509	ENSG00000253766.1|AC091946.1|lncRNA|chr5:21774398:21774509:+	0	+
#Deleted in new
chr5	21779257	21779522	ENSG00000253766.1|AC091946.1|lncRNA|chr5:21779257:21779522:+	0	+
#Deleted in new
chr5	22405256	22405351	ENSG00000154162.14|CDH12|pc|chr5:22405256:22405351:-	0	-
#Deleted in new
chr5	22638697	22638994	ENSG00000154162.14|CDH12|pc|chr5:22638697:22638994:-	0	-
#Deleted in new
chr5	23443585	23443624	ENSG00000164256.10|PRDM9|pc|chr5:23443585:23443624:+	0	+
#Deleted in new
chr5	23462671	23462807	ENSG00000164256.10|PRDM9|pc|chr5:23462671:23462807:+	0	+
#Deleted in new
chr5	23493470	23493615	ENSG00000164256.10|PRDM9|pc|chr5:23493470:23493615:+	0	+
#Deleted in new
chr5	23507154	23507327	ENSG00000164256.10|PRDM9|pc|chr5:23507154:23507327:+	0	+
#Deleted in new
chr5	23951347	23951803	ENSG00000248874.5|C5orf17|lncRNA|chr5:23951347:23951803:+	0	+
#Deleted in new
chr5	23951563	23951803	ENSG00000248874.5|C5orf17|lncRNA|chr5:23951563:23951803:+	0	+
#Deleted in new
chr5	23975996	23976050	ENSG00000248874.5|C5orf17|lncRNA|chr5:23975996:23976050:+	0	+
#Deleted in new
chr5	23977780	23977922	ENSG00000248874.5|C5orf17|lncRNA|chr5:23977780:23977922:+	0	+
#Deleted in new
chr5	23977789	23977922	ENSG00000248874.5|C5orf17|lncRNA|chr5:23977789:23977922:+	0	+
#Deleted in new
chr5	23979936	23979986	ENSG00000248874.5|C5orf17|lncRNA|chr5:23979936:23979986:+	0	+
#Split in new
chr5	23979936	23980841	ENSG00000248874.5|C5orf17|lncRNA|chr5:23979936:23980841:+	0	+
#Deleted in new
chr5	24177836	24178263	ENSG00000248874.5|C5orf17|lncRNA|chr5:24177836:24178263:+	0	+
#Deleted in new
chr5	24352308	24352762	ENSG00000250694.1|AC010387.1|lncRNA|chr5:24352308:24352762:-	0	-
#Deleted in new
chr5	24353410	24353443	ENSG00000250694.1|AC010387.1|lncRNA|chr5:24353410:24353443:-	0	-
#Deleted in new
chr5	24499337	24499521	ENSG00000040731.10|CDH10|pc|chr5:24499337:24499521:-	0	-
#Deleted in new
chr5	24554017	24554187	ENSG00000251294.1|AC091885.2|lncRNA|chr5:24554017:24554187:+	0	+
#Partially deleted in new
chr5	24611819	24613222	ENSG00000251294.1|AC091885.2|lncRNA|chr5:24611819:24613222:+	0	+
#Deleted in new
chr5	24835279	24837151	ENSG00000248908.1|LINC02239|lncRNA|chr5:24835279:24837151:-	0	-
#Deleted in new
chr5	24885249	24885461	ENSG00000250524.1|AC106821.1|lncRNA|chr5:24885249:24885461:-	0	-
#Partially deleted in new
chr5	249053	250776	ENSG00000073578.16|SDHA|pc|chr5:249053:250776:+	0	+
#Partially deleted in new
chr5	25087449	25088231	ENSG00000251273.2|LINC02228|lncRNA|chr5:25087449:25088231:-	0	-
#Partially deleted in new
chr5	25093112	25093267	ENSG00000251273.2|LINC02228|lncRNA|chr5:25093112:25093267:-	0	-
#Deleted in new
chr5	25101017	25103121	ENSG00000251273.2|LINC02228|lncRNA|chr5:25101017:25103121:-	0	-
#Deleted in new
chr5	25126304	25126454	ENSG00000251273.2|LINC02228|lncRNA|chr5:25126304:25126454:-	0	-
#Deleted in new
chr5	25162229	25162269	ENSG00000251273.2|LINC02228|lncRNA|chr5:25162229:25162269:-	0	-
#Deleted in new
chr5	25167161	25167191	ENSG00000251273.2|LINC02228|lncRNA|chr5:25167161:25167191:-	0	-
#Deleted in new
chr5	25193042	25193543	ENSG00000245662.3|LINC02211|lncRNA|chr5:25193042:25193543:+	0	+
#Deleted in new
chr5	25218972	25219049	ENSG00000251654.2|AC099499.1|lncRNA|chr5:25218972:25219049:-	0	-
#Deleted in new
chr5	25257283	25257363	ENSG00000245662.3|LINC02211|lncRNA|chr5:25257283:25257363:+	0	+
#Deleted in new
chr5	25258864	25258989	ENSG00000245662.3|LINC02211|lncRNA|chr5:25258864:25258989:+	0	+
#Deleted in new
chr5	25260572	25260690	ENSG00000245662.3|LINC02211|lncRNA|chr5:25260572:25260690:+	0	+
#Deleted in new
chr5	25284709	25284832	ENSG00000251654.2|AC099499.1|lncRNA|chr5:25284709:25284832:-	0	-
#Deleted in new
chr5	25298527	25298612	ENSG00000251654.2|AC099499.1|lncRNA|chr5:25298527:25298612:-	0	-
#Deleted in new
chr5	25298978	25299060	ENSG00000245662.3|LINC02211|lncRNA|chr5:25298978:25299060:+	0	+
#Deleted in new
chr5	25302217	25302345	ENSG00000245662.3|LINC02211|lncRNA|chr5:25302217:25302345:+	0	+
#Deleted in new
chr5	25305898	25306021	ENSG00000245662.3|LINC02211|lncRNA|chr5:25305898:25306021:+	0	+
#Deleted in new
chr5	25305898	25306172	ENSG00000245662.3|LINC02211|lncRNA|chr5:25305898:25306172:+	0	+
#Deleted in new
chr5	25310934	25311370	ENSG00000245662.3|LINC02211|lncRNA|chr5:25310934:25311370:+	0	+
#Deleted in new
chr5	25413438	25413844	ENSG00000248605.5|AC022140.1|lncRNA|chr5:25413438:25413844:-	0	-
#Deleted in new
chr5	25413766	25413844	ENSG00000248605.5|AC022140.1|lncRNA|chr5:25413766:25413844:-	0	-
#Deleted in new
chr5	25422729	25422855	ENSG00000248605.5|AC022140.1|lncRNA|chr5:25422729:25422855:-	0	-
#Deleted in new
chr5	25425411	25425599	ENSG00000279531.1|AC022140.2|lncRNA|chr5:25425411:25425599:-	0	-
#Deleted in new
chr5	25445819	25445907	ENSG00000248605.5|AC022140.1|lncRNA|chr5:25445819:25445907:-	0	-
#Deleted in new
chr5	25445819	25445925	ENSG00000248605.5|AC022140.1|lncRNA|chr5:25445819:25445925:-	0	-
#Deleted in new
chr5	25716270	25716715	ENSG00000279869.1|AC022418.1|lncRNA|chr5:25716270:25716715:+	0	+
#Deleted in new
chr5	26382518	26382618	ENSG00000249099.1|AC025475.1|lncRNA|chr5:26382518:26382618:-	0	-
#Deleted in new
chr5	26399676	26399819	ENSG00000249099.1|AC025475.1|lncRNA|chr5:26399676:26399819:-	0	-
#Deleted in new
chr5	26711550	26712026	ENSG00000251033.1|AC113347.4|lncRNA|chr5:26711550:26712026:-	0	-
#Deleted in new
chr5	26734359	26734443	ENSG00000251033.1|AC113347.4|lncRNA|chr5:26734359:26734443:-	0	-
#Deleted in new
chr5	269857	270207	ENSG00000248925.1|AC021087.1|lncRNA|chr5:269857:270207:-	0	-
#Deleted in new
chr5	27028253	27028370	ENSG00000113100.9|CDH9|pc|chr5:27028253:27028370:-	0	-
#Deleted in new
chr5	27121041	27121150	ENSG00000113100.9|CDH9|pc|chr5:27121041:27121150:-	0	-
#Partially deleted in new
chr5	2712590	2715237	ENSG00000281560.1|LSINCT5|lncRNA|chr5:2712590:2715237:+	0	+
#Deleted in new
chr5	271344	271516	ENSG00000248925.1|AC021087.1|lncRNA|chr5:271344:271516:-	0	-
#Deleted in new
chr5	2736661	2737321	ENSG00000259757.1|AC091891.1|lncRNA|chr5:2736661:2737321:-	0	-
#Deleted in new
chr5	27412612	27412689	ENSG00000248490.1|AC113355.1|lncRNA|chr5:27412612:27412689:-	0	-
#Deleted in new
chr5	27423500	27423601	ENSG00000248490.1|AC113355.1|lncRNA|chr5:27423500:27423601:-	0	-
#Deleted in new
chr5	27436152	27436411	ENSG00000248490.1|AC113355.1|lncRNA|chr5:27436152:27436411:-	0	-
#Deleted in new
chr5	27472291	27472519	ENSG00000250337.5|LINC01021|lncRNA|chr5:27472291:27472519:+	0	+
#Deleted in new
chr5	27472306	27472519	ENSG00000250337.5|LINC01021|lncRNA|chr5:27472306:27472519:+	0	+
#Deleted in new
chr5	27475534	27475695	ENSG00000250337.5|LINC01021|lncRNA|chr5:27475534:27475695:+	0	+
#Deleted in new
chr5	27475664	27475695	ENSG00000250337.5|LINC01021|lncRNA|chr5:27475664:27475695:+	0	+
#Deleted in new
chr5	27476068	27476158	ENSG00000250337.5|LINC01021|lncRNA|chr5:27476068:27476158:+	0	+
#Deleted in new
chr5	27477638	27477801	ENSG00000250337.5|LINC01021|lncRNA|chr5:27477638:27477801:+	0	+
#Deleted in new
chr5	27484925	27485029	ENSG00000250337.5|LINC01021|lncRNA|chr5:27484925:27485029:+	0	+
#Deleted in new
chr5	27484925	27485186	ENSG00000250337.5|LINC01021|lncRNA|chr5:27484925:27485186:+	0	+
#Deleted in new
chr5	27484925	27486146	ENSG00000250337.5|LINC01021|lncRNA|chr5:27484925:27486146:+	0	+
#Deleted in new
chr5	27489281	27489386	ENSG00000250337.5|LINC01021|lncRNA|chr5:27489281:27489386:+	0	+
#Partially deleted in new
chr5	27495948	27496401	ENSG00000250337.5|LINC01021|lncRNA|chr5:27495948:27496401:+	0	+
#Partially deleted in new
chr5	276011	276940	ENSG00000249915.7|PDCD6|pc|chr5:276011:276940:+	0	+
#Deleted in new
chr5	28286388	28286886	ENSG00000249785.1|LINC02103|lncRNA|chr5:28286388:28286886:-	0	-
#Deleted in new
chr5	28287640	28287665	ENSG00000249785.1|LINC02103|lncRNA|chr5:28287640:28287665:-	0	-
#Deleted in new
chr5	2831020	2831059	ENSG00000248137.1|AC094105.1|lncRNA|chr5:2831020:2831059:-	0	-
#Deleted in new
chr5	2834618	2835139	ENSG00000248137.1|AC094105.1|lncRNA|chr5:2834618:2835139:-	0	-
#Deleted in new
chr5	28782677	28782835	ENSG00000250453.1|AC008825.1|lncRNA|chr5:28782677:28782835:-	0	-
#Duplicated in new
chr5	28808955	28809249	ENSG00000250453.1|AC008825.1|lncRNA|chr5:28808955:28809249:-	0	-
#Deleted in new
chr5	29143502	29143729	ENSG00000259786.6|LINC02109|lncRNA|chr5:29143502:29143729:+	0	+
#Deleted in new
chr5	29143511	29143729	ENSG00000259786.6|LINC02109|lncRNA|chr5:29143511:29143729:+	0	+
#Deleted in new
chr5	29145747	29145874	ENSG00000259786.6|LINC02109|lncRNA|chr5:29145747:29145874:+	0	+
#Deleted in new
chr5	29146270	29146461	ENSG00000259786.6|LINC02109|lncRNA|chr5:29146270:29146461:+	0	+
#Deleted in new
chr5	29153458	29153485	ENSG00000259786.6|LINC02109|lncRNA|chr5:29153458:29153485:+	0	+
#Deleted in new
chr5	29153458	29153620	ENSG00000259786.6|LINC02109|lncRNA|chr5:29153458:29153620:+	0	+
#Deleted in new
chr5	29153535	29153733	ENSG00000259786.6|LINC02109|lncRNA|chr5:29153535:29153733:+	0	+
#Deleted in new
chr5	29162415	29162458	ENSG00000259786.6|LINC02109|lncRNA|chr5:29162415:29162458:+	0	+
#Deleted in new
chr5	29162415	29162590	ENSG00000259786.6|LINC02109|lncRNA|chr5:29162415:29162590:+	0	+
#Deleted in new
chr5	29164416	29164514	ENSG00000259786.6|LINC02109|lncRNA|chr5:29164416:29164514:+	0	+
#Deleted in new
chr5	29164424	29164514	ENSG00000259786.6|LINC02109|lncRNA|chr5:29164424:29164514:+	0	+
#Deleted in new
chr5	29164929	29164984	ENSG00000259786.6|LINC02109|lncRNA|chr5:29164929:29164984:+	0	+
#Deleted in new
chr5	29164929	29165046	ENSG00000259786.6|LINC02109|lncRNA|chr5:29164929:29165046:+	0	+
#Deleted in new
chr5	29167607	29167797	ENSG00000259786.6|LINC02109|lncRNA|chr5:29167607:29167797:+	0	+
#Deleted in new
chr5	29169559	29169586	ENSG00000259786.6|LINC02109|lncRNA|chr5:29169559:29169586:+	0	+
#Deleted in new
chr5	29172042	29172358	ENSG00000259786.6|LINC02109|lncRNA|chr5:29172042:29172358:+	0	+
#Deleted in new
chr5	29176891	29177014	ENSG00000259786.6|LINC02109|lncRNA|chr5:29176891:29177014:+	0	+
#Deleted in new
chr5	29179324	29179425	ENSG00000259786.6|LINC02109|lncRNA|chr5:29179324:29179425:+	0	+
#Deleted in new
chr5	29180048	29180274	ENSG00000259786.6|LINC02109|lncRNA|chr5:29180048:29180274:+	0	+
#Deleted in new
chr5	29183304	29183335	ENSG00000259786.6|LINC02109|lncRNA|chr5:29183304:29183335:+	0	+
#Deleted in new
chr5	29191698	29191855	ENSG00000259786.6|LINC02109|lncRNA|chr5:29191698:29191855:+	0	+
#Deleted in new
chr5	29193049	29193115	ENSG00000259786.6|LINC02109|lncRNA|chr5:29193049:29193115:+	0	+
#Deleted in new
chr5	29208859	29208939	ENSG00000259786.6|LINC02109|lncRNA|chr5:29208859:29208939:+	0	+
#Deleted in new
chr5	29211311	29211413	ENSG00000259786.6|LINC02109|lncRNA|chr5:29211311:29211413:+	0	+
#Deleted in new
chr5	29216468	29216534	ENSG00000259786.6|LINC02109|lncRNA|chr5:29216468:29216534:+	0	+
#Deleted in new
chr5	29216468	29216611	ENSG00000259786.6|LINC02109|lncRNA|chr5:29216468:29216611:+	0	+
#Deleted in new
chr5	29380295	29380325	ENSG00000248391.5|LINC02064|lncRNA|chr5:29380295:29380325:-	0	-
#Deleted in new
chr5	29381852	29381962	ENSG00000248391.5|LINC02064|lncRNA|chr5:29381852:29381962:-	0	-
#Deleted in new
chr5	29383103	29383303	ENSG00000248391.5|LINC02064|lncRNA|chr5:29383103:29383303:-	0	-
#Deleted in new
chr5	29384319	29384392	ENSG00000248391.5|LINC02064|lncRNA|chr5:29384319:29384392:-	0	-
#Deleted in new
chr5	29389810	29389939	ENSG00000248391.5|LINC02064|lncRNA|chr5:29389810:29389939:-	0	-
#Deleted in new
chr5	29389810	29389940	ENSG00000248391.5|LINC02064|lncRNA|chr5:29389810:29389940:-	0	-
#Deleted in new
chr5	29395853	29395981	ENSG00000248391.5|LINC02064|lncRNA|chr5:29395853:29395981:-	0	-
#Deleted in new
chr5	29979668	29983114	ENSG00000280305.1|AC018765.1|lncRNA|chr5:29979668:29983114:+	0	+
#Deleted in new
chr5	31115546	31115581	ENSG00000254138.1|AC113386.1|lncRNA|chr5:31115546:31115581:-	0	-
#Partially deleted in new
chr5	311292	312411	ENSG00000249915.7|PDCD6|pc|chr5:311292:312411:+	0	+
#Deleted in new
chr5	313700	313850	ENSG00000249915.7|PDCD6|pc|chr5:313700:313850:+	0	+
#Partially deleted in new
chr5	31421750	31421867	ENSG00000113360.16|DROSHA|pc|chr5:31421750:31421867:-	0	-
#Deleted in new
chr5	31488981	31489083	ENSG00000113360.16|DROSHA|pc|chr5:31488981:31489083:-	0	-
#Deleted in new
chr5	31548489	31548687	ENSG00000082213.17|C5orf22|pc|chr5:31548489:31548687:+	0	+
#Partially deleted in new
chr5	31558572	31559875	ENSG00000279923.1|AC022417.1|lncRNA|chr5:31558572:31559875:+	0	+
#Deleted in new
chr5	31692886	31692974	ENSG00000133401.15|PDZD2|pc|chr5:31692886:31692974:+	0	+
#Partially deleted in new
chr5	31747643	31748078	ENSG00000250164.1|AC022447.7|lncRNA|chr5:31747643:31748078:-	0	-
#Deleted in new
chr5	32106123	32106180	ENSG00000250764.1|AC025178.1|lncRNA|chr5:32106123:32106180:-	0	-
#Deleted in new
chr5	32106400	32106502	ENSG00000250764.1|AC025178.1|lncRNA|chr5:32106400:32106502:-	0	-
#Deleted in new
chr5	32107320	32107460	ENSG00000133401.15|PDZD2|pc|chr5:32107320:32107460:+	0	+
#Deleted in new
chr5	32121494	32121579	ENSG00000250764.1|AC025178.1|lncRNA|chr5:32121494:32121579:-	0	-
#Deleted in new
chr5	32121859	32121941	ENSG00000250764.1|AC025178.1|lncRNA|chr5:32121859:32121941:-	0	-
#Deleted in new
chr5	322569	322662	ENSG00000063438.16|AHRR|pc|chr5:322569:322662:+	0	+
#Deleted in new
chr5	322639	322662	ENSG00000063438.16|AHRR|pc|chr5:322639:322662:+	0	+
#Deleted in new
chr5	32296353	32296470	ENSG00000150712.10|MTMR12|pc|chr5:32296353:32296470:-	0	-
#Partially deleted in new
chr5	32364163	32364938	ENSG00000056097.15|ZFR|pc|chr5:32364163:32364938:-	0	-
#Deleted in new
chr5	32536637	32536695	ENSG00000113387.11|SUB1|pc|chr5:32536637:32536695:+	0	+
#Deleted in new
chr5	32594570	32594872	ENSG00000113387.11|SUB1|pc|chr5:32594570:32594872:+	0	+
#Split in new
chr5	32594922	32599069	ENSG00000113387.11|SUB1|pc|chr5:32594922:32599069:+	0	+
#Deleted in new
chr5	32689069	32689186	ENSG00000113389.15|NPR3|pc|chr5:32689069:32689186:+	0	+
#Deleted in new
chr5	32716383	32716828	ENSG00000113389.15|NPR3|pc|chr5:32716383:32716828:+	0	+
#Deleted in new
chr5	32925638	32925831	ENSG00000250697.1|AC010343.3|lncRNA|chr5:32925638:32925831:-	0	-
#Deleted in new
chr5	32947442	32947821	ENSG00000248279.5|LINC02120|lncRNA|chr5:32947442:32947821:+	0	+
#Partially deleted in new
chr5	32950146	32950283	ENSG00000248279.5|LINC02120|lncRNA|chr5:32950146:32950283:+	0	+
#Deleted in new
chr5	32958613	32958697	ENSG00000248279.5|LINC02120|lncRNA|chr5:32958613:32958697:+	0	+
#Partially deleted in new
chr5	32961367	32962467	ENSG00000248279.5|LINC02120|lncRNA|chr5:32961367:32962467:+	0	+
#Deleted in new
chr5	33016950	33017095	ENSG00000251281.1|AC034223.2|lncRNA|chr5:33016950:33017095:-	0	-
#Deleted in new
chr5	33017566	33017607	ENSG00000251281.1|AC034223.2|lncRNA|chr5:33017566:33017607:-	0	-
#Deleted in new
chr5	33025398	33025724	ENSG00000249102.1|AC034223.1|lncRNA|chr5:33025398:33025724:+	0	+
#Deleted in new
chr5	33049234	33049401	ENSG00000250697.1|AC010343.3|lncRNA|chr5:33049234:33049401:-	0	-
#Deleted in new
chr5	33229734	33229858	ENSG00000251443.1|LINC02160|lncRNA|chr5:33229734:33229858:+	0	+
#Deleted in new
chr5	33248541	33248651	ENSG00000251443.1|LINC02160|lncRNA|chr5:33248541:33248651:+	0	+
#Deleted in new
chr5	33263499	33263666	ENSG00000250697.1|AC010343.3|lncRNA|chr5:33263499:33263666:-	0	-
#Deleted in new
chr5	33297731	33297910	ENSG00000250697.1|AC010343.3|lncRNA|chr5:33297731:33297910:-	0	-
#Deleted in new
chr5	33424024	33424146	ENSG00000249572.1|AC034231.1|lncRNA|chr5:33424024:33424146:-	0	-
#Deleted in new
chr5	33440204	33440619	ENSG00000249572.1|AC034231.1|lncRNA|chr5:33440204:33440619:-	0	-
#Deleted in new
chr5	33440695	33440791	ENSG00000113407.13|TARS|pc|chr5:33440695:33440791:+	0	+
#Deleted in new
chr5	33440738	33440776	ENSG00000113407.13|TARS|pc|chr5:33440738:33440776:+	0	+
#Deleted in new
chr5	33452340	33452439	ENSG00000113407.13|TARS|pc|chr5:33452340:33452439:+	0	+
#Deleted in new
chr5	33465986	33466216	ENSG00000113407.13|TARS|pc|chr5:33465986:33466216:+	0	+
#Deleted in new
chr5	33519615	33520066	ENSG00000250583.1|AC034232.2|lncRNA|chr5:33519615:33520066:-	0	-
#Deleted in new
chr5	33603441	33603725	ENSG00000151388.10|ADAMTS12|pc|chr5:33603441:33603725:-	0	-
#Partially deleted in new
chr5	33986177	33989502	ENSG00000242110.7|AMACR|pc|chr5:33986177:33989502:-	0	-
#Partially deleted in new
chr5	33987173	33989502	ENSG00000242110.7|AMACR|pc|chr5:33987173:33989502:-	0	-
#Partially deleted in new
chr5	33987173	33989502	ENSG00000273294.1|C1QTNF3-AMACR|pc|chr5:33987173:33989502:-	0	-
#Deleted in new
chr5	33988306	33988361	ENSG00000242110.7|AMACR|pc|chr5:33988306:33988361:-	0	-
#Deleted in new
chr5	33993947	33994120	ENSG00000242110.7|AMACR|pc|chr5:33993947:33994120:-	0	-
#Deleted in new
chr5	33994077	33994120	ENSG00000242110.7|AMACR|pc|chr5:33994077:33994120:-	0	-
#Deleted in new
chr5	34105749	34106336	ENSG00000278900.1|AC139792.2|lncRNA|chr5:34105749:34106336:-	0	-
#Deleted in new
chr5	34124417	34124528	ENSG00000273294.1|C1QTNF3-AMACR|pc|chr5:34124417:34124528:-	0	-
#Deleted in new
chr5	34158120	34158767	ENSG00000271771.1|AC139792.1|lncRNA|chr5:34158120:34158767:+	0	+
#Deleted in new
chr5	3417151	3419316	ENSG00000248118.1|LINC01019|lncRNA|chr5:3417151:3419316:-	0	-
#Deleted in new
chr5	3421070	3421304	ENSG00000248118.1|LINC01019|lncRNA|chr5:3421070:3421304:-	0	-
#Deleted in new
chr5	343527	343708	ENSG00000063438.16|AHRR|pc|chr5:343527:343708:+	0	+
#Deleted in new
chr5	3453704	3453787	ENSG00000249830.1|LINC02162|lncRNA|chr5:3453704:3453787:+	0	+
#Deleted in new
chr5	3461316	3461660	ENSG00000249830.1|LINC02162|lncRNA|chr5:3461316:3461660:+	0	+
#Deleted in new
chr5	34667262	34667379	ENSG00000039560.13|RAI14|pc|chr5:34667262:34667379:+	0	+
#Deleted in new
chr5	34685031	34685081	ENSG00000039560.13|RAI14|pc|chr5:34685031:34685081:+	0	+
#Deleted in new
chr5	34716788	34716878	ENSG00000039560.13|RAI14|pc|chr5:34716788:34716878:+	0	+
#Deleted in new
chr5	34728544	34728660	ENSG00000039560.13|RAI14|pc|chr5:34728544:34728660:+	0	+
#Deleted in new
chr5	34728573	34728660	ENSG00000039560.13|RAI14|pc|chr5:34728573:34728660:+	0	+
#Deleted in new
chr5	34896769	34896778	ENSG00000205838.13|TTC23L|pc|chr5:34896769:34896778:+	0	+
#Deleted in new
chr5	34896769	34896875	ENSG00000205838.13|TTC23L|pc|chr5:34896769:34896875:+	0	+
#Deleted in new
chr5	34913870	34914026	ENSG00000113456.18|RAD1|pc|chr5:34913870:34914026:-	0	-
#Deleted in new
chr5	34913926	34914026	ENSG00000113456.18|RAD1|pc|chr5:34913926:34914026:-	0	-
#Deleted in new
chr5	34913969	34914026	ENSG00000113456.18|RAD1|pc|chr5:34913969:34914026:-	0	-
#Partially deleted in new
chr5	34918521	34918989	ENSG00000113456.18|RAD1|pc|chr5:34918521:34918989:-	0	-
#Deleted in new
chr5	34949542	34949677	ENSG00000168724.14|DNAJC21|pc|chr5:34949542:34949677:+	0	+
#Partially deleted in new
chr5	34950443	34952743	ENSG00000168724.14|DNAJC21|pc|chr5:34950443:34952743:+	0	+
#Partially deleted in new
chr5	34954552	34958964	ENSG00000168724.14|DNAJC21|pc|chr5:34954552:34958964:+	0	+
#Deleted in new
chr5	3496228	3496857	ENSG00000250716.1|LINC01017|lncRNA|chr5:3496228:3496857:-	0	-
#Deleted in new
chr5	3497350	3497411	ENSG00000250716.1|LINC01017|lncRNA|chr5:3497350:3497411:-	0	-
#Deleted in new
chr5	3503926	3504004	ENSG00000250716.1|LINC01017|lncRNA|chr5:3503926:3504004:-	0	-
#Deleted in new
chr5	35135296	35135451	ENSG00000113494.16|PRLR|pc|chr5:35135296:35135451:-	0	-
#Deleted in new
chr5	3535761	3536094	ENSG00000248118.1|LINC01019|lncRNA|chr5:3535761:3536094:-	0	-
#Deleted in new
chr5	35675601	35675992	ENSG00000152582.13|SPEF2|pc|chr5:35675601:35675992:+	0	+
#Deleted in new
chr5	35678483	35678709	ENSG00000248969.1|AC137810.1|lncRNA|chr5:35678483:35678709:-	0	-
#Deleted in new
chr5	35697957	35698035	ENSG00000248969.1|AC137810.1|lncRNA|chr5:35697957:35698035:-	0	-
#Partially deleted in new
chr5	35807638	35808238	ENSG00000152582.13|SPEF2|pc|chr5:35807638:35808238:+	0	+
#Partially deleted in new
chr5	35856294	35856687	ENSG00000168685.14|IL7R|pc|chr5:35856294:35856687:+	0	+
#Deleted in new
chr5	35939722	35939993	ENSG00000249748.1|AC112204.2|lncRNA|chr5:35939722:35939993:+	0	+
#Partially deleted in new
chr5	35951009	35954478	ENSG00000145626.11|UGT3A1|pc|chr5:35951009:35954478:-	0	-
#Deleted in new
chr5	35960755	35962951	ENSG00000145626.11|UGT3A1|pc|chr5:35960755:35962951:-	0	-
#Deleted in new
chr5	35961988	35962951	ENSG00000145626.11|UGT3A1|pc|chr5:35961988:35962951:-	0	-
#Deleted in new
chr5	35962873	35962951	ENSG00000145626.11|UGT3A1|pc|chr5:35962873:35962951:-	0	-
#Duplicated in new
chr5	35991146	35991598	ENSG00000145626.11|UGT3A1|pc|chr5:35991146:35991598:-	0	-
#Deleted in new
chr5	35997238	35997329	ENSG00000145626.11|UGT3A1|pc|chr5:35997238:35997329:-	0	-
#Deleted in new
chr5	36000967	36001028	ENSG00000145626.11|UGT3A1|pc|chr5:36000967:36001028:-	0	-
#Split in new
chr5	36035016	36035974	ENSG00000168671.9|UGT3A2|pc|chr5:36035016:36035974:-	0	-
#Partially deleted in new
chr5	36071081	36071358	ENSG00000168671.9|UGT3A2|pc|chr5:36071081:36071358:-	0	-
#Deleted in new
chr5	36212263	36212313	ENSG00000152620.12|NADK2|pc|chr5:36212263:36212313:-	0	-
#Partially deleted in new
chr5	36213012	36213177	ENSG00000152620.12|NADK2|pc|chr5:36213012:36213177:-	0	-
#Deleted in new
chr5	36612745	36612908	ENSG00000079215.13|SLC1A3|pc|chr5:36612745:36612908:+	0	+
#Deleted in new
chr5	36612745	36613487	ENSG00000079215.13|SLC1A3|pc|chr5:36612745:36613487:+	0	+
#Deleted in new
chr5	36612809	36613055	ENSG00000079215.13|SLC1A3|pc|chr5:36612809:36613055:+	0	+
#Deleted in new
chr5	36613098	36613299	ENSG00000079215.13|SLC1A3|pc|chr5:36613098:36613299:+	0	+
#Deleted in new
chr5	36636018	36636378	ENSG00000274441.1|AC008957.2|lncRNA|chr5:36636018:36636378:-	0	-
#Deleted in new
chr5	36638787	36638790	ENSG00000274441.1|AC008957.2|lncRNA|chr5:36638787:36638790:-	0	-
#Deleted in new
chr5	36649314	36649347	ENSG00000274441.1|AC008957.2|lncRNA|chr5:36649314:36649347:-	0	-
#Partially deleted in new
chr5	36670820	36670903	ENSG00000079215.13|SLC1A3|pc|chr5:36670820:36670903:+	0	+
#Deleted in new
chr5	36725113	36725173	ENSG00000250155.1|AC008957.1|lncRNA|chr5:36725113:36725173:-	0	-
#Deleted in new
chr5	36725113	36725176	ENSG00000250155.1|AC008957.1|lncRNA|chr5:36725113:36725176:-	0	-
#Deleted in new
chr5	36725113	36725195	ENSG00000250155.1|AC008957.1|lncRNA|chr5:36725113:36725195:-	0	-
#Deleted in new
chr5	367807	367992	ENSG00000063438.16|AHRR|pc|chr5:367807:367992:+	0	+
#Deleted in new
chr5	37114959	37115049	ENSG00000197603.13|C5orf42|pc|chr5:37114959:37115049:-	0	-
#Deleted in new
chr5	37249244	37249428	ENSG00000197603.13|C5orf42|pc|chr5:37249244:37249428:-	0	-
#Deleted in new
chr5	37479469	37479512	ENSG00000082068.8|WDR70|pc|chr5:37479469:37479512:+	0	+
#Deleted in new
chr5	376609	376716	ENSG00000063438.16|AHRR|pc|chr5:376609:376716:+	0	+
#Deleted in new
chr5	37687909	37688007	ENSG00000082068.8|WDR70|pc|chr5:37687909:37688007:+	0	+
#Deleted in new
chr5	37811588	37811782	ENSG00000248587.7|GDNF-AS1|lncRNA|chr5:37811588:37811782:+	0	+
#Deleted in new
chr5	37813590	37813705	ENSG00000248587.7|GDNF-AS1|lncRNA|chr5:37813590:37813705:+	0	+
#Deleted in new
chr5	37861260	37861385	ENSG00000248587.7|GDNF-AS1|lncRNA|chr5:37861260:37861385:+	0	+
#Deleted in new
chr5	37899362	37899668	ENSG00000248539.1|LINC02117|lncRNA|chr5:37899362:37899668:-	0	-
#Deleted in new
chr5	37919739	37919790	ENSG00000248539.1|LINC02117|lncRNA|chr5:37919739:37919790:-	0	-
#Deleted in new
chr5	37919953	37920097	ENSG00000248539.1|LINC02117|lncRNA|chr5:37919953:37920097:-	0	-
#Deleted in new
chr5	38290599	38290986	ENSG00000248730.1|EGFLAM-AS4|lncRNA|chr5:38290599:38290986:-	0	-
#Deleted in new
chr5	38305431	38305617	ENSG00000164318.17|EGFLAM|pc|chr5:38305431:38305617:+	0	+
#Deleted in new
chr5	38346492	38346551	ENSG00000249071.2|EGFLAM-AS3|lncRNA|chr5:38346492:38346551:-	0	-
#Deleted in new
chr5	38401068	38401221	ENSG00000248572.5|EGFLAM-AS2|lncRNA|chr5:38401068:38401221:-	0	-
#Deleted in new
chr5	38401823	38402081	ENSG00000248572.5|EGFLAM-AS2|lncRNA|chr5:38401823:38402081:-	0	-
#Deleted in new
chr5	38403234	38403362	ENSG00000248572.5|EGFLAM-AS2|lncRNA|chr5:38403234:38403362:-	0	-
#Deleted in new
chr5	38403398	38403413	ENSG00000248572.5|EGFLAM-AS2|lncRNA|chr5:38403398:38403413:-	0	-
#Deleted in new
chr5	38403540	38403891	ENSG00000164318.17|EGFLAM|pc|chr5:38403540:38403891:+	0	+
#Deleted in new
chr5	38403547	38403891	ENSG00000164318.17|EGFLAM|pc|chr5:38403547:38403891:+	0	+
#Partially deleted in new
chr5	38490619	38490762	ENSG00000113594.9|LIFR|pc|chr5:38490619:38490762:-	0	-
#Deleted in new
chr5	38606204	38606306	ENSG00000113594.9|LIFR|pc|chr5:38606204:38606306:-	0	-
#Deleted in new
chr5	38644349	38644445	ENSG00000244968.6|LIFR-AS1|lncRNA|chr5:38644349:38644445:+	0	+
#Deleted in new
chr5	38646631	38646714	ENSG00000244968.6|LIFR-AS1|lncRNA|chr5:38646631:38646714:+	0	+
#Deleted in new
chr5	38647232	38647435	ENSG00000244968.6|LIFR-AS1|lncRNA|chr5:38647232:38647435:+	0	+
#Partially deleted in new
chr5	38966814	38967227	ENSG00000164327.12|RICTOR|pc|chr5:38966814:38967227:-	0	-
#Partially deleted in new
chr5	38969686	38971959	ENSG00000164327.12|RICTOR|pc|chr5:38969686:38971959:-	0	-
#Deleted in new
chr5	39212677	39213017	ENSG00000082074.15|FYB1|pc|chr5:39212677:39213017:-	0	-
#Deleted in new
chr5	39250670	39250806	ENSG00000082074.15|FYB1|pc|chr5:39250670:39250806:-	0	-
#Deleted in new
chr5	39417188	39417284	ENSG00000153071.14|DAB2|pc|chr5:39417188:39417284:-	0	-
#Deleted in new
chr5	39521518	39521627	ENSG00000271334.5|LINC02104|lncRNA|chr5:39521518:39521627:+	0	+
#Deleted in new
chr5	39925164	39925258	ENSG00000250048.2|LINC00603|lncRNA|chr5:39925164:39925258:+	0	+
#Deleted in new
chr5	40010911	40011010	ENSG00000250048.2|LINC00603|lncRNA|chr5:40010911:40011010:+	0	+
#Deleted in new
chr5	40011278	40011349	ENSG00000250048.2|LINC00603|lncRNA|chr5:40011278:40011349:+	0	+
#Deleted in new
chr5	40052289	40052476	ENSG00000250048.2|LINC00603|lncRNA|chr5:40052289:40052476:+	0	+
#Deleted in new
chr5	40240172	40240436	ENSG00000250585.2|LINC00604|lncRNA|chr5:40240172:40240436:+	0	+
#Deleted in new
chr5	40241434	40241556	ENSG00000250585.2|LINC00604|lncRNA|chr5:40241434:40241556:+	0	+
#Deleted in new
chr5	40260656	40260853	ENSG00000250585.2|LINC00604|lncRNA|chr5:40260656:40260853:+	0	+
#Deleted in new
chr5	40267355	40267653	ENSG00000250585.2|LINC00604|lncRNA|chr5:40267355:40267653:+	0	+
#Deleted in new
chr5	40267355	40267657	ENSG00000250585.2|LINC00604|lncRNA|chr5:40267355:40267657:+	0	+
#Deleted in new
chr5	4033712	4034119	ENSG00000249994.1|AC025187.1|lncRNA|chr5:4033712:4034119:-	0	-
#Deleted in new
chr5	40415136	40415198	ENSG00000283286.1|AC093277.1|lncRNA|chr5:40415136:40415198:+	0	+
#Deleted in new
chr5	4041732	4041764	ENSG00000249994.1|AC025187.1|lncRNA|chr5:4041732:4041764:-	0	-
#Partially deleted in new
chr5	40512332	40513069	ENSG00000113638.13|TTC33|pc|chr5:40512332:40513069:-	0	-
#Deleted in new
chr5	40568104	40569581	ENSG00000113638.13|TTC33|pc|chr5:40568104:40569581:-	0	-
#Deleted in new
chr5	40603931	40604036	ENSG00000113638.13|TTC33|pc|chr5:40603931:40604036:-	0	-
#Partially deleted in new
chr5	40768384	40768937	ENSG00000132356.11|PRKAA1|pc|chr5:40768384:40768937:-	0	-
#Partially deleted in new
chr5	40777015	40777586	ENSG00000132356.11|PRKAA1|pc|chr5:40777015:40777586:-	0	-
#Deleted in new
chr5	40777159	40777334	ENSG00000132356.11|PRKAA1|pc|chr5:40777159:40777334:-	0	-
#Partially deleted in new
chr5	40825261	40832573	ENSG00000145592.13|RPL37|pc|chr5:40825261:40832573:-	0	-
#Deleted in new
chr5	40827702	40827951	ENSG00000145592.13|RPL37|pc|chr5:40827702:40827951:-	0	-
#Deleted in new
chr5	40831322	40831394	ENSG00000145592.13|RPL37|pc|chr5:40831322:40831394:-	0	-
#Partially deleted in new
chr5	40832102	40832573	ENSG00000145592.13|RPL37|pc|chr5:40832102:40832573:-	0	-
#Deleted in new
chr5	40833960	40834037	ENSG00000145592.13|RPL37|pc|chr5:40833960:40834037:-	0	-
#Deleted in new
chr5	40859997	40860175	ENSG00000132357.13|CARD6|pc|chr5:40859997:40860175:+	0	+
#Deleted in new
chr5	41261193	41261438	ENSG00000039537.13|C6|pc|chr5:41261193:41261438:-	0	-
#Deleted in new
chr5	4135681	4135845	ENSG00000250921.1|LINC02063|lncRNA|chr5:4135681:4135845:+	0	+
#Deleted in new
chr5	4143246	4143648	ENSG00000250921.1|LINC02063|lncRNA|chr5:4143246:4143648:+	0	+
#Deleted in new
chr5	41908308	41908394	ENSG00000205765.8|C5orf51|pc|chr5:41908308:41908394:+	0	+
#Deleted in new
chr5	41928517	41928691	ENSG00000151876.12|FBXO4|pc|chr5:41928517:41928691:+	0	+
#Deleted in new
chr5	420919	421340	ENSG00000063438.16|AHRR|pc|chr5:420919:421340:+	0	+
#Deleted in new
chr5	42188265	42191523	ENSG00000260786.1|AC108099.1|lncRNA|chr5:42188265:42191523:+	0	+
#Deleted in new
chr5	42549555	42549697	ENSG00000112964.13|GHR|pc|chr5:42549555:42549697:+	0	+
#Deleted in new
chr5	42550079	42550116	ENSG00000112964.13|GHR|pc|chr5:42550079:42550116:+	0	+
#Partially deleted in new
chr5	42646331	42646363	ENSG00000112964.13|GHR|pc|chr5:42646331:42646363:+	0	+
#Deleted in new
chr5	427636	427690	ENSG00000063438.16|AHRR|pc|chr5:427636:427690:+	0	+
#Partially deleted in new
chr5	42807603	42807689	ENSG00000250722.5|SELENOP|pc|chr5:42807603:42807689:-	0	-
#Deleted in new
chr5	42809759	42809788	ENSG00000250722.5|SELENOP|pc|chr5:42809759:42809788:-	0	-
#Partially deleted in new
chr5	42810690	42810778	ENSG00000250722.5|SELENOP|pc|chr5:42810690:42810778:-	0	-
#Deleted in new
chr5	42825440	42825896	ENSG00000250722.5|SELENOP|pc|chr5:42825440:42825896:-	0	-
#Deleted in new
chr5	43006732	43007543	ENSG00000271788.1|AC008875.1|lncRNA|chr5:43006732:43007543:-	0	-
#Deleted in new
chr5	43014413	43015150	ENSG00000177738.3|AC025171.1|lncRNA|chr5:43014413:43015150:-	0	-
#Deleted in new
chr5	43014733	43015150	ENSG00000177738.3|AC025171.1|lncRNA|chr5:43014733:43015150:-	0	-
#Deleted in new
chr5	43014735	43015150	ENSG00000177738.3|AC025171.1|lncRNA|chr5:43014735:43015150:-	0	-
#Deleted in new
chr5	43016361	43016477	ENSG00000177738.3|AC025171.1|lncRNA|chr5:43016361:43016477:-	0	-
#Deleted in new
chr5	43017073	43018724	ENSG00000177738.3|AC025171.1|lncRNA|chr5:43017073:43018724:-	0	-
#Deleted in new
chr5	43017073	43018811	ENSG00000177738.3|AC025171.1|lncRNA|chr5:43017073:43018811:-	0	-
#Deleted in new
chr5	43018428	43018672	ENSG00000251131.1|AC025171.3|lncRNA|chr5:43018428:43018672:+	0	+
#Deleted in new
chr5	43018482	43018672	ENSG00000251131.1|AC025171.3|lncRNA|chr5:43018482:43018672:+	0	+
#Deleted in new
chr5	43019235	43019316	ENSG00000251131.1|AC025171.3|lncRNA|chr5:43019235:43019316:+	0	+
#Deleted in new
chr5	43023918	43024097	ENSG00000251131.1|AC025171.3|lncRNA|chr5:43023918:43024097:+	0	+
#Deleted in new
chr5	43024198	43024234	ENSG00000251131.1|AC025171.3|lncRNA|chr5:43024198:43024234:+	0	+
#Deleted in new
chr5	43024198	43024247	ENSG00000251131.1|AC025171.3|lncRNA|chr5:43024198:43024247:+	0	+
#Deleted in new
chr5	43033715	43034635	ENSG00000272382.1|AC025171.5|lncRNA|chr5:43033715:43034635:+	0	+
#Deleted in new
chr5	43041574	43041874	ENSG00000215068.7|AC025171.2|lncRNA|chr5:43041574:43041874:+	0	+
#Deleted in new
chr5	43041756	43041874	ENSG00000215068.7|AC025171.2|lncRNA|chr5:43041756:43041874:+	0	+
#Deleted in new
chr5	43042092	43043567	ENSG00000215068.7|AC025171.2|lncRNA|chr5:43042092:43043567:+	0	+
#Deleted in new
chr5	43042132	43043567	ENSG00000215068.7|AC025171.2|lncRNA|chr5:43042132:43043567:+	0	+
#Deleted in new
chr5	43043055	43043170	ENSG00000177721.4|ANXA2R|pc|chr5:43043055:43043170:-	0	-
#Deleted in new
chr5	43043471	43043567	ENSG00000215068.7|AC025171.2|lncRNA|chr5:43043471:43043567:+	0	+
#Deleted in new
chr5	43044392	43045268	ENSG00000215068.7|AC025171.2|lncRNA|chr5:43044392:43045268:+	0	+
#Deleted in new
chr5	43044442	43045264	ENSG00000215068.7|AC025171.2|lncRNA|chr5:43044442:43045264:+	0	+
#Deleted in new
chr5	43044442	43045390	ENSG00000215068.7|AC025171.2|lncRNA|chr5:43044442:43045390:+	0	+
#Deleted in new
chr5	43044698	43044886	ENSG00000215068.7|AC025171.2|lncRNA|chr5:43044698:43044886:+	0	+
#Deleted in new
chr5	43044698	43045268	ENSG00000215068.7|AC025171.2|lncRNA|chr5:43044698:43045268:+	0	+
#Partially deleted in new
chr5	43061394	43062441	ENSG00000272144.1|AC025171.4|lncRNA|chr5:43061394:43062441:+	0	+
#Deleted in new
chr5	43065175	43065233	ENSG00000172262.11|ZNF131|pc|chr5:43065175:43065233:+	0	+
#Deleted in new
chr5	43067086	43067157	ENSG00000177738.3|AC025171.1|lncRNA|chr5:43067086:43067157:-	0	-
#Deleted in new
chr5	43067297	43067419	ENSG00000177738.3|AC025171.1|lncRNA|chr5:43067297:43067419:-	0	-
#Deleted in new
chr5	43067580	43067786	ENSG00000172262.11|ZNF131|pc|chr5:43067580:43067786:+	0	+
#Deleted in new
chr5	43067969	43068217	ENSG00000172262.11|ZNF131|pc|chr5:43067969:43068217:+	0	+
#Deleted in new
chr5	43068050	43068217	ENSG00000172262.11|ZNF131|pc|chr5:43068050:43068217:+	0	+
#Deleted in new
chr5	43068056	43068217	ENSG00000172262.11|ZNF131|pc|chr5:43068056:43068217:+	0	+
#Deleted in new
chr5	43068115	43068217	ENSG00000172262.11|ZNF131|pc|chr5:43068115:43068217:+	0	+
#Deleted in new
chr5	43079899	43079954	ENSG00000172262.11|ZNF131|pc|chr5:43079899:43079954:+	0	+
#Deleted in new
chr5	43079899	43080343	ENSG00000172262.11|ZNF131|pc|chr5:43079899:43080343:+	0	+
#Deleted in new
chr5	43080205	43080503	ENSG00000172262.11|ZNF131|pc|chr5:43080205:43080503:+	0	+
#Deleted in new
chr5	43093022	43093558	ENSG00000172262.11|ZNF131|pc|chr5:43093022:43093558:+	0	+
#Deleted in new
chr5	43099019	43099338	ENSG00000172262.11|ZNF131|pc|chr5:43099019:43099338:+	0	+
#Deleted in new
chr5	43116446	43116630	ENSG00000172262.11|ZNF131|pc|chr5:43116446:43116630:+	0	+
#Deleted in new
chr5	43119922	43120051	ENSG00000172262.11|ZNF131|pc|chr5:43119922:43120051:+	0	+
#Deleted in new
chr5	43167929	43168029	ENSG00000172262.11|ZNF131|pc|chr5:43167929:43168029:+	0	+
#Deleted in new
chr5	43179828	43179950	ENSG00000172262.11|ZNF131|pc|chr5:43179828:43179950:+	0	+
#Partially deleted in new
chr5	43194782	43194875	ENSG00000177453.7|NIM1K|pc|chr5:43194782:43194875:+	0	+
#Deleted in new
chr5	43240259	43240390	ENSG00000177453.7|NIM1K|pc|chr5:43240259:43240390:+	0	+
#Deleted in new
chr5	43242821	43242944	ENSG00000177453.7|NIM1K|pc|chr5:43242821:43242944:+	0	+
#Deleted in new
chr5	43376644	43377484	ENSG00000151882.11|CCL28|pc|chr5:43376644:43377484:-	0	-
#Partially deleted in new
chr5	43379192	43382052	ENSG00000151882.11|CCL28|pc|chr5:43379192:43382052:-	0	-
#Partially deleted in new
chr5	43397034	43397264	ENSG00000151882.11|CCL28|pc|chr5:43397034:43397264:-	0	-
#Deleted in new
chr5	43476113	43476258	ENSG00000151881.14|TMEM267|pc|chr5:43476113:43476258:-	0	-
#Deleted in new
chr5	43479889	43479987	ENSG00000151881.14|TMEM267|pc|chr5:43479889:43479987:-	0	-
#Deleted in new
chr5	43488043	43488142	ENSG00000249492.1|AC114956.3|lncRNA|chr5:43488043:43488142:+	0	+
#Deleted in new
chr5	43488043	43488440	ENSG00000249492.1|AC114956.3|lncRNA|chr5:43488043:43488440:+	0	+
#Deleted in new
chr5	43511057	43511299	ENSG00000248554.1|AC114956.2|lncRNA|chr5:43511057:43511299:+	0	+
#Deleted in new
chr5	43515853	43515964	ENSG00000248240.1|AC114956.1|lncRNA|chr5:43515853:43515964:+	0	+
#Deleted in new
chr5	43521557	43521811	ENSG00000248554.1|AC114956.2|lncRNA|chr5:43521557:43521811:+	0	+
#Deleted in new
chr5	43557700	43557734	ENSG00000172239.13|PAIP1|pc|chr5:43557700:43557734:-	0	-
#Deleted in new
chr5	43571593	43575935	ENSG00000248092.7|NNT-AS1|lncRNA|chr5:43571593:43575935:-	0	-
#Deleted in new
chr5	43575777	43575935	ENSG00000248092.7|NNT-AS1|lncRNA|chr5:43575777:43575935:-	0	-
#Deleted in new
chr5	43577641	43579200	ENSG00000248092.7|NNT-AS1|lncRNA|chr5:43577641:43579200:-	0	-
#Deleted in new
chr5	43578336	43578579	ENSG00000248092.7|NNT-AS1|lncRNA|chr5:43578336:43578579:-	0	-
#Deleted in new
chr5	43579129	43579200	ENSG00000248092.7|NNT-AS1|lncRNA|chr5:43579129:43579200:-	0	-
#Deleted in new
chr5	43583466	43583566	ENSG00000248092.7|NNT-AS1|lncRNA|chr5:43583466:43583566:-	0	-
#Partially deleted in new
chr5	43613090	43613650	ENSG00000112992.16|NNT|pc|chr5:43613090:43613650:+	0	+
#Deleted in new
chr5	43644191	43644325	ENSG00000112992.16|NNT|pc|chr5:43644191:43644325:+	0	+
#Deleted in new
chr5	43644610	43644802	ENSG00000112992.16|NNT|pc|chr5:43644610:43644802:+	0	+
#Deleted in new
chr5	43644744	43644802	ENSG00000112992.16|NNT|pc|chr5:43644744:43644802:+	0	+
#Deleted in new
chr5	43645356	43645510	ENSG00000112992.16|NNT|pc|chr5:43645356:43645510:+	0	+
#Deleted in new
chr5	43645356	43645665	ENSG00000112992.16|NNT|pc|chr5:43645356:43645665:+	0	+
#Deleted in new
chr5	43647923	43648451	ENSG00000112992.16|NNT|pc|chr5:43647923:43648451:+	0	+
#Deleted in new
chr5	43649146	43649308	ENSG00000112992.16|NNT|pc|chr5:43649146:43649308:+	0	+
#Deleted in new
chr5	43650476	43650587	ENSG00000112992.16|NNT|pc|chr5:43650476:43650587:+	0	+
#Partially deleted in new
chr5	441497	443160	ENSG00000221990.4|EXOC3-AS1|lncRNA|chr5:441497:443160:-	0	-
#Partially deleted in new
chr5	441529	443143	ENSG00000221990.4|EXOC3-AS1|lncRNA|chr5:441529:443143:-	0	-
#Deleted in new
chr5	4436849	4438007	ENSG00000260763.1|AC106799.3|lncRNA|chr5:4436849:4438007:-	0	-
#Deleted in new
chr5	4438117	4440259	ENSG00000260763.1|AC106799.3|lncRNA|chr5:4438117:4440259:-	0	-
#Partially deleted in new
chr5	44412390	44413989	ENSG00000248464.1|FGF10-AS1|lncRNA|chr5:44412390:44413989:+	0	+
#Deleted in new
chr5	44504292	44504472	ENSG00000249203.1|LINC02224|lncRNA|chr5:44504292:44504472:-	0	-
#Deleted in new
chr5	4451929	4452054	ENSG00000248973.1|AC106799.2|lncRNA|chr5:4451929:4452054:-	0	-
#Deleted in new
chr5	44698430	44698713	ENSG00000250418.1|AC093292.1|lncRNA|chr5:44698430:44698713:-	0	-
#Deleted in new
chr5	44700642	44700808	ENSG00000250418.1|AC093292.1|lncRNA|chr5:44700642:44700808:-	0	-
#Partially deleted in new
chr5	447017	447314	ENSG00000180104.15|EXOC3|pc|chr5:447017:447314:+	0	+
#Partially deleted in new
chr5	44745137	44745408	ENSG00000251141.5|AC093297.2|lncRNA|chr5:44745137:44745408:-	0	-
#Deleted in new
chr5	44745941	44746038	ENSG00000251141.5|AC093297.2|lncRNA|chr5:44745941:44746038:-	0	-
#Deleted in new
chr5	44745996	44746038	ENSG00000251141.5|AC093297.2|lncRNA|chr5:44745996:44746038:-	0	-
#Deleted in new
chr5	44752948	44753031	ENSG00000248779.1|AC093297.1|lncRNA|chr5:44752948:44753031:+	0	+
#Deleted in new
chr5	44762085	44762162	ENSG00000248779.1|AC093297.1|lncRNA|chr5:44762085:44762162:+	0	+
#Deleted in new
chr5	44765313	44765744	ENSG00000248779.1|AC093297.1|lncRNA|chr5:44765313:44765744:+	0	+
#Deleted in new
chr5	44785048	44785181	ENSG00000251141.5|AC093297.2|lncRNA|chr5:44785048:44785181:-	0	-
#Deleted in new
chr5	44786825	44786952	ENSG00000251141.5|AC093297.2|lncRNA|chr5:44786825:44786952:-	0	-
#Deleted in new
chr5	44826075	44828592	ENSG00000272335.1|AC093297.3|lncRNA|chr5:44826075:44828592:+	0	+
#Deleted in new
chr5	45035198	45035276	ENSG00000248148.1|AC114954.1|lncRNA|chr5:45035198:45035276:+	0	+
#Deleted in new
chr5	4522264	4522367	ENSG00000248973.1|AC106799.2|lncRNA|chr5:4522264:4522367:-	0	-
#Deleted in new
chr5	45480124	45480136	ENSG00000164588.6|HCN1|pc|chr5:45480124:45480136:-	0	-
#Deleted in new
chr5	45890215	45890641	ENSG00000250122.1|AC122694.1|lncRNA|chr5:45890215:45890641:+	0	+
#Deleted in new
chr5	45895833	45895970	ENSG00000250122.1|AC122694.1|lncRNA|chr5:45895833:45895970:+	0	+
#Split in new
chr5	466726	468609	ENSG00000180104.15|EXOC3|pc|chr5:466726:468609:+	0	+
#Deleted in new
chr5	468869	468942	ENSG00000180104.15|EXOC3|pc|chr5:468869:468942:+	0	+
#Deleted in new
chr5	469789	469987	ENSG00000180104.15|EXOC3|pc|chr5:469789:469987:+	0	+
#Deleted in new
chr5	469855	469987	ENSG00000180104.15|EXOC3|pc|chr5:469855:469987:+	0	+
#Deleted in new
chr5	472678	472743	ENSG00000188242.4|PP7080|lncRNA|chr5:472678:472743:-	0	-
#Deleted in new
chr5	472678	472876	ENSG00000188242.4|PP7080|lncRNA|chr5:472678:472876:-	0	-
#Partially deleted in new
chr5	472678	472960	ENSG00000188242.4|PP7080|lncRNA|chr5:472678:472960:-	0	-
#Partially deleted in new
chr5	4775475	4775881	ENSG00000248311.1|AC026719.1|lncRNA|chr5:4775475:4775881:-	0	-
#Deleted in new
chr5	477805	477849	ENSG00000225138.7|SLC9A3-AS1|lncRNA|chr5:477805:477849:+	0	+
#Deleted in new
chr5	477805	478651	ENSG00000225138.7|SLC9A3-AS1|lncRNA|chr5:477805:478651:+	0	+
#Partially deleted in new
chr5	478122	480884	ENSG00000225138.7|SLC9A3-AS1|lncRNA|chr5:478122:480884:+	0	+
#Deleted in new
chr5	4784870	4784964	ENSG00000248973.1|AC106799.2|lncRNA|chr5:4784870:4784964:-	0	-
#Deleted in new
chr5	480361	480467	ENSG00000225138.7|SLC9A3-AS1|lncRNA|chr5:480361:480467:+	0	+
#Deleted in new
chr5	480361	480508	ENSG00000225138.7|SLC9A3-AS1|lncRNA|chr5:480361:480508:+	0	+
#Deleted in new
chr5	480361	480665	ENSG00000225138.7|SLC9A3-AS1|lncRNA|chr5:480361:480665:+	0	+
#Deleted in new
chr5	4866015	4866221	ENSG00000248973.1|AC106799.2|lncRNA|chr5:4866015:4866221:-	0	-
#Deleted in new
chr5	4866520	4866587	ENSG00000249941.1|AC026415.1|lncRNA|chr5:4866520:4866587:+	0	+
#Deleted in new
chr5	4874223	4874343	ENSG00000249941.1|AC026415.1|lncRNA|chr5:4874223:4874343:+	0	+
#Deleted in new
chr5	4874475	4874759	ENSG00000249941.1|AC026415.1|lncRNA|chr5:4874475:4874759:+	0	+
#Deleted in new
chr5	4970329	4970425	ENSG00000251506.1|AC010451.3|lncRNA|chr5:4970329:4970425:-	0	-
#Deleted in new
chr5	5021628	5021721	ENSG00000250481.1|AC010451.1|lncRNA|chr5:5021628:5021721:-	0	-
#Deleted in new
chr5	5034132	5034267	ENSG00000250481.1|AC010451.1|lncRNA|chr5:5034132:5034267:-	0	-
#Deleted in new
chr5	5034358	5034537	ENSG00000215231.7|LINC01020|lncRNA|chr5:5034358:5034537:+	0	+
#Deleted in new
chr5	5034462	5034537	ENSG00000215231.7|LINC01020|lncRNA|chr5:5034462:5034537:+	0	+
#Deleted in new
chr5	5038669	5038798	ENSG00000215231.7|LINC01020|lncRNA|chr5:5038669:5038798:+	0	+
#Deleted in new
chr5	5038685	5038798	ENSG00000215231.7|LINC01020|lncRNA|chr5:5038685:5038798:+	0	+
#Deleted in new
chr5	50428458	50428727	ENSG00000170571.11|EMB|pc|chr5:50428458:50428727:-	0	-
#Deleted in new
chr5	50443189	50443248	ENSG00000170571.11|EMB|pc|chr5:50443189:50443248:-	0	-
#Partially deleted in new
chr5	5046795	5047214	ENSG00000251426.1|AC010451.2|lncRNA|chr5:5046795:5047214:-	0	-
#Partially deleted in new
chr5	5046979	5047214	ENSG00000251426.1|AC010451.2|lncRNA|chr5:5046979:5047214:-	0	-
#Deleted in new
chr5	5049371	5049497	ENSG00000251426.1|AC010451.2|lncRNA|chr5:5049371:5049497:-	0	-
#Deleted in new
chr5	5057561	5057828	ENSG00000215231.7|LINC01020|lncRNA|chr5:5057561:5057828:+	0	+
#Deleted in new
chr5	5057561	5057873	ENSG00000215231.7|LINC01020|lncRNA|chr5:5057561:5057873:+	0	+
#Deleted in new
chr5	5057730	5057828	ENSG00000215231.7|LINC01020|lncRNA|chr5:5057730:5057828:+	0	+
#Deleted in new
chr5	5059563	5059681	ENSG00000215231.7|LINC01020|lncRNA|chr5:5059563:5059681:+	0	+
#Deleted in new
chr5	50662858	50663266	ENSG00000271752.1|AC112187.3|lncRNA|chr5:50662858:50663266:-	0	-
#Deleted in new
chr5	5066902	5067104	ENSG00000215231.7|LINC01020|lncRNA|chr5:5066902:5067104:+	0	+
#Deleted in new
chr5	5066902	5067329	ENSG00000215231.7|LINC01020|lncRNA|chr5:5066902:5067329:+	0	+
#Deleted in new
chr5	5069191	5069515	ENSG00000250529.1|LINC02121|lncRNA|chr5:5069191:5069515:-	0	-
#Partially deleted in new
chr5	5069352	5070004	ENSG00000215231.7|LINC01020|lncRNA|chr5:5069352:5070004:+	0	+
#Deleted in new
chr5	50738979	50739086	ENSG00000151883.17|PARP8|pc|chr5:50738979:50739086:+	0	+
#Deleted in new
chr5	50741830	50741951	ENSG00000151883.17|PARP8|pc|chr5:50741830:50741951:+	0	+
#Deleted in new
chr5	50757118	50757215	ENSG00000151883.17|PARP8|pc|chr5:50757118:50757215:+	0	+
#Partially deleted in new
chr5	50933612	50933810	ENSG00000251601.1|AC022441.2|lncRNA|chr5:50933612:50933810:-	0	-
#Deleted in new
chr5	5132779	5133232	ENSG00000250579.1|AC022424.1|lncRNA|chr5:5132779:5133232:-	0	-
#Deleted in new
chr5	5133636	5133770	ENSG00000250579.1|AC022424.1|lncRNA|chr5:5133636:5133770:-	0	-
#Deleted in new
chr5	5133867	5134070	ENSG00000250579.1|AC022424.1|lncRNA|chr5:5133867:5134070:-	0	-
#Deleted in new
chr5	5139955	5140054	ENSG00000250579.1|AC022424.1|lncRNA|chr5:5139955:5140054:-	0	-
#Deleted in new
chr5	5142137	5142371	ENSG00000250866.1|AC022424.2|lncRNA|chr5:5142137:5142371:-	0	-
#Deleted in new
chr5	5175994	5176214	ENSG00000250866.1|AC022424.2|lncRNA|chr5:5175994:5176214:-	0	-
#Deleted in new
chr5	52009814	52009849	ENSG00000248789.5|LINC02118|lncRNA|chr5:52009814:52009849:+	0	+
#Partially deleted in new
chr5	5222788	5223727	ENSG00000145536.15|ADAMTS16|pc|chr5:5222788:5223727:+	0	+
#Partially deleted in new
chr5	524704	524963	ENSG00000250385.1|AC106772.2|lncRNA|chr5:524704:524963:+	0	+
#Deleted in new
chr5	52785534	52785592	ENSG00000248898.1|AC022126.1|lncRNA|chr5:52785534:52785592:-	0	-
#Deleted in new
chr5	52867037	52867218	ENSG00000213949.8|ITGA1|pc|chr5:52867037:52867218:+	0	+
#Deleted in new
chr5	52978251	52978399	ENSG00000249899.5|AC025180.1|lncRNA|chr5:52978251:52978399:-	0	-
#Deleted in new
chr5	52978267	52978399	ENSG00000249899.5|AC025180.1|lncRNA|chr5:52978267:52978399:-	0	-
#Partially deleted in new
chr5	53109841	53110148	ENSG00000247796.2|AC008966.1|lncRNA|chr5:53109841:53110148:+	0	+
#Deleted in new
chr5	53109876	53110148	ENSG00000247796.2|AC008966.1|lncRNA|chr5:53109876:53110148:+	0	+
#Deleted in new
chr5	53109898	53110148	ENSG00000247796.2|AC008966.1|lncRNA|chr5:53109898:53110148:+	0	+
#Deleted in new
chr5	53109984	53110063	ENSG00000164172.18|MOCS2|pc|chr5:53109984:53110063:-	0	-
#Partially deleted in new
chr5	53112239	53113034	ENSG00000247796.2|AC008966.1|lncRNA|chr5:53112239:53113034:+	0	+
#Partially deleted in new
chr5	53112239	53115126	ENSG00000247796.2|AC008966.1|lncRNA|chr5:53112239:53115126:+	0	+
#Partially deleted in new
chr5	53113858	53114197	ENSG00000247796.2|AC008966.1|lncRNA|chr5:53113858:53114197:+	0	+
#Partially deleted in new
chr5	53113858	53115123	ENSG00000247796.2|AC008966.1|lncRNA|chr5:53113858:53115123:+	0	+
#Deleted in new
chr5	53573607	53573731	ENSG00000164258.11|NDUFS4|pc|chr5:53573607:53573731:+	0	+
#Deleted in new
chr5	5420663	5420692	ENSG00000164151.11|ICE1|pc|chr5:5420663:5420692:+	0	+
#Deleted in new
chr5	54320943	54320998	ENSG00000249069.7|LINC01033|lncRNA|chr5:54320943:54320998:+	0	+
#Deleted in new
chr5	54390837	54390933	ENSG00000249069.7|LINC01033|lncRNA|chr5:54390837:54390933:+	0	+
#Deleted in new
chr5	54395350	54395417	ENSG00000249069.7|LINC01033|lncRNA|chr5:54395350:54395417:+	0	+
#Deleted in new
chr5	54408454	54408521	ENSG00000249069.7|LINC01033|lncRNA|chr5:54408454:54408521:+	0	+
#Deleted in new
chr5	54415021	54415099	ENSG00000249069.7|LINC01033|lncRNA|chr5:54415021:54415099:+	0	+
#Deleted in new
chr5	54415021	54415125	ENSG00000249069.7|LINC01033|lncRNA|chr5:54415021:54415125:+	0	+
#Partially deleted in new
chr5	55023928	55024076	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55023928:55024076:-	0	-
#Deleted in new
chr5	55024946	55025041	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55024946:55025041:-	0	-
#Deleted in new
chr5	55024946	55025111	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55024946:55025111:-	0	-
#Deleted in new
chr5	55025675	55025764	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55025675:55025764:-	0	-
#Deleted in new
chr5	55025678	55025764	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55025678:55025764:-	0	-
#Deleted in new
chr5	55026830	55026874	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55026830:55026874:-	0	-
#Deleted in new
chr5	55026830	55026909	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55026830:55026909:-	0	-
#Deleted in new
chr5	55026830	55026924	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55026830:55026924:-	0	-
#Deleted in new
chr5	55026830	55026996	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55026830:55026996:-	0	-
#Deleted in new
chr5	55032471	55032564	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55032471:55032564:-	0	-
#Deleted in new
chr5	55032471	55032566	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55032471:55032566:-	0	-
#Deleted in new
chr5	55032648	55032703	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55032648:55032703:-	0	-
#Deleted in new
chr5	55032648	55032728	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55032648:55032728:-	0	-
#Deleted in new
chr5	55032648	55032729	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55032648:55032729:-	0	-
#Deleted in new
chr5	55036494	55036755	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55036494:55036755:-	0	-
#Deleted in new
chr5	55042628	55042844	ENSG00000240535.8|AC034238.1|lncRNA|chr5:55042628:55042844:-	0	-
#Deleted in new
chr5	55054427	55054781	ENSG00000251376.1|AC034238.3|lncRNA|chr5:55054427:55054781:+	0	+
#Deleted in new
chr5	55065948	55066230	ENSG00000248029.2|AC034238.2|lncRNA|chr5:55065948:55066230:+	0	+
#Partially deleted in new
chr5	55112994	55114318	ENSG00000164287.12|CDC20B|pc|chr5:55112994:55114318:-	0	-
#Deleted in new
chr5	55126353	55126439	ENSG00000164287.12|CDC20B|pc|chr5:55126353:55126439:-	0	-
#Deleted in new
chr5	55135756	55136053	ENSG00000164287.12|CDC20B|pc|chr5:55135756:55136053:-	0	-
#Deleted in new
chr5	55136481	55137636	ENSG00000164287.12|CDC20B|pc|chr5:55136481:55137636:-	0	-
#Deleted in new
chr5	55279532	55279649	ENSG00000251307.1|AC026704.1|lncRNA|chr5:55279532:55279649:+	0	+
#Partially deleted in new
chr5	55283027	55283152	ENSG00000251307.1|AC026704.1|lncRNA|chr5:55283027:55283152:+	0	+
#Deleted in new
chr5	55324467	55324705	ENSG00000039123.15|SKIV2L2|pc|chr5:55324467:55324705:+	0	+
#Deleted in new
chr5	55329355	55329407	ENSG00000039123.15|SKIV2L2|pc|chr5:55329355:55329407:+	0	+
#Deleted in new
chr5	55484402	55485086	ENSG00000279883.1|AC010480.1|lncRNA|chr5:55484402:55485086:+	0	+
#Deleted in new
chr5	55657969	55658038	ENSG00000177058.11|SLC38A9|pc|chr5:55657969:55658038:-	0	-
#Deleted in new
chr5	55694082	55694204	ENSG00000177058.11|SLC38A9|pc|chr5:55694082:55694204:-	0	-
#Deleted in new
chr5	55695991	55697212	ENSG00000177058.11|SLC38A9|pc|chr5:55695991:55697212:-	0	-
#Deleted in new
chr5	55704042	55704140	ENSG00000177058.11|SLC38A9|pc|chr5:55704042:55704140:-	0	-
#Deleted in new
chr5	55704274	55704434	ENSG00000177058.11|SLC38A9|pc|chr5:55704274:55704434:-	0	-
#Deleted in new
chr5	55704321	55704434	ENSG00000177058.11|SLC38A9|pc|chr5:55704321:55704434:-	0	-
#Deleted in new
chr5	55773080	55773194	ENSG00000177058.11|SLC38A9|pc|chr5:55773080:55773194:-	0	-
#Deleted in new
chr5	55852194	55852312	ENSG00000164509.13|IL31RA|pc|chr5:55852194:55852312:+	0	+
#Deleted in new
chr5	55866610	55866754	ENSG00000164509.13|IL31RA|pc|chr5:55866610:55866754:+	0	+
#Partially deleted in new
chr5	55902295	55902460	ENSG00000164509.13|IL31RA|pc|chr5:55902295:55902460:+	0	+
#Deleted in new
chr5	55948897	55948982	ENSG00000134352.19|IL6ST|pc|chr5:55948897:55948982:-	0	-
#Deleted in new
chr5	56001748	56003649	ENSG00000227908.3|FLJ31104|lncRNA|chr5:56001748:56003649:+	0	+
#Partially deleted in new
chr5	56059049	56059096	ENSG00000249236.1|AC008892.1|lncRNA|chr5:56059049:56059096:+	0	+
#Deleted in new
chr5	56067035	56067372	ENSG00000249236.1|AC008892.1|lncRNA|chr5:56067035:56067372:+	0	+
#Deleted in new
chr5	56114202	56114300	ENSG00000164512.17|ANKRD55|pc|chr5:56114202:56114300:-	0	-
#Deleted in new
chr5	56156945	56156995	ENSG00000164512.17|ANKRD55|pc|chr5:56156945:56156995:-	0	-
#Deleted in new
chr5	56321114	56321397	ENSG00000249697.1|AC034245.1|lncRNA|chr5:56321114:56321397:-	0	-
#Deleted in new
chr5	56533081	56533155	ENSG00000225940.5|C5orf67|pc|chr5:56533081:56533155:-	0	-
#Partially deleted in new
chr5	56536582	56536940	ENSG00000234553.1|AC022431.2|lncRNA|chr5:56536582:56536940:-	0	-
#Deleted in new
chr5	56537648	56537826	ENSG00000234553.1|AC022431.2|lncRNA|chr5:56537648:56537826:-	0	-
#Partially deleted in new
chr5	56606021	56606232	ENSG00000225940.5|C5orf67|pc|chr5:56606021:56606232:-	0	-
#Partially deleted in new
chr5	56770798	56771138	ENSG00000228650.2|AC008940.1|lncRNA|chr5:56770798:56771138:+	0	+
#Deleted in new
chr5	56842015	56842213	ENSG00000237705.1|AC008937.2|lncRNA|chr5:56842015:56842213:-	0	-
#Deleted in new
chr5	56862073	56862164	ENSG00000237705.1|AC008937.2|lncRNA|chr5:56862073:56862164:-	0	-
#Deleted in new
chr5	56900040	56900415	ENSG00000225230.1|AC008937.1|lncRNA|chr5:56900040:56900415:-	0	-
#Deleted in new
chr5	56916814	56916919	ENSG00000155542.11|SETD9|pc|chr5:56916814:56916919:+	0	+
#Partially deleted in new
chr5	56916814	56916944	ENSG00000155542.11|SETD9|pc|chr5:56916814:56916944:+	0	+
#Partially deleted in new
chr5	56925332	56925532	ENSG00000155542.11|SETD9|pc|chr5:56925332:56925532:+	0	+
#Partially deleted in new
chr5	56927873	56929573	ENSG00000271828.1|AC008937.3|lncRNA|chr5:56927873:56929573:+	0	+
#Deleted in new
chr5	56936893	56936936	ENSG00000155545.19|MIER3|pc|chr5:56936893:56936936:-	0	-
#Deleted in new
chr5	56940998	56941133	ENSG00000155545.19|MIER3|pc|chr5:56940998:56941133:-	0	-
#Deleted in new
chr5	56959385	56959520	ENSG00000155545.19|MIER3|pc|chr5:56959385:56959520:-	0	-
#Deleted in new
chr5	57221375	57221396	ENSG00000062194.15|GPBP1|pc|chr5:57221375:57221396:+	0	+
#Partially deleted in new
chr5	57532935	57533424	ENSG00000250961.1|AC025470.2|lncRNA|chr5:57532935:57533424:+	0	+
#Deleted in new
chr5	57578835	57578914	ENSG00000248294.1|AC008780.1|lncRNA|chr5:57578835:57578914:+	0	+
#Deleted in new
chr5	57614176	57614341	ENSG00000248294.1|AC008780.1|lncRNA|chr5:57614176:57614341:+	0	+
#Deleted in new
chr5	57614388	57614501	ENSG00000249436.1|AC008780.2|lncRNA|chr5:57614388:57614501:+	0	+
#Deleted in new
chr5	57751191	57751717	ENSG00000249198.1|AC106822.1|lncRNA|chr5:57751191:57751717:-	0	-
#Partially deleted in new
chr5	57890326	57890426	ENSG00000249584.1|LINC02225|lncRNA|chr5:57890326:57890426:-	0	-
#Deleted in new
chr5	57894909	57894995	ENSG00000249584.1|LINC02225|lncRNA|chr5:57894909:57894995:-	0	-
#Partially deleted in new
chr5	57895279	57899162	ENSG00000249584.1|LINC02225|lncRNA|chr5:57895279:57899162:-	0	-
#Deleted in new
chr5	58115838	58115977	ENSG00000248132.2|LINC02101|lncRNA|chr5:58115838:58115977:-	0	-
#Partially deleted in new
chr5	58541566	58542387	ENSG00000250127.1|LINC02108|lncRNA|chr5:58541566:58542387:-	0	-
#Deleted in new
chr5	58546091	58546159	ENSG00000250127.1|LINC02108|lncRNA|chr5:58546091:58546159:-	0	-
#Deleted in new
chr5	58547134	58547371	ENSG00000250127.1|LINC02108|lncRNA|chr5:58547134:58547371:-	0	-
#Deleted in new
chr5	58558185	58558243	ENSG00000250127.1|LINC02108|lncRNA|chr5:58558185:58558243:-	0	-
#Deleted in new
chr5	58644363	58644438	ENSG00000152932.7|RAB3C|pc|chr5:58644363:58644438:+	0	+
#Deleted in new
chr5	58689259	58689330	ENSG00000152932.7|RAB3C|pc|chr5:58689259:58689330:+	0	+
#Deleted in new
chr5	58741580	58742000	ENSG00000248475.5|AC016642.1|lncRNA|chr5:58741580:58742000:-	0	-
#Deleted in new
chr5	58784723	58784779	ENSG00000248475.5|AC016642.1|lncRNA|chr5:58784723:58784779:-	0	-
#Deleted in new
chr5	59164946	59165050	ENSG00000113448.18|PDE4D|pc|chr5:59164946:59165050:-	0	-
#Deleted in new
chr5	59166260	59166434	ENSG00000113448.18|PDE4D|pc|chr5:59166260:59166434:-	0	-
#Deleted in new
chr5	59172801	59172879	ENSG00000113448.18|PDE4D|pc|chr5:59172801:59172879:-	0	-
#Deleted in new
chr5	59558559	59558793	ENSG00000113448.18|PDE4D|pc|chr5:59558559:59558793:-	0	-
#Partially deleted in new
chr5	60021765	60021846	ENSG00000248935.1|AC034234.1|lncRNA|chr5:60021765:60021846:+	0	+
#Deleted in new
chr5	60030847	60030972	ENSG00000248935.1|AC034234.1|lncRNA|chr5:60030847:60030972:+	0	+
#Deleted in new
chr5	60030885	60030980	ENSG00000248935.1|AC034234.1|lncRNA|chr5:60030885:60030980:+	0	+
#Deleted in new
chr5	60147747	60147894	ENSG00000113448.18|PDE4D|pc|chr5:60147747:60147894:-	0	-
#Deleted in new
chr5	602619	602844	ENSG00000249650.1|AC106772.1|lncRNA|chr5:602619:602844:-	0	-
#Deleted in new
chr5	6030034	6030272	ENSG00000259861.1|AC010266.1|lncRNA|chr5:6030034:6030272:+	0	+
#Deleted in new
chr5	6030637	6030841	ENSG00000259861.1|AC010266.1|lncRNA|chr5:6030637:6030841:+	0	+
#Deleted in new
chr5	60533931	60534019	ENSG00000152931.7|PART1|lncRNA|chr5:60533931:60534019:+	0	+
#Partially deleted in new
chr5	60546101	60547657	ENSG00000152931.7|PART1|lncRNA|chr5:60546101:60547657:+	0	+
#Deleted in new
chr5	60799179	60799230	ENSG00000164181.13|ELOVL7|pc|chr5:60799179:60799230:-	0	-
#Deleted in new
chr5	60907279	60907523	ENSG00000049167.13|ERCC8|pc|chr5:60907279:60907523:-	0	-
#Deleted in new
chr5	60917489	60917567	ENSG00000233847.1|AC022445.1|lncRNA|chr5:60917489:60917567:+	0	+
#Deleted in new
chr5	60919376	60919573	ENSG00000233847.1|AC022445.1|lncRNA|chr5:60919376:60919573:+	0	+
#Deleted in new
chr5	60932106	60932148	ENSG00000049167.13|ERCC8|pc|chr5:60932106:60932148:-	0	-
#Deleted in new
chr5	61050375	61050540	ENSG00000164182.10|NDUFAF2|pc|chr5:61050375:61050540:+	0	+
#Deleted in new
chr5	61083242	61083329	ENSG00000164182.10|NDUFAF2|pc|chr5:61083242:61083329:+	0	+
#Partially deleted in new
chr5	61114431	61116753	ENSG00000279985.1|AC008498.2|lncRNA|chr5:61114431:61116753:-	0	-
#Deleted in new
chr5	611446	611753	ENSG00000249650.1|AC106772.1|lncRNA|chr5:611446:611753:-	0	-
#Deleted in new
chr5	612151	612210	ENSG00000249650.1|AC106772.1|lncRNA|chr5:612151:612210:-	0	-
#Deleted in new
chr5	61250556	61250862	ENSG00000249279.5|LINC02057|lncRNA|chr5:61250556:61250862:-	0	-
#Partially deleted in new
chr5	6134302	6137171	ENSG00000278913.1|AC026797.1|lncRNA|chr5:6134302:6137171:+	0	+
#Deleted in new
chr5	61643326	61643400	ENSG00000178722.12|C5orf64|lncRNA|chr5:61643326:61643400:+	0	+
#Deleted in new
chr5	61695982	61696018	ENSG00000248529.5|AC026746.1|lncRNA|chr5:61695982:61696018:-	0	-
#Deleted in new
chr5	61697409	61697639	ENSG00000248529.5|AC026746.1|lncRNA|chr5:61697409:61697639:-	0	-
#Partially deleted in new
chr5	61730045	61730573	ENSG00000178722.12|C5orf64|lncRNA|chr5:61730045:61730573:+	0	+
#Partially deleted in new
chr5	62308308	62308511	ENSG00000068796.16|KIF2A|pc|chr5:62308308:62308511:+	0	+
#Deleted in new
chr5	62391716	62392006	ENSG00000086189.9|DIMT1|pc|chr5:62391716:62392006:-	0	-
#Deleted in new
chr5	62392170	62392234	ENSG00000086189.9|DIMT1|pc|chr5:62392170:62392234:-	0	-
#Deleted in new
chr5	62392177	62392234	ENSG00000086189.9|DIMT1|pc|chr5:62392177:62392234:-	0	-
#Partially deleted in new
chr5	62403971	62404103	ENSG00000086200.16|IPO11|pc|chr5:62403971:62404103:+	0	+
#Deleted in new
chr5	62404049	62404156	ENSG00000086200.16|IPO11|pc|chr5:62404049:62404156:+	0	+
#Deleted in new
chr5	62418883	62419127	ENSG00000086200.16|IPO11|pc|chr5:62418883:62419127:+	0	+
#Deleted in new
chr5	62422504	62422568	ENSG00000086200.16|IPO11|pc|chr5:62422504:62422568:+	0	+
#Deleted in new
chr5	6337149	6337292	ENSG00000250490.1|LINC02145|lncRNA|chr5:6337149:6337292:-	0	-
#Deleted in new
chr5	6337238	6337323	ENSG00000250490.1|LINC02145|lncRNA|chr5:6337238:6337323:-	0	-
#Deleted in new
chr5	6339411	6339884	ENSG00000250490.1|LINC02145|lncRNA|chr5:6339411:6339884:-	0	-
#Partially deleted in new
chr5	6376811	6377249	ENSG00000133398.3|MED10|pc|chr5:6376811:6377249:-	0	-
#Deleted in new
chr5	63980947	63981043	ENSG00000248285.1|AC122707.1|lncRNA|chr5:63980947:63981043:-	0	-
#Deleted in new
chr5	64754622	64754770	ENSG00000153006.15|SREK1IP1|pc|chr5:64754622:64754770:-	0	-
#Deleted in new
chr5	64807598	64808562	ENSG00000153015.15|CWC27|pc|chr5:64807598:64808562:+	0	+
#Deleted in new
chr5	65486892	65487048	ENSG00000250081.1|AC025176.1|lncRNA|chr5:65486892:65487048:-	0	-
#Deleted in new
chr5	65524600	65524677	ENSG00000123219.12|CENPK|pc|chr5:65524600:65524677:-	0	-
#Deleted in new
chr5	65541354	65541436	ENSG00000123219.12|CENPK|pc|chr5:65541354:65541436:-	0	-
#Deleted in new
chr5	655454	655584	ENSG00000112877.7|CEP72|pc|chr5:655454:655584:+	0	+
#Deleted in new
chr5	655455	655584	ENSG00000112877.7|CEP72|pc|chr5:655455:655584:+	0	+
#Deleted in new
chr5	65550466	65551242	ENSG00000123219.12|CENPK|pc|chr5:65550466:65551242:-	0	-
#Deleted in new
chr5	65551105	65551235	ENSG00000123219.12|CENPK|pc|chr5:65551105:65551235:-	0	-
#Deleted in new
chr5	65551105	65551242	ENSG00000123219.12|CENPK|pc|chr5:65551105:65551242:-	0	-
#Deleted in new
chr5	65560969	65561564	ENSG00000123219.12|CENPK|pc|chr5:65560969:65561564:-	0	-
#Deleted in new
chr5	65561115	65561564	ENSG00000123219.12|CENPK|pc|chr5:65561115:65561564:-	0	-
#Deleted in new
chr5	65561462	65561535	ENSG00000123219.12|CENPK|pc|chr5:65561462:65561535:-	0	-
#Deleted in new
chr5	65561462	65561564	ENSG00000123219.12|CENPK|pc|chr5:65561462:65561564:-	0	-
#Deleted in new
chr5	65561496	65561564	ENSG00000123219.12|CENPK|pc|chr5:65561496:65561564:-	0	-
#Deleted in new
chr5	65568917	65568994	ENSG00000113593.11|PPWD1|pc|chr5:65568917:65568994:+	0	+
#Deleted in new
chr5	65606915	65607167	ENSG00000113595.14|TRIM23|pc|chr5:65606915:65607167:-	0	-
#Deleted in new
chr5	656927	657093	ENSG00000112877.7|CEP72|pc|chr5:656927:657093:+	0	+
#Deleted in new
chr5	65740894	65741000	ENSG00000123213.22|NLN|pc|chr5:65740894:65741000:+	0	+
#Partially deleted in new
chr5	65809125	65809409	ENSG00000123213.22|NLN|pc|chr5:65809125:65809409:+	0	+
#Deleted in new
chr5	6582135	6582601	ENSG00000250056.5|LINC01018|lncRNA|chr5:6582135:6582601:+	0	+
#Deleted in new
chr5	6582137	6582266	ENSG00000250056.5|LINC01018|lncRNA|chr5:6582137:6582266:+	0	+
#Deleted in new
chr5	6582145	6582601	ENSG00000250056.5|LINC01018|lncRNA|chr5:6582145:6582601:+	0	+
#Deleted in new
chr5	6582419	6582601	ENSG00000250056.5|LINC01018|lncRNA|chr5:6582419:6582601:+	0	+
#Deleted in new
chr5	6583275	6583801	ENSG00000250056.5|LINC01018|lncRNA|chr5:6583275:6583801:+	0	+
#Deleted in new
chr5	6583602	6583723	ENSG00000250056.5|LINC01018|lncRNA|chr5:6583602:6583723:+	0	+
#Deleted in new
chr5	6583602	6583801	ENSG00000250056.5|LINC01018|lncRNA|chr5:6583602:6583801:+	0	+
#Deleted in new
chr5	6585773	6585898	ENSG00000250056.5|LINC01018|lncRNA|chr5:6585773:6585898:+	0	+
#Deleted in new
chr5	6585773	6586027	ENSG00000250056.5|LINC01018|lncRNA|chr5:6585773:6586027:+	0	+
#Deleted in new
chr5	6586227	6587670	ENSG00000250056.5|LINC01018|lncRNA|chr5:6586227:6587670:+	0	+
#Deleted in new
chr5	6586227	6588499	ENSG00000250056.5|LINC01018|lncRNA|chr5:6586227:6588499:+	0	+
#Deleted in new
chr5	65984754	65984845	ENSG00000112851.14|ERBIN|pc|chr5:65984754:65984845:+	0	+
#Deleted in new
chr5	66139970	66140011	ENSG00000153914.15|SREK1|pc|chr5:66139970:66140011:+	0	+
#Deleted in new
chr5	66206211	66206653	ENSG00000248846.2|LINC02065|lncRNA|chr5:66206211:66206653:-	0	-
#Deleted in new
chr5	6621602	6621744	ENSG00000037474.14|NSUN2|pc|chr5:6621602:6621744:-	0	-
#Deleted in new
chr5	6644807	6645309	ENSG00000145545.11|SRD5A1|pc|chr5:6644807:6645309:+	0	+
#Deleted in new
chr5	66508775	66508947	ENSG00000250313.2|LINC02229|lncRNA|chr5:66508775:66508947:-	0	-
#Deleted in new
chr5	6653446	6653527	ENSG00000145545.11|SRD5A1|pc|chr5:6653446:6653527:+	0	+
#Partially deleted in new
chr5	6668201	6668849	ENSG00000145545.11|SRD5A1|pc|chr5:6668201:6668849:+	0	+
#Partially deleted in new
chr5	6668201	6668972	ENSG00000145545.11|SRD5A1|pc|chr5:6668201:6668972:+	0	+
#Partially deleted in new
chr5	6668201	6674386	ENSG00000145545.11|SRD5A1|pc|chr5:6668201:6674386:+	0	+
#Deleted in new
chr5	666863	667168	ENSG00000112877.7|CEP72|pc|chr5:666863:667168:+	0	+
#Partially deleted in new
chr5	6714788	6714942	ENSG00000112941.13|PAPD7|pc|chr5:6714788:6714942:+	0	+
#Partially deleted in new
chr5	67463808	67463960	ENSG00000250978.5|AC079467.1|lncRNA|chr5:67463808:67463960:-	0	-
#Partially deleted in new
chr5	67465034	67465327	ENSG00000250978.5|AC079467.1|lncRNA|chr5:67465034:67465327:-	0	-
#Deleted in new
chr5	67465253	67465327	ENSG00000250978.5|AC079467.1|lncRNA|chr5:67465253:67465327:-	0	-
#Deleted in new
chr5	67467905	67468053	ENSG00000250978.5|AC079467.1|lncRNA|chr5:67467905:67468053:-	0	-
#Deleted in new
chr5	675825	676616	ENSG00000271781.1|AC026740.1|lncRNA|chr5:675825:676616:+	0	+
#Deleted in new
chr5	67634306	67634395	ENSG00000249736.1|LINC02242|lncRNA|chr5:67634306:67634395:-	0	-
#Deleted in new
chr5	6768274	6768424	ENSG00000251365.1|AC122710.2|lncRNA|chr5:6768274:6768424:+	0	+
#Deleted in new
chr5	67699428	67699725	ENSG00000250421.5|AC106798.1|lncRNA|chr5:67699428:67699725:-	0	-
#Deleted in new
chr5	67699450	67699725	ENSG00000250421.5|AC106798.1|lncRNA|chr5:67699450:67699725:-	0	-
#Deleted in new
chr5	67701490	67701652	ENSG00000250421.5|AC106798.1|lncRNA|chr5:67701490:67701652:-	0	-
#Deleted in new
chr5	6771598	6771953	ENSG00000251365.1|AC122710.2|lncRNA|chr5:6771598:6771953:+	0	+
#Deleted in new
chr5	67790448	67790538	ENSG00000249364.5|AC112206.2|lncRNA|chr5:67790448:67790538:+	0	+
#Deleted in new
chr5	6779457	6779998	ENSG00000272071.1|AC122710.3|lncRNA|chr5:6779457:6779998:+	0	+
#Deleted in new
chr5	67817939	67818048	ENSG00000250421.5|AC106798.1|lncRNA|chr5:67817939:67818048:-	0	-
#Deleted in new
chr5	67818279	67818322	ENSG00000250421.5|AC106798.1|lncRNA|chr5:67818279:67818322:-	0	-
#Deleted in new
chr5	67823973	67824042	ENSG00000250421.5|AC106798.1|lncRNA|chr5:67823973:67824042:-	0	-
#Deleted in new
chr5	67889601	67889719	ENSG00000249894.1|AC024581.1|lncRNA|chr5:67889601:67889719:-	0	-
#Deleted in new
chr5	67889865	67890096	ENSG00000249894.1|AC024581.1|lncRNA|chr5:67889865:67890096:-	0	-
#Deleted in new
chr5	67902543	67902600	ENSG00000250421.5|AC106798.1|lncRNA|chr5:67902543:67902600:-	0	-
#Deleted in new
chr5	68196369	68196489	ENSG00000253787.1|LINC02219|lncRNA|chr5:68196369:68196489:+	0	+
#Deleted in new
chr5	6826642	6826728	ENSG00000249734.1|LINC02236|lncRNA|chr5:6826642:6826728:+	0	+
#Deleted in new
chr5	68531689	68531917	ENSG00000248359.1|AC010280.1|lncRNA|chr5:68531689:68531917:-	0	-
#Deleted in new
chr5	6870742	6870858	ENSG00000250060.1|AC122710.1|lncRNA|chr5:6870742:6870858:+	0	+
#Deleted in new
chr5	6886425	6886787	ENSG00000250060.1|AC122710.1|lncRNA|chr5:6886425:6886787:+	0	+
#Deleted in new
chr5	68960539	68960626	ENSG00000249335.1|AC093523.1|lncRNA|chr5:68960539:68960626:-	0	-
#Deleted in new
chr5	68967666	68967845	ENSG00000250066.1|AC093248.1|lncRNA|chr5:68967666:68967845:+	0	+
#Deleted in new
chr5	68970691	68971077	ENSG00000249352.4|LINC02198|lncRNA|chr5:68970691:68971077:-	0	-
#Deleted in new
chr5	69038517	69038576	ENSG00000250237.1|AC010273.2|lncRNA|chr5:69038517:69038576:-	0	-
#Partially deleted in new
chr5	69102571	69103128	ENSG00000145740.18|SLC30A5|pc|chr5:69102571:69103128:+	0	+
#Partially deleted in new
chr5	69130342	69130545	ENSG00000248664.1|AC010273.1|lncRNA|chr5:69130342:69130545:-	0	-
#Deleted in new
chr5	69134516	69134602	ENSG00000248664.1|AC010273.1|lncRNA|chr5:69134516:69134602:-	0	-
#Deleted in new
chr5	69136150	69136394	ENSG00000248664.1|AC010273.1|lncRNA|chr5:69136150:69136394:-	0	-
#Partially deleted in new
chr5	69186358	69189452	ENSG00000280187.1|AC022107.1|lncRNA|chr5:69186358:69189452:-	0	-
#Partially deleted in new
chr5	69197052	69197499	ENSG00000153044.9|CENPH|pc|chr5:69197052:69197499:+	0	+
#Partially deleted in new
chr5	69209706	69210356	ENSG00000153044.9|CENPH|pc|chr5:69209706:69210356:+	0	+
#Partially deleted in new
chr5	69209706	69210357	ENSG00000153044.9|CENPH|pc|chr5:69209706:69210357:+	0	+
#Deleted in new
chr5	69250744	69250795	ENSG00000134058.11|CDK7|pc|chr5:69250744:69250795:+	0	+
#Deleted in new
chr5	69250744	69250831	ENSG00000134058.11|CDK7|pc|chr5:69250744:69250831:+	0	+
#Partially deleted in new
chr5	69280174	69283034	ENSG00000183323.12|CCDC125|pc|chr5:69280174:69283034:-	0	-
#Partially deleted in new
chr5	69280692	69283034	ENSG00000183323.12|CCDC125|pc|chr5:69280692:69283034:-	0	-
#Partially deleted in new
chr5	69281344	69283034	ENSG00000183323.12|CCDC125|pc|chr5:69281344:69283034:-	0	-
#Partially deleted in new
chr5	69307667	69311204	ENSG00000183323.12|CCDC125|pc|chr5:69307667:69311204:-	0	-
#Deleted in new
chr5	693277	693395	ENSG00000171368.11|TPPP|pc|chr5:693277:693395:-	0	-
#Deleted in new
chr5	6933669	6933738	ENSG00000250974.1|LINC02196|lncRNA|chr5:6933669:6933738:+	0	+
#Deleted in new
chr5	69367838	69367909	ENSG00000273841.4|TAF9|pc|chr5:69367838:69367909:-	0	-
#Deleted in new
chr5	69384079	69384197	ENSG00000152942.18|RAD17|pc|chr5:69384079:69384197:+	0	+
#Partially deleted in new
chr5	69441531	69442056	ENSG00000152939.14|MARVELD2|pc|chr5:69441531:69442056:+	0	+
#Deleted in new
chr5	69443082	69443157	ENSG00000152939.14|MARVELD2|pc|chr5:69443082:69443157:+	0	+
#Deleted in new
chr5	69485482	69485612	ENSG00000249295.1|AC145146.2|lncRNA|chr5:69485482:69485612:-	0	-
#Deleted in new
chr5	69560207	69560242	ENSG00000183474.15|GTF2H2C|pc|chr5:69560207:69560242:+	0	+
#Deleted in new
chr5	69560208	69560242	ENSG00000183474.15|GTF2H2C|pc|chr5:69560208:69560242:+	0	+
#Deleted in new
chr5	69560222	69560242	ENSG00000183474.15|GTF2H2C|pc|chr5:69560222:69560242:+	0	+
#Deleted in new
chr5	69560222	69560403	ENSG00000183474.15|GTF2H2C|pc|chr5:69560222:69560403:+	0	+
#Deleted in new
chr5	69560224	69560242	ENSG00000183474.15|GTF2H2C|pc|chr5:69560224:69560242:+	0	+
#Deleted in new
chr5	69560241	69560403	ENSG00000183474.15|GTF2H2C|pc|chr5:69560241:69560403:+	0	+
#Deleted in new
chr5	69560246	69560403	ENSG00000183474.15|GTF2H2C|pc|chr5:69560246:69560403:+	0	+
#Deleted in new
chr5	69560258	69560601	ENSG00000183474.15|GTF2H2C|pc|chr5:69560258:69560601:+	0	+
#Deleted in new
chr5	69560293	69560403	ENSG00000183474.15|GTF2H2C|pc|chr5:69560293:69560403:+	0	+
#Deleted in new
chr5	69562651	69562770	ENSG00000183474.15|GTF2H2C|pc|chr5:69562651:69562770:+	0	+
#Deleted in new
chr5	69562672	69562770	ENSG00000183474.15|GTF2H2C|pc|chr5:69562672:69562770:+	0	+
#Partially deleted in new
chr5	69568519	69570011	ENSG00000183474.15|GTF2H2C|pc|chr5:69568519:69570011:+	0	+
#Partially deleted in new
chr5	69572444	69572844	ENSG00000183474.15|GTF2H2C|pc|chr5:69572444:69572844:+	0	+
#Partially deleted in new
chr5	69592078	69593767	ENSG00000183474.15|GTF2H2C|pc|chr5:69592078:69593767:+	0	+
#Deleted in new
chr5	69593472	69593705	ENSG00000183474.15|GTF2H2C|pc|chr5:69593472:69593705:+	0	+
#Partially deleted in new
chr5	69594243	69594723	ENSG00000183474.15|GTF2H2C|pc|chr5:69594243:69594723:+	0	+
#Deleted in new
chr5	70025993	70026053	ENSG00000205572.9|SERF1B|pc|chr5:70025993:70026053:+	0	+
#Deleted in new
chr5	70029765	70030122	ENSG00000205572.9|SERF1B|pc|chr5:70029765:70030122:+	0	+
#Deleted in new
chr5	70041523	70041631	ENSG00000205572.9|SERF1B|pc|chr5:70041523:70041631:+	0	+
#Deleted in new
chr5	70041523	70042008	ENSG00000205572.9|SERF1B|pc|chr5:70041523:70042008:+	0	+
#Deleted in new
chr5	70071170	70071182	ENSG00000205571.13|SMN2|pc|chr5:70071170:70071182:+	0	+
#Deleted in new
chr5	70071281	70071332	ENSG00000205571.13|SMN2|pc|chr5:70071281:70071332:+	0	+
#Deleted in new
chr5	70071281	70071390	ENSG00000205571.13|SMN2|pc|chr5:70071281:70071390:+	0	+
#Deleted in new
chr5	70077018	70077160	ENSG00000205571.13|SMN2|pc|chr5:70077018:70077160:+	0	+
#Deleted in new
chr5	70077018	70077251	ENSG00000205571.13|SMN2|pc|chr5:70077018:70077251:+	0	+
#Deleted in new
chr5	70077018	70077592	ENSG00000205571.13|SMN2|pc|chr5:70077018:70077592:+	0	+
#Deleted in new
chr5	70077018	70077596	ENSG00000205571.13|SMN2|pc|chr5:70077018:70077596:+	0	+
#Deleted in new
chr5	70077761	70078522	ENSG00000205571.13|SMN2|pc|chr5:70077761:70078522:+	0	+
#Partially deleted in new
chr5	70449635	70450353	ENSG00000269983.1|AC146944.4|lncRNA|chr5:70449635:70450353:+	0	+
#Deleted in new
chr5	70901411	70901471	ENSG00000172058.15|SERF1A|pc|chr5:70901411:70901471:+	0	+
#Deleted in new
chr5	70905184	70905541	ENSG00000172058.15|SERF1A|pc|chr5:70905184:70905541:+	0	+
#Deleted in new
chr5	70916940	70917048	ENSG00000172058.15|SERF1A|pc|chr5:70916940:70917048:+	0	+
#Deleted in new
chr5	70916940	70917134	ENSG00000172058.15|SERF1A|pc|chr5:70916940:70917134:+	0	+
#Deleted in new
chr5	70916940	70917521	ENSG00000172058.15|SERF1A|pc|chr5:70916940:70917521:+	0	+
#Deleted in new
chr5	70946706	70946757	ENSG00000172062.16|SMN1|pc|chr5:70946706:70946757:+	0	+
#Deleted in new
chr5	70946706	70946815	ENSG00000172062.16|SMN1|pc|chr5:70946706:70946815:+	0	+
#Partially deleted in new
chr5	70951940	70952567	ENSG00000172062.16|SMN1|pc|chr5:70951940:70952567:+	0	+
#Deleted in new
chr5	70952438	70952580	ENSG00000172062.16|SMN1|pc|chr5:70952438:70952580:+	0	+
#Deleted in new
chr5	70952438	70953012	ENSG00000172062.16|SMN1|pc|chr5:70952438:70953012:+	0	+
#Deleted in new
chr5	70952438	70953016	ENSG00000172062.16|SMN1|pc|chr5:70952438:70953016:+	0	+
#Deleted in new
chr5	70952438	70953040	ENSG00000172062.16|SMN1|pc|chr5:70952438:70953040:+	0	+
#Deleted in new
chr5	70953181	70953942	ENSG00000172062.16|SMN1|pc|chr5:70953181:70953942:+	0	+
#Deleted in new
chr5	70971448	70971571	ENSG00000249437.7|NAIP|pc|chr5:70971448:70971571:-	0	-
#Deleted in new
chr5	71020658	71020710	ENSG00000249437.7|NAIP|pc|chr5:71020658:71020710:-	0	-
#Deleted in new
chr5	71020658	71020730	ENSG00000249437.7|NAIP|pc|chr5:71020658:71020730:-	0	-
#Deleted in new
chr5	71020658	71020774	ENSG00000249437.7|NAIP|pc|chr5:71020658:71020774:-	0	-
#Deleted in new
chr5	71020658	71020784	ENSG00000249437.7|NAIP|pc|chr5:71020658:71020784:-	0	-
#Deleted in new
chr5	71020658	71020910	ENSG00000249437.7|NAIP|pc|chr5:71020658:71020910:-	0	-
#Deleted in new
chr5	71024317	71024373	ENSG00000249437.7|NAIP|pc|chr5:71024317:71024373:-	0	-
#Deleted in new
chr5	71024317	71024406	ENSG00000249437.7|NAIP|pc|chr5:71024317:71024406:-	0	-
#Deleted in new
chr5	71024614	71024687	ENSG00000249437.7|NAIP|pc|chr5:71024614:71024687:-	0	-
#Deleted in new
chr5	71024614	71025114	ENSG00000249437.7|NAIP|pc|chr5:71024614:71025114:-	0	-
#Partially deleted in new
chr5	71032669	71035796	ENSG00000145736.14|GTF2H2|pc|chr5:71032669:71035796:-	0	-
#Partially deleted in new
chr5	71033167	71033643	ENSG00000145736.14|GTF2H2|pc|chr5:71033167:71033643:-	0	-
#Deleted in new
chr5	71034169	71034400	ENSG00000145736.14|GTF2H2|pc|chr5:71034169:71034400:-	0	-
#Deleted in new
chr5	71050216	71050305	ENSG00000145736.14|GTF2H2|pc|chr5:71050216:71050305:-	0	-
#Partially deleted in new
chr5	71055029	71055457	ENSG00000145736.14|GTF2H2|pc|chr5:71055029:71055457:-	0	-
#Partially deleted in new
chr5	71057874	71059385	ENSG00000145736.14|GTF2H2|pc|chr5:71057874:71059385:-	0	-
#Deleted in new
chr5	71065124	71065222	ENSG00000145736.14|GTF2H2|pc|chr5:71065124:71065222:-	0	-
#Deleted in new
chr5	71067295	71067638	ENSG00000145736.14|GTF2H2|pc|chr5:71067295:71067638:-	0	-
#Deleted in new
chr5	71067295	71067648	ENSG00000145736.14|GTF2H2|pc|chr5:71067295:71067648:-	0	-
#Deleted in new
chr5	71067493	71067601	ENSG00000145736.14|GTF2H2|pc|chr5:71067493:71067601:-	0	-
#Deleted in new
chr5	71067493	71067650	ENSG00000145736.14|GTF2H2|pc|chr5:71067493:71067650:-	0	-
#Deleted in new
chr5	71067493	71067652	ENSG00000145736.14|GTF2H2|pc|chr5:71067493:71067652:-	0	-
#Deleted in new
chr5	71067493	71067674	ENSG00000145736.14|GTF2H2|pc|chr5:71067493:71067674:-	0	-
#Deleted in new
chr5	71067493	71067676	ENSG00000145736.14|GTF2H2|pc|chr5:71067493:71067676:-	0	-
#Deleted in new
chr5	71067654	71067689	ENSG00000145736.14|GTF2H2|pc|chr5:71067654:71067689:-	0	-
#Partially deleted in new
chr5	711807	712282	ENSG00000206077.10|ZDHHC11B|pc|chr5:711807:712282:-	0	-
#Partially deleted in new
chr5	71351854	71353923	ENSG00000250387.2|LINC02197|lncRNA|chr5:71351854:71353923:-	0	-
#Deleted in new
chr5	71353486	71353923	ENSG00000250387.2|LINC02197|lncRNA|chr5:71353486:71353923:-	0	-
#Deleted in new
chr5	7148767	7148814	ENSG00000250974.1|LINC02196|lncRNA|chr5:7148767:7148814:+	0	+
#Partially deleted in new
chr5	71494464	71495408	ENSG00000145734.18|BDP1|pc|chr5:71494464:71495408:+	0	+
#Deleted in new
chr5	7150803	7151028	ENSG00000250974.1|LINC02196|lncRNA|chr5:7150803:7151028:+	0	+
#Deleted in new
chr5	716800	716865	ENSG00000206077.10|ZDHHC11B|pc|chr5:716800:716865:-	0	-
#Deleted in new
chr5	716807	716865	ENSG00000206077.10|ZDHHC11B|pc|chr5:716807:716865:-	0	-
#Deleted in new
chr5	72193277	72193328	ENSG00000131711.14|MAP1B|pc|chr5:72193277:72193328:+	0	+
#Deleted in new
chr5	72241646	72241688	ENSG00000113048.16|MRPS27|pc|chr5:72241646:72241688:-	0	-
#Deleted in new
chr5	72294553	72294788	ENSG00000113048.16|MRPS27|pc|chr5:72294553:72294788:-	0	-
#Deleted in new
chr5	72307898	72307962	ENSG00000113048.16|MRPS27|pc|chr5:72307898:72307962:-	0	-
#Deleted in new
chr5	72580811	72580977	ENSG00000248371.5|LINC02056|lncRNA|chr5:72580811:72580977:-	0	-
#Deleted in new
chr5	72660566	72660669	ENSG00000248371.5|LINC02056|lncRNA|chr5:72660566:72660669:-	0	-
#Deleted in new
chr5	72762609	72762727	ENSG00000251613.3|AC063979.2|lncRNA|chr5:72762609:72762727:-	0	-
#Deleted in new
chr5	72794404	72794484	ENSG00000249085.1|AC035140.1|lncRNA|chr5:72794404:72794484:-	0	-
#Deleted in new
chr5	72825734	72825821	ENSG00000083312.17|TNPO1|pc|chr5:72825734:72825821:+	0	+
#Deleted in new
chr5	72862353	72862396	ENSG00000083312.17|TNPO1|pc|chr5:72862353:72862396:+	0	+
#Deleted in new
chr5	72871746	72871889	ENSG00000083312.17|TNPO1|pc|chr5:72871746:72871889:+	0	+
#Deleted in new
chr5	73037776	73038123	ENSG00000157107.13|FCHO2|pc|chr5:73037776:73038123:+	0	+
#Deleted in new
chr5	730433	730468	ENSG00000206077.10|ZDHHC11B|pc|chr5:730433:730468:-	0	-
#Deleted in new
chr5	731961	732671	ENSG00000206077.10|ZDHHC11B|pc|chr5:731961:732671:-	0	-
#Deleted in new
chr5	73244710	73244820	ENSG00000249743.5|AC116345.1|lncRNA|chr5:73244710:73244820:+	0	+
#Deleted in new
chr5	7326063	7326189	ENSG00000251250.1|AC091951.4|lncRNA|chr5:7326063:7326189:+	0	+
#Deleted in new
chr5	7326403	7326609	ENSG00000251250.1|AC091951.4|lncRNA|chr5:7326403:7326609:+	0	+
#Deleted in new
chr5	73286486	73286599	ENSG00000249743.5|AC116345.1|lncRNA|chr5:73286486:73286599:+	0	+
#Deleted in new
chr5	73287613	73287682	ENSG00000249743.5|AC116345.1|lncRNA|chr5:73287613:73287682:+	0	+
#Deleted in new
chr5	73287616	73287682	ENSG00000249743.5|AC116345.1|lncRNA|chr5:73287616:73287682:+	0	+
#Deleted in new
chr5	733751	733839	ENSG00000206077.10|ZDHHC11B|pc|chr5:733751:733839:-	0	-
#Deleted in new
chr5	7344578	7344853	ENSG00000251678.1|AC027343.3|lncRNA|chr5:7344578:7344853:+	0	+
#Deleted in new
chr5	73461532	73461625	ENSG00000251324.1|LINC01386|lncRNA|chr5:73461532:73461625:-	0	-
#Deleted in new
chr5	73471884	73471947	ENSG00000251324.1|LINC01386|lncRNA|chr5:73471884:73471947:-	0	-
#Deleted in new
chr5	7347875	7347977	ENSG00000250668.1|LINC02123|lncRNA|chr5:7347875:7347977:-	0	-
#Deleted in new
chr5	7364343	7364531	ENSG00000249638.1|AC027343.1|lncRNA|chr5:7364343:7364531:-	0	-
#Deleted in new
chr5	7367928	7367996	ENSG00000249865.1|AC027343.2|lncRNA|chr5:7367928:7367996:-	0	-
#Deleted in new
chr5	7369432	7369505	ENSG00000249865.1|AC027343.2|lncRNA|chr5:7369432:7369505:-	0	-
#Deleted in new
chr5	7372872	7373074	ENSG00000249865.1|AC027343.2|lncRNA|chr5:7372872:7373074:-	0	-
#Partially deleted in new
chr5	7373116	7373515	ENSG00000223597.2|LINC02142|lncRNA|chr5:7373116:7373515:+	0	+
#Deleted in new
chr5	7379612	7379790	ENSG00000223597.2|LINC02142|lncRNA|chr5:7379612:7379790:+	0	+
#Deleted in new
chr5	73835084	73835256	ENSG00000214944.9|ARHGEF28|pc|chr5:73835084:73835256:+	0	+
#Deleted in new
chr5	73863042	73863357	ENSG00000214944.9|ARHGEF28|pc|chr5:73863042:73863357:+	0	+
#Deleted in new
chr5	74102739	74103216	ENSG00000248474.1|LINC02122|lncRNA|chr5:74102739:74103216:-	0	-
#Deleted in new
chr5	74306409	74306517	ENSG00000248942.1|LINC01335|lncRNA|chr5:74306409:74306517:-	0	-
#Deleted in new
chr5	74307138	74307214	ENSG00000248942.1|LINC01335|lncRNA|chr5:74307138:74307214:-	0	-
#Deleted in new
chr5	74339983	74340152	ENSG00000251041.1|AC106732.1|lncRNA|chr5:74339983:74340152:+	0	+
#Deleted in new
chr5	745182	745298	ENSG00000206077.10|ZDHHC11B|pc|chr5:745182:745298:-	0	-
#Partially deleted in new
chr5	74719988	74720518	ENSG00000049860.13|HEXB|pc|chr5:74719988:74720518:+	0	+
#Partially deleted in new
chr5	747351	748154	ENSG00000206077.10|ZDHHC11B|pc|chr5:747351:748154:-	0	-
#Deleted in new
chr5	74765034	74765152	ENSG00000164347.17|GFM2|pc|chr5:74765034:74765152:-	0	-
#Deleted in new
chr5	74771476	74771653	ENSG00000164346.9|NSA2|pc|chr5:74771476:74771653:+	0	+
#Deleted in new
chr5	74917725	74917978	ENSG00000249856.1|AC116337.3|lncRNA|chr5:74917725:74917978:-	0	-
#Deleted in new
chr5	74919028	74919286	ENSG00000249856.1|AC116337.3|lncRNA|chr5:74919028:74919286:-	0	-
#Deleted in new
chr5	74987500	74987623	ENSG00000249856.1|AC116337.3|lncRNA|chr5:74987500:74987623:-	0	-
#Deleted in new
chr5	75017428	75017542	ENSG00000249856.1|AC116337.3|lncRNA|chr5:75017428:75017542:-	0	-
#Partially deleted in new
chr5	75047718	75048037	ENSG00000250889.2|LINC01336|lncRNA|chr5:75047718:75048037:-	0	-
#Deleted in new
chr5	7522355	7522622	ENSG00000078295.16|ADCY2|pc|chr5:7522355:7522622:+	0	+
#Deleted in new
chr5	75334946	75335038	ENSG00000247372.2|AC008897.2|lncRNA|chr5:75334946:75335038:-	0	-
#Deleted in new
chr5	75339531	75339721	ENSG00000113161.15|HMGCR|pc|chr5:75339531:75339721:+	0	+
#Partially deleted in new
chr5	75363759	75364242	ENSG00000271815.1|AC008897.3|lncRNA|chr5:75363759:75364242:+	0	+
#Deleted in new
chr5	75368485	75368658	ENSG00000113163.15|COL4A3BP|pc|chr5:75368485:75368658:-	0	-
#Deleted in new
chr5	75534827	75534964	ENSG00000122008.15|POLK|pc|chr5:75534827:75534964:+	0	+
#Deleted in new
chr5	75696044	75696111	ENSG00000152359.14|POC5|pc|chr5:75696044:75696111:-	0	-
#Deleted in new
chr5	76286706	76286803	ENSG00000250348.1|AC113404.1|lncRNA|chr5:76286706:76286803:-	0	-
#Deleted in new
chr5	76311183	76311462	ENSG00000250348.1|AC113404.1|lncRNA|chr5:76311183:76311462:-	0	-
#Deleted in new
chr5	76353129	76353939	ENSG00000122012.13|SV2C|pc|chr5:76353129:76353939:+	0	+
#Deleted in new
chr5	76660027	76660325	ENSG00000145703.15|IQGAP2|pc|chr5:76660027:76660325:+	0	+
#Deleted in new
chr5	76699355	76699496	ENSG00000225407.3|AC025188.1|lncRNA|chr5:76699355:76699496:-	0	-
#Deleted in new
chr5	76850000	76850155	ENSG00000171643.13|S100Z|pc|chr5:76850000:76850155:+	0	+
#Deleted in new
chr5	76850098	76850155	ENSG00000171643.13|S100Z|pc|chr5:76850098:76850155:+	0	+
#Deleted in new
chr5	76870165	76870284	ENSG00000171643.13|S100Z|pc|chr5:76870165:76870284:+	0	+
#Deleted in new
chr5	76976364	76976520	ENSG00000145708.10|CRHBP|pc|chr5:76976364:76976520:+	0	+
#Deleted in new
chr5	77029250	77029477	ENSG00000164252.12|AGGF1|pc|chr5:77029250:77029477:+	0	+
#Deleted in new
chr5	77073880	77074237	ENSG00000250615.1|AC008581.1|lncRNA|chr5:77073880:77074237:+	0	+
#Deleted in new
chr5	77074492	77074520	ENSG00000250615.1|AC008581.1|lncRNA|chr5:77074492:77074520:+	0	+
#Deleted in new
chr5	77088058	77088472	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77088058:77088472:+	0	+
#Deleted in new
chr5	77088079	77088472	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77088079:77088472:+	0	+
#Deleted in new
chr5	77088274	77088472	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77088274:77088472:+	0	+
#Deleted in new
chr5	77088376	77088472	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77088376:77088472:+	0	+
#Deleted in new
chr5	77089345	77089403	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77089345:77089403:+	0	+
#Deleted in new
chr5	77092491	77092533	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77092491:77092533:+	0	+
#Deleted in new
chr5	77098654	77098747	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77098654:77098747:+	0	+
#Deleted in new
chr5	77104524	77105392	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77104524:77105392:+	0	+
#Deleted in new
chr5	77105655	77105689	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77105655:77105689:+	0	+
#Deleted in new
chr5	77105655	77105808	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77105655:77105808:+	0	+
#Deleted in new
chr5	77118319	77118375	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77118319:77118375:+	0	+
#Deleted in new
chr5	77118319	77118521	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77118319:77118521:+	0	+
#Deleted in new
chr5	77118321	77118521	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77118321:77118521:+	0	+
#Deleted in new
chr5	77131090	77131207	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77131090:77131207:+	0	+
#Deleted in new
chr5	77134304	77134585	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77134304:77134585:+	0	+
#Duplicated in new
chr5	77146116	77147162	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77146116:77147162:+	0	+
#Partially deleted in new
chr5	77147651	77148110	ENSG00000250802.6|ZBED3-AS1|lncRNA|chr5:77147651:77148110:+	0	+
#Deleted in new
chr5	77246728	77246847	ENSG00000113231.13|PDE8B|pc|chr5:77246728:77246847:+	0	+
#Partially deleted in new
chr5	77425969	77426191	ENSG00000164253.13|WDR41|pc|chr5:77425969:77426191:-	0	-
#Partially deleted in new
chr5	77451290	77452873	ENSG00000164253.13|WDR41|pc|chr5:77451290:77452873:-	0	-
#Deleted in new
chr5	77480080	77480189	ENSG00000164253.13|WDR41|pc|chr5:77480080:77480189:-	0	-
#Deleted in new
chr5	77491192	77491285	ENSG00000164253.13|WDR41|pc|chr5:77491192:77491285:-	0	-
#Deleted in new
chr5	77491811	77492003	ENSG00000164253.13|WDR41|pc|chr5:77491811:77492003:-	0	-
#Deleted in new
chr5	77499326	77499636	ENSG00000164253.13|WDR41|pc|chr5:77499326:77499636:-	0	-
#Deleted in new
chr5	77540457	77540536	ENSG00000164253.13|WDR41|pc|chr5:77540457:77540536:-	0	-
#Deleted in new
chr5	77705565	77705634	ENSG00000171530.13|TBCA|pc|chr5:77705565:77705634:-	0	-
#Deleted in new
chr5	77942756	77942835	ENSG00000253572.2|AC108482.1|lncRNA|chr5:77942756:77942835:-	0	-
#Deleted in new
chr5	78087495	78087667	ENSG00000132842.13|AP3B1|pc|chr5:78087495:78087667:-	0	-
#Deleted in new
chr5	78121721	78121873	ENSG00000132842.13|AP3B1|pc|chr5:78121721:78121873:-	0	-
#Deleted in new
chr5	78370619	78370805	ENSG00000085365.17|SCAMP1|pc|chr5:78370619:78370805:+	0	+
#Deleted in new
chr5	78457792	78457951	ENSG00000085365.17|SCAMP1|pc|chr5:78457792:78457951:+	0	+
#Deleted in new
chr5	78491078	78491306	ENSG00000145685.13|LHFPL2|pc|chr5:78491078:78491306:-	0	-
#Deleted in new
chr5	78549025	78549151	ENSG00000145685.13|LHFPL2|pc|chr5:78549025:78549151:-	0	-
#Deleted in new
chr5	7856786	7856892	ENSG00000124275.14|MTRR|pc|chr5:7856786:7856892:+	0	+
#Deleted in new
chr5	78632259	78632368	ENSG00000145685.13|LHFPL2|pc|chr5:78632259:78632368:-	0	-
#Deleted in new
chr5	78632263	78632368	ENSG00000145685.13|LHFPL2|pc|chr5:78632263:78632368:-	0	-
#Deleted in new
chr5	7868978	7869002	ENSG00000124279.11|FASTKD3|pc|chr5:7868978:7869002:-	0	-
#Deleted in new
chr5	7868978	7869010	ENSG00000124279.11|FASTKD3|pc|chr5:7868978:7869010:-	0	-
#Deleted in new
chr5	7868978	7869026	ENSG00000124279.11|FASTKD3|pc|chr5:7868978:7869026:-	0	-
#Deleted in new
chr5	7868978	7869032	ENSG00000124279.11|FASTKD3|pc|chr5:7868978:7869032:-	0	-
#Deleted in new
chr5	7868978	7869037	ENSG00000124279.11|FASTKD3|pc|chr5:7868978:7869037:-	0	-
#Deleted in new
chr5	7869103	7869189	ENSG00000124275.14|MTRR|pc|chr5:7869103:7869189:+	0	+
#Deleted in new
chr5	7869103	7869215	ENSG00000124275.14|MTRR|pc|chr5:7869103:7869215:+	0	+
#Deleted in new
chr5	7869147	7869189	ENSG00000124275.14|MTRR|pc|chr5:7869147:7869189:+	0	+
#Deleted in new
chr5	7869147	7869215	ENSG00000124275.14|MTRR|pc|chr5:7869147:7869215:+	0	+
#Deleted in new
chr5	7869183	7869215	ENSG00000124275.14|MTRR|pc|chr5:7869183:7869215:+	0	+
#Deleted in new
chr5	7869188	7869215	ENSG00000124275.14|MTRR|pc|chr5:7869188:7869215:+	0	+
#Deleted in new
chr5	7869193	7869215	ENSG00000124275.14|MTRR|pc|chr5:7869193:7869215:+	0	+
#Deleted in new
chr5	7869226	7869298	ENSG00000124275.14|MTRR|pc|chr5:7869226:7869298:+	0	+
#Deleted in new
chr5	7869238	7869718	ENSG00000124275.14|MTRR|pc|chr5:7869238:7869718:+	0	+
#Deleted in new
chr5	7872229	7872305	ENSG00000124275.14|MTRR|pc|chr5:7872229:7872305:+	0	+
#Deleted in new
chr5	78766757	78766864	ENSG00000145685.13|LHFPL2|pc|chr5:78766757:78766864:-	0	-
#Deleted in new
chr5	78767841	78768052	ENSG00000145685.13|LHFPL2|pc|chr5:78767841:78768052:-	0	-
#Deleted in new
chr5	78769938	78770021	ENSG00000145685.13|LHFPL2|pc|chr5:78769938:78770021:-	0	-
#Partially deleted in new
chr5	78816054	78816114	ENSG00000113273.15|ARSB|pc|chr5:78816054:78816114:-	0	-
#Deleted in new
chr5	7885115	7885258	ENSG00000124275.14|MTRR|pc|chr5:7885115:7885258:+	0	+
#Deleted in new
chr5	78884293	78885128	ENSG00000113273.15|ARSB|pc|chr5:78884293:78885128:-	0	-
#Deleted in new
chr5	7893506	7893650	ENSG00000124275.14|MTRR|pc|chr5:7893506:7893650:+	0	+
#Deleted in new
chr5	79030520	79030608	ENSG00000132837.14|DMGDH|pc|chr5:79030520:79030608:-	0	-
#Deleted in new
chr5	7904048	7904162	ENSG00000124275.14|MTRR|pc|chr5:7904048:7904162:+	0	+
#Deleted in new
chr5	7905746	7906025	ENSG00000124275.14|MTRR|pc|chr5:7905746:7906025:+	0	+
#Deleted in new
chr5	79071092	79071215	ENSG00000132840.9|BHMT2|pc|chr5:79071092:79071215:+	0	+
#Deleted in new
chr5	79104163	79104278	ENSG00000132837.14|DMGDH|pc|chr5:79104163:79104278:-	0	-
#Deleted in new
chr5	79222145	79222381	ENSG00000132837.14|DMGDH|pc|chr5:79222145:79222381:-	0	-
#Deleted in new
chr5	79223807	79223926	ENSG00000132837.14|DMGDH|pc|chr5:79223807:79223926:-	0	-
#Deleted in new
chr5	7924291	7924378	ENSG00000251168.1|AC025174.1|lncRNA|chr5:7924291:7924378:+	0	+
#Partially deleted in new
chr5	7925234	7925398	ENSG00000251168.1|AC025174.1|lncRNA|chr5:7925234:7925398:+	0	+
#Partially deleted in new
chr5	795606	795845	ENSG00000188818.12|ZDHHC11|pc|chr5:795606:795845:-	0	-
#Deleted in new
chr5	79612119	79612174	ENSG00000164329.13|PAPD4|pc|chr5:79612119:79612174:+	0	+
#Deleted in new
chr5	79617529	79617599	ENSG00000164329.13|PAPD4|pc|chr5:79617529:79617599:+	0	+
#Deleted in new
chr5	796201	796580	ENSG00000188818.12|ZDHHC11|pc|chr5:796201:796580:-	0	-
#Deleted in new
chr5	79620566	79620617	ENSG00000164329.13|PAPD4|pc|chr5:79620566:79620617:+	0	+
#Deleted in new
chr5	796324	796580	ENSG00000188818.12|ZDHHC11|pc|chr5:796324:796580:-	0	-
#Deleted in new
chr5	79777994	79778118	ENSG00000250258.1|AC008496.2|lncRNA|chr5:79777994:79778118:-	0	-
#Deleted in new
chr5	79801604	79801714	ENSG00000250258.1|AC008496.2|lncRNA|chr5:79801604:79801714:-	0	-
#Deleted in new
chr5	79803837	79803891	ENSG00000250258.1|AC008496.2|lncRNA|chr5:79803837:79803891:-	0	-
#Deleted in new
chr5	79816119	79816190	ENSG00000250258.1|AC008496.2|lncRNA|chr5:79816119:79816190:-	0	-
#Deleted in new
chr5	79998331	79998375	ENSG00000113296.14|THBS4|pc|chr5:79998331:79998375:+	0	+
#Deleted in new
chr5	79998331	79998427	ENSG00000113296.14|THBS4|pc|chr5:79998331:79998427:+	0	+
#Deleted in new
chr5	80036022	80036177	ENSG00000113296.14|THBS4|pc|chr5:80036022:80036177:+	0	+
#Deleted in new
chr5	80080102	80080224	ENSG00000249825.5|CTD-2201I18.1|lncRNA|chr5:80080102:80080224:-	0	-
#Deleted in new
chr5	801099	801145	ENSG00000188818.12|ZDHHC11|pc|chr5:801099:801145:-	0	-
#Deleted in new
chr5	801099	801164	ENSG00000188818.12|ZDHHC11|pc|chr5:801099:801164:-	0	-
#Deleted in new
chr5	80111650	80111702	ENSG00000164300.16|SERINC5|pc|chr5:80111650:80111702:-	0	-
#Deleted in new
chr5	80113571	80113625	ENSG00000164300.16|SERINC5|pc|chr5:80113571:80113625:-	0	-
#Deleted in new
chr5	80114513	80114651	ENSG00000164300.16|SERINC5|pc|chr5:80114513:80114651:-	0	-
#Partially deleted in new
chr5	80128922	80129197	ENSG00000251675.1|AC010260.1|lncRNA|chr5:80128922:80129197:+	0	+
#Partially deleted in new
chr5	80319624	80319701	ENSG00000164299.6|SPZ1|pc|chr5:80319624:80319701:+	0	+
#Deleted in new
chr5	80409691	80410340	ENSG00000039319.16|ZFYVE16|pc|chr5:80409691:80410340:+	0	+
#Deleted in new
chr5	80427491	80427545	ENSG00000039319.16|ZFYVE16|pc|chr5:80427491:80427545:+	0	+
#Deleted in new
chr5	80435761	80435854	ENSG00000039319.16|ZFYVE16|pc|chr5:80435761:80435854:+	0	+
#Deleted in new
chr5	80482292	80483166	ENSG00000249042.5|AC008771.1|lncRNA|chr5:80482292:80483166:-	0	-
#Deleted in new
chr5	80482711	80483166	ENSG00000249042.5|AC008771.1|lncRNA|chr5:80482711:80483166:-	0	-
#Deleted in new
chr5	80485465	80485561	ENSG00000249042.5|AC008771.1|lncRNA|chr5:80485465:80485561:-	0	-
#Deleted in new
chr5	80487772	80487953	ENSG00000249042.5|AC008771.1|lncRNA|chr5:80487772:80487953:-	0	-
#Deleted in new
chr5	80487777	80488063	ENSG00000249042.5|AC008771.1|lncRNA|chr5:80487777:80488063:-	0	-
#Deleted in new
chr5	80495052	80495283	ENSG00000152380.9|FAM151B|pc|chr5:80495052:80495283:+	0	+
#Deleted in new
chr5	80499884	80499985	ENSG00000152380.9|FAM151B|pc|chr5:80499884:80499985:+	0	+
#Deleted in new
chr5	80505942	80506076	ENSG00000152380.9|FAM151B|pc|chr5:80505942:80506076:+	0	+
#Deleted in new
chr5	80510713	80511086	ENSG00000152380.9|FAM151B|pc|chr5:80510713:80511086:+	0	+
#Deleted in new
chr5	80510739	80510807	ENSG00000152380.9|FAM151B|pc|chr5:80510739:80510807:+	0	+
#Deleted in new
chr5	80518763	80518930	ENSG00000152380.9|FAM151B|pc|chr5:80518763:80518930:+	0	+
#Partially deleted in new
chr5	80522002	80522524	ENSG00000152380.9|FAM151B|pc|chr5:80522002:80522524:+	0	+
#Deleted in new
chr5	80608622	80608945	ENSG00000251221.1|LINC01337|lncRNA|chr5:80608622:80608945:-	0	-
#Partially deleted in new
chr5	80626227	80629165	ENSG00000228716.6|DHFR|pc|chr5:80626227:80629165:-	0	-
#Deleted in new
chr5	80628016	80628938	ENSG00000228716.6|DHFR|pc|chr5:80628016:80628938:-	0	-
#Partially deleted in new
chr5	80628123	80629165	ENSG00000228716.6|DHFR|pc|chr5:80628123:80629165:-	0	-
#Partially deleted in new
chr5	80628222	80629165	ENSG00000228716.6|DHFR|pc|chr5:80628222:80629165:-	0	-
#Partially deleted in new
chr5	80628537	80629165	ENSG00000228716.6|DHFR|pc|chr5:80628537:80629165:-	0	-
#Deleted in new
chr5	80630312	80630472	ENSG00000249655.1|AC008434.1|lncRNA|chr5:80630312:80630472:-	0	-
#Deleted in new
chr5	80715204	80715393	ENSG00000113318.9|MSH3|pc|chr5:80715204:80715393:+	0	+
#Deleted in new
chr5	8080185	8080761	ENSG00000280338.1|AC091941.1|lncRNA|chr5:8080185:8080761:-	0	-
#Deleted in new
chr5	80947696	80947994	ENSG00000251450.1|RASGRF2-AS1|lncRNA|chr5:80947696:80947994:-	0	-
#Deleted in new
chr5	80948328	80948404	ENSG00000251450.1|RASGRF2-AS1|lncRNA|chr5:80948328:80948404:-	0	-
#Deleted in new
chr5	80951128	80951480	ENSG00000251450.1|RASGRF2-AS1|lncRNA|chr5:80951128:80951480:-	0	-
#Deleted in new
chr5	80951446	80951480	ENSG00000251450.1|RASGRF2-AS1|lncRNA|chr5:80951446:80951480:-	0	-
#Deleted in new
chr5	81114811	81114852	ENSG00000249772.1|AC026427.1|lncRNA|chr5:81114811:81114852:-	0	-
#Deleted in new
chr5	81210100	81210180	ENSG00000247572.7|CKMT2-AS1|lncRNA|chr5:81210100:81210180:-	0	-
#Deleted in new
chr5	81216963	81216994	ENSG00000113319.12|RASGRF2|pc|chr5:81216963:81216994:+	0	+
#Deleted in new
chr5	81223314	81223475	ENSG00000247572.7|CKMT2-AS1|lncRNA|chr5:81223314:81223475:-	0	-
#Partially deleted in new
chr5	81237564	81239360	ENSG00000247572.7|CKMT2-AS1|lncRNA|chr5:81237564:81239360:-	0	-
#Partially deleted in new
chr5	81237827	81239355	ENSG00000247572.7|CKMT2-AS1|lncRNA|chr5:81237827:81239355:-	0	-
#Deleted in new
chr5	81244743	81245409	ENSG00000247572.7|CKMT2-AS1|lncRNA|chr5:81244743:81245409:-	0	-
#Deleted in new
chr5	81244857	81245409	ENSG00000247572.7|CKMT2-AS1|lncRNA|chr5:81244857:81245409:-	0	-
#Deleted in new
chr5	81246889	81246972	ENSG00000247572.7|CKMT2-AS1|lncRNA|chr5:81246889:81246972:-	0	-
#Deleted in new
chr5	8143617	8143784	ENSG00000280251.1|AC091912.2|lncRNA|chr5:8143617:8143784:+	0	+
#Deleted in new
chr5	814760	814795	ENSG00000188818.12|ZDHHC11|pc|chr5:814760:814795:-	0	-
#Deleted in new
chr5	81616084	81616585	ENSG00000145687.16|SSBP2|pc|chr5:81616084:81616585:-	0	-
#Deleted in new
chr5	81616348	81616473	ENSG00000145687.16|SSBP2|pc|chr5:81616348:81616473:-	0	-
#Deleted in new
chr5	819524	819612	ENSG00000188818.12|ZDHHC11|pc|chr5:819524:819612:-	0	-
#Partially deleted in new
chr5	81976192	81976327	ENSG00000152348.15|ATG10|pc|chr5:81976192:81976327:+	0	+
#Deleted in new
chr5	81991994	81992481	ENSG00000236447.2|ATG10-IT1|lncRNA|chr5:81991994:81992481:+	0	+
#Deleted in new
chr5	821142	821360	ENSG00000188818.12|ZDHHC11|pc|chr5:821142:821360:-	0	-
#Deleted in new
chr5	82147189	82147504	ENSG00000152348.15|ATG10|pc|chr5:82147189:82147504:+	0	+
#Deleted in new
chr5	82147189	82148117	ENSG00000152348.15|ATG10|pc|chr5:82147189:82148117:+	0	+
#Deleted in new
chr5	821860	821895	ENSG00000188818.12|ZDHHC11|pc|chr5:821860:821895:-	0	-
#Partially deleted in new
chr5	82273357	82276255	ENSG00000186468.12|RPS23|pc|chr5:82273357:82276255:-	0	-
#Deleted in new
chr5	82274523	82275113	ENSG00000186468.12|RPS23|pc|chr5:82274523:82275113:-	0	-
#Deleted in new
chr5	82275208	82275295	ENSG00000186468.12|RPS23|pc|chr5:82275208:82275295:-	0	-
#Deleted in new
chr5	82275243	82275295	ENSG00000186468.12|RPS23|pc|chr5:82275243:82275295:-	0	-
#Partially deleted in new
chr5	82275420	82276134	ENSG00000186468.12|RPS23|pc|chr5:82275420:82276134:-	0	-
#Deleted in new
chr5	82279461	82279878	ENSG00000205464.11|ATP6AP1L|pc|chr5:82279461:82279878:+	0	+
#Deleted in new
chr5	82280959	82281011	ENSG00000205464.11|ATP6AP1L|pc|chr5:82280959:82281011:+	0	+
#Partially deleted in new
chr5	82304933	82305481	ENSG00000205464.11|ATP6AP1L|pc|chr5:82304933:82305481:+	0	+
#Partially deleted in new
chr5	82305346	82305481	ENSG00000205464.11|ATP6AP1L|pc|chr5:82305346:82305481:+	0	+
#Deleted in new
chr5	823388	823809	ENSG00000188818.12|ZDHHC11|pc|chr5:823388:823809:-	0	-
#Deleted in new
chr5	823388	824093	ENSG00000188818.12|ZDHHC11|pc|chr5:823388:824093:-	0	-
#Partially deleted in new
chr5	82341698	82341790	ENSG00000205464.11|ATP6AP1L|pc|chr5:82341698:82341790:+	0	+
#Partially deleted in new
chr5	82344327	82344465	ENSG00000205464.11|ATP6AP1L|pc|chr5:82344327:82344465:+	0	+
#Deleted in new
chr5	82382944	82384463	ENSG00000205464.11|ATP6AP1L|pc|chr5:82382944:82384463:+	0	+
#Deleted in new
chr5	82384394	82384463	ENSG00000205464.11|ATP6AP1L|pc|chr5:82384394:82384463:+	0	+
#Deleted in new
chr5	824007	824093	ENSG00000188818.12|ZDHHC11|pc|chr5:824007:824093:-	0	-
#Deleted in new
chr5	825163	825251	ENSG00000188818.12|ZDHHC11|pc|chr5:825163:825251:-	0	-
#Deleted in new
chr5	82545861	82546310	ENSG00000248393.1|AC026782.1|lncRNA|chr5:82545861:82546310:-	0	-
#Partially deleted in new
chr5	82850863	82851166	ENSG00000281327.1|LINC01338|lncRNA|chr5:82850863:82851166:-	0	-
#Deleted in new
chr5	82920961	82921119	ENSG00000248112.1|AC108174.1|lncRNA|chr5:82920961:82921119:-	0	-
#Deleted in new
chr5	82940457	82940983	ENSG00000249857.1|AC027338.2|lncRNA|chr5:82940457:82940983:-	0	-
#Deleted in new
chr5	8333480	8334452	ENSG00000245729.2|LINC02226|lncRNA|chr5:8333480:8334452:-	0	-
#Deleted in new
chr5	8334577	8334726	ENSG00000245729.2|LINC02226|lncRNA|chr5:8334577:8334726:-	0	-
#Deleted in new
chr5	8337180	8337295	ENSG00000245729.2|LINC02226|lncRNA|chr5:8337180:8337295:-	0	-
#Deleted in new
chr5	83531351	83531416	ENSG00000249835.2|VCAN-AS1|lncRNA|chr5:83531351:83531416:-	0	-
#Deleted in new
chr5	83534098	83534173	ENSG00000249835.2|VCAN-AS1|lncRNA|chr5:83534098:83534173:-	0	-
#Deleted in new
chr5	837364	837478	ENSG00000188818.12|ZDHHC11|pc|chr5:837364:837478:-	0	-
#Deleted in new
chr5	837364	837480	ENSG00000188818.12|ZDHHC11|pc|chr5:837364:837480:-	0	-
#Deleted in new
chr5	837435	837480	ENSG00000188818.12|ZDHHC11|pc|chr5:837435:837480:-	0	-
#Deleted in new
chr5	8387637	8387709	ENSG00000249159.6|AC091965.1|lncRNA|chr5:8387637:8387709:-	0	-
#Deleted in new
chr5	84078628	84078828	ENSG00000164176.12|EDIL3|pc|chr5:84078628:84078828:-	0	-
#Partially deleted in new
chr5	840802	842495	ENSG00000188818.12|ZDHHC11|pc|chr5:840802:842495:-	0	-
#Deleted in new
chr5	841577	841919	ENSG00000188818.12|ZDHHC11|pc|chr5:841577:841919:-	0	-
#Deleted in new
chr5	8433072	8433148	ENSG00000249159.6|AC091965.1|lncRNA|chr5:8433072:8433148:-	0	-
#Deleted in new
chr5	8433854	8433972	ENSG00000249159.6|AC091965.1|lncRNA|chr5:8433854:8433972:-	0	-
#Deleted in new
chr5	84387821	84387936	ENSG00000250320.5|AC113383.1|lncRNA|chr5:84387821:84387936:+	0	+
#Deleted in new
chr5	84387821	84388057	ENSG00000250320.5|AC113383.1|lncRNA|chr5:84387821:84388057:+	0	+
#Deleted in new
chr5	84387821	84388163	ENSG00000250320.5|AC113383.1|lncRNA|chr5:84387821:84388163:+	0	+
#Deleted in new
chr5	84399584	84399651	ENSG00000250320.5|AC113383.1|lncRNA|chr5:84399584:84399651:+	0	+
#Deleted in new
chr5	84399584	84399652	ENSG00000250320.5|AC113383.1|lncRNA|chr5:84399584:84399652:+	0	+
#Deleted in new
chr5	84417278	84417316	ENSG00000250320.5|AC113383.1|lncRNA|chr5:84417278:84417316:+	0	+
#Deleted in new
chr5	8444948	8445535	ENSG00000272049.1|AC091965.4|lncRNA|chr5:8444948:8445535:-	0	-
#Deleted in new
chr5	8446100	8446355	ENSG00000249159.6|AC091965.1|lncRNA|chr5:8446100:8446355:-	0	-
#Deleted in new
chr5	8450742	8451644	ENSG00000247516.6|MIR4458HG|lncRNA|chr5:8450742:8451644:+	0	+
#Deleted in new
chr5	8452222	8452280	ENSG00000245729.2|LINC02226|lncRNA|chr5:8452222:8452280:-	0	-
#Deleted in new
chr5	8452222	8452280	ENSG00000249159.6|AC091965.1|lncRNA|chr5:8452222:8452280:-	0	-
#Deleted in new
chr5	8457448	8457532	ENSG00000249159.6|AC091965.1|lncRNA|chr5:8457448:8457532:-	0	-
#Deleted in new
chr5	8457448	8457558	ENSG00000245729.2|LINC02226|lncRNA|chr5:8457448:8457558:-	0	-
#Deleted in new
chr5	8457448	8457564	ENSG00000249159.6|AC091965.1|lncRNA|chr5:8457448:8457564:-	0	-
#Deleted in new
chr5	8457492	8457766	ENSG00000247516.6|MIR4458HG|lncRNA|chr5:8457492:8457766:+	0	+
#Deleted in new
chr5	8457690	8457766	ENSG00000247516.6|MIR4458HG|lncRNA|chr5:8457690:8457766:+	0	+
#Deleted in new
chr5	8458841	8459183	ENSG00000279075.1|AC091965.5|lncRNA|chr5:8458841:8459183:+	0	+
#Partially deleted in new
chr5	8459932	8460663	ENSG00000247516.6|MIR4458HG|lncRNA|chr5:8459932:8460663:+	0	+
#Partially deleted in new
chr5	8459932	8463095	ENSG00000247516.6|MIR4458HG|lncRNA|chr5:8459932:8463095:+	0	+
#Deleted in new
chr5	849649	849788	ENSG00000188818.12|ZDHHC11|pc|chr5:849649:849788:-	0	-
#Deleted in new
chr5	85112341	85112756	ENSG00000249349.1|AC114928.1|lncRNA|chr5:85112341:85112756:-	0	-
#Deleted in new
chr5	85212957	85213614	ENSG00000249792.1|AC117522.2|lncRNA|chr5:85212957:85213614:-	0	-
#Deleted in new
chr5	8525178	8525344	ENSG00000249782.1|AC027328.1|lncRNA|chr5:8525178:8525344:+	0	+
#Deleted in new
chr5	8528510	8528679	ENSG00000249782.1|AC027328.1|lncRNA|chr5:8528510:8528679:+	0	+
#Deleted in new
chr5	85420027	85420451	ENSG00000248667.1|AC010486.1|lncRNA|chr5:85420027:85420451:-	0	-
#Deleted in new
chr5	85446973	85447758	ENSG00000249842.1|AC010486.3|lncRNA|chr5:85446973:85447758:+	0	+
#Deleted in new
chr5	8572046	8572206	ENSG00000279097.1|AC091953.2|lncRNA|chr5:8572046:8572206:+	0	+
#Deleted in new
chr5	85848501	85849199	ENSG00000249153.1|AC026414.1|lncRNA|chr5:85848501:85849199:+	0	+
#Deleted in new
chr5	8614355	8614696	ENSG00000279264.1|AC091953.4|lncRNA|chr5:8614355:8614696:+	0	+
#Deleted in new
chr5	86335023	86335808	ENSG00000248195.1|AC016550.1|lncRNA|chr5:86335023:86335808:+	0	+
#Deleted in new
chr5	86353802	86353948	ENSG00000248363.5|AC016550.2|lncRNA|chr5:86353802:86353948:+	0	+
#Deleted in new
chr5	86360011	86360142	ENSG00000248363.5|AC016550.2|lncRNA|chr5:86360011:86360142:+	0	+
#Partially deleted in new
chr5	86380659	86381426	ENSG00000250124.1|AC016550.3|lncRNA|chr5:86380659:86381426:-	0	-
#Deleted in new
chr5	8659763	8660059	ENSG00000279002.1|AC091953.1|lncRNA|chr5:8659763:8660059:-	0	-
#Deleted in new
chr5	8669017	8669250	ENSG00000280373.1|AC091953.5|lncRNA|chr5:8669017:8669250:-	0	-
#Split in new
chr5	86747928	86749772	ENSG00000250544.1|LINC02059|lncRNA|chr5:86747928:86749772:+	0	+
#Deleted in new
chr5	86749115	86749173	ENSG00000250544.1|LINC02059|lncRNA|chr5:86749115:86749173:+	0	+
#Deleted in new
chr5	86797684	86797838	ENSG00000248701.1|AC008539.1|lncRNA|chr5:86797684:86797838:+	0	+
#Deleted in new
chr5	86799952	86800280	ENSG00000248701.1|AC008539.1|lncRNA|chr5:86799952:86800280:+	0	+
#Deleted in new
chr5	8685580	8685816	ENSG00000279125.1|AC091953.3|lncRNA|chr5:8685580:8685816:-	0	-
#Deleted in new
chr5	868606	868804	ENSG00000028310.17|BRD9|pc|chr5:868606:868804:-	0	-
#Deleted in new
chr5	868606	869119	ENSG00000028310.17|BRD9|pc|chr5:868606:869119:-	0	-
#Deleted in new
chr5	868701	868804	ENSG00000028310.17|BRD9|pc|chr5:868701:868804:-	0	-
#Deleted in new
chr5	868748	868804	ENSG00000028310.17|BRD9|pc|chr5:868748:868804:-	0	-
#Deleted in new
chr5	869037	869119	ENSG00000028310.17|BRD9|pc|chr5:869037:869119:-	0	-
#Deleted in new
chr5	869244	869394	ENSG00000028310.17|BRD9|pc|chr5:869244:869394:-	0	-
#Deleted in new
chr5	869244	869404	ENSG00000028310.17|BRD9|pc|chr5:869244:869404:-	0	-
#Deleted in new
chr5	87105414	87105538	ENSG00000249061.1|AC109492.1|lncRNA|chr5:87105414:87105538:+	0	+
#Deleted in new
chr5	87120147	87120194	ENSG00000249061.1|AC109492.1|lncRNA|chr5:87120147:87120194:+	0	+
#Deleted in new
chr5	8717683	8717883	ENSG00000280438.1|AC091932.4|lncRNA|chr5:8717683:8717883:-	0	-
#Partially deleted in new
chr5	87205407	87205694	ENSG00000233828.3|LINC01949|lncRNA|chr5:87205407:87205694:-	0	-
#Deleted in new
chr5	87216605	87218350	ENSG00000233828.3|LINC01949|lncRNA|chr5:87216605:87218350:-	0	-
#Partially deleted in new
chr5	87238814	87239790	ENSG00000233828.3|LINC01949|lncRNA|chr5:87238814:87239790:-	0	-
#Partially deleted in new
chr5	87238814	87240145	ENSG00000233828.3|LINC01949|lncRNA|chr5:87238814:87240145:-	0	-
#Deleted in new
chr5	87366350	87366495	ENSG00000145715.14|RASA1|pc|chr5:87366350:87366495:+	0	+
#Deleted in new
chr5	8754868	8755159	ENSG00000278877.1|AC091932.2|lncRNA|chr5:8754868:8755159:+	0	+
#Deleted in new
chr5	87715471	87715634	ENSG00000248708.1|LINC02144|lncRNA|chr5:87715471:87715634:-	0	-
#Deleted in new
chr5	8785041	8785468	ENSG00000260981.1|AC091932.1|lncRNA|chr5:8785041:8785468:-	0	-
#Deleted in new
chr5	8793874	8794197	ENSG00000280185.1|AC091932.3|lncRNA|chr5:8793874:8794197:+	0	+
#Partially deleted in new
chr5	881106	882545	ENSG00000028310.17|BRD9|pc|chr5:881106:882545:-	0	-
#Deleted in new
chr5	88189632	88190261	ENSG00000164180.13|TMEM161B|pc|chr5:88189632:88190261:-	0	-
#Deleted in new
chr5	88221300	88221471	ENSG00000164180.13|TMEM161B|pc|chr5:88221300:88221471:-	0	-
#Deleted in new
chr5	88221673	88221760	ENSG00000164180.13|TMEM161B|pc|chr5:88221673:88221760:-	0	-
#Deleted in new
chr5	88250650	88251037	ENSG00000164180.13|TMEM161B|pc|chr5:88250650:88251037:-	0	-
#Deleted in new
chr5	88275910	88276222	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88275910:88276222:+	0	+
#Deleted in new
chr5	88282041	88282106	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88282041:88282106:+	0	+
#Deleted in new
chr5	88282714	88282866	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88282714:88282866:+	0	+
#Deleted in new
chr5	88282756	88282866	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88282756:88282866:+	0	+
#Deleted in new
chr5	88283009	88283086	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88283009:88283086:+	0	+
#Deleted in new
chr5	88285740	88285851	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88285740:88285851:+	0	+
#Deleted in new
chr5	88285740	88286067	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88285740:88286067:+	0	+
#Deleted in new
chr5	88291383	88291476	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88291383:88291476:+	0	+
#Deleted in new
chr5	88292567	88292643	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88292567:88292643:+	0	+
#Deleted in new
chr5	88292567	88292755	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88292567:88292755:+	0	+
#Partially deleted in new
chr5	882955	884070	ENSG00000028310.17|BRD9|pc|chr5:882955:884070:-	0	-
#Deleted in new
chr5	883331	883369	ENSG00000028310.17|BRD9|pc|chr5:883331:883369:-	0	-
#Deleted in new
chr5	883331	883407	ENSG00000028310.17|BRD9|pc|chr5:883331:883407:-	0	-
#Deleted in new
chr5	883350	883450	ENSG00000028310.17|BRD9|pc|chr5:883350:883450:-	0	-
#Deleted in new
chr5	8839731	8839958	ENSG00000250198.1|LINC02199|lncRNA|chr5:8839731:8839958:+	0	+
#Deleted in new
chr5	8839758	8842460	ENSG00000250198.1|LINC02199|lncRNA|chr5:8839758:8842460:+	0	+
#Deleted in new
chr5	8839764	8839958	ENSG00000250198.1|LINC02199|lncRNA|chr5:8839764:8839958:+	0	+
#Partially deleted in new
chr5	88417186	88417491	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88417186:88417491:+	0	+
#Deleted in new
chr5	88426410	88426793	ENSG00000250156.3|LINC02060|lncRNA|chr5:88426410:88426793:-	0	-
#Deleted in new
chr5	88426501	88426793	ENSG00000250156.3|LINC02060|lncRNA|chr5:88426501:88426793:-	0	-
#Deleted in new
chr5	88426694	88426801	ENSG00000247828.7|TMEM161B-AS1|lncRNA|chr5:88426694:88426801:+	0	+
#Deleted in new
chr5	88611663	88611776	ENSG00000245526.10|LINC00461|lncRNA|chr5:88611663:88611776:-	0	-
#Deleted in new
chr5	8868966	8869018	ENSG00000250198.1|LINC02199|lncRNA|chr5:8868966:8869018:+	0	+
#Deleted in new
chr5	88705522	88705656	ENSG00000245864.2|MEF2C-AS2|lncRNA|chr5:88705522:88705656:+	0	+
#Deleted in new
chr5	8873735	8873859	ENSG00000250198.1|LINC02199|lncRNA|chr5:8873735:8873859:+	0	+
#Deleted in new
chr5	88771778	88771858	ENSG00000081189.15|MEF2C|pc|chr5:88771778:88771858:-	0	-
#Deleted in new
chr5	88771788	88771866	ENSG00000081189.15|MEF2C|pc|chr5:88771788:88771866:-	0	-
#Deleted in new
chr5	88771972	88772000	ENSG00000081189.15|MEF2C|pc|chr5:88771972:88772000:-	0	-
#Deleted in new
chr5	88772265	88772346	ENSG00000081189.15|MEF2C|pc|chr5:88772265:88772346:-	0	-
#Deleted in new
chr5	88772281	88772361	ENSG00000081189.15|MEF2C|pc|chr5:88772281:88772361:-	0	-
#Deleted in new
chr5	8880887	8881051	ENSG00000250198.1|LINC02199|lncRNA|chr5:8880887:8881051:+	0	+
#Deleted in new
chr5	8880887	8881525	ENSG00000250198.1|LINC02199|lncRNA|chr5:8880887:8881525:+	0	+
#Deleted in new
chr5	8881135	8881240	ENSG00000250198.1|LINC02199|lncRNA|chr5:8881135:8881240:+	0	+
#Deleted in new
chr5	888234	888407	ENSG00000028310.17|BRD9|pc|chr5:888234:888407:-	0	-
#Deleted in new
chr5	89094958	89095029	ENSG00000248309.7|MEF2C-AS1|lncRNA|chr5:89094958:89095029:+	0	+
#Partially deleted in new
chr5	89150532	89150595	ENSG00000248309.7|MEF2C-AS1|lncRNA|chr5:89150532:89150595:+	0	+
#Deleted in new
chr5	89168249	89168668	ENSG00000248309.7|MEF2C-AS1|lncRNA|chr5:89168249:89168668:+	0	+
#Deleted in new
chr5	893641	893720	ENSG00000071539.13|TRIP13|pc|chr5:893641:893720:+	0	+
#Deleted in new
chr5	89418806	89418892	ENSG00000248309.7|MEF2C-AS1|lncRNA|chr5:89418806:89418892:+	0	+
#Deleted in new
chr5	89469921	89470039	ENSG00000250831.1|AC074131.1|lncRNA|chr5:89469921:89470039:-	0	-
#Deleted in new
chr5	89581208	89581376	ENSG00000250437.1|LINC02161|lncRNA|chr5:89581208:89581376:+	0	+
#Deleted in new
chr5	89677449	89677701	ENSG00000250437.1|LINC02161|lncRNA|chr5:89677449:89677701:+	0	+
#Deleted in new
chr5	89904862	89904908	ENSG00000214942.4|AC008448.1|lncRNA|chr5:89904862:89904908:+	0	+
#Deleted in new
chr5	9001773	9001894	ENSG00000250619.1|AC021088.1|lncRNA|chr5:9001773:9001894:+	0	+
#Deleted in new
chr5	90234925	90234965	ENSG00000248555.6|LINC01339|lncRNA|chr5:90234925:90234965:-	0	-
#Deleted in new
chr5	90235428	90235535	ENSG00000248555.6|LINC01339|lncRNA|chr5:90235428:90235535:-	0	-
#Deleted in new
chr5	90353036	90353530	ENSG00000253321.1|AC099554.1|lncRNA|chr5:90353036:90353530:-	0	-
#Deleted in new
chr5	90490592	90490858	ENSG00000113356.11|POLR3G|pc|chr5:90490592:90490858:+	0	+
#Deleted in new
chr5	90526918	90527002	ENSG00000176018.12|LYSMD3|pc|chr5:90526918:90527002:-	0	-
#Partially deleted in new
chr5	90716466	90718431	ENSG00000164199.16|ADGRV1|pc|chr5:90716466:90718431:+	0	+
#Partially deleted in new
chr5	90762607	90763469	ENSG00000164199.16|ADGRV1|pc|chr5:90762607:90763469:+	0	+
#Deleted in new
chr5	90792780	90793286	ENSG00000164199.16|ADGRV1|pc|chr5:90792780:90793286:+	0	+
#Deleted in new
chr5	90822054	90822182	ENSG00000164199.16|ADGRV1|pc|chr5:90822054:90822182:+	0	+
#Deleted in new
chr5	90825814	90825853	ENSG00000164199.16|ADGRV1|pc|chr5:90825814:90825853:+	0	+
#Partially deleted in new
chr5	908354	908932	ENSG00000071539.13|TRIP13|pc|chr5:908354:908932:+	0	+
#Deleted in new
chr5	90846389	90846599	ENSG00000164199.16|ADGRV1|pc|chr5:90846389:90846599:+	0	+
#Deleted in new
chr5	90850685	90850876	ENSG00000164199.16|ADGRV1|pc|chr5:90850685:90850876:+	0	+
#Deleted in new
chr5	90899182	90899323	ENSG00000164199.16|ADGRV1|pc|chr5:90899182:90899323:+	0	+
#Deleted in new
chr5	90929239	90929398	ENSG00000164199.16|ADGRV1|pc|chr5:90929239:90929398:+	0	+
#Deleted in new
chr5	90929526	90929661	ENSG00000164199.16|ADGRV1|pc|chr5:90929526:90929661:+	0	+
#Deleted in new
chr5	91092619	91092673	ENSG00000164199.16|ADGRV1|pc|chr5:91092619:91092673:+	0	+
#Partially deleted in new
chr5	91303872	91303971	ENSG00000248323.5|LUCAT1|lncRNA|chr5:91303872:91303971:-	0	-
#Deleted in new
chr5	91313637	91313777	ENSG00000248323.5|LUCAT1|lncRNA|chr5:91313637:91313777:-	0	-
#Deleted in new
chr5	91313637	91313777	ENSG00000271762.1|AC123595.2|lncRNA|chr5:91313637:91313777:-	0	-
#Deleted in new
chr5	91355379	91356026	ENSG00000241059.2|AC008799.2|lncRNA|chr5:91355379:91356026:+	0	+
#Deleted in new
chr5	91418708	91418771	ENSG00000281357.2|ARRDC3-AS1|lncRNA|chr5:91418708:91418771:+	0	+
#Deleted in new
chr5	91422777	91422963	ENSG00000281357.2|ARRDC3-AS1|lncRNA|chr5:91422777:91422963:+	0	+
#Deleted in new
chr5	91438939	91439085	ENSG00000281357.2|ARRDC3-AS1|lncRNA|chr5:91438939:91439085:+	0	+
#Deleted in new
chr5	919019	919357	ENSG00000071539.13|TRIP13|pc|chr5:919019:919357:+	0	+
#Deleted in new
chr5	92150	92276	ENSG00000153404.14|PLEKHG4B|pc|chr5:92150:92276:+	0	+
#Deleted in new
chr5	92199536	92199628	ENSG00000250049.5|AC114316.2|lncRNA|chr5:92199536:92199628:+	0	+
#Deleted in new
chr5	92204604	92204684	ENSG00000250049.5|AC114316.2|lncRNA|chr5:92204604:92204684:+	0	+
#Deleted in new
chr5	92329229	92329371	ENSG00000248864.1|AC114316.1|lncRNA|chr5:92329229:92329371:+	0	+
#Deleted in new
chr5	92332448	92332584	ENSG00000248864.1|AC114316.1|lncRNA|chr5:92332448:92332584:+	0	+
#Deleted in new
chr5	92400917	92401061	ENSG00000250049.5|AC114316.2|lncRNA|chr5:92400917:92401061:+	0	+
#Deleted in new
chr5	92410255	92410361	ENSG00000249776.5|AC124854.1|lncRNA|chr5:92410255:92410361:-	0	-
#Deleted in new
chr5	92415460	92415684	ENSG00000250049.5|AC114316.2|lncRNA|chr5:92415460:92415684:+	0	+
#Deleted in new
chr5	92479378	92479426	ENSG00000250049.5|AC114316.2|lncRNA|chr5:92479378:92479426:+	0	+
#Deleted in new
chr5	92507347	92507465	ENSG00000249776.5|AC124854.1|lncRNA|chr5:92507347:92507465:-	0	-
#Deleted in new
chr5	92654847	92654936	ENSG00000249169.1|AC026780.1|lncRNA|chr5:92654847:92654936:+	0	+
#Deleted in new
chr5	92826254	92826511	ENSG00000248588.1|AC008517.1|lncRNA|chr5:92826254:92826511:+	0	+
#Partially deleted in new
chr5	92913718	92913885	ENSG00000248528.1|LINC02058|lncRNA|chr5:92913718:92913885:-	0	-
#Deleted in new
chr5	93068625	93068669	ENSG00000251361.1|AC012625.1|lncRNA|chr5:93068625:93068669:-	0	-
#Deleted in new
chr5	93496056	93496103	ENSG00000237187.8|NR2F1-AS1|lncRNA|chr5:93496056:93496103:-	0	-
#Deleted in new
chr5	93544794	93544915	ENSG00000237187.8|NR2F1-AS1|lncRNA|chr5:93544794:93544915:-	0	-
#Deleted in new
chr5	93563363	93563463	ENSG00000237187.8|NR2F1-AS1|lncRNA|chr5:93563363:93563463:-	0	-
#Deleted in new
chr5	9367347	9367395	ENSG00000248537.1|AC091906.1|lncRNA|chr5:9367347:9367395:+	0	+
#Partially deleted in new
chr5	93733219	93741637	ENSG00000248483.6|POU5F2|pc|chr5:93733219:93741637:-	0	-
#Deleted in new
chr5	93737811	93737940	ENSG00000113391.18|FAM172A|pc|chr5:93737811:93737940:-	0	-
#Partially deleted in new
chr5	93860668	93863825	ENSG00000251023.1|AC114980.1|lncRNA|chr5:93860668:93863825:-	0	-
#Partially deleted in new
chr5	9422347	9422481	ENSG00000248537.1|AC091906.1|lncRNA|chr5:9422347:9422481:+	0	+
#Partially deleted in new
chr5	94412973	94417380	ENSG00000185261.14|KIAA0825|pc|chr5:94412973:94417380:-	0	-
#Deleted in new
chr5	94611905	94611937	ENSG00000270133.1|AC025766.1|lncRNA|chr5:94611905:94611937:-	0	-
#Deleted in new
chr5	94615549	94615695	ENSG00000270133.1|AC025766.1|lncRNA|chr5:94615549:94615695:-	0	-
#Deleted in new
chr5	94620064	94620171	ENSG00000133302.12|SLF1|pc|chr5:94620064:94620171:+	0	+
#Deleted in new
chr5	94629663	94629720	ENSG00000133302.12|SLF1|pc|chr5:94629663:94629720:+	0	+
#Deleted in new
chr5	946314	946476	ENSG00000248949.1|AC122719.1|lncRNA|chr5:946314:946476:+	0	+
#Deleted in new
chr5	94976744	94976809	ENSG00000175471.19|MCTP1|pc|chr5:94976744:94976809:-	0	-
#Deleted in new
chr5	94978983	94979066	ENSG00000175471.19|MCTP1|pc|chr5:94978983:94979066:-	0	-
#Deleted in new
chr5	94979150	94979607	ENSG00000249545.1|AC012312.1|lncRNA|chr5:94979150:94979607:+	0	+
#Deleted in new
chr5	95068784	95068829	ENSG00000175471.19|MCTP1|pc|chr5:95068784:95068829:-	0	-
#Deleted in new
chr5	9511332	9511410	ENSG00000251370.1|SEMA5A-AS1|lncRNA|chr5:9511332:9511410:+	0	+
#Deleted in new
chr5	95154241	95154274	ENSG00000175471.19|MCTP1|pc|chr5:95154241:95154274:-	0	-
#Deleted in new
chr5	95406120	95406308	ENSG00000153347.9|FAM81B|pc|chr5:95406120:95406308:+	0	+
#Deleted in new
chr5	95410754	95410810	ENSG00000153347.9|FAM81B|pc|chr5:95410754:95410810:+	0	+
#Partially deleted in new
chr5	95529266	95529361	ENSG00000198677.10|TTC37|pc|chr5:95529266:95529361:-	0	-
#Deleted in new
chr5	95556207	95557057	ENSG00000164291.16|ARSK|pc|chr5:95556207:95557057:+	0	+
#Deleted in new
chr5	95580891	95580942	ENSG00000164291.16|ARSK|pc|chr5:95580891:95580942:+	0	+
#Partially deleted in new
chr5	95652136	95652815	ENSG00000175449.13|RFESD|pc|chr5:95652136:95652815:+	0	+
#Partially deleted in new
chr5	95652136	95652863	ENSG00000175449.13|RFESD|pc|chr5:95652136:95652863:+	0	+
#Partially deleted in new
chr5	95652180	95653209	ENSG00000145757.15|SPATA9|pc|chr5:95652180:95653209:-	0	-
#Deleted in new
chr5	95652639	95653209	ENSG00000145757.15|SPATA9|pc|chr5:95652639:95653209:-	0	-
#Deleted in new
chr5	95652980	95653209	ENSG00000145757.15|SPATA9|pc|chr5:95652980:95653209:-	0	-
#Deleted in new
chr5	95653116	95653214	ENSG00000175449.13|RFESD|pc|chr5:95653116:95653214:+	0	+
#Deleted in new
chr5	95684594	95684773	ENSG00000175449.13|RFESD|pc|chr5:95684594:95684773:+	0	+
#Deleted in new
chr5	95698587	95698711	ENSG00000145757.15|SPATA9|pc|chr5:95698587:95698711:-	0	-
#Deleted in new
chr5	95708634	95708835	ENSG00000250240.5|AC008840.1|lncRNA|chr5:95708634:95708835:-	0	-
#Deleted in new
chr5	95713521	95713590	ENSG00000164292.12|RHOBTB3|pc|chr5:95713521:95713590:+	0	+
#Deleted in new
chr5	95713521	95713711	ENSG00000164292.12|RHOBTB3|pc|chr5:95713521:95713711:+	0	+
#Deleted in new
chr5	95716981	95717081	ENSG00000250240.5|AC008840.1|lncRNA|chr5:95716981:95717081:-	0	-
#Deleted in new
chr5	95717534	95717765	ENSG00000164292.12|RHOBTB3|pc|chr5:95717534:95717765:+	0	+
#Deleted in new
chr5	95717632	95717765	ENSG00000164292.12|RHOBTB3|pc|chr5:95717632:95717765:+	0	+
#Deleted in new
chr5	95751318	95751460	ENSG00000173221.13|GLRX|pc|chr5:95751318:95751460:-	0	-
#Partially deleted in new
chr5	95781335	95782806	ENSG00000173221.13|GLRX|pc|chr5:95781335:95782806:-	0	-
#Deleted in new
chr5	95789589	95789650	ENSG00000173221.13|GLRX|pc|chr5:95789589:95789650:-	0	-
#Deleted in new
chr5	95849308	95849855	ENSG00000272021.1|AC008592.5|lncRNA|chr5:95849308:95849855:+	0	+
#Deleted in new
chr5	95852231	95852714	ENSG00000236882.7|LINC01554|lncRNA|chr5:95852231:95852714:+	0	+
#Deleted in new
chr5	95852585	95852721	ENSG00000251409.1|AC008592.4|lncRNA|chr5:95852585:95852721:-	0	-
#Deleted in new
chr5	95852791	95852926	ENSG00000236882.7|LINC01554|lncRNA|chr5:95852791:95852926:+	0	+
#Deleted in new
chr5	95980336	95980527	ENSG00000250955.1|AC008592.2|lncRNA|chr5:95980336:95980527:-	0	-
#Deleted in new
chr5	96110933	96111005	ENSG00000250551.1|MIR583HG|lncRNA|chr5:96110933:96111005:+	0	+
#Deleted in new
chr5	96213345	96213789	ENSG00000249746.1|AC099509.1|lncRNA|chr5:96213345:96213789:-	0	-
#Deleted in new
chr5	9623465	9623602	ENSG00000248525.2|AC026787.1|lncRNA|chr5:9623465:9623602:-	0	-
#Deleted in new
chr5	96308723	96308882	ENSG00000251314.2|AC104123.1|lncRNA|chr5:96308723:96308882:+	0	+
#Deleted in new
chr5	96318472	96318544	ENSG00000251314.2|AC104123.1|lncRNA|chr5:96318472:96318544:+	0	+
#Deleted in new
chr5	96318472	96319018	ENSG00000251314.2|AC104123.1|lncRNA|chr5:96318472:96319018:+	0	+
#Deleted in new
chr5	96529820	96529880	ENSG00000153113.23|CAST|pc|chr5:96529820:96529880:+	0	+
#Deleted in new
chr5	96545215	96545320	ENSG00000153113.23|CAST|pc|chr5:96545215:96545320:+	0	+
#Deleted in new
chr5	96546227	96546518	ENSG00000153113.23|CAST|pc|chr5:96546227:96546518:+	0	+
#Partially deleted in new
chr5	96584492	96585033	ENSG00000251314.2|AC104123.1|lncRNA|chr5:96584492:96585033:+	0	+
#Deleted in new
chr5	96630966	96631000	ENSG00000251314.2|AC104123.1|lncRNA|chr5:96630966:96631000:+	0	+
#Deleted in new
chr5	96630966	96631085	ENSG00000251314.2|AC104123.1|lncRNA|chr5:96630966:96631085:+	0	+
#Partially deleted in new
chr5	96714640	96714971	ENSG00000153113.23|CAST|pc|chr5:96714640:96714971:+	0	+
#Partially deleted in new
chr5	96754657	96755196	ENSG00000153113.23|CAST|pc|chr5:96754657:96755196:+	0	+
#Partially deleted in new
chr5	96760809	96763228	ENSG00000164307.12|ERAP1|pc|chr5:96760809:96763228:-	0	-
#Deleted in new
chr5	96779321	96779595	ENSG00000153113.23|CAST|pc|chr5:96779321:96779595:+	0	+
#Deleted in new
chr5	96804820	96804940	ENSG00000164307.12|ERAP1|pc|chr5:96804820:96804940:-	0	-
#Deleted in new
chr5	96814027	96814310	ENSG00000247121.6|AC009126.1|lncRNA|chr5:96814027:96814310:-	0	-
#Deleted in new
chr5	96814031	96814310	ENSG00000247121.6|AC009126.1|lncRNA|chr5:96814031:96814310:-	0	-
#Deleted in new
chr5	96814173	96814310	ENSG00000247121.6|AC009126.1|lncRNA|chr5:96814173:96814310:-	0	-
#Deleted in new
chr5	96822936	96823117	ENSG00000247121.6|AC009126.1|lncRNA|chr5:96822936:96823117:-	0	-
#Deleted in new
chr5	96848691	96848823	ENSG00000247121.6|AC009126.1|lncRNA|chr5:96848691:96848823:-	0	-
#Deleted in new
chr5	96873285	96873378	ENSG00000247121.6|AC009126.1|lncRNA|chr5:96873285:96873378:-	0	-
#Deleted in new
chr5	96873514	96873612	ENSG00000247121.6|AC009126.1|lncRNA|chr5:96873514:96873612:-	0	-
#Deleted in new
chr5	96873514	96873652	ENSG00000247121.6|AC009126.1|lncRNA|chr5:96873514:96873652:-	0	-
#Deleted in new
chr5	96873514	96873673	ENSG00000247121.6|AC009126.1|lncRNA|chr5:96873514:96873673:-	0	-
#Deleted in new
chr5	96875938	96876527	ENSG00000164308.16|ERAP2|pc|chr5:96875938:96876527:+	0	+
#Deleted in new
chr5	96875985	96876090	ENSG00000164308.16|ERAP2|pc|chr5:96875985:96876090:+	0	+
#Deleted in new
chr5	96876499	96876527	ENSG00000164308.16|ERAP2|pc|chr5:96876499:96876527:+	0	+
#Deleted in new
chr5	96876505	96876527	ENSG00000164308.16|ERAP2|pc|chr5:96876505:96876527:+	0	+
#Deleted in new
chr5	96900120	96900189	ENSG00000164308.16|ERAP2|pc|chr5:96900120:96900189:+	0	+
#Deleted in new
chr5	96900120	96900242	ENSG00000164308.16|ERAP2|pc|chr5:96900120:96900242:+	0	+
#Deleted in new
chr5	96900120	96900245	ENSG00000164308.16|ERAP2|pc|chr5:96900120:96900245:+	0	+
#Deleted in new
chr5	96902642	96902816	ENSG00000164308.16|ERAP2|pc|chr5:96902642:96902816:+	0	+
#Duplicated in new
chr5	96903376	96903560	ENSG00000164308.16|ERAP2|pc|chr5:96903376:96903560:+	0	+
#Deleted in new
chr5	96908960	96909030	ENSG00000164308.16|ERAP2|pc|chr5:96908960:96909030:+	0	+
#Deleted in new
chr5	96908960	96909117	ENSG00000164308.16|ERAP2|pc|chr5:96908960:96909117:+	0	+
#Deleted in new
chr5	96908965	96909117	ENSG00000164308.16|ERAP2|pc|chr5:96908965:96909117:+	0	+
#Deleted in new
chr5	96909579	96909764	ENSG00000164308.16|ERAP2|pc|chr5:96909579:96909764:+	0	+
#Deleted in new
chr5	96909579	96909809	ENSG00000164308.16|ERAP2|pc|chr5:96909579:96909809:+	0	+
#Deleted in new
chr5	96909579	96910280	ENSG00000164308.16|ERAP2|pc|chr5:96909579:96910280:+	0	+
#Deleted in new
chr5	96912636	96912798	ENSG00000164308.16|ERAP2|pc|chr5:96912636:96912798:+	0	+
#Deleted in new
chr5	96915687	96915769	ENSG00000164308.16|ERAP2|pc|chr5:96915687:96915769:+	0	+
#Deleted in new
chr5	96915687	96915849	ENSG00000164308.16|ERAP2|pc|chr5:96915687:96915849:+	0	+
#Deleted in new
chr5	96917461	96917905	ENSG00000164308.16|ERAP2|pc|chr5:96917461:96917905:+	0	+
#Deleted in new
chr5	96917461	96917932	ENSG00000164308.16|ERAP2|pc|chr5:96917461:96917932:+	0	+
#Deleted in new
chr5	96917461	96919716	ENSG00000164308.16|ERAP2|pc|chr5:96917461:96919716:+	0	+
#Deleted in new
chr5	97089074	97089204	ENSG00000251513.2|LIX1-AS1|lncRNA|chr5:97089074:97089204:+	0	+
#Deleted in new
chr5	9712171	9712200	ENSG00000169777.6|TAS2R1|pc|chr5:9712171:9712200:-	0	-
#Deleted in new
chr5	9712171	9712236	ENSG00000249781.6|LINC02112|lncRNA|chr5:9712171:9712236:-	0	-
#Deleted in new
chr5	9712171	9712378	ENSG00000169777.6|TAS2R1|pc|chr5:9712171:9712378:-	0	-
#Deleted in new
chr5	9712171	9712391	ENSG00000249781.6|LINC02112|lncRNA|chr5:9712171:9712391:-	0	-
#Deleted in new
chr5	97166266	97166371	ENSG00000058729.10|RIOK2|pc|chr5:97166266:97166371:-	0	-
#Deleted in new
chr5	97188089	97188243	ENSG00000248758.1|AC008883.1|lncRNA|chr5:97188089:97188243:-	0	-
#Deleted in new
chr5	97201841	97201880	ENSG00000248758.1|AC008883.1|lncRNA|chr5:97201841:97201880:-	0	-
#Deleted in new
chr5	97223370	97223694	ENSG00000251054.1|AC008883.2|lncRNA|chr5:97223370:97223694:-	0	-
#Deleted in new
chr5	97227867	97227957	ENSG00000251054.1|AC008883.2|lncRNA|chr5:97227867:97227957:-	0	-
#Deleted in new
chr5	97431743	97431900	ENSG00000251513.2|LIX1-AS1|lncRNA|chr5:97431743:97431900:+	0	+
#Deleted in new
chr5	97521228	97521290	ENSG00000250331.1|LINC01340|lncRNA|chr5:97521228:97521290:+	0	+
#Deleted in new
chr5	97668550	97668662	ENSG00000250331.1|LINC01340|lncRNA|chr5:97668550:97668662:+	0	+
#Deleted in new
chr5	97899637	97899753	ENSG00000248202.1|LINC02234|lncRNA|chr5:97899637:97899753:+	0	+
#Partially deleted in new
chr5	97922130	97922695	ENSG00000248202.1|LINC02234|lncRNA|chr5:97922130:97922695:+	0	+
#Deleted in new
chr5	979364	979519	ENSG00000250173.1|AC122719.2|lncRNA|chr5:979364:979519:+	0	+
#Deleted in new
chr5	98093399	98093571	ENSG00000248901.1|LINC01846|lncRNA|chr5:98093399:98093571:-	0	-
#Deleted in new
chr5	98160305	98160419	ENSG00000248901.1|LINC01846|lncRNA|chr5:98160305:98160419:-	0	-
#Deleted in new
chr5	98160699	98160792	ENSG00000248901.1|LINC01846|lncRNA|chr5:98160699:98160792:-	0	-
#Deleted in new
chr5	98160946	98161193	ENSG00000248901.1|LINC01846|lncRNA|chr5:98160946:98161193:-	0	-
#Deleted in new
chr5	987179	990623	ENSG00000215246.5|AC116351.1|lncRNA|chr5:987179:990623:-	0	-
#Deleted in new
chr5	9883332	9883367	ENSG00000249781.6|LINC02112|lncRNA|chr5:9883332:9883367:-	0	-
#Deleted in new
chr5	9883922	9883999	ENSG00000249781.6|LINC02112|lncRNA|chr5:9883922:9883999:-	0	-
#Deleted in new
chr5	9883922	9884004	ENSG00000249781.6|LINC02112|lncRNA|chr5:9883922:9884004:-	0	-
#Deleted in new
chr5	9883922	9884028	ENSG00000249781.6|LINC02112|lncRNA|chr5:9883922:9884028:-	0	-
#Partially deleted in new
chr5	98859971	98860682	ENSG00000153922.10|CHD1|pc|chr5:98859971:98860682:-	0	-
#Partially deleted in new
chr5	98885577	98886231	ENSG00000153922.10|CHD1|pc|chr5:98885577:98886231:-	0	-
#Deleted in new
chr5	98976770	98976900	ENSG00000248489.1|LINC02062|lncRNA|chr5:98976770:98976900:+	0	+
#Deleted in new
chr5	98994806	98995013	ENSG00000248489.1|LINC02062|lncRNA|chr5:98994806:98995013:+	0	+
#Deleted in new
chr5	9902651	9902678	ENSG00000249781.6|LINC02112|lncRNA|chr5:9902651:9902678:-	0	-
#Deleted in new
chr5	9902651	9902753	ENSG00000249781.6|LINC02112|lncRNA|chr5:9902651:9902753:-	0	-
#Deleted in new
chr5	9903524	9903826	ENSG00000249781.6|LINC02112|lncRNA|chr5:9903524:9903826:-	0	-
#Deleted in new
chr5	99549431	99549532	ENSG00000249515.1|LINC02113|lncRNA|chr5:99549431:99549532:+	0	+
#Deleted in new
chr5	99577722	99577957	ENSG00000249515.1|LINC02113|lncRNA|chr5:99577722:99577957:+	0	+
#Deleted in new
chr5	997270	997308	ENSG00000215246.5|AC116351.1|lncRNA|chr5:997270:997308:-	0	-
#Deleted in new
chr6	100000793	100000996	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:100000793:100000996:+	0	+
#Deleted in new
chr6	100000939	100000996	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:100000939:100000996:+	0	+
#Deleted in new
chr6	100007434	100007464	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:100007434:100007464:+	0	+
#Deleted in new
chr6	100016978	100017021	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:100016978:100017021:+	0	+
#Deleted in new
chr6	100026074	100026384	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:100026074:100026384:+	0	+
#Deleted in new
chr6	100033153	100033287	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:100033153:100033287:+	0	+
#Deleted in new
chr6	100076241	100076406	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:100076241:100076406:+	0	+
#Deleted in new
chr6	100076241	100076411	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:100076241:100076411:+	0	+
#Deleted in new
chr6	100076241	100076413	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:100076241:100076413:+	0	+
#Deleted in new
chr6	100881060	100881301	ENSG00000112249.13|ASCC3|pc|chr6:100881060:100881301:-	0	-
#Deleted in new
chr6	100881060	100881311	ENSG00000112249.13|ASCC3|pc|chr6:100881060:100881311:-	0	-
#Deleted in new
chr6	100881060	100881348	ENSG00000112249.13|ASCC3|pc|chr6:100881060:100881348:-	0	-
#Deleted in new
chr6	100881060	100881364	ENSG00000112249.13|ASCC3|pc|chr6:100881060:100881364:-	0	-
#Deleted in new
chr6	100881060	100881372	ENSG00000112249.13|ASCC3|pc|chr6:100881060:100881372:-	0	-
#Deleted in new
chr6	100881470	100882987	ENSG00000260000.2|AL133338.1|lncRNA|chr6:100881470:100882987:+	0	+
#Deleted in new
chr6	101744598	101745143	ENSG00000164418.19|GRIK2|pc|chr6:101744598:101745143:+	0	+
#Deleted in new
chr6	101993178	101993842	ENSG00000164418.19|GRIK2|pc|chr6:101993178:101993842:+	0	+
#Deleted in new
chr6	10433027	10433253	ENSG00000183674.11|LINC00518|lncRNA|chr6:10433027:10433253:-	0	-
#Deleted in new
chr6	10434247	10434363	ENSG00000183674.11|LINC00518|lncRNA|chr6:10434247:10434363:-	0	-
#Deleted in new
chr6	10434247	10434426	ENSG00000183674.11|LINC00518|lncRNA|chr6:10434247:10434426:-	0	-
#Deleted in new
chr6	10434247	10434495	ENSG00000183674.11|LINC00518|lncRNA|chr6:10434247:10434495:-	0	-
#Deleted in new
chr6	10434315	10434404	ENSG00000229401.1|MIR5689HG|lncRNA|chr6:10434315:10434404:+	0	+
#Deleted in new
chr6	10434328	10434404	ENSG00000229401.1|MIR5689HG|lncRNA|chr6:10434328:10434404:+	0	+
#Deleted in new
chr6	10434512	10434817	ENSG00000183674.11|LINC00518|lncRNA|chr6:10434512:10434817:-	0	-
#Partially deleted in new
chr6	10434512	10434822	ENSG00000183674.11|LINC00518|lncRNA|chr6:10434512:10434822:-	0	-
#Partially deleted in new
chr6	10434641	10434835	ENSG00000183674.11|LINC00518|lncRNA|chr6:10434641:10434835:-	0	-
#Partially deleted in new
chr6	10434641	10434874	ENSG00000183674.11|LINC00518|lncRNA|chr6:10434641:10434874:-	0	-
#Deleted in new
chr6	10451902	10452056	ENSG00000229401.1|MIR5689HG|lncRNA|chr6:10451902:10452056:+	0	+
#Deleted in new
chr6	10451902	10452247	ENSG00000229401.1|MIR5689HG|lncRNA|chr6:10451902:10452247:+	0	+
#Deleted in new
chr6	10452747	10452827	ENSG00000229401.1|MIR5689HG|lncRNA|chr6:10452747:10452827:+	0	+
#Partially deleted in new
chr6	10456435	10456781	ENSG00000229401.1|MIR5689HG|lncRNA|chr6:10456435:10456781:+	0	+
#Deleted in new
chr6	10474499	10474593	ENSG00000231056.1|LINC02522|lncRNA|chr6:10474499:10474593:-	0	-
#Deleted in new
chr6	104780352	104780457	ENSG00000085382.11|HACE1|pc|chr6:104780352:104780457:-	0	-
#Deleted in new
chr6	104782362	104782455	ENSG00000085382.11|HACE1|pc|chr6:104782362:104782455:-	0	-
#Deleted in new
chr6	104824813	104824907	ENSG00000085382.11|HACE1|pc|chr6:104824813:104824907:-	0	-
#Deleted in new
chr6	104842345	104842353	ENSG00000227535.2|AL357315.1|lncRNA|chr6:104842345:104842353:-	0	-
#Deleted in new
chr6	104858393	104858532	ENSG00000085382.11|HACE1|pc|chr6:104858393:104858532:-	0	-
#Partially deleted in new
chr6	104859378	104859436	ENSG00000085382.11|HACE1|pc|chr6:104859378:104859436:-	0	-
#Partially deleted in new
chr6	104859378	104859560	ENSG00000085382.11|HACE1|pc|chr6:104859378:104859560:-	0	-
#Deleted in new
chr6	104864463	104864566	ENSG00000203809.6|LIN28B-AS1|lncRNA|chr6:104864463:104864566:-	0	-
#Deleted in new
chr6	104865038	104865087	ENSG00000203809.6|LIN28B-AS1|lncRNA|chr6:104865038:104865087:-	0	-
#Deleted in new
chr6	104902555	104902685	ENSG00000203809.6|LIN28B-AS1|lncRNA|chr6:104902555:104902685:-	0	-
#Deleted in new
chr6	10492222	10492394	ENSG00000111846.16|GCNT2|pc|chr6:10492222:10492394:+	0	+
#Deleted in new
chr6	10492223	10492394	ENSG00000111846.16|GCNT2|pc|chr6:10492223:10492394:+	0	+
#Deleted in new
chr6	10492225	10492394	ENSG00000111846.16|GCNT2|pc|chr6:10492225:10492394:+	0	+
#Deleted in new
chr6	104926583	104926882	ENSG00000203809.6|LIN28B-AS1|lncRNA|chr6:104926583:104926882:-	0	-
#Deleted in new
chr6	10492819	10492931	ENSG00000111846.16|GCNT2|pc|chr6:10492819:10492931:+	0	+
#Deleted in new
chr6	104935205	104936682	ENSG00000203809.6|LIN28B-AS1|lncRNA|chr6:104935205:104936682:-	0	-
#Deleted in new
chr6	104936119	104936682	ENSG00000203809.6|LIN28B-AS1|lncRNA|chr6:104936119:104936682:-	0	-
#Deleted in new
chr6	104936293	104936682	ENSG00000203809.6|LIN28B-AS1|lncRNA|chr6:104936293:104936682:-	0	-
#Deleted in new
chr6	104936615	104936649	ENSG00000187772.7|LIN28B|pc|chr6:104936615:104936649:+	0	+
#Deleted in new
chr6	104936849	104937116	ENSG00000187772.7|LIN28B|pc|chr6:104936849:104937116:+	0	+
#Deleted in new
chr6	10509086	10509158	ENSG00000111846.16|GCNT2|pc|chr6:10509086:10509158:+	0	+
#Deleted in new
chr6	10511035	10511295	ENSG00000237685.1|AL139039.3|lncRNA|chr6:10511035:10511295:-	0	-
#Deleted in new
chr6	105136592	105136685	ENSG00000112276.13|BVES|pc|chr6:105136592:105136685:-	0	-
#Deleted in new
chr6	105137686	105137923	ENSG00000203808.10|BVES-AS1|lncRNA|chr6:105137686:105137923:+	0	+
#Deleted in new
chr6	105137769	105137923	ENSG00000203808.10|BVES-AS1|lncRNA|chr6:105137769:105137923:+	0	+
#Deleted in new
chr6	105137822	105137923	ENSG00000203808.10|BVES-AS1|lncRNA|chr6:105137822:105137923:+	0	+
#Deleted in new
chr6	105166543	105166702	ENSG00000203808.10|BVES-AS1|lncRNA|chr6:105166543:105166702:+	0	+
#Deleted in new
chr6	105168730	105168901	ENSG00000203808.10|BVES-AS1|lncRNA|chr6:105168730:105168901:+	0	+
#Deleted in new
chr6	105168730	105169945	ENSG00000203808.10|BVES-AS1|lncRNA|chr6:105168730:105169945:+	0	+
#Deleted in new
chr6	105168738	105168983	ENSG00000203808.10|BVES-AS1|lncRNA|chr6:105168738:105168983:+	0	+
#Deleted in new
chr6	10521282	10521417	ENSG00000111846.16|GCNT2|pc|chr6:10521282:10521417:+	0	+
#Deleted in new
chr6	10521308	10521417	ENSG00000111846.16|GCNT2|pc|chr6:10521308:10521417:+	0	+
#Deleted in new
chr6	10521331	10521417	ENSG00000111846.16|GCNT2|pc|chr6:10521331:10521417:+	0	+
#Deleted in new
chr6	10521350	10521417	ENSG00000111846.16|GCNT2|pc|chr6:10521350:10521417:+	0	+
#Deleted in new
chr6	10521419	10521594	ENSG00000111846.16|GCNT2|pc|chr6:10521419:10521594:+	0	+
#Deleted in new
chr6	10521484	10521594	ENSG00000111846.16|GCNT2|pc|chr6:10521484:10521594:+	0	+
#Deleted in new
chr6	10527365	10527660	ENSG00000111846.16|GCNT2|pc|chr6:10527365:10527660:+	0	+
#Deleted in new
chr6	10527473	10527660	ENSG00000111846.16|GCNT2|pc|chr6:10527473:10527660:+	0	+
#Deleted in new
chr6	105619333	105619462	ENSG00000237567.1|Z97206.2|lncRNA|chr6:105619333:105619462:-	0	-
#Deleted in new
chr6	10619204	10619441	ENSG00000111846.16|GCNT2|pc|chr6:10619204:10619441:+	0	+
#Deleted in new
chr6	10619204	10619631	ENSG00000111846.16|GCNT2|pc|chr6:10619204:10619631:+	0	+
#Deleted in new
chr6	106358565	106358779	ENSG00000233941.1|AL356859.1|lncRNA|chr6:106358565:106358779:-	0	-
#Partially deleted in new
chr6	106359517	106359717	ENSG00000233941.1|AL356859.1|lncRNA|chr6:106359517:106359717:-	0	-
#Deleted in new
chr6	106457153	106457248	ENSG00000282408.1|AL109920.1|lncRNA|chr6:106457153:106457248:-	0	-
#Deleted in new
chr6	106695534	106695674	ENSG00000229654.1|LINC02526|lncRNA|chr6:106695534:106695674:+	0	+
#Deleted in new
chr6	106696274	106696400	ENSG00000229654.1|LINC02526|lncRNA|chr6:106696274:106696400:+	0	+
#Duplicated in new
chr6	10671417	10671598	ENSG00000137434.11|C6orf52|pc|chr6:10671417:10671598:-	0	-
#Duplicated in new
chr6	10671419	10671598	ENSG00000137434.11|C6orf52|pc|chr6:10671419:10671598:-	0	-
#Duplicated in new
chr6	10671421	10671598	ENSG00000137434.11|C6orf52|pc|chr6:10671421:10671598:-	0	-
#Deleted in new
chr6	106724566	106724660	ENSG00000235142.7|LINC02532|lncRNA|chr6:106724566:106724660:-	0	-
#Deleted in new
chr6	106724614	106724660	ENSG00000235142.7|LINC02532|lncRNA|chr6:106724614:106724660:-	0	-
#Deleted in new
chr6	106725341	106725389	ENSG00000235142.7|LINC02532|lncRNA|chr6:106725341:106725389:-	0	-
#Deleted in new
chr6	10672546	10672636	ENSG00000137434.11|C6orf52|pc|chr6:10672546:10672636:-	0	-
#Deleted in new
chr6	106733981	106734073	ENSG00000235142.7|LINC02532|lncRNA|chr6:106733981:106734073:-	0	-
#Deleted in new
chr6	106733981	106734077	ENSG00000235142.7|LINC02532|lncRNA|chr6:106733981:106734077:-	0	-
#Deleted in new
chr6	106735044	106735418	ENSG00000235142.7|LINC02532|lncRNA|chr6:106735044:106735418:-	0	-
#Deleted in new
chr6	106735297	106735418	ENSG00000235142.7|LINC02532|lncRNA|chr6:106735297:106735418:-	0	-
#Partially deleted in new
chr6	106739700	106740087	ENSG00000235142.7|LINC02532|lncRNA|chr6:106739700:106740087:-	0	-
#Deleted in new
chr6	106755869	106755990	ENSG00000235142.7|LINC02532|lncRNA|chr6:106755869:106755990:-	0	-
#Partially deleted in new
chr6	106770125	106772361	ENSG00000235142.7|LINC02532|lncRNA|chr6:106770125:106772361:-	0	-
#Deleted in new
chr6	10683186	10683232	ENSG00000137434.11|C6orf52|pc|chr6:10683186:10683232:-	0	-
#Deleted in new
chr6	10684848	10684923	ENSG00000137434.11|C6orf52|pc|chr6:10684848:10684923:-	0	-
#Deleted in new
chr6	10694493	10694533	ENSG00000137434.11|C6orf52|pc|chr6:10694493:10694533:-	0	-
#Partially deleted in new
chr6	10694493	10694606	ENSG00000137434.11|C6orf52|pc|chr6:10694493:10694606:-	0	-
#Partially deleted in new
chr6	10694493	10694609	ENSG00000137434.11|C6orf52|pc|chr6:10694493:10694609:-	0	-
#Deleted in new
chr6	107028212	107028271	ENSG00000130349.9|C6orf203|pc|chr6:107028212:107028271:+	0	+
#Deleted in new
chr6	107028212	107028797	ENSG00000130349.9|C6orf203|pc|chr6:107028212:107028797:+	0	+
#Deleted in new
chr6	107028568	107028797	ENSG00000130349.9|C6orf203|pc|chr6:107028568:107028797:+	0	+
#Deleted in new
chr6	107030024	107030107	ENSG00000130349.9|C6orf203|pc|chr6:107030024:107030107:+	0	+
#Deleted in new
chr6	107040380	107040907	ENSG00000130349.9|C6orf203|pc|chr6:107040380:107040907:+	0	+
#Deleted in new
chr6	107197840	107197898	ENSG00000164494.11|PDSS2|pc|chr6:107197840:107197898:-	0	-
#Deleted in new
chr6	10722914	10723241	ENSG00000111843.13|TMEM14C|pc|chr6:10722914:10723241:+	0	+
#Deleted in new
chr6	10722974	10723241	ENSG00000111843.13|TMEM14C|pc|chr6:10722974:10723241:+	0	+
#Deleted in new
chr6	10723108	10723241	ENSG00000111843.13|TMEM14C|pc|chr6:10723108:10723241:+	0	+
#Deleted in new
chr6	10723124	10723241	ENSG00000111843.13|TMEM14C|pc|chr6:10723124:10723241:+	0	+
#Deleted in new
chr6	10743323	10744314	ENSG00000272097.1|AL024498.1|lncRNA|chr6:10743323:10744314:-	0	-
#Deleted in new
chr6	10746952	10747229	ENSG00000272097.1|AL024498.1|lncRNA|chr6:10746952:10747229:-	0	-
#Deleted in new
chr6	10747460	10747569	ENSG00000272097.1|AL024498.1|lncRNA|chr6:10747460:10747569:-	0	-
#Deleted in new
chr6	10747460	10747663	ENSG00000272097.1|AL024498.1|lncRNA|chr6:10747460:10747663:-	0	-
#Deleted in new
chr6	10747758	10747881	ENSG00000137210.13|TMEM14B|pc|chr6:10747758:10747881:+	0	+
#Deleted in new
chr6	10747760	10747881	ENSG00000137210.13|TMEM14B|pc|chr6:10747760:10747881:+	0	+
#Deleted in new
chr6	10747772	10747881	ENSG00000137210.13|TMEM14B|pc|chr6:10747772:10747881:+	0	+
#Deleted in new
chr6	10747772	10747885	ENSG00000137210.13|TMEM14B|pc|chr6:10747772:10747885:+	0	+
#Deleted in new
chr6	10747793	10747881	ENSG00000272162.1|AL024498.2|pc|chr6:10747793:10747881:+	0	+
#Deleted in new
chr6	10747800	10747881	ENSG00000137210.13|TMEM14B|pc|chr6:10747800:10747881:+	0	+
#Deleted in new
chr6	10747804	10747881	ENSG00000137210.13|TMEM14B|pc|chr6:10747804:10747881:+	0	+
#Deleted in new
chr6	10747810	10747881	ENSG00000137210.13|TMEM14B|pc|chr6:10747810:10747881:+	0	+
#Deleted in new
chr6	10747816	10747881	ENSG00000137210.13|TMEM14B|pc|chr6:10747816:10747881:+	0	+
#Deleted in new
chr6	10747830	10747881	ENSG00000137210.13|TMEM14B|pc|chr6:10747830:10747881:+	0	+
#Deleted in new
chr6	107509802	107509865	ENSG00000234206.5|AL121957.1|lncRNA|chr6:107509802:107509865:-	0	-
#Deleted in new
chr6	107510549	107510768	ENSG00000234206.5|AL121957.1|lncRNA|chr6:107510549:107510768:-	0	-
#Deleted in new
chr6	10758938	10759684	ENSG00000137210.13|TMEM14B|pc|chr6:10758938:10759684:+	0	+
#Deleted in new
chr6	10758938	10759774	ENSG00000137210.13|TMEM14B|pc|chr6:10758938:10759774:+	0	+
#Deleted in new
chr6	107718953	107719045	ENSG00000146285.13|SCML4|pc|chr6:107718953:107719045:-	0	-
#Deleted in new
chr6	107740064	107740156	ENSG00000146285.13|SCML4|pc|chr6:107740064:107740156:-	0	-
#Deleted in new
chr6	107743941	107744054	ENSG00000146285.13|SCML4|pc|chr6:107743941:107744054:-	0	-
#Deleted in new
chr6	107755570	107755664	ENSG00000146285.13|SCML4|pc|chr6:107755570:107755664:-	0	-
#Deleted in new
chr6	107954583	107954766	ENSG00000025796.13|SEC63|pc|chr6:107954583:107954766:-	0	-
#Deleted in new
chr6	107955964	107956106	ENSG00000025796.13|SEC63|pc|chr6:107955964:107956106:-	0	-
#Deleted in new
chr6	108041471	108042264	ENSG00000081087.14|OSTM1|pc|chr6:108041471:108042264:-	0	-
#Partially deleted in new
chr6	108073641	108073798	ENSG00000081087.14|OSTM1|pc|chr6:108073641:108073798:-	0	-
#Partially deleted in new
chr6	108122335	108122714	ENSG00000081087.14|OSTM1|pc|chr6:108122335:108122714:-	0	-
#Deleted in new
chr6	108222233	108222320	ENSG00000112335.14|SNX3|pc|chr6:108222233:108222320:-	0	-
#Deleted in new
chr6	10826563	10826612	ENSG00000137210.13|TMEM14B|pc|chr6:10826563:10826612:+	0	+
#Deleted in new
chr6	108275641	108275856	ENSG00000230248.1|Z98742.1|lncRNA|chr6:108275641:108275856:+	0	+
#Deleted in new
chr6	108276129	108276546	ENSG00000230248.1|Z98742.1|lncRNA|chr6:108276129:108276546:+	0	+
#Deleted in new
chr6	10827696	10827824	ENSG00000137210.13|TMEM14B|pc|chr6:10827696:10827824:+	0	+
#Deleted in new
chr6	108319616	108319791	ENSG00000135537.16|AFG1L|pc|chr6:108319616:108319791:+	0	+
#Deleted in new
chr6	108344774	108344861	ENSG00000135537.16|AFG1L|pc|chr6:108344774:108344861:+	0	+
#Deleted in new
chr6	108359083	108359863	ENSG00000279498.1|AL356121.2|lncRNA|chr6:108359083:108359863:-	0	-
#Deleted in new
chr6	10851559	10852753	ENSG00000137210.13|TMEM14B|pc|chr6:10851559:10852753:+	0	+
#Deleted in new
chr6	108759417	108759545	ENSG00000203801.8|LINC00222|lncRNA|chr6:108759417:108759545:+	0	+
#Deleted in new
chr6	108759460	108759545	ENSG00000203801.8|LINC00222|lncRNA|chr6:108759460:108759545:+	0	+
#Deleted in new
chr6	108766995	108767269	ENSG00000203801.8|LINC00222|lncRNA|chr6:108766995:108767269:+	0	+
#Deleted in new
chr6	108769795	108769942	ENSG00000203801.8|LINC00222|lncRNA|chr6:108769795:108769942:+	0	+
#Deleted in new
chr6	10882319	10882417	ENSG00000235051.3|AL357497.1|lncRNA|chr6:10882319:10882417:+	0	+
#Partially deleted in new
chr6	10883855	10884349	ENSG00000235051.3|AL357497.1|lncRNA|chr6:10883855:10884349:+	0	+
#Deleted in new
chr6	108924060	108924103	ENSG00000230290.1|ARMC2-AS1|lncRNA|chr6:108924060:108924103:-	0	-
#Deleted in new
chr6	108959459	108959519	ENSG00000118690.12|ARMC2|pc|chr6:108959459:108959519:+	0	+
#Deleted in new
chr6	109090594	109090659	ENSG00000080546.13|SESN1|pc|chr6:109090594:109090659:-	0	-
#Deleted in new
chr6	109100191	109100286	ENSG00000183137.14|CEP57L1|pc|chr6:109100191:109100286:+	0	+
#Deleted in new
chr6	109106034	109106090	ENSG00000183137.14|CEP57L1|pc|chr6:109106034:109106090:+	0	+
#Deleted in new
chr6	109124990	109125031	ENSG00000183137.14|CEP57L1|pc|chr6:109124990:109125031:+	0	+
#Deleted in new
chr6	109129303	109129492	ENSG00000183137.14|CEP57L1|pc|chr6:109129303:109129492:+	0	+
#Deleted in new
chr6	109140420	109140675	ENSG00000183137.14|CEP57L1|pc|chr6:109140420:109140675:+	0	+
#Deleted in new
chr6	109140424	109140465	ENSG00000183137.14|CEP57L1|pc|chr6:109140424:109140465:+	0	+
#Deleted in new
chr6	109156057	109156793	ENSG00000183137.14|CEP57L1|pc|chr6:109156057:109156793:+	0	+
#Deleted in new
chr6	10922690	10922790	ENSG00000153157.12|SYCP2L|pc|chr6:10922690:10922790:+	0	+
#Deleted in new
chr6	10928402	10928450	ENSG00000153157.12|SYCP2L|pc|chr6:10928402:10928450:+	0	+
#Deleted in new
chr6	109403030	109403108	ENSG00000185250.15|PPIL6|pc|chr6:109403030:109403108:-	0	-
#Deleted in new
chr6	109404928	109405048	ENSG00000185250.15|PPIL6|pc|chr6:109404928:109405048:-	0	-
#Deleted in new
chr6	109418087	109418242	ENSG00000185250.15|PPIL6|pc|chr6:109418087:109418242:-	0	-
#Deleted in new
chr6	109483097	109483237	ENSG00000112365.4|ZBTB24|pc|chr6:109483097:109483237:-	0	-
#Partially deleted in new
chr6	109527627	109528751	ENSG00000155085.15|AK9|pc|chr6:109527627:109528751:-	0	-
#Partially deleted in new
chr6	109527628	109529073	ENSG00000155085.15|AK9|pc|chr6:109527628:109529073:-	0	-
#Partially deleted in new
chr6	109631692	109633103	ENSG00000155085.15|AK9|pc|chr6:109631692:109633103:-	0	-
#Deleted in new
chr6	10974767	10974873	ENSG00000153157.12|SYCP2L|pc|chr6:10974767:10974873:+	0	+
#Deleted in new
chr6	10978787	10978902	ENSG00000153157.12|SYCP2L|pc|chr6:10978787:10978902:+	0	+
#Deleted in new
chr6	10979290	10979320	ENSG00000153157.12|SYCP2L|pc|chr6:10979290:10979320:+	0	+
#Deleted in new
chr6	1101068	1101296	ENSG00000176515.1|AL033381.1|lncRNA|chr6:1101068:1101296:+	0	+
#Deleted in new
chr6	110231451	110231671	ENSG00000168438.14|CDC40|pc|chr6:110231451:110231671:+	0	+
#Deleted in new
chr6	11043523	11043760	ENSG00000230314.6|ELOVL2-AS1|lncRNA|chr6:11043523:11043760:+	0	+
#Deleted in new
chr6	11043759	11043825	ENSG00000230314.6|ELOVL2-AS1|lncRNA|chr6:11043759:11043825:+	0	+
#Partially deleted in new
chr6	11044692	11044966	ENSG00000230314.6|ELOVL2-AS1|lncRNA|chr6:11044692:11044966:+	0	+
#Deleted in new
chr6	110474931	110474997	ENSG00000004809.13|SLC22A16|pc|chr6:110474931:110474997:-	0	-
#Deleted in new
chr6	110477906	110479436	ENSG00000260188.1|AC002464.1|lncRNA|chr6:110477906:110479436:+	0	+
#Deleted in new
chr6	11047908	11047999	ENSG00000230314.6|ELOVL2-AS1|lncRNA|chr6:11047908:11047999:+	0	+
#Deleted in new
chr6	11049108	11049219	ENSG00000230314.6|ELOVL2-AS1|lncRNA|chr6:11049108:11049219:+	0	+
#Deleted in new
chr6	11073454	11073545	ENSG00000230314.6|ELOVL2-AS1|lncRNA|chr6:11073454:11073545:+	0	+
#Deleted in new
chr6	11077688	11077818	ENSG00000230314.6|ELOVL2-AS1|lncRNA|chr6:11077688:11077818:+	0	+
#Deleted in new
chr6	11077688	11078066	ENSG00000230314.6|ELOVL2-AS1|lncRNA|chr6:11077688:11078066:+	0	+
#Deleted in new
chr6	11077688	11078076	ENSG00000230314.6|ELOVL2-AS1|lncRNA|chr6:11077688:11078076:+	0	+
#Deleted in new
chr6	11077688	11078226	ENSG00000230314.6|ELOVL2-AS1|lncRNA|chr6:11077688:11078226:+	0	+
#Partially deleted in new
chr6	110888285	110890356	ENSG00000123505.15|AMD1|pc|chr6:110888285:110890356:+	0	+
#Partially deleted in new
chr6	110890788	110892203	ENSG00000123505.15|AMD1|pc|chr6:110890788:110892203:+	0	+
#Deleted in new
chr6	11102488	11105630	ENSG00000244476.2|ERVFRD-1|pc|chr6:11102488:11105630:-	0	-
#Deleted in new
chr6	11102490	11105674	ENSG00000244476.2|ERVFRD-1|pc|chr6:11102490:11105674:-	0	-
#Split in new
chr6	111025402	111028263	ENSG00000197498.12|RPF2|pc|chr6:111025402:111028263:+	0	+
#Deleted in new
chr6	11111676	11111732	ENSG00000244476.2|ERVFRD-1|pc|chr6:11111676:11111732:-	0	-
#Deleted in new
chr6	111173437	111173525	ENSG00000112394.16|SLC16A10|pc|chr6:111173437:111173525:+	0	+
#Partially deleted in new
chr6	111178401	111178714	ENSG00000112394.16|SLC16A10|pc|chr6:111178401:111178714:+	0	+
#Partially deleted in new
chr6	111222002	111231194	ENSG00000112394.16|SLC16A10|pc|chr6:111222002:111231194:+	0	+
#Deleted in new
chr6	111227746	111227923	ENSG00000231046.1|AL360227.1|lncRNA|chr6:111227746:111227923:-	0	-
#Deleted in new
chr6	111231480	111231546	ENSG00000231046.1|AL360227.1|lncRNA|chr6:111231480:111231546:-	0	-
#Deleted in new
chr6	111233998	111234083	ENSG00000231046.1|AL360227.1|lncRNA|chr6:111233998:111234083:-	0	-
#Deleted in new
chr6	111277931	111278158	ENSG00000230177.1|AL080317.1|lncRNA|chr6:111277931:111278158:+	0	+
#Deleted in new
chr6	111278412	111278742	ENSG00000230177.1|AL080317.1|lncRNA|chr6:111278412:111278742:+	0	+
#Partially deleted in new
chr6	111297125	111298510	ENSG00000271789.1|AL080317.2|lncRNA|chr6:111297125:111298510:+	0	+
#Partially deleted in new
chr6	111308013	111308245	ENSG00000009413.15|REV3L|pc|chr6:111308013:111308245:-	0	-
#Deleted in new
chr6	111360640	111360721	ENSG00000229276.1|REV3L-IT1|lncRNA|chr6:111360640:111360721:-	0	-
#Deleted in new
chr6	111361306	111361607	ENSG00000229276.1|REV3L-IT1|lncRNA|chr6:111361306:111361607:-	0	-
#Deleted in new
chr6	111460299	111460406	ENSG00000009413.15|REV3L|pc|chr6:111460299:111460406:-	0	-
#Deleted in new
chr6	111576361	111576470	ENSG00000231889.7|TRAF3IP2-AS1|lncRNA|chr6:111576361:111576470:+	0	+
#Deleted in new
chr6	111576361	111576590	ENSG00000231889.7|TRAF3IP2-AS1|lncRNA|chr6:111576361:111576590:+	0	+
#Partially deleted in new
chr6	111576361	111576741	ENSG00000231889.7|TRAF3IP2-AS1|lncRNA|chr6:111576361:111576741:+	0	+
#Partially deleted in new
chr6	111576361	111576753	ENSG00000231889.7|TRAF3IP2-AS1|lncRNA|chr6:111576361:111576753:+	0	+
#Partially deleted in new
chr6	111576361	111576877	ENSG00000231889.7|TRAF3IP2-AS1|lncRNA|chr6:111576361:111576877:+	0	+
#Deleted in new
chr6	111740980	111741093	ENSG00000010810.17|FYN|pc|chr6:111740980:111741093:-	0	-
#Deleted in new
chr6	111740980	111741097	ENSG00000010810.17|FYN|pc|chr6:111740980:111741097:-	0	-
#Deleted in new
chr6	111758833	111759114	ENSG00000010810.17|FYN|pc|chr6:111758833:111759114:-	0	-
#Deleted in new
chr6	111759039	111759131	ENSG00000010810.17|FYN|pc|chr6:111759039:111759131:-	0	-
#Deleted in new
chr6	111759844	111759917	ENSG00000010810.17|FYN|pc|chr6:111759844:111759917:-	0	-
#Deleted in new
chr6	111759844	111759925	ENSG00000010810.17|FYN|pc|chr6:111759844:111759925:-	0	-
#Deleted in new
chr6	11200270	11200421	ENSG00000111859.16|NEDD9|pc|chr6:11200270:11200421:-	0	-
#Deleted in new
chr6	112060012	112060075	ENSG00000112761.20|WISP3|pc|chr6:112060012:112060075:+	0	+
#Deleted in new
chr6	112066968	112067032	ENSG00000112761.20|WISP3|pc|chr6:112066968:112067032:+	0	+
#Partially deleted in new
chr6	112083915	112084246	ENSG00000074935.13|TUBE1|pc|chr6:112083915:112084246:-	0	-
#Partially deleted in new
chr6	112100669	112102790	ENSG00000203778.7|FAM229B|pc|chr6:112100669:112102790:+	0	+
#Deleted in new
chr6	112158979	112159021	ENSG00000237234.7|Z99289.1|lncRNA|chr6:112158979:112159021:+	0	+
#Deleted in new
chr6	112159400	112159523	ENSG00000237234.7|Z99289.1|lncRNA|chr6:112159400:112159523:+	0	+
#Deleted in new
chr6	112159466	112159523	ENSG00000237234.7|Z99289.1|lncRNA|chr6:112159466:112159523:+	0	+
#Deleted in new
chr6	112162028	112162239	ENSG00000237234.7|Z99289.1|lncRNA|chr6:112162028:112162239:+	0	+
#Deleted in new
chr6	112164041	112164115	ENSG00000237234.7|Z99289.1|lncRNA|chr6:112164041:112164115:+	0	+
#Deleted in new
chr6	112164041	112164156	ENSG00000237234.7|Z99289.1|lncRNA|chr6:112164041:112164156:+	0	+
#Deleted in new
chr6	112166198	112166449	ENSG00000237234.7|Z99289.1|lncRNA|chr6:112166198:112166449:+	0	+
#Deleted in new
chr6	112166198	112166476	ENSG00000237234.7|Z99289.1|lncRNA|chr6:112166198:112166476:+	0	+
#Deleted in new
chr6	112213542	112214070	ENSG00000112769.18|LAMA4|pc|chr6:112213542:112214070:-	0	-
#Deleted in new
chr6	112258357	112258552	ENSG00000226440.7|AL365214.2|lncRNA|chr6:112258357:112258552:+	0	+
#Deleted in new
chr6	112277179	112277311	ENSG00000226440.7|AL365214.2|lncRNA|chr6:112277179:112277311:+	0	+
#Deleted in new
chr6	112279120	112279238	ENSG00000226440.7|AL365214.2|lncRNA|chr6:112279120:112279238:+	0	+
#Deleted in new
chr6	112345038	112345321	ENSG00000281613.2|AL365214.3|pc|chr6:112345038:112345321:+	0	+
#Deleted in new
chr6	112345112	112345159	ENSG00000281613.2|AL365214.3|pc|chr6:112345112:112345159:+	0	+
#Deleted in new
chr6	112347291	112347407	ENSG00000281613.2|AL365214.3|pc|chr6:112347291:112347407:+	0	+
#Deleted in new
chr6	112347329	112347407	ENSG00000251258.1|RFPL4B|pc|chr6:112347329:112347407:+	0	+
#Deleted in new
chr6	112349192	112349321	ENSG00000251258.1|RFPL4B|pc|chr6:112349192:112349321:+	0	+
#Deleted in new
chr6	112349192	112349321	ENSG00000281613.2|AL365214.3|pc|chr6:112349192:112349321:+	0	+
#Deleted in new
chr6	112481527	112481636	ENSG00000232299.1|AL357514.1|lncRNA|chr6:112481527:112481636:-	0	-
#Deleted in new
chr6	11334500	11334561	ENSG00000111859.16|NEDD9|pc|chr6:11334500:11334561:-	0	-
#Deleted in new
chr6	113357002	113357298	ENSG00000223811.1|AL589684.1|lncRNA|chr6:113357002:113357298:-	0	-
#Deleted in new
chr6	113428539	113428978	ENSG00000232316.1|LINC02518|lncRNA|chr6:113428539:113428978:-	0	-
#Deleted in new
chr6	113428550	113428978	ENSG00000232316.1|LINC02518|lncRNA|chr6:113428550:113428978:-	0	-
#Deleted in new
chr6	113432558	113432641	ENSG00000232316.1|LINC02518|lncRNA|chr6:113432558:113432641:-	0	-
#Deleted in new
chr6	11352156	11352780	ENSG00000111859.16|NEDD9|pc|chr6:11352156:11352780:-	0	-
#Deleted in new
chr6	113531117	113531258	ENSG00000236347.1|AL513123.1|lncRNA|chr6:113531117:113531258:+	0	+
#Deleted in new
chr6	113541836	113541901	ENSG00000236347.1|AL513123.1|lncRNA|chr6:113541836:113541901:+	0	+
#Deleted in new
chr6	113623534	113623646	ENSG00000230943.1|LINC02541|lncRNA|chr6:113623534:113623646:-	0	-
#Deleted in new
chr6	113623778	113623822	ENSG00000230943.1|LINC02541|lncRNA|chr6:113623778:113623822:-	0	-
#Deleted in new
chr6	113627469	113627675	ENSG00000230943.1|LINC02541|lncRNA|chr6:113627469:113627675:-	0	-
#Deleted in new
chr6	113627520	113627675	ENSG00000230943.1|LINC02541|lncRNA|chr6:113627520:113627675:-	0	-
#Deleted in new
chr6	113837308	113837368	ENSG00000231912.2|FO393415.3|lncRNA|chr6:113837308:113837368:-	0	-
#Partially deleted in new
chr6	113868012	113870343	ENSG00000227502.2|LINC01268|lncRNA|chr6:113868012:113870343:-	0	-
#Deleted in new
chr6	113870668	113870734	ENSG00000227502.2|LINC01268|lncRNA|chr6:113870668:113870734:-	0	-
#Deleted in new
chr6	113916942	113917052	ENSG00000175967.3|FO393415.1|lncRNA|chr6:113916942:113917052:+	0	+
#Partially deleted in new
chr6	113933027	113941088	ENSG00000196591.11|HDAC2|pc|chr6:113933027:113941088:-	0	-
#Deleted in new
chr6	113991892	113992014	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:113991892:113992014:+	0	+
#Deleted in new
chr6	113991892	113992018	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:113991892:113992018:+	0	+
#Deleted in new
chr6	113991892	113992120	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:113991892:113992120:+	0	+
#Deleted in new
chr6	113991892	113992187	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:113991892:113992187:+	0	+
#Deleted in new
chr6	113995143	113995251	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:113995143:113995251:+	0	+
#Deleted in new
chr6	113995243	113995495	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:113995243:113995495:+	0	+
#Deleted in new
chr6	113995599	113995644	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:113995599:113995644:+	0	+
#Deleted in new
chr6	113995599	113995802	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:113995599:113995802:+	0	+
#Deleted in new
chr6	113995599	113995815	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:113995599:113995815:+	0	+
#Partially deleted in new
chr6	113995599	113995869	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:113995599:113995869:+	0	+
#Partially deleted in new
chr6	113995599	113995915	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:113995599:113995915:+	0	+
#Deleted in new
chr6	114011130	114011308	ENSG00000196591.11|HDAC2|pc|chr6:114011130:114011308:-	0	-
#Partially deleted in new
chr6	114088936	114089019	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114088936:114089019:+	0	+
#Deleted in new
chr6	114112385	114112490	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114112385:114112490:+	0	+
#Deleted in new
chr6	114142786	114143021	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114142786:114143021:+	0	+
#Deleted in new
chr6	114143618	114143918	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114143618:114143918:+	0	+
#Deleted in new
chr6	114167476	114167679	ENSG00000249853.7|HS3ST5|pc|chr6:114167476:114167679:-	0	-
#Deleted in new
chr6	11417349	11417579	ENSG00000233656.1|AL445430.1|lncRNA|chr6:11417349:11417579:+	0	+
#Deleted in new
chr6	114178652	114178720	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114178652:114178720:+	0	+
#Deleted in new
chr6	114230140	114230346	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114230140:114230346:+	0	+
#Deleted in new
chr6	114230156	114230323	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114230156:114230323:+	0	+
#Deleted in new
chr6	114231347	114231441	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114231347:114231441:+	0	+
#Deleted in new
chr6	114406642	114406668	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114406642:114406668:+	0	+
#Deleted in new
chr6	114425611	114425672	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114425611:114425672:+	0	+
#Deleted in new
chr6	114469145	114469299	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114469145:114469299:+	0	+
#Deleted in new
chr6	114471414	114471705	ENSG00000228624.7|HDAC2-AS2|lncRNA|chr6:114471414:114471705:+	0	+
#Deleted in new
chr6	114488587	114488681	ENSG00000232395.1|AL138830.2|lncRNA|chr6:114488587:114488681:-	0	-
#Deleted in new
chr6	114488587	114488752	ENSG00000232395.1|AL138830.2|lncRNA|chr6:114488587:114488752:-	0	-
#Partially deleted in new
chr6	11480953	11481239	ENSG00000233656.1|AL445430.1|lncRNA|chr6:11480953:11481239:+	0	+
#Deleted in new
chr6	11487225	11487343	ENSG00000242753.1|AL445430.2|lncRNA|chr6:11487225:11487343:+	0	+
#Deleted in new
chr6	11487564	11487711	ENSG00000242753.1|AL445430.2|lncRNA|chr6:11487564:11487711:+	0	+
#Deleted in new
chr6	11490312	11490464	ENSG00000242753.1|AL445430.2|lncRNA|chr6:11490312:11490464:+	0	+
#Deleted in new
chr6	11503510	11503663	ENSG00000242753.1|AL445430.2|lncRNA|chr6:11503510:11503663:+	0	+
#Deleted in new
chr6	116158613	116158747	ENSG00000123500.9|COL10A1|pc|chr6:116158613:116158747:-	0	-
#Partially deleted in new
chr6	116243908	116249497	ENSG00000178425.13|NT5DC1|pc|chr6:116243908:116249497:+	0	+
#Deleted in new
chr6	116423109	116423154	ENSG00000111817.16|DSE|pc|chr6:116423109:116423154:+	0	+
#Deleted in new
chr6	116494803	116494925	ENSG00000234117.2|AL445224.1|lncRNA|chr6:116494803:116494925:+	0	+
#Partially deleted in new
chr6	116494988	116497073	ENSG00000173626.9|TRAPPC3L|pc|chr6:116494988:116497073:-	0	-
#Split in new
chr6	116515599	116524792	ENSG00000178033.5|FAM26E|pc|chr6:116515599:116524792:+	0	+
#Deleted in new
chr6	116681186	116681338	ENSG00000196911.10|KPNA5|pc|chr6:116681186:116681338:+	0	+
#Deleted in new
chr6	116681210	116681338	ENSG00000196911.10|KPNA5|pc|chr6:116681210:116681338:+	0	+
#Deleted in new
chr6	116681446	116681552	ENSG00000196911.10|KPNA5|pc|chr6:116681446:116681552:+	0	+
#Duplicated in new
chr6	116725750	116725876	ENSG00000196911.10|KPNA5|pc|chr6:116725750:116725876:+	0	+
#Split in new
chr6	116732135	116741866	ENSG00000196911.10|KPNA5|pc|chr6:116732135:116741866:+	0	+
#Deleted in new
chr6	11717129	11717414	ENSG00000111863.12|ADTRP|pc|chr6:11717129:11717414:-	0	-
#Deleted in new
chr6	11717308	11717414	ENSG00000111863.12|ADTRP|pc|chr6:11717308:11717414:-	0	-
#Deleted in new
chr6	11728326	11728557	ENSG00000111863.12|ADTRP|pc|chr6:11728326:11728557:-	0	-
#Deleted in new
chr6	117451129	117451318	ENSG00000226181.1|AL132671.1|lncRNA|chr6:117451129:117451318:-	0	-
#Deleted in new
chr6	117453406	117453525	ENSG00000226181.1|AL132671.1|lncRNA|chr6:117453406:117453525:-	0	-
#Deleted in new
chr6	117453816	117453897	ENSG00000164465.18|DCBLD1|pc|chr6:117453816:117453897:+	0	+
#Deleted in new
chr6	117453833	117453897	ENSG00000164465.18|DCBLD1|pc|chr6:117453833:117453897:+	0	+
#Deleted in new
chr6	117464055	117464165	ENSG00000164465.18|DCBLD1|pc|chr6:117464055:117464165:+	0	+
#Deleted in new
chr6	117480345	117480470	ENSG00000164465.18|DCBLD1|pc|chr6:117480345:117480470:+	0	+
#Deleted in new
chr6	117508014	117508115	ENSG00000164465.18|DCBLD1|pc|chr6:117508014:117508115:+	0	+
#Deleted in new
chr6	117538619	117538835	ENSG00000164465.18|DCBLD1|pc|chr6:117538619:117538835:+	0	+
#Partially deleted in new
chr6	117538619	117540815	ENSG00000164465.18|DCBLD1|pc|chr6:117538619:117540815:+	0	+
#Deleted in new
chr6	117538774	117538835	ENSG00000164465.18|DCBLD1|pc|chr6:117538774:117538835:+	0	+
#Deleted in new
chr6	117539254	117539379	ENSG00000164465.18|DCBLD1|pc|chr6:117539254:117539379:+	0	+
#Deleted in new
chr6	117539308	117539379	ENSG00000164465.18|DCBLD1|pc|chr6:117539308:117539379:+	0	+
#Deleted in new
chr6	117540917	117541025	ENSG00000164465.18|DCBLD1|pc|chr6:117540917:117541025:+	0	+
#Deleted in new
chr6	11770030	11770084	ENSG00000111863.12|ADTRP|pc|chr6:11770030:11770084:-	0	-
#Deleted in new
chr6	11770030	11770089	ENSG00000111863.12|ADTRP|pc|chr6:11770030:11770089:-	0	-
#Deleted in new
chr6	11803014	11803129	ENSG00000111863.12|ADTRP|pc|chr6:11803014:11803129:-	0	-
#Deleted in new
chr6	118573990	118574068	ENSG00000111860.13|CEP85L|pc|chr6:118573990:118574068:-	0	-
#Deleted in new
chr6	118710035	118710068	ENSG00000111860.13|CEP85L|pc|chr6:118710035:118710068:-	0	-
#Deleted in new
chr6	118710035	118710075	ENSG00000111860.13|CEP85L|pc|chr6:118710035:118710075:-	0	-
#Deleted in new
chr6	119009548	119009573	ENSG00000111879.18|FAM184A|pc|chr6:119009548:119009573:-	0	-
#Deleted in new
chr6	119031404	119031541	ENSG00000253194.1|AL365275.1|lncRNA|chr6:119031404:119031541:+	0	+
#Deleted in new
chr6	11990342	11990520	ENSG00000225102.1|AL157373.1|lncRNA|chr6:11990342:11990520:-	0	-
#Partially deleted in new
chr6	12012337	12012566	ENSG00000095951.16|HIVEP1|pc|chr6:12012337:12012566:+	0	+
#Partially deleted in new
chr6	12012490	12012566	ENSG00000095951.16|HIVEP1|pc|chr6:12012490:12012566:+	0	+
#Partially deleted in new
chr6	12037725	12039245	ENSG00000095951.16|HIVEP1|pc|chr6:12037725:12039245:+	0	+
#Deleted in new
chr6	121095909	121096258	ENSG00000146350.13|TBC1D32|pc|chr6:121095909:121096258:-	0	-
#Deleted in new
chr6	121129868	121129924	ENSG00000146350.13|TBC1D32|pc|chr6:121129868:121129924:-	0	-
#Deleted in new
chr6	121139773	121139836	ENSG00000146350.13|TBC1D32|pc|chr6:121139773:121139836:-	0	-
#Deleted in new
chr6	121162969	121163062	ENSG00000146350.13|TBC1D32|pc|chr6:121162969:121163062:-	0	-
#Deleted in new
chr6	121192374	121192542	ENSG00000146350.13|TBC1D32|pc|chr6:121192374:121192542:-	0	-
#Deleted in new
chr6	121236970	121237062	ENSG00000146350.13|TBC1D32|pc|chr6:121236970:121237062:-	0	-
#Deleted in new
chr6	122436788	122439223	ENSG00000279453.1|Z99129.4|lncRNA|chr6:122436788:122439223:-	0	-
#Deleted in new
chr6	122477850	122477939	ENSG00000135549.14|PKIB|pc|chr6:122477850:122477939:+	0	+
#Partially deleted in new
chr6	122477850	122484161	ENSG00000279114.1|Z99129.3|lncRNA|chr6:122477850:122484161:+	0	+
#Deleted in new
chr6	122481898	122481956	ENSG00000135549.14|PKIB|pc|chr6:122481898:122481956:+	0	+
#Deleted in new
chr6	122482078	122482266	ENSG00000135549.14|PKIB|pc|chr6:122482078:122482266:+	0	+
#Deleted in new
chr6	122482087	122482266	ENSG00000135549.14|PKIB|pc|chr6:122482087:122482266:+	0	+
#Deleted in new
chr6	122482146	122482266	ENSG00000135549.14|PKIB|pc|chr6:122482146:122482266:+	0	+
#Deleted in new
chr6	122493221	122493475	ENSG00000135549.14|PKIB|pc|chr6:122493221:122493475:+	0	+
#Deleted in new
chr6	122585492	122585553	ENSG00000135549.14|PKIB|pc|chr6:122585492:122585553:+	0	+
#Deleted in new
chr6	122652731	122652775	ENSG00000135549.14|PKIB|pc|chr6:122652731:122652775:+	0	+
#Partially deleted in new
chr6	123063673	123072927	ENSG00000146352.12|CLVS2|pc|chr6:123063673:123072927:+	0	+
#Deleted in new
chr6	123265317	123265338	ENSG00000186439.12|TRDN|pc|chr6:123265317:123265338:-	0	-
#Deleted in new
chr6	123269848	123269866	ENSG00000186439.12|TRDN|pc|chr6:123269848:123269866:-	0	-
#Deleted in new
chr6	123316456	123316495	ENSG00000186439.12|TRDN|pc|chr6:123316456:123316495:-	0	-
#Deleted in new
chr6	123331878	123331929	ENSG00000186439.12|TRDN|pc|chr6:123331878:123331929:-	0	-
#Deleted in new
chr6	123389420	123389475	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123389420:123389475:+	0	+
#Deleted in new
chr6	123411714	123411857	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123411714:123411857:+	0	+
#Deleted in new
chr6	123418479	123418585	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123418479:123418585:+	0	+
#Deleted in new
chr6	123421583	123421648	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123421583:123421648:+	0	+
#Deleted in new
chr6	123429130	123429225	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123429130:123429225:+	0	+
#Deleted in new
chr6	123433935	123434042	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123433935:123434042:+	0	+
#Deleted in new
chr6	123445004	123445150	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123445004:123445150:+	0	+
#Deleted in new
chr6	123445004	123445161	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123445004:123445161:+	0	+
#Deleted in new
chr6	123488729	123488921	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123488729:123488921:+	0	+
#Deleted in new
chr6	123489504	123489605	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123489504:123489605:+	0	+
#Deleted in new
chr6	123509445	123509742	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123509445:123509742:+	0	+
#Deleted in new
chr6	123509445	123510241	ENSG00000235535.7|AL445259.1|lncRNA|chr6:123509445:123510241:+	0	+
#Deleted in new
chr6	123828786	123829285	ENSG00000237321.1|AL354936.1|lncRNA|chr6:123828786:123829285:+	0	+
#Deleted in new
chr6	124121849	124121941	ENSG00000188580.14|NKAIN2|pc|chr6:124121849:124121941:+	0	+
#Deleted in new
chr6	124121877	124121941	ENSG00000188580.14|NKAIN2|pc|chr6:124121877:124121941:+	0	+
#Deleted in new
chr6	124490385	124490392	ENSG00000188580.14|NKAIN2|pc|chr6:124490385:124490392:+	0	+
#Deleted in new
chr6	124920187	124920248	ENSG00000236548.1|RNF217-AS1|lncRNA|chr6:124920187:124920248:-	0	-
#Deleted in new
chr6	124935007	124935117	ENSG00000236548.1|RNF217-AS1|lncRNA|chr6:124935007:124935117:-	0	-
#Deleted in new
chr6	124945298	124945439	ENSG00000236548.1|RNF217-AS1|lncRNA|chr6:124945298:124945439:-	0	-
#Deleted in new
chr6	124971254	124971598	ENSG00000146373.16|RNF217|pc|chr6:124971254:124971598:+	0	+
#Deleted in new
chr6	124971477	124971573	ENSG00000146373.16|RNF217|pc|chr6:124971477:124971573:+	0	+
#Deleted in new
chr6	124971500	124971598	ENSG00000146373.16|RNF217|pc|chr6:124971500:124971598:+	0	+
#Deleted in new
chr6	124983363	124983521	ENSG00000146373.16|RNF217|pc|chr6:124983363:124983521:+	0	+
#Deleted in new
chr6	124983367	124983521	ENSG00000146373.16|RNF217|pc|chr6:124983367:124983521:+	0	+
#Deleted in new
chr6	124996574	124996655	ENSG00000146373.16|RNF217|pc|chr6:124996574:124996655:+	0	+
#Deleted in new
chr6	125006075	125006177	ENSG00000146373.16|RNF217|pc|chr6:125006075:125006177:+	0	+
#Deleted in new
chr6	125119048	125119388	ENSG00000111907.20|TPD52L1|pc|chr6:125119048:125119388:+	0	+
#Deleted in new
chr6	125221927	125221983	ENSG00000111906.17|HDDC2|pc|chr6:125221927:125221983:-	0	-
#Deleted in new
chr6	125234345	125234413	ENSG00000111906.17|HDDC2|pc|chr6:125234345:125234413:-	0	-
#Partially deleted in new
chr6	125297486	125297569	ENSG00000111906.17|HDDC2|pc|chr6:125297486:125297569:-	0	-
#Deleted in new
chr6	125408493	125408622	ENSG00000226409.2|AL450332.1|lncRNA|chr6:125408493:125408622:-	0	-
#Deleted in new
chr6	125425626	125425676	ENSG00000226409.2|AL450332.1|lncRNA|chr6:125425626:125425676:-	0	-
#Deleted in new
chr6	125438079	125438236	ENSG00000226409.2|AL450332.1|lncRNA|chr6:125438079:125438236:-	0	-
#Deleted in new
chr6	125645633	125645700	ENSG00000237742.6|AL365259.1|lncRNA|chr6:125645633:125645700:-	0	-
#Deleted in new
chr6	125682376	125682417	ENSG00000224506.2|LINC02523|lncRNA|chr6:125682376:125682417:+	0	+
#Deleted in new
chr6	125683641	125683679	ENSG00000224506.2|LINC02523|lncRNA|chr6:125683641:125683679:+	0	+
#Partially deleted in new
chr6	125717457	125720218	ENSG00000224506.2|LINC02523|lncRNA|chr6:125717457:125720218:+	0	+
#Partially deleted in new
chr6	125718235	125720507	ENSG00000237742.6|AL365259.1|lncRNA|chr6:125718235:125720507:-	0	-
#Deleted in new
chr6	125720342	125720507	ENSG00000237742.6|AL365259.1|lncRNA|chr6:125720342:125720507:-	0	-
#Deleted in new
chr6	125720423	125720507	ENSG00000237742.6|AL365259.1|lncRNA|chr6:125720423:125720507:-	0	-
#Deleted in new
chr6	125796679	125796797	ENSG00000111912.19|NCOA7|pc|chr6:125796679:125796797:+	0	+
#Deleted in new
chr6	125899908	125900021	ENSG00000111912.19|NCOA7|pc|chr6:125899908:125900021:+	0	+
#Deleted in new
chr6	126008656	126008745	ENSG00000066651.18|TRMT11|pc|chr6:126008656:126008745:+	0	+
#Deleted in new
chr6	126198798	126198875	ENSG00000231842.1|AC020559.1|lncRNA|chr6:126198798:126198875:+	0	+
#Deleted in new
chr6	126199749	126199900	ENSG00000231842.1|AC020559.1|lncRNA|chr6:126199749:126199900:+	0	+
#Deleted in new
chr6	126202027	126202239	ENSG00000231842.1|AC020559.1|lncRNA|chr6:126202027:126202239:+	0	+
#Deleted in new
chr6	127282286	127282395	ENSG00000118518.15|RNF146|pc|chr6:127282286:127282395:+	0	+
#Deleted in new
chr6	127294503	127294744	ENSG00000093144.18|ECHDC1|pc|chr6:127294503:127294744:-	0	-
#Deleted in new
chr6	127313065	127313591	ENSG00000093144.18|ECHDC1|pc|chr6:127313065:127313591:-	0	-
#Deleted in new
chr6	127326495	127326574	ENSG00000093144.18|ECHDC1|pc|chr6:127326495:127326574:-	0	-
#Deleted in new
chr6	127331829	127331867	ENSG00000093144.18|ECHDC1|pc|chr6:127331829:127331867:-	0	-
#Deleted in new
chr6	127341568	127341638	ENSG00000093144.18|ECHDC1|pc|chr6:127341568:127341638:-	0	-
#Deleted in new
chr6	127342355	127342407	ENSG00000093144.18|ECHDC1|pc|chr6:127342355:127342407:-	0	-
#Deleted in new
chr6	127342355	127342875	ENSG00000093144.18|ECHDC1|pc|chr6:127342355:127342875:-	0	-
#Deleted in new
chr6	127342960	127343346	ENSG00000093144.18|ECHDC1|pc|chr6:127342960:127343346:-	0	-
#Deleted in new
chr6	127343335	127343348	ENSG00000093144.18|ECHDC1|pc|chr6:127343335:127343348:-	0	-
#Deleted in new
chr6	127343335	127343358	ENSG00000093144.18|ECHDC1|pc|chr6:127343335:127343358:-	0	-
#Deleted in new
chr6	127343335	127343359	ENSG00000093144.18|ECHDC1|pc|chr6:127343335:127343359:-	0	-
#Deleted in new
chr6	127343335	127343398	ENSG00000093144.18|ECHDC1|pc|chr6:127343335:127343398:-	0	-
#Deleted in new
chr6	127343335	127343549	ENSG00000093144.18|ECHDC1|pc|chr6:127343335:127343549:-	0	-
#Deleted in new
chr6	127343335	127343562	ENSG00000093144.18|ECHDC1|pc|chr6:127343335:127343562:-	0	-
#Deleted in new
chr6	127343335	127343599	ENSG00000093144.18|ECHDC1|pc|chr6:127343335:127343599:-	0	-
#Deleted in new
chr6	127343335	127343607	ENSG00000093144.18|ECHDC1|pc|chr6:127343335:127343607:-	0	-
#Deleted in new
chr6	127343335	127343609	ENSG00000093144.18|ECHDC1|pc|chr6:127343335:127343609:-	0	-
#Deleted in new
chr6	127522013	127522063	ENSG00000184530.8|C6orf58|pc|chr6:127522013:127522063:+	0	+
#Deleted in new
chr6	127570752	127570828	ENSG00000184530.8|C6orf58|pc|chr6:127570752:127570828:+	0	+
#Deleted in new
chr6	127664553	127664632	ENSG00000281248.1|LINC02536|lncRNA|chr6:127664553:127664632:+	0	+
#Deleted in new
chr6	127665342	127665461	ENSG00000281248.1|LINC02536|lncRNA|chr6:127665342:127665461:+	0	+
#Deleted in new
chr6	127680351	127680553	ENSG00000281248.1|LINC02536|lncRNA|chr6:127680351:127680553:+	0	+
#Deleted in new
chr6	127681330	127681555	ENSG00000281248.1|LINC02536|lncRNA|chr6:127681330:127681555:+	0	+
#Deleted in new
chr6	127807215	127807332	ENSG00000172673.10|THEMIS|pc|chr6:127807215:127807332:-	0	-
#Deleted in new
chr6	127918427	127918540	ENSG00000172673.10|THEMIS|pc|chr6:127918427:127918540:-	0	-
#Partially deleted in new
chr6	127918427	127918597	ENSG00000172673.10|THEMIS|pc|chr6:127918427:127918597:-	0	-
#Deleted in new
chr6	128235379	128235604	ENSG00000152894.14|PTPRK|pc|chr6:128235379:128235604:-	0	-
#Deleted in new
chr6	128241222	128241299	ENSG00000152894.14|PTPRK|pc|chr6:128241222:128241299:-	0	-
#Deleted in new
chr6	128501003	128501176	ENSG00000224733.1|AL034349.1|lncRNA|chr6:128501003:128501176:+	0	+
#Deleted in new
chr6	12933632	12934000	ENSG00000112137.17|PHACTR1|pc|chr6:12933632:12934000:+	0	+
#Deleted in new
chr6	129532915	129532969	ENSG00000226149.5|AL356124.1|lncRNA|chr6:129532915:129532969:-	0	-
#Deleted in new
chr6	129546394	129546492	ENSG00000226149.5|AL356124.1|lncRNA|chr6:129546394:129546492:-	0	-
#Deleted in new
chr6	129546394	129546628	ENSG00000226149.5|AL356124.1|lncRNA|chr6:129546394:129546628:-	0	-
#Deleted in new
chr6	129552541	129552587	ENSG00000226149.5|AL356124.1|lncRNA|chr6:129552541:129552587:-	0	-
#Deleted in new
chr6	129596788	129596875	ENSG00000146376.10|ARHGAP18|pc|chr6:129596788:129596875:-	0	-
#Deleted in new
chr6	130013698	130013720	ENSG00000198945.7|L3MBTL3|pc|chr6:130013698:130013720:+	0	+
#Deleted in new
chr6	130137635	130138196	ENSG00000227678.7|AL355581.1|lncRNA|chr6:130137635:130138196:-	0	-
#Deleted in new
chr6	130137944	130138466	ENSG00000227678.7|AL355581.1|lncRNA|chr6:130137944:130138466:-	0	-
#Deleted in new
chr6	130142683	130142813	ENSG00000227678.7|AL355581.1|lncRNA|chr6:130142683:130142813:-	0	-
#Deleted in new
chr6	130142683	130143203	ENSG00000227678.7|AL355581.1|lncRNA|chr6:130142683:130143203:-	0	-
#Deleted in new
chr6	130142751	130142813	ENSG00000227678.7|AL355581.1|lncRNA|chr6:130142751:130142813:-	0	-
#Deleted in new
chr6	130143009	130143116	ENSG00000227678.7|AL355581.1|lncRNA|chr6:130143009:130143116:-	0	-
#Partially deleted in new
chr6	130159531	130162275	ENSG00000164483.16|SAMD3|pc|chr6:130159531:130162275:-	0	-
#Deleted in new
chr6	130221525	130221775	ENSG00000164483.16|SAMD3|pc|chr6:130221525:130221775:-	0	-
#Deleted in new
chr6	130221636	130221775	ENSG00000164483.16|SAMD3|pc|chr6:130221636:130221775:-	0	-
#Deleted in new
chr6	130222693	130222813	ENSG00000164483.16|SAMD3|pc|chr6:130222693:130222813:-	0	-
#Deleted in new
chr6	130222693	130222954	ENSG00000164483.16|SAMD3|pc|chr6:130222693:130222954:-	0	-
#Deleted in new
chr6	130286176	130286245	ENSG00000164483.16|SAMD3|pc|chr6:130286176:130286245:-	0	-
#Deleted in new
chr6	130385172	130385236	ENSG00000164484.11|TMEM200A|pc|chr6:130385172:130385236:+	0	+
#Deleted in new
chr6	130421095	130421358	ENSG00000164484.11|TMEM200A|pc|chr6:130421095:130421358:+	0	+
#Partially deleted in new
chr6	131137377	131137751	ENSG00000118507.15|AKAP7|pc|chr6:131137377:131137751:+	0	+
#Deleted in new
chr6	131199990	131200062	ENSG00000118507.15|AKAP7|pc|chr6:131199990:131200062:+	0	+
#Deleted in new
chr6	131638446	131638576	ENSG00000154269.14|ENPP3|pc|chr6:131638446:131638576:+	0	+
#Deleted in new
chr6	131638450	131638576	ENSG00000154269.14|ENPP3|pc|chr6:131638450:131638576:+	0	+
#Partially deleted in new
chr6	131876991	131877857	ENSG00000197594.11|ENPP1|pc|chr6:131876991:131877857:+	0	+
#Deleted in new
chr6	131901962	131902151	ENSG00000236673.5|AL117378.1|lncRNA|chr6:131901962:131902151:+	0	+
#Deleted in new
chr6	131901963	131902151	ENSG00000236673.5|AL117378.1|lncRNA|chr6:131901963:131902151:+	0	+
#Deleted in new
chr6	131903647	131904234	ENSG00000236673.5|AL117378.1|lncRNA|chr6:131903647:131904234:+	0	+
#Deleted in new
chr6	131903946	131904234	ENSG00000236673.5|AL117378.1|lncRNA|chr6:131903946:131904234:+	0	+
#Deleted in new
chr6	131907405	131907530	ENSG00000236673.5|AL117378.1|lncRNA|chr6:131907405:131907530:+	0	+
#Partially deleted in new
chr6	131910190	131911527	ENSG00000280058.1|AL117378.2|lncRNA|chr6:131910190:131911527:+	0	+
#Deleted in new
chr6	131918449	131920565	ENSG00000236673.5|AL117378.1|lncRNA|chr6:131918449:131920565:+	0	+
#Deleted in new
chr6	132090532	132090726	ENSG00000236166.1|AL021408.1|lncRNA|chr6:132090532:132090726:+	0	+
#Deleted in new
chr6	132160763	132160914	ENSG00000228495.1|LINC01013|lncRNA|chr6:132160763:132160914:+	0	+
#Deleted in new
chr6	132160764	132160914	ENSG00000228495.1|LINC01013|lncRNA|chr6:132160764:132160914:+	0	+
#Deleted in new
chr6	132163896	132164491	ENSG00000228495.1|LINC01013|lncRNA|chr6:132163896:132164491:+	0	+
#Partially deleted in new
chr6	13230173	13230404	ENSG00000112137.17|PHACTR1|pc|chr6:13230173:13230404:+	0	+
#Deleted in new
chr6	132325079	132325147	ENSG00000079931.14|MOXD1|pc|chr6:132325079:132325147:-	0	-
#Deleted in new
chr6	132461713	132461860	ENSG00000079950.13|STX7|pc|chr6:132461713:132461860:-	0	-
#Deleted in new
chr6	13264860	13265021	ENSG00000215022.7|AL008729.1|lncRNA|chr6:13264860:13265021:-	0	-
#Deleted in new
chr6	13266541	13267835	ENSG00000145979.17|TBC1D7|pc|chr6:13266541:13267835:-	0	-
#Deleted in new
chr6	13267495	13267835	ENSG00000215022.7|AL008729.1|lncRNA|chr6:13267495:13267835:-	0	-
#Partially deleted in new
chr6	132743869	132744491	ENSG00000112303.13|VNN2|pc|chr6:132743869:132744491:-	0	-
#Partially deleted in new
chr6	132743894	132744491	ENSG00000112303.13|VNN2|pc|chr6:132743894:132744491:-	0	-
#Partially deleted in new
chr6	132744025	132744491	ENSG00000112303.13|VNN2|pc|chr6:132744025:132744491:-	0	-
#Duplicated in new
chr6	132751144	132751514	ENSG00000112303.13|VNN2|pc|chr6:132751144:132751514:-	0	-
#Duplicated in new
chr6	132751144	132751518	ENSG00000112303.13|VNN2|pc|chr6:132751144:132751518:-	0	-
#Partially deleted in new
chr6	132752674	132753151	ENSG00000234484.1|AL032821.1|lncRNA|chr6:132752674:132753151:+	0	+
#Partially deleted in new
chr6	132752723	132752749	ENSG00000112303.13|VNN2|pc|chr6:132752723:132752749:-	0	-
#Deleted in new
chr6	132753417	132753491	ENSG00000112303.13|VNN2|pc|chr6:132753417:132753491:-	0	-
#Deleted in new
chr6	132753452	132753561	ENSG00000112303.13|VNN2|pc|chr6:132753452:132753561:-	0	-
#Deleted in new
chr6	132753827	132753949	ENSG00000112303.13|VNN2|pc|chr6:132753827:132753949:-	0	-
#Deleted in new
chr6	132753847	132753951	ENSG00000234484.1|AL032821.1|lncRNA|chr6:132753847:132753951:+	0	+
#Deleted in new
chr6	132753875	132753949	ENSG00000112303.13|VNN2|pc|chr6:132753875:132753949:-	0	-
#Deleted in new
chr6	132760631	132760803	ENSG00000112303.13|VNN2|pc|chr6:132760631:132760803:-	0	-
#Deleted in new
chr6	132763382	132763430	ENSG00000112303.13|VNN2|pc|chr6:132763382:132763430:-	0	-
#Deleted in new
chr6	132763382	132763431	ENSG00000112303.13|VNN2|pc|chr6:132763382:132763431:-	0	-
#Deleted in new
chr6	132763382	132763447	ENSG00000112303.13|VNN2|pc|chr6:132763382:132763447:-	0	-
#Deleted in new
chr6	132763382	132763455	ENSG00000112303.13|VNN2|pc|chr6:132763382:132763455:-	0	-
#Deleted in new
chr6	132763382	132763459	ENSG00000112303.13|VNN2|pc|chr6:132763382:132763459:-	0	-
#Deleted in new
chr6	132789453	132789529	ENSG00000146409.10|SLC18B1|pc|chr6:132789453:132789529:-	0	-
#Deleted in new
chr6	13280959	13281156	ENSG00000215022.7|AL008729.1|lncRNA|chr6:13280959:13281156:-	0	-
#Deleted in new
chr6	13281428	13281553	ENSG00000145979.17|TBC1D7|pc|chr6:13281428:13281553:-	0	-
#Deleted in new
chr6	13281428	13281553	ENSG00000215022.7|AL008729.1|lncRNA|chr6:13281428:13281553:-	0	-
#Deleted in new
chr6	13294795	13294898	ENSG00000145979.17|TBC1D7|pc|chr6:13294795:13294898:-	0	-
#Deleted in new
chr6	13294795	13294898	ENSG00000215022.7|AL008729.1|lncRNA|chr6:13294795:13294898:-	0	-
#Deleted in new
chr6	13295274	13295311	ENSG00000215022.7|AL008729.1|lncRNA|chr6:13295274:13295311:-	0	-
#Deleted in new
chr6	13295274	13295388	ENSG00000215022.7|AL008729.1|lncRNA|chr6:13295274:13295388:-	0	-
#Deleted in new
chr6	13295485	13295586	ENSG00000215022.7|AL008729.1|lncRNA|chr6:13295485:13295586:-	0	-
#Partially deleted in new
chr6	133088079	133088577	ENSG00000231023.6|LINC00326|lncRNA|chr6:133088079:133088577:+	0	+
#Deleted in new
chr6	133096509	133096563	ENSG00000231023.6|LINC00326|lncRNA|chr6:133096509:133096563:+	0	+
#Deleted in new
chr6	133106094	133106198	ENSG00000231023.6|LINC00326|lncRNA|chr6:133106094:133106198:+	0	+
#Deleted in new
chr6	13318097	13318193	ENSG00000145979.17|TBC1D7|pc|chr6:13318097:13318193:-	0	-
#Partially deleted in new
chr6	13318717	13321095	ENSG00000145979.17|TBC1D7|pc|chr6:13318717:13321095:-	0	-
#Deleted in new
chr6	133325210	133325414	ENSG00000112319.17|EYA4|pc|chr6:133325210:133325414:+	0	+
#Deleted in new
chr6	133363168	133363409	ENSG00000112319.17|EYA4|pc|chr6:133363168:133363409:+	0	+
#Deleted in new
chr6	133439327	133439464	ENSG00000223542.1|AL024497.1|lncRNA|chr6:133439327:133439464:-	0	-
#Deleted in new
chr6	133507243	133507321	ENSG00000227954.6|TARID|lncRNA|chr6:133507243:133507321:-	0	-
#Deleted in new
chr6	133511674	133511728	ENSG00000227954.6|TARID|lncRNA|chr6:133511674:133511728:-	0	-
#Deleted in new
chr6	133537173	133537358	ENSG00000227954.6|TARID|lncRNA|chr6:133537173:133537358:-	0	-
#Deleted in new
chr6	133537212	133537358	ENSG00000227954.6|TARID|lncRNA|chr6:133537212:133537358:-	0	-
#Deleted in new
chr6	133537310	133537358	ENSG00000227954.6|TARID|lncRNA|chr6:133537310:133537358:-	0	-
#Deleted in new
chr6	133538071	133538192	ENSG00000227954.6|TARID|lncRNA|chr6:133538071:133538192:-	0	-
#Deleted in new
chr6	133568189	133568248	ENSG00000227954.6|TARID|lncRNA|chr6:133568189:133568248:-	0	-
#Deleted in new
chr6	133568193	133568248	ENSG00000227954.6|TARID|lncRNA|chr6:133568193:133568248:-	0	-
#Partially deleted in new
chr6	133821146	133821735	ENSG00000223586.5|LINC01312|lncRNA|chr6:133821146:133821735:+	0	+
#Deleted in new
chr6	133837183	133837222	ENSG00000223586.5|LINC01312|lncRNA|chr6:133837183:133837222:+	0	+
#Partially deleted in new
chr6	133952169	133952730	ENSG00000028839.9|TBPL1|pc|chr6:133952169:133952730:+	0	+
#Partially deleted in new
chr6	133952285	133952730	ENSG00000028839.9|TBPL1|pc|chr6:133952285:133952730:+	0	+
#Deleted in new
chr6	133968854	133968957	ENSG00000028839.9|TBPL1|pc|chr6:133968854:133968957:+	0	+
#Deleted in new
chr6	133985883	133985968	ENSG00000028839.9|TBPL1|pc|chr6:133985883:133985968:+	0	+
#Deleted in new
chr6	134180254	134180343	ENSG00000118515.11|SGK1|pc|chr6:134180254:134180343:-	0	-
#Deleted in new
chr6	134214944	134215093	ENSG00000118515.11|SGK1|pc|chr6:134214944:134215093:-	0	-
#Deleted in new
chr6	134214953	134215093	ENSG00000118515.11|SGK1|pc|chr6:134214953:134215093:-	0	-
#Deleted in new
chr6	134218680	134218772	ENSG00000118515.11|SGK1|pc|chr6:134218680:134218772:-	0	-
#Deleted in new
chr6	134230399	134230467	ENSG00000118515.11|SGK1|pc|chr6:134230399:134230467:-	0	-
#Deleted in new
chr6	134230399	134230481	ENSG00000118515.11|SGK1|pc|chr6:134230399:134230481:-	0	-
#Deleted in new
chr6	134428239	134429215	ENSG00000231971.5|AL078590.2|lncRNA|chr6:134428239:134429215:-	0	-
#Partially deleted in new
chr6	134447429	134447800	ENSG00000231971.5|AL078590.2|lncRNA|chr6:134447429:134447800:-	0	-
#Deleted in new
chr6	134447933	134448001	ENSG00000231971.5|AL078590.2|lncRNA|chr6:134447933:134448001:-	0	-
#Deleted in new
chr6	134475115	134475225	ENSG00000231971.5|AL078590.2|lncRNA|chr6:134475115:134475225:-	0	-
#Deleted in new
chr6	134476629	134476930	ENSG00000236700.5|LINC01010|lncRNA|chr6:134476629:134476930:+	0	+
#Deleted in new
chr6	134520508	134520585	ENSG00000231971.5|AL078590.2|lncRNA|chr6:134520508:134520585:-	0	-
#Deleted in new
chr6	134528822	134528942	ENSG00000232310.6|AL078590.3|lncRNA|chr6:134528822:134528942:-	0	-
#Deleted in new
chr6	134534438	134534669	ENSG00000232310.6|AL078590.3|lncRNA|chr6:134534438:134534669:-	0	-
#Deleted in new
chr6	134606298	134606436	ENSG00000229722.1|AL078590.1|lncRNA|chr6:134606298:134606436:-	0	-
#Deleted in new
chr6	134659748	134659836	ENSG00000232310.6|AL078590.3|lncRNA|chr6:134659748:134659836:-	0	-
#Partially deleted in new
chr6	134706059	134706898	ENSG00000236389.1|AL121970.1|lncRNA|chr6:134706059:134706898:-	0	-
#Deleted in new
chr6	13471980	13472044	ENSG00000145990.10|GFOD1|pc|chr6:13471980:13472044:-	0	-
#Deleted in new
chr6	134940180	134940221	ENSG00000118514.13|ALDH8A1|pc|chr6:134940180:134940221:-	0	-
#Deleted in new
chr6	134941391	134941438	ENSG00000240056.2|AL445190.1|lncRNA|chr6:134941391:134941438:+	0	+
#Deleted in new
chr6	135026853	135026863	ENSG00000112339.14|HBS1L|pc|chr6:135026853:135026863:-	0	-
#Deleted in new
chr6	135026853	135027196	ENSG00000112339.14|HBS1L|pc|chr6:135026853:135027196:-	0	-
#Deleted in new
chr6	135027066	135027156	ENSG00000112339.14|HBS1L|pc|chr6:135027066:135027156:-	0	-
#Deleted in new
chr6	135027066	135027195	ENSG00000112339.14|HBS1L|pc|chr6:135027066:135027195:-	0	-
#Partially deleted in new
chr6	135202413	135202669	ENSG00000118513.18|MYB|pc|chr6:135202413:135202669:+	0	+
#Partially deleted in new
chr6	135202413	135202673	ENSG00000118513.18|MYB|pc|chr6:135202413:135202673:+	0	+
#Deleted in new
chr6	135259995	135260093	ENSG00000224374.1|AL023693.1|lncRNA|chr6:135259995:135260093:+	0	+
#Deleted in new
chr6	135260815	135260933	ENSG00000224374.1|AL023693.1|lncRNA|chr6:135260815:135260933:+	0	+
#Deleted in new
chr6	135297431	135297492	ENSG00000135541.20|AHI1|pc|chr6:135297431:135297492:-	0	-
#Deleted in new
chr6	135305033	135305163	ENSG00000234084.1|AL049552.1|lncRNA|chr6:135305033:135305163:+	0	+
#Deleted in new
chr6	135435156	135435232	ENSG00000135541.20|AHI1|pc|chr6:135435156:135435232:-	0	-
#Deleted in new
chr6	135467580	135467634	ENSG00000135541.20|AHI1|pc|chr6:135467580:135467634:-	0	-
#Deleted in new
chr6	135489916	135490225	ENSG00000135541.20|AHI1|pc|chr6:135489916:135490225:-	0	-
#Deleted in new
chr6	135490457	135490747	ENSG00000135541.20|AHI1|pc|chr6:135490457:135490747:-	0	-
#Deleted in new
chr6	135490459	135490747	ENSG00000135541.20|AHI1|pc|chr6:135490459:135490747:-	0	-
#Deleted in new
chr6	135490622	135490747	ENSG00000135541.20|AHI1|pc|chr6:135490622:135490747:-	0	-
#Deleted in new
chr6	135492227	135492291	ENSG00000135541.20|AHI1|pc|chr6:135492227:135492291:-	0	-
#Deleted in new
chr6	135492227	135492378	ENSG00000135541.20|AHI1|pc|chr6:135492227:135492378:-	0	-
#Deleted in new
chr6	135492251	135492291	ENSG00000135541.20|AHI1|pc|chr6:135492251:135492291:-	0	-
#Deleted in new
chr6	135495312	135495640	ENSG00000135541.20|AHI1|pc|chr6:135495312:135495640:-	0	-
#Deleted in new
chr6	135495538	135495709	ENSG00000135541.20|AHI1|pc|chr6:135495538:135495709:-	0	-
#Deleted in new
chr6	135495813	135495898	ENSG00000135541.20|AHI1|pc|chr6:135495813:135495898:-	0	-
#Deleted in new
chr6	135497187	135497249	ENSG00000135541.20|AHI1|pc|chr6:135497187:135497249:-	0	-
#Deleted in new
chr6	135497582	135497649	ENSG00000135541.20|AHI1|pc|chr6:135497582:135497649:-	0	-
#Deleted in new
chr6	135497582	135497737	ENSG00000135541.20|AHI1|pc|chr6:135497582:135497737:-	0	-
#Deleted in new
chr6	135497582	135497740	ENSG00000135541.20|AHI1|pc|chr6:135497582:135497740:-	0	-
#Deleted in new
chr6	135497582	135497745	ENSG00000135541.20|AHI1|pc|chr6:135497582:135497745:-	0	-
#Deleted in new
chr6	135497582	135497765	ENSG00000135541.20|AHI1|pc|chr6:135497582:135497765:-	0	-
#Deleted in new
chr6	135497582	135497776	ENSG00000135541.20|AHI1|pc|chr6:135497582:135497776:-	0	-
#Deleted in new
chr6	135497800	135498000	ENSG00000231028.8|LINC00271|lncRNA|chr6:135497800:135498000:+	0	+
#Deleted in new
chr6	135497805	135498000	ENSG00000231028.8|LINC00271|lncRNA|chr6:135497805:135498000:+	0	+
#Deleted in new
chr6	135497853	135498000	ENSG00000231028.8|LINC00271|lncRNA|chr6:135497853:135498000:+	0	+
#Deleted in new
chr6	135497936	135498000	ENSG00000231028.8|LINC00271|lncRNA|chr6:135497936:135498000:+	0	+
#Deleted in new
chr6	135497955	135498000	ENSG00000231028.8|LINC00271|lncRNA|chr6:135497955:135498000:+	0	+
#Deleted in new
chr6	135497968	135498000	ENSG00000231028.8|LINC00271|lncRNA|chr6:135497968:135498000:+	0	+
#Deleted in new
chr6	135498403	135498517	ENSG00000231028.8|LINC00271|lncRNA|chr6:135498403:135498517:+	0	+
#Deleted in new
chr6	135499351	135499441	ENSG00000231028.8|LINC00271|lncRNA|chr6:135499351:135499441:+	0	+
#Deleted in new
chr6	135516880	135517059	ENSG00000231028.8|LINC00271|lncRNA|chr6:135516880:135517059:+	0	+
#Deleted in new
chr6	135518592	135518789	ENSG00000231028.8|LINC00271|lncRNA|chr6:135518592:135518789:+	0	+
#Deleted in new
chr6	135518592	135518830	ENSG00000231028.8|LINC00271|lncRNA|chr6:135518592:135518830:+	0	+
#Deleted in new
chr6	135520891	135521149	ENSG00000231028.8|LINC00271|lncRNA|chr6:135520891:135521149:+	0	+
#Deleted in new
chr6	135629404	135629623	ENSG00000233534.1|AL035604.1|lncRNA|chr6:135629404:135629623:-	0	-
#Deleted in new
chr6	135642192	135642276	ENSG00000231028.8|LINC00271|lncRNA|chr6:135642192:135642276:+	0	+
#Partially deleted in new
chr6	135642192	135642955	ENSG00000231028.8|LINC00271|lncRNA|chr6:135642192:135642955:+	0	+
#Deleted in new
chr6	135672293	135672429	ENSG00000231028.8|LINC00271|lncRNA|chr6:135672293:135672429:+	0	+
#Deleted in new
chr6	135672313	135672429	ENSG00000231028.8|LINC00271|lncRNA|chr6:135672313:135672429:+	0	+
#Deleted in new
chr6	135689622	135689736	ENSG00000231028.8|LINC00271|lncRNA|chr6:135689622:135689736:+	0	+
#Deleted in new
chr6	135689622	135690835	ENSG00000231028.8|LINC00271|lncRNA|chr6:135689622:135690835:+	0	+
#Deleted in new
chr6	135715821	135716055	ENSG00000231028.8|LINC00271|lncRNA|chr6:135715821:135716055:+	0	+
#Partially deleted in new
chr6	13574583	13574624	ENSG00000124523.15|SIRT5|pc|chr6:13574583:13574624:+	0	+
#Partially deleted in new
chr6	13574593	13574624	ENSG00000124523.15|SIRT5|pc|chr6:13574593:13574624:+	0	+
#Deleted in new
chr6	13574598	13574624	ENSG00000124523.15|SIRT5|pc|chr6:13574598:13574624:+	0	+
#Deleted in new
chr6	13574600	13574624	ENSG00000124523.15|SIRT5|pc|chr6:13574600:13574624:+	0	+
#Deleted in new
chr6	13574642	13574744	ENSG00000124523.15|SIRT5|pc|chr6:13574642:13574744:+	0	+
#Deleted in new
chr6	13579450	13579609	ENSG00000124523.15|SIRT5|pc|chr6:13579450:13579609:+	0	+
#Deleted in new
chr6	13584986	13585127	ENSG00000124523.15|SIRT5|pc|chr6:13584986:13585127:+	0	+
#Partially deleted in new
chr6	13589059	13589543	ENSG00000124523.15|SIRT5|pc|chr6:13589059:13589543:+	0	+
#Deleted in new
chr6	136012630	136012713	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136012630:136012713:-	0	-
#Duplicated in new
chr6	136034030	136035295	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136034030:136035295:-	0	-
#Deleted in new
chr6	13604475	13605739	ENSG00000124523.15|SIRT5|pc|chr6:13604475:13605739:+	0	+
#Deleted in new
chr6	136046262	136046377	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136046262:136046377:-	0	-
#Partially deleted in new
chr6	136049016	136049445	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136049016:136049445:-	0	-
#Deleted in new
chr6	136094027	136094186	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136094027:136094186:-	0	-
#Deleted in new
chr6	136094027	136094200	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136094027:136094200:-	0	-
#Deleted in new
chr6	136094027	136094247	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136094027:136094247:-	0	-
#Deleted in new
chr6	136097997	136098043	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136097997:136098043:-	0	-
#Deleted in new
chr6	136097997	136098072	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136097997:136098072:-	0	-
#Deleted in new
chr6	136117069	136117172	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136117069:136117172:-	0	-
#Partially deleted in new
chr6	13611789	13615158	ENSG00000124523.15|SIRT5|pc|chr6:13611789:13615158:+	0	+
#Deleted in new
chr6	13614110	13615155	ENSG00000261071.1|AL441883.1|lncRNA|chr6:13614110:13615155:-	0	-
#Deleted in new
chr6	136162251	136162348	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136162251:136162348:-	0	-
#Deleted in new
chr6	136165511	136165665	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136165511:136165665:-	0	-
#Deleted in new
chr6	136166319	136166400	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136166319:136166400:-	0	-
#Deleted in new
chr6	136208401	136208439	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136208401:136208439:-	0	-
#Deleted in new
chr6	136225537	136225595	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136225537:136225595:-	0	-
#Deleted in new
chr6	136225537	136225751	ENSG00000237596.6|AL138828.1|lncRNA|chr6:136225537:136225751:-	0	-
#Deleted in new
chr6	136247460	136247560	ENSG00000146410.11|MTFR2|pc|chr6:136247460:136247560:-	0	-
#Deleted in new
chr6	136247461	136247560	ENSG00000146410.11|MTFR2|pc|chr6:136247461:136247560:-	0	-
#Deleted in new
chr6	136249975	136250299	ENSG00000146410.11|MTFR2|pc|chr6:136249975:136250299:-	0	-
#Deleted in new
chr6	136249975	136250311	ENSG00000146410.11|MTFR2|pc|chr6:136249975:136250311:-	0	-
#Deleted in new
chr6	136250263	136250292	ENSG00000146410.11|MTFR2|pc|chr6:136250263:136250292:-	0	-
#Deleted in new
chr6	136250263	136250294	ENSG00000146410.11|MTFR2|pc|chr6:136250263:136250294:-	0	-
#Deleted in new
chr6	136250263	136250324	ENSG00000146410.11|MTFR2|pc|chr6:136250263:136250324:-	0	-
#Deleted in new
chr6	136250263	136250335	ENSG00000146410.11|MTFR2|pc|chr6:136250263:136250335:-	0	-
#Deleted in new
chr6	136335713	136336087	ENSG00000260418.1|AL023284.4|lncRNA|chr6:136335713:136336087:-	0	-
#Deleted in new
chr6	136584401	136584507	ENSG00000197442.9|MAP3K5|pc|chr6:136584401:136584507:-	0	-
#Deleted in new
chr6	136830006	136830260	ENSG00000112357.12|PEX7|pc|chr6:136830006:136830260:+	0	+
#Deleted in new
chr6	136870731	136870827	ENSG00000112357.12|PEX7|pc|chr6:136870731:136870827:+	0	+
#Deleted in new
chr6	136993173	136993234	ENSG00000225391.5|NHEG1|lncRNA|chr6:136993173:136993234:-	0	-
#Partially deleted in new
chr6	136999219	136999504	ENSG00000235399.1|AL135902.1|lncRNA|chr6:136999219:136999504:+	0	+
#Deleted in new
chr6	137044091	137044248	ENSG00000016402.13|IL20RA|pc|chr6:137044091:137044248:-	0	-
#Deleted in new
chr6	137044091	137044278	ENSG00000016402.13|IL20RA|pc|chr6:137044091:137044278:-	0	-
#Deleted in new
chr6	137044091	137044312	ENSG00000016402.13|IL20RA|pc|chr6:137044091:137044312:-	0	-
#Partially deleted in new
chr6	137044640	137045180	ENSG00000016402.13|IL20RA|pc|chr6:137044640:137045180:-	0	-
#Deleted in new
chr6	137156758	137156854	ENSG00000164485.14|IL22RA2|pc|chr6:137156758:137156854:-	0	-
#Partially deleted in new
chr6	137219242	137219449	ENSG00000027697.13|IFNGR1|pc|chr6:137219242:137219449:-	0	-
#Deleted in new
chr6	137673944	137674124	ENSG00000230533.2|AL357060.1|lncRNA|chr6:137673944:137674124:+	0	+
#Deleted in new
chr6	137687093	137687223	ENSG00000230533.2|AL357060.1|lncRNA|chr6:137687093:137687223:+	0	+
#Deleted in new
chr6	137693067	137693227	ENSG00000283265.1|AL356234.2|lncRNA|chr6:137693067:137693227:+	0	+
#Partially deleted in new
chr6	137738708	137738983	ENSG00000234956.5|LINC02539|lncRNA|chr6:137738708:137738983:-	0	-
#Partially deleted in new
chr6	137857285	137858045	ENSG00000237499.6|AL357060.2|lncRNA|chr6:137857285:137858045:-	0	-
#Deleted in new
chr6	137951140	137951574	ENSG00000229922.5|LINC02528|lncRNA|chr6:137951140:137951574:+	0	+
#Deleted in new
chr6	137972242	137972522	ENSG00000229922.5|LINC02528|lncRNA|chr6:137972242:137972522:+	0	+
#Deleted in new
chr6	13803729	13804315	ENSG00000050393.11|MCUR1|pc|chr6:13803729:13804315:-	0	-
#Deleted in new
chr6	13825431	13826574	ENSG00000272209.1|AL023583.1|lncRNA|chr6:13825431:13826574:+	0	+
#Deleted in new
chr6	138377904	138378183	ENSG00000262543.1|SMIM28|pc|chr6:138377904:138378183:+	0	+
#Deleted in new
chr6	138382499	138383075	ENSG00000262543.1|SMIM28|pc|chr6:138382499:138383075:+	0	+
#Partially deleted in new
chr6	138412082	138412256	ENSG00000051620.10|HEBP2|pc|chr6:138412082:138412256:+	0	+
#Partially deleted in new
chr6	138412879	138422197	ENSG00000051620.10|HEBP2|pc|chr6:138412879:138422197:+	0	+
#Deleted in new
chr6	138470540	138470594	ENSG00000135540.11|NHSL1|pc|chr6:138470540:138470594:-	0	-
#Deleted in new
chr6	138696367	138696755	ENSG00000225177.5|AL590617.2|lncRNA|chr6:138696367:138696755:+	0	+
#Deleted in new
chr6	138696596	138696755	ENSG00000225177.5|AL590617.2|lncRNA|chr6:138696596:138696755:+	0	+
#Partially deleted in new
chr6	138696596	138697288	ENSG00000225177.5|AL590617.2|lncRNA|chr6:138696596:138697288:+	0	+
#Partially deleted in new
chr6	138696902	138697288	ENSG00000225177.5|AL590617.2|lncRNA|chr6:138696902:138697288:+	0	+
#Deleted in new
chr6	138727466	138727493	ENSG00000279968.2|GVQW2|pc|chr6:138727466:138727493:-	0	-
#Deleted in new
chr6	138750127	138750269	ENSG00000279968.2|GVQW2|pc|chr6:138750127:138750269:-	0	-
#Partially deleted in new
chr6	138764256	138764378	ENSG00000279968.2|GVQW2|pc|chr6:138764256:138764378:-	0	-
#Partially deleted in new
chr6	138910922	138911371	ENSG00000135597.18|REPS1|pc|chr6:138910922:138911371:-	0	-
#Deleted in new
chr6	138951041	138951160	ENSG00000135597.18|REPS1|pc|chr6:138951041:138951160:-	0	-
#Deleted in new
chr6	139144203	139144614	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139144203:139144614:-	0	-
#Deleted in new
chr6	139144390	139144614	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139144390:139144614:-	0	-
#Deleted in new
chr6	139144476	139144614	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139144476:139144614:-	0	-
#Deleted in new
chr6	139153009	139153235	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139153009:139153235:-	0	-
#Deleted in new
chr6	139159156	139159253	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139159156:139159253:-	0	-
#Deleted in new
chr6	139159156	139159253	ENSG00000272446.5|AL158850.2|lncRNA|chr6:139159156:139159253:-	0	-
#Deleted in new
chr6	139159163	139159253	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139159163:139159253:-	0	-
#Deleted in new
chr6	139159164	139159253	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139159164:139159253:-	0	-
#Deleted in new
chr6	139182988	139183573	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139182988:139183573:-	0	-
#Deleted in new
chr6	139201674	139201783	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139201674:139201783:-	0	-
#Deleted in new
chr6	139203574	139203635	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139203574:139203635:-	0	-
#Deleted in new
chr6	139234195	139234571	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139234195:139234571:-	0	-
#Deleted in new
chr6	139237376	139237505	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139237376:139237505:-	0	-
#Deleted in new
chr6	139237379	139237505	ENSG00000231329.7|AL031772.1|lncRNA|chr6:139237379:139237505:-	0	-
#Deleted in new
chr6	139268975	139269170	ENSG00000272446.5|AL158850.2|lncRNA|chr6:139268975:139269170:-	0	-
#Deleted in new
chr6	139283103	139283166	ENSG00000226571.1|AL158850.1|lncRNA|chr6:139283103:139283166:+	0	+
#Deleted in new
chr6	139283106	139283166	ENSG00000226571.1|AL158850.1|lncRNA|chr6:139283106:139283166:+	0	+
#Deleted in new
chr6	139286844	139286902	ENSG00000226571.1|AL158850.1|lncRNA|chr6:139286844:139286902:+	0	+
#Deleted in new
chr6	139286844	139287307	ENSG00000226571.1|AL158850.1|lncRNA|chr6:139286844:139287307:+	0	+
#Deleted in new
chr6	139287009	139287307	ENSG00000226571.1|AL158850.1|lncRNA|chr6:139287009:139287307:+	0	+
#Deleted in new
chr6	13961479	13961562	ENSG00000180537.12|RNF182|pc|chr6:13961479:13961562:+	0	+
#Deleted in new
chr6	13974209	13974364	ENSG00000180537.12|RNF182|pc|chr6:13974209:13974364:+	0	+
#Partially deleted in new
chr6	139854849	139854977	ENSG00000231426.5|AL050338.2|lncRNA|chr6:139854849:139854977:+	0	+
#Deleted in new
chr6	139854918	139854951	ENSG00000231426.5|AL050338.2|lncRNA|chr6:139854918:139854951:+	0	+
#Deleted in new
chr6	140092990	140093665	ENSG00000236013.5|AL138737.1|lncRNA|chr6:140092990:140093665:+	0	+
#Deleted in new
chr6	140092990	140093721	ENSG00000236013.5|AL138737.1|lncRNA|chr6:140092990:140093721:+	0	+
#Deleted in new
chr6	140845957	140846304	ENSG00000234147.1|AL035446.1|lncRNA|chr6:140845957:140846304:-	0	-
#Deleted in new
chr6	142058329	142058463	ENSG00000135577.4|NMBR|pc|chr6:142058329:142058463:-	0	-
#Deleted in new
chr6	142259403	142259632	ENSG00000237494.1|AL360007.1|lncRNA|chr6:142259403:142259632:-	0	-
#Deleted in new
chr6	14229774	14230201	ENSG00000230631.1|AL353152.1|lncRNA|chr6:14229774:14230201:-	0	-
#Deleted in new
chr6	142544806	142544993	ENSG00000236366.2|AL359313.1|lncRNA|chr6:142544806:142544993:-	0	-
#Deleted in new
chr6	142779542	142779592	ENSG00000010818.9|HIVEP2|pc|chr6:142779542:142779592:-	0	-
#Partially deleted in new
chr6	142788122	142788444	ENSG00000237851.1|AL023584.2|lncRNA|chr6:142788122:142788444:+	0	+
#Partially deleted in new
chr6	142793964	142794086	ENSG00000237851.1|AL023584.2|lncRNA|chr6:142793964:142794086:+	0	+
#Deleted in new
chr6	142956418	142956646	ENSG00000232618.1|AL355304.1|lncRNA|chr6:142956418:142956646:+	0	+
#Deleted in new
chr6	142956443	142956698	ENSG00000010818.9|HIVEP2|pc|chr6:142956443:142956698:-	0	-
#Deleted in new
chr6	142966420	142967441	ENSG00000229017.6|LINC01277|lncRNA|chr6:142966420:142967441:-	0	-
#Deleted in new
chr6	142967032	142967441	ENSG00000229017.6|LINC01277|lncRNA|chr6:142967032:142967441:-	0	-
#Deleted in new
chr6	142986044	142986130	ENSG00000229017.6|LINC01277|lncRNA|chr6:142986044:142986130:-	0	-
#Deleted in new
chr6	143021665	143021953	ENSG00000229017.6|LINC01277|lncRNA|chr6:143021665:143021953:-	0	-
#Deleted in new
chr6	143036988	143038077	ENSG00000229017.6|LINC01277|lncRNA|chr6:143036988:143038077:-	0	-
#Deleted in new
chr6	143039424	143039828	ENSG00000227192.1|AL023581.2|lncRNA|chr6:143039424:143039828:-	0	-
#Deleted in new
chr6	143042176	143042324	ENSG00000227192.1|AL023581.2|lncRNA|chr6:143042176:143042324:-	0	-
#Deleted in new
chr6	143094033	143094326	ENSG00000225752.1|AL023581.1|lncRNA|chr6:143094033:143094326:-	0	-
#Deleted in new
chr6	143335050	143335530	ENSG00000146416.17|AIG1|pc|chr6:143335050:143335530:+	0	+
#Deleted in new
chr6	143441437	143441977	ENSG00000189007.15|ADAT2|pc|chr6:143441437:143441977:-	0	-
#Deleted in new
chr6	143503393	143503514	ENSG00000278206.1|AL031320.2|lncRNA|chr6:143503393:143503514:+	0	+
#Deleted in new
chr6	143505339	143505457	ENSG00000278206.1|AL031320.2|lncRNA|chr6:143505339:143505457:+	0	+
#Partially deleted in new
chr6	143561166	143561468	ENSG00000235740.1|PHACTR2-AS1|lncRNA|chr6:143561166:143561468:-	0	-
#Deleted in new
chr6	143561884	143562031	ENSG00000235740.1|PHACTR2-AS1|lncRNA|chr6:143561884:143562031:-	0	-
#Deleted in new
chr6	143835650	143835894	ENSG00000257065.1|AL049844.1|pc|chr6:143835650:143835894:+	0	+
#Deleted in new
chr6	14392303	14392382	ENSG00000237346.1|AL080313.2|lncRNA|chr6:14392303:14392382:-	0	-
#Partially deleted in new
chr6	143948246	143948460	ENSG00000118495.18|PLAGL1|pc|chr6:143948246:143948460:-	0	-
#Partially deleted in new
chr6	143948259	143948460	ENSG00000118495.18|PLAGL1|pc|chr6:143948259:143948460:-	0	-
#Partially deleted in new
chr6	143948343	143948460	ENSG00000118495.18|PLAGL1|pc|chr6:143948343:143948460:-	0	-
#Partially deleted in new
chr6	14395052	14395271	ENSG00000234540.1|AL080313.1|lncRNA|chr6:14395052:14395271:+	0	+
#Deleted in new
chr6	143965179	143965303	ENSG00000118495.18|PLAGL1|pc|chr6:143965179:143965303:-	0	-
#Deleted in new
chr6	144311698	144312093	ENSG00000225311.1|AL024474.2|lncRNA|chr6:144311698:144312093:-	0	-
#Deleted in new
chr6	144799380	144799473	ENSG00000152818.18|UTRN|pc|chr6:144799380:144799473:+	0	+
#Partially deleted in new
chr6	145382534	145384097	ENSG00000112425.14|EPM2A|pc|chr6:145382534:145384097:-	0	-
#Partially deleted in new
chr6	145671238	145671399	ENSG00000112425.14|EPM2A|pc|chr6:145671238:145671399:-	0	-
#Partially deleted in new
chr6	145671264	145671359	ENSG00000112425.14|EPM2A|pc|chr6:145671264:145671359:-	0	-
#Deleted in new
chr6	145671304	145671399	ENSG00000112425.14|EPM2A|pc|chr6:145671304:145671399:-	0	-
#Deleted in new
chr6	145671334	145671399	ENSG00000112425.14|EPM2A|pc|chr6:145671334:145671399:-	0	-
#Deleted in new
chr6	145680082	145680130	ENSG00000112425.14|EPM2A|pc|chr6:145680082:145680130:-	0	-
#Deleted in new
chr6	145720900	145721008	ENSG00000112425.14|EPM2A|pc|chr6:145720900:145721008:-	0	-
#Deleted in new
chr6	145720900	145721155	ENSG00000112425.14|EPM2A|pc|chr6:145720900:145721155:-	0	-
#Deleted in new
chr6	145720900	145721742	ENSG00000112425.14|EPM2A|pc|chr6:145720900:145721742:-	0	-
#Partially deleted in new
chr6	145735569	145737218	ENSG00000270638.1|AL023806.1|lncRNA|chr6:145735569:145737218:+	0	+
#Deleted in new
chr6	145735907	145735964	ENSG00000112425.14|EPM2A|pc|chr6:145735907:145735964:-	0	-
#Deleted in new
chr6	145735907	145735986	ENSG00000112425.14|EPM2A|pc|chr6:145735907:145735986:-	0	-
#Deleted in new
chr6	145735907	145735989	ENSG00000112425.14|EPM2A|pc|chr6:145735907:145735989:-	0	-
#Deleted in new
chr6	145735995	145736023	ENSG00000112425.14|EPM2A|pc|chr6:145735995:145736023:-	0	-
#Deleted in new
chr6	145736910	145737173	ENSG00000270828.1|AL023806.2|lncRNA|chr6:145736910:145737173:-	0	-
#Deleted in new
chr6	145789269	145791973	ENSG00000280184.2|AL023806.3|lncRNA|chr6:145789269:145791973:-	0	-
#Deleted in new
chr6	145789759	145791832	ENSG00000280184.2|AL023806.3|lncRNA|chr6:145789759:145791832:-	0	-
#Deleted in new
chr6	145828360	145828420	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145828360:145828420:+	0	+
#Deleted in new
chr6	145828360	145828456	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145828360:145828456:+	0	+
#Deleted in new
chr6	145854601	145855086	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145854601:145855086:+	0	+
#Deleted in new
chr6	145862634	145862721	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145862634:145862721:+	0	+
#Deleted in new
chr6	145870929	145871294	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145870929:145871294:+	0	+
#Deleted in new
chr6	145870929	145871493	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145870929:145871493:+	0	+
#Deleted in new
chr6	145876689	145876971	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145876689:145876971:+	0	+
#Deleted in new
chr6	145877640	145878017	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145877640:145878017:+	0	+
#Deleted in new
chr6	145881578	145881639	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145881578:145881639:+	0	+
#Deleted in new
chr6	145881578	145881648	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145881578:145881648:+	0	+
#Deleted in new
chr6	145883204	145883316	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145883204:145883316:+	0	+
#Deleted in new
chr6	145883204	145883439	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145883204:145883439:+	0	+
#Deleted in new
chr6	145883204	145883593	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145883204:145883593:+	0	+
#Deleted in new
chr6	145883204	145883661	ENSG00000235652.7|AL356599.1|lncRNA|chr6:145883204:145883661:+	0	+
#Partially deleted in new
chr6	145917112	145918232	ENSG00000146414.15|SHPRH|pc|chr6:145917112:145918232:-	0	-
#Partially deleted in new
chr6	145917119	145918232	ENSG00000146414.15|SHPRH|pc|chr6:145917119:145918232:-	0	-
#Partially deleted in new
chr6	145963730	145964097	ENSG00000146414.15|SHPRH|pc|chr6:145963730:145964097:-	0	-
#Deleted in new
chr6	146600332	146600363	ENSG00000118492.16|ADGB|pc|chr6:146600332:146600363:+	0	+
#Deleted in new
chr6	14661828	14662293	ENSG00000234261.3|AL138720.1|lncRNA|chr6:14661828:14662293:-	0	-
#Deleted in new
chr6	146770438	146770609	ENSG00000118492.16|ADGB|pc|chr6:146770438:146770609:+	0	+
#Deleted in new
chr6	146770444	146770609	ENSG00000118492.16|ADGB|pc|chr6:146770444:146770609:+	0	+
#Deleted in new
chr6	146841900	146842976	ENSG00000233452.6|STXBP5-AS1|lncRNA|chr6:146841900:146842976:-	0	-
#Deleted in new
chr6	146842565	146842809	ENSG00000233452.6|STXBP5-AS1|lncRNA|chr6:146842565:146842809:-	0	-
#Deleted in new
chr6	146843113	146844712	ENSG00000233452.6|STXBP5-AS1|lncRNA|chr6:146843113:146844712:-	0	-
#Deleted in new
chr6	146844318	146844712	ENSG00000233452.6|STXBP5-AS1|lncRNA|chr6:146844318:146844712:-	0	-
#Deleted in new
chr6	146850158	146850596	ENSG00000233452.6|STXBP5-AS1|lncRNA|chr6:146850158:146850596:-	0	-
#Deleted in new
chr6	146850539	146850653	ENSG00000233452.6|STXBP5-AS1|lncRNA|chr6:146850539:146850653:-	0	-
#Deleted in new
chr6	146850820	146851331	ENSG00000233452.6|STXBP5-AS1|lncRNA|chr6:146850820:146851331:-	0	-
#Deleted in new
chr6	146850824	146851005	ENSG00000233452.6|STXBP5-AS1|lncRNA|chr6:146850824:146851005:-	0	-
#Deleted in new
chr6	146850824	146851331	ENSG00000233452.6|STXBP5-AS1|lncRNA|chr6:146850824:146851331:-	0	-
#Deleted in new
chr6	146862765	146863081	ENSG00000227748.1|AL138916.1|lncRNA|chr6:146862765:146863081:+	0	+
#Deleted in new
chr6	146915675	146915885	ENSG00000233452.6|STXBP5-AS1|lncRNA|chr6:146915675:146915885:-	0	-
#Deleted in new
chr6	146948527	146949740	ENSG00000272397.1|AL138916.2|lncRNA|chr6:146948527:146949740:-	0	-
#Partially deleted in new
chr6	147074804	147074847	ENSG00000233452.6|STXBP5-AS1|lncRNA|chr6:147074804:147074847:-	0	-
#Deleted in new
chr6	147165730	147165859	ENSG00000196634.3|LUADT1|lncRNA|chr6:147165730:147165859:+	0	+
#Deleted in new
chr6	147180728	147180992	ENSG00000196634.3|LUADT1|lncRNA|chr6:147180728:147180992:+	0	+
#Deleted in new
chr6	147660702	147660819	ENSG00000227681.5|AL033504.1|lncRNA|chr6:147660702:147660819:+	0	+
#Deleted in new
chr6	147660736	147660819	ENSG00000227681.5|AL033504.1|lncRNA|chr6:147660736:147660819:+	0	+
#Deleted in new
chr6	147692397	147692487	ENSG00000227681.5|AL033504.1|lncRNA|chr6:147692397:147692487:+	0	+
#Deleted in new
chr6	148020835	148020974	ENSG00000234675.1|AL445123.1|lncRNA|chr6:148020835:148020974:-	0	-
#Deleted in new
chr6	148280282	148280428	ENSG00000224658.1|AL513164.1|lncRNA|chr6:148280282:148280428:-	0	-
#Deleted in new
chr6	149066175	149066254	ENSG00000111962.7|UST|pc|chr6:149066175:149066254:+	0	+
#Deleted in new
chr6	149346477	149346596	ENSG00000055208.18|TAB2|pc|chr6:149346477:149346596:+	0	+
#Deleted in new
chr6	149372382	149372404	ENSG00000055208.18|TAB2|pc|chr6:149372382:149372404:+	0	+
#Deleted in new
chr6	149379933	149380143	ENSG00000055208.18|TAB2|pc|chr6:149379933:149380143:+	0	+
#Partially deleted in new
chr6	149459523	149459678	ENSG00000178199.13|ZC3H12D|pc|chr6:149459523:149459678:-	0	-
#Partially deleted in new
chr6	149563649	149563949	ENSG00000235168.1|AL078581.2|lncRNA|chr6:149563649:149563949:+	0	+
#Deleted in new
chr6	149576088	149576329	ENSG00000281021.1|AL078581.3|lncRNA|chr6:149576088:149576329:-	0	-
#Deleted in new
chr6	149577369	149577523	ENSG00000281021.1|AL078581.3|lncRNA|chr6:149577369:149577523:-	0	-
#Deleted in new
chr6	149578086	149578216	ENSG00000281021.1|AL078581.3|lncRNA|chr6:149578086:149578216:-	0	-
#Deleted in new
chr6	149584414	149584530	ENSG00000281021.1|AL078581.3|lncRNA|chr6:149584414:149584530:-	0	-
#Partially deleted in new
chr6	149591754	149592044	ENSG00000233330.1|AL078581.1|lncRNA|chr6:149591754:149592044:-	0	-
#Deleted in new
chr6	149592613	149592663	ENSG00000233330.1|AL078581.1|lncRNA|chr6:149592613:149592663:-	0	-
#Partially deleted in new
chr6	149675695	149676366	ENSG00000131023.12|LATS1|pc|chr6:149675695:149676366:-	0	-
#Deleted in new
chr6	149697091	149697186	ENSG00000131023.12|LATS1|pc|chr6:149697091:149697186:-	0	-
#Partially deleted in new
chr6	149716206	149716425	ENSG00000131023.12|LATS1|pc|chr6:149716206:149716425:-	0	-
#Partially deleted in new
chr6	149724314	149727198	ENSG00000120253.13|NUP43|pc|chr6:149724314:149727198:-	0	-
#Deleted in new
chr6	149765690	149765753	ENSG00000120265.16|PCMT1|pc|chr6:149765690:149765753:+	0	+
#Deleted in new
chr6	14976787	14977318	ENSG00000234261.3|AL138720.1|lncRNA|chr6:14976787:14977318:-	0	-
#Split in new
chr6	149796150	149797439	ENSG00000231760.4|AL355312.2|lncRNA|chr6:149796150:149797439:-	0	-
#Deleted in new
chr6	149797316	149798161	ENSG00000231760.4|AL355312.2|lncRNA|chr6:149797316:149798161:-	0	-
#Deleted in new
chr6	149797374	149798161	ENSG00000231760.4|AL355312.2|lncRNA|chr6:149797374:149798161:-	0	-
#Deleted in new
chr6	149797920	149798172	ENSG00000231760.4|AL355312.2|lncRNA|chr6:149797920:149798172:-	0	-
#Deleted in new
chr6	149799055	149799150	ENSG00000231760.4|AL355312.2|lncRNA|chr6:149799055:149799150:-	0	-
#Deleted in new
chr6	149883374	149884504	ENSG00000164520.11|RAET1E|pc|chr6:149883374:149884504:-	0	-
#Deleted in new
chr6	149884430	149884455	ENSG00000223701.3|RAET1E-AS1|lncRNA|chr6:149884430:149884455:+	0	+
#Deleted in new
chr6	149885584	149885673	ENSG00000223701.3|RAET1E-AS1|lncRNA|chr6:149885584:149885673:+	0	+
#Deleted in new
chr6	149895478	149896032	ENSG00000164520.11|RAET1E|pc|chr6:149895478:149896032:-	0	-
#Deleted in new
chr6	149895845	149896032	ENSG00000164520.11|RAET1E|pc|chr6:149895845:149896032:-	0	-
#Deleted in new
chr6	149895845	149896059	ENSG00000164520.11|RAET1E|pc|chr6:149895845:149896059:-	0	-
#Deleted in new
chr6	149896132	149896239	ENSG00000223701.3|RAET1E-AS1|lncRNA|chr6:149896132:149896239:+	0	+
#Deleted in new
chr6	149898020	149898077	ENSG00000164520.11|RAET1E|pc|chr6:149898020:149898077:-	0	-
#Deleted in new
chr6	149898020	149898102	ENSG00000164520.11|RAET1E|pc|chr6:149898020:149898102:-	0	-
#Deleted in new
chr6	149916877	149917074	ENSG00000203722.7|RAET1G|pc|chr6:149916877:149917074:-	0	-
#Deleted in new
chr6	149916912	149917074	ENSG00000203722.7|RAET1G|pc|chr6:149916912:149917074:-	0	-
#Deleted in new
chr6	149918173	149918284	ENSG00000203722.7|RAET1G|pc|chr6:149918173:149918284:-	0	-
#Deleted in new
chr6	149918173	149918384	ENSG00000203722.7|RAET1G|pc|chr6:149918173:149918384:-	0	-
#Deleted in new
chr6	149922925	149923010	ENSG00000203722.7|RAET1G|pc|chr6:149922925:149923010:-	0	-
#Deleted in new
chr6	149922925	149923078	ENSG00000203722.7|RAET1G|pc|chr6:149922925:149923078:-	0	-
#Deleted in new
chr6	149922925	149923121	ENSG00000203722.7|RAET1G|pc|chr6:149922925:149923121:-	0	-
#Deleted in new
chr6	149941999	149942157	ENSG00000131015.4|ULBP2|pc|chr6:149941999:149942157:+	0	+
#Partially deleted in new
chr6	149948722	149949235	ENSG00000131015.4|ULBP2|pc|chr6:149948722:149949235:+	0	+
#Deleted in new
chr6	149964006	149964134	ENSG00000111981.4|ULBP1|pc|chr6:149964006:149964134:+	0	+
#Partially deleted in new
chr6	149971368	149973710	ENSG00000111981.4|ULBP1|pc|chr6:149971368:149973710:+	0	+
#Deleted in new
chr6	14997415	14997475	ENSG00000234261.3|AL138720.1|lncRNA|chr6:14997415:14997475:-	0	-
#Partially deleted in new
chr6	150018333	150018855	ENSG00000155918.7|RAET1L|pc|chr6:150018333:150018855:-	0	-
#Deleted in new
chr6	150025386	150025471	ENSG00000155918.7|RAET1L|pc|chr6:150025386:150025471:-	0	-
#Deleted in new
chr6	150025386	150025532	ENSG00000155918.7|RAET1L|pc|chr6:150025386:150025532:-	0	-
#Deleted in new
chr6	150041780	150042033	ENSG00000235972.1|AL355497.2|lncRNA|chr6:150041780:150042033:-	0	-
#Partially deleted in new
chr6	150063149	150063351	ENSG00000131019.10|ULBP3|pc|chr6:150063149:150063351:-	0	-
#Duplicated in new
chr6	150065898	150066162	ENSG00000131019.10|ULBP3|pc|chr6:150065898:150066162:-	0	-
#Deleted in new
chr6	150068978	150069066	ENSG00000131019.10|ULBP3|pc|chr6:150068978:150069066:-	0	-
#Deleted in new
chr6	150068978	150069095	ENSG00000131019.10|ULBP3|pc|chr6:150068978:150069095:-	0	-
#Deleted in new
chr6	150369976	150370012	ENSG00000009765.14|IYD|pc|chr6:150369976:150370012:+	0	+
#Partially deleted in new
chr6	150395454	150396890	ENSG00000009765.14|IYD|pc|chr6:150395454:150396890:+	0	+
#Deleted in new
chr6	150396470	150396816	ENSG00000009765.14|IYD|pc|chr6:150396470:150396816:+	0	+
#Partially deleted in new
chr6	150398054	150404628	ENSG00000009765.14|IYD|pc|chr6:150398054:150404628:+	0	+
#Partially deleted in new
chr6	150398054	150405969	ENSG00000009765.14|IYD|pc|chr6:150398054:150405969:+	0	+
#Deleted in new
chr6	150650727	150650786	ENSG00000120278.15|PLEKHG1|pc|chr6:150650727:150650786:+	0	+
#Deleted in new
chr6	150650771	150651180	ENSG00000226599.1|AL450344.2|lncRNA|chr6:150650771:150651180:-	0	-
#Deleted in new
chr6	150651820	150652025	ENSG00000226599.1|AL450344.2|lncRNA|chr6:150651820:150652025:-	0	-
#Deleted in new
chr6	150866505	150866635	ENSG00000120254.15|MTHFD1L|pc|chr6:150866505:150866635:+	0	+
#Deleted in new
chr6	150866556	150866635	ENSG00000120254.15|MTHFD1L|pc|chr6:150866556:150866635:+	0	+
#Deleted in new
chr6	150898859	150899021	ENSG00000120254.15|MTHFD1L|pc|chr6:150898859:150899021:+	0	+
#Deleted in new
chr6	150912667	150912948	ENSG00000120254.15|MTHFD1L|pc|chr6:150912667:150912948:+	0	+
#Deleted in new
chr6	150985038	150985208	ENSG00000120254.15|MTHFD1L|pc|chr6:150985038:150985208:+	0	+
#Deleted in new
chr6	151055770	151056057	ENSG00000232290.1|AL133260.2|lncRNA|chr6:151055770:151056057:-	0	-
#Partially deleted in new
chr6	151137604	151137745	ENSG00000223598.1|AL138733.1|lncRNA|chr6:151137604:151137745:-	0	-
#Deleted in new
chr6	151138748	151138866	ENSG00000223598.1|AL138733.1|lncRNA|chr6:151138748:151138866:-	0	-
#Deleted in new
chr6	151150888	151151138	ENSG00000223598.1|AL138733.1|lncRNA|chr6:151150888:151151138:-	0	-
#Deleted in new
chr6	151197518	151197638	ENSG00000231883.1|AL138733.2|lncRNA|chr6:151197518:151197638:-	0	-
#Deleted in new
chr6	151228381	151228447	ENSG00000223598.1|AL138733.1|lncRNA|chr6:151228381:151228447:-	0	-
#Partially deleted in new
chr6	151404762	151405267	ENSG00000155906.16|RMND1|pc|chr6:151404762:151405267:-	0	-
#Partially deleted in new
chr6	151404853	151405267	ENSG00000155906.16|RMND1|pc|chr6:151404853:151405267:-	0	-
#Deleted in new
chr6	151444465	151444625	ENSG00000155906.16|RMND1|pc|chr6:151444465:151444625:-	0	-
#Deleted in new
chr6	151656690	151656763	ENSG00000091831.23|ESR1|pc|chr6:151656690:151656763:+	0	+
#Deleted in new
chr6	151701874	151702005	ENSG00000091831.23|ESR1|pc|chr6:151701874:151702005:+	0	+
#Deleted in new
chr6	151983447	151983560	ENSG00000091831.23|ESR1|pc|chr6:151983447:151983560:+	0	+
#Deleted in new
chr6	152112758	152113134	ENSG00000284615.1|AL078582.1|lncRNA|chr6:152112758:152113134:+	0	+
#Partially deleted in new
chr6	152319898	152320216	ENSG00000131018.22|SYNE1|pc|chr6:152319898:152320216:-	0	-
#Deleted in new
chr6	152363725	152363774	ENSG00000131018.22|SYNE1|pc|chr6:152363725:152363774:-	0	-
#Deleted in new
chr6	152474634	152474638	ENSG00000131018.22|SYNE1|pc|chr6:152474634:152474638:-	0	-
#Deleted in new
chr6	152478516	152478630	ENSG00000131018.22|SYNE1|pc|chr6:152478516:152478630:-	0	-
#Deleted in new
chr6	152481155	152481172	ENSG00000131018.22|SYNE1|pc|chr6:152481155:152481172:-	0	-
#Deleted in new
chr6	152545929	152546060	ENSG00000233464.2|AL589963.1|lncRNA|chr6:152545929:152546060:+	0	+
#Partially deleted in new
chr6	152546388	152546984	ENSG00000233464.2|AL589963.1|lncRNA|chr6:152546388:152546984:+	0	+
#Deleted in new
chr6	152722762	152723284	ENSG00000120279.6|MYCT1|pc|chr6:152722762:152723284:+	0	+
#Deleted in new
chr6	152794495	152794754	ENSG00000224893.5|AL160162.1|lncRNA|chr6:152794495:152794754:-	0	-
#Deleted in new
chr6	152804752	152804873	ENSG00000224893.5|AL160162.1|lncRNA|chr6:152804752:152804873:-	0	-
#Deleted in new
chr6	152805005	152805128	ENSG00000224893.5|AL160162.1|lncRNA|chr6:152805005:152805128:-	0	-
#Deleted in new
chr6	152831853	152831913	ENSG00000224893.5|AL160162.1|lncRNA|chr6:152831853:152831913:-	0	-
#Deleted in new
chr6	1528363	1528911	ENSG00000272279.1|AL512329.2|lncRNA|chr6:1528363:1528911:-	0	-
#Partially deleted in new
chr6	152987361	152990095	ENSG00000112031.15|MTRF1L|pc|chr6:152987361:152990095:-	0	-
#Deleted in new
chr6	152987955	152988014	ENSG00000227627.2|AL080276.2|lncRNA|chr6:152987955:152988014:+	0	+
#Deleted in new
chr6	152987955	152988022	ENSG00000227627.2|AL080276.2|lncRNA|chr6:152987955:152988022:+	0	+
#Deleted in new
chr6	152988675	152989223	ENSG00000227627.2|AL080276.2|lncRNA|chr6:152988675:152989223:+	0	+
#Deleted in new
chr6	153268232	153268284	ENSG00000213121.2|AL590867.1|lncRNA|chr6:153268232:153268284:+	0	+
#Deleted in new
chr6	153346445	153347488	ENSG00000213121.2|AL590867.1|lncRNA|chr6:153346445:153347488:+	0	+
#Deleted in new
chr6	154046693	154046815	ENSG00000112038.17|OPRM1|pc|chr6:154046693:154046815:+	0	+
#Partially deleted in new
chr6	154073514	154074458	ENSG00000112038.17|OPRM1|pc|chr6:154073514:154074458:+	0	+
#Deleted in new
chr6	154107464	154107652	ENSG00000112038.17|OPRM1|pc|chr6:154107464:154107652:+	0	+
#Deleted in new
chr6	154107615	154107652	ENSG00000112038.17|OPRM1|pc|chr6:154107615:154107652:+	0	+
#Deleted in new
chr6	154107747	154109018	ENSG00000112038.17|OPRM1|pc|chr6:154107747:154109018:+	0	+
#Deleted in new
chr6	154108015	154109018	ENSG00000112038.17|OPRM1|pc|chr6:154108015:154109018:+	0	+
#Deleted in new
chr6	154306694	154306762	ENSG00000074706.13|IPCEF1|pc|chr6:154306694:154306762:-	0	-
#Deleted in new
chr6	154306694	154306768	ENSG00000074706.13|IPCEF1|pc|chr6:154306694:154306768:-	0	-
#Deleted in new
chr6	154330020	154330081	ENSG00000074706.13|IPCEF1|pc|chr6:154330020:154330081:-	0	-
#Partially deleted in new
chr6	154414722	154414765	ENSG00000153721.18|CNKSR3|pc|chr6:154414722:154414765:-	0	-
#Deleted in new
chr6	154478328	154478491	ENSG00000153721.18|CNKSR3|pc|chr6:154478328:154478491:-	0	-
#Deleted in new
chr6	154824879	154824942	ENSG00000213079.9|SCAF8|pc|chr6:154824879:154824942:+	0	+
#Deleted in new
chr6	154860737	154860998	ENSG00000146426.17|TIAM2|pc|chr6:154860737:154860998:+	0	+
#Deleted in new
chr6	155016240	155016361	ENSG00000146426.17|TIAM2|pc|chr6:155016240:155016361:+	0	+
#Deleted in new
chr6	155090288	155090379	ENSG00000146426.17|TIAM2|pc|chr6:155090288:155090379:+	0	+
#Deleted in new
chr6	155149108	155149226	ENSG00000146426.17|TIAM2|pc|chr6:155149108:155149226:+	0	+
#Deleted in new
chr6	155149120	155149226	ENSG00000146426.17|TIAM2|pc|chr6:155149120:155149226:+	0	+
#Partially deleted in new
chr6	15523562	15524669	ENSG00000047579.19|DTNBP1|pc|chr6:15523562:15524669:-	0	-
#Partially deleted in new
chr6	15523984	15524669	ENSG00000047579.19|DTNBP1|pc|chr6:15523984:15524669:-	0	-
#Partially deleted in new
chr6	15524111	15524669	ENSG00000047579.19|DTNBP1|pc|chr6:15524111:15524669:-	0	-
#Deleted in new
chr6	155250537	155250624	ENSG00000146426.17|TIAM2|pc|chr6:155250537:155250624:+	0	+
#Deleted in new
chr6	155264012	155264288	ENSG00000171217.5|CLDN20|pc|chr6:155264012:155264288:+	0	+
#Partially deleted in new
chr6	155303173	155303498	ENSG00000029639.10|TFB1M|pc|chr6:155303173:155303498:-	0	-
#Deleted in new
chr6	155313137	155313244	ENSG00000029639.10|TFB1M|pc|chr6:155313137:155313244:-	0	-
#Deleted in new
chr6	15548329	15548362	ENSG00000047579.19|DTNBP1|pc|chr6:15548329:15548362:-	0	-
#Deleted in new
chr6	156497745	156498023	ENSG00000227360.1|AL512658.1|lncRNA|chr6:156497745:156498023:-	0	-
#Deleted in new
chr6	156871613	156871652	ENSG00000049618.22|ARID1B|pc|chr6:156871613:156871652:+	0	+
#Deleted in new
chr6	156936501	156936673	ENSG00000049618.22|ARID1B|pc|chr6:156936501:156936673:+	0	+
#Partially deleted in new
chr6	157110471	157111305	ENSG00000049618.22|ARID1B|pc|chr6:157110471:157111305:+	0	+
#Deleted in new
chr6	157119573	157119706	ENSG00000233044.1|AL049820.1|lncRNA|chr6:157119573:157119706:-	0	-
#Deleted in new
chr6	157164638	157164748	ENSG00000049618.22|ARID1B|pc|chr6:157164638:157164748:+	0	+
#Partially deleted in new
chr6	157630313	157632882	ENSG00000175048.16|ZDHHC14|pc|chr6:157630313:157632882:+	0	+
#Deleted in new
chr6	157700386	157700471	ENSG00000130340.15|SNX9|pc|chr6:157700386:157700471:+	0	+
#Deleted in new
chr6	157779823	157779867	ENSG00000130340.15|SNX9|pc|chr6:157779823:157779867:+	0	+
#Deleted in new
chr6	157829142	157829442	ENSG00000234361.1|AL391863.2|lncRNA|chr6:157829142:157829442:-	0	-
#Deleted in new
chr6	157830192	157830573	ENSG00000234361.1|AL391863.2|lncRNA|chr6:157830192:157830573:-	0	-
#Partially deleted in new
chr6	157872570	157872977	ENSG00000229502.5|AL391863.1|lncRNA|chr6:157872570:157872977:-	0	-
#Partially deleted in new
chr6	157885113	157885391	ENSG00000236324.1|AL035634.1|lncRNA|chr6:157885113:157885391:-	0	-
#Deleted in new
chr6	157892692	157892786	ENSG00000236324.1|AL035634.1|lncRNA|chr6:157892692:157892786:-	0	-
#Partially deleted in new
chr6	158001106	158001375	ENSG00000233496.1|SYNJ2-IT1|lncRNA|chr6:158001106:158001375:+	0	+
#Deleted in new
chr6	158001581	158001701	ENSG00000233496.1|SYNJ2-IT1|lncRNA|chr6:158001581:158001701:+	0	+
#Partially deleted in new
chr6	158017464	158017795	ENSG00000078269.14|SYNJ2|pc|chr6:158017464:158017795:+	0	+
#Partially deleted in new
chr6	158027366	158029406	ENSG00000078269.14|SYNJ2|pc|chr6:158027366:158029406:+	0	+
#Deleted in new
chr6	158030407	158030937	ENSG00000078269.14|SYNJ2|pc|chr6:158030407:158030937:+	0	+
#Deleted in new
chr6	158117531	158117575	ENSG00000122335.13|SERAC1|pc|chr6:158117531:158117575:-	0	-
#Deleted in new
chr6	158145263	158145363	ENSG00000122335.13|SERAC1|pc|chr6:158145263:158145363:-	0	-
#Partially deleted in new
chr6	158145919	158146913	ENSG00000122335.13|SERAC1|pc|chr6:158145919:158146913:-	0	-
#Deleted in new
chr6	158160931	158162152	ENSG00000122335.13|SERAC1|pc|chr6:158160931:158162152:-	0	-
#Deleted in new
chr6	158166113	158166159	ENSG00000122335.13|SERAC1|pc|chr6:158166113:158166159:-	0	-
#Split in new
chr6	158191976	158199344	ENSG00000272047.1|GTF2H5|pc|chr6:158191976:158199344:+	0	+
#Deleted in new
chr6	158282262	158282378	ENSG00000130338.12|TULP4|pc|chr6:158282262:158282378:+	0	+
#Deleted in new
chr6	158282840	158282860	ENSG00000274023.1|AL360169.2|lncRNA|chr6:158282840:158282860:+	0	+
#Deleted in new
chr6	158310363	158310483	ENSG00000130338.12|TULP4|pc|chr6:158310363:158310483:+	0	+
#Deleted in new
chr6	158397884	158397975	ENSG00000238019.1|AL360169.1|lncRNA|chr6:158397884:158397975:-	0	-
#Deleted in new
chr6	158398509	158398561	ENSG00000238019.1|AL360169.1|lncRNA|chr6:158398509:158398561:-	0	-
#Deleted in new
chr6	158427838	158428379	ENSG00000274023.1|AL360169.2|lncRNA|chr6:158427838:158428379:+	0	+
#Deleted in new
chr6	158651752	158651842	ENSG00000164674.15|SYTL3|pc|chr6:158651752:158651842:+	0	+
#Deleted in new
chr6	158661268	158661385	ENSG00000164674.15|SYTL3|pc|chr6:158661268:158661385:+	0	+
#Deleted in new
chr6	158661318	158661385	ENSG00000164674.15|SYTL3|pc|chr6:158661318:158661385:+	0	+
#Deleted in new
chr6	158788313	158788479	ENSG00000092820.17|EZR|pc|chr6:158788313:158788479:-	0	-
#Deleted in new
chr6	158789462	158789474	ENSG00000092820.17|EZR|pc|chr6:158789462:158789474:-	0	-
#Deleted in new
chr6	158870168	158870310	ENSG00000203711.11|C6orf99|lncRNA|chr6:158870168:158870310:+	0	+
#Deleted in new
chr6	158873527	158873621	ENSG00000203711.11|C6orf99|lncRNA|chr6:158873527:158873621:+	0	+
#Deleted in new
chr6	158895216	158895366	ENSG00000203711.11|C6orf99|lncRNA|chr6:158895216:158895366:+	0	+
#Deleted in new
chr6	158895220	158895366	ENSG00000203711.11|C6orf99|lncRNA|chr6:158895220:158895366:+	0	+
#Deleted in new
chr6	158908836	158908895	ENSG00000203711.11|C6orf99|lncRNA|chr6:158908836:158908895:+	0	+
#Partially deleted in new
chr6	158972870	158977848	ENSG00000130363.11|RSPH3|pc|chr6:158972870:158977848:-	0	-
#Deleted in new
chr6	158975390	158975922	ENSG00000130363.11|RSPH3|pc|chr6:158975390:158975922:-	0	-
#Deleted in new
chr6	158976581	158976842	ENSG00000130363.11|RSPH3|pc|chr6:158976581:158976842:-	0	-
#Deleted in new
chr6	158988177	158988276	ENSG00000271913.5|AL035530.2|lncRNA|chr6:158988177:158988276:+	0	+
#Deleted in new
chr6	158990435	158990572	ENSG00000271913.5|AL035530.2|lncRNA|chr6:158990435:158990572:+	0	+
#Deleted in new
chr6	159025945	159026041	ENSG00000271913.5|AL035530.2|lncRNA|chr6:159025945:159026041:+	0	+
#Deleted in new
chr6	159025948	159026041	ENSG00000271913.5|AL035530.2|lncRNA|chr6:159025948:159026041:+	0	+
#Deleted in new
chr6	159027143	159027230	ENSG00000271913.5|AL035530.2|lncRNA|chr6:159027143:159027230:+	0	+
#Deleted in new
chr6	159064727	159064938	ENSG00000226032.1|AL035530.1|lncRNA|chr6:159064727:159064938:-	0	-
#Deleted in new
chr6	159064878	159064925	ENSG00000271913.5|AL035530.2|lncRNA|chr6:159064878:159064925:+	0	+
#Partially deleted in new
chr6	159107790	159108153	ENSG00000224478.1|AL356417.1|lncRNA|chr6:159107790:159108153:+	0	+
#Partially deleted in new
chr6	159109314	159109439	ENSG00000224478.1|AL356417.1|lncRNA|chr6:159109314:159109439:+	0	+
#Deleted in new
chr6	159115431	159115508	ENSG00000224478.1|AL356417.1|lncRNA|chr6:159115431:159115508:+	0	+
#Deleted in new
chr6	159115773	159116053	ENSG00000224478.1|AL356417.1|lncRNA|chr6:159115773:159116053:+	0	+
#Partially deleted in new
chr6	159165898	159166188	ENSG00000233682.3|AL356417.2|lncRNA|chr6:159165898:159166188:-	0	-
#Deleted in new
chr6	159353921	159354125	ENSG00000231178.1|AL357832.1|lncRNA|chr6:159353921:159354125:-	0	-
#Deleted in new
chr6	159354457	159354673	ENSG00000231178.1|AL357832.1|lncRNA|chr6:159354457:159354673:-	0	-
#Deleted in new
chr6	159393208	159393350	ENSG00000234777.1|LINC02529|lncRNA|chr6:159393208:159393350:+	0	+
#Deleted in new
chr6	159396060	159396443	ENSG00000234777.1|LINC02529|lncRNA|chr6:159396060:159396443:+	0	+
#Partially deleted in new
chr6	159586954	159587955	ENSG00000237927.1|AL078604.2|lncRNA|chr6:159586954:159587955:-	0	-
#Split in new
chr6	159669056	159682638	ENSG00000112096.16|SOD2|pc|chr6:159669056:159682638:-	0	-
#Deleted in new
chr6	159693144	159693228	ENSG00000112096.16|SOD2|pc|chr6:159693144:159693228:-	0	-
#Deleted in new
chr6	159693144	159693234	ENSG00000112096.16|SOD2|pc|chr6:159693144:159693234:-	0	-
#Deleted in new
chr6	159693144	159693241	ENSG00000112096.16|SOD2|pc|chr6:159693144:159693241:-	0	-
#Deleted in new
chr6	159693144	159693244	ENSG00000112096.16|SOD2|pc|chr6:159693144:159693244:-	0	-
#Deleted in new
chr6	159693144	159693278	ENSG00000112096.16|SOD2|pc|chr6:159693144:159693278:-	0	-
#Deleted in new
chr6	159693144	159693328	ENSG00000112096.16|SOD2|pc|chr6:159693144:159693328:-	0	-
#Deleted in new
chr6	159730884	159730965	ENSG00000112096.16|SOD2|pc|chr6:159730884:159730965:-	0	-
#Deleted in new
chr6	159745129	159745186	ENSG00000112096.16|SOD2|pc|chr6:159745129:159745186:-	0	-
#Split in new
chr6	159760257	159761636	ENSG00000112096.16|SOD2|pc|chr6:159760257:159761636:-	0	-
#Split in new
chr6	159760327	159762142	ENSG00000120437.8|ACAT2|pc|chr6:159760327:159762142:+	0	+
#Partially deleted in new
chr6	159789811	159789888	ENSG00000112110.9|MRPL18|pc|chr6:159789811:159789888:+	0	+
#Deleted in new
chr6	159789885	159790060	ENSG00000112110.9|MRPL18|pc|chr6:159789885:159790060:+	0	+
#Deleted in new
chr6	160003290	160003387	ENSG00000268257.2|AIRN|lncRNA|chr6:160003290:160003387:-	0	-
#Deleted in new
chr6	160003290	160007664	ENSG00000268257.2|AIRN|lncRNA|chr6:160003290:160007664:-	0	-
#Deleted in new
chr6	160004950	160005158	ENSG00000268257.2|AIRN|lncRNA|chr6:160004950:160005158:-	0	-
#Deleted in new
chr6	160006480	160007664	ENSG00000268257.2|AIRN|lncRNA|chr6:160006480:160007664:-	0	-
#Partially deleted in new
chr6	160104673	160111504	ENSG00000197081.12|IGF2R|pc|chr6:160104673:160111504:+	0	+
#Deleted in new
chr6	160112564	160112673	ENSG00000197081.12|IGF2R|pc|chr6:160112564:160112673:+	0	+
#Deleted in new
chr6	160113421	160113507	ENSG00000197081.12|IGF2R|pc|chr6:160113421:160113507:+	0	+
#Deleted in new
chr6	160272616	160272713	ENSG00000230234.1|AL162582.1|lncRNA|chr6:160272616:160272713:+	0	+
#Duplicated in new
chr6	160531482	160531890	ENSG00000198670.11|LPA|pc|chr6:160531482:160531890:-	0	-
#Duplicated in new
chr6	160532530	160532649	ENSG00000198670.11|LPA|pc|chr6:160532530:160532649:-	0	-
#Duplicated in new
chr6	160578522	160578704	ENSG00000198670.11|LPA|pc|chr6:160578522:160578704:-	0	-
#Duplicated in new
chr6	160586448	160586630	ENSG00000198670.11|LPA|pc|chr6:160586448:160586630:-	0	-
#Duplicated in new
chr6	160586479	160586630	ENSG00000198670.11|LPA|pc|chr6:160586479:160586630:-	0	-
#Deleted in new
chr6	160599499	160599659	ENSG00000198670.11|LPA|pc|chr6:160599499:160599659:-	0	-
#Deleted in new
chr6	160617115	160617276	ENSG00000198670.11|LPA|pc|chr6:160617115:160617276:-	0	-
#Deleted in new
chr6	160617116	160617276	ENSG00000198670.11|LPA|pc|chr6:160617116:160617276:-	0	-
#Partially deleted in new
chr6	160705387	160706542	ENSG00000122194.18|PLG|pc|chr6:160705387:160706542:+	0	+
#Deleted in new
chr6	160706109	160706142	ENSG00000122194.18|PLG|pc|chr6:160706109:160706142:+	0	+
#Partially deleted in new
chr6	160711076	160711572	ENSG00000122194.18|PLG|pc|chr6:160711076:160711572:+	0	+
#Deleted in new
chr6	160880322	160880394	ENSG00000224371.5|AL391361.2|lncRNA|chr6:160880322:160880394:-	0	-
#Deleted in new
chr6	160900223	160900399	ENSG00000224371.5|AL391361.2|lncRNA|chr6:160900223:160900399:-	0	-
#Deleted in new
chr6	160926368	160926578	ENSG00000233342.1|AL391361.3|lncRNA|chr6:160926368:160926578:+	0	+
#Deleted in new
chr6	160926993	160927162	ENSG00000233342.1|AL391361.3|lncRNA|chr6:160926993:160927162:+	0	+
#Deleted in new
chr6	160931079	160931372	ENSG00000231863.1|AL139393.1|lncRNA|chr6:160931079:160931372:+	0	+
#Deleted in new
chr6	160956570	160956700	ENSG00000231863.1|AL139393.1|lncRNA|chr6:160956570:160956700:+	0	+
#Deleted in new
chr6	160958968	160959064	ENSG00000231863.1|AL139393.1|lncRNA|chr6:160958968:160959064:+	0	+
#Deleted in new
chr6	160969717	160969771	ENSG00000231863.1|AL139393.1|lncRNA|chr6:160969717:160969771:+	0	+
#Deleted in new
chr6	161067198	161067296	ENSG00000085511.19|MAP3K4|pc|chr6:161067198:161067296:+	0	+
#Deleted in new
chr6	161143955	161144266	ENSG00000026652.13|AGPAT4|pc|chr6:161143955:161144266:-	0	-
#Deleted in new
chr6	161545111	161545437	ENSG00000185345.18|PRKN|pc|chr6:161545111:161545437:-	0	-
#Deleted in new
chr6	162264739	162264749	ENSG00000185345.18|PRKN|pc|chr6:162264739:162264749:-	0	-
#Deleted in new
chr6	162265190	162265204	ENSG00000185345.18|PRKN|pc|chr6:162265190:162265204:-	0	-
#Deleted in new
chr6	162266457	162266474	ENSG00000185345.18|PRKN|pc|chr6:162266457:162266474:-	0	-
#Deleted in new
chr6	162269606	162269628	ENSG00000185345.18|PRKN|pc|chr6:162269606:162269628:-	0	-
#Deleted in new
chr6	162270013	162270023	ENSG00000185345.18|PRKN|pc|chr6:162270013:162270023:-	0	-
#Deleted in new
chr6	162270292	162270298	ENSG00000185345.18|PRKN|pc|chr6:162270292:162270298:-	0	-
#Deleted in new
chr6	162271417	162271515	ENSG00000185345.18|PRKN|pc|chr6:162271417:162271515:-	0	-
#Deleted in new
chr6	162274975	162275053	ENSG00000185345.18|PRKN|pc|chr6:162274975:162275053:-	0	-
#Deleted in new
chr6	162275363	162275386	ENSG00000185345.18|PRKN|pc|chr6:162275363:162275386:-	0	-
#Deleted in new
chr6	1624644	1624740	ENSG00000112699.10|GMDS|pc|chr6:1624644:1624740:-	0	-
#Partially deleted in new
chr6	1625096	1625501	ENSG00000112699.10|GMDS|pc|chr6:1625096:1625501:-	0	-
#Deleted in new
chr6	16259100	16259376	ENSG00000282024.1|AL009031.1|lncRNA|chr6:16259100:16259376:-	0	-
#Deleted in new
chr6	16262176	16262926	ENSG00000282024.1|AL009031.1|lncRNA|chr6:16262176:16262926:-	0	-
#Deleted in new
chr6	16262681	16263354	ENSG00000282024.1|AL009031.1|lncRNA|chr6:16262681:16263354:-	0	-
#Deleted in new
chr6	16264340	16264553	ENSG00000282024.1|AL009031.1|lncRNA|chr6:16264340:16264553:-	0	-
#Partially deleted in new
chr6	162727131	162727279	ENSG00000112530.11|PACRG|pc|chr6:162727131:162727279:+	0	+
#Deleted in new
chr6	16289517	16289568	ENSG00000137198.9|GMPR|pc|chr6:16289517:16289568:+	0	+
#Deleted in new
chr6	163016208	163016234	ENSG00000112530.11|PACRG|pc|chr6:163016208:163016234:+	0	+
#Deleted in new
chr6	163044648	163044746	ENSG00000225437.5|PACRG-AS2|lncRNA|chr6:163044648:163044746:-	0	-
#Deleted in new
chr6	163046583	163046683	ENSG00000225437.5|PACRG-AS2|lncRNA|chr6:163046583:163046683:-	0	-
#Deleted in new
chr6	163046583	163046685	ENSG00000225437.5|PACRG-AS2|lncRNA|chr6:163046583:163046685:-	0	-
#Deleted in new
chr6	163053924	163054161	ENSG00000225437.5|PACRG-AS2|lncRNA|chr6:163053924:163054161:-	0	-
#Partially deleted in new
chr6	163060842	163060851	ENSG00000112530.11|PACRG|pc|chr6:163060842:163060851:+	0	+
#Deleted in new
chr6	163095333	163095429	ENSG00000112530.11|PACRG|pc|chr6:163095333:163095429:+	0	+
#Deleted in new
chr6	163179215	163179401	ENSG00000112530.11|PACRG|pc|chr6:163179215:163179401:+	0	+
#Deleted in new
chr6	163187672	163187850	ENSG00000225683.5|PACRG-AS3|lncRNA|chr6:163187672:163187850:-	0	-
#Partially deleted in new
chr6	163312777	163312895	ENSG00000112530.11|PACRG|pc|chr6:163312777:163312895:+	0	+
#Partially deleted in new
chr6	163312778	163312895	ENSG00000112530.11|PACRG|pc|chr6:163312778:163312895:+	0	+
#Deleted in new
chr6	163318793	163318911	ENSG00000281692.1|PACRG-AS1|lncRNA|chr6:163318793:163318911:-	0	-
#Deleted in new
chr6	163320400	163320559	ENSG00000281692.1|PACRG-AS1|lncRNA|chr6:163320400:163320559:-	0	-
#Deleted in new
chr6	163423133	163423213	ENSG00000112531.16|QKI|pc|chr6:163423133:163423213:+	0	+
#Deleted in new
chr6	163428994	163429017	ENSG00000112531.16|QKI|pc|chr6:163428994:163429017:+	0	+
#Deleted in new
chr6	163457380	163457551	ENSG00000112531.16|QKI|pc|chr6:163457380:163457551:+	0	+
#Deleted in new
chr6	163586582	163586733	ENSG00000228692.2|AL445307.1|lncRNA|chr6:163586582:163586733:-	0	-
#Deleted in new
chr6	163759224	163759841	ENSG00000235538.1|AL137005.1|lncRNA|chr6:163759224:163759841:+	0	+
#Deleted in new
chr6	164346488	164346609	ENSG00000226739.1|AL358972.1|lncRNA|chr6:164346488:164346609:-	0	-
#Deleted in new
chr6	164348299	164348644	ENSG00000226739.1|AL358972.1|lncRNA|chr6:164348299:164348644:-	0	-
#Deleted in new
chr6	164827749	164827963	ENSG00000227455.2|AL450345.1|lncRNA|chr6:164827749:164827963:+	0	+
#Deleted in new
chr6	164827749	164831630	ENSG00000227455.2|AL450345.1|lncRNA|chr6:164827749:164831630:+	0	+
#Deleted in new
chr6	164829520	164829617	ENSG00000227455.2|AL450345.1|lncRNA|chr6:164829520:164829617:+	0	+
#Deleted in new
chr6	165293191	165293222	ENSG00000112539.14|C6orf118|pc|chr6:165293191:165293222:-	0	-
#Deleted in new
chr6	165773200	165773271	ENSG00000223942.1|AL590302.1|lncRNA|chr6:165773200:165773271:-	0	-
#Partially deleted in new
chr6	165774898	165775186	ENSG00000223942.1|AL590302.1|lncRNA|chr6:165774898:165775186:-	0	-
#Deleted in new
chr6	165908801	165909080	ENSG00000223414.2|LINC00473|lncRNA|chr6:165908801:165909080:-	0	-
#Deleted in new
chr6	165910807	165910932	ENSG00000223414.2|LINC00473|lncRNA|chr6:165910807:165910932:-	0	-
#Deleted in new
chr6	165939455	165940766	ENSG00000223414.2|LINC00473|lncRNA|chr6:165939455:165940766:-	0	-
#Deleted in new
chr6	165940588	165940766	ENSG00000223414.2|LINC00473|lncRNA|chr6:165940588:165940766:-	0	-
#Deleted in new
chr6	165946771	165947220	ENSG00000223414.2|LINC00473|lncRNA|chr6:165946771:165947220:-	0	-
#Deleted in new
chr6	165948222	165949914	ENSG00000223414.2|LINC00473|lncRNA|chr6:165948222:165949914:-	0	-
#Deleted in new
chr6	165948463	165948608	ENSG00000223414.2|LINC00473|lncRNA|chr6:165948463:165948608:-	0	-
#Deleted in new
chr6	165949254	165949619	ENSG00000223414.2|LINC00473|lncRNA|chr6:165949254:165949619:-	0	-
#Deleted in new
chr6	165949254	165949914	ENSG00000223414.2|LINC00473|lncRNA|chr6:165949254:165949914:-	0	-
#Partially deleted in new
chr6	166099664	166100060	ENSG00000231297.3|AL627443.1|lncRNA|chr6:166099664:166100060:+	0	+
#Deleted in new
chr6	166100709	166100761	ENSG00000231297.3|AL627443.1|lncRNA|chr6:166100709:166100761:+	0	+
#Deleted in new
chr6	166236968	166237040	ENSG00000233365.2|AL121956.1|lncRNA|chr6:166236968:166237040:+	0	+
#Deleted in new
chr6	166254971	166255024	ENSG00000233365.2|AL121956.1|lncRNA|chr6:166254971:166255024:+	0	+
#Deleted in new
chr6	166256740	166256947	ENSG00000233365.2|AL121956.1|lncRNA|chr6:166256740:166256947:+	0	+
#Deleted in new
chr6	166369465	166369469	ENSG00000060762.18|MPC1|pc|chr6:166369465:166369469:-	0	-
#Partially deleted in new
chr6	166383188	166384824	ENSG00000261420.1|AL022069.1|lncRNA|chr6:166383188:166384824:+	0	+
#Partially deleted in new
chr6	166388135	166389920	ENSG00000280057.1|AL022069.2|lncRNA|chr6:166388135:166389920:+	0	+
#Deleted in new
chr6	166439888	166440345	ENSG00000071242.11|RPS6KA2|pc|chr6:166439888:166440345:-	0	-
#Deleted in new
chr6	166460662	166460838	ENSG00000232082.1|RPS6KA2-IT1|lncRNA|chr6:166460662:166460838:-	0	-
#Deleted in new
chr6	166475725	166475839	ENSG00000071242.11|RPS6KA2|pc|chr6:166475725:166475839:-	0	-
#Deleted in new
chr6	166542285	166542450	ENSG00000071242.11|RPS6KA2|pc|chr6:166542285:166542450:-	0	-
#Deleted in new
chr6	166544599	166544690	ENSG00000071242.11|RPS6KA2|pc|chr6:166544599:166544690:-	0	-
#Partially deleted in new
chr6	16666967	16667552	ENSG00000124788.17|ATXN1|pc|chr6:16666967:16667552:-	0	-
#Deleted in new
chr6	166903697	166903788	ENSG00000231654.1|RPS6KA2-AS1|lncRNA|chr6:166903697:166903788:+	0	+
#Deleted in new
chr6	166904299	166904835	ENSG00000231654.1|RPS6KA2-AS1|lncRNA|chr6:166904299:166904835:+	0	+
#Deleted in new
chr6	166906357	166906451	ENSG00000071242.11|RPS6KA2|pc|chr6:166906357:166906451:-	0	-
#Partially deleted in new
chr6	166933424	166933913	ENSG00000026297.15|RNASET2|pc|chr6:166933424:166933913:-	0	-
#Deleted in new
chr6	166938574	166938610	ENSG00000026297.15|RNASET2|pc|chr6:166938574:166938610:-	0	-
#Deleted in new
chr6	166938611	166938653	ENSG00000026297.15|RNASET2|pc|chr6:166938611:166938653:-	0	-
#Deleted in new
chr6	166943678	166943684	ENSG00000026297.15|RNASET2|pc|chr6:166943678:166943684:-	0	-
#Deleted in new
chr6	166943767	166943809	ENSG00000026297.15|RNASET2|pc|chr6:166943767:166943809:-	0	-
#Deleted in new
chr6	166943823	166943841	ENSG00000026297.15|RNASET2|pc|chr6:166943823:166943841:-	0	-
#Deleted in new
chr6	166943994	166944053	ENSG00000026297.15|RNASET2|pc|chr6:166943994:166944053:-	0	-
#Deleted in new
chr6	166945261	166945274	ENSG00000026297.15|RNASET2|pc|chr6:166945261:166945274:-	0	-
#Deleted in new
chr6	166945356	166945418	ENSG00000026297.15|RNASET2|pc|chr6:166945356:166945418:-	0	-
#Deleted in new
chr6	166955494	166955627	ENSG00000026297.15|RNASET2|pc|chr6:166955494:166955627:-	0	-
#Deleted in new
chr6	166956096	166956124	ENSG00000249141.1|AL159163.1|pc|chr6:166956096:166956124:-	0	-
#Deleted in new
chr6	166956096	166956191	ENSG00000026297.15|RNASET2|pc|chr6:166956096:166956191:-	0	-
#Partially deleted in new
chr6	166956096	166956543	ENSG00000026297.15|RNASET2|pc|chr6:166956096:166956543:-	0	-
#Deleted in new
chr6	166956948	166957141	ENSG00000026297.15|RNASET2|pc|chr6:166956948:166957141:-	0	-
#Deleted in new
chr6	166956948	166957191	ENSG00000026297.15|RNASET2|pc|chr6:166956948:166957191:-	0	-
#Deleted in new
chr6	166957125	166957184	ENSG00000026297.15|RNASET2|pc|chr6:166957125:166957184:-	0	-
#Deleted in new
chr6	166969625	166969812	ENSG00000227598.1|Z94721.1|lncRNA|chr6:166969625:166969812:-	0	-
#Deleted in new
chr6	166972738	166972788	ENSG00000227598.1|Z94721.1|lncRNA|chr6:166972738:166972788:-	0	-
#Deleted in new
chr6	166998917	166999065	ENSG00000227598.1|Z94721.1|lncRNA|chr6:166998917:166999065:-	0	-
#Partially deleted in new
chr6	167024781	167025211	ENSG00000213066.11|FGFR1OP|pc|chr6:167024781:167025211:+	0	+
#Split in new
chr6	167039903	167052713	ENSG00000213066.11|FGFR1OP|pc|chr6:167039903:167052713:+	0	+
#Deleted in new
chr6	167122768	167123223	ENSG00000112486.15|CCR6|pc|chr6:167122768:167123223:+	0	+
#Deleted in new
chr6	167122770	167122832	ENSG00000112486.15|CCR6|pc|chr6:167122770:167122832:+	0	+
#Deleted in new
chr6	167123118	167123223	ENSG00000112486.15|CCR6|pc|chr6:167123118:167123223:+	0	+
#Deleted in new
chr6	167134933	167135066	ENSG00000272980.4|Z94721.2|lncRNA|chr6:167134933:167135066:+	0	+
#Deleted in new
chr6	167146413	167146655	ENSG00000166984.11|TCP10L2|pc|chr6:167146413:167146655:+	0	+
#Deleted in new
chr6	167149389	167149484	ENSG00000166984.11|TCP10L2|pc|chr6:167149389:167149484:+	0	+
#Deleted in new
chr6	167149479	167149484	ENSG00000166984.11|TCP10L2|pc|chr6:167149479:167149484:+	0	+
#Deleted in new
chr6	167149956	167150073	ENSG00000166984.11|TCP10L2|pc|chr6:167149956:167150073:+	0	+
#Deleted in new
chr6	167164400	167164560	ENSG00000166984.11|TCP10L2|pc|chr6:167164400:167164560:+	0	+
#Deleted in new
chr6	167165208	167165308	ENSG00000166984.11|TCP10L2|pc|chr6:167165208:167165308:+	0	+
#Deleted in new
chr6	167170592	167170722	ENSG00000166984.11|TCP10L2|pc|chr6:167170592:167170722:+	0	+
#Deleted in new
chr6	167170647	167170722	ENSG00000166984.11|TCP10L2|pc|chr6:167170647:167170722:+	0	+
#Deleted in new
chr6	167170657	167170722	ENSG00000166984.11|TCP10L2|pc|chr6:167170657:167170722:+	0	+
#Deleted in new
chr6	167170670	167170722	ENSG00000166984.11|TCP10L2|pc|chr6:167170670:167170722:+	0	+
#Deleted in new
chr6	167172143	167172277	ENSG00000166984.11|TCP10L2|pc|chr6:167172143:167172277:+	0	+
#Deleted in new
chr6	167172143	167172288	ENSG00000166984.11|TCP10L2|pc|chr6:167172143:167172288:+	0	+
#Deleted in new
chr6	167172143	167172809	ENSG00000166984.11|TCP10L2|pc|chr6:167172143:167172809:+	0	+
#Deleted in new
chr6	167176996	167177134	ENSG00000166984.11|TCP10L2|pc|chr6:167176996:167177134:+	0	+
#Deleted in new
chr6	167180632	167180733	ENSG00000166984.11|TCP10L2|pc|chr6:167180632:167180733:+	0	+
#Deleted in new
chr6	167193627	167193779	ENSG00000166984.11|TCP10L2|pc|chr6:167193627:167193779:+	0	+
#Deleted in new
chr6	167228299	167228397	ENSG00000280707.2|AL353747.4|lncRNA|chr6:167228299:167228397:+	0	+
#Deleted in new
chr6	167228306	167228397	ENSG00000280707.2|AL353747.4|lncRNA|chr6:167228306:167228397:+	0	+
#Deleted in new
chr6	167228363	167228397	ENSG00000280707.2|AL353747.4|lncRNA|chr6:167228363:167228397:+	0	+
#Deleted in new
chr6	167231826	167231957	ENSG00000280707.2|AL353747.4|lncRNA|chr6:167231826:167231957:+	0	+
#Deleted in new
chr6	167231859	167231957	ENSG00000280707.2|AL353747.4|lncRNA|chr6:167231859:167231957:+	0	+
#Deleted in new
chr6	167232478	167232560	ENSG00000280707.2|AL353747.4|lncRNA|chr6:167232478:167232560:+	0	+
#Deleted in new
chr6	167233242	167233645	ENSG00000280707.2|AL353747.4|lncRNA|chr6:167233242:167233645:+	0	+
#Deleted in new
chr6	167237240	167237511	ENSG00000280707.2|AL353747.4|lncRNA|chr6:167237240:167237511:+	0	+
#Deleted in new
chr6	167237507	167237805	ENSG00000231720.1|AL353747.3|lncRNA|chr6:167237507:167237805:-	0	-
#Deleted in new
chr6	167240199	167240480	ENSG00000231720.1|AL353747.3|lncRNA|chr6:167240199:167240480:-	0	-
#Deleted in new
chr6	167241890	167241965	ENSG00000228648.1|AL353747.2|lncRNA|chr6:167241890:167241965:+	0	+
#Deleted in new
chr6	167245786	167245916	ENSG00000228648.1|AL353747.2|lncRNA|chr6:167245786:167245916:+	0	+
#Deleted in new
chr6	167271168	167271458	ENSG00000112494.9|UNC93A|pc|chr6:167271168:167271458:+	0	+
#Deleted in new
chr6	167325085	167325220	ENSG00000120440.13|TTLL2|pc|chr6:167325085:167325220:+	0	+
#Deleted in new
chr6	167325097	167325220	ENSG00000120440.13|TTLL2|pc|chr6:167325097:167325220:+	0	+
#Deleted in new
chr6	167325104	167325220	ENSG00000120440.13|TTLL2|pc|chr6:167325104:167325220:+	0	+
#Deleted in new
chr6	167338646	167338686	ENSG00000120440.13|TTLL2|pc|chr6:167338646:167338686:+	0	+
#Deleted in new
chr6	167338646	167338803	ENSG00000120440.13|TTLL2|pc|chr6:167338646:167338803:+	0	+
#Deleted in new
chr6	167348836	167348953	ENSG00000120440.13|TTLL2|pc|chr6:167348836:167348953:+	0	+
#Partially deleted in new
chr6	167373890	167376704	ENSG00000203690.11|TCP10|pc|chr6:167373890:167376704:-	0	-
#Deleted in new
chr6	167373895	167374451	ENSG00000203690.11|TCP10|pc|chr6:167373895:167374451:-	0	-
#Deleted in new
chr6	167374350	167374451	ENSG00000203690.11|TCP10|pc|chr6:167374350:167374451:-	0	-
#Partially deleted in new
chr6	167374350	167375801	ENSG00000203690.11|TCP10|pc|chr6:167374350:167375801:-	0	-
#Partially deleted in new
chr6	167376545	167378092	ENSG00000203690.11|TCP10|pc|chr6:167376545:167378092:-	0	-
#Deleted in new
chr6	167377858	167378092	ENSG00000203690.11|TCP10|pc|chr6:167377858:167378092:-	0	-
#Deleted in new
chr6	167377954	167378092	ENSG00000203690.11|TCP10|pc|chr6:167377954:167378092:-	0	-
#Deleted in new
chr6	167682332	167682447	ENSG00000203688.4|LINC02487|lncRNA|chr6:167682332:167682447:-	0	-
#Deleted in new
chr6	167683719	167683787	ENSG00000203688.4|LINC02487|lncRNA|chr6:167683719:167683787:-	0	-
#Deleted in new
chr6	167784536	167785496	ENSG00000146521.9|LINC01558|lncRNA|chr6:167784536:167785496:-	0	-
#Deleted in new
chr6	167786819	167787607	ENSG00000146521.9|LINC01558|lncRNA|chr6:167786819:167787607:-	0	-
#Deleted in new
chr6	167787313	167787607	ENSG00000146521.9|LINC01558|lncRNA|chr6:167787313:167787607:-	0	-
#Deleted in new
chr6	167790946	167791093	ENSG00000146521.9|LINC01558|lncRNA|chr6:167790946:167791093:-	0	-
#Deleted in new
chr6	167978079	167978370	ENSG00000235994.4|AL049698.1|lncRNA|chr6:167978079:167978370:-	0	-
#Deleted in new
chr6	167979544	167979776	ENSG00000235994.4|AL049698.1|lncRNA|chr6:167979544:167979776:-	0	-
#Deleted in new
chr6	167994171	167994464	ENSG00000229921.6|KIF25-AS1|lncRNA|chr6:167994171:167994464:-	0	-
#Deleted in new
chr6	167995512	167996103	ENSG00000229921.6|KIF25-AS1|lncRNA|chr6:167995512:167996103:-	0	-
#Partially deleted in new
chr6	167996205	167997077	ENSG00000229921.6|KIF25-AS1|lncRNA|chr6:167996205:167997077:-	0	-
#Partially deleted in new
chr6	167996237	167996601	ENSG00000229921.6|KIF25-AS1|lncRNA|chr6:167996237:167996601:-	0	-
#Deleted in new
chr6	167996240	167996343	ENSG00000125337.16|KIF25|pc|chr6:167996240:167996343:+	0	+
#Deleted in new
chr6	167996905	167997077	ENSG00000229921.6|KIF25-AS1|lncRNA|chr6:167996905:167997077:-	0	-
#Deleted in new
chr6	167999091	167999320	ENSG00000125337.16|KIF25|pc|chr6:167999091:167999320:+	0	+
#Deleted in new
chr6	168002542	168002659	ENSG00000125337.16|KIF25|pc|chr6:168002542:168002659:+	0	+
#Deleted in new
chr6	168003613	168003703	ENSG00000125337.16|KIF25|pc|chr6:168003613:168003703:+	0	+
#Deleted in new
chr6	168029491	168029524	ENSG00000125337.16|KIF25|pc|chr6:168029491:168029524:+	0	+
#Deleted in new
chr6	168029491	168029677	ENSG00000125337.16|KIF25|pc|chr6:168029491:168029677:+	0	+
#Deleted in new
chr6	168035741	168035773	ENSG00000125337.16|KIF25|pc|chr6:168035741:168035773:+	0	+
#Deleted in new
chr6	168035741	168036147	ENSG00000125337.16|KIF25|pc|chr6:168035741:168036147:+	0	+
#Partially deleted in new
chr6	168055744	168057339	ENSG00000153303.16|FRMD1|pc|chr6:168055744:168057339:-	0	-
#Deleted in new
chr6	168057504	168057723	ENSG00000153303.16|FRMD1|pc|chr6:168057504:168057723:-	0	-
#Deleted in new
chr6	168059123	168059188	ENSG00000153303.16|FRMD1|pc|chr6:168059123:168059188:-	0	-
#Partially deleted in new
chr6	168064904	168066831	ENSG00000153303.16|FRMD1|pc|chr6:168064904:168066831:-	0	-
#Deleted in new
chr6	168065898	168065977	ENSG00000153303.16|FRMD1|pc|chr6:168065898:168065977:-	0	-
#Deleted in new
chr6	168065898	168065978	ENSG00000153303.16|FRMD1|pc|chr6:168065898:168065978:-	0	-
#Deleted in new
chr6	168066238	168066334	ENSG00000153303.16|FRMD1|pc|chr6:168066238:168066334:-	0	-
#Partially deleted in new
chr6	168066754	168067129	ENSG00000153303.16|FRMD1|pc|chr6:168066754:168067129:-	0	-
#Deleted in new
chr6	168067068	168067129	ENSG00000153303.16|FRMD1|pc|chr6:168067068:168067129:-	0	-
#Deleted in new
chr6	168075244	168075335	ENSG00000153303.16|FRMD1|pc|chr6:168075244:168075335:-	0	-
#Deleted in new
chr6	168075738	168075866	ENSG00000153303.16|FRMD1|pc|chr6:168075738:168075866:-	0	-
#Partially deleted in new
chr6	168078881	168079024	ENSG00000153303.16|FRMD1|pc|chr6:168078881:168079024:-	0	-
#Partially deleted in new
chr6	168078881	168079159	ENSG00000153303.16|FRMD1|pc|chr6:168078881:168079159:-	0	-
#Deleted in new
chr6	168079105	168079177	ENSG00000153303.16|FRMD1|pc|chr6:168079105:168079177:-	0	-
#Deleted in new
chr6	168081342	168081529	ENSG00000153303.16|FRMD1|pc|chr6:168081342:168081529:-	0	-
#Deleted in new
chr6	168081342	168081557	ENSG00000153303.16|FRMD1|pc|chr6:168081342:168081557:-	0	-
#Deleted in new
chr6	168194357	168194688	ENSG00000234768.1|AL611929.1|lncRNA|chr6:168194357:168194688:+	0	+
#Deleted in new
chr6	168204383	168204501	ENSG00000234768.1|AL611929.1|lncRNA|chr6:168204383:168204501:+	0	+
#Deleted in new
chr6	168225278	168225524	ENSG00000237987.1|AL606970.4|lncRNA|chr6:168225278:168225524:-	0	-
#Deleted in new
chr6	168226308	168226517	ENSG00000237987.1|AL606970.4|lncRNA|chr6:168226308:168226517:-	0	-
#Deleted in new
chr6	168229731	168229854	ENSG00000228361.2|AL606970.2|lncRNA|chr6:168229731:168229854:+	0	+
#Deleted in new
chr6	168239024	168239109	ENSG00000228361.2|AL606970.2|lncRNA|chr6:168239024:168239109:+	0	+
#Deleted in new
chr6	168240453	168240715	ENSG00000228361.2|AL606970.2|lncRNA|chr6:168240453:168240715:+	0	+
#Deleted in new
chr6	168242937	168243075	ENSG00000234647.2|AL606970.3|lncRNA|chr6:168242937:168243075:+	0	+
#Deleted in new
chr6	168243013	168243453	ENSG00000234647.2|AL606970.3|lncRNA|chr6:168243013:168243453:+	0	+
#Deleted in new
chr6	168258867	168259376	ENSG00000234647.2|AL606970.3|lncRNA|chr6:168258867:168259376:+	0	+
#Deleted in new
chr6	168259664	168259700	ENSG00000234647.2|AL606970.3|lncRNA|chr6:168259664:168259700:+	0	+
#Deleted in new
chr6	168259664	168259890	ENSG00000234647.2|AL606970.3|lncRNA|chr6:168259664:168259890:+	0	+
#Partially deleted in new
chr6	168260667	168261370	ENSG00000234647.2|AL606970.3|lncRNA|chr6:168260667:168261370:+	0	+
#Deleted in new
chr6	168292829	168293941	ENSG00000164488.11|DACT2|pc|chr6:168292829:168293941:-	0	-
#Deleted in new
chr6	168294132	168294197	ENSG00000164488.11|DACT2|pc|chr6:168294132:168294197:-	0	-
#Deleted in new
chr6	168294632	168294704	ENSG00000164488.11|DACT2|pc|chr6:168294632:168294704:-	0	-
#Partially deleted in new
chr6	168298068	168300589	ENSG00000224417.2|AL606970.1|lncRNA|chr6:168298068:168300589:-	0	-
#Deleted in new
chr6	168302076	168302114	ENSG00000224417.2|AL606970.1|lncRNA|chr6:168302076:168302114:-	0	-
#Partially deleted in new
chr6	168319653	168319710	ENSG00000164488.11|DACT2|pc|chr6:168319653:168319710:-	0	-
#Deleted in new
chr6	168655395	168655490	ENSG00000112562.18|SMOC2|pc|chr6:168655395:168655490:+	0	+
#Deleted in new
chr6	168673212	168673445	ENSG00000112562.18|SMOC2|pc|chr6:168673212:168673445:+	0	+
#Deleted in new
chr6	168716605	168716685	ENSG00000235815.1|AL136099.1|lncRNA|chr6:168716605:168716685:+	0	+
#Deleted in new
chr6	168720961	168721021	ENSG00000235815.1|AL136099.1|lncRNA|chr6:168720961:168721021:+	0	+
#Deleted in new
chr6	168723078	168723495	ENSG00000235815.1|AL136099.1|lncRNA|chr6:168723078:168723495:+	0	+
#Deleted in new
chr6	168820422	168820656	ENSG00000280665.1|AL513210.1|lncRNA|chr6:168820422:168820656:+	0	+
#Deleted in new
chr6	168962609	168962901	ENSG00000225879.1|AL109924.1|lncRNA|chr6:168962609:168962901:-	0	-
#Partially deleted in new
chr6	168963719	168964341	ENSG00000225879.1|AL109924.1|lncRNA|chr6:168963719:168964341:-	0	-
#Deleted in new
chr6	169033380	169034050	ENSG00000279810.1|AL109924.4|lncRNA|chr6:169033380:169034050:+	0	+
#Deleted in new
chr6	169034196	169035060	ENSG00000229720.1|AL109924.2|lncRNA|chr6:169034196:169035060:-	0	-
#Deleted in new
chr6	169067817	169067982	ENSG00000234519.1|AL109924.3|lncRNA|chr6:169067817:169067982:+	0	+
#Deleted in new
chr6	169067898	169067982	ENSG00000234519.1|AL109924.3|lncRNA|chr6:169067898:169067982:+	0	+
#Deleted in new
chr6	169069188	169069416	ENSG00000234519.1|AL109924.3|lncRNA|chr6:169069188:169069416:+	0	+
#Deleted in new
chr6	169069204	169069424	ENSG00000234519.1|AL109924.3|lncRNA|chr6:169069204:169069424:+	0	+
#Deleted in new
chr6	169161067	169161214	ENSG00000223485.2|LINC01615|lncRNA|chr6:169161067:169161214:-	0	-
#Deleted in new
chr6	169162133	169162301	ENSG00000223485.2|LINC01615|lncRNA|chr6:169162133:169162301:-	0	-
#Deleted in new
chr6	169162642	169162856	ENSG00000223485.2|LINC01615|lncRNA|chr6:169162642:169162856:-	0	-
#Deleted in new
chr6	169162642	169162924	ENSG00000223485.2|LINC01615|lncRNA|chr6:169162642:169162924:-	0	-
#Deleted in new
chr6	169175303	169175671	ENSG00000261039.2|LINC02544|lncRNA|chr6:169175303:169175671:-	0	-
#Deleted in new
chr6	169179275	169179394	ENSG00000261039.2|LINC02544|lncRNA|chr6:169179275:169179394:-	0	-
#Deleted in new
chr6	169182683	169182740	ENSG00000261039.2|LINC02544|lncRNA|chr6:169182683:169182740:-	0	-
#Deleted in new
chr6	169213253	169213578	ENSG00000226445.1|BX322234.1|lncRNA|chr6:169213253:169213578:+	0	+
#Deleted in new
chr6	169214173	169214487	ENSG00000226445.1|BX322234.1|lncRNA|chr6:169214173:169214487:+	0	+
#Deleted in new
chr6	169251987	169252151	ENSG00000186340.14|THBS2|pc|chr6:169251987:169252151:-	0	-
#Deleted in new
chr6	169289124	169289216	ENSG00000233085.5|BX322234.2|lncRNA|chr6:169289124:169289216:-	0	-
#Deleted in new
chr6	169369997	169370400	ENSG00000226194.5|LINC02519|lncRNA|chr6:169369997:169370400:-	0	-
#Deleted in new
chr6	169388200	169388385	ENSG00000226194.5|LINC02519|lncRNA|chr6:169388200:169388385:-	0	-
#Deleted in new
chr6	169426419	169427069	ENSG00000272848.1|AL009176.1|lncRNA|chr6:169426419:169427069:-	0	-
#Partially deleted in new
chr6	169457211	169457634	ENSG00000184465.15|WDR27|pc|chr6:169457211:169457634:-	0	-
#Partially deleted in new
chr6	169457354	169457634	ENSG00000184465.15|WDR27|pc|chr6:169457354:169457634:-	0	-
#Deleted in new
chr6	169558320	169559927	ENSG00000184465.15|WDR27|pc|chr6:169558320:169559927:-	0	-
#Deleted in new
chr6	169572418	169572540	ENSG00000184465.15|WDR27|pc|chr6:169572418:169572540:-	0	-
#Deleted in new
chr6	169663562	169663649	ENSG00000184465.15|WDR27|pc|chr6:169663562:169663649:-	0	-
#Partially deleted in new
chr6	169663562	169663723	ENSG00000184465.15|WDR27|pc|chr6:169663562:169663723:-	0	-
#Partially deleted in new
chr6	169664176	169664632	ENSG00000184465.15|WDR27|pc|chr6:169664176:169664632:-	0	-
#Partially deleted in new
chr6	169664285	169665556	ENSG00000184465.15|WDR27|pc|chr6:169664285:169665556:-	0	-
#Deleted in new
chr6	169664769	169665092	ENSG00000184465.15|WDR27|pc|chr6:169664769:169665092:-	0	-
#Deleted in new
chr6	169668606	169668776	ENSG00000184465.15|WDR27|pc|chr6:169668606:169668776:-	0	-
#Partially deleted in new
chr6	169669520	169672396	ENSG00000184465.15|WDR27|pc|chr6:169669520:169672396:-	0	-
#Deleted in new
chr6	169689126	169689308	ENSG00000184465.15|WDR27|pc|chr6:169689126:169689308:-	0	-
#Deleted in new
chr6	169701550	169701586	ENSG00000184465.15|WDR27|pc|chr6:169701550:169701586:-	0	-
#Deleted in new
chr6	169701550	169701653	ENSG00000184465.15|WDR27|pc|chr6:169701550:169701653:-	0	-
#Partially deleted in new
chr6	169701550	169702048	ENSG00000184465.15|WDR27|pc|chr6:169701550:169702048:-	0	-
#Deleted in new
chr6	169725090	169725316	ENSG00000232640.1|AL354892.2|lncRNA|chr6:169725090:169725316:-	0	-
#Deleted in new
chr6	169725420	169725566	ENSG00000130024.14|PHF10|pc|chr6:169725420:169725566:-	0	-
#Deleted in new
chr6	169725420	169725569	ENSG00000232640.1|AL354892.2|lncRNA|chr6:169725420:169725569:-	0	-
#Deleted in new
chr6	169725503	169725539	ENSG00000227704.1|AL354892.1|lncRNA|chr6:169725503:169725539:+	0	+
#Deleted in new
chr6	169725826	169725854	ENSG00000232640.1|AL354892.2|lncRNA|chr6:169725826:169725854:-	0	-
#Deleted in new
chr6	169738693	169738992	ENSG00000227704.1|AL354892.1|lncRNA|chr6:169738693:169738992:+	0	+
#Deleted in new
chr6	169751796	169751937	ENSG00000130023.15|ERMARD|pc|chr6:169751796:169751937:+	0	+
#Deleted in new
chr6	169753037	169753181	ENSG00000130023.15|ERMARD|pc|chr6:169753037:169753181:+	0	+
#Deleted in new
chr6	169753286	169753372	ENSG00000130023.15|ERMARD|pc|chr6:169753286:169753372:+	0	+
#Deleted in new
chr6	169753316	169753372	ENSG00000130023.15|ERMARD|pc|chr6:169753316:169753372:+	0	+
#Partially deleted in new
chr6	169767014	169768171	ENSG00000130023.15|ERMARD|pc|chr6:169767014:169768171:+	0	+
#Deleted in new
chr6	169770412	169772042	ENSG00000266896.1|AL354892.3|lncRNA|chr6:169770412:169772042:+	0	+
#Partially deleted in new
chr6	169776333	169776411	ENSG00000130023.15|ERMARD|pc|chr6:169776333:169776411:+	0	+
#Deleted in new
chr6	169798736	169798825	ENSG00000229214.1|LINC00242|lncRNA|chr6:169798736:169798825:-	0	-
#Split in new
chr6	169809584	169810102	ENSG00000236173.1|AL049612.1|lncRNA|chr6:169809584:169810102:-	0	-
#Partially deleted in new
chr6	170162516	170162728	ENSG00000232197.1|AL596442.1|lncRNA|chr6:170162516:170162728:+	0	+
#Partially deleted in new
chr6	170254333	170255377	ENSG00000230960.1|AL109910.1|lncRNA|chr6:170254333:170255377:-	0	-
#Deleted in new
chr6	170258369	170258501	ENSG00000230960.1|AL109910.1|lncRNA|chr6:170258369:170258501:-	0	-
#Deleted in new
chr6	170262415	170262569	ENSG00000230960.1|AL109910.1|lncRNA|chr6:170262415:170262569:-	0	-
#Partially deleted in new
chr6	170266668	170268285	ENSG00000271820.1|AL109910.2|lncRNA|chr6:170266668:170268285:-	0	-
#Deleted in new
chr6	170272473	170275430	ENSG00000227508.6|LINC01624|lncRNA|chr6:170272473:170275430:+	0	+
#Deleted in new
chr6	170275330	170275588	ENSG00000271820.1|AL109910.2|lncRNA|chr6:170275330:170275588:-	0	-
#Deleted in new
chr6	170275373	170275430	ENSG00000227508.6|LINC01624|lncRNA|chr6:170275373:170275430:+	0	+
#Deleted in new
chr6	170276684	170276762	ENSG00000271820.1|AL109910.2|lncRNA|chr6:170276684:170276762:-	0	-
#Deleted in new
chr6	170276938	170277023	ENSG00000227508.6|LINC01624|lncRNA|chr6:170276938:170277023:+	0	+
#Partially deleted in new
chr6	170295320	170295453	ENSG00000112584.13|FAM120B|pc|chr6:170295320:170295453:+	0	+
#Deleted in new
chr6	170306525	170306565	ENSG00000198719.8|DLL1|pc|chr6:170306525:170306565:-	0	-
#Deleted in new
chr6	170306755	170306842	ENSG00000112584.13|FAM120B|pc|chr6:170306755:170306842:+	0	+
#Deleted in new
chr6	170306757	170306842	ENSG00000112584.13|FAM120B|pc|chr6:170306757:170306842:+	0	+
#Duplicated in new
chr6	170404762	170405348	ENSG00000112584.13|FAM120B|pc|chr6:170404762:170405348:+	0	+
#Deleted in new
chr6	170414138	170419325	ENSG00000261003.1|AL008628.1|lncRNA|chr6:170414138:170419325:+	0	+
#Deleted in new
chr6	170567225	170567505	ENSG00000112592.13|TBP|pc|chr6:170567225:170567505:+	0	+
#Deleted in new
chr6	170578481	170578656	ENSG00000071994.10|PDCD2|pc|chr6:170578481:170578656:-	0	-
#Deleted in new
chr6	170578506	170578656	ENSG00000071994.10|PDCD2|pc|chr6:170578506:170578656:-	0	-
#Partially deleted in new
chr6	170581088	170583188	ENSG00000071994.10|PDCD2|pc|chr6:170581088:170583188:-	0	-
#Deleted in new
chr6	170581744	170582265	ENSG00000071994.10|PDCD2|pc|chr6:170581744:170582265:-	0	-
#Deleted in new
chr6	170581746	170582265	ENSG00000071994.10|PDCD2|pc|chr6:170581746:170582265:-	0	-
#Deleted in new
chr6	170581747	170582265	ENSG00000071994.10|PDCD2|pc|chr6:170581747:170582265:-	0	-
#Partially deleted in new
chr6	170584054	170584226	ENSG00000071994.10|PDCD2|pc|chr6:170584054:170584226:-	0	-
#Deleted in new
chr6	170695312	170695404	ENSG00000234986.1|AL731661.2|lncRNA|chr6:170695312:170695404:+	0	+
#Deleted in new
chr6	170725196	170725396	ENSG00000213863.2|AL731661.1|lncRNA|chr6:170725196:170725396:+	0	+
#Deleted in new
chr6	170727930	170728488	ENSG00000213863.2|AL731661.1|lncRNA|chr6:170727930:170728488:+	0	+
#Deleted in new
chr6	170735750	170735885	ENSG00000230423.1|AL731684.2|lncRNA|chr6:170735750:170735885:+	0	+
#Deleted in new
chr6	170736172	170736394	ENSG00000225532.1|AL731684.1|lncRNA|chr6:170736172:170736394:-	0	-
#Partially deleted in new
chr6	170736347	170736545	ENSG00000230423.1|AL731684.2|lncRNA|chr6:170736347:170736545:+	0	+
#Deleted in new
chr6	170737500	170737551	ENSG00000225532.1|AL731684.1|lncRNA|chr6:170737500:170737551:-	0	-
#Deleted in new
chr6	170737611	170737777	ENSG00000225532.1|AL731684.1|lncRNA|chr6:170737611:170737777:-	0	-
#Deleted in new
chr6	17110494	17110880	ENSG00000230873.8|STMND1|pc|chr6:17110494:17110880:+	0	+
#Deleted in new
chr6	17651833	17651926	ENSG00000124789.11|NUP153|pc|chr6:17651833:17651926:-	0	-
#Deleted in new
chr6	17812043	17812610	ENSG00000137177.19|KIF13A|pc|chr6:17812043:17812610:-	0	-
#Partially deleted in new
chr6	17950405	17951429	ENSG00000137177.19|KIF13A|pc|chr6:17950405:17951429:-	0	-
#Partially deleted in new
chr6	18128310	18130780	ENSG00000137364.4|TPMT|pc|chr6:18128310:18130780:-	0	-
#Deleted in new
chr6	182365	182474	ENSG00000263667.1|AL035696.3|lncRNA|chr6:182365:182474:-	0	-
#Deleted in new
chr6	18401956	18402095	ENSG00000137393.9|RNF144B|pc|chr6:18401956:18402095:+	0	+
#Deleted in new
chr6	18522738	18522835	ENSG00000283408.1|MIR548A1HG|lncRNA|chr6:18522738:18522835:+	0	+
#Deleted in new
chr6	18522746	18522835	ENSG00000283408.1|MIR548A1HG|lncRNA|chr6:18522746:18522835:+	0	+
#Deleted in new
chr6	18526054	18526130	ENSG00000283408.1|MIR548A1HG|lncRNA|chr6:18526054:18526130:+	0	+
#Deleted in new
chr6	187735	187906	ENSG00000263667.1|AL035696.3|lncRNA|chr6:187735:187906:-	0	-
#Deleted in new
chr6	19388546	19388638	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19388546:19388638:-	0	-
#Deleted in new
chr6	19397416	19397537	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19397416:19397537:-	0	-
#Partially deleted in new
chr6	19534886	19535029	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19534886:19535029:-	0	-
#Partially deleted in new
chr6	19534943	19535029	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19534943:19535029:-	0	-
#Deleted in new
chr6	19600835	19600948	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19600835:19600948:-	0	-
#Deleted in new
chr6	19640480	19640583	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19640480:19640583:-	0	-
#Deleted in new
chr6	19689824	19689874	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19689824:19689874:-	0	-
#Deleted in new
chr6	19689826	19689874	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19689826:19689874:-	0	-
#Deleted in new
chr6	19690724	19690876	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19690724:19690876:-	0	-
#Deleted in new
chr6	19733404	19733474	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19733404:19733474:-	0	-
#Deleted in new
chr6	19740176	19740238	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19740176:19740238:-	0	-
#Deleted in new
chr6	19744030	19744134	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19744030:19744134:-	0	-
#Deleted in new
chr6	19802086	19802156	ENSG00000228412.7|AL022068.1|lncRNA|chr6:19802086:19802156:-	0	-
#Deleted in new
chr6	198164	198509	ENSG00000263667.1|AL035696.3|lncRNA|chr6:198164:198509:-	0	-
#Deleted in new
chr6	20317550	20317739	ENSG00000227803.2|AL158198.1|lncRNA|chr6:20317550:20317739:+	0	+
#Deleted in new
chr6	20402374	20402380	ENSG00000112242.14|E2F3|pc|chr6:20402374:20402380:+	0	+
#Deleted in new
chr6	2043335	2043433	ENSG00000112699.10|GMDS|pc|chr6:2043335:2043433:-	0	-
#Partially deleted in new
chr6	204886	205484	ENSG00000263667.1|AL035696.3|lncRNA|chr6:204886:205484:-	0	-
#Deleted in new
chr6	20756102	20756201	ENSG00000233848.1|AL513188.1|lncRNA|chr6:20756102:20756201:-	0	-
#Partially deleted in new
chr6	20772835	20773058	ENSG00000233848.1|AL513188.1|lncRNA|chr6:20772835:20773058:-	0	-
#Deleted in new
chr6	20799744	20799818	ENSG00000233848.1|AL513188.1|lncRNA|chr6:20799744:20799818:-	0	-
#Deleted in new
chr6	21511535	21511895	ENSG00000280989.1|LINC00581|lncRNA|chr6:21511535:21511895:-	0	-
#Deleted in new
chr6	21758392	21758534	ENSG00000272168.6|CASC15|lncRNA|chr6:21758392:21758534:+	0	+
#Deleted in new
chr6	2175931	2175991	ENSG00000112699.10|GMDS|pc|chr6:2175931:2175991:-	0	-
#Deleted in new
chr6	22020338	22020542	ENSG00000272168.6|CASC15|lncRNA|chr6:22020338:22020542:+	0	+
#Deleted in new
chr6	22113916	22114037	ENSG00000272168.6|CASC15|lncRNA|chr6:22113916:22114037:+	0	+
#Deleted in new
chr6	22173997	22174062	ENSG00000272168.6|CASC15|lncRNA|chr6:22173997:22174062:+	0	+
#Deleted in new
chr6	22205184	22205259	ENSG00000272168.6|CASC15|lncRNA|chr6:22205184:22205259:+	0	+
#Deleted in new
chr6	22317715	22317798	ENSG00000272168.6|CASC15|lncRNA|chr6:22317715:22317798:+	0	+
#Deleted in new
chr6	22336848	22336942	ENSG00000272168.6|CASC15|lncRNA|chr6:22336848:22336942:+	0	+
#Deleted in new
chr6	22349228	22349493	ENSG00000272168.6|CASC15|lncRNA|chr6:22349228:22349493:+	0	+
#Deleted in new
chr6	22352560	22352651	ENSG00000272168.6|CASC15|lncRNA|chr6:22352560:22352651:+	0	+
#Deleted in new
chr6	22368213	22368328	ENSG00000272168.6|CASC15|lncRNA|chr6:22368213:22368328:+	0	+
#Deleted in new
chr6	2248836	2248926	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2248836:2248926:+	0	+
#Deleted in new
chr6	22592433	22592587	ENSG00000228772.2|AL033539.1|lncRNA|chr6:22592433:22592587:-	0	-
#Deleted in new
chr6	2263600	2263684	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2263600:2263684:+	0	+
#Deleted in new
chr6	2263600	2264128	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2263600:2264128:+	0	+
#Deleted in new
chr6	2269697	2269799	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2269697:2269799:+	0	+
#Deleted in new
chr6	2269697	2270013	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2269697:2270013:+	0	+
#Deleted in new
chr6	22744394	22745068	ENSG00000233358.2|AL035401.1|lncRNA|chr6:22744394:22745068:-	0	-
#Deleted in new
chr6	2283498	2283773	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2283498:2283773:+	0	+
#Deleted in new
chr6	2283498	2283774	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2283498:2283774:+	0	+
#Deleted in new
chr6	2306292	2306526	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2306292:2306526:+	0	+
#Deleted in new
chr6	2329282	2329332	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2329282:2329332:+	0	+
#Deleted in new
chr6	2329282	2329404	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2329282:2329404:+	0	+
#Deleted in new
chr6	23337710	23337796	ENSG00000235743.1|AL139231.1|lncRNA|chr6:23337710:23337796:+	0	+
#Deleted in new
chr6	23341734	23341844	ENSG00000235743.1|AL139231.1|lncRNA|chr6:23341734:23341844:+	0	+
#Deleted in new
chr6	2366943	2367315	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2366943:2367315:+	0	+
#Deleted in new
chr6	24129304	24129697	ENSG00000152954.11|NRSN1|pc|chr6:24129304:24129697:+	0	+
#Deleted in new
chr6	24403191	24403236	ENSG00000124532.14|MRS2|pc|chr6:24403191:24403236:+	0	+
#Deleted in new
chr6	24410726	24410799	ENSG00000124532.14|MRS2|pc|chr6:24410726:24410799:+	0	+
#Partially deleted in new
chr6	24418460	24419241	ENSG00000124532.14|MRS2|pc|chr6:24418460:24419241:+	0	+
#Deleted in new
chr6	24435816	24435880	ENSG00000112293.14|GPLD1|pc|chr6:24435816:24435880:-	0	-
#Deleted in new
chr6	24511829	24511868	ENSG00000112294.12|ALDH5A1|pc|chr6:24511829:24511868:+	0	+
#Deleted in new
chr6	24583060	24583227	ENSG00000137261.13|KIAA0319|pc|chr6:24583060:24583227:-	0	-
#Deleted in new
chr6	24600618	24600709	ENSG00000137261.13|KIAA0319|pc|chr6:24600618:24600709:-	0	-
#Partially deleted in new
chr6	24645896	24646012	ENSG00000137261.13|KIAA0319|pc|chr6:24645896:24646012:-	0	-
#Deleted in new
chr6	24687401	24687693	ENSG00000112304.10|ACOT13|pc|chr6:24687401:24687693:+	0	+
#Deleted in new
chr6	24687404	24687693	ENSG00000112304.10|ACOT13|pc|chr6:24687404:24687693:+	0	+
#Deleted in new
chr6	24706746	24707151	ENSG00000272402.1|AL031775.2|lncRNA|chr6:24706746:24707151:+	0	+
#Deleted in new
chr6	24742301	24742346	ENSG00000224164.1|AL133264.2|lncRNA|chr6:24742301:24742346:+	0	+
#Deleted in new
chr6	24748995	24749148	ENSG00000224164.1|AL133264.2|lncRNA|chr6:24748995:24749148:+	0	+
#Deleted in new
chr6	24749066	24749148	ENSG00000224164.1|AL133264.2|lncRNA|chr6:24749066:24749148:+	0	+
#Partially deleted in new
chr6	24751564	24751921	ENSG00000224164.1|AL133264.2|lncRNA|chr6:24751564:24751921:+	0	+
#Partially deleted in new
chr6	24775412	24775502	ENSG00000112312.9|GMNN|pc|chr6:24775412:24775502:+	0	+
#Deleted in new
chr6	24775466	24775824	ENSG00000112312.9|GMNN|pc|chr6:24775466:24775824:+	0	+
#Partially deleted in new
chr6	24777221	24777736	ENSG00000112312.9|GMNN|pc|chr6:24777221:24777736:+	0	+
#Deleted in new
chr6	2480833	2481118	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2480833:2481118:+	0	+
#Deleted in new
chr6	2480833	2481169	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2480833:2481169:+	0	+
#Deleted in new
chr6	2481986	2482022	ENSG00000250903.8|GMDS-AS1|lncRNA|chr6:2481986:2482022:+	0	+
#Deleted in new
chr6	25053626	25053854	ENSG00000223623.1|AL133268.2|lncRNA|chr6:25053626:25053854:-	0	-
#Deleted in new
chr6	25053999	25054045	ENSG00000223623.1|AL133268.2|lncRNA|chr6:25053999:25054045:-	0	-
#Deleted in new
chr6	25056318	25056664	ENSG00000229313.1|AL133268.3|lncRNA|chr6:25056318:25056664:+	0	+
#Deleted in new
chr6	25057011	25057073	ENSG00000223623.1|AL133268.2|lncRNA|chr6:25057011:25057073:-	0	-
#Deleted in new
chr6	25245355	25245465	ENSG00000235733.2|AL024509.3|lncRNA|chr6:25245355:25245465:-	0	-
#Deleted in new
chr6	25255188	25255306	ENSG00000235733.2|AL024509.3|lncRNA|chr6:25255188:25255306:-	0	-
#Deleted in new
chr6	25260347	25260576	ENSG00000235733.2|AL024509.3|lncRNA|chr6:25260347:25260576:-	0	-
#Deleted in new
chr6	25452043	25452597	ENSG00000079691.17|CARMIL1|pc|chr6:25452043:25452597:+	0	+
#Deleted in new
chr6	25841304	25841807	ENSG00000124564.17|SLC17A3|pc|chr6:25841304:25841807:-	0	-
#Deleted in new
chr6	25962801	25962855	ENSG00000112343.10|TRIM38|pc|chr6:25962801:25962855:+	0	+
#Partially deleted in new
chr6	25983163	25991226	ENSG00000112343.10|TRIM38|pc|chr6:25983163:25991226:+	0	+
#Partially deleted in new
chr6	25983811	25984084	ENSG00000272558.1|U91328.3|lncRNA|chr6:25983811:25984084:-	0	-
#Deleted in new
chr6	25992661	25992918	ENSG00000272462.2|U91328.2|lncRNA|chr6:25992661:25992918:+	0	+
#Deleted in new
chr6	25997902	26001775	ENSG00000272462.2|U91328.2|lncRNA|chr6:25997902:26001775:+	0	+
#Deleted in new
chr6	25999086	25999167	ENSG00000272558.1|U91328.3|lncRNA|chr6:25999086:25999167:-	0	-
#Deleted in new
chr6	26013240	26013757	ENSG00000272810.1|U91328.4|lncRNA|chr6:26013240:26013757:+	0	+
#Deleted in new
chr6	26138053	26139084	ENSG00000180573.9|HIST1H2AC|pc|chr6:26138053:26139084:+	0	+
#Deleted in new
chr6	26138053	26139102	ENSG00000180573.9|HIST1H2AC|pc|chr6:26138053:26139102:+	0	+
#Deleted in new
chr6	26138053	26139116	ENSG00000180573.9|HIST1H2AC|pc|chr6:26138053:26139116:+	0	+
#Deleted in new
chr6	26160764	26161205	ENSG00000283064.1|AL353759.1|lncRNA|chr6:26160764:26161205:-	0	-
#Deleted in new
chr6	26163307	26163676	ENSG00000283064.1|AL353759.1|lncRNA|chr6:26163307:26163676:-	0	-
#Deleted in new
chr6	26170974	26171349	ENSG00000158373.8|HIST1H2BD|pc|chr6:26170974:26171349:+	0	+
#Deleted in new
chr6	26172034	26172802	ENSG00000283064.1|AL353759.1|lncRNA|chr6:26172034:26172802:-	0	-
#Deleted in new
chr6	26172058	26172788	ENSG00000274290.2|HIST1H2BE|pc|chr6:26172058:26172788:+	0	+
#Deleted in new
chr6	26173762	26173897	ENSG00000274290.2|HIST1H2BE|pc|chr6:26173762:26173897:+	0	+
#Deleted in new
chr6	26181166	26181537	ENSG00000274290.2|HIST1H2BE|pc|chr6:26181166:26181537:+	0	+
#Partially deleted in new
chr6	26195594	26196246	ENSG00000282988.1|HIST1H3D|pc|chr6:26195594:26196246:-	0	-
#Deleted in new
chr6	26224198	26224305	ENSG00000274750.2|HIST1H3E|pc|chr6:26224198:26224305:+	0	+
#Split in new
chr6	26224901	26227473	ENSG00000274750.2|HIST1H3E|pc|chr6:26224901:26227473:+	0	+
#Partially deleted in new
chr6	26251650	26253710	ENSG00000275713.2|HIST1H2BH|pc|chr6:26251650:26253710:+	0	+
#Partially deleted in new
chr6	26277608	26278477	ENSG00000158406.4|HIST1H4H|pc|chr6:26277608:26278477:-	0	-
#Deleted in new
chr6	26280898	26281587	ENSG00000158406.4|HIST1H4H|pc|chr6:26280898:26281587:-	0	-
#Deleted in new
chr6	26281054	26281587	ENSG00000158406.4|HIST1H4H|pc|chr6:26281054:26281587:-	0	-
#Deleted in new
chr6	2633604	2633792	ENSG00000164385.8|LINC01600|lncRNA|chr6:2633604:2633792:-	0	-
#Deleted in new
chr6	26365158	26365352	ENSG00000186470.13|BTN3A2|pc|chr6:26365158:26365352:+	0	+
#Deleted in new
chr6	26365169	26365217	ENSG00000186470.13|BTN3A2|pc|chr6:26365169:26365217:+	0	+
#Deleted in new
chr6	26365203	26365217	ENSG00000186470.13|BTN3A2|pc|chr6:26365203:26365217:+	0	+
#Deleted in new
chr6	26365207	26365352	ENSG00000186470.13|BTN3A2|pc|chr6:26365207:26365352:+	0	+
#Deleted in new
chr6	26365227	26365352	ENSG00000186470.13|BTN3A2|pc|chr6:26365227:26365352:+	0	+
#Deleted in new
chr6	26365230	26365352	ENSG00000186470.13|BTN3A2|pc|chr6:26365230:26365352:+	0	+
#Deleted in new
chr6	26365257	26365352	ENSG00000186470.13|BTN3A2|pc|chr6:26365257:26365352:+	0	+
#Deleted in new
chr6	26365263	26365352	ENSG00000186470.13|BTN3A2|pc|chr6:26365263:26365352:+	0	+
#Deleted in new
chr6	26365265	26365352	ENSG00000186470.13|BTN3A2|pc|chr6:26365265:26365352:+	0	+
#Deleted in new
chr6	26365268	26365352	ENSG00000186470.13|BTN3A2|pc|chr6:26365268:26365352:+	0	+
#Deleted in new
chr6	26367974	26368050	ENSG00000186470.13|BTN3A2|pc|chr6:26367974:26368050:+	0	+
#Deleted in new
chr6	26367989	26368050	ENSG00000186470.13|BTN3A2|pc|chr6:26367989:26368050:+	0	+
#Deleted in new
chr6	26367989	26368267	ENSG00000186470.13|BTN3A2|pc|chr6:26367989:26368267:+	0	+
#Partially deleted in new
chr6	26367989	26368729	ENSG00000186470.13|BTN3A2|pc|chr6:26367989:26368729:+	0	+
#Deleted in new
chr6	26368177	26368267	ENSG00000186470.13|BTN3A2|pc|chr6:26368177:26368267:+	0	+
#Deleted in new
chr6	26368182	26368267	ENSG00000186470.13|BTN3A2|pc|chr6:26368182:26368267:+	0	+
#Partially deleted in new
chr6	26368449	26368608	ENSG00000186470.13|BTN3A2|pc|chr6:26368449:26368608:+	0	+
#Deleted in new
chr6	2636935	2637455	ENSG00000228718.1|LINC02521|lncRNA|chr6:2636935:2637455:+	0	+
#Partially deleted in new
chr6	26372692	26375701	ENSG00000186470.13|BTN3A2|pc|chr6:26372692:26375701:+	0	+
#Partially deleted in new
chr6	26373275	26373413	ENSG00000186470.13|BTN3A2|pc|chr6:26373275:26373413:+	0	+
#Partially deleted in new
chr6	26373275	26373606	ENSG00000186470.13|BTN3A2|pc|chr6:26373275:26373606:+	0	+
#Deleted in new
chr6	26373386	26373413	ENSG00000186470.13|BTN3A2|pc|chr6:26373386:26373413:+	0	+
#Deleted in new
chr6	26373386	26373588	ENSG00000186470.13|BTN3A2|pc|chr6:26373386:26373588:+	0	+
#Deleted in new
chr6	26374326	26374373	ENSG00000186470.13|BTN3A2|pc|chr6:26374326:26374373:+	0	+
#Deleted in new
chr6	26374770	26374798	ENSG00000186470.13|BTN3A2|pc|chr6:26374770:26374798:+	0	+
#Deleted in new
chr6	26374770	26374808	ENSG00000186470.13|BTN3A2|pc|chr6:26374770:26374808:+	0	+
#Deleted in new
chr6	26375514	26375737	ENSG00000186470.13|BTN3A2|pc|chr6:26375514:26375737:+	0	+
#Deleted in new
chr6	26375514	26375816	ENSG00000186470.13|BTN3A2|pc|chr6:26375514:26375816:+	0	+
#Split in new
chr6	26375796	26378320	ENSG00000186470.13|BTN3A2|pc|chr6:26375796:26378320:+	0	+
#Split in new
chr6	26376528	26378318	ENSG00000186470.13|BTN3A2|pc|chr6:26376528:26378318:+	0	+
#Deleted in new
chr6	26394297	26394874	ENSG00000124508.16|BTN2A2|pc|chr6:26394297:26394874:+	0	+
#Partially deleted in new
chr6	2639687	2640001	ENSG00000228718.1|LINC02521|lncRNA|chr6:2639687:2640001:+	0	+
#Deleted in new
chr6	26402236	26402412	ENSG00000026950.16|BTN3A1|pc|chr6:26402236:26402412:+	0	+
#Deleted in new
chr6	26402249	26402412	ENSG00000026950.16|BTN3A1|pc|chr6:26402249:26402412:+	0	+
#Deleted in new
chr6	26402257	26402412	ENSG00000026950.16|BTN3A1|pc|chr6:26402257:26402412:+	0	+
#Deleted in new
chr6	26402274	26402412	ENSG00000026950.16|BTN3A1|pc|chr6:26402274:26402412:+	0	+
#Deleted in new
chr6	26402294	26402412	ENSG00000026950.16|BTN3A1|pc|chr6:26402294:26402412:+	0	+
#Deleted in new
chr6	26402307	26402412	ENSG00000026950.16|BTN3A1|pc|chr6:26402307:26402412:+	0	+
#Deleted in new
chr6	26404134	26404227	ENSG00000026950.16|BTN3A1|pc|chr6:26404134:26404227:+	0	+
#Deleted in new
chr6	26404134	26404555	ENSG00000026950.16|BTN3A1|pc|chr6:26404134:26404555:+	0	+
#Deleted in new
chr6	26405357	26405648	ENSG00000026950.16|BTN3A1|pc|chr6:26405357:26405648:+	0	+
#Deleted in new
chr6	26405371	26405648	ENSG00000026950.16|BTN3A1|pc|chr6:26405371:26405648:+	0	+
#Deleted in new
chr6	26405503	26405648	ENSG00000026950.16|BTN3A1|pc|chr6:26405503:26405648:+	0	+
#Deleted in new
chr6	26405541	26405648	ENSG00000026950.16|BTN3A1|pc|chr6:26405541:26405648:+	0	+
#Deleted in new
chr6	26409532	26409733	ENSG00000026950.16|BTN3A1|pc|chr6:26409532:26409733:+	0	+
#Deleted in new
chr6	26409544	26409733	ENSG00000026950.16|BTN3A1|pc|chr6:26409544:26409733:+	0	+
#Deleted in new
chr6	26409582	26409733	ENSG00000026950.16|BTN3A1|pc|chr6:26409582:26409733:+	0	+
#Deleted in new
chr6	26409893	26409914	ENSG00000026950.16|BTN3A1|pc|chr6:26409893:26409914:+	0	+
#Deleted in new
chr6	26409893	26410032	ENSG00000026950.16|BTN3A1|pc|chr6:26409893:26410032:+	0	+
#Deleted in new
chr6	26410005	26410032	ENSG00000026950.16|BTN3A1|pc|chr6:26410005:26410032:+	0	+
#Deleted in new
chr6	26411108	26411135	ENSG00000026950.16|BTN3A1|pc|chr6:26411108:26411135:+	0	+
#Deleted in new
chr6	26411554	26411581	ENSG00000026950.16|BTN3A1|pc|chr6:26411554:26411581:+	0	+
#Deleted in new
chr6	26411554	26413002	ENSG00000026950.16|BTN3A1|pc|chr6:26411554:26413002:+	0	+
#Deleted in new
chr6	26412411	26412920	ENSG00000026950.16|BTN3A1|pc|chr6:26412411:26412920:+	0	+
#Partially deleted in new
chr6	26412704	26413217	ENSG00000026950.16|BTN3A1|pc|chr6:26412704:26413217:+	0	+
#Partially deleted in new
chr6	26413168	26415204	ENSG00000026950.16|BTN3A1|pc|chr6:26413168:26415204:+	0	+
#Partially deleted in new
chr6	26413168	26415216	ENSG00000026950.16|BTN3A1|pc|chr6:26413168:26415216:+	0	+
#Deleted in new
chr6	26440471	26440648	ENSG00000111801.15|BTN3A3|pc|chr6:26440471:26440648:+	0	+
#Deleted in new
chr6	26440475	26440648	ENSG00000111801.15|BTN3A3|pc|chr6:26440475:26440648:+	0	+
#Deleted in new
chr6	26440487	26440648	ENSG00000111801.15|BTN3A3|pc|chr6:26440487:26440648:+	0	+
#Deleted in new
chr6	26440492	26440648	ENSG00000111801.15|BTN3A3|pc|chr6:26440492:26440648:+	0	+
#Deleted in new
chr6	26440496	26440719	ENSG00000111801.15|BTN3A3|pc|chr6:26440496:26440719:+	0	+
#Deleted in new
chr6	26440507	26440648	ENSG00000111801.15|BTN3A3|pc|chr6:26440507:26440648:+	0	+
#Deleted in new
chr6	26440509	26440648	ENSG00000111801.15|BTN3A3|pc|chr6:26440509:26440648:+	0	+
#Deleted in new
chr6	26440555	26440648	ENSG00000111801.15|BTN3A3|pc|chr6:26440555:26440648:+	0	+
#Deleted in new
chr6	26440557	26440648	ENSG00000111801.15|BTN3A3|pc|chr6:26440557:26440648:+	0	+
#Deleted in new
chr6	26443366	26443442	ENSG00000111801.15|BTN3A3|pc|chr6:26443366:26443442:+	0	+
#Deleted in new
chr6	26443381	26443442	ENSG00000111801.15|BTN3A3|pc|chr6:26443381:26443442:+	0	+
#Deleted in new
chr6	26443381	26443804	ENSG00000111801.15|BTN3A3|pc|chr6:26443381:26443804:+	0	+
#Deleted in new
chr6	26443569	26443659	ENSG00000111801.15|BTN3A3|pc|chr6:26443569:26443659:+	0	+
#Partially deleted in new
chr6	26443569	26443939	ENSG00000111801.15|BTN3A3|pc|chr6:26443569:26443939:+	0	+
#Deleted in new
chr6	26443640	26443659	ENSG00000111801.15|BTN3A3|pc|chr6:26443640:26443659:+	0	+
#Deleted in new
chr6	26448247	26448409	ENSG00000111801.15|BTN3A3|pc|chr6:26448247:26448409:+	0	+
#Deleted in new
chr6	26448247	26448448	ENSG00000111801.15|BTN3A3|pc|chr6:26448247:26448448:+	0	+
#Deleted in new
chr6	26448247	26448754	ENSG00000111801.15|BTN3A3|pc|chr6:26448247:26448754:+	0	+
#Deleted in new
chr6	26448616	26448637	ENSG00000111801.15|BTN3A3|pc|chr6:26448616:26448637:+	0	+
#Deleted in new
chr6	26448727	26448754	ENSG00000111801.15|BTN3A3|pc|chr6:26448727:26448754:+	0	+
#Deleted in new
chr6	26449236	26449688	ENSG00000111801.15|BTN3A3|pc|chr6:26449236:26449688:+	0	+
#Deleted in new
chr6	26449414	26449688	ENSG00000111801.15|BTN3A3|pc|chr6:26449414:26449688:+	0	+
#Deleted in new
chr6	26449661	26449688	ENSG00000111801.15|BTN3A3|pc|chr6:26449661:26449688:+	0	+
#Deleted in new
chr6	26450106	26450133	ENSG00000111801.15|BTN3A3|pc|chr6:26450106:26450133:+	0	+
#Deleted in new
chr6	26450106	26450214	ENSG00000111801.15|BTN3A3|pc|chr6:26450106:26450214:+	0	+
#Deleted in new
chr6	26538404	26538501	ENSG00000182952.4|HMGN4|pc|chr6:26538404:26538501:+	0	+
#Deleted in new
chr6	26538437	26538501	ENSG00000182952.4|HMGN4|pc|chr6:26538437:26538501:+	0	+
#Deleted in new
chr6	26539900	26539949	ENSG00000182952.4|HMGN4|pc|chr6:26539900:26539949:+	0	+
#Partially deleted in new
chr6	26572027	26574698	ENSG00000284607.1|AL121936.1|lncRNA|chr6:26572027:26574698:+	0	+
#Deleted in new
chr6	26602732	26603591	ENSG00000275846.1|AL513548.3|lncRNA|chr6:26602732:26603591:+	0	+
#Deleted in new
chr6	26603463	26606661	ENSG00000275846.1|AL513548.3|lncRNA|chr6:26603463:26606661:+	0	+
#Deleted in new
chr6	26604655	26606661	ENSG00000275846.1|AL513548.3|lncRNA|chr6:26604655:26606661:+	0	+
#Deleted in new
chr6	26650405	26650444	ENSG00000181315.10|ZNF322|pc|chr6:26650405:26650444:-	0	-
#Deleted in new
chr6	26651368	26651496	ENSG00000181315.10|ZNF322|pc|chr6:26651368:26651496:-	0	-
#Deleted in new
chr6	26686240	26687964	ENSG00000261584.1|AL513548.1|lncRNA|chr6:26686240:26687964:+	0	+
#Deleted in new
chr6	26956991	26957183	ENSG00000224843.6|LINC00240|lncRNA|chr6:26956991:26957183:+	0	+
#Deleted in new
chr6	26956992	26957183	ENSG00000224843.6|LINC00240|lncRNA|chr6:26956992:26957183:+	0	+
#Deleted in new
chr6	26968457	26968522	ENSG00000224843.6|LINC00240|lncRNA|chr6:26968457:26968522:+	0	+
#Partially deleted in new
chr6	26969017	26974367	ENSG00000224843.6|LINC00240|lncRNA|chr6:26969017:26974367:+	0	+
#Deleted in new
chr6	27020452	27020655	ENSG00000224843.6|LINC00240|lncRNA|chr6:27020452:27020655:+	0	+
#Deleted in new
chr6	27020635	27020655	ENSG00000224843.6|LINC00240|lncRNA|chr6:27020635:27020655:+	0	+
#Deleted in new
chr6	27023253	27023397	ENSG00000224843.6|LINC00240|lncRNA|chr6:27023253:27023397:+	0	+
#Deleted in new
chr6	27023253	27023924	ENSG00000224843.6|LINC00240|lncRNA|chr6:27023253:27023924:+	0	+
#Deleted in new
chr6	27023749	27023924	ENSG00000224843.6|LINC00240|lncRNA|chr6:27023749:27023924:+	0	+
#Deleted in new
chr6	27023764	27023924	ENSG00000224843.6|LINC00240|lncRNA|chr6:27023764:27023924:+	0	+
#Deleted in new
chr6	27122656	27123221	ENSG00000272468.1|AL021807.1|lncRNA|chr6:27122656:27123221:-	0	-
#Split in new
chr6	27133041	27135291	ENSG00000196787.3|HIST1H2AG|pc|chr6:27133041:27135291:+	0	+
#Duplicated in new
chr6	27255246	27256453	ENSG00000112812.15|PRSS16|pc|chr6:27255246:27256453:+	0	+
#Duplicated in new
chr6	27255246	27256456	ENSG00000112812.15|PRSS16|pc|chr6:27255246:27256456:+	0	+
#Duplicated in new
chr6	27255246	27256471	ENSG00000112812.15|PRSS16|pc|chr6:27255246:27256471:+	0	+
#Duplicated in new
chr6	27255246	27256624	ENSG00000112812.15|PRSS16|pc|chr6:27255246:27256624:+	0	+
#Deleted in new
chr6	27285902	27286148	ENSG00000158553.4|POM121L2|pc|chr6:27285902:27286148:-	0	-
#Deleted in new
chr6	27374614	27375137	ENSG00000124613.8|ZNF391|pc|chr6:27374614:27375137:+	0	+
#Deleted in new
chr6	27388717	27389075	ENSG00000124613.8|ZNF391|pc|chr6:27388717:27389075:+	0	+
#Deleted in new
chr6	27388903	27389075	ENSG00000124613.8|ZNF391|pc|chr6:27388903:27389075:+	0	+
#Deleted in new
chr6	27388991	27389075	ENSG00000124613.8|ZNF391|pc|chr6:27388991:27389075:+	0	+
#Deleted in new
chr6	27390979	27391132	ENSG00000124613.8|ZNF391|pc|chr6:27390979:27391132:+	0	+
#Deleted in new
chr6	27395016	27395095	ENSG00000124613.8|ZNF391|pc|chr6:27395016:27395095:+	0	+
#Deleted in new
chr6	27399441	27399548	ENSG00000124613.8|ZNF391|pc|chr6:27399441:27399548:+	0	+
#Deleted in new
chr6	27399441	27399550	ENSG00000124613.8|ZNF391|pc|chr6:27399441:27399550:+	0	+
#Deleted in new
chr6	27404009	27406964	ENSG00000271755.1|AL031118.1|lncRNA|chr6:27404009:27406964:-	0	-
#Deleted in new
chr6	27694034	27694506	ENSG00000281706.2|LINC01012|lncRNA|chr6:27694034:27694506:+	0	+
#Deleted in new
chr6	27694044	27694506	ENSG00000281706.2|LINC01012|lncRNA|chr6:27694044:27694506:+	0	+
#Deleted in new
chr6	27694072	27694506	ENSG00000281706.2|LINC01012|lncRNA|chr6:27694072:27694506:+	0	+
#Deleted in new
chr6	27694078	27694226	ENSG00000281706.2|LINC01012|lncRNA|chr6:27694078:27694226:+	0	+
#Deleted in new
chr6	27702313	27702417	ENSG00000281706.2|LINC01012|lncRNA|chr6:27702313:27702417:+	0	+
#Deleted in new
chr6	27702313	27702713	ENSG00000281706.2|LINC01012|lncRNA|chr6:27702313:27702713:+	0	+
#Deleted in new
chr6	27706638	27709157	ENSG00000281706.2|LINC01012|lncRNA|chr6:27706638:27709157:+	0	+
#Deleted in new
chr6	27707338	27707416	ENSG00000281706.2|LINC01012|lncRNA|chr6:27707338:27707416:+	0	+
#Deleted in new
chr6	27710123	27710222	ENSG00000281706.2|LINC01012|lncRNA|chr6:27710123:27710222:+	0	+
#Deleted in new
chr6	27852108	27852204	ENSG00000233822.4|HIST1H2BN|pc|chr6:27852108:27852204:+	0	+
#Split in new
chr6	27852108	27855709	ENSG00000233822.4|HIST1H2BN|pc|chr6:27852108:27855709:+	0	+
#Deleted in new
chr6	28078791	28078972	ENSG00000272009.1|AL121944.1|lncRNA|chr6:28078791:28078972:-	0	-
#Deleted in new
chr6	28080625	28081130	ENSG00000272009.1|AL121944.1|lncRNA|chr6:28080625:28081130:-	0	-
#Deleted in new
chr6	28080974	28081530	ENSG00000197279.3|ZNF165|pc|chr6:28080974:28081530:+	0	+
#Deleted in new
chr6	28121794	28123211	ENSG00000269293.2|ZSCAN16-AS1|lncRNA|chr6:28121794:28123211:-	0	-
#Deleted in new
chr6	28121797	28123211	ENSG00000269293.2|ZSCAN16-AS1|lncRNA|chr6:28121797:28123211:-	0	-
#Deleted in new
chr6	28124559	28124677	ENSG00000196812.4|ZSCAN16|pc|chr6:28124559:28124677:+	0	+
#Deleted in new
chr6	28136744	28136866	ENSG00000269293.2|ZSCAN16-AS1|lncRNA|chr6:28136744:28136866:-	0	-
#Deleted in new
chr6	28136744	28137293	ENSG00000269293.2|ZSCAN16-AS1|lncRNA|chr6:28136744:28137293:-	0	-
#Deleted in new
chr6	28136848	28139678	ENSG00000261839.1|AL358933.1|lncRNA|chr6:28136848:28139678:+	0	+
#Deleted in new
chr6	28144330	28144424	ENSG00000198315.10|ZKSCAN8|pc|chr6:28144330:28144424:+	0	+
#Deleted in new
chr6	28170844	28172521	ENSG00000280107.1|AL022393.1|lncRNA|chr6:28170844:28172521:+	0	+
#Deleted in new
chr6	28224885	28225268	ENSG00000137185.11|ZSCAN9|pc|chr6:28224885:28225268:+	0	+
#Deleted in new
chr6	28225263	28225330	ENSG00000137185.11|ZSCAN9|pc|chr6:28225263:28225330:+	0	+
#Deleted in new
chr6	28225274	28225366	ENSG00000137185.11|ZSCAN9|pc|chr6:28225274:28225366:+	0	+
#Deleted in new
chr6	28225291	28225330	ENSG00000137185.11|ZSCAN9|pc|chr6:28225291:28225330:+	0	+
#Deleted in new
chr6	28225291	28225366	ENSG00000137185.11|ZSCAN9|pc|chr6:28225291:28225366:+	0	+
#Deleted in new
chr6	28225338	28225366	ENSG00000137185.11|ZSCAN9|pc|chr6:28225338:28225366:+	0	+
#Duplicated in new
chr6	28227011	28227207	ENSG00000137185.11|ZSCAN9|pc|chr6:28227011:28227207:+	0	+
#Deleted in new
chr6	28227664	28227958	ENSG00000137185.11|ZSCAN9|pc|chr6:28227664:28227958:+	0	+
#Deleted in new
chr6	28227689	28227837	ENSG00000137185.11|ZSCAN9|pc|chr6:28227689:28227837:+	0	+
#Deleted in new
chr6	28227689	28229230	ENSG00000137185.11|ZSCAN9|pc|chr6:28227689:28229230:+	0	+
#Deleted in new
chr6	28230335	28230488	ENSG00000137185.11|ZSCAN9|pc|chr6:28230335:28230488:+	0	+
#Deleted in new
chr6	28230401	28230488	ENSG00000137185.11|ZSCAN9|pc|chr6:28230401:28230488:+	0	+
#Deleted in new
chr6	28232561	28232586	ENSG00000137185.11|ZSCAN9|pc|chr6:28232561:28232586:+	0	+
#Deleted in new
chr6	28267009	28267213	ENSG00000197062.11|ZSCAN26|pc|chr6:28267009:28267213:+	0	+
#Deleted in new
chr6	28267057	28267213	ENSG00000197062.11|ZSCAN26|pc|chr6:28267057:28267213:+	0	+
#Deleted in new
chr6	28267120	28267213	ENSG00000276302.1|AL021997.3|pc|chr6:28267120:28267213:+	0	+
#Deleted in new
chr6	28267142	28267213	ENSG00000197062.11|ZSCAN26|pc|chr6:28267142:28267213:+	0	+
#Deleted in new
chr6	28267148	28267213	ENSG00000197062.11|ZSCAN26|pc|chr6:28267148:28267213:+	0	+
#Deleted in new
chr6	28267152	28267213	ENSG00000197062.11|ZSCAN26|pc|chr6:28267152:28267213:+	0	+
#Deleted in new
chr6	28267358	28267453	ENSG00000197062.11|ZSCAN26|pc|chr6:28267358:28267453:+	0	+
#Duplicated in new
chr6	28283755	28284209	ENSG00000137338.5|PGBD1|pc|chr6:28283755:28284209:+	0	+
#Deleted in new
chr6	28296815	28296945	ENSG00000137338.5|PGBD1|pc|chr6:28296815:28296945:+	0	+
#Deleted in new
chr6	28297894	28297991	ENSG00000137338.5|PGBD1|pc|chr6:28297894:28297991:+	0	+
#Deleted in new
chr6	28324692	28324806	ENSG00000235109.7|ZSCAN31|pc|chr6:28324692:28324806:-	0	-
#Deleted in new
chr6	28332284	28332393	ENSG00000235109.7|ZSCAN31|pc|chr6:28332284:28332393:-	0	-
#Deleted in new
chr6	28335366	28335451	ENSG00000235109.7|ZSCAN31|pc|chr6:28335366:28335451:-	0	-
#Deleted in new
chr6	28335829	28335936	ENSG00000235109.7|ZSCAN31|pc|chr6:28335829:28335936:-	0	-
#Partially deleted in new
chr6	28336081	28336375	ENSG00000235109.7|ZSCAN31|pc|chr6:28336081:28336375:-	0	-
#Deleted in new
chr6	28336789	28336943	ENSG00000235109.7|ZSCAN31|pc|chr6:28336789:28336943:-	0	-
#Deleted in new
chr6	28336899	28336943	ENSG00000235109.7|ZSCAN31|pc|chr6:28336899:28336943:-	0	-
#Deleted in new
chr6	28337755	28337893	ENSG00000235109.7|ZSCAN31|pc|chr6:28337755:28337893:-	0	-
#Deleted in new
chr6	28337798	28337893	ENSG00000235109.7|ZSCAN31|pc|chr6:28337798:28337893:-	0	-
#Deleted in new
chr6	28341745	28341751	ENSG00000235109.7|ZSCAN31|pc|chr6:28341745:28341751:-	0	-
#Deleted in new
chr6	28341745	28341792	ENSG00000235109.7|ZSCAN31|pc|chr6:28341745:28341792:-	0	-
#Deleted in new
chr6	28341745	28341795	ENSG00000235109.7|ZSCAN31|pc|chr6:28341745:28341795:-	0	-
#Deleted in new
chr6	28353861	28353952	ENSG00000235109.7|ZSCAN31|pc|chr6:28353861:28353952:-	0	-
#Deleted in new
chr6	28353861	28354065	ENSG00000235109.7|ZSCAN31|pc|chr6:28353861:28354065:-	0	-
#Deleted in new
chr6	28353861	28354204	ENSG00000235109.7|ZSCAN31|pc|chr6:28353861:28354204:-	0	-
#Deleted in new
chr6	28354130	28354186	ENSG00000235109.7|ZSCAN31|pc|chr6:28354130:28354186:-	0	-
#Deleted in new
chr6	28354130	28354195	ENSG00000235109.7|ZSCAN31|pc|chr6:28354130:28354195:-	0	-
#Deleted in new
chr6	28354130	28354204	ENSG00000235109.7|ZSCAN31|pc|chr6:28354130:28354204:-	0	-
#Deleted in new
chr6	28355322	28355674	ENSG00000235109.7|ZSCAN31|pc|chr6:28355322:28355674:-	0	-
#Deleted in new
chr6	28356045	28356271	ENSG00000235109.7|ZSCAN31|pc|chr6:28356045:28356271:-	0	-
#Split in new
chr6	28378954	28382609	ENSG00000158691.14|ZSCAN12|pc|chr6:28378954:28382609:-	0	-
#Split in new
chr6	28379218	28380871	ENSG00000158691.14|ZSCAN12|pc|chr6:28379218:28380871:-	0	-
#Deleted in new
chr6	28382190	28382609	ENSG00000158691.14|ZSCAN12|pc|chr6:28382190:28382609:-	0	-
#Deleted in new
chr6	28431929	28432051	ENSG00000187987.9|ZSCAN23|pc|chr6:28431929:28432051:-	0	-
#Split in new
chr6	28432654	28435078	ENSG00000187987.9|ZSCAN23|pc|chr6:28432654:28435078:-	0	-
#Duplicated in new
chr6	28434451	28435078	ENSG00000187987.9|ZSCAN23|pc|chr6:28434451:28435078:-	0	-
#Deleted in new
chr6	28443398	28443467	ENSG00000187987.9|ZSCAN23|pc|chr6:28443398:28443467:-	0	-
#Deleted in new
chr6	28443398	28443480	ENSG00000187987.9|ZSCAN23|pc|chr6:28443398:28443480:-	0	-
#Deleted in new
chr6	28443398	28443502	ENSG00000187987.9|ZSCAN23|pc|chr6:28443398:28443502:-	0	-
#Deleted in new
chr6	28527026	28527088	ENSG00000198704.9|GPX6|pc|chr6:28527026:28527088:-	0	-
#Deleted in new
chr6	28528127	28528215	ENSG00000198704.9|GPX6|pc|chr6:28528127:28528215:-	0	-
#Deleted in new
chr6	28528325	28528608	ENSG00000224586.6|GPX5|pc|chr6:28528325:28528608:+	0	+
#Deleted in new
chr6	28528330	28528608	ENSG00000224586.6|GPX5|pc|chr6:28528330:28528608:+	0	+
#Deleted in new
chr6	28571629	28573827	ENSG00000232040.2|ZBED9|pc|chr6:28571629:28573827:-	0	-
#Deleted in new
chr6	28574643	28576136	ENSG00000232040.2|ZBED9|pc|chr6:28574643:28576136:-	0	-
#Deleted in new
chr6	28576016	28576136	ENSG00000232040.2|ZBED9|pc|chr6:28576016:28576136:-	0	-
#Deleted in new
chr6	2857910	2857995	ENSG00000230438.6|SERPINB9P1|lncRNA|chr6:2857910:2857995:-	0	-
#Deleted in new
chr6	28585205	28585321	ENSG00000232040.2|ZBED9|pc|chr6:28585205:28585321:-	0	-
#Deleted in new
chr6	28587377	28587732	ENSG00000246350.1|AL049543.1|lncRNA|chr6:28587377:28587732:+	0	+
#Deleted in new
chr6	28587461	28587596	ENSG00000232040.2|ZBED9|pc|chr6:28587461:28587596:-	0	-
#Deleted in new
chr6	28589359	28589703	ENSG00000232040.2|ZBED9|pc|chr6:28589359:28589703:-	0	-
#Deleted in new
chr6	28648285	28648651	ENSG00000235570.1|LINC00533|lncRNA|chr6:28648285:28648651:-	0	-
#Deleted in new
chr6	28648895	28649066	ENSG00000235570.1|LINC00533|lncRNA|chr6:28648895:28649066:-	0	-
#Deleted in new
chr6	2876292	2876425	ENSG00000230438.6|SERPINB9P1|lncRNA|chr6:2876292:2876425:-	0	-
#Deleted in new
chr6	2876292	2876510	ENSG00000230438.6|SERPINB9P1|lncRNA|chr6:2876292:2876510:-	0	-
#Deleted in new
chr6	2881284	2881407	ENSG00000230438.6|SERPINB9P1|lncRNA|chr6:2881284:2881407:-	0	-
#Deleted in new
chr6	28837868	28838320	ENSG00000225173.1|AL662890.2|lncRNA|chr6:28837868:28838320:-	0	-
#Deleted in new
chr6	28838749	28839006	ENSG00000225173.1|AL662890.2|lncRNA|chr6:28838749:28839006:-	0	-
#Partially deleted in new
chr6	28859624	28862015	ENSG00000225595.2|LINC01623|lncRNA|chr6:28859624:28862015:-	0	-
#Deleted in new
chr6	28863283	28863350	ENSG00000225595.2|LINC01623|lncRNA|chr6:28863283:28863350:-	0	-
#Deleted in new
chr6	28863283	28863677	ENSG00000225595.2|LINC01623|lncRNA|chr6:28863283:28863677:-	0	-
#Deleted in new
chr6	28863289	28863536	ENSG00000225595.2|LINC01623|lncRNA|chr6:28863289:28863536:-	0	-
#Deleted in new
chr6	28864317	28864630	ENSG00000225595.2|LINC01623|lncRNA|chr6:28864317:28864630:-	0	-
#Split in new
chr6	2887265	2890570	ENSG00000170542.5|SERPINB9|pc|chr6:2887265:2890570:-	0	-
#Deleted in new
chr6	28896529	28896730	ENSG00000224157.1|HCG14|lncRNA|chr6:28896529:28896730:+	0	+
#Deleted in new
chr6	28914775	28915290	ENSG00000204713.10|TRIM27|pc|chr6:28914775:28915290:-	0	-
#Deleted in new
chr6	28943876	28944026	ENSG00000204709.4|LINC01556|lncRNA|chr6:28943876:28944026:+	0	+
#Deleted in new
chr6	28944221	28944537	ENSG00000204709.4|LINC01556|lncRNA|chr6:28944221:28944537:+	0	+
#Deleted in new
chr6	28986202	28986232	ENSG00000227214.2|HCG15|lncRNA|chr6:28986202:28986232:+	0	+
#Deleted in new
chr6	28986312	28986506	ENSG00000227214.2|HCG15|lncRNA|chr6:28986312:28986506:+	0	+
#Deleted in new
chr6	29003512	29003594	ENSG00000197935.6|ZNF311|pc|chr6:29003512:29003594:-	0	-
#Deleted in new
chr6	29003897	29004065	ENSG00000197935.6|ZNF311|pc|chr6:29003897:29004065:-	0	-
#Deleted in new
chr6	29003945	29004214	ENSG00000197935.6|ZNF311|pc|chr6:29003945:29004214:-	0	-
#Deleted in new
chr6	29005007	29005260	ENSG00000197935.6|ZNF311|pc|chr6:29005007:29005260:-	0	-
#Deleted in new
chr6	29005007	29005316	ENSG00000197935.6|ZNF311|pc|chr6:29005007:29005316:-	0	-
#Deleted in new
chr6	2903200	2903280	ENSG00000170542.5|SERPINB9|pc|chr6:2903200:2903280:-	0	-
#Deleted in new
chr6	29036020	29036050	ENSG00000277661.4|AL662791.5|lncRNA|chr6:29036020:29036050:+	0	+
#Deleted in new
chr6	29036222	29036345	ENSG00000277661.4|AL662791.5|lncRNA|chr6:29036222:29036345:+	0	+
#Deleted in new
chr6	29040213	29040348	ENSG00000277661.4|AL662791.5|lncRNA|chr6:29040213:29040348:+	0	+
#Deleted in new
chr6	29063929	29064025	ENSG00000277661.4|AL662791.5|lncRNA|chr6:29063929:29064025:+	0	+
#Deleted in new
chr6	29063929	29064129	ENSG00000277661.4|AL662791.5|lncRNA|chr6:29063929:29064129:+	0	+
#Deleted in new
chr6	29063996	29064129	ENSG00000277661.4|AL662791.5|lncRNA|chr6:29063996:29064129:+	0	+
#Deleted in new
chr6	29065120	29065172	ENSG00000277661.4|AL662791.5|lncRNA|chr6:29065120:29065172:+	0	+
#Deleted in new
chr6	29108058	29108295	ENSG00000204701.2|OR2J3|pc|chr6:29108058:29108295:+	0	+
#Deleted in new
chr6	29108215	29108295	ENSG00000204701.2|OR2J3|pc|chr6:29108215:29108295:+	0	+
#Deleted in new
chr6	29108536	29108654	ENSG00000204701.2|OR2J3|pc|chr6:29108536:29108654:+	0	+
#Deleted in new
chr6	29109455	29109657	ENSG00000204701.2|OR2J3|pc|chr6:29109455:29109657:+	0	+
#Deleted in new
chr6	29124209	29124346	ENSG00000227206.1|AL645937.4|lncRNA|chr6:29124209:29124346:+	0	+
#Deleted in new
chr6	29128656	29128908	ENSG00000227206.1|AL645937.4|lncRNA|chr6:29128656:29128908:+	0	+
#Deleted in new
chr6	291629	291700	ENSG00000112679.14|DUSP22|pc|chr6:291629:291700:+	0	+
#Deleted in new
chr6	2916893	2917005	ENSG00000228365.1|AL133351.2|lncRNA|chr6:2916893:2917005:+	0	+
#Deleted in new
chr6	29170906	29171105	ENSG00000204700.5|OR2J2|pc|chr6:29170906:29171105:+	0	+
#Deleted in new
chr6	2917361	2917733	ENSG00000228365.1|AL133351.2|lncRNA|chr6:2917361:2917733:+	0	+
#Deleted in new
chr6	29368631	29368865	ENSG00000243729.4|OR5V1|pc|chr6:29368631:29368865:-	0	-
#Deleted in new
chr6	29422606	29422682	ENSG00000243729.4|OR5V1|pc|chr6:29422606:29422682:-	0	-
#Deleted in new
chr6	29423024	29423062	ENSG00000243729.4|OR5V1|pc|chr6:29423024:29423062:-	0	-
#Deleted in new
chr6	29428213	29428466	ENSG00000204694.11|OR11A1|pc|chr6:29428213:29428466:-	0	-
#Deleted in new
chr6	29428912	29428960	ENSG00000204694.11|OR11A1|pc|chr6:29428912:29428960:-	0	-
#Deleted in new
chr6	29430300	29430425	ENSG00000204694.11|OR11A1|pc|chr6:29430300:29430425:-	0	-
#Deleted in new
chr6	29456986	29457071	ENSG00000204694.11|OR11A1|pc|chr6:29456986:29457071:-	0	-
#Deleted in new
chr6	29457180	29457207	ENSG00000204688.9|OR2H1|pc|chr6:29457180:29457207:+	0	+
#Deleted in new
chr6	29457187	29457207	ENSG00000204688.9|OR2H1|pc|chr6:29457187:29457207:+	0	+
#Deleted in new
chr6	29457202	29457207	ENSG00000204688.9|OR2H1|pc|chr6:29457202:29457207:+	0	+
#Deleted in new
chr6	29459770	29460184	ENSG00000204688.9|OR2H1|pc|chr6:29459770:29460184:+	0	+
#Deleted in new
chr6	29460020	29460184	ENSG00000204688.9|OR2H1|pc|chr6:29460020:29460184:+	0	+
#Deleted in new
chr6	29460403	29460454	ENSG00000204688.9|OR2H1|pc|chr6:29460403:29460454:+	0	+
#Deleted in new
chr6	29460875	29461086	ENSG00000204688.9|OR2H1|pc|chr6:29460875:29461086:+	0	+
#Deleted in new
chr6	29463748	29464328	ENSG00000204688.9|OR2H1|pc|chr6:29463748:29464328:+	0	+
#Deleted in new
chr6	29497508	29497539	ENSG00000229274.1|AL662860.1|lncRNA|chr6:29497508:29497539:+	0	+
#Deleted in new
chr6	29510267	29510556	ENSG00000229274.1|AL662860.1|lncRNA|chr6:29510267:29510556:+	0	+
#Deleted in new
chr6	29529419	29529584	ENSG00000224582.5|LINC01015|lncRNA|chr6:29529419:29529584:+	0	+
#Deleted in new
chr6	29529475	29529584	ENSG00000224582.5|LINC01015|lncRNA|chr6:29529475:29529584:+	0	+
#Deleted in new
chr6	29532079	29532157	ENSG00000224582.5|LINC01015|lncRNA|chr6:29532079:29532157:+	0	+
#Split in new
chr6	2959167	2961327	ENSG00000124570.17|SERPINB6|pc|chr6:2959167:2961327:-	0	-
#Deleted in new
chr6	2961893	2962108	ENSG00000124570.17|SERPINB6|pc|chr6:2961893:2962108:-	0	-
#Deleted in new
chr6	29663969	29663995	ENSG00000204655.11|MOG|pc|chr6:29663969:29663995:+	0	+
#Deleted in new
chr6	29664629	29664767	ENSG00000204655.11|MOG|pc|chr6:29664629:29664767:+	0	+
#Deleted in new
chr6	29664649	29664735	ENSG00000204655.11|MOG|pc|chr6:29664649:29664735:+	0	+
#Partially deleted in new
chr6	29675385	29675487	ENSG00000204644.9|ZFP57|pc|chr6:29675385:29675487:-	0	-
#Partially deleted in new
chr6	29675420	29675487	ENSG00000204644.9|ZFP57|pc|chr6:29675420:29675487:-	0	-
#Deleted in new
chr6	29681061	29681110	ENSG00000204644.9|ZFP57|pc|chr6:29681061:29681110:-	0	-
#Deleted in new
chr6	2968778	2968913	ENSG00000124570.17|SERPINB6|pc|chr6:2968778:2968913:-	0	-
#Deleted in new
chr6	2970757	2971048	ENSG00000124570.17|SERPINB6|pc|chr6:2970757:2971048:-	0	-
#Deleted in new
chr6	2971116	2971206	ENSG00000124570.17|SERPINB6|pc|chr6:2971116:2971206:-	0	-
#Deleted in new
chr6	2971247	2971305	ENSG00000124570.17|SERPINB6|pc|chr6:2971247:2971305:-	0	-
#Deleted in new
chr6	2971490	2971585	ENSG00000124570.17|SERPINB6|pc|chr6:2971490:2971585:-	0	-
#Deleted in new
chr6	2971532	2971856	ENSG00000124570.17|SERPINB6|pc|chr6:2971532:2971856:-	0	-
#Deleted in new
chr6	2971532	2972165	ENSG00000124570.17|SERPINB6|pc|chr6:2971532:2972165:-	0	-
#Partially deleted in new
chr6	29722774	29723000	ENSG00000204642.13|HLA-F|pc|chr6:29722774:29723000:+	0	+
#Split in new
chr6	29726402	29726525	ENSG00000204642.13|HLA-F|pc|chr6:29726402:29726525:+	0	+
#Split in new
chr6	29726402	29726526	ENSG00000204642.13|HLA-F|pc|chr6:29726402:29726526:+	0	+
#Deleted in new
chr6	29727956	29729351	ENSG00000204642.13|HLA-F|pc|chr6:29727956:29729351:+	0	+
#Deleted in new
chr6	29728364	29728495	ENSG00000214922.9|HLA-F-AS1|lncRNA|chr6:29728364:29728495:-	0	-
#Deleted in new
chr6	29735027	29736820	ENSG00000214922.9|HLA-F-AS1|lncRNA|chr6:29735027:29736820:-	0	-
#Deleted in new
chr6	29737758	29738201	ENSG00000214922.9|HLA-F-AS1|lncRNA|chr6:29737758:29738201:-	0	-
#Deleted in new
chr6	29737965	29738201	ENSG00000214922.9|HLA-F-AS1|lncRNA|chr6:29737965:29738201:-	0	-
#Deleted in new
chr6	29737965	29738436	ENSG00000214922.9|HLA-F-AS1|lncRNA|chr6:29737965:29738436:-	0	-
#Deleted in new
chr6	29738121	29738188	ENSG00000204642.13|HLA-F|pc|chr6:29738121:29738188:+	0	+
#Deleted in new
chr6	29738334	29738444	ENSG00000214922.9|HLA-F-AS1|lncRNA|chr6:29738334:29738444:-	0	-
#Deleted in new
chr6	29738334	29738455	ENSG00000214922.9|HLA-F-AS1|lncRNA|chr6:29738334:29738455:-	0	-
#Deleted in new
chr6	29738375	29738528	ENSG00000204642.13|HLA-F|pc|chr6:29738375:29738528:+	0	+
#Deleted in new
chr6	29738550	29738886	ENSG00000214922.9|HLA-F-AS1|lncRNA|chr6:29738550:29738886:-	0	-
#Deleted in new
chr6	29747147	29747425	ENSG00000214922.9|HLA-F-AS1|lncRNA|chr6:29747147:29747425:-	0	-
#Deleted in new
chr6	29748899	29748993	ENSG00000214922.9|HLA-F-AS1|lncRNA|chr6:29748899:29748993:-	0	-
#Deleted in new
chr6	29748899	29749049	ENSG00000214922.9|HLA-F-AS1|lncRNA|chr6:29748899:29749049:-	0	-
#Deleted in new
chr6	29751964	29752207	ENSG00000272236.1|AL645939.5|lncRNA|chr6:29751964:29752207:-	0	-
#Deleted in new
chr6	29871894	29873783	ENSG00000281831.1|HCP5B|lncRNA|chr6:29871894:29873783:-	0	-
#Deleted in new
chr6	2987966	2988031	ENSG00000244041.7|LINC01011|lncRNA|chr6:2987966:2988031:+	0	+
#Deleted in new
chr6	2987986	2988031	ENSG00000124588.19|NQO2|pc|chr6:2987986:2988031:+	0	+
#Partially deleted in new
chr6	2988427	2991173	ENSG00000244041.7|LINC01011|lncRNA|chr6:2988427:2991173:+	0	+
#Deleted in new
chr6	2989527	2989710	ENSG00000124588.19|NQO2|pc|chr6:2989527:2989710:+	0	+
#Deleted in new
chr6	2989527	2989733	ENSG00000244041.7|LINC01011|lncRNA|chr6:2989527:2989733:+	0	+
#Deleted in new
chr6	2989527	2990252	ENSG00000244041.7|LINC01011|lncRNA|chr6:2989527:2990252:+	0	+
#Deleted in new
chr6	2989527	2990348	ENSG00000244041.7|LINC01011|lncRNA|chr6:2989527:2990348:+	0	+
#Deleted in new
chr6	2989721	2990011	ENSG00000224846.2|AL133351.1|lncRNA|chr6:2989721:2990011:-	0	-
#Deleted in new
chr6	2989725	2990011	ENSG00000224846.2|AL133351.1|lncRNA|chr6:2989725:2990011:-	0	-
#Deleted in new
chr6	2989868	2991173	ENSG00000244041.7|LINC01011|lncRNA|chr6:2989868:2991173:+	0	+
#Deleted in new
chr6	2993930	2994053	ENSG00000124588.19|NQO2|pc|chr6:2993930:2994053:+	0	+
#Deleted in new
chr6	29941259	29941319	ENSG00000206503.12|HLA-A|pc|chr6:29941259:29941319:+	0	+
#Duplicated in new
chr6	29942244	29942626	ENSG00000206503.12|HLA-A|pc|chr6:29942244:29942626:+	0	+
#Duplicated in new
chr6	29945058	29945091	ENSG00000206503.12|HLA-A|pc|chr6:29945058:29945091:+	0	+
#Deleted in new
chr6	29975111	29975517	ENSG00000204625.10|HCG9|lncRNA|chr6:29975111:29975517:+	0	+
#Deleted in new
chr6	29977466	29977503	ENSG00000204625.10|HCG9|lncRNA|chr6:29977466:29977503:+	0	+
#Deleted in new
chr6	29977653	29977717	ENSG00000204625.10|HCG9|lncRNA|chr6:29977653:29977717:+	0	+
#Deleted in new
chr6	29978217	29978410	ENSG00000204625.10|HCG9|lncRNA|chr6:29978217:29978410:+	0	+
#Deleted in new
chr6	2998616	2998743	ENSG00000224846.2|AL133351.1|lncRNA|chr6:2998616:2998743:-	0	-
#Deleted in new
chr6	2999012	2999134	ENSG00000224846.2|AL133351.1|lncRNA|chr6:2999012:2999134:-	0	-
#Deleted in new
chr6	2999875	3000085	ENSG00000124588.19|NQO2|pc|chr6:2999875:3000085:+	0	+
#Deleted in new
chr6	2999973	3000085	ENSG00000124588.19|NQO2|pc|chr6:2999973:3000085:+	0	+
#Deleted in new
chr6	2999988	3000085	ENSG00000124588.19|NQO2|pc|chr6:2999988:3000085:+	0	+
#Deleted in new
chr6	2999996	3000085	ENSG00000124588.19|NQO2|pc|chr6:2999996:3000085:+	0	+
#Deleted in new
chr6	3000001	3000085	ENSG00000124588.19|NQO2|pc|chr6:3000001:3000085:+	0	+
#Deleted in new
chr6	3000157	3000367	ENSG00000124588.19|NQO2|pc|chr6:3000157:3000367:+	0	+
#Deleted in new
chr6	3002049	3002286	ENSG00000124588.19|NQO2|pc|chr6:3002049:3002286:+	0	+
#Deleted in new
chr6	3003668	3003789	ENSG00000124588.19|NQO2|pc|chr6:3003668:3003789:+	0	+
#Deleted in new
chr6	3004166	3004259	ENSG00000124588.19|NQO2|pc|chr6:3004166:3004259:+	0	+
#Deleted in new
chr6	3004494	3004651	ENSG00000124588.19|NQO2|pc|chr6:3004494:3004651:+	0	+
#Deleted in new
chr6	30066708	30067009	ENSG00000204619.7|PPP1R11|pc|chr6:30066708:30067009:+	0	+
#Deleted in new
chr6	30102896	30103245	ENSG00000204616.10|TRIM31|pc|chr6:30102896:30103245:-	0	-
#Deleted in new
chr6	30102896	30103789	ENSG00000204616.10|TRIM31|pc|chr6:30102896:30103789:-	0	-
#Deleted in new
chr6	30103471	30103789	ENSG00000204616.10|TRIM31|pc|chr6:30103471:30103789:-	0	-
#Deleted in new
chr6	30107662	30107787	ENSG00000231226.1|TRIM31-AS1|lncRNA|chr6:30107662:30107787:+	0	+
#Partially deleted in new
chr6	30112079	30112186	ENSG00000204616.10|TRIM31|pc|chr6:30112079:30112186:-	0	-
#Deleted in new
chr6	30114570	30114724	ENSG00000231226.1|TRIM31-AS1|lncRNA|chr6:30114570:30114724:+	0	+
#Partially deleted in new
chr6	30151944	30153771	ENSG00000204613.10|TRIM10|pc|chr6:30151944:30153771:-	0	-
#Deleted in new
chr6	30169838	30169852	ENSG00000204610.12|TRIM15|pc|chr6:30169838:30169852:+	0	+
#Split in new
chr6	3019478	3028869	ENSG00000124588.19|NQO2|pc|chr6:3019478:3028869:+	0	+
#Deleted in new
chr6	30234038	30234268	ENSG00000270604.5|HCG17|lncRNA|chr6:30234038:30234268:-	0	-
#Deleted in new
chr6	30234357	30234450	ENSG00000270604.5|HCG17|lncRNA|chr6:30234357:30234450:-	0	-
#Deleted in new
chr6	30234357	30234477	ENSG00000270604.5|HCG17|lncRNA|chr6:30234357:30234477:-	0	-
#Deleted in new
chr6	30254346	30254464	ENSG00000270604.5|HCG17|lncRNA|chr6:30254346:30254464:-	0	-
#Deleted in new
chr6	30282348	30286054	ENSG00000280128.1|AL662795.2|lncRNA|chr6:30282348:30286054:-	0	-
#Partially deleted in new
chr6	30287396	30289372	ENSG00000231074.8|HCG18|lncRNA|chr6:30287396:30289372:-	0	-
#Split in new
chr6	30290793	30292599	ENSG00000231074.8|HCG18|lncRNA|chr6:30290793:30292599:-	0	-
#Split in new
chr6	30291005	30292599	ENSG00000231074.8|HCG18|lncRNA|chr6:30291005:30292599:-	0	-
#Split in new
chr6	30291005	30294964	ENSG00000231074.8|HCG18|lncRNA|chr6:30291005:30294964:-	0	-
#Partially deleted in new
chr6	30291374	30292599	ENSG00000231074.8|HCG18|lncRNA|chr6:30291374:30292599:-	0	-
#Deleted in new
chr6	30294406	30294964	ENSG00000231074.8|HCG18|lncRNA|chr6:30294406:30294964:-	0	-
#Deleted in new
chr6	30294470	30294964	ENSG00000231074.8|HCG18|lncRNA|chr6:30294470:30294964:-	0	-
#Deleted in new
chr6	30294676	30294964	ENSG00000231074.8|HCG18|lncRNA|chr6:30294676:30294964:-	0	-
#Deleted in new
chr6	30294852	30294964	ENSG00000231074.8|HCG18|lncRNA|chr6:30294852:30294964:-	0	-
#Deleted in new
chr6	30296131	30296237	ENSG00000231074.8|HCG18|lncRNA|chr6:30296131:30296237:-	0	-
#Deleted in new
chr6	30300773	30304115	ENSG00000231074.8|HCG18|lncRNA|chr6:30300773:30304115:-	0	-
#Deleted in new
chr6	30304070	30306960	ENSG00000231074.8|HCG18|lncRNA|chr6:30304070:30306960:-	0	-
#Deleted in new
chr6	30304074	30304272	ENSG00000231074.8|HCG18|lncRNA|chr6:30304074:30304272:-	0	-
#Deleted in new
chr6	30314268	30314482	ENSG00000231074.8|HCG18|lncRNA|chr6:30314268:30314482:-	0	-
#Partially deleted in new
chr6	30326150	30326347	ENSG00000231074.8|HCG18|lncRNA|chr6:30326150:30326347:-	0	-
#Partially deleted in new
chr6	30328888	30329041	ENSG00000204599.14|TRIM39|pc|chr6:30328888:30329041:+	0	+
#Partially deleted in new
chr6	30328906	30329041	ENSG00000248167.7|TRIM39-RPP21|pc|chr6:30328906:30329041:+	0	+
#Partially deleted in new
chr6	30328908	30329041	ENSG00000204599.14|TRIM39|pc|chr6:30328908:30329041:+	0	+
#Deleted in new
chr6	30341388	30341470	ENSG00000204599.14|TRIM39|pc|chr6:30341388:30341470:+	0	+
#Partially deleted in new
chr6	30345490	30345929	ENSG00000241370.5|RPP21|pc|chr6:30345490:30345929:+	0	+
#Partially deleted in new
chr6	30492748	30494205	ENSG00000204592.8|HLA-E|pc|chr6:30492748:30494205:+	0	+
#Deleted in new
chr6	30516265	30516611	ENSG00000235781.1|AL662800.1|lncRNA|chr6:30516265:30516611:+	0	+
#Deleted in new
chr6	30518712	30519217	ENSG00000235781.1|AL662800.1|lncRNA|chr6:30518712:30519217:+	0	+
#Deleted in new
chr6	3055889	3056024	ENSG00000229282.1|AL031963.2|lncRNA|chr6:3055889:3056024:+	0	+
#Partially deleted in new
chr6	30560030	30562124	ENSG00000204576.11|PRR3|pc|chr6:30560030:30562124:+	0	+
#Deleted in new
chr6	30561327	30561508	ENSG00000204576.11|PRR3|pc|chr6:30561327:30561508:+	0	+
#Deleted in new
chr6	3056498	3056761	ENSG00000229282.1|AL031963.2|lncRNA|chr6:3056498:3056761:+	0	+
#Partially deleted in new
chr6	30596568	30597179	ENSG00000204574.12|ABCF1|pc|chr6:30596568:30597179:+	0	+
#Deleted in new
chr6	3063990	3064059	ENSG00000137275.13|RIPK1|pc|chr6:3063990:3064059:+	0	+
#Deleted in new
chr6	30661755	30661983	ENSG00000204560.9|DHX16|pc|chr6:30661755:30661983:-	0	-
#Deleted in new
chr6	30691375	30691420	ENSG00000137404.14|NRM|pc|chr6:30691375:30691420:-	0	-
#Partially deleted in new
chr6	30699806	30700632	ENSG00000137337.14|MDC1|pc|chr6:30699806:30700632:-	0	-
#Partially deleted in new
chr6	30721666	30722262	ENSG00000196230.12|TUBB|pc|chr6:30721666:30722262:+	0	+
#Partially deleted in new
chr6	30721698	30722214	ENSG00000196230.12|TUBB|pc|chr6:30721698:30722214:+	0	+
#Deleted in new
chr6	30766824	30766951	ENSG00000228022.5|HCG20|lncRNA|chr6:30766824:30766951:+	0	+
#Deleted in new
chr6	30788690	30788872	ENSG00000228022.5|HCG20|lncRNA|chr6:30788690:30788872:+	0	+
#Partially deleted in new
chr6	30791425	30792250	ENSG00000228022.5|HCG20|lncRNA|chr6:30791425:30792250:+	0	+
#Deleted in new
chr6	30798653	30798772	ENSG00000214894.6|LINC00243|lncRNA|chr6:30798653:30798772:-	0	-
#Partially deleted in new
chr6	30812865	30814772	ENSG00000214894.6|LINC00243|lncRNA|chr6:30812865:30814772:-	0	-
#Deleted in new
chr6	30830514	30830659	ENSG00000214894.6|LINC00243|lncRNA|chr6:30830514:30830659:-	0	-
#Deleted in new
chr6	30847036	30847149	ENSG00000237923.1|AL662797.1|lncRNA|chr6:30847036:30847149:-	0	-
#Deleted in new
chr6	30847967	30848159	ENSG00000237923.1|AL662797.1|lncRNA|chr6:30847967:30848159:-	0	-
#Deleted in new
chr6	30866981	30869833	ENSG00000237775.1|DDR1-AS1|lncRNA|chr6:30866981:30869833:-	0	-
#Deleted in new
chr6	30874776	30875918	ENSG00000237775.1|DDR1-AS1|lncRNA|chr6:30874776:30875918:-	0	-
#Deleted in new
chr6	30876420	30876559	ENSG00000204580.13|DDR1|pc|chr6:30876420:30876559:+	0	+
#Deleted in new
chr6	30876443	30876559	ENSG00000204580.13|DDR1|pc|chr6:30876443:30876559:+	0	+
#Deleted in new
chr6	30885624	30885680	ENSG00000204580.13|DDR1|pc|chr6:30885624:30885680:+	0	+
#Partially deleted in new
chr6	30910594	30910634	ENSG00000213780.10|GTF2H4|pc|chr6:30910594:30910634:+	0	+
#Partially deleted in new
chr6	30914265	30914344	ENSG00000137411.16|VARS2|pc|chr6:30914265:30914344:+	0	+
#Partially deleted in new
chr6	30914381	30914469	ENSG00000137411.16|VARS2|pc|chr6:30914381:30914469:+	0	+
#Deleted in new
chr6	30934522	30934674	ENSG00000168631.12|DPCR1|pc|chr6:30934522:30934674:+	0	+
#Deleted in new
chr6	30937200	30937301	ENSG00000168631.12|DPCR1|pc|chr6:30937200:30937301:+	0	+
#Deleted in new
chr6	30945978	30946359	ENSG00000233529.1|HCG21|lncRNA|chr6:30945978:30946359:-	0	-
#Partially deleted in new
chr6	30987999	30989903	ENSG00000204544.5|MUC21|pc|chr6:30987999:30989903:+	0	+
#Deleted in new
chr6	31010473	31010776	ENSG00000261272.1|MUC22|pc|chr6:31010473:31010776:+	0	+
#Deleted in new
chr6	31034671	31035402	ENSG00000261272.1|MUC22|pc|chr6:31034671:31035402:+	0	+
#Deleted in new
chr6	31053449	31053531	ENSG00000228789.6|HCG22|lncRNA|chr6:31053449:31053531:+	0	+
#Deleted in new
chr6	31053499	31053531	ENSG00000228789.6|HCG22|lncRNA|chr6:31053499:31053531:+	0	+
#Deleted in new
chr6	31054071	31054516	ENSG00000228789.6|HCG22|lncRNA|chr6:31054071:31054516:+	0	+
#Deleted in new
chr6	31054099	31054516	ENSG00000228789.6|HCG22|lncRNA|chr6:31054099:31054516:+	0	+
#Deleted in new
chr6	31054201	31054516	ENSG00000228789.6|HCG22|lncRNA|chr6:31054201:31054516:+	0	+
#Deleted in new
chr6	31054206	31054505	ENSG00000228789.6|HCG22|lncRNA|chr6:31054206:31054505:+	0	+
#Deleted in new
chr6	31054206	31054516	ENSG00000228789.6|HCG22|lncRNA|chr6:31054206:31054516:+	0	+
#Deleted in new
chr6	31055709	31056474	ENSG00000228789.6|HCG22|lncRNA|chr6:31055709:31056474:+	0	+
#Partially deleted in new
chr6	31055709	31056910	ENSG00000228789.6|HCG22|lncRNA|chr6:31055709:31056910:+	0	+
#Deleted in new
chr6	31055811	31056001	ENSG00000228789.6|HCG22|lncRNA|chr6:31055811:31056001:+	0	+
#Deleted in new
chr6	31056217	31056510	ENSG00000228789.6|HCG22|lncRNA|chr6:31056217:31056510:+	0	+
#Deleted in new
chr6	31059407	31059657	ENSG00000228789.6|HCG22|lncRNA|chr6:31059407:31059657:+	0	+
#Deleted in new
chr6	31059407	31059876	ENSG00000228789.6|HCG22|lncRNA|chr6:31059407:31059876:+	0	+
#Deleted in new
chr6	31059407	31059890	ENSG00000228789.6|HCG22|lncRNA|chr6:31059407:31059890:+	0	+
#Deleted in new
chr6	31133552	31133694	ENSG00000204540.10|PSORS1C1|pc|chr6:31133552:31133694:+	0	+
#Deleted in new
chr6	31149159	31149668	ENSG00000204536.13|CCHCR1|pc|chr6:31149159:31149668:-	0	-
#Partially deleted in new
chr6	31165570	31167170	ENSG00000204531.17|POU5F1|pc|chr6:31165570:31167170:-	0	-
#Partially deleted in new
chr6	31165926	31166838	ENSG00000204531.17|POU5F1|pc|chr6:31165926:31166838:-	0	-
#Deleted in new
chr6	31166279	31166365	ENSG00000137310.11|TCF19|pc|chr6:31166279:31166365:+	0	+
#Deleted in new
chr6	31166533	31166838	ENSG00000204531.17|POU5F1|pc|chr6:31166533:31166838:-	0	-
#Deleted in new
chr6	31166997	31167159	ENSG00000137310.11|TCF19|pc|chr6:31166997:31167159:+	0	+
#Deleted in new
chr6	31174237	31174270	ENSG00000204528.3|PSORS1C3|lncRNA|chr6:31174237:31174270:-	0	-
#Deleted in new
chr6	31180618	31180731	ENSG00000204531.17|POU5F1|pc|chr6:31180618:31180731:-	0	-
#Deleted in new
chr6	3118373	3118562	ENSG00000137274.12|BPHL|pc|chr6:3118373:3118562:+	0	+
#Deleted in new
chr6	31195199	31198037	ENSG00000272501.1|AL662844.4|lncRNA|chr6:31195199:31198037:-	0	-
#Deleted in new
chr6	31197759	31197882	ENSG00000206344.7|HCG27|lncRNA|chr6:31197759:31197882:+	0	+
#Deleted in new
chr6	31197836	31197880	ENSG00000206344.7|HCG27|lncRNA|chr6:31197836:31197880:+	0	+
#Deleted in new
chr6	31198137	31198181	ENSG00000206344.7|HCG27|lncRNA|chr6:31198137:31198181:+	0	+
#Deleted in new
chr6	31198139	31198200	ENSG00000206344.7|HCG27|lncRNA|chr6:31198139:31198200:+	0	+
#Deleted in new
chr6	31199954	31200722	ENSG00000206344.7|HCG27|lncRNA|chr6:31199954:31200722:+	0	+
#Deleted in new
chr6	31200164	31200638	ENSG00000271821.1|AL662844.3|lncRNA|chr6:31200164:31200638:-	0	-
#Deleted in new
chr6	31201875	31201918	ENSG00000271821.1|AL662844.3|lncRNA|chr6:31201875:31201918:-	0	-
#Deleted in new
chr6	31202012	31202053	ENSG00000206344.7|HCG27|lncRNA|chr6:31202012:31202053:+	0	+
#Partially deleted in new
chr6	31202371	31203968	ENSG00000206344.7|HCG27|lncRNA|chr6:31202371:31203968:+	0	+
#Deleted in new
chr6	31293907	31294121	ENSG00000256166.1|AL671883.2|lncRNA|chr6:31293907:31294121:-	0	-
#Deleted in new
chr6	31294214	31294295	ENSG00000256166.1|AL671883.2|lncRNA|chr6:31294214:31294295:-	0	-
#Deleted in new
chr6	31294943	31295013	ENSG00000256166.1|AL671883.2|lncRNA|chr6:31294943:31295013:-	0	-
#Deleted in new
chr6	31301471	31301642	ENSG00000256166.1|AL671883.2|lncRNA|chr6:31301471:31301642:-	0	-
#Deleted in new
chr6	3138040	3138083	ENSG00000137274.12|BPHL|pc|chr6:3138040:3138083:+	0	+
#Deleted in new
chr6	3138040	3138179	ENSG00000137274.12|BPHL|pc|chr6:3138040:3138179:+	0	+
#Deleted in new
chr6	31394288	31395495	ENSG00000272221.1|AL645933.2|lncRNA|chr6:31394288:31395495:-	0	-
#Deleted in new
chr6	31399783	31400783	ENSG00000204520.12|MICA|pc|chr6:31399783:31400783:+	0	+
#Deleted in new
chr6	31400701	31400763	ENSG00000206337.10|HCP5|lncRNA|chr6:31400701:31400763:+	0	+
#Deleted in new
chr6	31403578	31403702	ENSG00000204520.12|MICA|pc|chr6:31403578:31403702:+	0	+
#Deleted in new
chr6	31403671	31403702	ENSG00000204520.12|MICA|pc|chr6:31403671:31403702:+	0	+
#Deleted in new
chr6	31412324	31412460	ENSG00000204520.12|MICA|pc|chr6:31412324:31412460:+	0	+
#Deleted in new
chr6	31415011	31415313	ENSG00000204520.12|MICA|pc|chr6:31415011:31415313:+	0	+
#Deleted in new
chr6	31415011	31415315	ENSG00000204520.12|MICA|pc|chr6:31415011:31415315:+	0	+
#Deleted in new
chr6	31441666	31442311	ENSG00000230174.1|LINC01149|lncRNA|chr6:31441666:31442311:+	0	+
#Deleted in new
chr6	31445477	31446973	ENSG00000230174.1|LINC01149|lncRNA|chr6:31445477:31446973:+	0	+
#Deleted in new
chr6	31463370	31463508	ENSG00000206337.10|HCP5|lncRNA|chr6:31463370:31463508:+	0	+
#Deleted in new
chr6	31463370	31465704	ENSG00000206337.10|HCP5|lncRNA|chr6:31463370:31465704:+	0	+
#Deleted in new
chr6	31463370	31465809	ENSG00000206337.10|HCP5|lncRNA|chr6:31463370:31465809:+	0	+
#Deleted in new
chr6	31463589	31463821	ENSG00000206337.10|HCP5|lncRNA|chr6:31463589:31463821:+	0	+
#Deleted in new
chr6	31477026	31477506	ENSG00000206337.10|HCP5|lncRNA|chr6:31477026:31477506:+	0	+
#Deleted in new
chr6	31494880	31494995	ENSG00000204516.9|MICB|pc|chr6:31494880:31494995:+	0	+
#Deleted in new
chr6	31498085	31498263	ENSG00000204516.9|MICB|pc|chr6:31498085:31498263:+	0	+
#Deleted in new
chr6	31498114	31498263	ENSG00000204516.9|MICB|pc|chr6:31498114:31498263:+	0	+
#Partially deleted in new
chr6	31506271	31506430	ENSG00000204516.9|MICB|pc|chr6:31506271:31506430:+	0	+
#Deleted in new
chr6	31507399	31507531	ENSG00000204516.9|MICB|pc|chr6:31507399:31507531:+	0	+
#Deleted in new
chr6	31509781	31511123	ENSG00000204516.9|MICB|pc|chr6:31509781:31511123:+	0	+
#Deleted in new
chr6	31509781	31511124	ENSG00000204516.9|MICB|pc|chr6:31509781:31511124:+	0	+
#Partially deleted in new
chr6	31528716	31529185	ENSG00000204511.2|MCCD1|pc|chr6:31528716:31529185:+	0	+
#Partially deleted in new
chr6	31529746	31530232	ENSG00000204511.2|MCCD1|pc|chr6:31529746:31530232:+	0	+
#Partially deleted in new
chr6	31531295	31531744	ENSG00000198563.13|DDX39B|pc|chr6:31531295:31531744:-	0	-
#Partially deleted in new
chr6	31541395	31541484	ENSG00000198563.13|DDX39B|pc|chr6:31541395:31541484:-	0	-
#Deleted in new
chr6	31542704	31543127	ENSG00000234006.1|DDX39B-AS1|lncRNA|chr6:31542704:31543127:+	0	+
#Deleted in new
chr6	31542708	31543138	ENSG00000234006.1|DDX39B-AS1|lncRNA|chr6:31542708:31543138:+	0	+
#Deleted in new
chr6	31587021	31587318	ENSG00000204482.10|LST1|pc|chr6:31587021:31587318:+	0	+
#Deleted in new
chr6	31587053	31587318	ENSG00000204482.10|LST1|pc|chr6:31587053:31587318:+	0	+
#Deleted in new
chr6	31587085	31587106	ENSG00000204482.10|LST1|pc|chr6:31587085:31587106:+	0	+
#Deleted in new
chr6	31587116	31587318	ENSG00000204482.10|LST1|pc|chr6:31587116:31587318:+	0	+
#Deleted in new
chr6	31587199	31587318	ENSG00000204482.10|LST1|pc|chr6:31587199:31587318:+	0	+
#Deleted in new
chr6	31587254	31587318	ENSG00000204482.10|LST1|pc|chr6:31587254:31587318:+	0	+
#Deleted in new
chr6	31587299	31587318	ENSG00000204482.10|LST1|pc|chr6:31587299:31587318:+	0	+
#Deleted in new
chr6	31587315	31587318	ENSG00000204482.10|LST1|pc|chr6:31587315:31587318:+	0	+
#Partially deleted in new
chr6	31592790	31592812	ENSG00000204475.9|NCR3|pc|chr6:31592790:31592812:-	0	-
#Partially deleted in new
chr6	31673160	31673776	ENSG00000240053.8|LY6G5B|pc|chr6:31673160:31673776:+	0	+
#Deleted in new
chr6	31681229	31681401	ENSG00000204428.12|LY6G5C|pc|chr6:31681229:31681401:-	0	-
#Deleted in new
chr6	31681229	31681476	ENSG00000204428.12|LY6G5C|pc|chr6:31681229:31681476:-	0	-
#Deleted in new
chr6	31681347	31681401	ENSG00000204428.12|LY6G5C|pc|chr6:31681347:31681401:-	0	-
#Deleted in new
chr6	31681645	31681960	ENSG00000204428.12|LY6G5C|pc|chr6:31681645:31681960:-	0	-
#Partially deleted in new
chr6	31683049	31683341	ENSG00000204428.12|LY6G5C|pc|chr6:31683049:31683341:-	0	-
#Deleted in new
chr6	31723003	31723138	ENSG00000204420.8|MPIG6B|pc|chr6:31723003:31723138:+	0	+
#Partially deleted in new
chr6	31736795	31737318	ENSG00000213719.8|CLIC1|pc|chr6:31736795:31737318:-	0	-
#Deleted in new
chr6	31746141	31746331	ENSG00000204410.14|MSH5|pc|chr6:31746141:31746331:+	0	+
#Deleted in new
chr6	31751495	31751653	ENSG00000204410.14|MSH5|pc|chr6:31751495:31751653:+	0	+
#Partially deleted in new
chr6	31753566	31754040	ENSG00000204410.14|MSH5|pc|chr6:31753566:31754040:+	0	+
#Deleted in new
chr6	31756591	31756916	ENSG00000204410.14|MSH5|pc|chr6:31756591:31756916:+	0	+
#Partially deleted in new
chr6	31761749	31761780	ENSG00000204410.14|MSH5|pc|chr6:31761749:31761780:+	0	+
#Deleted in new
chr6	31771269	31771823	ENSG00000204396.10|VWA7|pc|chr6:31771269:31771823:-	0	-
#Partially deleted in new
chr6	31777935	31778182	ENSG00000204394.12|VARS|pc|chr6:31777935:31778182:-	0	-
#Deleted in new
chr6	31802879	31802905	ENSG00000204392.10|LSM2|pc|chr6:31802879:31802905:-	0	-
#Deleted in new
chr6	31834626	31834768	ENSG00000204387.12|C6orf48|pc|chr6:31834626:31834768:+	0	+
#Partially deleted in new
chr6	31834907	31835057	ENSG00000204387.12|C6orf48|pc|chr6:31834907:31835057:+	0	+
#Deleted in new
chr6	31836294	31836517	ENSG00000204387.12|C6orf48|pc|chr6:31836294:31836517:+	0	+
#Deleted in new
chr6	31836298	31836517	ENSG00000204387.12|C6orf48|pc|chr6:31836298:31836517:+	0	+
#Deleted in new
chr6	31836423	31836517	ENSG00000204387.12|C6orf48|pc|chr6:31836423:31836517:+	0	+
#Partially deleted in new
chr6	31837235	31837435	ENSG00000204387.12|C6orf48|pc|chr6:31837235:31837435:+	0	+
#Deleted in new
chr6	31839542	31839761	ENSG00000204387.12|C6orf48|pc|chr6:31839542:31839761:+	0	+
#Deleted in new
chr6	31839542	31839764	ENSG00000204387.12|C6orf48|pc|chr6:31839542:31839764:+	0	+
#Deleted in new
chr6	31839542	31839766	ENSG00000204387.12|C6orf48|pc|chr6:31839542:31839766:+	0	+
#Partially deleted in new
chr6	31884911	31886437	ENSG00000204371.11|EHMT2|pc|chr6:31884911:31886437:-	0	-
#Partially deleted in new
chr6	31892825	31893186	ENSG00000204371.11|EHMT2|pc|chr6:31892825:31893186:-	0	-
#Deleted in new
chr6	31893361	31893662	ENSG00000204371.11|EHMT2|pc|chr6:31893361:31893662:-	0	-
#Deleted in new
chr6	3190826	3191230	ENSG00000230269.6|LINC02525|lncRNA|chr6:3190826:3191230:-	0	-
#Deleted in new
chr6	3190826	3191257	ENSG00000230269.6|LINC02525|lncRNA|chr6:3190826:3191257:-	0	-
#Deleted in new
chr6	31932347	31932493	ENSG00000166278.14|C2|pc|chr6:31932347:31932493:+	0	+
#Deleted in new
chr6	31935339	31935402	ENSG00000281756.1|C2-AS1|lncRNA|chr6:31935339:31935402:-	0	-
#Deleted in new
chr6	31941184	31941724	ENSG00000281756.1|C2-AS1|lncRNA|chr6:31941184:31941724:-	0	-
#Deleted in new
chr6	3195665	3195747	ENSG00000230269.6|LINC02525|lncRNA|chr6:3195665:3195747:-	0	-
#Deleted in new
chr6	3195665	3195756	ENSG00000230269.6|LINC02525|lncRNA|chr6:3195665:3195756:-	0	-
#Duplicated in new
chr6	31979413	31979862	ENSG00000204344.14|STK19|pc|chr6:31979413:31979862:+	0	+
#Duplicated in new
chr6	32038339	32038811	ENSG00000231852.6|CYP21A2|pc|chr6:32038339:32038811:+	0	+
#Duplicated in new
chr6	32038364	32038811	ENSG00000231852.6|CYP21A2|pc|chr6:32038364:32038811:+	0	+
#Duplicated in new
chr6	32038369	32038811	ENSG00000231852.6|CYP21A2|pc|chr6:32038369:32038811:+	0	+
#Duplicated in new
chr6	32038721	32039115	ENSG00000231852.6|CYP21A2|pc|chr6:32038721:32039115:+	0	+
#Deleted in new
chr6	32194309	32194390	ENSG00000213654.9|GPSM3|pc|chr6:32194309:32194390:-	0	-
#Partially deleted in new
chr6	32215859	32217067	ENSG00000204301.6|NOTCH4|pc|chr6:32215859:32217067:-	0	-
#Deleted in new
chr6	32255283	32255414	ENSG00000277427.1|AL671511.2|lncRNA|chr6:32255283:32255414:+	0	+
#Deleted in new
chr6	32255710	32255941	ENSG00000225914.1|AL671511.1|lncRNA|chr6:32255710:32255941:+	0	+
#Deleted in new
chr6	32262611	32265838	ENSG00000225914.1|AL671511.1|lncRNA|chr6:32262611:32265838:+	0	+
#Deleted in new
chr6	32288525	32288669	ENSG00000204296.11|C6orf10|pc|chr6:32288525:32288669:-	0	-
#Deleted in new
chr6	32293668	32293737	ENSG00000204296.11|C6orf10|pc|chr6:32293668:32293737:-	0	-
#Partially deleted in new
chr6	32293739	32294035	ENSG00000204296.11|C6orf10|pc|chr6:32293739:32294035:-	0	-
#Deleted in new
chr6	32302608	32302629	ENSG00000204296.11|C6orf10|pc|chr6:32302608:32302629:-	0	-
#Deleted in new
chr6	32323590	32323614	ENSG00000204296.11|C6orf10|pc|chr6:32323590:32323614:-	0	-
#Deleted in new
chr6	32323592	32323610	ENSG00000204296.11|C6orf10|pc|chr6:32323592:32323610:-	0	-
#Deleted in new
chr6	32323859	32323864	ENSG00000204296.11|C6orf10|pc|chr6:32323859:32323864:-	0	-
#Deleted in new
chr6	32324655	32324679	ENSG00000204296.11|C6orf10|pc|chr6:32324655:32324679:-	0	-
#Deleted in new
chr6	32339599	32339638	ENSG00000204296.11|C6orf10|pc|chr6:32339599:32339638:-	0	-
#Deleted in new
chr6	32355648	32355664	ENSG00000204296.11|C6orf10|pc|chr6:32355648:32355664:-	0	-
#Deleted in new
chr6	32355648	32355665	ENSG00000204296.11|C6orf10|pc|chr6:32355648:32355665:-	0	-
#Deleted in new
chr6	32355648	32355669	ENSG00000204296.11|C6orf10|pc|chr6:32355648:32355669:-	0	-
#Deleted in new
chr6	32355666	32355682	ENSG00000204296.11|C6orf10|pc|chr6:32355666:32355682:-	0	-
#Deleted in new
chr6	32356840	32356845	ENSG00000204296.11|C6orf10|pc|chr6:32356840:32356845:-	0	-
#Deleted in new
chr6	32390509	32390753	ENSG00000228962.1|HCG23|lncRNA|chr6:32390509:32390753:+	0	+
#Deleted in new
chr6	32391612	32391740	ENSG00000228962.1|HCG23|lncRNA|chr6:32391612:32391740:+	0	+
#Deleted in new
chr6	32393448	32393686	ENSG00000228962.1|HCG23|lncRNA|chr6:32393448:32393686:+	0	+
#Deleted in new
chr6	3244092	3244253	ENSG00000180822.11|PSMG4|pc|chr6:3244092:3244253:+	0	+
#Deleted in new
chr6	325166	326158	ENSG00000112679.14|DUSP22|pc|chr6:325166:326158:+	0	+
#Deleted in new
chr6	32517342	32517752	ENSG00000198502.5|HLA-DRB5|pc|chr6:32517342:32517752:-	0	-
#Deleted in new
chr6	32518053	32518077	ENSG00000198502.5|HLA-DRB5|pc|chr6:32518053:32518077:-	0	-
#Deleted in new
chr6	3255050	3255229	ENSG00000180822.11|PSMG4|pc|chr6:3255050:3255229:+	0	+
#Deleted in new
chr6	32631941	32632092	ENSG00000196735.11|HLA-DQA1|pc|chr6:32631941:32632092:+	0	+
#Deleted in new
chr6	32632743	32632909	ENSG00000196735.11|HLA-DQA1|pc|chr6:32632743:32632909:+	0	+
#Partially deleted in new
chr6	32659466	32660249	ENSG00000179344.16|HLA-DQB1|pc|chr6:32659466:32660249:-	0	-
#Partially deleted in new
chr6	32659879	32660056	ENSG00000223534.1|HLA-DQB1-AS1|lncRNA|chr6:32659879:32660056:+	0	+
#Deleted in new
chr6	32718004	32718147	ENSG00000232080.5|AL662789.1|lncRNA|chr6:32718004:32718147:+	0	+
#Deleted in new
chr6	32718028	32718147	ENSG00000232080.5|AL662789.1|lncRNA|chr6:32718028:32718147:+	0	+
#Deleted in new
chr6	32718028	32718440	ENSG00000232080.5|AL662789.1|lncRNA|chr6:32718028:32718440:+	0	+
#Deleted in new
chr6	32718384	32718440	ENSG00000232080.5|AL662789.1|lncRNA|chr6:32718384:32718440:+	0	+
#Deleted in new
chr6	32718405	32718440	ENSG00000232080.5|AL662789.1|lncRNA|chr6:32718405:32718440:+	0	+
#Deleted in new
chr6	32718589	32718811	ENSG00000232080.5|AL662789.1|lncRNA|chr6:32718589:32718811:+	0	+
#Deleted in new
chr6	32718589	32718832	ENSG00000232080.5|AL662789.1|lncRNA|chr6:32718589:32718832:+	0	+
#Deleted in new
chr6	32718589	32718835	ENSG00000232080.5|AL662789.1|lncRNA|chr6:32718589:32718835:+	0	+
#Deleted in new
chr6	32718589	32719170	ENSG00000232080.5|AL662789.1|lncRNA|chr6:32718589:32719170:+	0	+
#Deleted in new
chr6	3276680	3276976	ENSG00000137266.14|SLC22A23|pc|chr6:3276680:3276976:-	0	-
#Deleted in new
chr6	32821832	32822318	ENSG00000204267.13|TAP2|pc|chr6:32821832:32822318:-	0	-
#Deleted in new
chr6	32838652	32838727	ENSG00000204267.13|TAP2|pc|chr6:32838652:32838727:-	0	-
#Deleted in new
chr6	32838652	32838770	ENSG00000204267.13|TAP2|pc|chr6:32838652:32838770:-	0	-
#Deleted in new
chr6	32838652	32838780	ENSG00000204267.13|TAP2|pc|chr6:32838652:32838780:-	0	-
#Deleted in new
chr6	32838652	32838822	ENSG00000250264.1|AL669918.1|pc|chr6:32838652:32838822:-	0	-
#Deleted in new
chr6	32979089	32979194	ENSG00000204256.12|BRD2|pc|chr6:32979089:32979194:+	0	+
#Deleted in new
chr6	3302857	3303373	ENSG00000180822.11|PSMG4|pc|chr6:3302857:3303373:+	0	+
#Deleted in new
chr6	33080385	33080534	ENSG00000223865.10|HLA-DPB1|pc|chr6:33080385:33080534:+	0	+
#Deleted in new
chr6	33080486	33080534	ENSG00000223865.10|HLA-DPB1|pc|chr6:33080486:33080534:+	0	+
#Duplicated in new
chr6	33080671	33080935	ENSG00000223865.10|HLA-DPB1|pc|chr6:33080671:33080935:+	0	+
#Split in new
chr6	33080671	33081232	ENSG00000223865.10|HLA-DPB1|pc|chr6:33080671:33081232:+	0	+
#Duplicated in new
chr6	33080688	33080935	ENSG00000223865.10|HLA-DPB1|pc|chr6:33080688:33080935:+	0	+
#Partially deleted in new
chr6	33080940	33081231	ENSG00000223865.10|HLA-DPB1|pc|chr6:33080940:33081231:+	0	+
#Deleted in new
chr6	33082006	33082138	ENSG00000223865.10|HLA-DPB1|pc|chr6:33082006:33082138:+	0	+
#Deleted in new
chr6	33083513	33083890	ENSG00000223865.10|HLA-DPB1|pc|chr6:33083513:33083890:+	0	+
#Deleted in new
chr6	33083513	33084012	ENSG00000223865.10|HLA-DPB1|pc|chr6:33083513:33084012:+	0	+
#Deleted in new
chr6	33086538	33087201	ENSG00000223865.10|HLA-DPB1|pc|chr6:33086538:33087201:+	0	+
#Deleted in new
chr6	33144782	33144946	ENSG00000230313.1|HCG24|lncRNA|chr6:33144782:33144946:+	0	+
#Deleted in new
chr6	33147214	33147767	ENSG00000230313.1|HCG24|lncRNA|chr6:33147214:33147767:+	0	+
#Deleted in new
chr6	3323265	3323318	ENSG00000137266.14|SLC22A23|pc|chr6:3323265:3323318:-	0	-
#Partially deleted in new
chr6	3324096	3324165	ENSG00000137266.14|SLC22A23|pc|chr6:3324096:3324165:-	0	-
#Partially deleted in new
chr6	3324096	3324183	ENSG00000137266.14|SLC22A23|pc|chr6:3324096:3324183:-	0	-
#Deleted in new
chr6	33246074	33246550	ENSG00000272217.1|AL645940.1|lncRNA|chr6:33246074:33246550:-	0	-
#Deleted in new
chr6	33246738	33246856	ENSG00000272217.1|AL645940.1|lncRNA|chr6:33246738:33246856:-	0	-
#Deleted in new
chr6	33249533	33249655	ENSG00000232940.5|HCG25|lncRNA|chr6:33249533:33249655:+	0	+
#Deleted in new
chr6	33249583	33249655	ENSG00000232940.5|HCG25|lncRNA|chr6:33249583:33249655:+	0	+
#Deleted in new
chr6	33249595	33249655	ENSG00000232940.5|HCG25|lncRNA|chr6:33249595:33249655:+	0	+
#Deleted in new
chr6	33254697	33254944	ENSG00000232940.5|HCG25|lncRNA|chr6:33254697:33254944:+	0	+
#Deleted in new
chr6	33254697	33254989	ENSG00000232940.5|HCG25|lncRNA|chr6:33254697:33254989:+	0	+
#Partially deleted in new
chr6	33275320	33275883	ENSG00000231500.6|RPS18|pc|chr6:33275320:33275883:+	0	+
#Deleted in new
chr6	33275499	33275657	ENSG00000231500.6|RPS18|pc|chr6:33275499:33275657:+	0	+
#Deleted in new
chr6	33284345	33284832	ENSG00000235863.3|B3GALT4|pc|chr6:33284345:33284832:+	0	+
#Partially deleted in new
chr6	33299693	33301771	ENSG00000231925.11|TAPBP|pc|chr6:33299693:33301771:-	0	-
#Deleted in new
chr6	33308104	33308158	ENSG00000231925.11|TAPBP|pc|chr6:33308104:33308158:-	0	-
#Partially deleted in new
chr6	33586105	33587870	ENSG00000197251.3|LINC00336|lncRNA|chr6:33586105:33587870:-	0	-
#Deleted in new
chr6	33592996	33593338	ENSG00000197251.3|LINC00336|lncRNA|chr6:33592996:33593338:-	0	-
#Deleted in new
chr6	338005	338081	ENSG00000112679.14|DUSP22|pc|chr6:338005:338081:+	0	+
#Partially deleted in new
chr6	33889510	33892451	ENSG00000249346.6|LINC01016|lncRNA|chr6:33889510:33892451:-	0	-
#Partially deleted in new
chr6	33893578	33893653	ENSG00000249346.6|LINC01016|lncRNA|chr6:33893578:33893653:-	0	-
#Deleted in new
chr6	33920925	33921014	ENSG00000233183.2|AL138889.1|lncRNA|chr6:33920925:33921014:+	0	+
#Deleted in new
chr6	34024218	34024713	ENSG00000124493.13|GRM4|pc|chr6:34024218:34024713:-	0	-
#Deleted in new
chr6	34099994	34100088	ENSG00000124493.13|GRM4|pc|chr6:34099994:34100088:-	0	-
#Deleted in new
chr6	34105924	34105967	ENSG00000124493.13|GRM4|pc|chr6:34105924:34105967:-	0	-
#Deleted in new
chr6	34110659	34111034	ENSG00000124493.13|GRM4|pc|chr6:34110659:34111034:-	0	-
#Partially deleted in new
chr6	34277907	34278116	ENSG00000225339.3|AL354740.1|lncRNA|chr6:34277907:34278116:+	0	+
#Partially deleted in new
chr6	34279139	34281321	ENSG00000225339.3|AL354740.1|lncRNA|chr6:34279139:34281321:+	0	+
#Partially deleted in new
chr6	34279703	34286768	ENSG00000225339.3|AL354740.1|lncRNA|chr6:34279703:34286768:+	0	+
#Deleted in new
chr6	34281914	34282562	ENSG00000225339.3|AL354740.1|lncRNA|chr6:34281914:34282562:+	0	+
#Deleted in new
chr6	34283872	34284268	ENSG00000225339.3|AL354740.1|lncRNA|chr6:34283872:34284268:+	0	+
#Deleted in new
chr6	34283872	34284454	ENSG00000225339.3|AL354740.1|lncRNA|chr6:34283872:34284454:+	0	+
#Deleted in new
chr6	34485069	34485144	ENSG00000124507.10|PACSIN1|pc|chr6:34485069:34485144:+	0	+
#Deleted in new
chr6	34671835	34671956	ENSG00000196821.9|C6orf106|pc|chr6:34671835:34671956:-	0	-
#Deleted in new
chr6	35128282	35128419	ENSG00000124678.17|TCP11|pc|chr6:35128282:35128419:-	0	-
#Deleted in new
chr6	35128357	35128419	ENSG00000124678.17|TCP11|pc|chr6:35128357:35128419:-	0	-
#Deleted in new
chr6	35128579	35128791	ENSG00000124678.17|TCP11|pc|chr6:35128579:35128791:-	0	-
#Deleted in new
chr6	35128688	35128791	ENSG00000124678.17|TCP11|pc|chr6:35128688:35128791:-	0	-
#Deleted in new
chr6	35128704	35128791	ENSG00000124678.17|TCP11|pc|chr6:35128704:35128791:-	0	-
#Deleted in new
chr6	35137690	35137852	ENSG00000124678.17|TCP11|pc|chr6:35137690:35137852:-	0	-
#Deleted in new
chr6	35137745	35137852	ENSG00000124678.17|TCP11|pc|chr6:35137745:35137852:-	0	-
#Partially deleted in new
chr6	35140019	35140225	ENSG00000124678.17|TCP11|pc|chr6:35140019:35140225:-	0	-
#Deleted in new
chr6	35140505	35140597	ENSG00000124678.17|TCP11|pc|chr6:35140505:35140597:-	0	-
#Deleted in new
chr6	35141204	35141253	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141253:-	0	-
#Deleted in new
chr6	35141204	35141264	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141264:-	0	-
#Deleted in new
chr6	35141204	35141310	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141310:-	0	-
#Deleted in new
chr6	35141204	35141311	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141311:-	0	-
#Deleted in new
chr6	35141204	35141313	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141313:-	0	-
#Deleted in new
chr6	35141204	35141316	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141316:-	0	-
#Deleted in new
chr6	35141204	35141323	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141323:-	0	-
#Deleted in new
chr6	35141204	35141336	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141336:-	0	-
#Deleted in new
chr6	35141204	35141339	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141339:-	0	-
#Deleted in new
chr6	35141204	35141349	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141349:-	0	-
#Deleted in new
chr6	35141204	35141353	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141353:-	0	-
#Deleted in new
chr6	35141204	35141371	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141371:-	0	-
#Deleted in new
chr6	35141204	35141410	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141410:-	0	-
#Deleted in new
chr6	35141204	35141647	ENSG00000124678.17|TCP11|pc|chr6:35141204:35141647:-	0	-
#Partially deleted in new
chr6	35220369	35224630	ENSG00000272374.1|Z97832.2|lncRNA|chr6:35220369:35224630:-	0	-
#Partially deleted in new
chr6	35258908	35259386	ENSG00000065029.14|ZNF76|pc|chr6:35258908:35259386:+	0	+
#Partially deleted in new
chr6	35258981	35259386	ENSG00000065029.14|ZNF76|pc|chr6:35258981:35259386:+	0	+
#Deleted in new
chr6	35270411	35270523	ENSG00000065029.14|ZNF76|pc|chr6:35270411:35270523:+	0	+
#Deleted in new
chr6	35397497	35397593	ENSG00000112033.13|PPARD|pc|chr6:35397497:35397593:+	0	+
#Deleted in new
chr6	35544631	35544705	ENSG00000228559.1|AL033519.3|lncRNA|chr6:35544631:35544705:+	0	+
#Deleted in new
chr6	35544867	35544933	ENSG00000228559.1|AL033519.3|lncRNA|chr6:35544867:35544933:+	0	+
#Deleted in new
chr6	35545214	35545669	ENSG00000228559.1|AL033519.3|lncRNA|chr6:35545214:35545669:+	0	+
#Split in new
chr6	35580556	35587117	ENSG00000096060.14|FKBP5|pc|chr6:35580556:35587117:-	0	-
#Deleted in new
chr6	35733866	35734027	ENSG00000232909.1|AL157823.2|lncRNA|chr6:35733866:35734027:-	0	-
#Deleted in new
chr6	35735079	35735364	ENSG00000232909.1|AL157823.2|lncRNA|chr6:35735079:35735364:-	0	-
#Deleted in new
chr6	35735762	35735878	ENSG00000232909.1|AL157823.2|lncRNA|chr6:35735762:35735878:-	0	-
#Partially deleted in new
chr6	35736840	35736947	ENSG00000232909.1|AL157823.2|lncRNA|chr6:35736840:35736947:-	0	-
#Deleted in new
chr6	35776593	35776804	ENSG00000196748.9|CLPSL2|pc|chr6:35776593:35776804:+	0	+
#Deleted in new
chr6	35776614	35776702	ENSG00000196748.9|CLPSL2|pc|chr6:35776614:35776702:+	0	+
#Deleted in new
chr6	35776618	35776702	ENSG00000196748.9|CLPSL2|pc|chr6:35776618:35776702:+	0	+
#Deleted in new
chr6	35776689	35776804	ENSG00000196748.9|CLPSL2|pc|chr6:35776689:35776804:+	0	+
#Deleted in new
chr6	35777850	35777929	ENSG00000196748.9|CLPSL2|pc|chr6:35777850:35777929:+	0	+
#Deleted in new
chr6	35781016	35781209	ENSG00000204140.9|CLPSL1|pc|chr6:35781016:35781209:+	0	+
#Deleted in new
chr6	35786997	35787120	ENSG00000204140.9|CLPSL1|pc|chr6:35786997:35787120:+	0	+
#Deleted in new
chr6	35787039	35787120	ENSG00000204140.9|CLPSL1|pc|chr6:35787039:35787120:+	0	+
#Deleted in new
chr6	35787866	35788152	ENSG00000204140.9|CLPSL1|pc|chr6:35787866:35788152:+	0	+
#Deleted in new
chr6	35793487	35793675	ENSG00000204140.9|CLPSL1|pc|chr6:35793487:35793675:+	0	+
#Deleted in new
chr6	35796808	35796850	ENSG00000137392.9|CLPS|pc|chr6:35796808:35796850:-	0	-
#Deleted in new
chr6	35811244	35811435	ENSG00000197753.8|LHFPL5|pc|chr6:35811244:35811435:+	0	+
#Deleted in new
chr6	35819436	35819463	ENSG00000197753.8|LHFPL5|pc|chr6:35819436:35819463:+	0	+
#Deleted in new
chr6	35819436	35819820	ENSG00000197753.8|LHFPL5|pc|chr6:35819436:35819820:+	0	+
#Partially deleted in new
chr6	35822981	35824075	ENSG00000197753.8|LHFPL5|pc|chr6:35822981:35824075:+	0	+
#Deleted in new
chr6	35895658	35895719	ENSG00000096063.15|SRPK1|pc|chr6:35895658:35895719:-	0	-
#Deleted in new
chr6	35904878	35904974	ENSG00000096063.15|SRPK1|pc|chr6:35904878:35904974:-	0	-
#Deleted in new
chr6	3594246	3594535	ENSG00000228793.1|AL138881.1|lncRNA|chr6:3594246:3594535:-	0	-
#Partially deleted in new
chr6	36024736	36024780	ENSG00000112053.13|SLC26A8|pc|chr6:36024736:36024780:-	0	-
#Partially deleted in new
chr6	36024736	36024868	ENSG00000112053.13|SLC26A8|pc|chr6:36024736:36024868:-	0	-
#Partially deleted in new
chr6	36139293	36140065	ENSG00000156711.16|MAPK13|pc|chr6:36139293:36140065:+	0	+
#Partially deleted in new
chr6	36139293	36144524	ENSG00000156711.16|MAPK13|pc|chr6:36139293:36144524:+	0	+
#Deleted in new
chr6	36146697	36146930	ENSG00000246982.6|Z84485.1|lncRNA|chr6:36146697:36146930:-	0	-
#Deleted in new
chr6	36158067	36158941	ENSG00000246982.6|Z84485.1|lncRNA|chr6:36158067:36158941:-	0	-
#Deleted in new
chr6	36179616	36179707	ENSG00000246982.6|Z84485.1|lncRNA|chr6:36179616:36179707:-	0	-
#Deleted in new
chr6	3623647	3623943	ENSG00000228793.1|AL138881.1|lncRNA|chr6:3623647:3623943:-	0	-
#Deleted in new
chr6	36243202	36243261	ENSG00000180316.12|PNPLA1|pc|chr6:36243202:36243261:+	0	+
#Partially deleted in new
chr6	3624543	3624747	ENSG00000228793.1|AL138881.1|lncRNA|chr6:3624543:3624747:-	0	-
#Partially deleted in new
chr6	36307586	36308595	ENSG00000180316.12|PNPLA1|pc|chr6:36307586:36308595:+	0	+
#Deleted in new
chr6	36354090	36354687	ENSG00000010030.13|ETV7|pc|chr6:36354090:36354687:-	0	-
#Deleted in new
chr6	36354220	36354687	ENSG00000010030.13|ETV7|pc|chr6:36354220:36354687:-	0	-
#Deleted in new
chr6	36366193	36366762	ENSG00000010030.13|ETV7|pc|chr6:36366193:36366762:-	0	-
#Deleted in new
chr6	36366194	36366762	ENSG00000010030.13|ETV7|pc|chr6:36366194:36366762:-	0	-
#Deleted in new
chr6	36371329	36371560	ENSG00000010030.13|ETV7|pc|chr6:36371329:36371560:-	0	-
#Deleted in new
chr6	36373452	36373578	ENSG00000010030.13|ETV7|pc|chr6:36373452:36373578:-	0	-
#Deleted in new
chr6	36375829	36376035	ENSG00000010030.13|ETV7|pc|chr6:36375829:36376035:-	0	-
#Deleted in new
chr6	36375870	36376035	ENSG00000010030.13|ETV7|pc|chr6:36375870:36376035:-	0	-
#Deleted in new
chr6	36385533	36385669	ENSG00000010030.13|ETV7|pc|chr6:36385533:36385669:-	0	-
#Deleted in new
chr6	36386830	36386930	ENSG00000224666.3|Z84484.1|lncRNA|chr6:36386830:36386930:+	0	+
#Deleted in new
chr6	36387535	36387566	ENSG00000010030.13|ETV7|pc|chr6:36387535:36387566:-	0	-
#Deleted in new
chr6	36387535	36387616	ENSG00000010030.13|ETV7|pc|chr6:36387535:36387616:-	0	-
#Deleted in new
chr6	36387535	36387783	ENSG00000010030.13|ETV7|pc|chr6:36387535:36387783:-	0	-
#Deleted in new
chr6	36387535	36387800	ENSG00000010030.13|ETV7|pc|chr6:36387535:36387800:-	0	-
#Partially deleted in new
chr6	36390550	36391874	ENSG00000179165.10|PXT1|pc|chr6:36390550:36391874:-	0	-
#Deleted in new
chr6	36391000	36391440	ENSG00000179165.10|PXT1|pc|chr6:36391000:36391440:-	0	-
#Deleted in new
chr6	36391906	36391924	ENSG00000224666.3|Z84484.1|lncRNA|chr6:36391906:36391924:+	0	+
#Deleted in new
chr6	36393066	36393083	ENSG00000224666.3|Z84484.1|lncRNA|chr6:36393066:36393083:+	0	+
#Deleted in new
chr6	36393437	36393462	ENSG00000224666.3|Z84484.1|lncRNA|chr6:36393437:36393462:+	0	+
#Partially deleted in new
chr6	36443417	36443530	ENSG00000112078.13|KCTD20|pc|chr6:36443417:36443530:+	0	+
#Deleted in new
chr6	36451533	36451632	ENSG00000112078.13|KCTD20|pc|chr6:36451533:36451632:+	0	+
#Deleted in new
chr6	36452563	36452680	ENSG00000112078.13|KCTD20|pc|chr6:36452563:36452680:+	0	+
#Deleted in new
chr6	36465600	36465698	ENSG00000112078.13|KCTD20|pc|chr6:36465600:36465698:+	0	+
#Deleted in new
chr6	36677787	36677933	ENSG00000124762.13|CDKN1A|pc|chr6:36677787:36677933:+	0	+
#Deleted in new
chr6	36677901	36677933	ENSG00000124762.13|CDKN1A|pc|chr6:36677901:36677933:+	0	+
#Partially deleted in new
chr6	36732002	36733183	ENSG00000255587.7|RAB44|pc|chr6:36732002:36733183:+	0	+
#Partially deleted in new
chr6	36752579	36752620	ENSG00000124772.11|CPNE5|pc|chr6:36752579:36752620:-	0	-
#Deleted in new
chr6	36858564	36858635	ENSG00000137168.7|PPIL1|pc|chr6:36858564:36858635:-	0	-
#Deleted in new
chr6	36879007	36879132	ENSG00000198663.16|C6orf89|pc|chr6:36879007:36879132:+	0	+
#Deleted in new
chr6	36883187	36883352	ENSG00000198663.16|C6orf89|pc|chr6:36883187:36883352:+	0	+
#Deleted in new
chr6	36894503	36894603	ENSG00000198663.16|C6orf89|pc|chr6:36894503:36894603:+	0	+
#Deleted in new
chr6	36940070	36940363	ENSG00000232598.2|AL122034.1|lncRNA|chr6:36940070:36940363:-	0	-
#Deleted in new
chr6	36944471	36944675	ENSG00000232598.2|AL122034.1|lncRNA|chr6:36944471:36944675:-	0	-
#Deleted in new
chr6	36948262	36948404	ENSG00000164530.13|PI16|pc|chr6:36948262:36948404:+	0	+
#Partially deleted in new
chr6	37008833	37010031	ENSG00000146192.14|FGD2|pc|chr6:37008833:37010031:+	0	+
#Split in new
chr6	37022238	37025938	ENSG00000146192.14|FGD2|pc|chr6:37022238:37025938:+	0	+
#Deleted in new
chr6	37215197	37215282	ENSG00000172738.11|TMEM217|pc|chr6:37215197:37215282:-	0	-
#Deleted in new
chr6	37217641	37218011	ENSG00000172738.11|TMEM217|pc|chr6:37217641:37218011:-	0	-
#Partially deleted in new
chr6	37218425	37218489	ENSG00000172738.11|TMEM217|pc|chr6:37218425:37218489:-	0	-
#Deleted in new
chr6	37359182	37359342	ENSG00000112130.16|RNF8|pc|chr6:37359182:37359342:+	0	+
#Deleted in new
chr6	37361337	37361558	ENSG00000112130.16|RNF8|pc|chr6:37361337:37361558:+	0	+
#Partially deleted in new
chr6	37390741	37394738	ENSG00000112130.16|RNF8|pc|chr6:37390741:37394738:+	0	+
#Partially deleted in new
chr6	37436308	37436382	ENSG00000137200.12|CMTR1|pc|chr6:37436308:37436382:+	0	+
#Deleted in new
chr6	37545144	37545413	ENSG00000227920.2|AL353597.1|lncRNA|chr6:37545144:37545413:+	0	+
#Deleted in new
chr6	37546154	37546245	ENSG00000227920.2|AL353597.1|lncRNA|chr6:37546154:37546245:+	0	+
#Deleted in new
chr6	37549045	37549215	ENSG00000227920.2|AL353597.1|lncRNA|chr6:37549045:37549215:+	0	+
#Partially deleted in new
chr6	37550567	37550860	ENSG00000227920.2|AL353597.1|lncRNA|chr6:37550567:37550860:+	0	+
#Partially deleted in new
chr6	37638536	37639824	ENSG00000112139.14|MDGA1|pc|chr6:37638536:37639824:-	0	-
#Deleted in new
chr6	37643277	37643363	ENSG00000112139.14|MDGA1|pc|chr6:37643277:37643363:-	0	-
#Deleted in new
chr6	38062407	38062660	ENSG00000156639.11|ZFAND3|pc|chr6:38062407:38062660:+	0	+
#Deleted in new
chr6	38088330	38088373	ENSG00000156639.11|ZFAND3|pc|chr6:38088330:38088373:+	0	+
#Deleted in new
chr6	38142258	38142331	ENSG00000156639.11|ZFAND3|pc|chr6:38142258:38142331:+	0	+
#Deleted in new
chr6	38142996	38143204	ENSG00000156639.11|ZFAND3|pc|chr6:38142996:38143204:+	0	+
#Partially deleted in new
chr6	38168450	38175182	ENSG00000183826.16|BTBD9|pc|chr6:38168450:38175182:-	0	-
#Deleted in new
chr6	38402816	38402903	ENSG00000183826.16|BTBD9|pc|chr6:38402816:38402903:-	0	-
#Deleted in new
chr6	3849387	3849486	ENSG00000145945.5|FAM50B|pc|chr6:3849387:3849486:+	0	+
#Deleted in new
chr6	38504493	38504562	ENSG00000183826.16|BTBD9|pc|chr6:38504493:38504562:-	0	-
#Deleted in new
chr6	3855469	3855737	ENSG00000238158.6|AL391422.2|lncRNA|chr6:3855469:3855737:+	0	+
#Deleted in new
chr6	38571709	38571794	ENSG00000183826.16|BTBD9|pc|chr6:38571709:38571794:-	0	-
#Deleted in new
chr6	38595769	38595988	ENSG00000183826.16|BTBD9|pc|chr6:38595769:38595988:-	0	-
#Partially deleted in new
chr6	38595769	38596067	ENSG00000183826.16|BTBD9|pc|chr6:38595769:38596067:-	0	-
#Deleted in new
chr6	38714050	38714298	ENSG00000236355.2|AL391415.1|lncRNA|chr6:38714050:38714298:-	0	-
#Deleted in new
chr6	3893125	3893251	ENSG00000233068.2|AL590004.3|lncRNA|chr6:3893125:3893251:+	0	+
#Partially deleted in new
chr6	38932876	38932917	ENSG00000231150.5|AL034345.2|lncRNA|chr6:38932876:38932917:-	0	-
#Deleted in new
chr6	3893479	3893542	ENSG00000233068.2|AL590004.3|lncRNA|chr6:3893479:3893542:+	0	+
#Deleted in new
chr6	38953047	38953099	ENSG00000231150.5|AL034345.2|lncRNA|chr6:38953047:38953099:-	0	-
#Duplicated in new
chr6	39317785	39317952	ENSG00000095981.10|KCNK16|pc|chr6:39317785:39317952:-	0	-
#Deleted in new
chr6	39718421	39718577	ENSG00000164627.17|KIF6|pc|chr6:39718421:39718577:-	0	-
#Deleted in new
chr6	3982672	3984130	ENSG00000279926.1|AL138831.3|lncRNA|chr6:3982672:3984130:+	0	+
#Deleted in new
chr6	39848565	39848936	ENSG00000146122.16|DAAM2|pc|chr6:39848565:39848936:+	0	+
#Partially deleted in new
chr6	39860927	39862819	ENSG00000146122.16|DAAM2|pc|chr6:39860927:39862819:+	0	+
#Deleted in new
chr6	39897339	39897400	ENSG00000235033.7|AL590999.1|lncRNA|chr6:39897339:39897400:-	0	-
#Partially deleted in new
chr6	39898960	39899012	ENSG00000235033.7|AL590999.1|lncRNA|chr6:39898960:39899012:-	0	-
#Deleted in new
chr6	39899577	39899875	ENSG00000124615.17|MOCS1|pc|chr6:39899577:39899875:-	0	-
#Deleted in new
chr6	39927542	39927578	ENSG00000124615.17|MOCS1|pc|chr6:39927542:39927578:-	0	-
#Deleted in new
chr6	40271565	40271960	ENSG00000227131.1|AL139275.2|lncRNA|chr6:40271565:40271960:-	0	-
#Partially deleted in new
chr6	40276005	40276126	ENSG00000227131.1|AL139275.2|lncRNA|chr6:40276005:40276126:-	0	-
#Deleted in new
chr6	40358743	40359481	ENSG00000226070.1|AL139275.1|lncRNA|chr6:40358743:40359481:-	0	-
#Deleted in new
chr6	40369388	40369474	ENSG00000226070.1|AL139275.1|lncRNA|chr6:40369388:40369474:-	0	-
#Deleted in new
chr6	40501630	40501765	ENSG00000236075.1|AL359475.1|lncRNA|chr6:40501630:40501765:-	0	-
#Deleted in new
chr6	40502236	40502393	ENSG00000236075.1|AL359475.1|lncRNA|chr6:40502236:40502393:-	0	-
#Deleted in new
chr6	4050428	4050518	ENSG00000145975.14|FAM217A|pc|chr6:4050428:4050518:-	0	-
#Deleted in new
chr6	4050460	4050551	ENSG00000145975.14|FAM217A|pc|chr6:4050460:4050551:-	0	-
#Deleted in new
chr6	40713410	40713463	ENSG00000237947.1|AL583854.1|lncRNA|chr6:40713410:40713463:-	0	-
#Deleted in new
chr6	40714295	40714398	ENSG00000237947.1|AL583854.1|lncRNA|chr6:40714295:40714398:-	0	-
#Deleted in new
chr6	40714906	40715363	ENSG00000237947.1|AL583854.1|lncRNA|chr6:40714906:40715363:-	0	-
#Deleted in new
chr6	4079208	4079680	ENSG00000185689.15|C6orf201|pc|chr6:4079208:4079680:+	0	+
#Deleted in new
chr6	4079216	4079680	ENSG00000185689.15|C6orf201|pc|chr6:4079216:4079680:+	0	+
#Deleted in new
chr6	4101310	4101361	ENSG00000185689.15|C6orf201|pc|chr6:4101310:4101361:+	0	+
#Deleted in new
chr6	41052264	41052363	ENSG00000124596.16|OARD1|pc|chr6:41052264:41052363:-	0	-
#Partially deleted in new
chr6	41075266	41075349	ENSG00000124596.16|OARD1|pc|chr6:41075266:41075349:-	0	-
#Deleted in new
chr6	41232362	41232504	ENSG00000188056.11|TREML4|pc|chr6:41232362:41232504:+	0	+
#Deleted in new
chr6	41237054	41238382	ENSG00000188056.11|TREML4|pc|chr6:41237054:41238382:+	0	+
#Deleted in new
chr6	41237054	41238882	ENSG00000188056.11|TREML4|pc|chr6:41237054:41238882:+	0	+
#Deleted in new
chr6	41237059	41237100	ENSG00000188056.11|TREML4|pc|chr6:41237059:41237100:+	0	+
#Deleted in new
chr6	41267925	41268088	ENSG00000124731.12|TREM1|pc|chr6:41267925:41268088:-	0	-
#Split in new
chr6	41279538	41281153	ENSG00000124731.12|TREM1|pc|chr6:41279538:41281153:-	0	-
#Deleted in new
chr6	41342917	41343024	ENSG00000096264.13|NCR2|pc|chr6:41342917:41343024:+	0	+
#Deleted in new
chr6	41350677	41350858	ENSG00000096264.13|NCR2|pc|chr6:41350677:41350858:+	0	+
#Deleted in new
chr6	41350677	41350864	ENSG00000096264.13|NCR2|pc|chr6:41350677:41350864:+	0	+
#Deleted in new
chr6	41350677	41350887	ENSG00000096264.13|NCR2|pc|chr6:41350677:41350887:+	0	+
#Deleted in new
chr6	4136071	4136248	ENSG00000234817.2|AL136309.2|lncRNA|chr6:4136071:4136248:+	0	+
#Deleted in new
chr6	4137360	4137402	ENSG00000234817.2|AL136309.2|lncRNA|chr6:4137360:4137402:+	0	+
#Deleted in new
chr6	4145536	4146053	ENSG00000254821.1|AL136309.4|lncRNA|chr6:4145536:4146053:+	0	+
#Deleted in new
chr6	41776418	41776622	ENSG00000137218.10|FRS3|pc|chr6:41776418:41776622:-	0	-
#Deleted in new
chr6	41791409	41791477	ENSG00000268745.1|AL365205.2|lncRNA|chr6:41791409:41791477:+	0	+
#Deleted in new
chr6	4186623	4186769	ENSG00000237716.1|AL136309.3|lncRNA|chr6:4186623:4186769:-	0	-
#Deleted in new
chr6	41868621	41868906	ENSG00000227516.1|AL160163.1|lncRNA|chr6:41868621:41868906:+	0	+
#Deleted in new
chr6	41869613	41869731	ENSG00000227516.1|AL160163.1|lncRNA|chr6:41869613:41869731:+	0	+
#Deleted in new
chr6	41874082	41874239	ENSG00000164663.14|USP49|pc|chr6:41874082:41874239:-	0	-
#Deleted in new
chr6	4187989	4188109	ENSG00000237716.1|AL136309.3|lncRNA|chr6:4187989:4188109:-	0	-
#Deleted in new
chr6	41891793	41891875	ENSG00000164663.14|USP49|pc|chr6:41891793:41891875:-	0	-
#Deleted in new
chr6	41912984	41913100	ENSG00000124641.15|MED20|pc|chr6:41912984:41913100:-	0	-
#Deleted in new
chr6	41917513	41917614	ENSG00000124641.15|MED20|pc|chr6:41917513:41917614:-	0	-
#Deleted in new
chr6	41917794	41917916	ENSG00000124641.15|MED20|pc|chr6:41917794:41917916:-	0	-
#Partially deleted in new
chr6	41937712	41937784	ENSG00000112576.12|CCND3|pc|chr6:41937712:41937784:-	0	-
#Partially deleted in new
chr6	42049650	42050357	ENSG00000112576.12|CCND3|pc|chr6:42049650:42050357:-	0	-
#Deleted in new
chr6	42063185	42063759	ENSG00000137413.15|TAF8|pc|chr6:42063185:42063759:+	0	+
#Deleted in new
chr6	42071346	42071468	ENSG00000137413.15|TAF8|pc|chr6:42071346:42071468:+	0	+
#Split in new
chr6	42077532	42083274	ENSG00000137413.15|TAF8|pc|chr6:42077532:42083274:+	0	+
#Deleted in new
chr6	42086718	42087071	ENSG00000137413.15|TAF8|pc|chr6:42086718:42087071:+	0	+
#Deleted in new
chr6	42086718	42087461	ENSG00000137413.15|TAF8|pc|chr6:42086718:42087461:+	0	+
#Deleted in new
chr6	42092232	42094259	ENSG00000261068.2|AL512274.1|lncRNA|chr6:42092232:42094259:-	0	-
#Deleted in new
chr6	42126376	42126843	ENSG00000188112.8|C6orf132|pc|chr6:42126376:42126843:-	0	-
#Deleted in new
chr6	42178611	42178635	ENSG00000048545.13|GUCA1A|pc|chr6:42178611:42178635:+	0	+
#Deleted in new
chr6	42619467	42620351	ENSG00000024048.10|UBR2|pc|chr6:42619467:42620351:+	0	+
#Deleted in new
chr6	42810305	42810401	ENSG00000112624.12|BICRAL|pc|chr6:42810305:42810401:+	0	+
#Partially deleted in new
chr6	42880860	42883008	ENSG00000146223.14|RPL7L1|pc|chr6:42880860:42883008:+	0	+
#Partially deleted in new
chr6	42886255	42887010	ENSG00000146223.14|RPL7L1|pc|chr6:42886255:42887010:+	0	+
#Deleted in new
chr6	42922217	42922260	ENSG00000171611.9|PTCRA|pc|chr6:42922217:42922260:+	0	+
#Deleted in new
chr6	42940363	42940606	ENSG00000231113.2|AL035587.1|lncRNA|chr6:42940363:42940606:+	0	+
#Deleted in new
chr6	42941509	42941615	ENSG00000231113.2|AL035587.1|lncRNA|chr6:42941509:42941615:+	0	+
#Deleted in new
chr6	42943739	42943970	ENSG00000231113.2|AL035587.1|lncRNA|chr6:42943739:42943970:+	0	+
#Deleted in new
chr6	42943797	42943970	ENSG00000231113.2|AL035587.1|lncRNA|chr6:42943797:42943970:+	0	+
#Deleted in new
chr6	42947607	42948360	ENSG00000231113.2|AL035587.1|lncRNA|chr6:42947607:42948360:+	0	+
#Duplicated in new
chr6	43008278	43008475	ENSG00000112640.14|PPP2R5D|pc|chr6:43008278:43008475:+	0	+
#Deleted in new
chr6	43033151	43034156	ENSG00000124541.6|RRP36|pc|chr6:43033151:43034156:+	0	+
#Deleted in new
chr6	43033852	43033971	ENSG00000124541.6|RRP36|pc|chr6:43033852:43033971:+	0	+
#Deleted in new
chr6	43033896	43034405	ENSG00000272223.1|AL136304.1|lncRNA|chr6:43033896:43034405:-	0	-
#Partially deleted in new
chr6	43073222	43073647	ENSG00000137171.14|KLC4|pc|chr6:43073222:43073647:+	0	+
#Deleted in new
chr6	43295693	43295828	ENSG00000137204.14|SLC22A7|pc|chr6:43295693:43295828:+	0	+
#Deleted in new
chr6	43295790	43295828	ENSG00000137204.14|SLC22A7|pc|chr6:43295790:43295828:+	0	+
#Deleted in new
chr6	43311132	43311256	ENSG00000171467.15|ZNF318|pc|chr6:43311132:43311256:-	0	-
#Deleted in new
chr6	43318301	43318469	ENSG00000171467.15|ZNF318|pc|chr6:43318301:43318469:-	0	-
#Deleted in new
chr6	43430747	43430866	ENSG00000124574.14|ABCC10|pc|chr6:43430747:43430866:+	0	+
#Partially deleted in new
chr6	43503622	43504667	ENSG00000137221.14|TJAP1|pc|chr6:43503622:43504667:+	0	+
#Deleted in new
chr6	43515192	43515306	ENSG00000137207.11|YIPF3|pc|chr6:43515192:43515306:-	0	-
#Partially deleted in new
chr6	43527185	43527731	ENSG00000124571.17|XPO5|pc|chr6:43527185:43527731:-	0	-
#Deleted in new
chr6	43529248	43529585	ENSG00000171453.17|POLR1C|pc|chr6:43529248:43529585:+	0	+
#Partially deleted in new
chr6	43533352	43534007	ENSG00000124571.17|XPO5|pc|chr6:43533352:43534007:-	0	-
#Deleted in new
chr6	43558919	43559062	ENSG00000124571.17|XPO5|pc|chr6:43558919:43559062:-	0	-
#Deleted in new
chr6	43588229	43588746	ENSG00000203362.2|AL355802.1|lncRNA|chr6:43588229:43588746:-	0	-
#Deleted in new
chr6	43590889	43591362	ENSG00000203362.2|AL355802.1|lncRNA|chr6:43590889:43591362:-	0	-
#Partially deleted in new
chr6	43622950	43623612	ENSG00000172432.18|GTPBP2|pc|chr6:43622950:43623612:-	0	-
#Deleted in new
chr6	43633193	43633315	ENSG00000124688.13|MAD2L1BP|pc|chr6:43633193:43633315:+	0	+
#Deleted in new
chr6	43850095	43850204	ENSG00000283215.1|LINC02537|lncRNA|chr6:43850095:43850204:-	0	-
#Deleted in new
chr6	43999217	43999508	ENSG00000237686.6|AL109615.3|lncRNA|chr6:43999217:43999508:-	0	-
#Deleted in new
chr6	44161789	44161924	ENSG00000137225.12|CAPN11|pc|chr6:44161789:44161924:+	0	+
#Deleted in new
chr6	44166757	44166829	ENSG00000137225.12|CAPN11|pc|chr6:44166757:44166829:+	0	+
#Deleted in new
chr6	44168941	44169031	ENSG00000137225.12|CAPN11|pc|chr6:44168941:44169031:+	0	+
#Duplicated in new
chr6	44377034	44378957	ENSG00000272442.2|AL353588.1|pc|chr6:44377034:44378957:+	0	+
#Deleted in new
chr6	44525258	44525400	ENSG00000237530.1|AL136140.1|lncRNA|chr6:44525258:44525400:+	0	+
#Deleted in new
chr6	44526202	44526332	ENSG00000237530.1|AL136140.1|lncRNA|chr6:44526202:44526332:+	0	+
#Deleted in new
chr6	44526553	44526754	ENSG00000237530.1|AL136140.1|lncRNA|chr6:44526553:44526754:+	0	+
#Deleted in new
chr6	44955224	44955510	ENSG00000196284.15|SUPT3H|pc|chr6:44955224:44955510:-	0	-
#Partially deleted in new
chr6	45250954	45251136	ENSG00000196284.15|SUPT3H|pc|chr6:45250954:45251136:-	0	-
#Deleted in new
chr6	45361572	45361688	ENSG00000124813.20|RUNX2|pc|chr6:45361572:45361688:+	0	+
#Deleted in new
chr6	45371888	45372055	ENSG00000124813.20|RUNX2|pc|chr6:45371888:45372055:+	0	+
#Deleted in new
chr6	45913777	45913812	ENSG00000112782.15|CLIC5|pc|chr6:45913777:45913812:-	0	-
#Deleted in new
chr6	45932693	45932798	ENSG00000112782.15|CLIC5|pc|chr6:45932693:45932798:-	0	-
#Deleted in new
chr6	45937404	45937464	ENSG00000112782.15|CLIC5|pc|chr6:45937404:45937464:-	0	-
#Deleted in new
chr6	45937404	45937597	ENSG00000112782.15|CLIC5|pc|chr6:45937404:45937597:-	0	-
#Deleted in new
chr6	4599286	4599615	ENSG00000260673.1|AL034376.2|lncRNA|chr6:4599286:4599615:-	0	-
#Deleted in new
chr6	4602176	4602420	ENSG00000260673.1|AL034376.2|lncRNA|chr6:4602176:4602420:-	0	-
#Deleted in new
chr6	46097092	46097346	ENSG00000231769.2|AL035701.1|lncRNA|chr6:46097092:46097346:-	0	-
#Deleted in new
chr6	46102539	46102659	ENSG00000231769.2|AL035701.1|lncRNA|chr6:46102539:46102659:-	0	-
#Deleted in new
chr6	46102567	46102659	ENSG00000231769.2|AL035701.1|lncRNA|chr6:46102567:46102659:-	0	-
#Deleted in new
chr6	46122947	46123109	ENSG00000231769.2|AL035701.1|lncRNA|chr6:46122947:46123109:-	0	-
#Deleted in new
chr6	46129503	46129591	ENSG00000231769.2|AL035701.1|lncRNA|chr6:46129503:46129591:-	0	-
#Deleted in new
chr6	46530216	46530391	ENSG00000236466.1|AL359633.2|lncRNA|chr6:46530216:46530391:+	0	+
#Deleted in new
chr6	46532387	46532758	ENSG00000236466.1|AL359633.2|lncRNA|chr6:46532387:46532758:+	0	+
#Deleted in new
chr6	46586264	46586492	ENSG00000146233.7|CYP39A1|pc|chr6:46586264:46586492:-	0	-
#Deleted in new
chr6	46760942	46761158	ENSG00000236164.1|AL161618.1|lncRNA|chr6:46760942:46761158:-	0	-
#Deleted in new
chr6	46863201	46863304	ENSG00000069122.18|ADGRF5|pc|chr6:46863201:46863304:-	0	-
#Deleted in new
chr6	46886598	46887045	ENSG00000069122.18|ADGRF5|pc|chr6:46886598:46887045:-	0	-
#Partially deleted in new
chr6	46887941	46888021	ENSG00000069122.18|ADGRF5|pc|chr6:46887941:46888021:-	0	-
#Deleted in new
chr6	46905258	46905449	ENSG00000225730.1|AL096772.1|lncRNA|chr6:46905258:46905449:+	0	+
#Partially deleted in new
chr6	46997702	47000295	ENSG00000153292.15|ADGRF1|pc|chr6:46997702:47000295:-	0	-
#Deleted in new
chr6	47018479	47018499	ENSG00000153292.15|ADGRF1|pc|chr6:47018479:47018499:-	0	-
#Deleted in new
chr6	47018479	47018582	ENSG00000153292.15|ADGRF1|pc|chr6:47018479:47018582:-	0	-
#Partially deleted in new
chr6	47020053	47020497	ENSG00000153292.15|ADGRF1|pc|chr6:47020053:47020497:-	0	-
#Deleted in new
chr6	4734761	4734844	ENSG00000153046.17|CDYL|pc|chr6:4734761:4734844:+	0	+
#Deleted in new
chr6	47663400	47663577	ENSG00000164393.8|ADGRF2|pc|chr6:47663400:47663577:+	0	+
#Deleted in new
chr6	47729826	47729945	ENSG00000226594.1|AL356421.2|lncRNA|chr6:47729826:47729945:-	0	-
#Partially deleted in new
chr6	47899608	47901935	ENSG00000244694.7|PTCHD4|pc|chr6:47899608:47901935:-	0	-
#Deleted in new
chr6	4836097	4836308	ENSG00000153046.17|CDYL|pc|chr6:4836097:4836308:+	0	+
#Deleted in new
chr6	4928694	4928728	ENSG00000153046.17|CDYL|pc|chr6:4928694:4928728:+	0	+
#Deleted in new
chr6	49552352	49552570	ENSG00000197261.11|C6orf141|pc|chr6:49552352:49552570:+	0	+
#Deleted in new
chr6	49552357	49552570	ENSG00000197261.11|C6orf141|pc|chr6:49552357:49552570:+	0	+
#Deleted in new
chr6	49552467	49552570	ENSG00000197261.11|C6orf141|pc|chr6:49552467:49552570:+	0	+
#Partially deleted in new
chr6	49552976	49553207	ENSG00000197261.11|C6orf141|pc|chr6:49552976:49553207:+	0	+
#Partially deleted in new
chr6	49560533	49560934	ENSG00000197261.11|C6orf141|pc|chr6:49560533:49560934:+	0	+
#Deleted in new
chr6	49561703	49561907	ENSG00000197261.11|C6orf141|pc|chr6:49561703:49561907:+	0	+
#Deleted in new
chr6	49721930	49724007	ENSG00000279127.1|AL121950.1|lncRNA|chr6:49721930:49724007:+	0	+
#Deleted in new
chr6	49817429	49817491	ENSG00000235122.3|AL121974.1|lncRNA|chr6:49817429:49817491:+	0	+
#Deleted in new
chr6	49819122	49819322	ENSG00000235122.3|AL121974.1|lncRNA|chr6:49819122:49819322:+	0	+
#Deleted in new
chr6	49820327	49820442	ENSG00000235122.3|AL121974.1|lncRNA|chr6:49820327:49820442:+	0	+
#Deleted in new
chr6	49823711	49823830	ENSG00000226707.1|AL359458.1|lncRNA|chr6:49823711:49823830:-	0	-
#Deleted in new
chr6	49823935	49824043	ENSG00000226707.1|AL359458.1|lncRNA|chr6:49823935:49824043:-	0	-
#Deleted in new
chr6	49824609	49824782	ENSG00000226707.1|AL359458.1|lncRNA|chr6:49824609:49824782:-	0	-
#Deleted in new
chr6	49877008	49877096	ENSG00000124812.14|CRISP1|pc|chr6:49877008:49877096:-	0	-
#Deleted in new
chr6	49950090	49950265	ENSG00000214643.6|DEFB133|pc|chr6:49950090:49950265:-	0	-
#Deleted in new
chr6	49964050	49964105	ENSG00000177684.3|DEFB114|pc|chr6:49964050:49964105:-	0	-
#Partially deleted in new
chr6	5003585	5003658	ENSG00000124787.13|RPP40|pc|chr6:5003585:5003658:-	0	-
#Deleted in new
chr6	50048536	50048651	ENSG00000180872.4|DEFB112|pc|chr6:50048536:50048651:-	0	-
#Deleted in new
chr6	50103918	50104000	ENSG00000226733.2|AL138826.1|pc|chr6:50103918:50104000:+	0	+
#Deleted in new
chr6	50140541	50140631	ENSG00000226733.2|AL138826.1|pc|chr6:50140541:50140631:+	0	+
#Deleted in new
chr6	50154182	50154263	ENSG00000226733.2|AL138826.1|pc|chr6:50154182:50154263:+	0	+
#Deleted in new
chr6	50180861	50181007	ENSG00000226733.2|AL138826.1|pc|chr6:50180861:50181007:+	0	+
#Deleted in new
chr6	5029971	5030195	ENSG00000272142.1|AL359643.3|lncRNA|chr6:5029971:5030195:+	0	+
#Deleted in new
chr6	5030030	5030195	ENSG00000272142.1|AL359643.3|lncRNA|chr6:5030030:5030195:+	0	+
#Deleted in new
chr6	5030075	5030195	ENSG00000272142.1|AL359643.3|lncRNA|chr6:5030075:5030195:+	0	+
#Deleted in new
chr6	5030804	5031125	ENSG00000272142.1|AL359643.3|lncRNA|chr6:5030804:5031125:+	0	+
#Deleted in new
chr6	5031755	5034682	ENSG00000271978.1|AL359643.2|lncRNA|chr6:5031755:5034682:-	0	-
#Deleted in new
chr6	5042505	5042940	ENSG00000272142.1|AL359643.3|lncRNA|chr6:5042505:5042940:+	0	+
#Deleted in new
chr6	5042587	5043449	ENSG00000272142.1|AL359643.3|lncRNA|chr6:5042587:5043449:+	0	+
#Deleted in new
chr6	5054077	5054423	ENSG00000271978.1|AL359643.2|lncRNA|chr6:5054077:5054423:-	0	-
#Partially deleted in new
chr6	5102592	5109491	ENSG00000214113.10|LYRM4|pc|chr6:5102592:5109491:-	0	-
#Deleted in new
chr6	5103628	5103950	ENSG00000214113.10|LYRM4|pc|chr6:5103628:5103950:-	0	-
#Deleted in new
chr6	5113070	5113417	ENSG00000214113.10|LYRM4|pc|chr6:5113070:5113417:-	0	-
#Deleted in new
chr6	5132717	5132894	ENSG00000214113.10|LYRM4|pc|chr6:5132717:5132894:-	0	-
#Deleted in new
chr6	51599722	51600451	ENSG00000228689.7|AL355997.1|lncRNA|chr6:51599722:51600451:+	0	+
#Deleted in new
chr6	51605263	51605344	ENSG00000228689.7|AL355997.1|lncRNA|chr6:51605263:51605344:+	0	+
#Deleted in new
chr6	51605264	51605344	ENSG00000228689.7|AL355997.1|lncRNA|chr6:51605264:51605344:+	0	+
#Deleted in new
chr6	5186599	5186980	ENSG00000214113.10|LYRM4|pc|chr6:5186599:5186980:-	0	-
#Deleted in new
chr6	5236283	5236461	ENSG00000214113.10|LYRM4|pc|chr6:5236283:5236461:-	0	-
#Deleted in new
chr6	52413013	52413165	ENSG00000096093.15|EFHC1|pc|chr6:52413013:52413165:+	0	+
#Deleted in new
chr6	524170	524312	ENSG00000230433.1|AL031770.1|lncRNA|chr6:524170:524312:+	0	+
#Deleted in new
chr6	52423808	52423814	ENSG00000096093.15|EFHC1|pc|chr6:52423808:52423814:+	0	+
#Deleted in new
chr6	52428209	52428243	ENSG00000096093.15|EFHC1|pc|chr6:52428209:52428243:+	0	+
#Deleted in new
chr6	52429968	52430063	ENSG00000096093.15|EFHC1|pc|chr6:52429968:52430063:+	0	+
#Deleted in new
chr6	52429968	52430126	ENSG00000096093.15|EFHC1|pc|chr6:52429968:52430126:+	0	+
#Deleted in new
chr6	52429968	52430131	ENSG00000096093.15|EFHC1|pc|chr6:52429968:52430131:+	0	+
#Deleted in new
chr6	52430227	52430374	ENSG00000096093.15|EFHC1|pc|chr6:52430227:52430374:+	0	+
#Deleted in new
chr6	52437561	52437678	ENSG00000096093.15|EFHC1|pc|chr6:52437561:52437678:+	0	+
#Partially deleted in new
chr6	52468393	52469473	ENSG00000096093.15|EFHC1|pc|chr6:52468393:52469473:+	0	+
#Deleted in new
chr6	52481545	52481662	ENSG00000096093.15|EFHC1|pc|chr6:52481545:52481662:+	0	+
#Deleted in new
chr6	52481545	52482319	ENSG00000096093.15|EFHC1|pc|chr6:52481545:52482319:+	0	+
#Deleted in new
chr6	52481545	52482336	ENSG00000096093.15|EFHC1|pc|chr6:52481545:52482336:+	0	+
#Deleted in new
chr6	52481545	52482587	ENSG00000096093.15|EFHC1|pc|chr6:52481545:52482587:+	0	+
#Deleted in new
chr6	52482783	52484372	ENSG00000096093.15|EFHC1|pc|chr6:52482783:52484372:+	0	+
#Deleted in new
chr6	52482783	52484604	ENSG00000096093.15|EFHC1|pc|chr6:52482783:52484604:+	0	+
#Deleted in new
chr6	52483616	52483641	ENSG00000096093.15|EFHC1|pc|chr6:52483616:52483641:+	0	+
#Deleted in new
chr6	524872	525581	ENSG00000230433.1|AL031770.1|lncRNA|chr6:524872:525581:+	0	+
#Partially deleted in new
chr6	52488556	52488675	ENSG00000096093.15|EFHC1|pc|chr6:52488556:52488675:+	0	+
#Partially deleted in new
chr6	52492269	52493402	ENSG00000096093.15|EFHC1|pc|chr6:52492269:52493402:+	0	+
#Partially deleted in new
chr6	52492269	52495783	ENSG00000096093.15|EFHC1|pc|chr6:52492269:52495783:+	0	+
#Partially deleted in new
chr6	52495608	52495768	ENSG00000096093.15|EFHC1|pc|chr6:52495608:52495768:+	0	+
#Deleted in new
chr6	52522883	52523094	ENSG00000096093.15|EFHC1|pc|chr6:52522883:52523094:+	0	+
#Partially deleted in new
chr6	52522883	52524741	ENSG00000096093.15|EFHC1|pc|chr6:52522883:52524741:+	0	+
#Deleted in new
chr6	52522988	52523025	ENSG00000096093.15|EFHC1|pc|chr6:52522988:52523025:+	0	+
#Deleted in new
chr6	52578501	52578594	ENSG00000225791.6|TRAM2-AS1|lncRNA|chr6:52578501:52578594:+	0	+
#Partially deleted in new
chr6	52582862	52583993	ENSG00000225791.6|TRAM2-AS1|lncRNA|chr6:52582862:52583993:+	0	+
#Deleted in new
chr6	5272425	5272489	ENSG00000145982.11|FARS2|pc|chr6:5272425:5272489:+	0	+
#Duplicated in new
chr6	52750088	52750699	ENSG00000244067.2|GSTA2|pc|chr6:52750088:52750699:-	0	-
#Partially deleted in new
chr6	52987356	52988002	ENSG00000170899.10|GSTA4|pc|chr6:52987356:52988002:-	0	-
#Deleted in new
chr6	52995070	52995170	ENSG00000170899.10|GSTA4|pc|chr6:52995070:52995170:-	0	-
#Deleted in new
chr6	52995248	52995304	ENSG00000170899.10|GSTA4|pc|chr6:52995248:52995304:-	0	-
#Deleted in new
chr6	52995248	52995378	ENSG00000170899.10|GSTA4|pc|chr6:52995248:52995378:-	0	-
#Deleted in new
chr6	53051990	53052033	ENSG00000112146.16|FBXO9|pc|chr6:53051990:53052033:+	0	+
#Partially deleted in new
chr6	53097721	53100873	ENSG00000112146.16|FBXO9|pc|chr6:53097721:53100873:+	0	+
#Deleted in new
chr6	53125643	53126146	ENSG00000261745.2|AL512347.1|lncRNA|chr6:53125643:53126146:-	0	-
#Split in new
chr6	53350157	53350705	ENSG00000271367.1|AL034374.2|lncRNA|chr6:53350157:53350705:+	0	+
#Deleted in new
chr6	53503184	53503328	ENSG00000249379.1|AL033397.2|lncRNA|chr6:53503184:53503328:+	0	+
#Partially deleted in new
chr6	53561288	53564420	ENSG00000231683.6|AL033397.1|lncRNA|chr6:53561288:53564420:-	0	-
#Partially deleted in new
chr6	53561905	53564420	ENSG00000231683.6|AL033397.1|lncRNA|chr6:53561905:53564420:-	0	-
#Partially deleted in new
chr6	53561919	53564420	ENSG00000231683.6|AL033397.1|lncRNA|chr6:53561919:53564420:-	0	-
#Partially deleted in new
chr6	53564057	53564420	ENSG00000231683.6|AL033397.1|lncRNA|chr6:53564057:53564420:-	0	-
#Partially deleted in new
chr6	53564116	53564420	ENSG00000001084.10|GCLC|pc|chr6:53564116:53564420:-	0	-
#Deleted in new
chr6	53573199	53573265	ENSG00000231683.6|AL033397.1|lncRNA|chr6:53573199:53573265:-	0	-
#Deleted in new
chr6	53573199	53573275	ENSG00000231683.6|AL033397.1|lncRNA|chr6:53573199:53573275:-	0	-
#Deleted in new
chr6	53583298	53583333	ENSG00000231683.6|AL033397.1|lncRNA|chr6:53583298:53583333:-	0	-
#Deleted in new
chr6	53616885	53616970	ENSG00000001084.10|GCLC|pc|chr6:53616885:53616970:-	0	-
#Deleted in new
chr6	53616885	53616994	ENSG00000231683.6|AL033397.1|lncRNA|chr6:53616885:53616994:-	0	-
#Deleted in new
chr6	53616885	53617007	ENSG00000231683.6|AL033397.1|lncRNA|chr6:53616885:53617007:-	0	-
#Deleted in new
chr6	53616885	53617009	ENSG00000231683.6|AL033397.1|lncRNA|chr6:53616885:53617009:-	0	-
#Deleted in new
chr6	53616885	53617171	ENSG00000231683.6|AL033397.1|lncRNA|chr6:53616885:53617171:-	0	-
#Partially deleted in new
chr6	53628574	53628691	ENSG00000235899.1|LINC01564|lncRNA|chr6:53628574:53628691:+	0	+
#Deleted in new
chr6	53740748	53741338	ENSG00000227885.1|AL590652.1|lncRNA|chr6:53740748:53741338:-	0	-
#Deleted in new
chr6	53883950	53884145	ENSG00000137269.14|LRRC1|pc|chr6:53883950:53884145:+	0	+
#Partially deleted in new
chr6	53978548	53978717	ENSG00000235050.6|MLIP-AS1|lncRNA|chr6:53978548:53978717:-	0	-
#Deleted in new
chr6	53994789	53994864	ENSG00000236740.6|AL033384.1|lncRNA|chr6:53994789:53994864:+	0	+
#Deleted in new
chr6	53994789	53995010	ENSG00000236740.6|AL033384.1|lncRNA|chr6:53994789:53995010:+	0	+
#Deleted in new
chr6	54002613	54002719	ENSG00000236996.1|MLIP-IT1|lncRNA|chr6:54002613:54002719:+	0	+
#Deleted in new
chr6	54006970	54007152	ENSG00000236996.1|MLIP-IT1|lncRNA|chr6:54006970:54007152:+	0	+
#Deleted in new
chr6	54032376	54032436	ENSG00000235050.6|MLIP-AS1|lncRNA|chr6:54032376:54032436:-	0	-
#Deleted in new
chr6	54041040	54041073	ENSG00000235050.6|MLIP-AS1|lncRNA|chr6:54041040:54041073:-	0	-
#Deleted in new
chr6	54045537	54045825	ENSG00000235050.6|MLIP-AS1|lncRNA|chr6:54045537:54045825:-	0	-
#Deleted in new
chr6	54057946	54058000	ENSG00000235050.6|MLIP-AS1|lncRNA|chr6:54057946:54058000:-	0	-
#Deleted in new
chr6	54063266	54063340	ENSG00000235050.6|MLIP-AS1|lncRNA|chr6:54063266:54063340:-	0	-
#Deleted in new
chr6	54203606	54203820	ENSG00000146147.14|MLIP|pc|chr6:54203606:54203820:+	0	+
#Deleted in new
chr6	54327140	54327210	ENSG00000137251.15|TINAG|pc|chr6:54327140:54327210:+	0	+
#Deleted in new
chr6	54365334	54365519	ENSG00000228231.2|AL589946.1|lncRNA|chr6:54365334:54365519:-	0	-
#Deleted in new
chr6	54367004	54367178	ENSG00000228231.2|AL589946.1|lncRNA|chr6:54367004:54367178:-	0	-
#Partially deleted in new
chr6	54369910	54369971	ENSG00000228231.2|AL589946.1|lncRNA|chr6:54369910:54369971:-	0	-
#Deleted in new
chr6	54840117	54840488	ENSG00000224984.1|AL512363.1|lncRNA|chr6:54840117:54840488:-	0	-
#Deleted in new
chr6	54840640	54840855	ENSG00000224984.1|AL512363.1|lncRNA|chr6:54840640:54840855:-	0	-
#Partially deleted in new
chr6	55401789	55402493	ENSG00000187871.2|GFRAL|pc|chr6:55401789:55402493:+	0	+
#Partially deleted in new
chr6	55563818	55563914	ENSG00000146151.12|HMGCLL1|pc|chr6:55563818:55563914:-	0	-
#Deleted in new
chr6	55577077	55577167	ENSG00000146151.12|HMGCLL1|pc|chr6:55577077:55577167:-	0	-
#Partially deleted in new
chr6	56056589	56057844	ENSG00000124749.16|COL21A1|pc|chr6:56056589:56057844:-	0	-
#Partially deleted in new
chr6	56056590	56057844	ENSG00000124749.16|COL21A1|pc|chr6:56056590:56057844:-	0	-
#Partially deleted in new
chr6	56057319	56057844	ENSG00000124749.16|COL21A1|pc|chr6:56057319:56057844:-	0	-
#Deleted in new
chr6	56059164	56059242	ENSG00000124749.16|COL21A1|pc|chr6:56059164:56059242:-	0	-
#Deleted in new
chr6	56060017	56060116	ENSG00000124749.16|COL21A1|pc|chr6:56060017:56060116:-	0	-
#Deleted in new
chr6	56060017	56060218	ENSG00000124749.16|COL21A1|pc|chr6:56060017:56060218:-	0	-
#Deleted in new
chr6	56060017	56061177	ENSG00000124749.16|COL21A1|pc|chr6:56060017:56061177:-	0	-
#Deleted in new
chr6	56060070	56060080	ENSG00000124749.16|COL21A1|pc|chr6:56060070:56060080:-	0	-
#Deleted in new
chr6	56060740	56060795	ENSG00000124749.16|COL21A1|pc|chr6:56060740:56060795:-	0	-
#Deleted in new
chr6	56060890	56061035	ENSG00000124749.16|COL21A1|pc|chr6:56060890:56061035:-	0	-
#Deleted in new
chr6	56060890	56061037	ENSG00000124749.16|COL21A1|pc|chr6:56060890:56061037:-	0	-
#Deleted in new
chr6	56061648	56061681	ENSG00000124749.16|COL21A1|pc|chr6:56061648:56061681:-	0	-
#Deleted in new
chr6	56064577	56064609	ENSG00000124749.16|COL21A1|pc|chr6:56064577:56064609:-	0	-
#Deleted in new
chr6	56064577	56064622	ENSG00000124749.16|COL21A1|pc|chr6:56064577:56064622:-	0	-
#Deleted in new
chr6	56067294	56067330	ENSG00000124749.16|COL21A1|pc|chr6:56067294:56067330:-	0	-
#Deleted in new
chr6	56068769	56069117	ENSG00000124749.16|COL21A1|pc|chr6:56068769:56069117:-	0	-
#Deleted in new
chr6	56069045	56069117	ENSG00000124749.16|COL21A1|pc|chr6:56069045:56069117:-	0	-
#Deleted in new
chr6	56070744	56070798	ENSG00000124749.16|COL21A1|pc|chr6:56070744:56070798:-	0	-
#Deleted in new
chr6	56074231	56074285	ENSG00000124749.16|COL21A1|pc|chr6:56074231:56074285:-	0	-
#Deleted in new
chr6	56075478	56075532	ENSG00000124749.16|COL21A1|pc|chr6:56075478:56075532:-	0	-
#Deleted in new
chr6	56075508	56075532	ENSG00000124749.16|COL21A1|pc|chr6:56075508:56075532:-	0	-
#Deleted in new
chr6	56077528	56077573	ENSG00000124749.16|COL21A1|pc|chr6:56077528:56077573:-	0	-
#Deleted in new
chr6	56077528	56078102	ENSG00000124749.16|COL21A1|pc|chr6:56077528:56078102:-	0	-
#Deleted in new
chr6	56078092	56078188	ENSG00000124749.16|COL21A1|pc|chr6:56078092:56078188:-	0	-
#Deleted in new
chr6	56091496	56091661	ENSG00000124749.16|COL21A1|pc|chr6:56091496:56091661:-	0	-
#Deleted in new
chr6	56101471	56101525	ENSG00000124749.16|COL21A1|pc|chr6:56101471:56101525:-	0	-
#Deleted in new
chr6	56124061	56124115	ENSG00000124749.16|COL21A1|pc|chr6:56124061:56124115:-	0	-
#Deleted in new
chr6	56124238	56124292	ENSG00000124749.16|COL21A1|pc|chr6:56124238:56124292:-	0	-
#Deleted in new
chr6	56125390	56125620	ENSG00000124749.16|COL21A1|pc|chr6:56125390:56125620:-	0	-
#Deleted in new
chr6	56125427	56125620	ENSG00000124749.16|COL21A1|pc|chr6:56125427:56125620:-	0	-
#Deleted in new
chr6	56125566	56125608	ENSG00000124749.16|COL21A1|pc|chr6:56125566:56125608:-	0	-
#Deleted in new
chr6	56125566	56125620	ENSG00000124749.16|COL21A1|pc|chr6:56125566:56125620:-	0	-
#Deleted in new
chr6	56126095	56126149	ENSG00000124749.16|COL21A1|pc|chr6:56126095:56126149:-	0	-
#Deleted in new
chr6	56126095	56126643	ENSG00000124749.16|COL21A1|pc|chr6:56126095:56126643:-	0	-
#Deleted in new
chr6	56141784	56141838	ENSG00000124749.16|COL21A1|pc|chr6:56141784:56141838:-	0	-
#Deleted in new
chr6	56141929	56141983	ENSG00000124749.16|COL21A1|pc|chr6:56141929:56141983:-	0	-
#Deleted in new
chr6	56156886	56156949	ENSG00000124749.16|COL21A1|pc|chr6:56156886:56156949:-	0	-
#Deleted in new
chr6	56164422	56164506	ENSG00000124749.16|COL21A1|pc|chr6:56164422:56164506:-	0	-
#Deleted in new
chr6	56164422	56164508	ENSG00000124749.16|COL21A1|pc|chr6:56164422:56164508:-	0	-
#Deleted in new
chr6	56164813	56164822	ENSG00000124749.16|COL21A1|pc|chr6:56164813:56164822:-	0	-
#Deleted in new
chr6	56166901	56166983	ENSG00000124749.16|COL21A1|pc|chr6:56166901:56166983:-	0	-
#Deleted in new
chr6	56166905	56166937	ENSG00000124749.16|COL21A1|pc|chr6:56166905:56166937:-	0	-
#Deleted in new
chr6	56166905	56166983	ENSG00000124749.16|COL21A1|pc|chr6:56166905:56166983:-	0	-
#Deleted in new
chr6	56168123	56168297	ENSG00000124749.16|COL21A1|pc|chr6:56168123:56168297:-	0	-
#Deleted in new
chr6	56170648	56170865	ENSG00000124749.16|COL21A1|pc|chr6:56170648:56170865:-	0	-
#Deleted in new
chr6	56170959	56171128	ENSG00000124749.16|COL21A1|pc|chr6:56170959:56171128:-	0	-
#Deleted in new
chr6	56179577	56180129	ENSG00000124749.16|COL21A1|pc|chr6:56179577:56180129:-	0	-
#Deleted in new
chr6	56179808	56180129	ENSG00000124749.16|COL21A1|pc|chr6:56179808:56180129:-	0	-
#Deleted in new
chr6	56182530	56182656	ENSG00000124749.16|COL21A1|pc|chr6:56182530:56182656:-	0	-
#Deleted in new
chr6	56225859	56225911	ENSG00000124749.16|COL21A1|pc|chr6:56225859:56225911:-	0	-
#Deleted in new
chr6	56231060	56231134	ENSG00000124749.16|COL21A1|pc|chr6:56231060:56231134:-	0	-
#Deleted in new
chr6	56247386	56247435	ENSG00000124749.16|COL21A1|pc|chr6:56247386:56247435:-	0	-
#Deleted in new
chr6	56247386	56247437	ENSG00000124749.16|COL21A1|pc|chr6:56247386:56247437:-	0	-
#Deleted in new
chr6	56247386	56247746	ENSG00000124749.16|COL21A1|pc|chr6:56247386:56247746:-	0	-
#Deleted in new
chr6	56393970	56394094	ENSG00000124749.16|COL21A1|pc|chr6:56393970:56394094:-	0	-
#Deleted in new
chr6	56785770	56785879	ENSG00000151914.19|DST|pc|chr6:56785770:56785879:-	0	-
#Deleted in new
chr6	56843197	56843215	ENSG00000151914.19|DST|pc|chr6:56843197:56843215:-	0	-
#Partially deleted in new
chr6	56861827	56861915	ENSG00000231441.1|AL512422.2|lncRNA|chr6:56861827:56861915:+	0	+
#Partially deleted in new
chr6	56863070	56863244	ENSG00000231441.1|AL512422.2|lncRNA|chr6:56863070:56863244:+	0	+
#Deleted in new
chr6	5694881	5695008	ENSG00000270174.1|AL022097.1|lncRNA|chr6:5694881:5695008:-	0	-
#Deleted in new
chr6	5695144	5695272	ENSG00000270174.1|AL022097.1|lncRNA|chr6:5695144:5695272:-	0	-
#Deleted in new
chr6	57008180	57010944	ENSG00000151917.17|BEND6|pc|chr6:57008180:57010944:+	0	+
#Deleted in new
chr6	57013808	57014023	ENSG00000151917.17|BEND6|pc|chr6:57013808:57014023:+	0	+
#Partially deleted in new
chr6	57052685	57055225	ENSG00000168116.13|KIAA1586|pc|chr6:57052685:57055225:+	0	+
#Partially deleted in new
chr6	57052685	57055239	ENSG00000168116.13|KIAA1586|pc|chr6:57052685:57055239:+	0	+
#Deleted in new
chr6	57086843	57086908	ENSG00000112200.16|ZNF451|pc|chr6:57086843:57086908:+	0	+
#Deleted in new
chr6	57114893	57115258	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57114893:57115258:-	0	-
#Deleted in new
chr6	57114900	57115258	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57114900:57115258:-	0	-
#Deleted in new
chr6	57114910	57115258	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57114910:57115258:-	0	-
#Deleted in new
chr6	57114915	57115258	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57114915:57115258:-	0	-
#Deleted in new
chr6	57114923	57115258	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57114923:57115258:-	0	-
#Deleted in new
chr6	57114925	57115258	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57114925:57115258:-	0	-
#Deleted in new
chr6	57115176	57115258	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57115176:57115258:-	0	-
#Deleted in new
chr6	57116037	57116127	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57116037:57116127:-	0	-
#Deleted in new
chr6	57116425	57116547	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57116425:57116547:-	0	-
#Deleted in new
chr6	57116839	57116921	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57116839:57116921:-	0	-
#Deleted in new
chr6	57124428	57124523	ENSG00000112200.16|ZNF451|pc|chr6:57124428:57124523:+	0	+
#Deleted in new
chr6	57126531	57126599	ENSG00000112200.16|ZNF451|pc|chr6:57126531:57126599:+	0	+
#Deleted in new
chr6	57134146	57134215	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57134146:57134215:-	0	-
#Deleted in new
chr6	57164880	57165343	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57164880:57165343:-	0	-
#Deleted in new
chr6	57164880	57165433	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57164880:57165433:-	0	-
#Deleted in new
chr6	57165005	57165802	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57165005:57165802:-	0	-
#Deleted in new
chr6	57165176	57165775	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57165176:57165775:-	0	-
#Deleted in new
chr6	57165218	57165840	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57165218:57165840:-	0	-
#Deleted in new
chr6	57170192	57171049	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57170192:57171049:-	0	-
#Deleted in new
chr6	57171002	57171098	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57171002:57171098:-	0	-
#Deleted in new
chr6	57171004	57171049	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57171004:57171049:-	0	-
#Deleted in new
chr6	57171004	57171098	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57171004:57171098:-	0	-
#Partially deleted in new
chr6	57172073	57172422	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57172073:57172422:-	0	-
#Partially deleted in new
chr6	57173079	57173135	ENSG00000226803.7|AL136311.1|lncRNA|chr6:57173079:57173135:-	0	-
#Deleted in new
chr6	57221318	57221407	ENSG00000112210.11|RAB23|pc|chr6:57221318:57221407:-	0	-
#Deleted in new
chr6	57221725	57222314	ENSG00000112210.11|RAB23|pc|chr6:57221725:57222314:-	0	-
#Deleted in new
chr6	57586995	57587111	ENSG00000146143.17|PRIM2|pc|chr6:57586995:57587111:+	0	+
#Deleted in new
chr6	57855890	57856468	ENSG00000272541.1|AL021368.3|lncRNA|chr6:57855890:57856468:-	0	-
#Deleted in new
chr6	57902608	57903148	ENSG00000271761.1|AL021368.1|lncRNA|chr6:57902608:57903148:-	0	-
#Deleted in new
chr6	57908559	57913911	ENSG00000272316.1|AL021368.2|lncRNA|chr6:57908559:57913911:-	0	-
#Partially deleted in new
chr6	57961547	57961742	ENSG00000225096.2|AL445250.1|lncRNA|chr6:57961547:57961742:+	0	+
#Deleted in new
chr6	57961656	57961742	ENSG00000225096.2|AL445250.1|lncRNA|chr6:57961656:57961742:+	0	+
#Deleted in new
chr6	57962077	57962248	ENSG00000225096.2|AL445250.1|lncRNA|chr6:57962077:57962248:+	0	+
#Deleted in new
chr6	57962180	57962248	ENSG00000225096.2|AL445250.1|lncRNA|chr6:57962180:57962248:+	0	+
#Deleted in new
chr6	57965516	57965743	ENSG00000225096.2|AL445250.1|lncRNA|chr6:57965516:57965743:+	0	+
#Deleted in new
chr6	58038432	58038489	ENSG00000225096.2|AL445250.1|lncRNA|chr6:58038432:58038489:+	0	+
#Deleted in new
chr6	58038465	58038556	ENSG00000225096.2|AL445250.1|lncRNA|chr6:58038465:58038556:+	0	+
#Deleted in new
chr6	58091903	58092113	ENSG00000225096.2|AL445250.1|lncRNA|chr6:58091903:58092113:+	0	+
#Deleted in new
chr6	58095770	58096507	ENSG00000225096.2|AL445250.1|lncRNA|chr6:58095770:58096507:+	0	+
#Deleted in new
chr6	58162609	58162749	ENSG00000225096.2|AL445250.1|lncRNA|chr6:58162609:58162749:+	0	+
#Deleted in new
chr6	58325485	58325548	ENSG00000225096.2|AL445250.1|lncRNA|chr6:58325485:58325548:+	0	+
#Deleted in new
chr6	58436558	58436704	ENSG00000225096.2|AL445250.1|lncRNA|chr6:58436558:58436704:+	0	+
#Deleted in new
chr6	58437243	58438364	ENSG00000225096.2|AL445250.1|lncRNA|chr6:58437243:58438364:+	0	+
#Deleted in new
chr6	5852062	5852136	ENSG00000233064.2|AL136307.1|lncRNA|chr6:5852062:5852136:+	0	+
#Deleted in new
chr6	5870040	5870220	ENSG00000233064.2|AL136307.1|lncRNA|chr6:5870040:5870220:+	0	+
#Deleted in new
chr6	63521747	63521826	ENSG00000112245.10|PTP4A1|pc|chr6:63521747:63521826:+	0	+
#Deleted in new
chr6	63521760	63521826	ENSG00000112245.10|PTP4A1|pc|chr6:63521760:63521826:+	0	+
#Deleted in new
chr6	63573237	63573613	ENSG00000112245.10|PTP4A1|pc|chr6:63573237:63573613:+	0	+
#Partially deleted in new
chr6	6366131	6366609	ENSG00000216863.9|LY86-AS1|lncRNA|chr6:6366131:6366609:-	0	-
#Partially deleted in new
chr6	6366354	6366609	ENSG00000216863.9|LY86-AS1|lncRNA|chr6:6366354:6366609:-	0	-
#Deleted in new
chr6	6369001	6369155	ENSG00000216863.9|LY86-AS1|lncRNA|chr6:6369001:6369155:-	0	-
#Deleted in new
chr6	63719979	63721797	ENSG00000188107.14|EYS|pc|chr6:63719979:63721797:-	0	-
#Deleted in new
chr6	63720135	63721797	ENSG00000188107.14|EYS|pc|chr6:63720135:63721797:-	0	-
#Deleted in new
chr6	63726518	63726680	ENSG00000188107.14|EYS|pc|chr6:63726518:63726680:-	0	-
#Partially deleted in new
chr6	63744110	63745020	ENSG00000188107.14|EYS|pc|chr6:63744110:63745020:-	0	-
#Deleted in new
chr6	63762460	63762633	ENSG00000188107.14|EYS|pc|chr6:63762460:63762633:-	0	-
#Deleted in new
chr6	63777604	63778243	ENSG00000118482.11|PHF3|pc|chr6:63777604:63778243:+	0	+
#Deleted in new
chr6	63778005	63778180	ENSG00000188107.14|EYS|pc|chr6:63778005:63778180:-	0	-
#Deleted in new
chr6	63778065	63778243	ENSG00000118482.11|PHF3|pc|chr6:63778065:63778243:+	0	+
#Deleted in new
chr6	63779137	63779208	ENSG00000118482.11|PHF3|pc|chr6:63779137:63779208:+	0	+
#Deleted in new
chr6	63779137	63779336	ENSG00000118482.11|PHF3|pc|chr6:63779137:63779336:+	0	+
#Deleted in new
chr6	63786002	63786201	ENSG00000188107.14|EYS|pc|chr6:63786002:63786201:-	0	-
#Deleted in new
chr6	63787266	63787371	ENSG00000188107.14|EYS|pc|chr6:63787266:63787371:-	0	-
#Deleted in new
chr6	63788104	63788249	ENSG00000188107.14|EYS|pc|chr6:63788104:63788249:-	0	-
#Deleted in new
chr6	63821239	63822642	ENSG00000236345.1|AL354719.2|lncRNA|chr6:63821239:63822642:+	0	+
#Partially deleted in new
chr6	63864185	63864358	ENSG00000188107.14|EYS|pc|chr6:63864185:63864358:-	0	-
#Deleted in new
chr6	64230591	64230824	ENSG00000188107.14|EYS|pc|chr6:64230591:64230824:-	0	-
#Deleted in new
chr6	64412635	64412779	ENSG00000232120.1|AL357375.1|lncRNA|chr6:64412635:64412779:+	0	+
#Deleted in new
chr6	64439161	64439352	ENSG00000188107.14|EYS|pc|chr6:64439161:64439352:-	0	-
#Deleted in new
chr6	64593116	64593309	ENSG00000188107.14|EYS|pc|chr6:64593116:64593309:-	0	-
#Deleted in new
chr6	64593130	64593309	ENSG00000188107.14|EYS|pc|chr6:64593130:64593309:-	0	-
#Deleted in new
chr6	64626120	64626245	ENSG00000188107.14|EYS|pc|chr6:64626120:64626245:-	0	-
#Deleted in new
chr6	64902112	64902220	ENSG00000188107.14|EYS|pc|chr6:64902112:64902220:-	0	-
#Deleted in new
chr6	64902403	64902500	ENSG00000188107.14|EYS|pc|chr6:64902403:64902500:-	0	-
#Deleted in new
chr6	64945792	64945914	ENSG00000188107.14|EYS|pc|chr6:64945792:64945914:-	0	-
#Deleted in new
chr6	65300846	65300938	ENSG00000188107.14|EYS|pc|chr6:65300846:65300938:-	0	-
#Deleted in new
chr6	65334909	65335146	ENSG00000188107.14|EYS|pc|chr6:65334909:65335146:-	0	-
#Deleted in new
chr6	65334979	65335146	ENSG00000188107.14|EYS|pc|chr6:65334979:65335146:-	0	-
#Deleted in new
chr6	65344037	65344177	ENSG00000188107.14|EYS|pc|chr6:65344037:65344177:-	0	-
#Deleted in new
chr6	65353457	65353617	ENSG00000188107.14|EYS|pc|chr6:65353457:65353617:-	0	-
#Deleted in new
chr6	65402477	65402605	ENSG00000188107.14|EYS|pc|chr6:65402477:65402605:-	0	-
#Deleted in new
chr6	65405173	65405367	ENSG00000188107.14|EYS|pc|chr6:65405173:65405367:-	0	-
#Partially deleted in new
chr6	65489360	65490707	ENSG00000188107.14|EYS|pc|chr6:65489360:65490707:-	0	-
#Deleted in new
chr6	65495476	65495607	ENSG00000188107.14|EYS|pc|chr6:65495476:65495607:-	0	-
#Deleted in new
chr6	65495858	65495993	ENSG00000188107.14|EYS|pc|chr6:65495858:65495993:-	0	-
#Deleted in new
chr6	65495858	65495998	ENSG00000188107.14|EYS|pc|chr6:65495858:65495998:-	0	-
#Deleted in new
chr6	65639777	65639892	ENSG00000188107.14|EYS|pc|chr6:65639777:65639892:-	0	-
#Deleted in new
chr6	6564294	6564388	ENSG00000216863.9|LY86-AS1|lncRNA|chr6:6564294:6564388:-	0	-
#Deleted in new
chr6	6587044	6587193	ENSG00000216863.9|LY86-AS1|lncRNA|chr6:6587044:6587193:-	0	-
#Deleted in new
chr6	6620846	6621383	ENSG00000216863.9|LY86-AS1|lncRNA|chr6:6620846:6621383:-	0	-
#Deleted in new
chr6	6620963	6621469	ENSG00000216863.9|LY86-AS1|lncRNA|chr6:6620963:6621469:-	0	-
#Partially deleted in new
chr6	6685147	6686984	ENSG00000279368.1|AL031123.3|lncRNA|chr6:6685147:6686984:+	0	+
#Deleted in new
chr6	6710871	6711002	ENSG00000226281.2|AL031123.1|lncRNA|chr6:6710871:6711002:-	0	-
#Deleted in new
chr6	6758275	6758444	ENSG00000224532.2|AL136361.1|lncRNA|chr6:6758275:6758444:-	0	-
#Deleted in new
chr6	67887645	67888821	ENSG00000227706.3|AL713998.1|lncRNA|chr6:67887645:67888821:-	0	-
#Deleted in new
chr6	67888910	67889339	ENSG00000227706.3|AL713998.1|lncRNA|chr6:67888910:67889339:-	0	-
#Deleted in new
chr6	679142	679514	ENSG00000112685.13|EXOC2|pc|chr6:679142:679514:-	0	-
#Deleted in new
chr6	68055350	68055435	ENSG00000223504.1|AL646090.1|lncRNA|chr6:68055350:68055435:+	0	+
#Deleted in new
chr6	68266499	68266615	ENSG00000226497.1|LINC02549|lncRNA|chr6:68266499:68266615:-	0	-
#Deleted in new
chr6	68326944	68327072	ENSG00000226497.1|LINC02549|lncRNA|chr6:68326944:68327072:-	0	-
#Deleted in new
chr6	68629961	68630465	ENSG00000230910.2|AL391807.1|lncRNA|chr6:68629961:68630465:-	0	-
#Partially deleted in new
chr6	68630571	68630650	ENSG00000230910.2|AL391807.1|lncRNA|chr6:68630571:68630650:-	0	-
#Deleted in new
chr6	6918509	6918715	ENSG00000223342.2|AL158817.1|lncRNA|chr6:6918509:6918715:-	0	-
#Deleted in new
chr6	69889917	69891220	ENSG00000082293.12|COL19A1|pc|chr6:69889917:69891220:+	0	+
#Deleted in new
chr6	6993190	6993372	ENSG00000203498.2|AL139390.1|lncRNA|chr6:6993190:6993372:+	0	+
#Partially deleted in new
chr6	70245654	70246303	ENSG00000112280.15|COL9A1|pc|chr6:70245654:70246303:-	0	-
#Deleted in new
chr6	70394886	70395043	ENSG00000237643.1|AL365226.2|lncRNA|chr6:70394886:70395043:+	0	+
#Deleted in new
chr6	70395229	70395266	ENSG00000237643.1|AL365226.2|lncRNA|chr6:70395229:70395266:+	0	+
#Deleted in new
chr6	70418374	70418492	ENSG00000082269.16|FAM135A|pc|chr6:70418374:70418492:+	0	+
#Partially deleted in new
chr6	70502635	70504960	ENSG00000082269.16|FAM135A|pc|chr6:70502635:70504960:+	0	+
#Deleted in new
chr6	70566916	70567004	ENSG00000154079.5|SDHAF4|pc|chr6:70566916:70567004:+	0	+
#Deleted in new
chr6	70567415	70567659	ENSG00000154079.5|SDHAF4|pc|chr6:70567415:70567659:+	0	+
#Deleted in new
chr6	70837780	70837912	ENSG00000112305.14|SMAP1|pc|chr6:70837780:70837912:+	0	+
#Partially deleted in new
chr6	70859328	70859416	ENSG00000112305.14|SMAP1|pc|chr6:70859328:70859416:+	0	+
#Deleted in new
chr6	71221456	71221554	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71221456:71221554:-	0	-
#Deleted in new
chr6	71222645	71222715	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71222645:71222715:-	0	-
#Deleted in new
chr6	71229825	71229927	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71229825:71229927:-	0	-
#Partially deleted in new
chr6	71251357	71251621	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71251357:71251621:-	0	-
#Deleted in new
chr6	71253683	71254203	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71253683:71254203:-	0	-
#Deleted in new
chr6	71277218	71277314	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71277218:71277314:-	0	-
#Partially deleted in new
chr6	71295544	71295813	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71295544:71295813:-	0	-
#Deleted in new
chr6	71295710	71295813	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71295710:71295813:-	0	-
#Deleted in new
chr6	71311465	71311648	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71311465:71311648:-	0	-
#Deleted in new
chr6	71326329	71326620	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71326329:71326620:-	0	-
#Deleted in new
chr6	71327977	71328053	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71327977:71328053:-	0	-
#Deleted in new
chr6	71327977	71328057	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71327977:71328057:-	0	-
#Deleted in new
chr6	71327977	71328058	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71327977:71328058:-	0	-
#Deleted in new
chr6	71327977	71328059	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71327977:71328059:-	0	-
#Deleted in new
chr6	71327977	71328063	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71327977:71328063:-	0	-
#Deleted in new
chr6	71327977	71328084	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71327977:71328084:-	0	-
#Deleted in new
chr6	71327977	71328217	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71327977:71328217:-	0	-
#Deleted in new
chr6	71327977	71328228	ENSG00000232295.7|AL589935.1|lncRNA|chr6:71327977:71328228:-	0	-
#Deleted in new
chr6	71328941	71328995	ENSG00000230597.1|AL136164.1|lncRNA|chr6:71328941:71328995:+	0	+
#Deleted in new
chr6	71329508	71329806	ENSG00000230597.1|AL136164.1|lncRNA|chr6:71329508:71329806:+	0	+
#Partially deleted in new
chr6	71344343	71344693	ENSG00000233237.6|LINC00472|lncRNA|chr6:71344343:71344693:-	0	-
#Partially deleted in new
chr6	71373252	71375387	ENSG00000279312.1|AL136164.4|lncRNA|chr6:71373252:71375387:-	0	-
#Deleted in new
chr6	71450833	71450906	ENSG00000223765.2|LINC01626|lncRNA|chr6:71450833:71450906:+	0	+
#Deleted in new
chr6	71458478	71458671	ENSG00000223765.2|LINC01626|lncRNA|chr6:71458478:71458671:+	0	+
#Deleted in new
chr6	71458779	71458874	ENSG00000223765.2|LINC01626|lncRNA|chr6:71458779:71458874:+	0	+
#Deleted in new
chr6	72630494	72630591	ENSG00000233844.1|KCNQ5-IT1|lncRNA|chr6:72630494:72630591:+	0	+
#Deleted in new
chr6	72640733	72640874	ENSG00000233844.1|KCNQ5-IT1|lncRNA|chr6:72640733:72640874:+	0	+
#Deleted in new
chr6	72806858	72806873	ENSG00000185760.15|KCNQ5|pc|chr6:72806858:72806873:+	0	+
#Deleted in new
chr6	7296882	7297209	ENSG00000124783.12|SSR1|pc|chr6:7296882:7297209:-	0	-
#Deleted in new
chr6	73135286	73135352	ENSG00000229154.1|KCNQ5-AS1|lncRNA|chr6:73135286:73135352:-	0	-
#Deleted in new
chr6	73216518	73216639	ENSG00000243501.5|AL365232.1|pc|chr6:73216518:73216639:-	0	-
#Duplicated in new
chr6	73225296	73225770	ENSG00000256980.4|KHDC1L|pc|chr6:73225296:73225770:-	0	-
#Deleted in new
chr6	73262773	73263065	ENSG00000135314.12|KHDC1|pc|chr6:73262773:73263065:-	0	-
#Deleted in new
chr6	73262773	73263184	ENSG00000135314.12|KHDC1|pc|chr6:73262773:73263184:-	0	-
#Deleted in new
chr6	73262773	73263196	ENSG00000243501.5|AL365232.1|pc|chr6:73262773:73263196:-	0	-
#Deleted in new
chr6	73262933	73263172	ENSG00000135314.12|KHDC1|pc|chr6:73262933:73263172:-	0	-
#Deleted in new
chr6	73263095	73263184	ENSG00000135314.12|KHDC1|pc|chr6:73263095:73263184:-	0	-
#Deleted in new
chr6	73263214	73263416	ENSG00000229852.2|AC019205.2|lncRNA|chr6:73263214:73263416:+	0	+
#Deleted in new
chr6	73263358	73263416	ENSG00000229852.2|AC019205.2|lncRNA|chr6:73263358:73263416:+	0	+
#Deleted in new
chr6	7326655	7326899	ENSG00000164304.15|CAGE1|pc|chr6:7326655:7326899:-	0	-
#Deleted in new
chr6	7326658	7326899	ENSG00000164304.15|CAGE1|pc|chr6:7326658:7326899:-	0	-
#Deleted in new
chr6	7326683	7326899	ENSG00000164304.15|CAGE1|pc|chr6:7326683:7326899:-	0	-
#Deleted in new
chr6	7326741	7326899	ENSG00000164304.15|CAGE1|pc|chr6:7326741:7326899:-	0	-
#Deleted in new
chr6	73268050	73270527	ENSG00000229852.2|AC019205.2|lncRNA|chr6:73268050:73270527:+	0	+
#Deleted in new
chr6	7326857	7326899	ENSG00000164304.15|CAGE1|pc|chr6:7326857:7326899:-	0	-
#Deleted in new
chr6	73270397	73270527	ENSG00000229852.2|AC019205.2|lncRNA|chr6:73270397:73270527:+	0	+
#Deleted in new
chr6	73274138	73275556	ENSG00000135314.12|KHDC1|pc|chr6:73274138:73275556:-	0	-
#Deleted in new
chr6	73275045	73275159	ENSG00000135314.12|KHDC1|pc|chr6:73275045:73275159:-	0	-
#Deleted in new
chr6	73275413	73275556	ENSG00000135314.12|KHDC1|pc|chr6:73275413:73275556:-	0	-
#Deleted in new
chr6	73275766	73276517	ENSG00000229852.2|AC019205.2|lncRNA|chr6:73275766:73276517:+	0	+
#Deleted in new
chr6	73284657	73284734	ENSG00000229852.2|AC019205.2|lncRNA|chr6:73284657:73284734:+	0	+
#Deleted in new
chr6	7329096	7329266	ENSG00000164304.15|CAGE1|pc|chr6:7329096:7329266:-	0	-
#Deleted in new
chr6	73299056	73301401	ENSG00000229852.2|AC019205.2|lncRNA|chr6:73299056:73301401:+	0	+
#Deleted in new
chr6	73310305	73310365	ENSG00000135314.12|KHDC1|pc|chr6:73310305:73310365:-	0	-
#Deleted in new
chr6	73362676	73362898	ENSG00000203908.3|KHDC3L|pc|chr6:73362676:73362898:+	0	+
#Deleted in new
chr6	73363094	73363274	ENSG00000203908.3|KHDC3L|pc|chr6:73363094:73363274:+	0	+
#Deleted in new
chr6	73363555	73364171	ENSG00000203908.3|KHDC3L|pc|chr6:73363555:73364171:+	0	+
#Deleted in new
chr6	73387636	73387717	ENSG00000231332.2|OOEP-AS1|lncRNA|chr6:73387636:73387717:+	0	+
#Deleted in new
chr6	73394345	73394488	ENSG00000203907.9|OOEP|pc|chr6:73394345:73394488:-	0	-
#Partially deleted in new
chr6	73397688	73397994	ENSG00000080007.7|DDX43|pc|chr6:73397688:73397994:+	0	+
#Partially deleted in new
chr6	73406964	73407008	ENSG00000080007.7|DDX43|pc|chr6:73406964:73407008:+	0	+
#Deleted in new
chr6	73462142	73462322	ENSG00000135297.15|MTO1|pc|chr6:73462142:73462322:+	0	+
#Deleted in new
chr6	73471459	73471557	ENSG00000135297.15|MTO1|pc|chr6:73471459:73471557:+	0	+
#Deleted in new
chr6	73471459	73471795	ENSG00000135297.15|MTO1|pc|chr6:73471459:73471795:+	0	+
#Deleted in new
chr6	7347371	7347446	ENSG00000124783.12|SSR1|pc|chr6:7347371:7347446:-	0	-
#Partially deleted in new
chr6	73480165	73480367	ENSG00000135297.15|MTO1|pc|chr6:73480165:73480367:+	0	+
#Deleted in new
chr6	73480292	73480367	ENSG00000135297.15|MTO1|pc|chr6:73480292:73480367:+	0	+
#Deleted in new
chr6	73480295	73480367	ENSG00000135297.15|MTO1|pc|chr6:73480295:73480367:+	0	+
#Deleted in new
chr6	73480317	73480367	ENSG00000135297.15|MTO1|pc|chr6:73480317:73480367:+	0	+
#Deleted in new
chr6	73480996	73481116	ENSG00000135297.15|MTO1|pc|chr6:73480996:73481116:+	0	+
#Deleted in new
chr6	73481000	73481028	ENSG00000135297.15|MTO1|pc|chr6:73481000:73481028:+	0	+
#Deleted in new
chr6	73481000	73481116	ENSG00000135297.15|MTO1|pc|chr6:73481000:73481116:+	0	+
#Deleted in new
chr6	73486597	73486761	ENSG00000135297.15|MTO1|pc|chr6:73486597:73486761:+	0	+
#Partially deleted in new
chr6	73500573	73501096	ENSG00000135297.15|MTO1|pc|chr6:73500573:73501096:+	0	+
#Partially deleted in new
chr6	73500573	73501452	ENSG00000135297.15|MTO1|pc|chr6:73500573:73501452:+	0	+
#Partially deleted in new
chr6	73500573	73509236	ENSG00000135297.15|MTO1|pc|chr6:73500573:73509236:+	0	+
#Partially deleted in new
chr6	73515749	73517934	ENSG00000156508.17|EEF1A1|pc|chr6:73515749:73517934:-	0	-
#Partially deleted in new
chr6	73515751	73517934	ENSG00000156508.17|EEF1A1|pc|chr6:73515751:73517934:-	0	-
#Deleted in new
chr6	73524455	73524546	ENSG00000229862.5|AL121972.2|lncRNA|chr6:73524455:73524546:+	0	+
#Deleted in new
chr6	73525885	73526002	ENSG00000229862.5|AL121972.2|lncRNA|chr6:73525885:73526002:+	0	+
#Partially deleted in new
chr6	73570286	73570533	ENSG00000229862.5|AL121972.2|lncRNA|chr6:73570286:73570533:+	0	+
#Partially deleted in new
chr6	73570286	73570596	ENSG00000229862.5|AL121972.2|lncRNA|chr6:73570286:73570596:+	0	+
#Deleted in new
chr6	73803965	73804076	ENSG00000156535.13|CD109|pc|chr6:73803965:73804076:+	0	+
#Partially deleted in new
chr6	73971345	73973115	ENSG00000279790.1|AL590552.1|lncRNA|chr6:73971345:73973115:+	0	+
#Deleted in new
chr6	74530247	74530597	ENSG00000272243.5|AL356277.3|lncRNA|chr6:74530247:74530597:-	0	-
#Deleted in new
chr6	74594178	74594612	ENSG00000272243.5|AL356277.3|lncRNA|chr6:74594178:74594612:-	0	-
#Deleted in new
chr6	74594582	74594612	ENSG00000272243.5|AL356277.3|lncRNA|chr6:74594582:74594612:-	0	-
#Deleted in new
chr6	74595060	74595213	ENSG00000272243.5|AL356277.3|lncRNA|chr6:74595060:74595213:-	0	-
#Deleted in new
chr6	74645581	74645640	ENSG00000272243.5|AL356277.3|lncRNA|chr6:74645581:74645640:-	0	-
#Deleted in new
chr6	74674063	74674148	ENSG00000223786.1|AL357507.1|lncRNA|chr6:74674063:74674148:+	0	+
#Partially deleted in new
chr6	74690336	74690727	ENSG00000223786.1|AL357507.1|lncRNA|chr6:74690336:74690727:+	0	+
#Deleted in new
chr6	750658	750729	ENSG00000271727.1|AL357054.2|lncRNA|chr6:750658:750729:+	0	+
#Deleted in new
chr6	75241821	75241938	ENSG00000112695.11|COX7A2|pc|chr6:75241821:75241938:-	0	-
#Deleted in new
chr6	75272463	75272900	ENSG00000112697.15|TMEM30A|pc|chr6:75272463:75272900:-	0	-
#Deleted in new
chr6	75360811	75360916	ENSG00000237174.7|AL445465.1|lncRNA|chr6:75360811:75360916:+	0	+
#Deleted in new
chr6	75360812	75360916	ENSG00000237174.7|AL445465.1|lncRNA|chr6:75360812:75360916:+	0	+
#Deleted in new
chr6	75360848	75360916	ENSG00000237174.7|AL445465.1|lncRNA|chr6:75360848:75360916:+	0	+
#Partially deleted in new
chr6	75367336	75367662	ENSG00000237174.7|AL445465.1|lncRNA|chr6:75367336:75367662:+	0	+
#Deleted in new
chr6	75384819	75384937	ENSG00000237174.7|AL445465.1|lncRNA|chr6:75384819:75384937:+	0	+
#Deleted in new
chr6	75398899	75398998	ENSG00000237174.7|AL445465.1|lncRNA|chr6:75398899:75398998:+	0	+
#Deleted in new
chr6	75458161	75458236	ENSG00000238156.1|AL445465.2|lncRNA|chr6:75458161:75458236:+	0	+
#Deleted in new
chr6	75646510	75646851	ENSG00000112701.17|SENP6|pc|chr6:75646510:75646851:+	0	+
#Partially deleted in new
chr6	75676603	75678692	ENSG00000112701.17|SENP6|pc|chr6:75676603:75678692:+	0	+
#Partially deleted in new
chr6	75678810	75679867	ENSG00000112701.17|SENP6|pc|chr6:75678810:75679867:+	0	+
#Deleted in new
chr6	76024897	76025013	ENSG00000112706.11|IMPG1|pc|chr6:76024897:76025013:-	0	-
#Partially deleted in new
chr6	76522450	76522804	ENSG00000236635.2|LINC02540|lncRNA|chr6:76522450:76522804:-	0	-
#Deleted in new
chr6	76561327	76561667	ENSG00000280511.1|AL591030.1|lncRNA|chr6:76561327:76561667:+	0	+
#Deleted in new
chr6	76562303	76562590	ENSG00000280511.1|AL591030.1|lncRNA|chr6:76562303:76562590:+	0	+
#Partially deleted in new
chr6	76586447	76586566	ENSG00000236635.2|LINC02540|lncRNA|chr6:76586447:76586566:-	0	-
#Deleted in new
chr6	76593526	76593623	ENSG00000236635.2|LINC02540|lncRNA|chr6:76593526:76593623:-	0	-
#Deleted in new
chr6	76774982	76775075	ENSG00000271945.1|AL590426.2|lncRNA|chr6:76774982:76775075:+	0	+
#Deleted in new
chr6	778759	778885	ENSG00000271911.1|AL357054.3|lncRNA|chr6:778759:778885:+	0	+
#Deleted in new
chr6	779926	780648	ENSG00000271911.1|AL357054.3|lncRNA|chr6:779926:780648:+	0	+
#Deleted in new
chr6	780001	780214	ENSG00000272485.1|AL392183.1|lncRNA|chr6:780001:780214:-	0	-
#Deleted in new
chr6	78605754	78606036	ENSG00000230309.1|AL121718.1|lncRNA|chr6:78605754:78606036:-	0	-
#Deleted in new
chr6	78813121	78813303	ENSG00000229495.1|AL450327.1|lncRNA|chr6:78813121:78813303:-	0	-
#Deleted in new
chr6	78871290	78872135	ENSG00000146243.13|IRAK1BP1|pc|chr6:78871290:78872135:+	0	+
#Partially deleted in new
chr6	78898063	78903102	ENSG00000146243.13|IRAK1BP1|pc|chr6:78898063:78903102:+	0	+
#Deleted in new
chr6	78902618	78903102	ENSG00000146243.13|IRAK1BP1|pc|chr6:78902618:78903102:+	0	+
#Deleted in new
chr6	78902991	78903101	ENSG00000146243.13|IRAK1BP1|pc|chr6:78902991:78903101:+	0	+
#Deleted in new
chr6	78902991	78903110	ENSG00000146243.13|IRAK1BP1|pc|chr6:78902991:78903110:+	0	+
#Deleted in new
chr6	79525163	79525269	ENSG00000135338.13|LCA5|pc|chr6:79525163:79525269:-	0	-
#Deleted in new
chr6	79573876	79575530	ENSG00000279659.1|AL451064.2|lncRNA|chr6:79573876:79575530:+	0	+
#Deleted in new
chr6	79803582	79803898	ENSG00000235357.1|LINC01621|lncRNA|chr6:79803582:79803898:-	0	-
#Deleted in new
chr6	79805895	79806048	ENSG00000235357.1|LINC01621|lncRNA|chr6:79805895:79806048:-	0	-
#Deleted in new
chr6	79807213	79807225	ENSG00000235357.1|LINC01621|lncRNA|chr6:79807213:79807225:-	0	-
#Deleted in new
chr6	80006104	80006175	ENSG00000112742.9|TTK|pc|chr6:80006104:80006175:+	0	+
#Deleted in new
chr6	80135844	80135887	ENSG00000083123.14|BCKDHB|pc|chr6:80135844:80135887:+	0	+
#Partially deleted in new
chr6	80251711	80251781	ENSG00000083123.14|BCKDHB|pc|chr6:80251711:80251781:+	0	+
#Deleted in new
chr6	8041846	8041908	ENSG00000188428.19|BLOC1S5|pc|chr6:8041846:8041908:-	0	-
#Deleted in new
chr6	80443343	80443538	ENSG00000233967.6|AL359715.2|lncRNA|chr6:80443343:80443538:+	0	+
#Deleted in new
chr6	80443389	80443538	ENSG00000233967.6|AL359715.2|lncRNA|chr6:80443389:80443538:+	0	+
#Partially deleted in new
chr6	80466957	80469080	ENSG00000260645.1|AL359715.3|lncRNA|chr6:80466957:80469080:+	0	+
#Deleted in new
chr6	8054269	8054372	ENSG00000188428.19|BLOC1S5|pc|chr6:8054269:8054372:-	0	-
#Deleted in new
chr6	8073359	8073510	ENSG00000124802.11|EEF1E1|pc|chr6:8073359:8073510:-	0	-
#Deleted in new
chr6	8078493	8078740	ENSG00000124802.11|EEF1E1|pc|chr6:8078493:8078740:-	0	-
#Deleted in new
chr6	8095377	8095495	ENSG00000124802.11|EEF1E1|pc|chr6:8095377:8095495:-	0	-
#Deleted in new
chr6	8101764	8102046	ENSG00000124802.11|EEF1E1|pc|chr6:8101764:8102046:-	0	-
#Deleted in new
chr6	81495033	81495113	ENSG00000112773.15|FAM46A|pc|chr6:81495033:81495113:-	0	-
#Partially deleted in new
chr6	81527101	81527545	ENSG00000226089.2|AL122017.1|lncRNA|chr6:81527101:81527545:-	0	-
#Deleted in new
chr6	81527366	81527545	ENSG00000226089.2|AL122017.1|lncRNA|chr6:81527366:81527545:-	0	-
#Deleted in new
chr6	81534846	81534915	ENSG00000226089.2|AL122017.1|lncRNA|chr6:81534846:81534915:-	0	-
#Deleted in new
chr6	81724721	81724865	ENSG00000232031.1|AL078599.2|lncRNA|chr6:81724721:81724865:-	0	-
#Deleted in new
chr6	81731485	81731572	ENSG00000232031.1|AL078599.2|lncRNA|chr6:81731485:81731572:-	0	-
#Partially deleted in new
chr6	81813285	81813676	ENSG00000224995.1|LINC01526|lncRNA|chr6:81813285:81813676:-	0	-
#Deleted in new
chr6	81928856	81928901	ENSG00000226453.1|LINC02542|lncRNA|chr6:81928856:81928901:-	0	-
#Deleted in new
chr6	82174897	82175002	ENSG00000005700.14|IBTK|pc|chr6:82174897:82175002:-	0	-
#Deleted in new
chr6	83032241	83032310	ENSG00000118420.16|UBE3D|pc|chr6:83032241:83032310:-	0	-
#Deleted in new
chr6	83063152	83063245	ENSG00000118420.16|UBE3D|pc|chr6:83063152:83063245:-	0	-
#Deleted in new
chr6	83063208	83063245	ENSG00000118420.16|UBE3D|pc|chr6:83063208:83063245:-	0	-
#Deleted in new
chr6	83161149	83161242	ENSG00000013375.15|PGM3|pc|chr6:83161149:83161242:-	0	-
#Deleted in new
chr6	83166129	83166466	ENSG00000013375.15|PGM3|pc|chr6:83166129:83166466:-	0	-
#Deleted in new
chr6	8341936	8342648	ENSG00000234763.1|AL359378.2|lncRNA|chr6:8341936:8342648:-	0	-
#Deleted in new
chr6	8342324	8342455	ENSG00000232234.2|AL359378.1|lncRNA|chr6:8342324:8342455:+	0	+
#Deleted in new
chr6	8342987	8343021	ENSG00000234763.1|AL359378.2|lncRNA|chr6:8342987:8343021:-	0	-
#Partially deleted in new
chr6	83686127	83686223	ENSG00000065609.14|SNAP91|pc|chr6:83686127:83686223:-	0	-
#Deleted in new
chr6	83736271	83736525	ENSG00000237874.2|AL136972.1|lncRNA|chr6:83736271:83736525:+	0	+
#Deleted in new
chr6	83910067	83910296	ENSG00000065615.13|CYB5R4|pc|chr6:83910067:83910296:+	0	+
#Deleted in new
chr6	83926268	83926331	ENSG00000065615.13|CYB5R4|pc|chr6:83926268:83926331:+	0	+
#Partially deleted in new
chr6	83959823	83967424	ENSG00000065615.13|CYB5R4|pc|chr6:83959823:83967424:+	0	+
#Deleted in new
chr6	83983727	83983756	ENSG00000228679.1|AL034347.1|lncRNA|chr6:83983727:83983756:+	0	+
#Deleted in new
chr6	83988091	83988196	ENSG00000228679.1|AL034347.1|lncRNA|chr6:83988091:83988196:+	0	+
#Deleted in new
chr6	84217798	84217860	ENSG00000135315.11|CEP162|pc|chr6:84217798:84217860:-	0	-
#Deleted in new
chr6	84463677	84463787	ENSG00000231776.5|LINC01611|lncRNA|chr6:84463677:84463787:-	0	-
#Partially deleted in new
chr6	84470790	84470904	ENSG00000231776.5|LINC01611|lncRNA|chr6:84470790:84470904:-	0	-
#Deleted in new
chr6	84474826	84474929	ENSG00000231776.5|LINC01611|lncRNA|chr6:84474826:84474929:-	0	-
#Deleted in new
chr6	84556018	84556152	ENSG00000231776.5|LINC01611|lncRNA|chr6:84556018:84556152:-	0	-
#Deleted in new
chr6	84689424	84689561	ENSG00000228290.6|TBX18-AS1|lncRNA|chr6:84689424:84689561:+	0	+
#Deleted in new
chr6	84689448	84689736	ENSG00000228290.6|TBX18-AS1|lncRNA|chr6:84689448:84689736:+	0	+
#Deleted in new
chr6	84689451	84689561	ENSG00000228290.6|TBX18-AS1|lncRNA|chr6:84689451:84689561:+	0	+
#Deleted in new
chr6	84689459	84689561	ENSG00000228290.6|TBX18-AS1|lncRNA|chr6:84689459:84689561:+	0	+
#Deleted in new
chr6	84689460	84689561	ENSG00000228290.6|TBX18-AS1|lncRNA|chr6:84689460:84689561:+	0	+
#Deleted in new
chr6	84689504	84689561	ENSG00000228290.6|TBX18-AS1|lncRNA|chr6:84689504:84689561:+	0	+
#Deleted in new
chr6	84692289	84692626	ENSG00000228290.6|TBX18-AS1|lncRNA|chr6:84692289:84692626:+	0	+
#Partially deleted in new
chr6	84694909	84695108	ENSG00000228290.6|TBX18-AS1|lncRNA|chr6:84694909:84695108:+	0	+
#Deleted in new
chr6	84697511	84697571	ENSG00000228290.6|TBX18-AS1|lncRNA|chr6:84697511:84697571:+	0	+
#Deleted in new
chr6	84699643	84699800	ENSG00000228290.6|TBX18-AS1|lncRNA|chr6:84699643:84699800:+	0	+
#Deleted in new
chr6	85498440	85499058	ENSG00000280232.1|AL589666.2|lncRNA|chr6:85498440:85499058:-	0	-
#Deleted in new
chr6	85561214	85561340	ENSG00000135317.12|SNX14|pc|chr6:85561214:85561340:-	0	-
#Partially deleted in new
chr6	85567533	85568483	ENSG00000135317.12|SNX14|pc|chr6:85567533:85568483:-	0	-
#Deleted in new
chr6	85581195	85581846	ENSG00000135317.12|SNX14|pc|chr6:85581195:85581846:-	0	-
#Deleted in new
chr6	85588862	85589693	ENSG00000135317.12|SNX14|pc|chr6:85588862:85589693:-	0	-
#Deleted in new
chr6	85660949	85661134	ENSG00000203875.10|SNHG5|lncRNA|chr6:85660949:85661134:-	0	-
#Deleted in new
chr6	85660949	85661355	ENSG00000203875.10|SNHG5|lncRNA|chr6:85660949:85661355:-	0	-
#Deleted in new
chr6	85660991	85661134	ENSG00000203875.10|SNHG5|lncRNA|chr6:85660991:85661134:-	0	-
#Deleted in new
chr6	85663673	85663726	ENSG00000203875.10|SNHG5|lncRNA|chr6:85663673:85663726:-	0	-
#Deleted in new
chr6	85663686	85663726	ENSG00000203875.10|SNHG5|lncRNA|chr6:85663686:85663726:-	0	-
#Deleted in new
chr6	85665559	85666147	ENSG00000203875.10|SNHG5|lncRNA|chr6:85665559:85666147:-	0	-
#Deleted in new
chr6	85665641	85666147	ENSG00000203875.10|SNHG5|lncRNA|chr6:85665641:85666147:-	0	-
#Deleted in new
chr6	85665771	85666147	ENSG00000203875.10|SNHG5|lncRNA|chr6:85665771:85666147:-	0	-
#Deleted in new
chr6	85665851	85666147	ENSG00000203875.10|SNHG5|lncRNA|chr6:85665851:85666147:-	0	-
#Deleted in new
chr6	85666003	85666147	ENSG00000203875.10|SNHG5|lncRNA|chr6:85666003:85666147:-	0	-
#Partially deleted in new
chr6	85676989	85677191	ENSG00000203875.10|SNHG5|lncRNA|chr6:85676989:85677191:-	0	-
#Deleted in new
chr6	86937305	86937823	ENSG00000168830.7|HTR1E|pc|chr6:86937305:86937823:+	0	+
#Deleted in new
chr6	87086516	87086609	ENSG00000135346.8|CGA|pc|chr6:87086516:87086609:-	0	-
#Deleted in new
chr6	87088868	87089167	ENSG00000135346.8|CGA|pc|chr6:87088868:87089167:-	0	-
#Deleted in new
chr6	87155190	87155361	ENSG00000188994.12|ZNF292|pc|chr6:87155190:87155361:+	0	+
#Deleted in new
chr6	87169673	87170364	ENSG00000188994.12|ZNF292|pc|chr6:87169673:87170364:+	0	+
#Deleted in new
chr6	87213713	87213865	ENSG00000188994.12|ZNF292|pc|chr6:87213713:87213865:+	0	+
#Deleted in new
chr6	87213737	87213865	ENSG00000188994.12|ZNF292|pc|chr6:87213737:87213865:+	0	+
#Deleted in new
chr6	87222769	87222867	ENSG00000188994.12|ZNF292|pc|chr6:87222769:87222867:+	0	+
#Deleted in new
chr6	87222769	87222904	ENSG00000188994.12|ZNF292|pc|chr6:87222769:87222904:+	0	+
#Deleted in new
chr6	87222769	87223936	ENSG00000188994.12|ZNF292|pc|chr6:87222769:87223936:+	0	+
#Deleted in new
chr6	87249311	87249466	ENSG00000188994.12|ZNF292|pc|chr6:87249311:87249466:+	0	+
#Deleted in new
chr6	87291932	87291988	ENSG00000164411.11|GJB7|pc|chr6:87291932:87291988:-	0	-
#Deleted in new
chr6	87322619	87322632	ENSG00000111850.10|SMIM8|pc|chr6:87322619:87322632:+	0	+
#Deleted in new
chr6	87322631	87322878	ENSG00000111850.10|SMIM8|pc|chr6:87322631:87322878:+	0	+
#Deleted in new
chr6	87322865	87323043	ENSG00000164411.11|GJB7|pc|chr6:87322865:87323043:-	0	-
#Deleted in new
chr6	87329137	87329241	ENSG00000164411.11|GJB7|pc|chr6:87329137:87329241:-	0	-
#Deleted in new
chr6	87329137	87329278	ENSG00000164411.11|GJB7|pc|chr6:87329137:87329278:-	0	-
#Deleted in new
chr6	87330691	87330712	ENSG00000111850.10|SMIM8|pc|chr6:87330691:87330712:+	0	+
#Partially deleted in new
chr6	87330691	87330950	ENSG00000111850.10|SMIM8|pc|chr6:87330691:87330950:+	0	+
#Split in new
chr6	87340115	87341759	ENSG00000111850.10|SMIM8|pc|chr6:87340115:87341759:+	0	+
#Split in new
chr6	87340115	87342322	ENSG00000111850.10|SMIM8|pc|chr6:87340115:87342322:+	0	+
#Split in new
chr6	87340115	87342328	ENSG00000111850.10|SMIM8|pc|chr6:87340115:87342328:+	0	+
#Partially deleted in new
chr6	87356830	87358605	ENSG00000279616.1|AL096817.1|lncRNA|chr6:87356830:87358605:+	0	+
#Deleted in new
chr6	87359092	87359201	ENSG00000203872.6|C6orf163|pc|chr6:87359092:87359201:+	0	+
#Deleted in new
chr6	87371592	87371712	ENSG00000111850.10|SMIM8|pc|chr6:87371592:87371712:+	0	+
#Deleted in new
chr6	87374687	87378602	ENSG00000111850.10|SMIM8|pc|chr6:87374687:87378602:+	0	+
#Deleted in new
chr6	87375461	87375710	ENSG00000111850.10|SMIM8|pc|chr6:87375461:87375710:+	0	+
#Deleted in new
chr6	87391779	87391835	ENSG00000111850.10|SMIM8|pc|chr6:87391779:87391835:+	0	+
#Deleted in new
chr6	87391779	87391877	ENSG00000111850.10|SMIM8|pc|chr6:87391779:87391877:+	0	+
#Deleted in new
chr6	87392724	87392842	ENSG00000111850.10|SMIM8|pc|chr6:87392724:87392842:+	0	+
#Deleted in new
chr6	87397121	87398377	ENSG00000111850.10|SMIM8|pc|chr6:87397121:87398377:+	0	+
#Deleted in new
chr6	87398242	87398377	ENSG00000111850.10|SMIM8|pc|chr6:87398242:87398377:+	0	+
#Deleted in new
chr6	87399433	87399599	ENSG00000111850.10|SMIM8|pc|chr6:87399433:87399599:+	0	+
#Deleted in new
chr6	87399433	87399741	ENSG00000111850.10|SMIM8|pc|chr6:87399433:87399741:+	0	+
#Deleted in new
chr6	87399437	87399749	ENSG00000111850.10|SMIM8|pc|chr6:87399437:87399749:+	0	+
#Partially deleted in new
chr6	87434859	87436057	ENSG00000272514.5|CFAP206|pc|chr6:87434859:87436057:+	0	+
#Deleted in new
chr6	87436690	87436810	ENSG00000213204.8|AL049697.1|pc|chr6:87436690:87436810:+	0	+
#Deleted in new
chr6	87436732	87436806	ENSG00000213204.8|AL049697.1|pc|chr6:87436732:87436806:+	0	+
#Deleted in new
chr6	87470622	87470713	ENSG00000164414.17|SLC35A1|pc|chr6:87470622:87470713:+	0	+
#Deleted in new
chr6	87488057	87488102	ENSG00000213204.8|AL049697.1|pc|chr6:87488057:87488102:+	0	+
#Deleted in new
chr6	87496074	87496140	ENSG00000213204.8|AL049697.1|pc|chr6:87496074:87496140:+	0	+
#Deleted in new
chr6	87515832	87515946	ENSG00000146282.17|RARS2|pc|chr6:87515832:87515946:-	0	-
#Deleted in new
chr6	87564543	87564662	ENSG00000146282.17|RARS2|pc|chr6:87564543:87564662:-	0	-
#Deleted in new
chr6	87594526	87594613	ENSG00000135336.14|ORC3|pc|chr6:87594526:87594613:+	0	+
#Deleted in new
chr6	87595171	87595437	ENSG00000135336.14|ORC3|pc|chr6:87595171:87595437:+	0	+
#Deleted in new
chr6	87650929	87651392	ENSG00000135336.14|ORC3|pc|chr6:87650929:87651392:+	0	+
#Deleted in new
chr6	88420943	88421033	ENSG00000234426.1|AL139042.1|lncRNA|chr6:88420943:88421033:-	0	-
#Partially deleted in new
chr6	88677993	88678419	ENSG00000111880.15|RNGTT|pc|chr6:88677993:88678419:-	0	-
#Deleted in new
chr6	88964526	88966587	ENSG00000280277.1|AL079342.3|lncRNA|chr6:88964526:88966587:+	0	+
#Partially deleted in new
chr6	89081835	89082735	ENSG00000146278.10|PNRC1|pc|chr6:89081835:89082735:+	0	+
#Partially deleted in new
chr6	89205470	89205744	ENSG00000146276.11|GABRR1|pc|chr6:89205470:89205744:-	0	-
#Deleted in new
chr6	89221274	89221446	ENSG00000146276.11|GABRR1|pc|chr6:89221274:89221446:-	0	-
#Deleted in new
chr6	89221274	89221449	ENSG00000146276.11|GABRR1|pc|chr6:89221274:89221449:-	0	-
#Deleted in new
chr6	89231215	89231278	ENSG00000146276.11|GABRR1|pc|chr6:89231215:89231278:-	0	-
#Deleted in new
chr6	89504956	89505003	ENSG00000135299.16|ANKRD6|pc|chr6:89504956:89505003:+	0	+
#Deleted in new
chr6	89560874	89561530	ENSG00000237027.1|AL159174.1|lncRNA|chr6:89560874:89561530:-	0	-
#Deleted in new
chr6	89619596	89620204	ENSG00000083099.10|LYRM2|pc|chr6:89619596:89620204:-	0	-
#Split in new
chr6	89632223	89637353	ENSG00000083099.10|LYRM2|pc|chr6:89632223:89637353:-	0	-
#Split in new
chr6	89636856	89637353	ENSG00000083099.10|LYRM2|pc|chr6:89636856:89637353:-	0	-
#Split in new
chr6	89636912	89637353	ENSG00000083099.10|LYRM2|pc|chr6:89636912:89637353:-	0	-
#Deleted in new
chr6	89638271	89638401	ENSG00000083099.10|LYRM2|pc|chr6:89638271:89638401:-	0	-
#Deleted in new
chr6	89638271	89638432	ENSG00000083099.10|LYRM2|pc|chr6:89638271:89638432:-	0	-
#Deleted in new
chr6	89638271	89638497	ENSG00000083099.10|LYRM2|pc|chr6:89638271:89638497:-	0	-
#Deleted in new
chr6	89638403	89638482	ENSG00000083099.10|LYRM2|pc|chr6:89638403:89638482:-	0	-
#Deleted in new
chr6	89638403	89638483	ENSG00000083099.10|LYRM2|pc|chr6:89638403:89638483:-	0	-
#Deleted in new
chr6	89638403	89638486	ENSG00000083099.10|LYRM2|pc|chr6:89638403:89638486:-	0	-
#Partially deleted in new
chr6	89920195	89920315	ENSG00000135355.4|GJA10|pc|chr6:89920195:89920315:+	0	+
#Partially deleted in new
chr6	90271848	90271941	ENSG00000112182.14|BACH2|pc|chr6:90271848:90271941:-	0	-
#Deleted in new
chr6	90345218	90345391	ENSG00000260271.1|AL132996.1|lncRNA|chr6:90345218:90345391:+	0	+
#Deleted in new
chr6	90345975	90346121	ENSG00000260271.1|AL132996.1|lncRNA|chr6:90345975:90346121:+	0	+
#Deleted in new
chr6	90346656	90346790	ENSG00000260271.1|AL132996.1|lncRNA|chr6:90346656:90346790:+	0	+
#Deleted in new
chr6	908974	909006	ENSG00000276687.1|AL356130.1|lncRNA|chr6:908974:909006:-	0	-
#Deleted in new
chr6	91392203	91392327	ENSG00000224605.1|AL080284.1|lncRNA|chr6:91392203:91392327:-	0	-
#Deleted in new
chr6	9161722	9161777	ENSG00000225775.1|AL137220.1|lncRNA|chr6:9161722:9161777:-	0	-
#Deleted in new
chr6	91629914	91630229	ENSG00000224944.1|CASC6|lncRNA|chr6:91629914:91630229:-	0	-
#Deleted in new
chr6	91685047	91685192	ENSG00000224944.1|CASC6|lncRNA|chr6:91685047:91685192:-	0	-
#Deleted in new
chr6	92387840	92388827	ENSG00000261038.1|AL133457.1|lncRNA|chr6:92387840:92388827:-	0	-
#Deleted in new
chr6	92723321	92723829	ENSG00000220908.2|LINC02531|lncRNA|chr6:92723321:92723829:-	0	-
#Deleted in new
chr6	93811824	93813036	ENSG00000280451.1|AL356094.1|lncRNA|chr6:93811824:93813036:+	0	+
#Deleted in new
chr6	94163919	94163949	ENSG00000231143.1|AL157378.1|lncRNA|chr6:94163919:94163949:+	0	+
#Partially deleted in new
chr6	94397663	94398829	ENSG00000279403.1|AL078595.3|lncRNA|chr6:94397663:94398829:+	0	+
#Deleted in new
chr6	95588221	95588261	ENSG00000172469.15|MANEA|pc|chr6:95588221:95588261:+	0	+
#Deleted in new
chr6	95589999	95590173	ENSG00000172469.15|MANEA|pc|chr6:95589999:95590173:+	0	+
#Deleted in new
chr6	962135	962272	ENSG00000278343.1|AL356130.2|lncRNA|chr6:962135:962272:-	0	-
#Deleted in new
chr6	96358373	96358430	ENSG00000233797.1|UFL1-AS1|lncRNA|chr6:96358373:96358430:-	0	-
#Deleted in new
chr6	96361469	96361587	ENSG00000233797.1|UFL1-AS1|lncRNA|chr6:96361469:96361587:-	0	-
#Deleted in new
chr6	96364770	96364807	ENSG00000233797.1|UFL1-AS1|lncRNA|chr6:96364770:96364807:-	0	-
#Deleted in new
chr6	96398908	96399034	ENSG00000233797.1|UFL1-AS1|lncRNA|chr6:96398908:96399034:-	0	-
#Deleted in new
chr6	96519294	96519375	ENSG00000233797.1|UFL1-AS1|lncRNA|chr6:96519294:96519375:-	0	-
#Deleted in new
chr6	96521640	96521669	ENSG00000233797.1|UFL1-AS1|lncRNA|chr6:96521640:96521669:-	0	-
#Deleted in new
chr6	97010198	97010265	ENSG00000186231.16|KLHL32|pc|chr6:97010198:97010265:+	0	+
#Partially deleted in new
chr6	97258662	97261974	ENSG00000146263.11|MMS22L|pc|chr6:97258662:97261974:-	0	-
#Deleted in new
chr6	97259371	97259669	ENSG00000146263.11|MMS22L|pc|chr6:97259371:97259669:-	0	-
#Deleted in new
chr6	97259662	97259669	ENSG00000146263.11|MMS22L|pc|chr6:97259662:97259669:-	0	-
#Partially deleted in new
chr6	97263334	97268002	ENSG00000146263.11|MMS22L|pc|chr6:97263334:97268002:-	0	-
#Partially deleted in new
chr6	97265719	97268002	ENSG00000146263.11|MMS22L|pc|chr6:97265719:97268002:-	0	-
#Partially deleted in new
chr6	97282986	97283176	ENSG00000146263.11|MMS22L|pc|chr6:97282986:97283176:-	0	-
#Partially deleted in new
chr6	97283044	97283188	ENSG00000146263.11|MMS22L|pc|chr6:97283044:97283188:-	0	-
#Deleted in new
chr6	97373847	97373914	ENSG00000271860.6|AL589740.1|lncRNA|chr6:97373847:97373914:+	0	+
#Deleted in new
chr6	97423468	97423566	ENSG00000271860.6|AL589740.1|lncRNA|chr6:97423468:97423566:+	0	+
#Deleted in new
chr6	97448111	97448218	ENSG00000271860.6|AL589740.1|lncRNA|chr6:97448111:97448218:+	0	+
#Deleted in new
chr6	97479170	97479219	ENSG00000271860.6|AL589740.1|lncRNA|chr6:97479170:97479219:+	0	+
#Deleted in new
chr6	97612167	97612308	ENSG00000271860.6|AL589740.1|lncRNA|chr6:97612167:97612308:+	0	+
#Deleted in new
chr6	97612167	97612339	ENSG00000271860.6|AL589740.1|lncRNA|chr6:97612167:97612339:+	0	+
#Deleted in new
chr6	97616835	97616931	ENSG00000271860.6|AL589740.1|lncRNA|chr6:97616835:97616931:+	0	+
#Partially deleted in new
chr6	97710952	97711198	ENSG00000226207.1|AL080316.1|lncRNA|chr6:97710952:97711198:-	0	-
#Deleted in new
chr6	97712336	97712492	ENSG00000226207.1|AL080316.1|lncRNA|chr6:97712336:97712492:-	0	-
#Partially deleted in new
chr6	97938788	97938973	ENSG00000271860.6|AL589740.1|lncRNA|chr6:97938788:97938973:+	0	+
#Deleted in new
chr6	97969405	97969466	ENSG00000271860.6|AL589740.1|lncRNA|chr6:97969405:97969466:+	0	+
#Deleted in new
chr6	98076066	98076145	ENSG00000271860.6|AL589740.1|lncRNA|chr6:98076066:98076145:+	0	+
#Deleted in new
chr6	98210019	98210723	ENSG00000236920.2|AL590727.1|lncRNA|chr6:98210019:98210723:-	0	-
#Deleted in new
chr6	98294186	98294310	ENSG00000271860.6|AL589740.1|lncRNA|chr6:98294186:98294310:+	0	+
#Deleted in new
chr6	98398470	98398771	ENSG00000271860.6|AL589740.1|lncRNA|chr6:98398470:98398771:+	0	+
#Deleted in new
chr6	98398470	98398863	ENSG00000271860.6|AL589740.1|lncRNA|chr6:98398470:98398863:+	0	+
#Deleted in new
chr6	98398470	98399872	ENSG00000271860.6|AL589740.1|lncRNA|chr6:98398470:98399872:+	0	+
#Deleted in new
chr6	9850397	9850469	ENSG00000181355.20|OFCC1|pc|chr6:9850397:9850469:-	0	-
#Deleted in new
chr6	98934761	98934879	ENSG00000112234.8|FBXL4|pc|chr6:98934761:98934879:-	0	-
#Deleted in new
chr6	9903372	9903406	ENSG00000181355.20|OFCC1|pc|chr6:9903372:9903406:-	0	-
#Deleted in new
chr6	9903372	9903441	ENSG00000181355.20|OFCC1|pc|chr6:9903372:9903441:-	0	-
#Deleted in new
chr6	99383007	99383130	ENSG00000132423.11|COQ3|pc|chr6:99383007:99383130:-	0	-
#Deleted in new
chr6	99415568	99415747	ENSG00000132424.14|PNISR|pc|chr6:99415568:99415747:-	0	-
#Deleted in new
chr6	99416348	99416428	ENSG00000132424.14|PNISR|pc|chr6:99416348:99416428:-	0	-
#Deleted in new
chr6	9943128	9943333	ENSG00000181355.20|OFCC1|pc|chr6:9943128:9943333:-	0	-
#Deleted in new
chr6	99462463	99462815	ENSG00000123552.17|USP45|pc|chr6:99462463:99462815:-	0	-
#Deleted in new
chr6	99462595	99462815	ENSG00000123552.17|USP45|pc|chr6:99462595:99462815:-	0	-
#Deleted in new
chr6	99462597	99462815	ENSG00000123552.17|USP45|pc|chr6:99462597:99462815:-	0	-
#Deleted in new
chr6	9947426	9947462	ENSG00000181355.20|OFCC1|pc|chr6:9947426:9947462:-	0	-
#Deleted in new
chr6	99501742	99502009	ENSG00000123552.17|USP45|pc|chr6:99501742:99502009:-	0	-
#Deleted in new
chr6	99526063	99526109	ENSG00000228439.5|TSTD3|pc|chr6:99526063:99526109:+	0	+
#Deleted in new
chr6	99566897	99567038	ENSG00000112237.12|CCNC|pc|chr6:99566897:99567038:-	0	-
#Deleted in new
chr6	99587610	99589898	ENSG00000279170.1|AL137784.3|lncRNA|chr6:99587610:99589898:+	0	+
#Partially deleted in new
chr6	99919909	99921255	ENSG00000152034.10|MCHR2|pc|chr6:99919909:99921255:-	0	-
#Partially deleted in new
chr6	99920751	99921255	ENSG00000152034.10|MCHR2|pc|chr6:99920751:99921255:-	0	-
#Deleted in new
chr6	99934397	99934517	ENSG00000152034.10|MCHR2|pc|chr6:99934397:99934517:-	0	-
#Deleted in new
chr6	99942948	99943143	ENSG00000152034.10|MCHR2|pc|chr6:99942948:99943143:-	0	-
#Deleted in new
chr6	99947761	99947971	ENSG00000152034.10|MCHR2|pc|chr6:99947761:99947971:-	0	-
#Deleted in new
chr6	99955965	99956174	ENSG00000152034.10|MCHR2|pc|chr6:99955965:99956174:-	0	-
#Deleted in new
chr6	99993935	99994223	ENSG00000152034.10|MCHR2|pc|chr6:99993935:99994223:-	0	-
#Deleted in new
chr6	99993943	99994001	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:99993943:99994001:+	0	+
#Deleted in new
chr6	99994055	99994204	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:99994055:99994204:+	0	+
#Deleted in new
chr6	99994065	99994204	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:99994065:99994204:+	0	+
#Deleted in new
chr6	99994174	99994247	ENSG00000152034.10|MCHR2|pc|chr6:99994174:99994247:-	0	-
#Deleted in new
chr6	99996161	99996330	ENSG00000229315.6|MCHR2-AS1|lncRNA|chr6:99996161:99996330:+	0	+
#Deleted in new
chr7	100019230	100019349	ENSG00000106261.16|ZKSCAN1|pc|chr7:100019230:100019349:+	0	+
#Deleted in new
chr7	100078681	100079167	ENSG00000166526.16|ZNF3|pc|chr7:100078681:100079167:-	0	-
#Deleted in new
chr7	100082300	100082548	ENSG00000166526.16|ZNF3|pc|chr7:100082300:100082548:-	0	-
#Partially deleted in new
chr7	100102060	100102393	ENSG00000221838.9|AP4M1|pc|chr7:100102060:100102393:+	0	+
#Deleted in new
chr7	100102085	100102393	ENSG00000221838.9|AP4M1|pc|chr7:100102085:100102393:+	0	+
#Deleted in new
chr7	100102245	100102393	ENSG00000221838.9|AP4M1|pc|chr7:100102245:100102393:+	0	+
#Deleted in new
chr7	100103227	100103296	ENSG00000221838.9|AP4M1|pc|chr7:100103227:100103296:+	0	+
#Deleted in new
chr7	100115213	100115652	ENSG00000242798.1|AC073842.2|lncRNA|chr7:100115213:100115652:-	0	-
#Deleted in new
chr7	100116513	100116612	ENSG00000106290.14|TAF6|pc|chr7:100116513:100116612:-	0	-
#Deleted in new
chr7	100116513	100116633	ENSG00000106290.14|TAF6|pc|chr7:100116513:100116633:-	0	-
#Deleted in new
chr7	100118395	100118649	ENSG00000106290.14|TAF6|pc|chr7:100118395:100118649:-	0	-
#Deleted in new
chr7	100118517	100118649	ENSG00000106290.14|TAF6|pc|chr7:100118517:100118649:-	0	-
#Deleted in new
chr7	100121160	100121399	ENSG00000166997.7|CNPY4|pc|chr7:100121160:100121399:+	0	+
#Partially deleted in new
chr7	100126693	100127064	ENSG00000214309.4|MBLAC1|pc|chr7:100126693:100127064:+	0	+
#Deleted in new
chr7	100130963	100131037	ENSG00000235077.1|AC073842.1|lncRNA|chr7:100130963:100131037:+	0	+
#Deleted in new
chr7	100181377	100181540	ENSG00000066923.17|STAG3|pc|chr7:100181377:100181540:+	0	+
#Deleted in new
chr7	100211934	100211994	ENSG00000239521.7|GATS|pc|chr7:100211934:100211994:-	0	-
#Partially deleted in new
chr7	100212952	100213133	ENSG00000239521.7|GATS|pc|chr7:100212952:100213133:-	0	-
#Deleted in new
chr7	100218240	100218641	ENSG00000213413.2|PVRIG|pc|chr7:100218240:100218641:+	0	+
#Partially deleted in new
chr7	100218616	100220028	ENSG00000066923.17|STAG3|pc|chr7:100218616:100220028:+	0	+
#Deleted in new
chr7	100219235	100219400	ENSG00000213413.2|PVRIG|pc|chr7:100219235:100219400:+	0	+
#Deleted in new
chr7	100219248	100219335	ENSG00000213413.2|PVRIG|pc|chr7:100219248:100219335:+	0	+
#Deleted in new
chr7	100246461	100246548	ENSG00000239521.7|GATS|pc|chr7:100246461:100246548:-	0	-
#Deleted in new
chr7	100349730	100349887	ENSG00000272752.6|STAG3L5P-PVRIG2P-PILRB|lncRNA|chr7:100349730:100349887:+	0	+
#Deleted in new
chr7	100349798	100349887	ENSG00000272752.6|STAG3L5P-PVRIG2P-PILRB|lncRNA|chr7:100349798:100349887:+	0	+
#Deleted in new
chr7	100351251	100351410	ENSG00000272752.6|STAG3L5P-PVRIG2P-PILRB|lncRNA|chr7:100351251:100351410:+	0	+
#Deleted in new
chr7	100351255	100351410	ENSG00000272752.6|STAG3L5P-PVRIG2P-PILRB|lncRNA|chr7:100351255:100351410:+	0	+
#Deleted in new
chr7	100355142	100355240	ENSG00000121716.20|PILRB|pc|chr7:100355142:100355240:+	0	+
#Deleted in new
chr7	100355142	100355240	ENSG00000272752.6|STAG3L5P-PVRIG2P-PILRB|lncRNA|chr7:100355142:100355240:+	0	+
#Split in new
chr7	100355142	100358015	ENSG00000121716.20|PILRB|pc|chr7:100355142:100358015:+	0	+
#Deleted in new
chr7	100356749	100356883	ENSG00000121716.20|PILRB|pc|chr7:100356749:100356883:+	0	+
#Deleted in new
chr7	100356749	100356883	ENSG00000272752.6|STAG3L5P-PVRIG2P-PILRB|lncRNA|chr7:100356749:100356883:+	0	+
#Deleted in new
chr7	100356749	100356938	ENSG00000121716.20|PILRB|pc|chr7:100356749:100356938:+	0	+
#Deleted in new
chr7	100357379	100357535	ENSG00000121716.20|PILRB|pc|chr7:100357379:100357535:+	0	+
#Deleted in new
chr7	100359336	100359537	ENSG00000121716.20|PILRB|pc|chr7:100359336:100359537:+	0	+
#Deleted in new
chr7	100359336	100359537	ENSG00000272752.6|STAG3L5P-PVRIG2P-PILRB|lncRNA|chr7:100359336:100359537:+	0	+
#Deleted in new
chr7	100367348	100367398	ENSG00000121716.20|PILRB|pc|chr7:100367348:100367398:+	0	+
#Deleted in new
chr7	100367348	100367663	ENSG00000272752.6|STAG3L5P-PVRIG2P-PILRB|lncRNA|chr7:100367348:100367663:+	0	+
#Deleted in new
chr7	100367348	100367733	ENSG00000121716.20|PILRB|pc|chr7:100367348:100367733:+	0	+
#Deleted in new
chr7	100367348	100367831	ENSG00000272752.6|STAG3L5P-PVRIG2P-PILRB|lncRNA|chr7:100367348:100367831:+	0	+
#Deleted in new
chr7	100367529	100367617	ENSG00000085514.15|PILRA|pc|chr7:100367529:100367617:+	0	+
#Duplicated in new
chr7	100389887	100390106	ENSG00000085514.15|PILRA|pc|chr7:100389887:100390106:+	0	+
#Deleted in new
chr7	100438380	100438504	ENSG00000240211.1|AC092849.1|lncRNA|chr7:100438380:100438504:+	0	+
#Deleted in new
chr7	100509716	100509801	ENSG00000225807.1|AC069281.1|lncRNA|chr7:100509716:100509801:+	0	+
#Deleted in new
chr7	100516592	100516756	ENSG00000225807.1|AC069281.1|lncRNA|chr7:100516592:100516756:+	0	+
#Deleted in new
chr7	100519375	100519498	ENSG00000225807.1|AC069281.1|lncRNA|chr7:100519375:100519498:+	0	+
#Deleted in new
chr7	100519883	100519926	ENSG00000225807.1|AC069281.1|lncRNA|chr7:100519883:100519926:+	0	+
#Deleted in new
chr7	100599670	100599802	ENSG00000224729.5|PCOLCE-AS1|lncRNA|chr7:100599670:100599802:-	0	-
#Partially deleted in new
chr7	100856793	100858942	ENSG00000146828.17|SLC12A9|pc|chr7:100856793:100858942:+	0	+
#Duplicated in new
chr7	100860149	100860464	ENSG00000146828.17|SLC12A9|pc|chr7:100860149:100860464:+	0	+
#Deleted in new
chr7	100871060	100871177	ENSG00000087077.13|TRIP6|pc|chr7:100871060:100871177:+	0	+
#Deleted in new
chr7	100880695	100880769	ENSG00000087087.19|SRRT|pc|chr7:100880695:100880769:+	0	+
#Deleted in new
chr7	100964334	100964456	ENSG00000274993.1|AC254629.1|lncRNA|chr7:100964334:100964456:-	0	-
#Deleted in new
chr7	100972117	100972152	ENSG00000205277.9|MUC12|pc|chr7:100972117:100972152:+	0	+
#Deleted in new
chr7	100972858	100973068	ENSG00000205277.9|MUC12|pc|chr7:100972858:100973068:+	0	+
#Deleted in new
chr7	100981369	100981507	ENSG00000205277.9|MUC12|pc|chr7:100981369:100981507:+	0	+
#Split in new
chr7	100990584	101005519	ENSG00000205277.9|MUC12|pc|chr7:100990584:101005519:+	0	+
#Split in new
chr7	100990630	101005519	ENSG00000205277.9|MUC12|pc|chr7:100990630:101005519:+	0	+
#Deleted in new
chr7	101014319	101014439	ENSG00000227053.1|AC105446.1|lncRNA|chr7:101014319:101014439:-	0	-
#Deleted in new
chr7	101014324	101014439	ENSG00000227053.1|AC105446.1|lncRNA|chr7:101014324:101014439:-	0	-
#Deleted in new
chr7	101043710	101043819	ENSG00000169876.13|MUC17|pc|chr7:101043710:101043819:+	0	+
#Partially deleted in new
chr7	101086784	101087168	ENSG00000169871.12|TRIM56|pc|chr7:101086784:101087168:+	0	+
#Deleted in new
chr7	101087005	101087168	ENSG00000169871.12|TRIM56|pc|chr7:101087005:101087168:+	0	+
#Deleted in new
chr7	101090170	101090624	ENSG00000169871.12|TRIM56|pc|chr7:101090170:101090624:+	0	+
#Deleted in new
chr7	101091637	101091736	ENSG00000169871.12|TRIM56|pc|chr7:101091637:101091736:+	0	+
#Deleted in new
chr7	101161491	101161596	ENSG00000106367.13|AP1S1|pc|chr7:101161491:101161596:+	0	+
#Partially deleted in new
chr7	101170492	101172651	ENSG00000167011.8|NAT16|pc|chr7:101170492:101172651:-	0	-
#Deleted in new
chr7	101171914	101172651	ENSG00000167011.8|NAT16|pc|chr7:101171914:101172651:-	0	-
#Deleted in new
chr7	101173295	101173520	ENSG00000167011.8|NAT16|pc|chr7:101173295:101173520:-	0	-
#Deleted in new
chr7	101173363	101173520	ENSG00000167011.8|NAT16|pc|chr7:101173363:101173520:-	0	-
#Deleted in new
chr7	101173699	101174811	ENSG00000167011.8|NAT16|pc|chr7:101173699:101174811:-	0	-
#Deleted in new
chr7	101174495	101174811	ENSG00000167011.8|NAT16|pc|chr7:101174495:101174811:-	0	-
#Deleted in new
chr7	101180041	101180215	ENSG00000167011.8|NAT16|pc|chr7:101180041:101180215:-	0	-
#Deleted in new
chr7	101180041	101180276	ENSG00000167011.8|NAT16|pc|chr7:101180041:101180276:-	0	-
#Partially deleted in new
chr7	101195006	101196100	ENSG00000106384.10|MOGAT3|pc|chr7:101195006:101196100:-	0	-
#Deleted in new
chr7	101200233	101200304	ENSG00000106384.10|MOGAT3|pc|chr7:101200233:101200304:-	0	-
#Partially deleted in new
chr7	101218279	101218420	ENSG00000106397.11|PLOD3|pc|chr7:101218279:101218420:-	0	-
#Deleted in new
chr7	101218318	101218485	ENSG00000106400.11|ZNHIT1|pc|chr7:101218318:101218485:+	0	+
#Partially deleted in new
chr7	101218318	101221796	ENSG00000106400.11|ZNHIT1|pc|chr7:101218318:101221796:+	0	+
#Partially deleted in new
chr7	101220380	101222774	ENSG00000106400.11|ZNHIT1|pc|chr7:101220380:101222774:+	0	+
#Deleted in new
chr7	101241125	101241177	ENSG00000214253.8|FIS1|pc|chr7:101241125:101241177:-	0	-
#Deleted in new
chr7	101241589	101241785	ENSG00000214253.8|FIS1|pc|chr7:101241589:101241785:-	0	-
#Deleted in new
chr7	101299612	101299866	ENSG00000232301.1|LNCPRESS1|lncRNA|chr7:101299612:101299866:+	0	+
#Deleted in new
chr7	101300768	101301270	ENSG00000232301.1|LNCPRESS1|lncRNA|chr7:101300768:101301270:+	0	+
#Deleted in new
chr7	101308345	101308548	ENSG00000232445.1|AC006329.1|lncRNA|chr7:101308345:101308548:+	0	+
#Deleted in new
chr7	101310483	101310985	ENSG00000232445.1|AC006329.1|lncRNA|chr7:101310483:101310985:+	0	+
#Partially deleted in new
chr7	101313366	101315282	ENSG00000128581.15|IFT22|pc|chr7:101313366:101315282:-	0	-
#Deleted in new
chr7	101313693	101314105	ENSG00000128581.15|IFT22|pc|chr7:101313693:101314105:-	0	-
#Partially deleted in new
chr7	101314174	101315282	ENSG00000128581.15|IFT22|pc|chr7:101314174:101315282:-	0	-
#Partially deleted in new
chr7	101314403	101315282	ENSG00000128581.15|IFT22|pc|chr7:101314403:101315282:-	0	-
#Partially deleted in new
chr7	101315492	101316542	ENSG00000128581.15|IFT22|pc|chr7:101315492:101316542:-	0	-
#Partially deleted in new
chr7	101318123	101319032	ENSG00000128581.15|IFT22|pc|chr7:101318123:101319032:-	0	-
#Deleted in new
chr7	101321426	101321499	ENSG00000128581.15|IFT22|pc|chr7:101321426:101321499:-	0	-
#Deleted in new
chr7	101562778	101563087	ENSG00000233123.1|LINC01007|lncRNA|chr7:101562778:101563087:-	0	-
#Partially deleted in new
chr7	101565305	101566633	ENSG00000233123.1|LINC01007|lncRNA|chr7:101565305:101566633:-	0	-
#Partially deleted in new
chr7	101565316	101567480	ENSG00000233123.1|LINC01007|lncRNA|chr7:101565316:101567480:-	0	-
#Deleted in new
chr7	101566485	101566633	ENSG00000233123.1|LINC01007|lncRNA|chr7:101566485:101566633:-	0	-
#Deleted in new
chr7	101568849	101568971	ENSG00000233123.1|LINC01007|lncRNA|chr7:101568849:101568971:-	0	-
#Deleted in new
chr7	101568849	101568976	ENSG00000233123.1|LINC01007|lncRNA|chr7:101568849:101568976:-	0	-
#Deleted in new
chr7	101568849	101569006	ENSG00000233123.1|LINC01007|lncRNA|chr7:101568849:101569006:-	0	-
#Deleted in new
chr7	101623919	101624021	ENSG00000106436.4|MYL10|pc|chr7:101623919:101624021:-	0	-
#Deleted in new
chr7	101629040	101629296	ENSG00000106436.4|MYL10|pc|chr7:101629040:101629296:-	0	-
#Partially deleted in new
chr7	102115206	102115670	ENSG00000257923.9|CUX1|pc|chr7:102115206:102115670:+	0	+
#Deleted in new
chr7	102125527	102125778	ENSG00000257923.9|CUX1|pc|chr7:102125527:102125778:+	0	+
#Deleted in new
chr7	102153354	102154056	ENSG00000261535.1|AC005086.1|lncRNA|chr7:102153354:102154056:-	0	-
#Deleted in new
chr7	102154364	102154463	ENSG00000261535.1|AC005086.1|lncRNA|chr7:102154364:102154463:-	0	-
#Deleted in new
chr7	102429985	102430134	ENSG00000239480.1|AC073517.1|lncRNA|chr7:102429985:102430134:-	0	-
#Deleted in new
chr7	102433105	102433355	ENSG00000160991.15|ORAI2|pc|chr7:102433105:102433355:+	0	+
#Partially deleted in new
chr7	102446512	102448716	ENSG00000160991.15|ORAI2|pc|chr7:102446512:102448716:+	0	+
#Partially deleted in new
chr7	102446512	102448732	ENSG00000160991.15|ORAI2|pc|chr7:102446512:102448732:+	0	+
#Partially deleted in new
chr7	102446512	102451609	ENSG00000160991.15|ORAI2|pc|chr7:102446512:102451609:+	0	+
#Partially deleted in new
chr7	102446512	102456821	ENSG00000160991.15|ORAI2|pc|chr7:102446512:102456821:+	0	+
#Partially deleted in new
chr7	1024501	1027027	ENSG00000146540.14|C7orf50|pc|chr7:1024501:1027027:-	0	-
#Deleted in new
chr7	102465531	102465589	ENSG00000161036.12|LRWD1|pc|chr7:102465531:102465589:+	0	+
#Deleted in new
chr7	102465531	102465627	ENSG00000161036.12|LRWD1|pc|chr7:102465531:102465627:+	0	+
#Partially deleted in new
chr7	102482444	102483713	ENSG00000170667.14|RASA4B|pc|chr7:102482444:102483713:-	0	-
#Deleted in new
chr7	102525098	102525261	ENSG00000272949.1|AC093668.2|lncRNA|chr7:102525098:102525261:-	0	-
#Deleted in new
chr7	102544705	102544776	ENSG00000168255.19|POLR2J3|pc|chr7:102544705:102544776:-	0	-
#Deleted in new
chr7	102545302	102545420	ENSG00000168255.19|POLR2J3|pc|chr7:102545302:102545420:-	0	-
#Partially deleted in new
chr7	102562655	102567083	ENSG00000168255.19|POLR2J3|pc|chr7:102562655:102567083:-	0	-
#Deleted in new
chr7	102565975	102567083	ENSG00000168255.19|POLR2J3|pc|chr7:102565975:102567083:-	0	-
#Partially deleted in new
chr7	102566287	102568184	ENSG00000168255.19|POLR2J3|pc|chr7:102566287:102568184:-	0	-
#Deleted in new
chr7	102566581	102566629	ENSG00000168255.19|POLR2J3|pc|chr7:102566581:102566629:-	0	-
#Deleted in new
chr7	102566581	102566658	ENSG00000168255.19|POLR2J3|pc|chr7:102566581:102566658:-	0	-
#Deleted in new
chr7	102566581	102566736	ENSG00000168255.19|POLR2J3|pc|chr7:102566581:102566736:-	0	-
#Deleted in new
chr7	102566581	102566736	ENSG00000270249.1|AC093668.1|pc|chr7:102566581:102566736:-	0	-
#Deleted in new
chr7	102566626	102566736	ENSG00000168255.19|POLR2J3|pc|chr7:102566626:102566736:-	0	-
#Deleted in new
chr7	102566996	102567070	ENSG00000168255.19|POLR2J3|pc|chr7:102566996:102567070:-	0	-
#Deleted in new
chr7	102566996	102567083	ENSG00000168255.19|POLR2J3|pc|chr7:102566996:102567083:-	0	-
#Deleted in new
chr7	102566996	102567083	ENSG00000270249.1|AC093668.1|pc|chr7:102566996:102567083:-	0	-
#Partially deleted in new
chr7	102566996	102568184	ENSG00000168255.19|POLR2J3|pc|chr7:102566996:102568184:-	0	-
#Deleted in new
chr7	102567050	102567083	ENSG00000168255.19|POLR2J3|pc|chr7:102567050:102567083:-	0	-
#Partially deleted in new
chr7	102567483	102568184	ENSG00000168255.19|POLR2J3|pc|chr7:102567483:102568184:-	0	-
#Deleted in new
chr7	102569199	102569543	ENSG00000168255.19|POLR2J3|pc|chr7:102569199:102569543:-	0	-
#Deleted in new
chr7	102573806	102573917	ENSG00000105808.17|RASA4|pc|chr7:102573806:102573917:-	0	-
#Deleted in new
chr7	102579103	102579284	ENSG00000279168.2|AC105052.3|lncRNA|chr7:102579103:102579284:-	0	-
#Deleted in new
chr7	102579424	102579796	ENSG00000105808.17|RASA4|pc|chr7:102579424:102579796:-	0	-
#Partially deleted in new
chr7	102579645	102582892	ENSG00000105808.17|RASA4|pc|chr7:102579645:102582892:-	0	-
#Deleted in new
chr7	102624188	102624351	ENSG00000205236.6|AC105052.1|pc|chr7:102624188:102624351:-	0	-
#Partially deleted in new
chr7	102665367	102667264	ENSG00000228049.7|POLR2J2|pc|chr7:102665367:102667264:-	0	-
#Deleted in new
chr7	102666076	102666163	ENSG00000267645.5|POLR2J2|pc|chr7:102666076:102666163:-	0	-
#Deleted in new
chr7	102666130	102666163	ENSG00000228049.7|POLR2J2|pc|chr7:102666130:102666163:-	0	-
#Deleted in new
chr7	102672878	102672989	ENSG00000279168.2|AC105052.3|lncRNA|chr7:102672878:102672989:-	0	-
#Deleted in new
chr7	102678346	102679295	ENSG00000279168.2|AC105052.3|lncRNA|chr7:102678346:102679295:-	0	-
#Deleted in new
chr7	102678484	102678856	ENSG00000279168.2|AC105052.3|lncRNA|chr7:102678484:102678856:-	0	-
#Deleted in new
chr7	102779716	102779810	ENSG00000222011.8|FAM185A|pc|chr7:102779716:102779810:+	0	+
#Deleted in new
chr7	102814333	102814416	ENSG00000161040.16|FBXL13|pc|chr7:102814333:102814416:-	0	-
#Partially deleted in new
chr7	102816189	102816271	ENSG00000161040.16|FBXL13|pc|chr7:102816189:102816271:-	0	-
#Deleted in new
chr7	102822382	102822440	ENSG00000161040.16|FBXL13|pc|chr7:102822382:102822440:-	0	-
#Deleted in new
chr7	1028257	1028339	ENSG00000146540.14|C7orf50|pc|chr7:1028257:1028339:-	0	-
#Deleted in new
chr7	1028257	1028352	ENSG00000146540.14|C7orf50|pc|chr7:1028257:1028352:-	0	-
#Deleted in new
chr7	1029024	1029086	ENSG00000225146.1|AC073957.1|lncRNA|chr7:1029024:1029086:+	0	+
#Deleted in new
chr7	102973149	102973219	ENSG00000161040.16|FBXL13|pc|chr7:102973149:102973219:-	0	-
#Deleted in new
chr7	102973436	102973771	ENSG00000230257.2|NFE4|pc|chr7:102973436:102973771:+	0	+
#Deleted in new
chr7	102973521	102973771	ENSG00000230257.2|NFE4|pc|chr7:102973521:102973771:+	0	+
#Deleted in new
chr7	102975890	102976230	ENSG00000230257.2|NFE4|pc|chr7:102975890:102976230:+	0	+
#Deleted in new
chr7	102978380	102978520	ENSG00000230257.2|NFE4|pc|chr7:102978380:102978520:+	0	+
#Deleted in new
chr7	102978380	102978667	ENSG00000230257.2|NFE4|pc|chr7:102978380:102978667:+	0	+
#Deleted in new
chr7	103030103	103030140	ENSG00000236226.1|AC073127.1|lncRNA|chr7:103030103:103030140:+	0	+
#Deleted in new
chr7	103031058	103031354	ENSG00000236226.1|AC073127.1|lncRNA|chr7:103031058:103031354:+	0	+
#Deleted in new
chr7	103046808	103047020	ENSG00000161040.16|FBXL13|pc|chr7:103046808:103047020:-	0	-
#Deleted in new
chr7	103046808	103047034	ENSG00000161040.16|FBXL13|pc|chr7:103046808:103047034:-	0	-
#Deleted in new
chr7	103050025	103050059	ENSG00000161040.16|FBXL13|pc|chr7:103050025:103050059:-	0	-
#Deleted in new
chr7	103081881	103081908	ENSG00000170632.13|ARMC10|pc|chr7:103081881:103081908:+	0	+
#Deleted in new
chr7	103083065	103083132	ENSG00000170632.13|ARMC10|pc|chr7:103083065:103083132:+	0	+
#Partially deleted in new
chr7	103086868	103086937	ENSG00000170632.13|ARMC10|pc|chr7:103086868:103086937:+	0	+
#Partially deleted in new
chr7	103095726	103097348	ENSG00000170632.13|ARMC10|pc|chr7:103095726:103097348:+	0	+
#Partially deleted in new
chr7	103102523	103102673	ENSG00000161048.11|NAPEPLD|pc|chr7:103102523:103102673:-	0	-
#Partially deleted in new
chr7	103161946	103162660	ENSG00000279482.1|AC007683.2|lncRNA|chr7:103161946:103162660:-	0	-
#Partially deleted in new
chr7	103297455	103297953	ENSG00000105819.13|PMPCB|pc|chr7:103297455:103297953:+	0	+
#Partially deleted in new
chr7	103327331	103327378	ENSG00000105821.14|DNAJC2|pc|chr7:103327331:103327378:-	0	-
#Deleted in new
chr7	103328930	103329511	ENSG00000105819.13|PMPCB|pc|chr7:103328930:103329511:+	0	+
#Partially deleted in new
chr7	103335241	103337811	ENSG00000105821.14|DNAJC2|pc|chr7:103335241:103337811:-	0	-
#Partially deleted in new
chr7	103344913	103345136	ENSG00000161057.11|PSMC2|pc|chr7:103344913:103345136:+	0	+
#Deleted in new
chr7	103352729	103352926	ENSG00000170615.14|SLC26A5|pc|chr7:103352729:103352926:-	0	-
#Deleted in new
chr7	103446616	103446668	ENSG00000234715.1|AC005064.1|lncRNA|chr7:103446616:103446668:+	0	+
#Partially deleted in new
chr7	104165234	104165734	ENSG00000164815.10|ORC5|pc|chr7:104165234:104165734:-	0	-
#Partially deleted in new
chr7	104187542	104187967	ENSG00000164815.10|ORC5|pc|chr7:104187542:104187967:-	0	-
#Deleted in new
chr7	1043418	1043891	ENSG00000225146.1|AC073957.1|lncRNA|chr7:1043418:1043891:+	0	+
#Partially deleted in new
chr7	104738596	104738984	ENSG00000226869.6|LHFPL3-AS1|lncRNA|chr7:104738596:104738984:-	0	-
#Deleted in new
chr7	104738597	104738955	ENSG00000226869.6|LHFPL3-AS1|lncRNA|chr7:104738597:104738955:-	0	-
#Deleted in new
chr7	104744049	104744180	ENSG00000226869.6|LHFPL3-AS1|lncRNA|chr7:104744049:104744180:-	0	-
#Deleted in new
chr7	104752714	104752791	ENSG00000226869.6|LHFPL3-AS1|lncRNA|chr7:104752714:104752791:-	0	-
#Deleted in new
chr7	104752714	104752803	ENSG00000226869.6|LHFPL3-AS1|lncRNA|chr7:104752714:104752803:-	0	-
#Deleted in new
chr7	104757608	104757748	ENSG00000226869.6|LHFPL3-AS1|lncRNA|chr7:104757608:104757748:-	0	-
#Deleted in new
chr7	104894627	104896064	ENSG00000225329.3|LHFPL3-AS2|lncRNA|chr7:104894627:104896064:-	0	-
#Deleted in new
chr7	104911915	104912076	ENSG00000225329.3|LHFPL3-AS2|lncRNA|chr7:104911915:104912076:-	0	-
#Deleted in new
chr7	104915705	104915827	ENSG00000225329.3|LHFPL3-AS2|lncRNA|chr7:104915705:104915827:-	0	-
#Deleted in new
chr7	104920384	104920425	ENSG00000225329.3|LHFPL3-AS2|lncRNA|chr7:104920384:104920425:-	0	-
#Deleted in new
chr7	104941062	104941670	ENSG00000237513.1|AC007384.1|lncRNA|chr7:104941062:104941670:+	0	+
#Deleted in new
chr7	104941205	104941745	ENSG00000237513.1|AC007384.1|lncRNA|chr7:104941205:104941745:+	0	+
#Deleted in new
chr7	104950314	104950532	ENSG00000228393.3|LINC01004|lncRNA|chr7:104950314:104950532:-	0	-
#Deleted in new
chr7	104953699	104953906	ENSG00000228393.3|LINC01004|lncRNA|chr7:104953699:104953906:-	0	-
#Deleted in new
chr7	104961983	104962060	ENSG00000237513.1|AC007384.1|lncRNA|chr7:104961983:104962060:+	0	+
#Deleted in new
chr7	105064027	105064116	ENSG00000005483.20|KMT2E|pc|chr7:105064027:105064116:+	0	+
#Partially deleted in new
chr7	105102837	105105483	ENSG00000272918.1|AC005070.3|lncRNA|chr7:105102837:105105483:-	0	-
#Deleted in new
chr7	105206400	105206529	ENSG00000135250.16|SRPK2|pc|chr7:105206400:105206529:-	0	-
#Deleted in new
chr7	105297420	105297533	ENSG00000135250.16|SRPK2|pc|chr7:105297420:105297533:-	0	-
#Deleted in new
chr7	105298737	105298779	ENSG00000135250.16|SRPK2|pc|chr7:105298737:105298779:-	0	-
#Deleted in new
chr7	105306435	105306571	ENSG00000135250.16|SRPK2|pc|chr7:105306435:105306571:-	0	-
#Deleted in new
chr7	105439660	105439858	ENSG00000091127.13|PUS7|pc|chr7:105439660:105439858:-	0	-
#Deleted in new
chr7	105462213	105462427	ENSG00000091127.13|PUS7|pc|chr7:105462213:105462427:-	0	-
#Deleted in new
chr7	105535571	105535691	ENSG00000135249.7|RINT1|pc|chr7:105535571:105535691:+	0	+
#Partially deleted in new
chr7	105541600	105541855	ENSG00000135249.7|RINT1|pc|chr7:105541600:105541855:+	0	+
#Deleted in new
chr7	105571082	105573660	ENSG00000272604.1|AC073073.2|lncRNA|chr7:105571082:105573660:+	0	+
#Deleted in new
chr7	105600763	105600875	ENSG00000185055.10|EFCAB10|pc|chr7:105600763:105600875:-	0	-
#Deleted in new
chr7	1056103	1056552	ENSG00000164849.9|GPR146|pc|chr7:1056103:1056552:+	0	+
#Deleted in new
chr7	10561481	10561577	ENSG00000283117.1|MGC4859|lncRNA|chr7:10561481:10561577:-	0	-
#Deleted in new
chr7	1056656	1056829	ENSG00000164849.9|GPR146|pc|chr7:1056656:1056829:+	0	+
#Deleted in new
chr7	105879644	105880077	ENSG00000128536.15|CDHR3|pc|chr7:105879644:105880077:+	0	+
#Deleted in new
chr7	105910226	105910598	ENSG00000128536.15|CDHR3|pc|chr7:105910226:105910598:+	0	+
#Partially deleted in new
chr7	105911016	105911241	ENSG00000128536.15|CDHR3|pc|chr7:105911016:105911241:+	0	+
#Partially deleted in new
chr7	105911038	105911241	ENSG00000128536.15|CDHR3|pc|chr7:105911038:105911241:+	0	+
#Deleted in new
chr7	105919534	105919607	ENSG00000128536.15|CDHR3|pc|chr7:105919534:105919607:+	0	+
#Deleted in new
chr7	105923622	105924183	ENSG00000128536.15|CDHR3|pc|chr7:105923622:105924183:+	0	+
#Partially deleted in new
chr7	106032392	106033772	ENSG00000128536.15|CDHR3|pc|chr7:106032392:106033772:+	0	+
#Partially deleted in new
chr7	106032392	106033773	ENSG00000128536.15|CDHR3|pc|chr7:106032392:106033773:+	0	+
#Deleted in new
chr7	106035797	106036431	ENSG00000280439.1|AC004836.1|lncRNA|chr7:106035797:106036431:+	0	+
#Deleted in new
chr7	106092547	106092669	ENSG00000008282.8|SYPL1|pc|chr7:106092547:106092669:-	0	-
#Deleted in new
chr7	106092563	106092669	ENSG00000008282.8|SYPL1|pc|chr7:106092563:106092669:-	0	-
#Deleted in new
chr7	106270214	106270292	ENSG00000105835.11|NAMPT|pc|chr7:106270214:106270292:-	0	-
#Deleted in new
chr7	106270257	106270332	ENSG00000105835.11|NAMPT|pc|chr7:106270257:106270332:-	0	-
#Deleted in new
chr7	106272038	106272106	ENSG00000105835.11|NAMPT|pc|chr7:106272038:106272106:-	0	-
#Deleted in new
chr7	106473871	106473982	ENSG00000243797.6|AC004917.1|lncRNA|chr7:106473871:106473982:-	0	-
#Deleted in new
chr7	106489723	106490064	ENSG00000243797.6|AC004917.1|lncRNA|chr7:106489723:106490064:-	0	-
#Deleted in new
chr7	106491009	106491130	ENSG00000243797.6|AC004917.1|lncRNA|chr7:106491009:106491130:-	0	-
#Deleted in new
chr7	106504708	106504839	ENSG00000243797.6|AC004917.1|lncRNA|chr7:106504708:106504839:-	0	-
#Deleted in new
chr7	106520728	106520819	ENSG00000243797.6|AC004917.1|lncRNA|chr7:106520728:106520819:-	0	-
#Deleted in new
chr7	106572963	106573160	ENSG00000267052.1|AC005050.1|lncRNA|chr7:106572963:106573160:-	0	-
#Deleted in new
chr7	106760565	106760681	ENSG00000243797.6|AC004917.1|lncRNA|chr7:106760565:106760681:-	0	-
#Deleted in new
chr7	106770151	106770207	ENSG00000243797.6|AC004917.1|lncRNA|chr7:106770151:106770207:-	0	-
#Deleted in new
chr7	106775010	106775200	ENSG00000228742.9|AC002384.1|lncRNA|chr7:106775010:106775200:+	0	+
#Deleted in new
chr7	106775075	106775200	ENSG00000228742.9|AC002384.1|lncRNA|chr7:106775075:106775200:+	0	+
#Deleted in new
chr7	106775958	106776022	ENSG00000228742.9|AC002384.1|lncRNA|chr7:106775958:106776022:+	0	+
#Deleted in new
chr7	106777541	106777732	ENSG00000228742.9|AC002384.1|lncRNA|chr7:106777541:106777732:+	0	+
#Deleted in new
chr7	106779994	106782852	ENSG00000228742.9|AC002384.1|lncRNA|chr7:106779994:106782852:+	0	+
#Deleted in new
chr7	106780649	106780942	ENSG00000228742.9|AC002384.1|lncRNA|chr7:106780649:106780942:+	0	+
#Deleted in new
chr7	106824882	106824924	ENSG00000283585.1|AC002384.2|lncRNA|chr7:106824882:106824924:+	0	+
#Deleted in new
chr7	106830061	106830210	ENSG00000283585.1|AC002384.2|lncRNA|chr7:106830061:106830210:+	0	+
#Deleted in new
chr7	106831992	106832189	ENSG00000283585.1|AC002384.2|lncRNA|chr7:106831992:106832189:+	0	+
#Deleted in new
chr7	106838074	106838476	ENSG00000283585.1|AC002384.2|lncRNA|chr7:106838074:106838476:+	0	+
#Deleted in new
chr7	10702675	10702776	ENSG00000236414.1|AC004415.1|lncRNA|chr7:10702675:10702776:+	0	+
#Deleted in new
chr7	107066590	107066900	ENSG00000243193.4|AC006387.1|lncRNA|chr7:107066590:107066900:-	0	-
#Partially deleted in new
chr7	107068747	107068868	ENSG00000243193.4|AC006387.1|lncRNA|chr7:107068747:107068868:-	0	-
#Deleted in new
chr7	107077225	107077385	ENSG00000243193.4|AC006387.1|lncRNA|chr7:107077225:107077385:-	0	-
#Deleted in new
chr7	107077316	107077385	ENSG00000243193.4|AC006387.1|lncRNA|chr7:107077316:107077385:-	0	-
#Deleted in new
chr7	107077766	107078238	ENSG00000243193.4|AC006387.1|lncRNA|chr7:107077766:107078238:-	0	-
#Deleted in new
chr7	107081838	107082088	ENSG00000243193.4|AC006387.1|lncRNA|chr7:107081838:107082088:-	0	-
#Deleted in new
chr7	107173456	107173591	ENSG00000105856.13|HBP1|pc|chr7:107173456:107173591:+	0	+
#Deleted in new
chr7	107192558	107193300	ENSG00000272072.1|AC004492.1|lncRNA|chr7:107192558:107193300:-	0	-
#Deleted in new
chr7	107196289	107196369	ENSG00000105856.13|HBP1|pc|chr7:107196289:107196369:+	0	+
#Deleted in new
chr7	1074449	1074774	ENSG00000224079.1|AC091729.1|lncRNA|chr7:1074449:1074774:+	0	+
#Deleted in new
chr7	107549210	107549259	ENSG00000164597.13|COG5|pc|chr7:107549210:107549259:-	0	-
#Deleted in new
chr7	107564587	107564676	ENSG00000105865.10|DUS4L|pc|chr7:107564587:107564676:+	0	+
#Deleted in new
chr7	107579556	107580057	ENSG00000272854.1|AC004839.1|lncRNA|chr7:107579556:107580057:-	0	-
#Partially deleted in new
chr7	107579976	107580301	ENSG00000075790.10|BCAP29|pc|chr7:107579976:107580301:+	0	+
#Deleted in new
chr7	107587410	107587952	ENSG00000075790.10|BCAP29|pc|chr7:107587410:107587952:+	0	+
#Partially deleted in new
chr7	1075940	1076211	ENSG00000224079.1|AC091729.1|lncRNA|chr7:1075940:1076211:+	0	+
#Deleted in new
chr7	107621629	107621953	ENSG00000075790.10|BCAP29|pc|chr7:107621629:107621953:+	0	+
#Deleted in new
chr7	107654610	107654816	ENSG00000233705.6|SLC26A4-AS1|lncRNA|chr7:107654610:107654816:-	0	-
#Deleted in new
chr7	107654643	107654816	ENSG00000233705.6|SLC26A4-AS1|lncRNA|chr7:107654643:107654816:-	0	-
#Deleted in new
chr7	107655095	107655312	ENSG00000233705.6|SLC26A4-AS1|lncRNA|chr7:107655095:107655312:-	0	-
#Deleted in new
chr7	107656121	107656234	ENSG00000233705.6|SLC26A4-AS1|lncRNA|chr7:107656121:107656234:-	0	-
#Partially deleted in new
chr7	107656629	107660206	ENSG00000233705.6|SLC26A4-AS1|lncRNA|chr7:107656629:107660206:-	0	-
#Partially deleted in new
chr7	107662023	107662064	ENSG00000233705.6|SLC26A4-AS1|lncRNA|chr7:107662023:107662064:-	0	-
#Partially deleted in new
chr7	107662023	107662065	ENSG00000233705.6|SLC26A4-AS1|lncRNA|chr7:107662023:107662065:-	0	-
#Deleted in new
chr7	107752544	107752617	ENSG00000105879.11|CBLL1|pc|chr7:107752544:107752617:+	0	+
#Deleted in new
chr7	1077763	1078036	ENSG00000224079.1|AC091729.1|lncRNA|chr7:1077763:1078036:+	0	+
#Deleted in new
chr7	10779881	10779944	ENSG00000283117.1|MGC4859|lncRNA|chr7:10779881:10779944:-	0	-
#Deleted in new
chr7	107936278	107936373	ENSG00000091136.13|LAMB1|pc|chr7:107936278:107936373:-	0	-
#Partially deleted in new
chr7	107942115	107942740	ENSG00000273055.1|AC005046.1|lncRNA|chr7:107942115:107942740:+	0	+
#Deleted in new
chr7	107942398	107942619	ENSG00000091136.13|LAMB1|pc|chr7:107942398:107942619:-	0	-
#Deleted in new
chr7	108047907	108048111	ENSG00000091128.12|LAMB4|pc|chr7:108047907:108048111:-	0	-
#Deleted in new
chr7	108049325	108049531	ENSG00000091128.12|LAMB4|pc|chr7:108049325:108049531:-	0	-
#Partially deleted in new
chr7	108075536	108075932	ENSG00000091128.12|LAMB4|pc|chr7:108075536:108075932:-	0	-
#Deleted in new
chr7	1080862	1080923	ENSG00000226291.1|AC091729.2|lncRNA|chr7:1080862:1080923:+	0	+
#Duplicated in new
chr7	108098402	108098582	ENSG00000091128.12|LAMB4|pc|chr7:108098402:108098582:-	0	-
#Deleted in new
chr7	108130305	108130355	ENSG00000091128.12|LAMB4|pc|chr7:108130305:108130355:-	0	-
#Deleted in new
chr7	108130305	108130356	ENSG00000091128.12|LAMB4|pc|chr7:108130305:108130356:-	0	-
#Deleted in new
chr7	1081937	1082178	ENSG00000226291.1|AC091729.2|lncRNA|chr7:1081937:1082178:+	0	+
#Deleted in new
chr7	1082207	1082274	ENSG00000164850.14|GPER1|pc|chr7:1082207:1082274:+	0	+
#Deleted in new
chr7	108518189	108518287	ENSG00000135241.16|PNPLA8|pc|chr7:108518189:108518287:-	0	-
#Deleted in new
chr7	108518189	108518301	ENSG00000135241.16|PNPLA8|pc|chr7:108518189:108518301:-	0	-
#Deleted in new
chr7	108521475	108521521	ENSG00000135241.16|PNPLA8|pc|chr7:108521475:108521521:-	0	-
#Deleted in new
chr7	108554542	108554859	ENSG00000177683.13|THAP5|pc|chr7:108554542:108554859:-	0	-
#Partially deleted in new
chr7	108562226	108565105	ENSG00000177683.13|THAP5|pc|chr7:108562226:108565105:-	0	-
#Partially deleted in new
chr7	108564085	108565105	ENSG00000177683.13|THAP5|pc|chr7:108564085:108565105:-	0	-
#Deleted in new
chr7	108564381	108565105	ENSG00000177683.13|THAP5|pc|chr7:108564381:108565105:-	0	-
#Deleted in new
chr7	108564569	108565105	ENSG00000177683.13|THAP5|pc|chr7:108564569:108565105:-	0	-
#Deleted in new
chr7	108564992	108565105	ENSG00000177683.13|THAP5|pc|chr7:108564992:108565105:-	0	-
#Partially deleted in new
chr7	108565170	108566022	ENSG00000177683.13|THAP5|pc|chr7:108565170:108566022:-	0	-
#Deleted in new
chr7	1086806	1087244	ENSG00000164850.14|GPER1|pc|chr7:1086806:1087244:+	0	+
#Deleted in new
chr7	1086875	1087244	ENSG00000164850.14|GPER1|pc|chr7:1086875:1087244:+	0	+
#Deleted in new
chr7	108884427	108884587	ENSG00000205174.4|C7orf66|lncRNA|chr7:108884427:108884587:-	0	-
#Deleted in new
chr7	108952411	108952666	ENSG00000229603.1|AC004014.1|lncRNA|chr7:108952411:108952666:+	0	+
#Deleted in new
chr7	109322319	109322613	ENSG00000230941.1|AC002386.1|lncRNA|chr7:109322319:109322613:-	0	-
#Deleted in new
chr7	109562744	109562835	ENSG00000234273.1|AC073071.1|lncRNA|chr7:109562744:109562835:-	0	-
#Deleted in new
chr7	109597040	109597166	ENSG00000234273.1|AC073071.1|lncRNA|chr7:109597040:109597166:-	0	-
#Partially deleted in new
chr7	11014906	11015219	ENSG00000106443.15|PHF14|pc|chr7:11014906:11015219:+	0	+
#Deleted in new
chr7	110432238	110432310	ENSG00000226965.1|AC092167.1|lncRNA|chr7:110432238:110432310:-	0	-
#Deleted in new
chr7	110511059	110511114	ENSG00000226965.1|AC092167.1|lncRNA|chr7:110511059:110511114:-	0	-
#Deleted in new
chr7	110525455	110525561	ENSG00000226965.1|AC092167.1|lncRNA|chr7:110525455:110525561:-	0	-
#Deleted in new
chr7	110664823	110665012	ENSG00000184903.9|IMMP2L|pc|chr7:110664823:110665012:-	0	-
#Deleted in new
chr7	1109327	1109461	ENSG00000146540.14|C7orf50|pc|chr7:1109327:1109461:-	0	-
#Deleted in new
chr7	111391837	111392019	ENSG00000184903.9|IMMP2L|pc|chr7:111391837:111392019:-	0	-
#Deleted in new
chr7	111392801	111392915	ENSG00000184903.9|IMMP2L|pc|chr7:111392801:111392915:-	0	-
#Partially deleted in new
chr7	111801685	111801735	ENSG00000128512.20|DOCK4|pc|chr7:111801685:111801735:-	0	-
#Deleted in new
chr7	111807520	111807594	ENSG00000128512.20|DOCK4|pc|chr7:111807520:111807594:-	0	-
#Deleted in new
chr7	111807895	111807899	ENSG00000128512.20|DOCK4|pc|chr7:111807895:111807899:-	0	-
#Deleted in new
chr7	111840762	111840870	ENSG00000128512.20|DOCK4|pc|chr7:111840762:111840870:-	0	-
#Deleted in new
chr7	11186620	11186799	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11186620:11186799:+	0	+
#Deleted in new
chr7	11188538	11188634	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11188538:11188634:+	0	+
#Deleted in new
chr7	11192759	11193050	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11192759:11193050:+	0	+
#Deleted in new
chr7	11192994	11193050	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11192994:11193050:+	0	+
#Deleted in new
chr7	11193365	11193422	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11193365:11193422:+	0	+
#Deleted in new
chr7	11193378	11193422	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11193378:11193422:+	0	+
#Deleted in new
chr7	11194705	11194784	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11194705:11194784:+	0	+
#Deleted in new
chr7	11197306	11197444	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11197306:11197444:+	0	+
#Deleted in new
chr7	11197309	11197417	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11197309:11197417:+	0	+
#Deleted in new
chr7	11197309	11197444	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11197309:11197444:+	0	+
#Partially deleted in new
chr7	112286872	112288979	ENSG00000198839.9|ZNF277|pc|chr7:112286872:112288979:+	0	+
#Deleted in new
chr7	112328188	112328398	ENSG00000226851.1|AC004112.1|lncRNA|chr7:112328188:112328398:-	0	-
#Deleted in new
chr7	112328256	112328398	ENSG00000226851.1|AC004112.1|lncRNA|chr7:112328256:112328398:-	0	-
#Deleted in new
chr7	112350463	112350541	ENSG00000226851.1|AC004112.1|lncRNA|chr7:112350463:112350541:-	0	-
#Deleted in new
chr7	112384938	112385104	ENSG00000226851.1|AC004112.1|lncRNA|chr7:112384938:112385104:-	0	-
#Deleted in new
chr7	112409508	112409623	ENSG00000226851.1|AC004112.1|lncRNA|chr7:112409508:112409623:-	0	-
#Partially deleted in new
chr7	112452057	112452511	ENSG00000006652.13|IFRD1|pc|chr7:112452057:112452511:+	0	+
#Deleted in new
chr7	11248292	11248375	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11248292:11248375:+	0	+
#Deleted in new
chr7	11248292	11248376	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11248292:11248376:+	0	+
#Deleted in new
chr7	112483413	112483606	ENSG00000181016.9|LSMEM1|pc|chr7:112483413:112483606:+	0	+
#Partially deleted in new
chr7	112622377	112622619	ENSG00000223646.1|AC002463.1|lncRNA|chr7:112622377:112622619:+	0	+
#Deleted in new
chr7	112635278	112635366	ENSG00000223646.1|AC002463.1|lncRNA|chr7:112635278:112635366:+	0	+
#Deleted in new
chr7	112635837	112635922	ENSG00000223646.1|AC002463.1|lncRNA|chr7:112635837:112635922:+	0	+
#Deleted in new
chr7	112699329	112699522	ENSG00000223646.1|AC002463.1|lncRNA|chr7:112699329:112699522:+	0	+
#Deleted in new
chr7	112778222	112778656	ENSG00000146802.12|TMEM168|pc|chr7:112778222:112778656:-	0	-
#Deleted in new
chr7	112956521	112956702	ENSG00000234520.5|HRAT17|lncRNA|chr7:112956521:112956702:-	0	-
#Deleted in new
chr7	112973604	112973672	ENSG00000234520.5|HRAT17|lncRNA|chr7:112973604:112973672:-	0	-
#Deleted in new
chr7	112973618	112973672	ENSG00000234520.5|HRAT17|lncRNA|chr7:112973618:112973672:-	0	-
#Deleted in new
chr7	112980045	112980164	ENSG00000234520.5|HRAT17|lncRNA|chr7:112980045:112980164:-	0	-
#Deleted in new
chr7	112980903	112981161	ENSG00000234520.5|HRAT17|lncRNA|chr7:112980903:112981161:-	0	-
#Deleted in new
chr7	112986535	112986664	ENSG00000234520.5|HRAT17|lncRNA|chr7:112986535:112986664:-	0	-
#Deleted in new
chr7	11322248	11322324	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11322248:11322324:+	0	+
#Partially deleted in new
chr7	113451071	113451402	ENSG00000278894.1|AC073348.1|lncRNA|chr7:113451071:113451402:+	0	+
#Deleted in new
chr7	1137314	1138240	ENSG00000146540.14|C7orf50|pc|chr7:1137314:1138240:-	0	-
#Deleted in new
chr7	1138188	1138257	ENSG00000146540.14|C7orf50|pc|chr7:1138188:1138257:-	0	-
#Deleted in new
chr7	1138217	1138257	ENSG00000146540.14|C7orf50|pc|chr7:1138217:1138257:-	0	-
#Deleted in new
chr7	1138217	1138260	ENSG00000146540.14|C7orf50|pc|chr7:1138217:1138260:-	0	-
#Deleted in new
chr7	11383796	11383869	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11383796:11383869:+	0	+
#Deleted in new
chr7	11383796	11383908	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11383796:11383908:+	0	+
#Deleted in new
chr7	11383796	11384418	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11383796:11384418:+	0	+
#Deleted in new
chr7	11383796	11385678	ENSG00000230333.6|AC004160.1|lncRNA|chr7:11383796:11385678:+	0	+
#Deleted in new
chr7	11413813	11414078	ENSG00000230435.1|AC004160.2|lncRNA|chr7:11413813:11414078:+	0	+
#Deleted in new
chr7	114285404	114285456	ENSG00000128573.24|FOXP2|pc|chr7:114285404:114285456:+	0	+
#Deleted in new
chr7	114463073	114463171	ENSG00000128573.24|FOXP2|pc|chr7:114463073:114463171:+	0	+
#Partially deleted in new
chr7	114933868	114933975	ENSG00000135272.10|MDFIC|pc|chr7:114933868:114933975:+	0	+
#Deleted in new
chr7	115078957	115079109	ENSG00000225535.6|LINC01393|lncRNA|chr7:115078957:115079109:+	0	+
#Deleted in new
chr7	115078997	115079109	ENSG00000225535.6|LINC01393|lncRNA|chr7:115078997:115079109:+	0	+
#Deleted in new
chr7	115079018	115079109	ENSG00000225535.6|LINC01393|lncRNA|chr7:115079018:115079109:+	0	+
#Deleted in new
chr7	115118211	115118825	ENSG00000225535.6|LINC01393|lncRNA|chr7:115118211:115118825:+	0	+
#Deleted in new
chr7	115118732	115118825	ENSG00000225535.6|LINC01393|lncRNA|chr7:115118732:115118825:+	0	+
#Deleted in new
chr7	115118934	115119056	ENSG00000225535.6|LINC01393|lncRNA|chr7:115118934:115119056:+	0	+
#Partially deleted in new
chr7	115125442	115125791	ENSG00000225535.6|LINC01393|lncRNA|chr7:115125442:115125791:+	0	+
#Deleted in new
chr7	115155065	115155206	ENSG00000233607.1|LINC01392|lncRNA|chr7:115155065:115155206:-	0	-
#Deleted in new
chr7	115682388	115682618	ENSG00000240973.1|AC093714.1|lncRNA|chr7:115682388:115682618:-	0	-
#Partially deleted in new
chr7	1157022	1157750	ENSG00000178381.11|ZFAND2A|pc|chr7:1157022:1157750:-	0	-
#Deleted in new
chr7	115789728	115790266	ENSG00000243345.1|AC093714.2|lncRNA|chr7:115789728:115790266:+	0	+
#Deleted in new
chr7	115790428	115790621	ENSG00000243345.1|AC093714.2|lncRNA|chr7:115790428:115790621:+	0	+
#Deleted in new
chr7	115791017	115791049	ENSG00000243345.1|AC093714.2|lncRNA|chr7:115791017:115791049:+	0	+
#Partially deleted in new
chr7	1160661	1160759	ENSG00000178381.11|ZFAND2A|pc|chr7:1160661:1160759:-	0	-
#Deleted in new
chr7	116120119	116120429	ENSG00000105967.15|TFEC|pc|chr7:116120119:116120429:-	0	-
#Deleted in new
chr7	116120189	116120429	ENSG00000105967.15|TFEC|pc|chr7:116120189:116120429:-	0	-
#Deleted in new
chr7	116157301	116157360	ENSG00000105967.15|TFEC|pc|chr7:116157301:116157360:-	0	-
#Deleted in new
chr7	116159789	116159895	ENSG00000105967.15|TFEC|pc|chr7:116159789:116159895:-	0	-
#Deleted in new
chr7	116159789	116159896	ENSG00000105967.15|TFEC|pc|chr7:116159789:116159896:-	0	-
#Partially deleted in new
chr7	116222950	116223026	ENSG00000135269.17|TES|pc|chr7:116222950:116223026:+	0	+
#Deleted in new
chr7	1162351	1162543	ENSG00000229043.2|AC091729.3|lncRNA|chr7:1162351:1162543:+	0	+
#Deleted in new
chr7	116243841	116243936	ENSG00000243243.5|AC073130.2|lncRNA|chr7:116243841:116243936:-	0	-
#Deleted in new
chr7	116243877	116243936	ENSG00000237813.3|AC002066.1|lncRNA|chr7:116243877:116243936:-	0	-
#Deleted in new
chr7	1162684	1162728	ENSG00000229043.2|AC091729.3|lncRNA|chr7:1162684:1162728:+	0	+
#Deleted in new
chr7	116275605	116277432	ENSG00000237870.6|AC073130.1|lncRNA|chr7:116275605:116277432:-	0	-
#Deleted in new
chr7	116277002	116277432	ENSG00000237870.6|AC073130.1|lncRNA|chr7:116277002:116277432:-	0	-
#Deleted in new
chr7	116277131	116277432	ENSG00000237870.6|AC073130.1|lncRNA|chr7:116277131:116277432:-	0	-
#Deleted in new
chr7	116283840	116284406	ENSG00000237870.6|AC073130.1|lncRNA|chr7:116283840:116284406:-	0	-
#Deleted in new
chr7	116284367	116284406	ENSG00000237870.6|AC073130.1|lncRNA|chr7:116284367:116284406:-	0	-
#Deleted in new
chr7	116286111	116286195	ENSG00000237870.6|AC073130.1|lncRNA|chr7:116286111:116286195:-	0	-
#Deleted in new
chr7	116286617	116286651	ENSG00000237870.6|AC073130.1|lncRNA|chr7:116286617:116286651:-	0	-
#Deleted in new
chr7	116286617	116286664	ENSG00000237870.6|AC073130.1|lncRNA|chr7:116286617:116286664:-	0	-
#Deleted in new
chr7	116286698	116286734	ENSG00000237870.6|AC073130.1|lncRNA|chr7:116286698:116286734:-	0	-
#Deleted in new
chr7	116287379	116287428	ENSG00000105971.14|CAV2|pc|chr7:116287379:116287428:+	0	+
#Deleted in new
chr7	116289851	116290050	ENSG00000105971.14|CAV2|pc|chr7:116289851:116290050:+	0	+
#Deleted in new
chr7	116289876	116290050	ENSG00000105971.14|CAV2|pc|chr7:116289876:116290050:+	0	+
#Deleted in new
chr7	116289877	116290050	ENSG00000105971.14|CAV2|pc|chr7:116289877:116290050:+	0	+
#Deleted in new
chr7	116289912	116290050	ENSG00000105971.14|CAV2|pc|chr7:116289912:116290050:+	0	+
#Deleted in new
chr7	1162961	1163217	ENSG00000229043.2|AC091729.3|lncRNA|chr7:1162961:1163217:+	0	+
#Deleted in new
chr7	116298456	116298509	ENSG00000105971.14|CAV2|pc|chr7:116298456:116298509:+	0	+
#Deleted in new
chr7	116319640	116319759	ENSG00000105971.14|CAV2|pc|chr7:116319640:116319759:+	0	+
#Deleted in new
chr7	116322801	116322823	ENSG00000105971.14|CAV2|pc|chr7:116322801:116322823:+	0	+
#Deleted in new
chr7	116322801	116322888	ENSG00000105971.14|CAV2|pc|chr7:116322801:116322888:+	0	+
#Deleted in new
chr7	116323089	116323179	ENSG00000105971.14|CAV2|pc|chr7:116323089:116323179:+	0	+
#Partially deleted in new
chr7	116327831	116327896	ENSG00000243243.5|AC073130.2|lncRNA|chr7:116327831:116327896:-	0	-
#Deleted in new
chr7	116331584	116331776	ENSG00000105971.14|CAV2|pc|chr7:116331584:116331776:+	0	+
#Deleted in new
chr7	1163342	1163491	ENSG00000229043.2|AC091729.3|lncRNA|chr7:1163342:1163491:+	0	+
#Deleted in new
chr7	116337119	116337181	ENSG00000105971.14|CAV2|pc|chr7:116337119:116337181:+	0	+
#Deleted in new
chr7	116337119	116337241	ENSG00000105971.14|CAV2|pc|chr7:116337119:116337241:+	0	+
#Deleted in new
chr7	1163451	1163495	ENSG00000229043.2|AC091729.3|lncRNA|chr7:1163451:1163495:+	0	+
#Partially deleted in new
chr7	116407411	116407480	ENSG00000105971.14|CAV2|pc|chr7:116407411:116407480:+	0	+
#Deleted in new
chr7	1164160	1164575	ENSG00000229043.2|AC091729.3|lncRNA|chr7:1164160:1164575:+	0	+
#Deleted in new
chr7	1164160	1165267	ENSG00000229043.2|AC091729.3|lncRNA|chr7:1164160:1165267:+	0	+
#Deleted in new
chr7	116425763	116425903	ENSG00000105971.14|CAV2|pc|chr7:116425763:116425903:+	0	+
#Deleted in new
chr7	116470043	116470089	ENSG00000105971.14|CAV2|pc|chr7:116470043:116470089:+	0	+
#Deleted in new
chr7	116482812	116482903	ENSG00000237813.3|AC002066.1|lncRNA|chr7:116482812:116482903:-	0	-
#Deleted in new
chr7	116724145	116724249	ENSG00000105976.14|MET|pc|chr7:116724145:116724249:+	0	+
#Deleted in new
chr7	116724771	116724847	ENSG00000105976.14|MET|pc|chr7:116724771:116724847:+	0	+
#Deleted in new
chr7	116861190	116861350	ENSG00000198898.13|CAPZA2|pc|chr7:116861190:116861350:+	0	+
#Deleted in new
chr7	116880066	116880138	ENSG00000198898.13|CAPZA2|pc|chr7:116880066:116880138:+	0	+
#Deleted in new
chr7	116880066	116880147	ENSG00000198898.13|CAPZA2|pc|chr7:116880066:116880147:+	0	+
#Deleted in new
chr7	116886063	116886102	ENSG00000198898.13|CAPZA2|pc|chr7:116886063:116886102:+	0	+
#Partially deleted in new
chr7	116888126	116888699	ENSG00000198898.13|CAPZA2|pc|chr7:116888126:116888699:+	0	+
#Partially deleted in new
chr7	116915455	116916122	ENSG00000198898.13|CAPZA2|pc|chr7:116915455:116916122:+	0	+
#Deleted in new
chr7	116965845	116966122	ENSG00000228368.1|AC106873.1|lncRNA|chr7:116965845:116966122:-	0	-
#Deleted in new
chr7	116967290	116967472	ENSG00000228368.1|AC106873.1|lncRNA|chr7:116967290:116967472:-	0	-
#Deleted in new
chr7	116968398	116968574	ENSG00000214188.9|ST7-OT4|lncRNA|chr7:116968398:116968574:+	0	+
#Deleted in new
chr7	117073819	117073926	ENSG00000226367.5|ST7-AS2|lncRNA|chr7:117073819:117073926:-	0	-
#Deleted in new
chr7	117076523	117076651	ENSG00000004866.20|ST7|pc|chr7:117076523:117076651:+	0	+
#Deleted in new
chr7	117098612	117098702	ENSG00000004866.20|ST7|pc|chr7:117098612:117098702:+	0	+
#Deleted in new
chr7	117098612	117098806	ENSG00000214188.9|ST7-OT4|lncRNA|chr7:117098612:117098806:+	0	+
#Deleted in new
chr7	117098612	117098815	ENSG00000004866.20|ST7|pc|chr7:117098612:117098815:+	0	+
#Deleted in new
chr7	117112291	117112667	ENSG00000226367.5|ST7-AS2|lncRNA|chr7:117112291:117112667:-	0	-
#Deleted in new
chr7	117145364	117145607	ENSG00000226367.5|ST7-AS2|lncRNA|chr7:117145364:117145607:-	0	-
#Deleted in new
chr7	117145395	117145558	ENSG00000226367.5|ST7-AS2|lncRNA|chr7:117145395:117145558:-	0	-
#Deleted in new
chr7	117145395	117145560	ENSG00000226367.5|ST7-AS2|lncRNA|chr7:117145395:117145560:-	0	-
#Deleted in new
chr7	117145395	117145592	ENSG00000226367.5|ST7-AS2|lncRNA|chr7:117145395:117145592:-	0	-
#Deleted in new
chr7	117146131	117146480	ENSG00000226367.5|ST7-AS2|lncRNA|chr7:117146131:117146480:-	0	-
#Deleted in new
chr7	117198319	117198397	ENSG00000004866.20|ST7|pc|chr7:117198319:117198397:+	0	+
#Deleted in new
chr7	117198319	117198540	ENSG00000004866.20|ST7|pc|chr7:117198319:117198540:+	0	+
#Deleted in new
chr7	117199071	117199144	ENSG00000004866.20|ST7|pc|chr7:117199071:117199144:+	0	+
#Partially deleted in new
chr7	117222860	117223133	ENSG00000004866.20|ST7|pc|chr7:117222860:117223133:+	0	+
#Deleted in new
chr7	11751136	11751353	ENSG00000005108.15|THSD7A|pc|chr7:11751136:11751353:-	0	-
#Deleted in new
chr7	117647350	117647415	ENSG00000083622.8|AC000061.1|lncRNA|chr7:117647350:117647415:-	0	-
#Deleted in new
chr7	117689712	117689921	ENSG00000001626.14|CFTR|pc|chr7:117689712:117689921:+	0	+
#Deleted in new
chr7	117712340	117712404	ENSG00000001626.14|CFTR|pc|chr7:117712340:117712404:+	0	+
#Deleted in new
chr7	117714170	117714265	ENSG00000001626.14|CFTR|pc|chr7:117714170:117714265:+	0	+
#Deleted in new
chr7	117998857	117999138	ENSG00000234826.1|AC003084.1|lncRNA|chr7:117998857:117999138:-	0	-
#Deleted in new
chr7	118214668	118214804	ENSG00000106013.14|ANKRD7|pc|chr7:118214668:118214804:+	0	+
#Deleted in new
chr7	118214672	118214804	ENSG00000106013.14|ANKRD7|pc|chr7:118214672:118214804:+	0	+
#Deleted in new
chr7	118227931	118227991	ENSG00000106013.14|ANKRD7|pc|chr7:118227931:118227991:+	0	+
#Deleted in new
chr7	118239974	118239998	ENSG00000106013.14|ANKRD7|pc|chr7:118239974:118239998:+	0	+
#Deleted in new
chr7	118242348	118242689	ENSG00000106013.14|ANKRD7|pc|chr7:118242348:118242689:+	0	+
#Deleted in new
chr7	118242348	118242692	ENSG00000106013.14|ANKRD7|pc|chr7:118242348:118242692:+	0	+
#Deleted in new
chr7	118242348	118242715	ENSG00000106013.14|ANKRD7|pc|chr7:118242348:118242715:+	0	+
#Deleted in new
chr7	118259836	118259889	ENSG00000106013.14|ANKRD7|pc|chr7:118259836:118259889:+	0	+
#Deleted in new
chr7	118280192	118280289	ENSG00000106013.14|ANKRD7|pc|chr7:118280192:118280289:+	0	+
#Deleted in new
chr7	118322670	118322711	ENSG00000106013.14|ANKRD7|pc|chr7:118322670:118322711:+	0	+
#Deleted in new
chr7	118322854	118322996	ENSG00000106013.14|ANKRD7|pc|chr7:118322854:118322996:+	0	+
#Deleted in new
chr7	118322858	118322996	ENSG00000106013.14|ANKRD7|pc|chr7:118322858:118322996:+	0	+
#Deleted in new
chr7	118324485	118324575	ENSG00000106013.14|ANKRD7|pc|chr7:118324485:118324575:+	0	+
#Deleted in new
chr7	118426976	118427074	ENSG00000106013.14|ANKRD7|pc|chr7:118426976:118427074:+	0	+
#Deleted in new
chr7	118431923	118432019	ENSG00000106013.14|ANKRD7|pc|chr7:118431923:118432019:+	0	+
#Deleted in new
chr7	118433517	118433593	ENSG00000106013.14|ANKRD7|pc|chr7:118433517:118433593:+	0	+
#Deleted in new
chr7	118433883	118433979	ENSG00000106013.14|ANKRD7|pc|chr7:118433883:118433979:+	0	+
#Deleted in new
chr7	118443399	118443535	ENSG00000106013.14|ANKRD7|pc|chr7:118443399:118443535:+	0	+
#Deleted in new
chr7	118477069	118477139	ENSG00000106013.14|ANKRD7|pc|chr7:118477069:118477139:+	0	+
#Deleted in new
chr7	118493672	118493788	ENSG00000106013.14|ANKRD7|pc|chr7:118493672:118493788:+	0	+
#Deleted in new
chr7	119704555	119704972	ENSG00000225546.5|LINC02476|lncRNA|chr7:119704555:119704972:-	0	-
#Deleted in new
chr7	119782283	119782357	ENSG00000225546.5|LINC02476|lncRNA|chr7:119782283:119782357:-	0	-
#Deleted in new
chr7	119800815	119800874	ENSG00000225546.5|LINC02476|lncRNA|chr7:119800815:119800874:-	0	-
#Deleted in new
chr7	119907292	119907375	ENSG00000225546.5|LINC02476|lncRNA|chr7:119907292:119907375:-	0	-
#Deleted in new
chr7	120141015	120141203	ENSG00000233417.1|AC004872.1|lncRNA|chr7:120141015:120141203:-	0	-
#Deleted in new
chr7	120168344	120168394	ENSG00000233969.1|AC004946.1|lncRNA|chr7:120168344:120168394:+	0	+
#Deleted in new
chr7	120746737	120746906	ENSG00000231295.1|AC004888.1|lncRNA|chr7:120746737:120746906:-	0	-
#Deleted in new
chr7	120956159	120956980	ENSG00000071243.15|ING3|pc|chr7:120956159:120956980:+	0	+
#Deleted in new
chr7	121050390	121050442	ENSG00000106034.17|CPED1|pc|chr7:121050390:121050442:+	0	+
#Deleted in new
chr7	121062764	121062896	ENSG00000106034.17|CPED1|pc|chr7:121062764:121062896:+	0	+
#Deleted in new
chr7	121261631	121261799	ENSG00000106034.17|CPED1|pc|chr7:121261631:121261799:+	0	+
#Deleted in new
chr7	121261631	121261831	ENSG00000106034.17|CPED1|pc|chr7:121261631:121261831:+	0	+
#Deleted in new
chr7	121261631	121261918	ENSG00000106034.17|CPED1|pc|chr7:121261631:121261918:+	0	+
#Deleted in new
chr7	121650252	121650360	ENSG00000227743.1|AC004875.1|lncRNA|chr7:121650252:121650360:-	0	-
#Deleted in new
chr7	122082787	122082872	ENSG00000008311.14|AASS|pc|chr7:122082787:122082872:-	0	-
#Deleted in new
chr7	122082787	122082891	ENSG00000008311.14|AASS|pc|chr7:122082787:122082891:-	0	-
#Deleted in new
chr7	12214200	12214394	ENSG00000106460.18|TMEM106B|pc|chr7:12214200:12214394:+	0	+
#Partially deleted in new
chr7	12215603	12215707	ENSG00000106460.18|TMEM106B|pc|chr7:12215603:12215707:+	0	+
#Partially deleted in new
chr7	12215603	12215804	ENSG00000106460.18|TMEM106B|pc|chr7:12215603:12215804:+	0	+
#Deleted in new
chr7	122216346	122216462	ENSG00000234418.1|AC015983.2|lncRNA|chr7:122216346:122216462:+	0	+
#Deleted in new
chr7	122216968	122217028	ENSG00000234418.1|AC015983.2|lncRNA|chr7:122216968:122217028:+	0	+
#Deleted in new
chr7	122218141	122218437	ENSG00000234418.1|AC015983.2|lncRNA|chr7:122218141:122218437:+	0	+
#Deleted in new
chr7	122338949	122338996	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122338949:122338996:+	0	+
#Deleted in new
chr7	122357355	122357409	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122357355:122357409:+	0	+
#Deleted in new
chr7	122368069	122368204	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122368069:122368204:+	0	+
#Deleted in new
chr7	122369632	122369839	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122369632:122369839:+	0	+
#Deleted in new
chr7	122382216	122382296	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122382216:122382296:+	0	+
#Deleted in new
chr7	122412809	122413082	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122412809:122413082:+	0	+
#Deleted in new
chr7	122422001	122422060	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122422001:122422060:+	0	+
#Deleted in new
chr7	122422001	122422061	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122422001:122422061:+	0	+
#Deleted in new
chr7	122422030	122422060	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122422030:122422060:+	0	+
#Deleted in new
chr7	122422031	122422060	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122422031:122422060:+	0	+
#Deleted in new
chr7	122425960	122426010	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122425960:122426010:+	0	+
#Deleted in new
chr7	122425960	122426075	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122425960:122426075:+	0	+
#Deleted in new
chr7	122425960	122426158	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122425960:122426158:+	0	+
#Deleted in new
chr7	122425960	122426211	ENSG00000240499.7|AC004594.1|lncRNA|chr7:122425960:122426211:+	0	+
#Deleted in new
chr7	123102460	123102531	ENSG00000226680.2|AC073311.1|lncRNA|chr7:123102460:123102531:-	0	-
#Deleted in new
chr7	123103525	123103589	ENSG00000226680.2|AC073311.1|lncRNA|chr7:123103525:123103589:-	0	-
#Deleted in new
chr7	123148405	123148573	ENSG00000081800.8|SLC13A1|pc|chr7:123148405:123148573:-	0	-
#Deleted in new
chr7	123149443	123149620	ENSG00000081800.8|SLC13A1|pc|chr7:123149443:123149620:-	0	-
#Deleted in new
chr7	123190457	123190613	ENSG00000081800.8|SLC13A1|pc|chr7:123190457:123190613:-	0	-
#Deleted in new
chr7	123459692	123459856	ENSG00000232524.1|AC073323.1|lncRNA|chr7:123459692:123459856:+	0	+
#Deleted in new
chr7	123462647	123462832	ENSG00000164675.10|IQUB|pc|chr7:123462647:123462832:-	0	-
#Duplicated in new
chr7	123534491	123535077	ENSG00000164675.10|IQUB|pc|chr7:123534491:123535077:-	0	-
#Partially deleted in new
chr7	123536996	123542220	ENSG00000128609.14|NDUFA5|pc|chr7:123536996:123542220:-	0	-
#Partially deleted in new
chr7	123541028	123542220	ENSG00000128609.14|NDUFA5|pc|chr7:123541028:123542220:-	0	-
#Partially deleted in new
chr7	123541029	123542220	ENSG00000128609.14|NDUFA5|pc|chr7:123541029:123542220:-	0	-
#Partially deleted in new
chr7	123541095	123542220	ENSG00000128609.14|NDUFA5|pc|chr7:123541095:123542220:-	0	-
#Partially deleted in new
chr7	123546657	123546817	ENSG00000128609.14|NDUFA5|pc|chr7:123546657:123546817:-	0	-
#Deleted in new
chr7	123551367	123551576	ENSG00000128609.14|NDUFA5|pc|chr7:123551367:123551576:-	0	-
#Deleted in new
chr7	123567009	123567088	ENSG00000146809.12|ASB15|pc|chr7:123567009:123567088:+	0	+
#Deleted in new
chr7	123596351	123596438	ENSG00000230442.5|AC006333.1|lncRNA|chr7:123596351:123596438:-	0	-
#Deleted in new
chr7	123619981	123620305	ENSG00000230442.5|AC006333.1|lncRNA|chr7:123619981:123620305:-	0	-
#Partially deleted in new
chr7	123622755	123623160	ENSG00000230442.5|AC006333.1|lncRNA|chr7:123622755:123623160:-	0	-
#Deleted in new
chr7	123622973	123623160	ENSG00000230442.5|AC006333.1|lncRNA|chr7:123622973:123623160:-	0	-
#Deleted in new
chr7	123844244	123844340	ENSG00000106302.9|HYAL4|pc|chr7:123844244:123844340:+	0	+
#Deleted in new
chr7	123845047	123845064	ENSG00000106302.9|HYAL4|pc|chr7:123845047:123845064:+	0	+
#Deleted in new
chr7	123845168	123845685	ENSG00000106302.9|HYAL4|pc|chr7:123845168:123845685:+	0	+
#Deleted in new
chr7	123845646	123845685	ENSG00000106302.9|HYAL4|pc|chr7:123845646:123845685:+	0	+
#Partially deleted in new
chr7	123876025	123876082	ENSG00000106302.9|HYAL4|pc|chr7:123876025:123876082:+	0	+
#Deleted in new
chr7	123925236	123925352	ENSG00000106304.15|SPAM1|pc|chr7:123925236:123925352:+	0	+
#Deleted in new
chr7	123925302	123925531	ENSG00000106304.15|SPAM1|pc|chr7:123925302:123925531:+	0	+
#Deleted in new
chr7	123925313	123925352	ENSG00000106304.15|SPAM1|pc|chr7:123925313:123925352:+	0	+
#Deleted in new
chr7	123925854	123926064	ENSG00000106304.15|SPAM1|pc|chr7:123925854:123926064:+	0	+
#Deleted in new
chr7	123949865	123949983	ENSG00000106304.15|SPAM1|pc|chr7:123949865:123949983:+	0	+
#Deleted in new
chr7	123949871	123949983	ENSG00000106304.15|SPAM1|pc|chr7:123949871:123949983:+	0	+
#Deleted in new
chr7	123970197	123970248	ENSG00000106304.15|SPAM1|pc|chr7:123970197:123970248:+	0	+
#Deleted in new
chr7	123970197	123970296	ENSG00000106304.15|SPAM1|pc|chr7:123970197:123970296:+	0	+
#Deleted in new
chr7	123971006	123971414	ENSG00000106304.15|SPAM1|pc|chr7:123971006:123971414:+	0	+
#Partially deleted in new
chr7	123994927	123995102	ENSG00000241345.1|AC004690.2|lncRNA|chr7:123994927:123995102:+	0	+
#Partially deleted in new
chr7	123994927	123995412	ENSG00000241345.1|AC004690.2|lncRNA|chr7:123994927:123995412:+	0	+
#Deleted in new
chr7	123999022	123999149	ENSG00000241345.1|AC004690.2|lncRNA|chr7:123999022:123999149:+	0	+
#Deleted in new
chr7	124013110	124013207	ENSG00000241345.1|AC004690.2|lncRNA|chr7:124013110:124013207:+	0	+
#Deleted in new
chr7	124334293	124334431	ENSG00000242593.5|AC006148.1|lncRNA|chr7:124334293:124334431:+	0	+
#Deleted in new
chr7	124337379	124337500	ENSG00000241324.1|AC004930.1|lncRNA|chr7:124337379:124337500:-	0	-
#Deleted in new
chr7	124342460	124342561	ENSG00000241324.1|AC004930.1|lncRNA|chr7:124342460:124342561:-	0	-
#Deleted in new
chr7	124349828	124349860	ENSG00000241324.1|AC004930.1|lncRNA|chr7:124349828:124349860:-	0	-
#Deleted in new
chr7	124385597	124385649	ENSG00000242593.5|AC006148.1|lncRNA|chr7:124385597:124385649:+	0	+
#Deleted in new
chr7	12469620	12469888	ENSG00000226690.8|AC013470.2|pc|chr7:12469620:12469888:+	0	+
#Deleted in new
chr7	124782002	124782076	ENSG00000275356.3|C7orf77|pc|chr7:124782002:124782076:-	0	-
#Deleted in new
chr7	12483343	12484015	ENSG00000226690.8|AC013470.2|pc|chr7:12483343:12484015:+	0	+
#Deleted in new
chr7	124848539	124848659	ENSG00000128513.14|POT1|pc|chr7:124848539:124848659:-	0	-
#Deleted in new
chr7	124892701	124892815	ENSG00000128513.14|POT1|pc|chr7:124892701:124892815:-	0	-
#Deleted in new
chr7	124892725	124892815	ENSG00000128513.14|POT1|pc|chr7:124892725:124892815:-	0	-
#Deleted in new
chr7	124915573	124915646	ENSG00000128513.14|POT1|pc|chr7:124915573:124915646:-	0	-
#Partially deleted in new
chr7	124928920	124928999	ENSG00000128513.14|POT1|pc|chr7:124928920:124928999:-	0	-
#Deleted in new
chr7	124929457	124929802	ENSG00000128513.14|POT1|pc|chr7:124929457:124929802:-	0	-
#Deleted in new
chr7	124929558	124929786	ENSG00000128513.14|POT1|pc|chr7:124929558:124929786:-	0	-
#Deleted in new
chr7	124929793	124929825	ENSG00000128513.14|POT1|pc|chr7:124929793:124929825:-	0	-
#Deleted in new
chr7	124929793	124929827	ENSG00000128513.14|POT1|pc|chr7:124929793:124929827:-	0	-
#Deleted in new
chr7	124929793	124929944	ENSG00000128513.14|POT1|pc|chr7:124929793:124929944:-	0	-
#Deleted in new
chr7	124929793	124929981	ENSG00000128513.14|POT1|pc|chr7:124929793:124929981:-	0	-
#Deleted in new
chr7	124929793	124929983	ENSG00000128513.14|POT1|pc|chr7:124929793:124929983:-	0	-
#Deleted in new
chr7	124929872	124930016	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:124929872:124930016:+	0	+
#Deleted in new
chr7	124929897	124930016	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:124929897:124930016:+	0	+
#Deleted in new
chr7	124929914	124930016	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:124929914:124930016:+	0	+
#Deleted in new
chr7	124929920	124930016	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:124929920:124930016:+	0	+
#Deleted in new
chr7	12496428	12496639	ENSG00000226690.8|AC013470.2|pc|chr7:12496428:12496639:+	0	+
#Deleted in new
chr7	124993007	124993199	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:124993007:124993199:+	0	+
#Partially deleted in new
chr7	125000681	125001012	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:125000681:125001012:+	0	+
#Deleted in new
chr7	12504398	12504546	ENSG00000226690.8|AC013470.2|pc|chr7:12504398:12504546:+	0	+
#Deleted in new
chr7	12504423	12504546	ENSG00000226690.8|AC013470.2|pc|chr7:12504423:12504546:+	0	+
#Deleted in new
chr7	12504543	12504546	ENSG00000226690.8|AC013470.2|pc|chr7:12504543:12504546:+	0	+
#Deleted in new
chr7	125089689	125089776	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:125089689:125089776:+	0	+
#Deleted in new
chr7	125101959	125102050	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:125101959:125102050:+	0	+
#Deleted in new
chr7	125116873	125117028	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:125116873:125117028:+	0	+
#Deleted in new
chr7	125118628	125118722	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:125118628:125118722:+	0	+
#Deleted in new
chr7	125122980	125123075	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:125122980:125123075:+	0	+
#Deleted in new
chr7	125125824	125125907	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:125125824:125125907:+	0	+
#Deleted in new
chr7	125125824	125125977	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:125125824:125125977:+	0	+
#Deleted in new
chr7	125138572	125138659	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:125138572:125138659:+	0	+
#Deleted in new
chr7	125172217	125172234	ENSG00000237764.2|AC010099.4|lncRNA|chr7:125172217:125172234:+	0	+
#Partially deleted in new
chr7	125177643	125179315	ENSG00000224897.6|POT1-AS1|lncRNA|chr7:125177643:125179315:+	0	+
#Deleted in new
chr7	125184568	125184613	ENSG00000237764.2|AC010099.4|lncRNA|chr7:125184568:125184613:+	0	+
#Deleted in new
chr7	125186043	125186492	ENSG00000237764.2|AC010099.4|lncRNA|chr7:125186043:125186492:+	0	+
#Partially deleted in new
chr7	125194947	125195084	ENSG00000237764.2|AC010099.4|lncRNA|chr7:125194947:125195084:+	0	+
#Deleted in new
chr7	125229578	125230841	ENSG00000219445.2|AC019155.2|lncRNA|chr7:125229578:125230841:-	0	-
#Deleted in new
chr7	125246343	125246530	ENSG00000219445.2|AC019155.2|lncRNA|chr7:125246343:125246530:-	0	-
#Deleted in new
chr7	125249979	125250057	ENSG00000219445.2|AC019155.2|lncRNA|chr7:125249979:125250057:-	0	-
#Deleted in new
chr7	125264042	125264291	ENSG00000219445.2|AC019155.2|lncRNA|chr7:125264042:125264291:-	0	-
#Partially deleted in new
chr7	12528901	12528928	ENSG00000226690.8|AC013470.2|pc|chr7:12528901:12528928:+	0	+
#Deleted in new
chr7	12530386	12530502	ENSG00000226690.8|AC013470.2|pc|chr7:12530386:12530502:+	0	+
#Deleted in new
chr7	125329681	125329747	ENSG00000237764.2|AC010099.4|lncRNA|chr7:125329681:125329747:+	0	+
#Deleted in new
chr7	125330256	125330403	ENSG00000237764.2|AC010099.4|lncRNA|chr7:125330256:125330403:+	0	+
#Deleted in new
chr7	125335252	125335415	ENSG00000237764.2|AC010099.4|lncRNA|chr7:125335252:125335415:+	0	+
#Deleted in new
chr7	125347124	125347207	ENSG00000237764.2|AC010099.4|lncRNA|chr7:125347124:125347207:+	0	+
#Deleted in new
chr7	125363434	125363516	ENSG00000237764.2|AC010099.4|lncRNA|chr7:125363434:125363516:+	0	+
#Partially deleted in new
chr7	12540919	12542222	ENSG00000226690.8|AC013470.2|pc|chr7:12540919:12542222:+	0	+
#Deleted in new
chr7	12541806	12541910	ENSG00000226690.8|AC013470.2|pc|chr7:12541806:12541910:+	0	+
#Deleted in new
chr7	125461480	125461611	ENSG00000227869.1|AC073486.1|lncRNA|chr7:125461480:125461611:+	0	+
#Deleted in new
chr7	125461480	125461650	ENSG00000227869.1|AC073486.1|lncRNA|chr7:125461480:125461650:+	0	+
#Deleted in new
chr7	125461480	125461869	ENSG00000227869.1|AC073486.1|lncRNA|chr7:125461480:125461869:+	0	+
#Deleted in new
chr7	125466269	125466401	ENSG00000227869.1|AC073486.1|lncRNA|chr7:125466269:125466401:+	0	+
#Partially deleted in new
chr7	12577541	12577759	ENSG00000006747.14|SCIN|pc|chr7:12577541:12577759:+	0	+
#Deleted in new
chr7	12588927	12589069	ENSG00000006747.14|SCIN|pc|chr7:12588927:12589069:+	0	+
#Deleted in new
chr7	12589428	12589573	ENSG00000006747.14|SCIN|pc|chr7:12589428:12589573:+	0	+
#Deleted in new
chr7	12589432	12589573	ENSG00000006747.14|SCIN|pc|chr7:12589432:12589573:+	0	+
#Deleted in new
chr7	125917870	125918118	ENSG00000197462.3|AC003975.1|lncRNA|chr7:125917870:125918118:+	0	+
#Deleted in new
chr7	125920056	125920153	ENSG00000197462.3|AC003975.1|lncRNA|chr7:125920056:125920153:+	0	+
#Deleted in new
chr7	125923693	125923950	ENSG00000197462.3|AC003975.1|lncRNA|chr7:125923693:125923950:+	0	+
#Deleted in new
chr7	125924211	125924387	ENSG00000197462.3|AC003975.1|lncRNA|chr7:125924211:125924387:+	0	+
#Deleted in new
chr7	125933773	125933832	ENSG00000197462.3|AC003975.1|lncRNA|chr7:125933773:125933832:+	0	+
#Deleted in new
chr7	12596269	12596426	ENSG00000006747.14|SCIN|pc|chr7:12596269:12596426:+	0	+
#Deleted in new
chr7	126415228	126415338	ENSG00000241921.1|AC000372.1|lncRNA|chr7:126415228:126415338:+	0	+
#Deleted in new
chr7	126424120	126424185	ENSG00000241921.1|AC000372.1|lncRNA|chr7:126424120:126424185:+	0	+
#Deleted in new
chr7	126447135	126447188	ENSG00000179603.17|GRM8|pc|chr7:126447135:126447188:-	0	-
#Deleted in new
chr7	126465230	126465299	ENSG00000179603.17|GRM8|pc|chr7:126465230:126465299:-	0	-
#Partially deleted in new
chr7	12652587	12653104	ENSG00000006747.14|SCIN|pc|chr7:12652587:12653104:+	0	+
#Partially deleted in new
chr7	12652587	12660179	ENSG00000006747.14|SCIN|pc|chr7:12652587:12660179:+	0	+
#Deleted in new
chr7	12654178	12654485	ENSG00000229233.1|AC011891.1|lncRNA|chr7:12654178:12654485:+	0	+
#Deleted in new
chr7	12654860	12654985	ENSG00000229233.1|AC011891.1|lncRNA|chr7:12654860:12654985:+	0	+
#Deleted in new
chr7	126701756	126701827	ENSG00000179603.17|GRM8|pc|chr7:126701756:126701827:-	0	-
#Deleted in new
chr7	1267352	1267479	ENSG00000233082.1|AC073094.1|lncRNA|chr7:1267352:1267479:+	0	+
#Deleted in new
chr7	12703	12822	ENSG00000283061.1|AC215522.3|lncRNA|chr7:12703:12822:+	0	+
#Deleted in new
chr7	127215126	127215253	ENSG00000236340.5|AC000099.1|lncRNA|chr7:127215126:127215253:+	0	+
#Deleted in new
chr7	127219466	127219702	ENSG00000236340.5|AC000099.1|lncRNA|chr7:127219466:127219702:+	0	+
#Partially deleted in new
chr7	127351397	127351523	ENSG00000224138.1|AC000123.1|lncRNA|chr7:127351397:127351523:+	0	+
#Deleted in new
chr7	127485111	127485804	ENSG00000226770.1|AC000124.1|lncRNA|chr7:127485111:127485804:+	0	+
#Deleted in new
chr7	12758188	12758316	ENSG00000229618.2|AC011287.1|lncRNA|chr7:12758188:12758316:+	0	+
#Partially deleted in new
chr7	127592128	127592237	ENSG00000179562.2|GCC1|pc|chr7:127592128:127592237:-	0	-
#Deleted in new
chr7	127679044	127679265	ENSG00000197157.10|SND1|pc|chr7:127679044:127679265:+	0	+
#Deleted in new
chr7	127685940	127686033	ENSG00000197157.10|SND1|pc|chr7:127685940:127686033:+	0	+
#Deleted in new
chr7	128483026	128483390	ENSG00000165055.15|METTL2B|pc|chr7:128483026:128483390:+	0	+
#Deleted in new
chr7	128488322	128488597	ENSG00000165055.15|METTL2B|pc|chr7:128488322:128488597:+	0	+
#Partially deleted in new
chr7	128501761	128502924	ENSG00000165055.15|METTL2B|pc|chr7:128501761:128502924:+	0	+
#Partially deleted in new
chr7	128501761	128506602	ENSG00000165055.15|METTL2B|pc|chr7:128501761:128506602:+	0	+
#Deleted in new
chr7	128502613	128502832	ENSG00000165055.15|METTL2B|pc|chr7:128502613:128502832:+	0	+
#Deleted in new
chr7	128619045	128619177	ENSG00000242588.5|AC108010.1|lncRNA|chr7:128619045:128619177:+	0	+
#Deleted in new
chr7	128622478	128622694	ENSG00000242588.5|AC108010.1|lncRNA|chr7:128622478:128622694:+	0	+
#Deleted in new
chr7	128667042	128668156	ENSG00000271553.1|AC018638.7|lncRNA|chr7:128667042:128668156:+	0	+
#Deleted in new
chr7	128678045	128678112	ENSG00000205085.11|FAM71F2|pc|chr7:128678045:128678112:+	0	+
#Deleted in new
chr7	128683822	128684246	ENSG00000205085.11|FAM71F2|pc|chr7:128683822:128684246:+	0	+
#Deleted in new
chr7	128690450	128691717	ENSG00000271344.1|AC018638.6|lncRNA|chr7:128690450:128691717:+	0	+
#Deleted in new
chr7	128709060	128709207	ENSG00000135248.15|FAM71F1|pc|chr7:128709060:128709207:+	0	+
#Deleted in new
chr7	128709074	128709207	ENSG00000135248.15|FAM71F1|pc|chr7:128709074:128709207:+	0	+
#Deleted in new
chr7	128709089	128709207	ENSG00000135248.15|FAM71F1|pc|chr7:128709089:128709207:+	0	+
#Partially deleted in new
chr7	128771689	128771807	ENSG00000128595.16|CALU|pc|chr7:128771689:128771807:+	0	+
#Deleted in new
chr7	128853284	128853397	ENSG00000242902.1|FLNC-AS1|lncRNA|chr7:128853284:128853397:-	0	-
#Deleted in new
chr7	128864901	128865010	ENSG00000135253.13|KCP|pc|chr7:128864901:128865010:-	0	-
#Deleted in new
chr7	128865119	128865203	ENSG00000128524.4|ATP6V1F|pc|chr7:128865119:128865203:+	0	+
#Deleted in new
chr7	128906278	128906363	ENSG00000135253.13|KCP|pc|chr7:128906278:128906363:-	0	-
#Deleted in new
chr7	128941278	128941391	ENSG00000128604.19|IRF5|pc|chr7:128941278:128941391:+	0	+
#Deleted in new
chr7	128941278	128941424	ENSG00000128604.19|IRF5|pc|chr7:128941278:128941424:+	0	+
#Deleted in new
chr7	128943058	128943134	ENSG00000128604.19|IRF5|pc|chr7:128943058:128943134:+	0	+
#Deleted in new
chr7	128952526	128953316	ENSG00000275106.1|AC025594.3|lncRNA|chr7:128952526:128953316:-	0	-
#Partially deleted in new
chr7	129482841	129483631	ENSG00000128578.9|STRIP2|pc|chr7:129482841:129483631:+	0	+
#Deleted in new
chr7	129630067	129630168	ENSG00000106459.14|NRF1|pc|chr7:129630067:129630168:+	0	+
#Deleted in new
chr7	129630077	129630168	ENSG00000106459.14|NRF1|pc|chr7:129630077:129630168:+	0	+
#Deleted in new
chr7	129633444	129633780	ENSG00000106459.14|NRF1|pc|chr7:129633444:129633780:+	0	+
#Deleted in new
chr7	129641724	129641822	ENSG00000106459.14|NRF1|pc|chr7:129641724:129641822:+	0	+
#Deleted in new
chr7	129783369	129783487	ENSG00000242078.1|AC084864.1|lncRNA|chr7:129783369:129783487:-	0	-
#Deleted in new
chr7	129784373	129784471	ENSG00000242078.1|AC084864.1|lncRNA|chr7:129784373:129784471:-	0	-
#Deleted in new
chr7	129865014	129865065	ENSG00000186591.11|UBE2H|pc|chr7:129865014:129865065:-	0	-
#Deleted in new
chr7	129982351	129982590	ENSG00000244036.3|AC073320.1|lncRNA|chr7:129982351:129982590:+	0	+
#Deleted in new
chr7	130023012	130023070	ENSG00000244036.3|AC073320.1|lncRNA|chr7:130023012:130023070:+	0	+
#Deleted in new
chr7	130036649	130036966	ENSG00000091732.15|ZC3HC1|pc|chr7:130036649:130036966:-	0	-
#Partially deleted in new
chr7	130039274	130039341	ENSG00000091732.15|ZC3HC1|pc|chr7:130039274:130039341:-	0	-
#Deleted in new
chr7	130043386	130043431	ENSG00000091732.15|ZC3HC1|pc|chr7:130043386:130043431:-	0	-
#Deleted in new
chr7	130043627	130043880	ENSG00000091732.15|ZC3HC1|pc|chr7:130043627:130043880:-	0	-
#Deleted in new
chr7	130117518	130117666	ENSG00000128607.13|KLHDC10|pc|chr7:130117518:130117666:+	0	+
#Partially deleted in new
chr7	130175175	130175609	ENSG00000146842.16|TMEM209|pc|chr7:130175175:130175609:-	0	-
#Deleted in new
chr7	130199843	130199955	ENSG00000240571.1|AC087071.2|lncRNA|chr7:130199843:130199955:+	0	+
#Deleted in new
chr7	130206876	130206978	ENSG00000146842.16|TMEM209|pc|chr7:130206876:130206978:-	0	-
#Partially deleted in new
chr7	130426628	130426730	ENSG00000106477.18|CEP41|pc|chr7:130426628:130426730:-	0	-
#Partially deleted in new
chr7	130426645	130426713	ENSG00000106477.18|CEP41|pc|chr7:130426645:130426713:-	0	-
#Partially deleted in new
chr7	130426645	130426759	ENSG00000106477.18|CEP41|pc|chr7:130426645:130426759:-	0	-
#Deleted in new
chr7	130686443	130686543	ENSG00000213265.8|TSGA13|pc|chr7:130686443:130686543:-	0	-
#Deleted in new
chr7	130686443	130686565	ENSG00000213265.8|TSGA13|pc|chr7:130686443:130686565:-	0	-
#Deleted in new
chr7	130686443	130686574	ENSG00000213265.8|TSGA13|pc|chr7:130686443:130686574:-	0	-
#Deleted in new
chr7	130790207	130791724	ENSG00000271522.1|AC016831.6|lncRNA|chr7:130790207:130791724:+	0	+
#Deleted in new
chr7	130862123	130862202	ENSG00000233559.1|LINC00513|lncRNA|chr7:130862123:130862202:+	0	+
#Split in new
chr7	130876808	130882736	ENSG00000226380.9|AC016831.1|lncRNA|chr7:130876808:130882736:-	0	-
#Partially deleted in new
chr7	130914963	130915102	ENSG00000233559.1|LINC00513|lncRNA|chr7:130914963:130915102:+	0	+
#Deleted in new
chr7	130967388	130967517	ENSG00000231721.6|LINC-PINT|lncRNA|chr7:130967388:130967517:-	0	-
#Deleted in new
chr7	131002196	131002320	ENSG00000231721.6|LINC-PINT|lncRNA|chr7:131002196:131002320:-	0	-
#Deleted in new
chr7	13102007	13102389	ENSG00000229618.2|AC011287.1|lncRNA|chr7:13102007:13102389:+	0	+
#Deleted in new
chr7	131042835	131042931	ENSG00000231721.6|LINC-PINT|lncRNA|chr7:131042835:131042931:-	0	-
#Deleted in new
chr7	131088319	131088474	ENSG00000231721.6|LINC-PINT|lncRNA|chr7:131088319:131088474:-	0	-
#Deleted in new
chr7	131309743	131310773	ENSG00000236753.5|MKLN1-AS|lncRNA|chr7:131309743:131310773:-	0	-
#Deleted in new
chr7	131311129	131311223	ENSG00000236753.5|MKLN1-AS|lncRNA|chr7:131311129:131311223:-	0	-
#Deleted in new
chr7	131323364	131323868	ENSG00000236753.5|MKLN1-AS|lncRNA|chr7:131323364:131323868:-	0	-
#Deleted in new
chr7	131323593	131323868	ENSG00000236753.5|MKLN1-AS|lncRNA|chr7:131323593:131323868:-	0	-
#Deleted in new
chr7	131323631	131323868	ENSG00000236753.5|MKLN1-AS|lncRNA|chr7:131323631:131323868:-	0	-
#Deleted in new
chr7	131323685	131323868	ENSG00000236753.5|MKLN1-AS|lncRNA|chr7:131323685:131323868:-	0	-
#Deleted in new
chr7	131323688	131323868	ENSG00000236753.5|MKLN1-AS|lncRNA|chr7:131323688:131323868:-	0	-
#Deleted in new
chr7	131323776	131323868	ENSG00000236753.5|MKLN1-AS|lncRNA|chr7:131323776:131323868:-	0	-
#Deleted in new
chr7	131324251	131324425	ENSG00000236753.5|MKLN1-AS|lncRNA|chr7:131324251:131324425:-	0	-
#Deleted in new
chr7	131324302	131324425	ENSG00000236753.5|MKLN1-AS|lncRNA|chr7:131324302:131324425:-	0	-
#Deleted in new
chr7	131471640	131472267	ENSG00000128585.17|MKLN1|pc|chr7:131471640:131472267:+	0	+
#Deleted in new
chr7	131910219	131910571	ENSG00000224865.7|AC009518.1|lncRNA|chr7:131910219:131910571:+	0	+
#Deleted in new
chr7	131932122	131932309	ENSG00000224865.7|AC009518.1|lncRNA|chr7:131932122:131932309:+	0	+
#Deleted in new
chr7	13217544	13217668	ENSG00000229618.2|AC011287.1|lncRNA|chr7:13217544:13217668:+	0	+
#Deleted in new
chr7	132365923	132366067	ENSG00000223436.1|AC011625.1|lncRNA|chr7:132365923:132366067:+	0	+
#Deleted in new
chr7	132661990	132662082	ENSG00000183470.9|FLJ40288|lncRNA|chr7:132661990:132662082:+	0	+
#Partially deleted in new
chr7	132671935	132672294	ENSG00000183470.9|FLJ40288|lncRNA|chr7:132671935:132672294:+	0	+
#Deleted in new
chr7	132724776	132725032	ENSG00000183470.9|FLJ40288|lncRNA|chr7:132724776:132725032:+	0	+
#Partially deleted in new
chr7	132758969	132759405	ENSG00000225881.1|AC009365.1|lncRNA|chr7:132758969:132759405:+	0	+
#Deleted in new
chr7	13310208	13310323	ENSG00000229618.2|AC011287.1|lncRNA|chr7:13310208:13310323:+	0	+
#Deleted in new
chr7	133396138	133396414	ENSG00000131558.14|EXOC4|pc|chr7:133396138:133396414:+	0	+
#Partially deleted in new
chr7	13340102	13340260	ENSG00000237713.1|AC011287.2|lncRNA|chr7:13340102:13340260:-	0	-
#Partially deleted in new
chr7	133447299	133447369	ENSG00000131558.14|EXOC4|pc|chr7:133447299:133447369:+	0	+
#Deleted in new
chr7	13361443	13361562	ENSG00000237713.1|AC011287.2|lncRNA|chr7:13361443:13361562:-	0	-
#Deleted in new
chr7	13364332	13364540	ENSG00000237713.1|AC011287.2|lncRNA|chr7:13364332:13364540:-	0	-
#Deleted in new
chr7	13365011	13365049	ENSG00000237713.1|AC011287.2|lncRNA|chr7:13365011:13365049:-	0	-
#Deleted in new
chr7	133895062	133895195	ENSG00000131558.14|EXOC4|pc|chr7:133895062:133895195:+	0	+
#Deleted in new
chr7	134066259	134066589	ENSG00000131558.14|EXOC4|pc|chr7:134066259:134066589:+	0	+
#Partially deleted in new
chr7	134285855	134286055	ENSG00000231098.1|AC008154.2|lncRNA|chr7:134285855:134286055:+	0	+
#Deleted in new
chr7	134416289	134416412	ENSG00000273297.1|AC009275.1|lncRNA|chr7:134416289:134416412:-	0	-
#Partially deleted in new
chr7	134417781	134418219	ENSG00000273297.1|AC009275.1|lncRNA|chr7:134417781:134418219:-	0	-
#Deleted in new
chr7	134417971	134418126	ENSG00000273297.1|AC009275.1|lncRNA|chr7:134417971:134418126:-	0	-
#Deleted in new
chr7	134418470	134418974	ENSG00000273297.1|AC009275.1|lncRNA|chr7:134418470:134418974:-	0	-
#Deleted in new
chr7	134418626	134418974	ENSG00000273297.1|AC009275.1|lncRNA|chr7:134418626:134418974:-	0	-
#Deleted in new
chr7	134432313	134432416	ENSG00000273297.1|AC009275.1|lncRNA|chr7:134432313:134432416:-	0	-
#Deleted in new
chr7	134432313	134432431	ENSG00000273297.1|AC009275.1|lncRNA|chr7:134432313:134432431:-	0	-
#Deleted in new
chr7	134432313	134432453	ENSG00000273297.1|AC009275.1|lncRNA|chr7:134432313:134432453:-	0	-
#Duplicated in new
chr7	134527591	134527977	ENSG00000198074.9|AKR1B10|pc|chr7:134527591:134527977:+	0	+
#Duplicated in new
chr7	134527619	134527977	ENSG00000198074.9|AKR1B10|pc|chr7:134527619:134527977:+	0	+
#Deleted in new
chr7	134549135	134549249	ENSG00000227471.8|AKR1B15|pc|chr7:134549135:134549249:+	0	+
#Deleted in new
chr7	134556735	134556859	ENSG00000227471.8|AKR1B15|pc|chr7:134556735:134556859:+	0	+
#Deleted in new
chr7	134564597	134564769	ENSG00000227471.8|AKR1B15|pc|chr7:134564597:134564769:+	0	+
#Deleted in new
chr7	134564619	134564769	ENSG00000227471.8|AKR1B15|pc|chr7:134564619:134564769:+	0	+
#Partially deleted in new
chr7	134564787	134565546	ENSG00000227471.8|AKR1B15|pc|chr7:134564787:134565546:+	0	+
#Partially deleted in new
chr7	134569412	134570474	ENSG00000227471.8|AKR1B15|pc|chr7:134569412:134570474:+	0	+
#Deleted in new
chr7	134684143	134684215	ENSG00000224375.1|AC009276.1|lncRNA|chr7:134684143:134684215:+	0	+
#Deleted in new
chr7	134686170	134686325	ENSG00000224375.1|AC009276.1|lncRNA|chr7:134686170:134686325:+	0	+
#Deleted in new
chr7	134687964	134687990	ENSG00000224375.1|AC009276.1|lncRNA|chr7:134687964:134687990:+	0	+
#Deleted in new
chr7	134744251	134744363	ENSG00000122786.19|CALD1|pc|chr7:134744251:134744363:+	0	+
#Deleted in new
chr7	135010041	135012511	ENSG00000146856.14|AGBL3|pc|chr7:135010041:135012511:+	0	+
#Deleted in new
chr7	135051021	135051154	ENSG00000146856.14|AGBL3|pc|chr7:135051021:135051154:+	0	+
#Deleted in new
chr7	135092362	135094582	ENSG00000122783.16|C7orf49|pc|chr7:135092362:135094582:-	0	-
#Deleted in new
chr7	135093378	135094582	ENSG00000122783.16|C7orf49|pc|chr7:135093378:135094582:-	0	-
#Deleted in new
chr7	135152817	135153133	ENSG00000146859.6|TMEM140|pc|chr7:135152817:135153133:+	0	+
#Deleted in new
chr7	135169421	135169459	ENSG00000122783.16|C7orf49|pc|chr7:135169421:135169459:-	0	-
#Deleted in new
chr7	135169421	135169474	ENSG00000122783.16|C7orf49|pc|chr7:135169421:135169474:-	0	-
#Deleted in new
chr7	135170275	135170524	ENSG00000122783.16|C7orf49|pc|chr7:135170275:135170524:-	0	-
#Deleted in new
chr7	135170398	135170511	ENSG00000122783.16|C7orf49|pc|chr7:135170398:135170511:-	0	-
#Deleted in new
chr7	135170398	135170661	ENSG00000122783.16|C7orf49|pc|chr7:135170398:135170661:-	0	-
#Deleted in new
chr7	135170651	135170675	ENSG00000122783.16|C7orf49|pc|chr7:135170651:135170675:-	0	-
#Deleted in new
chr7	135170651	135170695	ENSG00000122783.16|C7orf49|pc|chr7:135170651:135170695:-	0	-
#Deleted in new
chr7	135170651	135170738	ENSG00000122783.16|C7orf49|pc|chr7:135170651:135170738:-	0	-
#Deleted in new
chr7	135170651	135170795	ENSG00000122783.16|C7orf49|pc|chr7:135170651:135170795:-	0	-
#Partially deleted in new
chr7	135198400	135199715	ENSG00000231794.5|AC009542.1|lncRNA|chr7:135198400:135199715:+	0	+
#Deleted in new
chr7	135199558	135199715	ENSG00000231794.5|AC009542.1|lncRNA|chr7:135199558:135199715:+	0	+
#Deleted in new
chr7	135199607	135199715	ENSG00000231794.5|AC009542.1|lncRNA|chr7:135199607:135199715:+	0	+
#Partially deleted in new
chr7	135199810	135199945	ENSG00000231794.5|AC009542.1|lncRNA|chr7:135199810:135199945:+	0	+
#Deleted in new
chr7	135384289	135384731	ENSG00000080802.18|CNOT4|pc|chr7:135384289:135384731:-	0	-
#Deleted in new
chr7	135688903	135689028	ENSG00000243317.7|C7orf73|pc|chr7:135688903:135689028:+	0	+
#Partially deleted in new
chr7	135729598	135730281	ENSG00000189320.8|FAM180A|pc|chr7:135729598:135730281:-	0	-
#Partially deleted in new
chr7	135729606	135730281	ENSG00000189320.8|FAM180A|pc|chr7:135729606:135730281:-	0	-
#Deleted in new
chr7	135852	136271	ENSG00000242474.2|AC093627.5|lncRNA|chr7:135852:136271:-	0	-
#Deleted in new
chr7	135932208	135932881	ENSG00000224746.1|AC015987.1|lncRNA|chr7:135932208:135932881:+	0	+
#Deleted in new
chr7	136025760	136025788	ENSG00000230649.2|AC024084.1|lncRNA|chr7:136025760:136025788:+	0	+
#Deleted in new
chr7	136084387	136084668	ENSG00000230649.2|AC024084.1|lncRNA|chr7:136084387:136084668:+	0	+
#Deleted in new
chr7	136092924	136093036	ENSG00000232053.6|AC078845.1|lncRNA|chr7:136092924:136093036:+	0	+
#Deleted in new
chr7	136092956	136093036	ENSG00000232053.6|AC078845.1|lncRNA|chr7:136092956:136093036:+	0	+
#Deleted in new
chr7	136117070	136117188	ENSG00000232053.6|AC078845.1|lncRNA|chr7:136117070:136117188:+	0	+
#Deleted in new
chr7	136242149	136242371	ENSG00000232053.6|AC078845.1|lncRNA|chr7:136242149:136242371:+	0	+
#Deleted in new
chr7	136328981	136329097	ENSG00000232053.6|AC078845.1|lncRNA|chr7:136328981:136329097:+	0	+
#Deleted in new
chr7	13636645	13636732	ENSG00000229618.2|AC011287.1|lncRNA|chr7:13636645:13636732:+	0	+
#Deleted in new
chr7	136437051	136437163	ENSG00000232053.6|AC078845.1|lncRNA|chr7:136437051:136437163:+	0	+
#Deleted in new
chr7	136437051	136437382	ENSG00000232053.6|AC078845.1|lncRNA|chr7:136437051:136437382:+	0	+
#Deleted in new
chr7	136437051	136437410	ENSG00000232053.6|AC078845.1|lncRNA|chr7:136437051:136437410:+	0	+
#Deleted in new
chr7	136437051	136437426	ENSG00000232053.6|AC078845.1|lncRNA|chr7:136437051:136437426:+	0	+
#Deleted in new
chr7	136752263	136752490	ENSG00000234352.9|AC009264.1|lncRNA|chr7:136752263:136752490:-	0	-
#Deleted in new
chr7	136752266	136752490	ENSG00000234352.9|AC009264.1|lncRNA|chr7:136752266:136752490:-	0	-
#Deleted in new
chr7	136785698	136785891	ENSG00000234352.9|AC009264.1|lncRNA|chr7:136785698:136785891:-	0	-
#Deleted in new
chr7	136785831	136785891	ENSG00000234352.9|AC009264.1|lncRNA|chr7:136785831:136785891:-	0	-
#Deleted in new
chr7	136906907	136906965	ENSG00000234352.9|AC009264.1|lncRNA|chr7:136906907:136906965:-	0	-
#Deleted in new
chr7	136907847	136907973	ENSG00000234352.9|AC009264.1|lncRNA|chr7:136907847:136907973:-	0	-
#Deleted in new
chr7	136951002	136951080	ENSG00000181072.11|CHRM2|pc|chr7:136951002:136951080:+	0	+
#Partially deleted in new
chr7	13702315	13702376	ENSG00000229618.2|AC011287.1|lncRNA|chr7:13702315:13702376:+	0	+
#Deleted in new
chr7	137032793	137032913	ENSG00000234352.9|AC009264.1|lncRNA|chr7:137032793:137032913:-	0	-
#Deleted in new
chr7	13704061	13704149	ENSG00000229618.2|AC011287.1|lncRNA|chr7:13704061:13704149:+	0	+
#Deleted in new
chr7	13704061	13704540	ENSG00000229618.2|AC011287.1|lncRNA|chr7:13704061:13704540:+	0	+
#Deleted in new
chr7	13717214	13717896	ENSG00000229618.2|AC011287.1|lncRNA|chr7:13717214:13717896:+	0	+
#Partially deleted in new
chr7	13717776	13718235	ENSG00000229618.2|AC011287.1|lncRNA|chr7:13717776:13718235:+	0	+
#Deleted in new
chr7	137181607	137181723	ENSG00000234352.9|AC009264.1|lncRNA|chr7:137181607:137181723:-	0	-
#Deleted in new
chr7	137181607	137181771	ENSG00000234352.9|AC009264.1|lncRNA|chr7:137181607:137181771:-	0	-
#Deleted in new
chr7	137181869	137182107	ENSG00000234352.9|AC009264.1|lncRNA|chr7:137181869:137182107:-	0	-
#Deleted in new
chr7	13728578	13728690	ENSG00000229618.2|AC011287.1|lncRNA|chr7:13728578:13728690:+	0	+
#Deleted in new
chr7	137350368	137350466	ENSG00000228031.2|AC078842.1|lncRNA|chr7:137350368:137350466:-	0	-
#Deleted in new
chr7	137493782	137493836	ENSG00000157680.15|DGKI|pc|chr7:137493782:137493836:-	0	-
#Partially deleted in new
chr7	137922589	137922767	ENSG00000182158.14|CREB3L2|pc|chr7:137922589:137922767:-	0	-
#Deleted in new
chr7	137956583	137956645	ENSG00000237243.1|AC022173.1|lncRNA|chr7:137956583:137956645:+	0	+
#Deleted in new
chr7	138163439	138163502	ENSG00000225559.1|AC083867.1|lncRNA|chr7:138163439:138163502:+	0	+
#Deleted in new
chr7	138164243	138164637	ENSG00000225559.1|AC083867.1|lncRNA|chr7:138164243:138164637:+	0	+
#Partially deleted in new
chr7	138659863	138663571	ENSG00000157703.15|SVOPL|pc|chr7:138659863:138663571:-	0	-
#Deleted in new
chr7	138664209	138664224	ENSG00000157703.15|SVOPL|pc|chr7:138664209:138664224:-	0	-
#Partially deleted in new
chr7	138802899	138806759	ENSG00000214128.10|TMEM213|pc|chr7:138802899:138806759:+	0	+
#Partially deleted in new
chr7	139045915	139047853	ENSG00000105939.12|ZC3HAV1|pc|chr7:139045915:139047853:-	0	-
#Partially deleted in new
chr7	139276096	139277714	ENSG00000157741.14|UBN2|pc|chr7:139276096:139277714:+	0	+
#Deleted in new
chr7	139339456	139339506	ENSG00000164898.12|FMC1|pc|chr7:139339456:139339506:+	0	+
#Deleted in new
chr7	139344896	139344990	ENSG00000164898.12|FMC1|pc|chr7:139344896:139344990:+	0	+
#Partially deleted in new
chr7	139416124	139417729	ENSG00000146963.17|LUC7L2|pc|chr7:139416124:139417729:+	0	+
#Partially deleted in new
chr7	139452689	139453707	ENSG00000188883.4|KLRG2|pc|chr7:139452689:139453707:-	0	-
#Partially deleted in new
chr7	139780739	139780824	ENSG00000059377.16|TBXAS1|pc|chr7:139780739:139780824:+	0	+
#Partially deleted in new
chr7	139782487	139782564	ENSG00000059377.16|TBXAS1|pc|chr7:139782487:139782564:+	0	+
#Partially deleted in new
chr7	139789263	139789622	ENSG00000059377.16|TBXAS1|pc|chr7:139789263:139789622:+	0	+
#Deleted in new
chr7	139906100	139906198	ENSG00000059377.16|TBXAS1|pc|chr7:139906100:139906198:+	0	+
#Deleted in new
chr7	140095617	140095711	ENSG00000006459.10|KDM7A|pc|chr7:140095617:140095711:-	0	-
#Partially deleted in new
chr7	140293692	140295352	ENSG00000157800.17|SLC37A3|pc|chr7:140293692:140295352:-	0	-
#Deleted in new
chr7	140295984	140296137	ENSG00000157800.17|SLC37A3|pc|chr7:140295984:140296137:-	0	-
#Deleted in new
chr7	140297299	140297523	ENSG00000157800.17|SLC37A3|pc|chr7:140297299:140297523:-	0	-
#Deleted in new
chr7	140379213	140379307	ENSG00000157800.17|SLC37A3|pc|chr7:140379213:140379307:-	0	-
#Deleted in new
chr7	140379258	140379471	ENSG00000157800.17|SLC37A3|pc|chr7:140379258:140379471:-	0	-
#Partially deleted in new
chr7	140400335	140402822	ENSG00000157800.17|SLC37A3|pc|chr7:140400335:140402822:-	0	-
#Deleted in new
chr7	140460121	140460243	ENSG00000133606.10|MKRN1|pc|chr7:140460121:140460243:-	0	-
#Deleted in new
chr7	140472202	140472405	ENSG00000133606.10|MKRN1|pc|chr7:140472202:140472405:-	0	-
#Deleted in new
chr7	140473243	140473332	ENSG00000133606.10|MKRN1|pc|chr7:140473243:140473332:-	0	-
#Deleted in new
chr7	140473774	140473827	ENSG00000133606.10|MKRN1|pc|chr7:140473774:140473827:-	0	-
#Deleted in new
chr7	140474380	140474489	ENSG00000133606.10|MKRN1|pc|chr7:140474380:140474489:-	0	-
#Deleted in new
chr7	140475217	140475335	ENSG00000133606.10|MKRN1|pc|chr7:140475217:140475335:-	0	-
#Split in new
chr7	140543577	140544766	ENSG00000146966.12|DENND2A|pc|chr7:140543577:140544766:-	0	-
#Partially deleted in new
chr7	140695335	140696820	ENSG00000240889.1|NDUFB2-AS1|lncRNA|chr7:140695335:140696820:-	0	-
#Deleted in new
chr7	140695771	140695945	ENSG00000133597.10|ADCK2|pc|chr7:140695771:140695945:+	0	+
#Deleted in new
chr7	140695918	140696002	ENSG00000090266.12|NDUFB2|pc|chr7:140695918:140696002:+	0	+
#Deleted in new
chr7	140696026	140696261	ENSG00000133597.10|ADCK2|pc|chr7:140696026:140696261:+	0	+
#Deleted in new
chr7	140696987	140697074	ENSG00000090266.12|NDUFB2|pc|chr7:140696987:140697074:+	0	+
#Deleted in new
chr7	140696991	140697074	ENSG00000090266.12|NDUFB2|pc|chr7:140696991:140697074:+	0	+
#Deleted in new
chr7	140697156	140697221	ENSG00000090266.12|NDUFB2|pc|chr7:140697156:140697221:+	0	+
#Deleted in new
chr7	140697223	140697391	ENSG00000090266.12|NDUFB2|pc|chr7:140697223:140697391:+	0	+
#Deleted in new
chr7	140698074	140698268	ENSG00000090266.12|NDUFB2|pc|chr7:140698074:140698268:+	0	+
#Deleted in new
chr7	140700192	140700218	ENSG00000090266.12|NDUFB2|pc|chr7:140700192:140700218:+	0	+
#Deleted in new
chr7	140700696	140701104	ENSG00000090266.12|NDUFB2|pc|chr7:140700696:140701104:+	0	+
#Deleted in new
chr7	140700869	140700959	ENSG00000090266.12|NDUFB2|pc|chr7:140700869:140700959:+	0	+
#Deleted in new
chr7	140700873	140700959	ENSG00000090266.12|NDUFB2|pc|chr7:140700873:140700959:+	0	+
#Deleted in new
chr7	140701844	140702054	ENSG00000090266.12|NDUFB2|pc|chr7:140701844:140702054:+	0	+
#Partially deleted in new
chr7	140704859	140705662	ENSG00000090266.12|NDUFB2|pc|chr7:140704859:140705662:+	0	+
#Partially deleted in new
chr7	140706118	140706500	ENSG00000090266.12|NDUFB2|pc|chr7:140706118:140706500:+	0	+
#Partially deleted in new
chr7	141009674	141010094	ENSG00000090263.15|MRPS33|pc|chr7:141009674:141010094:-	0	-
#Deleted in new
chr7	141297094	141297125	ENSG00000261115.5|TMEM178B|pc|chr7:141297094:141297125:+	0	+
#Deleted in new
chr7	141297128	141297135	ENSG00000261115.5|TMEM178B|pc|chr7:141297128:141297135:+	0	+
#Deleted in new
chr7	141512973	141513183	ENSG00000261797.1|AC073878.2|lncRNA|chr7:141512973:141513183:-	0	-
#Deleted in new
chr7	141530915	141531243	ENSG00000261570.1|AC073878.1|lncRNA|chr7:141530915:141531243:-	0	-
#Deleted in new
chr7	141531072	141531243	ENSG00000261570.1|AC073878.1|lncRNA|chr7:141531072:141531243:-	0	-
#Deleted in new
chr7	141547331	141547400	ENSG00000261570.1|AC073878.1|lncRNA|chr7:141547331:141547400:-	0	-
#Deleted in new
chr7	141562106	141562110	ENSG00000006530.15|AGK|pc|chr7:141562106:141562110:+	0	+
#Deleted in new
chr7	141711757	141711800	ENSG00000228775.7|WEE2-AS1|lncRNA|chr7:141711757:141711800:-	0	-
#Deleted in new
chr7	141727991	141728145	ENSG00000228775.7|WEE2-AS1|lncRNA|chr7:141727991:141728145:-	0	-
#Deleted in new
chr7	141737382	141737541	ENSG00000228775.7|WEE2-AS1|lncRNA|chr7:141737382:141737541:-	0	-
#Deleted in new
chr7	141737382	141737567	ENSG00000228775.7|WEE2-AS1|lncRNA|chr7:141737382:141737567:-	0	-
#Deleted in new
chr7	141737382	141737775	ENSG00000228775.7|WEE2-AS1|lncRNA|chr7:141737382:141737775:-	0	-
#Deleted in new
chr7	141741748	141741792	ENSG00000106028.10|SSBP1|pc|chr7:141741748:141741792:+	0	+
#Deleted in new
chr7	141741748	141741798	ENSG00000106028.10|SSBP1|pc|chr7:141741748:141741798:+	0	+
#Partially deleted in new
chr7	141745495	141746526	ENSG00000106028.10|SSBP1|pc|chr7:141745495:141746526:+	0	+
#Deleted in new
chr7	141787722	141787922	ENSG00000106028.10|SSBP1|pc|chr7:141787722:141787922:+	0	+
#Duplicated in new
chr7	141790216	141791367	ENSG00000127366.5|TAS2R5|pc|chr7:141790216:141791367:+	0	+
#Deleted in new
chr7	142004389	142004488	ENSG00000257335.8|MGAM|pc|chr7:142004389:142004488:+	0	+
#Deleted in new
chr7	142208219	142208306	ENSG00000257743.8|MGAM2|pc|chr7:142208219:142208306:+	0	+
#Deleted in new
chr7	142285749	142285849	ENSG00000241881.1|AC245088.1|lncRNA|chr7:142285749:142285849:+	0	+
#Deleted in new
chr7	143255263	143255421	ENSG00000231840.1|AC073342.1|lncRNA|chr7:143255263:143255421:-	0	-
#Deleted in new
chr7	143263147	143263207	ENSG00000197448.13|GSTK1|pc|chr7:143263147:143263207:+	0	+
#Deleted in new
chr7	143289587	143289656	ENSG00000106144.19|CASP2|pc|chr7:143289587:143289656:+	0	+
#Deleted in new
chr7	143293146	143293226	ENSG00000106144.19|CASP2|pc|chr7:143293146:143293226:+	0	+
#Partially deleted in new
chr7	143363898	143364229	ENSG00000272619.1|AC093673.2|lncRNA|chr7:143363898:143364229:+	0	+
#Partially deleted in new
chr7	143407812	143407886	ENSG00000229153.5|EPHA1-AS1|lncRNA|chr7:143407812:143407886:+	0	+
#Partially deleted in new
chr7	143407832	143407890	ENSG00000229153.5|EPHA1-AS1|lncRNA|chr7:143407832:143407890:+	0	+
#Partially deleted in new
chr7	1434209	1435147	ENSG00000164877.18|MICALL2|pc|chr7:1434209:1435147:-	0	-
#Partially deleted in new
chr7	1434358	1434899	ENSG00000164877.18|MICALL2|pc|chr7:1434358:1434899:-	0	-
#Partially deleted in new
chr7	1434359	1434672	ENSG00000164877.18|MICALL2|pc|chr7:1434359:1434672:-	0	-
#Partially deleted in new
chr7	1434365	1434672	ENSG00000164877.18|MICALL2|pc|chr7:1434365:1434672:-	0	-
#Deleted in new
chr7	143714774	143714877	ENSG00000170379.19|TCAF2|pc|chr7:143714774:143714877:+	0	+
#Deleted in new
chr7	143715845	143716000	ENSG00000170379.19|TCAF2|pc|chr7:143715845:143716000:+	0	+
#Deleted in new
chr7	143715869	143716000	ENSG00000170379.19|TCAF2|pc|chr7:143715869:143716000:+	0	+
#Partially deleted in new
chr7	143720805	143720985	ENSG00000170379.19|TCAF2|pc|chr7:143720805:143720985:+	0	+
#Partially deleted in new
chr7	143727412	143730409	ENSG00000170379.19|TCAF2|pc|chr7:143727412:143730409:+	0	+
#Deleted in new
chr7	144058467	144058845	ENSG00000221836.3|OR2A5|pc|chr7:144058467:144058845:+	0	+
#Split in new
chr7	144095056	144098953	ENSG00000221858.3|OR2A12|pc|chr7:144095056:144098953:+	0	+
#Deleted in new
chr7	144207689	144207804	ENSG00000244198.5|AC004889.1|lncRNA|chr7:144207689:144207804:+	0	+
#Deleted in new
chr7	144207691	144207804	ENSG00000244198.5|AC004889.1|lncRNA|chr7:144207691:144207804:+	0	+
#Deleted in new
chr7	144207692	144207804	ENSG00000244198.5|AC004889.1|lncRNA|chr7:144207692:144207804:+	0	+
#Deleted in new
chr7	144214013	144214223	ENSG00000244198.5|AC004889.1|lncRNA|chr7:144214013:144214223:+	0	+
#Deleted in new
chr7	144215858	144215912	ENSG00000244198.5|AC004889.1|lncRNA|chr7:144215858:144215912:+	0	+
#Deleted in new
chr7	144243746	144243752	ENSG00000244198.5|AC004889.1|lncRNA|chr7:144243746:144243752:+	0	+
#Deleted in new
chr7	144243746	144243831	ENSG00000244198.5|AC004889.1|lncRNA|chr7:144243746:144243831:+	0	+
#Deleted in new
chr7	144243746	144243835	ENSG00000244198.5|AC004889.1|lncRNA|chr7:144243746:144243835:+	0	+
#Deleted in new
chr7	144264700	144264792	ENSG00000243896.4|OR2A7|pc|chr7:144264700:144264792:-	0	-
#Deleted in new
chr7	144307144	144307232	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144307144:144307232:-	0	-
#Deleted in new
chr7	144307147	144307232	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144307147:144307232:-	0	-
#Partially deleted in new
chr7	144311882	144311939	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144311882:144311939:-	0	-
#Partially deleted in new
chr7	144311883	144311936	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144311883:144311936:-	0	-
#Partially deleted in new
chr7	144311883	144311936	ENSG00000284644.1|AC074386.1|lncRNA|chr7:144311883:144311936:-	0	-
#Partially deleted in new
chr7	144311883	144311939	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144311883:144311939:-	0	-
#Split in new
chr7	144318120	144322668	ENSG00000221970.2|OR2A1|pc|chr7:144318120:144322668:+	0	+
#Deleted in new
chr7	144335078	144335132	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144335078:144335132:-	0	-
#Deleted in new
chr7	144336767	144336977	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144336767:144336977:-	0	-
#Deleted in new
chr7	144343170	144343298	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144343170:144343298:-	0	-
#Deleted in new
chr7	144343186	144343298	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144343186:144343298:-	0	-
#Deleted in new
chr7	144343186	144343298	ENSG00000284644.1|AC074386.1|lncRNA|chr7:144343186:144343298:-	0	-
#Deleted in new
chr7	144343186	144343299	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144343186:144343299:-	0	-
#Deleted in new
chr7	144343186	144343301	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144343186:144343301:-	0	-
#Deleted in new
chr7	144343241	144343298	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144343241:144343298:-	0	-
#Deleted in new
chr7	144349103	144349443	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144349103:144349443:-	0	-
#Partially deleted in new
chr7	144354031	144354160	ENSG00000244479.7|OR2A1-AS1|lncRNA|chr7:144354031:144354160:-	0	-
#Partially deleted in new
chr7	144354031	144354160	ENSG00000284644.1|AC074386.1|lncRNA|chr7:144354031:144354160:-	0	-
#Deleted in new
chr7	144404555	144404680	ENSG00000106410.14|NOBOX|pc|chr7:144404555:144404680:-	0	-
#Deleted in new
chr7	144443	144811	ENSG00000242474.2|AC093627.5|lncRNA|chr7:144443:144811:-	0	-
#Deleted in new
chr7	144709284	144709334	ENSG00000196511.14|TPK1|pc|chr7:144709284:144709334:-	0	-
#Deleted in new
chr7	144709423	144709482	ENSG00000196511.14|TPK1|pc|chr7:144709423:144709482:-	0	-
#Deleted in new
chr7	144739272	144739477	ENSG00000196511.14|TPK1|pc|chr7:144739272:144739477:-	0	-
#Deleted in new
chr7	144836330	144836395	ENSG00000196511.14|TPK1|pc|chr7:144836330:144836395:-	0	-
#Deleted in new
chr7	145293	145415	ENSG00000242474.2|AC093627.5|lncRNA|chr7:145293:145415:-	0	-
#Deleted in new
chr7	145293	145430	ENSG00000242474.2|AC093627.5|lncRNA|chr7:145293:145430:-	0	-
#Deleted in new
chr7	145681108	145681369	ENSG00000230746.1|AC006007.1|lncRNA|chr7:145681108:145681369:-	0	-
#Deleted in new
chr7	1459936	1460267	ENSG00000225981.1|AC102953.1|lncRNA|chr7:1459936:1460267:+	0	+
#Deleted in new
chr7	146050061	146050366	ENSG00000280144.1|AC073308.1|lncRNA|chr7:146050061:146050366:+	0	+
#Deleted in new
chr7	146915846	146915906	ENSG00000174469.19|CNTNAP2|pc|chr7:146915846:146915906:+	0	+
#Deleted in new
chr7	147080933	147082088	ENSG00000236795.1|AC006004.1|lncRNA|chr7:147080933:147082088:-	0	-
#Deleted in new
chr7	147082539	147083221	ENSG00000236795.1|AC006004.1|lncRNA|chr7:147082539:147083221:-	0	-
#Deleted in new
chr7	147097431	147097609	ENSG00000236795.1|AC006004.1|lncRNA|chr7:147097431:147097609:-	0	-
#Deleted in new
chr7	148010	148618	ENSG00000242474.2|AC093627.5|lncRNA|chr7:148010:148618:-	0	-
#Deleted in new
chr7	148044591	148044703	ENSG00000174469.19|CNTNAP2|pc|chr7:148044591:148044703:+	0	+
#Deleted in new
chr7	148056472	148056673	ENSG00000174469.19|CNTNAP2|pc|chr7:148056472:148056673:+	0	+
#Deleted in new
chr7	14815163	14815240	ENSG00000226323.1|AC006150.1|lncRNA|chr7:14815163:14815240:+	0	+
#Deleted in new
chr7	148189880	148190854	ENSG00000174469.19|CNTNAP2|pc|chr7:148189880:148190854:+	0	+
#Partially deleted in new
chr7	1482277	1483853	ENSG00000164880.15|INTS1|pc|chr7:1482277:1483853:-	0	-
#Deleted in new
chr7	148231	148714	ENSG00000242474.2|AC093627.5|lncRNA|chr7:148231:148714:-	0	-
#Deleted in new
chr7	148381392	148381592	ENSG00000174469.19|CNTNAP2|pc|chr7:148381392:148381592:+	0	+
#Deleted in new
chr7	148414747	148414901	ENSG00000174469.19|CNTNAP2|pc|chr7:148414747:148414901:+	0	+
#Deleted in new
chr7	148473598	148474748	ENSG00000283504.1|AC006974.1|lncRNA|chr7:148473598:148474748:-	0	-
#Deleted in new
chr7	148477362	148477515	ENSG00000283504.1|AC006974.1|lncRNA|chr7:148477362:148477515:-	0	-
#Deleted in new
chr7	148503260	148503458	ENSG00000283504.1|AC006974.1|lncRNA|chr7:148503260:148503458:-	0	-
#Deleted in new
chr7	148531	148618	ENSG00000242474.2|AC093627.5|lncRNA|chr7:148531:148618:-	0	-
#Deleted in new
chr7	148543676	148544480	ENSG00000283648.1|AC006974.2|lncRNA|chr7:148543676:148544480:-	0	-
#Deleted in new
chr7	148562264	148562310	ENSG00000283648.1|AC006974.2|lncRNA|chr7:148562264:148562310:-	0	-
#Partially deleted in new
chr7	148568099	148568278	ENSG00000283648.1|AC006974.2|lncRNA|chr7:148568099:148568278:-	0	-
#Deleted in new
chr7	148572123	148572177	ENSG00000283648.1|AC006974.2|lncRNA|chr7:148572123:148572177:-	0	-
#Deleted in new
chr7	148614041	148614296	ENSG00000170279.2|C7orf33|pc|chr7:148614041:148614296:+	0	+
#Deleted in new
chr7	148615326	148615860	ENSG00000170279.2|C7orf33|pc|chr7:148615326:148615860:+	0	+
#Deleted in new
chr7	148987526	148989432	ENSG00000281189.1|GHET1|lncRNA|chr7:148987526:148989432:+	0	+
#Partially deleted in new
chr7	149105272	149105566	ENSG00000204947.8|ZNF425|pc|chr7:149105272:149105566:-	0	-
#Deleted in new
chr7	149105488	149105566	ENSG00000204947.8|ZNF425|pc|chr7:149105488:149105566:-	0	-
#Deleted in new
chr7	149112017	149112373	ENSG00000204947.8|ZNF425|pc|chr7:149112017:149112373:-	0	-
#Deleted in new
chr7	149112136	149112295	ENSG00000204947.8|ZNF425|pc|chr7:149112136:149112295:-	0	-
#Deleted in new
chr7	149112136	149112396	ENSG00000204947.8|ZNF425|pc|chr7:149112136:149112396:-	0	-
#Deleted in new
chr7	149113273	149113454	ENSG00000204947.8|ZNF425|pc|chr7:149113273:149113454:-	0	-
#Deleted in new
chr7	149126129	149126306	ENSG00000204947.8|ZNF425|pc|chr7:149126129:149126306:-	0	-
#Deleted in new
chr7	149126195	149126346	ENSG00000204947.8|ZNF425|pc|chr7:149126195:149126346:-	0	-
#Deleted in new
chr7	149126415	149126655	ENSG00000197024.8|ZNF398|pc|chr7:149126415:149126655:+	0	+
#Deleted in new
chr7	149128822	149128944	ENSG00000197024.8|ZNF398|pc|chr7:149128822:149128944:+	0	+
#Deleted in new
chr7	149147107	149147242	ENSG00000197024.8|ZNF398|pc|chr7:149147107:149147242:+	0	+
#Deleted in new
chr7	149251209	149251327	ENSG00000170260.8|ZNF212|pc|chr7:149251209:149251327:+	0	+
#Deleted in new
chr7	149251279	149251327	ENSG00000170260.8|ZNF212|pc|chr7:149251279:149251327:+	0	+
#Deleted in new
chr7	149262170	149262357	ENSG00000204946.9|ZNF783|pc|chr7:149262170:149262357:+	0	+
#Deleted in new
chr7	149262214	149262357	ENSG00000204946.9|ZNF783|pc|chr7:149262214:149262357:+	0	+
#Partially deleted in new
chr7	149278131	149278248	ENSG00000204946.9|ZNF783|pc|chr7:149278131:149278248:+	0	+
#Partially deleted in new
chr7	149278137	149278248	ENSG00000204946.9|ZNF783|pc|chr7:149278137:149278248:+	0	+
#Deleted in new
chr7	149289937	149290038	ENSG00000204946.9|ZNF783|pc|chr7:149289937:149290038:+	0	+
#Deleted in new
chr7	149289937	149290083	ENSG00000204946.9|ZNF783|pc|chr7:149289937:149290083:+	0	+
#Deleted in new
chr7	149291555	149291745	ENSG00000204946.9|ZNF783|pc|chr7:149291555:149291745:+	0	+
#Deleted in new
chr7	149292210	149292308	ENSG00000204946.9|ZNF783|pc|chr7:149292210:149292308:+	0	+
#Deleted in new
chr7	149328	149362	ENSG00000242474.2|AC093627.5|lncRNA|chr7:149328:149362:-	0	-
#Deleted in new
chr7	149328	149438	ENSG00000242474.2|AC093627.5|lncRNA|chr7:149328:149438:-	0	-
#Deleted in new
chr7	149328	149466	ENSG00000242474.2|AC093627.5|lncRNA|chr7:149328:149466:-	0	-
#Deleted in new
chr7	149398203	149398543	ENSG00000228151.1|AC004941.1|lncRNA|chr7:149398203:149398543:+	0	+
#Partially deleted in new
chr7	149398676	149401456	ENSG00000228151.1|AC004941.1|lncRNA|chr7:149398676:149401456:+	0	+
#Deleted in new
chr7	149487619	149491953	ENSG00000181220.15|ZNF746|pc|chr7:149487619:149491953:-	0	-
#Partially deleted in new
chr7	149596	152547	ENSG00000240859.1|AC093627.4|lncRNA|chr7:149596:152547:+	0	+
#Deleted in new
chr7	149730	150132	ENSG00000240859.1|AC093627.4|lncRNA|chr7:149730:150132:+	0	+
#Deleted in new
chr7	149777	150132	ENSG00000240859.1|AC093627.4|lncRNA|chr7:149777:150132:+	0	+
#Deleted in new
chr7	149851571	149852170	ENSG00000280149.1|AC004877.2|lncRNA|chr7:149851571:149852170:+	0	+
#Partially deleted in new
chr7	149855973	149856361	ENSG00000106479.10|ZNF862|pc|chr7:149855973:149856361:+	0	+
#Deleted in new
chr7	149870241	149870351	ENSG00000204934.10|ATP6V0E2-AS1|lncRNA|chr7:149870241:149870351:-	0	-
#Deleted in new
chr7	149870297	149870351	ENSG00000204934.10|ATP6V0E2-AS1|lncRNA|chr7:149870297:149870351:-	0	-
#Deleted in new
chr7	149871641	149871796	ENSG00000204934.10|ATP6V0E2-AS1|lncRNA|chr7:149871641:149871796:-	0	-
#Partially deleted in new
chr7	149872967	149874169	ENSG00000171130.17|ATP6V0E2|pc|chr7:149872967:149874169:+	0	+
#Deleted in new
chr7	149873223	149873842	ENSG00000204934.10|ATP6V0E2-AS1|lncRNA|chr7:149873223:149873842:-	0	-
#Partially deleted in new
chr7	149873223	149873845	ENSG00000204934.10|ATP6V0E2-AS1|lncRNA|chr7:149873223:149873845:-	0	-
#Deleted in new
chr7	149875972	149876089	ENSG00000171130.17|ATP6V0E2|pc|chr7:149875972:149876089:+	0	+
#Deleted in new
chr7	149881358	149881580	ENSG00000273293.1|AC093458.1|lncRNA|chr7:149881358:149881580:-	0	-
#Partially deleted in new
chr7	149881476	149882105	ENSG00000279536.1|AC093458.2|lncRNA|chr7:149881476:149882105:+	0	+
#Partially deleted in new
chr7	150000751	150003078	ENSG00000260555.1|AC092681.2|lncRNA|chr7:150000751:150003078:+	0	+
#Deleted in new
chr7	150004407	150005124	ENSG00000260555.1|AC092681.2|lncRNA|chr7:150004407:150005124:+	0	+
#Deleted in new
chr7	150040520	150040654	ENSG00000241449.5|AC092666.1|lncRNA|chr7:150040520:150040654:+	0	+
#Deleted in new
chr7	150041362	150041461	ENSG00000241449.5|AC092666.1|lncRNA|chr7:150041362:150041461:+	0	+
#Deleted in new
chr7	150044749	150045092	ENSG00000241449.5|AC092666.1|lncRNA|chr7:150044749:150045092:+	0	+
#Deleted in new
chr7	150062088	150062259	ENSG00000241449.5|AC092666.1|lncRNA|chr7:150062088:150062259:+	0	+
#Deleted in new
chr7	1500891	1501279	ENSG00000164880.15|INTS1|pc|chr7:1500891:1501279:-	0	-
#Partially deleted in new
chr7	150243915	150249054	ENSG00000106526.10|ACTR3C|pc|chr7:150243915:150249054:-	0	-
#Partially deleted in new
chr7	150243918	150249060	ENSG00000106526.10|ACTR3C|pc|chr7:150243918:150249060:-	0	-
#Deleted in new
chr7	150247212	150247569	ENSG00000106526.10|ACTR3C|pc|chr7:150247212:150247569:-	0	-
#Deleted in new
chr7	150248947	150249054	ENSG00000106526.10|ACTR3C|pc|chr7:150248947:150249054:-	0	-
#Deleted in new
chr7	150302841	150302980	ENSG00000106526.10|ACTR3C|pc|chr7:150302841:150302980:-	0	-
#Deleted in new
chr7	150322638	150323212	ENSG00000127399.14|LRRC61|pc|chr7:150322638:150323212:+	0	+
#Deleted in new
chr7	150322865	150323163	ENSG00000106526.10|ACTR3C|pc|chr7:150322865:150323163:-	0	-
#Deleted in new
chr7	150323215	150323560	ENSG00000127399.14|LRRC61|pc|chr7:150323215:150323560:+	0	+
#Deleted in new
chr7	150323262	150323560	ENSG00000127399.14|LRRC61|pc|chr7:150323262:150323560:+	0	+
#Deleted in new
chr7	150323286	150323560	ENSG00000127399.14|LRRC61|pc|chr7:150323286:150323560:+	0	+
#Deleted in new
chr7	150323290	150323560	ENSG00000127399.14|LRRC61|pc|chr7:150323290:150323560:+	0	+
#Deleted in new
chr7	150323468	150323573	ENSG00000106526.10|ACTR3C|pc|chr7:150323468:150323573:-	0	-
#Deleted in new
chr7	150323468	150323725	ENSG00000106526.10|ACTR3C|pc|chr7:150323468:150323725:-	0	-
#Deleted in new
chr7	150324357	150324418	ENSG00000127399.14|LRRC61|pc|chr7:150324357:150324418:+	0	+
#Deleted in new
chr7	150325840	150325919	ENSG00000127399.14|LRRC61|pc|chr7:150325840:150325919:+	0	+
#Deleted in new
chr7	150325840	150326010	ENSG00000127399.14|LRRC61|pc|chr7:150325840:150326010:+	0	+
#Partially deleted in new
chr7	150329788	150332721	ENSG00000188707.5|ZBED6CL|pc|chr7:150329788:150332721:+	0	+
#Deleted in new
chr7	150363776	150364177	ENSG00000240449.1|AC005586.1|lncRNA|chr7:150363776:150364177:-	0	-
#Deleted in new
chr7	150433653	150433829	ENSG00000242258.1|LINC00996|lncRNA|chr7:150433653:150433829:+	0	+
#Deleted in new
chr7	150433729	150433829	ENSG00000242258.1|LINC00996|lncRNA|chr7:150433729:150433829:+	0	+
#Deleted in new
chr7	150435029	150435157	ENSG00000242258.1|LINC00996|lncRNA|chr7:150435029:150435157:+	0	+
#Deleted in new
chr7	150442548	150442892	ENSG00000242258.1|LINC00996|lncRNA|chr7:150442548:150442892:+	0	+
#Deleted in new
chr7	150442548	150443160	ENSG00000242258.1|LINC00996|lncRNA|chr7:150442548:150443160:+	0	+
#Deleted in new
chr7	150446699	150446889	ENSG00000242258.1|LINC00996|lncRNA|chr7:150446699:150446889:+	0	+
#Deleted in new
chr7	150447075	150448140	ENSG00000242258.1|LINC00996|lncRNA|chr7:150447075:150448140:+	0	+
#Deleted in new
chr7	15068304	15068651	ENSG00000227489.1|AC006458.1|lncRNA|chr7:15068304:15068651:+	0	+
#Deleted in new
chr7	150685696	150685785	ENSG00000106560.10|GIMAP2|pc|chr7:150685696:150685785:+	0	+
#Deleted in new
chr7	150685699	150685785	ENSG00000106560.10|GIMAP2|pc|chr7:150685699:150685785:+	0	+
#Deleted in new
chr7	150685726	150685785	ENSG00000106560.10|GIMAP2|pc|chr7:150685726:150685785:+	0	+
#Deleted in new
chr7	150687051	150687087	ENSG00000106560.10|GIMAP2|pc|chr7:150687051:150687087:+	0	+
#Deleted in new
chr7	150687051	150687518	ENSG00000106560.10|GIMAP2|pc|chr7:150687051:150687518:+	0	+
#Deleted in new
chr7	150689488	150689702	ENSG00000106560.10|GIMAP2|pc|chr7:150689488:150689702:+	0	+
#Partially deleted in new
chr7	150720047	150724284	ENSG00000213203.2|GIMAP1|pc|chr7:150720047:150724284:+	0	+
#Deleted in new
chr7	150722252	150722370	ENSG00000196329.11|GIMAP5|pc|chr7:150722252:150722370:+	0	+
#Deleted in new
chr7	150737347	150737708	ENSG00000196329.11|GIMAP5|pc|chr7:150737347:150737708:+	0	+
#Deleted in new
chr7	150737504	150737708	ENSG00000196329.11|GIMAP5|pc|chr7:150737504:150737708:+	0	+
#Deleted in new
chr7	150737504	150737708	ENSG00000281887.3|GIMAP1-GIMAP5|pc|chr7:150737504:150737708:+	0	+
#Deleted in new
chr7	150737608	150737708	ENSG00000196329.11|GIMAP5|pc|chr7:150737608:150737708:+	0	+
#Deleted in new
chr7	150737626	150737708	ENSG00000196329.11|GIMAP5|pc|chr7:150737626:150737708:+	0	+
#Deleted in new
chr7	150737651	150737708	ENSG00000196329.11|GIMAP5|pc|chr7:150737651:150737708:+	0	+
#Partially deleted in new
chr7	150824626	150824963	ENSG00000002726.20|AOC1|pc|chr7:150824626:150824963:+	0	+
#Deleted in new
chr7	150827247	150827402	ENSG00000002726.20|AOC1|pc|chr7:150827247:150827402:+	0	+
#Deleted in new
chr7	150853917	150854163	ENSG00000002726.20|AOC1|pc|chr7:150853917:150854163:+	0	+
#Deleted in new
chr7	150859808	150859947	ENSG00000002726.20|AOC1|pc|chr7:150859808:150859947:+	0	+
#Deleted in new
chr7	1508654	1508773	ENSG00000231927.1|AC093734.1|lncRNA|chr7:1508654:1508773:-	0	-
#Deleted in new
chr7	1509304	1509427	ENSG00000231927.1|AC093734.1|lncRNA|chr7:1509304:1509427:-	0	-
#Deleted in new
chr7	150990994	150991300	ENSG00000164867.10|NOS3|pc|chr7:150990994:150991300:+	0	+
#Deleted in new
chr7	150991103	150991300	ENSG00000164867.10|NOS3|pc|chr7:150991103:150991300:+	0	+
#Deleted in new
chr7	151002835	151002963	ENSG00000164867.10|NOS3|pc|chr7:151002835:151002963:+	0	+
#Deleted in new
chr7	151003150	151003935	ENSG00000164867.10|NOS3|pc|chr7:151003150:151003935:+	0	+
#Deleted in new
chr7	151003310	151003935	ENSG00000164867.10|NOS3|pc|chr7:151003310:151003935:+	0	+
#Deleted in new
chr7	151011787	151012065	ENSG00000164867.10|NOS3|pc|chr7:151011787:151012065:+	0	+
#Deleted in new
chr7	151029588	151029754	ENSG00000243433.1|AC010973.1|lncRNA|chr7:151029588:151029754:-	0	-
#Deleted in new
chr7	151031240	151031291	ENSG00000197150.12|ABCB8|pc|chr7:151031240:151031291:+	0	+
#Deleted in new
chr7	151031240	151031626	ENSG00000197150.12|ABCB8|pc|chr7:151031240:151031626:+	0	+
#Partially deleted in new
chr7	151032843	151033034	ENSG00000197150.12|ABCB8|pc|chr7:151032843:151033034:+	0	+
#Deleted in new
chr7	151037168	151037524	ENSG00000197150.12|ABCB8|pc|chr7:151037168:151037524:+	0	+
#Partially deleted in new
chr7	151037240	151037570	ENSG00000197150.12|ABCB8|pc|chr7:151037240:151037570:+	0	+
#Partially deleted in new
chr7	151037283	151037586	ENSG00000197150.12|ABCB8|pc|chr7:151037283:151037586:+	0	+
#Deleted in new
chr7	151112183	151112244	ENSG00000133612.18|AGAP3|pc|chr7:151112183:151112244:+	0	+
#Deleted in new
chr7	151361058	151361237	ENSG00000013374.15|NUB1|pc|chr7:151361058:151361237:+	0	+
#Deleted in new
chr7	151361058	151361249	ENSG00000013374.15|NUB1|pc|chr7:151361058:151361249:+	0	+
#Partially deleted in new
chr7	151408972	151409053	ENSG00000187260.15|WDR86|pc|chr7:151408972:151409053:-	0	-
#Deleted in new
chr7	151411669	151411792	ENSG00000243836.5|WDR86-AS1|lncRNA|chr7:151411669:151411792:+	0	+
#Deleted in new
chr7	151411669	151412101	ENSG00000243836.5|WDR86-AS1|lncRNA|chr7:151411669:151412101:+	0	+
#Deleted in new
chr7	151411966	151412007	ENSG00000243836.5|WDR86-AS1|lncRNA|chr7:151411966:151412007:+	0	+
#Deleted in new
chr7	151411966	151412070	ENSG00000243836.5|WDR86-AS1|lncRNA|chr7:151411966:151412070:+	0	+
#Deleted in new
chr7	151412718	151412852	ENSG00000243836.5|WDR86-AS1|lncRNA|chr7:151412718:151412852:+	0	+
#Deleted in new
chr7	151412718	151413048	ENSG00000243836.5|WDR86-AS1|lncRNA|chr7:151412718:151413048:+	0	+
#Deleted in new
chr7	151413271	151413354	ENSG00000243836.5|WDR86-AS1|lncRNA|chr7:151413271:151413354:+	0	+
#Deleted in new
chr7	151427682	151427952	ENSG00000241456.1|AC005996.2|lncRNA|chr7:151427682:151427952:+	0	+
#Partially deleted in new
chr7	151428834	151430180	ENSG00000127377.8|CRYGN|pc|chr7:151428834:151430180:-	0	-
#Deleted in new
chr7	151429718	151430180	ENSG00000127377.8|CRYGN|pc|chr7:151429718:151430180:-	0	-
#Deleted in new
chr7	151429969	151430180	ENSG00000127377.8|CRYGN|pc|chr7:151429969:151430180:-	0	-
#Deleted in new
chr7	151430000	151430180	ENSG00000127377.8|CRYGN|pc|chr7:151430000:151430180:-	0	-
#Partially deleted in new
chr7	151438830	151439124	ENSG00000241456.1|AC005996.2|lncRNA|chr7:151438830:151439124:+	0	+
#Partially deleted in new
chr7	151471548	151472067	ENSG00000106615.9|RHEB|pc|chr7:151471548:151472067:-	0	-
#Deleted in new
chr7	151734247	151734311	ENSG00000106617.13|PRKAG2|pc|chr7:151734247:151734311:-	0	-
#Deleted in new
chr7	151950385	151950913	ENSG00000227562.1|AC074257.1|lncRNA|chr7:151950385:151950913:-	0	-
#Deleted in new
chr7	151954928	151954985	ENSG00000227562.1|AC074257.1|lncRNA|chr7:151954928:151954985:-	0	-
#Deleted in new
chr7	151957782	151957886	ENSG00000106648.13|GALNTL5|pc|chr7:151957782:151957886:+	0	+
#Deleted in new
chr7	151960176	151960686	ENSG00000106648.13|GALNTL5|pc|chr7:151960176:151960686:+	0	+
#Deleted in new
chr7	151970614	151970701	ENSG00000106648.13|GALNTL5|pc|chr7:151970614:151970701:+	0	+
#Deleted in new
chr7	151985752	151986004	ENSG00000106648.13|GALNTL5|pc|chr7:151985752:151986004:+	0	+
#Deleted in new
chr7	151985905	151986004	ENSG00000106648.13|GALNTL5|pc|chr7:151985905:151986004:+	0	+
#Deleted in new
chr7	151994938	151995341	ENSG00000106648.13|GALNTL5|pc|chr7:151994938:151995341:+	0	+
#Deleted in new
chr7	152027596	152027718	ENSG00000178234.12|GALNT11|pc|chr7:152027596:152027718:+	0	+
#Deleted in new
chr7	152074297	152074403	ENSG00000178234.12|GALNT11|pc|chr7:152074297:152074403:+	0	+
#Deleted in new
chr7	152074985	152075180	ENSG00000178234.12|GALNT11|pc|chr7:152074985:152075180:+	0	+
#Deleted in new
chr7	152075009	152075180	ENSG00000178234.12|GALNT11|pc|chr7:152075009:152075180:+	0	+
#Deleted in new
chr7	152079274	152079408	ENSG00000178234.12|GALNT11|pc|chr7:152079274:152079408:+	0	+
#Deleted in new
chr7	152079286	152079408	ENSG00000178234.12|GALNT11|pc|chr7:152079286:152079408:+	0	+
#Deleted in new
chr7	152116903	152117038	ENSG00000178234.12|GALNT11|pc|chr7:152116903:152117038:+	0	+
#Deleted in new
chr7	152120000	152120519	ENSG00000229591.1|AC006017.1|lncRNA|chr7:152120000:152120519:-	0	-
#Partially deleted in new
chr7	152644778	152649363	ENSG00000196584.2|XRCC2|pc|chr7:152644778:152649363:-	0	-
#Partially deleted in new
chr7	152646503	152649363	ENSG00000196584.2|XRCC2|pc|chr7:152646503:152649363:-	0	-
#Deleted in new
chr7	152663943	152664004	ENSG00000196584.2|XRCC2|pc|chr7:152663943:152664004:-	0	-
#Partially deleted in new
chr7	152810741	152814645	ENSG00000133627.17|ACTR3B|pc|chr7:152810741:152814645:+	0	+
#Deleted in new
chr7	152811696	152811733	ENSG00000133627.17|ACTR3B|pc|chr7:152811696:152811733:+	0	+
#Deleted in new
chr7	153399919	153400546	ENSG00000234722.3|LINC01287|lncRNA|chr7:153399919:153400546:-	0	-
#Deleted in new
chr7	153405491	153405598	ENSG00000234722.3|LINC01287|lncRNA|chr7:153405491:153405598:-	0	-
#Deleted in new
chr7	153405492	153405598	ENSG00000234722.3|LINC01287|lncRNA|chr7:153405492:153405598:-	0	-
#Deleted in new
chr7	153406955	153407084	ENSG00000234722.3|LINC01287|lncRNA|chr7:153406955:153407084:-	0	-
#Deleted in new
chr7	153408	153490	ENSG00000240859.1|AC093627.4|lncRNA|chr7:153408:153490:+	0	+
#Deleted in new
chr7	153408	153938	ENSG00000240859.1|AC093627.4|lncRNA|chr7:153408:153938:+	0	+
#Deleted in new
chr7	153408	155465	ENSG00000240859.1|AC093627.4|lncRNA|chr7:153408:155465:+	0	+
#Deleted in new
chr7	153411	153823	ENSG00000240859.1|AC093627.4|lncRNA|chr7:153411:153823:+	0	+
#Deleted in new
chr7	153411233	153411475	ENSG00000234722.3|LINC01287|lncRNA|chr7:153411233:153411475:-	0	-
#Deleted in new
chr7	153411581	153413963	ENSG00000234722.3|LINC01287|lncRNA|chr7:153411581:153413963:-	0	-
#Deleted in new
chr7	153412090	153412234	ENSG00000234722.3|LINC01287|lncRNA|chr7:153412090:153412234:-	0	-
#Deleted in new
chr7	153413612	153413936	ENSG00000234722.3|LINC01287|lncRNA|chr7:153413612:153413936:-	0	-
#Deleted in new
chr7	15396045	15396594	ENSG00000187546.13|AGMO|pc|chr7:15396045:15396594:-	0	-
#Deleted in new
chr7	154038433	154038604	ENSG00000270114.1|AC006019.3|lncRNA|chr7:154038433:154038604:-	0	-
#Deleted in new
chr7	154055584	154055925	ENSG00000203335.4|AC006019.1|lncRNA|chr7:154055584:154055925:-	0	-
#Deleted in new
chr7	154057432	154059561	ENSG00000203335.4|AC006019.1|lncRNA|chr7:154057432:154059561:-	0	-
#Deleted in new
chr7	154092200	154092917	ENSG00000233363.1|AC006019.2|lncRNA|chr7:154092200:154092917:-	0	-
#Partially deleted in new
chr7	154093716	154096043	ENSG00000233363.1|AC006019.2|lncRNA|chr7:154093716:154096043:-	0	-
#Deleted in new
chr7	1543813	1544481	ENSG00000164855.15|TMEM184A|pc|chr7:1543813:1544481:-	0	-
#Deleted in new
chr7	1543829	1544057	ENSG00000164855.15|TMEM184A|pc|chr7:1543829:1544057:-	0	-
#Partially deleted in new
chr7	1544693	1546249	ENSG00000164855.15|TMEM184A|pc|chr7:1544693:1546249:-	0	-
#Deleted in new
chr7	1545598	1545779	ENSG00000164855.15|TMEM184A|pc|chr7:1545598:1545779:-	0	-
#Deleted in new
chr7	154587165	154587401	ENSG00000130226.16|DPP6|pc|chr7:154587165:154587401:+	0	+
#Deleted in new
chr7	154838387	154838877	ENSG00000236408.1|AC073336.1|lncRNA|chr7:154838387:154838877:-	0	-
#Deleted in new
chr7	154858226	154858502	ENSG00000130226.16|DPP6|pc|chr7:154858226:154858502:+	0	+
#Deleted in new
chr7	154876856	154877143	ENSG00000130226.16|DPP6|pc|chr7:154876856:154877143:+	0	+
#Duplicated in new
chr7	154883567	154885744	ENSG00000130226.16|DPP6|pc|chr7:154883567:154885744:+	0	+
#Deleted in new
chr7	154928497	154928767	ENSG00000214106.7|PAXIP1-AS2|lncRNA|chr7:154928497:154928767:+	0	+
#Deleted in new
chr7	154928516	154928767	ENSG00000214106.7|PAXIP1-AS2|lncRNA|chr7:154928516:154928767:+	0	+
#Deleted in new
chr7	154928527	154928767	ENSG00000214106.7|PAXIP1-AS2|lncRNA|chr7:154928527:154928767:+	0	+
#Deleted in new
chr7	154928955	154929024	ENSG00000214106.7|PAXIP1-AS2|lncRNA|chr7:154928955:154929024:+	0	+
#Partially deleted in new
chr7	154944026	154945398	ENSG00000214106.7|PAXIP1-AS2|lncRNA|chr7:154944026:154945398:+	0	+
#Deleted in new
chr7	154947692	154947773	ENSG00000214106.7|PAXIP1-AS2|lncRNA|chr7:154947692:154947773:+	0	+
#Partially deleted in new
chr7	1549477	1549945	ENSG00000164855.15|TMEM184A|pc|chr7:1549477:1549945:-	0	-
#Deleted in new
chr7	154949297	154949908	ENSG00000214106.7|PAXIP1-AS2|lncRNA|chr7:154949297:154949908:+	0	+
#Deleted in new
chr7	154951225	154952188	ENSG00000272760.1|AC093726.1|lncRNA|chr7:154951225:154952188:+	0	+
#Deleted in new
chr7	1549546	1549604	ENSG00000164855.15|TMEM184A|pc|chr7:1549546:1549604:-	0	-
#Deleted in new
chr7	154956428	154957107	ENSG00000273183.1|AC093726.2|lncRNA|chr7:154956428:154957107:+	0	+
#Partially deleted in new
chr7	154963670	154965710	ENSG00000157212.18|PAXIP1|pc|chr7:154963670:154965710:-	0	-
#Deleted in new
chr7	154974153	154974623	ENSG00000157212.18|PAXIP1|pc|chr7:154974153:154974623:-	0	-
#Partially deleted in new
chr7	155003447	155005703	ENSG00000273344.1|PAXIP1-AS1|lncRNA|chr7:155003447:155005703:+	0	+
#Deleted in new
chr7	155067066	155069245	ENSG00000220575.7|HTR5A-AS1|lncRNA|chr7:155067066:155069245:-	0	-
#Deleted in new
chr7	155077137	155077234	ENSG00000157219.3|HTR5A|pc|chr7:155077137:155077234:+	0	+
#Deleted in new
chr7	155196562	155196987	ENSG00000217825.2|AC099552.1|lncRNA|chr7:155196562:155196987:-	0	-
#Deleted in new
chr7	155196686	155196987	ENSG00000217825.2|AC099552.1|lncRNA|chr7:155196686:155196987:-	0	-
#Deleted in new
chr7	155197261	155197374	ENSG00000217825.2|AC099552.1|lncRNA|chr7:155197261:155197374:-	0	-
#Deleted in new
chr7	155197261	155197393	ENSG00000217825.2|AC099552.1|lncRNA|chr7:155197261:155197393:-	0	-
#Deleted in new
chr7	155198268	155198436	ENSG00000217825.2|AC099552.1|lncRNA|chr7:155198268:155198436:-	0	-
#Deleted in new
chr7	155198268	155198455	ENSG00000217825.2|AC099552.1|lncRNA|chr7:155198268:155198455:-	0	-
#Deleted in new
chr7	155204146	155204363	ENSG00000228521.2|AC099552.3|lncRNA|chr7:155204146:155204363:+	0	+
#Deleted in new
chr7	155205039	155205189	ENSG00000228521.2|AC099552.3|lncRNA|chr7:155205039:155205189:+	0	+
#Partially deleted in new
chr7	155222902	155223851	ENSG00000278998.1|AC099552.4|lncRNA|chr7:155222902:155223851:+	0	+
#Deleted in new
chr7	155267298	155267360	ENSG00000225612.1|AC099552.2|lncRNA|chr7:155267298:155267360:+	0	+
#Deleted in new
chr7	155267527	155267789	ENSG00000225612.1|AC099552.2|lncRNA|chr7:155267527:155267789:+	0	+
#Deleted in new
chr7	155267920	155268052	ENSG00000225612.1|AC099552.2|lncRNA|chr7:155267920:155268052:+	0	+
#Deleted in new
chr7	155356984	155358780	ENSG00000204960.6|BLACE|pc|chr7:155356984:155358780:-	0	-
#Deleted in new
chr7	155357639	155358179	ENSG00000204960.6|BLACE|pc|chr7:155357639:155358179:-	0	-
#Deleted in new
chr7	155359899	155360043	ENSG00000204960.6|BLACE|pc|chr7:155359899:155360043:-	0	-
#Deleted in new
chr7	155360927	155361084	ENSG00000204960.6|BLACE|pc|chr7:155360927:155361084:-	0	-
#Deleted in new
chr7	155362811	155362950	ENSG00000204960.6|BLACE|pc|chr7:155362811:155362950:-	0	-
#Deleted in new
chr7	155363103	155363197	ENSG00000204960.6|BLACE|pc|chr7:155363103:155363197:-	0	-
#Deleted in new
chr7	155367808	155367934	ENSG00000204960.6|BLACE|pc|chr7:155367808:155367934:-	0	-
#Deleted in new
chr7	155382075	155382315	ENSG00000218672.1|AC008060.1|lncRNA|chr7:155382075:155382315:+	0	+
#Deleted in new
chr7	155395045	155396356	ENSG00000218672.1|AC008060.1|lncRNA|chr7:155395045:155396356:+	0	+
#Deleted in new
chr7	155474205	155474300	ENSG00000146910.12|CNPY1|pc|chr7:155474205:155474300:-	0	-
#Deleted in new
chr7	155474255	155474300	ENSG00000283128.1|AC009403.2|lncRNA|chr7:155474255:155474300:-	0	-
#Deleted in new
chr7	155481879	155481987	ENSG00000283128.1|AC009403.2|lncRNA|chr7:155481879:155481987:-	0	-
#Deleted in new
chr7	155518352	155518623	ENSG00000227365.1|AC008060.2|lncRNA|chr7:155518352:155518623:+	0	+
#Deleted in new
chr7	155546428	155546559	ENSG00000146910.12|CNPY1|pc|chr7:155546428:155546559:-	0	-
#Partially deleted in new
chr7	155576549	155576833	ENSG00000283128.1|AC009403.2|lncRNA|chr7:155576549:155576833:-	0	-
#Deleted in new
chr7	155585516	155585546	ENSG00000283128.1|AC009403.2|lncRNA|chr7:155585516:155585546:-	0	-
#Deleted in new
chr7	155611230	155611417	ENSG00000216895.9|AC009403.1|lncRNA|chr7:155611230:155611417:-	0	-
#Partially deleted in new
chr7	155643083	155643604	ENSG00000216895.9|AC009403.1|lncRNA|chr7:155643083:155643604:-	0	-
#Deleted in new
chr7	155643200	155643604	ENSG00000216895.9|AC009403.1|lncRNA|chr7:155643200:155643604:-	0	-
#Deleted in new
chr7	155643467	155643604	ENSG00000216895.9|AC009403.1|lncRNA|chr7:155643467:155643604:-	0	-
#Deleted in new
chr7	155643467	155643604	ENSG00000283128.1|AC009403.2|lncRNA|chr7:155643467:155643604:-	0	-
#Deleted in new
chr7	155643940	155644186	ENSG00000283128.1|AC009403.2|lncRNA|chr7:155643940:155644186:-	0	-
#Partially deleted in new
chr7	155644213	155644377	ENSG00000216895.9|AC009403.1|lncRNA|chr7:155644213:155644377:-	0	-
#Partially deleted in new
chr7	155644213	155644396	ENSG00000283128.1|AC009403.2|lncRNA|chr7:155644213:155644396:-	0	-
#Deleted in new
chr7	155746418	155746665	ENSG00000184863.10|RBM33|pc|chr7:155746418:155746665:+	0	+
#Deleted in new
chr7	155746585	155746665	ENSG00000184863.10|RBM33|pc|chr7:155746585:155746665:+	0	+
#Deleted in new
chr7	156432522	156432879	ENSG00000228569.1|AC073133.1|lncRNA|chr7:156432522:156432879:-	0	-
#Deleted in new
chr7	156435758	156435833	ENSG00000228569.1|AC073133.1|lncRNA|chr7:156435758:156435833:-	0	-
#Deleted in new
chr7	156441229	156441380	ENSG00000233878.1|AC073133.2|lncRNA|chr7:156441229:156441380:-	0	-
#Deleted in new
chr7	156444248	156445588	ENSG00000233878.1|AC073133.2|lncRNA|chr7:156444248:156445588:-	0	-
#Partially deleted in new
chr7	156472245	156472711	ENSG00000182648.11|LINC01006|lncRNA|chr7:156472245:156472711:-	0	-
#Deleted in new
chr7	156540490	156541103	ENSG00000279418.1|LINC00244|lncRNA|chr7:156540490:156541103:+	0	+
#Deleted in new
chr7	156584159	156584520	ENSG00000182648.11|LINC01006|lncRNA|chr7:156584159:156584520:-	0	-
#Deleted in new
chr7	156603617	156603911	ENSG00000182648.11|LINC01006|lncRNA|chr7:156603617:156603911:-	0	-
#Deleted in new
chr7	156603784	156603911	ENSG00000182648.11|LINC01006|lncRNA|chr7:156603784:156603911:-	0	-
#Deleted in new
chr7	156605131	156605380	ENSG00000182648.11|LINC01006|lncRNA|chr7:156605131:156605380:-	0	-
#Deleted in new
chr7	156605187	156605380	ENSG00000182648.11|LINC01006|lncRNA|chr7:156605187:156605380:-	0	-
#Deleted in new
chr7	156605657	156605744	ENSG00000182648.11|LINC01006|lncRNA|chr7:156605657:156605744:-	0	-
#Deleted in new
chr7	156605657	156605764	ENSG00000182648.11|LINC01006|lncRNA|chr7:156605657:156605764:-	0	-
#Deleted in new
chr7	156639431	156639948	ENSG00000182648.11|LINC01006|lncRNA|chr7:156639431:156639948:-	0	-
#Deleted in new
chr7	156640003	156640654	ENSG00000182648.11|LINC01006|lncRNA|chr7:156640003:156640654:-	0	-
#Deleted in new
chr7	156640280	156640333	ENSG00000105982.16|RNF32|pc|chr7:156640280:156640333:+	0	+
#Deleted in new
chr7	156640535	156640563	ENSG00000182648.11|LINC01006|lncRNA|chr7:156640535:156640563:-	0	-
#Deleted in new
chr7	156640535	156640581	ENSG00000182648.11|LINC01006|lncRNA|chr7:156640535:156640581:-	0	-
#Deleted in new
chr7	156640535	156640592	ENSG00000182648.11|LINC01006|lncRNA|chr7:156640535:156640592:-	0	-
#Deleted in new
chr7	156640673	156640737	ENSG00000105982.16|RNF32|pc|chr7:156640673:156640737:+	0	+
#Deleted in new
chr7	156640746	156641004	ENSG00000105982.16|RNF32|pc|chr7:156640746:156641004:+	0	+
#Deleted in new
chr7	156640748	156640955	ENSG00000105982.16|RNF32|pc|chr7:156640748:156640955:+	0	+
#Deleted in new
chr7	156640770	156640811	ENSG00000105982.16|RNF32|pc|chr7:156640770:156640811:+	0	+
#Deleted in new
chr7	156640783	156641004	ENSG00000105982.16|RNF32|pc|chr7:156640783:156641004:+	0	+
#Deleted in new
chr7	156640878	156640955	ENSG00000105982.16|RNF32|pc|chr7:156640878:156640955:+	0	+
#Deleted in new
chr7	156646453	156646560	ENSG00000105982.16|RNF32|pc|chr7:156646453:156646560:+	0	+
#Deleted in new
chr7	156654436	156654457	ENSG00000105982.16|RNF32|pc|chr7:156654436:156654457:+	0	+
#Deleted in new
chr7	156658862	156658991	ENSG00000105982.16|RNF32|pc|chr7:156658862:156658991:+	0	+
#Deleted in new
chr7	156658862	156658992	ENSG00000105982.16|RNF32|pc|chr7:156658862:156658992:+	0	+
#Deleted in new
chr7	156658862	156660350	ENSG00000105982.16|RNF32|pc|chr7:156658862:156660350:+	0	+
#Partially deleted in new
chr7	156668945	156669287	ENSG00000105983.20|LMBR1|pc|chr7:156668945:156669287:-	0	-
#Deleted in new
chr7	156677842	156678350	ENSG00000105983.20|LMBR1|pc|chr7:156677842:156678350:-	0	-
#Deleted in new
chr7	156679076	156679109	ENSG00000105983.20|LMBR1|pc|chr7:156679076:156679109:-	0	-
#Deleted in new
chr7	156679076	156679133	ENSG00000105983.20|LMBR1|pc|chr7:156679076:156679133:-	0	-
#Deleted in new
chr7	156679076	156679306	ENSG00000105983.20|LMBR1|pc|chr7:156679076:156679306:-	0	-
#Deleted in new
chr7	156680442	156680574	ENSG00000105983.20|LMBR1|pc|chr7:156680442:156680574:-	0	-
#Deleted in new
chr7	156736492	156736615	ENSG00000105983.20|LMBR1|pc|chr7:156736492:156736615:-	0	-
#Deleted in new
chr7	156779654	156779732	ENSG00000105983.20|LMBR1|pc|chr7:156779654:156779732:-	0	-
#Deleted in new
chr7	156834477	156834575	ENSG00000105983.20|LMBR1|pc|chr7:156834477:156834575:-	0	-
#Deleted in new
chr7	156834477	156834595	ENSG00000105983.20|LMBR1|pc|chr7:156834477:156834595:-	0	-
#Deleted in new
chr7	156834575	156834595	ENSG00000105983.20|LMBR1|pc|chr7:156834575:156834595:-	0	-
#Deleted in new
chr7	156892469	156892579	ENSG00000105983.20|LMBR1|pc|chr7:156892469:156892579:-	0	-
#Deleted in new
chr7	156892469	156892590	ENSG00000105983.20|LMBR1|pc|chr7:156892469:156892590:-	0	-
#Partially deleted in new
chr7	15690697	15690854	ENSG00000225974.1|AC005550.1|lncRNA|chr7:15690697:15690854:-	0	-
#Deleted in new
chr7	156944720	156944971	ENSG00000230033.1|AC006357.1|lncRNA|chr7:156944720:156944971:+	0	+
#Deleted in new
chr7	156945365	156945645	ENSG00000230033.1|AC006357.1|lncRNA|chr7:156945365:156945645:+	0	+
#Deleted in new
chr7	156958605	156958856	ENSG00000146909.7|NOM1|pc|chr7:156958605:156958856:+	0	+
#Partially deleted in new
chr7	156969528	156973182	ENSG00000146909.7|NOM1|pc|chr7:156969528:156973182:+	0	+
#Deleted in new
chr7	156994050	156994181	ENSG00000130675.14|MNX1|pc|chr7:156994050:156994181:-	0	-
#Deleted in new
chr7	1570008	1570045	ENSG00000157778.8|PSMG3|pc|chr7:1570008:1570045:-	0	-
#Deleted in new
chr7	1570072	1570279	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1570072:1570279:+	0	+
#Deleted in new
chr7	1570088	1570533	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1570088:1570533:+	0	+
#Deleted in new
chr7	1570134	1570279	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1570134:1570279:+	0	+
#Deleted in new
chr7	1570141	1570279	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1570141:1570279:+	0	+
#Deleted in new
chr7	1570145	1570279	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1570145:1570279:+	0	+
#Deleted in new
chr7	1570168	1570279	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1570168:1570279:+	0	+
#Deleted in new
chr7	1570233	1570279	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1570233:1570279:+	0	+
#Deleted in new
chr7	1570473	1571005	ENSG00000157778.8|PSMG3|pc|chr7:1570473:1571005:-	0	-
#Deleted in new
chr7	157109979	157111072	ENSG00000269446.2|AC006967.3|lncRNA|chr7:157109979:157111072:+	0	+
#Deleted in new
chr7	157281535	157281557	ENSG00000229660.1|AC004975.2|lncRNA|chr7:157281535:157281557:-	0	-
#Deleted in new
chr7	157282143	157282686	ENSG00000229660.1|AC004975.2|lncRNA|chr7:157282143:157282686:-	0	-
#Deleted in new
chr7	157335380	157335406	ENSG00000105993.14|DNAJB6|pc|chr7:157335380:157335406:+	0	+
#Deleted in new
chr7	157336361	157336773	ENSG00000105993.14|DNAJB6|pc|chr7:157336361:157336773:+	0	+
#Deleted in new
chr7	157368607	157368942	ENSG00000105993.14|DNAJB6|pc|chr7:157368607:157368942:+	0	+
#Deleted in new
chr7	157368736	157368795	ENSG00000105993.14|DNAJB6|pc|chr7:157368736:157368795:+	0	+
#Deleted in new
chr7	157368800	157368942	ENSG00000105993.14|DNAJB6|pc|chr7:157368800:157368942:+	0	+
#Deleted in new
chr7	157369130	157369251	ENSG00000105993.14|DNAJB6|pc|chr7:157369130:157369251:+	0	+
#Deleted in new
chr7	157369359	157369475	ENSG00000105993.14|DNAJB6|pc|chr7:157369359:157369475:+	0	+
#Partially deleted in new
chr7	157378124	157382377	ENSG00000105993.14|DNAJB6|pc|chr7:157378124:157382377:+	0	+
#Deleted in new
chr7	157381820	157381986	ENSG00000105993.14|DNAJB6|pc|chr7:157381820:157381986:+	0	+
#Partially deleted in new
chr7	157409794	157415529	ENSG00000105993.14|DNAJB6|pc|chr7:157409794:157415529:+	0	+
#Partially deleted in new
chr7	157466230	157468546	ENSG00000234210.1|AC006372.3|lncRNA|chr7:157466230:157468546:+	0	+
#Deleted in new
chr7	157470868	157471099	ENSG00000234210.1|AC006372.3|lncRNA|chr7:157470868:157471099:+	0	+
#Deleted in new
chr7	1574714	1574863	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1574714:1574863:+	0	+
#Deleted in new
chr7	157498329	157499716	ENSG00000234210.1|AC006372.3|lncRNA|chr7:157498329:157499716:+	0	+
#Deleted in new
chr7	157501321	157501515	ENSG00000223872.1|AC006372.1|lncRNA|chr7:157501321:157501515:+	0	+
#Deleted in new
chr7	157502983	157503109	ENSG00000223872.1|AC006372.1|lncRNA|chr7:157502983:157503109:+	0	+
#Deleted in new
chr7	157503351	157503577	ENSG00000223872.1|AC006372.1|lncRNA|chr7:157503351:157503577:+	0	+
#Deleted in new
chr7	157513293	157513337	ENSG00000233191.1|AC006372.2|lncRNA|chr7:157513293:157513337:+	0	+
#Deleted in new
chr7	157516277	157516479	ENSG00000233191.1|AC006372.2|lncRNA|chr7:157516277:157516479:+	0	+
#Deleted in new
chr7	157516795	157516841	ENSG00000233191.1|AC006372.2|lncRNA|chr7:157516795:157516841:+	0	+
#Deleted in new
chr7	1575786	1575888	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1575786:1575888:+	0	+
#Deleted in new
chr7	1575786	1576062	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1575786:1576062:+	0	+
#Deleted in new
chr7	157614022	157614101	ENSG00000222012.1|AC005481.1|lncRNA|chr7:157614022:157614101:+	0	+
#Deleted in new
chr7	157615388	157618765	ENSG00000222012.1|AC005481.1|lncRNA|chr7:157615388:157618765:+	0	+
#Deleted in new
chr7	157739009	157739451	ENSG00000231515.1|AC006003.1|lncRNA|chr7:157739009:157739451:-	0	-
#Deleted in new
chr7	157740285	157740456	ENSG00000231515.1|AC006003.1|lncRNA|chr7:157740285:157740456:-	0	-
#Deleted in new
chr7	157854528	157854875	ENSG00000233038.5|AC011899.2|lncRNA|chr7:157854528:157854875:+	0	+
#Deleted in new
chr7	157854584	157854875	ENSG00000233038.5|AC011899.2|lncRNA|chr7:157854584:157854875:+	0	+
#Deleted in new
chr7	157854607	157854875	ENSG00000233038.5|AC011899.2|lncRNA|chr7:157854607:157854875:+	0	+
#Deleted in new
chr7	157854799	157854875	ENSG00000233038.5|AC011899.2|lncRNA|chr7:157854799:157854875:+	0	+
#Deleted in new
chr7	157855926	157856130	ENSG00000233038.5|AC011899.2|lncRNA|chr7:157855926:157856130:+	0	+
#Deleted in new
chr7	157857289	157857548	ENSG00000233038.5|AC011899.2|lncRNA|chr7:157857289:157857548:+	0	+
#Deleted in new
chr7	157857289	157857582	ENSG00000233038.5|AC011899.2|lncRNA|chr7:157857289:157857582:+	0	+
#Deleted in new
chr7	157857289	157857852	ENSG00000233038.5|AC011899.2|lncRNA|chr7:157857289:157857852:+	0	+
#Deleted in new
chr7	158027372	158027476	ENSG00000231980.1|AC011899.1|lncRNA|chr7:158027372:158027476:+	0	+
#Deleted in new
chr7	158027632	158031128	ENSG00000231980.1|AC011899.1|lncRNA|chr7:158027632:158031128:+	0	+
#Deleted in new
chr7	1583161	1583231	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1583161:1583231:+	0	+
#Deleted in new
chr7	1583161	1583269	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1583161:1583269:+	0	+
#Deleted in new
chr7	1584383	1584418	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1584383:1584418:+	0	+
#Deleted in new
chr7	1584383	1584632	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1584383:1584632:+	0	+
#Deleted in new
chr7	1584383	1585617	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1584383:1585617:+	0	+
#Deleted in new
chr7	1584383	1586545	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1584383:1586545:+	0	+
#Deleted in new
chr7	1584383	1589626	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1584383:1589626:+	0	+
#Deleted in new
chr7	158539410	158539879	ENSG00000225365.1|AC078942.1|lncRNA|chr7:158539410:158539879:+	0	+
#Deleted in new
chr7	158639795	158641554	ENSG00000146918.19|NCAPG2|pc|chr7:158639795:158641554:-	0	-
#Deleted in new
chr7	158665314	158665386	ENSG00000146918.19|NCAPG2|pc|chr7:158665314:158665386:-	0	-
#Deleted in new
chr7	158667135	158667192	ENSG00000146918.19|NCAPG2|pc|chr7:158667135:158667192:-	0	-
#Deleted in new
chr7	158667135	158667238	ENSG00000146918.19|NCAPG2|pc|chr7:158667135:158667238:-	0	-
#Deleted in new
chr7	158668395	158668492	ENSG00000146918.19|NCAPG2|pc|chr7:158668395:158668492:-	0	-
#Deleted in new
chr7	158703649	158703702	ENSG00000146918.19|NCAPG2|pc|chr7:158703649:158703702:-	0	-
#Deleted in new
chr7	158703649	158703704	ENSG00000146918.19|NCAPG2|pc|chr7:158703649:158703704:-	0	-
#Partially deleted in new
chr7	158743528	158744217	ENSG00000117868.15|ESYT2|pc|chr7:158743528:158744217:-	0	-
#Deleted in new
chr7	1587820	1589621	ENSG00000230487.7|PSMG3-AS1|lncRNA|chr7:1587820:1589621:+	0	+
#Deleted in new
chr7	158829816	158830038	ENSG00000117868.15|ESYT2|pc|chr7:158829816:158830038:-	0	-
#Deleted in new
chr7	158829820	158830253	ENSG00000117868.15|ESYT2|pc|chr7:158829820:158830253:-	0	-
#Deleted in new
chr7	158856577	158856750	ENSG00000126870.15|WDR60|pc|chr7:158856577:158856750:+	0	+
#Deleted in new
chr7	158869445	158869490	ENSG00000126870.15|WDR60|pc|chr7:158869445:158869490:+	0	+
#Deleted in new
chr7	158884563	158884619	ENSG00000126870.15|WDR60|pc|chr7:158884563:158884619:+	0	+
#Deleted in new
chr7	158884573	158884619	ENSG00000126870.15|WDR60|pc|chr7:158884573:158884619:+	0	+
#Deleted in new
chr7	158887020	158887075	ENSG00000126870.15|WDR60|pc|chr7:158887020:158887075:+	0	+
#Deleted in new
chr7	158891264	158891333	ENSG00000126870.15|WDR60|pc|chr7:158891264:158891333:+	0	+
#Deleted in new
chr7	158956582	158956747	ENSG00000126870.15|WDR60|pc|chr7:158956582:158956747:+	0	+
#Deleted in new
chr7	159006521	159006827	ENSG00000231419.6|LINC00689|lncRNA|chr7:159006521:159006827:+	0	+
#Deleted in new
chr7	159008353	159009438	ENSG00000231419.6|LINC00689|lncRNA|chr7:159008353:159009438:+	0	+
#Deleted in new
chr7	159008420	159009438	ENSG00000231419.6|LINC00689|lncRNA|chr7:159008420:159009438:+	0	+
#Deleted in new
chr7	159008549	159008789	ENSG00000231419.6|LINC00689|lncRNA|chr7:159008549:159008789:+	0	+
#Deleted in new
chr7	159016457	159017646	ENSG00000231419.6|LINC00689|lncRNA|chr7:159016457:159017646:+	0	+
#Deleted in new
chr7	159017407	159017646	ENSG00000231419.6|LINC00689|lncRNA|chr7:159017407:159017646:+	0	+
#Deleted in new
chr7	159021672	159021797	ENSG00000231419.6|LINC00689|lncRNA|chr7:159021672:159021797:+	0	+
#Partially deleted in new
chr7	159021672	159022680	ENSG00000231419.6|LINC00689|lncRNA|chr7:159021672:159022680:+	0	+
#Partially deleted in new
chr7	159025166	159026238	ENSG00000231419.6|LINC00689|lncRNA|chr7:159025166:159026238:+	0	+
#Partially deleted in new
chr7	159096834	159097204	ENSG00000106018.13|VIPR2|pc|chr7:159096834:159097204:-	0	-
#Deleted in new
chr7	159116921	159117406	ENSG00000106018.13|VIPR2|pc|chr7:159116921:159117406:-	0	-
#Deleted in new
chr7	161764	164972	ENSG00000261795.1|AC093627.7|lncRNA|chr7:161764:164972:-	0	-
#Deleted in new
chr7	1620653	1620756	ENSG00000231476.1|AC074389.2|lncRNA|chr7:1620653:1620756:+	0	+
#Deleted in new
chr7	16210487	16210603	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16210487:16210603:+	0	+
#Deleted in new
chr7	16210506	16210603	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16210506:16210603:+	0	+
#Deleted in new
chr7	16210541	16210603	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16210541:16210603:+	0	+
#Deleted in new
chr7	16210543	16210603	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16210543:16210603:+	0	+
#Deleted in new
chr7	1621071	1621405	ENSG00000231476.1|AC074389.2|lncRNA|chr7:1621071:1621405:+	0	+
#Partially deleted in new
chr7	16216332	16216569	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16216332:16216569:+	0	+
#Partially deleted in new
chr7	16216383	16216569	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16216383:16216569:+	0	+
#Deleted in new
chr7	16237308	16237352	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16237308:16237352:+	0	+
#Deleted in new
chr7	16237308	16237406	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16237308:16237406:+	0	+
#Deleted in new
chr7	16237308	16237410	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16237308:16237410:+	0	+
#Deleted in new
chr7	16237308	16237413	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16237308:16237413:+	0	+
#Deleted in new
chr7	16247884	16248089	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16247884:16248089:+	0	+
#Deleted in new
chr7	16261898	16262096	ENSG00000229688.7|ISPD-AS1|lncRNA|chr7:16261898:16262096:+	0	+
#Deleted in new
chr7	16276576	16277361	ENSG00000214960.9|ISPD|pc|chr7:16276576:16277361:-	0	-
#Deleted in new
chr7	16471183	16471373	ENSG00000272537.1|AC005014.3|lncRNA|chr7:16471183:16471373:+	0	+
#Deleted in new
chr7	16496379	16496509	ENSG00000171243.7|SOSTDC1|pc|chr7:16496379:16496509:-	0	-
#Deleted in new
chr7	16536925	16537144	ENSG00000205858.9|LRRC72|pc|chr7:16536925:16537144:+	0	+
#Deleted in new
chr7	16593625	16594224	ENSG00000272361.2|AC005014.2|lncRNA|chr7:16593625:16594224:-	0	-
#Deleted in new
chr7	16603548	16603660	ENSG00000106524.8|ANKMY2|pc|chr7:16603548:16603660:-	0	-
#Deleted in new
chr7	16603645	16603660	ENSG00000106524.8|ANKMY2|pc|chr7:16603645:16603660:-	0	-
#Deleted in new
chr7	16661213	16661252	ENSG00000136261.14|BZW2|pc|chr7:16661213:16661252:+	0	+
#Deleted in new
chr7	16661222	16661252	ENSG00000136261.14|BZW2|pc|chr7:16661222:16661252:+	0	+
#Deleted in new
chr7	16661226	16661252	ENSG00000136261.14|BZW2|pc|chr7:16661226:16661252:+	0	+
#Deleted in new
chr7	16661271	16661312	ENSG00000136261.14|BZW2|pc|chr7:16661271:16661312:+	0	+
#Deleted in new
chr7	16700745	16700836	ENSG00000235837.1|AC073333.1|lncRNA|chr7:16700745:16700836:-	0	-
#Deleted in new
chr7	16719826	16719898	ENSG00000235837.1|AC073333.1|lncRNA|chr7:16719826:16719898:-	0	-
#Partially deleted in new
chr7	16873415	16873843	ENSG00000173467.8|AGR3|pc|chr7:16873415:16873843:-	0	-
#Deleted in new
chr7	1688118	1688150	ENSG00000225968.7|ELFN1|pc|chr7:1688118:1688150:+	0	+
#Partially deleted in new
chr7	1692295	1692450	ENSG00000234977.1|AC074389.3|lncRNA|chr7:1692295:1692450:-	0	-
#Deleted in new
chr7	1709090	1709252	ENSG00000225968.7|ELFN1|pc|chr7:1709090:1709252:+	0	+
#Deleted in new
chr7	1709161	1709252	ENSG00000225968.7|ELFN1|pc|chr7:1709161:1709252:+	0	+
#Deleted in new
chr7	17279833	17280301	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17279833:17280301:-	0	-
#Deleted in new
chr7	17279834	17280112	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17279834:17280112:-	0	-
#Deleted in new
chr7	17279943	17280304	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17279943:17280304:-	0	-
#Deleted in new
chr7	17281240	17281303	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17281240:17281303:-	0	-
#Deleted in new
chr7	17281240	17281306	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17281240:17281306:-	0	-
#Deleted in new
chr7	17281240	17281313	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17281240:17281313:-	0	-
#Deleted in new
chr7	17286242	17286516	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17286242:17286516:-	0	-
#Deleted in new
chr7	17286274	17286516	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17286274:17286516:-	0	-
#Deleted in new
chr7	17286276	17286516	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17286276:17286516:-	0	-
#Deleted in new
chr7	17286278	17286516	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17286278:17286516:-	0	-
#Deleted in new
chr7	17287751	17287814	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17287751:17287814:-	0	-
#Deleted in new
chr7	17291229	17291371	ENSG00000237773.5|AC003075.1|lncRNA|chr7:17291229:17291371:-	0	-
#Deleted in new
chr7	1738629	1739202	ENSG00000236081.1|ELFN1-AS1|lncRNA|chr7:1738629:1739202:-	0	-
#Deleted in new
chr7	1738982	1739535	ENSG00000236081.1|ELFN1-AS1|lncRNA|chr7:1738982:1739535:-	0	-
#Deleted in new
chr7	17405478	17405628	ENSG00000236039.2|AC019117.1|lncRNA|chr7:17405478:17405628:-	0	-
#Deleted in new
chr7	17434476	17434500	ENSG00000236039.2|AC019117.1|lncRNA|chr7:17434476:17434500:-	0	-
#Deleted in new
chr7	17436029	17436233	ENSG00000236039.2|AC019117.1|lncRNA|chr7:17436029:17436233:-	0	-
#Deleted in new
chr7	17439666	17439731	ENSG00000236318.2|AC019117.2|lncRNA|chr7:17439666:17439731:+	0	+
#Deleted in new
chr7	17448880	17448948	ENSG00000236318.2|AC019117.2|lncRNA|chr7:17448880:17448948:+	0	+
#Deleted in new
chr7	17450994	17451061	ENSG00000236318.2|AC019117.2|lncRNA|chr7:17450994:17451061:+	0	+
#Deleted in new
chr7	17450994	17451061	ENSG00000283321.1|AC019117.3|pc|chr7:17450994:17451061:+	0	+
#Deleted in new
chr7	17460481	17460553	ENSG00000236039.2|AC019117.1|lncRNA|chr7:17460481:17460553:-	0	-
#Deleted in new
chr7	17460481	17460672	ENSG00000236039.2|AC019117.1|lncRNA|chr7:17460481:17460672:-	0	-
#Deleted in new
chr7	17463097	17463266	ENSG00000236039.2|AC019117.1|lncRNA|chr7:17463097:17463266:-	0	-
#Deleted in new
chr7	17463399	17463542	ENSG00000236039.2|AC019117.1|lncRNA|chr7:17463399:17463542:-	0	-
#Deleted in new
chr7	17463444	17463542	ENSG00000236039.2|AC019117.1|lncRNA|chr7:17463444:17463542:-	0	-
#Deleted in new
chr7	17465169	17465226	ENSG00000236039.2|AC019117.1|lncRNA|chr7:17465169:17465226:-	0	-
#Deleted in new
chr7	17483405	17483534	ENSG00000236039.2|AC019117.1|lncRNA|chr7:17483405:17483534:-	0	-
#Deleted in new
chr7	17879426	17882943	ENSG00000071189.21|SNX13|pc|chr7:17879426:17882943:-	0	-
#Partially deleted in new
chr7	17888155	17890484	ENSG00000071189.21|SNX13|pc|chr7:17888155:17890484:-	0	-
#Deleted in new
chr7	17888559	17888722	ENSG00000071189.21|SNX13|pc|chr7:17888559:17888722:-	0	-
#Partially deleted in new
chr7	17898826	17898973	ENSG00000071189.21|SNX13|pc|chr7:17898826:17898973:-	0	-
#Partially deleted in new
chr7	17898826	17900106	ENSG00000071189.21|SNX13|pc|chr7:17898826:17900106:-	0	-
#Deleted in new
chr7	17900123	17900188	ENSG00000071189.21|SNX13|pc|chr7:17900123:17900188:-	0	-
#Deleted in new
chr7	17900123	17900248	ENSG00000071189.21|SNX13|pc|chr7:17900123:17900248:-	0	-
#Deleted in new
chr7	18000289	18000879	ENSG00000280340.1|AC080080.2|lncRNA|chr7:18000289:18000879:-	0	-
#Deleted in new
chr7	1816986	1817085	ENSG00000002822.15|MAD1L1|pc|chr7:1816986:1817085:-	0	-
#Deleted in new
chr7	1817458	1817499	ENSG00000002822.15|MAD1L1|pc|chr7:1817458:1817499:-	0	-
#Deleted in new
chr7	1829459	1829664	ENSG00000002822.15|MAD1L1|pc|chr7:1829459:1829664:-	0	-
#Deleted in new
chr7	18325511	18325592	ENSG00000048052.21|HDAC9|pc|chr7:18325511:18325592:+	0	+
#Deleted in new
chr7	1838585	1838868	ENSG00000176349.11|AC104129.1|lncRNA|chr7:1838585:1838868:+	0	+
#Deleted in new
chr7	18430478	18430738	ENSG00000225000.1|AC010082.1|lncRNA|chr7:18430478:18430738:-	0	-
#Partially deleted in new
chr7	1845299	1847096	ENSG00000176349.11|AC104129.1|lncRNA|chr7:1845299:1847096:+	0	+
#Partially deleted in new
chr7	1847247	1849931	ENSG00000176349.11|AC104129.1|lncRNA|chr7:1847247:1849931:+	0	+
#Deleted in new
chr7	1872644	1872756	ENSG00000002822.15|MAD1L1|pc|chr7:1872644:1872756:-	0	-
#Deleted in new
chr7	18851399	18851452	ENSG00000048052.21|HDAC9|pc|chr7:18851399:18851452:+	0	+
#Deleted in new
chr7	19017	19172	ENSG00000282572.2|AC215522.2|lncRNA|chr7:19017:19172:-	0	-
#Deleted in new
chr7	19020990	19021101	ENSG00000122691.12|TWIST1|pc|chr7:19020990:19021101:-	0	-
#Deleted in new
chr7	19353533	19353641	ENSG00000223838.1|AC007091.1|lncRNA|chr7:19353533:19353641:+	0	+
#Deleted in new
chr7	19354739	19354885	ENSG00000223838.1|AC007091.1|lncRNA|chr7:19354739:19354885:+	0	+
#Deleted in new
chr7	19576286	19576418	ENSG00000223838.1|AC007091.1|lncRNA|chr7:19576286:19576418:+	0	+
#Deleted in new
chr7	19618	19895	ENSG00000282572.2|AC215522.2|lncRNA|chr7:19618:19895:-	0	-
#Deleted in new
chr7	197129	197575	ENSG00000177706.8|FAM20C|pc|chr7:197129:197575:+	0	+
#Deleted in new
chr7	19816202	19816314	ENSG00000237921.2|AC004543.1|lncRNA|chr7:19816202:19816314:-	0	-
#Deleted in new
chr7	19817223	19817306	ENSG00000237921.2|AC004543.1|lncRNA|chr7:19817223:19817306:-	0	-
#Deleted in new
chr7	19817956	19818090	ENSG00000237921.2|AC004543.1|lncRNA|chr7:19817956:19818090:-	0	-
#Deleted in new
chr7	19931070	19931298	ENSG00000243004.5|AC005062.1|lncRNA|chr7:19931070:19931298:-	0	-
#Deleted in new
chr7	19931252	19931298	ENSG00000243004.5|AC005062.1|lncRNA|chr7:19931252:19931298:-	0	-
#Deleted in new
chr7	19943218	19943488	ENSG00000243004.5|AC005062.1|lncRNA|chr7:19943218:19943488:-	0	-
#Partially deleted in new
chr7	19968136	19968237	ENSG00000243004.5|AC005062.1|lncRNA|chr7:19968136:19968237:-	0	-
#Deleted in new
chr7	20007104	20007352	ENSG00000243004.5|AC005062.1|lncRNA|chr7:20007104:20007352:-	0	-
#Deleted in new
chr7	20028918	20028959	ENSG00000243004.5|AC005062.1|lncRNA|chr7:20028918:20028959:-	0	-
#Deleted in new
chr7	20045502	20045561	ENSG00000243004.5|AC005062.1|lncRNA|chr7:20045502:20045561:-	0	-
#Deleted in new
chr7	20096136	20096226	ENSG00000267055.1|AC007001.1|lncRNA|chr7:20096136:20096226:+	0	+
#Deleted in new
chr7	20125079	20125162	ENSG00000243004.5|AC005062.1|lncRNA|chr7:20125079:20125162:-	0	-
#Deleted in new
chr7	20128968	20129002	ENSG00000267055.1|AC007001.1|lncRNA|chr7:20128968:20129002:+	0	+
#Deleted in new
chr7	20129119	20129255	ENSG00000243004.5|AC005062.1|lncRNA|chr7:20129119:20129255:-	0	-
#Deleted in new
chr7	20130211	20130475	ENSG00000267055.1|AC007001.1|lncRNA|chr7:20130211:20130475:+	0	+
#Deleted in new
chr7	20131677	20131719	ENSG00000243004.5|AC005062.1|lncRNA|chr7:20131677:20131719:-	0	-
#Deleted in new
chr7	20133923	20134255	ENSG00000243004.5|AC005062.1|lncRNA|chr7:20133923:20134255:-	0	-
#Partially deleted in new
chr7	20140316	20140453	ENSG00000243004.5|AC005062.1|lncRNA|chr7:20140316:20140453:-	0	-
#Deleted in new
chr7	20150434	20150589	ENSG00000228598.1|MACC1-AS1|lncRNA|chr7:20150434:20150589:+	0	+
#Partially deleted in new
chr7	20164255	20164399	ENSG00000183742.12|MACC1|pc|chr7:20164255:20164399:-	0	-
#Partially deleted in new
chr7	20170713	20170778	ENSG00000183742.12|MACC1|pc|chr7:20170713:20170778:-	0	-
#Partially deleted in new
chr7	20170713	20170781	ENSG00000183742.12|MACC1|pc|chr7:20170713:20170781:-	0	-
#Deleted in new
chr7	20296707	20296759	ENSG00000226097.5|AC099342.1|lncRNA|chr7:20296707:20296759:+	0	+
#Deleted in new
chr7	20300058	20300226	ENSG00000226097.5|AC099342.1|lncRNA|chr7:20300058:20300226:+	0	+
#Deleted in new
chr7	20300521	20300625	ENSG00000226097.5|AC099342.1|lncRNA|chr7:20300521:20300625:+	0	+
#Deleted in new
chr7	20301011	20301057	ENSG00000226097.5|AC099342.1|lncRNA|chr7:20301011:20301057:+	0	+
#Deleted in new
chr7	20305710	20306023	ENSG00000226097.5|AC099342.1|lncRNA|chr7:20305710:20306023:+	0	+
#Deleted in new
chr7	20305791	20306023	ENSG00000226097.5|AC099342.1|lncRNA|chr7:20305791:20306023:+	0	+
#Partially deleted in new
chr7	20659065	20660394	ENSG00000004846.16|ABCB5|pc|chr7:20659065:20660394:+	0	+
#Deleted in new
chr7	20666758	20667323	ENSG00000004846.16|ABCB5|pc|chr7:20666758:20667323:+	0	+
#Deleted in new
chr7	20763255	20763468	ENSG00000004846.16|ABCB5|pc|chr7:20763255:20763468:+	0	+
#Deleted in new
chr7	20833	21029	ENSG00000282572.2|AC215522.2|lncRNA|chr7:20833:21029:-	0	-
#Deleted in new
chr7	20835430	20835504	ENSG00000232790.2|LINC01162|lncRNA|chr7:20835430:20835504:+	0	+
#Deleted in new
chr7	20882739	20882816	ENSG00000232790.2|LINC01162|lncRNA|chr7:20882739:20882816:+	0	+
#Deleted in new
chr7	2088793	2089251	ENSG00000002822.15|MAD1L1|pc|chr7:2088793:2089251:-	0	-
#Partially deleted in new
chr7	21022056	21022150	ENSG00000232790.2|LINC01162|lncRNA|chr7:21022056:21022150:+	0	+
#Deleted in new
chr7	2107426	2107708	ENSG00000002822.15|MAD1L1|pc|chr7:2107426:2107708:-	0	-
#Deleted in new
chr7	21703448	21703773	ENSG00000105877.17|DNAH11|pc|chr7:21703448:21703773:+	0	+
#Deleted in new
chr7	2175123	2175385	ENSG00000002822.15|MAD1L1|pc|chr7:2175123:2175385:-	0	-
#Deleted in new
chr7	21851161	21851320	ENSG00000105877.17|DNAH11|pc|chr7:21851161:21851320:+	0	+
#Deleted in new
chr7	21851562	21851641	ENSG00000105877.17|DNAH11|pc|chr7:21851562:21851641:+	0	+
#Deleted in new
chr7	2193258	2193475	ENSG00000002822.15|MAD1L1|pc|chr7:2193258:2193475:-	0	-
#Deleted in new
chr7	2200264	2200557	ENSG00000002822.15|MAD1L1|pc|chr7:2200264:2200557:-	0	-
#Deleted in new
chr7	2201850	2202098	ENSG00000002822.15|MAD1L1|pc|chr7:2201850:2202098:-	0	-
#Deleted in new
chr7	2209947	2210034	ENSG00000002822.15|MAD1L1|pc|chr7:2209947:2210034:-	0	-
#Deleted in new
chr7	2220883	2221022	ENSG00000002822.15|MAD1L1|pc|chr7:2220883:2221022:-	0	-
#Deleted in new
chr7	2230548	2230661	ENSG00000002822.15|MAD1L1|pc|chr7:2230548:2230661:-	0	-
#Deleted in new
chr7	2230548	2230724	ENSG00000002822.15|MAD1L1|pc|chr7:2230548:2230724:-	0	-
#Deleted in new
chr7	2230548	2230764	ENSG00000002822.15|MAD1L1|pc|chr7:2230548:2230764:-	0	-
#Deleted in new
chr7	2238014	2238937	ENSG00000122687.17|MRM2|pc|chr7:2238014:2238937:-	0	-
#Deleted in new
chr7	2239180	2239244	ENSG00000122687.17|MRM2|pc|chr7:2239180:2239244:-	0	-
#Deleted in new
chr7	2241295	2241303	ENSG00000122687.17|MRM2|pc|chr7:2241295:2241303:-	0	-
#Deleted in new
chr7	22419443	22419836	ENSG00000105889.14|STEAP1B|pc|chr7:22419443:22419836:-	0	-
#Deleted in new
chr7	2241974	2242169	ENSG00000122687.17|MRM2|pc|chr7:2241974:2242169:-	0	-
#Deleted in new
chr7	2242161	2242189	ENSG00000122687.17|MRM2|pc|chr7:2242161:2242189:-	0	-
#Deleted in new
chr7	2242161	2242198	ENSG00000122687.17|MRM2|pc|chr7:2242161:2242198:-	0	-
#Deleted in new
chr7	2242221	2242256	ENSG00000106268.15|NUDT1|pc|chr7:2242221:2242256:+	0	+
#Deleted in new
chr7	2242258	2242292	ENSG00000106268.15|NUDT1|pc|chr7:2242258:2242292:+	0	+
#Deleted in new
chr7	2242260	2242292	ENSG00000106268.15|NUDT1|pc|chr7:2242260:2242292:+	0	+
#Deleted in new
chr7	2242276	2242975	ENSG00000106268.15|NUDT1|pc|chr7:2242276:2242975:+	0	+
#Deleted in new
chr7	2242904	2242975	ENSG00000106268.15|NUDT1|pc|chr7:2242904:2242975:+	0	+
#Deleted in new
chr7	2242904	2243048	ENSG00000106268.15|NUDT1|pc|chr7:2242904:2243048:+	0	+
#Deleted in new
chr7	2242924	2242975	ENSG00000106268.15|NUDT1|pc|chr7:2242924:2242975:+	0	+
#Deleted in new
chr7	2242924	2243048	ENSG00000106268.15|NUDT1|pc|chr7:2242924:2243048:+	0	+
#Deleted in new
chr7	2248024	2248169	ENSG00000106268.15|NUDT1|pc|chr7:2248024:2248169:+	0	+
#Deleted in new
chr7	2249284	2249692	ENSG00000106268.15|NUDT1|pc|chr7:2249284:2249692:+	0	+
#Split in new
chr7	2251769	2255169	ENSG00000106266.10|SNX8|pc|chr7:2251769:2255169:-	0	-
#Partially deleted in new
chr7	22564965	22565152	ENSG00000232759.1|AC002480.2|lncRNA|chr7:22564965:22565152:+	0	+
#Partially deleted in new
chr7	22571774	22572013	ENSG00000232759.1|AC002480.2|lncRNA|chr7:22571774:22572013:+	0	+
#Deleted in new
chr7	22649959	22651153	ENSG00000238033.1|AC002480.4|lncRNA|chr7:22649959:22651153:-	0	-
#Deleted in new
chr7	22652945	22653151	ENSG00000238033.1|AC002480.4|lncRNA|chr7:22652945:22653151:-	0	-
#Deleted in new
chr7	22653246	22653414	ENSG00000238033.1|AC002480.4|lncRNA|chr7:22653246:22653414:-	0	-
#Deleted in new
chr7	22665344	22665533	ENSG00000238033.1|AC002480.4|lncRNA|chr7:22665344:22665533:-	0	-
#Partially deleted in new
chr7	227553	229557	ENSG00000249852.1|AC145676.1|lncRNA|chr7:227553:229557:-	0	-
#Deleted in new
chr7	22817339	22817355	ENSG00000196683.10|TOMM7|pc|chr7:22817339:22817355:-	0	-
#Deleted in new
chr7	22817411	22817548	ENSG00000196683.10|TOMM7|pc|chr7:22817411:22817548:-	0	-
#Deleted in new
chr7	22856972	22857016	ENSG00000228649.8|SNHG26|lncRNA|chr7:22856972:22857016:+	0	+
#Deleted in new
chr7	22856972	22857075	ENSG00000228649.8|SNHG26|lncRNA|chr7:22856972:22857075:+	0	+
#Partially deleted in new
chr7	22858570	22859487	ENSG00000228649.8|SNHG26|lncRNA|chr7:22858570:22859487:+	0	+
#Deleted in new
chr7	22860546	22861579	ENSG00000228649.8|SNHG26|lncRNA|chr7:22860546:22861579:+	0	+
#Deleted in new
chr7	2309804	2309946	ENSG00000106266.10|SNX8|pc|chr7:2309804:2309946:-	0	-
#Deleted in new
chr7	23101227	23103578	ENSG00000230658.1|KLHL7-AS1|lncRNA|chr7:23101227:23103578:-	0	-
#Partially deleted in new
chr7	23125760	23126043	ENSG00000122550.17|KLHL7|pc|chr7:23125760:23126043:+	0	+
#Partially deleted in new
chr7	23125760	23126045	ENSG00000122550.17|KLHL7|pc|chr7:23125760:23126045:+	0	+
#Partially deleted in new
chr7	23125760	23126049	ENSG00000122550.17|KLHL7|pc|chr7:23125760:23126049:+	0	+
#Deleted in new
chr7	23155990	23156168	ENSG00000122550.17|KLHL7|pc|chr7:23155990:23156168:+	0	+
#Deleted in new
chr7	23194923	23194965	ENSG00000136243.16|NUPL2|pc|chr7:23194923:23194965:+	0	+
#Deleted in new
chr7	23197172	23197230	ENSG00000136243.16|NUPL2|pc|chr7:23197172:23197230:+	0	+
#Deleted in new
chr7	23197172	23197247	ENSG00000136243.16|NUPL2|pc|chr7:23197172:23197247:+	0	+
#Deleted in new
chr7	23197172	23197284	ENSG00000136243.16|NUPL2|pc|chr7:23197172:23197284:+	0	+
#Deleted in new
chr7	23198220	23198399	ENSG00000136243.16|NUPL2|pc|chr7:23198220:23198399:+	0	+
#Deleted in new
chr7	23273080	23273176	ENSG00000136235.15|GPNMB|pc|chr7:23273080:23273176:+	0	+
#Deleted in new
chr7	23273268	23273371	ENSG00000136235.15|GPNMB|pc|chr7:23273268:23273371:+	0	+
#Deleted in new
chr7	2337115	2337281	ENSG00000106266.10|SNX8|pc|chr7:2337115:2337281:-	0	-
#Deleted in new
chr7	23402570	23402585	ENSG00000136231.13|IGF2BP3|pc|chr7:23402570:23402585:-	0	-
#Partially deleted in new
chr7	23413243	23415565	ENSG00000136231.13|IGF2BP3|pc|chr7:23413243:23415565:-	0	-
#Deleted in new
chr7	23604085	23604279	ENSG00000169193.11|CCDC126|pc|chr7:23604085:23604279:+	0	+
#Deleted in new
chr7	23604141	23604279	ENSG00000169193.11|CCDC126|pc|chr7:23604141:23604279:+	0	+
#Partially deleted in new
chr7	23686288	23688987	ENSG00000188732.10|FAM221A|pc|chr7:23686288:23688987:+	0	+
#Deleted in new
chr7	23688227	23688323	ENSG00000188732.10|FAM221A|pc|chr7:23688227:23688323:+	0	+
#Deleted in new
chr7	23692182	23692253	ENSG00000188732.10|FAM221A|pc|chr7:23692182:23692253:+	0	+
#Partially deleted in new
chr7	23692182	23694913	ENSG00000188732.10|FAM221A|pc|chr7:23692182:23694913:+	0	+
#Deleted in new
chr7	23702693	23703249	ENSG00000188732.10|FAM221A|pc|chr7:23702693:23703249:+	0	+
#Partially deleted in new
chr7	2371776	2372190	ENSG00000106263.17|EIF3B|pc|chr7:2371776:2372190:+	0	+
#Deleted in new
chr7	23722108	23722187	ENSG00000196335.12|STK31|pc|chr7:23722108:23722187:+	0	+
#Deleted in new
chr7	23722319	23722480	ENSG00000196335.12|STK31|pc|chr7:23722319:23722480:+	0	+
#Deleted in new
chr7	23722759	23722949	ENSG00000196335.12|STK31|pc|chr7:23722759:23722949:+	0	+
#Deleted in new
chr7	23725877	23726411	ENSG00000196335.12|STK31|pc|chr7:23725877:23726411:+	0	+
#Partially deleted in new
chr7	2373117	2375527	ENSG00000106263.17|EIF3B|pc|chr7:2373117:2375527:+	0	+
#Deleted in new
chr7	23755055	23755196	ENSG00000196335.12|STK31|pc|chr7:23755055:23755196:+	0	+
#Partially deleted in new
chr7	2375974	2377075	ENSG00000106263.17|EIF3B|pc|chr7:2375974:2377075:+	0	+
#Deleted in new
chr7	23897260	23897335	ENSG00000227930.1|AC003087.1|lncRNA|chr7:23897260:23897335:-	0	-
#Deleted in new
chr7	24196661	24197029	ENSG00000228944.1|AC004485.1|lncRNA|chr7:24196661:24197029:-	0	-
#Deleted in new
chr7	24255560	24255719	ENSG00000228944.1|AC004485.1|lncRNA|chr7:24255560:24255719:-	0	-
#Deleted in new
chr7	24313	24365	ENSG00000283061.1|AC215522.3|lncRNA|chr7:24313:24365:+	0	+
#Partially deleted in new
chr7	2432562	2448483	ENSG00000136213.9|CHST12|pc|chr7:2432562:2448483:+	0	+
#Deleted in new
chr7	2437762	2437920	ENSG00000136213.9|CHST12|pc|chr7:2437762:2437920:+	0	+
#Partially deleted in new
chr7	2445941	2447850	ENSG00000136213.9|CHST12|pc|chr7:2445941:2447850:+	0	+
#Deleted in new
chr7	24620051	24620220	ENSG00000105926.15|MPP6|pc|chr7:24620051:24620220:+	0	+
#Deleted in new
chr7	24624061	24624070	ENSG00000105926.15|MPP6|pc|chr7:24624061:24624070:+	0	+
#Deleted in new
chr7	24624061	24624156	ENSG00000105926.15|MPP6|pc|chr7:24624061:24624156:+	0	+
#Deleted in new
chr7	24666864	24666982	ENSG00000105926.15|MPP6|pc|chr7:24666864:24666982:+	0	+
#Deleted in new
chr7	24715490	24715573	ENSG00000105928.13|DFNA5|pc|chr7:24715490:24715573:-	0	-
#Partially deleted in new
chr7	24716468	24717374	ENSG00000105928.13|DFNA5|pc|chr7:24716468:24717374:-	0	-
#Deleted in new
chr7	24724685	24724784	ENSG00000105928.13|DFNA5|pc|chr7:24724685:24724784:-	0	-
#Partially deleted in new
chr7	24743344	24744754	ENSG00000105928.13|DFNA5|pc|chr7:24743344:24744754:-	0	-
#Deleted in new
chr7	24757706	24757940	ENSG00000105928.13|DFNA5|pc|chr7:24757706:24757940:-	0	-
#Deleted in new
chr7	24757706	24758020	ENSG00000105928.13|DFNA5|pc|chr7:24757706:24758020:-	0	-
#Deleted in new
chr7	24757706	24758113	ENSG00000105928.13|DFNA5|pc|chr7:24757706:24758113:-	0	-
#Deleted in new
chr7	2513156	2513328	ENSG00000106003.12|LFNG|pc|chr7:2513156:2513328:+	0	+
#Deleted in new
chr7	2518547	2518598	ENSG00000106003.12|LFNG|pc|chr7:2518547:2518598:+	0	+
#Deleted in new
chr7	2518553	2518598	ENSG00000106003.12|LFNG|pc|chr7:2518553:2518598:+	0	+
#Partially deleted in new
chr7	2528873	2529177	ENSG00000106003.12|LFNG|pc|chr7:2528873:2529177:+	0	+
#Deleted in new
chr7	25321301	25321516	ENSG00000233824.1|AC003985.1|lncRNA|chr7:25321301:25321516:-	0	-
#Partially deleted in new
chr7	2539785	2541052	ENSG00000106009.15|BRAT1|pc|chr7:2539785:2541052:-	0	-
#Deleted in new
chr7	2540829	2540894	ENSG00000106009.15|BRAT1|pc|chr7:2540829:2540894:-	0	-
#Deleted in new
chr7	25661669	25661731	ENSG00000223561.6|AC005165.1|lncRNA|chr7:25661669:25661731:-	0	-
#Deleted in new
chr7	2566558	2566602	ENSG00000106012.17|IQCE|pc|chr7:2566558:2566602:+	0	+
#Partially deleted in new
chr7	257004	257453	ENSG00000177706.8|FAM20C|pc|chr7:257004:257453:+	0	+
#Deleted in new
chr7	2572713	2572821	ENSG00000106012.17|IQCE|pc|chr7:2572713:2572821:+	0	+
#Deleted in new
chr7	2580109	2580250	ENSG00000106012.17|IQCE|pc|chr7:2580109:2580250:+	0	+
#Deleted in new
chr7	2582026	2582077	ENSG00000106012.17|IQCE|pc|chr7:2582026:2582077:+	0	+
#Partially deleted in new
chr7	2584235	2584666	ENSG00000106012.17|IQCE|pc|chr7:2584235:2584666:+	0	+
#Deleted in new
chr7	2596898	2597137	ENSG00000106012.17|IQCE|pc|chr7:2596898:2597137:+	0	+
#Partially deleted in new
chr7	2598125	2598384	ENSG00000106012.17|IQCE|pc|chr7:2598125:2598384:+	0	+
#Partially deleted in new
chr7	2601440	2601949	ENSG00000106012.17|IQCE|pc|chr7:2601440:2601949:+	0	+
#Partially deleted in new
chr7	26173532	26174945	ENSG00000273237.1|AC004520.1|lncRNA|chr7:26173532:26174945:-	0	-
#Deleted in new
chr7	26195711	26195909	ENSG00000122566.20|HNRNPA2B1|pc|chr7:26195711:26195909:-	0	-
#Deleted in new
chr7	26195846	26195855	ENSG00000122566.20|HNRNPA2B1|pc|chr7:26195846:26195855:-	0	-
#Deleted in new
chr7	26195846	26195909	ENSG00000122566.20|HNRNPA2B1|pc|chr7:26195846:26195909:-	0	-
#Deleted in new
chr7	26209939	26210582	ENSG00000122565.18|CBX3|pc|chr7:26209939:26210582:+	0	+
#Deleted in new
chr7	26288	26402	ENSG00000282572.2|AC215522.2|lncRNA|chr7:26288:26402:-	0	-
#Deleted in new
chr7	26291894	26292133	ENSG00000086300.15|SNX10|pc|chr7:26291894:26292133:+	0	+
#Deleted in new
chr7	26291920	26292086	ENSG00000086300.15|SNX10|pc|chr7:26291920:26292086:+	0	+
#Deleted in new
chr7	26291922	26292086	ENSG00000086300.15|SNX10|pc|chr7:26291922:26292086:+	0	+
#Deleted in new
chr7	26292010	26292086	ENSG00000086300.15|SNX10|pc|chr7:26292010:26292086:+	0	+
#Deleted in new
chr7	26354056	26354184	ENSG00000086300.15|SNX10|pc|chr7:26354056:26354184:+	0	+
#Deleted in new
chr7	26360453	26360464	ENSG00000086300.15|SNX10|pc|chr7:26360453:26360464:+	0	+
#Deleted in new
chr7	26360605	26360618	ENSG00000086300.15|SNX10|pc|chr7:26360605:26360618:+	0	+
#Deleted in new
chr7	2645531	2645886	ENSG00000136295.14|TTYH3|pc|chr7:2645531:2645886:+	0	+
#Deleted in new
chr7	26493794	26494114	ENSG00000214870.8|AC004540.1|lncRNA|chr7:26493794:26494114:+	0	+
#Deleted in new
chr7	26493794	26494144	ENSG00000214870.8|AC004540.1|lncRNA|chr7:26493794:26494144:+	0	+
#Deleted in new
chr7	26493794	26494256	ENSG00000214870.8|AC004540.1|lncRNA|chr7:26493794:26494256:+	0	+
#Deleted in new
chr7	26538405	26538788	ENSG00000122548.5|KIAA0087|lncRNA|chr7:26538405:26538788:-	0	-
#Deleted in new
chr7	26637870	26637936	ENSG00000222004.7|C7orf71|lncRNA|chr7:26637870:26637936:+	0	+
#Deleted in new
chr7	26638456	26639344	ENSG00000222004.7|C7orf71|lncRNA|chr7:26638456:26639344:+	0	+
#Deleted in new
chr7	26638494	26639344	ENSG00000222004.7|C7orf71|lncRNA|chr7:26638494:26639344:+	0	+
#Deleted in new
chr7	26640695	26640764	ENSG00000222004.7|C7orf71|lncRNA|chr7:26640695:26640764:+	0	+
#Deleted in new
chr7	26746566	26746686	ENSG00000005020.12|SKAP2|pc|chr7:26746566:26746686:-	0	-
#Deleted in new
chr7	26964	27199	ENSG00000283061.1|AC215522.3|lncRNA|chr7:26964:27199:+	0	+
#Deleted in new
chr7	26964	27234	ENSG00000283061.1|AC215522.3|lncRNA|chr7:26964:27234:+	0	+
#Deleted in new
chr7	2702020	2702444	ENSG00000174945.13|AMZ1|pc|chr7:2702020:2702444:+	0	+
#Deleted in new
chr7	2702529	2702605	ENSG00000174945.13|AMZ1|pc|chr7:2702529:2702605:+	0	+
#Partially deleted in new
chr7	2712329	2716529	ENSG00000174945.13|AMZ1|pc|chr7:2712329:2716529:+	0	+
#Partially deleted in new
chr7	27247367	27247401	ENSG00000106038.12|EVX1|pc|chr7:27247367:27247401:+	0	+
#Deleted in new
chr7	27361842	27361970	ENSG00000224322.1|AC004009.1|lncRNA|chr7:27361842:27361970:+	0	+
#Deleted in new
chr7	27408808	27408958	ENSG00000224322.1|AC004009.1|lncRNA|chr7:27408808:27408958:+	0	+
#Deleted in new
chr7	27409920	27409938	ENSG00000224322.1|AC004009.1|lncRNA|chr7:27409920:27409938:+	0	+
#Deleted in new
chr7	2760341	2760452	ENSG00000146535.13|GNA12|pc|chr7:2760341:2760452:-	0	-
#Deleted in new
chr7	2762169	2762393	ENSG00000146535.13|GNA12|pc|chr7:2762169:2762393:-	0	-
#Deleted in new
chr7	2762591	2763140	ENSG00000146535.13|GNA12|pc|chr7:2762591:2763140:-	0	-
#Deleted in new
chr7	2763075	2763209	ENSG00000146535.13|GNA12|pc|chr7:2763075:2763209:-	0	-
#Deleted in new
chr7	2763079	2763327	ENSG00000146535.13|GNA12|pc|chr7:2763079:2763327:-	0	-
#Deleted in new
chr7	2764607	2764939	ENSG00000174945.13|AMZ1|pc|chr7:2764607:2764939:+	0	+
#Deleted in new
chr7	2764711	2765125	ENSG00000174945.13|AMZ1|pc|chr7:2764711:2765125:+	0	+
#Deleted in new
chr7	27771926	27772539	ENSG00000106052.13|TAX1BP1|pc|chr7:27771926:27772539:+	0	+
#Deleted in new
chr7	27846502	27846547	ENSG00000153814.11|JAZF1|pc|chr7:27846502:27846547:-	0	-
#Deleted in new
chr7	28185669	28185752	ENSG00000234336.6|JAZF1-AS1|lncRNA|chr7:28185669:28185752:+	0	+
#Deleted in new
chr7	28240456	28240731	ENSG00000234336.6|JAZF1-AS1|lncRNA|chr7:28240456:28240731:+	0	+
#Deleted in new
chr7	28240456	28240764	ENSG00000234336.6|JAZF1-AS1|lncRNA|chr7:28240456:28240764:+	0	+
#Deleted in new
chr7	28996164	28996251	ENSG00000272568.5|AC005162.3|lncRNA|chr7:28996164:28996251:+	0	+
#Deleted in new
chr7	29000968	29001030	ENSG00000272568.5|AC005162.3|lncRNA|chr7:29000968:29001030:+	0	+
#Deleted in new
chr7	29000970	29001030	ENSG00000272568.5|AC005162.3|lncRNA|chr7:29000970:29001030:+	0	+
#Deleted in new
chr7	29001042	29001055	ENSG00000272568.5|AC005162.3|lncRNA|chr7:29001042:29001055:+	0	+
#Partially deleted in new
chr7	29001204	29001384	ENSG00000272568.5|AC005162.3|lncRNA|chr7:29001204:29001384:+	0	+
#Deleted in new
chr7	29080283	29080328	ENSG00000229452.1|AC005162.1|lncRNA|chr7:29080283:29080328:+	0	+
#Partially deleted in new
chr7	29122273	29122642	ENSG00000106069.21|CHN2|pc|chr7:29122273:29122642:+	0	+
#Partially deleted in new
chr7	29126855	29126939	ENSG00000106069.21|CHN2|pc|chr7:29126855:29126939:+	0	+
#Partially deleted in new
chr7	29128020	29128167	ENSG00000106069.21|CHN2|pc|chr7:29128020:29128167:+	0	+
#Deleted in new
chr7	29148501	29148657	ENSG00000106069.21|CHN2|pc|chr7:29148501:29148657:+	0	+
#Deleted in new
chr7	29184420	29184548	ENSG00000106066.14|CPVL|pc|chr7:29184420:29184548:-	0	-
#Deleted in new
chr7	29186446	29186547	ENSG00000106066.14|CPVL|pc|chr7:29186446:29186547:-	0	-
#Partially deleted in new
chr7	29292924	29292963	ENSG00000106069.21|CHN2|pc|chr7:29292924:29292963:+	0	+
#Deleted in new
chr7	29332908	29332981	ENSG00000106069.21|CHN2|pc|chr7:29332908:29332981:+	0	+
#Deleted in new
chr7	29334504	29334573	ENSG00000106069.21|CHN2|pc|chr7:29334504:29334573:+	0	+
#Deleted in new
chr7	29334507	29334573	ENSG00000106069.21|CHN2|pc|chr7:29334507:29334573:+	0	+
#Deleted in new
chr7	29334517	29334573	ENSG00000106069.21|CHN2|pc|chr7:29334517:29334573:+	0	+
#Deleted in new
chr7	294232	294422	ENSG00000248767.2|AC187653.1|pc|chr7:294232:294422:+	0	+
#Deleted in new
chr7	2946596	2947091	ENSG00000237286.1|AC004906.1|lncRNA|chr7:2946596:2947091:+	0	+
#Deleted in new
chr7	29483815	29483975	ENSG00000106069.21|CHN2|pc|chr7:29483815:29483975:+	0	+
#Deleted in new
chr7	29561858	29561922	ENSG00000223813.2|AC007255.1|lncRNA|chr7:29561858:29561922:-	0	-
#Deleted in new
chr7	30008227	30008377	ENSG00000227014.5|AC007285.1|lncRNA|chr7:30008227:30008377:+	0	+
#Deleted in new
chr7	30075058	30075115	ENSG00000231519.1|AC007285.2|lncRNA|chr7:30075058:30075115:-	0	-
#Deleted in new
chr7	30090152	30090744	ENSG00000106086.18|PLEKHA8|pc|chr7:30090152:30090744:+	0	+
#Deleted in new
chr7	30129265	30129472	ENSG00000106086.18|PLEKHA8|pc|chr7:30129265:30129472:+	0	+
#Deleted in new
chr7	30129265	30130483	ENSG00000106086.18|PLEKHA8|pc|chr7:30129265:30130483:+	0	+
#Deleted in new
chr7	30137258	30137694	ENSG00000180354.15|MTURN|pc|chr7:30137258:30137694:+	0	+
#Deleted in new
chr7	30141312	30141417	ENSG00000230751.1|AC007036.2|lncRNA|chr7:30141312:30141417:+	0	+
#Deleted in new
chr7	30390884	30391035	ENSG00000281404.1|LINC01176|lncRNA|chr7:30390884:30391035:+	0	+
#Deleted in new
chr7	30390907	30391035	ENSG00000281404.1|LINC01176|lncRNA|chr7:30390907:30391035:+	0	+
#Deleted in new
chr7	30402911	30403022	ENSG00000281404.1|LINC01176|lncRNA|chr7:30402911:30403022:+	0	+
#Deleted in new
chr7	30403601	30404055	ENSG00000281404.1|LINC01176|lncRNA|chr7:30403601:30404055:+	0	+
#Deleted in new
chr7	30411897	30411954	ENSG00000281404.1|LINC01176|lncRNA|chr7:30411897:30411954:+	0	+
#Deleted in new
chr7	30411897	30412073	ENSG00000281593.1|AC006978.2|pc|chr7:30411897:30412073:+	0	+
#Deleted in new
chr7	30412330	30412375	ENSG00000281404.1|LINC01176|lncRNA|chr7:30412330:30412375:+	0	+
#Deleted in new
chr7	30412330	30412502	ENSG00000281593.1|AC006978.2|pc|chr7:30412330:30412502:+	0	+
#Deleted in new
chr7	30428503	30428609	ENSG00000106100.10|NOD1|pc|chr7:30428503:30428609:-	0	-
#Deleted in new
chr7	30459151	30459240	ENSG00000106100.10|NOD1|pc|chr7:30459151:30459240:-	0	-
#Deleted in new
chr7	30463608	30463698	ENSG00000106100.10|NOD1|pc|chr7:30463608:30463698:-	0	-
#Deleted in new
chr7	30463985	30464061	ENSG00000106100.10|NOD1|pc|chr7:30463985:30464061:-	0	-
#Deleted in new
chr7	30516974	30517498	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30516974:30517498:-	0	-
#Deleted in new
chr7	30517205	30517498	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30517205:30517498:-	0	-
#Deleted in new
chr7	30525730	30525817	ENSG00000264520.1|AC005154.5|lncRNA|chr7:30525730:30525817:+	0	+
#Deleted in new
chr7	30528355	30528715	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30528355:30528715:-	0	-
#Deleted in new
chr7	30533395	30533613	ENSG00000264520.1|AC005154.5|lncRNA|chr7:30533395:30533613:+	0	+
#Deleted in new
chr7	30544793	30545088	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30544793:30545088:-	0	-
#Deleted in new
chr7	30547165	30547372	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30547165:30547372:-	0	-
#Partially deleted in new
chr7	30548356	30562128	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30548356:30562128:-	0	-
#Deleted in new
chr7	30550216	30550344	ENSG00000263683.1|AC005154.4|lncRNA|chr7:30550216:30550344:+	0	+
#Deleted in new
chr7	30552099	30552177	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30552099:30552177:-	0	-
#Deleted in new
chr7	30552099	30552179	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30552099:30552179:-	0	-
#Deleted in new
chr7	30552099	30552220	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30552099:30552220:-	0	-
#Deleted in new
chr7	30558095	30559355	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30558095:30559355:-	0	-
#Deleted in new
chr7	30561465	30561487	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30561465:30561487:-	0	-
#Deleted in new
chr7	30561465	30561516	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30561465:30561516:-	0	-
#Deleted in new
chr7	30561465	30561519	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30561465:30561519:-	0	-
#Deleted in new
chr7	30561465	30561703	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30561465:30561703:-	0	-
#Deleted in new
chr7	30561465	30562128	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30561465:30562128:-	0	-
#Deleted in new
chr7	30561561	30562128	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30561561:30562128:-	0	-
#Deleted in new
chr7	30562076	30562128	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30562076:30562128:-	0	-
#Deleted in new
chr7	30562741	30562825	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30562741:30562825:-	0	-
#Deleted in new
chr7	30563722	30563998	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30563722:30563998:-	0	-
#Partially deleted in new
chr7	30563722	30564617	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30563722:30564617:-	0	-
#Deleted in new
chr7	30563730	30563893	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30563730:30563893:-	0	-
#Deleted in new
chr7	30563730	30563998	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30563730:30563998:-	0	-
#Deleted in new
chr7	30564143	30564255	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30564143:30564255:-	0	-
#Partially deleted in new
chr7	30564143	30564798	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30564143:30564798:-	0	-
#Deleted in new
chr7	30564146	30564473	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30564146:30564473:-	0	-
#Deleted in new
chr7	30566403	30568989	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30566403:30568989:-	0	-
#Deleted in new
chr7	30568487	30568657	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30568487:30568657:-	0	-
#Deleted in new
chr7	30568676	30568989	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30568676:30568989:-	0	-
#Deleted in new
chr7	30568801	30568989	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30568801:30568989:-	0	-
#Deleted in new
chr7	30568832	30568989	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30568832:30568989:-	0	-
#Deleted in new
chr7	30568832	30568994	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30568832:30568994:-	0	-
#Deleted in new
chr7	30572999	30573013	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30572999:30573013:-	0	-
#Deleted in new
chr7	30572999	30573088	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30572999:30573088:-	0	-
#Deleted in new
chr7	30572999	30573100	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30572999:30573100:-	0	-
#Deleted in new
chr7	30572999	30573148	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30572999:30573148:-	0	-
#Deleted in new
chr7	30572999	30573782	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30572999:30573782:-	0	-
#Deleted in new
chr7	30574422	30574881	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30574422:30574881:-	0	-
#Deleted in new
chr7	30574703	30574881	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30574703:30574881:-	0	-
#Deleted in new
chr7	30576563	30576710	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30576563:30576710:-	0	-
#Deleted in new
chr7	30576563	30576742	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30576563:30576742:-	0	-
#Deleted in new
chr7	30577511	30578091	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30577511:30578091:-	0	-
#Deleted in new
chr7	30577584	30578091	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30577584:30578091:-	0	-
#Deleted in new
chr7	30577648	30577759	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30577648:30577759:-	0	-
#Deleted in new
chr7	30577903	30578091	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30577903:30578091:-	0	-
#Deleted in new
chr7	30578067	30578091	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30578067:30578091:-	0	-
#Deleted in new
chr7	30578069	30578091	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30578069:30578091:-	0	-
#Deleted in new
chr7	30579005	30579128	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30579005:30579128:-	0	-
#Deleted in new
chr7	30579230	30579314	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30579230:30579314:-	0	-
#Deleted in new
chr7	30584422	30584453	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30584422:30584453:-	0	-
#Deleted in new
chr7	30584710	30584808	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30584710:30584808:-	0	-
#Deleted in new
chr7	30585329	30585479	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30585329:30585479:-	0	-
#Deleted in new
chr7	30585329	30585972	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30585329:30585972:-	0	-
#Partially deleted in new
chr7	30594710	30594743	ENSG00000196295.11|AC005154.1|lncRNA|chr7:30594710:30594743:-	0	-
#Partially deleted in new
chr7	30755421	30757602	ENSG00000241644.2|INMT|pc|chr7:30755421:30757602:+	0	+
#Deleted in new
chr7	30766344	30766561	ENSG00000254959.6|INMT-MINDY4|pc|chr7:30766344:30766561:+	0	+
#Deleted in new
chr7	30796690	30796894	ENSG00000229263.1|AC004691.1|lncRNA|chr7:30796690:30796894:-	0	-
#Deleted in new
chr7	30985084	30985216	ENSG00000106128.18|GHRHR|pc|chr7:30985084:30985216:+	0	+
#Deleted in new
chr7	31056930	31057103	ENSG00000078549.14|ADCYAP1R1|pc|chr7:31056930:31057103:+	0	+
#Deleted in new
chr7	31059	31194	ENSG00000282572.2|AC215522.2|lncRNA|chr7:31059:31194:-	0	-
#Deleted in new
chr7	31059	31606	ENSG00000282572.2|AC215522.2|lncRNA|chr7:31059:31606:-	0	-
#Deleted in new
chr7	31389	31606	ENSG00000282572.2|AC215522.2|lncRNA|chr7:31389:31606:-	0	-
#Partially deleted in new
chr7	31414644	31414882	ENSG00000231418.1|AC005090.1|lncRNA|chr7:31414644:31414882:-	0	-
#Deleted in new
chr7	3148980	3149068	ENSG00000217455.8|AC073316.1|lncRNA|chr7:3148980:3149068:-	0	-
#Partially deleted in new
chr7	31517363	31518337	ENSG00000180347.13|CCDC129|pc|chr7:31517363:31518337:+	0	+
#Deleted in new
chr7	3158137	3158255	ENSG00000217455.8|AC073316.1|lncRNA|chr7:3158137:3158255:-	0	-
#Deleted in new
chr7	3158137	3158571	ENSG00000217455.8|AC073316.1|lncRNA|chr7:3158137:3158571:-	0	-
#Deleted in new
chr7	3158490	3158571	ENSG00000217455.8|AC073316.1|lncRNA|chr7:3158490:3158571:-	0	-
#Deleted in new
chr7	3166030	3166131	ENSG00000217455.8|AC073316.1|lncRNA|chr7:3166030:3166131:-	0	-
#Deleted in new
chr7	31695962	31696078	ENSG00000106341.10|PPP1R17|pc|chr7:31695962:31696078:+	0	+
#Deleted in new
chr7	3198012	3198063	ENSG00000231892.1|AC073316.2|lncRNA|chr7:3198012:3198063:-	0	-
#Deleted in new
chr7	3198194	3198256	ENSG00000231892.1|AC073316.2|lncRNA|chr7:3198194:3198256:-	0	-
#Duplicated in new
chr7	32487684	32488061	ENSG00000106355.9|LSM5|pc|chr7:32487684:32488061:-	0	-
#Partially deleted in new
chr7	32489463	32489600	ENSG00000106355.9|LSM5|pc|chr7:32489463:32489600:-	0	-
#Partially deleted in new
chr7	32531614	32539269	ENSG00000105778.18|AVL9|pc|chr7:32531614:32539269:+	0	+
#Deleted in new
chr7	32559952	32559958	ENSG00000105778.18|AVL9|pc|chr7:32559952:32559958:+	0	+
#Partially deleted in new
chr7	32874521	32875157	ENSG00000170852.10|KBTBD2|pc|chr7:32874521:32875157:-	0	-
#Partially deleted in new
chr7	32891535	32891897	ENSG00000170852.10|KBTBD2|pc|chr7:32891535:32891897:-	0	-
#Deleted in new
chr7	32893834	32894131	ENSG00000170852.10|KBTBD2|pc|chr7:32893834:32894131:-	0	-
#Deleted in new
chr7	32979473	32979583	ENSG00000122642.10|FKBP9|pc|chr7:32979473:32979583:+	0	+
#Deleted in new
chr7	32994990	32995080	ENSG00000122642.10|FKBP9|pc|chr7:32994990:32995080:+	0	+
#Deleted in new
chr7	32994990	32995105	ENSG00000122642.10|FKBP9|pc|chr7:32994990:32995105:+	0	+
#Deleted in new
chr7	33029628	33029709	ENSG00000122643.18|NT5C3A|pc|chr7:33029628:33029709:-	0	-
#Deleted in new
chr7	33029628	33029714	ENSG00000122643.18|NT5C3A|pc|chr7:33029628:33029714:-	0	-
#Deleted in new
chr7	33100706	33100886	ENSG00000164610.8|RP9|pc|chr7:33100706:33100886:-	0	-
#Duplicated in new
chr7	33129243	33129552	ENSG00000122507.20|BBS9|pc|chr7:33129243:33129552:+	0	+
#Deleted in new
chr7	33314259	33314571	ENSG00000122507.20|BBS9|pc|chr7:33314259:33314571:+	0	+
#Deleted in new
chr7	33351926	33352049	ENSG00000122507.20|BBS9|pc|chr7:33351926:33352049:+	0	+
#Deleted in new
chr7	33680	33792	ENSG00000282572.2|AC215522.2|lncRNA|chr7:33680:33792:-	0	-
#Deleted in new
chr7	33730291	33730618	ENSG00000227481.1|AC008080.2|lncRNA|chr7:33730291:33730618:-	0	-
#Deleted in new
chr7	33796701	33796809	ENSG00000236494.1|AC008080.4|lncRNA|chr7:33796701:33796809:-	0	-
#Deleted in new
chr7	33869374	33869500	ENSG00000233219.1|AC008080.3|lncRNA|chr7:33869374:33869500:-	0	-
#Deleted in new
chr7	34255926	34256343	ENSG00000236212.1|AC009262.1|lncRNA|chr7:34255926:34256343:+	0	+
#Partially deleted in new
chr7	34346511	34350847	ENSG00000197085.11|NPSR1-AS1|lncRNA|chr7:34346511:34350847:-	0	-
#Deleted in new
chr7	34417578	34417672	ENSG00000197085.11|NPSR1-AS1|lncRNA|chr7:34417578:34417672:-	0	-
#Deleted in new
chr7	34569711	34569861	ENSG00000197085.11|NPSR1-AS1|lncRNA|chr7:34569711:34569861:-	0	-
#Deleted in new
chr7	34643226	34643351	ENSG00000197085.11|NPSR1-AS1|lncRNA|chr7:34643226:34643351:-	0	-
#Deleted in new
chr7	34685750	34686156	ENSG00000187258.13|NPSR1|pc|chr7:34685750:34686156:+	0	+
#Deleted in new
chr7	34728736	34728816	ENSG00000197085.11|NPSR1-AS1|lncRNA|chr7:34728736:34728816:-	0	-
#Deleted in new
chr7	3476050	3476057	ENSG00000146555.18|SDK1|pc|chr7:3476050:3476057:+	0	+
#Deleted in new
chr7	34768341	34768440	ENSG00000197085.11|NPSR1-AS1|lncRNA|chr7:34768341:34768440:-	0	-
#Deleted in new
chr7	34779542	34779840	ENSG00000187258.13|NPSR1|pc|chr7:34779542:34779840:+	0	+
#Deleted in new
chr7	34871498	34871582	ENSG00000197085.11|NPSR1-AS1|lncRNA|chr7:34871498:34871582:-	0	-
#Partially deleted in new
chr7	35258380	35258617	ENSG00000226063.1|AC009531.1|lncRNA|chr7:35258380:35258617:-	0	-
#Deleted in new
chr7	35334	35457	ENSG00000282572.2|AC215522.2|lncRNA|chr7:35334:35457:-	0	-
#Deleted in new
chr7	35334	35489	ENSG00000282572.2|AC215522.2|lncRNA|chr7:35334:35489:-	0	-
#Deleted in new
chr7	35510233	35510263	ENSG00000235464.1|AC007652.1|lncRNA|chr7:35510233:35510263:-	0	-
#Partially deleted in new
chr7	35719069	35719534	ENSG00000227544.8|AC018647.1|lncRNA|chr7:35719069:35719534:+	0	+
#Partially deleted in new
chr7	35719069	35719695	ENSG00000227544.8|AC018647.1|lncRNA|chr7:35719069:35719695:+	0	+
#Partially deleted in new
chr7	35719069	35719712	ENSG00000227544.8|AC018647.1|lncRNA|chr7:35719069:35719712:+	0	+
#Deleted in new
chr7	35763763	35763909	ENSG00000228878.7|SEPT7-AS1|lncRNA|chr7:35763763:35763909:-	0	-
#Deleted in new
chr7	35793905	35794022	ENSG00000228878.7|SEPT7-AS1|lncRNA|chr7:35793905:35794022:-	0	-
#Deleted in new
chr7	35838563	35838657	ENSG00000122545.18|SEPT7|pc|chr7:35838563:35838657:+	0	+
#Deleted in new
chr7	35847914	35848004	ENSG00000122545.18|SEPT7|pc|chr7:35847914:35848004:+	0	+
#Deleted in new
chr7	36030553	36030672	ENSG00000232930.1|AC083864.2|lncRNA|chr7:36030553:36030672:+	0	+
#Deleted in new
chr7	36055408	36055431	ENSG00000232930.1|AC083864.2|lncRNA|chr7:36055408:36055431:+	0	+
#Partially deleted in new
chr7	36084471	36085736	ENSG00000205745.2|AC083864.1|lncRNA|chr7:36084471:36085736:+	0	+
#Deleted in new
chr7	36095271	36095498	ENSG00000261184.1|AC083864.3|lncRNA|chr7:36095271:36095498:+	0	+
#Deleted in new
chr7	36095287	36095376	ENSG00000261184.1|AC083864.3|lncRNA|chr7:36095287:36095376:+	0	+
#Deleted in new
chr7	36098987	36099543	ENSG00000261184.1|AC083864.3|lncRNA|chr7:36098987:36099543:+	0	+
#Deleted in new
chr7	36098987	36100653	ENSG00000261184.1|AC083864.3|lncRNA|chr7:36098987:36100653:+	0	+
#Deleted in new
chr7	36319774	36320479	ENSG00000260070.1|AC006960.3|lncRNA|chr7:36319774:36320479:+	0	+
#Deleted in new
chr7	36368199	36368357	ENSG00000164542.12|KIAA0895|pc|chr7:36368199:36368357:-	0	-
#Deleted in new
chr7	36403492	36403566	ENSG00000011426.10|ANLN|pc|chr7:36403492:36403566:+	0	+
#Deleted in new
chr7	3642814	3643351	ENSG00000236510.1|AC011284.1|lncRNA|chr7:3642814:3643351:-	0	-
#Deleted in new
chr7	3643465	3643784	ENSG00000236510.1|AC011284.1|lncRNA|chr7:3643465:3643784:-	0	-
#Deleted in new
chr7	36463022	36463128	ENSG00000237400.1|AC006960.2|lncRNA|chr7:36463022:36463128:+	0	+
#Deleted in new
chr7	36469173	36469266	ENSG00000237400.1|AC006960.2|lncRNA|chr7:36469173:36469266:+	0	+
#Deleted in new
chr7	36472285	36472431	ENSG00000237400.1|AC006960.2|lncRNA|chr7:36472285:36472431:+	0	+
#Deleted in new
chr7	36504327	36504513	ENSG00000237400.1|AC006960.2|lncRNA|chr7:36504327:36504513:+	0	+
#Deleted in new
chr7	36550094	36550256	ENSG00000136250.11|AOAH|pc|chr7:36550094:36550256:-	0	-
#Deleted in new
chr7	36661042	36661300	ENSG00000136250.11|AOAH|pc|chr7:36661042:36661300:-	0	-
#Deleted in new
chr7	36750686	36751046	ENSG00000229424.1|AC007349.1|lncRNA|chr7:36750686:36751046:+	0	+
#Deleted in new
chr7	36755708	36755838	ENSG00000229424.1|AC007349.1|lncRNA|chr7:36755708:36755838:+	0	+
#Deleted in new
chr7	36781007	36781153	ENSG00000235728.1|AC007349.3|lncRNA|chr7:36781007:36781153:+	0	+
#Deleted in new
chr7	37353031	37353668	ENSG00000155849.15|ELMO1|pc|chr7:37353031:37353668:-	0	-
#Deleted in new
chr7	37685459	37685583	ENSG00000187037.8|GPR141|pc|chr7:37685459:37685583:+	0	+
#Partially deleted in new
chr7	37709717	37709799	ENSG00000187037.8|GPR141|pc|chr7:37709717:37709799:+	0	+
#Deleted in new
chr7	379358	379543	ENSG00000249574.1|AC226118.1|lncRNA|chr7:379358:379543:+	0	+
#Deleted in new
chr7	380848	382712	ENSG00000249574.1|AC226118.1|lncRNA|chr7:380848:382712:+	0	+
#Deleted in new
chr7	38198210	38198365	ENSG00000010270.13|STARD3NL|pc|chr7:38198210:38198365:+	0	+
#Deleted in new
chr7	38201713	38201966	ENSG00000010270.13|STARD3NL|pc|chr7:38201713:38201966:+	0	+
#Partially deleted in new
chr7	38202069	38202197	ENSG00000010270.13|STARD3NL|pc|chr7:38202069:38202197:+	0	+
#Deleted in new
chr7	38326069	38327633	ENSG00000272908.1|AC006033.2|lncRNA|chr7:38326069:38327633:-	0	-
#Deleted in new
chr7	38329239	38329643	ENSG00000272908.1|AC006033.2|lncRNA|chr7:38329239:38329643:-	0	-
#Deleted in new
chr7	38342255	38342702	ENSG00000281103.1|TRG-AS1|lncRNA|chr7:38342255:38342702:+	0	+
#Deleted in new
chr7	38346020	38346127	ENSG00000281103.1|TRG-AS1|lncRNA|chr7:38346020:38346127:+	0	+
#Deleted in new
chr7	38350345	38350450	ENSG00000281103.1|TRG-AS1|lncRNA|chr7:38350345:38350450:+	0	+
#Partially deleted in new
chr7	38375556	38378804	ENSG00000281103.1|TRG-AS1|lncRNA|chr7:38375556:38378804:+	0	+
#Deleted in new
chr7	38392617	38392719	ENSG00000078053.16|AMPH|pc|chr7:38392617:38392719:-	0	-
#Deleted in new
chr7	39013080	39013559	ENSG00000106536.19|POU6F2|pc|chr7:39013080:39013559:+	0	+
#Deleted in new
chr7	39013456	39013551	ENSG00000233854.1|POU6F2-AS2|lncRNA|chr7:39013456:39013551:-	0	-
#Deleted in new
chr7	39471087	39471242	ENSG00000106536.19|POU6F2|pc|chr7:39471087:39471242:+	0	+
#Deleted in new
chr7	39490369	39490609	ENSG00000106536.19|POU6F2|pc|chr7:39490369:39490609:+	0	+
#Deleted in new
chr7	39700340	39700754	ENSG00000228554.1|AC004837.2|lncRNA|chr7:39700340:39700754:-	0	-
#Deleted in new
chr7	39700879	39701019	ENSG00000006451.7|RALA|pc|chr7:39700879:39701019:+	0	+
#Deleted in new
chr7	39702979	39703296	ENSG00000228554.1|AC004837.2|lncRNA|chr7:39702979:39703296:-	0	-
#Deleted in new
chr7	39733631	39734044	ENSG00000188185.11|LINC00265|lncRNA|chr7:39733631:39734044:+	0	+
#Deleted in new
chr7	39767403	39767670	ENSG00000188185.11|LINC00265|lncRNA|chr7:39767403:39767670:+	0	+
#Deleted in new
chr7	39771004	39771091	ENSG00000188185.11|LINC00265|lncRNA|chr7:39771004:39771091:+	0	+
#Deleted in new
chr7	39779270	39779385	ENSG00000188185.11|LINC00265|lncRNA|chr7:39779270:39779385:+	0	+
#Deleted in new
chr7	39780502	39780624	ENSG00000188185.11|LINC00265|lncRNA|chr7:39780502:39780624:+	0	+
#Deleted in new
chr7	39781234	39781351	ENSG00000188185.11|LINC00265|lncRNA|chr7:39781234:39781351:+	0	+
#Deleted in new
chr7	39781688	39781896	ENSG00000188185.11|LINC00265|lncRNA|chr7:39781688:39781896:+	0	+
#Deleted in new
chr7	39781743	39781885	ENSG00000188185.11|LINC00265|lncRNA|chr7:39781743:39781885:+	0	+
#Deleted in new
chr7	39782734	39782799	ENSG00000188185.11|LINC00265|lncRNA|chr7:39782734:39782799:+	0	+
#Deleted in new
chr7	39788481	39788604	ENSG00000188185.11|LINC00265|lncRNA|chr7:39788481:39788604:+	0	+
#Deleted in new
chr7	39789353	39789425	ENSG00000188185.11|LINC00265|lncRNA|chr7:39789353:39789425:+	0	+
#Deleted in new
chr7	39789353	39789544	ENSG00000188185.11|LINC00265|lncRNA|chr7:39789353:39789544:+	0	+
#Deleted in new
chr7	39791593	39791651	ENSG00000188185.11|LINC00265|lncRNA|chr7:39791593:39791651:+	0	+
#Deleted in new
chr7	39791743	39793092	ENSG00000188185.11|LINC00265|lncRNA|chr7:39791743:39793092:+	0	+
#Deleted in new
chr7	40069309	40069346	ENSG00000065883.14|CDK13|pc|chr7:40069309:40069346:+	0	+
#Deleted in new
chr7	40069309	40070088	ENSG00000065883.14|CDK13|pc|chr7:40069309:40070088:+	0	+
#Deleted in new
chr7	40141823	40141873	ENSG00000175600.15|SUGCT|pc|chr7:40141823:40141873:+	0	+
#Deleted in new
chr7	40684055	40684133	ENSG00000175600.15|SUGCT|pc|chr7:40684055:40684133:+	0	+
#Deleted in new
chr7	40782588	40782712	ENSG00000227658.1|AC005160.1|lncRNA|chr7:40782588:40782712:+	0	+
#Deleted in new
chr7	40968114	40968184	ENSG00000232458.1|LINC01450|lncRNA|chr7:40968114:40968184:-	0	-
#Deleted in new
chr7	41118966	41119283	ENSG00000224017.1|LINC01449|lncRNA|chr7:41118966:41119283:+	0	+
#Deleted in new
chr7	4134750	4134837	ENSG00000283991.1|AC017000.1|lncRNA|chr7:4134750:4134837:-	0	-
#Partially deleted in new
chr7	41667878	41668074	ENSG00000122641.10|INHBA|pc|chr7:41667878:41668074:-	0	-
#Deleted in new
chr7	41772895	41772994	ENSG00000224116.6|INHBA-AS1|lncRNA|chr7:41772895:41772994:+	0	+
#Deleted in new
chr7	41776840	41779388	ENSG00000224116.6|INHBA-AS1|lncRNA|chr7:41776840:41779388:+	0	+
#Deleted in new
chr7	4179123	4179258	ENSG00000146555.18|SDK1|pc|chr7:4179123:4179258:+	0	+
#Deleted in new
chr7	42661725	42662492	ENSG00000238284.1|LINC01448|lncRNA|chr7:42661725:42662492:-	0	-
#Deleted in new
chr7	42706230	42706447	ENSG00000238284.1|LINC01448|lncRNA|chr7:42706230:42706447:-	0	-
#Deleted in new
chr7	42829671	42830090	ENSG00000231539.1|AC010132.1|lncRNA|chr7:42829671:42830090:-	0	-
#Deleted in new
chr7	42844296	42844438	ENSG00000231539.1|AC010132.1|lncRNA|chr7:42844296:42844438:-	0	-
#Deleted in new
chr7	42901271	42902639	ENSG00000261019.1|AC010132.4|lncRNA|chr7:42901271:42902639:-	0	-
#Partially deleted in new
chr7	42934954	42937241	ENSG00000106591.3|MRPL32|pc|chr7:42934954:42937241:+	0	+
#Deleted in new
chr7	42948564	42948958	ENSG00000106591.3|MRPL32|pc|chr7:42948564:42948958:+	0	+
#Deleted in new
chr7	42954134	42954485	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42954134:42954485:-	0	-
#Deleted in new
chr7	42955376	42955457	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42955376:42955457:-	0	-
#Deleted in new
chr7	42955954	42956132	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42955954:42956132:-	0	-
#Deleted in new
chr7	42956021	42956132	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42956021:42956132:-	0	-
#Deleted in new
chr7	42959928	42959990	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42959928:42959990:-	0	-
#Deleted in new
chr7	42961338	42961528	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42961338:42961528:-	0	-
#Deleted in new
chr7	42962967	42963343	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42962967:42963343:-	0	-
#Deleted in new
chr7	42971540	42972848	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42971540:42972848:-	0	-
#Deleted in new
chr7	42972623	42972848	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42972623:42972848:-	0	-
#Deleted in new
chr7	42972625	42972848	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42972625:42972848:-	0	-
#Deleted in new
chr7	42972678	42972848	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42972678:42972848:-	0	-
#Deleted in new
chr7	42972680	42972848	ENSG00000232006.8|AC005537.1|lncRNA|chr7:42972680:42972848:-	0	-
#Deleted in new
chr7	43028337	43028395	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43028337:43028395:-	0	-
#Deleted in new
chr7	43037484	43037598	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43037484:43037598:-	0	-
#Deleted in new
chr7	43047581	43048062	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43047581:43048062:-	0	-
#Deleted in new
chr7	43059094	43059508	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43059094:43059508:-	0	-
#Deleted in new
chr7	43059094	43059550	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43059094:43059550:-	0	-
#Deleted in new
chr7	43059353	43059542	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43059353:43059542:-	0	-
#Deleted in new
chr7	43070690	43070754	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43070690:43070754:-	0	-
#Deleted in new
chr7	43071853	43071988	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43071853:43071988:-	0	-
#Deleted in new
chr7	43073283	43073404	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43073283:43073404:-	0	-
#Deleted in new
chr7	43075021	43075063	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43075021:43075063:-	0	-
#Deleted in new
chr7	43076278	43076310	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43076278:43076310:-	0	-
#Deleted in new
chr7	43076278	43076348	ENSG00000232006.8|AC005537.1|lncRNA|chr7:43076278:43076348:-	0	-
#Deleted in new
chr7	43118946	43119195	ENSG00000181211.1|HECW1-IT1|lncRNA|chr7:43118946:43119195:+	0	+
#Deleted in new
chr7	43121802	43122019	ENSG00000181211.1|HECW1-IT1|lncRNA|chr7:43121802:43122019:+	0	+
#Deleted in new
chr7	43147447	43147585	ENSG00000181211.1|HECW1-IT1|lncRNA|chr7:43147447:43147585:+	0	+
#Deleted in new
chr7	43148640	43148827	ENSG00000181211.1|HECW1-IT1|lncRNA|chr7:43148640:43148827:+	0	+
#Deleted in new
chr7	43161609	43161715	ENSG00000181211.1|HECW1-IT1|lncRNA|chr7:43161609:43161715:+	0	+
#Deleted in new
chr7	43162925	43163187	ENSG00000181211.1|HECW1-IT1|lncRNA|chr7:43162925:43163187:+	0	+
#Deleted in new
chr7	43239065	43239225	ENSG00000228680.1|AC004692.2|lncRNA|chr7:43239065:43239225:-	0	-
#Deleted in new
chr7	43245362	43245799	ENSG00000228680.1|AC004692.2|lncRNA|chr7:43245362:43245799:-	0	-
#Deleted in new
chr7	43248586	43248647	ENSG00000002746.14|HECW1|pc|chr7:43248586:43248647:+	0	+
#Deleted in new
chr7	43258534	43258709	ENSG00000002746.14|HECW1|pc|chr7:43258534:43258709:+	0	+
#Deleted in new
chr7	43258534	43258740	ENSG00000002746.14|HECW1|pc|chr7:43258534:43258740:+	0	+
#Deleted in new
chr7	43377777	43377943	ENSG00000002746.14|HECW1|pc|chr7:43377777:43377943:+	0	+
#Deleted in new
chr7	43396672	43396719	ENSG00000002746.14|HECW1|pc|chr7:43396672:43396719:+	0	+
#Deleted in new
chr7	43484143	43484615	ENSG00000002746.14|HECW1|pc|chr7:43484143:43484615:+	0	+
#Deleted in new
chr7	43510982	43512123	ENSG00000231638.1|LUARIS|lncRNA|chr7:43510982:43512123:-	0	-
#Deleted in new
chr7	43522287	43522542	ENSG00000231638.1|LUARIS|lncRNA|chr7:43522287:43522542:-	0	-
#Deleted in new
chr7	43523048	43523146	ENSG00000002746.14|HECW1|pc|chr7:43523048:43523146:+	0	+
#Deleted in new
chr7	43582757	43582961	ENSG00000164543.5|STK17A|pc|chr7:43582757:43582961:+	0	+
#Deleted in new
chr7	43583064	43583449	ENSG00000164543.5|STK17A|pc|chr7:43583064:43583449:+	0	+
#Deleted in new
chr7	43608455	43609495	ENSG00000106603.18|COA1|pc|chr7:43608455:43609495:-	0	-
#Deleted in new
chr7	43608818	43609641	ENSG00000106603.18|COA1|pc|chr7:43608818:43609641:-	0	-
#Deleted in new
chr7	43609232	43609641	ENSG00000106603.18|COA1|pc|chr7:43609232:43609641:-	0	-
#Partially deleted in new
chr7	43622288	43623888	ENSG00000164543.5|STK17A|pc|chr7:43622288:43623888:+	0	+
#Deleted in new
chr7	43624517	43625184	ENSG00000164543.5|STK17A|pc|chr7:43624517:43625184:+	0	+
#Deleted in new
chr7	43624517	43626786	ENSG00000164543.5|STK17A|pc|chr7:43624517:43626786:+	0	+
#Deleted in new
chr7	43631151	43633408	ENSG00000106603.18|COA1|pc|chr7:43631151:43633408:-	0	-
#Deleted in new
chr7	43638798	43639681	ENSG00000106603.18|COA1|pc|chr7:43638798:43639681:-	0	-
#Deleted in new
chr7	43639246	43639681	ENSG00000106603.18|COA1|pc|chr7:43639246:43639681:-	0	-
#Deleted in new
chr7	43639256	43639681	ENSG00000106603.18|COA1|pc|chr7:43639256:43639681:-	0	-
#Deleted in new
chr7	43639448	43639681	ENSG00000106603.18|COA1|pc|chr7:43639448:43639681:-	0	-
#Deleted in new
chr7	43640572	43640649	ENSG00000106603.18|COA1|pc|chr7:43640572:43640649:-	0	-
#Deleted in new
chr7	43640572	43641069	ENSG00000106603.18|COA1|pc|chr7:43640572:43641069:-	0	-
#Deleted in new
chr7	43641445	43642164	ENSG00000106603.18|COA1|pc|chr7:43641445:43642164:-	0	-
#Deleted in new
chr7	43645250	43645399	ENSG00000106603.18|COA1|pc|chr7:43645250:43645399:-	0	-
#Deleted in new
chr7	43645250	43646425	ENSG00000106603.18|COA1|pc|chr7:43645250:43646425:-	0	-
#Deleted in new
chr7	43646296	43646581	ENSG00000106603.18|COA1|pc|chr7:43646296:43646581:-	0	-
#Deleted in new
chr7	43646471	43647634	ENSG00000106603.18|COA1|pc|chr7:43646471:43647634:-	0	-
#Deleted in new
chr7	43647215	43647634	ENSG00000106603.18|COA1|pc|chr7:43647215:43647634:-	0	-
#Deleted in new
chr7	43647227	43648652	ENSG00000106603.18|COA1|pc|chr7:43647227:43648652:-	0	-
#Deleted in new
chr7	43647274	43647634	ENSG00000106603.18|COA1|pc|chr7:43647274:43647634:-	0	-
#Deleted in new
chr7	43647350	43647634	ENSG00000106603.18|COA1|pc|chr7:43647350:43647634:-	0	-
#Deleted in new
chr7	43647457	43647634	ENSG00000106603.18|COA1|pc|chr7:43647457:43647634:-	0	-
#Deleted in new
chr7	43647534	43647634	ENSG00000106603.18|COA1|pc|chr7:43647534:43647634:-	0	-
#Deleted in new
chr7	43648187	43648652	ENSG00000106603.18|COA1|pc|chr7:43648187:43648652:-	0	-
#Deleted in new
chr7	43648599	43648614	ENSG00000106603.18|COA1|pc|chr7:43648599:43648614:-	0	-
#Deleted in new
chr7	43648599	43648652	ENSG00000106603.18|COA1|pc|chr7:43648599:43648652:-	0	-
#Deleted in new
chr7	43648599	43648754	ENSG00000106603.18|COA1|pc|chr7:43648599:43648754:-	0	-
#Deleted in new
chr7	43648599	43650296	ENSG00000106603.18|COA1|pc|chr7:43648599:43650296:-	0	-
#Deleted in new
chr7	43650492	43650712	ENSG00000106603.18|COA1|pc|chr7:43650492:43650712:-	0	-
#Deleted in new
chr7	43650611	43650712	ENSG00000106603.18|COA1|pc|chr7:43650611:43650712:-	0	-
#Deleted in new
chr7	43656032	43656153	ENSG00000106603.18|COA1|pc|chr7:43656032:43656153:-	0	-
#Deleted in new
chr7	43657215	43657269	ENSG00000106603.18|COA1|pc|chr7:43657215:43657269:-	0	-
#Deleted in new
chr7	43657221	43657269	ENSG00000106603.18|COA1|pc|chr7:43657221:43657269:-	0	-
#Deleted in new
chr7	43658711	43659144	ENSG00000106603.18|COA1|pc|chr7:43658711:43659144:-	0	-
#Deleted in new
chr7	43665657	43665722	ENSG00000106603.18|COA1|pc|chr7:43665657:43665722:-	0	-
#Deleted in new
chr7	43711399	43711449	ENSG00000106603.18|COA1|pc|chr7:43711399:43711449:-	0	-
#Deleted in new
chr7	43729428	43729474	ENSG00000106603.18|COA1|pc|chr7:43729428:43729474:-	0	-
#Deleted in new
chr7	43729428	43729483	ENSG00000106603.18|COA1|pc|chr7:43729428:43729483:-	0	-
#Deleted in new
chr7	43729428	43729489	ENSG00000106603.18|COA1|pc|chr7:43729428:43729489:-	0	-
#Deleted in new
chr7	43729428	43729497	ENSG00000106603.18|COA1|pc|chr7:43729428:43729497:-	0	-
#Deleted in new
chr7	43729428	43729499	ENSG00000106603.18|COA1|pc|chr7:43729428:43729499:-	0	-
#Deleted in new
chr7	43729428	43729501	ENSG00000106603.18|COA1|pc|chr7:43729428:43729501:-	0	-
#Deleted in new
chr7	43729428	43729505	ENSG00000106603.18|COA1|pc|chr7:43729428:43729505:-	0	-
#Deleted in new
chr7	43729428	43729510	ENSG00000106603.18|COA1|pc|chr7:43729428:43729510:-	0	-
#Deleted in new
chr7	43729428	43729513	ENSG00000106603.18|COA1|pc|chr7:43729428:43729513:-	0	-
#Deleted in new
chr7	43729428	43729523	ENSG00000106603.18|COA1|pc|chr7:43729428:43729523:-	0	-
#Deleted in new
chr7	43729428	43729541	ENSG00000106603.18|COA1|pc|chr7:43729428:43729541:-	0	-
#Deleted in new
chr7	43729428	43729717	ENSG00000106603.18|COA1|pc|chr7:43729428:43729717:-	0	-
#Deleted in new
chr7	43758679	43758734	ENSG00000106605.10|BLVRA|pc|chr7:43758679:43758734:+	0	+
#Deleted in new
chr7	43758686	43758734	ENSG00000106605.10|BLVRA|pc|chr7:43758686:43758734:+	0	+
#Deleted in new
chr7	43760016	43760110	ENSG00000106605.10|BLVRA|pc|chr7:43760016:43760110:+	0	+
#Deleted in new
chr7	43764190	43764305	ENSG00000106605.10|BLVRA|pc|chr7:43764190:43764305:+	0	+
#Deleted in new
chr7	43771134	43771170	ENSG00000106605.10|BLVRA|pc|chr7:43771134:43771170:+	0	+
#Deleted in new
chr7	43771137	43771170	ENSG00000106605.10|BLVRA|pc|chr7:43771137:43771170:+	0	+
#Partially deleted in new
chr7	43867547	43869074	ENSG00000062582.13|MRPS24|pc|chr7:43867547:43869074:-	0	-
#Deleted in new
chr7	43879667	43879786	ENSG00000106608.16|URGCP|pc|chr7:43879667:43879786:-	0	-
#Deleted in new
chr7	43910730	43910852	ENSG00000106608.16|URGCP|pc|chr7:43910730:43910852:-	0	-
#Deleted in new
chr7	43928013	43928111	ENSG00000078967.12|UBE2D4|pc|chr7:43928013:43928111:+	0	+
#Partially deleted in new
chr7	43940894	43944948	ENSG00000214783.9|POLR2J4|lncRNA|chr7:43940894:43944948:-	0	-
#Deleted in new
chr7	43946133	43946324	ENSG00000214783.9|POLR2J4|lncRNA|chr7:43946133:43946324:-	0	-
#Deleted in new
chr7	43947158	43947229	ENSG00000078967.12|UBE2D4|pc|chr7:43947158:43947229:+	0	+
#Deleted in new
chr7	44013592	44013679	ENSG00000214783.9|POLR2J4|lncRNA|chr7:44013592:44013679:-	0	-
#Deleted in new
chr7	44013592	44013679	ENSG00000273432.1|AC004951.4|lncRNA|chr7:44013592:44013679:-	0	-
#Partially deleted in new
chr7	44039170	44039283	ENSG00000235314.1|LINC00957|lncRNA|chr7:44039170:44039283:+	0	+
#Deleted in new
chr7	44065981	44066079	ENSG00000239775.1|AC017116.1|lncRNA|chr7:44065981:44066079:+	0	+
#Deleted in new
chr7	44065985	44066079	ENSG00000239775.1|AC017116.1|lncRNA|chr7:44065985:44066079:+	0	+
#Deleted in new
chr7	44078321	44078438	ENSG00000122678.16|POLM|pc|chr7:44078321:44078438:-	0	-
#Deleted in new
chr7	44124309	44124358	ENSG00000106628.10|POLD2|pc|chr7:44124309:44124358:-	0	-
#Partially deleted in new
chr7	44146073	44146144	ENSG00000106633.15|GCK|pc|chr7:44146073:44146144:-	0	-
#Deleted in new
chr7	44197690	44198170	ENSG00000106633.15|GCK|pc|chr7:44197690:44198170:-	0	-
#Partially deleted in new
chr7	44208406	44208707	ENSG00000106636.7|YKT6|pc|chr7:44208406:44208707:+	0	+
#Deleted in new
chr7	44263940	44264005	ENSG00000058404.19|CAMK2B|pc|chr7:44263940:44264005:-	0	-
#Deleted in new
chr7	44266902	44267075	ENSG00000058404.19|CAMK2B|pc|chr7:44266902:44267075:-	0	-
#Partially deleted in new
chr7	44323810	44323962	ENSG00000058404.19|CAMK2B|pc|chr7:44323810:44323962:-	0	-
#Deleted in new
chr7	44367139	44369292	ENSG00000279853.1|AC004453.2|lncRNA|chr7:44367139:44369292:-	0	-
#Deleted in new
chr7	44413190	44413283	ENSG00000015676.17|NUDCD3|pc|chr7:44413190:44413283:-	0	-
#Deleted in new
chr7	44425899	44425950	ENSG00000015676.17|NUDCD3|pc|chr7:44425899:44425950:-	0	-
#Partially deleted in new
chr7	44425909	44426153	ENSG00000015676.17|NUDCD3|pc|chr7:44425909:44426153:-	0	-
#Deleted in new
chr7	44481291	44481462	ENSG00000015676.17|NUDCD3|pc|chr7:44481291:44481462:-	0	-
#Deleted in new
chr7	44484443	44484624	ENSG00000015676.17|NUDCD3|pc|chr7:44484443:44484624:-	0	-
#Deleted in new
chr7	44518585	44518666	ENSG00000015520.14|NPC1L1|pc|chr7:44518585:44518666:-	0	-
#Partially deleted in new
chr7	44573835	44575051	ENSG00000136271.10|DDX56|pc|chr7:44573835:44575051:-	0	-
#Deleted in new
chr7	44622805	44622875	ENSG00000105953.14|OGDH|pc|chr7:44622805:44622875:+	0	+
#Deleted in new
chr7	44763688	44763750	ENSG00000122515.14|ZMIZ2|pc|chr7:44763688:44763750:+	0	+
#Deleted in new
chr7	44785049	44785254	ENSG00000228596.1|AC013436.1|lncRNA|chr7:44785049:44785254:-	0	-
#Deleted in new
chr7	44787123	44787340	ENSG00000228596.1|AC013436.1|lncRNA|chr7:44787123:44787340:-	0	-
#Deleted in new
chr7	44800423	44800543	ENSG00000196262.13|PPIA|pc|chr7:44800423:44800543:+	0	+
#Partially deleted in new
chr7	44801286	44803117	ENSG00000196262.13|PPIA|pc|chr7:44801286:44803117:+	0	+
#Deleted in new
chr7	44821993	44822058	ENSG00000196262.13|PPIA|pc|chr7:44821993:44822058:+	0	+
#Deleted in new
chr7	44823139	44823375	ENSG00000196262.13|PPIA|pc|chr7:44823139:44823375:+	0	+
#Deleted in new
chr7	44826790	44830163	ENSG00000105968.18|H2AFV|pc|chr7:44826790:44830163:-	0	-
#Deleted in new
chr7	44829896	44830163	ENSG00000105968.18|H2AFV|pc|chr7:44829896:44830163:-	0	-
#Deleted in new
chr7	44849058	44849232	ENSG00000234183.1|LINC01952|lncRNA|chr7:44849058:44849232:+	0	+
#Partially deleted in new
chr7	44958998	44960909	ENSG00000260997.1|AC004847.1|lncRNA|chr7:44958998:44960909:-	0	-
#Partially deleted in new
chr7	44968522	44969483	ENSG00000136286.14|MYO1G|pc|chr7:44968522:44969483:-	0	-
#Partially deleted in new
chr7	44972114	44975106	ENSG00000136286.14|MYO1G|pc|chr7:44972114:44975106:-	0	-
#Partially deleted in new
chr7	44972114	44975227	ENSG00000136286.14|MYO1G|pc|chr7:44972114:44975227:-	0	-
#Partially deleted in new
chr7	44983022	44983322	ENSG00000232956.8|SNHG15|lncRNA|chr7:44983022:44983322:-	0	-
#Partially deleted in new
chr7	44983025	44983322	ENSG00000232956.8|SNHG15|lncRNA|chr7:44983025:44983322:-	0	-
#Partially deleted in new
chr7	44983033	44983322	ENSG00000232956.8|SNHG15|lncRNA|chr7:44983033:44983322:-	0	-
#Partially deleted in new
chr7	44983084	44983322	ENSG00000232956.8|SNHG15|lncRNA|chr7:44983084:44983322:-	0	-
#Partially deleted in new
chr7	44983136	44983322	ENSG00000232956.8|SNHG15|lncRNA|chr7:44983136:44983322:-	0	-
#Partially deleted in new
chr7	44983614	44984426	ENSG00000232956.8|SNHG15|lncRNA|chr7:44983614:44984426:-	0	-
#Partially deleted in new
chr7	44983821	44986637	ENSG00000232956.8|SNHG15|lncRNA|chr7:44983821:44986637:-	0	-
#Deleted in new
chr7	44984356	44984426	ENSG00000232956.8|SNHG15|lncRNA|chr7:44984356:44984426:-	0	-
#Partially deleted in new
chr7	44985461	44986097	ENSG00000232956.8|SNHG15|lncRNA|chr7:44985461:44986097:-	0	-
#Deleted in new
chr7	44985881	44986097	ENSG00000232956.8|SNHG15|lncRNA|chr7:44985881:44986097:-	0	-
#Deleted in new
chr7	44986020	44986097	ENSG00000232956.8|SNHG15|lncRNA|chr7:44986020:44986097:-	0	-
#Deleted in new
chr7	44986524	44986560	ENSG00000232956.8|SNHG15|lncRNA|chr7:44986524:44986560:-	0	-
#Deleted in new
chr7	44986524	44986570	ENSG00000232956.8|SNHG15|lncRNA|chr7:44986524:44986570:-	0	-
#Deleted in new
chr7	44986524	44986650	ENSG00000232956.8|SNHG15|lncRNA|chr7:44986524:44986650:-	0	-
#Deleted in new
chr7	44986524	44986656	ENSG00000232956.8|SNHG15|lncRNA|chr7:44986524:44986656:-	0	-
#Deleted in new
chr7	44986524	44986668	ENSG00000232956.8|SNHG15|lncRNA|chr7:44986524:44986668:-	0	-
#Deleted in new
chr7	44986524	44986669	ENSG00000232956.8|SNHG15|lncRNA|chr7:44986524:44986669:-	0	-
#Deleted in new
chr7	44986524	44986674	ENSG00000232956.8|SNHG15|lncRNA|chr7:44986524:44986674:-	0	-
#Deleted in new
chr7	44986524	44986834	ENSG00000232956.8|SNHG15|lncRNA|chr7:44986524:44986834:-	0	-
#Deleted in new
chr7	44986524	44986961	ENSG00000232956.8|SNHG15|lncRNA|chr7:44986524:44986961:-	0	-
#Deleted in new
chr7	45063092	45063215	ENSG00000136280.15|CCM2|pc|chr7:45063092:45063215:+	0	+
#Partially deleted in new
chr7	45069825	45074408	ENSG00000136280.15|CCM2|pc|chr7:45069825:45074408:+	0	+
#Deleted in new
chr7	45070388	45070557	ENSG00000136280.15|CCM2|pc|chr7:45070388:45070557:+	0	+
#Deleted in new
chr7	45070388	45071180	ENSG00000136280.15|CCM2|pc|chr7:45070388:45071180:+	0	+
#Deleted in new
chr7	45071749	45071872	ENSG00000136280.15|CCM2|pc|chr7:45071749:45071872:+	0	+
#Partially deleted in new
chr7	45072337	45072783	ENSG00000136280.15|CCM2|pc|chr7:45072337:45072783:+	0	+
#Split in new
chr7	45105440	45107464	ENSG00000136270.13|TBRG4|pc|chr7:45105440:45107464:-	0	-
#Deleted in new
chr7	45186198	45186298	ENSG00000122679.8|RAMP3|pc|chr7:45186198:45186298:+	0	+
#Deleted in new
chr7	45186198	45186302	ENSG00000122679.8|RAMP3|pc|chr7:45186198:45186302:+	0	+
#Deleted in new
chr7	45529436	45529536	ENSG00000225537.1|AC073325.1|lncRNA|chr7:45529436:45529536:+	0	+
#Deleted in new
chr7	45664288	45664671	ENSG00000164742.14|ADCY1|pc|chr7:45664288:45664671:+	0	+
#Deleted in new
chr7	45664288	45664672	ENSG00000164742.14|ADCY1|pc|chr7:45664288:45664672:+	0	+
#Deleted in new
chr7	45979908	45980191	ENSG00000237471.1|AC073115.2|lncRNA|chr7:45979908:45980191:+	0	+
#Deleted in new
chr7	45990904	45991077	ENSG00000229628.1|AC073115.1|lncRNA|chr7:45990904:45991077:+	0	+
#Deleted in new
chr7	46277471	46277516	ENSG00000229459.1|AC023669.1|lncRNA|chr7:46277471:46277516:+	0	+
#Deleted in new
chr7	46294216	46294469	ENSG00000229459.1|AC023669.1|lncRNA|chr7:46294216:46294469:+	0	+
#Deleted in new
chr7	46302119	46302168	ENSG00000237760.1|AC023669.2|lncRNA|chr7:46302119:46302168:+	0	+
#Deleted in new
chr7	46477821	46477943	ENSG00000230680.2|AC004869.1|lncRNA|chr7:46477821:46477943:-	0	-
#Deleted in new
chr7	46477842	46477940	ENSG00000240355.1|AC004869.2|lncRNA|chr7:46477842:46477940:-	0	-
#Partially deleted in new
chr7	46479610	46479695	ENSG00000230680.2|AC004869.1|lncRNA|chr7:46479610:46479695:-	0	-
#Deleted in new
chr7	46481245	46481578	ENSG00000230680.2|AC004869.1|lncRNA|chr7:46481245:46481578:-	0	-
#Deleted in new
chr7	46676074	46676133	ENSG00000233539.5|AC011294.1|lncRNA|chr7:46676074:46676133:-	0	-
#Deleted in new
chr7	46677794	46677899	ENSG00000233539.5|AC011294.1|lncRNA|chr7:46677794:46677899:-	0	-
#Deleted in new
chr7	46678672	46678775	ENSG00000233539.5|AC011294.1|lncRNA|chr7:46678672:46678775:-	0	-
#Partially deleted in new
chr7	46687878	46689546	ENSG00000233539.5|AC011294.1|lncRNA|chr7:46687878:46689546:-	0	-
#Partially deleted in new
chr7	46688939	46689546	ENSG00000233539.5|AC011294.1|lncRNA|chr7:46688939:46689546:-	0	-
#Deleted in new
chr7	46692810	46692969	ENSG00000233539.5|AC011294.1|lncRNA|chr7:46692810:46692969:-	0	-
#Deleted in new
chr7	46697002	46697122	ENSG00000233539.5|AC011294.1|lncRNA|chr7:46697002:46697122:-	0	-
#Deleted in new
chr7	46890624	46890780	ENSG00000232072.1|AC004870.4|lncRNA|chr7:46890624:46890780:-	0	-
#Deleted in new
chr7	46890626	46890780	ENSG00000232072.1|AC004870.4|lncRNA|chr7:46890626:46890780:-	0	-
#Deleted in new
chr7	46937433	46937497	ENSG00000232072.1|AC004870.4|lncRNA|chr7:46937433:46937497:-	0	-
#Deleted in new
chr7	46969701	46969913	ENSG00000223829.5|AC004870.2|lncRNA|chr7:46969701:46969913:+	0	+
#Deleted in new
chr7	46969715	46969913	ENSG00000223829.5|AC004870.2|lncRNA|chr7:46969715:46969913:+	0	+
#Deleted in new
chr7	46969720	46969913	ENSG00000223829.5|AC004870.2|lncRNA|chr7:46969720:46969913:+	0	+
#Deleted in new
chr7	46972276	46972385	ENSG00000223829.5|AC004870.2|lncRNA|chr7:46972276:46972385:+	0	+
#Deleted in new
chr7	46972276	46972692	ENSG00000223829.5|AC004870.2|lncRNA|chr7:46972276:46972692:+	0	+
#Deleted in new
chr7	47027192	47027481	ENSG00000223829.5|AC004870.2|lncRNA|chr7:47027192:47027481:+	0	+
#Deleted in new
chr7	47049441	47049678	ENSG00000232072.1|AC004870.4|lncRNA|chr7:47049441:47049678:-	0	-
#Deleted in new
chr7	47079076	47079113	ENSG00000229192.6|AC004870.3|lncRNA|chr7:47079076:47079113:-	0	-
#Deleted in new
chr7	47079076	47079128	ENSG00000229192.6|AC004870.3|lncRNA|chr7:47079076:47079128:-	0	-
#Deleted in new
chr7	47452932	47453231	ENSG00000136205.16|TNS3|pc|chr7:47452932:47453231:-	0	-
#Partially deleted in new
chr7	4754458	4755051	ENSG00000164916.10|FOXK1|pc|chr7:4754458:4755051:+	0	+
#Partially deleted in new
chr7	4758008	4759217	ENSG00000164916.10|FOXK1|pc|chr7:4758008:4759217:+	0	+
#Deleted in new
chr7	47621938	47622337	ENSG00000236078.1|LINC01447|lncRNA|chr7:47621938:47622337:+	0	+
#Deleted in new
chr7	47627260	47627802	ENSG00000236078.1|LINC01447|lncRNA|chr7:47627260:47627802:+	0	+
#Deleted in new
chr7	47628696	47629893	ENSG00000236078.1|LINC01447|lncRNA|chr7:47628696:47629893:+	0	+
#Deleted in new
chr7	47658692	47658756	ENSG00000221845.4|C7orf65|lncRNA|chr7:47658692:47658756:+	0	+
#Partially deleted in new
chr7	47658906	47661648	ENSG00000221845.4|C7orf65|lncRNA|chr7:47658906:47661648:+	0	+
#Deleted in new
chr7	47695729	47695775	ENSG00000136273.11|HUS1|pc|chr7:47695729:47695775:-	0	-
#Deleted in new
chr7	47761475	47761513	ENSG00000146666.5|LINC00525|lncRNA|chr7:47761475:47761513:+	0	+
#Deleted in new
chr7	47765828	47766772	ENSG00000146666.5|LINC00525|lncRNA|chr7:47765828:47766772:+	0	+
#Deleted in new
chr7	47795290	47795443	ENSG00000136275.10|C7orf69|lncRNA|chr7:47795290:47795443:+	0	+
#Deleted in new
chr7	47795423	47795443	ENSG00000136275.10|C7orf69|lncRNA|chr7:47795423:47795443:+	0	+
#Split in new
chr7	4791114	4794312	ENSG00000242802.6|AP5Z1|pc|chr7:4791114:4794312:+	0	+
#Deleted in new
chr7	47915431	47915599	ENSG00000158683.7|PKD1L1|pc|chr7:47915431:47915599:-	0	-
#Deleted in new
chr7	47943395	47943511	ENSG00000158683.7|PKD1L1|pc|chr7:47943395:47943511:-	0	-
#Deleted in new
chr7	47964319	47964632	ENSG00000136273.11|HUS1|pc|chr7:47964319:47964632:-	0	-
#Split in new
chr7	4797054	4799483	ENSG00000157927.16|RADIL|pc|chr7:4797054:4799483:-	0	-
#Deleted in new
chr7	47971259	47971516	ENSG00000136273.11|HUS1|pc|chr7:47971259:47971516:-	0	-
#Deleted in new
chr7	47991009	47991045	ENSG00000164744.12|SUN3|pc|chr7:47991009:47991045:-	0	-
#Deleted in new
chr7	48000127	48000181	ENSG00000164744.12|SUN3|pc|chr7:48000127:48000181:-	0	-
#Deleted in new
chr7	48018498	48018596	ENSG00000164744.12|SUN3|pc|chr7:48018498:48018596:-	0	-
#Deleted in new
chr7	48054594	48054606	ENSG00000164746.13|C7orf57|pc|chr7:48054594:48054606:+	0	+
#Partially deleted in new
chr7	48104645	48107082	ENSG00000183696.13|UPP1|pc|chr7:48104645:48107082:+	0	+
#Deleted in new
chr7	48603713	48603871	ENSG00000179869.14|ABCA13|pc|chr7:48603713:48603871:+	0	+
#Deleted in new
chr7	48611925	48612201	ENSG00000179869.14|ABCA13|pc|chr7:48611925:48612201:+	0	+
#Deleted in new
chr7	48663253	48663305	ENSG00000228173.1|AC091770.1|lncRNA|chr7:48663253:48663305:-	0	-
#Deleted in new
chr7	49230136	49230334	ENSG00000234686.1|AC091730.1|lncRNA|chr7:49230136:49230334:+	0	+
#Deleted in new
chr7	49253187	49253331	ENSG00000234686.1|AC091730.1|lncRNA|chr7:49253187:49253331:+	0	+
#Deleted in new
chr7	49253760	49253960	ENSG00000234686.1|AC091730.1|lncRNA|chr7:49253760:49253960:+	0	+
#Deleted in new
chr7	49254666	49254816	ENSG00000234686.1|AC091730.1|lncRNA|chr7:49254666:49254816:+	0	+
#Deleted in new
chr7	494843	494956	ENSG00000234471.1|AC147651.2|lncRNA|chr7:494843:494956:-	0	-
#Deleted in new
chr7	495904	496118	ENSG00000234471.1|AC147651.2|lncRNA|chr7:495904:496118:-	0	-
#Deleted in new
chr7	49901117	49901215	ENSG00000042813.7|ZPBP|pc|chr7:49901117:49901215:-	0	-
#Partially deleted in new
chr7	49935750	49936161	ENSG00000042813.7|ZPBP|pc|chr7:49935750:49936161:-	0	-
#Deleted in new
chr7	50121303	50121329	ENSG00000042813.7|ZPBP|pc|chr7:50121303:50121329:-	0	-
#Deleted in new
chr7	50203900	50204066	ENSG00000231681.2|AC020743.2|lncRNA|chr7:50203900:50204066:-	0	-
#Deleted in new
chr7	50259286	50259337	ENSG00000231681.2|AC020743.2|lncRNA|chr7:50259286:50259337:-	0	-
#Split in new
chr7	50327637	50328948	ENSG00000185811.17|IKZF1|pc|chr7:50327637:50328948:+	0	+
#Deleted in new
chr7	50447967	50448055	ENSG00000132436.11|FIGNL1|pc|chr7:50447967:50448055:-	0	-
#Deleted in new
chr7	50450026	50450090	ENSG00000132436.11|FIGNL1|pc|chr7:50450026:50450090:-	0	-
#Deleted in new
chr7	50459639	50459684	ENSG00000132437.17|DDC|pc|chr7:50459639:50459684:-	0	-
#Deleted in new
chr7	5046254	5046396	ENSG00000146587.17|RBAK|pc|chr7:5046254:5046396:+	0	+
#Deleted in new
chr7	50492646	50493005	ENSG00000132437.17|DDC|pc|chr7:50492646:50493005:-	0	-
#Deleted in new
chr7	50527691	50527849	ENSG00000132437.17|DDC|pc|chr7:50527691:50527849:-	0	-
#Partially deleted in new
chr7	50531758	50531882	ENSG00000226122.1|DDC-AS1|lncRNA|chr7:50531758:50531882:+	0	+
#Deleted in new
chr7	50541345	50541409	ENSG00000226122.1|DDC-AS1|lncRNA|chr7:50541345:50541409:+	0	+
#Deleted in new
chr7	50563994	50564334	ENSG00000132437.17|DDC|pc|chr7:50563994:50564334:-	0	-
#Partially deleted in new
chr7	50606336	50607068	ENSG00000106070.17|GRB10|pc|chr7:50606336:50607068:-	0	-
#Deleted in new
chr7	50705139	50705301	ENSG00000106070.17|GRB10|pc|chr7:50705139:50705301:-	0	-
#Deleted in new
chr7	50705139	50705323	ENSG00000106070.17|GRB10|pc|chr7:50705139:50705323:-	0	-
#Deleted in new
chr7	50710874	50710990	ENSG00000106070.17|GRB10|pc|chr7:50710874:50710990:-	0	-
#Deleted in new
chr7	50726012	50726035	ENSG00000106070.17|GRB10|pc|chr7:50726012:50726035:-	0	-
#Deleted in new
chr7	50726911	50727118	ENSG00000106070.17|GRB10|pc|chr7:50726911:50727118:-	0	-
#Deleted in new
chr7	50727792	50727890	ENSG00000106070.17|GRB10|pc|chr7:50727792:50727890:-	0	-
#Deleted in new
chr7	50729299	50729399	ENSG00000106070.17|GRB10|pc|chr7:50729299:50729399:-	0	-
#Deleted in new
chr7	50747578	50747664	ENSG00000106070.17|GRB10|pc|chr7:50747578:50747664:-	0	-
#Deleted in new
chr7	50755886	50756056	ENSG00000106070.17|GRB10|pc|chr7:50755886:50756056:-	0	-
#Deleted in new
chr7	50755886	50756059	ENSG00000106070.17|GRB10|pc|chr7:50755886:50756059:-	0	-
#Deleted in new
chr7	50755886	50756064	ENSG00000106070.17|GRB10|pc|chr7:50755886:50756064:-	0	-
#Deleted in new
chr7	50755891	50756056	ENSG00000106070.17|GRB10|pc|chr7:50755891:50756056:-	0	-
#Deleted in new
chr7	50757115	50757249	ENSG00000106070.17|GRB10|pc|chr7:50757115:50757249:-	0	-
#Deleted in new
chr7	50761657	50762014	ENSG00000106070.17|GRB10|pc|chr7:50761657:50762014:-	0	-
#Deleted in new
chr7	50841813	50841992	ENSG00000236046.1|AC004920.1|lncRNA|chr7:50841813:50841992:-	0	-
#Deleted in new
chr7	50866746	50866770	ENSG00000228204.2|AC004830.1|lncRNA|chr7:50866746:50866770:+	0	+
#Deleted in new
chr7	51018356	51018411	ENSG00000228204.2|AC004830.1|lncRNA|chr7:51018356:51018411:+	0	+
#Deleted in new
chr7	51020971	51021052	ENSG00000228204.2|AC004830.1|lncRNA|chr7:51020971:51021052:+	0	+
#Deleted in new
chr7	51020971	51021285	ENSG00000228204.2|AC004830.1|lncRNA|chr7:51020971:51021285:+	0	+
#Deleted in new
chr7	51630678	51630870	ENSG00000229403.1|AC005999.1|lncRNA|chr7:51630678:51630870:+	0	+
#Deleted in new
chr7	5216171	5216250	ENSG00000157954.14|WIPI2|pc|chr7:5216171:5216250:+	0	+
#Deleted in new
chr7	52165234	52165409	ENSG00000233960.1|AC079763.1|lncRNA|chr7:52165234:52165409:-	0	-
#Deleted in new
chr7	52178525	52178621	ENSG00000233960.1|AC079763.1|lncRNA|chr7:52178525:52178621:-	0	-
#Deleted in new
chr7	52192608	52192913	ENSG00000233960.1|AC079763.1|lncRNA|chr7:52192608:52192913:-	0	-
#Partially deleted in new
chr7	5225949	5227344	ENSG00000157954.14|WIPI2|pc|chr7:5225949:5227344:+	0	+
#Deleted in new
chr7	524853	525232	ENSG00000223855.1|HRAT92|lncRNA|chr7:524853:525232:+	0	+
#Deleted in new
chr7	5329936	5329969	ENSG00000182095.14|TNRC18|pc|chr7:5329936:5329969:-	0	-
#Deleted in new
chr7	53514991	53515276	ENSG00000234105.1|AC009468.2|lncRNA|chr7:53514991:53515276:-	0	-
#Deleted in new
chr7	53517035	53517116	ENSG00000234105.1|AC009468.2|lncRNA|chr7:53517035:53517116:-	0	-
#Deleted in new
chr7	53559213	53559418	ENSG00000228627.1|AC009468.1|lncRNA|chr7:53559213:53559418:-	0	-
#Deleted in new
chr7	53655508	53657448	ENSG00000205628.2|LINC01446|lncRNA|chr7:53655508:53657448:-	0	-
#Deleted in new
chr7	53691926	53692089	ENSG00000205628.2|LINC01446|lncRNA|chr7:53691926:53692089:-	0	-
#Deleted in new
chr7	53765126	53765245	ENSG00000205628.2|LINC01446|lncRNA|chr7:53765126:53765245:-	0	-
#Deleted in new
chr7	53765482	53766227	ENSG00000205628.2|LINC01446|lncRNA|chr7:53765482:53766227:-	0	-
#Deleted in new
chr7	53811507	53811931	ENSG00000205628.2|LINC01446|lncRNA|chr7:53811507:53811931:-	0	-
#Deleted in new
chr7	53926675	53926985	ENSG00000238131.1|AC073521.1|lncRNA|chr7:53926675:53926985:-	0	-
#Deleted in new
chr7	54201223	54202421	ENSG00000280920.1|HPVC1|lncRNA|chr7:54201223:54202421:+	0	+
#Deleted in new
chr7	5431334	5431502	ENSG00000155034.18|FBXL18|pc|chr7:5431334:5431502:-	0	-
#Deleted in new
chr7	54330696	54330818	ENSG00000231427.5|LINC01445|lncRNA|chr7:54330696:54330818:+	0	+
#Deleted in new
chr7	54330778	54330818	ENSG00000231427.5|LINC01445|lncRNA|chr7:54330778:54330818:+	0	+
#Deleted in new
chr7	54347293	54347365	ENSG00000231427.5|LINC01445|lncRNA|chr7:54347293:54347365:+	0	+
#Deleted in new
chr7	5438489	5438651	ENSG00000155034.18|FBXL18|pc|chr7:5438489:5438651:-	0	-
#Deleted in new
chr7	5447725	5447843	ENSG00000155034.18|FBXL18|pc|chr7:5447725:5447843:-	0	-
#Deleted in new
chr7	54578279	54578794	ENSG00000228735.1|AC011228.1|lncRNA|chr7:54578279:54578794:-	0	-
#Deleted in new
chr7	54759790	54759974	ENSG00000132432.13|SEC61G|pc|chr7:54759790:54759974:-	0	-
#Deleted in new
chr7	5480450	5481022	ENSG00000155034.18|FBXL18|pc|chr7:5480450:5481022:-	0	-
#Deleted in new
chr7	54804665	54804928	ENSG00000234707.2|AC074351.1|lncRNA|chr7:54804665:54804928:+	0	+
#Deleted in new
chr7	5489177	5490212	ENSG00000155034.18|FBXL18|pc|chr7:5489177:5490212:-	0	-
#Deleted in new
chr7	55119055	55119401	ENSG00000146648.17|EGFR|pc|chr7:55119055:55119401:+	0	+
#Partially deleted in new
chr7	55168522	55168635	ENSG00000146648.17|EGFR|pc|chr7:55168522:55168635:+	0	+
#Partially deleted in new
chr7	55170306	55171045	ENSG00000146648.17|EGFR|pc|chr7:55170306:55171045:+	0	+
#Deleted in new
chr7	55255186	55255418	ENSG00000280890.1|AC073324.2|lncRNA|chr7:55255186:55255418:-	0	-
#Deleted in new
chr7	55255530	55255635	ENSG00000280890.1|AC073324.2|lncRNA|chr7:55255530:55255635:-	0	-
#Deleted in new
chr7	55379646	55379833	ENSG00000132434.9|LANCL2|pc|chr7:55379646:55379833:+	0	+
#Deleted in new
chr7	55394068	55394112	ENSG00000132434.9|LANCL2|pc|chr7:55394068:55394112:+	0	+
#Deleted in new
chr7	55396945	55397231	ENSG00000132434.9|LANCL2|pc|chr7:55396945:55397231:+	0	+
#Deleted in new
chr7	5540675	5540771	ENSG00000075624.13|ACTB|pc|chr7:5540675:5540771:-	0	-
#Deleted in new
chr7	55411359	55411402	ENSG00000132434.9|LANCL2|pc|chr7:55411359:55411402:+	0	+
#Deleted in new
chr7	55436055	55436174	ENSG00000154978.12|VOPP1|pc|chr7:55436055:55436174:-	0	-
#Deleted in new
chr7	55515935	55516077	ENSG00000154978.12|VOPP1|pc|chr7:55515935:55516077:-	0	-
#Deleted in new
chr7	55521580	55521866	ENSG00000154978.12|VOPP1|pc|chr7:55521580:55521866:-	0	-
#Deleted in new
chr7	55521580	55521870	ENSG00000154978.12|VOPP1|pc|chr7:55521580:55521870:-	0	-
#Deleted in new
chr7	55526734	55527022	ENSG00000154978.12|VOPP1|pc|chr7:55526734:55527022:-	0	-
#Deleted in new
chr7	55530828	55530911	ENSG00000154978.12|VOPP1|pc|chr7:55530828:55530911:-	0	-
#Deleted in new
chr7	55537500	55537694	ENSG00000154978.12|VOPP1|pc|chr7:55537500:55537694:-	0	-
#Deleted in new
chr7	55537558	55537694	ENSG00000154978.12|VOPP1|pc|chr7:55537558:55537694:-	0	-
#Deleted in new
chr7	55538612	55538660	ENSG00000154978.12|VOPP1|pc|chr7:55538612:55538660:-	0	-
#Deleted in new
chr7	55539488	55539627	ENSG00000154978.12|VOPP1|pc|chr7:55539488:55539627:-	0	-
#Deleted in new
chr7	55552652	55552852	ENSG00000154978.12|VOPP1|pc|chr7:55552652:55552852:-	0	-
#Deleted in new
chr7	55553810	55553887	ENSG00000154978.12|VOPP1|pc|chr7:55553810:55553887:-	0	-
#Deleted in new
chr7	55561853	55562051	ENSG00000154978.12|VOPP1|pc|chr7:55561853:55562051:-	0	-
#Deleted in new
chr7	55561979	55562051	ENSG00000154978.12|VOPP1|pc|chr7:55561979:55562051:-	0	-
#Deleted in new
chr7	5556730	5557245	ENSG00000272719.1|AC006483.2|lncRNA|chr7:5556730:5557245:+	0	+
#Deleted in new
chr7	55593776	55593896	ENSG00000231394.1|AC099681.2|lncRNA|chr7:55593776:55593896:+	0	+
#Deleted in new
chr7	55594583	55595006	ENSG00000231394.1|AC099681.2|lncRNA|chr7:55594583:55595006:+	0	+
#Partially deleted in new
chr7	5562573	5562790	ENSG00000075624.13|ACTB|pc|chr7:5562573:5562790:-	0	-
#Partially deleted in new
chr7	5562573	5562828	ENSG00000075624.13|ACTB|pc|chr7:5562573:5562828:-	0	-
#Split in new
chr7	55793543	55796092	ENSG00000154997.8|SEPT14|pc|chr7:55793543:55796092:-	0	-
#Deleted in new
chr7	55850786	55850906	ENSG00000154997.8|SEPT14|pc|chr7:55850786:55850906:-	0	-
#Deleted in new
chr7	55887276	55887680	ENSG00000249773.3|AC092647.5|pc|chr7:55887276:55887680:+	0	+
#Deleted in new
chr7	55887474	55887680	ENSG00000178665.14|ZNF713|pc|chr7:55887474:55887680:+	0	+
#Deleted in new
chr7	55887475	55887680	ENSG00000178665.14|ZNF713|pc|chr7:55887475:55887680:+	0	+
#Deleted in new
chr7	55887511	55887680	ENSG00000178665.14|ZNF713|pc|chr7:55887511:55887680:+	0	+
#Deleted in new
chr7	55906188	55906379	ENSG00000178665.14|ZNF713|pc|chr7:55906188:55906379:+	0	+
#Deleted in new
chr7	55906252	55906379	ENSG00000178665.14|ZNF713|pc|chr7:55906252:55906379:+	0	+
#Deleted in new
chr7	55906252	55906379	ENSG00000249773.3|AC092647.5|pc|chr7:55906252:55906379:+	0	+
#Deleted in new
chr7	55911615	55911913	ENSG00000178665.14|ZNF713|pc|chr7:55911615:55911913:+	0	+
#Deleted in new
chr7	55911615	55912068	ENSG00000178665.14|ZNF713|pc|chr7:55911615:55912068:+	0	+
#Deleted in new
chr7	55911615	55912068	ENSG00000249773.3|AC092647.5|pc|chr7:55911615:55912068:+	0	+
#Deleted in new
chr7	55911991	55912068	ENSG00000178665.14|ZNF713|pc|chr7:55911991:55912068:+	0	+
#Deleted in new
chr7	55912634	55912723	ENSG00000178665.14|ZNF713|pc|chr7:55912634:55912723:+	0	+
#Deleted in new
chr7	55912637	55912723	ENSG00000178665.14|ZNF713|pc|chr7:55912637:55912723:+	0	+
#Deleted in new
chr7	55912666	55912723	ENSG00000249773.3|AC092647.5|pc|chr7:55912666:55912723:+	0	+
#Deleted in new
chr7	55918041	55918297	ENSG00000178665.14|ZNF713|pc|chr7:55918041:55918297:+	0	+
#Partially deleted in new
chr7	55923161	55924878	ENSG00000178665.14|ZNF713|pc|chr7:55923161:55924878:+	0	+
#Deleted in new
chr7	55923606	55923699	ENSG00000178665.14|ZNF713|pc|chr7:55923606:55923699:+	0	+
#Deleted in new
chr7	55923606	55923699	ENSG00000249773.3|AC092647.5|pc|chr7:55923606:55923699:+	0	+
#Deleted in new
chr7	55924191	55924342	ENSG00000178665.14|ZNF713|pc|chr7:55924191:55924342:+	0	+
#Split in new
chr7	55938981	55942225	ENSG00000178665.14|ZNF713|pc|chr7:55938981:55942225:+	0	+
#Deleted in new
chr7	55951962	55952276	ENSG00000239789.5|MRPS17|pc|chr7:55951962:55952276:+	0	+
#Split in new
chr7	55954908	55956501	ENSG00000239789.5|MRPS17|pc|chr7:55954908:55956501:+	0	+
#Partially deleted in new
chr7	55964961	55965209	ENSG00000146729.9|NIPSNAP2|pc|chr7:55964961:55965209:+	0	+
#Deleted in new
chr7	55964997	55965150	ENSG00000146729.9|NIPSNAP2|pc|chr7:55964997:55965150:+	0	+
#Deleted in new
chr7	55965112	55965150	ENSG00000146729.9|NIPSNAP2|pc|chr7:55965112:55965150:+	0	+
#Deleted in new
chr7	56033133	56033494	ENSG00000146733.13|PSPH|pc|chr7:56033133:56033494:-	0	-
#Deleted in new
chr7	56033380	56033494	ENSG00000146733.13|PSPH|pc|chr7:56033380:56033494:-	0	-
#Deleted in new
chr7	56043147	56043261	ENSG00000146733.13|PSPH|pc|chr7:56043147:56043261:-	0	-
#Deleted in new
chr7	56060610	56060678	ENSG00000146731.10|CCT6A|pc|chr7:56060610:56060678:+	0	+
#Deleted in new
chr7	56084148	56084244	ENSG00000164776.9|PHKG1|pc|chr7:56084148:56084244:-	0	-
#Deleted in new
chr7	56084160	56084244	ENSG00000164776.9|PHKG1|pc|chr7:56084160:56084244:-	0	-
#Partially deleted in new
chr7	5620046	5623179	ENSG00000011275.18|RNF216|pc|chr7:5620046:5623179:-	0	-
#Deleted in new
chr7	56482104	56482456	ENSG00000225488.1|AC092447.4|lncRNA|chr7:56482104:56482456:-	0	-
#Deleted in new
chr7	56482974	56483295	ENSG00000225488.1|AC092447.4|lncRNA|chr7:56482974:56483295:-	0	-
#Deleted in new
chr7	56493123	56497285	ENSG00000261275.1|AC092447.8|lncRNA|chr7:56493123:56497285:+	0	+
#Deleted in new
chr7	565100	565619	ENSG00000229380.1|AC147651.1|lncRNA|chr7:565100:565619:+	0	+
#Deleted in new
chr7	56534229	56536888	ENSG00000233288.1|AC092447.5|lncRNA|chr7:56534229:56536888:-	0	-
#Deleted in new
chr7	56538048	56538130	ENSG00000233288.1|AC092447.5|lncRNA|chr7:56538048:56538130:-	0	-
#Deleted in new
chr7	5666609	5666704	ENSG00000237738.1|RNF216-IT1|lncRNA|chr7:5666609:5666704:-	0	-
#Deleted in new
chr7	5680353	5680461	ENSG00000237738.1|RNF216-IT1|lncRNA|chr7:5680353:5680461:-	0	-
#Split in new
chr7	56809213	56832990	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56809213:56832990:-	0	-
#Deleted in new
chr7	56811798	56812446	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56811798:56812446:-	0	-
#Deleted in new
chr7	56813489	56813628	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56813489:56813628:-	0	-
#Deleted in new
chr7	56815466	56815588	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56815466:56815588:-	0	-
#Deleted in new
chr7	56815591	56815978	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56815591:56815978:-	0	-
#Deleted in new
chr7	56817477	56817864	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56817477:56817864:-	0	-
#Deleted in new
chr7	56819315	56819702	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56819315:56819702:-	0	-
#Deleted in new
chr7	56821297	56821684	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56821297:56821684:-	0	-
#Deleted in new
chr7	56833079	56833138	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56833079:56833138:-	0	-
#Deleted in new
chr7	56835195	56835388	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56835195:56835388:-	0	-
#Deleted in new
chr7	56847830	56847895	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56847830:56847895:-	0	-
#Deleted in new
chr7	56848757	56848800	ENSG00000279072.1|AC118758.3|lncRNA|chr7:56848757:56848800:-	0	-
#Duplicated in new
chr7	57120718	57121152	ENSG00000185177.12|ZNF479|pc|chr7:57120718:57121152:-	0	-
#Deleted in new
chr7	57139607	57139864	ENSG00000185177.12|ZNF479|pc|chr7:57139607:57139864:-	0	-
#Deleted in new
chr7	57209864	57210135	ENSG00000234089.1|AC099654.1|lncRNA|chr7:57209864:57210135:-	0	-
#Deleted in new
chr7	57221168	57221581	ENSG00000234089.1|AC099654.1|lncRNA|chr7:57221168:57221581:-	0	-
#Deleted in new
chr7	57222023	57222159	ENSG00000234089.1|AC099654.1|lncRNA|chr7:57222023:57222159:-	0	-
#Deleted in new
chr7	57222023	57222174	ENSG00000234089.1|AC099654.1|lncRNA|chr7:57222023:57222174:-	0	-
#Deleted in new
chr7	5732969	5733162	ENSG00000011275.18|RNF216|pc|chr7:5732969:5733162:-	0	-
#Partially deleted in new
chr7	57402180	57404717	ENSG00000280225.1|AC237221.2|lncRNA|chr7:57402180:57404717:-	0	-
#Partially deleted in new
chr7	57404770	57404995	ENSG00000260653.5|AC237221.1|lncRNA|chr7:57404770:57404995:+	0	+
#Partially deleted in new
chr7	57404782	57404995	ENSG00000260653.5|AC237221.1|lncRNA|chr7:57404782:57404995:+	0	+
#Deleted in new
chr7	57412841	57412962	ENSG00000260653.5|AC237221.1|lncRNA|chr7:57412841:57412962:+	0	+
#Deleted in new
chr7	57416008	57416203	ENSG00000260653.5|AC237221.1|lncRNA|chr7:57416008:57416203:+	0	+
#Deleted in new
chr7	57450176	57450327	ENSG00000182111.8|ZNF716|pc|chr7:57450176:57450327:+	0	+
#Deleted in new
chr7	5760390	5760511	ENSG00000011275.18|RNF216|pc|chr7:5760390:5760511:-	0	-
#Deleted in new
chr7	5766894	5766939	ENSG00000011275.18|RNF216|pc|chr7:5766894:5766939:-	0	-
#Deleted in new
chr7	5775004	5775179	ENSG00000011275.18|RNF216|pc|chr7:5775004:5775179:-	0	-
#Partially deleted in new
chr7	5924740	5924814	ENSG00000122674.11|CCZ1|pc|chr7:5924740:5924814:+	0	+
#Partially deleted in new
chr7	5953074	5953583	ENSG00000155026.16|RSPH10B|pc|chr7:5953074:5953583:-	0	-
#Partially deleted in new
chr7	5963411	5963482	ENSG00000155026.16|RSPH10B|pc|chr7:5963411:5963482:-	0	-
#Deleted in new
chr7	5967317	5967437	ENSG00000155026.16|RSPH10B|pc|chr7:5967317:5967437:-	0	-
#Deleted in new
chr7	6012678	6013140	ENSG00000106305.9|AIMP2|pc|chr7:6012678:6013140:+	0	+
#Deleted in new
chr7	6014901	6015052	ENSG00000106305.9|AIMP2|pc|chr7:6014901:6015052:+	0	+
#Partially deleted in new
chr7	6046722	6047091	ENSG00000086232.12|EIF2AK1|pc|chr7:6046722:6047091:-	0	-
#Deleted in new
chr7	6046776	6046902	ENSG00000086232.12|EIF2AK1|pc|chr7:6046776:6046902:-	0	-
#Deleted in new
chr7	6046776	6046980	ENSG00000086232.12|EIF2AK1|pc|chr7:6046776:6046980:-	0	-
#Deleted in new
chr7	6058147	6058242	ENSG00000086232.12|EIF2AK1|pc|chr7:6058147:6058242:-	0	-
#Deleted in new
chr7	6084428	6084672	ENSG00000231704.5|AC004895.1|lncRNA|chr7:6084428:6084672:+	0	+
#Deleted in new
chr7	6085144	6085256	ENSG00000231704.5|AC004895.1|lncRNA|chr7:6085144:6085256:+	0	+
#Partially deleted in new
chr7	6088789	6088900	ENSG00000231704.5|AC004895.1|lncRNA|chr7:6088789:6088900:+	0	+
#Deleted in new
chr7	6093028	6093052	ENSG00000231704.5|AC004895.1|lncRNA|chr7:6093028:6093052:+	0	+
#Deleted in new
chr7	6093028	6093085	ENSG00000231704.5|AC004895.1|lncRNA|chr7:6093028:6093085:+	0	+
#Deleted in new
chr7	6111796	6111951	ENSG00000106346.11|USP42|pc|chr7:6111796:6111951:+	0	+
#Deleted in new
chr7	6116479	6116939	ENSG00000106346.11|USP42|pc|chr7:6116479:6116939:+	0	+
#Deleted in new
chr7	6116794	6116939	ENSG00000106346.11|USP42|pc|chr7:6116794:6116939:+	0	+
#Deleted in new
chr7	6128137	6128230	ENSG00000106346.11|USP42|pc|chr7:6128137:6128230:+	0	+
#Deleted in new
chr7	6159449	6159493	ENSG00000106346.11|USP42|pc|chr7:6159449:6159493:+	0	+
#Partially deleted in new
chr7	6171982	6172110	ENSG00000008256.15|CYTH3|pc|chr7:6171982:6172110:-	0	-
#Partially deleted in new
chr7	6171982	6172137	ENSG00000008256.15|CYTH3|pc|chr7:6171982:6172137:-	0	-
#Deleted in new
chr7	6172730	6173075	ENSG00000008256.15|CYTH3|pc|chr7:6172730:6173075:-	0	-
#Deleted in new
chr7	63326673	63326900	ENSG00000226587.1|AC006455.1|lncRNA|chr7:63326673:63326900:-	0	-
#Deleted in new
chr7	63351598	63351769	ENSG00000230000.2|AC006455.5|lncRNA|chr7:63351598:63351769:+	0	+
#Deleted in new
chr7	63351598	63351774	ENSG00000230000.2|AC006455.5|lncRNA|chr7:63351598:63351774:+	0	+
#Deleted in new
chr7	63354246	63354326	ENSG00000226587.1|AC006455.1|lncRNA|chr7:63354246:63354326:-	0	-
#Deleted in new
chr7	63354456	63354575	ENSG00000229301.1|AC006455.4|lncRNA|chr7:63354456:63354575:+	0	+
#Deleted in new
chr7	63355144	63355309	ENSG00000229301.1|AC006455.4|lncRNA|chr7:63355144:63355309:+	0	+
#Partially deleted in new
chr7	63359062	63359306	ENSG00000229301.1|AC006455.4|lncRNA|chr7:63359062:63359306:+	0	+
#Deleted in new
chr7	63380465	63380747	ENSG00000230600.1|AC073188.3|lncRNA|chr7:63380465:63380747:-	0	-
#Deleted in new
chr7	63385732	63385789	ENSG00000230600.1|AC073188.3|lncRNA|chr7:63385732:63385789:-	0	-
#Partially deleted in new
chr7	63388807	63389051	ENSG00000232817.1|AC073188.4|lncRNA|chr7:63388807:63389051:-	0	-
#Deleted in new
chr7	63392804	63392969	ENSG00000232817.1|AC073188.4|lncRNA|chr7:63392804:63392969:-	0	-
#Deleted in new
chr7	63393538	63393657	ENSG00000232817.1|AC073188.4|lncRNA|chr7:63393538:63393657:-	0	-
#Deleted in new
chr7	63393787	63393867	ENSG00000227305.1|AC073188.2|lncRNA|chr7:63393787:63393867:+	0	+
#Deleted in new
chr7	63394276	63394771	ENSG00000234387.1|AC073188.5|lncRNA|chr7:63394276:63394771:+	0	+
#Deleted in new
chr7	63395261	63395439	ENSG00000234387.1|AC073188.5|lncRNA|chr7:63395261:63395439:+	0	+
#Deleted in new
chr7	63396344	63396515	ENSG00000268181.3|AC073188.6|lncRNA|chr7:63396344:63396515:-	0	-
#Deleted in new
chr7	6341872	6341970	ENSG00000178397.12|FAM220A|pc|chr7:6341872:6341970:-	0	-
#Deleted in new
chr7	63421223	63421523	ENSG00000227305.1|AC073188.2|lncRNA|chr7:63421223:63421523:+	0	+
#Deleted in new
chr7	63421935	63422046	ENSG00000227305.1|AC073188.2|lncRNA|chr7:63421935:63422046:+	0	+
#Deleted in new
chr7	63888199	63888439	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63888199:63888439:-	0	-
#Deleted in new
chr7	63888224	63888439	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63888224:63888439:-	0	-
#Deleted in new
chr7	63888315	63888439	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63888315:63888439:-	0	-
#Deleted in new
chr7	63898761	63898834	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63898761:63898834:-	0	-
#Deleted in new
chr7	63898761	63898841	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63898761:63898841:-	0	-
#Deleted in new
chr7	63898761	63898909	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63898761:63898909:-	0	-
#Deleted in new
chr7	63898761	63899143	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63898761:63899143:-	0	-
#Deleted in new
chr7	63898761	63899327	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63898761:63899327:-	0	-
#Deleted in new
chr7	63898825	63899433	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63898825:63899433:-	0	-
#Deleted in new
chr7	63898878	63899446	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63898878:63899446:-	0	-
#Deleted in new
chr7	63899606	63899790	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63899606:63899790:-	0	-
#Deleted in new
chr7	63899606	63899803	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63899606:63899803:-	0	-
#Duplicated in new
chr7	63900575	63900794	ENSG00000236299.7|AC092634.5|lncRNA|chr7:63900575:63900794:-	0	-
#Partially deleted in new
chr7	63900822	63901038	ENSG00000226581.1|AC092634.3|lncRNA|chr7:63900822:63901038:+	0	+
#Deleted in new
chr7	63917794	63917994	ENSG00000226581.1|AC092634.3|lncRNA|chr7:63917794:63917994:+	0	+
#Deleted in new
chr7	63959843	63960260	ENSG00000284534.1|AC092634.8|lncRNA|chr7:63959843:63960260:-	0	-
#Deleted in new
chr7	64027851	64027912	ENSG00000228564.1|LINC01005|lncRNA|chr7:64027851:64027912:-	0	-
#Deleted in new
chr7	64028064	64028410	ENSG00000228564.1|LINC01005|lncRNA|chr7:64028064:64028410:-	0	-
#Deleted in new
chr7	64028190	64028410	ENSG00000228564.1|LINC01005|lncRNA|chr7:64028190:64028410:-	0	-
#Deleted in new
chr7	64028515	64028774	ENSG00000228564.1|LINC01005|lncRNA|chr7:64028515:64028774:-	0	-
#Deleted in new
chr7	64029285	64029361	ENSG00000228564.1|LINC01005|lncRNA|chr7:64029285:64029361:-	0	-
#Deleted in new
chr7	64029996	64030105	ENSG00000228564.1|LINC01005|lncRNA|chr7:64029996:64030105:-	0	-
#Deleted in new
chr7	64140494	64140523	ENSG00000229881.1|AC091685.1|lncRNA|chr7:64140494:64140523:+	0	+
#Partially deleted in new
chr7	6416258	6416754	ENSG00000164535.14|DAGLB|pc|chr7:6416258:6416754:-	0	-
#Partially deleted in new
chr7	6416840	6417791	ENSG00000164535.14|DAGLB|pc|chr7:6416840:6417791:-	0	-
#Deleted in new
chr7	64207089	64207241	ENSG00000223614.5|ZNF735|pc|chr7:64207089:64207241:+	0	+
#Partially deleted in new
chr7	6421726	6422803	ENSG00000164535.14|DAGLB|pc|chr7:6421726:6422803:-	0	-
#Deleted in new
chr7	64228473	64228652	ENSG00000197123.9|ZNF679|pc|chr7:64228473:64228652:+	0	+
#Deleted in new
chr7	64249027	64249156	ENSG00000197123.9|ZNF679|pc|chr7:64249027:64249156:+	0	+
#Deleted in new
chr7	64249117	64249156	ENSG00000197123.9|ZNF679|pc|chr7:64249117:64249156:+	0	+
#Deleted in new
chr7	64307458	64307682	ENSG00000234444.9|ZNF736|pc|chr7:64307458:64307682:+	0	+
#Deleted in new
chr7	64307537	64307868	ENSG00000234444.9|ZNF736|pc|chr7:64307537:64307868:+	0	+
#Deleted in new
chr7	64307980	64308315	ENSG00000234444.9|ZNF736|pc|chr7:64307980:64308315:+	0	+
#Deleted in new
chr7	64308156	64308315	ENSG00000234444.9|ZNF736|pc|chr7:64308156:64308315:+	0	+
#Deleted in new
chr7	64308460	64308625	ENSG00000234444.9|ZNF736|pc|chr7:64308460:64308625:+	0	+
#Deleted in new
chr7	64308460	64308791	ENSG00000234444.9|ZNF736|pc|chr7:64308460:64308791:+	0	+
#Deleted in new
chr7	64310058	64310482	ENSG00000234444.9|ZNF736|pc|chr7:64310058:64310482:+	0	+
#Deleted in new
chr7	64310277	64310473	ENSG00000234444.9|ZNF736|pc|chr7:64310277:64310473:+	0	+
#Partially deleted in new
chr7	64348089	64354860	ENSG00000234444.9|ZNF736|pc|chr7:64348089:64354860:+	0	+
#Deleted in new
chr7	6435435	6435481	ENSG00000164535.14|DAGLB|pc|chr7:6435435:6435481:-	0	-
#Deleted in new
chr7	6445700	6445848	ENSG00000164535.14|DAGLB|pc|chr7:6445700:6445848:-	0	-
#Deleted in new
chr7	64524698	64526517	ENSG00000173041.11|ZNF680|pc|chr7:64524698:64526517:-	0	-
#Deleted in new
chr7	64560945	64561273	ENSG00000173041.11|ZNF680|pc|chr7:64560945:64561273:-	0	-
#Deleted in new
chr7	64562924	64563022	ENSG00000173041.11|ZNF680|pc|chr7:64562924:64563022:-	0	-
#Deleted in new
chr7	64562924	64563041	ENSG00000173041.11|ZNF680|pc|chr7:64562924:64563041:-	0	-
#Deleted in new
chr7	64562924	64563075	ENSG00000173041.11|ZNF680|pc|chr7:64562924:64563075:-	0	-
#Deleted in new
chr7	64562924	64563106	ENSG00000173041.11|ZNF680|pc|chr7:64562924:64563106:-	0	-
#Deleted in new
chr7	64666082	64666285	ENSG00000196247.11|ZNF107|pc|chr7:64666082:64666285:+	0	+
#Deleted in new
chr7	64666132	64666285	ENSG00000196247.11|ZNF107|pc|chr7:64666132:64666285:+	0	+
#Deleted in new
chr7	64666197	64666285	ENSG00000196247.11|ZNF107|pc|chr7:64666197:64666285:+	0	+
#Deleted in new
chr7	64669036	64669178	ENSG00000196247.11|ZNF107|pc|chr7:64669036:64669178:+	0	+
#Deleted in new
chr7	64679172	64679336	ENSG00000196247.11|ZNF107|pc|chr7:64679172:64679336:+	0	+
#Deleted in new
chr7	64679176	64679336	ENSG00000196247.11|ZNF107|pc|chr7:64679176:64679336:+	0	+
#Deleted in new
chr7	64689354	64690525	ENSG00000196247.11|ZNF107|pc|chr7:64689354:64690525:+	0	+
#Deleted in new
chr7	64690398	64690525	ENSG00000196247.11|ZNF107|pc|chr7:64690398:64690525:+	0	+
#Partially deleted in new
chr7	6469595	6470406	ENSG00000136240.9|KDELR2|pc|chr7:6469595:6470406:-	0	-
#Deleted in new
chr7	64794387	64794571	ENSG00000197008.9|ZNF138|pc|chr7:64794387:64794571:+	0	+
#Deleted in new
chr7	64794424	64794571	ENSG00000197008.9|ZNF138|pc|chr7:64794424:64794571:+	0	+
#Deleted in new
chr7	64794427	64794571	ENSG00000197008.9|ZNF138|pc|chr7:64794427:64794571:+	0	+
#Deleted in new
chr7	64794489	64794571	ENSG00000197008.9|ZNF138|pc|chr7:64794489:64794571:+	0	+
#Deleted in new
chr7	64814058	64814147	ENSG00000197008.9|ZNF138|pc|chr7:64814058:64814147:+	0	+
#Duplicated in new
chr7	64831450	64832202	ENSG00000197008.9|ZNF138|pc|chr7:64831450:64832202:+	0	+
#Duplicated in new
chr7	64831450	64832242	ENSG00000197008.9|ZNF138|pc|chr7:64831450:64832242:+	0	+
#Deleted in new
chr7	64870171	64870381	ENSG00000198039.11|ZNF273|pc|chr7:64870171:64870381:+	0	+
#Deleted in new
chr7	64877659	64877874	ENSG00000198039.11|ZNF273|pc|chr7:64877659:64877874:+	0	+
#Deleted in new
chr7	64878380	64878495	ENSG00000198039.11|ZNF273|pc|chr7:64878380:64878495:+	0	+
#Deleted in new
chr7	64879449	64879731	ENSG00000198039.11|ZNF273|pc|chr7:64879449:64879731:+	0	+
#Deleted in new
chr7	64879449	64880239	ENSG00000198039.11|ZNF273|pc|chr7:64879449:64880239:+	0	+
#Deleted in new
chr7	64882492	64882785	ENSG00000198039.11|ZNF273|pc|chr7:64882492:64882785:+	0	+
#Deleted in new
chr7	64882512	64882785	ENSG00000198039.11|ZNF273|pc|chr7:64882512:64882785:+	0	+
#Deleted in new
chr7	64888526	64888817	ENSG00000189316.3|AC073349.1|lncRNA|chr7:64888526:64888817:-	0	-
#Deleted in new
chr7	64888572	64888868	ENSG00000198039.11|ZNF273|pc|chr7:64888572:64888868:+	0	+
#Deleted in new
chr7	64888572	64889855	ENSG00000198039.11|ZNF273|pc|chr7:64888572:64889855:+	0	+
#Deleted in new
chr7	64889065	64889187	ENSG00000189316.3|AC073349.1|lncRNA|chr7:64889065:64889187:-	0	-
#Deleted in new
chr7	64889451	64890100	ENSG00000189316.3|AC073349.1|lncRNA|chr7:64889451:64890100:-	0	-
#Deleted in new
chr7	64893411	64893456	ENSG00000198039.11|ZNF273|pc|chr7:64893411:64893456:+	0	+
#Deleted in new
chr7	64897347	64898054	ENSG00000198039.11|ZNF273|pc|chr7:64897347:64898054:+	0	+
#Deleted in new
chr7	64903246	64903419	ENSG00000198039.11|ZNF273|pc|chr7:64903246:64903419:+	0	+
#Deleted in new
chr7	64903252	64903366	ENSG00000198039.11|ZNF273|pc|chr7:64903252:64903366:+	0	+
#Deleted in new
chr7	64903287	64903419	ENSG00000198039.11|ZNF273|pc|chr7:64903287:64903419:+	0	+
#Deleted in new
chr7	64923385	64924431	ENSG00000198039.11|ZNF273|pc|chr7:64923385:64924431:+	0	+
#Split in new
chr7	64979922	64981482	ENSG00000152926.14|ZNF117|pc|chr7:64979922:64981482:-	0	-
#Deleted in new
chr7	64989946	64991036	ENSG00000152926.14|ZNF117|pc|chr7:64989946:64991036:-	0	-
#Deleted in new
chr7	64990808	64993414	ENSG00000213462.4|ERV3-1|pc|chr7:64990808:64993414:-	0	-
#Deleted in new
chr7	65003668	65005194	ENSG00000213462.4|ERV3-1|pc|chr7:65003668:65005194:-	0	-
#Deleted in new
chr7	65006083	65006322	ENSG00000213462.4|ERV3-1|pc|chr7:65006083:65006322:-	0	-
#Deleted in new
chr7	65006540	65006653	ENSG00000213462.4|ERV3-1|pc|chr7:65006540:65006653:-	0	-
#Deleted in new
chr7	65006540	65006659	ENSG00000213462.4|ERV3-1|pc|chr7:65006540:65006659:-	0	-
#Deleted in new
chr7	65006540	65006684	ENSG00000152926.14|ZNF117|pc|chr7:65006540:65006684:-	0	-
#Deleted in new
chr7	65006540	65006743	ENSG00000213462.4|ERV3-1|pc|chr7:65006540:65006743:-	0	-
#Deleted in new
chr7	65269373	65269538	ENSG00000282381.1|AC104073.4|lncRNA|chr7:65269373:65269538:+	0	+
#Deleted in new
chr7	65303528	65303802	ENSG00000282381.1|AC104073.4|lncRNA|chr7:65303528:65303802:+	0	+
#Deleted in new
chr7	65306079	65306238	ENSG00000282381.1|AC104073.4|lncRNA|chr7:65306079:65306238:+	0	+
#Deleted in new
chr7	65373798	65374000	ENSG00000146757.13|ZNF92|pc|chr7:65373798:65374000:+	0	+
#Deleted in new
chr7	65373837	65374000	ENSG00000146757.13|ZNF92|pc|chr7:65373837:65374000:+	0	+
#Deleted in new
chr7	65373838	65374000	ENSG00000146757.13|ZNF92|pc|chr7:65373838:65374000:+	0	+
#Deleted in new
chr7	65373880	65374000	ENSG00000146757.13|ZNF92|pc|chr7:65373880:65374000:+	0	+
#Deleted in new
chr7	65648844	65648981	ENSG00000272693.3|AC073107.1|lncRNA|chr7:65648844:65648981:-	0	-
#Partially deleted in new
chr7	6583305	6584320	ENSG00000136247.14|ZDHHC4|pc|chr7:6583305:6584320:+	0	+
#Deleted in new
chr7	65980693	65980829	ENSG00000169919.16|GUSB|pc|chr7:65980693:65980829:-	0	-
#Deleted in new
chr7	6602663	6602752	ENSG00000146576.12|C7orf26|pc|chr7:6602663:6602752:+	0	+
#Partially deleted in new
chr7	6607536	6607851	ENSG00000146576.12|C7orf26|pc|chr7:6607536:6607851:+	0	+
#Partially deleted in new
chr7	66086743	66087160	ENSG00000126522.16|ASL|pc|chr7:66086743:66087160:+	0	+
#Deleted in new
chr7	66091725	66091809	ENSG00000126522.16|ASL|pc|chr7:66091725:66091809:+	0	+
#Deleted in new
chr7	66119602	66119742	ENSG00000234185.2|AC068533.3|lncRNA|chr7:66119602:66119742:-	0	-
#Deleted in new
chr7	66120552	66120730	ENSG00000234185.2|AC068533.3|lncRNA|chr7:66120552:66120730:-	0	-
#Deleted in new
chr7	66130126	66130248	ENSG00000241258.6|CRCP|pc|chr7:66130126:66130248:+	0	+
#Deleted in new
chr7	66150662	66150948	ENSG00000241258.6|CRCP|pc|chr7:66150662:66150948:+	0	+
#Partially deleted in new
chr7	66152207	66154561	ENSG00000241258.6|CRCP|pc|chr7:66152207:66154561:+	0	+
#Partially deleted in new
chr7	66152207	66154568	ENSG00000241258.6|CRCP|pc|chr7:66152207:66154568:+	0	+
#Deleted in new
chr7	66164982	66165011	ENSG00000234185.2|AC068533.3|lncRNA|chr7:66164982:66165011:-	0	-
#Deleted in new
chr7	66205793	66205921	ENSG00000169902.13|TPST1|pc|chr7:66205793:66205921:+	0	+
#Deleted in new
chr7	66221603	66221642	ENSG00000169902.13|TPST1|pc|chr7:66221603:66221642:+	0	+
#Deleted in new
chr7	66359035	66359473	ENSG00000169902.13|TPST1|pc|chr7:66359035:66359473:+	0	+
#Deleted in new
chr7	66376043	66380003	ENSG00000179406.7|LINC00174|lncRNA|chr7:66376043:66380003:-	0	-
#Deleted in new
chr7	66379826	66380003	ENSG00000179406.7|LINC00174|lncRNA|chr7:66379826:66380003:-	0	-
#Deleted in new
chr7	66382236	66382427	ENSG00000179406.7|LINC00174|lncRNA|chr7:66382236:66382427:-	0	-
#Deleted in new
chr7	66382236	66382431	ENSG00000179406.7|LINC00174|lncRNA|chr7:66382236:66382431:-	0	-
#Deleted in new
chr7	66382418	66382427	ENSG00000179406.7|LINC00174|lncRNA|chr7:66382418:66382427:-	0	-
#Deleted in new
chr7	66388324	66390250	ENSG00000179406.7|LINC00174|lncRNA|chr7:66388324:66390250:-	0	-
#Deleted in new
chr7	66388634	66388845	ENSG00000179406.7|LINC00174|lncRNA|chr7:66388634:66388845:-	0	-
#Deleted in new
chr7	66389184	66390250	ENSG00000179406.7|LINC00174|lncRNA|chr7:66389184:66390250:-	0	-
#Deleted in new
chr7	66390081	66390250	ENSG00000179406.7|LINC00174|lncRNA|chr7:66390081:66390250:-	0	-
#Deleted in new
chr7	66390103	66390250	ENSG00000179406.7|LINC00174|lncRNA|chr7:66390103:66390250:-	0	-
#Deleted in new
chr7	66390130	66390250	ENSG00000179406.7|LINC00174|lncRNA|chr7:66390130:66390250:-	0	-
#Deleted in new
chr7	66391397	66391542	ENSG00000179406.7|LINC00174|lncRNA|chr7:66391397:66391542:-	0	-
#Deleted in new
chr7	66393329	66393729	ENSG00000179406.7|LINC00174|lncRNA|chr7:66393329:66393729:-	0	-
#Deleted in new
chr7	66395878	66395919	ENSG00000179406.7|LINC00174|lncRNA|chr7:66395878:66395919:-	0	-
#Deleted in new
chr7	66395878	66395956	ENSG00000179406.7|LINC00174|lncRNA|chr7:66395878:66395956:-	0	-
#Deleted in new
chr7	66399691	66399795	ENSG00000179406.7|LINC00174|lncRNA|chr7:66399691:66399795:-	0	-
#Deleted in new
chr7	66400321	66400437	ENSG00000179406.7|LINC00174|lncRNA|chr7:66400321:66400437:-	0	-
#Deleted in new
chr7	66400922	66401027	ENSG00000179406.7|LINC00174|lncRNA|chr7:66400922:66401027:-	0	-
#Deleted in new
chr7	66401194	66401338	ENSG00000179406.7|LINC00174|lncRNA|chr7:66401194:66401338:-	0	-
#Deleted in new
chr7	66401194	66401394	ENSG00000179406.7|LINC00174|lncRNA|chr7:66401194:66401394:-	0	-
#Deleted in new
chr7	66402456	66402545	ENSG00000179406.7|LINC00174|lncRNA|chr7:66402456:66402545:-	0	-
#Deleted in new
chr7	66411614	66411702	ENSG00000179406.7|LINC00174|lncRNA|chr7:66411614:66411702:-	0	-
#Deleted in new
chr7	66455658	66455853	ENSG00000179406.7|LINC00174|lncRNA|chr7:66455658:66455853:-	0	-
#Deleted in new
chr7	66467681	66467719	ENSG00000179406.7|LINC00174|lncRNA|chr7:66467681:66467719:-	0	-
#Partially deleted in new
chr7	66474555	66475749	ENSG00000279785.1|AC008267.7|lncRNA|chr7:66474555:66475749:+	0	+
#Deleted in new
chr7	66476244	66476327	ENSG00000179406.7|LINC00174|lncRNA|chr7:66476244:66476327:-	0	-
#Deleted in new
chr7	66476258	66476327	ENSG00000179406.7|LINC00174|lncRNA|chr7:66476258:66476327:-	0	-
#Deleted in new
chr7	66476302	66476327	ENSG00000179406.7|LINC00174|lncRNA|chr7:66476302:66476327:-	0	-
#Deleted in new
chr7	66487948	66487990	ENSG00000179406.7|LINC00174|lncRNA|chr7:66487948:66487990:-	0	-
#Deleted in new
chr7	66487948	66488038	ENSG00000179406.7|LINC00174|lncRNA|chr7:66487948:66488038:-	0	-
#Partially deleted in new
chr7	66489937	66490059	ENSG00000179406.7|LINC00174|lncRNA|chr7:66489937:66490059:-	0	-
#Deleted in new
chr7	66491030	66491239	ENSG00000179406.7|LINC00174|lncRNA|chr7:66491030:66491239:-	0	-
#Deleted in new
chr7	66491030	66491456	ENSG00000179406.7|LINC00174|lncRNA|chr7:66491030:66491456:-	0	-
#Deleted in new
chr7	66491030	66491471	ENSG00000179406.7|LINC00174|lncRNA|chr7:66491030:66491471:-	0	-
#Deleted in new
chr7	66491030	66491616	ENSG00000179406.7|LINC00174|lncRNA|chr7:66491030:66491616:-	0	-
#Deleted in new
chr7	66491349	66491471	ENSG00000179406.7|LINC00174|lncRNA|chr7:66491349:66491471:-	0	-
#Deleted in new
chr7	66492008	66492339	ENSG00000179406.7|LINC00174|lncRNA|chr7:66492008:66492339:-	0	-
#Deleted in new
chr7	66492273	66492339	ENSG00000179406.7|LINC00174|lncRNA|chr7:66492273:66492339:-	0	-
#Deleted in new
chr7	66493215	66493355	ENSG00000179406.7|LINC00174|lncRNA|chr7:66493215:66493355:-	0	-
#Deleted in new
chr7	66493215	66493517	ENSG00000179406.7|LINC00174|lncRNA|chr7:66493215:66493517:-	0	-
#Deleted in new
chr7	66493215	66493566	ENSG00000179406.7|LINC00174|lncRNA|chr7:66493215:66493566:-	0	-
#Deleted in new
chr7	6663973	6664043	ENSG00000228010.5|AC073343.2|lncRNA|chr7:6663973:6664043:+	0	+
#Deleted in new
chr7	66640393	66640565	ENSG00000243335.9|KCTD7|pc|chr7:66640393:66640565:+	0	+
#Deleted in new
chr7	66647877	66649067	ENSG00000243335.9|KCTD7|pc|chr7:66647877:66649067:+	0	+
#Deleted in new
chr7	6665043	6665108	ENSG00000228010.5|AC073343.2|lncRNA|chr7:6665043:6665108:+	0	+
#Deleted in new
chr7	6665043	6665521	ENSG00000228010.5|AC073343.2|lncRNA|chr7:6665043:6665521:+	0	+
#Deleted in new
chr7	66665169	66665287	ENSG00000226824.6|AC006001.2|lncRNA|chr7:66665169:66665287:+	0	+
#Deleted in new
chr7	66668763	66668913	ENSG00000226824.6|AC006001.2|lncRNA|chr7:66668763:66668913:+	0	+
#Deleted in new
chr7	66669229	66669298	ENSG00000226824.6|AC006001.2|lncRNA|chr7:66669229:66669298:+	0	+
#Deleted in new
chr7	66712166	66712224	ENSG00000154710.16|RABGEF1|pc|chr7:66712166:66712224:+	0	+
#Deleted in new
chr7	66739828	66740385	ENSG00000272831.1|AC027644.3|lncRNA|chr7:66739828:66740385:-	0	-
#Deleted in new
chr7	66768830	66769025	ENSG00000154710.16|RABGEF1|pc|chr7:66768830:66769025:+	0	+
#Deleted in new
chr7	66770322	66770467	ENSG00000154710.16|RABGEF1|pc|chr7:66770322:66770467:+	0	+
#Deleted in new
chr7	66773690	66773810	ENSG00000154710.16|RABGEF1|pc|chr7:66773690:66773810:+	0	+
#Deleted in new
chr7	66773690	66773810	ENSG00000284461.1|RABGEF1|pc|chr7:66773690:66773810:+	0	+
#Deleted in new
chr7	66807837	66808064	ENSG00000154710.16|RABGEF1|pc|chr7:66807837:66808064:+	0	+
#Deleted in new
chr7	66902856	66906297	ENSG00000273142.1|AC073335.2|lncRNA|chr7:66902856:66906297:+	0	+
#Deleted in new
chr7	66921843	66922246	ENSG00000106609.16|TMEM248|pc|chr7:66921843:66922246:+	0	+
#Deleted in new
chr7	66922148	66922246	ENSG00000106609.16|TMEM248|pc|chr7:66922148:66922246:+	0	+
#Deleted in new
chr7	66930614	66930714	ENSG00000106609.16|TMEM248|pc|chr7:66930614:66930714:+	0	+
#Deleted in new
chr7	66930623	66930868	ENSG00000106609.16|TMEM248|pc|chr7:66930623:66930868:+	0	+
#Partially deleted in new
chr7	66996814	66996982	ENSG00000198874.12|TYW1|pc|chr7:66996814:66996982:+	0	+
#Partially deleted in new
chr7	66996819	66996982	ENSG00000198874.12|TYW1|pc|chr7:66996819:66996982:+	0	+
#Partially deleted in new
chr7	66996844	66996982	ENSG00000198874.12|TYW1|pc|chr7:66996844:66996982:+	0	+
#Partially deleted in new
chr7	66996852	66996982	ENSG00000198874.12|TYW1|pc|chr7:66996852:66996982:+	0	+
#Deleted in new
chr7	6700820	6700914	ENSG00000164631.18|ZNF12|pc|chr7:6700820:6700914:-	0	-
#Deleted in new
chr7	6704159	6704311	ENSG00000164631.18|ZNF12|pc|chr7:6704159:6704311:-	0	-
#Duplicated in new
chr7	67049948	67050066	ENSG00000198874.12|TYW1|pc|chr7:67049948:67050066:+	0	+
#Deleted in new
chr7	6706431	6706536	ENSG00000164631.18|ZNF12|pc|chr7:6706431:6706536:-	0	-
#Deleted in new
chr7	67067137	67067403	ENSG00000198874.12|TYW1|pc|chr7:67067137:67067403:+	0	+
#Deleted in new
chr7	67067284	67067334	ENSG00000198874.12|TYW1|pc|chr7:67067284:67067334:+	0	+
#Deleted in new
chr7	67067284	67067403	ENSG00000198874.12|TYW1|pc|chr7:67067284:67067403:+	0	+
#Deleted in new
chr7	67067335	67067403	ENSG00000198874.12|TYW1|pc|chr7:67067335:67067403:+	0	+
#Deleted in new
chr7	6708300	6708395	ENSG00000228010.5|AC073343.2|lncRNA|chr7:6708300:6708395:+	0	+
#Deleted in new
chr7	67083429	67083539	ENSG00000198874.12|TYW1|pc|chr7:67083429:67083539:+	0	+
#Deleted in new
chr7	6708567	6708901	ENSG00000228010.5|AC073343.2|lncRNA|chr7:6708567:6708901:+	0	+
#Deleted in new
chr7	67339449	67339573	ENSG00000235475.1|LINC01372|lncRNA|chr7:67339449:67339573:+	0	+
#Deleted in new
chr7	67339796	67340024	ENSG00000235475.1|LINC01372|lncRNA|chr7:67339796:67340024:+	0	+
#Deleted in new
chr7	6757356	6757476	ENSG00000169402.15|RSPH10B2|pc|chr7:6757356:6757476:+	0	+
#Partially deleted in new
chr7	6761313	6761384	ENSG00000169402.15|RSPH10B2|pc|chr7:6761313:6761384:+	0	+
#Deleted in new
chr7	67691057	67691525	ENSG00000233423.1|AC005482.1|lncRNA|chr7:67691057:67691525:-	0	-
#Deleted in new
chr7	67696922	67697029	ENSG00000233423.1|AC005482.1|lncRNA|chr7:67696922:67697029:-	0	-
#Partially deleted in new
chr7	6771182	6771691	ENSG00000169402.15|RSPH10B2|pc|chr7:6771182:6771691:+	0	+
#Deleted in new
chr7	6794133	6794535	ENSG00000146574.15|CCZ1B|pc|chr7:6794133:6794535:-	0	-
#Deleted in new
chr7	6794140	6794535	ENSG00000146574.15|CCZ1B|pc|chr7:6794140:6794535:-	0	-
#Partially deleted in new
chr7	6796835	6796876	ENSG00000146574.15|CCZ1B|pc|chr7:6796835:6796876:-	0	-
#Partially deleted in new
chr7	6798761	6798893	ENSG00000146574.15|CCZ1B|pc|chr7:6798761:6798893:-	0	-
#Deleted in new
chr7	68020252	68020340	ENSG00000225209.1|AC092637.1|lncRNA|chr7:68020252:68020340:+	0	+
#Deleted in new
chr7	68023611	68023660	ENSG00000225209.1|AC092637.1|lncRNA|chr7:68023611:68023660:+	0	+
#Deleted in new
chr7	68024495	68024565	ENSG00000225209.1|AC092637.1|lncRNA|chr7:68024495:68024565:+	0	+
#Deleted in new
chr7	68031563	68031692	ENSG00000225209.1|AC092637.1|lncRNA|chr7:68031563:68031692:+	0	+
#Deleted in new
chr7	68032590	68032690	ENSG00000225209.1|AC092637.1|lncRNA|chr7:68032590:68032690:+	0	+
#Deleted in new
chr7	68091222	68091325	ENSG00000236531.2|AC006013.1|lncRNA|chr7:68091222:68091325:+	0	+
#Deleted in new
chr7	68118554	68119209	ENSG00000236531.2|AC006013.1|lncRNA|chr7:68118554:68119209:+	0	+
#Deleted in new
chr7	68150282	68150323	ENSG00000226829.1|AC093655.1|lncRNA|chr7:68150282:68150323:-	0	-
#Deleted in new
chr7	68155028	68155184	ENSG00000226829.1|AC093655.1|lncRNA|chr7:68155028:68155184:-	0	-
#Deleted in new
chr7	68184789	68184916	ENSG00000226829.1|AC093655.1|lncRNA|chr7:68184789:68184916:-	0	-
#Deleted in new
chr7	68236298	68236436	ENSG00000226829.1|AC093655.1|lncRNA|chr7:68236298:68236436:-	0	-
#Deleted in new
chr7	69040151	69040265	ENSG00000233689.1|AC104688.1|lncRNA|chr7:69040151:69040265:+	0	+
#Deleted in new
chr7	69046664	69046803	ENSG00000233689.1|AC104688.1|lncRNA|chr7:69046664:69046803:+	0	+
#Deleted in new
chr7	691539	691794	ENSG00000188191.14|PRKAR1B|pc|chr7:691539:691794:-	0	-
#Deleted in new
chr7	69187832	69188030	ENSG00000236839.1|AC069280.1|lncRNA|chr7:69187832:69188030:-	0	-
#Deleted in new
chr7	69188127	69188177	ENSG00000236839.1|AC069280.1|lncRNA|chr7:69188127:69188177:-	0	-
#Deleted in new
chr7	69189127	69189318	ENSG00000236839.1|AC069280.1|lncRNA|chr7:69189127:69189318:-	0	-
#Deleted in new
chr7	69224695	69224807	ENSG00000225718.1|AC092100.1|lncRNA|chr7:69224695:69224807:-	0	-
#Deleted in new
chr7	69271964	69272006	ENSG00000225718.1|AC092100.1|lncRNA|chr7:69271964:69272006:-	0	-
#Deleted in new
chr7	69271964	69272398	ENSG00000225718.1|AC092100.1|lncRNA|chr7:69271964:69272398:-	0	-
#Deleted in new
chr7	69359081	69359462	ENSG00000225718.1|AC092100.1|lncRNA|chr7:69359081:69359462:-	0	-
#Partially deleted in new
chr7	69388165	69388333	ENSG00000225718.1|AC092100.1|lncRNA|chr7:69388165:69388333:-	0	-
#Deleted in new
chr7	696712	697102	ENSG00000188191.14|PRKAR1B|pc|chr7:696712:697102:-	0	-
#Deleted in new
chr7	70729138	70729221	ENSG00000158321.15|AUTS2|pc|chr7:70729138:70729221:+	0	+
#Deleted in new
chr7	70785408	70785472	ENSG00000158321.15|AUTS2|pc|chr7:70785408:70785472:+	0	+
#Deleted in new
chr7	70971	71571	ENSG00000232325.4|AC093627.1|lncRNA|chr7:70971:71571:-	0	-
#Deleted in new
chr7	71283995	71284635	ENSG00000185274.11|GALNT17|pc|chr7:71283995:71284635:+	0	+
#Deleted in new
chr7	716618	716846	ENSG00000188191.14|PRKAR1B|pc|chr7:716618:716846:-	0	-
#Deleted in new
chr7	71676	71833	ENSG00000232325.4|AC093627.1|lncRNA|chr7:71676:71833:-	0	-
#Deleted in new
chr7	7209426	7209566	ENSG00000106392.10|C1GALT1|pc|chr7:7209426:7209566:+	0	+
#Deleted in new
chr7	7210445	7210567	ENSG00000106392.10|C1GALT1|pc|chr7:7210445:7210567:+	0	+
#Partially deleted in new
chr7	7234302	7235297	ENSG00000106392.10|C1GALT1|pc|chr7:7234302:7235297:+	0	+
#Deleted in new
chr7	72412057	72412275	ENSG00000183166.10|CALN1|pc|chr7:72412057:72412275:-	0	-
#Deleted in new
chr7	72412057	72412373	ENSG00000183166.10|CALN1|pc|chr7:72412057:72412373:-	0	-
#Deleted in new
chr7	7255153	7255178	ENSG00000230825.1|AC005532.1|lncRNA|chr7:7255153:7255178:+	0	+
#Deleted in new
chr7	72558743	72558888	ENSG00000277149.4|TYW1B|pc|chr7:72558743:72558888:-	0	-
#Deleted in new
chr7	7266907	7267442	ENSG00000230825.1|AC005532.1|lncRNA|chr7:7266907:7267442:+	0	+
#Deleted in new
chr7	7267236	7267442	ENSG00000230825.1|AC005532.1|lncRNA|chr7:7267236:7267442:+	0	+
#Deleted in new
chr7	7271407	7271844	ENSG00000230825.1|AC005532.1|lncRNA|chr7:7271407:7271844:+	0	+
#Deleted in new
chr7	727589	727650	ENSG00000188191.14|PRKAR1B|pc|chr7:727589:727650:-	0	-
#Deleted in new
chr7	72828071	72828174	ENSG00000277149.4|TYW1B|pc|chr7:72828071:72828174:-	0	-
#Deleted in new
chr7	72828071	72828186	ENSG00000277149.4|TYW1B|pc|chr7:72828071:72828186:-	0	-
#Deleted in new
chr7	72828071	72828198	ENSG00000277149.4|TYW1B|pc|chr7:72828071:72828198:-	0	-
#Deleted in new
chr7	72913764	72913828	ENSG00000196313.11|POM121|pc|chr7:72913764:72913828:+	0	+
#Partially deleted in new
chr7	72924417	72925125	ENSG00000272843.1|AC211476.2|lncRNA|chr7:72924417:72925125:-	0	-
#Partially deleted in new
chr7	72969284	72969466	ENSG00000155428.12|TRIM74|pc|chr7:72969284:72969466:-	0	-
#Deleted in new
chr7	73321898	73321981	ENSG00000146755.10|TRIM50|pc|chr7:73321898:73321981:-	0	-
#Deleted in new
chr7	73327899	73327954	ENSG00000146755.10|TRIM50|pc|chr7:73327899:73327954:-	0	-
#Partially deleted in new
chr7	73327899	73328082	ENSG00000146755.10|TRIM50|pc|chr7:73327899:73328082:-	0	-
#Deleted in new
chr7	73336758	73337045	ENSG00000077800.11|FKBP6|pc|chr7:73336758:73337045:+	0	+
#Partially deleted in new
chr7	73358180	73358546	ENSG00000077800.11|FKBP6|pc|chr7:73358180:73358546:+	0	+
#Deleted in new
chr7	73553547	73553669	ENSG00000106635.7|BCL7B|pc|chr7:73553547:73553669:-	0	-
#Deleted in new
chr7	73557040	73557112	ENSG00000106635.7|BCL7B|pc|chr7:73557040:73557112:-	0	-
#Partially deleted in new
chr7	73557040	73557211	ENSG00000106635.7|BCL7B|pc|chr7:73557040:73557211:-	0	-
#Partially deleted in new
chr7	73557040	73557241	ENSG00000106635.7|BCL7B|pc|chr7:73557040:73557241:-	0	-
#Partially deleted in new
chr7	7356202	7357095	ENSG00000215018.9|COL28A1|pc|chr7:7356202:7357095:-	0	-
#Deleted in new
chr7	7356567	7357020	ENSG00000215018.9|COL28A1|pc|chr7:7356567:7357020:-	0	-
#Deleted in new
chr7	73571981	73572035	ENSG00000106638.15|TBL2|pc|chr7:73571981:73572035:-	0	-
#Partially deleted in new
chr7	73609261	73611502	ENSG00000274080.1|AC005089.1|lncRNA|chr7:73609261:73611502:-	0	-
#Partially deleted in new
chr7	73694113	73697694	ENSG00000071462.11|BUD23|pc|chr7:73694113:73697694:+	0	+
#Deleted in new
chr7	73696405	73696740	ENSG00000071462.11|BUD23|pc|chr7:73696405:73696740:+	0	+
#Deleted in new
chr7	73697465	73697516	ENSG00000071462.11|BUD23|pc|chr7:73697465:73697516:+	0	+
#Deleted in new
chr7	73716580	73716734	ENSG00000106089.11|STX1A|pc|chr7:73716580:73716734:-	0	-
#Deleted in new
chr7	73799541	73799829	ENSG00000189143.9|CLDN4|pc|chr7:73799541:73799829:+	0	+
#Deleted in new
chr7	73829201	73829366	ENSG00000189143.9|CLDN4|pc|chr7:73829201:73829366:+	0	+
#Deleted in new
chr7	74036554	74036584	ENSG00000049540.16|ELN|pc|chr7:74036554:74036584:+	0	+
#Deleted in new
chr7	74052293	74052561	ENSG00000049540.16|ELN|pc|chr7:74052293:74052561:+	0	+
#Deleted in new
chr7	74063152	74063224	ENSG00000049540.16|ELN|pc|chr7:74063152:74063224:+	0	+
#Deleted in new
chr7	74063309	74063369	ENSG00000049540.16|ELN|pc|chr7:74063309:74063369:+	0	+
#Deleted in new
chr7	74063620	74063695	ENSG00000049540.16|ELN|pc|chr7:74063620:74063695:+	0	+
#Partially deleted in new
chr7	74108904	74111440	ENSG00000106683.14|LIMK1|pc|chr7:74108904:74111440:+	0	+
#Deleted in new
chr7	74183821	74183921	ENSG00000106682.14|EIF4H|pc|chr7:74183821:74183921:+	0	+
#Deleted in new
chr7	74199651	74199685	ENSG00000086730.16|LAT2|pc|chr7:74199651:74199685:+	0	+
#Deleted in new
chr7	74214821	74214917	ENSG00000086730.16|LAT2|pc|chr7:74214821:74214917:+	0	+
#Partially deleted in new
chr7	74214821	74214940	ENSG00000086730.16|LAT2|pc|chr7:74214821:74214940:+	0	+
#Deleted in new
chr7	74224942	74226508	ENSG00000086730.16|LAT2|pc|chr7:74224942:74226508:+	0	+
#Deleted in new
chr7	74228943	74229072	ENSG00000086730.16|LAT2|pc|chr7:74228943:74229072:+	0	+
#Deleted in new
chr7	74228943	74229831	ENSG00000086730.16|LAT2|pc|chr7:74228943:74229831:+	0	+
#Deleted in new
chr7	74228943	74229834	ENSG00000086730.16|LAT2|pc|chr7:74228943:74229834:+	0	+
#Partially deleted in new
chr7	74231498	74232216	ENSG00000049541.10|RFC2|pc|chr7:74231498:74232216:-	0	-
#Partially deleted in new
chr7	74231503	74232216	ENSG00000049541.10|RFC2|pc|chr7:74231503:74232216:-	0	-
#Partially deleted in new
chr7	74231536	74232216	ENSG00000049541.10|RFC2|pc|chr7:74231536:74232216:-	0	-
#Deleted in new
chr7	74233774	74233894	ENSG00000049541.10|RFC2|pc|chr7:74233774:74233894:-	0	-
#Deleted in new
chr7	74253598	74253717	ENSG00000049541.10|RFC2|pc|chr7:74253598:74253717:-	0	-
#Deleted in new
chr7	7431217	7431646	ENSG00000215018.9|COL28A1|pc|chr7:7431217:7431646:-	0	-
#Deleted in new
chr7	74381581	74381630	ENSG00000106665.15|CLIP2|pc|chr7:74381581:74381630:+	0	+
#Partially deleted in new
chr7	74505991	74507676	ENSG00000006704.10|GTF2IRD1|pc|chr7:74505991:74507676:+	0	+
#Deleted in new
chr7	74684656	74684904	ENSG00000263001.5|GTF2I|pc|chr7:74684656:74684904:+	0	+
#Partially deleted in new
chr7	74699459	74700380	ENSG00000232729.7|AC211433.1|lncRNA|chr7:74699459:74700380:-	0	-
#Deleted in new
chr7	74722734	74722788	ENSG00000232729.7|AC211433.1|lncRNA|chr7:74722734:74722788:-	0	-
#Deleted in new
chr7	74726443	74727522	ENSG00000232729.7|AC211433.1|lncRNA|chr7:74726443:74727522:-	0	-
#Deleted in new
chr7	74726949	74727522	ENSG00000232729.7|AC211433.1|lncRNA|chr7:74726949:74727522:-	0	-
#Deleted in new
chr7	74727401	74727522	ENSG00000232729.7|AC211433.1|lncRNA|chr7:74727401:74727522:-	0	-
#Deleted in new
chr7	74727723	74727883	ENSG00000232729.7|AC211433.1|lncRNA|chr7:74727723:74727883:-	0	-
#Deleted in new
chr7	74727723	74727886	ENSG00000232729.7|AC211433.1|lncRNA|chr7:74727723:74727886:-	0	-
#Deleted in new
chr7	74728002	74728068	ENSG00000263001.5|GTF2I|pc|chr7:74728002:74728068:+	0	+
#Partially deleted in new
chr7	74728704	74728765	ENSG00000232729.7|AC211433.1|lncRNA|chr7:74728704:74728765:-	0	-
#Partially deleted in new
chr7	74733595	74733981	ENSG00000263001.5|GTF2I|pc|chr7:74733595:74733981:+	0	+
#Deleted in new
chr7	74739805	74740071	ENSG00000263001.5|GTF2I|pc|chr7:74739805:74740071:+	0	+
#Deleted in new
chr7	74744138	74744250	ENSG00000263001.5|GTF2I|pc|chr7:74744138:74744250:+	0	+
#Deleted in new
chr7	74744343	74744508	ENSG00000263001.5|GTF2I|pc|chr7:74744343:74744508:+	0	+
#Partially deleted in new
chr7	74754095	74755537	ENSG00000263001.5|GTF2I|pc|chr7:74754095:74755537:+	0	+
#Partially deleted in new
chr7	74755239	74756861	ENSG00000263001.5|GTF2I|pc|chr7:74755239:74756861:+	0	+
#Partially deleted in new
chr7	74755508	74755878	ENSG00000263001.5|GTF2I|pc|chr7:74755508:74755878:+	0	+
#Deleted in new
chr7	74776808	74776853	ENSG00000158517.13|NCF1|pc|chr7:74776808:74776853:+	0	+
#Deleted in new
chr7	74777553	74777701	ENSG00000158517.13|NCF1|pc|chr7:74777553:74777701:+	0	+
#Deleted in new
chr7	74778306	74778399	ENSG00000158517.13|NCF1|pc|chr7:74778306:74778399:+	0	+
#Deleted in new
chr7	74780156	74780226	ENSG00000158517.13|NCF1|pc|chr7:74780156:74780226:+	0	+
#Deleted in new
chr7	74781551	74781622	ENSG00000158517.13|NCF1|pc|chr7:74781551:74781622:+	0	+
#Deleted in new
chr7	74796143	74798265	ENSG00000196275.13|GTF2IRD2|pc|chr7:74796143:74798265:-	0	-
#Deleted in new
chr7	74799029	74799449	ENSG00000196275.13|GTF2IRD2|pc|chr7:74799029:74799449:-	0	-
#Deleted in new
chr7	74799452	74799517	ENSG00000196275.13|GTF2IRD2|pc|chr7:74799452:74799517:-	0	-
#Partially deleted in new
chr7	74818806	74819597	ENSG00000196275.13|GTF2IRD2|pc|chr7:74818806:74819597:-	0	-
#Partially deleted in new
chr7	74819968	74821224	ENSG00000196275.13|GTF2IRD2|pc|chr7:74819968:74821224:-	0	-
#Partially deleted in new
chr7	74821533	74822807	ENSG00000196275.13|GTF2IRD2|pc|chr7:74821533:74822807:-	0	-
#Deleted in new
chr7	74851366	74851529	ENSG00000196275.13|GTF2IRD2|pc|chr7:74851366:74851529:-	0	-
#Deleted in new
chr7	74851366	74851536	ENSG00000196275.13|GTF2IRD2|pc|chr7:74851366:74851536:-	0	-
#Deleted in new
chr7	74851366	74851540	ENSG00000196275.13|GTF2IRD2|pc|chr7:74851366:74851540:-	0	-
#Deleted in new
chr7	74851366	74851551	ENSG00000196275.13|GTF2IRD2|pc|chr7:74851366:74851551:-	0	-
#Deleted in new
chr7	75056516	75056724	ENSG00000274523.4|RCC1L|pc|chr7:75056516:75056724:-	0	-
#Deleted in new
chr7	75073992	75074228	ENSG00000274523.4|RCC1L|pc|chr7:75073992:75074228:-	0	-
#Deleted in new
chr7	750867	750953	ENSG00000164818.15|DNAAF5|pc|chr7:750867:750953:+	0	+
#Deleted in new
chr7	75092572	75092765	ENSG00000174428.16|GTF2IRD2B|pc|chr7:75092572:75092765:+	0	+
#Deleted in new
chr7	75092580	75092765	ENSG00000174428.16|GTF2IRD2B|pc|chr7:75092580:75092765:+	0	+
#Deleted in new
chr7	75092591	75092765	ENSG00000174428.16|GTF2IRD2B|pc|chr7:75092591:75092765:+	0	+
#Deleted in new
chr7	75092599	75092765	ENSG00000174428.16|GTF2IRD2B|pc|chr7:75092599:75092765:+	0	+
#Deleted in new
chr7	75092611	75092765	ENSG00000174428.16|GTF2IRD2B|pc|chr7:75092611:75092765:+	0	+
#Deleted in new
chr7	75093850	75094141	ENSG00000174428.16|GTF2IRD2B|pc|chr7:75093850:75094141:+	0	+
#Deleted in new
chr7	75146443	75146508	ENSG00000174428.16|GTF2IRD2B|pc|chr7:75146443:75146508:+	0	+
#Deleted in new
chr7	75146443	75146950	ENSG00000174428.16|GTF2IRD2B|pc|chr7:75146443:75146950:+	0	+
#Deleted in new
chr7	75146511	75146931	ENSG00000174428.16|GTF2IRD2B|pc|chr7:75146511:75146931:+	0	+
#Deleted in new
chr7	75147693	75149817	ENSG00000174428.16|GTF2IRD2B|pc|chr7:75147693:75149817:+	0	+
#Deleted in new
chr7	75225432	75225740	ENSG00000277675.1|AC211486.5|lncRNA|chr7:75225432:75225740:+	0	+
#Deleted in new
chr7	75232376	75232468	ENSG00000277675.1|AC211486.5|lncRNA|chr7:75232376:75232468:+	0	+
#Deleted in new
chr7	75232927	75233014	ENSG00000263081.1|AC211486.2|lncRNA|chr7:75232927:75233014:+	0	+
#Partially deleted in new
chr7	75395628	75395810	ENSG00000178809.11|TRIM73|pc|chr7:75395628:75395810:+	0	+
#Deleted in new
chr7	75395755	75395810	ENSG00000178809.11|TRIM73|pc|chr7:75395755:75395810:+	0	+
#Deleted in new
chr7	75410117	75410225	ENSG00000178809.11|TRIM73|pc|chr7:75410117:75410225:+	0	+
#Partially deleted in new
chr7	75419319	75421285	ENSG00000272391.5|POM121C|pc|chr7:75419319:75421285:-	0	-
#Deleted in new
chr7	75440605	75440701	ENSG00000272391.5|POM121C|pc|chr7:75440605:75440701:-	0	-
#Deleted in new
chr7	7552158	7552440	ENSG00000272732.1|AC004982.1|lncRNA|chr7:7552158:7552440:-	0	-
#Deleted in new
chr7	7552461	7552922	ENSG00000272894.5|AC004982.2|lncRNA|chr7:7552461:7552922:-	0	-
#Deleted in new
chr7	7552736	7552922	ENSG00000272894.5|AC004982.2|lncRNA|chr7:7552736:7552922:-	0	-
#Deleted in new
chr7	7552852	7552922	ENSG00000272894.5|AC004982.2|lncRNA|chr7:7552852:7552922:-	0	-
#Deleted in new
chr7	7554687	7554749	ENSG00000272894.5|AC004982.2|lncRNA|chr7:7554687:7554749:-	0	-
#Deleted in new
chr7	7555155	7555189	ENSG00000272894.5|AC004982.2|lncRNA|chr7:7555155:7555189:-	0	-
#Partially deleted in new
chr7	75625088	75626970	ENSG00000279996.1|AC004491.1|lncRNA|chr7:75625088:75626970:-	0	-
#Deleted in new
chr7	7564236	7564326	ENSG00000272894.5|AC004982.2|lncRNA|chr7:7564236:7564326:-	0	-
#Deleted in new
chr7	75654412	75654696	ENSG00000127946.16|HIP1|pc|chr7:75654412:75654696:-	0	-
#Deleted in new
chr7	75789716	75789896	ENSG00000006606.8|CCL26|pc|chr7:75789716:75789896:-	0	-
#Deleted in new
chr7	75842601	75842749	ENSG00000005486.16|RHBDD2|pc|chr7:75842601:75842749:+	0	+
#Deleted in new
chr7	75878090	75878186	ENSG00000005486.16|RHBDD2|pc|chr7:75878090:75878186:+	0	+
#Deleted in new
chr7	75907575	75907631	ENSG00000127948.15|POR|pc|chr7:75907575:75907631:+	0	+
#Deleted in new
chr7	75915078	75915179	ENSG00000127948.15|POR|pc|chr7:75915078:75915179:+	0	+
#Deleted in new
chr7	75915148	75915179	ENSG00000127948.15|POR|pc|chr7:75915148:75915179:+	0	+
#Deleted in new
chr7	75915156	75915179	ENSG00000127948.15|POR|pc|chr7:75915156:75915179:+	0	+
#Deleted in new
chr7	75915156	75915666	ENSG00000127948.15|POR|pc|chr7:75915156:75915666:+	0	+
#Deleted in new
chr7	75915163	75915179	ENSG00000127948.15|POR|pc|chr7:75915163:75915179:+	0	+
#Deleted in new
chr7	75915173	75915209	ENSG00000127948.15|POR|pc|chr7:75915173:75915209:+	0	+
#Deleted in new
chr7	75915181	75915209	ENSG00000127948.15|POR|pc|chr7:75915181:75915209:+	0	+
#Deleted in new
chr7	75915660	75915767	ENSG00000127948.15|POR|pc|chr7:75915660:75915767:+	0	+
#Deleted in new
chr7	75918643	75918701	ENSG00000127948.15|POR|pc|chr7:75918643:75918701:+	0	+
#Deleted in new
chr7	75921160	75921251	ENSG00000127948.15|POR|pc|chr7:75921160:75921251:+	0	+
#Deleted in new
chr7	75945321	75945392	ENSG00000127948.15|POR|pc|chr7:75945321:75945392:+	0	+
#Deleted in new
chr7	75946771	75947244	ENSG00000127948.15|POR|pc|chr7:75946771:75947244:+	0	+
#Deleted in new
chr7	75970986	75971092	ENSG00000127948.15|POR|pc|chr7:75970986:75971092:+	0	+
#Partially deleted in new
chr7	75972412	75972764	ENSG00000127948.15|POR|pc|chr7:75972412:75972764:+	0	+
#Deleted in new
chr7	75998544	75999134	ENSG00000127952.16|STYXL1|pc|chr7:75998544:75999134:-	0	-
#Partially deleted in new
chr7	76043976	76045963	ENSG00000280388.1|AC006330.1|lncRNA|chr7:76043976:76045963:-	0	-
#Partially deleted in new
chr7	76047811	76047953	ENSG00000127952.16|STYXL1|pc|chr7:76047811:76047953:-	0	-
#Partially deleted in new
chr7	76047811	76047980	ENSG00000127952.16|STYXL1|pc|chr7:76047811:76047980:-	0	-
#Partially deleted in new
chr7	76047811	76047983	ENSG00000127952.16|STYXL1|pc|chr7:76047811:76047983:-	0	-
#Partially deleted in new
chr7	76047811	76047988	ENSG00000127952.16|STYXL1|pc|chr7:76047811:76047988:-	0	-
#Partially deleted in new
chr7	7605117	7606071	ENSG00000164654.15|MIOS|pc|chr7:7605117:7606071:+	0	+
#Partially deleted in new
chr7	76066278	76067506	ENSG00000146701.11|MDH2|pc|chr7:76066278:76067506:+	0	+
#Partially deleted in new
chr7	76066278	76067508	ENSG00000146701.11|MDH2|pc|chr7:76066278:76067508:+	0	+
#Partially deleted in new
chr7	7619871	7620543	ENSG00000272745.1|AC004948.1|lncRNA|chr7:7619871:7620543:+	0	+
#Partially deleted in new
chr7	76428637	76429633	ENSG00000188372.14|ZP3|pc|chr7:76428637:76429633:+	0	+
#Deleted in new
chr7	76474586	76474948	ENSG00000250614.1|AC005522.2|lncRNA|chr7:76474586:76474948:-	0	-
#Deleted in new
chr7	76478126	76478202	ENSG00000091073.19|DTX2|pc|chr7:76478126:76478202:+	0	+
#Deleted in new
chr7	76478765	76478856	ENSG00000250614.1|AC005522.2|lncRNA|chr7:76478765:76478856:-	0	-
#Deleted in new
chr7	76478974	76479120	ENSG00000091073.19|DTX2|pc|chr7:76478974:76479120:+	0	+
#Deleted in new
chr7	76501266	76501292	ENSG00000091073.19|DTX2|pc|chr7:76501266:76501292:+	0	+
#Deleted in new
chr7	76502808	76502989	ENSG00000091073.19|DTX2|pc|chr7:76502808:76502989:+	0	+
#Deleted in new
chr7	768474	769205	ENSG00000164818.15|DNAAF5|pc|chr7:768474:769205:+	0	+
#Deleted in new
chr7	7685829	7685998	ENSG00000106399.11|RPA3|pc|chr7:7685829:7685998:-	0	-
#Deleted in new
chr7	7689334	7689460	ENSG00000219545.11|UMAD1|pc|chr7:7689334:7689460:+	0	+
#Deleted in new
chr7	7692347	7692508	ENSG00000219545.11|UMAD1|pc|chr7:7692347:7692508:+	0	+
#Deleted in new
chr7	76972678	76973040	ENSG00000225703.1|AC114737.1|lncRNA|chr7:76972678:76973040:-	0	-
#Deleted in new
chr7	76976870	76976961	ENSG00000225703.1|AC114737.1|lncRNA|chr7:76976870:76976961:-	0	-
#Deleted in new
chr7	77006978	77007059	ENSG00000265479.6|DTX2P1-UPK3BP1-PMS2P11|lncRNA|chr7:77006978:77007059:+	0	+
#Deleted in new
chr7	77018908	77018997	ENSG00000265479.6|DTX2P1-UPK3BP1-PMS2P11|lncRNA|chr7:77018908:77018997:+	0	+
#Deleted in new
chr7	77037	77353	ENSG00000242611.2|AC093627.6|lncRNA|chr7:77037:77353:+	0	+
#Deleted in new
chr7	7715174	7715226	ENSG00000106399.11|RPA3|pc|chr7:7715174:7715226:-	0	-
#Deleted in new
chr7	77246339	77246487	ENSG00000250990.1|AC098851.1|lncRNA|chr7:77246339:77246487:-	0	-
#Deleted in new
chr7	77255325	77255475	ENSG00000250990.1|AC098851.1|lncRNA|chr7:77255325:77255475:-	0	-
#Deleted in new
chr7	77421766	77421864	ENSG00000273341.1|AC004921.1|lncRNA|chr7:77421766:77421864:+	0	+
#Deleted in new
chr7	77545751	77545797	ENSG00000127947.15|PTPN12|pc|chr7:77545751:77545797:+	0	+
#Deleted in new
chr7	77563935	77564195	ENSG00000127947.15|PTPN12|pc|chr7:77563935:77564195:+	0	+
#Deleted in new
chr7	77604878	77604935	ENSG00000127947.15|PTPN12|pc|chr7:77604878:77604935:+	0	+
#Deleted in new
chr7	77659092	77659318	ENSG00000214293.8|APTR|lncRNA|chr7:77659092:77659318:-	0	-
#Deleted in new
chr7	77661197	77661333	ENSG00000214293.8|APTR|lncRNA|chr7:77661197:77661333:-	0	-
#Deleted in new
chr7	77683942	77684333	ENSG00000214293.8|APTR|lncRNA|chr7:77683942:77684333:-	0	-
#Deleted in new
chr7	77684220	77684251	ENSG00000214293.8|APTR|lncRNA|chr7:77684220:77684251:-	0	-
#Deleted in new
chr7	77684784	77685328	ENSG00000214293.8|APTR|lncRNA|chr7:77684784:77685328:-	0	-
#Deleted in new
chr7	77685201	77685328	ENSG00000214293.8|APTR|lncRNA|chr7:77685201:77685328:-	0	-
#Deleted in new
chr7	778181	778685	ENSG00000164818.15|DNAAF5|pc|chr7:778181:778685:+	0	+
#Deleted in new
chr7	77854732	77854834	ENSG00000006576.16|PHTF2|pc|chr7:77854732:77854834:+	0	+
#Deleted in new
chr7	77906260	77906496	ENSG00000006576.16|PHTF2|pc|chr7:77906260:77906496:+	0	+
#Deleted in new
chr7	77907853	77907983	ENSG00000006576.16|PHTF2|pc|chr7:77907853:77907983:+	0	+
#Deleted in new
chr7	77990383	77990677	ENSG00000232756.1|AC004990.1|lncRNA|chr7:77990383:77990677:+	0	+
#Deleted in new
chr7	77990416	77990677	ENSG00000232756.1|AC004990.1|lncRNA|chr7:77990416:77990677:+	0	+
#Deleted in new
chr7	77990419	77990677	ENSG00000232756.1|AC004990.1|lncRNA|chr7:77990419:77990677:+	0	+
#Deleted in new
chr7	77994871	77994942	ENSG00000232756.1|AC004990.1|lncRNA|chr7:77994871:77994942:+	0	+
#Partially deleted in new
chr7	77994871	77995171	ENSG00000232756.1|AC004990.1|lncRNA|chr7:77994871:77995171:+	0	+
#Deleted in new
chr7	78034932	78035016	ENSG00000187391.19|MAGI2|pc|chr7:78034932:78035016:-	0	-
#Deleted in new
chr7	78035189	78035207	ENSG00000187391.19|MAGI2|pc|chr7:78035189:78035207:-	0	-
#Partially deleted in new
chr7	78134078	78134851	ENSG00000281008.1|AC004808.2|lncRNA|chr7:78134078:78134851:+	0	+
#Deleted in new
chr7	78518063	78519126	ENSG00000187391.19|MAGI2|pc|chr7:78518063:78519126:-	0	-
#Deleted in new
chr7	78518521	78519126	ENSG00000187391.19|MAGI2|pc|chr7:78518521:78519126:-	0	-
#Deleted in new
chr7	78518658	78519126	ENSG00000187391.19|MAGI2|pc|chr7:78518658:78519126:-	0	-
#Deleted in new
chr7	78519031	78519101	ENSG00000187391.19|MAGI2|pc|chr7:78519031:78519101:-	0	-
#Partially deleted in new
chr7	785516	786475	ENSG00000164818.15|DNAAF5|pc|chr7:785516:786475:+	0	+
#Deleted in new
chr7	78567948	78568004	ENSG00000187391.19|MAGI2|pc|chr7:78567948:78568004:-	0	-
#Deleted in new
chr7	78567948	78568198	ENSG00000187391.19|MAGI2|pc|chr7:78567948:78568198:-	0	-
#Deleted in new
chr7	78568094	78568364	ENSG00000187391.19|MAGI2|pc|chr7:78568094:78568364:-	0	-
#Deleted in new
chr7	78583420	78583494	ENSG00000187391.19|MAGI2|pc|chr7:78583420:78583494:-	0	-
#Partially deleted in new
chr7	78614365	78619003	ENSG00000187391.19|MAGI2|pc|chr7:78614365:78619003:-	0	-
#Deleted in new
chr7	78939849	78939884	ENSG00000251276.1|MAGI2-AS1|lncRNA|chr7:78939849:78939884:+	0	+
#Deleted in new
chr7	79172930	79172985	ENSG00000281120.1|AC006355.2|lncRNA|chr7:79172930:79172985:+	0	+
#Deleted in new
chr7	79458389	79458730	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79458389:79458730:+	0	+
#Deleted in new
chr7	79458658	79458730	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79458658:79458730:+	0	+
#Deleted in new
chr7	79459406	79459421	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79459406:79459421:+	0	+
#Deleted in new
chr7	79459406	79459453	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79459406:79459453:+	0	+
#Deleted in new
chr7	79459535	79459600	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79459535:79459600:+	0	+
#Deleted in new
chr7	79459535	79459625	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79459535:79459625:+	0	+
#Deleted in new
chr7	79459535	79459630	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79459535:79459630:+	0	+
#Deleted in new
chr7	79459535	79459637	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79459535:79459637:+	0	+
#Deleted in new
chr7	79459535	79459640	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79459535:79459640:+	0	+
#Deleted in new
chr7	79459535	79459706	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79459535:79459706:+	0	+
#Deleted in new
chr7	79459535	79459712	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79459535:79459712:+	0	+
#Deleted in new
chr7	79459535	79459769	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79459535:79459769:+	0	+
#Deleted in new
chr7	79459535	79459839	ENSG00000234456.7|MAGI2-AS3|lncRNA|chr7:79459535:79459839:+	0	+
#Partially deleted in new
chr7	7958182	7958618	ENSG00000233108.1|AC006042.2|lncRNA|chr7:7958182:7958618:-	0	-
#Deleted in new
chr7	80129	81178	ENSG00000242611.2|AC093627.6|lncRNA|chr7:80129:81178:+	0	+
#Deleted in new
chr7	80246408	80246502	ENSG00000234223.2|AC003988.1|lncRNA|chr7:80246408:80246502:-	0	-
#Deleted in new
chr7	8024714	8024814	ENSG00000106415.12|GLCCI1|pc|chr7:8024714:8024814:+	0	+
#Deleted in new
chr7	80248731	80248866	ENSG00000234223.2|AC003988.1|lncRNA|chr7:80248731:80248866:-	0	-
#Deleted in new
chr7	80325489	80325588	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80325489:80325588:-	0	-
#Deleted in new
chr7	80330186	80330527	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80330186:80330527:-	0	-
#Deleted in new
chr7	80330194	80330527	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80330194:80330527:-	0	-
#Deleted in new
chr7	80330195	80330527	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80330195:80330527:-	0	-
#Deleted in new
chr7	80331209	80331368	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80331209:80331368:-	0	-
#Deleted in new
chr7	80331585	80331667	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80331585:80331667:-	0	-
#Deleted in new
chr7	80355006	80355146	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80355006:80355146:-	0	-
#Deleted in new
chr7	80360523	80360645	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80360523:80360645:-	0	-
#Deleted in new
chr7	80361468	80361511	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80361468:80361511:-	0	-
#Deleted in new
chr7	80373811	80373834	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80373811:80373834:-	0	-
#Deleted in new
chr7	80373811	80373862	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80373811:80373862:-	0	-
#Deleted in new
chr7	80373811	80373877	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80373811:80373877:-	0	-
#Deleted in new
chr7	80373811	80373887	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80373811:80373887:-	0	-
#Deleted in new
chr7	80373811	80373990	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80373811:80373990:-	0	-
#Deleted in new
chr7	80373815	80373887	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80373815:80373887:-	0	-
#Deleted in new
chr7	80373838	80373990	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80373838:80373990:-	0	-
#Deleted in new
chr7	80373839	80373990	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80373839:80373990:-	0	-
#Deleted in new
chr7	80373854	80373990	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80373854:80373990:-	0	-
#Deleted in new
chr7	80373861	80373990	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80373861:80373990:-	0	-
#Deleted in new
chr7	80380294	80380446	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80380294:80380446:-	0	-
#Deleted in new
chr7	80380294	80380474	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80380294:80380474:-	0	-
#Deleted in new
chr7	80380294	80380555	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80380294:80380555:-	0	-
#Deleted in new
chr7	80381850	80382060	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80381850:80382060:-	0	-
#Deleted in new
chr7	80383902	80384124	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80383902:80384124:-	0	-
#Deleted in new
chr7	80383979	80384124	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80383979:80384124:-	0	-
#Deleted in new
chr7	80384047	80384105	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80384047:80384105:-	0	-
#Deleted in new
chr7	80384047	80384124	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80384047:80384124:-	0	-
#Deleted in new
chr7	80384047	80384127	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80384047:80384127:-	0	-
#Deleted in new
chr7	80384848	80384979	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80384848:80384979:-	0	-
#Deleted in new
chr7	80391428	80391453	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80391428:80391453:-	0	-
#Deleted in new
chr7	80391428	80391455	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80391428:80391455:-	0	-
#Deleted in new
chr7	80391447	80391474	ENSG00000232667.10|AC004862.1|lncRNA|chr7:80391447:80391474:-	0	-
#Deleted in new
chr7	80486466	80486587	ENSG00000135218.17|CD36|pc|chr7:80486466:80486587:+	0	+
#Deleted in new
chr7	80546190	80546267	ENSG00000135218.17|CD36|pc|chr7:80546190:80546267:+	0	+
#Deleted in new
chr7	8055731	8055774	ENSG00000106415.12|GLCCI1|pc|chr7:8055731:8055774:+	0	+
#Deleted in new
chr7	8078611	8078742	ENSG00000106415.12|GLCCI1|pc|chr7:8078611:8078742:+	0	+
#Deleted in new
chr7	80815948	80816224	ENSG00000075223.13|SEMA3C|pc|chr7:80815948:80816224:-	0	-
#Deleted in new
chr7	80915688	80915733	ENSG00000075223.13|SEMA3C|pc|chr7:80915688:80915733:-	0	-
#Deleted in new
chr7	80922264	80922359	ENSG00000075223.13|SEMA3C|pc|chr7:80922264:80922359:-	0	-
#Deleted in new
chr7	8094147	8094272	ENSG00000106415.12|GLCCI1|pc|chr7:8094147:8094272:+	0	+
#Deleted in new
chr7	80972515	80974724	ENSG00000279326.1|AC004972.1|lncRNA|chr7:80972515:80974724:-	0	-
#Deleted in new
chr7	81189904	81189976	ENSG00000237896.6|AC005008.2|lncRNA|chr7:81189904:81189976:+	0	+
#Deleted in new
chr7	81190067	81190390	ENSG00000237896.6|AC005008.2|lncRNA|chr7:81190067:81190390:+	0	+
#Deleted in new
chr7	81198889	81199115	ENSG00000237896.6|AC005008.2|lncRNA|chr7:81198889:81199115:+	0	+
#Deleted in new
chr7	817279	817499	ENSG00000164828.17|SUN1|pc|chr7:817279:817499:+	0	+
#Deleted in new
chr7	82009176	82009262	ENSG00000223770.5|AC006145.1|lncRNA|chr7:82009176:82009262:+	0	+
#Deleted in new
chr7	82009191	82009262	ENSG00000223770.5|AC006145.1|lncRNA|chr7:82009191:82009262:+	0	+
#Deleted in new
chr7	82023842	82023897	ENSG00000223770.5|AC006145.1|lncRNA|chr7:82023842:82023897:+	0	+
#Deleted in new
chr7	82027654	82028343	ENSG00000223770.5|AC006145.1|lncRNA|chr7:82027654:82028343:+	0	+
#Deleted in new
chr7	82027654	82029955	ENSG00000223770.5|AC006145.1|lncRNA|chr7:82027654:82029955:+	0	+
#Deleted in new
chr7	8227637	8227851	ENSG00000003147.17|ICA1|pc|chr7:8227637:8227851:-	0	-
#Deleted in new
chr7	82343053	82343236	ENSG00000153956.15|CACNA2D1|pc|chr7:82343053:82343236:-	0	-
#Deleted in new
chr7	82868106	82868195	ENSG00000186472.19|PCLO|pc|chr7:82868106:82868195:-	0	-
#Deleted in new
chr7	82894396	82894454	ENSG00000186472.19|PCLO|pc|chr7:82894396:82894454:-	0	-
#Deleted in new
chr7	8303740	8303796	ENSG00000272328.1|AC007128.2|lncRNA|chr7:8303740:8303796:+	0	+
#Deleted in new
chr7	8303753	8304155	ENSG00000272328.1|AC007128.2|lncRNA|chr7:8303753:8304155:+	0	+
#Deleted in new
chr7	831921	832101	ENSG00000164828.17|SUN1|pc|chr7:831921:832101:+	0	+
#Deleted in new
chr7	832019	832101	ENSG00000164828.17|SUN1|pc|chr7:832019:832101:+	0	+
#Deleted in new
chr7	832954	833229	ENSG00000164828.17|SUN1|pc|chr7:832954:833229:+	0	+
#Deleted in new
chr7	83362150	83362266	ENSG00000235503.2|AC079799.1|lncRNA|chr7:83362150:83362266:+	0	+
#Deleted in new
chr7	8340382	8340523	ENSG00000272328.1|AC007128.2|lncRNA|chr7:8340382:8340523:+	0	+
#Deleted in new
chr7	8340382	8340556	ENSG00000229970.3|AC007128.1|lncRNA|chr7:8340382:8340556:+	0	+
#Deleted in new
chr7	8340382	8340556	ENSG00000272328.1|AC007128.2|lncRNA|chr7:8340382:8340556:+	0	+
#Deleted in new
chr7	83616611	83616712	ENSG00000170381.12|SEMA3E|pc|chr7:83616611:83616712:-	0	-
#Deleted in new
chr7	84489095	84489182	ENSG00000075213.10|SEMA3A|pc|chr7:84489095:84489182:-	0	-
#Partially deleted in new
chr7	84570978	84574843	ENSG00000235139.2|AC003984.1|lncRNA|chr7:84570978:84574843:+	0	+
#Deleted in new
chr7	84584150	84584322	ENSG00000235139.2|AC003984.1|lncRNA|chr7:84584150:84584322:+	0	+
#Deleted in new
chr7	84939334	84940256	ENSG00000280325.1|AC074183.2|lncRNA|chr7:84939334:84940256:-	0	-
#Deleted in new
chr7	84939348	84939632	ENSG00000232019.1|AC074183.1|lncRNA|chr7:84939348:84939632:-	0	-
#Deleted in new
chr7	84939747	84940245	ENSG00000232019.1|AC074183.1|lncRNA|chr7:84939747:84940245:-	0	-
#Deleted in new
chr7	85449859	85449989	ENSG00000225128.1|LINC00972|lncRNA|chr7:85449859:85449989:+	0	+
#Deleted in new
chr7	85488881	85489232	ENSG00000225128.1|LINC00972|lncRNA|chr7:85488881:85489232:+	0	+
#Deleted in new
chr7	85488881	85489293	ENSG00000225128.1|LINC00972|lncRNA|chr7:85488881:85489293:+	0	+
#Deleted in new
chr7	856357	856401	ENSG00000164828.17|SUN1|pc|chr7:856357:856401:+	0	+
#Partially deleted in new
chr7	868473	869516	ENSG00000164828.17|SUN1|pc|chr7:868473:869516:+	0	+
#Deleted in new
chr7	86920762	86920868	ENSG00000164659.14|KIAA1324L|pc|chr7:86920762:86920868:-	0	-
#Partially deleted in new
chr7	87109538	87111282	ENSG00000261462.1|AC004023.1|lncRNA|chr7:87109538:87111282:+	0	+
#Deleted in new
chr7	87151422	87151658	ENSG00000224046.1|AC005076.1|lncRNA|chr7:87151422:87151658:-	0	-
#Deleted in new
chr7	87151439	87151658	ENSG00000224046.1|AC005076.1|lncRNA|chr7:87151439:87151658:-	0	-
#Deleted in new
chr7	87151749	87152282	ENSG00000224046.1|AC005076.1|lncRNA|chr7:87151749:87152282:-	0	-
#Partially deleted in new
chr7	87155454	87155497	ENSG00000135164.18|DMTF1|pc|chr7:87155454:87155497:+	0	+
#Deleted in new
chr7	87325224	87325444	ENSG00000182165.17|TP53TG1|lncRNA|chr7:87325224:87325444:-	0	-
#Deleted in new
chr7	87325298	87325444	ENSG00000182165.17|TP53TG1|lncRNA|chr7:87325298:87325444:-	0	-
#Deleted in new
chr7	87325346	87325444	ENSG00000182165.17|TP53TG1|lncRNA|chr7:87325346:87325444:-	0	-
#Deleted in new
chr7	87325349	87325444	ENSG00000182165.17|TP53TG1|lncRNA|chr7:87325349:87325444:-	0	-
#Deleted in new
chr7	87357506	87357590	ENSG00000005469.11|CROT|pc|chr7:87357506:87357590:+	0	+
#Partially deleted in new
chr7	87479158	87480435	ENSG00000005471.15|ABCB4|pc|chr7:87479158:87480435:-	0	-
#Deleted in new
chr7	87518880	87518963	ENSG00000085563.14|ABCB1|pc|chr7:87518880:87518963:-	0	-
#Deleted in new
chr7	87693907	87693958	ENSG00000105784.15|RUNDC3B|pc|chr7:87693907:87693958:+	0	+
#Partially deleted in new
chr7	877904	878327	ENSG00000239857.6|GET4|pc|chr7:877904:878327:+	0	+
#Deleted in new
chr7	87860071	87860169	ENSG00000075303.12|SLC25A40|pc|chr7:87860071:87860169:-	0	-
#Deleted in new
chr7	87860571	87860598	ENSG00000075303.12|SLC25A40|pc|chr7:87860571:87860598:-	0	-
#Deleted in new
chr7	87860571	87860640	ENSG00000075303.12|SLC25A40|pc|chr7:87860571:87860640:-	0	-
#Partially deleted in new
chr7	879789	886547	ENSG00000273151.1|AC073957.3|lncRNA|chr7:879789:886547:-	0	-
#Partially deleted in new
chr7	88231299	88231774	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88231299:88231774:+	0	+
#Deleted in new
chr7	88231573	88232167	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88231573:88232167:+	0	+
#Deleted in new
chr7	88231672	88232167	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88231672:88232167:+	0	+
#Deleted in new
chr7	88232010	88232167	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88232010:88232167:+	0	+
#Deleted in new
chr7	88239417	88239500	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88239417:88239500:+	0	+
#Deleted in new
chr7	88241311	88241436	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88241311:88241436:+	0	+
#Deleted in new
chr7	88243772	88243877	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88243772:88243877:+	0	+
#Deleted in new
chr7	88243776	88243832	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88243776:88243832:+	0	+
#Deleted in new
chr7	88243784	88243877	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88243784:88243877:+	0	+
#Deleted in new
chr7	88253042	88253160	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88253042:88253160:+	0	+
#Deleted in new
chr7	88259708	88259826	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88259708:88259826:+	0	+
#Deleted in new
chr7	88271762	88271870	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88271762:88271870:+	0	+
#Deleted in new
chr7	88290291	88290423	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88290291:88290423:+	0	+
#Partially deleted in new
chr7	88304035	88304367	ENSG00000228113.7|AC003991.1|lncRNA|chr7:88304035:88304367:+	0	+
#Partially deleted in new
chr7	883542	886134	ENSG00000239857.6|GET4|pc|chr7:883542:886134:+	0	+
#Deleted in new
chr7	884023	884394	ENSG00000239857.6|GET4|pc|chr7:884023:884394:+	0	+
#Deleted in new
chr7	88732706	88733034	ENSG00000233420.1|AC002127.2|lncRNA|chr7:88732706:88733034:+	0	+
#Deleted in new
chr7	88733564	88733654	ENSG00000233420.1|AC002127.2|lncRNA|chr7:88733564:88733654:+	0	+
#Deleted in new
chr7	88747237	88747339	ENSG00000233420.1|AC002127.2|lncRNA|chr7:88747237:88747339:+	0	+
#Deleted in new
chr7	89443973	89444057	ENSG00000227863.2|AC002383.1|lncRNA|chr7:89443973:89444057:+	0	+
#Deleted in new
chr7	89490119	89490274	ENSG00000227863.2|AC002383.1|lncRNA|chr7:89490119:89490274:+	0	+
#Deleted in new
chr7	89491634	89491710	ENSG00000227863.2|AC002383.1|lncRNA|chr7:89491634:89491710:+	0	+
#Partially deleted in new
chr7	89882352	89882555	ENSG00000227646.7|STEAP2-AS1|lncRNA|chr7:89882352:89882555:-	0	-
#Partially deleted in new
chr7	900532	901399	ENSG00000105963.13|ADAP1|pc|chr7:900532:901399:-	0	-
#Deleted in new
chr7	900935	901031	ENSG00000105963.13|ADAP1|pc|chr7:900935:901031:-	0	-
#Deleted in new
chr7	90167589	90167913	ENSG00000157214.13|STEAP2|pc|chr7:90167589:90167913:+	0	+
#Deleted in new
chr7	90270089	90270216	ENSG00000234459.1|AC002064.2|lncRNA|chr7:90270089:90270216:-	0	-
#Deleted in new
chr7	90335222	90335571	ENSG00000105793.15|GTPBP10|pc|chr7:90335222:90335571:+	0	+
#Deleted in new
chr7	90336493	90336584	ENSG00000105793.15|GTPBP10|pc|chr7:90336493:90336584:+	0	+
#Deleted in new
chr7	90338165	90338307	ENSG00000105793.15|GTPBP10|pc|chr7:90338165:90338307:+	0	+
#Deleted in new
chr7	90340370	90340524	ENSG00000105793.15|GTPBP10|pc|chr7:90340370:90340524:+	0	+
#Deleted in new
chr7	90340375	90340524	ENSG00000105793.15|GTPBP10|pc|chr7:90340375:90340524:+	0	+
#Deleted in new
chr7	90342244	90342322	ENSG00000105793.15|GTPBP10|pc|chr7:90342244:90342322:+	0	+
#Deleted in new
chr7	90463239	90463371	ENSG00000157224.15|CLDN12|pc|chr7:90463239:90463371:+	0	+
#Deleted in new
chr7	90466409	90466513	ENSG00000157224.15|CLDN12|pc|chr7:90466409:90466513:+	0	+
#Deleted in new
chr7	90466423	90466513	ENSG00000058091.16|CDK14|pc|chr7:90466423:90466513:+	0	+
#Partially deleted in new
chr7	905059	905616	ENSG00000105963.13|ADAP1|pc|chr7:905059:905616:-	0	-
#Partially deleted in new
chr7	9082556	9084548	ENSG00000278254.4|AC004852.2|lncRNA|chr7:9082556:9084548:-	0	-
#Deleted in new
chr7	90979391	90979801	ENSG00000058091.16|CDK14|pc|chr7:90979391:90979801:+	0	+
#Deleted in new
chr7	91311367	91311386	ENSG00000243144.6|AC079760.2|lncRNA|chr7:91311367:91311386:+	0	+
#Deleted in new
chr7	91312439	91312562	ENSG00000243144.6|AC079760.2|lncRNA|chr7:91312439:91312562:+	0	+
#Deleted in new
chr7	91315972	91316030	ENSG00000243144.6|AC079760.2|lncRNA|chr7:91315972:91316030:+	0	+
#Deleted in new
chr7	91333853	91333961	ENSG00000243144.6|AC079760.2|lncRNA|chr7:91333853:91333961:+	0	+
#Deleted in new
chr7	9142615	9142923	ENSG00000278254.4|AC004852.2|lncRNA|chr7:9142615:9142923:-	0	-
#Deleted in new
chr7	91466844	91466878	ENSG00000243144.6|AC079760.2|lncRNA|chr7:91466844:91466878:+	0	+
#Deleted in new
chr7	91827414	91827480	ENSG00000127989.13|MTERF1|pc|chr7:91827414:91827480:-	0	-
#Deleted in new
chr7	9189559	9189765	ENSG00000278254.4|AC004852.2|lncRNA|chr7:9189559:9189765:-	0	-
#Deleted in new
chr7	9189559	9189785	ENSG00000278254.4|AC004852.2|lncRNA|chr7:9189559:9189785:-	0	-
#Deleted in new
chr7	9189559	9189857	ENSG00000278254.4|AC004852.2|lncRNA|chr7:9189559:9189857:-	0	-
#Deleted in new
chr7	9189576	9189785	ENSG00000278254.4|AC004852.2|lncRNA|chr7:9189576:9189785:-	0	-
#Deleted in new
chr7	91970472	91970508	ENSG00000127914.16|AKAP9|pc|chr7:91970472:91970508:+	0	+
#Deleted in new
chr7	920783	920889	ENSG00000105963.13|ADAP1|pc|chr7:920783:920889:-	0	-
#Deleted in new
chr7	92138766	92138951	ENSG00000188693.7|CYP51A1-AS1|lncRNA|chr7:92138766:92138951:+	0	+
#Deleted in new
chr7	92141642	92142829	ENSG00000240720.7|LRRD1|pc|chr7:92141642:92142829:-	0	-
#Deleted in new
chr7	92142401	92142734	ENSG00000188693.7|CYP51A1-AS1|lncRNA|chr7:92142401:92142734:+	0	+
#Deleted in new
chr7	92142462	92142952	ENSG00000001630.15|CYP51A1|pc|chr7:92142462:92142952:-	0	-
#Partially deleted in new
chr7	92178850	92180725	ENSG00000188693.7|CYP51A1-AS1|lncRNA|chr7:92178850:92180725:+	0	+
#Deleted in new
chr7	92178971	92179127	ENSG00000240720.7|LRRD1|pc|chr7:92178971:92179127:-	0	-
#Deleted in new
chr7	92179006	92179133	ENSG00000240720.7|LRRD1|pc|chr7:92179006:92179133:-	0	-
#Deleted in new
chr7	92179006	92179511	ENSG00000240720.7|LRRD1|pc|chr7:92179006:92179511:-	0	-
#Deleted in new
chr7	92179006	92179531	ENSG00000240720.7|LRRD1|pc|chr7:92179006:92179531:-	0	-
#Partially deleted in new
chr7	92205697	92206857	ENSG00000243107.1|AC000120.1|lncRNA|chr7:92205697:92206857:-	0	-
#Partially deleted in new
chr7	92294461	92294516	ENSG00000001629.9|ANKIB1|pc|chr7:92294461:92294516:+	0	+
#Deleted in new
chr7	922976	923338	ENSG00000105963.13|ADAP1|pc|chr7:922976:923338:-	0	-
#Partially deleted in new
chr7	92319619	92319966	ENSG00000001629.9|ANKIB1|pc|chr7:92319619:92319966:+	0	+
#Deleted in new
chr7	92347946	92348016	ENSG00000001629.9|ANKIB1|pc|chr7:92347946:92348016:+	0	+
#Partially deleted in new
chr7	92456371	92458836	ENSG00000157259.6|GATAD1|pc|chr7:92456371:92458836:+	0	+
#Deleted in new
chr7	92461318	92461410	ENSG00000244055.1|AC007566.1|lncRNA|chr7:92461318:92461410:+	0	+
#Deleted in new
chr7	92462957	92463026	ENSG00000244055.1|AC007566.1|lncRNA|chr7:92462957:92463026:+	0	+
#Deleted in new
chr7	92465101	92465189	ENSG00000244055.1|AC007566.1|lncRNA|chr7:92465101:92465189:+	0	+
#Deleted in new
chr7	92468379	92468945	ENSG00000242950.6|ERVW-1|pc|chr7:92468379:92468945:-	0	-
#Deleted in new
chr7	92468379	92470608	ENSG00000242950.6|ERVW-1|pc|chr7:92468379:92470608:-	0	-
#Deleted in new
chr7	92468380	92471305	ENSG00000242950.6|ERVW-1|pc|chr7:92468380:92471305:-	0	-
#Deleted in new
chr7	92470403	92473189	ENSG00000242950.6|ERVW-1|pc|chr7:92470403:92473189:-	0	-
#Deleted in new
chr7	92474591	92475306	ENSG00000242950.6|ERVW-1|pc|chr7:92474591:92475306:-	0	-
#Deleted in new
chr7	92477381	92477915	ENSG00000242950.6|ERVW-1|pc|chr7:92477381:92477915:-	0	-
#Deleted in new
chr7	92477381	92477946	ENSG00000242950.6|ERVW-1|pc|chr7:92477381:92477946:-	0	-
#Deleted in new
chr7	92477381	92477986	ENSG00000242950.6|ERVW-1|pc|chr7:92477381:92477986:-	0	-
#Partially deleted in new
chr7	92585297	92585396	ENSG00000234545.7|FAM133B|pc|chr7:92585297:92585396:-	0	-
#Deleted in new
chr7	92589859	92590070	ENSG00000234545.7|FAM133B|pc|chr7:92589859:92590070:-	0	-
#Deleted in new
chr7	92589875	92590030	ENSG00000234545.7|FAM133B|pc|chr7:92589875:92590030:-	0	-
#Deleted in new
chr7	927055	927216	ENSG00000105963.13|ADAP1|pc|chr7:927055:927216:-	0	-
#Deleted in new
chr7	927473	927514	ENSG00000105963.13|ADAP1|pc|chr7:927473:927514:-	0	-
#Deleted in new
chr7	92854908	92854953	ENSG00000237819.5|AC002454.1|lncRNA|chr7:92854908:92854953:+	0	+
#Deleted in new
chr7	93114794	93114895	ENSG00000205413.7|SAMD9|pc|chr7:93114794:93114895:-	0	-
#Deleted in new
chr7	93117862	93117962	ENSG00000205413.7|SAMD9|pc|chr7:93117862:93117962:-	0	-
#Deleted in new
chr7	93117862	93118023	ENSG00000205413.7|SAMD9|pc|chr7:93117862:93118023:-	0	-
#Deleted in new
chr7	93145384	93145532	ENSG00000177409.11|SAMD9L|pc|chr7:93145384:93145532:-	0	-
#Deleted in new
chr7	93145384	93146040	ENSG00000177409.11|SAMD9L|pc|chr7:93145384:93146040:-	0	-
#Deleted in new
chr7	93145605	93146040	ENSG00000177409.11|SAMD9L|pc|chr7:93145605:93146040:-	0	-
#Deleted in new
chr7	93145908	93146040	ENSG00000177409.11|SAMD9L|pc|chr7:93145908:93146040:-	0	-
#Deleted in new
chr7	93146882	93147146	ENSG00000177409.11|SAMD9L|pc|chr7:93146882:93147146:-	0	-
#Deleted in new
chr7	93147087	93147146	ENSG00000177409.11|SAMD9L|pc|chr7:93147087:93147146:-	0	-
#Deleted in new
chr7	93320375	93321058	ENSG00000004766.15|VPS50|pc|chr7:93320375:93321058:+	0	+
#Deleted in new
chr7	93320852	93321170	ENSG00000004766.15|VPS50|pc|chr7:93320852:93321170:+	0	+
#Deleted in new
chr7	93441499	93441549	ENSG00000004948.13|CALCR|pc|chr7:93441499:93441549:-	0	-
#Deleted in new
chr7	93462062	93462110	ENSG00000004948.13|CALCR|pc|chr7:93462062:93462110:-	0	-
#Deleted in new
chr7	93495903	93495974	ENSG00000004948.13|CALCR|pc|chr7:93495903:93495974:-	0	-
#Deleted in new
chr7	935146	935180	ENSG00000105963.13|ADAP1|pc|chr7:935146:935180:-	0	-
#Deleted in new
chr7	93591572	93591771	ENSG00000127928.12|GNGT1|pc|chr7:93591572:93591771:+	0	+
#Partially deleted in new
chr7	93893241	93893601	ENSG00000234695.1|AC002076.1|lncRNA|chr7:93893241:93893601:+	0	+
#Deleted in new
chr7	93909482	93909859	ENSG00000127928.12|GNGT1|pc|chr7:93909482:93909859:+	0	+
#Partially deleted in new
chr7	93909482	93910055	ENSG00000127928.12|GNGT1|pc|chr7:93909482:93910055:+	0	+
#Partially deleted in new
chr7	93962761	93965687	ENSG00000105829.11|BET1|pc|chr7:93962761:93965687:-	0	-
#Deleted in new
chr7	93992036	93992166	ENSG00000236861.6|AC006378.1|lncRNA|chr7:93992036:93992166:+	0	+
#Deleted in new
chr7	94000296	94000372	ENSG00000236861.6|AC006378.1|lncRNA|chr7:94000296:94000372:+	0	+
#Deleted in new
chr7	94022832	94022907	ENSG00000236453.5|AC003092.1|lncRNA|chr7:94022832:94022907:+	0	+
#Deleted in new
chr7	94061140	94061270	ENSG00000236453.5|AC003092.1|lncRNA|chr7:94061140:94061270:+	0	+
#Deleted in new
chr7	94061455	94061625	ENSG00000236453.5|AC003092.1|lncRNA|chr7:94061455:94061625:+	0	+
#Deleted in new
chr7	94061768	94061864	ENSG00000236453.5|AC003092.1|lncRNA|chr7:94061768:94061864:+	0	+
#Partially deleted in new
chr7	94076994	94077157	ENSG00000236938.1|AC003092.2|lncRNA|chr7:94076994:94077157:-	0	-
#Partially deleted in new
chr7	95035730	95037111	ENSG00000236197.3|AC002429.2|pc|chr7:95035730:95037111:-	0	-
#Deleted in new
chr7	95036535	95036781	ENSG00000236197.3|AC002429.2|pc|chr7:95036535:95036781:-	0	-
#Deleted in new
chr7	95154712	95156951	ENSG00000236197.3|AC002429.2|pc|chr7:95154712:95156951:-	0	-
#Deleted in new
chr7	95174946	95175089	ENSG00000236197.3|AC002429.2|pc|chr7:95174946:95175089:-	0	-
#Deleted in new
chr7	95176492	95176531	ENSG00000236197.3|AC002429.2|pc|chr7:95176492:95176531:-	0	-
#Deleted in new
chr7	95214184	95214332	ENSG00000236197.3|AC002429.2|pc|chr7:95214184:95214332:-	0	-
#Deleted in new
chr7	95377532	95377676	ENSG00000105852.10|PON3|pc|chr7:95377532:95377676:-	0	-
#Partially deleted in new
chr7	95424163	95424585	ENSG00000105854.12|PON2|pc|chr7:95424163:95424585:-	0	-
#Deleted in new
chr7	955276	955350	ENSG00000105963.13|ADAP1|pc|chr7:955276:955350:-	0	-
#Deleted in new
chr7	955292	955406	ENSG00000105963.13|ADAP1|pc|chr7:955292:955406:-	0	-
#Deleted in new
chr7	955292	955407	ENSG00000105963.13|ADAP1|pc|chr7:955292:955407:-	0	-
#Deleted in new
chr7	95563	95683	ENSG00000232325.4|AC093627.1|lncRNA|chr7:95563:95683:-	0	-
#Partially deleted in new
chr7	95606939	95607144	ENSG00000231170.5|AC002451.1|lncRNA|chr7:95606939:95607144:+	0	+
#Deleted in new
chr7	95613050	95613541	ENSG00000231170.5|AC002451.1|lncRNA|chr7:95613050:95613541:+	0	+
#Deleted in new
chr7	95613050	95613719	ENSG00000231170.5|AC002451.1|lncRNA|chr7:95613050:95613719:+	0	+
#Deleted in new
chr7	95837617	95837649	ENSG00000158560.14|DYNC1I1|pc|chr7:95837617:95837649:+	0	+
#Deleted in new
chr7	96109978	96110071	ENSG00000158560.14|DYNC1I1|pc|chr7:96109978:96110071:+	0	+
#Deleted in new
chr7	96109978	96110322	ENSG00000158560.14|DYNC1I1|pc|chr7:96109978:96110322:+	0	+
#Deleted in new
chr7	96483712	96483988	ENSG00000127922.9|SEM1|pc|chr7:96483712:96483988:-	0	-
#Deleted in new
chr7	96484824	96484854	ENSG00000127922.9|SEM1|pc|chr7:96484824:96484854:-	0	-
#Deleted in new
chr7	96506622	96506698	ENSG00000127922.9|SEM1|pc|chr7:96506622:96506698:-	0	-
#Partially deleted in new
chr7	96558116	96558256	ENSG00000127922.9|SEM1|pc|chr7:96558116:96558256:-	0	-
#Partially deleted in new
chr7	966074	969456	ENSG00000240230.5|COX19|pc|chr7:966074:969456:-	0	-
#Deleted in new
chr7	96645389	96645932	ENSG00000127922.9|SEM1|pc|chr7:96645389:96645932:-	0	-
#Deleted in new
chr7	96645390	96645932	ENSG00000127922.9|SEM1|pc|chr7:96645390:96645932:-	0	-
#Deleted in new
chr7	96645587	96645936	ENSG00000127922.9|SEM1|pc|chr7:96645587:96645936:-	0	-
#Deleted in new
chr7	96645723	96645932	ENSG00000127922.9|SEM1|pc|chr7:96645723:96645932:-	0	-
#Deleted in new
chr7	96645723	96645936	ENSG00000127922.9|SEM1|pc|chr7:96645723:96645936:-	0	-
#Deleted in new
chr7	96645822	96645936	ENSG00000127922.9|SEM1|pc|chr7:96645822:96645936:-	0	-
#Deleted in new
chr7	96645837	96645932	ENSG00000127922.9|SEM1|pc|chr7:96645837:96645932:-	0	-
#Deleted in new
chr7	96664166	96664245	ENSG00000127922.9|SEM1|pc|chr7:96664166:96664245:-	0	-
#Deleted in new
chr7	96664202	96664285	ENSG00000127922.9|SEM1|pc|chr7:96664202:96664285:-	0	-
#Deleted in new
chr7	96664202	96664338	ENSG00000127922.9|SEM1|pc|chr7:96664202:96664338:-	0	-
#Partially deleted in new
chr7	96706221	96706395	ENSG00000127922.9|SEM1|pc|chr7:96706221:96706395:-	0	-
#Partially deleted in new
chr7	96979083	96979591	ENSG00000231764.8|DLX6-AS1|lncRNA|chr7:96979083:96979591:-	0	-
#Partially deleted in new
chr7	97142672	97142835	ENSG00000196636.7|SDHAF3|pc|chr7:97142672:97142835:+	0	+
#Partially deleted in new
chr7	97142680	97142818	ENSG00000196636.7|SDHAF3|pc|chr7:97142680:97142818:+	0	+
#Partially deleted in new
chr7	972700	973292	ENSG00000240230.5|COX19|pc|chr7:972700:973292:-	0	-
#Deleted in new
chr7	9737321	9737483	ENSG00000234710.1|AC060834.2|lncRNA|chr7:9737321:9737483:+	0	+
#Deleted in new
chr7	974906	975116	ENSG00000240230.5|COX19|pc|chr7:974906:975116:-	0	-
#Deleted in new
chr7	9760555	9760609	ENSG00000234710.1|AC060834.2|lncRNA|chr7:9760555:9760609:+	0	+
#Deleted in new
chr7	9769232	9769513	ENSG00000234710.1|AC060834.2|lncRNA|chr7:9769232:9769513:+	0	+
#Partially deleted in new
chr7	97863095	97864496	ENSG00000070669.16|ASNS|pc|chr7:97863095:97864496:-	0	-
#Deleted in new
chr7	97908794	97909011	ENSG00000284707.1|AC079781.5|lncRNA|chr7:97908794:97909011:-	0	-
#Deleted in new
chr7	97913012	97913104	ENSG00000284707.1|AC079781.5|lncRNA|chr7:97913012:97913104:-	0	-
#Deleted in new
chr7	97936946	97937160	ENSG00000284707.1|AC079781.5|lncRNA|chr7:97936946:97937160:-	0	-
#Deleted in new
chr7	97937079	97937160	ENSG00000284707.1|AC079781.5|lncRNA|chr7:97937079:97937160:-	0	-
#Deleted in new
chr7	97945507	97945615	ENSG00000284707.1|AC079781.5|lncRNA|chr7:97945507:97945615:-	0	-
#Deleted in new
chr7	98226591	98226769	ENSG00000205356.9|TECPR1|pc|chr7:98226591:98226769:-	0	-
#Partially deleted in new
chr7	98252378	98252528	ENSG00000164713.9|BRI3|pc|chr7:98252378:98252528:+	0	+
#Partially deleted in new
chr7	98307136	98307449	ENSG00000164713.9|BRI3|pc|chr7:98307136:98307449:+	0	+
#Partially deleted in new
chr7	988634	989640	ENSG00000073067.13|CYP2W1|pc|chr7:988634:989640:+	0	+
#Partially deleted in new
chr7	98865797	98866946	ENSG00000166448.14|TMEM130|pc|chr7:98865797:98866946:-	0	-
#Deleted in new
chr7	98870398	98870771	ENSG00000166448.14|TMEM130|pc|chr7:98870398:98870771:-	0	-
#Partially deleted in new
chr7	98878082	98878292	ENSG00000196367.12|TRRAP|pc|chr7:98878082:98878292:+	0	+
#Deleted in new
chr7	99030884	99031000	ENSG00000242687.2|AC004893.2|lncRNA|chr7:99030884:99031000:+	0	+
#Split in new
chr7	99032926	99033039	ENSG00000242687.2|AC004893.2|lncRNA|chr7:99032926:99033039:+	0	+
#Deleted in new
chr7	99081074	99081427	ENSG00000198742.9|SMURF1|pc|chr7:99081074:99081427:-	0	-
#Deleted in new
chr7	99121145	99121203	ENSG00000198742.9|SMURF1|pc|chr7:99121145:99121203:-	0	-
#Partially deleted in new
chr7	99173573	99173794	ENSG00000185467.7|KPNA7|pc|chr7:99173573:99173794:-	0	-
#Split in new
chr7	99252451	99254245	ENSG00000284523.1|AC004834.1|lncRNA|chr7:99252451:99254245:-	0	-
#Partially deleted in new
chr7	99260569	99261925	ENSG00000284523.1|AC004834.1|lncRNA|chr7:99260569:99261925:-	0	-
#Deleted in new
chr7	99290876	99290976	ENSG00000284523.1|AC004834.1|lncRNA|chr7:99290876:99290976:-	0	-
#Deleted in new
chr7	99305588	99305769	ENSG00000284523.1|AC004834.1|lncRNA|chr7:99305588:99305769:-	0	-
#Deleted in new
chr7	99319236	99319444	ENSG00000284523.1|AC004834.1|lncRNA|chr7:99319236:99319444:-	0	-
#Deleted in new
chr7	99335452	99335484	ENSG00000284292.1|AC004922.1|pc|chr7:99335452:99335484:+	0	+
#Deleted in new
chr7	99339857	99340009	ENSG00000284292.1|AC004922.1|pc|chr7:99339857:99340009:+	0	+
#Deleted in new
chr7	99358665	99358775	ENSG00000241685.9|ARPC1A|pc|chr7:99358665:99358775:+	0	+
#Deleted in new
chr7	99359958	99360242	ENSG00000241685.9|ARPC1A|pc|chr7:99359958:99360242:+	0	+
#Partially deleted in new
chr7	99374248	99374578	ENSG00000130429.12|ARPC1B|pc|chr7:99374248:99374578:+	0	+
#Partially deleted in new
chr7	99374258	99374511	ENSG00000130429.12|ARPC1B|pc|chr7:99374258:99374511:+	0	+
#Deleted in new
chr7	99376432	99376574	ENSG00000130429.12|ARPC1B|pc|chr7:99376432:99376574:+	0	+
#Deleted in new
chr7	99376443	99376574	ENSG00000130429.12|ARPC1B|pc|chr7:99376443:99376574:+	0	+
#Deleted in new
chr7	99377333	99377439	ENSG00000130429.12|ARPC1B|pc|chr7:99377333:99377439:+	0	+
#Deleted in new
chr7	99377337	99377439	ENSG00000130429.12|ARPC1B|pc|chr7:99377337:99377439:+	0	+
#Deleted in new
chr7	99377337	99377455	ENSG00000130429.12|ARPC1B|pc|chr7:99377337:99377455:+	0	+
#Deleted in new
chr7	99377357	99377439	ENSG00000130429.12|ARPC1B|pc|chr7:99377357:99377439:+	0	+
#Deleted in new
chr7	99377357	99377455	ENSG00000130429.12|ARPC1B|pc|chr7:99377357:99377455:+	0	+
#Deleted in new
chr7	99384050	99384171	ENSG00000130429.12|ARPC1B|pc|chr7:99384050:99384171:+	0	+
#Deleted in new
chr7	99388654	99388843	ENSG00000130429.12|ARPC1B|pc|chr7:99388654:99388843:+	0	+
#Deleted in new
chr7	99388654	99388956	ENSG00000130429.12|ARPC1B|pc|chr7:99388654:99388956:+	0	+
#Partially deleted in new
chr7	99389093	99389983	ENSG00000130429.12|ARPC1B|pc|chr7:99389093:99389983:+	0	+
#Deleted in new
chr7	99392047	99392150	ENSG00000106244.12|PDAP1|pc|chr7:99392047:99392150:-	0	-
#Deleted in new
chr7	99411749	99411983	ENSG00000106245.10|BUD31|pc|chr7:99411749:99411983:+	0	+
#Deleted in new
chr7	99415135	99415266	ENSG00000106245.10|BUD31|pc|chr7:99415135:99415266:+	0	+
#Deleted in new
chr7	99432923	99432947	ENSG00000106246.17|PTCD1|pc|chr7:99432923:99432947:-	0	-
#Deleted in new
chr7	99441389	99441487	ENSG00000248919.7|ATP5J2-PTCD1|pc|chr7:99441389:99441487:-	0	-
#Deleted in new
chr7	99472840	99473056	ENSG00000198556.13|ZNF789|pc|chr7:99472840:99473056:+	0	+
#Deleted in new
chr7	99472889	99473056	ENSG00000198556.13|ZNF789|pc|chr7:99472889:99473056:+	0	+
#Deleted in new
chr7	99472891	99473056	ENSG00000198556.13|ZNF789|pc|chr7:99472891:99473056:+	0	+
#Deleted in new
chr7	99472892	99473056	ENSG00000198556.13|ZNF789|pc|chr7:99472892:99473056:+	0	+
#Deleted in new
chr7	99472910	99473056	ENSG00000198556.13|ZNF789|pc|chr7:99472910:99473056:+	0	+
#Deleted in new
chr7	99472911	99473056	ENSG00000198556.13|ZNF789|pc|chr7:99472911:99473056:+	0	+
#Deleted in new
chr7	99472934	99473056	ENSG00000198556.13|ZNF789|pc|chr7:99472934:99473056:+	0	+
#Deleted in new
chr7	99478273	99478356	ENSG00000198556.13|ZNF789|pc|chr7:99478273:99478356:+	0	+
#Partially deleted in new
chr7	99478273	99482326	ENSG00000198556.13|ZNF789|pc|chr7:99478273:99482326:+	0	+
#Partially deleted in new
chr7	99479660	99481301	ENSG00000198556.13|ZNF789|pc|chr7:99479660:99481301:+	0	+
#Partially deleted in new
chr7	99479660	99482326	ENSG00000198556.13|ZNF789|pc|chr7:99479660:99482326:+	0	+
#Deleted in new
chr7	99482162	99482322	ENSG00000198556.13|ZNF789|pc|chr7:99482162:99482322:+	0	+
#Partially deleted in new
chr7	99483654	99484143	ENSG00000198556.13|ZNF789|pc|chr7:99483654:99484143:+	0	+
#Deleted in new
chr7	99483738	99483853	ENSG00000198556.13|ZNF789|pc|chr7:99483738:99483853:+	0	+
#Deleted in new
chr7	99485207	99485368	ENSG00000198556.13|ZNF789|pc|chr7:99485207:99485368:+	0	+
#Deleted in new
chr7	99500722	99501019	ENSG00000198556.13|ZNF789|pc|chr7:99500722:99501019:+	0	+
#Deleted in new
chr7	99503546	99503650	ENSG00000198556.13|ZNF789|pc|chr7:99503546:99503650:+	0	+
#Partially deleted in new
chr7	99504674	99504733	ENSG00000196652.11|ZKSCAN5|pc|chr7:99504674:99504733:+	0	+
#Partially deleted in new
chr7	99546307	99548506	ENSG00000221909.2|FAM200A|pc|chr7:99546307:99548506:-	0	-
#Partially deleted in new
chr7	99546800	99548506	ENSG00000221909.2|FAM200A|pc|chr7:99546800:99548506:-	0	-
#Partially deleted in new
chr7	99551853	99552134	ENSG00000221909.2|FAM200A|pc|chr7:99551853:99552134:-	0	-
#Deleted in new
chr7	99598065	99598381	ENSG00000244219.6|TMEM225B|pc|chr7:99598065:99598381:+	0	+
#Deleted in new
chr7	99598278	99598372	ENSG00000244219.6|TMEM225B|pc|chr7:99598278:99598372:+	0	+
#Deleted in new
chr7	99598284	99598381	ENSG00000244219.6|TMEM225B|pc|chr7:99598284:99598381:+	0	+
#Deleted in new
chr7	99600204	99600285	ENSG00000244219.6|TMEM225B|pc|chr7:99600204:99600285:+	0	+
#Deleted in new
chr7	99600207	99600285	ENSG00000244219.6|TMEM225B|pc|chr7:99600207:99600285:+	0	+
#Deleted in new
chr7	99600207	99600285	ENSG00000272647.3|AC005020.2|pc|chr7:99600207:99600285:+	0	+
#Deleted in new
chr7	99605463	99605559	ENSG00000244219.6|TMEM225B|pc|chr7:99605463:99605559:+	0	+
#Deleted in new
chr7	99606747	99606894	ENSG00000244219.6|TMEM225B|pc|chr7:99606747:99606894:+	0	+
#Deleted in new
chr7	99606747	99606894	ENSG00000272647.3|AC005020.2|pc|chr7:99606747:99606894:+	0	+
#Deleted in new
chr7	99607672	99607810	ENSG00000244219.6|TMEM225B|pc|chr7:99607672:99607810:+	0	+
#Deleted in new
chr7	99607672	99607810	ENSG00000272647.3|AC005020.2|pc|chr7:99607672:99607810:+	0	+
#Deleted in new
chr7	99610392	99610762	ENSG00000244219.6|TMEM225B|pc|chr7:99610392:99610762:+	0	+
#Deleted in new
chr7	99610392	99610813	ENSG00000244219.6|TMEM225B|pc|chr7:99610392:99610813:+	0	+
#Deleted in new
chr7	9961284	9961423	ENSG00000235431.1|AC004936.1|lncRNA|chr7:9961284:9961423:+	0	+
#Deleted in new
chr7	99618134	99618209	ENSG00000197037.10|ZSCAN25|pc|chr7:99618134:99618209:+	0	+
#Deleted in new
chr7	99618524	99618651	ENSG00000197037.10|ZSCAN25|pc|chr7:99618524:99618651:+	0	+
#Deleted in new
chr7	99619047	99619132	ENSG00000197037.10|ZSCAN25|pc|chr7:99619047:99619132:+	0	+
#Split in new
chr7	99658832	99660659	ENSG00000106258.13|CYP3A5|pc|chr7:99658832:99660659:-	0	-
#Deleted in new
chr7	99670909	99671878	ENSG00000106258.13|CYP3A5|pc|chr7:99670909:99671878:-	0	-
#Deleted in new
chr7	99671221	99671878	ENSG00000106258.13|CYP3A5|pc|chr7:99671221:99671878:-	0	-
#Deleted in new
chr7	99671770	99671878	ENSG00000106258.13|CYP3A5|pc|chr7:99671770:99671878:-	0	-
#Partially deleted in new
chr7	99674225	99674585	ENSG00000106258.13|CYP3A5|pc|chr7:99674225:99674585:-	0	-
#Duplicated in new
chr7	99730572	99731152	ENSG00000160870.12|CYP3A7|pc|chr7:99730572:99731152:-	0	-
#Deleted in new
chr7	99839413	99839420	ENSG00000021461.16|CYP3A43|pc|chr7:99839413:99839420:+	0	+
#Deleted in new
chr7	99849978	99850099	ENSG00000021461.16|CYP3A43|pc|chr7:99849978:99850099:+	0	+
#Partially deleted in new
chr7	99890412	99892746	ENSG00000146833.15|TRIM4|pc|chr7:99890412:99892746:-	0	-
#Deleted in new
chr7	99901165	99902174	ENSG00000146833.15|TRIM4|pc|chr7:99901165:99902174:-	0	-
#Deleted in new
chr7	99903217	99903315	ENSG00000146833.15|TRIM4|pc|chr7:99903217:99903315:-	0	-
#Deleted in new
chr7	99903575	99903598	ENSG00000146833.15|TRIM4|pc|chr7:99903575:99903598:-	0	-
#Deleted in new
chr7	99908245	99908812	ENSG00000146833.15|TRIM4|pc|chr7:99908245:99908812:-	0	-
#Deleted in new
chr7	99908581	99908812	ENSG00000146833.15|TRIM4|pc|chr7:99908581:99908812:-	0	-
#Deleted in new
chr7	99909564	99909598	ENSG00000146833.15|TRIM4|pc|chr7:99909564:99909598:-	0	-
#Deleted in new
chr7	99909564	99909660	ENSG00000146833.15|TRIM4|pc|chr7:99909564:99909660:-	0	-
#Deleted in new
chr7	99916701	99916779	ENSG00000146833.15|TRIM4|pc|chr7:99916701:99916779:-	0	-
#Deleted in new
chr7	99923268	99923603	ENSG00000176402.5|GJC3|pc|chr7:99923268:99923603:-	0	-
#Deleted in new
chr7	99948481	99948620	ENSG00000237640.1|AC004522.2|lncRNA|chr7:99948481:99948620:+	0	+
#Deleted in new
chr7	99967481	99967593	ENSG00000160862.12|AZGP1|pc|chr7:99967481:99967593:-	0	-
#Deleted in new
chr8	100002934	100003046	ENSG00000132554.19|RGS22|pc|chr8:100002934:100003046:-	0	-
#Deleted in new
chr8	100003137	100003139	ENSG00000132554.19|RGS22|pc|chr8:100003137:100003139:-	0	-
#Deleted in new
chr8	100042710	100042768	ENSG00000132554.19|RGS22|pc|chr8:100042710:100042768:-	0	-
#Deleted in new
chr8	100046232	100046478	ENSG00000132554.19|RGS22|pc|chr8:100046232:100046478:-	0	-
#Deleted in new
chr8	100054333	100054423	ENSG00000132554.19|RGS22|pc|chr8:100054333:100054423:-	0	-
#Deleted in new
chr8	100106262	100106317	ENSG00000132554.19|RGS22|pc|chr8:100106262:100106317:-	0	-
#Deleted in new
chr8	100131131	100131268	ENSG00000132554.19|RGS22|pc|chr8:100131131:100131268:-	0	-
#Partially deleted in new
chr8	100153293	100153646	ENSG00000147669.10|POLR2K|pc|chr8:100153293:100153646:+	0	+
#Deleted in new
chr8	100157905	100158118	ENSG00000104450.12|SPAG1|pc|chr8:100157905:100158118:+	0	+
#Deleted in new
chr8	100158034	100158118	ENSG00000104450.12|SPAG1|pc|chr8:100158034:100158118:+	0	+
#Deleted in new
chr8	100300527	100300651	ENSG00000034677.12|RNF19A|pc|chr8:100300527:100300651:-	0	-
#Deleted in new
chr8	100300542	100300651	ENSG00000034677.12|RNF19A|pc|chr8:100300542:100300651:-	0	-
#Deleted in new
chr8	100300577	100300651	ENSG00000034677.12|RNF19A|pc|chr8:100300577:100300651:-	0	-
#Deleted in new
chr8	100312343	100312410	ENSG00000034677.12|RNF19A|pc|chr8:100312343:100312410:-	0	-
#Deleted in new
chr8	100350282	100350707	ENSG00000253217.1|AP001574.1|lncRNA|chr8:100350282:100350707:+	0	+
#Deleted in new
chr8	100381259	100381771	ENSG00000253824.1|AP003472.1|lncRNA|chr8:100381259:100381771:-	0	-
#Deleted in new
chr8	100381473	100381771	ENSG00000253824.1|AP003472.1|lncRNA|chr8:100381473:100381771:-	0	-
#Deleted in new
chr8	100414364	100414459	ENSG00000253824.1|AP003472.1|lncRNA|chr8:100414364:100414459:-	0	-
#Deleted in new
chr8	100475674	100475836	ENSG00000253666.1|AP000424.1|lncRNA|chr8:100475674:100475836:+	0	+
#Deleted in new
chr8	100475689	100475836	ENSG00000253666.1|AP000424.1|lncRNA|chr8:100475689:100475836:+	0	+
#Deleted in new
chr8	100482757	100483153	ENSG00000253666.1|AP000424.1|lncRNA|chr8:100482757:100483153:+	0	+
#Partially deleted in new
chr8	100493628	100493713	ENSG00000254364.1|AP000424.2|lncRNA|chr8:100493628:100493713:+	0	+
#Deleted in new
chr8	100500964	100501148	ENSG00000253666.1|AP000424.1|lncRNA|chr8:100500964:100501148:+	0	+
#Partially deleted in new
chr8	10050484	10054254	ENSG00000260093.1|AC034111.1|lncRNA|chr8:10050484:10054254:-	0	-
#Deleted in new
chr8	100532355	100532460	ENSG00000186106.11|ANKRD46|pc|chr8:100532355:100532460:-	0	-
#Deleted in new
chr8	100554578	100554717	ENSG00000186106.11|ANKRD46|pc|chr8:100554578:100554717:-	0	-
#Deleted in new
chr8	100556569	100556854	ENSG00000186106.11|ANKRD46|pc|chr8:100556569:100556854:-	0	-
#Deleted in new
chr8	100618330	100618393	ENSG00000174226.8|SNX31|pc|chr8:100618330:100618393:-	0	-
#Deleted in new
chr8	100619074	100619158	ENSG00000253740.5|AP001205.1|lncRNA|chr8:100619074:100619158:+	0	+
#Deleted in new
chr8	100619812	100619980	ENSG00000253740.5|AP001205.1|lncRNA|chr8:100619812:100619980:+	0	+
#Deleted in new
chr8	100619812	100619993	ENSG00000253740.5|AP001205.1|lncRNA|chr8:100619812:100619993:+	0	+
#Deleted in new
chr8	100657723	100657867	ENSG00000174226.8|SNX31|pc|chr8:100657723:100657867:-	0	-
#Deleted in new
chr8	100663141	100663219	ENSG00000174226.8|SNX31|pc|chr8:100663141:100663219:-	0	-
#Deleted in new
chr8	100913246	100914388	ENSG00000260368.1|AC027373.1|lncRNA|chr8:100913246:100914388:-	0	-
#Deleted in new
chr8	100932028	100932093	ENSG00000164924.17|YWHAZ|pc|chr8:100932028:100932093:-	0	-
#Deleted in new
chr8	100934856	100935055	ENSG00000164924.17|YWHAZ|pc|chr8:100934856:100935055:-	0	-
#Partially deleted in new
chr8	100951185	100951276	ENSG00000164924.17|YWHAZ|pc|chr8:100951185:100951276:-	0	-
#Partially deleted in new
chr8	100951234	100951449	ENSG00000164924.17|YWHAZ|pc|chr8:100951234:100951449:-	0	-
#Deleted in new
chr8	101133031	101133128	ENSG00000253355.1|AP003469.1|lncRNA|chr8:101133031:101133128:+	0	+
#Deleted in new
chr8	101133031	101133245	ENSG00000253355.1|AP003469.1|lncRNA|chr8:101133031:101133245:+	0	+
#Deleted in new
chr8	101133382	101133486	ENSG00000253355.1|AP003469.1|lncRNA|chr8:101133382:101133486:+	0	+
#Deleted in new
chr8	101139864	101139980	ENSG00000253737.1|AP003469.3|lncRNA|chr8:101139864:101139980:+	0	+
#Deleted in new
chr8	101140659	101140929	ENSG00000253737.1|AP003469.3|lncRNA|chr8:101140659:101140929:+	0	+
#Partially deleted in new
chr8	101205210	101205329	ENSG00000120963.11|ZNF706|pc|chr8:101205210:101205329:-	0	-
#Partially deleted in new
chr8	101261540	101262382	ENSG00000253679.1|AP001330.2|lncRNA|chr8:101261540:101262382:-	0	-
#Deleted in new
chr8	101262766	101262903	ENSG00000253679.1|AP001330.2|lncRNA|chr8:101262766:101262903:-	0	-
#Deleted in new
chr8	101293244	101293783	ENSG00000253282.1|AP001330.1|lncRNA|chr8:101293244:101293783:+	0	+
#Deleted in new
chr8	101387298	101387549	ENSG00000253644.1|AP001208.1|lncRNA|chr8:101387298:101387549:-	0	-
#Partially deleted in new
chr8	101461176	101461617	ENSG00000254024.1|AP001207.3|lncRNA|chr8:101461176:101461617:-	0	-
#Partially deleted in new
chr8	101692790	101694389	ENSG00000104490.17|NCALD|pc|chr8:101692790:101694389:-	0	-
#Partially deleted in new
chr8	101721212	101721351	ENSG00000104490.17|NCALD|pc|chr8:101721212:101721351:-	0	-
#Deleted in new
chr8	101750006	101750162	ENSG00000104490.17|NCALD|pc|chr8:101750006:101750162:-	0	-
#Deleted in new
chr8	101750042	101750162	ENSG00000104490.17|NCALD|pc|chr8:101750042:101750162:-	0	-
#Deleted in new
chr8	101750597	101750687	ENSG00000104490.17|NCALD|pc|chr8:101750597:101750687:-	0	-
#Deleted in new
chr8	101779921	101779979	ENSG00000104490.17|NCALD|pc|chr8:101779921:101779979:-	0	-
#Deleted in new
chr8	101779923	101779979	ENSG00000104490.17|NCALD|pc|chr8:101779923:101779979:-	0	-
#Deleted in new
chr8	1018756	1019704	ENSG00000282692.1|AC129915.3|lncRNA|chr8:1018756:1019704:+	0	+
#Deleted in new
chr8	102020236	102020289	ENSG00000104490.17|NCALD|pc|chr8:102020236:102020289:-	0	-
#Deleted in new
chr8	102020236	102020406	ENSG00000104490.17|NCALD|pc|chr8:102020236:102020406:-	0	-
#Partially deleted in new
chr8	102069988	102070106	ENSG00000104490.17|NCALD|pc|chr8:102069988:102070106:-	0	-
#Deleted in new
chr8	102234724	102234845	ENSG00000048392.11|RRM2B|pc|chr8:102234724:102234845:-	0	-
#Deleted in new
chr8	102243608	102244121	ENSG00000246263.2|UBR5-AS1|lncRNA|chr8:102243608:102244121:+	0	+
#Deleted in new
chr8	102244004	102244121	ENSG00000246263.2|UBR5-AS1|lncRNA|chr8:102244004:102244121:+	0	+
#Partially deleted in new
chr8	102256391	102257821	ENSG00000272037.1|AP002907.1|lncRNA|chr8:102256391:102257821:+	0	+
#Deleted in new
chr8	102261145	102261259	ENSG00000104517.12|UBR5|pc|chr8:102261145:102261259:-	0	-
#Partially deleted in new
chr8	102267092	102268718	ENSG00000104517.12|UBR5|pc|chr8:102267092:102268718:-	0	-
#Deleted in new
chr8	102528739	102528855	ENSG00000253633.1|AP002852.2|lncRNA|chr8:102528739:102528855:+	0	+
#Deleted in new
chr8	102528754	102528855	ENSG00000253633.1|AP002852.2|lncRNA|chr8:102528754:102528855:+	0	+
#Partially deleted in new
chr8	102533754	102533865	ENSG00000253633.1|AP002852.2|lncRNA|chr8:102533754:102533865:+	0	+
#Deleted in new
chr8	102538383	102538668	ENSG00000253633.1|AP002852.2|lncRNA|chr8:102538383:102538668:+	0	+
#Deleted in new
chr8	102666202	102666339	ENSG00000283959.1|AP002851.1|lncRNA|chr8:102666202:102666339:+	0	+
#Deleted in new
chr8	102683579	102683754	ENSG00000283959.1|AP002851.1|lncRNA|chr8:102683579:102683754:+	0	+
#Deleted in new
chr8	102830125	102830227	ENSG00000155096.13|AZIN1|pc|chr8:102830125:102830227:-	0	-
#Deleted in new
chr8	102854454	102854526	ENSG00000253385.1|AP003696.1|lncRNA|chr8:102854454:102854526:+	0	+
#Deleted in new
chr8	102855377	102856075	ENSG00000253385.1|AP003696.1|lncRNA|chr8:102855377:102856075:+	0	+
#Deleted in new
chr8	102872276	102872412	ENSG00000155096.13|AZIN1|pc|chr8:102872276:102872412:-	0	-
#Deleted in new
chr8	102879894	102880058	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102879894:102880058:+	0	+
#Deleted in new
chr8	102879894	102880214	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102879894:102880214:+	0	+
#Deleted in new
chr8	102879897	102880058	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102879897:102880058:+	0	+
#Deleted in new
chr8	102879915	102880058	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102879915:102880058:+	0	+
#Deleted in new
chr8	102885131	102885589	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102885131:102885589:+	0	+
#Deleted in new
chr8	102891875	102892341	ENSG00000253263.1|AP003354.1|lncRNA|chr8:102891875:102892341:+	0	+
#Deleted in new
chr8	102893541	102893608	ENSG00000253263.1|AP003354.1|lncRNA|chr8:102893541:102893608:+	0	+
#Deleted in new
chr8	102893802	102893864	ENSG00000155096.13|AZIN1|pc|chr8:102893802:102893864:-	0	-
#Deleted in new
chr8	102903791	102903877	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102903791:102903877:+	0	+
#Deleted in new
chr8	102904223	102904385	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102904223:102904385:+	0	+
#Deleted in new
chr8	102904223	102904502	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102904223:102904502:+	0	+
#Deleted in new
chr8	102904274	102904385	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102904274:102904385:+	0	+
#Deleted in new
chr8	102925031	102925123	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102925031:102925123:+	0	+
#Deleted in new
chr8	102930181	102930518	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102930181:102930518:+	0	+
#Deleted in new
chr8	102941622	102941698	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102941622:102941698:+	0	+
#Deleted in new
chr8	102941920	102941965	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102941920:102941965:+	0	+
#Deleted in new
chr8	102941920	102942053	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102941920:102942053:+	0	+
#Deleted in new
chr8	102967596	102967673	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102967596:102967673:+	0	+
#Deleted in new
chr8	102972320	102972371	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102972320:102972371:+	0	+
#Deleted in new
chr8	102977586	102977681	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102977586:102977681:+	0	+
#Deleted in new
chr8	102977586	102977738	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102977586:102977738:+	0	+
#Deleted in new
chr8	102977586	102977786	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102977586:102977786:+	0	+
#Deleted in new
chr8	102977586	102977876	ENSG00000253320.5|AZIN1-AS1|lncRNA|chr8:102977586:102977876:+	0	+
#Deleted in new
chr8	102978784	102978955	ENSG00000254281.1|AP003354.2|lncRNA|chr8:102978784:102978955:+	0	+
#Deleted in new
chr8	102992249	102992407	ENSG00000254281.1|AP003354.2|lncRNA|chr8:102992249:102992407:+	0	+
#Partially deleted in new
chr8	102995624	102995682	ENSG00000254281.1|AP003354.2|lncRNA|chr8:102995624:102995682:+	0	+
#Partially deleted in new
chr8	103020186	103020358	ENSG00000254236.1|AP003550.1|lncRNA|chr8:103020186:103020358:-	0	-
#Deleted in new
chr8	103121031	103121213	ENSG00000250929.2|LINC01181|lncRNA|chr8:103121031:103121213:+	0	+
#Deleted in new
chr8	103153138	103153310	ENSG00000164929.16|BAALC|pc|chr8:103153138:103153310:+	0	+
#Partially deleted in new
chr8	103165508	103166296	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103165508:103166296:-	0	-
#Partially deleted in new
chr8	103165824	103166296	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103165824:103166296:-	0	-
#Partially deleted in new
chr8	103165928	103166296	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103165928:103166296:-	0	-
#Deleted in new
chr8	103183366	103183449	ENSG00000164929.16|BAALC|pc|chr8:103183366:103183449:+	0	+
#Deleted in new
chr8	103198098	103198160	ENSG00000164929.16|BAALC|pc|chr8:103198098:103198160:+	0	+
#Deleted in new
chr8	103219464	103219554	ENSG00000164929.16|BAALC|pc|chr8:103219464:103219554:+	0	+
#Deleted in new
chr8	103234279	103234372	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103234279:103234372:-	0	-
#Partially deleted in new
chr8	103245777	103246684	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103245777:103246684:-	0	-
#Deleted in new
chr8	103246293	103246684	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103246293:103246684:-	0	-
#Deleted in new
chr8	103246472	103246684	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103246472:103246684:-	0	-
#Deleted in new
chr8	1032585	1032931	ENSG00000198010.12|DLGAP2|pc|chr8:1032585:1032931:+	0	+
#Deleted in new
chr8	103267241	103267520	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103267241:103267520:-	0	-
#Deleted in new
chr8	103267395	103267520	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103267395:103267520:-	0	-
#Deleted in new
chr8	103268267	103268472	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103268267:103268472:-	0	-
#Deleted in new
chr8	103268390	103268472	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103268390:103268472:-	0	-
#Deleted in new
chr8	103268691	103268843	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103268691:103268843:-	0	-
#Deleted in new
chr8	103277977	103278021	ENSG00000247081.7|BAALC-AS1|lncRNA|chr8:103277977:103278021:-	0	-
#Partially deleted in new
chr8	103377137	103377323	ENSG00000164932.12|CTHRC1|pc|chr8:103377137:103377323:+	0	+
#Partially deleted in new
chr8	103383077	103383854	ENSG00000266289.1|AC012213.3|lncRNA|chr8:103383077:103383854:-	0	-
#Partially deleted in new
chr8	103442794	103443450	ENSG00000164934.13|DCAF13|pc|chr8:103442794:103443450:+	0	+
#Partially deleted in new
chr8	103442794	103443453	ENSG00000164934.13|DCAF13|pc|chr8:103442794:103443453:+	0	+
#Partially deleted in new
chr8	103481265	103481619	ENSG00000271830.1|AC012213.4|lncRNA|chr8:103481265:103481619:-	0	-
#Deleted in new
chr8	103483397	103483515	ENSG00000253477.5|AC012213.1|lncRNA|chr8:103483397:103483515:-	0	-
#Deleted in new
chr8	103483422	103483515	ENSG00000253477.5|AC012213.1|lncRNA|chr8:103483422:103483515:-	0	-
#Deleted in new
chr8	103487560	103487681	ENSG00000253477.5|AC012213.1|lncRNA|chr8:103487560:103487681:-	0	-
#Deleted in new
chr8	103489696	103489849	ENSG00000253477.5|AC012213.1|lncRNA|chr8:103489696:103489849:-	0	-
#Deleted in new
chr8	103920699	103920998	ENSG00000176406.22|RIMS2|pc|chr8:103920699:103920998:+	0	+
#Partially deleted in new
chr8	103975349	103977471	ENSG00000176406.22|RIMS2|pc|chr8:103975349:103977471:+	0	+
#Split in new
chr8	10433671	10438312	ENSG00000261451.1|AC104964.2|lncRNA|chr8:10433671:10438312:+	0	+
#Partially deleted in new
chr8	104420712	104421500	ENSG00000179577.3|AP003471.1|lncRNA|chr8:104420712:104421500:-	0	-
#Deleted in new
chr8	104590732	104590768	ENSG00000169946.13|ZFPM2|pc|chr8:104590732:104590768:+	0	+
#Deleted in new
chr8	10477122	10477294	ENSG00000253641.5|LINCR-0001|lncRNA|chr8:10477122:10477294:+	0	+
#Deleted in new
chr8	10477198	10477283	ENSG00000253641.5|LINCR-0001|lncRNA|chr8:10477198:10477283:+	0	+
#Deleted in new
chr8	10477490	10477781	ENSG00000253678.1|AC104964.1|lncRNA|chr8:10477490:10477781:-	0	-
#Deleted in new
chr8	10477760	10477898	ENSG00000253641.5|LINCR-0001|lncRNA|chr8:10477760:10477898:+	0	+
#Deleted in new
chr8	10477869	10477898	ENSG00000253641.5|LINCR-0001|lncRNA|chr8:10477869:10477898:+	0	+
#Deleted in new
chr8	10480545	10480986	ENSG00000253641.5|LINCR-0001|lncRNA|chr8:10480545:10480986:+	0	+
#Deleted in new
chr8	10481860	10481974	ENSG00000253641.5|LINCR-0001|lncRNA|chr8:10481860:10481974:+	0	+
#Deleted in new
chr8	104827356	104827478	ENSG00000169946.13|ZFPM2|pc|chr8:104827356:104827478:+	0	+
#Deleted in new
chr8	104833324	104833445	ENSG00000169946.13|ZFPM2|pc|chr8:104833324:104833445:+	0	+
#Deleted in new
chr8	10486806	10489666	ENSG00000272505.1|AC104964.3|lncRNA|chr8:10486806:10489666:+	0	+
#Deleted in new
chr8	105188535	105188606	ENSG00000254041.1|AC021546.1|lncRNA|chr8:105188535:105188606:-	0	-
#Deleted in new
chr8	105246292	105246529	ENSG00000169946.13|ZFPM2|pc|chr8:105246292:105246529:+	0	+
#Deleted in new
chr8	105387145	105387925	ENSG00000169946.13|ZFPM2|pc|chr8:105387145:105387925:+	0	+
#Deleted in new
chr8	10540257	10541555	ENSG00000184647.10|PRSS55|pc|chr8:10540257:10541555:+	0	+
#Deleted in new
chr8	10544971	10545198	ENSG00000184647.10|PRSS55|pc|chr8:10544971:10545198:+	0	+
#Deleted in new
chr8	105451557	105451764	ENSG00000169946.13|ZFPM2|pc|chr8:105451557:105451764:+	0	+
#Deleted in new
chr8	10547429	10547557	ENSG00000253649.3|PRSS51|pc|chr8:10547429:10547557:-	0	-
#Deleted in new
chr8	10547429	10547585	ENSG00000253649.3|PRSS51|pc|chr8:10547429:10547585:-	0	-
#Deleted in new
chr8	10553942	10554166	ENSG00000184647.10|PRSS55|pc|chr8:10553942:10554166:+	0	+
#Deleted in new
chr8	105675902	105676021	ENSG00000254141.1|AC103853.2|lncRNA|chr8:105675902:105676021:+	0	+
#Deleted in new
chr8	105784804	105785217	ENSG00000251003.7|ZFPM2-AS1|lncRNA|chr8:105784804:105785217:-	0	-
#Deleted in new
chr8	105785003	105785217	ENSG00000251003.7|ZFPM2-AS1|lncRNA|chr8:105785003:105785217:-	0	-
#Deleted in new
chr8	105785054	105785217	ENSG00000251003.7|ZFPM2-AS1|lncRNA|chr8:105785054:105785217:-	0	-
#Partially deleted in new
chr8	105796768	105796906	ENSG00000169946.13|ZFPM2|pc|chr8:105796768:105796906:+	0	+
#Deleted in new
chr8	105796939	105797224	ENSG00000251003.7|ZFPM2-AS1|lncRNA|chr8:105796939:105797224:-	0	-
#Deleted in new
chr8	105798090	105798442	ENSG00000251003.7|ZFPM2-AS1|lncRNA|chr8:105798090:105798442:-	0	-
#Deleted in new
chr8	105798324	105798442	ENSG00000251003.7|ZFPM2-AS1|lncRNA|chr8:105798324:105798442:-	0	-
#Deleted in new
chr8	105798326	105798442	ENSG00000251003.7|ZFPM2-AS1|lncRNA|chr8:105798326:105798442:-	0	-
#Deleted in new
chr8	105826569	105826740	ENSG00000253526.1|AC090802.1|lncRNA|chr8:105826569:105826740:+	0	+
#Deleted in new
chr8	105911804	105911869	ENSG00000251003.7|ZFPM2-AS1|lncRNA|chr8:105911804:105911869:-	0	-
#Deleted in new
chr8	105927641	105927717	ENSG00000251003.7|ZFPM2-AS1|lncRNA|chr8:105927641:105927717:-	0	-
#Deleted in new
chr8	105927650	105927717	ENSG00000251003.7|ZFPM2-AS1|lncRNA|chr8:105927650:105927717:-	0	-
#Deleted in new
chr8	106060134	106060234	ENSG00000251003.7|ZFPM2-AS1|lncRNA|chr8:106060134:106060234:-	0	-
#Deleted in new
chr8	10621095	10621772	ENSG00000183638.5|RP1L1|pc|chr8:10621095:10621772:-	0	-
#Deleted in new
chr8	106522720	106522833	ENSG00000253582.1|AC090579.1|lncRNA|chr8:106522720:106522833:-	0	-
#Deleted in new
chr8	106682492	106682545	ENSG00000164830.18|OXR1|pc|chr8:106682492:106682545:+	0	+
#Deleted in new
chr8	10675570	10675838	ENSG00000171060.10|C8orf74|pc|chr8:10675570:10675838:+	0	+
#Deleted in new
chr8	10679894	10679999	ENSG00000171060.10|C8orf74|pc|chr8:10679894:10679999:+	0	+
#Deleted in new
chr8	10687079	10687271	ENSG00000171060.10|C8orf74|pc|chr8:10687079:10687271:+	0	+
#Deleted in new
chr8	10711956	10712187	ENSG00000183638.5|RP1L1|pc|chr8:10711956:10712187:-	0	-
#Deleted in new
chr8	107336383	107336522	ENSG00000154188.9|ANGPT1|pc|chr8:107336383:107336522:-	0	-
#Deleted in new
chr8	10754201	10754318	ENSG00000248896.2|AC105001.1|lncRNA|chr8:10754201:10754318:+	0	+
#Partially deleted in new
chr8	107989350	107989555	ENSG00000147655.10|RSPO2|pc|chr8:107989350:107989555:-	0	-
#Deleted in new
chr8	108221487	108221603	ENSG00000104408.9|EIF3E|pc|chr8:108221487:108221603:-	0	-
#Deleted in new
chr8	108226199	108226323	ENSG00000253754.1|AC087620.1|lncRNA|chr8:108226199:108226323:+	0	+
#Deleted in new
chr8	108227221	108227544	ENSG00000253754.1|AC087620.1|lncRNA|chr8:108227221:108227544:+	0	+
#Deleted in new
chr8	108227794	108227932	ENSG00000104408.9|EIF3E|pc|chr8:108227794:108227932:-	0	-
#Deleted in new
chr8	108243292	108243463	ENSG00000104408.9|EIF3E|pc|chr8:108243292:108243463:-	0	-
#Deleted in new
chr8	108309021	108309463	ENSG00000104408.9|EIF3E|pc|chr8:108309021:108309463:-	0	-
#Deleted in new
chr8	108309335	108309463	ENSG00000104408.9|EIF3E|pc|chr8:108309335:108309463:-	0	-
#Deleted in new
chr8	10833487	10833781	ENSG00000254093.8|PINX1|pc|chr8:10833487:10833781:-	0	-
#Deleted in new
chr8	10840575	10840628	ENSG00000253695.1|AC011008.1|lncRNA|chr8:10840575:10840628:+	0	+
#Deleted in new
chr8	10841632	10841734	ENSG00000253695.1|AC011008.1|lncRNA|chr8:10841632:10841734:+	0	+
#Deleted in new
chr8	108421996	108422089	ENSG00000104408.9|EIF3E|pc|chr8:108421996:108422089:-	0	-
#Deleted in new
chr8	108435153	108435333	ENSG00000104408.9|EIF3E|pc|chr8:108435153:108435333:-	0	-
#Deleted in new
chr8	108446161	108446301	ENSG00000104412.7|EMC2|pc|chr8:108446161:108446301:+	0	+
#Deleted in new
chr8	10846217	10846501	ENSG00000253695.1|AC011008.1|lncRNA|chr8:10846217:10846501:+	0	+
#Deleted in new
chr8	108655292	108655437	ENSG00000164841.4|TMEM74|pc|chr8:108655292:108655437:-	0	-
#Deleted in new
chr8	108895028	108895135	ENSG00000253796.1|AC104248.1|lncRNA|chr8:108895028:108895135:-	0	-
#Deleted in new
chr8	108908216	108908271	ENSG00000253796.1|AC104248.1|lncRNA|chr8:108908216:108908271:-	0	-
#Deleted in new
chr8	108916046	108916091	ENSG00000253796.1|AC104248.1|lncRNA|chr8:108916046:108916091:-	0	-
#Deleted in new
chr8	109043676	109043739	ENSG00000253796.1|AC104248.1|lncRNA|chr8:109043676:109043739:-	0	-
#Deleted in new
chr8	109044055	109044127	ENSG00000253796.1|AC104248.1|lncRNA|chr8:109044055:109044127:-	0	-
#Partially deleted in new
chr8	109298597	109298929	ENSG00000250267.2|AC021237.1|lncRNA|chr8:109298597:109298929:+	0	+
#Deleted in new
chr8	109329804	109329892	ENSG00000120526.10|NUDCD1|pc|chr8:109329804:109329892:-	0	-
#Deleted in new
chr8	109329804	109329934	ENSG00000120526.10|NUDCD1|pc|chr8:109329804:109329934:-	0	-
#Deleted in new
chr8	109342689	109342809	ENSG00000120533.12|ENY2|pc|chr8:109342689:109342809:+	0	+
#Partially deleted in new
chr8	109580878	109581058	ENSG00000147642.16|SYBU|pc|chr8:109580878:109581058:-	0	-
#Deleted in new
chr8	11002387	11002481	ENSG00000171044.10|XKR6|pc|chr8:11002387:11002481:-	0	-
#Deleted in new
chr8	110334742	110335309	ENSG00000253956.1|AC073023.1|lncRNA|chr8:110334742:110335309:-	0	-
#Deleted in new
chr8	110344452	110344595	ENSG00000253956.1|AC073023.1|lncRNA|chr8:110344452:110344595:-	0	-
#Deleted in new
chr8	110349544	110349607	ENSG00000253956.1|AC073023.1|lncRNA|chr8:110349544:110349607:-	0	-
#Deleted in new
chr8	110609240	110609306	ENSG00000253122.1|AC025366.1|lncRNA|chr8:110609240:110609306:+	0	+
#Deleted in new
chr8	110627365	110627457	ENSG00000253122.1|AC025366.1|lncRNA|chr8:110627365:110627457:+	0	+
#Deleted in new
chr8	11066849	11067089	ENSG00000254839.1|AF131215.3|lncRNA|chr8:11066849:11067089:-	0	-
#Deleted in new
chr8	110766862	110766916	ENSG00000253717.1|AP005357.1|lncRNA|chr8:110766862:110766916:+	0	+
#Deleted in new
chr8	110772337	110772759	ENSG00000253717.1|AP005357.1|lncRNA|chr8:110772337:110772759:+	0	+
#Deleted in new
chr8	110937689	110937727	ENSG00000253877.5|LINC01608|lncRNA|chr8:110937689:110937727:-	0	-
#Deleted in new
chr8	110982949	110983140	ENSG00000253877.5|LINC01608|lncRNA|chr8:110982949:110983140:-	0	-
#Deleted in new
chr8	111003413	111003450	ENSG00000253877.5|LINC01608|lncRNA|chr8:111003413:111003450:-	0	-
#Deleted in new
chr8	111004660	111004769	ENSG00000253877.5|LINC01608|lncRNA|chr8:111004660:111004769:-	0	-
#Deleted in new
chr8	111005529	111005649	ENSG00000253877.5|LINC01608|lncRNA|chr8:111005529:111005649:-	0	-
#Deleted in new
chr8	111014903	111015032	ENSG00000253877.5|LINC01608|lncRNA|chr8:111014903:111015032:-	0	-
#Deleted in new
chr8	111027305	111027392	ENSG00000253877.5|LINC01608|lncRNA|chr8:111027305:111027392:-	0	-
#Deleted in new
chr8	111027305	111027433	ENSG00000253877.5|LINC01608|lncRNA|chr8:111027305:111027433:-	0	-
#Deleted in new
chr8	111098960	111099139	ENSG00000253103.1|LINC01609|lncRNA|chr8:111098960:111099139:-	0	-
#Deleted in new
chr8	111113431	111113520	ENSG00000253103.1|LINC01609|lncRNA|chr8:111113431:111113520:-	0	-
#Deleted in new
chr8	111116534	111116600	ENSG00000253103.1|LINC01609|lncRNA|chr8:111116534:111116600:-	0	-
#Deleted in new
chr8	111179192	111179358	ENSG00000253489.1|AC009930.1|lncRNA|chr8:111179192:111179358:-	0	-
#Deleted in new
chr8	111179847	111179872	ENSG00000253489.1|AC009930.1|lncRNA|chr8:111179847:111179872:-	0	-
#Deleted in new
chr8	111183291	111183735	ENSG00000253103.1|LINC01609|lncRNA|chr8:111183291:111183735:-	0	-
#Partially deleted in new
chr8	11123380	11124817	ENSG00000254936.4|AF131215.4|lncRNA|chr8:11123380:11124817:-	0	-
#Deleted in new
chr8	11125760	11126064	ENSG00000254936.4|AF131215.4|lncRNA|chr8:11125760:11126064:-	0	-
#Deleted in new
chr8	11136897	11138607	ENSG00000254556.1|AF131215.2|lncRNA|chr8:11136897:11138607:-	0	-
#Deleted in new
chr8	111376638	111376690	ENSG00000253434.5|LINC02237|lncRNA|chr8:111376638:111376690:+	0	+
#Deleted in new
chr8	111376662	111376710	ENSG00000253434.5|LINC02237|lncRNA|chr8:111376662:111376710:+	0	+
#Deleted in new
chr8	111387677	111387742	ENSG00000253434.5|LINC02237|lncRNA|chr8:111387677:111387742:+	0	+
#Deleted in new
chr8	111416514	111416542	ENSG00000253434.5|LINC02237|lncRNA|chr8:111416514:111416542:+	0	+
#Deleted in new
chr8	111466177	111466300	ENSG00000253434.5|LINC02237|lncRNA|chr8:111466177:111466300:+	0	+
#Partially deleted in new
chr8	111470380	111470617	ENSG00000253434.5|LINC02237|lncRNA|chr8:111470380:111470617:+	0	+
#Deleted in new
chr8	111513046	111513135	ENSG00000253434.5|LINC02237|lncRNA|chr8:111513046:111513135:+	0	+
#Deleted in new
chr8	111515011	111515336	ENSG00000253434.5|LINC02237|lncRNA|chr8:111515011:111515336:+	0	+
#Deleted in new
chr8	111542048	111542223	ENSG00000253434.5|LINC02237|lncRNA|chr8:111542048:111542223:+	0	+
#Deleted in new
chr8	111542918	111542973	ENSG00000253434.5|LINC02237|lncRNA|chr8:111542918:111542973:+	0	+
#Deleted in new
chr8	111742011	111742083	ENSG00000254262.1|AC022360.2|lncRNA|chr8:111742011:111742083:+	0	+
#Deleted in new
chr8	111745441	111745607	ENSG00000254262.1|AC022360.2|lncRNA|chr8:111745441:111745607:+	0	+
#Deleted in new
chr8	111745517	111745607	ENSG00000254262.1|AC022360.2|lncRNA|chr8:111745517:111745607:+	0	+
#Deleted in new
chr8	111756305	111756400	ENSG00000254262.1|AC022360.2|lncRNA|chr8:111756305:111756400:+	0	+
#Deleted in new
chr8	111756509	111756632	ENSG00000254262.1|AC022360.2|lncRNA|chr8:111756509:111756632:+	0	+
#Deleted in new
chr8	111756509	111756826	ENSG00000254262.1|AC022360.2|lncRNA|chr8:111756509:111756826:+	0	+
#Deleted in new
chr8	11194435	11195221	ENSG00000171044.10|XKR6|pc|chr8:11194435:11195221:-	0	-
#Deleted in new
chr8	11267788	11267865	ENSG00000236827.1|LINC00529|lncRNA|chr8:11267788:11267865:-	0	-
#Partially deleted in new
chr8	11294774	11295302	ENSG00000104643.9|MTMR9|pc|chr8:11294774:11295302:+	0	+
#Deleted in new
chr8	11297899	11297951	ENSG00000104643.9|MTMR9|pc|chr8:11297899:11297951:+	0	+
#Partially deleted in new
chr8	113309204	113314793	ENSG00000164796.17|CSMD3|pc|chr8:113309204:113314793:-	0	-
#Deleted in new
chr8	11345747	11346640	ENSG00000255020.1|AF131216.3|lncRNA|chr8:11345747:11346640:-	0	-
#Deleted in new
chr8	11347296	11347502	ENSG00000255020.1|AF131216.3|lncRNA|chr8:11347296:11347502:-	0	-
#Deleted in new
chr8	113615503	113615688	ENSG00000253207.3|AC103993.1|lncRNA|chr8:113615503:113615688:+	0	+
#Deleted in new
chr8	113615503	113616958	ENSG00000253207.3|AC103993.1|lncRNA|chr8:113615503:113616958:+	0	+
#Deleted in new
chr8	113616583	113616958	ENSG00000253207.3|AC103993.1|lncRNA|chr8:113616583:113616958:+	0	+
#Deleted in new
chr8	11368401	11368452	ENSG00000184608.8|FAM167A-AS1|lncRNA|chr8:11368401:11368452:+	0	+
#Deleted in new
chr8	1137298	1137777	ENSG00000198010.12|DLGAP2|pc|chr8:1137298:1137777:+	0	+
#Deleted in new
chr8	11383812	11384001	ENSG00000184608.8|FAM167A-AS1|lncRNA|chr8:11383812:11384001:+	0	+
#Deleted in new
chr8	11390423	11390735	ENSG00000184608.8|FAM167A-AS1|lncRNA|chr8:11390423:11390735:+	0	+
#Deleted in new
chr8	11394123	11394335	ENSG00000184608.8|FAM167A-AS1|lncRNA|chr8:11394123:11394335:+	0	+
#Deleted in new
chr8	11401065	11401165	ENSG00000184608.8|FAM167A-AS1|lncRNA|chr8:11401065:11401165:+	0	+
#Deleted in new
chr8	11404540	11404702	ENSG00000184608.8|FAM167A-AS1|lncRNA|chr8:11404540:11404702:+	0	+
#Deleted in new
chr8	114282066	114282294	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114282066:114282294:+	0	+
#Deleted in new
chr8	114282068	114282294	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114282068:114282294:+	0	+
#Deleted in new
chr8	114282071	114282294	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114282071:114282294:+	0	+
#Deleted in new
chr8	114282072	114282294	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114282072:114282294:+	0	+
#Deleted in new
chr8	114282135	114282294	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114282135:114282294:+	0	+
#Deleted in new
chr8	114284218	114284514	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114284218:114284514:+	0	+
#Deleted in new
chr8	114284218	114284533	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114284218:114284533:+	0	+
#Deleted in new
chr8	114284252	114284514	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114284252:114284514:+	0	+
#Deleted in new
chr8	114284252	114284533	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114284252:114284533:+	0	+
#Deleted in new
chr8	114287721	114287996	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114287721:114287996:+	0	+
#Deleted in new
chr8	114295465	114295624	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114295465:114295624:+	0	+
#Deleted in new
chr8	114295465	114295807	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114295465:114295807:+	0	+
#Deleted in new
chr8	114295465	114295813	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114295465:114295813:+	0	+
#Deleted in new
chr8	114295465	114295839	ENSG00000254339.5|AC064802.1|lncRNA|chr8:114295465:114295839:+	0	+
#Deleted in new
chr8	11434829	11435001	ENSG00000184608.8|FAM167A-AS1|lncRNA|chr8:11434829:11435001:+	0	+
#Deleted in new
chr8	11434829	11435102	ENSG00000184608.8|FAM167A-AS1|lncRNA|chr8:11434829:11435102:+	0	+
#Deleted in new
chr8	11438039	11438210	ENSG00000184608.8|FAM167A-AS1|lncRNA|chr8:11438039:11438210:+	0	+
#Deleted in new
chr8	11438435	11438657	ENSG00000184608.8|FAM167A-AS1|lncRNA|chr8:11438435:11438657:+	0	+
#Deleted in new
chr8	11438435	11438658	ENSG00000184608.8|FAM167A-AS1|lncRNA|chr8:11438435:11438658:+	0	+
#Deleted in new
chr8	11474608	11474715	ENSG00000154319.14|FAM167A|pc|chr8:11474608:11474715:-	0	-
#Deleted in new
chr8	115492187	115492221	ENSG00000104447.12|TRPS1|pc|chr8:115492187:115492221:-	0	-
#Deleted in new
chr8	11552487	11552991	ENSG00000269954.1|AC022239.4|lncRNA|chr8:11552487:11552991:-	0	-
#Deleted in new
chr8	11553223	11553580	ENSG00000254774.1|AC022239.1|lncRNA|chr8:11553223:11553580:-	0	-
#Partially deleted in new
chr8	11559783	11560020	ENSG00000255354.1|AC022239.2|lncRNA|chr8:11559783:11560020:-	0	-
#Deleted in new
chr8	11580469	11581342	ENSG00000170983.3|LINC00208|lncRNA|chr8:11580469:11581342:+	0	+
#Deleted in new
chr8	115950510	115950739	ENSG00000249917.2|LINC00536|lncRNA|chr8:115950510:115950739:-	0	-
#Deleted in new
chr8	116119688	116119783	ENSG00000249917.2|LINC00536|lncRNA|chr8:116119688:116119783:-	0	-
#Deleted in new
chr8	116130197	116130280	ENSG00000249917.2|LINC00536|lncRNA|chr8:116130197:116130280:-	0	-
#Deleted in new
chr8	116273480	116273712	ENSG00000249917.2|LINC00536|lncRNA|chr8:116273480:116273712:-	0	-
#Deleted in new
chr8	116403644	116403757	ENSG00000253672.1|AC105177.1|lncRNA|chr8:116403644:116403757:-	0	-
#Deleted in new
chr8	116697052	116697237	ENSG00000147677.10|EIF3H|pc|chr8:116697052:116697237:-	0	-
#Deleted in new
chr8	116734276	116734324	ENSG00000147677.10|EIF3H|pc|chr8:116734276:116734324:-	0	-
#Deleted in new
chr8	116734276	116734354	ENSG00000147677.10|EIF3H|pc|chr8:116734276:116734354:-	0	-
#Deleted in new
chr8	116737236	116737287	ENSG00000147677.10|EIF3H|pc|chr8:116737236:116737287:-	0	-
#Deleted in new
chr8	116737712	116737715	ENSG00000147677.10|EIF3H|pc|chr8:116737712:116737715:-	0	-
#Partially deleted in new
chr8	116771455	116774690	ENSG00000147679.11|UTP23|pc|chr8:116771455:116774690:+	0	+
#Deleted in new
chr8	116875420	116876868	ENSG00000253327.2|RAD21-AS1|lncRNA|chr8:116875420:116876868:+	0	+
#Deleted in new
chr8	116950272	116950385	ENSG00000164756.12|SLC30A8|pc|chr8:116950272:116950385:+	0	+
#Deleted in new
chr8	116950489	116950568	ENSG00000164756.12|SLC30A8|pc|chr8:116950489:116950568:+	0	+
#Deleted in new
chr8	116950948	116951119	ENSG00000164756.12|SLC30A8|pc|chr8:116950948:116951119:+	0	+
#Deleted in new
chr8	116950950	116951119	ENSG00000164756.12|SLC30A8|pc|chr8:116950950:116951119:+	0	+
#Deleted in new
chr8	116951018	116951119	ENSG00000164756.12|SLC30A8|pc|chr8:116951018:116951119:+	0	+
#Partially deleted in new
chr8	117006990	117007113	ENSG00000164756.12|SLC30A8|pc|chr8:117006990:117007113:+	0	+
#Deleted in new
chr8	11761255	11763223	ENSG00000255394.4|C8orf49|lncRNA|chr8:11761255:11763223:+	0	+
#Deleted in new
chr8	11761386	11762800	ENSG00000255394.4|C8orf49|lncRNA|chr8:11761386:11762800:+	0	+
#Deleted in new
chr8	11769638	11769791	ENSG00000154328.15|NEIL2|pc|chr8:11769638:11769791:+	0	+
#Deleted in new
chr8	11769698	11769791	ENSG00000154328.15|NEIL2|pc|chr8:11769698:11769791:+	0	+
#Deleted in new
chr8	11769708	11769791	ENSG00000154328.15|NEIL2|pc|chr8:11769708:11769791:+	0	+
#Deleted in new
chr8	11769709	11769791	ENSG00000154328.15|NEIL2|pc|chr8:11769709:11769791:+	0	+
#Partially deleted in new
chr8	11769738	11770335	ENSG00000154328.15|NEIL2|pc|chr8:11769738:11770335:+	0	+
#Deleted in new
chr8	11795572	11796011	ENSG00000079459.12|FDFT1|pc|chr8:11795572:11796011:+	0	+
#Deleted in new
chr8	11797927	11798147	ENSG00000255046.1|AC069185.1|lncRNA|chr8:11797927:11798147:-	0	-
#Deleted in new
chr8	11801697	11802020	ENSG00000255046.1|AC069185.1|lncRNA|chr8:11801697:11802020:-	0	-
#Partially deleted in new
chr8	11801921	11802512	ENSG00000255046.1|AC069185.1|lncRNA|chr8:11801921:11802512:-	0	-
#Partially deleted in new
chr8	11802238	11802455	ENSG00000079459.12|FDFT1|pc|chr8:11802238:11802455:+	0	+
#Partially deleted in new
chr8	11802257	11802455	ENSG00000079459.12|FDFT1|pc|chr8:11802257:11802455:+	0	+
#Partially deleted in new
chr8	11807942	11808317	ENSG00000079459.12|FDFT1|pc|chr8:11807942:11808317:+	0	+
#Deleted in new
chr8	118295674	118295693	ENSG00000225885.6|AC023590.1|lncRNA|chr8:118295674:118295693:+	0	+
#Deleted in new
chr8	118295674	118295694	ENSG00000225885.6|AC023590.1|lncRNA|chr8:118295674:118295694:+	0	+
#Deleted in new
chr8	118375700	118375856	ENSG00000177570.13|SAMD12|pc|chr8:118375700:118375856:-	0	-
#Deleted in new
chr8	118394784	118394992	ENSG00000225885.6|AC023590.1|lncRNA|chr8:118394784:118394992:+	0	+
#Deleted in new
chr8	11842523	11842682	ENSG00000164733.20|CTSB|pc|chr8:11842523:11842682:-	0	-
#Deleted in new
chr8	11844014	11844241	ENSG00000164733.20|CTSB|pc|chr8:11844014:11844241:-	0	-
#Deleted in new
chr8	11844052	11844241	ENSG00000164733.20|CTSB|pc|chr8:11844052:11844241:-	0	-
#Deleted in new
chr8	11844093	11844241	ENSG00000164733.20|CTSB|pc|chr8:11844093:11844241:-	0	-
#Deleted in new
chr8	11846153	11846391	ENSG00000269899.1|AC025857.2|lncRNA|chr8:11846153:11846391:-	0	-
#Deleted in new
chr8	11848486	11848507	ENSG00000164733.20|CTSB|pc|chr8:11848486:11848507:-	0	-
#Deleted in new
chr8	11849997	11850047	ENSG00000164733.20|CTSB|pc|chr8:11849997:11850047:-	0	-
#Deleted in new
chr8	11854679	11854925	ENSG00000164733.20|CTSB|pc|chr8:11854679:11854925:-	0	-
#Deleted in new
chr8	11864375	11864463	ENSG00000164733.20|CTSB|pc|chr8:11864375:11864463:-	0	-
#Deleted in new
chr8	11864375	11864483	ENSG00000164733.20|CTSB|pc|chr8:11864375:11864483:-	0	-
#Deleted in new
chr8	11865463	11865584	ENSG00000164733.20|CTSB|pc|chr8:11865463:11865584:-	0	-
#Deleted in new
chr8	11867253	11867391	ENSG00000164733.20|CTSB|pc|chr8:11867253:11867391:-	0	-
#Deleted in new
chr8	11867253	11867526	ENSG00000164733.20|CTSB|pc|chr8:11867253:11867526:-	0	-
#Deleted in new
chr8	11867253	11867530	ENSG00000164733.20|CTSB|pc|chr8:11867253:11867530:-	0	-
#Deleted in new
chr8	11867253	11867693	ENSG00000164733.20|CTSB|pc|chr8:11867253:11867693:-	0	-
#Deleted in new
chr8	11867969	11868052	ENSG00000164733.20|CTSB|pc|chr8:11867969:11868052:-	0	-
#Deleted in new
chr8	11868000	11868040	ENSG00000164733.20|CTSB|pc|chr8:11868000:11868040:-	0	-
#Deleted in new
chr8	11868000	11868058	ENSG00000164733.20|CTSB|pc|chr8:11868000:11868058:-	0	-
#Deleted in new
chr8	11868000	11868070	ENSG00000164733.20|CTSB|pc|chr8:11868000:11868070:-	0	-
#Deleted in new
chr8	11868000	11868079	ENSG00000164733.20|CTSB|pc|chr8:11868000:11868079:-	0	-
#Deleted in new
chr8	11868000	11868087	ENSG00000164733.20|CTSB|pc|chr8:11868000:11868087:-	0	-
#Deleted in new
chr8	11868000	11868089	ENSG00000164733.20|CTSB|pc|chr8:11868000:11868089:-	0	-
#Deleted in new
chr8	11868000	11868106	ENSG00000164733.20|CTSB|pc|chr8:11868000:11868106:-	0	-
#Deleted in new
chr8	11868000	11868112	ENSG00000164733.20|CTSB|pc|chr8:11868000:11868112:-	0	-
#Deleted in new
chr8	11868000	11868114	ENSG00000164733.20|CTSB|pc|chr8:11868000:11868114:-	0	-
#Deleted in new
chr8	11868000	11868118	ENSG00000164733.20|CTSB|pc|chr8:11868000:11868118:-	0	-
#Deleted in new
chr8	11868000	11868229	ENSG00000164733.20|CTSB|pc|chr8:11868000:11868229:-	0	-
#Deleted in new
chr8	11868646	11868735	ENSG00000164733.20|CTSB|pc|chr8:11868646:11868735:-	0	-
#Deleted in new
chr8	11868670	11868713	ENSG00000164733.20|CTSB|pc|chr8:11868670:11868713:-	0	-
#Deleted in new
chr8	11868670	11868739	ENSG00000164733.20|CTSB|pc|chr8:11868670:11868739:-	0	-
#Deleted in new
chr8	11868876	11868917	ENSG00000164733.20|CTSB|pc|chr8:11868876:11868917:-	0	-
#Deleted in new
chr8	11868921	11869448	ENSG00000164733.20|CTSB|pc|chr8:11868921:11869448:-	0	-
#Deleted in new
chr8	118724518	118724628	ENSG00000281641.2|SAMD12-AS1|lncRNA|chr8:118724518:118724628:+	0	+
#Deleted in new
chr8	118764268	118764285	ENSG00000281641.2|SAMD12-AS1|lncRNA|chr8:118764268:118764285:+	0	+
#Partially deleted in new
chr8	118930487	118930768	ENSG00000164761.8|TNFRSF11B|pc|chr8:118930487:118930768:-	0	-
#Deleted in new
chr8	119009440	119009553	ENSG00000184374.2|COLEC10|pc|chr8:119009440:119009553:+	0	+
#Deleted in new
chr8	119165033	119165065	ENSG00000147676.13|MAL2|pc|chr8:119165033:119165065:+	0	+
#Deleted in new
chr8	119246729	119246815	ENSG00000253972.5|MAL2|lncRNA|chr8:119246729:119246815:-	0	-
#Deleted in new
chr8	119246729	119246836	ENSG00000253972.5|MAL2|lncRNA|chr8:119246729:119246836:-	0	-
#Deleted in new
chr8	119246729	119246843	ENSG00000253972.5|MAL2|lncRNA|chr8:119246729:119246843:-	0	-
#Deleted in new
chr8	119246729	119246848	ENSG00000253972.5|MAL2|lncRNA|chr8:119246729:119246848:-	0	-
#Deleted in new
chr8	119437956	119438007	ENSG00000253398.1|AC021733.1|lncRNA|chr8:119437956:119438007:-	0	-
#Deleted in new
chr8	119462286	119462350	ENSG00000253398.1|AC021733.1|lncRNA|chr8:119462286:119462350:-	0	-
#Deleted in new
chr8	119572619	119573147	ENSG00000136960.12|ENPP2|pc|chr8:119572619:119573147:-	0	-
#Deleted in new
chr8	119744880	119745036	ENSG00000064313.11|TAF2|pc|chr8:119744880:119745036:-	0	-
#Deleted in new
chr8	119767002	119767128	ENSG00000064313.11|TAF2|pc|chr8:119767002:119767128:-	0	-
#Partially deleted in new
chr8	119838735	119840385	ENSG00000279347.1|AC021945.1|lncRNA|chr8:119838735:119840385:-	0	-
#Deleted in new
chr8	119872477	119872523	ENSG00000245330.4|AP005717.1|lncRNA|chr8:119872477:119872523:-	0	-
#Deleted in new
chr8	11993173	11994122	ENSG00000205882.8|DEFB134|pc|chr8:11993173:11994122:-	0	-
#Deleted in new
chr8	11993927	11994122	ENSG00000205882.8|DEFB134|pc|chr8:11993927:11994122:-	0	-
#Deleted in new
chr8	11996193	11996312	ENSG00000205882.8|DEFB134|pc|chr8:11996193:11996312:-	0	-
#Deleted in new
chr8	120052179	120052395	ENSG00000254343.2|AC091563.1|lncRNA|chr8:120052179:120052395:+	0	+
#Deleted in new
chr8	120059779	120059871	ENSG00000187955.11|COL14A1|pc|chr8:120059779:120059871:+	0	+
#Deleted in new
chr8	120105582	120105627	ENSG00000187955.11|COL14A1|pc|chr8:120105582:120105627:+	0	+
#Deleted in new
chr8	120277484	120277865	ENSG00000187955.11|COL14A1|pc|chr8:120277484:120277865:+	0	+
#Deleted in new
chr8	120380760	120381174	ENSG00000172172.7|MRPL13|pc|chr8:120380760:120381174:-	0	-
#Deleted in new
chr8	120395436	120396125	ENSG00000172172.7|MRPL13|pc|chr8:120395436:120396125:-	0	-
#Deleted in new
chr8	120395846	120396125	ENSG00000172172.7|MRPL13|pc|chr8:120395846:120396125:-	0	-
#Deleted in new
chr8	120395847	120396125	ENSG00000172172.7|MRPL13|pc|chr8:120395847:120396125:-	0	-
#Deleted in new
chr8	120395958	120396125	ENSG00000172172.7|MRPL13|pc|chr8:120395958:120396125:-	0	-
#Partially deleted in new
chr8	120413990	120416079	ENSG00000172172.7|MRPL13|pc|chr8:120413990:120416079:-	0	-
#Partially deleted in new
chr8	120470819	120473950	ENSG00000172167.7|MTBP|pc|chr8:120470819:120473950:+	0	+
#Deleted in new
chr8	120765777	120765864	ENSG00000248318.1|AC104958.1|lncRNA|chr8:120765777:120765864:+	0	+
#Deleted in new
chr8	120768658	120769698	ENSG00000248318.1|AC104958.1|lncRNA|chr8:120768658:120769698:+	0	+
#Deleted in new
chr8	120913064	120913159	ENSG00000253619.1|AC068413.1|lncRNA|chr8:120913064:120913159:+	0	+
#Deleted in new
chr8	121043382	121043475	ENSG00000253619.1|AC068413.1|lncRNA|chr8:121043382:121043475:+	0	+
#Deleted in new
chr8	12104388	12104433	ENSG00000215343.7|ZNF705D|pc|chr8:12104388:12104433:+	0	+
#Deleted in new
chr8	12108122	12108205	ENSG00000215343.7|ZNF705D|pc|chr8:12108122:12108205:+	0	+
#Deleted in new
chr8	12108171	12108205	ENSG00000215343.7|ZNF705D|pc|chr8:12108171:12108205:+	0	+
#Deleted in new
chr8	121100829	121100899	ENSG00000253619.1|AC068413.1|lncRNA|chr8:121100829:121100899:+	0	+
#Deleted in new
chr8	12111431	12111514	ENSG00000215343.7|ZNF705D|pc|chr8:12111431:12111514:+	0	+
#Split in new
chr8	12112573	12115516	ENSG00000215343.7|ZNF705D|pc|chr8:12112573:12115516:+	0	+
#Deleted in new
chr8	12115781	12116325	ENSG00000255052.4|FAM66D|lncRNA|chr8:12115781:12116325:+	0	+
#Deleted in new
chr8	12145638	12145700	ENSG00000255052.4|FAM66D|lncRNA|chr8:12145638:12145700:+	0	+
#Deleted in new
chr8	121644265	121644693	ENSG00000248690.6|HAS2-AS1|lncRNA|chr8:121644265:121644693:+	0	+
#Deleted in new
chr8	121679125	121679257	ENSG00000248478.2|AC104233.1|lncRNA|chr8:121679125:121679257:+	0	+
#Deleted in new
chr8	121680276	121680441	ENSG00000254209.1|AC104233.2|lncRNA|chr8:121680276:121680441:-	0	-
#Deleted in new
chr8	121684484	121684562	ENSG00000254209.1|AC104233.2|lncRNA|chr8:121684484:121684562:-	0	-
#Deleted in new
chr8	12176822	12176965	ENSG00000255052.4|FAM66D|lncRNA|chr8:12176822:12176965:+	0	+
#Deleted in new
chr8	12177381	12177550	ENSG00000255052.4|FAM66D|lncRNA|chr8:12177381:12177550:+	0	+
#Partially deleted in new
chr8	12183120	12183706	ENSG00000186523.14|FAM86B1|pc|chr8:12183120:12183706:-	0	-
#Deleted in new
chr8	12188310	12188424	ENSG00000186523.14|FAM86B1|pc|chr8:12188310:12188424:-	0	-
#Deleted in new
chr8	121884723	121884884	ENSG00000254018.1|AC104036.1|lncRNA|chr8:121884723:121884884:+	0	+
#Deleted in new
chr8	121888824	121888977	ENSG00000254018.1|AC104036.1|lncRNA|chr8:121888824:121888977:+	0	+
#Deleted in new
chr8	121903438	121903540	ENSG00000254018.1|AC104036.1|lncRNA|chr8:121903438:121903540:+	0	+
#Partially deleted in new
chr8	12194466	12195437	ENSG00000255495.1|AC145124.1|lncRNA|chr8:12194466:12195437:+	0	+
#Deleted in new
chr8	121954639	121955148	ENSG00000254303.1|AC037486.1|lncRNA|chr8:121954639:121955148:-	0	-
#Deleted in new
chr8	121981616	121981737	ENSG00000254303.1|AC037486.1|lncRNA|chr8:121981616:121981737:-	0	-
#Deleted in new
chr8	122127024	122127184	ENSG00000254303.1|AC037486.1|lncRNA|chr8:122127024:122127184:-	0	-
#Deleted in new
chr8	122414331	122414555	ENSG00000255364.1|SMILR|lncRNA|chr8:122414331:122414555:-	0	-
#Deleted in new
chr8	122416824	122417022	ENSG00000255364.1|SMILR|lncRNA|chr8:122416824:122417022:-	0	-
#Deleted in new
chr8	122485514	122485695	ENSG00000255325.2|AC108136.1|lncRNA|chr8:122485514:122485695:-	0	-
#Deleted in new
chr8	122486432	122486611	ENSG00000255325.2|AC108136.1|lncRNA|chr8:122486432:122486611:-	0	-
#Deleted in new
chr8	122487386	122487466	ENSG00000255325.2|AC108136.1|lncRNA|chr8:122487386:122487466:-	0	-
#Deleted in new
chr8	122670384	122670500	ENSG00000253819.1|LINC01151|lncRNA|chr8:122670384:122670500:-	0	-
#Deleted in new
chr8	122671268	122671388	ENSG00000253819.1|LINC01151|lncRNA|chr8:122671268:122671388:-	0	-
#Deleted in new
chr8	122693372	122693481	ENSG00000253819.1|LINC01151|lncRNA|chr8:122693372:122693481:-	0	-
#Deleted in new
chr8	122700268	122700412	ENSG00000263443.1|AC100872.1|lncRNA|chr8:122700268:122700412:-	0	-
#Deleted in new
chr8	122807745	122807838	ENSG00000253372.5|AC016405.1|lncRNA|chr8:122807745:122807838:+	0	+
#Partially deleted in new
chr8	122809041	122809221	ENSG00000253372.5|AC016405.1|lncRNA|chr8:122809041:122809221:+	0	+
#Deleted in new
chr8	122815423	122815774	ENSG00000253372.5|AC016405.1|lncRNA|chr8:122815423:122815774:+	0	+
#Deleted in new
chr8	122816377	122816517	ENSG00000253372.5|AC016405.1|lncRNA|chr8:122816377:122816517:+	0	+
#Deleted in new
chr8	122977025	122977225	ENSG00000259631.1|AC104316.2|lncRNA|chr8:122977025:122977225:-	0	-
#Deleted in new
chr8	123025571	123025650	ENSG00000136986.9|DERL1|pc|chr8:123025571:123025650:-	0	-
#Deleted in new
chr8	123025722	123025772	ENSG00000136986.9|DERL1|pc|chr8:123025722:123025772:-	0	-
#Deleted in new
chr8	123074919	123075033	ENSG00000156787.16|TBC1D31|pc|chr8:123074919:123075033:+	0	+
#Partially deleted in new
chr8	123102246	123104201	ENSG00000156787.16|TBC1D31|pc|chr8:123102246:123104201:+	0	+
#Deleted in new
chr8	123178959	123179137	ENSG00000147689.16|FAM83A|pc|chr8:123178959:123179137:+	0	+
#Deleted in new
chr8	123179097	123179137	ENSG00000147689.16|FAM83A|pc|chr8:123179097:123179137:+	0	+
#Deleted in new
chr8	123179113	123179137	ENSG00000147689.16|FAM83A|pc|chr8:123179113:123179137:+	0	+
#Partially deleted in new
chr8	123180341	123180615	ENSG00000147689.16|FAM83A|pc|chr8:123180341:123180615:+	0	+
#Partially deleted in new
chr8	123199852	123199994	ENSG00000147689.16|FAM83A|pc|chr8:123199852:123199994:+	0	+
#Deleted in new
chr8	123201171	123201454	ENSG00000204949.8|FAM83A-AS1|lncRNA|chr8:123201171:123201454:-	0	-
#Deleted in new
chr8	123201171	123201982	ENSG00000204949.8|FAM83A-AS1|lncRNA|chr8:123201171:123201982:-	0	-
#Deleted in new
chr8	123201643	123201982	ENSG00000204949.8|FAM83A-AS1|lncRNA|chr8:123201643:123201982:-	0	-
#Deleted in new
chr8	123202207	123202743	ENSG00000204949.8|FAM83A-AS1|lncRNA|chr8:123202207:123202743:-	0	-
#Partially deleted in new
chr8	123239639	123239982	ENSG00000189376.11|C8orf76|pc|chr8:123239639:123239982:-	0	-
#Deleted in new
chr8	123257032	123257217	ENSG00000165156.14|ZHX1|pc|chr8:123257032:123257217:-	0	-
#Partially deleted in new
chr8	123369272	123369388	ENSG00000156802.12|ATAD2|pc|chr8:123369272:123369388:-	0	-
#Deleted in new
chr8	123448046	123448091	ENSG00000156795.6|WDYHV1|pc|chr8:123448046:123448091:+	0	+
#Deleted in new
chr8	123448046	123448224	ENSG00000156795.6|WDYHV1|pc|chr8:123448046:123448224:+	0	+
#Deleted in new
chr8	123467078	123467230	ENSG00000156795.6|WDYHV1|pc|chr8:123467078:123467230:+	0	+
#Partially deleted in new
chr8	123526995	123527254	ENSG00000156804.7|FBXO32|pc|chr8:123526995:123527254:-	0	-
#Deleted in new
chr8	123614224	123614275	ENSG00000253286.5|AC090193.1|lncRNA|chr8:123614224:123614275:+	0	+
#Deleted in new
chr8	12362018	12362562	ENSG00000227888.4|FAM66A|lncRNA|chr8:12362018:12362562:+	0	+
#Deleted in new
chr8	12362381	12362562	ENSG00000227888.4|FAM66A|lncRNA|chr8:12362381:12362562:+	0	+
#Deleted in new
chr8	12368238	12368302	ENSG00000227888.4|FAM66A|lncRNA|chr8:12368238:12368302:+	0	+
#Deleted in new
chr8	12368238	12368615	ENSG00000227888.4|FAM66A|lncRNA|chr8:12368238:12368615:+	0	+
#Deleted in new
chr8	12370760	12370828	ENSG00000227888.4|FAM66A|lncRNA|chr8:12370760:12370828:+	0	+
#Partially deleted in new
chr8	123786003	123786151	ENSG00000176853.15|FAM91A1|pc|chr8:123786003:123786151:+	0	+
#Deleted in new
chr8	123812055	123812177	ENSG00000176853.15|FAM91A1|pc|chr8:123812055:123812177:+	0	+
#Deleted in new
chr8	123851986	123852185	ENSG00000214814.7|FER1L6|pc|chr8:123851986:123852185:+	0	+
#Deleted in new
chr8	12387740	12387865	ENSG00000227888.4|FAM66A|lncRNA|chr8:12387740:12387865:+	0	+
#Deleted in new
chr8	12387957	12388019	ENSG00000227888.4|FAM66A|lncRNA|chr8:12387957:12388019:+	0	+
#Deleted in new
chr8	12388250	12388296	ENSG00000227888.4|FAM66A|lncRNA|chr8:12388250:12388296:+	0	+
#Deleted in new
chr8	123924758	123924876	ENSG00000254000.1|AC090753.1|lncRNA|chr8:123924758:123924876:-	0	-
#Deleted in new
chr8	123925720	123925933	ENSG00000254000.1|AC090753.1|lncRNA|chr8:123925720:123925933:-	0	-
#Deleted in new
chr8	124004189	124004232	ENSG00000181171.5|FER1L6-AS1|lncRNA|chr8:124004189:124004232:-	0	-
#Deleted in new
chr8	124014282	124014474	ENSG00000181171.5|FER1L6-AS1|lncRNA|chr8:124014282:124014474:-	0	-
#Deleted in new
chr8	124040625	124040782	ENSG00000181171.5|FER1L6-AS1|lncRNA|chr8:124040625:124040782:-	0	-
#Deleted in new
chr8	124047556	124047693	ENSG00000253868.3|FER1L6-AS2|lncRNA|chr8:124047556:124047693:-	0	-
#Deleted in new
chr8	12412826	12414373	ENSG00000270074.1|AC087203.3|lncRNA|chr8:12412826:12414373:+	0	+
#Deleted in new
chr8	124171427	124171522	ENSG00000253868.3|FER1L6-AS2|lncRNA|chr8:124171427:124171522:-	0	-
#Partially deleted in new
chr8	124192670	124193544	ENSG00000214803.3|AC090921.1|lncRNA|chr8:124192670:124193544:-	0	-
#Deleted in new
chr8	124208115	124208321	ENSG00000214803.3|AC090921.1|lncRNA|chr8:124208115:124208321:-	0	-
#Partially deleted in new
chr8	12425613	12425989	ENSG00000145002.12|FAM86B2|pc|chr8:12425613:12425989:-	0	-
#Deleted in new
chr8	124276113	124276236	ENSG00000253227.1|AC090192.2|lncRNA|chr8:124276113:124276236:+	0	+
#Deleted in new
chr8	124462026	124462150	ENSG00000183665.5|TRMT12|pc|chr8:124462026:124462150:+	0	+
#Deleted in new
chr8	124483344	124483407	ENSG00000170881.4|RNF139|pc|chr8:124483344:124483407:+	0	+
#Deleted in new
chr8	12467692	12471178	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12467692:12471178:-	0	-
#Deleted in new
chr8	1246788	1246858	ENSG00000254160.1|AC110288.1|lncRNA|chr8:1246788:1246858:-	0	-
#Deleted in new
chr8	1247005	1247103	ENSG00000254160.1|AC110288.1|lncRNA|chr8:1247005:1247103:-	0	-
#Deleted in new
chr8	12475416	12475537	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12475416:12475537:-	0	-
#Deleted in new
chr8	12476461	12477122	ENSG00000270154.1|AC130352.1|lncRNA|chr8:12476461:12477122:+	0	+
#Deleted in new
chr8	124811225	124811848	ENSG00000255491.2|AC100858.3|lncRNA|chr8:124811225:124811848:-	0	-
#Deleted in new
chr8	124812076	124812187	ENSG00000255491.2|AC100858.3|lncRNA|chr8:124812076:124812187:-	0	-
#Deleted in new
chr8	124840123	124840262	ENSG00000255491.2|AC100858.3|lncRNA|chr8:124840123:124840262:-	0	-
#Deleted in new
chr8	1248482	1248760	ENSG00000254160.1|AC110288.1|lncRNA|chr8:1248482:1248760:-	0	-
#Deleted in new
chr8	124849744	124849953	ENSG00000249816.6|LINC00964|lncRNA|chr8:124849744:124849953:+	0	+
#Deleted in new
chr8	124849744	124850217	ENSG00000249816.6|LINC00964|lncRNA|chr8:124849744:124850217:+	0	+
#Deleted in new
chr8	124945634	124945746	ENSG00000249816.6|LINC00964|lncRNA|chr8:124945634:124945746:+	0	+
#Deleted in new
chr8	124945637	124945746	ENSG00000249816.6|LINC00964|lncRNA|chr8:124945637:124945746:+	0	+
#Partially deleted in new
chr8	124945995	124946159	ENSG00000249816.6|LINC00964|lncRNA|chr8:124945995:124946159:+	0	+
#Partially deleted in new
chr8	124946054	124946159	ENSG00000249816.6|LINC00964|lncRNA|chr8:124946054:124946159:+	0	+
#Deleted in new
chr8	124947542	124947792	ENSG00000249816.6|LINC00964|lncRNA|chr8:124947542:124947792:+	0	+
#Deleted in new
chr8	124950815	124951094	ENSG00000249816.6|LINC00964|lncRNA|chr8:124950815:124951094:+	0	+
#Deleted in new
chr8	124950815	124951095	ENSG00000249816.6|LINC00964|lncRNA|chr8:124950815:124951095:+	0	+
#Deleted in new
chr8	124950815	124951096	ENSG00000249816.6|LINC00964|lncRNA|chr8:124950815:124951096:+	0	+
#Deleted in new
chr8	124950815	124951097	ENSG00000249816.6|LINC00964|lncRNA|chr8:124950815:124951097:+	0	+
#Deleted in new
chr8	124950815	124951177	ENSG00000249816.6|LINC00964|lncRNA|chr8:124950815:124951177:+	0	+
#Deleted in new
chr8	124975605	124975719	ENSG00000180938.5|ZNF572|pc|chr8:124975605:124975719:+	0	+
#Deleted in new
chr8	124996984	124997160	ENSG00000253513.1|AC009908.1|lncRNA|chr8:124996984:124997160:-	0	-
#Deleted in new
chr8	124997962	124998198	ENSG00000253513.1|AC009908.1|lncRNA|chr8:124997962:124998198:-	0	-
#Deleted in new
chr8	1250372	1250572	ENSG00000198010.12|DLGAP2|pc|chr8:1250372:1250572:+	0	+
#Deleted in new
chr8	125040683	125040779	ENSG00000253167.1|WASHC5-AS1|lncRNA|chr8:125040683:125040779:+	0	+
#Deleted in new
chr8	12505000	12509800	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12505000:12509800:-	0	-
#Deleted in new
chr8	125094467	125094533	ENSG00000156831.7|NSMCE2|pc|chr8:125094467:125094533:+	0	+
#Deleted in new
chr8	125124143	125124217	ENSG00000156831.7|NSMCE2|pc|chr8:125124143:125124217:+	0	+
#Deleted in new
chr8	125155999	125156098	ENSG00000156831.7|NSMCE2|pc|chr8:125155999:125156098:+	0	+
#Deleted in new
chr8	12518771	12518955	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12518771:12518955:-	0	-
#Partially deleted in new
chr8	125348195	125348881	ENSG00000254431.1|AC084083.1|lncRNA|chr8:125348195:125348881:-	0	-
#Deleted in new
chr8	12537078	12539065	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12537078:12539065:-	0	-
#Deleted in new
chr8	125473135	125473314	ENSG00000253111.1|AC091114.1|lncRNA|chr8:125473135:125473314:+	0	+
#Deleted in new
chr8	125522774	125523013	ENSG00000253111.1|AC091114.1|lncRNA|chr8:125522774:125523013:+	0	+
#Deleted in new
chr8	12580827	12581044	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12580827:12581044:-	0	-
#Deleted in new
chr8	12581932	12582063	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12581932:12582063:-	0	-
#Partially deleted in new
chr8	125941128	125946182	ENSG00000245164.6|LINC00861|lncRNA|chr8:125941128:125946182:-	0	-
#Deleted in new
chr8	125945932	125946182	ENSG00000245164.6|LINC00861|lncRNA|chr8:125945932:125946182:-	0	-
#Deleted in new
chr8	12594969	12595296	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12594969:12595296:-	0	-
#Deleted in new
chr8	12594984	12595296	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12594984:12595296:-	0	-
#Deleted in new
chr8	125950913	125951150	ENSG00000245164.6|LINC00861|lncRNA|chr8:125950913:125951150:-	0	-
#Deleted in new
chr8	125950913	125951189	ENSG00000245164.6|LINC00861|lncRNA|chr8:125950913:125951189:-	0	-
#Deleted in new
chr8	125951185	125951249	ENSG00000245164.6|LINC00861|lncRNA|chr8:125951185:125951249:-	0	-
#Deleted in new
chr8	125998993	125999153	ENSG00000254227.1|AC024681.2|lncRNA|chr8:125998993:125999153:-	0	-
#Deleted in new
chr8	126000957	126001001	ENSG00000254227.1|AC024681.2|lncRNA|chr8:126000957:126001001:-	0	-
#Deleted in new
chr8	12604930	12605107	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12604930:12605107:-	0	-
#Deleted in new
chr8	12607290	12607526	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12607290:12607526:-	0	-
#Deleted in new
chr8	12607290	12607660	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12607290:12607660:-	0	-
#Deleted in new
chr8	12607290	12607664	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12607290:12607664:-	0	-
#Deleted in new
chr8	12607922	12607990	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12607922:12607990:-	0	-
#Deleted in new
chr8	12626391	12626570	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12626391:12626570:-	0	-
#Deleted in new
chr8	126325494	126325557	ENSG00000244791.2|AC087667.1|lncRNA|chr8:126325494:126325557:+	0	+
#Deleted in new
chr8	126487546	126487630	ENSG00000253427.1|AC084116.2|lncRNA|chr8:126487546:126487630:+	0	+
#Deleted in new
chr8	126522200	126522351	ENSG00000253530.1|AC084116.3|lncRNA|chr8:126522200:126522351:+	0	+
#Deleted in new
chr8	12665277	12665514	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12665277:12665514:-	0	-
#Deleted in new
chr8	12665277	12665588	ENSG00000283674.2|AC068587.6|lncRNA|chr8:12665277:12665588:-	0	-
#Deleted in new
chr8	126666544	126666718	ENSG00000254286.5|AC083923.2|lncRNA|chr8:126666544:126666718:+	0	+
#Deleted in new
chr8	126676351	126676413	ENSG00000254286.5|AC083923.2|lncRNA|chr8:126676351:126676413:+	0	+
#Deleted in new
chr8	126707182	126707240	ENSG00000254286.5|AC083923.2|lncRNA|chr8:126707182:126707240:+	0	+
#Deleted in new
chr8	126708917	126709147	ENSG00000254286.5|AC083923.2|lncRNA|chr8:126708917:126709147:+	0	+
#Deleted in new
chr8	126713285	126713415	ENSG00000254286.5|AC083923.2|lncRNA|chr8:126713285:126713415:+	0	+
#Deleted in new
chr8	126790567	126790637	ENSG00000253573.1|AC024382.1|lncRNA|chr8:126790567:126790637:-	0	-
#Deleted in new
chr8	127006554	127006618	ENSG00000253438.2|PCAT1|lncRNA|chr8:127006554:127006618:+	0	+
#Deleted in new
chr8	127019643	127021014	ENSG00000253438.2|PCAT1|lncRNA|chr8:127019643:127021014:+	0	+
#Deleted in new
chr8	127072693	127072918	ENSG00000254166.2|CASC19|lncRNA|chr8:127072693:127072918:-	0	-
#Deleted in new
chr8	127076825	127076910	ENSG00000254166.2|CASC19|lncRNA|chr8:127076825:127076910:-	0	-
#Deleted in new
chr8	127078438	127079133	ENSG00000254166.2|CASC19|lncRNA|chr8:127078438:127079133:-	0	-
#Deleted in new
chr8	127078894	127079133	ENSG00000254166.2|CASC19|lncRNA|chr8:127078894:127079133:-	0	-
#Deleted in new
chr8	127078969	127079133	ENSG00000254166.2|CASC19|lncRNA|chr8:127078969:127079133:-	0	-
#Deleted in new
chr8	127141473	127141571	ENSG00000254166.2|CASC19|lncRNA|chr8:127141473:127141571:-	0	-
#Deleted in new
chr8	127143762	127143919	ENSG00000254166.2|CASC19|lncRNA|chr8:127143762:127143919:-	0	-
#Deleted in new
chr8	127143762	127144126	ENSG00000254166.2|CASC19|lncRNA|chr8:127143762:127144126:-	0	-
#Deleted in new
chr8	127143762	127144417	ENSG00000254166.2|CASC19|lncRNA|chr8:127143762:127144417:-	0	-
#Deleted in new
chr8	127147274	127148918	ENSG00000254166.2|CASC19|lncRNA|chr8:127147274:127148918:-	0	-
#Deleted in new
chr8	127148796	127148918	ENSG00000254166.2|CASC19|lncRNA|chr8:127148796:127148918:-	0	-
#Deleted in new
chr8	127149615	127149672	ENSG00000254166.2|CASC19|lncRNA|chr8:127149615:127149672:-	0	-
#Partially deleted in new
chr8	127168421	127169117	ENSG00000254166.2|CASC19|lncRNA|chr8:127168421:127169117:-	0	-
#Partially deleted in new
chr8	127168653	127169117	ENSG00000254166.2|CASC19|lncRNA|chr8:127168653:127169117:-	0	-
#Partially deleted in new
chr8	127168673	127169117	ENSG00000254166.2|CASC19|lncRNA|chr8:127168673:127169117:-	0	-
#Deleted in new
chr8	127168675	127169117	ENSG00000254166.2|CASC19|lncRNA|chr8:127168675:127169117:-	0	-
#Deleted in new
chr8	127168698	127169117	ENSG00000254166.2|CASC19|lncRNA|chr8:127168698:127169117:-	0	-
#Deleted in new
chr8	127168707	127169117	ENSG00000254166.2|CASC19|lncRNA|chr8:127168707:127169117:-	0	-
#Deleted in new
chr8	127168817	127169117	ENSG00000254166.2|CASC19|lncRNA|chr8:127168817:127169117:-	0	-
#Deleted in new
chr8	127168830	127169117	ENSG00000254166.2|CASC19|lncRNA|chr8:127168830:127169117:-	0	-
#Deleted in new
chr8	127168841	127169117	ENSG00000254166.2|CASC19|lncRNA|chr8:127168841:127169117:-	0	-
#Deleted in new
chr8	127168897	127169117	ENSG00000254166.2|CASC19|lncRNA|chr8:127168897:127169117:-	0	-
#Deleted in new
chr8	127180361	127180487	ENSG00000254166.2|CASC19|lncRNA|chr8:127180361:127180487:-	0	-
#Deleted in new
chr8	127186003	127186233	ENSG00000254166.2|CASC19|lncRNA|chr8:127186003:127186233:-	0	-
#Deleted in new
chr8	127186162	127186233	ENSG00000254166.2|CASC19|lncRNA|chr8:127186162:127186233:-	0	-
#Deleted in new
chr8	127187780	127187884	ENSG00000254166.2|CASC19|lncRNA|chr8:127187780:127187884:-	0	-
#Deleted in new
chr8	127187784	127187884	ENSG00000254166.2|CASC19|lncRNA|chr8:127187784:127187884:-	0	-
#Deleted in new
chr8	127187796	127187884	ENSG00000254166.2|CASC19|lncRNA|chr8:127187796:127187884:-	0	-
#Deleted in new
chr8	127191661	127191847	ENSG00000254166.2|CASC19|lncRNA|chr8:127191661:127191847:-	0	-
#Deleted in new
chr8	127191665	127191847	ENSG00000254166.2|CASC19|lncRNA|chr8:127191665:127191847:-	0	-
#Deleted in new
chr8	127203162	127203166	ENSG00000254166.2|CASC19|lncRNA|chr8:127203162:127203166:-	0	-
#Deleted in new
chr8	127203162	127203175	ENSG00000254166.2|CASC19|lncRNA|chr8:127203162:127203175:-	0	-
#Deleted in new
chr8	127203162	127203198	ENSG00000254166.2|CASC19|lncRNA|chr8:127203162:127203198:-	0	-
#Deleted in new
chr8	127203162	127203220	ENSG00000254166.2|CASC19|lncRNA|chr8:127203162:127203220:-	0	-
#Deleted in new
chr8	127203162	127203227	ENSG00000254166.2|CASC19|lncRNA|chr8:127203162:127203227:-	0	-
#Partially deleted in new
chr8	127204411	127209717	ENSG00000254166.2|CASC19|lncRNA|chr8:127204411:127209717:-	0	-
#Deleted in new
chr8	127205346	127205395	ENSG00000254166.2|CASC19|lncRNA|chr8:127205346:127205395:-	0	-
#Deleted in new
chr8	127205346	127205432	ENSG00000254166.2|CASC19|lncRNA|chr8:127205346:127205432:-	0	-
#Deleted in new
chr8	127205346	127205445	ENSG00000254166.2|CASC19|lncRNA|chr8:127205346:127205445:-	0	-
#Deleted in new
chr8	127205346	127205467	ENSG00000254166.2|CASC19|lncRNA|chr8:127205346:127205467:-	0	-
#Deleted in new
chr8	127205346	127205511	ENSG00000254166.2|CASC19|lncRNA|chr8:127205346:127205511:-	0	-
#Deleted in new
chr8	127205346	127205522	ENSG00000254166.2|CASC19|lncRNA|chr8:127205346:127205522:-	0	-
#Deleted in new
chr8	127205346	127205569	ENSG00000254166.2|CASC19|lncRNA|chr8:127205346:127205569:-	0	-
#Deleted in new
chr8	127205346	127205596	ENSG00000254166.2|CASC19|lncRNA|chr8:127205346:127205596:-	0	-
#Deleted in new
chr8	127205346	127205612	ENSG00000254166.2|CASC19|lncRNA|chr8:127205346:127205612:-	0	-
#Deleted in new
chr8	127205346	127205716	ENSG00000254166.2|CASC19|lncRNA|chr8:127205346:127205716:-	0	-
#Partially deleted in new
chr8	127205346	127206123	ENSG00000254166.2|CASC19|lncRNA|chr8:127205346:127206123:-	0	-
#Deleted in new
chr8	127208145	127208202	ENSG00000254166.2|CASC19|lncRNA|chr8:127208145:127208202:-	0	-
#Deleted in new
chr8	127208145	127208327	ENSG00000254166.2|CASC19|lncRNA|chr8:127208145:127208327:-	0	-
#Deleted in new
chr8	127208605	127208668	ENSG00000254166.2|CASC19|lncRNA|chr8:127208605:127208668:-	0	-
#Deleted in new
chr8	127208605	127208682	ENSG00000254166.2|CASC19|lncRNA|chr8:127208605:127208682:-	0	-
#Partially deleted in new
chr8	127208856	127209635	ENSG00000254166.2|CASC19|lncRNA|chr8:127208856:127209635:-	0	-
#Partially deleted in new
chr8	127208856	127209717	ENSG00000254166.2|CASC19|lncRNA|chr8:127208856:127209717:-	0	-
#Deleted in new
chr8	127224399	127224436	ENSG00000254166.2|CASC19|lncRNA|chr8:127224399:127224436:-	0	-
#Deleted in new
chr8	127224399	127224476	ENSG00000254166.2|CASC19|lncRNA|chr8:127224399:127224476:-	0	-
#Deleted in new
chr8	127224534	127224684	ENSG00000254166.2|CASC19|lncRNA|chr8:127224534:127224684:-	0	-
#Deleted in new
chr8	127227398	127227541	ENSG00000254166.2|CASC19|lncRNA|chr8:127227398:127227541:-	0	-
#Deleted in new
chr8	127227518	127227541	ENSG00000254166.2|CASC19|lncRNA|chr8:127227518:127227541:-	0	-
#Deleted in new
chr8	127323014	127323154	ENSG00000246228.6|CASC8|lncRNA|chr8:127323014:127323154:-	0	-
#Partially deleted in new
chr8	12737271	12737360	ENSG00000154359.12|LONRF1|pc|chr8:12737271:12737360:-	0	-
#Split in new
chr8	127415442	127420069	ENSG00000212993.4|POU5F1B|pc|chr8:127415442:127420069:+	0	+
#Deleted in new
chr8	127443349	127443720	ENSG00000246228.6|CASC8|lncRNA|chr8:127443349:127443720:-	0	-
#Deleted in new
chr8	127479703	127479806	ENSG00000246228.6|CASC8|lncRNA|chr8:127479703:127479806:-	0	-
#Deleted in new
chr8	127700607	127700839	ENSG00000249375.7|CASC11|lncRNA|chr8:127700607:127700839:-	0	-
#Deleted in new
chr8	127703049	127703243	ENSG00000249375.7|CASC11|lncRNA|chr8:127703049:127703243:-	0	-
#Deleted in new
chr8	127715946	127716168	ENSG00000249375.7|CASC11|lncRNA|chr8:127715946:127716168:-	0	-
#Deleted in new
chr8	12778253	12778356	ENSG00000254813.5|AC123777.1|lncRNA|chr8:12778253:12778356:-	0	-
#Deleted in new
chr8	127803149	127803559	ENSG00000249859.9|PVT1|lncRNA|chr8:127803149:127803559:+	0	+
#Deleted in new
chr8	127851933	127852347	ENSG00000249859.9|PVT1|lncRNA|chr8:127851933:127852347:+	0	+
#Deleted in new
chr8	127932464	127932695	ENSG00000249859.9|PVT1|lncRNA|chr8:127932464:127932695:+	0	+
#Partially deleted in new
chr8	127939507	127939609	ENSG00000249859.9|PVT1|lncRNA|chr8:127939507:127939609:+	0	+
#Partially deleted in new
chr8	127939507	127939676	ENSG00000249859.9|PVT1|lncRNA|chr8:127939507:127939676:+	0	+
#Partially deleted in new
chr8	127939507	127940454	ENSG00000249859.9|PVT1|lncRNA|chr8:127939507:127940454:+	0	+
#Deleted in new
chr8	12794242	12794417	ENSG00000255494.1|LINC00681|lncRNA|chr8:12794242:12794417:+	0	+
#Partially deleted in new
chr8	127946558	127948723	ENSG00000280055.1|TMEM75|lncRNA|chr8:127946558:127948723:-	0	-
#Partially deleted in new
chr8	127946879	127948345	ENSG00000280055.1|TMEM75|lncRNA|chr8:127946879:127948345:-	0	-
#Deleted in new
chr8	127983903	127984204	ENSG00000249859.9|PVT1|lncRNA|chr8:127983903:127984204:+	0	+
#Deleted in new
chr8	127996560	127996598	ENSG00000249859.9|PVT1|lncRNA|chr8:127996560:127996598:+	0	+
#Deleted in new
chr8	127996560	127996650	ENSG00000249859.9|PVT1|lncRNA|chr8:127996560:127996650:+	0	+
#Deleted in new
chr8	127998199	127998359	ENSG00000249859.9|PVT1|lncRNA|chr8:127998199:127998359:+	0	+
#Deleted in new
chr8	128100979	128101097	ENSG00000249859.9|PVT1|lncRNA|chr8:128100979:128101097:+	0	+
#Deleted in new
chr8	128100979	128101253	ENSG00000249859.9|PVT1|lncRNA|chr8:128100979:128101253:+	0	+
#Deleted in new
chr8	12811379	12811478	ENSG00000254813.5|AC123777.1|lncRNA|chr8:12811379:12811478:-	0	-
#Deleted in new
chr8	128405268	128406633	ENSG00000254275.6|LINC00824|lncRNA|chr8:128405268:128406633:-	0	-
#Deleted in new
chr8	128406260	128406633	ENSG00000254275.6|LINC00824|lncRNA|chr8:128406260:128406633:-	0	-
#Deleted in new
chr8	128406775	128406846	ENSG00000254275.6|LINC00824|lncRNA|chr8:128406775:128406846:-	0	-
#Deleted in new
chr8	128420711	128420823	ENSG00000254275.6|LINC00824|lncRNA|chr8:128420711:128420823:-	0	-
#Deleted in new
chr8	128904772	128905133	ENSG00000281657.2|LINC00976|lncRNA|chr8:128904772:128905133:-	0	-
#Deleted in new
chr8	128916801	128916916	ENSG00000281657.2|LINC00976|lncRNA|chr8:128916801:128916916:-	0	-
#Deleted in new
chr8	128918878	128919002	ENSG00000281657.2|LINC00976|lncRNA|chr8:128918878:128919002:-	0	-
#Deleted in new
chr8	128920243	128920348	ENSG00000281657.2|LINC00976|lncRNA|chr8:128920243:128920348:-	0	-
#Deleted in new
chr8	128920822	128920883	ENSG00000281657.2|LINC00976|lncRNA|chr8:128920822:128920883:-	0	-
#Deleted in new
chr8	128952876	128953217	ENSG00000281657.2|LINC00976|lncRNA|chr8:128952876:128953217:-	0	-
#Deleted in new
chr8	128954759	128955442	ENSG00000281657.2|LINC00976|lncRNA|chr8:128954759:128955442:-	0	-
#Deleted in new
chr8	128955570	128955663	ENSG00000281657.2|LINC00976|lncRNA|chr8:128955570:128955663:-	0	-
#Deleted in new
chr8	128965942	128966001	ENSG00000281657.2|LINC00976|lncRNA|chr8:128965942:128966001:-	0	-
#Deleted in new
chr8	129223220	129223369	ENSG00000250400.3|LINC00977|lncRNA|chr8:129223220:129223369:-	0	-
#Deleted in new
chr8	129399513	129399684	ENSG00000229140.8|CCDC26|lncRNA|chr8:129399513:129399684:-	0	-
#Deleted in new
chr8	12945641	12945661	ENSG00000250305.8|KIAA1456|pc|chr8:12945641:12945661:+	0	+
#Deleted in new
chr8	12945673	12945966	ENSG00000250305.8|KIAA1456|pc|chr8:12945673:12945966:+	0	+
#Deleted in new
chr8	12945676	12945966	ENSG00000250305.8|KIAA1456|pc|chr8:12945676:12945966:+	0	+
#Deleted in new
chr8	12945856	12945966	ENSG00000250305.8|KIAA1456|pc|chr8:12945856:12945966:+	0	+
#Deleted in new
chr8	129574881	129574991	ENSG00000229140.8|CCDC26|lncRNA|chr8:129574881:129574991:-	0	-
#Deleted in new
chr8	129574881	129575016	ENSG00000229140.8|CCDC26|lncRNA|chr8:129574881:129575016:-	0	-
#Deleted in new
chr8	1296033	1296203	ENSG00000275427.1|AF067845.2|lncRNA|chr8:1296033:1296203:-	0	-
#Deleted in new
chr8	12969996	12970150	ENSG00000250305.8|KIAA1456|pc|chr8:12969996:12970150:+	0	+
#Deleted in new
chr8	129752105	129752147	ENSG00000147697.8|GSDMC|pc|chr8:129752105:129752147:-	0	-
#Deleted in new
chr8	129752697	129752757	ENSG00000147697.8|GSDMC|pc|chr8:129752697:129752757:-	0	-
#Deleted in new
chr8	129752697	129752820	ENSG00000147697.8|GSDMC|pc|chr8:129752697:129752820:-	0	-
#Deleted in new
chr8	129752697	129752886	ENSG00000147697.8|GSDMC|pc|chr8:129752697:129752886:-	0	-
#Deleted in new
chr8	129832300	129832429	ENSG00000254317.1|AC022973.4|lncRNA|chr8:129832300:129832429:+	0	+
#Deleted in new
chr8	129890464	129890655	ENSG00000254263.1|AC022973.3|lncRNA|chr8:129890464:129890655:+	0	+
#Deleted in new
chr8	129894486	129894564	ENSG00000153310.19|FAM49B|pc|chr8:129894486:129894564:-	0	-
#Partially deleted in new
chr8	129896671	129896854	ENSG00000153310.19|FAM49B|pc|chr8:129896671:129896854:-	0	-
#Partially deleted in new
chr8	129896748	129896854	ENSG00000153310.19|FAM49B|pc|chr8:129896748:129896854:-	0	-
#Deleted in new
chr8	129904498	129904585	ENSG00000153310.19|FAM49B|pc|chr8:129904498:129904585:-	0	-
#Deleted in new
chr8	129948965	129949067	ENSG00000153310.19|FAM49B|pc|chr8:129948965:129949067:-	0	-
#Deleted in new
chr8	129949198	129949394	ENSG00000253720.1|AC022973.2|lncRNA|chr8:129949198:129949394:+	0	+
#Partially deleted in new
chr8	1299924	1302607	ENSG00000275427.1|AF067845.2|lncRNA|chr8:1299924:1302607:-	0	-
#Deleted in new
chr8	130208629	130208746	ENSG00000153317.14|ASAP1|pc|chr8:130208629:130208746:-	0	-
#Deleted in new
chr8	130246965	130247042	ENSG00000153317.14|ASAP1|pc|chr8:130246965:130247042:-	0	-
#Deleted in new
chr8	13031113	13031503	ENSG00000250305.8|KIAA1456|pc|chr8:13031113:13031503:+	0	+
#Deleted in new
chr8	130427733	130427802	ENSG00000153317.14|ASAP1|pc|chr8:130427733:130427802:-	0	-
#Partially deleted in new
chr8	130598846	130599071	ENSG00000253656.1|AC090987.1|lncRNA|chr8:130598846:130599071:-	0	-
#Deleted in new
chr8	130655558	130655712	ENSG00000253656.1|AC090987.1|lncRNA|chr8:130655558:130655712:-	0	-
#Deleted in new
chr8	130935408	130935538	ENSG00000253992.1|AC103726.2|lncRNA|chr8:130935408:130935538:+	0	+
#Deleted in new
chr8	130990842	130990865	ENSG00000155897.9|ADCY8|pc|chr8:130990842:130990865:-	0	-
#Deleted in new
chr8	131130387	131130688	ENSG00000253407.1|AC087341.1|lncRNA|chr8:131130387:131130688:-	0	-
#Deleted in new
chr8	131308544	131308671	ENSG00000253507.5|AC104257.1|lncRNA|chr8:131308544:131308671:+	0	+
#Deleted in new
chr8	131310471	131310712	ENSG00000253507.5|AC104257.1|lncRNA|chr8:131310471:131310712:+	0	+
#Deleted in new
chr8	131310552	131310712	ENSG00000253507.5|AC104257.1|lncRNA|chr8:131310552:131310712:+	0	+
#Deleted in new
chr8	131312555	131312729	ENSG00000253507.5|AC104257.1|lncRNA|chr8:131312555:131312729:+	0	+
#Deleted in new
chr8	131312555	131312748	ENSG00000253507.5|AC104257.1|lncRNA|chr8:131312555:131312748:+	0	+
#Deleted in new
chr8	131315759	131315883	ENSG00000253507.5|AC104257.1|lncRNA|chr8:131315759:131315883:+	0	+
#Deleted in new
chr8	131939880	131940219	ENSG00000132294.14|EFR3A|pc|chr8:131939880:131940219:+	0	+
#Deleted in new
chr8	131939900	131939944	ENSG00000132294.14|EFR3A|pc|chr8:131939900:131939944:+	0	+
#Deleted in new
chr8	132085404	132085655	ENSG00000258417.3|AC100868.1|pc|chr8:132085404:132085655:-	0	-
#Deleted in new
chr8	132186563	132186569	ENSG00000184156.16|KCNQ3|pc|chr8:132186563:132186569:-	0	-
#Deleted in new
chr8	132187196	132187213	ENSG00000184156.16|KCNQ3|pc|chr8:132187196:132187213:-	0	-
#Deleted in new
chr8	132447200	132447262	ENSG00000184156.16|KCNQ3|pc|chr8:132447200:132447262:-	0	-
#Deleted in new
chr8	132578407	132578516	ENSG00000129295.8|LRRC6|pc|chr8:132578407:132578516:-	0	-
#Partially deleted in new
chr8	132643379	132643686	ENSG00000129295.8|LRRC6|pc|chr8:132643379:132643686:-	0	-
#Deleted in new
chr8	132643623	132643686	ENSG00000129295.8|LRRC6|pc|chr8:132643623:132643686:-	0	-
#Deleted in new
chr8	132702145	132702239	ENSG00000165071.14|TMEM71|pc|chr8:132702145:132702239:-	0	-
#Partially deleted in new
chr8	13276694	13276784	ENSG00000164741.14|DLC1|pc|chr8:13276694:13276784:-	0	-
#Partially deleted in new
chr8	13276694	13276873	ENSG00000164741.14|DLC1|pc|chr8:13276694:13276873:-	0	-
#Partially deleted in new
chr8	132788803	132788999	ENSG00000129292.20|PHF20L1|pc|chr8:132788803:132788999:+	0	+
#Deleted in new
chr8	132826178	132826903	ENSG00000270137.1|AF230666.2|lncRNA|chr8:132826178:132826903:+	0	+
#Deleted in new
chr8	132964606	132964933	ENSG00000042832.11|TG|pc|chr8:132964606:132964933:+	0	+
#Deleted in new
chr8	132994715	132994804	ENSG00000042832.11|TG|pc|chr8:132994715:132994804:+	0	+
#Deleted in new
chr8	133001772	133002285	ENSG00000042832.11|TG|pc|chr8:133001772:133002285:+	0	+
#Deleted in new
chr8	133059061	133059192	ENSG00000155926.13|SLA|pc|chr8:133059061:133059192:-	0	-
#Deleted in new
chr8	133076655	133076755	ENSG00000155926.13|SLA|pc|chr8:133076655:133076755:-	0	-
#Partially deleted in new
chr8	133089983	133090115	ENSG00000155926.13|SLA|pc|chr8:133089983:133090115:-	0	-
#Deleted in new
chr8	133259402	133259446	ENSG00000104419.14|NDRG1|pc|chr8:133259402:133259446:-	0	-
#Deleted in new
chr8	133288259	133288431	ENSG00000104419.14|NDRG1|pc|chr8:133288259:133288431:-	0	-
#Deleted in new
chr8	133298377	133298458	ENSG00000104419.14|NDRG1|pc|chr8:133298377:133298458:-	0	-
#Deleted in new
chr8	133301987	133302022	ENSG00000104419.14|NDRG1|pc|chr8:133301987:133302022:-	0	-
#Deleted in new
chr8	13338573	13338753	ENSG00000253932.1|AC019270.1|lncRNA|chr8:13338573:13338753:+	0	+
#Deleted in new
chr8	133488081	133488439	ENSG00000008513.14|ST3GAL1|pc|chr8:133488081:133488439:-	0	-
#Deleted in new
chr8	133489537	133489633	ENSG00000008513.14|ST3GAL1|pc|chr8:133489537:133489633:-	0	-
#Deleted in new
chr8	133489537	133489640	ENSG00000008513.14|ST3GAL1|pc|chr8:133489537:133489640:-	0	-
#Deleted in new
chr8	133489537	133489700	ENSG00000008513.14|ST3GAL1|pc|chr8:133489537:133489700:-	0	-
#Deleted in new
chr8	133539636	133539729	ENSG00000008513.14|ST3GAL1|pc|chr8:133539636:133539729:-	0	-
#Partially deleted in new
chr8	133544057	133544089	ENSG00000008513.14|ST3GAL1|pc|chr8:133544057:133544089:-	0	-
#Deleted in new
chr8	133771408	133771562	ENSG00000253561.1|AC133634.1|lncRNA|chr8:133771408:133771562:+	0	+
#Partially deleted in new
chr8	133777298	133777352	ENSG00000253165.1|AC090821.1|lncRNA|chr8:133777298:133777352:-	0	-
#Deleted in new
chr8	133808681	133808784	ENSG00000253561.1|AC133634.1|lncRNA|chr8:133808681:133808784:+	0	+
#Deleted in new
chr8	134594806	134594885	ENSG00000066827.15|ZFAT|pc|chr8:134594806:134594885:-	0	-
#Deleted in new
chr8	134674729	134674888	ENSG00000066827.15|ZFAT|pc|chr8:134674729:134674888:-	0	-
#Deleted in new
chr8	134696430	134696554	ENSG00000066827.15|ZFAT|pc|chr8:134696430:134696554:-	0	-
#Deleted in new
chr8	134696430	134696556	ENSG00000066827.15|ZFAT|pc|chr8:134696430:134696556:-	0	-
#Deleted in new
chr8	134696430	134696558	ENSG00000066827.15|ZFAT|pc|chr8:134696430:134696558:-	0	-
#Deleted in new
chr8	134783693	134785879	ENSG00000279518.1|AC083843.3|lncRNA|chr8:134783693:134785879:-	0	-
#Deleted in new
chr8	134842224	134842318	ENSG00000253433.1|NCRNA00250|lncRNA|chr8:134842224:134842318:+	0	+
#Deleted in new
chr8	134842453	134842637	ENSG00000253433.1|NCRNA00250|lncRNA|chr8:134842453:134842637:+	0	+
#Deleted in new
chr8	134881183	134881280	ENSG00000251218.1|AC103764.1|lncRNA|chr8:134881183:134881280:+	0	+
#Deleted in new
chr8	135593330	135593392	ENSG00000131773.13|KHDRBS3|pc|chr8:135593330:135593392:+	0	+
#Deleted in new
chr8	136165221	136165343	ENSG00000253248.5|AC079098.1|lncRNA|chr8:136165221:136165343:+	0	+
#Deleted in new
chr8	136165933	136165995	ENSG00000253248.5|AC079098.1|lncRNA|chr8:136165933:136165995:+	0	+
#Deleted in new
chr8	136165933	136166122	ENSG00000253248.5|AC079098.1|lncRNA|chr8:136165933:136166122:+	0	+
#Deleted in new
chr8	136489447	136489502	ENSG00000253839.1|AC013546.1|lncRNA|chr8:136489447:136489502:+	0	+
#Deleted in new
chr8	136515965	136516300	ENSG00000253839.1|AC013546.1|lncRNA|chr8:136515965:136516300:+	0	+
#Deleted in new
chr8	136519147	136519239	ENSG00000253839.1|AC013546.1|lncRNA|chr8:136519147:136519239:+	0	+
#Deleted in new
chr8	136529794	136529876	ENSG00000253839.1|AC013546.1|lncRNA|chr8:136529794:136529876:+	0	+
#Deleted in new
chr8	136530797	136531006	ENSG00000254101.5|LINC02055|lncRNA|chr8:136530797:136531006:+	0	+
#Deleted in new
chr8	136530808	136531006	ENSG00000254101.5|LINC02055|lncRNA|chr8:136530808:136531006:+	0	+
#Deleted in new
chr8	136780852	136781178	ENSG00000254101.5|LINC02055|lncRNA|chr8:136780852:136781178:+	0	+
#Deleted in new
chr8	136797272	136797370	ENSG00000254101.5|LINC02055|lncRNA|chr8:136797272:136797370:+	0	+
#Deleted in new
chr8	136797273	136797370	ENSG00000254101.5|LINC02055|lncRNA|chr8:136797273:136797370:+	0	+
#Deleted in new
chr8	136798031	136798234	ENSG00000254101.5|LINC02055|lncRNA|chr8:136798031:136798234:+	0	+
#Deleted in new
chr8	136815130	136815688	ENSG00000254101.5|LINC02055|lncRNA|chr8:136815130:136815688:+	0	+
#Deleted in new
chr8	136888279	136888350	ENSG00000254101.5|LINC02055|lncRNA|chr8:136888279:136888350:+	0	+
#Deleted in new
chr8	136896984	136897078	ENSG00000254101.5|LINC02055|lncRNA|chr8:136896984:136897078:+	0	+
#Deleted in new
chr8	136897432	136897601	ENSG00000254101.5|LINC02055|lncRNA|chr8:136897432:136897601:+	0	+
#Deleted in new
chr8	136961739	136961851	ENSG00000254101.5|LINC02055|lncRNA|chr8:136961739:136961851:+	0	+
#Deleted in new
chr8	136984807	136984935	ENSG00000254101.5|LINC02055|lncRNA|chr8:136984807:136984935:+	0	+
#Partially deleted in new
chr8	137809443	137812934	ENSG00000253288.1|AC046195.1|lncRNA|chr8:137809443:137812934:-	0	-
#Partially deleted in new
chr8	137837719	137837885	ENSG00000253288.1|AC046195.1|lncRNA|chr8:137837719:137837885:-	0	-
#Deleted in new
chr8	137857056	137857119	ENSG00000254361.1|AC046195.2|lncRNA|chr8:137857056:137857119:+	0	+
#Deleted in new
chr8	137928680	137929044	ENSG00000254361.1|AC046195.2|lncRNA|chr8:137928680:137929044:+	0	+
#Deleted in new
chr8	1379598	1379710	ENSG00000281961.1|AF067845.4|lncRNA|chr8:1379598:1379710:+	0	+
#Deleted in new
chr8	1380172	1380307	ENSG00000281961.1|AF067845.4|lncRNA|chr8:1380172:1380307:+	0	+
#Deleted in new
chr8	138063267	138063523	ENSG00000253988.1|AC079015.1|lncRNA|chr8:138063267:138063523:+	0	+
#Deleted in new
chr8	138072900	138073240	ENSG00000253988.1|AC079015.1|lncRNA|chr8:138072900:138073240:+	0	+
#Deleted in new
chr8	1381065	1381394	ENSG00000282160.1|AF067845.5|lncRNA|chr8:1381065:1381394:+	0	+
#Deleted in new
chr8	138144294	138144383	ENSG00000147724.11|FAM135B|pc|chr8:138144294:138144383:-	0	-
#Deleted in new
chr8	138367332	138367410	ENSG00000147724.11|FAM135B|pc|chr8:138367332:138367410:-	0	-
#Deleted in new
chr8	138450496	138450811	ENSG00000147724.11|FAM135B|pc|chr8:138450496:138450811:-	0	-
#Deleted in new
chr8	138477316	138477404	ENSG00000147724.11|FAM135B|pc|chr8:138477316:138477404:-	0	-
#Deleted in new
chr8	138477316	138477421	ENSG00000147724.11|FAM135B|pc|chr8:138477316:138477421:-	0	-
#Deleted in new
chr8	138477316	138477428	ENSG00000147724.11|FAM135B|pc|chr8:138477316:138477428:-	0	-
#Deleted in new
chr8	138477316	138477440	ENSG00000147724.11|FAM135B|pc|chr8:138477316:138477440:-	0	-
#Deleted in new
chr8	138477316	138477456	ENSG00000147724.11|FAM135B|pc|chr8:138477316:138477456:-	0	-
#Deleted in new
chr8	139096304	139096550	ENSG00000253432.1|AC027541.1|lncRNA|chr8:139096304:139096550:-	0	-
#Deleted in new
chr8	139099369	139099462	ENSG00000253432.1|AC027541.1|lncRNA|chr8:139099369:139099462:-	0	-
#Deleted in new
chr8	139102684	139102830	ENSG00000253432.1|AC027541.1|lncRNA|chr8:139102684:139102830:-	0	-
#Deleted in new
chr8	139114192	139114516	ENSG00000253783.1|AC100807.1|lncRNA|chr8:139114192:139114516:-	0	-
#Deleted in new
chr8	139121371	139121522	ENSG00000253783.1|AC100807.1|lncRNA|chr8:139121371:139121522:-	0	-
#Deleted in new
chr8	139127876	139127953	ENSG00000253783.1|AC100807.1|lncRNA|chr8:139127876:139127953:-	0	-
#Deleted in new
chr8	139460061	139460967	ENSG00000254258.1|AC087354.1|lncRNA|chr8:139460061:139460967:-	0	-
#Deleted in new
chr8	139462885	139463016	ENSG00000254258.1|AC087354.1|lncRNA|chr8:139462885:139463016:-	0	-
#Deleted in new
chr8	139600837	139601601	ENSG00000169427.6|KCNK9|pc|chr8:139600837:139601601:-	0	-
#Deleted in new
chr8	139600838	139601601	ENSG00000169427.6|KCNK9|pc|chr8:139600838:139601601:-	0	-
#Deleted in new
chr8	139601077	139601601	ENSG00000169427.6|KCNK9|pc|chr8:139601077:139601601:-	0	-
#Deleted in new
chr8	139602012	139602064	ENSG00000169427.6|KCNK9|pc|chr8:139602012:139602064:-	0	-
#Deleted in new
chr8	139881087	139881295	ENSG00000167632.14|TRAPPC9|pc|chr8:139881087:139881295:-	0	-
#Deleted in new
chr8	139904431	139904910	ENSG00000167632.14|TRAPPC9|pc|chr8:139904431:139904910:-	0	-
#Deleted in new
chr8	139908616	139908695	ENSG00000167632.14|TRAPPC9|pc|chr8:139908616:139908695:-	0	-
#Deleted in new
chr8	139908616	139908758	ENSG00000167632.14|TRAPPC9|pc|chr8:139908616:139908758:-	0	-
#Deleted in new
chr8	139911237	139911300	ENSG00000253574.5|AC021744.1|lncRNA|chr8:139911237:139911300:+	0	+
#Deleted in new
chr8	139913924	139914091	ENSG00000253574.5|AC021744.1|lncRNA|chr8:139913924:139914091:+	0	+
#Deleted in new
chr8	139914798	139914894	ENSG00000253574.5|AC021744.1|lncRNA|chr8:139914798:139914894:+	0	+
#Deleted in new
chr8	139916397	139916620	ENSG00000253574.5|AC021744.1|lncRNA|chr8:139916397:139916620:+	0	+
#Deleted in new
chr8	140008466	140008591	ENSG00000167632.14|TRAPPC9|pc|chr8:140008466:140008591:-	0	-
#Split in new
chr8	140094893	140100560	ENSG00000282164.2|PEG13|lncRNA|chr8:140094893:140100560:-	0	-
#Deleted in new
chr8	140215909	140216054	ENSG00000167632.14|TRAPPC9|pc|chr8:140215909:140216054:-	0	-
#Deleted in new
chr8	140302684	140302835	ENSG00000167632.14|TRAPPC9|pc|chr8:140302684:140302835:-	0	-
#Deleted in new
chr8	140458280	140458579	ENSG00000167632.14|TRAPPC9|pc|chr8:140458280:140458579:-	0	-
#Deleted in new
chr8	140505812	140508043	ENSG00000259891.1|AC107375.1|lncRNA|chr8:140505812:140508043:-	0	-
#Deleted in new
chr8	140511917	140512025	ENSG00000104472.9|CHRAC1|pc|chr8:140511917:140512025:+	0	+
#Deleted in new
chr8	140511981	140512025	ENSG00000104472.9|CHRAC1|pc|chr8:140511981:140512025:+	0	+
#Partially deleted in new
chr8	140515125	140517137	ENSG00000104472.9|CHRAC1|pc|chr8:140515125:140517137:+	0	+
#Partially deleted in new
chr8	140555407	140556018	ENSG00000123908.11|AGO2|pc|chr8:140555407:140556018:-	0	-
#Deleted in new
chr8	140572557	140572603	ENSG00000123908.11|AGO2|pc|chr8:140572557:140572603:-	0	-
#Partially deleted in new
chr8	140591683	140593201	ENSG00000280326.1|AC067931.3|lncRNA|chr8:140591683:140593201:+	0	+
#Deleted in new
chr8	140605796	140605888	ENSG00000123908.11|AGO2|pc|chr8:140605796:140605888:-	0	-
#Deleted in new
chr8	140626484	140626843	ENSG00000123908.11|AGO2|pc|chr8:140626484:140626843:-	0	-
#Deleted in new
chr8	140660600	140660648	ENSG00000169398.19|PTK2|pc|chr8:140660600:140660648:-	0	-
#Deleted in new
chr8	140662647	140663084	ENSG00000169398.19|PTK2|pc|chr8:140662647:140663084:-	0	-
#Deleted in new
chr8	140662647	140663088	ENSG00000169398.19|PTK2|pc|chr8:140662647:140663088:-	0	-
#Partially deleted in new
chr8	140675459	140675779	ENSG00000169398.19|PTK2|pc|chr8:140675459:140675779:-	0	-
#Deleted in new
chr8	140686869	140687129	ENSG00000169398.19|PTK2|pc|chr8:140686869:140687129:-	0	-
#Partially deleted in new
chr8	140718316	140718355	ENSG00000169398.19|PTK2|pc|chr8:140718316:140718355:-	0	-
#Deleted in new
chr8	140721658	140721788	ENSG00000169398.19|PTK2|pc|chr8:140721658:140721788:-	0	-
#Deleted in new
chr8	140750202	140750409	ENSG00000169398.19|PTK2|pc|chr8:140750202:140750409:-	0	-
#Deleted in new
chr8	140799219	140799297	ENSG00000169398.19|PTK2|pc|chr8:140799219:140799297:-	0	-
#Deleted in new
chr8	140820598	140822414	ENSG00000279786.1|AC105235.1|lncRNA|chr8:140820598:140822414:-	0	-
#Deleted in new
chr8	140909548	140909621	ENSG00000169398.19|PTK2|pc|chr8:140909548:140909621:-	0	-
#Deleted in new
chr8	140927345	140927414	ENSG00000169398.19|PTK2|pc|chr8:140927345:140927414:-	0	-
#Deleted in new
chr8	140934492	140934560	ENSG00000169398.19|PTK2|pc|chr8:140934492:140934560:-	0	-
#Deleted in new
chr8	140934492	140934590	ENSG00000169398.19|PTK2|pc|chr8:140934492:140934590:-	0	-
#Deleted in new
chr8	140948665	140948723	ENSG00000169398.19|PTK2|pc|chr8:140948665:140948723:-	0	-
#Partially deleted in new
chr8	140983841	140983994	ENSG00000169398.19|PTK2|pc|chr8:140983841:140983994:-	0	-
#Partially deleted in new
chr8	140983841	140984039	ENSG00000169398.19|PTK2|pc|chr8:140983841:140984039:-	0	-
#Partially deleted in new
chr8	140983841	140984155	ENSG00000169398.19|PTK2|pc|chr8:140983841:140984155:-	0	-
#Deleted in new
chr8	140984077	140984155	ENSG00000169398.19|PTK2|pc|chr8:140984077:140984155:-	0	-
#Partially deleted in new
chr8	141000879	141001122	ENSG00000169398.19|PTK2|pc|chr8:141000879:141001122:-	0	-
#Partially deleted in new
chr8	141001124	141001177	ENSG00000169398.19|PTK2|pc|chr8:141001124:141001177:-	0	-
#Deleted in new
chr8	141057241	141057423	ENSG00000253266.1|AC100860.1|lncRNA|chr8:141057241:141057423:+	0	+
#Deleted in new
chr8	141059977	141060468	ENSG00000253266.1|AC100860.1|lncRNA|chr8:141059977:141060468:+	0	+
#Deleted in new
chr8	141059977	141060596	ENSG00000253266.1|AC100860.1|lncRNA|chr8:141059977:141060596:+	0	+
#Deleted in new
chr8	141126043	141126471	ENSG00000253210.1|AC040970.1|lncRNA|chr8:141126043:141126471:-	0	-
#Deleted in new
chr8	141126290	141126471	ENSG00000253210.1|AC040970.1|lncRNA|chr8:141126290:141126471:-	0	-
#Deleted in new
chr8	141157394	141158287	ENSG00000105339.10|DENND3|pc|chr8:141157394:141158287:+	0	+
#Partially deleted in new
chr8	141175199	141176266	ENSG00000105339.10|DENND3|pc|chr8:141175199:141176266:+	0	+
#Partially deleted in new
chr8	141184487	141185278	ENSG00000105339.10|DENND3|pc|chr8:141184487:141185278:+	0	+
#Partially deleted in new
chr8	141191273	141192449	ENSG00000105339.10|DENND3|pc|chr8:141191273:141192449:+	0	+
#Partially deleted in new
chr8	141191273	141192663	ENSG00000105339.10|DENND3|pc|chr8:141191273:141192663:+	0	+
#Deleted in new
chr8	141224287	141226947	ENSG00000280035.1|AC011676.5|lncRNA|chr8:141224287:141226947:-	0	-
#Deleted in new
chr8	141228178	141228570	ENSG00000022567.9|SLC45A4|pc|chr8:141228178:141228570:-	0	-
#Deleted in new
chr8	141228178	141228574	ENSG00000022567.9|SLC45A4|pc|chr8:141228178:141228574:-	0	-
#Deleted in new
chr8	141230078	141230348	ENSG00000022567.9|SLC45A4|pc|chr8:141230078:141230348:-	0	-
#Deleted in new
chr8	141256440	141256817	ENSG00000254019.1|AC011676.2|lncRNA|chr8:141256440:141256817:+	0	+
#Deleted in new
chr8	141278227	141278352	ENSG00000254197.1|AC011676.3|lncRNA|chr8:141278227:141278352:+	0	+
#Deleted in new
chr8	141292693	141292862	ENSG00000254197.1|AC011676.3|lncRNA|chr8:141292693:141292862:+	0	+
#Deleted in new
chr8	141326129	141326368	ENSG00000254291.1|AC011676.4|lncRNA|chr8:141326129:141326368:+	0	+
#Deleted in new
chr8	141326963	141327137	ENSG00000254291.1|AC011676.4|lncRNA|chr8:141326963:141327137:+	0	+
#Deleted in new
chr8	141340548	141340672	ENSG00000253595.5|LINC01300|lncRNA|chr8:141340548:141340672:+	0	+
#Deleted in new
chr8	141342324	141342476	ENSG00000253595.5|LINC01300|lncRNA|chr8:141342324:141342476:+	0	+
#Deleted in new
chr8	141342340	141342476	ENSG00000253595.5|LINC01300|lncRNA|chr8:141342340:141342476:+	0	+
#Deleted in new
chr8	141342957	141343215	ENSG00000253595.5|LINC01300|lncRNA|chr8:141342957:141343215:+	0	+
#Deleted in new
chr8	141389938	141391151	ENSG00000244998.1|AC100803.1|lncRNA|chr8:141389938:141391151:-	0	-
#Deleted in new
chr8	141437325	141437520	ENSG00000271959.1|AC100803.3|lncRNA|chr8:141437325:141437520:+	0	+
#Deleted in new
chr8	141437709	141437954	ENSG00000271959.1|AC100803.3|lncRNA|chr8:141437709:141437954:+	0	+
#Deleted in new
chr8	14162582	14162669	ENSG00000254575.1|AC022039.1|lncRNA|chr8:14162582:14162669:+	0	+
#Deleted in new
chr8	142089826	142091619	ENSG00000261710.1|AC104417.2|lncRNA|chr8:142089826:142091619:+	0	+
#Deleted in new
chr8	142198355	142198456	ENSG00000254008.1|LINC00051|lncRNA|chr8:142198355:142198456:+	0	+
#Deleted in new
chr8	142208249	142209003	ENSG00000254008.1|LINC00051|lncRNA|chr8:142208249:142209003:+	0	+
#Partially deleted in new
chr8	142212079	142212313	ENSG00000171045.14|TSNARE1|pc|chr8:142212079:142212313:-	0	-
#Partially deleted in new
chr8	142212080	142212313	ENSG00000171045.14|TSNARE1|pc|chr8:142212080:142212313:-	0	-
#Partially deleted in new
chr8	142212166	142212313	ENSG00000171045.14|TSNARE1|pc|chr8:142212166:142212313:-	0	-
#Deleted in new
chr8	142229472	142229579	ENSG00000171045.14|TSNARE1|pc|chr8:142229472:142229579:-	0	-
#Deleted in new
chr8	142274780	142274863	ENSG00000171045.14|TSNARE1|pc|chr8:142274780:142274863:-	0	-
#Deleted in new
chr8	142279859	142279997	ENSG00000171045.14|TSNARE1|pc|chr8:142279859:142279997:-	0	-
#Deleted in new
chr8	142326052	142326225	ENSG00000171045.14|TSNARE1|pc|chr8:142326052:142326225:-	0	-
#Deleted in new
chr8	142330900	142330970	ENSG00000171045.14|TSNARE1|pc|chr8:142330900:142330970:-	0	-
#Deleted in new
chr8	142331753	142331831	ENSG00000171045.14|TSNARE1|pc|chr8:142331753:142331831:-	0	-
#Deleted in new
chr8	142345742	142345892	ENSG00000171045.14|TSNARE1|pc|chr8:142345742:142345892:-	0	-
#Deleted in new
chr8	142365910	142366017	ENSG00000171045.14|TSNARE1|pc|chr8:142365910:142366017:-	0	-
#Deleted in new
chr8	142403651	142407028	ENSG00000261693.1|AC134682.1|lncRNA|chr8:142403651:142407028:+	0	+
#Deleted in new
chr8	142657462	142658080	ENSG00000234616.8|JRK|pc|chr8:142657462:142658080:-	0	-
#Deleted in new
chr8	142658363	142658944	ENSG00000234616.8|JRK|pc|chr8:142658363:142658944:-	0	-
#Deleted in new
chr8	142658821	142658944	ENSG00000234616.8|JRK|pc|chr8:142658821:142658944:-	0	-
#Deleted in new
chr8	142659297	142659461	ENSG00000234616.8|JRK|pc|chr8:142659297:142659461:-	0	-
#Deleted in new
chr8	142675898	142676208	ENSG00000234616.8|JRK|pc|chr8:142675898:142676208:-	0	-
#Split in new
chr8	142676354	142676531	ENSG00000234616.8|JRK|pc|chr8:142676354:142676531:-	0	-
#Partially deleted in new
chr8	142681704	142681804	ENSG00000234616.8|JRK|pc|chr8:142681704:142681804:-	0	-
#Deleted in new
chr8	142700110	142700630	ENSG00000160886.13|LY6K|pc|chr8:142700110:142700630:+	0	+
#Deleted in new
chr8	142700112	142700630	ENSG00000160886.13|LY6K|pc|chr8:142700112:142700630:+	0	+
#Deleted in new
chr8	142700113	142700630	ENSG00000160886.13|LY6K|pc|chr8:142700113:142700630:+	0	+
#Deleted in new
chr8	142700471	142700630	ENSG00000160886.13|LY6K|pc|chr8:142700471:142700630:+	0	+
#Deleted in new
chr8	142701598	142701713	ENSG00000160886.13|LY6K|pc|chr8:142701598:142701713:+	0	+
#Deleted in new
chr8	142701599	142701713	ENSG00000160886.13|LY6K|pc|chr8:142701599:142701713:+	0	+
#Deleted in new
chr8	142701599	142704164	ENSG00000160886.13|LY6K|pc|chr8:142701599:142704164:+	0	+
#Deleted in new
chr8	142702251	142707579	ENSG00000253741.1|AC108002.1|lncRNA|chr8:142702251:142707579:-	0	-
#Deleted in new
chr8	142702499	142702722	ENSG00000160886.13|LY6K|pc|chr8:142702499:142702722:+	0	+
#Deleted in new
chr8	142702843	142703460	ENSG00000160886.13|LY6K|pc|chr8:142702843:142703460:+	0	+
#Deleted in new
chr8	142703090	142705127	ENSG00000160886.13|LY6K|pc|chr8:142703090:142705127:+	0	+
#Deleted in new
chr8	142703122	142703454	ENSG00000160886.13|LY6K|pc|chr8:142703122:142703454:+	0	+
#Deleted in new
chr8	142708314	142708418	ENSG00000253741.1|AC108002.1|lncRNA|chr8:142708314:142708418:-	0	-
#Deleted in new
chr8	142766137	142766427	ENSG00000253196.1|AC083841.1|lncRNA|chr8:142766137:142766427:+	0	+
#Deleted in new
chr8	142777758	142777810	ENSG00000180155.19|LYNX1|pc|chr8:142777758:142777810:-	0	-
#Deleted in new
chr8	142777758	142778224	ENSG00000284505.1|LYNX1|pc|chr8:142777758:142778224:-	0	-
#Deleted in new
chr8	142811734	142812120	ENSG00000253715.1|AC083841.2|lncRNA|chr8:142811734:142812120:+	0	+
#Deleted in new
chr8	142834137	142834222	ENSG00000253728.5|AC083841.3|lncRNA|chr8:142834137:142834222:-	0	-
#Deleted in new
chr8	142834246	142834289	ENSG00000104499.6|GML|pc|chr8:142834246:142834289:+	0	+
#Deleted in new
chr8	142834647	142834788	ENSG00000253728.5|AC083841.3|lncRNA|chr8:142834647:142834788:-	0	-
#Deleted in new
chr8	142834676	142834940	ENSG00000253728.5|AC083841.3|lncRNA|chr8:142834676:142834940:-	0	-
#Deleted in new
chr8	142834800	142834868	ENSG00000104499.6|GML|pc|chr8:142834800:142834868:+	0	+
#Split in new
chr8	142872355	142874486	ENSG00000160882.11|CYP11B1|pc|chr8:142872355:142874486:-	0	-
#Split in new
chr8	142872356	142874486	ENSG00000160882.11|CYP11B1|pc|chr8:142872356:142874486:-	0	-
#Split in new
chr8	142873253	142874486	ENSG00000160882.11|CYP11B1|pc|chr8:142873253:142874486:-	0	-
#Split in new
chr8	142873823	142874486	ENSG00000160882.11|CYP11B1|pc|chr8:142873823:142874486:-	0	-
#Split in new
chr8	142873824	142874486	ENSG00000160882.11|CYP11B1|pc|chr8:142873824:142874486:-	0	-
#Partially deleted in new
chr8	142910558	142912093	ENSG00000179142.2|CYP11B2|pc|chr8:142910558:142912093:-	0	-
#Partially deleted in new
chr8	142913962	142914045	ENSG00000104499.6|GML|pc|chr8:142913962:142914045:+	0	+
#Deleted in new
chr8	142981737	142982501	ENSG00000247317.3|AC105202.1|lncRNA|chr8:142981737:142982501:-	0	-
#Deleted in new
chr8	142982048	142982501	ENSG00000247317.3|AC105202.1|lncRNA|chr8:142982048:142982501:-	0	-
#Deleted in new
chr8	142994875	142995657	ENSG00000247317.3|AC105202.1|lncRNA|chr8:142994875:142995657:-	0	-
#Deleted in new
chr8	143007752	143009207	ENSG00000247317.3|AC105202.1|lncRNA|chr8:143007752:143009207:-	0	-
#Deleted in new
chr8	143009048	143009207	ENSG00000247317.3|AC105202.1|lncRNA|chr8:143009048:143009207:-	0	-
#Deleted in new
chr8	143012484	143012572	ENSG00000247317.3|AC105202.1|lncRNA|chr8:143012484:143012572:-	0	-
#Deleted in new
chr8	143012484	143012577	ENSG00000247317.3|AC105202.1|lncRNA|chr8:143012484:143012577:-	0	-
#Deleted in new
chr8	143016665	143017146	ENSG00000247317.3|AC105202.1|lncRNA|chr8:143016665:143017146:-	0	-
#Deleted in new
chr8	143017981	143018247	ENSG00000160932.10|LY6E|pc|chr8:143017981:143018247:+	0	+
#Deleted in new
chr8	143018159	143018381	ENSG00000247317.3|AC105202.1|lncRNA|chr8:143018159:143018381:-	0	-
#Deleted in new
chr8	143018159	143018390	ENSG00000247317.3|AC105202.1|lncRNA|chr8:143018159:143018390:-	0	-
#Deleted in new
chr8	143018159	143018397	ENSG00000247317.3|AC105202.1|lncRNA|chr8:143018159:143018397:-	0	-
#Deleted in new
chr8	143018159	143018437	ENSG00000247317.3|AC105202.1|lncRNA|chr8:143018159:143018437:-	0	-
#Deleted in new
chr8	143018481	143018586	ENSG00000160932.10|LY6E|pc|chr8:143018481:143018586:+	0	+
#Deleted in new
chr8	143018482	143018586	ENSG00000160932.10|LY6E|pc|chr8:143018482:143018586:+	0	+
#Deleted in new
chr8	143018516	143018586	ENSG00000160932.10|LY6E|pc|chr8:143018516:143018586:+	0	+
#Deleted in new
chr8	143018527	143018586	ENSG00000160932.10|LY6E|pc|chr8:143018527:143018586:+	0	+
#Deleted in new
chr8	143018528	143018586	ENSG00000160932.10|LY6E|pc|chr8:143018528:143018586:+	0	+
#Deleted in new
chr8	143018541	143018586	ENSG00000160932.10|LY6E|pc|chr8:143018541:143018586:+	0	+
#Deleted in new
chr8	143018543	143018586	ENSG00000160932.10|LY6E|pc|chr8:143018543:143018586:+	0	+
#Deleted in new
chr8	143018545	143018586	ENSG00000160932.10|LY6E|pc|chr8:143018545:143018586:+	0	+
#Deleted in new
chr8	143018551	143018586	ENSG00000160932.10|LY6E|pc|chr8:143018551:143018586:+	0	+
#Deleted in new
chr8	143018552	143018586	ENSG00000160932.10|LY6E|pc|chr8:143018552:143018586:+	0	+
#Deleted in new
chr8	143018556	143018586	ENSG00000160932.10|LY6E|pc|chr8:143018556:143018586:+	0	+
#Deleted in new
chr8	143020261	143020377	ENSG00000160932.10|LY6E|pc|chr8:143020261:143020377:+	0	+
#Deleted in new
chr8	143022548	143023042	ENSG00000160932.10|LY6E|pc|chr8:143022548:143023042:+	0	+
#Deleted in new
chr8	143023668	143023830	ENSG00000160932.10|LY6E|pc|chr8:143023668:143023830:+	0	+
#Deleted in new
chr8	143023668	143023832	ENSG00000160932.10|LY6E|pc|chr8:143023668:143023832:+	0	+
#Deleted in new
chr8	143039208	143039569	ENSG00000177335.10|C8orf31|lncRNA|chr8:143039208:143039569:+	0	+
#Deleted in new
chr8	143039260	143039569	ENSG00000177335.10|C8orf31|lncRNA|chr8:143039260:143039569:+	0	+
#Deleted in new
chr8	143039261	143039569	ENSG00000177335.10|C8orf31|lncRNA|chr8:143039261:143039569:+	0	+
#Deleted in new
chr8	143039294	143039569	ENSG00000177335.10|C8orf31|lncRNA|chr8:143039294:143039569:+	0	+
#Deleted in new
chr8	143042250	143042519	ENSG00000177335.10|C8orf31|lncRNA|chr8:143042250:143042519:+	0	+
#Partially deleted in new
chr8	143042957	143043087	ENSG00000177335.10|C8orf31|lncRNA|chr8:143042957:143043087:+	0	+
#Partially deleted in new
chr8	143043001	143043087	ENSG00000177335.10|C8orf31|lncRNA|chr8:143043001:143043087:+	0	+
#Deleted in new
chr8	143044173	143044234	ENSG00000177335.10|C8orf31|lncRNA|chr8:143044173:143044234:+	0	+
#Deleted in new
chr8	143047678	143047814	ENSG00000177335.10|C8orf31|lncRNA|chr8:143047678:143047814:+	0	+
#Deleted in new
chr8	143047678	143047984	ENSG00000177335.10|C8orf31|lncRNA|chr8:143047678:143047984:+	0	+
#Deleted in new
chr8	143049208	143049252	ENSG00000177335.10|C8orf31|lncRNA|chr8:143049208:143049252:+	0	+
#Deleted in new
chr8	143049208	143049298	ENSG00000177335.10|C8orf31|lncRNA|chr8:143049208:143049298:+	0	+
#Deleted in new
chr8	143053225	143053444	ENSG00000177335.10|C8orf31|lncRNA|chr8:143053225:143053444:+	0	+
#Deleted in new
chr8	143053225	143053938	ENSG00000177335.10|C8orf31|lncRNA|chr8:143053225:143053938:+	0	+
#Deleted in new
chr8	143053225	143054303	ENSG00000177335.10|C8orf31|lncRNA|chr8:143053225:143054303:+	0	+
#Deleted in new
chr8	143059652	143059942	ENSG00000177335.10|C8orf31|lncRNA|chr8:143059652:143059942:+	0	+
#Deleted in new
chr8	143080456	143080659	ENSG00000261667.1|LY6L|pc|chr8:143080456:143080659:+	0	+
#Partially deleted in new
chr8	143246820	143247749	ENSG00000181638.17|ZFP41|pc|chr8:143246820:143247749:+	0	+
#Deleted in new
chr8	143246927	143247142	ENSG00000181638.17|ZFP41|pc|chr8:143246927:143247142:+	0	+
#Deleted in new
chr8	143246930	143247142	ENSG00000181638.17|ZFP41|pc|chr8:143246930:143247142:+	0	+
#Partially deleted in new
chr8	143247109	143247749	ENSG00000264668.1|AC138696.1|pc|chr8:143247109:143247749:+	0	+
#Deleted in new
chr8	143248154	143248490	ENSG00000181638.17|ZFP41|pc|chr8:143248154:143248490:+	0	+
#Partially deleted in new
chr8	143252887	143253591	ENSG00000181638.17|ZFP41|pc|chr8:143252887:143253591:+	0	+
#Partially deleted in new
chr8	143259774	143262705	ENSG00000181638.17|ZFP41|pc|chr8:143259774:143262705:+	0	+
#Deleted in new
chr8	143272395	143272474	ENSG00000250571.6|GLI4|pc|chr8:143272395:143272474:+	0	+
#Deleted in new
chr8	143273090	143273383	ENSG00000250571.6|GLI4|pc|chr8:143273090:143273383:+	0	+
#Partially deleted in new
chr8	143274703	143275552	ENSG00000250571.6|GLI4|pc|chr8:143274703:143275552:+	0	+
#Deleted in new
chr8	143274977	143275694	ENSG00000250571.6|GLI4|pc|chr8:143274977:143275694:+	0	+
#Deleted in new
chr8	143274977	143275751	ENSG00000250571.6|GLI4|pc|chr8:143274977:143275751:+	0	+
#Deleted in new
chr8	143275194	143275305	ENSG00000250571.6|GLI4|pc|chr8:143275194:143275305:+	0	+
#Deleted in new
chr8	143280160	143280849	ENSG00000253716.5|MINCR|lncRNA|chr8:143280160:143280849:-	0	-
#Deleted in new
chr8	143280165	143280515	ENSG00000253716.5|MINCR|lncRNA|chr8:143280165:143280515:-	0	-
#Deleted in new
chr8	143280827	143280997	ENSG00000253716.5|MINCR|lncRNA|chr8:143280827:143280997:-	0	-
#Deleted in new
chr8	143280881	143280997	ENSG00000253716.5|MINCR|lncRNA|chr8:143280881:143280997:-	0	-
#Deleted in new
chr8	143281025	143281325	ENSG00000253716.5|MINCR|lncRNA|chr8:143281025:143281325:-	0	-
#Deleted in new
chr8	143281069	143281384	ENSG00000253716.5|MINCR|lncRNA|chr8:143281069:143281384:-	0	-
#Deleted in new
chr8	143281092	143281250	ENSG00000253716.5|MINCR|lncRNA|chr8:143281092:143281250:-	0	-
#Deleted in new
chr8	143281481	143281610	ENSG00000253716.5|MINCR|lncRNA|chr8:143281481:143281610:-	0	-
#Deleted in new
chr8	143281481	143281660	ENSG00000253716.5|MINCR|lncRNA|chr8:143281481:143281660:-	0	-
#Deleted in new
chr8	143281481	143281665	ENSG00000253716.5|MINCR|lncRNA|chr8:143281481:143281665:-	0	-
#Deleted in new
chr8	143281481	143281690	ENSG00000253716.5|MINCR|lncRNA|chr8:143281481:143281690:-	0	-
#Deleted in new
chr8	143289675	143289818	ENSG00000185730.7|ZNF696|pc|chr8:143289675:143289818:+	0	+
#Deleted in new
chr8	143290398	143290621	ENSG00000272172.1|AC138696.2|lncRNA|chr8:143290398:143290621:-	0	-
#Deleted in new
chr8	143290744	143290858	ENSG00000185730.7|ZNF696|pc|chr8:143290744:143290858:+	0	+
#Deleted in new
chr8	143290909	143291767	ENSG00000185730.7|ZNF696|pc|chr8:143290909:143291767:+	0	+
#Deleted in new
chr8	143291388	143291767	ENSG00000185730.7|ZNF696|pc|chr8:143291388:143291767:+	0	+
#Deleted in new
chr8	143291403	143291767	ENSG00000185730.7|ZNF696|pc|chr8:143291403:143291767:+	0	+
#Deleted in new
chr8	143291416	143291610	ENSG00000185730.7|ZNF696|pc|chr8:143291416:143291610:+	0	+
#Deleted in new
chr8	143291421	143291767	ENSG00000185730.7|ZNF696|pc|chr8:143291421:143291767:+	0	+
#Deleted in new
chr8	143292142	143292284	ENSG00000185730.7|ZNF696|pc|chr8:143292142:143292284:+	0	+
#Deleted in new
chr8	143292971	143293065	ENSG00000185730.7|ZNF696|pc|chr8:143292971:143293065:+	0	+
#Deleted in new
chr8	143292971	143293312	ENSG00000185730.7|ZNF696|pc|chr8:143292971:143293312:+	0	+
#Deleted in new
chr8	143295378	143295470	ENSG00000185730.7|ZNF696|pc|chr8:143295378:143295470:+	0	+
#Deleted in new
chr8	143295739	143295812	ENSG00000185730.7|ZNF696|pc|chr8:143295739:143295812:+	0	+
#Deleted in new
chr8	143304383	143304915	ENSG00000184428.12|TOP1MT|pc|chr8:143304383:143304915:-	0	-
#Deleted in new
chr8	143327302	143327790	ENSG00000184428.12|TOP1MT|pc|chr8:143327302:143327790:-	0	-
#Deleted in new
chr8	143328192	143328315	ENSG00000184428.12|TOP1MT|pc|chr8:143328192:143328315:-	0	-
#Deleted in new
chr8	143332486	143332601	ENSG00000184428.12|TOP1MT|pc|chr8:143332486:143332601:-	0	-
#Deleted in new
chr8	143332486	143332657	ENSG00000184428.12|TOP1MT|pc|chr8:143332486:143332657:-	0	-
#Deleted in new
chr8	143332502	143332601	ENSG00000184428.12|TOP1MT|pc|chr8:143332502:143332601:-	0	-
#Deleted in new
chr8	143333795	143333927	ENSG00000184428.12|TOP1MT|pc|chr8:143333795:143333927:-	0	-
#Deleted in new
chr8	143333795	143334056	ENSG00000184428.12|TOP1MT|pc|chr8:143333795:143334056:-	0	-
#Deleted in new
chr8	143334107	143334285	ENSG00000184428.12|TOP1MT|pc|chr8:143334107:143334285:-	0	-
#Deleted in new
chr8	143334739	143334795	ENSG00000184428.12|TOP1MT|pc|chr8:143334739:143334795:-	0	-
#Deleted in new
chr8	143334739	143334821	ENSG00000184428.12|TOP1MT|pc|chr8:143334739:143334821:-	0	-
#Deleted in new
chr8	143334739	143334844	ENSG00000184428.12|TOP1MT|pc|chr8:143334739:143334844:-	0	-
#Deleted in new
chr8	143334739	143334854	ENSG00000184428.12|TOP1MT|pc|chr8:143334739:143334854:-	0	-
#Deleted in new
chr8	143334739	143334863	ENSG00000184428.12|TOP1MT|pc|chr8:143334739:143334863:-	0	-
#Deleted in new
chr8	143334739	143334866	ENSG00000184428.12|TOP1MT|pc|chr8:143334739:143334866:-	0	-
#Deleted in new
chr8	143334739	143334896	ENSG00000184428.12|TOP1MT|pc|chr8:143334739:143334896:-	0	-
#Deleted in new
chr8	143343198	143344981	ENSG00000184428.12|TOP1MT|pc|chr8:143343198:143344981:-	0	-
#Deleted in new
chr8	143343219	143343286	ENSG00000184428.12|TOP1MT|pc|chr8:143343219:143343286:-	0	-
#Deleted in new
chr8	143344736	143344981	ENSG00000184428.12|TOP1MT|pc|chr8:143344736:143344981:-	0	-
#Deleted in new
chr8	143344915	143344981	ENSG00000184428.12|TOP1MT|pc|chr8:143344915:143344981:-	0	-
#Deleted in new
chr8	143344915	143344984	ENSG00000184428.12|TOP1MT|pc|chr8:143344915:143344984:-	0	-
#Deleted in new
chr8	143359263	143359404	ENSG00000184428.12|TOP1MT|pc|chr8:143359263:143359404:-	0	-
#Deleted in new
chr8	143359874	143359924	ENSG00000184428.12|TOP1MT|pc|chr8:143359874:143359924:-	0	-
#Deleted in new
chr8	143359874	143359960	ENSG00000184428.12|TOP1MT|pc|chr8:143359874:143359960:-	0	-
#Deleted in new
chr8	143359874	143359977	ENSG00000184428.12|TOP1MT|pc|chr8:143359874:143359977:-	0	-
#Deleted in new
chr8	143359874	143359979	ENSG00000184428.12|TOP1MT|pc|chr8:143359874:143359979:-	0	-
#Partially deleted in new
chr8	143413191	143413482	ENSG00000253931.1|AC105118.1|lncRNA|chr8:143413191:143413482:+	0	+
#Deleted in new
chr8	143416909	143417054	ENSG00000253931.1|AC105118.1|lncRNA|chr8:143416909:143417054:+	0	+
#Deleted in new
chr8	143417678	143417919	ENSG00000254338.1|MAFA-AS1|lncRNA|chr8:143417678:143417919:+	0	+
#Partially deleted in new
chr8	143418974	143419150	ENSG00000254338.1|MAFA-AS1|lncRNA|chr8:143418974:143419150:+	0	+
#Deleted in new
chr8	143541972	143542396	ENSG00000254859.1|AC067930.4|lncRNA|chr8:143541972:143542396:-	0	-
#Deleted in new
chr8	143542109	143542400	ENSG00000254144.3|AC067930.1|lncRNA|chr8:143542109:143542400:+	0	+
#Deleted in new
chr8	143549655	143549729	ENSG00000254859.1|AC067930.4|lncRNA|chr8:143549655:143549729:-	0	-
#Deleted in new
chr8	143555933	143556030	ENSG00000104518.10|GSDMD|pc|chr8:143555933:143556030:+	0	+
#Deleted in new
chr8	143557885	143558021	ENSG00000104518.10|GSDMD|pc|chr8:143557885:143558021:+	0	+
#Deleted in new
chr8	143557912	143558021	ENSG00000104518.10|GSDMD|pc|chr8:143557912:143558021:+	0	+
#Deleted in new
chr8	143573489	143573566	ENSG00000255050.1|AC067930.5|lncRNA|chr8:143573489:143573566:+	0	+
#Deleted in new
chr8	143578585	143578649	ENSG00000147813.15|NAPRT|pc|chr8:143578585:143578649:-	0	-
#Partially deleted in new
chr8	143581053	143584251	ENSG00000104529.17|EEF1D|pc|chr8:143581053:143584251:-	0	-
#Deleted in new
chr8	143590607	143590729	ENSG00000104529.17|EEF1D|pc|chr8:143590607:143590729:-	0	-
#Deleted in new
chr8	143590607	143590735	ENSG00000104529.17|EEF1D|pc|chr8:143590607:143590735:-	0	-
#Deleted in new
chr8	143590607	143590738	ENSG00000104529.17|EEF1D|pc|chr8:143590607:143590738:-	0	-
#Deleted in new
chr8	143590607	143590893	ENSG00000104529.17|EEF1D|pc|chr8:143590607:143590893:-	0	-
#Deleted in new
chr8	143590644	143590735	ENSG00000104529.17|EEF1D|pc|chr8:143590644:143590735:-	0	-
#Deleted in new
chr8	143590644	143590738	ENSG00000104529.17|EEF1D|pc|chr8:143590644:143590738:-	0	-
#Deleted in new
chr8	143593874	143594071	ENSG00000104529.17|EEF1D|pc|chr8:143593874:143594071:-	0	-
#Deleted in new
chr8	143593892	143594071	ENSG00000104529.17|EEF1D|pc|chr8:143593892:143594071:-	0	-
#Deleted in new
chr8	143609675	143609773	ENSG00000104524.13|PYCR3|pc|chr8:143609675:143609773:-	0	-
#Deleted in new
chr8	143617927	143618048	ENSG00000104522.15|TSTA3|pc|chr8:143617927:143618048:-	0	-
#Deleted in new
chr8	143632070	143632464	ENSG00000254812.1|AC067930.3|lncRNA|chr8:143632070:143632464:-	0	-
#Deleted in new
chr8	143633449	143633756	ENSG00000254812.1|AC067930.3|lncRNA|chr8:143633449:143633756:-	0	-
#Deleted in new
chr8	143636012	143636145	ENSG00000183309.11|ZNF623|pc|chr8:143636012:143636145:+	0	+
#Deleted in new
chr8	143636161	143636415	ENSG00000183309.11|ZNF623|pc|chr8:143636161:143636415:+	0	+
#Deleted in new
chr8	143684451	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684451:143684542:+	0	+
#Deleted in new
chr8	143684452	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684452:143684542:+	0	+
#Deleted in new
chr8	143684455	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684455:143684542:+	0	+
#Deleted in new
chr8	143684461	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684461:143684542:+	0	+
#Deleted in new
chr8	143684472	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684472:143684542:+	0	+
#Deleted in new
chr8	143684478	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684478:143684542:+	0	+
#Deleted in new
chr8	143684480	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684480:143684542:+	0	+
#Deleted in new
chr8	143684481	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684481:143684542:+	0	+
#Deleted in new
chr8	143684481	143685067	ENSG00000181135.15|ZNF707|pc|chr8:143684481:143685067:+	0	+
#Deleted in new
chr8	143684482	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684482:143684542:+	0	+
#Deleted in new
chr8	143684483	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684483:143684542:+	0	+
#Deleted in new
chr8	143684486	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684486:143684542:+	0	+
#Deleted in new
chr8	143684491	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684491:143684542:+	0	+
#Deleted in new
chr8	143684504	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684504:143684542:+	0	+
#Deleted in new
chr8	143684506	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684506:143684542:+	0	+
#Deleted in new
chr8	143684507	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684507:143684542:+	0	+
#Deleted in new
chr8	143684509	143684542	ENSG00000181135.15|ZNF707|pc|chr8:143684509:143684542:+	0	+
#Deleted in new
chr8	143684623	143684755	ENSG00000181135.15|ZNF707|pc|chr8:143684623:143684755:+	0	+
#Deleted in new
chr8	143684755	143685067	ENSG00000181135.15|ZNF707|pc|chr8:143684755:143685067:+	0	+
#Deleted in new
chr8	143686916	143687014	ENSG00000181135.15|ZNF707|pc|chr8:143686916:143687014:+	0	+
#Deleted in new
chr8	143687380	143687478	ENSG00000181135.15|ZNF707|pc|chr8:143687380:143687478:+	0	+
#Deleted in new
chr8	143687993	143688067	ENSG00000181135.15|ZNF707|pc|chr8:143687993:143688067:+	0	+
#Deleted in new
chr8	143688658	143689301	ENSG00000181135.15|ZNF707|pc|chr8:143688658:143689301:+	0	+
#Deleted in new
chr8	143688661	143689301	ENSG00000181135.15|ZNF707|pc|chr8:143688661:143689301:+	0	+
#Deleted in new
chr8	143689203	143689301	ENSG00000181135.15|ZNF707|pc|chr8:143689203:143689301:+	0	+
#Deleted in new
chr8	143690056	143690099	ENSG00000181135.15|ZNF707|pc|chr8:143690056:143690099:+	0	+
#Deleted in new
chr8	143690056	143690123	ENSG00000181135.15|ZNF707|pc|chr8:143690056:143690123:+	0	+
#Deleted in new
chr8	143690056	143690419	ENSG00000181135.15|ZNF707|pc|chr8:143690056:143690419:+	0	+
#Deleted in new
chr8	143692000	143692107	ENSG00000181135.15|ZNF707|pc|chr8:143692000:143692107:+	0	+
#Deleted in new
chr8	143692244	143692330	ENSG00000181135.15|ZNF707|pc|chr8:143692244:143692330:+	0	+
#Deleted in new
chr8	143696153	143697641	ENSG00000181097.5|AC105219.1|lncRNA|chr8:143696153:143697641:+	0	+
#Deleted in new
chr8	143697938	143698413	ENSG00000181097.5|AC105219.1|lncRNA|chr8:143697938:143698413:+	0	+
#Deleted in new
chr8	143709006	143709169	ENSG00000254574.1|AC105219.3|lncRNA|chr8:143709006:143709169:-	0	-
#Deleted in new
chr8	143709252	143709308	ENSG00000181135.15|ZNF707|pc|chr8:143709252:143709308:+	0	+
#Deleted in new
chr8	143710747	143710815	ENSG00000181135.15|ZNF707|pc|chr8:143710747:143710815:+	0	+
#Deleted in new
chr8	143712083	143712102	ENSG00000181135.15|ZNF707|pc|chr8:143712083:143712102:+	0	+
#Deleted in new
chr8	143712629	143712737	ENSG00000181135.15|ZNF707|pc|chr8:143712629:143712737:+	0	+
#Deleted in new
chr8	143712629	143712807	ENSG00000181135.15|ZNF707|pc|chr8:143712629:143712807:+	0	+
#Deleted in new
chr8	143712933	143713007	ENSG00000254574.1|AC105219.3|lncRNA|chr8:143712933:143713007:-	0	-
#Deleted in new
chr8	143713017	143713898	ENSG00000181135.15|ZNF707|pc|chr8:143713017:143713898:+	0	+
#Deleted in new
chr8	143713314	143713410	ENSG00000254574.1|AC105219.3|lncRNA|chr8:143713314:143713410:-	0	-
#Deleted in new
chr8	143713543	143713584	ENSG00000254574.1|AC105219.3|lncRNA|chr8:143713543:143713584:-	0	-
#Deleted in new
chr8	143741751	143742135	ENSG00000203499.11|IQANK1|pc|chr8:143741751:143742135:+	0	+
#Deleted in new
chr8	143743859	143746337	ENSG00000203499.11|IQANK1|pc|chr8:143743859:143746337:+	0	+
#Deleted in new
chr8	143760369	143760508	ENSG00000254973.1|AC105219.4|lncRNA|chr8:143760369:143760508:-	0	-
#Deleted in new
chr8	143827384	143827536	ENSG00000179950.13|PUF60|pc|chr8:143827384:143827536:-	0	-
#Deleted in new
chr8	143958594	143958799	ENSG00000178209.14|PLEC|pc|chr8:143958594:143958799:-	0	-
#Deleted in new
chr8	144100742	144100842	ENSG00000179526.16|SHARPIN|pc|chr8:144100742:144100842:-	0	-
#Partially deleted in new
chr8	144116090	144118315	ENSG00000179698.13|WDR97|pc|chr8:144116090:144118315:+	0	+
#Deleted in new
chr8	144160969	144161089	ENSG00000179832.17|MROH1|pc|chr8:144160969:144161089:+	0	+
#Deleted in new
chr8	144161024	144161089	ENSG00000179832.17|MROH1|pc|chr8:144161024:144161089:+	0	+
#Partially deleted in new
chr8	144192308	144193282	ENSG00000179832.17|MROH1|pc|chr8:144192308:144193282:+	0	+
#Partially deleted in new
chr8	144200427	144201179	ENSG00000179832.17|MROH1|pc|chr8:144200427:144201179:+	0	+
#Deleted in new
chr8	144212993	144213467	ENSG00000179832.17|MROH1|pc|chr8:144212993:144213467:+	0	+
#Deleted in new
chr8	144214005	144214489	ENSG00000179832.17|MROH1|pc|chr8:144214005:144214489:+	0	+
#Partially deleted in new
chr8	144250211	144252668	ENSG00000179832.17|MROH1|pc|chr8:144250211:144252668:+	0	+
#Partially deleted in new
chr8	144281683	144281933	ENSG00000261236.7|BOP1|pc|chr8:144281683:144281933:-	0	-
#Deleted in new
chr8	144293461	144293580	ENSG00000185122.10|HSF1|pc|chr8:144293461:144293580:+	0	+
#Partially deleted in new
chr8	144309771	144311249	ENSG00000185122.10|HSF1|pc|chr8:144309771:144311249:+	0	+
#Partially deleted in new
chr8	144310398	144311249	ENSG00000185122.10|HSF1|pc|chr8:144310398:144311249:+	0	+
#Deleted in new
chr8	144314925	144315138	ENSG00000185000.11|DGAT1|pc|chr8:144314925:144315138:-	0	-
#Deleted in new
chr8	144314925	144315138	ENSG00000254690.1|AC233992.1|lncRNA|chr8:144314925:144315138:-	0	-
#Deleted in new
chr8	144373100	144373260	ENSG00000173137.11|ADCK5|pc|chr8:144373100:144373260:+	0	+
#Deleted in new
chr8	144373809	144373892	ENSG00000173137.11|ADCK5|pc|chr8:144373809:144373892:+	0	+
#Deleted in new
chr8	144373836	144373892	ENSG00000173137.11|ADCK5|pc|chr8:144373836:144373892:+	0	+
#Deleted in new
chr8	144374041	144374107	ENSG00000173137.11|ADCK5|pc|chr8:144374041:144374107:+	0	+
#Deleted in new
chr8	144374045	144374107	ENSG00000173137.11|ADCK5|pc|chr8:144374045:144374107:+	0	+
#Deleted in new
chr8	144374051	144374107	ENSG00000173137.11|ADCK5|pc|chr8:144374051:144374107:+	0	+
#Deleted in new
chr8	144374054	144374107	ENSG00000173137.11|ADCK5|pc|chr8:144374054:144374107:+	0	+
#Deleted in new
chr8	144374060	144374107	ENSG00000173137.11|ADCK5|pc|chr8:144374060:144374107:+	0	+
#Deleted in new
chr8	144374075	144374107	ENSG00000173137.11|ADCK5|pc|chr8:144374075:144374107:+	0	+
#Deleted in new
chr8	144375465	144375637	ENSG00000173137.11|ADCK5|pc|chr8:144375465:144375637:+	0	+
#Deleted in new
chr8	144377392	144377490	ENSG00000173137.11|ADCK5|pc|chr8:144377392:144377490:+	0	+
#Deleted in new
chr8	144389262	144389336	ENSG00000173137.11|ADCK5|pc|chr8:144389262:144389336:+	0	+
#Deleted in new
chr8	144409491	144409976	ENSG00000272115.1|AC233992.3|lncRNA|chr8:144409491:144409976:+	0	+
#Deleted in new
chr8	144409741	144409921	ENSG00000147804.9|SLC39A4|pc|chr8:144409741:144409921:-	0	-
#Partially deleted in new
chr8	144426908	144427291	ENSG00000160948.13|VPS28|pc|chr8:144426908:144427291:-	0	-
#Partially deleted in new
chr8	144426908	144427294	ENSG00000160948.13|VPS28|pc|chr8:144426908:144427294:-	0	-
#Deleted in new
chr8	144437674	144437746	ENSG00000232600.3|TONSL-AS1|lncRNA|chr8:144437674:144437746:+	0	+
#Deleted in new
chr8	144438227	144438333	ENSG00000232600.3|TONSL-AS1|lncRNA|chr8:144438227:144438333:+	0	+
#Partially deleted in new
chr8	144465570	144465648	ENSG00000187954.12|CYHR1|pc|chr8:144465570:144465648:-	0	-
#Deleted in new
chr8	144470581	144470677	ENSG00000167702.11|KIFC2|pc|chr8:144470581:144470677:+	0	+
#Deleted in new
chr8	144478097	144478127	ENSG00000160972.9|PPP1R16A|pc|chr8:144478097:144478127:+	0	+
#Deleted in new
chr8	144490029	144490212	ENSG00000160972.9|PPP1R16A|pc|chr8:144490029:144490212:+	0	+
#Deleted in new
chr8	144490033	144490212	ENSG00000160972.9|PPP1R16A|pc|chr8:144490033:144490212:+	0	+
#Deleted in new
chr8	144490040	144490212	ENSG00000160972.9|PPP1R16A|pc|chr8:144490040:144490212:+	0	+
#Deleted in new
chr8	144490093	144490212	ENSG00000160972.9|PPP1R16A|pc|chr8:144490093:144490212:+	0	+
#Deleted in new
chr8	144495457	144495481	ENSG00000255182.2|AC084125.2|lncRNA|chr8:144495457:144495481:-	0	-
#Deleted in new
chr8	144495619	144495756	ENSG00000160972.9|PPP1R16A|pc|chr8:144495619:144495756:+	0	+
#Deleted in new
chr8	144586258	144586488	ENSG00000255456.1|AC084125.3|lncRNA|chr8:144586258:144586488:+	0	+
#Deleted in new
chr8	144698613	144699185	ENSG00000254533.1|AF186192.1|lncRNA|chr8:144698613:144699185:-	0	-
#Deleted in new
chr8	144713898	144714845	ENSG00000263612.1|AF186192.3|lncRNA|chr8:144713898:144714845:+	0	+
#Deleted in new
chr8	144720906	144721022	ENSG00000198169.8|ZNF251|pc|chr8:144720906:144721022:-	0	-
#Partially deleted in new
chr8	144778037	144778525	ENSG00000196378.11|ZNF34|pc|chr8:144778037:144778525:-	0	-
#Deleted in new
chr8	144778438	144778525	ENSG00000196378.11|ZNF34|pc|chr8:144778438:144778525:-	0	-
#Deleted in new
chr8	144780227	144780280	ENSG00000196378.11|ZNF34|pc|chr8:144780227:144780280:-	0	-
#Deleted in new
chr8	144780227	144780282	ENSG00000196378.11|ZNF34|pc|chr8:144780227:144780282:-	0	-
#Deleted in new
chr8	144780231	144780280	ENSG00000196378.11|ZNF34|pc|chr8:144780231:144780280:-	0	-
#Deleted in new
chr8	144787278	144787304	ENSG00000196378.11|ZNF34|pc|chr8:144787278:144787304:-	0	-
#Deleted in new
chr8	144787278	144787307	ENSG00000196378.11|ZNF34|pc|chr8:144787278:144787307:-	0	-
#Deleted in new
chr8	144787278	144787325	ENSG00000196378.11|ZNF34|pc|chr8:144787278:144787325:-	0	-
#Deleted in new
chr8	144787278	144787345	ENSG00000196378.11|ZNF34|pc|chr8:144787278:144787345:-	0	-
#Deleted in new
chr8	144798875	144798937	ENSG00000197363.9|ZNF517|pc|chr8:144798875:144798937:+	0	+
#Deleted in new
chr8	144798893	144798937	ENSG00000197363.9|ZNF517|pc|chr8:144798893:144798937:+	0	+
#Deleted in new
chr8	144798902	144798937	ENSG00000197363.9|ZNF517|pc|chr8:144798902:144798937:+	0	+
#Deleted in new
chr8	144798916	144798937	ENSG00000197363.9|ZNF517|pc|chr8:144798916:144798937:+	0	+
#Deleted in new
chr8	144802869	144802947	ENSG00000197363.9|ZNF517|pc|chr8:144802869:144802947:+	0	+
#Partially deleted in new
chr8	144802869	144804238	ENSG00000197363.9|ZNF517|pc|chr8:144802869:144804238:+	0	+
#Deleted in new
chr8	144802887	144802947	ENSG00000197363.9|ZNF517|pc|chr8:144802887:144802947:+	0	+
#Deleted in new
chr8	144807190	144807327	ENSG00000197363.9|ZNF517|pc|chr8:144807190:144807327:+	0	+
#Deleted in new
chr8	144809217	144810076	ENSG00000197363.9|ZNF517|pc|chr8:144809217:144810076:+	0	+
#Deleted in new
chr8	144810105	144810267	ENSG00000197363.9|ZNF517|pc|chr8:144810105:144810267:+	0	+
#Deleted in new
chr8	144810105	144811169	ENSG00000197363.9|ZNF517|pc|chr8:144810105:144811169:+	0	+
#Deleted in new
chr8	144810791	144811113	ENSG00000197363.9|ZNF517|pc|chr8:144810791:144811113:+	0	+
#Deleted in new
chr8	144830930	144831029	ENSG00000147789.15|ZNF7|pc|chr8:144830930:144831029:+	0	+
#Split in new
chr8	144833732	144837507	ENSG00000147789.15|ZNF7|pc|chr8:144833732:144837507:+	0	+
#Deleted in new
chr8	144838007	144838848	ENSG00000147789.15|ZNF7|pc|chr8:144838007:144838848:+	0	+
#Deleted in new
chr8	144845978	144846195	ENSG00000147789.15|ZNF7|pc|chr8:144845978:144846195:+	0	+
#Deleted in new
chr8	144845978	144847509	ENSG00000147789.15|ZNF7|pc|chr8:144845978:144847509:+	0	+
#Deleted in new
chr8	144852379	144852657	ENSG00000170619.9|COMMD5|pc|chr8:144852379:144852657:-	0	-
#Partially deleted in new
chr8	144852725	144853003	ENSG00000170619.9|COMMD5|pc|chr8:144852725:144853003:-	0	-
#Partially deleted in new
chr8	144852725	144853067	ENSG00000170619.9|COMMD5|pc|chr8:144852725:144853067:-	0	-
#Partially deleted in new
chr8	144852838	144853034	ENSG00000170619.9|COMMD5|pc|chr8:144852838:144853034:-	0	-
#Deleted in new
chr8	144853371	144853736	ENSG00000170619.9|COMMD5|pc|chr8:144853371:144853736:-	0	-
#Deleted in new
chr8	144876496	144876661	ENSG00000196150.13|ZNF250|pc|chr8:144876496:144876661:-	0	-
#Deleted in new
chr8	144876535	144876661	ENSG00000196150.13|ZNF250|pc|chr8:144876535:144876661:-	0	-
#Partially deleted in new
chr8	144876950	144882836	ENSG00000196150.13|ZNF250|pc|chr8:144876950:144882836:-	0	-
#Deleted in new
chr8	144880364	144880458	ENSG00000196150.13|ZNF250|pc|chr8:144880364:144880458:-	0	-
#Deleted in new
chr8	144886839	144886902	ENSG00000196150.13|ZNF250|pc|chr8:144886839:144886902:-	0	-
#Deleted in new
chr8	144895142	144895232	ENSG00000196150.13|ZNF250|pc|chr8:144895142:144895232:-	0	-
#Deleted in new
chr8	144901336	144901426	ENSG00000196150.13|ZNF250|pc|chr8:144901336:144901426:-	0	-
#Deleted in new
chr8	144901398	144901423	ENSG00000196150.13|ZNF250|pc|chr8:144901398:144901423:-	0	-
#Deleted in new
chr8	144901398	144901431	ENSG00000196150.13|ZNF250|pc|chr8:144901398:144901431:-	0	-
#Deleted in new
chr8	144901398	144901453	ENSG00000196150.13|ZNF250|pc|chr8:144901398:144901453:-	0	-
#Deleted in new
chr8	144901398	144901461	ENSG00000196150.13|ZNF250|pc|chr8:144901398:144901461:-	0	-
#Deleted in new
chr8	144901398	144901465	ENSG00000196150.13|ZNF250|pc|chr8:144901398:144901465:-	0	-
#Deleted in new
chr8	144901398	144901479	ENSG00000196150.13|ZNF250|pc|chr8:144901398:144901479:-	0	-
#Deleted in new
chr8	144901748	144902168	ENSG00000196150.13|ZNF250|pc|chr8:144901748:144902168:-	0	-
#Split in new
chr8	144944088	144946215	ENSG00000170631.14|ZNF16|pc|chr8:144944088:144946215:-	0	-
#Partially deleted in new
chr8	144947939	144948025	ENSG00000170631.14|ZNF16|pc|chr8:144947939:144948025:-	0	-
#Deleted in new
chr8	144947956	144948035	ENSG00000170631.14|ZNF16|pc|chr8:144947956:144948035:-	0	-
#Deleted in new
chr8	144947956	144948530	ENSG00000170631.14|ZNF16|pc|chr8:144947956:144948530:-	0	-
#Deleted in new
chr8	144950401	144950595	ENSG00000170631.14|ZNF16|pc|chr8:144950401:144950595:-	0	-
#Deleted in new
chr8	144950796	144950819	ENSG00000170631.14|ZNF16|pc|chr8:144950796:144950819:-	0	-
#Deleted in new
chr8	144950796	144950875	ENSG00000170631.14|ZNF16|pc|chr8:144950796:144950875:-	0	-
#Deleted in new
chr8	144950796	144950888	ENSG00000170631.14|ZNF16|pc|chr8:144950796:144950888:-	0	-
#Deleted in new
chr8	144992913	144993013	ENSG00000255164.1|AF235103.1|lncRNA|chr8:144992913:144993013:+	0	+
#Split in new
chr8	145002810	145006046	ENSG00000255559.1|ZNF252P-AS1|lncRNA|chr8:145002810:145006046:+	0	+
#Deleted in new
chr8	14879056	14879300	ENSG00000255076.2|AC084838.1|lncRNA|chr8:14879056:14879300:-	0	-
#Deleted in new
chr8	14879751	14879819	ENSG00000255076.2|AC084838.1|lncRNA|chr8:14879751:14879819:-	0	-
#Deleted in new
chr8	15417214	15417305	ENSG00000104723.20|TUSC3|pc|chr8:15417214:15417305:+	0	+
#Deleted in new
chr8	15483385	15483483	ENSG00000104723.20|TUSC3|pc|chr8:15483385:15483483:+	0	+
#Deleted in new
chr8	15561618	15561685	ENSG00000104723.20|TUSC3|pc|chr8:15561618:15561685:+	0	+
#Deleted in new
chr8	15973314	15973430	ENSG00000253648.1|AC018437.2|lncRNA|chr8:15973314:15973430:+	0	+
#Deleted in new
chr8	1604551	1604744	ENSG00000253267.5|DLGAP2-AS1|lncRNA|chr8:1604551:1604744:-	0	-
#Partially deleted in new
chr8	16107877	16110218	ENSG00000038945.14|MSR1|pc|chr8:16107877:16110218:-	0	-
#Deleted in new
chr8	16120888	16121180	ENSG00000038945.14|MSR1|pc|chr8:16120888:16121180:-	0	-
#Deleted in new
chr8	16186158	16186272	ENSG00000038945.14|MSR1|pc|chr8:16186158:16186272:-	0	-
#Deleted in new
chr8	1619698	1619893	ENSG00000253267.5|DLGAP2-AS1|lncRNA|chr8:1619698:1619893:-	0	-
#Deleted in new
chr8	1620373	1620513	ENSG00000253267.5|DLGAP2-AS1|lncRNA|chr8:1620373:1620513:-	0	-
#Deleted in new
chr8	1620373	1620535	ENSG00000253267.5|DLGAP2-AS1|lncRNA|chr8:1620373:1620535:-	0	-
#Partially deleted in new
chr8	1621135	1622417	ENSG00000253267.5|DLGAP2-AS1|lncRNA|chr8:1621135:1622417:-	0	-
#Deleted in new
chr8	16214812	16214894	ENSG00000038945.14|MSR1|pc|chr8:16214812:16214894:-	0	-
#Deleted in new
chr8	16215001	16215074	ENSG00000038945.14|MSR1|pc|chr8:16215001:16215074:-	0	-
#Deleted in new
chr8	16250397	16250492	ENSG00000038945.14|MSR1|pc|chr8:16250397:16250492:-	0	-
#Deleted in new
chr8	16256243	16256410	ENSG00000038945.14|MSR1|pc|chr8:16256243:16256410:-	0	-
#Deleted in new
chr8	16256330	16256410	ENSG00000038945.14|MSR1|pc|chr8:16256330:16256410:-	0	-
#Deleted in new
chr8	16265172	16265331	ENSG00000038945.14|MSR1|pc|chr8:16265172:16265331:-	0	-
#Partially deleted in new
chr8	16467751	16468036	ENSG00000038945.14|MSR1|pc|chr8:16467751:16468036:-	0	-
#Partially deleted in new
chr8	16467763	16468036	ENSG00000038945.14|MSR1|pc|chr8:16467763:16468036:-	0	-
#Deleted in new
chr8	16495792	16495880	ENSG00000038945.14|MSR1|pc|chr8:16495792:16495880:-	0	-
#Deleted in new
chr8	16495792	16495946	ENSG00000038945.14|MSR1|pc|chr8:16495792:16495946:-	0	-
#Deleted in new
chr8	16497873	16497984	ENSG00000038945.14|MSR1|pc|chr8:16497873:16497984:-	0	-
#Deleted in new
chr8	16565534	16565587	ENSG00000038945.14|MSR1|pc|chr8:16565534:16565587:-	0	-
#Deleted in new
chr8	16661939	16662052	ENSG00000253184.1|AC011586.1|lncRNA|chr8:16661939:16662052:+	0	+
#Deleted in new
chr8	16664822	16664879	ENSG00000253184.1|AC011586.1|lncRNA|chr8:16664822:16664879:+	0	+
#Deleted in new
chr8	16676904	16677074	ENSG00000253496.2|AC068992.1|lncRNA|chr8:16676904:16677074:-	0	-
#Deleted in new
chr8	16690796	16690962	ENSG00000253496.2|AC068992.1|lncRNA|chr8:16690796:16690962:-	0	-
#Deleted in new
chr8	16783187	16783282	ENSG00000253496.2|AC068992.1|lncRNA|chr8:16783187:16783282:-	0	-
#Deleted in new
chr8	1678981	1679044	ENSG00000198010.12|DLGAP2|pc|chr8:1678981:1679044:+	0	+
#Deleted in new
chr8	1680547	1680686	ENSG00000198010.12|DLGAP2|pc|chr8:1680547:1680686:+	0	+
#Deleted in new
chr8	1680547	1680840	ENSG00000198010.12|DLGAP2|pc|chr8:1680547:1680840:+	0	+
#Deleted in new
chr8	16844104	16844255	ENSG00000253496.2|AC068992.1|lncRNA|chr8:16844104:16844255:-	0	-
#Deleted in new
chr8	1688252	1688429	ENSG00000198010.12|DLGAP2|pc|chr8:1688252:1688429:+	0	+
#Partially deleted in new
chr8	17131180	17133069	ENSG00000249258.2|AC079193.2|lncRNA|chr8:17131180:17133069:+	0	+
#Partially deleted in new
chr8	17224963	17230848	ENSG00000198791.11|CNOT7|pc|chr8:17224963:17230848:-	0	-
#Deleted in new
chr8	17248309	17248417	ENSG00000155975.9|VPS37A|pc|chr8:17248309:17248417:+	0	+
#Deleted in new
chr8	17271992	17272063	ENSG00000155975.9|VPS37A|pc|chr8:17271992:17272063:+	0	+
#Deleted in new
chr8	17326316	17326513	ENSG00000003987.13|MTMR7|pc|chr8:17326316:17326513:-	0	-
#Partially deleted in new
chr8	17338729	17338991	ENSG00000003987.13|MTMR7|pc|chr8:17338729:17338991:-	0	-
#Deleted in new
chr8	17502256	17502302	ENSG00000003989.17|SLC7A2|pc|chr8:17502256:17502302:+	0	+
#Deleted in new
chr8	17510612	17511300	ENSG00000279932.1|AP006248.4|lncRNA|chr8:17510612:17511300:+	0	+
#Deleted in new
chr8	1755777	1756082	ENSG00000182372.9|CLN8|pc|chr8:1755777:1756082:+	0	+
#Deleted in new
chr8	1755780	1756082	ENSG00000182372.9|CLN8|pc|chr8:1755780:1756082:+	0	+
#Deleted in new
chr8	1755787	1756082	ENSG00000182372.9|CLN8|pc|chr8:1755787:1756082:+	0	+
#Deleted in new
chr8	17576432	17576756	ENSG00000104213.12|PDGFRL|pc|chr8:17576432:17576756:+	0	+
#Deleted in new
chr8	17576432	17576760	ENSG00000104213.12|PDGFRL|pc|chr8:17576432:17576760:+	0	+
#Deleted in new
chr8	1758207	1760447	ENSG00000282021.1|AC100810.3|lncRNA|chr8:1758207:1760447:-	0	-
#Deleted in new
chr8	1758248	1758306	ENSG00000182372.9|CLN8|pc|chr8:1758248:1758306:+	0	+
#Deleted in new
chr8	1759296	1759501	ENSG00000182372.9|CLN8|pc|chr8:1759296:1759501:+	0	+
#Deleted in new
chr8	1759296	1759511	ENSG00000182372.9|CLN8|pc|chr8:1759296:1759511:+	0	+
#Deleted in new
chr8	1761989	1762928	ENSG00000253982.1|AC100810.1|lncRNA|chr8:1761989:1762928:-	0	-
#Deleted in new
chr8	1762080	1762928	ENSG00000253982.1|AC100810.1|lncRNA|chr8:1762080:1762928:-	0	-
#Deleted in new
chr8	1762624	1762928	ENSG00000253982.1|AC100810.1|lncRNA|chr8:1762624:1762928:-	0	-
#Deleted in new
chr8	1763022	1763297	ENSG00000253982.1|AC100810.1|lncRNA|chr8:1763022:1763297:-	0	-
#Deleted in new
chr8	1763703	1763885	ENSG00000182372.9|CLN8|pc|chr8:1763703:1763885:+	0	+
#Deleted in new
chr8	1763759	1763811	ENSG00000182372.9|CLN8|pc|chr8:1763759:1763811:+	0	+
#Deleted in new
chr8	1763776	1763941	ENSG00000182372.9|CLN8|pc|chr8:1763776:1763941:+	0	+
#Deleted in new
chr8	1763799	1763885	ENSG00000182372.9|CLN8|pc|chr8:1763799:1763885:+	0	+
#Deleted in new
chr8	1763799	1763925	ENSG00000182372.9|CLN8|pc|chr8:1763799:1763925:+	0	+
#Deleted in new
chr8	1763814	1763885	ENSG00000182372.9|CLN8|pc|chr8:1763814:1763885:+	0	+
#Deleted in new
chr8	1763831	1763885	ENSG00000182372.9|CLN8|pc|chr8:1763831:1763885:+	0	+
#Deleted in new
chr8	1763887	1763941	ENSG00000283239.1|KBTBD11-OT1|pc|chr8:1763887:1763941:+	0	+
#Deleted in new
chr8	1764300	1764339	ENSG00000253982.1|AC100810.1|lncRNA|chr8:1764300:1764339:-	0	-
#Deleted in new
chr8	1764433	1764502	ENSG00000253982.1|AC100810.1|lncRNA|chr8:1764433:1764502:-	0	-
#Deleted in new
chr8	1764651	1764702	ENSG00000182372.9|CLN8|pc|chr8:1764651:1764702:+	0	+
#Deleted in new
chr8	1765067	1765223	ENSG00000182372.9|CLN8|pc|chr8:1765067:1765223:+	0	+
#Deleted in new
chr8	17651602	17651764	ENSG00000129422.14|MTUS1|pc|chr8:17651602:17651764:-	0	-
#Deleted in new
chr8	17691304	17691364	ENSG00000129422.14|MTUS1|pc|chr8:17691304:17691364:-	0	-
#Partially deleted in new
chr8	17703987	17704182	ENSG00000253168.1|AC124069.1|lncRNA|chr8:17703987:17704182:+	0	+
#Deleted in new
chr8	17708766	17708968	ENSG00000129422.14|MTUS1|pc|chr8:17708766:17708968:-	0	-
#Deleted in new
chr8	17716472	17716590	ENSG00000129422.14|MTUS1|pc|chr8:17716472:17716590:-	0	-
#Deleted in new
chr8	1772923	1772985	ENSG00000182372.9|CLN8|pc|chr8:1772923:1772985:+	0	+
#Deleted in new
chr8	1773583	1773901	ENSG00000182372.9|CLN8|pc|chr8:1773583:1773901:+	0	+
#Deleted in new
chr8	17758139	17758204	ENSG00000129422.14|MTUS1|pc|chr8:17758139:17758204:-	0	-
#Deleted in new
chr8	17770428	17770581	ENSG00000129422.14|MTUS1|pc|chr8:17770428:17770581:-	0	-
#Deleted in new
chr8	17780876	17780962	ENSG00000129422.14|MTUS1|pc|chr8:17780876:17780962:-	0	-
#Partially deleted in new
chr8	1780249	1786570	ENSG00000182372.9|CLN8|pc|chr8:1780249:1786570:+	0	+
#Partially deleted in new
chr8	17809210	17809687	ENSG00000253671.1|AC027117.1|lncRNA|chr8:17809210:17809687:+	0	+
#Deleted in new
chr8	17809596	17809687	ENSG00000253671.1|AC027117.1|lncRNA|chr8:17809596:17809687:+	0	+
#Partially deleted in new
chr8	1782355	1782681	ENSG00000182372.9|CLN8|pc|chr8:1782355:1782681:+	0	+
#Deleted in new
chr8	17860957	17861069	ENSG00000253944.1|AC027117.2|lncRNA|chr8:17860957:17861069:+	0	+
#Partially deleted in new
chr8	17882280	17882661	ENSG00000253215.1|AC087273.1|lncRNA|chr8:17882280:17882661:+	0	+
#Deleted in new
chr8	17891265	17891807	ENSG00000104760.16|FGL1|pc|chr8:17891265:17891807:-	0	-
#Deleted in new
chr8	17891680	17891807	ENSG00000104760.16|FGL1|pc|chr8:17891680:17891807:-	0	-
#Deleted in new
chr8	17891680	17891809	ENSG00000104760.16|FGL1|pc|chr8:17891680:17891809:-	0	-
#Deleted in new
chr8	17891680	17891829	ENSG00000104760.16|FGL1|pc|chr8:17891680:17891829:-	0	-
#Deleted in new
chr8	17905755	17905855	ENSG00000254054.2|AC087273.2|lncRNA|chr8:17905755:17905855:+	0	+
#Deleted in new
chr8	17907192	17907394	ENSG00000254054.2|AC087273.2|lncRNA|chr8:17907192:17907394:+	0	+
#Deleted in new
chr8	17907555	17907887	ENSG00000254054.2|AC087273.2|lncRNA|chr8:17907555:17907887:+	0	+
#Deleted in new
chr8	17909884	17910365	ENSG00000104760.16|FGL1|pc|chr8:17909884:17910365:-	0	-
#Deleted in new
chr8	17982539	17982637	ENSG00000078674.17|PCM1|pc|chr8:17982539:17982637:+	0	+
#Deleted in new
chr8	1799994	1800025	ENSG00000182372.9|CLN8|pc|chr8:1799994:1800025:+	0	+
#Deleted in new
chr8	1800673	1801711	ENSG00000182372.9|CLN8|pc|chr8:1800673:1801711:+	0	+
#Deleted in new
chr8	18015700	18015795	ENSG00000078674.17|PCM1|pc|chr8:18015700:18015795:+	0	+
#Partially deleted in new
chr8	18024950	18025453	ENSG00000078674.17|PCM1|pc|chr8:18024950:18025453:+	0	+
#Partially deleted in new
chr8	18062278	18063143	ENSG00000104763.18|ASAH1|pc|chr8:18062278:18063143:-	0	-
#Partially deleted in new
chr8	18063184	18063624	ENSG00000104763.18|ASAH1|pc|chr8:18063184:18063624:-	0	-
#Deleted in new
chr8	18064724	18064768	ENSG00000104763.18|ASAH1|pc|chr8:18064724:18064768:-	0	-
#Partially deleted in new
chr8	18085026	18085485	ENSG00000245281.6|AC124242.1|lncRNA|chr8:18085026:18085485:+	0	+
#Partially deleted in new
chr8	18085048	18085485	ENSG00000245281.6|AC124242.1|lncRNA|chr8:18085048:18085485:+	0	+
#Deleted in new
chr8	18085241	18085485	ENSG00000245281.6|AC124242.1|lncRNA|chr8:18085241:18085485:+	0	+
#Deleted in new
chr8	18087999	18088041	ENSG00000245281.6|AC124242.1|lncRNA|chr8:18087999:18088041:+	0	+
#Deleted in new
chr8	18087999	18088211	ENSG00000245281.6|AC124242.1|lncRNA|chr8:18087999:18088211:+	0	+
#Deleted in new
chr8	18095825	18095907	ENSG00000245281.6|AC124242.1|lncRNA|chr8:18095825:18095907:+	0	+
#Partially deleted in new
chr8	18095825	18096394	ENSG00000245281.6|AC124242.1|lncRNA|chr8:18095825:18096394:+	0	+
#Deleted in new
chr8	18170476	18170507	ENSG00000171428.13|NAT1|pc|chr8:18170476:18170507:+	0	+
#Deleted in new
chr8	18170678	18170739	ENSG00000171428.13|NAT1|pc|chr8:18170678:18170739:+	0	+
#Deleted in new
chr8	18216876	18216994	ENSG00000171428.13|NAT1|pc|chr8:18216876:18216994:+	0	+
#Deleted in new
chr8	18216893	18216994	ENSG00000171428.13|NAT1|pc|chr8:18216893:18216994:+	0	+
#Duplicated in new
chr8	18222041	18223688	ENSG00000171428.13|NAT1|pc|chr8:18222041:18223688:+	0	+
#Duplicated in new
chr8	18222041	18223689	ENSG00000171428.13|NAT1|pc|chr8:18222041:18223689:+	0	+
#Deleted in new
chr8	18391286	18391345	ENSG00000156006.4|NAT2|pc|chr8:18391286:18391345:+	0	+
#Deleted in new
chr8	1858754	1858816	ENSG00000104728.15|ARHGEF10|pc|chr8:1858754:1858816:+	0	+
#Partially deleted in new
chr8	1876050	1876734	ENSG00000104728.15|ARHGEF10|pc|chr8:1876050:1876734:+	0	+
#Deleted in new
chr8	18802275	18802352	ENSG00000156011.16|PSD3|pc|chr8:18802275:18802352:-	0	-
#Deleted in new
chr8	18802330	18802352	ENSG00000156011.16|PSD3|pc|chr8:18802330:18802352:-	0	-
#Deleted in new
chr8	18803161	18803279	ENSG00000156011.16|PSD3|pc|chr8:18803161:18803279:-	0	-
#Deleted in new
chr8	18864680	18865247	ENSG00000278886.1|AC087821.1|lncRNA|chr8:18864680:18865247:-	0	-
#Deleted in new
chr8	18989278	18989412	ENSG00000253335.1|AC009884.1|lncRNA|chr8:18989278:18989412:+	0	+
#Deleted in new
chr8	1904234	1904311	ENSG00000104728.15|ARHGEF10|pc|chr8:1904234:1904311:+	0	+
#Deleted in new
chr8	19086894	19086921	ENSG00000253557.5|AC100849.1|lncRNA|chr8:19086894:19086921:-	0	-
#Partially deleted in new
chr8	19114884	19115024	ENSG00000254242.1|AC100849.2|lncRNA|chr8:19114884:19115024:+	0	+
#Deleted in new
chr8	19246349	19246450	ENSG00000254201.1|AC068880.3|lncRNA|chr8:19246349:19246450:+	0	+
#Deleted in new
chr8	19246708	19246825	ENSG00000253557.5|AC100849.1|lncRNA|chr8:19246708:19246825:-	0	-
#Deleted in new
chr8	19249162	19249240	ENSG00000254201.1|AC068880.3|lncRNA|chr8:19249162:19249240:+	0	+
#Deleted in new
chr8	19254240	19254317	ENSG00000253280.1|AC068880.2|lncRNA|chr8:19254240:19254317:-	0	-
#Deleted in new
chr8	19255752	19255849	ENSG00000253280.1|AC068880.2|lncRNA|chr8:19255752:19255849:-	0	-
#Deleted in new
chr8	19256177	19256227	ENSG00000253280.1|AC068880.2|lncRNA|chr8:19256177:19256227:-	0	-
#Deleted in new
chr8	19257196	19257334	ENSG00000253280.1|AC068880.2|lncRNA|chr8:19257196:19257334:-	0	-
#Deleted in new
chr8	19259305	19259469	ENSG00000253557.5|AC100849.1|lncRNA|chr8:19259305:19259469:-	0	-
#Deleted in new
chr8	1943593	1943907	ENSG00000104728.15|ARHGEF10|pc|chr8:1943593:1943907:+	0	+
#Deleted in new
chr8	1943594	1943712	ENSG00000104728.15|ARHGEF10|pc|chr8:1943594:1943712:+	0	+
#Deleted in new
chr8	1943653	1943712	ENSG00000104728.15|ARHGEF10|pc|chr8:1943653:1943712:+	0	+
#Partially deleted in new
chr8	19587873	19588023	ENSG00000147408.14|CSGALNACT1|pc|chr8:19587873:19588023:-	0	-
#Deleted in new
chr8	19587928	19588023	ENSG00000147408.14|CSGALNACT1|pc|chr8:19587928:19588023:-	0	-
#Partially deleted in new
chr8	19688723	19688934	ENSG00000253270.1|AC090541.1|lncRNA|chr8:19688723:19688934:+	0	+
#Deleted in new
chr8	1971396	1971518	ENSG00000253696.2|KBTBD11-OT1|lncRNA|chr8:1971396:1971518:+	0	+
#Deleted in new
chr8	1971924	1972037	ENSG00000253696.2|KBTBD11-OT1|lncRNA|chr8:1971924:1972037:+	0	+
#Deleted in new
chr8	1972569	1972663	ENSG00000253764.1|AC019257.1|lncRNA|chr8:1972569:1972663:-	0	-
#Deleted in new
chr8	19826425	19826488	ENSG00000104613.11|INTS10|pc|chr8:19826425:19826488:+	0	+
#Deleted in new
chr8	19901716	19901791	ENSG00000175445.14|LPL|pc|chr8:19901716:19901791:+	0	+
#Deleted in new
chr8	20079304	20079522	ENSG00000253775.1|AC100802.1|lncRNA|chr8:20079304:20079522:+	0	+
#Deleted in new
chr8	20203958	20204083	ENSG00000147416.10|ATP6V1B2|pc|chr8:20203958:20204083:+	0	+
#Deleted in new
chr8	20225281	20225406	ENSG00000147416.10|ATP6V1B2|pc|chr8:20225281:20225406:+	0	+
#Deleted in new
chr8	20225688	20225819	ENSG00000147416.10|ATP6V1B2|pc|chr8:20225688:20225819:+	0	+
#Deleted in new
chr8	20226438	20226819	ENSG00000147416.10|ATP6V1B2|pc|chr8:20226438:20226819:+	0	+
#Deleted in new
chr8	2033507	2033798	ENSG00000253805.1|AC245164.1|lncRNA|chr8:2033507:2033798:+	0	+
#Deleted in new
chr8	20358257	20358435	ENSG00000253164.5|AC023403.1|lncRNA|chr8:20358257:20358435:+	0	+
#Deleted in new
chr8	20359725	20359780	ENSG00000253164.5|AC023403.1|lncRNA|chr8:20359725:20359780:+	0	+
#Deleted in new
chr8	20363603	20363830	ENSG00000253164.5|AC023403.1|lncRNA|chr8:20363603:20363830:+	0	+
#Deleted in new
chr8	20370449	20370475	ENSG00000253164.5|AC023403.1|lncRNA|chr8:20370449:20370475:+	0	+
#Deleted in new
chr8	20370449	20370542	ENSG00000253164.5|AC023403.1|lncRNA|chr8:20370449:20370542:+	0	+
#Deleted in new
chr8	20372525	20372769	ENSG00000253164.5|AC023403.1|lncRNA|chr8:20372525:20372769:+	0	+
#Deleted in new
chr8	20655690	20656259	ENSG00000253300.1|AC018541.1|lncRNA|chr8:20655690:20656259:-	0	-
#Deleted in new
chr8	2081787	2082182	ENSG00000036448.9|MYOM2|pc|chr8:2081787:2082182:+	0	+
#Deleted in new
chr8	20948698	20948793	ENSG00000254260.1|AC015468.4|lncRNA|chr8:20948698:20948793:+	0	+
#Deleted in new
chr8	20950086	20950175	ENSG00000254260.1|AC015468.4|lncRNA|chr8:20950086:20950175:+	0	+
#Partially deleted in new
chr8	20953126	20953496	ENSG00000253147.5|AC015468.1|lncRNA|chr8:20953126:20953496:+	0	+
#Partially deleted in new
chr8	20954011	20954075	ENSG00000254026.1|AC015468.2|lncRNA|chr8:20954011:20954075:+	0	+
#Deleted in new
chr8	20955684	20955834	ENSG00000253147.5|AC015468.1|lncRNA|chr8:20955684:20955834:+	0	+
#Deleted in new
chr8	20955873	20956120	ENSG00000254026.1|AC015468.2|lncRNA|chr8:20955873:20956120:+	0	+
#Deleted in new
chr8	20962780	20962895	ENSG00000253147.5|AC015468.1|lncRNA|chr8:20962780:20962895:+	0	+
#Deleted in new
chr8	20962780	20962901	ENSG00000253147.5|AC015468.1|lncRNA|chr8:20962780:20962901:+	0	+
#Deleted in new
chr8	20962780	20962901	ENSG00000254026.1|AC015468.2|lncRNA|chr8:20962780:20962901:+	0	+
#Deleted in new
chr8	2098044	2098111	ENSG00000036448.9|MYOM2|pc|chr8:2098044:2098111:+	0	+
#Partially deleted in new
chr8	20983456	20984106	ENSG00000253199.1|LINC02153|lncRNA|chr8:20983456:20984106:+	0	+
#Deleted in new
chr8	20986410	20986486	ENSG00000253199.1|LINC02153|lncRNA|chr8:20986410:20986486:+	0	+
#Deleted in new
chr8	20994779	20994938	ENSG00000253199.1|LINC02153|lncRNA|chr8:20994779:20994938:+	0	+
#Deleted in new
chr8	20995028	20995119	ENSG00000253199.1|LINC02153|lncRNA|chr8:20995028:20995119:+	0	+
#Deleted in new
chr8	2100443	2100499	ENSG00000036448.9|MYOM2|pc|chr8:2100443:2100499:+	0	+
#Deleted in new
chr8	21023295	21023576	ENSG00000254040.1|AC103719.1|lncRNA|chr8:21023295:21023576:+	0	+
#Deleted in new
chr8	21027208	21027297	ENSG00000254040.1|AC103719.1|lncRNA|chr8:21027208:21027297:+	0	+
#Deleted in new
chr8	21129989	21130100	ENSG00000280215.1|AC021613.1|lncRNA|chr8:21129989:21130100:-	0	-
#Deleted in new
chr8	2118864	2119211	ENSG00000036448.9|MYOM2|pc|chr8:2118864:2119211:+	0	+
#Deleted in new
chr8	2119257	2119451	ENSG00000036448.9|MYOM2|pc|chr8:2119257:2119451:+	0	+
#Deleted in new
chr8	2127734	2127881	ENSG00000036448.9|MYOM2|pc|chr8:2127734:2127881:+	0	+
#Deleted in new
chr8	2127796	2127881	ENSG00000036448.9|MYOM2|pc|chr8:2127796:2127881:+	0	+
#Deleted in new
chr8	2165152	2165552	ENSG00000036448.9|MYOM2|pc|chr8:2165152:2165552:+	0	+
#Deleted in new
chr8	21780861	21780954	ENSG00000168546.10|GFRA2|pc|chr8:21780861:21780954:-	0	-
#Partially deleted in new
chr8	21969482	21969896	ENSG00000130227.16|XPO7|pc|chr8:21969482:21969896:+	0	+
#Deleted in new
chr8	22024124	22024257	ENSG00000158806.13|NPM2|pc|chr8:22024124:22024257:+	0	+
#Deleted in new
chr8	22024136	22024257	ENSG00000158806.13|NPM2|pc|chr8:22024136:22024257:+	0	+
#Partially deleted in new
chr8	22096336	22097034	ENSG00000158863.21|FAM160B2|pc|chr8:22096336:22097034:+	0	+
#Deleted in new
chr8	22254575	22254906	ENSG00000254064.1|AC105206.2|lncRNA|chr8:22254575:22254906:-	0	-
#Deleted in new
chr8	22398227	22398311	ENSG00000104635.13|SLC39A14|pc|chr8:22398227:22398311:+	0	+
#Deleted in new
chr8	22433890	22434129	ENSG00000104635.13|SLC39A14|pc|chr8:22433890:22434129:+	0	+
#Deleted in new
chr8	22523642	22523749	ENSG00000120910.14|PPP3CC|pc|chr8:22523642:22523749:+	0	+
#Partially deleted in new
chr8	22588201	22589374	ENSG00000120913.23|PDLIM2|pc|chr8:22588201:22589374:+	0	+
#Deleted in new
chr8	22644888	22644896	ENSG00000147439.12|BIN3|pc|chr8:22644888:22644896:-	0	-
#Deleted in new
chr8	22747502	22747570	ENSG00000253125.1|AC055854.1|lncRNA|chr8:22747502:22747570:+	0	+
#Deleted in new
chr8	22747525	22747570	ENSG00000253125.1|AC055854.1|lncRNA|chr8:22747525:22747570:+	0	+
#Deleted in new
chr8	22879290	22879407	ENSG00000248738.6|AC037441.1|lncRNA|chr8:22879290:22879407:+	0	+
#Deleted in new
chr8	22880510	22880588	ENSG00000248738.6|AC037441.1|lncRNA|chr8:22880510:22880588:+	0	+
#Deleted in new
chr8	22887675	22888022	ENSG00000248738.6|AC037441.1|lncRNA|chr8:22887675:22888022:+	0	+
#Deleted in new
chr8	22984595	22984918	ENSG00000245025.2|AC107959.1|lncRNA|chr8:22984595:22984918:-	0	-
#Partially deleted in new
chr8	23020132	23022984	ENSG00000120889.12|TNFRSF10B|pc|chr8:23020132:23022984:-	0	-
#Deleted in new
chr8	23027132	23027288	ENSG00000120889.12|TNFRSF10B|pc|chr8:23027132:23027288:-	0	-
#Deleted in new
chr8	23027132	23027634	ENSG00000120889.12|TNFRSF10B|pc|chr8:23027132:23027634:-	0	-
#Deleted in new
chr8	23027721	23027753	ENSG00000120889.12|TNFRSF10B|pc|chr8:23027721:23027753:-	0	-
#Deleted in new
chr8	23027721	23027968	ENSG00000120889.12|TNFRSF10B|pc|chr8:23027721:23027968:-	0	-
#Deleted in new
chr8	23030758	23030872	ENSG00000120889.12|TNFRSF10B|pc|chr8:23030758:23030872:-	0	-
#Deleted in new
chr8	23042903	23043243	ENSG00000120889.12|TNFRSF10B|pc|chr8:23042903:23043243:-	0	-
#Deleted in new
chr8	23043137	23043243	ENSG00000120889.12|TNFRSF10B|pc|chr8:23043137:23043243:-	0	-
#Deleted in new
chr8	23049776	23049927	ENSG00000120889.12|TNFRSF10B|pc|chr8:23049776:23049927:-	0	-
#Deleted in new
chr8	23068228	23068420	ENSG00000246130.1|AC107959.2|lncRNA|chr8:23068228:23068420:+	0	+
#Deleted in new
chr8	23068750	23069021	ENSG00000120889.12|TNFRSF10B|pc|chr8:23068750:23069021:-	0	-
#Deleted in new
chr8	23068750	23069022	ENSG00000120889.12|TNFRSF10B|pc|chr8:23068750:23069022:-	0	-
#Deleted in new
chr8	23068750	23069031	ENSG00000120889.12|TNFRSF10B|pc|chr8:23068750:23069031:-	0	-
#Deleted in new
chr8	23068750	23069179	ENSG00000120889.12|TNFRSF10B|pc|chr8:23068750:23069179:-	0	-
#Deleted in new
chr8	23071376	23071807	ENSG00000253616.5|AC107959.3|lncRNA|chr8:23071376:23071807:-	0	-
#Deleted in new
chr8	23072028	23072425	ENSG00000253616.5|AC107959.3|lncRNA|chr8:23072028:23072425:-	0	-
#Deleted in new
chr8	23074435	23074488	ENSG00000253616.5|AC107959.3|lncRNA|chr8:23074435:23074488:-	0	-
#Partially deleted in new
chr8	23081247	23083619	ENSG00000246130.1|AC107959.2|lncRNA|chr8:23081247:23083619:+	0	+
#Deleted in new
chr8	23090147	23090288	ENSG00000173535.13|TNFRSF10C|pc|chr8:23090147:23090288:+	0	+
#Deleted in new
chr8	23100636	23100684	ENSG00000173535.13|TNFRSF10C|pc|chr8:23100636:23100684:+	0	+
#Deleted in new
chr8	23102589	23103181	ENSG00000173535.13|TNFRSF10C|pc|chr8:23102589:23103181:+	0	+
#Deleted in new
chr8	23102696	23103558	ENSG00000173535.13|TNFRSF10C|pc|chr8:23102696:23103558:+	0	+
#Deleted in new
chr8	23102920	23103181	ENSG00000173535.13|TNFRSF10C|pc|chr8:23102920:23103181:+	0	+
#Deleted in new
chr8	23111719	23111825	ENSG00000173535.13|TNFRSF10C|pc|chr8:23111719:23111825:+	0	+
#Partially deleted in new
chr8	23116640	23117050	ENSG00000173535.13|TNFRSF10C|pc|chr8:23116640:23117050:+	0	+
#Partially deleted in new
chr8	23116640	23117437	ENSG00000173535.13|TNFRSF10C|pc|chr8:23116640:23117437:+	0	+
#Split in new
chr8	23135587	23138003	ENSG00000173530.5|TNFRSF10D|pc|chr8:23135587:23138003:-	0	-
#Deleted in new
chr8	23144449	23144635	ENSG00000173530.5|TNFRSF10D|pc|chr8:23144449:23144635:-	0	-
#Partially deleted in new
chr8	23145667	23145921	ENSG00000173530.5|TNFRSF10D|pc|chr8:23145667:23145921:-	0	-
#Deleted in new
chr8	23163785	23164030	ENSG00000173530.5|TNFRSF10D|pc|chr8:23163785:23164030:-	0	-
#Deleted in new
chr8	23189278	23189451	ENSG00000253930.1|TNFRSF10A-AS1|lncRNA|chr8:23189278:23189451:+	0	+
#Deleted in new
chr8	23190211	23190675	ENSG00000253930.1|TNFRSF10A-AS1|lncRNA|chr8:23190211:23190675:+	0	+
#Partially deleted in new
chr8	23190451	23192013	ENSG00000104689.9|TNFRSF10A|pc|chr8:23190451:23192013:-	0	-
#Deleted in new
chr8	232136	232267	ENSG00000172748.13|ZNF596|pc|chr8:232136:232267:+	0	+
#Deleted in new
chr8	232183	232415	ENSG00000172748.13|ZNF596|pc|chr8:232183:232415:+	0	+
#Deleted in new
chr8	232199	232415	ENSG00000172748.13|ZNF596|pc|chr8:232199:232415:+	0	+
#Deleted in new
chr8	232216	232267	ENSG00000172748.13|ZNF596|pc|chr8:232216:232267:+	0	+
#Deleted in new
chr8	232237	232415	ENSG00000172748.13|ZNF596|pc|chr8:232237:232415:+	0	+
#Deleted in new
chr8	23224432	23224600	ENSG00000104689.9|TNFRSF10A|pc|chr8:23224432:23224600:-	0	-
#Deleted in new
chr8	23224470	23224891	ENSG00000246582.2|AC100861.1|lncRNA|chr8:23224470:23224891:+	0	+
#Deleted in new
chr8	23224755	23225126	ENSG00000104689.9|TNFRSF10A|pc|chr8:23224755:23225126:-	0	-
#Deleted in new
chr8	23225030	23225061	ENSG00000104689.9|TNFRSF10A|pc|chr8:23225030:23225061:-	0	-
#Deleted in new
chr8	23225220	23226123	ENSG00000246582.2|AC100861.1|lncRNA|chr8:23225220:23226123:+	0	+
#Deleted in new
chr8	23225232	23225444	ENSG00000250714.3|AC100861.2|lncRNA|chr8:23225232:23225444:-	0	-
#Deleted in new
chr8	23225633	23226123	ENSG00000246582.2|AC100861.1|lncRNA|chr8:23225633:23226123:+	0	+
#Deleted in new
chr8	23225804	23225882	ENSG00000246582.2|AC100861.1|lncRNA|chr8:23225804:23225882:+	0	+
#Deleted in new
chr8	23228065	23228153	ENSG00000246582.2|AC100861.1|lncRNA|chr8:23228065:23228153:+	0	+
#Deleted in new
chr8	23228065	23228207	ENSG00000246582.2|AC100861.1|lncRNA|chr8:23228065:23228207:+	0	+
#Deleted in new
chr8	23229947	23230926	ENSG00000246582.2|AC100861.1|lncRNA|chr8:23229947:23230926:+	0	+
#Deleted in new
chr8	23230002	23230915	ENSG00000250714.3|AC100861.2|lncRNA|chr8:23230002:23230915:-	0	-
#Deleted in new
chr8	232383	232624	ENSG00000172748.13|ZNF596|pc|chr8:232383:232624:+	0	+
#Deleted in new
chr8	232396	232694	ENSG00000172748.13|ZNF596|pc|chr8:232396:232694:+	0	+
#Deleted in new
chr8	232421	232694	ENSG00000172748.13|ZNF596|pc|chr8:232421:232694:+	0	+
#Deleted in new
chr8	23243636	23243844	ENSG00000147457.13|CHMP7|pc|chr8:23243636:23243844:+	0	+
#Deleted in new
chr8	232441	232624	ENSG00000172748.13|ZNF596|pc|chr8:232441:232624:+	0	+
#Deleted in new
chr8	232455	232624	ENSG00000172748.13|ZNF596|pc|chr8:232455:232624:+	0	+
#Deleted in new
chr8	23252367	23252461	ENSG00000147457.13|CHMP7|pc|chr8:23252367:23252461:+	0	+
#Deleted in new
chr8	232585	233049	ENSG00000172748.13|ZNF596|pc|chr8:232585:233049:+	0	+
#Deleted in new
chr8	23270119	23270243	ENSG00000104679.10|R3HCC1|pc|chr8:23270119:23270243:+	0	+
#Deleted in new
chr8	233118	233692	ENSG00000272812.1|AC004908.2|lncRNA|chr8:233118:233692:+	0	+
#Deleted in new
chr8	23331436	23332008	ENSG00000134013.15|LOXL2|pc|chr8:23331436:23332008:-	0	-
#Deleted in new
chr8	23370642	23370762	ENSG00000134013.15|LOXL2|pc|chr8:23370642:23370762:-	0	-
#Deleted in new
chr8	23371076	23371126	ENSG00000134013.15|LOXL2|pc|chr8:23371076:23371126:-	0	-
#Deleted in new
chr8	23382390	23382513	ENSG00000134013.15|LOXL2|pc|chr8:23382390:23382513:-	0	-
#Deleted in new
chr8	23385782	23386045	ENSG00000197217.12|ENTPD4|pc|chr8:23385782:23386045:-	0	-
#Deleted in new
chr8	23425050	23425291	ENSG00000134013.15|LOXL2|pc|chr8:23425050:23425291:-	0	-
#Deleted in new
chr8	23425050	23425301	ENSG00000134013.15|LOXL2|pc|chr8:23425050:23425301:-	0	-
#Deleted in new
chr8	23425050	23425328	ENSG00000134013.15|LOXL2|pc|chr8:23425050:23425328:-	0	-
#Deleted in new
chr8	234346	234887	ENSG00000272240.1|AC004908.1|lncRNA|chr8:234346:234887:-	0	-
#Deleted in new
chr8	23484832	23484971	ENSG00000253390.1|AC104561.1|lncRNA|chr8:23484832:23484971:+	0	+
#Deleted in new
chr8	23541469	23541856	ENSG00000147454.13|SLC25A37|pc|chr8:23541469:23541856:+	0	+
#Deleted in new
chr8	23541561	23541856	ENSG00000147454.13|SLC25A37|pc|chr8:23541561:23541856:+	0	+
#Deleted in new
chr8	23541686	23541839	ENSG00000147454.13|SLC25A37|pc|chr8:23541686:23541839:+	0	+
#Deleted in new
chr8	23543087	23543211	ENSG00000147454.13|SLC25A37|pc|chr8:23543087:23543211:+	0	+
#Deleted in new
chr8	237044	237669	ENSG00000273402.1|AC004908.3|lncRNA|chr8:237044:237669:+	0	+
#Deleted in new
chr8	23707140	23707215	ENSG00000253471.1|AC012574.1|lncRNA|chr8:23707140:23707215:+	0	+
#Deleted in new
chr8	23726330	23726611	ENSG00000254002.1|AC012574.2|lncRNA|chr8:23726330:23726611:-	0	-
#Deleted in new
chr8	23732548	23732660	ENSG00000254002.1|AC012574.2|lncRNA|chr8:23732548:23732660:-	0	-
#Deleted in new
chr8	23742992	23743042	ENSG00000254002.1|AC012574.2|lncRNA|chr8:23742992:23743042:-	0	-
#Deleted in new
chr8	240301	240496	ENSG00000172748.13|ZNF596|pc|chr8:240301:240496:+	0	+
#Deleted in new
chr8	240634	240907	ENSG00000172748.13|ZNF596|pc|chr8:240634:240907:+	0	+
#Deleted in new
chr8	240823	240907	ENSG00000172748.13|ZNF596|pc|chr8:240823:240907:+	0	+
#Deleted in new
chr8	24169956	24170115	ENSG00000253891.1|AC023202.1|lncRNA|chr8:24169956:24170115:-	0	-
#Partially deleted in new
chr8	242886	244701	ENSG00000172748.13|ZNF596|pc|chr8:242886:244701:+	0	+
#Deleted in new
chr8	24300884	24300929	ENSG00000253535.5|AC120193.1|lncRNA|chr8:24300884:24300929:-	0	-
#Deleted in new
chr8	24308640	24308768	ENSG00000042980.12|ADAM28|pc|chr8:24308640:24308768:+	0	+
#Deleted in new
chr8	24322607	24322661	ENSG00000042980.12|ADAM28|pc|chr8:24322607:24322661:+	0	+
#Deleted in new
chr8	24346947	24347032	ENSG00000042980.12|ADAM28|pc|chr8:24346947:24347032:+	0	+
#Deleted in new
chr8	243721	243801	ENSG00000172748.13|ZNF596|pc|chr8:243721:243801:+	0	+
#Deleted in new
chr8	243721	243805	ENSG00000172748.13|ZNF596|pc|chr8:243721:243805:+	0	+
#Deleted in new
chr8	243721	243858	ENSG00000172748.13|ZNF596|pc|chr8:243721:243858:+	0	+
#Deleted in new
chr8	24387160	24387324	ENSG00000253535.5|AC120193.1|lncRNA|chr8:24387160:24387324:-	0	-
#Deleted in new
chr8	24387160	24387341	ENSG00000253535.5|AC120193.1|lncRNA|chr8:24387160:24387341:-	0	-
#Deleted in new
chr8	24387160	24387515	ENSG00000253535.5|AC120193.1|lncRNA|chr8:24387160:24387515:-	0	-
#Deleted in new
chr8	24387750	24387991	ENSG00000253535.5|AC120193.1|lncRNA|chr8:24387750:24387991:-	0	-
#Deleted in new
chr8	24390128	24390218	ENSG00000134028.14|ADAMDEC1|pc|chr8:24390128:24390218:+	0	+
#Deleted in new
chr8	244618	244654	ENSG00000172748.13|ZNF596|pc|chr8:244618:244654:+	0	+
#Deleted in new
chr8	244618	244701	ENSG00000172748.13|ZNF596|pc|chr8:244618:244701:+	0	+
#Deleted in new
chr8	24475903	24475982	ENSG00000069206.15|ADAM7|pc|chr8:24475903:24475982:+	0	+
#Partially deleted in new
chr8	24514574	24514664	ENSG00000253643.5|AC024958.1|lncRNA|chr8:24514574:24514664:-	0	-
#Partially deleted in new
chr8	24514574	24514829	ENSG00000253643.5|AC024958.1|lncRNA|chr8:24514574:24514829:-	0	-
#Deleted in new
chr8	24514785	24514813	ENSG00000253643.5|AC024958.1|lncRNA|chr8:24514785:24514813:-	0	-
#Deleted in new
chr8	24514785	24514828	ENSG00000253643.5|AC024958.1|lncRNA|chr8:24514785:24514828:-	0	-
#Deleted in new
chr8	245153	245159	ENSG00000172748.13|ZNF596|pc|chr8:245153:245159:+	0	+
#Deleted in new
chr8	24884001	24884123	ENSG00000253535.5|AC120193.1|lncRNA|chr8:24884001:24884123:-	0	-
#Deleted in new
chr8	2493875	2494091	ENSG00000253444.1|AC245519.1|lncRNA|chr8:2493875:2494091:-	0	-
#Deleted in new
chr8	2495521	2495628	ENSG00000282686.1|AC245519.2|lncRNA|chr8:2495521:2495628:+	0	+
#Deleted in new
chr8	2496458	2496572	ENSG00000282686.1|AC245519.2|lncRNA|chr8:2496458:2496572:+	0	+
#Deleted in new
chr8	2499174	2499428	ENSG00000282686.1|AC245519.2|lncRNA|chr8:2499174:2499428:+	0	+
#Deleted in new
chr8	25008393	25008587	ENSG00000253832.1|AC107373.1|lncRNA|chr8:25008393:25008587:+	0	+
#Deleted in new
chr8	2517897	2517949	ENSG00000282142.1|AC245187.2|lncRNA|chr8:2517897:2517949:-	0	-
#Deleted in new
chr8	2519643	2519734	ENSG00000253855.1|AC245187.1|lncRNA|chr8:2519643:2519734:+	0	+
#Deleted in new
chr8	2521940	2522182	ENSG00000253855.1|AC245187.1|lncRNA|chr8:2521940:2522182:+	0	+
#Partially deleted in new
chr8	25270789	25271221	ENSG00000147459.17|DOCK5|pc|chr8:25270789:25271221:+	0	+
#Deleted in new
chr8	2528669	2529003	ENSG00000282142.1|AC245187.2|lncRNA|chr8:2528669:2529003:-	0	-
#Partially deleted in new
chr8	25351392	25351826	ENSG00000147459.17|DOCK5|pc|chr8:25351392:25351826:+	0	+
#Deleted in new
chr8	25388808	25388941	ENSG00000147459.17|DOCK5|pc|chr8:25388808:25388941:+	0	+
#Deleted in new
chr8	25426292	25426580	ENSG00000253476.1|AC091185.1|lncRNA|chr8:25426292:25426580:-	0	-
#Deleted in new
chr8	25450378	25450481	ENSG00000104756.15|KCTD9|pc|chr8:25450378:25450481:-	0	-
#Deleted in new
chr8	25450379	25450481	ENSG00000104756.15|KCTD9|pc|chr8:25450379:25450481:-	0	-
#Deleted in new
chr8	25450379	25450611	ENSG00000104756.15|KCTD9|pc|chr8:25450379:25450611:-	0	-
#Deleted in new
chr8	25451468	25451543	ENSG00000104756.15|KCTD9|pc|chr8:25451468:25451543:-	0	-
#Partially deleted in new
chr8	25458996	25459473	ENSG00000184661.13|CDCA2|pc|chr8:25458996:25459473:+	0	+
#Deleted in new
chr8	25459198	25459473	ENSG00000184661.13|CDCA2|pc|chr8:25459198:25459473:+	0	+
#Deleted in new
chr8	25472112	25472184	ENSG00000184661.13|CDCA2|pc|chr8:25472112:25472184:+	0	+
#Deleted in new
chr8	25479691	25479713	ENSG00000184661.13|CDCA2|pc|chr8:25479691:25479713:+	0	+
#Deleted in new
chr8	25776678	25776890	ENSG00000253342.1|AC009623.2|lncRNA|chr8:25776678:25776890:+	0	+
#Deleted in new
chr8	25777203	25777456	ENSG00000253342.1|AC009623.2|lncRNA|chr8:25777203:25777456:+	0	+
#Deleted in new
chr8	25839964	25840135	ENSG00000254178.1|AC090103.1|lncRNA|chr8:25839964:25840135:-	0	-
#Deleted in new
chr8	2589984	2591249	ENSG00000277526.4|AC245123.1|lncRNA|chr8:2589984:2591249:-	0	-
#Deleted in new
chr8	2595564	2595700	ENSG00000277526.4|AC245123.1|lncRNA|chr8:2595564:2595700:-	0	-
#Deleted in new
chr8	2595564	2595703	ENSG00000277526.4|AC245123.1|lncRNA|chr8:2595564:2595703:-	0	-
#Deleted in new
chr8	2596624	2596704	ENSG00000277526.4|AC245123.1|lncRNA|chr8:2596624:2596704:-	0	-
#Deleted in new
chr8	2604780	2604930	ENSG00000277526.4|AC245123.1|lncRNA|chr8:2604780:2604930:-	0	-
#Deleted in new
chr8	261066	261155	ENSG00000172748.13|ZNF596|pc|chr8:261066:261155:+	0	+
#Deleted in new
chr8	2623294	2623365	ENSG00000277526.4|AC245123.1|lncRNA|chr8:2623294:2623365:-	0	-
#Deleted in new
chr8	2623294	2623382	ENSG00000277526.4|AC245123.1|lncRNA|chr8:2623294:2623382:-	0	-
#Deleted in new
chr8	26350598	26350681	ENSG00000221914.9|PPP2R2A|pc|chr8:26350598:26350681:+	0	+
#Deleted in new
chr8	26395616	26395708	ENSG00000104765.15|BNIP3L|pc|chr8:26395616:26395708:+	0	+
#Deleted in new
chr8	26422592	26422849	ENSG00000253430.1|AC011726.2|lncRNA|chr8:26422592:26422849:+	0	+
#Deleted in new
chr8	26423678	26423929	ENSG00000253430.1|AC011726.2|lncRNA|chr8:26423678:26423929:+	0	+
#Deleted in new
chr8	26440490	26440704	ENSG00000254362.1|AC011726.3|lncRNA|chr8:26440490:26440704:+	0	+
#Deleted in new
chr8	26441171	26441251	ENSG00000254362.1|AC011726.3|lncRNA|chr8:26441171:26441251:+	0	+
#Deleted in new
chr8	26442079	26442195	ENSG00000254362.1|AC011726.3|lncRNA|chr8:26442079:26442195:+	0	+
#Deleted in new
chr8	26442437	26442595	ENSG00000254362.1|AC011726.3|lncRNA|chr8:26442437:26442595:+	0	+
#Partially deleted in new
chr8	26619507	26620020	ENSG00000092964.17|DPYSL2|pc|chr8:26619507:26620020:+	0	+
#Deleted in new
chr8	2669780	2670009	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2669780:2670009:-	0	-
#Deleted in new
chr8	2669801	2670009	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2669801:2670009:-	0	-
#Deleted in new
chr8	2669828	2670009	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2669828:2670009:-	0	-
#Deleted in new
chr8	2674729	2674845	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2674729:2674845:-	0	-
#Deleted in new
chr8	26779052	26779430	ENSG00000120907.17|ADRA1A|pc|chr8:26779052:26779430:-	0	-
#Deleted in new
chr8	2678856	2678939	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2678856:2678939:-	0	-
#Deleted in new
chr8	2696553	2696970	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2696553:2696970:-	0	-
#Deleted in new
chr8	2701472	2701894	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2701472:2701894:-	0	-
#Deleted in new
chr8	2705214	2705286	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2705214:2705286:-	0	-
#Partially deleted in new
chr8	27087178	27087783	ENSG00000253903.2|AC090150.2|lncRNA|chr8:27087178:27087783:+	0	+
#Deleted in new
chr8	27184320	27184387	ENSG00000253888.1|AC090150.1|lncRNA|chr8:27184320:27184387:+	0	+
#Deleted in new
chr8	27206454	27206519	ENSG00000253888.1|AC090150.1|lncRNA|chr8:27206454:27206519:+	0	+
#Deleted in new
chr8	27210041	27210494	ENSG00000253888.1|AC090150.1|lncRNA|chr8:27210041:27210494:+	0	+
#Deleted in new
chr8	2727317	2727493	ENSG00000253853.1|AC246817.1|lncRNA|chr8:2727317:2727493:+	0	+
#Deleted in new
chr8	2728329	2728389	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2728329:2728389:-	0	-
#Deleted in new
chr8	2728329	2728417	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2728329:2728417:-	0	-
#Deleted in new
chr8	2728329	2728419	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2728329:2728419:-	0	-
#Deleted in new
chr8	2728329	2728451	ENSG00000254319.5|AC246817.2|lncRNA|chr8:2728329:2728451:-	0	-
#Deleted in new
chr8	27312303	27312387	ENSG00000120899.17|PTK2B|pc|chr8:27312303:27312387:+	0	+
#Deleted in new
chr8	27313204	27313287	ENSG00000120899.17|PTK2B|pc|chr8:27313204:27313287:+	0	+
#Deleted in new
chr8	27322401	27322499	ENSG00000120899.17|PTK2B|pc|chr8:27322401:27322499:+	0	+
#Deleted in new
chr8	27322666	27322817	ENSG00000120899.17|PTK2B|pc|chr8:27322666:27322817:+	0	+
#Deleted in new
chr8	27323266	27323426	ENSG00000120899.17|PTK2B|pc|chr8:27323266:27323426:+	0	+
#Partially deleted in new
chr8	27451484	27452559	ENSG00000120899.17|PTK2B|pc|chr8:27451484:27452559:+	0	+
#Deleted in new
chr8	27475212	27475272	ENSG00000120903.12|CHRNA2|pc|chr8:27475212:27475272:-	0	-
#Deleted in new
chr8	27475212	27475502	ENSG00000120903.12|CHRNA2|pc|chr8:27475212:27475502:-	0	-
#Partially deleted in new
chr8	27479768	27479857	ENSG00000120903.12|CHRNA2|pc|chr8:27479768:27479857:-	0	-
#Deleted in new
chr8	27490780	27490838	ENSG00000120915.13|EPHX2|pc|chr8:27490780:27490838:+	0	+
#Deleted in new
chr8	27492841	27493165	ENSG00000120915.13|EPHX2|pc|chr8:27492841:27493165:+	0	+
#Partially deleted in new
chr8	27511835	27512100	ENSG00000120915.13|EPHX2|pc|chr8:27511835:27512100:+	0	+
#Partially deleted in new
chr8	27676568	27676776	ENSG00000168077.13|SCARA3|pc|chr8:27676568:27676776:+	0	+
#Deleted in new
chr8	27754515	27754639	ENSG00000253875.1|AC013643.2|lncRNA|chr8:27754515:27754639:+	0	+
#Partially deleted in new
chr8	27764285	27764533	ENSG00000147419.17|CCDC25|pc|chr8:27764285:27764533:-	0	-
#Partially deleted in new
chr8	27776361	27780095	ENSG00000171320.14|ESCO2|pc|chr8:27776361:27780095:+	0	+
#Deleted in new
chr8	27808193	27808228	ENSG00000171320.14|ESCO2|pc|chr8:27808193:27808228:+	0	+
#Deleted in new
chr8	27808193	27808338	ENSG00000171320.14|ESCO2|pc|chr8:27808193:27808338:+	0	+
#Deleted in new
chr8	27811304	27811339	ENSG00000171320.14|ESCO2|pc|chr8:27811304:27811339:+	0	+
#Deleted in new
chr8	27811976	27812640	ENSG00000171320.14|ESCO2|pc|chr8:27811976:27812640:+	0	+
#Deleted in new
chr8	27837651	27837783	ENSG00000168078.9|PBK|pc|chr8:27837651:27837783:-	0	-
#Deleted in new
chr8	27837651	27837809	ENSG00000168078.9|PBK|pc|chr8:27837651:27837809:-	0	-
#Deleted in new
chr8	27837651	27838095	ENSG00000168078.9|PBK|pc|chr8:27837651:27838095:-	0	-
#Deleted in new
chr8	27837709	27838082	ENSG00000168078.9|PBK|pc|chr8:27837709:27838082:-	0	-
#Partially deleted in new
chr8	28021963	28023462	ENSG00000189233.11|NUGGC|pc|chr8:28021963:28023462:-	0	-
#Deleted in new
chr8	2804585	2804709	ENSG00000253853.1|AC246817.1|lncRNA|chr8:2804585:2804709:+	0	+
#Deleted in new
chr8	2808366	2808434	ENSG00000253853.1|AC246817.1|lncRNA|chr8:2808366:2808434:+	0	+
#Deleted in new
chr8	28089672	28089855	ENSG00000134014.16|ELP3|pc|chr8:28089672:28089855:+	0	+
#Deleted in new
chr8	28090230	28090332	ENSG00000134014.16|ELP3|pc|chr8:28090230:28090332:+	0	+
#Deleted in new
chr8	28090345	28090403	ENSG00000134014.16|ELP3|pc|chr8:28090345:28090403:+	0	+
#Deleted in new
chr8	2822393	2822482	ENSG00000253853.1|AC246817.1|lncRNA|chr8:2822393:2822482:+	0	+
#Deleted in new
chr8	28338647	28338788	ENSG00000168081.8|PNOC|pc|chr8:28338647:28338788:+	0	+
#Deleted in new
chr8	28368448	28368565	ENSG00000186918.13|ZNF395|pc|chr8:28368448:28368565:-	0	-
#Deleted in new
chr8	28375261	28375378	ENSG00000186918.13|ZNF395|pc|chr8:28375261:28375378:-	0	-
#Deleted in new
chr8	28375261	28375379	ENSG00000186918.13|ZNF395|pc|chr8:28375261:28375379:-	0	-
#Deleted in new
chr8	28375261	28375382	ENSG00000186918.13|ZNF395|pc|chr8:28375261:28375382:-	0	-
#Deleted in new
chr8	28448953	28449031	ENSG00000253567.1|AC025871.1|lncRNA|chr8:28448953:28449031:+	0	+
#Deleted in new
chr8	28448953	28449106	ENSG00000253567.1|AC025871.1|lncRNA|chr8:28448953:28449106:+	0	+
#Deleted in new
chr8	28455623	28455687	ENSG00000253567.1|AC025871.1|lncRNA|chr8:28455623:28455687:+	0	+
#Deleted in new
chr8	28455623	28455902	ENSG00000253567.1|AC025871.1|lncRNA|chr8:28455623:28455902:+	0	+
#Deleted in new
chr8	28465198	28465445	ENSG00000214050.7|FBXO16|pc|chr8:28465198:28465445:-	0	-
#Deleted in new
chr8	28607690	28607758	ENSG00000012232.8|EXTL3|pc|chr8:28607690:28607758:+	0	+
#Deleted in new
chr8	28631405	28631674	ENSG00000012232.8|EXTL3|pc|chr8:28631405:28631674:+	0	+
#Deleted in new
chr8	28631431	28631550	ENSG00000012232.8|EXTL3|pc|chr8:28631431:28631550:+	0	+
#Deleted in new
chr8	28637301	28637429	ENSG00000012232.8|EXTL3|pc|chr8:28637301:28637429:+	0	+
#Deleted in new
chr8	28637336	28637429	ENSG00000012232.8|EXTL3|pc|chr8:28637336:28637429:+	0	+
#Deleted in new
chr8	28685885	28686008	ENSG00000012232.8|EXTL3|pc|chr8:28685885:28686008:+	0	+
#Deleted in new
chr8	28696197	28698474	ENSG00000246339.5|EXTL3-AS1|lncRNA|chr8:28696197:28698474:-	0	-
#Deleted in new
chr8	28698211	28698474	ENSG00000246339.5|EXTL3-AS1|lncRNA|chr8:28698211:28698474:-	0	-
#Deleted in new
chr8	28698402	28698474	ENSG00000246339.5|EXTL3-AS1|lncRNA|chr8:28698402:28698474:-	0	-
#Partially deleted in new
chr8	28699529	28699829	ENSG00000012232.8|EXTL3|pc|chr8:28699529:28699829:+	0	+
#Deleted in new
chr8	28710354	28710503	ENSG00000012232.8|EXTL3|pc|chr8:28710354:28710503:+	0	+
#Deleted in new
chr8	28710357	28710503	ENSG00000012232.8|EXTL3|pc|chr8:28710357:28710503:+	0	+
#Deleted in new
chr8	28730159	28730218	ENSG00000012232.8|EXTL3|pc|chr8:28730159:28730218:+	0	+
#Partially deleted in new
chr8	28739900	28743214	ENSG00000012232.8|EXTL3|pc|chr8:28739900:28743214:+	0	+
#Deleted in new
chr8	28743975	28744083	ENSG00000012232.8|EXTL3|pc|chr8:28743975:28744083:+	0	+
#Deleted in new
chr8	28783584	28784000	ENSG00000104299.14|INTS9|pc|chr8:28783584:28784000:-	0	-
#Deleted in new
chr8	28924639	28924755	ENSG00000147421.17|HMBOX1|pc|chr8:28924639:28924755:+	0	+
#Deleted in new
chr8	28955850	28955955	ENSG00000259196.1|HMBOX1-IT1|lncRNA|chr8:28955850:28955955:+	0	+
#Partially deleted in new
chr8	29046299	29046416	ENSG00000147421.17|HMBOX1|pc|chr8:29046299:29046416:+	0	+
#Deleted in new
chr8	29068167	29068454	ENSG00000259607.1|AC108449.3|lncRNA|chr8:29068167:29068454:+	0	+
#Deleted in new
chr8	29110572	29110670	ENSG00000254129.1|AC108449.1|lncRNA|chr8:29110572:29110670:+	0	+
#Deleted in new
chr8	29138524	29138642	ENSG00000254129.1|AC108449.1|lncRNA|chr8:29138524:29138642:+	0	+
#Partially deleted in new
chr8	29145857	29146540	ENSG00000197892.12|KIF13B|pc|chr8:29145857:29146540:-	0	-
#Partially deleted in new
chr8	29145862	29146540	ENSG00000197892.12|KIF13B|pc|chr8:29145862:29146540:-	0	-
#Partially deleted in new
chr8	29189300	29191057	ENSG00000197892.12|KIF13B|pc|chr8:29189300:29191057:-	0	-
#Deleted in new
chr8	29527311	29527420	ENSG00000253632.1|AC084026.2|lncRNA|chr8:29527311:29527420:+	0	+
#Deleted in new
chr8	29724876	29725019	ENSG00000251191.7|LINC00589|lncRNA|chr8:29724876:29725019:-	0	-
#Deleted in new
chr8	29726155	29726423	ENSG00000251191.7|LINC00589|lncRNA|chr8:29726155:29726423:-	0	-
#Deleted in new
chr8	29748014	29748109	ENSG00000251191.7|LINC00589|lncRNA|chr8:29748014:29748109:-	0	-
#Deleted in new
chr8	29748308	29748579	ENSG00000253490.5|LINC02099|lncRNA|chr8:29748308:29748579:+	0	+
#Deleted in new
chr8	29748324	29748579	ENSG00000253490.5|LINC02099|lncRNA|chr8:29748324:29748579:+	0	+
#Deleted in new
chr8	29748349	29748579	ENSG00000253490.5|LINC02099|lncRNA|chr8:29748349:29748579:+	0	+
#Deleted in new
chr8	29749052	29749093	ENSG00000253490.5|LINC02099|lncRNA|chr8:29749052:29749093:+	0	+
#Deleted in new
chr8	29821429	29821914	ENSG00000248964.6|AC131254.1|lncRNA|chr8:29821429:29821914:-	0	-
#Deleted in new
chr8	29854474	29854543	ENSG00000248964.6|AC131254.1|lncRNA|chr8:29854474:29854543:-	0	-
#Deleted in new
chr8	29864643	29864698	ENSG00000254086.1|AC131254.3|lncRNA|chr8:29864643:29864698:+	0	+
#Deleted in new
chr8	29908533	29908956	ENSG00000253604.1|AC131254.2|lncRNA|chr8:29908533:29908956:+	0	+
#Deleted in new
chr8	29923036	29923321	ENSG00000253279.5|LINC02209|lncRNA|chr8:29923036:29923321:+	0	+
#Deleted in new
chr8	29952189	29952637	ENSG00000253279.5|LINC02209|lncRNA|chr8:29952189:29952637:+	0	+
#Deleted in new
chr8	29952189	29953724	ENSG00000253279.5|LINC02209|lncRNA|chr8:29952189:29953724:+	0	+
#Deleted in new
chr8	30078211	30078256	ENSG00000133872.13|SARAF|pc|chr8:30078211:30078256:-	0	-
#Partially deleted in new
chr8	30082228	30082424	ENSG00000133872.13|SARAF|pc|chr8:30082228:30082424:-	0	-
#Partially deleted in new
chr8	30104733	30105087	ENSG00000104660.17|LEPROTL1|pc|chr8:30104733:30105087:+	0	+
#Partially deleted in new
chr8	30137271	30138348	ENSG00000104660.17|LEPROTL1|pc|chr8:30137271:30138348:+	0	+
#Deleted in new
chr8	30155829	30156232	ENSG00000271869.1|AC026979.3|lncRNA|chr8:30155829:30156232:-	0	-
#Deleted in new
chr8	30165715	30165901	ENSG00000104671.7|DCTN6|pc|chr8:30165715:30165901:+	0	+
#Deleted in new
chr8	30176553	30176888	ENSG00000253708.1|AC026979.2|lncRNA|chr8:30176553:30176888:-	0	-
#Partially deleted in new
chr8	30177125	30177494	ENSG00000104671.7|DCTN6|pc|chr8:30177125:30177494:+	0	+
#Partially deleted in new
chr8	30180640	30180888	ENSG00000253708.1|AC026979.2|lncRNA|chr8:30180640:30180888:-	0	-
#Partially deleted in new
chr8	30197403	30198048	ENSG00000272375.1|AC026979.4|lncRNA|chr8:30197403:30198048:+	0	+
#Partially deleted in new
chr8	30383543	30383697	ENSG00000254109.5|RBPMS-AS1|lncRNA|chr8:30383543:30383697:-	0	-
#Deleted in new
chr8	30397926	30397986	ENSG00000157110.15|RBPMS|pc|chr8:30397926:30397986:+	0	+
#Partially deleted in new
chr8	30442719	30442800	ENSG00000157110.15|RBPMS|pc|chr8:30442719:30442800:+	0	+
#Deleted in new
chr8	30444675	30444880	ENSG00000157110.15|RBPMS|pc|chr8:30444675:30444880:+	0	+
#Deleted in new
chr8	30445233	30445349	ENSG00000157110.15|RBPMS|pc|chr8:30445233:30445349:+	0	+
#Deleted in new
chr8	30537577	30537723	ENSG00000157110.15|RBPMS|pc|chr8:30537577:30537723:+	0	+
#Partially deleted in new
chr8	30545163	30545220	ENSG00000157110.15|RBPMS|pc|chr8:30545163:30545220:+	0	+
#Deleted in new
chr8	30549499	30549585	ENSG00000157110.15|RBPMS|pc|chr8:30549499:30549585:+	0	+
#Partially deleted in new
chr8	30561943	30562149	ENSG00000157110.15|RBPMS|pc|chr8:30561943:30562149:+	0	+
#Deleted in new
chr8	30584502	30584903	ENSG00000197265.8|GTF2E2|pc|chr8:30584502:30584903:-	0	-
#Deleted in new
chr8	30584968	30585158	ENSG00000197265.8|GTF2E2|pc|chr8:30584968:30585158:-	0	-
#Deleted in new
chr8	30643479	30643514	ENSG00000253457.2|SMIM18|pc|chr8:30643479:30643514:+	0	+
#Deleted in new
chr8	30643582	30643597	ENSG00000253457.2|SMIM18|pc|chr8:30643582:30643597:+	0	+
#Deleted in new
chr8	30644491	30644572	ENSG00000253457.2|SMIM18|pc|chr8:30644491:30644572:+	0	+
#Deleted in new
chr8	30644509	30644525	ENSG00000253457.2|SMIM18|pc|chr8:30644509:30644525:+	0	+
#Deleted in new
chr8	30732246	30732370	ENSG00000104691.14|UBXN8|pc|chr8:30732246:30732370:+	0	+
#Deleted in new
chr8	30732618	30733308	ENSG00000104691.14|UBXN8|pc|chr8:30732618:30733308:+	0	+
#Deleted in new
chr8	30733215	30733308	ENSG00000104691.14|UBXN8|pc|chr8:30733215:30733308:+	0	+
#Deleted in new
chr8	30753034	30753105	ENSG00000104691.14|UBXN8|pc|chr8:30753034:30753105:+	0	+
#Deleted in new
chr8	30756118	30756283	ENSG00000104691.14|UBXN8|pc|chr8:30756118:30756283:+	0	+
#Deleted in new
chr8	30774456	30774625	ENSG00000104695.12|PPP2CB|pc|chr8:30774456:30774625:-	0	-
#Deleted in new
chr8	30774832	30774930	ENSG00000104695.12|PPP2CB|pc|chr8:30774832:30774930:-	0	-
#Partially deleted in new
chr8	30793115	30794078	ENSG00000104695.12|PPP2CB|pc|chr8:30793115:30794078:-	0	-
#Deleted in new
chr8	30813886	30814314	ENSG00000104695.12|PPP2CB|pc|chr8:30813886:30814314:-	0	-
#Deleted in new
chr8	30887675	30887773	ENSG00000133863.7|TEX15|pc|chr8:30887675:30887773:-	0	-
#Deleted in new
chr8	311132	311285	ENSG00000249868.5|AC136777.1|lncRNA|chr8:311132:311285:-	0	-
#Deleted in new
chr8	3112959	3113363	ENSG00000183117.18|CSMD1|pc|chr8:3112959:3113363:-	0	-
#Deleted in new
chr8	31171122	31171318	ENSG00000253961.1|AC009563.1|lncRNA|chr8:31171122:31171318:-	0	-
#Deleted in new
chr8	31171525	31171584	ENSG00000253961.1|AC009563.1|lncRNA|chr8:31171525:31171584:-	0	-
#Deleted in new
chr8	31176691	31176872	ENSG00000253961.1|AC009563.1|lncRNA|chr8:31176691:31176872:-	0	-
#Deleted in new
chr8	31176691	31177006	ENSG00000253961.1|AC009563.1|lncRNA|chr8:31176691:31177006:-	0	-
#Deleted in new
chr8	31177094	31177167	ENSG00000253961.1|AC009563.1|lncRNA|chr8:31177094:31177167:-	0	-
#Deleted in new
chr8	31275595	31275808	ENSG00000253377.1|AC068672.2|lncRNA|chr8:31275595:31275808:+	0	+
#Deleted in new
chr8	31343671	31343815	ENSG00000254095.1|AC068672.3|lncRNA|chr8:31343671:31343815:+	0	+
#Deleted in new
chr8	31343681	31343815	ENSG00000254095.1|AC068672.3|lncRNA|chr8:31343681:31343815:+	0	+
#Deleted in new
chr8	31343694	31343815	ENSG00000254095.1|AC068672.3|lncRNA|chr8:31343694:31343815:+	0	+
#Deleted in new
chr8	31344130	31344429	ENSG00000254095.1|AC068672.3|lncRNA|chr8:31344130:31344429:+	0	+
#Partially deleted in new
chr8	31344130	31344633	ENSG00000254095.1|AC068672.3|lncRNA|chr8:31344130:31344633:+	0	+
#Deleted in new
chr8	31384156	31384279	ENSG00000253377.1|AC068672.2|lncRNA|chr8:31384156:31384279:+	0	+
#Deleted in new
chr8	31497422	31497556	ENSG00000253275.1|AC068672.1|lncRNA|chr8:31497422:31497556:+	0	+
#Deleted in new
chr8	31498418	31498612	ENSG00000253275.1|AC068672.1|lncRNA|chr8:31498418:31498612:+	0	+
#Deleted in new
chr8	3182990	3183146	ENSG00000183117.18|CSMD1|pc|chr8:3182990:3183146:-	0	-
#Deleted in new
chr8	32026218	32026364	ENSG00000253974.5|NRG1-IT1|lncRNA|chr8:32026218:32026364:+	0	+
#Deleted in new
chr8	32026230	32026364	ENSG00000253974.5|NRG1-IT1|lncRNA|chr8:32026230:32026364:+	0	+
#Deleted in new
chr8	32026326	32026364	ENSG00000253974.5|NRG1-IT1|lncRNA|chr8:32026326:32026364:+	0	+
#Deleted in new
chr8	32029378	32029485	ENSG00000253974.5|NRG1-IT1|lncRNA|chr8:32029378:32029485:+	0	+
#Deleted in new
chr8	32136660	32136751	ENSG00000253974.5|NRG1-IT1|lncRNA|chr8:32136660:32136751:+	0	+
#Deleted in new
chr8	32139214	32139277	ENSG00000253974.5|NRG1-IT1|lncRNA|chr8:32139214:32139277:+	0	+
#Deleted in new
chr8	32139214	32139475	ENSG00000253974.5|NRG1-IT1|lncRNA|chr8:32139214:32139475:+	0	+
#Deleted in new
chr8	32171381	32171458	ENSG00000157168.18|NRG1|pc|chr8:32171381:32171458:+	0	+
#Deleted in new
chr8	32287100	32287447	ENSG00000157168.18|NRG1|pc|chr8:32287100:32287447:+	0	+
#Deleted in new
chr8	32287100	32287566	ENSG00000157168.18|NRG1|pc|chr8:32287100:32287566:+	0	+
#Deleted in new
chr8	3278363	3279163	ENSG00000183117.18|CSMD1|pc|chr8:3278363:3279163:-	0	-
#Deleted in new
chr8	32996177	32996316	ENSG00000247134.6|AC090204.1|lncRNA|chr8:32996177:32996316:+	0	+
#Deleted in new
chr8	330263	330332	ENSG00000249868.5|AC136777.1|lncRNA|chr8:330263:330332:-	0	-
#Deleted in new
chr8	33044366	33044802	ENSG00000247134.6|AC090204.1|lncRNA|chr8:33044366:33044802:+	0	+
#Deleted in new
chr8	33044366	33044855	ENSG00000247134.6|AC090204.1|lncRNA|chr8:33044366:33044855:+	0	+
#Deleted in new
chr8	330879	331026	ENSG00000249868.5|AC136777.1|lncRNA|chr8:330879:331026:-	0	-
#Partially deleted in new
chr8	33360838	33361415	ENSG00000272338.2|AC067838.1|lncRNA|chr8:33360838:33361415:-	0	-
#Deleted in new
chr8	33394217	33394255	ENSG00000172728.15|FUT10|pc|chr8:33394217:33394255:-	0	-
#Partially deleted in new
chr8	33451727	33453510	ENSG00000172728.15|FUT10|pc|chr8:33451727:33453510:-	0	-
#Deleted in new
chr8	33460711	33460771	ENSG00000172728.15|FUT10|pc|chr8:33460711:33460771:-	0	-
#Partially deleted in new
chr8	33473063	33473091	ENSG00000172728.15|FUT10|pc|chr8:33473063:33473091:-	0	-
#Partially deleted in new
chr8	33473385	33474428	ENSG00000129696.12|TTI2|pc|chr8:33473385:33474428:-	0	-
#Deleted in new
chr8	33604855	33604916	ENSG00000253642.5|AF279873.3|lncRNA|chr8:33604855:33604916:+	0	+
#Deleted in new
chr8	33610758	33611058	ENSG00000253642.5|AF279873.3|lncRNA|chr8:33610758:33611058:+	0	+
#Deleted in new
chr8	3375139	3375226	ENSG00000253162.1|AC026991.1|lncRNA|chr8:3375139:3375226:-	0	-
#Deleted in new
chr8	33755776	33755905	ENSG00000253642.5|AF279873.3|lncRNA|chr8:33755776:33755905:+	0	+
#Deleted in new
chr8	34005239	34005336	ENSG00000254194.5|AF279873.4|lncRNA|chr8:34005239:34005336:-	0	-
#Deleted in new
chr8	34034885	34034924	ENSG00000253642.5|AF279873.3|lncRNA|chr8:34034885:34034924:+	0	+
#Deleted in new
chr8	34038362	34038485	ENSG00000253642.5|AF279873.3|lncRNA|chr8:34038362:34038485:+	0	+
#Deleted in new
chr8	34038362	34038923	ENSG00000253642.5|AF279873.3|lncRNA|chr8:34038362:34038923:+	0	+
#Deleted in new
chr8	34038362	34039008	ENSG00000253642.5|AF279873.3|lncRNA|chr8:34038362:34039008:+	0	+
#Deleted in new
chr8	34174885	34175013	ENSG00000254302.1|AC087855.2|lncRNA|chr8:34174885:34175013:+	0	+
#Deleted in new
chr8	34228438	34228512	ENSG00000253108.1|AC090993.1|lncRNA|chr8:34228438:34228512:+	0	+
#Deleted in new
chr8	34229293	34229500	ENSG00000254033.1|AC087855.1|lncRNA|chr8:34229293:34229500:-	0	-
#Deleted in new
chr8	34229420	34229548	ENSG00000253108.1|AC090993.1|lncRNA|chr8:34229420:34229548:+	0	+
#Partially deleted in new
chr8	34248723	34248946	ENSG00000254033.1|AC087855.1|lncRNA|chr8:34248723:34248946:-	0	-
#Deleted in new
chr8	34297258	34297338	ENSG00000253108.1|AC090993.1|lncRNA|chr8:34297258:34297338:+	0	+
#Deleted in new
chr8	34340059	34340212	ENSG00000253108.1|AC090993.1|lncRNA|chr8:34340059:34340212:+	0	+
#Deleted in new
chr8	34819271	34819405	ENSG00000254344.1|LINC01288|lncRNA|chr8:34819271:34819405:+	0	+
#Deleted in new
chr8	34864656	34864798	ENSG00000254344.1|LINC01288|lncRNA|chr8:34864656:34864798:+	0	+
#Deleted in new
chr8	35544391	35544535	ENSG00000156687.10|UNC5D|pc|chr8:35544391:35544535:+	0	+
#Partially deleted in new
chr8	35892553	35892683	ENSG00000253452.5|AC100818.1|lncRNA|chr8:35892553:35892683:+	0	+
#Deleted in new
chr8	35900382	35900504	ENSG00000253452.5|AC100818.1|lncRNA|chr8:35900382:35900504:+	0	+
#Deleted in new
chr8	35926033	35926120	ENSG00000253452.5|AC100818.1|lncRNA|chr8:35926033:35926120:+	0	+
#Deleted in new
chr8	35929719	35929757	ENSG00000253452.5|AC100818.1|lncRNA|chr8:35929719:35929757:+	0	+
#Deleted in new
chr8	35970612	35970665	ENSG00000253452.5|AC100818.1|lncRNA|chr8:35970612:35970665:+	0	+
#Deleted in new
chr8	36034866	36034948	ENSG00000253524.1|AC124290.1|lncRNA|chr8:36034866:36034948:-	0	-
#Deleted in new
chr8	36093977	36094009	ENSG00000253524.1|AC124290.1|lncRNA|chr8:36093977:36094009:-	0	-
#Deleted in new
chr8	36093977	36094025	ENSG00000253524.1|AC124290.1|lncRNA|chr8:36093977:36094025:-	0	-
#Deleted in new
chr8	36095011	36095046	ENSG00000253524.1|AC124290.1|lncRNA|chr8:36095011:36095046:-	0	-
#Deleted in new
chr8	3613275	3613278	ENSG00000183117.18|CSMD1|pc|chr8:3613275:3613278:-	0	-
#Deleted in new
chr8	36537390	36537476	ENSG00000253363.5|AC090809.1|lncRNA|chr8:36537390:36537476:-	0	-
#Deleted in new
chr8	36701820	36701893	ENSG00000253363.5|AC090809.1|lncRNA|chr8:36701820:36701893:-	0	-
#Deleted in new
chr8	36764953	36765205	ENSG00000253363.5|AC090809.1|lncRNA|chr8:36764953:36765205:-	0	-
#Deleted in new
chr8	36765056	36765205	ENSG00000253363.5|AC090809.1|lncRNA|chr8:36765056:36765205:-	0	-
#Deleted in new
chr8	36779037	36779164	ENSG00000253363.5|AC090809.1|lncRNA|chr8:36779037:36779164:-	0	-
#Deleted in new
chr8	36922982	36923044	ENSG00000215262.7|KCNU1|pc|chr8:36922982:36923044:+	0	+
#Deleted in new
chr8	36928904	36929043	ENSG00000215262.7|KCNU1|pc|chr8:36928904:36929043:+	0	+
#Deleted in new
chr8	3704740	3704857	ENSG00000183117.18|CSMD1|pc|chr8:3704740:3704857:-	0	-
#Deleted in new
chr8	37405438	37405987	ENSG00000253746.1|AC091182.2|lncRNA|chr8:37405438:37405987:-	0	-
#Deleted in new
chr8	37406695	37406724	ENSG00000253746.1|AC091182.2|lncRNA|chr8:37406695:37406724:-	0	-
#Deleted in new
chr8	37431748	37431787	ENSG00000253161.5|LINC01605|lncRNA|chr8:37431748:37431787:-	0	-
#Deleted in new
chr8	37531311	37531398	ENSG00000253161.5|LINC01605|lncRNA|chr8:37531311:37531398:-	0	-
#Deleted in new
chr8	375930	377045	ENSG00000182366.9|FAM87A|lncRNA|chr8:375930:377045:-	0	-
#Deleted in new
chr8	37597634	37597736	ENSG00000254290.1|AC124067.4|lncRNA|chr8:37597634:37597736:-	0	-
#Deleted in new
chr8	376242	377759	ENSG00000182366.9|FAM87A|lncRNA|chr8:376242:377759:-	0	-
#Deleted in new
chr8	37626014	37626424	ENSG00000253344.1|AC137579.1|lncRNA|chr8:37626014:37626424:-	0	-
#Split in new
chr8	37744570	37746550	ENSG00000147475.14|ERLIN2|pc|chr8:37744570:37746550:+	0	+
#Split in new
chr8	37744570	37746553	ENSG00000147475.14|ERLIN2|pc|chr8:37744570:37746553:+	0	+
#Partially deleted in new
chr8	37745568	37746522	ENSG00000147475.14|ERLIN2|pc|chr8:37745568:37746522:+	0	+
#Partially deleted in new
chr8	37745568	37746548	ENSG00000147475.14|ERLIN2|pc|chr8:37745568:37746548:+	0	+
#Deleted in new
chr8	377563	380309	ENSG00000182366.9|FAM87A|lncRNA|chr8:377563:380309:-	0	-
#Deleted in new
chr8	37766481	37766716	ENSG00000147471.11|PLPBP|pc|chr8:37766481:37766716:+	0	+
#Deleted in new
chr8	377778	378240	ENSG00000182366.9|FAM87A|lncRNA|chr8:377778:378240:-	0	-
#Deleted in new
chr8	378241	378637	ENSG00000182366.9|FAM87A|lncRNA|chr8:378241:378637:-	0	-
#Deleted in new
chr8	37845685	37845774	ENSG00000104221.12|BRF2|pc|chr8:37845685:37845774:-	0	-
#Deleted in new
chr8	379087	379458	ENSG00000182366.9|FAM87A|lncRNA|chr8:379087:379458:-	0	-
#Deleted in new
chr8	379907	380309	ENSG00000182366.9|FAM87A|lncRNA|chr8:379907:380309:-	0	-
#Deleted in new
chr8	38047338	38047391	ENSG00000187840.4|EIF4EBP1|pc|chr8:38047338:38047391:+	0	+
#Deleted in new
chr8	38062880	38063791	ENSG00000260949.1|AP006545.1|lncRNA|chr8:38062880:38063791:+	0	+
#Deleted in new
chr8	38099470	38099931	ENSG00000272128.1|AP006545.2|lncRNA|chr8:38099470:38099931:+	0	+
#Deleted in new
chr8	381155	381192	ENSG00000182366.9|FAM87A|lncRNA|chr8:381155:381192:-	0	-
#Deleted in new
chr8	38123273	38123319	ENSG00000240015.2|AC084024.1|lncRNA|chr8:38123273:38123319:+	0	+
#Deleted in new
chr8	38124076	38124651	ENSG00000240015.2|AC084024.1|lncRNA|chr8:38124076:38124651:+	0	+
#Partially deleted in new
chr8	38137494	38138875	ENSG00000129691.15|ASH2L|pc|chr8:38137494:38138875:+	0	+
#Deleted in new
chr8	38149075	38149118	ENSG00000147465.11|STAR|pc|chr8:38149075:38149118:-	0	-
#Deleted in new
chr8	38225217	38225308	ENSG00000085788.13|DDHD2|pc|chr8:38225217:38225308:+	0	+
#Partially deleted in new
chr8	38238088	38239058	ENSG00000085788.13|DDHD2|pc|chr8:38238088:38239058:+	0	+
#Partially deleted in new
chr8	38246803	38247835	ENSG00000085788.13|DDHD2|pc|chr8:38246803:38247835:+	0	+
#Deleted in new
chr8	38265539	38265622	ENSG00000147535.16|PLPP5|pc|chr8:38265539:38265622:-	0	-
#Deleted in new
chr8	383059	383174	ENSG00000182366.9|FAM87A|lncRNA|chr8:383059:383174:-	0	-
#Deleted in new
chr8	38363872	38363900	ENSG00000147548.16|NSD3|pc|chr8:38363872:38363900:-	0	-
#Partially deleted in new
chr8	38386544	38386568	ENSG00000165046.12|LETM2|pc|chr8:38386544:38386568:+	0	+
#Deleted in new
chr8	38396972	38397132	ENSG00000165046.12|LETM2|pc|chr8:38396972:38397132:+	0	+
#Partially deleted in new
chr8	38412084	38412595	ENSG00000077782.19|FGFR1|pc|chr8:38412084:38412595:-	0	-
#Deleted in new
chr8	38458846	38458969	ENSG00000077782.19|FGFR1|pc|chr8:38458846:38458969:-	0	-
#Deleted in new
chr8	38458846	38458984	ENSG00000077782.19|FGFR1|pc|chr8:38458846:38458984:-	0	-
#Deleted in new
chr8	38463104	38463400	ENSG00000077782.19|FGFR1|pc|chr8:38463104:38463400:-	0	-
#Deleted in new
chr8	38543651	38543846	ENSG00000253361.1|AC069120.1|lncRNA|chr8:38543651:38543846:-	0	-
#Deleted in new
chr8	38728587	38728671	ENSG00000147526.19|TACC1|pc|chr8:38728587:38728671:+	0	+
#Deleted in new
chr8	38728616	38728730	ENSG00000147526.19|TACC1|pc|chr8:38728616:38728730:+	0	+
#Deleted in new
chr8	38728639	38728671	ENSG00000147526.19|TACC1|pc|chr8:38728639:38728671:+	0	+
#Deleted in new
chr8	38744894	38745201	ENSG00000147526.19|TACC1|pc|chr8:38744894:38745201:+	0	+
#Deleted in new
chr8	38744894	38745352	ENSG00000147526.19|TACC1|pc|chr8:38744894:38745352:+	0	+
#Deleted in new
chr8	38744894	38745493	ENSG00000147526.19|TACC1|pc|chr8:38744894:38745493:+	0	+
#Partially deleted in new
chr8	38785910	38785943	ENSG00000147526.19|TACC1|pc|chr8:38785910:38785943:+	0	+
#Deleted in new
chr8	38802187	38802296	ENSG00000253586.1|AC067817.1|lncRNA|chr8:38802187:38802296:+	0	+
#Deleted in new
chr8	38805449	38805644	ENSG00000147526.19|TACC1|pc|chr8:38805449:38805644:+	0	+
#Deleted in new
chr8	38805451	38805644	ENSG00000147526.19|TACC1|pc|chr8:38805451:38805644:+	0	+
#Partially deleted in new
chr8	38839283	38840267	ENSG00000147526.19|TACC1|pc|chr8:38839283:38840267:+	0	+
#Deleted in new
chr8	38839326	38839449	ENSG00000147526.19|TACC1|pc|chr8:38839326:38839449:+	0	+
#Partially deleted in new
chr8	38840050	38840267	ENSG00000147526.19|TACC1|pc|chr8:38840050:38840267:+	0	+
#Deleted in new
chr8	38846157	38846439	ENSG00000253829.1|AC067817.2|lncRNA|chr8:38846157:38846439:-	0	-
#Partially deleted in new
chr8	38971615	38971850	ENSG00000169499.14|PLEKHA2|pc|chr8:38971615:38971850:+	0	+
#Deleted in new
chr8	38972231	38972562	ENSG00000169499.14|PLEKHA2|pc|chr8:38972231:38972562:+	0	+
#Deleted in new
chr8	38995598	38995624	ENSG00000169490.16|TM2D2|pc|chr8:38995598:38995624:-	0	-
#Deleted in new
chr8	39075887	39076275	ENSG00000168615.11|ADAM9|pc|chr8:39075887:39076275:+	0	+
#Deleted in new
chr8	39107955	39108201	ENSG00000197140.14|ADAM32|pc|chr8:39107955:39108201:+	0	+
#Deleted in new
chr8	39129975	39130097	ENSG00000197140.14|ADAM32|pc|chr8:39129975:39130097:+	0	+
#Partially deleted in new
chr8	39165029	39169997	ENSG00000197140.14|ADAM32|pc|chr8:39165029:39169997:+	0	+
#Partially deleted in new
chr8	39220934	39221702	ENSG00000197140.14|ADAM32|pc|chr8:39220934:39221702:+	0	+
#Deleted in new
chr8	39246082	39246166	ENSG00000197140.14|ADAM32|pc|chr8:39246082:39246166:+	0	+
#Deleted in new
chr8	39275827	39275866	ENSG00000197140.14|ADAM32|pc|chr8:39275827:39275866:+	0	+
#Deleted in new
chr8	39275827	39276297	ENSG00000197140.14|ADAM32|pc|chr8:39275827:39276297:+	0	+
#Deleted in new
chr8	39284792	39284909	ENSG00000197140.14|ADAM32|pc|chr8:39284792:39284909:+	0	+
#Deleted in new
chr8	39284792	39284911	ENSG00000197140.14|ADAM32|pc|chr8:39284792:39284911:+	0	+
#Deleted in new
chr8	3949955	3949959	ENSG00000183117.18|CSMD1|pc|chr8:3949955:3949959:-	0	-
#Deleted in new
chr8	39604626	39604736	ENSG00000168619.15|ADAM18|pc|chr8:39604626:39604736:+	0	+
#Deleted in new
chr8	39605727	39605761	ENSG00000168619.15|ADAM18|pc|chr8:39605727:39605761:+	0	+
#Deleted in new
chr8	39685129	39685412	ENSG00000168619.15|ADAM18|pc|chr8:39685129:39685412:+	0	+
#Deleted in new
chr8	39685173	39685412	ENSG00000168619.15|ADAM18|pc|chr8:39685173:39685412:+	0	+
#Deleted in new
chr8	39774660	39774702	ENSG00000104755.14|ADAM2|pc|chr8:39774660:39774702:-	0	-
#Deleted in new
chr8	39809409	39809466	ENSG00000104755.14|ADAM2|pc|chr8:39809409:39809466:-	0	-
#Deleted in new
chr8	39817901	39818092	ENSG00000104755.14|ADAM2|pc|chr8:39817901:39818092:-	0	-
#Deleted in new
chr8	39902274	39902448	ENSG00000131203.12|IDO1|pc|chr8:39902274:39902448:+	0	+
#Deleted in new
chr8	39902370	39902448	ENSG00000131203.12|IDO1|pc|chr8:39902370:39902448:+	0	+
#Deleted in new
chr8	39902374	39902448	ENSG00000131203.12|IDO1|pc|chr8:39902374:39902448:+	0	+
#Deleted in new
chr8	39902379	39902448	ENSG00000131203.12|IDO1|pc|chr8:39902379:39902448:+	0	+
#Deleted in new
chr8	39903774	39904021	ENSG00000253939.1|AC007991.3|lncRNA|chr8:39903774:39904021:-	0	-
#Deleted in new
chr8	39908988	39909030	ENSG00000131203.12|IDO1|pc|chr8:39908988:39909030:+	0	+
#Deleted in new
chr8	39909178	39909348	ENSG00000131203.12|IDO1|pc|chr8:39909178:39909348:+	0	+
#Deleted in new
chr8	39915636	39915721	ENSG00000253838.1|AC007991.2|lncRNA|chr8:39915636:39915721:+	0	+
#Deleted in new
chr8	39986899	39987085	ENSG00000188676.13|IDO2|pc|chr8:39986899:39987085:+	0	+
#Deleted in new
chr8	39987377	39987498	ENSG00000253939.1|AC007991.3|lncRNA|chr8:39987377:39987498:-	0	-
#Partially deleted in new
chr8	39995114	39995248	ENSG00000253939.1|AC007991.3|lncRNA|chr8:39995114:39995248:-	0	-
#Partially deleted in new
chr8	40107882	40107935	ENSG00000253381.1|AC087518.1|lncRNA|chr8:40107882:40107935:+	0	+
#Deleted in new
chr8	40125525	40125653	ENSG00000253665.1|AC022733.1|lncRNA|chr8:40125525:40125653:+	0	+
#Deleted in new
chr8	40127080	40127468	ENSG00000253665.1|AC022733.1|lncRNA|chr8:40127080:40127468:+	0	+
#Deleted in new
chr8	40161457	40161559	ENSG00000254143.1|AC022733.2|lncRNA|chr8:40161457:40161559:+	0	+
#Deleted in new
chr8	40304686	40304783	ENSG00000253802.1|AC105999.2|lncRNA|chr8:40304686:40304783:-	0	-
#Deleted in new
chr8	40311191	40311261	ENSG00000253802.1|AC105999.2|lncRNA|chr8:40311191:40311261:-	0	-
#Deleted in new
chr8	40333172	40333669	ENSG00000253802.1|AC105999.2|lncRNA|chr8:40333172:40333669:-	0	-
#Deleted in new
chr8	40333873	40333953	ENSG00000253802.1|AC105999.2|lncRNA|chr8:40333873:40333953:-	0	-
#Deleted in new
chr8	40401014	40401073	ENSG00000253354.1|AC105999.1|lncRNA|chr8:40401014:40401073:+	0	+
#Deleted in new
chr8	40401668	40401848	ENSG00000253354.1|AC105999.1|lncRNA|chr8:40401668:40401848:+	0	+
#Partially deleted in new
chr8	40519564	40520158	ENSG00000272479.1|AC010857.1|lncRNA|chr8:40519564:40520158:-	0	-
#Deleted in new
chr8	406427	406678	ENSG00000147364.16|FBXO25|pc|chr8:406427:406678:+	0	+
#Deleted in new
chr8	406807	407066	ENSG00000147364.16|FBXO25|pc|chr8:406807:407066:+	0	+
#Deleted in new
chr8	406954	407066	ENSG00000147364.16|FBXO25|pc|chr8:406954:407066:+	0	+
#Deleted in new
chr8	40900015	40900143	ENSG00000254383.1|AC048387.1|lncRNA|chr8:40900015:40900143:-	0	-
#Deleted in new
chr8	41275114	41275327	ENSG00000253509.1|AC104393.1|lncRNA|chr8:41275114:41275327:-	0	-
#Deleted in new
chr8	41435297	41435640	ENSG00000253396.1|AC016868.1|lncRNA|chr8:41435297:41435640:+	0	+
#Deleted in new
chr8	41440363	41440419	ENSG00000253396.1|AC016868.1|lncRNA|chr8:41440363:41440419:+	0	+
#Partially deleted in new
chr8	41529205	41529396	ENSG00000147536.11|GINS4|pc|chr8:41529205:41529396:+	0	+
#Partially deleted in new
chr8	41529217	41529396	ENSG00000147536.11|GINS4|pc|chr8:41529217:41529396:+	0	+
#Partially deleted in new
chr8	41529226	41529396	ENSG00000147536.11|GINS4|pc|chr8:41529226:41529396:+	0	+
#Partially deleted in new
chr8	41529229	41529396	ENSG00000147536.11|GINS4|pc|chr8:41529229:41529396:+	0	+
#Partially deleted in new
chr8	41529236	41529388	ENSG00000147536.11|GINS4|pc|chr8:41529236:41529388:+	0	+
#Partially deleted in new
chr8	41529248	41529396	ENSG00000147536.11|GINS4|pc|chr8:41529248:41529396:+	0	+
#Deleted in new
chr8	41534154	41534410	ENSG00000253133.1|AC009630.1|lncRNA|chr8:41534154:41534410:-	0	-
#Partially deleted in new
chr8	41537179	41538036	ENSG00000147536.11|GINS4|pc|chr8:41537179:41538036:+	0	+
#Deleted in new
chr8	41540380	41540410	ENSG00000253174.2|AC009630.2|lncRNA|chr8:41540380:41540410:-	0	-
#Partially deleted in new
chr8	41541990	41542402	ENSG00000147536.11|GINS4|pc|chr8:41541990:41542402:+	0	+
#Partially deleted in new
chr8	41541990	41542409	ENSG00000147536.11|GINS4|pc|chr8:41541990:41542409:+	0	+
#Partially deleted in new
chr8	41543955	41544769	ENSG00000253174.2|AC009630.2|lncRNA|chr8:41543955:41544769:-	0	-
#Deleted in new
chr8	41577186	41577435	ENSG00000158669.11|GPAT4|pc|chr8:41577186:41577435:+	0	+
#Deleted in new
chr8	41578187	41578278	ENSG00000158669.11|GPAT4|pc|chr8:41578187:41578278:+	0	+
#Deleted in new
chr8	41578199	41578278	ENSG00000158669.11|GPAT4|pc|chr8:41578199:41578278:+	0	+
#Deleted in new
chr8	41578214	41578278	ENSG00000158669.11|GPAT4|pc|chr8:41578214:41578278:+	0	+
#Deleted in new
chr8	41578305	41578368	ENSG00000253133.1|AC009630.1|lncRNA|chr8:41578305:41578368:-	0	-
#Deleted in new
chr8	41578414	41578580	ENSG00000158669.11|GPAT4|pc|chr8:41578414:41578580:+	0	+
#Deleted in new
chr8	41584771	41584917	ENSG00000158669.11|GPAT4|pc|chr8:41584771:41584917:+	0	+
#Deleted in new
chr8	41584772	41584917	ENSG00000158669.11|GPAT4|pc|chr8:41584772:41584917:+	0	+
#Deleted in new
chr8	41610598	41610621	ENSG00000158669.11|GPAT4|pc|chr8:41610598:41610621:+	0	+
#Deleted in new
chr8	41664086	41664248	ENSG00000253389.2|AC113133.1|lncRNA|chr8:41664086:41664248:+	0	+
#Deleted in new
chr8	41697726	41697846	ENSG00000029534.19|ANK1|pc|chr8:41697726:41697846:-	0	-
#Deleted in new
chr8	41797511	41797593	ENSG00000029534.19|ANK1|pc|chr8:41797511:41797593:-	0	-
#Deleted in new
chr8	41797511	41797622	ENSG00000029534.19|ANK1|pc|chr8:41797511:41797622:-	0	-
#Partially deleted in new
chr8	41957048	41958363	ENSG00000083168.9|KAT6A|pc|chr8:41957048:41958363:-	0	-
#Deleted in new
chr8	420396	420448	ENSG00000147364.16|FBXO25|pc|chr8:420396:420448:+	0	+
#Partially deleted in new
chr8	42151771	42152763	ENSG00000261449.1|AC103724.3|lncRNA|chr8:42151771:42152763:-	0	-
#Deleted in new
chr8	42171528	42171673	ENSG00000070718.11|AP3M2|pc|chr8:42171528:42171673:+	0	+
#Partially deleted in new
chr8	42187905	42188489	ENSG00000104368.17|PLAT|pc|chr8:42187905:42188489:-	0	-
#Deleted in new
chr8	42233674	42233859	ENSG00000253408.5|AC083973.1|lncRNA|chr8:42233674:42233859:-	0	-
#Deleted in new
chr8	42249051	42249361	ENSG00000253408.5|AC083973.1|lncRNA|chr8:42249051:42249361:-	0	-
#Deleted in new
chr8	42255327	42255514	ENSG00000253408.5|AC083973.1|lncRNA|chr8:42255327:42255514:-	0	-
#Deleted in new
chr8	42263328	42263406	ENSG00000253408.5|AC083973.1|lncRNA|chr8:42263328:42263406:-	0	-
#Deleted in new
chr8	42263328	42263472	ENSG00000253408.5|AC083973.1|lncRNA|chr8:42263328:42263472:-	0	-
#Deleted in new
chr8	42270351	42270388	ENSG00000253408.5|AC083973.1|lncRNA|chr8:42270351:42270388:-	0	-
#Deleted in new
chr8	42270650	42270911	ENSG00000253408.5|AC083973.1|lncRNA|chr8:42270650:42270911:-	0	-
#Deleted in new
chr8	42270650	42270920	ENSG00000253408.5|AC083973.1|lncRNA|chr8:42270650:42270920:-	0	-
#Deleted in new
chr8	42270650	42271197	ENSG00000253408.5|AC083973.1|lncRNA|chr8:42270650:42271197:-	0	-
#Partially deleted in new
chr8	42271571	42271733	ENSG00000104365.13|IKBKB|pc|chr8:42271571:42271733:+	0	+
#Deleted in new
chr8	42309461	42309765	ENSG00000104365.13|IKBKB|pc|chr8:42309461:42309765:+	0	+
#Partially deleted in new
chr8	42314024	42314429	ENSG00000104365.13|IKBKB|pc|chr8:42314024:42314429:+	0	+
#Partially deleted in new
chr8	42324637	42326097	ENSG00000104365.13|IKBKB|pc|chr8:42324637:42326097:+	0	+
#Deleted in new
chr8	42325293	42325361	ENSG00000104365.13|IKBKB|pc|chr8:42325293:42325361:+	0	+
#Partially deleted in new
chr8	42339692	42340147	ENSG00000070501.11|POLB|pc|chr8:42339692:42340147:+	0	+
#Deleted in new
chr8	42370113	42370181	ENSG00000070501.11|POLB|pc|chr8:42370113:42370181:+	0	+
#Deleted in new
chr8	42393844	42393884	ENSG00000078668.13|VDAC3|pc|chr8:42393844:42393884:+	0	+
#Partially deleted in new
chr8	42463215	42463371	ENSG00000168575.9|SLC20A2|pc|chr8:42463215:42463371:-	0	-
#Deleted in new
chr8	42471066	42471201	ENSG00000168575.9|SLC20A2|pc|chr8:42471066:42471201:-	0	-
#Partially deleted in new
chr8	42538205	42538304	ENSG00000254165.1|AC090739.1|lncRNA|chr8:42538205:42538304:-	0	-
#Deleted in new
chr8	42705582	42705993	ENSG00000255101.1|AC103843.1|lncRNA|chr8:42705582:42705993:-	0	-
#Deleted in new
chr8	42714869	42714995	ENSG00000255101.1|AC103843.1|lncRNA|chr8:42714869:42714995:-	0	-
#Deleted in new
chr8	42721801	42721946	ENSG00000255101.1|AC103843.1|lncRNA|chr8:42721801:42721946:-	0	-
#Deleted in new
chr8	42796332	42796392	ENSG00000147434.8|CHRNA6|pc|chr8:42796332:42796392:-	0	-
#Deleted in new
chr8	42994433	42994492	ENSG00000168172.8|HOOK3|pc|chr8:42994433:42994492:+	0	+
#Partially deleted in new
chr8	43027428	43028112	ENSG00000168172.8|HOOK3|pc|chr8:43027428:43028112:+	0	+
#Deleted in new
chr8	43034193	43034392	ENSG00000168522.12|FNTA|pc|chr8:43034193:43034392:+	0	+
#Deleted in new
chr8	43056591	43056760	ENSG00000168522.12|FNTA|pc|chr8:43056591:43056760:+	0	+
#Partially deleted in new
chr8	43056672	43057307	ENSG00000168522.12|FNTA|pc|chr8:43056672:43057307:+	0	+
#Deleted in new
chr8	43070101	43070353	ENSG00000168522.12|FNTA|pc|chr8:43070101:43070353:+	0	+
#Partially deleted in new
chr8	43076646	43083180	ENSG00000168522.12|FNTA|pc|chr8:43076646:43083180:+	0	+
#Partially deleted in new
chr8	43077215	43080441	ENSG00000168522.12|FNTA|pc|chr8:43077215:43080441:+	0	+
#Deleted in new
chr8	43093505	43093563	ENSG00000185900.9|POMK|pc|chr8:43093505:43093563:+	0	+
#Deleted in new
chr8	43093514	43093563	ENSG00000185900.9|POMK|pc|chr8:43093514:43093563:+	0	+
#Deleted in new
chr8	43093517	43093563	ENSG00000185900.9|POMK|pc|chr8:43093517:43093563:+	0	+
#Deleted in new
chr8	43102504	43102600	ENSG00000185900.9|POMK|pc|chr8:43102504:43102600:+	0	+
#Deleted in new
chr8	43167943	43168008	ENSG00000165102.14|HGSNAT|pc|chr8:43167943:43168008:+	0	+
#Deleted in new
chr8	43167943	43168061	ENSG00000165102.14|HGSNAT|pc|chr8:43167943:43168061:+	0	+
#Partially deleted in new
chr8	43173712	43174232	ENSG00000165102.14|HGSNAT|pc|chr8:43173712:43174232:+	0	+
#Deleted in new
chr8	43180288	43180738	ENSG00000165102.14|HGSNAT|pc|chr8:43180288:43180738:+	0	+
#Deleted in new
chr8	43182348	43182415	ENSG00000165102.14|HGSNAT|pc|chr8:43182348:43182415:+	0	+
#Deleted in new
chr8	43196429	43196540	ENSG00000165102.14|HGSNAT|pc|chr8:43196429:43196540:+	0	+
#Partially deleted in new
chr8	467719	468180	ENSG00000147364.16|FBXO25|pc|chr8:467719:468180:+	0	+
#Deleted in new
chr8	467950	468014	ENSG00000147364.16|FBXO25|pc|chr8:467950:468014:+	0	+
#Deleted in new
chr8	46822236	46822428	ENSG00000253314.5|LINC00293|lncRNA|chr8:46822236:46822428:+	0	+
#Partially deleted in new
chr8	46836741	46836798	ENSG00000253314.5|LINC00293|lncRNA|chr8:46836741:46836798:+	0	+
#Deleted in new
chr8	46840815	46840935	ENSG00000253314.5|LINC00293|lncRNA|chr8:46840815:46840935:+	0	+
#Deleted in new
chr8	46840874	46840935	ENSG00000253314.5|LINC00293|lncRNA|chr8:46840874:46840935:+	0	+
#Deleted in new
chr8	46840894	46840935	ENSG00000253314.5|LINC00293|lncRNA|chr8:46840894:46840935:+	0	+
#Deleted in new
chr8	46841044	46841126	ENSG00000253314.5|LINC00293|lncRNA|chr8:46841044:46841126:+	0	+
#Deleted in new
chr8	46842276	46842352	ENSG00000253314.5|LINC00293|lncRNA|chr8:46842276:46842352:+	0	+
#Deleted in new
chr8	46843349	46843426	ENSG00000253314.5|LINC00293|lncRNA|chr8:46843349:46843426:+	0	+
#Deleted in new
chr8	46844188	46844296	ENSG00000253314.5|LINC00293|lncRNA|chr8:46844188:46844296:+	0	+
#Deleted in new
chr8	46846028	46846081	ENSG00000253314.5|LINC00293|lncRNA|chr8:46846028:46846081:+	0	+
#Deleted in new
chr8	46847975	46848009	ENSG00000253314.5|LINC00293|lncRNA|chr8:46847975:46848009:+	0	+
#Deleted in new
chr8	46847975	46848066	ENSG00000253314.5|LINC00293|lncRNA|chr8:46847975:46848066:+	0	+
#Deleted in new
chr8	46847975	46848100	ENSG00000253314.5|LINC00293|lncRNA|chr8:46847975:46848100:+	0	+
#Deleted in new
chr8	46848783	46848901	ENSG00000253314.5|LINC00293|lncRNA|chr8:46848783:46848901:+	0	+
#Deleted in new
chr8	46848783	46849530	ENSG00000253314.5|LINC00293|lncRNA|chr8:46848783:46849530:+	0	+
#Deleted in new
chr8	46849448	46849530	ENSG00000253314.5|LINC00293|lncRNA|chr8:46849448:46849530:+	0	+
#Deleted in new
chr8	46850667	46850743	ENSG00000253314.5|LINC00293|lncRNA|chr8:46850667:46850743:+	0	+
#Deleted in new
chr8	46854106	46854211	ENSG00000253314.5|LINC00293|lncRNA|chr8:46854106:46854211:+	0	+
#Deleted in new
chr8	46854106	46854307	ENSG00000253314.5|LINC00293|lncRNA|chr8:46854106:46854307:+	0	+
#Partially deleted in new
chr8	468714	477967	ENSG00000147364.16|FBXO25|pc|chr8:468714:477967:+	0	+
#Deleted in new
chr8	46922560	46922968	ENSG00000253745.1|AC091163.1|lncRNA|chr8:46922560:46922968:+	0	+
#Deleted in new
chr8	46928635	46928832	ENSG00000253745.1|AC091163.1|lncRNA|chr8:46928635:46928832:+	0	+
#Deleted in new
chr8	46931319	46931436	ENSG00000253782.1|AC091163.2|lncRNA|chr8:46931319:46931436:-	0	-
#Deleted in new
chr8	470565	471225	ENSG00000147364.16|FBXO25|pc|chr8:470565:471225:+	0	+
#Deleted in new
chr8	47260574	47260991	ENSG00000164808.16|SPIDR|pc|chr8:47260574:47260991:+	0	+
#Deleted in new
chr8	47260877	47260991	ENSG00000164808.16|SPIDR|pc|chr8:47260877:47260991:+	0	+
#Deleted in new
chr8	47260912	47260991	ENSG00000164808.16|SPIDR|pc|chr8:47260912:47260991:+	0	+
#Deleted in new
chr8	47260930	47260991	ENSG00000164808.16|SPIDR|pc|chr8:47260930:47260991:+	0	+
#Deleted in new
chr8	47260935	47260991	ENSG00000164808.16|SPIDR|pc|chr8:47260935:47260991:+	0	+
#Deleted in new
chr8	47260941	47260991	ENSG00000164808.16|SPIDR|pc|chr8:47260941:47260991:+	0	+
#Deleted in new
chr8	47260952	47260991	ENSG00000164808.16|SPIDR|pc|chr8:47260952:47260991:+	0	+
#Deleted in new
chr8	47260954	47260991	ENSG00000164808.16|SPIDR|pc|chr8:47260954:47260991:+	0	+
#Deleted in new
chr8	47260955	47260991	ENSG00000164808.16|SPIDR|pc|chr8:47260955:47260991:+	0	+
#Deleted in new
chr8	47260964	47260991	ENSG00000164808.16|SPIDR|pc|chr8:47260964:47260991:+	0	+
#Deleted in new
chr8	47276832	47277071	ENSG00000164808.16|SPIDR|pc|chr8:47276832:47277071:+	0	+
#Deleted in new
chr8	47279269	47279436	ENSG00000164808.16|SPIDR|pc|chr8:47279269:47279436:+	0	+
#Deleted in new
chr8	47330779	47330895	ENSG00000164808.16|SPIDR|pc|chr8:47330779:47330895:+	0	+
#Partially deleted in new
chr8	47360818	47360949	ENSG00000164808.16|SPIDR|pc|chr8:47360818:47360949:+	0	+
#Deleted in new
chr8	47388340	47388444	ENSG00000164808.16|SPIDR|pc|chr8:47388340:47388444:+	0	+
#Deleted in new
chr8	47388340	47388484	ENSG00000164808.16|SPIDR|pc|chr8:47388340:47388484:+	0	+
#Deleted in new
chr8	47419102	47419268	ENSG00000164808.16|SPIDR|pc|chr8:47419102:47419268:+	0	+
#Deleted in new
chr8	47654087	47654149	ENSG00000164808.16|SPIDR|pc|chr8:47654087:47654149:+	0	+
#Partially deleted in new
chr8	47659663	47659690	ENSG00000164808.16|SPIDR|pc|chr8:47659663:47659690:+	0	+
#Deleted in new
chr8	47660444	47660514	ENSG00000164808.16|SPIDR|pc|chr8:47660444:47660514:+	0	+
#Deleted in new
chr8	47688441	47688542	ENSG00000164808.16|SPIDR|pc|chr8:47688441:47688542:+	0	+
#Deleted in new
chr8	47697755	47697933	ENSG00000164808.16|SPIDR|pc|chr8:47697755:47697933:+	0	+
#Partially deleted in new
chr8	47773107	47774377	ENSG00000253729.7|PRKDC|pc|chr8:47773107:47774377:-	0	-
#Partially deleted in new
chr8	47959114	47959309	ENSG00000253729.7|PRKDC|pc|chr8:47959114:47959309:-	0	-
#Deleted in new
chr8	47969024	47969401	ENSG00000104738.16|MCM4|pc|chr8:47969024:47969401:+	0	+
#Partially deleted in new
chr8	47973691	47974962	ENSG00000104738.16|MCM4|pc|chr8:47973691:47974962:+	0	+
#Deleted in new
chr8	48034865	48035061	ENSG00000169139.11|UBE2V2|pc|chr8:48034865:48035061:+	0	+
#Deleted in new
chr8	48515851	48516356	ENSG00000253140.1|AC026904.2|lncRNA|chr8:48515851:48516356:-	0	-
#Deleted in new
chr8	48517057	48517089	ENSG00000253140.1|AC026904.2|lncRNA|chr8:48517057:48517089:-	0	-
#Partially deleted in new
chr8	48551526	48552556	ENSG00000253688.2|AC026904.3|lncRNA|chr8:48551526:48552556:-	0	-
#Deleted in new
chr8	48551566	48551665	ENSG00000253608.1|AC022915.2|lncRNA|chr8:48551566:48551665:+	0	+
#Deleted in new
chr8	48551815	48552072	ENSG00000253608.1|AC022915.2|lncRNA|chr8:48551815:48552072:+	0	+
#Deleted in new
chr8	48552014	48552556	ENSG00000253688.2|AC026904.3|lncRNA|chr8:48552014:48552556:-	0	-
#Deleted in new
chr8	48552713	48552778	ENSG00000253688.2|AC026904.3|lncRNA|chr8:48552713:48552778:-	0	-
#Deleted in new
chr8	48590400	48590698	ENSG00000233858.4|AC026904.1|lncRNA|chr8:48590400:48590698:+	0	+
#Deleted in new
chr8	48591370	48594621	ENSG00000233858.4|AC026904.1|lncRNA|chr8:48591370:48594621:+	0	+
#Deleted in new
chr8	48597457	48597518	ENSG00000253702.1|AC026904.4|lncRNA|chr8:48597457:48597518:-	0	-
#Deleted in new
chr8	48600611	48600736	ENSG00000253702.1|AC026904.4|lncRNA|chr8:48600611:48600736:-	0	-
#Deleted in new
chr8	48602107	48602229	ENSG00000253702.1|AC026904.4|lncRNA|chr8:48602107:48602229:-	0	-
#Deleted in new
chr8	486116	488512	ENSG00000279852.1|AC083964.2|lncRNA|chr8:486116:488512:-	0	-
#Deleted in new
chr8	48623671	48623895	ENSG00000253455.1|AC022915.1|lncRNA|chr8:48623671:48623895:+	0	+
#Deleted in new
chr8	48657259	48657688	ENSG00000253892.1|AC022915.3|lncRNA|chr8:48657259:48657688:-	0	-
#Deleted in new
chr8	48658729	48658894	ENSG00000253892.1|AC022915.3|lncRNA|chr8:48658729:48658894:-	0	-
#Deleted in new
chr8	48695423	48695486	ENSG00000253608.1|AC022915.2|lncRNA|chr8:48695423:48695486:+	0	+
#Deleted in new
chr8	48714914	48716534	ENSG00000034239.10|EFCAB1|pc|chr8:48714914:48716534:-	0	-
#Deleted in new
chr8	48716223	48716534	ENSG00000034239.10|EFCAB1|pc|chr8:48716223:48716534:-	0	-
#Deleted in new
chr8	49054310	49054369	ENSG00000168333.13|C8orf22|pc|chr8:49054310:49054369:+	0	+
#Deleted in new
chr8	49072340	49072482	ENSG00000168333.13|C8orf22|pc|chr8:49072340:49072482:+	0	+
#Deleted in new
chr8	49072343	49072482	ENSG00000168333.13|C8orf22|pc|chr8:49072343:49072482:+	0	+
#Deleted in new
chr8	49072353	49072482	ENSG00000168333.13|C8orf22|pc|chr8:49072353:49072482:+	0	+
#Deleted in new
chr8	49072786	49072885	ENSG00000168333.13|C8orf22|pc|chr8:49072786:49072885:+	0	+
#Deleted in new
chr8	49074058	49074136	ENSG00000168333.13|C8orf22|pc|chr8:49074058:49074136:+	0	+
#Deleted in new
chr8	49074233	49074333	ENSG00000168333.13|C8orf22|pc|chr8:49074233:49074333:+	0	+
#Deleted in new
chr8	49074509	49075602	ENSG00000168333.13|C8orf22|pc|chr8:49074509:49075602:+	0	+
#Deleted in new
chr8	49075151	49075471	ENSG00000168333.13|C8orf22|pc|chr8:49075151:49075471:+	0	+
#Deleted in new
chr8	49075151	49075603	ENSG00000168333.13|C8orf22|pc|chr8:49075151:49075603:+	0	+
#Deleted in new
chr8	49075234	49076090	ENSG00000168333.13|C8orf22|pc|chr8:49075234:49076090:+	0	+
#Deleted in new
chr8	49168538	49168809	ENSG00000253474.1|AC022568.1|lncRNA|chr8:49168538:49168809:+	0	+
#Deleted in new
chr8	49168681	49168809	ENSG00000253474.1|AC022568.1|lncRNA|chr8:49168681:49168809:+	0	+
#Deleted in new
chr8	49193106	49193195	ENSG00000253474.1|AC022568.1|lncRNA|chr8:49193106:49193195:+	0	+
#Deleted in new
chr8	49224937	49225050	ENSG00000253474.1|AC022568.1|lncRNA|chr8:49224937:49225050:+	0	+
#Deleted in new
chr8	49224940	49225029	ENSG00000253474.1|AC022568.1|lncRNA|chr8:49224940:49225029:+	0	+
#Deleted in new
chr8	49228139	49228220	ENSG00000253474.1|AC022568.1|lncRNA|chr8:49228139:49228220:+	0	+
#Deleted in new
chr8	49228557	49228925	ENSG00000253474.1|AC022568.1|lncRNA|chr8:49228557:49228925:+	0	+
#Deleted in new
chr8	49496762	49496975	ENSG00000253380.1|AC090155.2|lncRNA|chr8:49496762:49496975:-	0	-
#Deleted in new
chr8	494971	495010	ENSG00000180190.11|TDRP|pc|chr8:494971:495010:-	0	-
#Deleted in new
chr8	49512126	49512180	ENSG00000253380.1|AC090155.2|lncRNA|chr8:49512126:49512180:-	0	-
#Deleted in new
chr8	49536385	49536498	ENSG00000253206.1|AC090155.1|lncRNA|chr8:49536385:49536498:-	0	-
#Deleted in new
chr8	49537156	49537252	ENSG00000253206.1|AC090155.1|lncRNA|chr8:49537156:49537252:-	0	-
#Deleted in new
chr8	49544450	49544596	ENSG00000253206.1|AC090155.1|lncRNA|chr8:49544450:49544596:-	0	-
#Deleted in new
chr8	49554362	49554414	ENSG00000253206.1|AC090155.1|lncRNA|chr8:49554362:49554414:-	0	-
#Deleted in new
chr8	49817585	49817821	ENSG00000253484.1|AC113145.1|lncRNA|chr8:49817585:49817821:-	0	-
#Deleted in new
chr8	49819277	49819439	ENSG00000253484.1|AC113145.1|lncRNA|chr8:49819277:49819439:-	0	-
#Deleted in new
chr8	49820930	49820944	ENSG00000253484.1|AC113145.1|lncRNA|chr8:49820930:49820944:-	0	-
#Partially deleted in new
chr8	49906862	49907446	ENSG00000271148.1|AC023762.1|lncRNA|chr8:49906862:49907446:-	0	-
#Deleted in new
chr8	50011775	50011857	ENSG00000147481.14|SNTG1|pc|chr8:50011775:50011857:+	0	+
#Deleted in new
chr8	50163498	50163969	ENSG00000147481.14|SNTG1|pc|chr8:50163498:50163969:+	0	+
#Deleted in new
chr8	50172560	50172635	ENSG00000147481.14|SNTG1|pc|chr8:50172560:50172635:+	0	+
#Deleted in new
chr8	50286537	50286853	ENSG00000147481.14|SNTG1|pc|chr8:50286537:50286853:+	0	+
#Deleted in new
chr8	50381014	50381078	ENSG00000253849.1|AC090539.1|lncRNA|chr8:50381014:50381078:+	0	+
#Deleted in new
chr8	50381905	50382275	ENSG00000253849.1|AC090539.1|lncRNA|chr8:50381905:50382275:+	0	+
#Deleted in new
chr8	51257687	51257807	ENSG00000253664.1|AC012413.1|lncRNA|chr8:51257687:51257807:+	0	+
#Partially deleted in new
chr8	51319577	51320022	ENSG00000147485.12|PXDNL|pc|chr8:51319577:51320022:-	0	-
#Partially deleted in new
chr8	51319578	51320022	ENSG00000147485.12|PXDNL|pc|chr8:51319578:51320022:-	0	-
#Deleted in new
chr8	51320719	51321118	ENSG00000253664.1|AC012413.1|lncRNA|chr8:51320719:51321118:+	0	+
#Deleted in new
chr8	51320783	51320897	ENSG00000147485.12|PXDNL|pc|chr8:51320783:51320897:-	0	-
#Deleted in new
chr8	51449001	51449118	ENSG00000147485.12|PXDNL|pc|chr8:51449001:51449118:-	0	-
#Deleted in new
chr8	51483642	51483714	ENSG00000147485.12|PXDNL|pc|chr8:51483642:51483714:-	0	-
#Deleted in new
chr8	51499698	51499770	ENSG00000147485.12|PXDNL|pc|chr8:51499698:51499770:-	0	-
#Deleted in new
chr8	51895956	51896055	ENSG00000253475.1|AC103769.1|lncRNA|chr8:51895956:51896055:-	0	-
#Deleted in new
chr8	51896190	51896374	ENSG00000253475.1|AC103769.1|lncRNA|chr8:51896190:51896374:-	0	-
#Deleted in new
chr8	51898929	51898970	ENSG00000168300.13|PCMTD1|pc|chr8:51898929:51898970:-	0	-
#Deleted in new
chr8	51898929	51899024	ENSG00000168300.13|PCMTD1|pc|chr8:51898929:51899024:-	0	-
#Deleted in new
chr8	51898929	51899036	ENSG00000168300.13|PCMTD1|pc|chr8:51898929:51899036:-	0	-
#Deleted in new
chr8	51898929	51899098	ENSG00000168300.13|PCMTD1|pc|chr8:51898929:51899098:-	0	-
#Deleted in new
chr8	51898929	51899113	ENSG00000168300.13|PCMTD1|pc|chr8:51898929:51899113:-	0	-
#Deleted in new
chr8	51898929	51899186	ENSG00000168300.13|PCMTD1|pc|chr8:51898929:51899186:-	0	-
#Deleted in new
chr8	51899324	51899846	ENSG00000228801.5|AC064807.1|lncRNA|chr8:51899324:51899846:+	0	+
#Deleted in new
chr8	51899648	51899846	ENSG00000228801.5|AC064807.1|lncRNA|chr8:51899648:51899846:+	0	+
#Deleted in new
chr8	51899714	51900207	ENSG00000228801.5|AC064807.1|lncRNA|chr8:51899714:51900207:+	0	+
#Deleted in new
chr8	51899733	51899846	ENSG00000228801.5|AC064807.1|lncRNA|chr8:51899733:51899846:+	0	+
#Deleted in new
chr8	51911419	51911729	ENSG00000228801.5|AC064807.1|lncRNA|chr8:51911419:51911729:+	0	+
#Deleted in new
chr8	51913056	51913138	ENSG00000228801.5|AC064807.1|lncRNA|chr8:51913056:51913138:+	0	+
#Deleted in new
chr8	51913056	51913180	ENSG00000228801.5|AC064807.1|lncRNA|chr8:51913056:51913180:+	0	+
#Deleted in new
chr8	51946435	51946605	ENSG00000228801.5|AC064807.1|lncRNA|chr8:51946435:51946605:+	0	+
#Deleted in new
chr8	51946435	51947173	ENSG00000228801.5|AC064807.1|lncRNA|chr8:51946435:51947173:+	0	+
#Deleted in new
chr8	51950283	51950690	ENSG00000272024.1|AC064807.4|lncRNA|chr8:51950283:51950690:+	0	+
#Deleted in new
chr8	51961457	51961570	ENSG00000253844.1|AC064807.2|lncRNA|chr8:51961457:51961570:+	0	+
#Deleted in new
chr8	51996209	51996267	ENSG00000254136.1|AC064807.3|lncRNA|chr8:51996209:51996267:-	0	-
#Deleted in new
chr8	52007943	52008355	ENSG00000254136.1|AC064807.3|lncRNA|chr8:52007943:52008355:-	0	-
#Deleted in new
chr8	52194361	52194753	ENSG00000253551.1|AC021915.1|lncRNA|chr8:52194361:52194753:+	0	+
#Partially deleted in new
chr8	52206415	52206750	ENSG00000147488.11|ST18|pc|chr8:52206415:52206750:-	0	-
#Deleted in new
chr8	52206582	52206750	ENSG00000147488.11|ST18|pc|chr8:52206582:52206750:-	0	-
#Deleted in new
chr8	52301850	52301942	ENSG00000253924.1|AC103831.1|lncRNA|chr8:52301850:52301942:+	0	+
#Deleted in new
chr8	52393575	52393879	ENSG00000147488.11|ST18|pc|chr8:52393575:52393879:-	0	-
#Partially deleted in new
chr8	52685936	52686156	ENSG00000023287.12|RB1CC1|pc|chr8:52685936:52686156:-	0	-
#Deleted in new
chr8	52745548	52745843	ENSG00000023287.12|RB1CC1|pc|chr8:52745548:52745843:-	0	-
#Deleted in new
chr8	53216298	53216423	ENSG00000254687.1|AC009646.2|lncRNA|chr8:53216298:53216423:+	0	+
#Deleted in new
chr8	53216298	53216504	ENSG00000254687.1|AC009646.2|lncRNA|chr8:53216298:53216504:+	0	+
#Deleted in new
chr8	53242527	53242683	ENSG00000254687.1|AC009646.2|lncRNA|chr8:53242527:53242683:+	0	+
#Deleted in new
chr8	53242738	53242912	ENSG00000082556.10|OPRK1|pc|chr8:53242738:53242912:-	0	-
#Deleted in new
chr8	53388700	53390872	ENSG00000260484.1|AC131902.2|lncRNA|chr8:53388700:53390872:-	0	-
#Deleted in new
chr8	53395210	53395756	ENSG00000253369.1|AC131902.1|lncRNA|chr8:53395210:53395756:-	0	-
#Deleted in new
chr8	53395898	53395946	ENSG00000253369.1|AC131902.1|lncRNA|chr8:53395898:53395946:-	0	-
#Deleted in new
chr8	53515169	53515606	ENSG00000254204.1|AC022034.4|lncRNA|chr8:53515169:53515606:+	0	+
#Deleted in new
chr8	53515170	53516954	ENSG00000237807.3|AC022034.2|lncRNA|chr8:53515170:53516954:-	0	-
#Deleted in new
chr8	53515873	53515905	ENSG00000254204.1|AC022034.4|lncRNA|chr8:53515873:53515905:+	0	+
#Deleted in new
chr8	53523328	53523931	ENSG00000237807.3|AC022034.2|lncRNA|chr8:53523328:53523931:-	0	-
#Deleted in new
chr8	53739552	53739623	ENSG00000047249.17|ATP6V1H|pc|chr8:53739552:53739623:-	0	-
#Deleted in new
chr8	53842955	53843017	ENSG00000047249.17|ATP6V1H|pc|chr8:53842955:53843017:-	0	-
#Deleted in new
chr8	53913496	53913922	ENSG00000147509.13|RGS20|pc|chr8:53913496:53913922:+	0	+
#Deleted in new
chr8	53945324	53945370	ENSG00000147509.13|RGS20|pc|chr8:53945324:53945370:+	0	+
#Deleted in new
chr8	53970287	53970293	ENSG00000187735.13|TCEA1|pc|chr8:53970287:53970293:-	0	-
#Deleted in new
chr8	53978522	53978697	ENSG00000187735.13|TCEA1|pc|chr8:53978522:53978697:-	0	-
#Deleted in new
chr8	54002891	54002940	ENSG00000187735.13|TCEA1|pc|chr8:54002891:54002940:-	0	-
#Deleted in new
chr8	54002891	54003086	ENSG00000187735.13|TCEA1|pc|chr8:54002891:54003086:-	0	-
#Deleted in new
chr8	54002891	54003092	ENSG00000187735.13|TCEA1|pc|chr8:54002891:54003092:-	0	-
#Deleted in new
chr8	54009762	54009769	ENSG00000187735.13|TCEA1|pc|chr8:54009762:54009769:-	0	-
#Deleted in new
chr8	54010101	54010110	ENSG00000187735.13|TCEA1|pc|chr8:54010101:54010110:-	0	-
#Deleted in new
chr8	54010286	54010294	ENSG00000187735.13|TCEA1|pc|chr8:54010286:54010294:-	0	-
#Deleted in new
chr8	54021525	54021586	ENSG00000187735.13|TCEA1|pc|chr8:54021525:54021586:-	0	-
#Deleted in new
chr8	54021525	54021929	ENSG00000187735.13|TCEA1|pc|chr8:54021525:54021929:-	0	-
#Deleted in new
chr8	54042988	54043218	ENSG00000260955.2|AC100821.2|lncRNA|chr8:54042988:54043218:-	0	-
#Deleted in new
chr8	54045556	54045629	ENSG00000260955.2|AC100821.2|lncRNA|chr8:54045556:54045629:-	0	-
#Deleted in new
chr8	54100223	54100347	ENSG00000120992.17|LYPLA1|pc|chr8:54100223:54100347:-	0	-
#Deleted in new
chr8	54560292	54560486	ENSG00000104237.7|RP1|pc|chr8:54560292:54560486:+	0	+
#Deleted in new
chr8	54560295	54560486	ENSG00000104237.7|RP1|pc|chr8:54560295:54560486:+	0	+
#Deleted in new
chr8	545613	545781	ENSG00000180190.11|TDRP|pc|chr8:545613:545781:-	0	-
#Deleted in new
chr8	5506067	5509126	ENSG00000253510.1|AC004944.1|lncRNA|chr8:5506067:5509126:-	0	-
#Deleted in new
chr8	55135202	55135652	ENSG00000253976.1|AC022679.2|lncRNA|chr8:55135202:55135652:-	0	-
#Deleted in new
chr8	55140089	55140216	ENSG00000253976.1|AC022679.2|lncRNA|chr8:55140089:55140216:-	0	-
#Deleted in new
chr8	55164122	55164183	ENSG00000253857.1|AC022679.1|lncRNA|chr8:55164122:55164183:+	0	+
#Deleted in new
chr8	55517239	55517786	ENSG00000254357.1|AC090200.1|lncRNA|chr8:55517239:55517786:-	0	-
#Deleted in new
chr8	55520934	55520977	ENSG00000254357.1|AC090200.1|lncRNA|chr8:55520934:55520977:-	0	-
#Deleted in new
chr8	55696423	55696834	ENSG00000167904.14|TMEM68|pc|chr8:55696423:55696834:-	0	-
#Deleted in new
chr8	55725115	55725259	ENSG00000167904.14|TMEM68|pc|chr8:55725115:55725259:-	0	-
#Partially deleted in new
chr8	55763421	55763701	ENSG00000167904.14|TMEM68|pc|chr8:55763421:55763701:-	0	-
#Partially deleted in new
chr8	55763636	55763701	ENSG00000167904.14|TMEM68|pc|chr8:55763636:55763701:-	0	-
#Deleted in new
chr8	55772975	55773121	ENSG00000167904.14|TMEM68|pc|chr8:55772975:55773121:-	0	-
#Partially deleted in new
chr8	55893594	55894104	ENSG00000254325.2|AC018607.1|lncRNA|chr8:55893594:55894104:+	0	+
#Deleted in new
chr8	55895576	55895739	ENSG00000254325.2|AC018607.1|lncRNA|chr8:55895576:55895739:+	0	+
#Deleted in new
chr8	55940233	55940327	ENSG00000254087.7|LYN|pc|chr8:55940233:55940327:+	0	+
#Deleted in new
chr8	55955095	55955293	ENSG00000254087.7|LYN|pc|chr8:55955095:55955293:+	0	+
#Deleted in new
chr8	56067294	56068530	ENSG00000008988.9|RPS20|pc|chr8:56067294:56068530:-	0	-
#Deleted in new
chr8	56069702	56069833	ENSG00000008988.9|RPS20|pc|chr8:56069702:56069833:-	0	-
#Deleted in new
chr8	56069737	56069833	ENSG00000008988.9|RPS20|pc|chr8:56069737:56069833:-	0	-
#Partially deleted in new
chr8	56073315	56073768	ENSG00000008988.9|RPS20|pc|chr8:56073315:56073768:-	0	-
#Partially deleted in new
chr8	56214427	56214517	ENSG00000170791.17|CHCHD7|pc|chr8:56214427:56214517:+	0	+
#Partially deleted in new
chr8	56436673	56437076	ENSG00000181195.10|PENK|pc|chr8:56436673:56437076:-	0	-
#Partially deleted in new
chr8	56436714	56437076	ENSG00000181195.10|PENK|pc|chr8:56436714:56437076:-	0	-
#Deleted in new
chr8	56489097	56489250	ENSG00000254254.5|AC012349.1|lncRNA|chr8:56489097:56489250:+	0	+
#Deleted in new
chr8	56520118	56520567	ENSG00000246430.6|LINC00968|lncRNA|chr8:56520118:56520567:-	0	-
#Deleted in new
chr8	56520120	56520567	ENSG00000246430.6|LINC00968|lncRNA|chr8:56520120:56520567:-	0	-
#Deleted in new
chr8	56520158	56520567	ENSG00000246430.6|LINC00968|lncRNA|chr8:56520158:56520567:-	0	-
#Deleted in new
chr8	56520314	56520635	ENSG00000246430.6|LINC00968|lncRNA|chr8:56520314:56520635:-	0	-
#Deleted in new
chr8	56520377	56520567	ENSG00000246430.6|LINC00968|lncRNA|chr8:56520377:56520567:-	0	-
#Deleted in new
chr8	56520386	56520614	ENSG00000246430.6|LINC00968|lncRNA|chr8:56520386:56520614:-	0	-
#Deleted in new
chr8	56524623	56524749	ENSG00000254254.5|AC012349.1|lncRNA|chr8:56524623:56524749:+	0	+
#Deleted in new
chr8	56534945	56535009	ENSG00000246430.6|LINC00968|lncRNA|chr8:56534945:56535009:-	0	-
#Deleted in new
chr8	56536757	56537203	ENSG00000253139.1|AC013644.1|lncRNA|chr8:56536757:56537203:-	0	-
#Deleted in new
chr8	56537056	56537203	ENSG00000253139.1|AC013644.1|lncRNA|chr8:56537056:56537203:-	0	-
#Partially deleted in new
chr8	56540388	56540434	ENSG00000253139.1|AC013644.1|lncRNA|chr8:56540388:56540434:-	0	-
#Deleted in new
chr8	56550317	56552067	ENSG00000254254.5|AC012349.1|lncRNA|chr8:56550317:56552067:+	0	+
#Deleted in new
chr8	56559452	56559497	ENSG00000246430.6|LINC00968|lncRNA|chr8:56559452:56559497:-	0	-
#Deleted in new
chr8	56559452	56559671	ENSG00000246430.6|LINC00968|lncRNA|chr8:56559452:56559671:-	0	-
#Deleted in new
chr8	56559452	56559684	ENSG00000246430.6|LINC00968|lncRNA|chr8:56559452:56559684:-	0	-
#Deleted in new
chr8	56559452	56559793	ENSG00000246430.6|LINC00968|lncRNA|chr8:56559452:56559793:-	0	-
#Deleted in new
chr8	56559452	56559823	ENSG00000246430.6|LINC00968|lncRNA|chr8:56559452:56559823:-	0	-
#Deleted in new
chr8	56559557	56559586	ENSG00000246430.6|LINC00968|lncRNA|chr8:56559557:56559586:-	0	-
#Deleted in new
chr8	56639900	56639952	ENSG00000254055.1|AC009597.1|lncRNA|chr8:56639900:56639952:-	0	-
#Deleted in new
chr8	5664703	5665189	ENSG00000254007.1|AC084768.1|lncRNA|chr8:5664703:5665189:-	0	-
#Deleted in new
chr8	56654907	56655049	ENSG00000254055.1|AC009597.1|lncRNA|chr8:56654907:56655049:-	0	-
#Deleted in new
chr8	56656291	56656465	ENSG00000254055.1|AC009597.1|lncRNA|chr8:56656291:56656465:-	0	-
#Deleted in new
chr8	5669948	5670077	ENSG00000254007.1|AC084768.1|lncRNA|chr8:5669948:5670077:-	0	-
#Deleted in new
chr8	57193589	57193689	ENSG00000253301.5|LINC01606|lncRNA|chr8:57193589:57193689:+	0	+
#Deleted in new
chr8	57193593	57193689	ENSG00000253301.5|LINC01606|lncRNA|chr8:57193593:57193689:+	0	+
#Deleted in new
chr8	57193619	57193716	ENSG00000253301.5|LINC01606|lncRNA|chr8:57193619:57193716:+	0	+
#Deleted in new
chr8	57201016	57201088	ENSG00000253301.5|LINC01606|lncRNA|chr8:57201016:57201088:+	0	+
#Deleted in new
chr8	57202918	57203168	ENSG00000253301.5|LINC01606|lncRNA|chr8:57202918:57203168:+	0	+
#Deleted in new
chr8	57208008	57208204	ENSG00000253301.5|LINC01606|lncRNA|chr8:57208008:57208204:+	0	+
#Deleted in new
chr8	57208498	57208632	ENSG00000253301.5|LINC01606|lncRNA|chr8:57208498:57208632:+	0	+
#Deleted in new
chr8	57218275	57218352	ENSG00000253301.5|LINC01606|lncRNA|chr8:57218275:57218352:+	0	+
#Deleted in new
chr8	57218533	57218695	ENSG00000253301.5|LINC01606|lncRNA|chr8:57218533:57218695:+	0	+
#Deleted in new
chr8	57218602	57218695	ENSG00000253301.5|LINC01606|lncRNA|chr8:57218602:57218695:+	0	+
#Deleted in new
chr8	57219055	57219138	ENSG00000253301.5|LINC01606|lncRNA|chr8:57219055:57219138:+	0	+
#Deleted in new
chr8	57219088	57219138	ENSG00000253301.5|LINC01606|lncRNA|chr8:57219088:57219138:+	0	+
#Deleted in new
chr8	57219378	57219623	ENSG00000253301.5|LINC01606|lncRNA|chr8:57219378:57219623:+	0	+
#Deleted in new
chr8	57219409	57219442	ENSG00000253301.5|LINC01606|lncRNA|chr8:57219409:57219442:+	0	+
#Deleted in new
chr8	57219409	57219523	ENSG00000253301.5|LINC01606|lncRNA|chr8:57219409:57219523:+	0	+
#Deleted in new
chr8	57219409	57219567	ENSG00000253301.5|LINC01606|lncRNA|chr8:57219409:57219567:+	0	+
#Deleted in new
chr8	57219409	57219623	ENSG00000253301.5|LINC01606|lncRNA|chr8:57219409:57219623:+	0	+
#Deleted in new
chr8	57220110	57220236	ENSG00000253301.5|LINC01606|lncRNA|chr8:57220110:57220236:+	0	+
#Deleted in new
chr8	57220110	57220295	ENSG00000253301.5|LINC01606|lncRNA|chr8:57220110:57220295:+	0	+
#Deleted in new
chr8	57220588	57220738	ENSG00000253301.5|LINC01606|lncRNA|chr8:57220588:57220738:+	0	+
#Deleted in new
chr8	57221398	57221607	ENSG00000253301.5|LINC01606|lncRNA|chr8:57221398:57221607:+	0	+
#Deleted in new
chr8	57222168	57222271	ENSG00000253301.5|LINC01606|lncRNA|chr8:57222168:57222271:+	0	+
#Deleted in new
chr8	57222594	57222696	ENSG00000253301.5|LINC01606|lncRNA|chr8:57222594:57222696:+	0	+
#Deleted in new
chr8	57229544	57229728	ENSG00000253301.5|LINC01606|lncRNA|chr8:57229544:57229728:+	0	+
#Deleted in new
chr8	57261225	57261339	ENSG00000253614.1|AC025674.2|lncRNA|chr8:57261225:57261339:+	0	+
#Deleted in new
chr8	57261533	57263117	ENSG00000253614.1|AC025674.2|lncRNA|chr8:57261533:57263117:+	0	+
#Deleted in new
chr8	57265340	57266613	ENSG00000253614.1|AC025674.2|lncRNA|chr8:57265340:57266613:+	0	+
#Partially deleted in new
chr8	57279542	57280764	ENSG00000215117.5|LINC00588|lncRNA|chr8:57279542:57280764:+	0	+
#Deleted in new
chr8	57281970	57282214	ENSG00000215117.5|LINC00588|lncRNA|chr8:57281970:57282214:+	0	+
#Deleted in new
chr8	57344930	57345140	ENSG00000253871.1|AC068075.1|lncRNA|chr8:57344930:57345140:+	0	+
#Deleted in new
chr8	57344963	57345140	ENSG00000253871.1|AC068075.1|lncRNA|chr8:57344963:57345140:+	0	+
#Deleted in new
chr8	57346693	57346843	ENSG00000253871.1|AC068075.1|lncRNA|chr8:57346693:57346843:+	0	+
#Deleted in new
chr8	57346693	57347063	ENSG00000253871.1|AC068075.1|lncRNA|chr8:57346693:57347063:+	0	+
#Deleted in new
chr8	57347221	57347408	ENSG00000253871.1|AC068075.1|lncRNA|chr8:57347221:57347408:+	0	+
#Deleted in new
chr8	57348368	57348586	ENSG00000253871.1|AC068075.1|lncRNA|chr8:57348368:57348586:+	0	+
#Deleted in new
chr8	57352459	57352577	ENSG00000253871.1|AC068075.1|lncRNA|chr8:57352459:57352577:+	0	+
#Deleted in new
chr8	57353270	57353408	ENSG00000253871.1|AC068075.1|lncRNA|chr8:57353270:57353408:+	0	+
#Deleted in new
chr8	57357445	57357524	ENSG00000253871.1|AC068075.1|lncRNA|chr8:57357445:57357524:+	0	+
#Deleted in new
chr8	57364541	57364857	ENSG00000253871.1|AC068075.1|lncRNA|chr8:57364541:57364857:+	0	+
#Deleted in new
chr8	57492883	57492975	ENSG00000253821.1|AC090796.1|lncRNA|chr8:57492883:57492975:+	0	+
#Deleted in new
chr8	57492898	57492975	ENSG00000253821.1|AC090796.1|lncRNA|chr8:57492898:57492975:+	0	+
#Deleted in new
chr8	57594165	57594462	ENSG00000253322.1|AC104051.1|lncRNA|chr8:57594165:57594462:-	0	-
#Deleted in new
chr8	57746148	57746350	ENSG00000254139.1|AC104051.2|lncRNA|chr8:57746148:57746350:+	0	+
#Partially deleted in new
chr8	57747940	57750199	ENSG00000254139.1|AC104051.2|lncRNA|chr8:57747940:57750199:+	0	+
#Deleted in new
chr8	57786557	57786608	ENSG00000253322.1|AC104051.1|lncRNA|chr8:57786557:57786608:-	0	-
#Deleted in new
chr8	57889575	57890146	ENSG00000253376.1|AC012103.1|lncRNA|chr8:57889575:57890146:-	0	-
#Deleted in new
chr8	57890600	57890809	ENSG00000253376.1|AC012103.1|lncRNA|chr8:57890600:57890809:-	0	-
#Deleted in new
chr8	57978357	57978484	ENSG00000205293.3|LINC01602|lncRNA|chr8:57978357:57978484:+	0	+
#Partially deleted in new
chr8	57982265	57984126	ENSG00000205293.3|LINC01602|lncRNA|chr8:57982265:57984126:+	0	+
#Deleted in new
chr8	58100868	58101007	ENSG00000253116.1|AC027698.1|lncRNA|chr8:58100868:58101007:-	0	-
#Deleted in new
chr8	58189317	58189416	ENSG00000169122.11|FAM110B|pc|chr8:58189317:58189416:+	0	+
#Deleted in new
chr8	58259730	58260024	ENSG00000253281.6|AC092819.1|lncRNA|chr8:58259730:58260024:-	0	-
#Deleted in new
chr8	58259737	58259841	ENSG00000253281.6|AC092819.1|lncRNA|chr8:58259737:58259841:-	0	-
#Deleted in new
chr8	58259747	58260024	ENSG00000253281.6|AC092819.1|lncRNA|chr8:58259747:58260024:-	0	-
#Deleted in new
chr8	58259857	58260024	ENSG00000253281.6|AC092819.1|lncRNA|chr8:58259857:58260024:-	0	-
#Deleted in new
chr8	58260524	58260753	ENSG00000253281.6|AC092819.1|lncRNA|chr8:58260524:58260753:-	0	-
#Deleted in new
chr8	58260672	58260753	ENSG00000253281.6|AC092819.1|lncRNA|chr8:58260672:58260753:-	0	-
#Deleted in new
chr8	58271280	58271547	ENSG00000253281.6|AC092819.1|lncRNA|chr8:58271280:58271547:-	0	-
#Deleted in new
chr8	58413298	58413371	ENSG00000215114.8|UBXN2B|pc|chr8:58413298:58413371:+	0	+
#Partially deleted in new
chr8	58434857	58435106	ENSG00000215114.8|UBXN2B|pc|chr8:58434857:58435106:+	0	+
#Deleted in new
chr8	58552923	58553303	ENSG00000137575.11|SDCBP|pc|chr8:58552923:58553303:+	0	+
#Deleted in new
chr8	58553168	58553303	ENSG00000137575.11|SDCBP|pc|chr8:58553168:58553303:+	0	+
#Deleted in new
chr8	58553215	58553303	ENSG00000137575.11|SDCBP|pc|chr8:58553215:58553303:+	0	+
#Deleted in new
chr8	58553216	58553303	ENSG00000137575.11|SDCBP|pc|chr8:58553216:58553303:+	0	+
#Deleted in new
chr8	58553236	58553303	ENSG00000137575.11|SDCBP|pc|chr8:58553236:58553303:+	0	+
#Deleted in new
chr8	58553253	58553303	ENSG00000137575.11|SDCBP|pc|chr8:58553253:58553303:+	0	+
#Deleted in new
chr8	58553254	58553303	ENSG00000137575.11|SDCBP|pc|chr8:58553254:58553303:+	0	+
#Deleted in new
chr8	58553260	58553303	ENSG00000137575.11|SDCBP|pc|chr8:58553260:58553303:+	0	+
#Deleted in new
chr8	58553261	58553303	ENSG00000137575.11|SDCBP|pc|chr8:58553261:58553303:+	0	+
#Deleted in new
chr8	58560283	58561795	ENSG00000137575.11|SDCBP|pc|chr8:58560283:58561795:+	0	+
#Deleted in new
chr8	58561747	58561795	ENSG00000137575.11|SDCBP|pc|chr8:58561747:58561795:+	0	+
#Deleted in new
chr8	58637233	58637389	ENSG00000035681.7|NSMAF|pc|chr8:58637233:58637389:-	0	-
#Deleted in new
chr8	58639967	58640102	ENSG00000035681.7|NSMAF|pc|chr8:58639967:58640102:-	0	-
#Deleted in new
chr8	58659194	58659214	ENSG00000035681.7|NSMAF|pc|chr8:58659194:58659214:-	0	-
#Partially deleted in new
chr8	58659194	58659534	ENSG00000035681.7|NSMAF|pc|chr8:58659194:58659534:-	0	-
#Deleted in new
chr8	59561326	59561560	ENSG00000253260.1|AC087664.1|lncRNA|chr8:59561326:59561560:-	0	-
#Deleted in new
chr8	59593577	59593701	ENSG00000253260.1|AC087664.1|lncRNA|chr8:59593577:59593701:-	0	-
#Deleted in new
chr8	59606529	59607005	ENSG00000253879.1|AC087664.2|lncRNA|chr8:59606529:59607005:+	0	+
#Deleted in new
chr8	60049586	60049619	ENSG00000254775.1|AC021393.1|lncRNA|chr8:60049586:60049619:+	0	+
#Partially deleted in new
chr8	60058250	60058528	ENSG00000254775.1|AC021393.1|lncRNA|chr8:60058250:60058528:+	0	+
#Deleted in new
chr8	60384587	60384665	ENSG00000251396.6|LINC01301|lncRNA|chr8:60384587:60384665:-	0	-
#Deleted in new
chr8	60385206	60385406	ENSG00000251396.6|LINC01301|lncRNA|chr8:60385206:60385406:-	0	-
#Deleted in new
chr8	6044352	6044525	ENSG00000253880.1|AC009435.1|lncRNA|chr8:6044352:6044525:-	0	-
#Deleted in new
chr8	60516597	60516780	ENSG00000251396.6|LINC01301|lncRNA|chr8:60516597:60516780:-	0	-
#Deleted in new
chr8	60516597	60516795	ENSG00000251396.6|LINC01301|lncRNA|chr8:60516597:60516795:-	0	-
#Deleted in new
chr8	60551956	60551977	ENSG00000255321.1|AC068389.4|lncRNA|chr8:60551956:60551977:-	0	-
#Deleted in new
chr8	60552368	60553036	ENSG00000255321.1|AC068389.4|lncRNA|chr8:60552368:60553036:-	0	-
#Deleted in new
chr8	60569928	60570057	ENSG00000104388.14|RAB2A|pc|chr8:60569928:60570057:+	0	+
#Deleted in new
chr8	60569954	60570057	ENSG00000104388.14|RAB2A|pc|chr8:60569954:60570057:+	0	+
#Deleted in new
chr8	60576233	60576297	ENSG00000104388.14|RAB2A|pc|chr8:60576233:60576297:+	0	+
#Deleted in new
chr8	60631508	60631907	ENSG00000228862.3|AC068389.1|lncRNA|chr8:60631508:60631907:-	0	-
#Deleted in new
chr8	60631554	60631907	ENSG00000228862.3|AC068389.1|lncRNA|chr8:60631554:60631907:-	0	-
#Deleted in new
chr8	60632595	60632771	ENSG00000228862.3|AC068389.1|lncRNA|chr8:60632595:60632771:-	0	-
#Partially deleted in new
chr8	60633060	60636271	ENSG00000228862.3|AC068389.1|lncRNA|chr8:60633060:60636271:-	0	-
#Deleted in new
chr8	60664366	60664530	ENSG00000255289.1|AC068389.3|lncRNA|chr8:60664366:60664530:+	0	+
#Partially deleted in new
chr8	60965801	60966457	ENSG00000254802.1|AC022182.2|lncRNA|chr8:60965801:60966457:-	0	-
#Deleted in new
chr8	60966169	60966456	ENSG00000254777.5|AC022182.1|lncRNA|chr8:60966169:60966456:+	0	+
#Deleted in new
chr8	60966173	60966557	ENSG00000254777.5|AC022182.1|lncRNA|chr8:60966173:60966557:+	0	+
#Deleted in new
chr8	60967572	60967775	ENSG00000254802.1|AC022182.2|lncRNA|chr8:60967572:60967775:-	0	-
#Deleted in new
chr8	6100327	6100451	ENSG00000253880.1|AC009435.1|lncRNA|chr8:6100327:6100451:-	0	-
#Deleted in new
chr8	61131769	61131860	ENSG00000177182.10|CLVS1|pc|chr8:61131769:61131860:+	0	+
#Deleted in new
chr8	61264623	61264859	ENSG00000254222.1|AC023866.2|lncRNA|chr8:61264623:61264859:-	0	-
#Partially deleted in new
chr8	61273920	61274036	ENSG00000254222.1|AC023866.2|lncRNA|chr8:61273920:61274036:-	0	-
#Deleted in new
chr8	61292004	61292039	ENSG00000254222.1|AC023866.2|lncRNA|chr8:61292004:61292039:-	0	-
#Deleted in new
chr8	61370345	61370666	ENSG00000177182.10|CLVS1|pc|chr8:61370345:61370666:+	0	+
#Deleted in new
chr8	614745	615284	ENSG00000104714.13|ERICH1|pc|chr8:614745:615284:-	0	-
#Deleted in new
chr8	614748	616581	ENSG00000104714.13|ERICH1|pc|chr8:614748:616581:-	0	-
#Partially deleted in new
chr8	61582998	61583535	ENSG00000198363.17|ASPH|pc|chr8:61582998:61583535:-	0	-
#Deleted in new
chr8	61637946	61637986	ENSG00000198363.17|ASPH|pc|chr8:61637946:61637986:-	0	-
#Deleted in new
chr8	61637946	61637999	ENSG00000198363.17|ASPH|pc|chr8:61637946:61637999:-	0	-
#Deleted in new
chr8	61637946	61638003	ENSG00000198363.17|ASPH|pc|chr8:61637946:61638003:-	0	-
#Deleted in new
chr8	61637946	61638046	ENSG00000198363.17|ASPH|pc|chr8:61637946:61638046:-	0	-
#Deleted in new
chr8	61637968	61638003	ENSG00000198363.17|ASPH|pc|chr8:61637968:61638003:-	0	-
#Deleted in new
chr8	616525	616581	ENSG00000104714.13|ERICH1|pc|chr8:616525:616581:-	0	-
#Deleted in new
chr8	61687414	61687700	ENSG00000198363.17|ASPH|pc|chr8:61687414:61687700:-	0	-
#Deleted in new
chr8	61785046	61785156	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61785046:61785156:+	0	+
#Deleted in new
chr8	61821480	61821843	ENSG00000253834.1|AC025524.1|lncRNA|chr8:61821480:61821843:-	0	-
#Partially deleted in new
chr8	61825009	61825252	ENSG00000253834.1|AC025524.1|lncRNA|chr8:61825009:61825252:-	0	-
#Deleted in new
chr8	61827818	61827977	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61827818:61827977:+	0	+
#Deleted in new
chr8	61834872	61834996	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61834872:61834996:+	0	+
#Deleted in new
chr8	61834916	61834996	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61834916:61834996:+	0	+
#Deleted in new
chr8	61834947	61834996	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61834947:61834996:+	0	+
#Deleted in new
chr8	61834955	61834996	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61834955:61834996:+	0	+
#Deleted in new
chr8	61852652	61852776	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61852652:61852776:+	0	+
#Deleted in new
chr8	61852653	61852776	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61852653:61852776:+	0	+
#Deleted in new
chr8	61852658	61852705	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61852658:61852705:+	0	+
#Deleted in new
chr8	61852658	61852765	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61852658:61852765:+	0	+
#Deleted in new
chr8	61852658	61852776	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61852658:61852776:+	0	+
#Deleted in new
chr8	61854382	61854434	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61854382:61854434:+	0	+
#Deleted in new
chr8	61855663	61855852	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61855663:61855852:+	0	+
#Deleted in new
chr8	61861769	61862040	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61861769:61862040:+	0	+
#Deleted in new
chr8	61885285	61885559	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61885285:61885559:+	0	+
#Deleted in new
chr8	61885285	61885562	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61885285:61885562:+	0	+
#Deleted in new
chr8	61889838	61889875	ENSG00000254120.1|LINC02155|lncRNA|chr8:61889838:61889875:+	0	+
#Partially deleted in new
chr8	61892702	61892841	ENSG00000254120.1|LINC02155|lncRNA|chr8:61892702:61892841:+	0	+
#Deleted in new
chr8	61893333	61893474	ENSG00000254120.1|LINC02155|lncRNA|chr8:61893333:61893474:+	0	+
#Deleted in new
chr8	61894116	61894206	ENSG00000254120.1|LINC02155|lncRNA|chr8:61894116:61894206:+	0	+
#Deleted in new
chr8	61922689	61922823	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61922689:61922823:+	0	+
#Deleted in new
chr8	61944138	61944180	ENSG00000254119.5|AC025524.2|lncRNA|chr8:61944138:61944180:+	0	+
#Deleted in new
chr8	62473970	62474269	ENSG00000254050.1|AC018861.2|lncRNA|chr8:62473970:62474269:-	0	-
#Deleted in new
chr8	625674	625968	ENSG00000104714.13|ERICH1|pc|chr8:625674:625968:-	0	-
#Deleted in new
chr8	625674	627238	ENSG00000104714.13|ERICH1|pc|chr8:625674:627238:-	0	-
#Deleted in new
chr8	6257411	6257537	ENSG00000253880.1|AC009435.1|lncRNA|chr8:6257411:6257537:-	0	-
#Deleted in new
chr8	627002	627238	ENSG00000104714.13|ERICH1|pc|chr8:627002:627238:-	0	-
#Deleted in new
chr8	62990167	62991069	ENSG00000185942.11|NKAIN3|pc|chr8:62990167:62991069:+	0	+
#Deleted in new
chr8	62999230	62999652	ENSG00000185942.11|NKAIN3|pc|chr8:62999230:62999652:+	0	+
#Deleted in new
chr8	63025247	63025294	ENSG00000253121.1|AC120042.2|lncRNA|chr8:63025247:63025294:+	0	+
#Deleted in new
chr8	63048552	63048603	ENSG00000137561.4|TTPA|pc|chr8:63048552:63048603:-	0	-
#Partially deleted in new
chr8	63167724	63168442	ENSG00000270673.1|YTHDF3-AS1|lncRNA|chr8:63167724:63168442:-	0	-
#Deleted in new
chr8	63188734	63189042	ENSG00000185728.16|YTHDF3|pc|chr8:63188734:63189042:+	0	+
#Partially deleted in new
chr8	63384838	63385906	ENSG00000253205.5|AC011124.1|lncRNA|chr8:63384838:63385906:-	0	-
#Deleted in new
chr8	63413110	63413251	ENSG00000253205.5|AC011124.1|lncRNA|chr8:63413110:63413251:-	0	-
#Deleted in new
chr8	63413632	63413717	ENSG00000253205.5|AC011124.1|lncRNA|chr8:63413632:63413717:-	0	-
#Deleted in new
chr8	63417102	63417293	ENSG00000253205.5|AC011124.1|lncRNA|chr8:63417102:63417293:-	0	-
#Deleted in new
chr8	63417102	63417355	ENSG00000253205.5|AC011124.1|lncRNA|chr8:63417102:63417355:-	0	-
#Deleted in new
chr8	63417439	63417930	ENSG00000253205.5|AC011124.1|lncRNA|chr8:63417439:63417930:-	0	-
#Deleted in new
chr8	63432885	63432951	ENSG00000253205.5|AC011124.1|lncRNA|chr8:63432885:63432951:-	0	-
#Deleted in new
chr8	63433822	63434009	ENSG00000253205.5|AC011124.1|lncRNA|chr8:63433822:63434009:-	0	-
#Deleted in new
chr8	63461478	63461543	ENSG00000253205.5|AC011124.1|lncRNA|chr8:63461478:63461543:-	0	-
#Deleted in new
chr8	63461478	63461550	ENSG00000253205.5|AC011124.1|lncRNA|chr8:63461478:63461550:-	0	-
#Deleted in new
chr8	63465848	63465997	ENSG00000253894.1|AC011124.2|lncRNA|chr8:63465848:63465997:+	0	+
#Deleted in new
chr8	63466224	63466499	ENSG00000253205.5|AC011124.1|lncRNA|chr8:63466224:63466499:-	0	-
#Deleted in new
chr8	63471838	63471890	ENSG00000253894.1|AC011124.2|lncRNA|chr8:63471838:63471890:+	0	+
#Deleted in new
chr8	63472369	63472502	ENSG00000253894.1|AC011124.2|lncRNA|chr8:63472369:63472502:+	0	+
#Deleted in new
chr8	63472369	63472644	ENSG00000253894.1|AC011124.2|lncRNA|chr8:63472369:63472644:+	0	+
#Deleted in new
chr8	63472385	63472648	ENSG00000253894.1|AC011124.2|lncRNA|chr8:63472385:63472648:+	0	+
#Deleted in new
chr8	63587337	63587396	ENSG00000253583.1|AC018953.1|lncRNA|chr8:63587337:63587396:+	0	+
#Partially deleted in new
chr8	63588822	63589408	ENSG00000253583.1|AC018953.1|lncRNA|chr8:63588822:63589408:+	0	+
#Deleted in new
chr8	63728773	63729008	ENSG00000253554.5|AC022639.1|lncRNA|chr8:63728773:63729008:-	0	-
#Partially deleted in new
chr8	63747605	63747755	ENSG00000253762.1|AC069133.1|lncRNA|chr8:63747605:63747755:+	0	+
#Deleted in new
chr8	637535	637595	ENSG00000104714.13|ERICH1|pc|chr8:637535:637595:-	0	-
#Deleted in new
chr8	63769429	63769845	ENSG00000253734.1|LINC01289|lncRNA|chr8:63769429:63769845:+	0	+
#Deleted in new
chr8	63848896	63848995	ENSG00000253554.5|AC022639.1|lncRNA|chr8:63848896:63848995:-	0	-
#Partially deleted in new
chr8	6403550	6405120	ENSG00000246089.3|AC016065.1|lncRNA|chr8:6403550:6405120:-	0	-
#Deleted in new
chr8	6405405	6406542	ENSG00000246089.3|AC016065.1|lncRNA|chr8:6405405:6406542:-	0	-
#Deleted in new
chr8	6405596	6406371	ENSG00000246089.3|AC016065.1|lncRNA|chr8:6405596:6406371:-	0	-
#Deleted in new
chr8	6405705	6406548	ENSG00000246089.3|AC016065.1|lncRNA|chr8:6405705:6406548:-	0	-
#Deleted in new
chr8	640582	640632	ENSG00000104714.13|ERICH1|pc|chr8:640582:640632:-	0	-
#Deleted in new
chr8	640582	640834	ENSG00000104714.13|ERICH1|pc|chr8:640582:640834:-	0	-
#Deleted in new
chr8	6406527	6406708	ENSG00000246089.3|AC016065.1|lncRNA|chr8:6406527:6406708:-	0	-
#Deleted in new
chr8	6406591	6406689	ENSG00000147316.12|MCPH1|pc|chr8:6406591:6406689:+	0	+
#Deleted in new
chr8	6406595	6406689	ENSG00000147316.12|MCPH1|pc|chr8:6406595:6406689:+	0	+
#Deleted in new
chr8	6406642	6406689	ENSG00000147316.12|MCPH1|pc|chr8:6406642:6406689:+	0	+
#Deleted in new
chr8	6407081	6407142	ENSG00000246089.3|AC016065.1|lncRNA|chr8:6407081:6407142:-	0	-
#Deleted in new
chr8	641113	641207	ENSG00000104714.13|ERICH1|pc|chr8:641113:641207:-	0	-
#Deleted in new
chr8	64133447	64133514	ENSG00000253554.5|AC022639.1|lncRNA|chr8:64133447:64133514:-	0	-
#Deleted in new
chr8	64151092	64151164	ENSG00000253554.5|AC022639.1|lncRNA|chr8:64151092:64151164:-	0	-
#Deleted in new
chr8	64151105	64151164	ENSG00000253554.5|AC022639.1|lncRNA|chr8:64151105:64151164:-	0	-
#Deleted in new
chr8	64166974	64167027	ENSG00000253554.5|AC022639.1|lncRNA|chr8:64166974:64167027:-	0	-
#Deleted in new
chr8	64239833	64240282	ENSG00000253554.5|AC022639.1|lncRNA|chr8:64239833:64240282:-	0	-
#Deleted in new
chr8	64240439	64240506	ENSG00000253554.5|AC022639.1|lncRNA|chr8:64240439:64240506:-	0	-
#Deleted in new
chr8	64728872	64728991	ENSG00000254330.1|AC104232.2|lncRNA|chr8:64728872:64728991:-	0	-
#Deleted in new
chr8	64732838	64732944	ENSG00000254330.1|AC104232.2|lncRNA|chr8:64732838:64732944:-	0	-
#Deleted in new
chr8	64734343	64734459	ENSG00000254330.1|AC104232.2|lncRNA|chr8:64734343:64734459:-	0	-
#Deleted in new
chr8	6477265	6477307	ENSG00000147316.12|MCPH1|pc|chr8:6477265:6477307:+	0	+
#Deleted in new
chr8	64801235	64801526	ENSG00000254006.5|AC104232.1|lncRNA|chr8:64801235:64801526:-	0	-
#Deleted in new
chr8	64801357	64801526	ENSG00000254006.5|AC104232.1|lncRNA|chr8:64801357:64801526:-	0	-
#Deleted in new
chr8	64802367	64802485	ENSG00000254006.5|AC104232.1|lncRNA|chr8:64802367:64802485:-	0	-
#Deleted in new
chr8	64804172	64804278	ENSG00000254006.5|AC104232.1|lncRNA|chr8:64804172:64804278:-	0	-
#Deleted in new
chr8	64805588	64805698	ENSG00000254006.5|AC104232.1|lncRNA|chr8:64805588:64805698:-	0	-
#Deleted in new
chr8	64805588	64805700	ENSG00000254006.5|AC104232.1|lncRNA|chr8:64805588:64805700:-	0	-
#Deleted in new
chr8	64817323	64817573	ENSG00000254006.5|AC104232.1|lncRNA|chr8:64817323:64817573:-	0	-
#Deleted in new
chr8	6494123	6494542	ENSG00000147316.12|MCPH1|pc|chr8:6494123:6494542:+	0	+
#Partially deleted in new
chr8	6507572	6509062	ENSG00000091879.13|ANGPT2|pc|chr8:6507572:6509062:-	0	-
#Partially deleted in new
chr8	65172333	65172512	ENSG00000280725.1|LINC00251|lncRNA|chr8:65172333:65172512:-	0	-
#Deleted in new
chr8	65175672	65175779	ENSG00000280725.1|LINC00251|lncRNA|chr8:65175672:65175779:-	0	-
#Deleted in new
chr8	65527007	65527585	ENSG00000254081.1|LINC01299|lncRNA|chr8:65527007:65527585:-	0	-
#Deleted in new
chr8	65530575	65530609	ENSG00000254081.1|LINC01299|lncRNA|chr8:65530575:65530609:-	0	-
#Deleted in new
chr8	65534727	65534864	ENSG00000254081.1|LINC01299|lncRNA|chr8:65534727:65534864:-	0	-
#Deleted in new
chr8	65562605	65562780	ENSG00000254081.1|LINC01299|lncRNA|chr8:65562605:65562780:-	0	-
#Deleted in new
chr8	65591849	65592472	ENSG00000272010.1|AC100814.1|lncRNA|chr8:65591849:65592472:-	0	-
#Deleted in new
chr8	65679502	65679650	ENSG00000066855.15|MTFR1|pc|chr8:65679502:65679650:+	0	+
#Deleted in new
chr8	65720403	65720596	ENSG00000066855.15|MTFR1|pc|chr8:65720403:65720596:+	0	+
#Deleted in new
chr8	65728360	65728603	ENSG00000066855.15|MTFR1|pc|chr8:65728360:65728603:+	0	+
#Deleted in new
chr8	65731560	65731631	ENSG00000205268.10|PDE7A|pc|chr8:65731560:65731631:-	0	-
#Deleted in new
chr8	65765543	65765672	ENSG00000205268.10|PDE7A|pc|chr8:65765543:65765672:-	0	-
#Deleted in new
chr8	66112666	66112899	ENSG00000253190.3|AC084082.1|lncRNA|chr8:66112666:66112899:+	0	+
#Deleted in new
chr8	6618474	6619202	ENSG00000249898.7|MCPH1-AS1|lncRNA|chr8:6618474:6619202:-	0	-
#Deleted in new
chr8	66192092	66192198	ENSG00000253138.5|LINC00967|lncRNA|chr8:66192092:66192198:+	0	+
#Deleted in new
chr8	66192110	66192967	ENSG00000253138.5|LINC00967|lncRNA|chr8:66192110:66192967:+	0	+
#Deleted in new
chr8	66192114	66192198	ENSG00000253138.5|LINC00967|lncRNA|chr8:66192114:66192198:+	0	+
#Deleted in new
chr8	66192708	66192967	ENSG00000253138.5|LINC00967|lncRNA|chr8:66192708:66192967:+	0	+
#Deleted in new
chr8	66192832	66192967	ENSG00000253138.5|LINC00967|lncRNA|chr8:66192832:66192967:+	0	+
#Deleted in new
chr8	66192832	66192971	ENSG00000253138.5|LINC00967|lncRNA|chr8:66192832:66192971:+	0	+
#Partially deleted in new
chr8	66196015	66196390	ENSG00000253138.5|LINC00967|lncRNA|chr8:66196015:66196390:+	0	+
#Deleted in new
chr8	6634841	6635419	ENSG00000249898.7|MCPH1-AS1|lncRNA|chr8:6634841:6635419:-	0	-
#Deleted in new
chr8	6634945	6635419	ENSG00000249898.7|MCPH1-AS1|lncRNA|chr8:6634945:6635419:-	0	-
#Split in new
chr8	66419588	66423782	ENSG00000246145.1|RRS1-AS1|lncRNA|chr8:66419588:66423782:-	0	-
#Deleted in new
chr8	66426041	66426177	ENSG00000246145.1|RRS1-AS1|lncRNA|chr8:66426041:66426177:-	0	-
#Partially deleted in new
chr8	6642993	6648504	ENSG00000147316.12|MCPH1|pc|chr8:6642993:6648504:+	0	+
#Deleted in new
chr8	66459523	66459578	ENSG00000147576.15|ADHFE1|pc|chr8:66459523:66459578:+	0	+
#Deleted in new
chr8	66474792	66474939	ENSG00000169085.11|C8orf46|pc|chr8:66474792:66474939:+	0	+
#Deleted in new
chr8	6648282	6648807	ENSG00000249898.7|MCPH1-AS1|lncRNA|chr8:6648282:6648807:-	0	-
#Deleted in new
chr8	66498824	66498918	ENSG00000169085.11|C8orf46|pc|chr8:66498824:66498918:+	0	+
#Deleted in new
chr8	66503404	66503525	ENSG00000169085.11|C8orf46|pc|chr8:66503404:66503525:+	0	+
#Deleted in new
chr8	66514164	66514291	ENSG00000169085.11|C8orf46|pc|chr8:66514164:66514291:+	0	+
#Partially deleted in new
chr8	665991	668792	ENSG00000104714.13|ERICH1|pc|chr8:665991:668792:-	0	-
#Deleted in new
chr8	66676218	66676284	ENSG00000213865.7|C8orf44|pc|chr8:66676218:66676284:+	0	+
#Deleted in new
chr8	66676744	66676902	ENSG00000213865.7|C8orf44|pc|chr8:66676744:66676902:+	0	+
#Deleted in new
chr8	66677641	66677954	ENSG00000213865.7|C8orf44|pc|chr8:66677641:66677954:+	0	+
#Deleted in new
chr8	66678218	66678295	ENSG00000213865.7|C8orf44|pc|chr8:66678218:66678295:+	0	+
#Deleted in new
chr8	66685380	66685560	ENSG00000213865.7|C8orf44|pc|chr8:66685380:66685560:+	0	+
#Deleted in new
chr8	66685380	66685564	ENSG00000213865.7|C8orf44|pc|chr8:66685380:66685564:+	0	+
#Deleted in new
chr8	66690704	66690760	ENSG00000270024.5|C8orf44-SGK3|pc|chr8:66690704:66690760:+	0	+
#Deleted in new
chr8	66737225	66737666	ENSG00000104205.12|SGK3|pc|chr8:66737225:66737666:+	0	+
#Partially deleted in new
chr8	66919002	66922048	ENSG00000178460.17|MCMDC2|pc|chr8:66919002:66922048:+	0	+
#Deleted in new
chr8	66925436	66925541	ENSG00000245910.8|SNHG6|lncRNA|chr8:66925436:66925541:-	0	-
#Deleted in new
chr8	66925436	66925596	ENSG00000245910.8|SNHG6|lncRNA|chr8:66925436:66925596:-	0	-
#Deleted in new
chr8	66926197	66926398	ENSG00000245910.8|SNHG6|lncRNA|chr8:66926197:66926398:-	0	-
#Deleted in new
chr8	66954978	66955117	ENSG00000261787.1|TCF24|pc|chr8:66954978:66955117:-	0	-
#Deleted in new
chr8	66961876	66961987	ENSG00000261787.1|TCF24|pc|chr8:66961876:66961987:-	0	-
#Deleted in new
chr8	67026880	67027031	ENSG00000178125.14|PPP1R42|pc|chr8:67026880:67027031:-	0	-
#Deleted in new
chr8	67047684	67047859	ENSG00000121022.13|COPS5|pc|chr8:67047684:67047859:-	0	-
#Deleted in new
chr8	67047767	67047859	ENSG00000121022.13|COPS5|pc|chr8:67047767:67047859:-	0	-
#Partially deleted in new
chr8	67061291	67061422	ENSG00000121022.13|COPS5|pc|chr8:67061291:67061422:-	0	-
#Deleted in new
chr8	67061343	67061422	ENSG00000121022.13|COPS5|pc|chr8:67061343:67061422:-	0	-
#Deleted in new
chr8	67069099	67069203	ENSG00000121022.13|COPS5|pc|chr8:67069099:67069203:-	0	-
#Deleted in new
chr8	67074805	67074923	ENSG00000104218.14|CSPP1|pc|chr8:67074805:67074923:+	0	+
#Deleted in new
chr8	67080881	67081096	ENSG00000121022.13|COPS5|pc|chr8:67080881:67081096:-	0	-
#Partially deleted in new
chr8	67083847	67084338	ENSG00000104218.14|CSPP1|pc|chr8:67083847:67084338:+	0	+
#Deleted in new
chr8	67123087	67123159	ENSG00000104218.14|CSPP1|pc|chr8:67123087:67123159:+	0	+
#Deleted in new
chr8	67157626	67157857	ENSG00000104218.14|CSPP1|pc|chr8:67157626:67157857:+	0	+
#Deleted in new
chr8	67172768	67172973	ENSG00000104218.14|CSPP1|pc|chr8:67172768:67172973:+	0	+
#Partially deleted in new
chr8	67173510	67175572	ENSG00000066777.8|ARFGEF1|pc|chr8:67173510:67175572:-	0	-
#Deleted in new
chr8	671793	672204	ENSG00000104714.13|ERICH1|pc|chr8:671793:672204:-	0	-
#Duplicated in new
chr8	673288	673462	ENSG00000104714.13|ERICH1|pc|chr8:673288:673462:-	0	-
#Duplicated in new
chr8	673288	673657	ENSG00000104714.13|ERICH1|pc|chr8:673288:673657:-	0	-
#Duplicated in new
chr8	673288	674047	ENSG00000104714.13|ERICH1|pc|chr8:673288:674047:-	0	-
#Deleted in new
chr8	6738375	6738550	ENSG00000155189.11|AGPAT5|pc|chr8:6738375:6738550:+	0	+
#Deleted in new
chr8	67452292	67452650	ENSG00000165078.12|CPA6|pc|chr8:67452292:67452650:-	0	-
#Deleted in new
chr8	6745754	6746241	ENSG00000155189.11|AGPAT5|pc|chr8:6745754:6746241:+	0	+
#Partially deleted in new
chr8	68105137	68106007	ENSG00000046889.18|PREX2|pc|chr8:68105137:68106007:+	0	+
#Deleted in new
chr8	68110931	68111089	ENSG00000046889.18|PREX2|pc|chr8:68110931:68111089:+	0	+
#Deleted in new
chr8	68303467	68304801	ENSG00000248801.6|C8orf34-AS1|lncRNA|chr8:68303467:68304801:-	0	-
#Deleted in new
chr8	68304631	68304801	ENSG00000248801.6|C8orf34-AS1|lncRNA|chr8:68304631:68304801:-	0	-
#Deleted in new
chr8	68306517	68306598	ENSG00000248801.6|C8orf34-AS1|lncRNA|chr8:68306517:68306598:-	0	-
#Deleted in new
chr8	68312143	68312217	ENSG00000248801.6|C8orf34-AS1|lncRNA|chr8:68312143:68312217:-	0	-
#Deleted in new
chr8	6841667	6842457	ENSG00000245857.2|GS1-24F4.2|lncRNA|chr8:6841667:6842457:+	0	+
#Deleted in new
chr8	6841910	6841967	ENSG00000245857.2|GS1-24F4.2|lncRNA|chr8:6841910:6841967:+	0	+
#Partially deleted in new
chr8	68446328	68448010	ENSG00000165084.15|C8orf34|pc|chr8:68446328:68448010:+	0	+
#Deleted in new
chr8	6844761	6844929	ENSG00000245857.2|GS1-24F4.2|lncRNA|chr8:6844761:6844929:+	0	+
#Deleted in new
chr8	68530592	68530679	ENSG00000165084.15|C8orf34|pc|chr8:68530592:68530679:+	0	+
#Deleted in new
chr8	686641	686724	ENSG00000104714.13|ERICH1|pc|chr8:686641:686724:-	0	-
#Partially deleted in new
chr8	68790990	68792571	ENSG00000165084.15|C8orf34|pc|chr8:68790990:68792571:+	0	+
#Deleted in new
chr8	68848741	68849098	ENSG00000254337.1|AC083967.1|lncRNA|chr8:68848741:68849098:-	0	-
#Deleted in new
chr8	68849950	68850045	ENSG00000254337.1|AC083967.1|lncRNA|chr8:68849950:68850045:-	0	-
#Deleted in new
chr8	6885121	6885276	ENSG00000245857.2|GS1-24F4.2|lncRNA|chr8:6885121:6885276:+	0	+
#Deleted in new
chr8	68852700	68852763	ENSG00000254337.1|AC083967.1|lncRNA|chr8:68852700:68852763:-	0	-
#Deleted in new
chr8	68954057	68954162	ENSG00000253658.5|LINC01592|lncRNA|chr8:68954057:68954162:-	0	-
#Deleted in new
chr8	69001383	69001487	ENSG00000253658.5|LINC01592|lncRNA|chr8:69001383:69001487:-	0	-
#Deleted in new
chr8	69001383	69001512	ENSG00000253658.5|LINC01592|lncRNA|chr8:69001383:69001512:-	0	-
#Deleted in new
chr8	69068327	69068549	ENSG00000253658.5|LINC01592|lncRNA|chr8:69068327:69068549:-	0	-
#Partially deleted in new
chr8	690897	691096	ENSG00000104714.13|ERICH1|pc|chr8:690897:691096:-	0	-
#Partially deleted in new
chr8	69176649	69176814	ENSG00000253373.1|AC021785.1|lncRNA|chr8:69176649:69176814:-	0	-
#Deleted in new
chr8	6929337	6929461	ENSG00000254625.1|AF233439.1|lncRNA|chr8:6929337:6929461:+	0	+
#Deleted in new
chr8	6930339	6930473	ENSG00000254625.1|AF233439.1|lncRNA|chr8:6930339:6930473:+	0	+
#Deleted in new
chr8	69425034	69425721	ENSG00000253479.5|LINC01603|lncRNA|chr8:69425034:69425721:-	0	-
#Deleted in new
chr8	69425621	69425721	ENSG00000253479.5|LINC01603|lncRNA|chr8:69425621:69425721:-	0	-
#Deleted in new
chr8	69429975	69430048	ENSG00000253479.5|LINC01603|lncRNA|chr8:69429975:69430048:-	0	-
#Deleted in new
chr8	69584453	69584569	ENSG00000137573.13|SULF1|pc|chr8:69584453:69584569:+	0	+
#Deleted in new
chr8	69625953	69626072	ENSG00000137573.13|SULF1|pc|chr8:69625953:69626072:+	0	+
#Deleted in new
chr8	69642223	69642296	ENSG00000137573.13|SULF1|pc|chr8:69642223:69642296:+	0	+
#Deleted in new
chr8	69642223	69642398	ENSG00000137573.13|SULF1|pc|chr8:69642223:69642398:+	0	+
#Partially deleted in new
chr8	69713389	69713818	ENSG00000254557.1|AC091047.1|lncRNA|chr8:69713389:69713818:+	0	+
#Deleted in new
chr8	69719676	69719722	ENSG00000254557.1|AC091047.1|lncRNA|chr8:69719676:69719722:+	0	+
#Deleted in new
chr8	69836638	69837370	ENSG00000246528.3|AC079089.1|lncRNA|chr8:69836638:69837370:+	0	+
#Deleted in new
chr8	69836638	69837829	ENSG00000246528.3|AC079089.1|lncRNA|chr8:69836638:69837829:+	0	+
#Deleted in new
chr8	69843298	69843397	ENSG00000246528.3|AC079089.1|lncRNA|chr8:69843298:69843397:+	0	+
#Deleted in new
chr8	69843301	69843397	ENSG00000246528.3|AC079089.1|lncRNA|chr8:69843301:69843397:+	0	+
#Deleted in new
chr8	69938167	69938400	ENSG00000280393.1|AC090574.1|lncRNA|chr8:69938167:69938400:+	0	+
#Partially deleted in new
chr8	70071594	70071693	ENSG00000147596.3|PRDM14|pc|chr8:70071594:70071693:-	0	-
#Deleted in new
chr8	70471111	70471144	ENSG00000253143.3|AC022730.3|lncRNA|chr8:70471111:70471144:-	0	-
#Deleted in new
chr8	70471133	70471845	ENSG00000253967.1|AC022730.4|lncRNA|chr8:70471133:70471845:+	0	+
#Deleted in new
chr8	70478092	70478163	ENSG00000253967.1|AC022730.4|lncRNA|chr8:70478092:70478163:+	0	+
#Deleted in new
chr8	70587516	70587680	ENSG00000067167.7|TRAM1|pc|chr8:70587516:70587680:-	0	-
#Deleted in new
chr8	70613934	70614012	ENSG00000246366.6|LACTB2-AS1|lncRNA|chr8:70613934:70614012:+	0	+
#Deleted in new
chr8	70615794	70615950	ENSG00000246366.6|LACTB2-AS1|lncRNA|chr8:70615794:70615950:+	0	+
#Deleted in new
chr8	70631104	70631290	ENSG00000246366.6|LACTB2-AS1|lncRNA|chr8:70631104:70631290:+	0	+
#Deleted in new
chr8	70635317	70635385	ENSG00000147592.8|LACTB2|pc|chr8:70635317:70635385:-	0	-
#Deleted in new
chr8	70646044	70646490	ENSG00000246366.6|LACTB2-AS1|lncRNA|chr8:70646044:70646490:+	0	+
#Deleted in new
chr8	70646150	70646709	ENSG00000246366.6|LACTB2-AS1|lncRNA|chr8:70646150:70646709:+	0	+
#Deleted in new
chr8	70651812	70651894	ENSG00000246366.6|LACTB2-AS1|lncRNA|chr8:70651812:70651894:+	0	+
#Deleted in new
chr8	70652510	70652752	ENSG00000246366.6|LACTB2-AS1|lncRNA|chr8:70652510:70652752:+	0	+
#Deleted in new
chr8	70652534	70652752	ENSG00000246366.6|LACTB2-AS1|lncRNA|chr8:70652534:70652752:+	0	+
#Deleted in new
chr8	70670572	70670661	ENSG00000221947.7|XKR9|pc|chr8:70670572:70670661:+	0	+
#Deleted in new
chr8	70678029	70678139	ENSG00000221947.7|XKR9|pc|chr8:70678029:70678139:+	0	+
#Deleted in new
chr8	70683512	70683630	ENSG00000221947.7|XKR9|pc|chr8:70683512:70683630:+	0	+
#Deleted in new
chr8	71155456	71155553	ENSG00000254031.5|AC022858.1|lncRNA|chr8:71155456:71155553:+	0	+
#Deleted in new
chr8	71155521	71155553	ENSG00000254031.5|AC022858.1|lncRNA|chr8:71155521:71155553:+	0	+
#Partially deleted in new
chr8	71470857	71470931	ENSG00000253379.5|AC099805.1|lncRNA|chr8:71470857:71470931:-	0	-
#Deleted in new
chr8	71529406	71529745	ENSG00000253379.5|AC099805.1|lncRNA|chr8:71529406:71529745:-	0	-
#Deleted in new
chr8	71529828	71529937	ENSG00000253379.5|AC099805.1|lncRNA|chr8:71529828:71529937:-	0	-
#Deleted in new
chr8	71547514	71547657	ENSG00000253379.5|AC099805.1|lncRNA|chr8:71547514:71547657:-	0	-
#Deleted in new
chr8	71568172	71568927	ENSG00000253379.5|AC099805.1|lncRNA|chr8:71568172:71568927:-	0	-
#Deleted in new
chr8	71568724	71568767	ENSG00000253379.5|AC099805.1|lncRNA|chr8:71568724:71568767:-	0	-
#Deleted in new
chr8	71568724	71568927	ENSG00000253379.5|AC099805.1|lncRNA|chr8:71568724:71568927:-	0	-
#Deleted in new
chr8	71585118	71585200	ENSG00000253379.5|AC099805.1|lncRNA|chr8:71585118:71585200:-	0	-
#Deleted in new
chr8	71675299	71675535	ENSG00000254277.1|AC009446.1|lncRNA|chr8:71675299:71675535:+	0	+
#Deleted in new
chr8	71675376	71675535	ENSG00000254277.1|AC009446.1|lncRNA|chr8:71675376:71675535:+	0	+
#Deleted in new
chr8	71695940	71696033	ENSG00000254277.1|AC009446.1|lncRNA|chr8:71695940:71696033:+	0	+
#Partially deleted in new
chr8	71702214	71702786	ENSG00000254277.1|AC009446.1|lncRNA|chr8:71702214:71702786:+	0	+
#Deleted in new
chr8	71790128	71790243	ENSG00000253287.1|AC104012.1|lncRNA|chr8:71790128:71790243:-	0	-
#Partially deleted in new
chr8	71792603	71792875	ENSG00000253287.1|AC104012.1|lncRNA|chr8:71792603:71792875:-	0	-
#Deleted in new
chr8	71828166	71828215	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:71828166:71828215:+	0	+
#Deleted in new
chr8	71961933	71962113	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:71961933:71962113:+	0	+
#Deleted in new
chr8	71962921	71963048	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:71962921:71963048:+	0	+
#Deleted in new
chr8	71962922	71963048	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:71962922:71963048:+	0	+
#Deleted in new
chr8	71965408	71965534	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:71965408:71965534:+	0	+
#Deleted in new
chr8	71966741	71966779	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:71966741:71966779:+	0	+
#Partially deleted in new
chr8	71973537	71973659	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:71973537:71973659:+	0	+
#Deleted in new
chr8	72002221	72002405	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:72002221:72002405:+	0	+
#Deleted in new
chr8	72002241	72002394	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:72002241:72002394:+	0	+
#Deleted in new
chr8	72029725	72029773	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:72029725:72029773:+	0	+
#Deleted in new
chr8	72041188	72041345	ENSG00000104321.10|TRPA1|pc|chr8:72041188:72041345:-	0	-
#Deleted in new
chr8	72060362	72060441	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:72060362:72060441:+	0	+
#Deleted in new
chr8	72106860	72106948	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:72106860:72106948:+	0	+
#Deleted in new
chr8	72116717	72116760	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:72116717:72116760:+	0	+
#Deleted in new
chr8	72118236	72118393	ENSG00000235531.9|MSC-AS1|lncRNA|chr8:72118236:72118393:+	0	+
#Deleted in new
chr8	72201771	72202269	ENSG00000253317.1|AC078906.1|lncRNA|chr8:72201771:72202269:+	0	+
#Deleted in new
chr8	72470814	72470972	ENSG00000254347.1|AC011131.1|lncRNA|chr8:72470814:72470972:+	0	+
#Deleted in new
chr8	725187	725402	ENSG00000254207.1|AC100797.1|lncRNA|chr8:725187:725402:-	0	-
#Deleted in new
chr8	725776	725877	ENSG00000254207.1|AC100797.1|lncRNA|chr8:725776:725877:-	0	-
#Deleted in new
chr8	72600	72673	ENSG00000253896.3|AC144568.2|lncRNA|chr8:72600:72673:+	0	+
#Deleted in new
chr8	72616	72701	ENSG00000253896.3|AC144568.2|lncRNA|chr8:72616:72701:+	0	+
#Deleted in new
chr8	72749337	72749405	ENSG00000253726.1|AC013562.1|lncRNA|chr8:72749337:72749405:+	0	+
#Partially deleted in new
chr8	72750246	72751843	ENSG00000253726.1|AC013562.1|lncRNA|chr8:72750246:72751843:+	0	+
#Deleted in new
chr8	72881494	72881595	ENSG00000253784.1|AC090735.1|lncRNA|chr8:72881494:72881595:-	0	-
#Partially deleted in new
chr8	73008907	73012505	ENSG00000147601.13|TERF1|pc|chr8:73008907:73012505:+	0	+
#Deleted in new
chr8	73012856	73012931	ENSG00000147601.13|TERF1|pc|chr8:73012856:73012931:+	0	+
#Deleted in new
chr8	7301610	7302171	ENSG00000215374.5|FAM66B|lncRNA|chr8:7301610:7302171:-	0	-
#Deleted in new
chr8	73038705	73038798	ENSG00000147601.13|TERF1|pc|chr8:73038705:73038798:+	0	+
#Deleted in new
chr8	73038705	73038804	ENSG00000147601.13|TERF1|pc|chr8:73038705:73038804:+	0	+
#Deleted in new
chr8	73042909	73043346	ENSG00000272254.1|AC022893.3|lncRNA|chr8:73042909:73043346:-	0	-
#Partially deleted in new
chr8	73045960	73048122	ENSG00000147601.13|TERF1|pc|chr8:73045960:73048122:+	0	+
#Deleted in new
chr8	73062938	73063061	ENSG00000253636.1|AC022893.1|lncRNA|chr8:73062938:73063061:+	0	+
#Deleted in new
chr8	73083786	73083841	ENSG00000237061.1|AC100823.1|lncRNA|chr8:73083786:73083841:-	0	-
#Deleted in new
chr8	73085454	73085879	ENSG00000237061.1|AC100823.1|lncRNA|chr8:73085454:73085879:-	0	-
#Deleted in new
chr8	73123506	73124088	ENSG00000164764.10|SBSPON|pc|chr8:73123506:73124088:-	0	-
#Deleted in new
chr8	7323099	7323360	ENSG00000215374.5|FAM66B|lncRNA|chr8:7323099:7323360:-	0	-
#Deleted in new
chr8	7323768	7323833	ENSG00000215374.5|FAM66B|lncRNA|chr8:7323768:7323833:-	0	-
#Deleted in new
chr8	7324296	7324364	ENSG00000215374.5|FAM66B|lncRNA|chr8:7324296:7324364:-	0	-
#Deleted in new
chr8	7324821	7324889	ENSG00000215374.5|FAM66B|lncRNA|chr8:7324821:7324889:-	0	-
#Deleted in new
chr8	7324821	7324905	ENSG00000215374.5|FAM66B|lncRNA|chr8:7324821:7324905:-	0	-
#Deleted in new
chr8	7325136	7325198	ENSG00000215374.5|FAM66B|lncRNA|chr8:7325136:7325198:-	0	-
#Deleted in new
chr8	7325136	7325415	ENSG00000215374.5|FAM66B|lncRNA|chr8:7325136:7325415:-	0	-
#Deleted in new
chr8	73345220	73345296	ENSG00000250295.6|RDH10-AS1|lncRNA|chr8:73345220:73345296:-	0	-
#Deleted in new
chr8	73358912	73359045	ENSG00000253339.1|AC111149.2|lncRNA|chr8:73358912:73359045:+	0	+
#Deleted in new
chr8	73358912	73359227	ENSG00000253339.1|AC111149.2|lncRNA|chr8:73358912:73359227:+	0	+
#Deleted in new
chr8	7348972	7349146	ENSG00000215374.5|FAM66B|lncRNA|chr8:7348972:7349146:-	0	-
#Deleted in new
chr8	7349082	7349146	ENSG00000215374.5|FAM66B|lncRNA|chr8:7349082:7349146:-	0	-
#Deleted in new
chr8	73527368	73527804	ENSG00000040341.17|STAU2|pc|chr8:73527368:73527804:-	0	-
#Deleted in new
chr8	73527690	73527804	ENSG00000040341.17|STAU2|pc|chr8:73527690:73527804:-	0	-
#Deleted in new
chr8	7354810	7355339	ENSG00000215374.5|FAM66B|lncRNA|chr8:7354810:7355339:-	0	-
#Deleted in new
chr8	7354810	7355354	ENSG00000215374.5|FAM66B|lncRNA|chr8:7354810:7355354:-	0	-
#Partially deleted in new
chr8	7355516	7358560	ENSG00000215372.6|ZNF705G|pc|chr8:7355516:7358560:-	0	-
#Deleted in new
chr8	73561410	73561539	ENSG00000040341.17|STAU2|pc|chr8:73561410:73561539:-	0	-
#Deleted in new
chr8	7359618	7359701	ENSG00000215372.6|ZNF705G|pc|chr8:7359618:7359701:-	0	-
#Deleted in new
chr8	7360236	7360332	ENSG00000215372.6|ZNF705G|pc|chr8:7360236:7360332:-	0	-
#Deleted in new
chr8	7362934	7363017	ENSG00000215372.6|ZNF705G|pc|chr8:7362934:7363017:-	0	-
#Deleted in new
chr8	73652256	73653896	ENSG00000040341.17|STAU2|pc|chr8:73652256:73653896:-	0	-
#Deleted in new
chr8	73653497	73653896	ENSG00000040341.17|STAU2|pc|chr8:73653497:73653896:-	0	-
#Deleted in new
chr8	73653657	73653896	ENSG00000040341.17|STAU2|pc|chr8:73653657:73653896:-	0	-
#Deleted in new
chr8	73675480	73675572	ENSG00000254538.1|AC027018.1|lncRNA|chr8:73675480:73675572:+	0	+
#Deleted in new
chr8	73697307	73697442	ENSG00000040341.17|STAU2|pc|chr8:73697307:73697442:-	0	-
#Deleted in new
chr8	73727805	73728058	ENSG00000254538.1|AC027018.1|lncRNA|chr8:73727805:73728058:+	0	+
#Deleted in new
chr8	73727842	73727914	ENSG00000254538.1|AC027018.1|lncRNA|chr8:73727842:73727914:+	0	+
#Deleted in new
chr8	73739755	73739868	ENSG00000040341.17|STAU2|pc|chr8:73739755:73739868:-	0	-
#Deleted in new
chr8	73739755	73739868	ENSG00000258677.2|AC022826.2|pc|chr8:73739755:73739868:-	0	-
#Deleted in new
chr8	73742223	73742363	ENSG00000040341.17|STAU2|pc|chr8:73742223:73742363:-	0	-
#Deleted in new
chr8	73780096	73780517	ENSG00000104343.19|UBE2W|pc|chr8:73780096:73780517:-	0	-
#Deleted in new
chr8	73795790	73795914	ENSG00000104343.19|UBE2W|pc|chr8:73795790:73795914:-	0	-
#Deleted in new
chr8	73939168	73941605	ENSG00000154582.16|ELOC|pc|chr8:73939168:73941605:-	0	-
#Deleted in new
chr8	73964486	73964625	ENSG00000154582.16|ELOC|pc|chr8:73964486:73964625:-	0	-
#Deleted in new
chr8	73979078	73979134	ENSG00000175606.10|TMEM70|pc|chr8:73979078:73979134:+	0	+
#Deleted in new
chr8	73979078	73979171	ENSG00000175606.10|TMEM70|pc|chr8:73979078:73979171:+	0	+
#Deleted in new
chr8	74099418	74099853	ENSG00000254288.1|AC087672.3|lncRNA|chr8:74099418:74099853:+	0	+
#Deleted in new
chr8	7414859	7415097	ENSG00000177257.2|DEFB4B|pc|chr8:7414859:7415097:-	0	-
#Deleted in new
chr8	7416769	7416863	ENSG00000177257.2|DEFB4B|pc|chr8:7416769:7416863:-	0	-
#Deleted in new
chr8	74207358	74207493	ENSG00000253983.2|AC087627.1|lncRNA|chr8:74207358:74207493:+	0	+
#Partially deleted in new
chr8	74207720	74208441	ENSG00000253983.2|AC087627.1|lncRNA|chr8:74207720:74208441:+	0	+
#Deleted in new
chr8	74347756	74348205	ENSG00000253596.1|AC103952.1|lncRNA|chr8:74347756:74348205:-	0	-
#Deleted in new
chr8	7442683	7442749	ENSG00000164871.17|SPAG11B|pc|chr8:7442683:7442749:-	0	-
#Deleted in new
chr8	7442853	7443032	ENSG00000164871.17|SPAG11B|pc|chr8:7442853:7443032:-	0	-
#Deleted in new
chr8	74488677	74488872	ENSG00000104381.12|GDAP1|pc|chr8:74488677:74488872:+	0	+
#Deleted in new
chr8	74599774	74599908	ENSG00000254349.5|MIR2052HG|lncRNA|chr8:74599774:74599908:+	0	+
#Deleted in new
chr8	74599780	74599908	ENSG00000254349.5|MIR2052HG|lncRNA|chr8:74599780:74599908:+	0	+
#Deleted in new
chr8	74599865	74599908	ENSG00000254349.5|MIR2052HG|lncRNA|chr8:74599865:74599908:+	0	+
#Deleted in new
chr8	74609697	74610040	ENSG00000254080.1|AC115837.2|lncRNA|chr8:74609697:74610040:-	0	-
#Deleted in new
chr8	74612453	74612566	ENSG00000254080.1|AC115837.2|lncRNA|chr8:74612453:74612566:-	0	-
#Partially deleted in new
chr8	74612852	74612940	ENSG00000254349.5|MIR2052HG|lncRNA|chr8:74612852:74612940:+	0	+
#Deleted in new
chr8	74615075	74615139	ENSG00000254349.5|MIR2052HG|lncRNA|chr8:74615075:74615139:+	0	+
#Deleted in new
chr8	74625248	74625341	ENSG00000254349.5|MIR2052HG|lncRNA|chr8:74625248:74625341:+	0	+
#Deleted in new
chr8	74632449	74632502	ENSG00000254080.1|AC115837.2|lncRNA|chr8:74632449:74632502:-	0	-
#Deleted in new
chr8	74633234	74633320	ENSG00000254080.1|AC115837.2|lncRNA|chr8:74633234:74633320:-	0	-
#Deleted in new
chr8	7470307	7470516	ENSG00000177023.2|DEFB104B|pc|chr8:7470307:7470516:-	0	-
#Deleted in new
chr8	74752440	74752533	ENSG00000254349.5|MIR2052HG|lncRNA|chr8:74752440:74752533:+	0	+
#Deleted in new
chr8	74756606	74758352	ENSG00000254349.5|MIR2052HG|lncRNA|chr8:74756606:74758352:+	0	+
#Deleted in new
chr8	74758110	74758150	ENSG00000254349.5|MIR2052HG|lncRNA|chr8:74758110:74758150:+	0	+
#Deleted in new
chr8	74768035	74768483	ENSG00000254349.5|MIR2052HG|lncRNA|chr8:74768035:74768483:+	0	+
#Deleted in new
chr8	74798783	74799319	ENSG00000253706.5|AC011632.1|lncRNA|chr8:74798783:74799319:-	0	-
#Deleted in new
chr8	74866517	74866634	ENSG00000253706.5|AC011632.1|lncRNA|chr8:74866517:74866634:-	0	-
#Deleted in new
chr8	74866864	74866925	ENSG00000253706.5|AC011632.1|lncRNA|chr8:74866864:74866925:-	0	-
#Deleted in new
chr8	74866864	74866936	ENSG00000253706.5|AC011632.1|lncRNA|chr8:74866864:74866936:-	0	-
#Deleted in new
chr8	74866864	74866939	ENSG00000253706.5|AC011632.1|lncRNA|chr8:74866864:74866939:-	0	-
#Deleted in new
chr8	74891150	74891310	ENSG00000254043.1|AC011632.2|lncRNA|chr8:74891150:74891310:-	0	-
#Deleted in new
chr8	74895724	74896302	ENSG00000254043.1|AC011632.2|lncRNA|chr8:74895724:74896302:-	0	-
#Deleted in new
chr8	75000153	75000409	ENSG00000121005.8|CRISPLD1|pc|chr8:75000153:75000409:+	0	+
#Deleted in new
chr8	75000173	75000409	ENSG00000121005.8|CRISPLD1|pc|chr8:75000173:75000409:+	0	+
#Deleted in new
chr8	75167703	75167911	ENSG00000253712.1|AC022274.1|lncRNA|chr8:75167703:75167911:-	0	-
#Deleted in new
chr8	75176374	75176656	ENSG00000253712.1|AC022274.1|lncRNA|chr8:75176374:75176656:-	0	-
#Deleted in new
chr8	75223403	75224358	ENSG00000249395.2|CASC9|lncRNA|chr8:75223403:75224358:-	0	-
#Deleted in new
chr8	75223702	75224358	ENSG00000249395.2|CASC9|lncRNA|chr8:75223702:75224358:-	0	-
#Deleted in new
chr8	75223768	75224358	ENSG00000249395.2|CASC9|lncRNA|chr8:75223768:75224358:-	0	-
#Deleted in new
chr8	75223897	75224358	ENSG00000249395.2|CASC9|lncRNA|chr8:75223897:75224358:-	0	-
#Deleted in new
chr8	75276986	75277090	ENSG00000249395.2|CASC9|lncRNA|chr8:75276986:75277090:-	0	-
#Deleted in new
chr8	75278356	75278461	ENSG00000249395.2|CASC9|lncRNA|chr8:75278356:75278461:-	0	-
#Deleted in new
chr8	75278356	75278497	ENSG00000249395.2|CASC9|lncRNA|chr8:75278356:75278497:-	0	-
#Deleted in new
chr8	75324220	75324316	ENSG00000249395.2|CASC9|lncRNA|chr8:75324220:75324316:-	0	-
#Deleted in new
chr8	75324564	75324741	ENSG00000249395.2|CASC9|lncRNA|chr8:75324564:75324741:-	0	-
#Deleted in new
chr8	7539627	7539881	ENSG00000255251.1|PRR23D1|pc|chr8:7539627:7539881:+	0	+
#Deleted in new
chr8	7540644	7540706	ENSG00000255251.1|PRR23D1|pc|chr8:7540644:7540706:+	0	+
#Deleted in new
chr8	7540951	7541019	ENSG00000255251.1|PRR23D1|pc|chr8:7540951:7541019:+	0	+
#Deleted in new
chr8	7541247	7542450	ENSG00000255251.1|PRR23D1|pc|chr8:7541247:7542450:+	0	+
#Deleted in new
chr8	75485784	75485816	ENSG00000164749.11|HNF4G|pc|chr8:75485784:75485816:+	0	+
#Deleted in new
chr8	75526959	75527134	ENSG00000164749.11|HNF4G|pc|chr8:75526959:75527134:+	0	+
#Deleted in new
chr8	76491199	76491231	ENSG00000253661.1|ZFHX4-AS1|lncRNA|chr8:76491199:76491231:-	0	-
#Deleted in new
chr8	76502743	76502846	ENSG00000253661.1|ZFHX4-AS1|lncRNA|chr8:76502743:76502846:-	0	-
#Deleted in new
chr8	76510390	76510484	ENSG00000254300.1|LINC01111|lncRNA|chr8:76510390:76510484:+	0	+
#Partially deleted in new
chr8	76614792	76615028	ENSG00000253661.1|ZFHX4-AS1|lncRNA|chr8:76614792:76615028:-	0	-
#Deleted in new
chr8	76834120	76834434	ENSG00000091656.15|ZFHX4|pc|chr8:76834120:76834434:+	0	+
#Deleted in new
chr8	76911936	76912074	ENSG00000253416.1|AC023200.1|lncRNA|chr8:76911936:76912074:+	0	+
#Deleted in new
chr8	76986493	76986527	ENSG00000164751.14|PEX2|pc|chr8:76986493:76986527:-	0	-
#Deleted in new
chr8	76987891	76988338	ENSG00000164751.14|PEX2|pc|chr8:76987891:76988338:-	0	-
#Deleted in new
chr8	76988306	76988338	ENSG00000164751.14|PEX2|pc|chr8:76988306:76988338:-	0	-
#Deleted in new
chr8	77000882	77000947	ENSG00000164751.14|PEX2|pc|chr8:77000882:77000947:-	0	-
#Deleted in new
chr8	77000882	77001044	ENSG00000164751.14|PEX2|pc|chr8:77000882:77001044:-	0	-
#Deleted in new
chr8	77450696	77450776	ENSG00000254366.6|AC062004.1|lncRNA|chr8:77450696:77450776:+	0	+
#Deleted in new
chr8	77464000	77464068	ENSG00000254366.6|AC062004.1|lncRNA|chr8:77464000:77464068:+	0	+
#Deleted in new
chr8	77476283	77476381	ENSG00000254366.6|AC062004.1|lncRNA|chr8:77476283:77476381:+	0	+
#Deleted in new
chr8	77505781	77506009	ENSG00000254366.6|AC062004.1|lncRNA|chr8:77505781:77506009:+	0	+
#Deleted in new
chr8	77508505	77508597	ENSG00000254366.6|AC062004.1|lncRNA|chr8:77508505:77508597:+	0	+
#Deleted in new
chr8	77524464	77524557	ENSG00000254366.6|AC062004.1|lncRNA|chr8:77524464:77524557:+	0	+
#Deleted in new
chr8	77537224	77537290	ENSG00000254366.6|AC062004.1|lncRNA|chr8:77537224:77537290:+	0	+
#Deleted in new
chr8	7778590	7779793	ENSG00000255378.1|PRR23D2|pc|chr8:7778590:7779793:-	0	-
#Deleted in new
chr8	7780021	7780089	ENSG00000255378.1|PRR23D2|pc|chr8:7780021:7780089:-	0	-
#Deleted in new
chr8	7780334	7780396	ENSG00000255378.1|PRR23D2|pc|chr8:7780334:7780396:-	0	-
#Deleted in new
chr8	7781159	7781413	ENSG00000255378.1|PRR23D2|pc|chr8:7781159:7781413:-	0	-
#Deleted in new
chr8	78148100	78148282	ENSG00000254001.5|AC084706.1|lncRNA|chr8:78148100:78148282:+	0	+
#Deleted in new
chr8	78152321	78152453	ENSG00000254001.5|AC084706.1|lncRNA|chr8:78152321:78152453:+	0	+
#Deleted in new
chr8	78153537	78153913	ENSG00000254001.5|AC084706.1|lncRNA|chr8:78153537:78153913:+	0	+
#Deleted in new
chr8	7841033	7841242	ENSG00000176782.2|DEFB104A|pc|chr8:7841033:7841242:+	0	+
#Deleted in new
chr8	78480253	78480335	ENSG00000254266.5|PKIA-AS1|lncRNA|chr8:78480253:78480335:-	0	-
#Deleted in new
chr8	78535849	78535973	ENSG00000254266.5|PKIA-AS1|lncRNA|chr8:78535849:78535973:-	0	-
#Deleted in new
chr8	78556498	78556599	ENSG00000254266.5|PKIA-AS1|lncRNA|chr8:78556498:78556599:-	0	-
#Deleted in new
chr8	78558423	78558493	ENSG00000254266.5|PKIA-AS1|lncRNA|chr8:78558423:78558493:-	0	-
#Deleted in new
chr8	78558423	78558497	ENSG00000254266.5|PKIA-AS1|lncRNA|chr8:78558423:78558497:-	0	-
#Deleted in new
chr8	78558423	78558503	ENSG00000254266.5|PKIA-AS1|lncRNA|chr8:78558423:78558503:-	0	-
#Partially deleted in new
chr8	78605951	78609705	ENSG00000260398.1|AC068700.1|lncRNA|chr8:78605951:78609705:+	0	+
#Deleted in new
chr8	7868518	7868697	ENSG00000178287.17|SPAG11A|pc|chr8:7868518:7868697:+	0	+
#Deleted in new
chr8	78685888	78685947	ENSG00000104432.13|IL7|pc|chr8:78685888:78685947:-	0	-
#Deleted in new
chr8	7868801	7868867	ENSG00000178287.17|SPAG11A|pc|chr8:7868801:7868867:+	0	+
#Deleted in new
chr8	78721019	78721135	ENSG00000104432.13|IL7|pc|chr8:78721019:78721135:-	0	-
#Deleted in new
chr8	78721347	78721440	ENSG00000104432.13|IL7|pc|chr8:78721347:78721440:-	0	-
#Deleted in new
chr8	78736473	78736527	ENSG00000104432.13|IL7|pc|chr8:78736473:78736527:-	0	-
#Partially deleted in new
chr8	78747030	78747096	ENSG00000104432.13|IL7|pc|chr8:78747030:78747096:-	0	-
#Partially deleted in new
chr8	78837528	78840522	ENSG00000261618.1|AC083837.1|lncRNA|chr8:78837528:78840522:+	0	+
#Deleted in new
chr8	78904	79244	ENSG00000253896.3|AC144568.2|lncRNA|chr8:78904:79244:+	0	+
#Deleted in new
chr8	78904	79775	ENSG00000253896.3|AC144568.2|lncRNA|chr8:78904:79775:+	0	+
#Deleted in new
chr8	7896473	7896711	ENSG00000171711.2|DEFB4A|pc|chr8:7896473:7896711:+	0	+
#Deleted in new
chr8	79297716	79297795	ENSG00000253659.1|AC138646.1|lncRNA|chr8:79297716:79297795:+	0	+
#Deleted in new
chr8	79307226	79307281	ENSG00000253659.1|AC138646.1|lncRNA|chr8:79307226:79307281:+	0	+
#Deleted in new
chr8	79313972	79314471	ENSG00000253659.1|AC138646.1|lncRNA|chr8:79313972:79314471:+	0	+
#Deleted in new
chr8	7947350	7947433	ENSG00000215356.4|ZNF705B|pc|chr8:7947350:7947433:+	0	+
#Deleted in new
chr8	7950664	7950747	ENSG00000215356.4|ZNF705B|pc|chr8:7950664:7950747:+	0	+
#Deleted in new
chr8	7955013	7955558	ENSG00000225725.4|FAM66E|lncRNA|chr8:7955013:7955558:+	0	+
#Deleted in new
chr8	7955073	7955558	ENSG00000225725.4|FAM66E|lncRNA|chr8:7955073:7955558:+	0	+
#Deleted in new
chr8	7960492	7960986	ENSG00000225725.4|FAM66E|lncRNA|chr8:7960492:7960986:+	0	+
#Deleted in new
chr8	7961232	7961296	ENSG00000225725.4|FAM66E|lncRNA|chr8:7961232:7961296:+	0	+
#Deleted in new
chr8	7961232	7961406	ENSG00000225725.4|FAM66E|lncRNA|chr8:7961232:7961406:+	0	+
#Deleted in new
chr8	79771566	79771622	ENSG00000249328.2|AC036214.1|lncRNA|chr8:79771566:79771622:-	0	-
#Deleted in new
chr8	79820468	79820515	ENSG00000249328.2|AC036214.1|lncRNA|chr8:79820468:79820515:-	0	-
#Deleted in new
chr8	7984264	7984400	ENSG00000225725.4|FAM66E|lncRNA|chr8:7984264:7984400:+	0	+
#Deleted in new
chr8	7984954	7985233	ENSG00000225725.4|FAM66E|lncRNA|chr8:7984954:7985233:+	0	+
#Deleted in new
chr8	7985171	7985233	ENSG00000225725.4|FAM66E|lncRNA|chr8:7985171:7985233:+	0	+
#Deleted in new
chr8	7985464	7985548	ENSG00000225725.4|FAM66E|lncRNA|chr8:7985464:7985548:+	0	+
#Deleted in new
chr8	7985480	7985548	ENSG00000225725.4|FAM66E|lncRNA|chr8:7985480:7985548:+	0	+
#Deleted in new
chr8	7986005	7986073	ENSG00000225725.4|FAM66E|lncRNA|chr8:7986005:7986073:+	0	+
#Deleted in new
chr8	7986536	7986601	ENSG00000225725.4|FAM66E|lncRNA|chr8:7986536:7986601:+	0	+
#Deleted in new
chr8	7987009	7987270	ENSG00000225725.4|FAM66E|lncRNA|chr8:7987009:7987270:+	0	+
#Deleted in new
chr8	79956464	79957381	ENSG00000272518.1|AC036214.2|lncRNA|chr8:79956464:79957381:-	0	-
#Deleted in new
chr8	79957802	79958435	ENSG00000147586.9|MRPS28|pc|chr8:79957802:79958435:-	0	-
#Deleted in new
chr8	79958256	79958435	ENSG00000276418.5|AC036214.3|pc|chr8:79958256:79958435:-	0	-
#Deleted in new
chr8	79958271	79958435	ENSG00000147586.9|MRPS28|pc|chr8:79958271:79958435:-	0	-
#Deleted in new
chr8	80028694	80028796	ENSG00000147586.9|MRPS28|pc|chr8:80028694:80028796:-	0	-
#Partially deleted in new
chr8	80032723	80033300	ENSG00000272264.1|AC009686.2|lncRNA|chr8:80032723:80033300:-	0	-
#Deleted in new
chr8	8008194	8008755	ENSG00000225725.4|FAM66E|lncRNA|chr8:8008194:8008755:+	0	+
#Deleted in new
chr8	80119814	80119884	ENSG00000076554.15|TPD52|pc|chr8:80119814:80119884:-	0	-
#Deleted in new
chr8	80122851	80123113	ENSG00000254205.1|AC009686.1|lncRNA|chr8:80122851:80123113:+	0	+
#Deleted in new
chr8	80127568	80127670	ENSG00000254205.1|AC009686.1|lncRNA|chr8:80127568:80127670:+	0	+
#Deleted in new
chr8	80158436	80158887	ENSG00000076554.15|TPD52|pc|chr8:80158436:80158887:-	0	-
#Deleted in new
chr8	80177992	80178279	ENSG00000076554.15|TPD52|pc|chr8:80177992:80178279:-	0	-
#Deleted in new
chr8	80218468	80218530	ENSG00000076554.15|TPD52|pc|chr8:80218468:80218530:-	0	-
#Deleted in new
chr8	80218468	80218539	ENSG00000076554.15|TPD52|pc|chr8:80218468:80218539:-	0	-
#Deleted in new
chr8	80231068	80231172	ENSG00000076554.15|TPD52|pc|chr8:80231068:80231172:-	0	-
#Deleted in new
chr8	80231068	80231219	ENSG00000076554.15|TPD52|pc|chr8:80231068:80231219:-	0	-
#Deleted in new
chr8	80231068	80231232	ENSG00000076554.15|TPD52|pc|chr8:80231068:80231232:-	0	-
#Deleted in new
chr8	80274104	80274243	ENSG00000253238.1|AC104212.3|lncRNA|chr8:80274104:80274243:+	0	+
#Deleted in new
chr8	80288816	80289002	ENSG00000253238.1|AC104212.3|lncRNA|chr8:80288816:80289002:+	0	+
#Deleted in new
chr8	80339800	80339840	ENSG00000253238.1|AC104212.3|lncRNA|chr8:80339800:80339840:+	0	+
#Partially deleted in new
chr8	80535005	80538577	ENSG00000254162.1|AC009812.3|lncRNA|chr8:80535005:80538577:-	0	-
#Deleted in new
chr8	80538941	80539135	ENSG00000254162.1|AC009812.3|lncRNA|chr8:80538941:80539135:-	0	-
#Deleted in new
chr8	80673234	80673339	ENSG00000164684.13|ZNF704|pc|chr8:80673234:80673339:-	0	-
#Deleted in new
chr8	80694224	80694308	ENSG00000164684.13|ZNF704|pc|chr8:80694224:80694308:-	0	-
#Deleted in new
chr8	8086006	8086223	ENSG00000284606.1|AC105233.5|lncRNA|chr8:8086006:8086223:+	0	+
#Deleted in new
chr8	80970290	80970907	ENSG00000076641.4|PAG1|pc|chr8:80970290:80970907:-	0	-
#Deleted in new
chr8	81058522	81058683	ENSG00000254177.1|AC079209.2|lncRNA|chr8:81058522:81058683:+	0	+
#Partially deleted in new
chr8	81154278	81154406	ENSG00000253214.1|AC079209.1|lncRNA|chr8:81154278:81154406:+	0	+
#Deleted in new
chr8	81154329	81154406	ENSG00000253214.1|AC079209.1|lncRNA|chr8:81154329:81154406:+	0	+
#Deleted in new
chr8	81157613	81157803	ENSG00000253214.1|AC079209.1|lncRNA|chr8:81157613:81157803:+	0	+
#Deleted in new
chr8	81158581	81158710	ENSG00000253214.1|AC079209.1|lncRNA|chr8:81158581:81158710:+	0	+
#Partially deleted in new
chr8	81158581	81159083	ENSG00000253214.1|AC079209.1|lncRNA|chr8:81158581:81159083:+	0	+
#Deleted in new
chr8	81164283	81164599	ENSG00000253214.1|AC079209.1|lncRNA|chr8:81164283:81164599:+	0	+
#Deleted in new
chr8	81439435	81439630	ENSG00000253859.2|AC018616.1|lncRNA|chr8:81439435:81439630:+	0	+
#Deleted in new
chr8	8146708	8146892	ENSG00000284606.1|AC105233.5|lncRNA|chr8:8146708:8146892:+	0	+
#Deleted in new
chr8	81497916	81498052	ENSG00000253859.2|AC018616.1|lncRNA|chr8:81497916:81498052:+	0	+
#Deleted in new
chr8	8163609	8163707	ENSG00000284606.1|AC105233.5|lncRNA|chr8:8163609:8163707:+	0	+
#Deleted in new
chr8	81674671	81674831	ENSG00000133731.9|IMPA1|pc|chr8:81674671:81674831:-	0	-
#Deleted in new
chr8	8167818	8168083	ENSG00000253893.2|FAM85B|lncRNA|chr8:8167818:8168083:-	0	-
#Deleted in new
chr8	81678582	81678689	ENSG00000133731.9|IMPA1|pc|chr8:81678582:81678689:-	0	-
#Deleted in new
chr8	81685762	81685832	ENSG00000133731.9|IMPA1|pc|chr8:81685762:81685832:-	0	-
#Deleted in new
chr8	81685762	81685963	ENSG00000133731.9|IMPA1|pc|chr8:81685762:81685963:-	0	-
#Deleted in new
chr8	81685762	81686051	ENSG00000133731.9|IMPA1|pc|chr8:81685762:81686051:-	0	-
#Deleted in new
chr8	81686251	81686282	ENSG00000133731.9|IMPA1|pc|chr8:81686251:81686282:-	0	-
#Deleted in new
chr8	81686251	81686283	ENSG00000133731.9|IMPA1|pc|chr8:81686251:81686283:-	0	-
#Partially deleted in new
chr8	81686251	81686301	ENSG00000133731.9|IMPA1|pc|chr8:81686251:81686301:-	0	-
#Partially deleted in new
chr8	81686251	81686310	ENSG00000133731.9|IMPA1|pc|chr8:81686251:81686310:-	0	-
#Partially deleted in new
chr8	81686251	81686315	ENSG00000133731.9|IMPA1|pc|chr8:81686251:81686315:-	0	-
#Partially deleted in new
chr8	81686251	81686318	ENSG00000133731.9|IMPA1|pc|chr8:81686251:81686318:-	0	-
#Partially deleted in new
chr8	81696367	81698694	ENSG00000280193.1|AC132219.2|lncRNA|chr8:81696367:81698694:+	0	+
#Deleted in new
chr8	81708787	81708829	ENSG00000104231.10|ZFAND1|pc|chr8:81708787:81708829:-	0	-
#Deleted in new
chr8	8177754	8180527	ENSG00000284606.1|AC105233.5|lncRNA|chr8:8177754:8180527:+	0	+
#Deleted in new
chr8	81791822	81791925	ENSG00000253334.1|AC132219.1|lncRNA|chr8:81791822:81791925:+	0	+
#Deleted in new
chr8	8184725	8184832	ENSG00000253893.2|FAM85B|lncRNA|chr8:8184725:8184832:-	0	-
#Deleted in new
chr8	8188534	8189195	ENSG00000268955.2|AC068020.1|lncRNA|chr8:8188534:8189195:-	0	-
#Deleted in new
chr8	81885376	81885440	ENSG00000254689.1|LINC02235|lncRNA|chr8:81885376:81885440:+	0	+
#Deleted in new
chr8	8190119	8190240	ENSG00000284606.1|AC105233.5|lncRNA|chr8:8190119:8190240:+	0	+
#Deleted in new
chr8	8191795	8192022	ENSG00000284606.1|AC105233.5|lncRNA|chr8:8191795:8192022:+	0	+
#Deleted in new
chr8	8196686	8199973	ENSG00000284606.1|AC105233.5|lncRNA|chr8:8196686:8199973:+	0	+
#Deleted in new
chr8	82108564	82108713	ENSG00000254123.1|AC027701.1|lncRNA|chr8:82108564:82108713:-	0	-
#Deleted in new
chr8	82160416	82160542	ENSG00000254123.1|AC027701.1|lncRNA|chr8:82160416:82160542:-	0	-
#Deleted in new
chr8	82160529	82160577	ENSG00000254123.1|AC027701.1|lncRNA|chr8:82160529:82160577:-	0	-
#Deleted in new
chr8	8220043	8220182	ENSG00000253893.2|FAM85B|lncRNA|chr8:8220043:8220182:-	0	-
#Deleted in new
chr8	8223825	8223887	ENSG00000253893.2|FAM85B|lncRNA|chr8:8223825:8223887:-	0	-
#Deleted in new
chr8	82514567	82514661	ENSG00000253503.5|AC060765.1|lncRNA|chr8:82514567:82514661:-	0	-
#Deleted in new
chr8	82536235	82536407	ENSG00000253503.5|AC060765.1|lncRNA|chr8:82536235:82536407:-	0	-
#Deleted in new
chr8	82564181	82564215	ENSG00000253503.5|AC060765.1|lncRNA|chr8:82564181:82564215:-	0	-
#Deleted in new
chr8	82588164	82588243	ENSG00000253503.5|AC060765.1|lncRNA|chr8:82588164:82588243:-	0	-
#Deleted in new
chr8	82677117	82677153	ENSG00000253503.5|AC060765.1|lncRNA|chr8:82677117:82677153:-	0	-
#Deleted in new
chr8	82862778	82863110	ENSG00000253836.1|AC105031.2|lncRNA|chr8:82862778:82863110:-	0	-
#Deleted in new
chr8	82865466	82865650	ENSG00000253836.1|AC105031.2|lncRNA|chr8:82865466:82865650:-	0	-
#Deleted in new
chr8	82881814	82881891	ENSG00000253836.1|AC105031.2|lncRNA|chr8:82881814:82881891:-	0	-
#Deleted in new
chr8	82882259	82882350	ENSG00000253836.1|AC105031.2|lncRNA|chr8:82882259:82882350:-	0	-
#Deleted in new
chr8	82912103	82912378	ENSG00000254394.1|AC105031.3|lncRNA|chr8:82912103:82912378:+	0	+
#Deleted in new
chr8	82912938	82913023	ENSG00000254394.1|AC105031.3|lncRNA|chr8:82912938:82913023:+	0	+
#Deleted in new
chr8	82916806	82916879	ENSG00000253836.1|AC105031.2|lncRNA|chr8:82916806:82916879:-	0	-
#Deleted in new
chr8	82961195	82961309	ENSG00000254394.1|AC105031.3|lncRNA|chr8:82961195:82961309:+	0	+
#Deleted in new
chr8	82961784	82961926	ENSG00000254394.1|AC105031.3|lncRNA|chr8:82961784:82961926:+	0	+
#Deleted in new
chr8	83403757	83404069	ENSG00000253898.1|LINC01419|lncRNA|chr8:83403757:83404069:+	0	+
#Deleted in new
chr8	83407691	83408900	ENSG00000253898.1|LINC01419|lncRNA|chr8:83407691:83408900:+	0	+
#Deleted in new
chr8	83912712	83912835	ENSG00000254202.1|AC015522.1|lncRNA|chr8:83912712:83912835:+	0	+
#Deleted in new
chr8	84044543	84044604	ENSG00000254202.1|AC015522.1|lncRNA|chr8:84044543:84044604:+	0	+
#Deleted in new
chr8	84084148	84084243	ENSG00000254202.1|AC015522.1|lncRNA|chr8:84084148:84084243:+	0	+
#Deleted in new
chr8	84139922	84140283	ENSG00000254202.1|AC015522.1|lncRNA|chr8:84139922:84140283:+	0	+
#Partially deleted in new
chr8	8414689	8415101	ENSG00000253505.1|AC103957.1|lncRNA|chr8:8414689:8415101:-	0	-
#Deleted in new
chr8	8422423	8423013	ENSG00000253505.1|AC103957.1|lncRNA|chr8:8422423:8423013:-	0	-
#Deleted in new
chr8	84346118	84346150	ENSG00000184672.11|RALYL|pc|chr8:84346118:84346150:+	0	+
#Deleted in new
chr8	8456908	8457082	ENSG00000254153.1|AC103957.2|lncRNA|chr8:8456908:8457082:-	0	-
#Partially deleted in new
chr8	8458408	8458526	ENSG00000254153.1|AC103957.2|lncRNA|chr8:8458408:8458526:-	0	-
#Deleted in new
chr8	85172076	85172317	ENSG00000260493.1|AC011773.4|lncRNA|chr8:85172076:85172317:-	0	-
#Partially deleted in new
chr8	85172437	85172472	ENSG00000260493.1|AC011773.4|lncRNA|chr8:85172437:85172472:-	0	-
#Partially deleted in new
chr8	85175798	85177062	ENSG00000260493.1|AC011773.4|lncRNA|chr8:85175798:85177062:-	0	-
#Deleted in new
chr8	85176830	85177041	ENSG00000260493.1|AC011773.4|lncRNA|chr8:85176830:85177041:-	0	-
#Deleted in new
chr8	85187684	85187796	ENSG00000133740.10|E2F5|pc|chr8:85187684:85187796:+	0	+
#Partially deleted in new
chr8	85218625	85219363	ENSG00000176731.11|C8orf59|pc|chr8:85218625:85219363:-	0	-
#Partially deleted in new
chr8	85218670	85219360	ENSG00000176731.11|C8orf59|pc|chr8:85218670:85219360:-	0	-
#Partially deleted in new
chr8	85218706	85219322	ENSG00000176731.11|C8orf59|pc|chr8:85218706:85219322:-	0	-
#Deleted in new
chr8	85219235	85219360	ENSG00000176731.11|C8orf59|pc|chr8:85219235:85219360:-	0	-
#Deleted in new
chr8	85219235	85219363	ENSG00000176731.11|C8orf59|pc|chr8:85219235:85219363:-	0	-
#Deleted in new
chr8	85219322	85219363	ENSG00000176731.11|C8orf59|pc|chr8:85219322:85219363:-	0	-
#Deleted in new
chr8	85224954	85225295	ENSG00000185015.7|CA13|pc|chr8:85224954:85225295:+	0	+
#Deleted in new
chr8	85226508	85226639	ENSG00000258256.1|AC011773.3|lncRNA|chr8:85226508:85226639:-	0	-
#Deleted in new
chr8	85237718	85237870	ENSG00000185015.7|CA13|pc|chr8:85237718:85237870:+	0	+
#Deleted in new
chr8	85243344	85243688	ENSG00000258256.1|AC011773.3|lncRNA|chr8:85243344:85243688:-	0	-
#Deleted in new
chr8	85249823	85249848	ENSG00000257962.1|AC011773.2|lncRNA|chr8:85249823:85249848:-	0	-
#Deleted in new
chr8	85338088	85338139	ENSG00000133742.13|CA1|pc|chr8:85338088:85338139:-	0	-
#Deleted in new
chr8	85341019	85341135	ENSG00000133742.13|CA1|pc|chr8:85341019:85341135:-	0	-
#Deleted in new
chr8	85373435	85373468	ENSG00000164879.6|CA3|pc|chr8:85373435:85373468:+	0	+
#Deleted in new
chr8	85382953	85383235	ENSG00000164879.6|CA3|pc|chr8:85382953:85383235:+	0	+
#Deleted in new
chr8	85523898	85524125	ENSG00000254380.1|AC093331.2|lncRNA|chr8:85523898:85524125:+	0	+
#Deleted in new
chr8	85524576	85524859	ENSG00000254380.1|AC093331.2|lncRNA|chr8:85524576:85524859:+	0	+
#Deleted in new
chr8	8559893	8560043	ENSG00000253774.1|AC114550.3|lncRNA|chr8:8559893:8560043:+	0	+
#Deleted in new
chr8	8560919	8560965	ENSG00000253343.1|AC114550.2|lncRNA|chr8:8560919:8560965:-	0	-
#Deleted in new
chr8	8561200	8561337	ENSG00000253774.1|AC114550.3|lncRNA|chr8:8561200:8561337:+	0	+
#Deleted in new
chr8	8561390	8561534	ENSG00000253130.1|AC114550.1|lncRNA|chr8:8561390:8561534:+	0	+
#Deleted in new
chr8	8561393	8561534	ENSG00000253130.1|AC114550.1|lncRNA|chr8:8561393:8561534:+	0	+
#Deleted in new
chr8	8561832	8562124	ENSG00000253774.1|AC114550.3|lncRNA|chr8:8561832:8562124:+	0	+
#Deleted in new
chr8	8564106	8564535	ENSG00000253130.1|AC114550.1|lncRNA|chr8:8564106:8564535:+	0	+
#Deleted in new
chr8	85839704	85839785	ENSG00000253154.1|AC100801.1|lncRNA|chr8:85839704:85839785:+	0	+
#Deleted in new
chr8	85889522	85889653	ENSG00000253154.1|AC100801.1|lncRNA|chr8:85889522:85889653:+	0	+
#Deleted in new
chr8	85889578	85889653	ENSG00000253154.1|AC100801.1|lncRNA|chr8:85889578:85889653:+	0	+
#Duplicated in new
chr8	86063964	86064631	ENSG00000147613.7|PSKH2|pc|chr8:86063964:86064631:-	0	-
#Duplicated in new
chr8	86064078	86064631	ENSG00000147613.7|PSKH2|pc|chr8:86064078:86064631:-	0	-
#Deleted in new
chr8	86066387	86066480	ENSG00000147614.3|ATP6V0D2|pc|chr8:86066387:86066480:+	0	+
#Partially deleted in new
chr8	86069437	86069697	ENSG00000147613.7|PSKH2|pc|chr8:86069437:86069697:-	0	-
#Deleted in new
chr8	86073888	86074102	ENSG00000147614.3|ATP6V0D2|pc|chr8:86073888:86074102:+	0	+
#Deleted in new
chr8	86074115	86074171	ENSG00000147613.7|PSKH2|pc|chr8:86074115:86074171:-	0	-
#Deleted in new
chr8	86153433	86153613	ENSG00000253675.1|AC023194.3|lncRNA|chr8:86153433:86153613:-	0	-
#Deleted in new
chr8	86180417	86180619	ENSG00000253699.1|AC084128.1|lncRNA|chr8:86180417:86180619:+	0	+
#Deleted in new
chr8	86186646	86186706	ENSG00000253699.1|AC084128.1|lncRNA|chr8:86186646:86186706:+	0	+
#Deleted in new
chr8	86195886	86196001	ENSG00000253699.1|AC084128.1|lncRNA|chr8:86195886:86196001:+	0	+
#Deleted in new
chr8	86200140	86200222	ENSG00000253699.1|AC084128.1|lncRNA|chr8:86200140:86200222:+	0	+
#Deleted in new
chr8	86212194	86212236	ENSG00000253699.1|AC084128.1|lncRNA|chr8:86212194:86212236:+	0	+
#Deleted in new
chr8	86215560	86215688	ENSG00000164893.8|SLC7A13|pc|chr8:86215560:86215688:-	0	-
#Deleted in new
chr8	86282303	86282458	ENSG00000164893.8|SLC7A13|pc|chr8:86282303:86282458:-	0	-
#Deleted in new
chr8	86333273	86334199	ENSG00000254231.1|AC103760.1|lncRNA|chr8:86333273:86334199:-	0	-
#Deleted in new
chr8	86335702	86335761	ENSG00000254231.1|AC103760.1|lncRNA|chr8:86335702:86335761:-	0	-
#Deleted in new
chr8	86337932	86338387	ENSG00000254231.1|AC103760.1|lncRNA|chr8:86337932:86338387:-	0	-
#Deleted in new
chr8	86338119	86338387	ENSG00000254231.1|AC103760.1|lncRNA|chr8:86338119:86338387:-	0	-
#Deleted in new
chr8	86386835	86387026	ENSG00000123124.13|WWP1|pc|chr8:86386835:86387026:+	0	+
#Deleted in new
chr8	86470217	86470410	ENSG00000176623.11|RMDN1|pc|chr8:86470217:86470410:-	0	-
#Deleted in new
chr8	86472347	86472479	ENSG00000176623.11|RMDN1|pc|chr8:86472347:86472479:-	0	-
#Deleted in new
chr8	86472348	86472479	ENSG00000176623.11|RMDN1|pc|chr8:86472348:86472479:-	0	-
#Partially deleted in new
chr8	86472349	86474358	ENSG00000176623.11|RMDN1|pc|chr8:86472349:86474358:-	0	-
#Deleted in new
chr8	86472352	86472479	ENSG00000176623.11|RMDN1|pc|chr8:86472352:86472479:-	0	-
#Partially deleted in new
chr8	86478074	86478420	ENSG00000123124.13|WWP1|pc|chr8:86478074:86478420:+	0	+
#Deleted in new
chr8	86494828	86494966	ENSG00000176623.11|RMDN1|pc|chr8:86494828:86494966:-	0	-
#Deleted in new
chr8	86514241	86514338	ENSG00000176623.11|RMDN1|pc|chr8:86514241:86514338:-	0	-
#Deleted in new
chr8	86514241	86514357	ENSG00000176623.11|RMDN1|pc|chr8:86514241:86514357:-	0	-
#Deleted in new
chr8	86521603	86521714	ENSG00000085719.12|CPNE3|pc|chr8:86521603:86521714:+	0	+
#Deleted in new
chr8	86524708	86524814	ENSG00000085719.12|CPNE3|pc|chr8:86524708:86524814:+	0	+
#Deleted in new
chr8	86524876	86524997	ENSG00000085719.12|CPNE3|pc|chr8:86524876:86524997:+	0	+
#Deleted in new
chr8	86569313	86569387	ENSG00000170289.12|CNGB3|pc|chr8:86569313:86569387:-	0	-
#Partially deleted in new
chr8	86703948	86704402	ENSG00000170289.12|CNGB3|pc|chr8:86703948:86704402:-	0	-
#Deleted in new
chr8	86760835	86760960	ENSG00000254115.1|AC090572.3|lncRNA|chr8:86760835:86760960:+	0	+
#Deleted in new
chr8	86772295	86772473	ENSG00000253778.1|AC090572.2|lncRNA|chr8:86772295:86772473:+	0	+
#Deleted in new
chr8	86783872	86783980	ENSG00000253778.1|AC090572.2|lncRNA|chr8:86783872:86783980:+	0	+
#Deleted in new
chr8	86815233	86815317	ENSG00000253778.1|AC090572.2|lncRNA|chr8:86815233:86815317:+	0	+
#Deleted in new
chr8	87044491	87044665	ENSG00000176571.11|CNBD1|pc|chr8:87044491:87044665:+	0	+
#Deleted in new
chr8	87353871	87353876	ENSG00000176571.11|CNBD1|pc|chr8:87353871:87353876:+	0	+
#Deleted in new
chr8	87382619	87382859	ENSG00000176571.11|CNBD1|pc|chr8:87382619:87382859:+	0	+
#Deleted in new
chr8	8753999	8754108	ENSG00000254367.5|AC087269.1|lncRNA|chr8:8753999:8754108:-	0	-
#Deleted in new
chr8	87540834	87542489	ENSG00000253500.5|AF121898.1|lncRNA|chr8:87540834:87542489:-	0	-
#Deleted in new
chr8	87566169	87566981	ENSG00000253500.5|AF121898.1|lncRNA|chr8:87566169:87566981:-	0	-
#Deleted in new
chr8	87566479	87566981	ENSG00000253500.5|AF121898.1|lncRNA|chr8:87566479:87566981:-	0	-
#Deleted in new
chr8	8757175	8757316	ENSG00000254367.5|AC087269.1|lncRNA|chr8:8757175:8757316:-	0	-
#Deleted in new
chr8	87609808	87609854	ENSG00000176571.11|CNBD1|pc|chr8:87609808:87609854:+	0	+
#Deleted in new
chr8	87610538	87610578	ENSG00000176571.11|CNBD1|pc|chr8:87610538:87610578:+	0	+
#Deleted in new
chr8	87615084	87615219	ENSG00000176571.11|CNBD1|pc|chr8:87615084:87615219:+	0	+
#Deleted in new
chr8	87636600	87636650	ENSG00000253500.5|AF121898.1|lncRNA|chr8:87636600:87636650:-	0	-
#Deleted in new
chr8	87646916	87647029	ENSG00000253500.5|AF121898.1|lncRNA|chr8:87646916:87647029:-	0	-
#Deleted in new
chr8	87705708	87705741	ENSG00000253500.5|AF121898.1|lncRNA|chr8:87705708:87705741:-	0	-
#Deleted in new
chr8	87733774	87733843	ENSG00000253500.5|AF121898.1|lncRNA|chr8:87733774:87733843:-	0	-
#Deleted in new
chr8	87751206	87751317	ENSG00000253500.5|AF121898.1|lncRNA|chr8:87751206:87751317:-	0	-
#Deleted in new
chr8	87755651	87755695	ENSG00000253500.5|AF121898.1|lncRNA|chr8:87755651:87755695:-	0	-
#Deleted in new
chr8	87755651	87755718	ENSG00000253500.5|AF121898.1|lncRNA|chr8:87755651:87755718:-	0	-
#Deleted in new
chr8	8781301	8781435	ENSG00000254367.5|AC087269.1|lncRNA|chr8:8781301:8781435:-	0	-
#Deleted in new
chr8	8782105	8782479	ENSG00000254367.5|AC087269.1|lncRNA|chr8:8782105:8782479:-	0	-
#Deleted in new
chr8	88003726	88003803	ENSG00000253171.1|AC037450.1|lncRNA|chr8:88003726:88003803:+	0	+
#Deleted in new
chr8	88010516	88010703	ENSG00000253171.1|AC037450.1|lncRNA|chr8:88010516:88010703:+	0	+
#Deleted in new
chr8	88012083	88012201	ENSG00000253171.1|AC037450.1|lncRNA|chr8:88012083:88012201:+	0	+
#Deleted in new
chr8	88069232	88069522	ENSG00000156103.15|MMP16|pc|chr8:88069232:88069522:-	0	-
#Deleted in new
chr8	883197	883348	ENSG00000198010.12|DLGAP2|pc|chr8:883197:883348:+	0	+
#Deleted in new
chr8	883327	883348	ENSG00000198010.12|DLGAP2|pc|chr8:883327:883348:+	0	+
#Deleted in new
chr8	88700290	88700349	ENSG00000253553.5|AC090568.2|lncRNA|chr8:88700290:88700349:+	0	+
#Deleted in new
chr8	88700291	88700349	ENSG00000253553.5|AC090568.2|lncRNA|chr8:88700291:88700349:+	0	+
#Deleted in new
chr8	88709329	88709540	ENSG00000253553.5|AC090568.2|lncRNA|chr8:88709329:88709540:+	0	+
#Deleted in new
chr8	88709329	88709691	ENSG00000253553.5|AC090568.2|lncRNA|chr8:88709329:88709691:+	0	+
#Deleted in new
chr8	88709329	88709727	ENSG00000253553.5|AC090568.2|lncRNA|chr8:88709329:88709727:+	0	+
#Deleted in new
chr8	88808317	88808908	ENSG00000271156.1|AC090578.1|lncRNA|chr8:88808317:88808908:-	0	-
#Deleted in new
chr8	891250	891628	ENSG00000282759.1|AC026950.2|lncRNA|chr8:891250:891628:-	0	-
#Deleted in new
chr8	893020	893112	ENSG00000282759.1|AC026950.2|lncRNA|chr8:893020:893112:-	0	-
#Deleted in new
chr8	89609408	89609494	ENSG00000251136.8|AF117829.1|lncRNA|chr8:89609408:89609494:-	0	-
#Deleted in new
chr8	89623084	89623204	ENSG00000251136.8|AF117829.1|lncRNA|chr8:89623084:89623204:-	0	-
#Deleted in new
chr8	89629153	89629251	ENSG00000251136.8|AF117829.1|lncRNA|chr8:89629153:89629251:-	0	-
#Deleted in new
chr8	89629153	89629271	ENSG00000251136.8|AF117829.1|lncRNA|chr8:89629153:89629271:-	0	-
#Deleted in new
chr8	89717427	89717728	ENSG00000251136.8|AF117829.1|lncRNA|chr8:89717427:89717728:-	0	-
#Partially deleted in new
chr8	89720903	89721374	ENSG00000251136.8|AF117829.1|lncRNA|chr8:89720903:89721374:-	0	-
#Deleted in new
chr8	89720943	89721374	ENSG00000251136.8|AF117829.1|lncRNA|chr8:89720943:89721374:-	0	-
#Deleted in new
chr8	89756234	89756610	ENSG00000251136.8|AF117829.1|lncRNA|chr8:89756234:89756610:-	0	-
#Partially deleted in new
chr8	89780370	89780778	ENSG00000104312.7|RIPK2|pc|chr8:89780370:89780778:+	0	+
#Deleted in new
chr8	89984207	89984237	ENSG00000104320.13|NBN|pc|chr8:89984207:89984237:-	0	-
#Partially deleted in new
chr8	89984207	89984404	ENSG00000104320.13|NBN|pc|chr8:89984207:89984404:-	0	-
#Deleted in new
chr8	90005291	90005369	ENSG00000104325.6|DECR1|pc|chr8:90005291:90005369:+	0	+
#Deleted in new
chr8	90005447	90005731	ENSG00000104325.6|DECR1|pc|chr8:90005447:90005731:+	0	+
#Deleted in new
chr8	90005447	90005845	ENSG00000104325.6|DECR1|pc|chr8:90005447:90005845:+	0	+
#Deleted in new
chr8	90006035	90006233	ENSG00000104325.6|DECR1|pc|chr8:90006035:90006233:+	0	+
#Deleted in new
chr8	90006035	90006277	ENSG00000104325.6|DECR1|pc|chr8:90006035:90006277:+	0	+
#Deleted in new
chr8	9002146	9002442	ENSG00000104626.14|ERI1|pc|chr8:9002146:9002442:+	0	+
#Deleted in new
chr8	90029283	90029464	ENSG00000104325.6|DECR1|pc|chr8:90029283:90029464:+	0	+
#Deleted in new
chr8	90030454	90030525	ENSG00000104325.6|DECR1|pc|chr8:90030454:90030525:+	0	+
#Deleted in new
chr8	9009031	9009138	ENSG00000104626.14|ERI1|pc|chr8:9009031:9009138:+	0	+
#Deleted in new
chr8	90093397	90093484	ENSG00000104327.7|CALB1|pc|chr8:90093397:90093484:-	0	-
#Deleted in new
chr8	90093397	90093675	ENSG00000104327.7|CALB1|pc|chr8:90093397:90093675:-	0	-
#Deleted in new
chr8	90095288	90095351	ENSG00000104327.7|CALB1|pc|chr8:90095288:90095351:-	0	-
#Deleted in new
chr8	90095288	90095470	ENSG00000104327.7|CALB1|pc|chr8:90095288:90095470:-	0	-
#Deleted in new
chr8	90095288	90095475	ENSG00000104327.7|CALB1|pc|chr8:90095288:90095475:-	0	-
#Deleted in new
chr8	90221487	90221510	ENSG00000253394.5|LINC00534|lncRNA|chr8:90221487:90221510:+	0	+
#Deleted in new
chr8	90221487	90221746	ENSG00000253394.5|LINC00534|lncRNA|chr8:90221487:90221746:+	0	+
#Deleted in new
chr8	90221516	90221746	ENSG00000253394.5|LINC00534|lncRNA|chr8:90221516:90221746:+	0	+
#Deleted in new
chr8	90221537	90221746	ENSG00000253394.5|LINC00534|lncRNA|chr8:90221537:90221746:+	0	+
#Deleted in new
chr8	90221646	90221746	ENSG00000253394.5|LINC00534|lncRNA|chr8:90221646:90221746:+	0	+
#Partially deleted in new
chr8	9029791	9033339	ENSG00000104626.14|ERI1|pc|chr8:9029791:9033339:+	0	+
#Partially deleted in new
chr8	9029791	9033341	ENSG00000104626.14|ERI1|pc|chr8:9029791:9033341:+	0	+
#Deleted in new
chr8	9032548	9033338	ENSG00000104626.14|ERI1|pc|chr8:9032548:9033338:+	0	+
#Deleted in new
chr8	90351540	90351666	ENSG00000253394.5|LINC00534|lncRNA|chr8:90351540:90351666:+	0	+
#Deleted in new
chr8	90387566	90387952	ENSG00000253394.5|LINC00534|lncRNA|chr8:90387566:90387952:+	0	+
#Deleted in new
chr8	90387566	90387988	ENSG00000253394.5|LINC00534|lncRNA|chr8:90387566:90387988:+	0	+
#Deleted in new
chr8	90387566	90388145	ENSG00000253394.5|LINC00534|lncRNA|chr8:90387566:90388145:+	0	+
#Deleted in new
chr8	90454408	90454523	ENSG00000253394.5|LINC00534|lncRNA|chr8:90454408:90454523:+	0	+
#Deleted in new
chr8	90534610	90534626	ENSG00000254180.1|AB015752.1|lncRNA|chr8:90534610:90534626:-	0	-
#Partially deleted in new
chr8	90562228	90562340	ENSG00000254180.1|AB015752.1|lncRNA|chr8:90562228:90562340:-	0	-
#Deleted in new
chr8	90605767	90606065	ENSG00000253799.1|LINC01030|lncRNA|chr8:90605767:90606065:-	0	-
#Deleted in new
chr8	9062668	9062784	ENSG00000104626.14|ERI1|pc|chr8:9062668:9062784:+	0	+
#Deleted in new
chr8	90656513	90656598	ENSG00000246792.2|AC106038.1|lncRNA|chr8:90656513:90656598:+	0	+
#Deleted in new
chr8	90683815	90684030	ENSG00000180694.13|TMEM64|pc|chr8:90683815:90684030:-	0	-
#Deleted in new
chr8	90683950	90684030	ENSG00000180694.13|TMEM64|pc|chr8:90683950:90684030:-	0	-
#Deleted in new
chr8	90690443	90690575	ENSG00000180694.13|TMEM64|pc|chr8:90690443:90690575:-	0	-
#Deleted in new
chr8	90709435	90709556	ENSG00000180694.13|TMEM64|pc|chr8:90709435:90709556:-	0	-
#Deleted in new
chr8	90727498	90727579	ENSG00000180694.13|TMEM64|pc|chr8:90727498:90727579:-	0	-
#Deleted in new
chr8	90812904	90813160	ENSG00000254251.1|AC103770.1|lncRNA|chr8:90812904:90813160:-	0	-
#Deleted in new
chr8	90859058	90859240	ENSG00000254251.1|AC103770.1|lncRNA|chr8:90859058:90859240:-	0	-
#Deleted in new
chr8	90903865	90903921	ENSG00000123119.11|NECAB1|pc|chr8:90903865:90903921:+	0	+
#Deleted in new
chr8	9096742	9096860	ENSG00000104626.14|ERI1|pc|chr8:9096742:9096860:+	0	+
#Deleted in new
chr8	91044620	91044733	ENSG00000254219.1|AC087439.2|lncRNA|chr8:91044620:91044733:-	0	-
#Deleted in new
chr8	91044620	91044762	ENSG00000254219.1|AC087439.2|lncRNA|chr8:91044620:91044762:-	0	-
#Deleted in new
chr8	91059908	91063746	ENSG00000253738.1|OTUD6B-AS1|lncRNA|chr8:91059908:91063746:-	0	-
#Partially deleted in new
chr8	91067910	91069822	ENSG00000253738.1|OTUD6B-AS1|lncRNA|chr8:91067910:91069822:-	0	-
#Deleted in new
chr8	91118223	91118552	ENSG00000214954.8|LRRC69|pc|chr8:91118223:91118552:+	0	+
#Deleted in new
chr8	91130298	91130417	ENSG00000214954.8|LRRC69|pc|chr8:91130298:91130417:+	0	+
#Deleted in new
chr8	91130353	91130417	ENSG00000214954.8|LRRC69|pc|chr8:91130353:91130417:+	0	+
#Deleted in new
chr8	91130758	91130836	ENSG00000214954.8|LRRC69|pc|chr8:91130758:91130836:+	0	+
#Deleted in new
chr8	91138766	91139195	ENSG00000214954.8|LRRC69|pc|chr8:91138766:91139195:+	0	+
#Deleted in new
chr8	9116347	9116746	ENSG00000104626.14|ERI1|pc|chr8:9116347:9116746:+	0	+
#Deleted in new
chr8	91209493	91209542	ENSG00000147606.8|SLC26A7|pc|chr8:91209493:91209542:+	0	+
#Deleted in new
chr8	91209494	91209542	ENSG00000147606.8|SLC26A7|pc|chr8:91209494:91209542:+	0	+
#Deleted in new
chr8	91209499	91209542	ENSG00000147606.8|SLC26A7|pc|chr8:91209499:91209542:+	0	+
#Deleted in new
chr8	9145250	9145423	ENSG00000254340.1|AC022784.7|lncRNA|chr8:9145250:9145423:+	0	+
#Deleted in new
chr8	9145250	9145435	ENSG00000254340.1|AC022784.7|lncRNA|chr8:9145250:9145435:+	0	+
#Deleted in new
chr8	9154205	9154343	ENSG00000253426.5|AC022784.3|lncRNA|chr8:9154205:9154343:+	0	+
#Deleted in new
chr8	9154965	9155076	ENSG00000253426.5|AC022784.3|lncRNA|chr8:9154965:9155076:+	0	+
#Deleted in new
chr8	9154965	9155149	ENSG00000253426.5|AC022784.3|lncRNA|chr8:9154965:9155149:+	0	+
#Deleted in new
chr8	9156151	9156304	ENSG00000253426.5|AC022784.3|lncRNA|chr8:9156151:9156304:+	0	+
#Deleted in new
chr8	9156151	9156354	ENSG00000253426.5|AC022784.3|lncRNA|chr8:9156151:9156354:+	0	+
#Deleted in new
chr8	9156151	9156363	ENSG00000253426.5|AC022784.3|lncRNA|chr8:9156151:9156363:+	0	+
#Deleted in new
chr8	9167772	9168136	ENSG00000253426.5|AC022784.3|lncRNA|chr8:9167772:9168136:+	0	+
#Partially deleted in new
chr8	91773069	91773196	ENSG00000253901.1|AC103409.1|lncRNA|chr8:91773069:91773196:-	0	-
#Partially deleted in new
chr8	91773069	91773199	ENSG00000253901.1|AC103409.1|lncRNA|chr8:91773069:91773199:-	0	-
#Deleted in new
chr8	9189010	9189046	ENSG00000248538.6|AC022784.1|lncRNA|chr8:9189010:9189046:+	0	+
#Deleted in new
chr8	9189345	9189586	ENSG00000248538.6|AC022784.1|lncRNA|chr8:9189345:9189586:+	0	+
#Deleted in new
chr8	9189347	9189586	ENSG00000248538.6|AC022784.1|lncRNA|chr8:9189347:9189586:+	0	+
#Deleted in new
chr8	9189504	9189586	ENSG00000248538.6|AC022784.1|lncRNA|chr8:9189504:9189586:+	0	+
#Deleted in new
chr8	9193957	9194032	ENSG00000248538.6|AC022784.1|lncRNA|chr8:9193957:9194032:+	0	+
#Deleted in new
chr8	92003301	92003380	ENSG00000079102.16|RUNX1T1|pc|chr8:92003301:92003380:-	0	-
#Deleted in new
chr8	9202391	9202490	ENSG00000248538.6|AC022784.1|lncRNA|chr8:9202391:9202490:+	0	+
#Deleted in new
chr8	9202498	9202837	ENSG00000248538.6|AC022784.1|lncRNA|chr8:9202498:9202837:+	0	+
#Deleted in new
chr8	9202498	9202854	ENSG00000248538.6|AC022784.1|lncRNA|chr8:9202498:9202854:+	0	+
#Deleted in new
chr8	92081233	92081293	ENSG00000079102.16|RUNX1T1|pc|chr8:92081233:92081293:-	0	-
#Deleted in new
chr8	9249416	9249940	ENSG00000254235.5|AC022784.6|lncRNA|chr8:9249416:9249940:+	0	+
#Deleted in new
chr8	9249539	9249940	ENSG00000254235.5|AC022784.6|lncRNA|chr8:9249539:9249940:+	0	+
#Deleted in new
chr8	9249603	9249940	ENSG00000254235.5|AC022784.6|lncRNA|chr8:9249603:9249940:+	0	+
#Deleted in new
chr8	9255348	9255502	ENSG00000253887.1|AC022784.4|lncRNA|chr8:9255348:9255502:-	0	-
#Deleted in new
chr8	9260027	9260295	ENSG00000253887.1|AC022784.4|lncRNA|chr8:9260027:9260295:-	0	-
#Deleted in new
chr8	92677588	92677683	ENSG00000253177.1|AC104211.1|lncRNA|chr8:92677588:92677683:+	0	+
#Deleted in new
chr8	92678808	92679594	ENSG00000253177.1|AC104211.1|lncRNA|chr8:92678808:92679594:+	0	+
#Deleted in new
chr8	92699741	92699989	ENSG00000248858.7|FLJ46284|lncRNA|chr8:92699741:92699989:-	0	-
#Deleted in new
chr8	92699749	92699989	ENSG00000248858.7|FLJ46284|lncRNA|chr8:92699749:92699989:-	0	-
#Deleted in new
chr8	92723023	92723184	ENSG00000254020.1|AC104211.3|lncRNA|chr8:92723023:92723184:-	0	-
#Deleted in new
chr8	92725002	92725111	ENSG00000254020.1|AC104211.3|lncRNA|chr8:92725002:92725111:-	0	-
#Deleted in new
chr8	92765442	92765578	ENSG00000248858.7|FLJ46284|lncRNA|chr8:92765442:92765578:-	0	-
#Deleted in new
chr8	92765701	92765943	ENSG00000253577.1|AC104211.2|lncRNA|chr8:92765701:92765943:+	0	+
#Partially deleted in new
chr8	92875220	92879502	ENSG00000248858.7|FLJ46284|lncRNA|chr8:92875220:92879502:-	0	-
#Deleted in new
chr8	92877582	92877637	ENSG00000248858.7|FLJ46284|lncRNA|chr8:92877582:92877637:-	0	-
#Deleted in new
chr8	92921415	92921466	ENSG00000253197.5|AC117834.1|lncRNA|chr8:92921415:92921466:+	0	+
#Deleted in new
chr8	92921502	92921660	ENSG00000205133.11|TRIQK|pc|chr8:92921502:92921660:-	0	-
#Deleted in new
chr8	92926289	92926370	ENSG00000253197.5|AC117834.1|lncRNA|chr8:92926289:92926370:+	0	+
#Deleted in new
chr8	92941111	92941292	ENSG00000253197.5|AC117834.1|lncRNA|chr8:92941111:92941292:+	0	+
#Deleted in new
chr8	92960500	92960534	ENSG00000205133.11|TRIQK|pc|chr8:92960500:92960534:-	0	-
#Deleted in new
chr8	92963476	92963865	ENSG00000205133.11|TRIQK|pc|chr8:92963476:92963865:-	0	-
#Deleted in new
chr8	93134094	93134494	ENSG00000279847.3|C8orf87|lncRNA|chr8:93134094:93134494:-	0	-
#Deleted in new
chr8	93134241	93134494	ENSG00000279847.3|C8orf87|lncRNA|chr8:93134241:93134494:-	0	-
#Deleted in new
chr8	93134293	93134494	ENSG00000279847.3|C8orf87|lncRNA|chr8:93134293:93134494:-	0	-
#Deleted in new
chr8	93134743	93134809	ENSG00000279847.3|C8orf87|lncRNA|chr8:93134743:93134809:-	0	-
#Deleted in new
chr8	93134743	93134811	ENSG00000279847.3|C8orf87|lncRNA|chr8:93134743:93134811:-	0	-
#Partially deleted in new
chr8	93215924	93216144	ENSG00000253960.1|AC016885.1|lncRNA|chr8:93215924:93216144:-	0	-
#Deleted in new
chr8	93259666	93259705	ENSG00000254089.1|AC016885.2|lncRNA|chr8:93259666:93259705:+	0	+
#Deleted in new
chr8	93302924	93303034	ENSG00000246662.6|LINC00535|lncRNA|chr8:93302924:93303034:-	0	-
#Deleted in new
chr8	93390536	93390665	ENSG00000246662.6|LINC00535|lncRNA|chr8:93390536:93390665:-	0	-
#Deleted in new
chr8	93391070	93391223	ENSG00000246662.6|LINC00535|lncRNA|chr8:93391070:93391223:-	0	-
#Deleted in new
chr8	93531217	93531305	ENSG00000246662.6|LINC00535|lncRNA|chr8:93531217:93531305:-	0	-
#Deleted in new
chr8	9357601	9357751	ENSG00000253735.1|AC021736.1|lncRNA|chr8:9357601:9357751:-	0	-
#Deleted in new
chr8	9358340	9358441	ENSG00000253735.1|AC021736.1|lncRNA|chr8:9358340:9358441:-	0	-
#Deleted in new
chr8	9361365	9361423	ENSG00000254235.5|AC022784.6|lncRNA|chr8:9361365:9361423:+	0	+
#Deleted in new
chr8	9363261	9363382	ENSG00000254235.5|AC022784.6|lncRNA|chr8:9363261:9363382:+	0	+
#Deleted in new
chr8	93659426	93659579	ENSG00000246662.6|LINC00535|lncRNA|chr8:93659426:93659579:-	0	-
#Deleted in new
chr8	93663345	93663448	ENSG00000246662.6|LINC00535|lncRNA|chr8:93663345:93663448:-	0	-
#Deleted in new
chr8	93682542	93682658	ENSG00000246662.6|LINC00535|lncRNA|chr8:93682542:93682658:-	0	-
#Deleted in new
chr8	93683353	93683431	ENSG00000246662.6|LINC00535|lncRNA|chr8:93683353:93683431:-	0	-
#Deleted in new
chr8	93715377	93716113	ENSG00000271971.1|AC120053.1|lncRNA|chr8:93715377:93716113:-	0	-
#Deleted in new
chr8	93719573	93720113	ENSG00000253854.1|AC010834.3|lncRNA|chr8:93719573:93720113:+	0	+
#Deleted in new
chr8	93720768	93721167	ENSG00000253854.1|AC010834.3|lncRNA|chr8:93720768:93721167:+	0	+
#Deleted in new
chr8	93724509	93724595	ENSG00000188343.12|FAM92A|pc|chr8:93724509:93724595:+	0	+
#Deleted in new
chr8	9372854	9373106	ENSG00000254237.5|AC021242.2|lncRNA|chr8:9372854:9373106:-	0	-
#Deleted in new
chr8	93741192	93741459	ENSG00000253848.1|AC010834.2|lncRNA|chr8:93741192:93741459:+	0	+
#Deleted in new
chr8	93744271	93744534	ENSG00000253848.1|AC010834.2|lncRNA|chr8:93744271:93744534:+	0	+
#Partially deleted in new
chr8	93758482	93759480	ENSG00000164953.15|TMEM67|pc|chr8:93758482:93759480:+	0	+
#Deleted in new
chr8	93759859	93759993	ENSG00000164953.15|TMEM67|pc|chr8:93759859:93759993:+	0	+
#Deleted in new
chr8	93761984	93762023	ENSG00000164953.15|TMEM67|pc|chr8:93761984:93762023:+	0	+
#Deleted in new
chr8	93762949	93763065	ENSG00000164953.15|TMEM67|pc|chr8:93762949:93763065:+	0	+
#Deleted in new
chr8	93769518	93769616	ENSG00000164953.15|TMEM67|pc|chr8:93769518:93769616:+	0	+
#Deleted in new
chr8	93785732	93785812	ENSG00000164953.15|TMEM67|pc|chr8:93785732:93785812:+	0	+
#Deleted in new
chr8	93791881	93792004	ENSG00000164953.15|TMEM67|pc|chr8:93791881:93792004:+	0	+
#Deleted in new
chr8	93794815	93795221	ENSG00000164953.15|TMEM67|pc|chr8:93794815:93795221:+	0	+
#Deleted in new
chr8	93811281	93811311	ENSG00000164953.15|TMEM67|pc|chr8:93811281:93811311:+	0	+
#Deleted in new
chr8	93817715	93818056	ENSG00000164953.15|TMEM67|pc|chr8:93817715:93818056:+	0	+
#Deleted in new
chr8	93818989	93819234	ENSG00000164953.15|TMEM67|pc|chr8:93818989:93819234:+	0	+
#Deleted in new
chr8	93834453	93834811	ENSG00000254057.1|AC084346.1|lncRNA|chr8:93834453:93834811:-	0	-
#Deleted in new
chr8	9383871	9384000	ENSG00000254237.5|AC021242.2|lncRNA|chr8:9383871:9384000:-	0	-
#Deleted in new
chr8	94104268	94104322	ENSG00000253585.1|AP003351.1|lncRNA|chr8:94104268:94104322:-	0	-
#Deleted in new
chr8	9413648	9413714	ENSG00000254235.5|AC022784.6|lncRNA|chr8:9413648:9413714:+	0	+
#Deleted in new
chr8	9415875	9415940	ENSG00000254237.5|AC021242.2|lncRNA|chr8:9415875:9415940:-	0	-
#Deleted in new
chr8	94197229	94197331	ENSG00000079112.9|CDH17|pc|chr8:94197229:94197331:-	0	-
#Deleted in new
chr8	94217197	94217303	ENSG00000079112.9|CDH17|pc|chr8:94217197:94217303:-	0	-
#Deleted in new
chr8	94373011	94373090	ENSG00000197275.13|RAD54B|pc|chr8:94373011:94373090:-	0	-
#Deleted in new
chr8	94467935	94468014	ENSG00000197275.13|RAD54B|pc|chr8:94467935:94468014:-	0	-
#Deleted in new
chr8	94475000	94475054	ENSG00000197275.13|RAD54B|pc|chr8:94475000:94475054:-	0	-
#Deleted in new
chr8	94475000	94475062	ENSG00000197275.13|RAD54B|pc|chr8:94475000:94475062:-	0	-
#Deleted in new
chr8	94475000	94475082	ENSG00000197275.13|RAD54B|pc|chr8:94475000:94475082:-	0	-
#Deleted in new
chr8	94475000	94475109	ENSG00000197275.13|RAD54B|pc|chr8:94475000:94475109:-	0	-
#Deleted in new
chr8	94533627	94533664	ENSG00000254315.1|AC023632.5|lncRNA|chr8:94533627:94533664:+	0	+
#Deleted in new
chr8	94533937	94534391	ENSG00000254315.1|AC023632.5|lncRNA|chr8:94533937:94534391:+	0	+
#Deleted in new
chr8	94568142	94569745	ENSG00000253704.1|AC023632.2|lncRNA|chr8:94568142:94569745:+	0	+
#Deleted in new
chr8	94649537	94649639	ENSG00000104413.15|ESRP1|pc|chr8:94649537:94649639:+	0	+
#Deleted in new
chr8	94744342	94744983	ENSG00000156162.16|DPY19L4|pc|chr8:94744342:94744983:+	0	+
#Deleted in new
chr8	94744484	94745084	ENSG00000156162.16|DPY19L4|pc|chr8:94744484:94745084:+	0	+
#Partially deleted in new
chr8	94792231	94792357	ENSG00000254307.2|AP003692.1|lncRNA|chr8:94792231:94792357:-	0	-
#Partially deleted in new
chr8	94792802	94792963	ENSG00000254307.2|AP003692.1|lncRNA|chr8:94792802:94792963:-	0	-
#Deleted in new
chr8	94813310	94813438	ENSG00000164941.13|INTS8|pc|chr8:94813310:94813438:+	0	+
#Partially deleted in new
chr8	94859510	94860347	ENSG00000164941.13|INTS8|pc|chr8:94859510:94860347:+	0	+
#Deleted in new
chr8	94864692	94864744	ENSG00000164941.13|INTS8|pc|chr8:94864692:94864744:+	0	+
#Partially deleted in new
chr8	94866157	94866351	ENSG00000164941.13|INTS8|pc|chr8:94866157:94866351:+	0	+
#Deleted in new
chr8	94866311	94866351	ENSG00000164941.13|INTS8|pc|chr8:94866311:94866351:+	0	+
#Deleted in new
chr8	94866311	94866353	ENSG00000164941.13|INTS8|pc|chr8:94866311:94866353:+	0	+
#Deleted in new
chr8	94868691	94868813	ENSG00000164941.13|INTS8|pc|chr8:94868691:94868813:+	0	+
#Deleted in new
chr8	94883718	94883921	ENSG00000175305.17|CCNE2|pc|chr8:94883718:94883921:-	0	-
#Deleted in new
chr8	94957994	94958179	ENSG00000156170.12|NDUFAF6|pc|chr8:94957994:94958179:+	0	+
#Deleted in new
chr8	94958007	94958179	ENSG00000156170.12|NDUFAF6|pc|chr8:94958007:94958179:+	0	+
#Deleted in new
chr8	94975317	94975415	ENSG00000156170.12|NDUFAF6|pc|chr8:94975317:94975415:+	0	+
#Deleted in new
chr8	94975816	94975983	ENSG00000156170.12|NDUFAF6|pc|chr8:94975816:94975983:+	0	+
#Deleted in new
chr8	94980854	94980973	ENSG00000156170.12|NDUFAF6|pc|chr8:94980854:94980973:+	0	+
#Deleted in new
chr8	94980858	94980973	ENSG00000156170.12|NDUFAF6|pc|chr8:94980858:94980973:+	0	+
#Deleted in new
chr8	94980907	94980973	ENSG00000156170.12|NDUFAF6|pc|chr8:94980907:94980973:+	0	+
#Deleted in new
chr8	94984034	94984184	ENSG00000156170.12|NDUFAF6|pc|chr8:94984034:94984184:+	0	+
#Deleted in new
chr8	95023169	95023319	ENSG00000156170.12|NDUFAF6|pc|chr8:95023169:95023319:+	0	+
#Deleted in new
chr8	95034007	95034122	ENSG00000156170.12|NDUFAF6|pc|chr8:95034007:95034122:+	0	+
#Deleted in new
chr8	95034648	95034723	ENSG00000156170.12|NDUFAF6|pc|chr8:95034648:95034723:+	0	+
#Partially deleted in new
chr8	95036301	95036401	ENSG00000156170.12|NDUFAF6|pc|chr8:95036301:95036401:+	0	+
#Deleted in new
chr8	95040705	95040927	ENSG00000156170.12|NDUFAF6|pc|chr8:95040705:95040927:+	0	+
#Deleted in new
chr8	95044476	95044595	ENSG00000156170.12|NDUFAF6|pc|chr8:95044476:95044595:+	0	+
#Partially deleted in new
chr8	95066807	95069235	ENSG00000245080.7|AC068189.1|lncRNA|chr8:95066807:95069235:-	0	-
#Deleted in new
chr8	95068923	95069235	ENSG00000245080.7|AC068189.1|lncRNA|chr8:95068923:95069235:-	0	-
#Deleted in new
chr8	95071731	95072018	ENSG00000254248.1|AC068189.2|lncRNA|chr8:95071731:95072018:-	0	-
#Deleted in new
chr8	95072716	95072920	ENSG00000245080.7|AC068189.1|lncRNA|chr8:95072716:95072920:-	0	-
#Deleted in new
chr8	95072928	95073182	ENSG00000245080.7|AC068189.1|lncRNA|chr8:95072928:95073182:-	0	-
#Deleted in new
chr8	95075632	95075752	ENSG00000156170.12|NDUFAF6|pc|chr8:95075632:95075752:+	0	+
#Deleted in new
chr8	95075632	95076168	ENSG00000156170.12|NDUFAF6|pc|chr8:95075632:95076168:+	0	+
#Deleted in new
chr8	95078520	95078644	ENSG00000254248.1|AC068189.2|lncRNA|chr8:95078520:95078644:-	0	-
#Deleted in new
chr8	95085562	95085666	ENSG00000254248.1|AC068189.2|lncRNA|chr8:95085562:95085666:-	0	-
#Deleted in new
chr8	95087645	95087924	ENSG00000254248.1|AC068189.2|lncRNA|chr8:95087645:95087924:-	0	-
#Deleted in new
chr8	95102975	95103011	ENSG00000156170.12|NDUFAF6|pc|chr8:95102975:95103011:+	0	+
#Deleted in new
chr8	95102975	95103457	ENSG00000156170.12|NDUFAF6|pc|chr8:95102975:95103457:+	0	+
#Deleted in new
chr8	95204455	95204923	ENSG00000253773.2|C8orf37-AS1|lncRNA|chr8:95204455:95204923:+	0	+
#Deleted in new
chr8	95205259	95205312	ENSG00000253773.2|C8orf37-AS1|lncRNA|chr8:95205259:95205312:+	0	+
#Deleted in new
chr8	95207006	95207308	ENSG00000253351.1|LINC01298|lncRNA|chr8:95207006:95207308:-	0	-
#Deleted in new
chr8	95216317	95216374	ENSG00000253351.1|LINC01298|lncRNA|chr8:95216317:95216374:-	0	-
#Deleted in new
chr8	95268835	95268890	ENSG00000253773.2|C8orf37-AS1|lncRNA|chr8:95268835:95268890:+	0	+
#Deleted in new
chr8	95301121	95301192	ENSG00000253773.2|C8orf37-AS1|lncRNA|chr8:95301121:95301192:+	0	+
#Deleted in new
chr8	95505405	95505625	ENSG00000253872.1|AC083836.1|lncRNA|chr8:95505405:95505625:+	0	+
#Deleted in new
chr8	95506459	95506507	ENSG00000253872.1|AC083836.1|lncRNA|chr8:95506459:95506507:+	0	+
#Deleted in new
chr8	95610663	95610697	ENSG00000253773.2|C8orf37-AS1|lncRNA|chr8:95610663:95610697:+	0	+
#Deleted in new
chr8	95610663	95610702	ENSG00000253773.2|C8orf37-AS1|lncRNA|chr8:95610663:95610702:+	0	+
#Partially deleted in new
chr8	9575006	9575399	ENSG00000173273.15|TNKS|pc|chr8:9575006:9575399:+	0	+
#Deleted in new
chr8	95798394	95798413	ENSG00000253773.2|C8orf37-AS1|lncRNA|chr8:95798394:95798413:+	0	+
#Deleted in new
chr8	95799257	95799267	ENSG00000253773.2|C8orf37-AS1|lncRNA|chr8:95799257:95799267:+	0	+
#Deleted in new
chr8	95986107	95986939	ENSG00000248762.2|AC012339.1|lncRNA|chr8:95986107:95986939:-	0	-
#Deleted in new
chr8	95992994	95993103	ENSG00000248762.2|AC012339.1|lncRNA|chr8:95992994:95993103:-	0	-
#Deleted in new
chr8	96237906	96238034	ENSG00000254224.1|AP003465.1|lncRNA|chr8:96237906:96238034:+	0	+
#Deleted in new
chr8	96239793	96239855	ENSG00000156469.8|MTERF3|pc|chr8:96239793:96239855:-	0	-
#Partially deleted in new
chr8	96260136	96260247	ENSG00000156469.8|MTERF3|pc|chr8:96260136:96260247:-	0	-
#Deleted in new
chr8	96283596	96283763	ENSG00000156471.12|PTDSS1|pc|chr8:96283596:96283763:+	0	+
#Deleted in new
chr8	96371864	96372230	ENSG00000253105.5|AP003548.1|lncRNA|chr8:96371864:96372230:-	0	-
#Deleted in new
chr8	96372091	96372230	ENSG00000253105.5|AP003548.1|lncRNA|chr8:96372091:96372230:-	0	-
#Deleted in new
chr8	96385972	96386050	ENSG00000253105.5|AP003548.1|lncRNA|chr8:96385972:96386050:-	0	-
#Deleted in new
chr8	96386381	96386648	ENSG00000253105.5|AP003548.1|lncRNA|chr8:96386381:96386648:-	0	-
#Deleted in new
chr8	96387103	96387438	ENSG00000253105.5|AP003548.1|lncRNA|chr8:96387103:96387438:-	0	-
#Deleted in new
chr8	96586386	96586544	ENSG00000169439.11|SDC2|pc|chr8:96586386:96586544:+	0	+
#Deleted in new
chr8	96645226	96645402	ENSG00000104324.15|CPQ|pc|chr8:96645226:96645402:+	0	+
#Deleted in new
chr8	96645370	96645402	ENSG00000104324.15|CPQ|pc|chr8:96645370:96645402:+	0	+
#Deleted in new
chr8	96645374	96645402	ENSG00000104324.15|CPQ|pc|chr8:96645374:96645402:+	0	+
#Deleted in new
chr8	96659283	96659323	ENSG00000104324.15|CPQ|pc|chr8:96659283:96659323:+	0	+
#Deleted in new
chr8	96680442	96680547	ENSG00000104324.15|CPQ|pc|chr8:96680442:96680547:+	0	+
#Deleted in new
chr8	9670118	9670196	ENSG00000173273.15|TNKS|pc|chr8:9670118:9670196:+	0	+
#Deleted in new
chr8	9670726	9670789	ENSG00000173273.15|TNKS|pc|chr8:9670726:9670789:+	0	+
#Deleted in new
chr8	9670979	9671056	ENSG00000173273.15|TNKS|pc|chr8:9670979:9671056:+	0	+
#Deleted in new
chr8	9671145	9671203	ENSG00000173273.15|TNKS|pc|chr8:9671145:9671203:+	0	+
#Deleted in new
chr8	96732291	96732394	ENSG00000104324.15|CPQ|pc|chr8:96732291:96732394:+	0	+
#Deleted in new
chr8	97055526	97055645	ENSG00000104324.15|CPQ|pc|chr8:97055526:97055645:+	0	+
#Deleted in new
chr8	97056405	97056545	ENSG00000104324.15|CPQ|pc|chr8:97056405:97056545:+	0	+
#Partially deleted in new
chr8	97092361	97092710	ENSG00000104324.15|CPQ|pc|chr8:97092361:97092710:+	0	+
#Partially deleted in new
chr8	97092361	97092936	ENSG00000104324.15|CPQ|pc|chr8:97092361:97092936:+	0	+
#Deleted in new
chr8	97132834	97133379	ENSG00000272249.1|AP003117.2|lncRNA|chr8:97132834:97133379:-	0	-
#Deleted in new
chr8	97144169	97144723	ENSG00000270077.1|AP003117.1|lncRNA|chr8:97144169:97144723:+	0	+
#Deleted in new
chr8	97149585	97149654	ENSG00000104324.15|CPQ|pc|chr8:97149585:97149654:+	0	+
#Deleted in new
chr8	9722397	9722500	ENSG00000173273.15|TNKS|pc|chr8:9722397:9722500:+	0	+
#Deleted in new
chr8	9740913	9741115	ENSG00000173273.15|TNKS|pc|chr8:9740913:9741115:+	0	+
#Deleted in new
chr8	9743463	9743572	ENSG00000173273.15|TNKS|pc|chr8:9743463:9743572:+	0	+
#Deleted in new
chr8	9772368	9772423	ENSG00000173273.15|TNKS|pc|chr8:9772368:9772423:+	0	+
#Partially deleted in new
chr8	98042830	98043207	ENSG00000156482.10|RPL30|pc|chr8:98042830:98043207:-	0	-
#Deleted in new
chr8	98043446	98043674	ENSG00000156482.10|RPL30|pc|chr8:98043446:98043674:-	0	-
#Deleted in new
chr8	98043734	98044121	ENSG00000245970.2|AP003352.1|lncRNA|chr8:98043734:98044121:+	0	+
#Deleted in new
chr8	98043938	98044241	ENSG00000156482.10|RPL30|pc|chr8:98043938:98044241:-	0	-
#Deleted in new
chr8	98044076	98044132	ENSG00000156482.10|RPL30|pc|chr8:98044076:98044132:-	0	-
#Partially deleted in new
chr8	98106271	98106631	ENSG00000132541.10|RIDA|pc|chr8:98106271:98106631:-	0	-
#Deleted in new
chr8	98388191	98388247	ENSG00000254267.1|AP003438.1|lncRNA|chr8:98388191:98388247:-	0	-
#Partially deleted in new
chr8	98391400	98391514	ENSG00000278914.1|AP003355.3|lncRNA|chr8:98391400:98391514:-	0	-
#Deleted in new
chr8	98434126	98434318	ENSG00000104375.15|STK3|pc|chr8:98434126:98434318:-	0	-
#Deleted in new
chr8	98594860	98595045	ENSG00000104375.15|STK3|pc|chr8:98594860:98595045:-	0	-
#Deleted in new
chr8	98594860	98595250	ENSG00000104375.15|STK3|pc|chr8:98594860:98595250:-	0	-
#Deleted in new
chr8	98594972	98595118	ENSG00000104375.15|STK3|pc|chr8:98594972:98595118:-	0	-
#Deleted in new
chr8	98601532	98601661	ENSG00000104375.15|STK3|pc|chr8:98601532:98601661:-	0	-
#Deleted in new
chr8	98602178	98602182	ENSG00000104375.15|STK3|pc|chr8:98602178:98602182:-	0	-
#Deleted in new
chr8	98602178	98602255	ENSG00000104375.15|STK3|pc|chr8:98602178:98602255:-	0	-
#Deleted in new
chr8	98602178	98602276	ENSG00000104375.15|STK3|pc|chr8:98602178:98602276:-	0	-
#Deleted in new
chr8	98603252	98603366	ENSG00000253911.1|AP003467.1|lncRNA|chr8:98603252:98603366:+	0	+
#Deleted in new
chr8	98606153	98606340	ENSG00000253911.1|AP003467.1|lncRNA|chr8:98606153:98606340:+	0	+
#Deleted in new
chr8	98651465	98651724	ENSG00000104375.15|STK3|pc|chr8:98651465:98651724:-	0	-
#Deleted in new
chr8	98721073	98721160	ENSG00000104375.15|STK3|pc|chr8:98721073:98721160:-	0	-
#Deleted in new
chr8	98878897	98883834	ENSG00000104375.15|STK3|pc|chr8:98878897:98883834:-	0	-
#Deleted in new
chr8	98883646	98883795	ENSG00000104375.15|STK3|pc|chr8:98883646:98883795:-	0	-
#Deleted in new
chr8	98883646	98883834	ENSG00000104375.15|STK3|pc|chr8:98883646:98883834:-	0	-
#Deleted in new
chr8	98883753	98883834	ENSG00000104375.15|STK3|pc|chr8:98883753:98883834:-	0	-
#Deleted in new
chr8	98967921	98968284	ENSG00000229625.3|AC016877.1|lncRNA|chr8:98967921:98968284:+	0	+
#Deleted in new
chr8	99119351	99119468	ENSG00000253532.1|AC107909.1|lncRNA|chr8:99119351:99119468:+	0	+
#Deleted in new
chr8	99120103	99120581	ENSG00000253532.1|AC107909.1|lncRNA|chr8:99120103:99120581:+	0	+
#Deleted in new
chr8	99209591	99209787	ENSG00000132549.18|VPS13B|pc|chr8:99209591:99209787:+	0	+
#Deleted in new
chr8	99389615	99389720	ENSG00000132549.18|VPS13B|pc|chr8:99389615:99389720:+	0	+
#Deleted in new
chr8	99424266	99424532	ENSG00000132549.18|VPS13B|pc|chr8:99424266:99424532:+	0	+
#Deleted in new
chr8	99429569	99429647	ENSG00000132549.18|VPS13B|pc|chr8:99429569:99429647:+	0	+
#Partially deleted in new
chr8	99878148	99878794	ENSG00000164919.10|COX6C|pc|chr8:99878148:99878794:-	0	-
#Deleted in new
chr8	99885991	99886382	ENSG00000164919.10|COX6C|pc|chr8:99885991:99886382:-	0	-
#Split in new
chr8	99887060	99887618	ENSG00000164919.10|COX6C|pc|chr8:99887060:99887618:-	0	-
#Deleted in new
chr8	99893012	99893135	ENSG00000164919.10|COX6C|pc|chr8:99893012:99893135:-	0	-
#Deleted in new
chr9	100131869	100131954	ENSG00000119509.12|INVS|pc|chr9:100131869:100131954:+	0	+
#Deleted in new
chr9	100214924	100215040	ENSG00000119509.12|INVS|pc|chr9:100214924:100215040:+	0	+
#Deleted in new
chr9	100215400	100215488	ENSG00000119509.12|INVS|pc|chr9:100215400:100215488:+	0	+
#Partially deleted in new
chr9	100303631	100307869	ENSG00000136891.13|TEX10|pc|chr9:100303631:100307869:-	0	-
#Duplicated in new
chr9	101361503	101363015	ENSG00000136881.11|BAAT|pc|chr9:101361503:101363015:-	0	-
#Deleted in new
chr9	101468438	101468608	ENSG00000225376.5|TMEM246-AS1|lncRNA|chr9:101468438:101468608:+	0	+
#Deleted in new
chr9	101468461	101468608	ENSG00000225376.5|TMEM246-AS1|lncRNA|chr9:101468461:101468608:+	0	+
#Deleted in new
chr9	101469321	101469620	ENSG00000225376.5|TMEM246-AS1|lncRNA|chr9:101469321:101469620:+	0	+
#Deleted in new
chr9	101469378	101469620	ENSG00000225376.5|TMEM246-AS1|lncRNA|chr9:101469378:101469620:+	0	+
#Partially deleted in new
chr9	101474875	101475042	ENSG00000225376.5|TMEM246-AS1|lncRNA|chr9:101474875:101475042:+	0	+
#Deleted in new
chr9	101480670	101480725	ENSG00000165152.8|TMEM246|pc|chr9:101480670:101480725:-	0	-
#Deleted in new
chr9	101489113	101489200	ENSG00000165152.8|TMEM246|pc|chr9:101489113:101489200:-	0	-
#Deleted in new
chr9	102472	102541	ENSG00000227917.2|AL449043.1|lncRNA|chr9:102472:102541:-	0	-
#Deleted in new
chr9	102519635	102519708	ENSG00000204250.3|LINC00587|lncRNA|chr9:102519635:102519708:+	0	+
#Deleted in new
chr9	102578270	102578396	ENSG00000204250.3|LINC00587|lncRNA|chr9:102578270:102578396:+	0	+
#Deleted in new
chr9	102643130	102643214	ENSG00000204250.3|LINC00587|lncRNA|chr9:102643130:102643214:+	0	+
#Deleted in new
chr9	102657275	102657514	ENSG00000204250.3|LINC00587|lncRNA|chr9:102657275:102657514:+	0	+
#Deleted in new
chr9	102739	102850	ENSG00000227917.2|AL449043.1|lncRNA|chr9:102739:102850:-	0	-
#Deleted in new
chr9	102739	102941	ENSG00000227917.2|AL449043.1|lncRNA|chr9:102739:102941:-	0	-
#Deleted in new
chr9	103010700	103010805	ENSG00000155833.14|CYLC2|pc|chr9:103010700:103010805:+	0	+
#Deleted in new
chr9	103011981	103012097	ENSG00000155833.14|CYLC2|pc|chr9:103011981:103012097:+	0	+
#Deleted in new
chr9	103012058	103012097	ENSG00000155833.14|CYLC2|pc|chr9:103012058:103012097:+	0	+
#Deleted in new
chr9	103016887	103016961	ENSG00000155833.14|CYLC2|pc|chr9:103016887:103016961:+	0	+
#Deleted in new
chr9	103140522	103143263	ENSG00000225564.6|LINC01492|lncRNA|chr9:103140522:103143263:-	0	-
#Deleted in new
chr9	103144310	103144366	ENSG00000225564.6|LINC01492|lncRNA|chr9:103144310:103144366:-	0	-
#Deleted in new
chr9	103188045	103188116	ENSG00000225564.6|LINC01492|lncRNA|chr9:103188045:103188116:-	0	-
#Deleted in new
chr9	103207172	103207443	ENSG00000225564.6|LINC01492|lncRNA|chr9:103207172:103207443:-	0	-
#Deleted in new
chr9	103243729	103243786	ENSG00000225564.6|LINC01492|lncRNA|chr9:103243729:103243786:-	0	-
#Deleted in new
chr9	103253033	103253266	ENSG00000225564.6|LINC01492|lncRNA|chr9:103253033:103253266:-	0	-
#Deleted in new
chr9	103264523	103264650	ENSG00000225564.6|LINC01492|lncRNA|chr9:103264523:103264650:-	0	-
#Deleted in new
chr9	103276030	103276148	ENSG00000225564.6|LINC01492|lncRNA|chr9:103276030:103276148:-	0	-
#Deleted in new
chr9	103277329	103277499	ENSG00000225564.6|LINC01492|lncRNA|chr9:103277329:103277499:-	0	-
#Deleted in new
chr9	103315141	103315281	ENSG00000225564.6|LINC01492|lncRNA|chr9:103315141:103315281:-	0	-
#Deleted in new
chr9	103364879	103365062	ENSG00000226566.2|AL390962.1|lncRNA|chr9:103364879:103365062:-	0	-
#Partially deleted in new
chr9	104080023	104086541	ENSG00000270332.1|SMC2-AS1|lncRNA|chr9:104080023:104086541:-	0	-
#Partially deleted in new
chr9	104087039	104087155	ENSG00000270332.1|SMC2-AS1|lncRNA|chr9:104087039:104087155:-	0	-
#Partially deleted in new
chr9	104135867	104136060	ENSG00000136824.18|SMC2|pc|chr9:104135867:104136060:+	0	+
#Deleted in new
chr9	104520828	104521175	ENSG00000283001.1|AL450426.1|lncRNA|chr9:104520828:104521175:+	0	+
#Duplicated in new
chr9	104753598	104754700	ENSG00000136783.9|NIPSNAP3A|pc|chr9:104753598:104754700:+	0	+
#Deleted in new
chr9	104771233	104771316	ENSG00000165028.11|NIPSNAP3B|pc|chr9:104771233:104771316:+	0	+
#Deleted in new
chr9	105386687	105386741	ENSG00000070214.15|SLC44A1|pc|chr9:105386687:105386741:+	0	+
#Partially deleted in new
chr9	105471903	105473320	ENSG00000106701.11|FSD1L|pc|chr9:105471903:105473320:+	0	+
#Deleted in new
chr9	105500658	105500763	ENSG00000106701.11|FSD1L|pc|chr9:105500658:105500763:+	0	+
#Deleted in new
chr9	105554034	105554343	ENSG00000228317.1|AL158070.1|lncRNA|chr9:105554034:105554343:-	0	-
#Deleted in new
chr9	105557113	105557175	ENSG00000228317.1|AL158070.1|lncRNA|chr9:105557113:105557175:-	0	-
#Deleted in new
chr9	105598085	105598183	ENSG00000106692.13|FKTN|pc|chr9:105598085:105598183:+	0	+
#Deleted in new
chr9	105600917	105601041	ENSG00000106692.13|FKTN|pc|chr9:105600917:105601041:+	0	+
#Deleted in new
chr9	105603698	105603816	ENSG00000106692.13|FKTN|pc|chr9:105603698:105603816:+	0	+
#Deleted in new
chr9	105700983	105701643	ENSG00000095209.11|TMEM38B|pc|chr9:105700983:105701643:+	0	+
#Deleted in new
chr9	105702706	105702822	ENSG00000095209.11|TMEM38B|pc|chr9:105702706:105702822:+	0	+
#Deleted in new
chr9	105749072	105749282	ENSG00000095209.11|TMEM38B|pc|chr9:105749072:105749282:+	0	+
#Deleted in new
chr9	105749075	105749111	ENSG00000095209.11|TMEM38B|pc|chr9:105749075:105749111:+	0	+
#Deleted in new
chr9	106061353	106061619	ENSG00000225002.2|AL732323.1|lncRNA|chr9:106061353:106061619:-	0	-
#Deleted in new
chr9	106064635	106064825	ENSG00000225002.2|AL732323.1|lncRNA|chr9:106064635:106064825:-	0	-
#Partially deleted in new
chr9	10617860	10620420	ENSG00000226717.2|PTPRD-AS2|lncRNA|chr9:10617860:10620420:+	0	+
#Deleted in new
chr9	106279100	106279190	ENSG00000234323.6|LINC01505|lncRNA|chr9:106279100:106279190:+	0	+
#Deleted in new
chr9	10631749	10631785	ENSG00000232035.1|AL135790.1|lncRNA|chr9:10631749:10631785:-	0	-
#Deleted in new
chr9	10632082	10632203	ENSG00000232035.1|AL135790.1|lncRNA|chr9:10632082:10632203:-	0	-
#Deleted in new
chr9	106500356	106500505	ENSG00000234323.6|LINC01505|lncRNA|chr9:106500356:106500505:+	0	+
#Partially deleted in new
chr9	106603755	106604795	ENSG00000234323.6|LINC01505|lncRNA|chr9:106603755:106604795:+	0	+
#Deleted in new
chr9	106639338	106639436	ENSG00000234323.6|LINC01505|lncRNA|chr9:106639338:106639436:+	0	+
#Deleted in new
chr9	106672868	106672939	ENSG00000234229.8|LINC01505|lncRNA|chr9:106672868:106672939:+	0	+
#Deleted in new
chr9	106672868	106672939	ENSG00000234323.6|LINC01505|lncRNA|chr9:106672868:106672939:+	0	+
#Deleted in new
chr9	106679557	106679798	ENSG00000234323.6|LINC01505|lncRNA|chr9:106679557:106679798:+	0	+
#Split in new
chr9	106738915	106740875	ENSG00000234323.6|LINC01505|lncRNA|chr9:106738915:106740875:+	0	+
#Partially deleted in new
chr9	106933174	106933229	ENSG00000148143.12|ZNF462|pc|chr9:106933174:106933229:+	0	+
#Deleted in new
chr9	107061149	107061224	ENSG00000230782.1|AL807761.4|lncRNA|chr9:107061149:107061224:-	0	-
#Deleted in new
chr9	107118089	107118197	ENSG00000226047.1|AL807761.3|lncRNA|chr9:107118089:107118197:-	0	-
#Deleted in new
chr9	107121579	107121705	ENSG00000226047.1|AL807761.3|lncRNA|chr9:107121579:107121705:-	0	-
#Deleted in new
chr9	107420283	107420420	ENSG00000226825.1|LINC01509|lncRNA|chr9:107420283:107420420:-	0	-
#Deleted in new
chr9	108252153	108252268	ENSG00000230030.1|AL353742.1|lncRNA|chr9:108252153:108252268:-	0	-
#Deleted in new
chr9	108701369	108701442	ENSG00000231678.2|AL358779.1|lncRNA|chr9:108701369:108701442:-	0	-
#Deleted in new
chr9	108875632	108875735	ENSG00000070061.14|ELP1|pc|chr9:108875632:108875735:-	0	-
#Deleted in new
chr9	108889644	108889684	ENSG00000070061.14|ELP1|pc|chr9:108889644:108889684:-	0	-
#Partially deleted in new
chr9	108939548	108940968	ENSG00000119328.11|FAM206A|pc|chr9:108939548:108940968:+	0	+
#Deleted in new
chr9	108950506	108950744	ENSG00000119328.11|FAM206A|pc|chr9:108950506:108950744:+	0	+
#Deleted in new
chr9	108963497	108963555	ENSG00000119326.14|CTNNAL1|pc|chr9:108963497:108963555:-	0	-
#Partially deleted in new
chr9	109375465	109375614	ENSG00000070159.13|PTPN3|pc|chr9:109375465:109375614:-	0	-
#Deleted in new
chr9	109392598	109392946	ENSG00000070159.13|PTPN3|pc|chr9:109392598:109392946:-	0	-
#Deleted in new
chr9	10948371	10948481	ENSG00000270372.1|AL162413.1|lncRNA|chr9:10948371:10948481:-	0	-
#Deleted in new
chr9	109765412	109765560	ENSG00000232939.1|AL158829.1|lncRNA|chr9:109765412:109765560:-	0	-
#Deleted in new
chr9	110322460	110324001	ENSG00000204193.10|TXNDC8|pc|chr9:110322460:110324001:-	0	-
#Deleted in new
chr9	110599474	110599528	ENSG00000232896.1|AL592463.1|lncRNA|chr9:110599474:110599528:+	0	+
#Deleted in new
chr9	110604417	110604488	ENSG00000232896.1|AL592463.1|lncRNA|chr9:110604417:110604488:+	0	+
#Deleted in new
chr9	110945373	110945401	ENSG00000198121.13|LPAR1|pc|chr9:110945373:110945401:-	0	-
#Deleted in new
chr9	111139245	111139619	ENSG00000227531.1|AL162414.1|lncRNA|chr9:111139245:111139619:-	0	-
#Partially deleted in new
chr9	111365553	111366327	ENSG00000136813.14|KIAA0368|pc|chr9:111365553:111366327:-	0	-
#Deleted in new
chr9	111539445	111539761	ENSG00000173258.12|ZNF483|pc|chr9:111539445:111539761:+	0	+
#Deleted in new
chr9	111549721	111549799	ENSG00000106853.18|PTGR1|pc|chr9:111549721:111549799:-	0	-
#Deleted in new
chr9	111574191	111574394	ENSG00000224644.1|AL135787.1|lncRNA|chr9:111574191:111574394:+	0	+
#Partially deleted in new
chr9	111576364	111577844	ENSG00000173258.12|ZNF483|pc|chr9:111576364:111577844:+	0	+
#Deleted in new
chr9	111589263	111589382	ENSG00000106853.18|PTGR1|pc|chr9:111589263:111589382:-	0	-
#Partially deleted in new
chr9	111592297	111592982	ENSG00000106853.18|PTGR1|pc|chr9:111592297:111592982:-	0	-
#Partially deleted in new
chr9	111592366	111592982	ENSG00000106853.18|PTGR1|pc|chr9:111592366:111592982:-	0	-
#Deleted in new
chr9	111783387	111783493	ENSG00000165181.16|C9orf84|pc|chr9:111783387:111783493:-	0	-
#Deleted in new
chr9	111915758	111915836	ENSG00000148154.9|UGCG|pc|chr9:111915758:111915836:+	0	+
#Deleted in new
chr9	112035860	112035994	ENSG00000259953.1|AL138756.1|lncRNA|chr9:112035860:112035994:-	0	-
#Deleted in new
chr9	112036650	112037115	ENSG00000259953.1|AL138756.1|lncRNA|chr9:112036650:112037115:-	0	-
#Deleted in new
chr9	112414001	112414036	ENSG00000119471.14|HSDL2|pc|chr9:112414001:112414036:+	0	+
#Deleted in new
chr9	112469722	112469837	ENSG00000230185.4|C9orf147|lncRNA|chr9:112469722:112469837:-	0	-
#Partially deleted in new
chr9	112470431	112472405	ENSG00000119471.14|HSDL2|pc|chr9:112470431:112472405:+	0	+
#Partially deleted in new
chr9	112470431	112472410	ENSG00000119471.14|HSDL2|pc|chr9:112470431:112472410:+	0	+
#Deleted in new
chr9	112484441	112484624	ENSG00000230185.4|C9orf147|lncRNA|chr9:112484441:112484624:-	0	-
#Deleted in new
chr9	112484455	112484626	ENSG00000230185.4|C9orf147|lncRNA|chr9:112484455:112484626:-	0	-
#Deleted in new
chr9	112484528	112484624	ENSG00000230185.4|C9orf147|lncRNA|chr9:112484528:112484624:-	0	-
#Deleted in new
chr9	112484929	112485163	ENSG00000230185.4|C9orf147|lncRNA|chr9:112484929:112485163:-	0	-
#Deleted in new
chr9	112484960	112485561	ENSG00000230185.4|C9orf147|lncRNA|chr9:112484960:112485561:-	0	-
#Deleted in new
chr9	112701787	112701880	ENSG00000148153.13|INIP|pc|chr9:112701787:112701880:-	0	-
#Deleted in new
chr9	112701831	112701880	ENSG00000148153.13|INIP|pc|chr9:112701831:112701880:-	0	-
#Deleted in new
chr9	11275313	11275536	ENSG00000230365.1|AL451129.1|lncRNA|chr9:11275313:11275536:-	0	-
#Deleted in new
chr9	11276252	11276314	ENSG00000230365.1|AL451129.1|lncRNA|chr9:11276252:11276314:-	0	-
#Deleted in new
chr9	112856707	112856803	ENSG00000148158.16|SNX30|pc|chr9:112856707:112856803:+	0	+
#Deleted in new
chr9	112875831	112875929	ENSG00000148158.16|SNX30|pc|chr9:112875831:112875929:+	0	+
#Partially deleted in new
chr9	112877118	112880472	ENSG00000148158.16|SNX30|pc|chr9:112877118:112880472:+	0	+
#Deleted in new
chr9	112881427	112881671	ENSG00000148158.16|SNX30|pc|chr9:112881427:112881671:+	0	+
#Partially deleted in new
chr9	112885157	112885767	ENSG00000271631.1|AL139041.1|lncRNA|chr9:112885157:112885767:+	0	+
#Deleted in new
chr9	112964897	112965053	ENSG00000228623.5|ZNF883|pc|chr9:112964897:112965053:-	0	-
#Deleted in new
chr9	112968821	112968941	ENSG00000228623.5|ZNF883|pc|chr9:112968821:112968941:-	0	-
#Deleted in new
chr9	112969339	112969380	ENSG00000228623.5|ZNF883|pc|chr9:112969339:112969380:-	0	-
#Deleted in new
chr9	112972079	112972179	ENSG00000228623.5|ZNF883|pc|chr9:112972079:112972179:-	0	-
#Deleted in new
chr9	112973149	112973759	ENSG00000228623.5|ZNF883|pc|chr9:112973149:112973759:-	0	-
#Deleted in new
chr9	112975895	112976017	ENSG00000228623.5|ZNF883|pc|chr9:112975895:112976017:-	0	-
#Deleted in new
chr9	112977387	112977529	ENSG00000228623.5|ZNF883|pc|chr9:112977387:112977529:-	0	-
#Deleted in new
chr9	112982900	112982947	ENSG00000228623.5|ZNF883|pc|chr9:112982900:112982947:-	0	-
#Deleted in new
chr9	112983459	112983579	ENSG00000228623.5|ZNF883|pc|chr9:112983459:112983579:-	0	-
#Partially deleted in new
chr9	112998120	112999091	ENSG00000228623.5|ZNF883|pc|chr9:112998120:112999091:-	0	-
#Partially deleted in new
chr9	112998120	112999138	ENSG00000228623.5|ZNF883|pc|chr9:112998120:112999138:-	0	-
#Deleted in new
chr9	112998702	112999011	ENSG00000228623.5|ZNF883|pc|chr9:112998702:112999011:-	0	-
#Deleted in new
chr9	112999664	112999814	ENSG00000228623.5|ZNF883|pc|chr9:112999664:112999814:-	0	-
#Deleted in new
chr9	113001993	113002073	ENSG00000228623.5|ZNF883|pc|chr9:113001993:113002073:-	0	-
#Deleted in new
chr9	113011140	113011227	ENSG00000228623.5|ZNF883|pc|chr9:113011140:113011227:-	0	-
#Deleted in new
chr9	113012149	113012195	ENSG00000228623.5|ZNF883|pc|chr9:113012149:113012195:-	0	-
#Deleted in new
chr9	113012149	113012227	ENSG00000228623.5|ZNF883|pc|chr9:113012149:113012227:-	0	-
#Split in new
chr9	113103337	113110153	ENSG00000225684.3|FAM225B|lncRNA|chr9:113103337:113110153:-	0	-
#Split in new
chr9	113104722	113110153	ENSG00000225684.3|FAM225B|lncRNA|chr9:113104722:113110153:-	0	-
#Deleted in new
chr9	113110909	113111016	ENSG00000225684.3|FAM225B|lncRNA|chr9:113110909:113111016:-	0	-
#Deleted in new
chr9	113110909	113111473	ENSG00000225684.3|FAM225B|lncRNA|chr9:113110909:113111473:-	0	-
#Deleted in new
chr9	113111409	113111500	ENSG00000225684.3|FAM225B|lncRNA|chr9:113111409:113111500:-	0	-
#Deleted in new
chr9	113113072	113113163	ENSG00000231528.2|FAM225A|lncRNA|chr9:113113072:113113163:+	0	+
#Deleted in new
chr9	113113072	113113663	ENSG00000231528.2|FAM225A|lncRNA|chr9:113113072:113113663:+	0	+
#Deleted in new
chr9	113113556	113113663	ENSG00000231528.2|FAM225A|lncRNA|chr9:113113556:113113663:+	0	+
#Partially deleted in new
chr9	113114419	113119846	ENSG00000231528.2|FAM225A|lncRNA|chr9:113114419:113119846:+	0	+
#Partially deleted in new
chr9	113114419	113119928	ENSG00000231528.2|FAM225A|lncRNA|chr9:113114419:113119928:+	0	+
#Deleted in new
chr9	113158043	113158096	ENSG00000136867.10|SLC31A2|pc|chr9:113158043:113158096:+	0	+
#Partially deleted in new
chr9	113227277	113227660	ENSG00000136868.10|SLC31A1|pc|chr9:113227277:113227660:+	0	+
#Partially deleted in new
chr9	113255834	113256043	ENSG00000176386.8|CDC26|pc|chr9:113255834:113256043:-	0	-
#Partially deleted in new
chr9	113256454	113256548	ENSG00000176386.8|CDC26|pc|chr9:113256454:113256548:-	0	-
#Deleted in new
chr9	113301671	113301751	ENSG00000165188.13|RNF183|pc|chr9:113301671:113301751:-	0	-
#Deleted in new
chr9	113301671	113301888	ENSG00000165188.13|RNF183|pc|chr9:113301671:113301888:-	0	-
#Deleted in new
chr9	113301981	113302026	ENSG00000165188.13|RNF183|pc|chr9:113301981:113302026:-	0	-
#Partially deleted in new
chr9	113313221	113316909	ENSG00000148225.15|WDR31|pc|chr9:113313221:113316909:-	0	-
#Deleted in new
chr9	113314510	113314728	ENSG00000148225.15|WDR31|pc|chr9:113314510:113314728:-	0	-
#Partially deleted in new
chr9	113315670	113316909	ENSG00000148225.15|WDR31|pc|chr9:113315670:113316909:-	0	-
#Partially deleted in new
chr9	113315683	113316909	ENSG00000148225.15|WDR31|pc|chr9:113315683:113316909:-	0	-
#Partially deleted in new
chr9	113315890	113316909	ENSG00000148225.15|WDR31|pc|chr9:113315890:113316909:-	0	-
#Deleted in new
chr9	113375452	113375526	ENSG00000119431.9|HDHD3|pc|chr9:113375452:113375526:-	0	-
#Deleted in new
chr9	113375452	113375567	ENSG00000119431.9|HDHD3|pc|chr9:113375452:113375567:-	0	-
#Deleted in new
chr9	113375452	113376175	ENSG00000119431.9|HDHD3|pc|chr9:113375452:113376175:-	0	-
#Deleted in new
chr9	113376728	113376925	ENSG00000119431.9|HDHD3|pc|chr9:113376728:113376925:-	0	-
#Deleted in new
chr9	113376728	113376999	ENSG00000119431.9|HDHD3|pc|chr9:113376728:113376999:-	0	-
#Partially deleted in new
chr9	113386316	113388361	ENSG00000148218.15|ALAD|pc|chr9:113386316:113388361:-	0	-
#Partially deleted in new
chr9	113386318	113388361	ENSG00000148218.15|ALAD|pc|chr9:113386318:113388361:-	0	-
#Partially deleted in new
chr9	113397045	113397402	ENSG00000148218.15|ALAD|pc|chr9:113397045:113397402:-	0	-
#Deleted in new
chr9	113398077	113398124	ENSG00000148218.15|ALAD|pc|chr9:113398077:113398124:-	0	-
#Deleted in new
chr9	113460244	113460336	ENSG00000138835.22|RGS3|pc|chr9:113460244:113460336:+	0	+
#Deleted in new
chr9	113460256	113460336	ENSG00000138835.22|RGS3|pc|chr9:113460256:113460336:+	0	+
#Deleted in new
chr9	113461706	113461860	ENSG00000138835.22|RGS3|pc|chr9:113461706:113461860:+	0	+
#Deleted in new
chr9	113581558	113581658	ENSG00000138835.22|RGS3|pc|chr9:113581558:113581658:+	0	+
#Deleted in new
chr9	113619227	113619411	ENSG00000233817.1|AL162727.1|lncRNA|chr9:113619227:113619411:+	0	+
#Deleted in new
chr9	113693	113754	ENSG00000231808.2|LINC01388|lncRNA|chr9:113693:113754:-	0	-
#Partially deleted in new
chr9	114030803	114030882	ENSG00000157657.14|ZNF618|pc|chr9:114030803:114030882:+	0	+
#Deleted in new
chr9	114060126	114060270	ENSG00000106927.11|AMBP|pc|chr9:114060126:114060270:-	0	-
#Deleted in new
chr9	114326291	114326475	ENSG00000229314.5|ORM1|pc|chr9:114326291:114326475:+	0	+
#Partially deleted in new
chr9	115112610	115112757	ENSG00000041982.15|TNC|pc|chr9:115112610:115112757:-	0	-
#Deleted in new
chr9	115233175	115233336	ENSG00000173077.14|DEC1|pc|chr9:115233175:115233336:+	0	+
#Partially deleted in new
chr9	115253112	115253163	ENSG00000234692.1|AL355601.1|lncRNA|chr9:115253112:115253163:-	0	-
#Deleted in new
chr9	115312211	115314480	ENSG00000173077.14|DEC1|pc|chr9:115312211:115314480:+	0	+
#Deleted in new
chr9	115400345	115400432	ENSG00000173077.14|DEC1|pc|chr9:115400345:115400432:+	0	+
#Deleted in new
chr9	115400358	115400432	ENSG00000173077.14|DEC1|pc|chr9:115400358:115400432:+	0	+
#Deleted in new
chr9	115744156	115744239	ENSG00000228714.2|AL731897.1|lncRNA|chr9:115744156:115744239:-	0	-
#Deleted in new
chr9	115904370	115904642	ENSG00000204148.3|LINC00474|lncRNA|chr9:115904370:115904642:-	0	-
#Partially deleted in new
chr9	116373198	116373709	ENSG00000182752.9|PAPPA|pc|chr9:116373198:116373709:+	0	+
#Deleted in new
chr9	116540439	116540739	ENSG00000229105.1|ASTN2-AS1|lncRNA|chr9:116540439:116540739:+	0	+
#Deleted in new
chr9	116543672	116543841	ENSG00000229105.1|ASTN2-AS1|lncRNA|chr9:116543672:116543841:+	0	+
#Deleted in new
chr9	116550986	116551093	ENSG00000229105.1|ASTN2-AS1|lncRNA|chr9:116550986:116551093:+	0	+
#Deleted in new
chr9	116552109	116552202	ENSG00000229105.1|ASTN2-AS1|lncRNA|chr9:116552109:116552202:+	0	+
#Deleted in new
chr9	116610899	116613605	ENSG00000148219.16|ASTN2|pc|chr9:116610899:116613605:-	0	-
#Deleted in new
chr9	116697372	116697433	ENSG00000119401.10|TRIM32|pc|chr9:116697372:116697433:+	0	+
#Deleted in new
chr9	117708196	117708318	ENSG00000136869.13|TLR4|pc|chr9:117708196:117708318:+	0	+
#Deleted in new
chr9	117708198	117708318	ENSG00000136869.13|TLR4|pc|chr9:117708198:117708318:+	0	+
#Deleted in new
chr9	117867762	117868071	ENSG00000228512.2|AL160272.1|lncRNA|chr9:117867762:117868071:+	0	+
#Deleted in new
chr9	117897182	117897256	ENSG00000231901.1|AL354754.1|lncRNA|chr9:117897182:117897256:-	0	-
#Deleted in new
chr9	118687751	118688003	ENSG00000225050.1|AL355592.1|lncRNA|chr9:118687751:118688003:-	0	-
#Deleted in new
chr9	120440297	120440419	ENSG00000136861.17|CDK5RAP2|pc|chr9:120440297:120440419:-	0	-
#Deleted in new
chr9	120517756	120517886	ENSG00000136861.17|CDK5RAP2|pc|chr9:120517756:120517886:-	0	-
#Deleted in new
chr9	120751977	120753311	ENSG00000119402.16|FBXW2|pc|chr9:120751977:120753311:-	0	-
#Partially deleted in new
chr9	120756973	120764847	ENSG00000119402.16|FBXW2|pc|chr9:120756973:120764847:-	0	-
#Deleted in new
chr9	120815495	120815788	ENSG00000095261.13|PSMD5|pc|chr9:120815495:120815788:-	0	-
#Partially deleted in new
chr9	120868259	120868356	ENSG00000119403.13|PHF19|pc|chr9:120868259:120868356:-	0	-
#Deleted in new
chr9	120894787	120894896	ENSG00000119403.13|PHF19|pc|chr9:120894787:120894896:-	0	-
#Deleted in new
chr9	120914507	120914572	ENSG00000056558.10|TRAF1|pc|chr9:120914507:120914572:-	0	-
#Deleted in new
chr9	120979558	120979719	ENSG00000106804.7|C5|pc|chr9:120979558:120979719:-	0	-
#Deleted in new
chr9	12098659	12099015	ENSG00000224935.1|AL589678.1|lncRNA|chr9:12098659:12099015:-	0	-
#Deleted in new
chr9	121080305	121080478	ENSG00000119397.16|CNTRL|pc|chr9:121080305:121080478:+	0	+
#Deleted in new
chr9	121161282	121161505	ENSG00000119397.16|CNTRL|pc|chr9:121161282:121161505:+	0	+
#Deleted in new
chr9	121207793	121207897	ENSG00000148180.19|GSN|pc|chr9:121207793:121207897:+	0	+
#Deleted in new
chr9	121207799	121207897	ENSG00000148180.19|GSN|pc|chr9:121207799:121207897:+	0	+
#Deleted in new
chr9	121222199	121222253	ENSG00000119396.10|RAB14|pc|chr9:121222199:121222253:-	0	-
#Deleted in new
chr9	121222909	121223014	ENSG00000119396.10|RAB14|pc|chr9:121222909:121223014:-	0	-
#Partially deleted in new
chr9	121231164	121231303	ENSG00000148180.19|GSN|pc|chr9:121231164:121231303:+	0	+
#Deleted in new
chr9	121248275	121248323	ENSG00000148180.19|GSN|pc|chr9:121248275:121248323:+	0	+
#Deleted in new
chr9	121265153	121265186	ENSG00000148180.19|GSN|pc|chr9:121265153:121265186:+	0	+
#Deleted in new
chr9	121265153	121265297	ENSG00000148180.19|GSN|pc|chr9:121265153:121265297:+	0	+
#Deleted in new
chr9	121283318	121283392	ENSG00000148180.19|GSN|pc|chr9:121283318:121283392:+	0	+
#Deleted in new
chr9	121286591	121286761	ENSG00000148180.19|GSN|pc|chr9:121286591:121286761:+	0	+
#Deleted in new
chr9	121370490	121370823	ENSG00000227355.2|AL359644.1|lncRNA|chr9:121370490:121370823:+	0	+
#Deleted in new
chr9	121377930	121378008	ENSG00000227355.2|AL359644.1|lncRNA|chr9:121377930:121378008:+	0	+
#Deleted in new
chr9	121377930	121378057	ENSG00000227355.2|AL359644.1|lncRNA|chr9:121377930:121378057:+	0	+
#Deleted in new
chr9	121574890	121575412	ENSG00000229854.1|AL357936.1|lncRNA|chr9:121574890:121575412:-	0	-
#Deleted in new
chr9	12159116	12159147	ENSG00000224935.1|AL589678.1|lncRNA|chr9:12159116:12159147:-	0	-
#Deleted in new
chr9	122164614	122164647	ENSG00000185681.12|MORN5|pc|chr9:122164614:122164647:+	0	+
#Partially deleted in new
chr9	122400969	122401233	ENSG00000233616.2|AL359636.3|lncRNA|chr9:122400969:122401233:-	0	-
#Deleted in new
chr9	122404671	122404791	ENSG00000229245.2|AL359636.1|lncRNA|chr9:122404671:122404791:+	0	+
#Deleted in new
chr9	122415713	122415782	ENSG00000229245.2|AL359636.1|lncRNA|chr9:122415713:122415782:+	0	+
#Deleted in new
chr9	122416767	122416885	ENSG00000229245.2|AL359636.1|lncRNA|chr9:122416767:122416885:+	0	+
#Deleted in new
chr9	122447428	122447545	ENSG00000229245.2|AL359636.1|lncRNA|chr9:122447428:122447545:+	0	+
#Deleted in new
chr9	122448929	122448977	ENSG00000229245.2|AL359636.1|lncRNA|chr9:122448929:122448977:+	0	+
#Deleted in new
chr9	122471357	122471413	ENSG00000231465.2|AL359636.2|lncRNA|chr9:122471357:122471413:+	0	+
#Deleted in new
chr9	122475077	122475154	ENSG00000231465.2|AL359636.2|lncRNA|chr9:122475077:122475154:+	0	+
#Duplicated in new
chr9	122510801	122511743	ENSG00000197233.7|OR1J2|pc|chr9:122510801:122511743:+	0	+
#Deleted in new
chr9	122576765	122576901	ENSG00000171496.4|OR1L8|pc|chr9:122576765:122576901:-	0	-
#Deleted in new
chr9	122578323	122578445	ENSG00000171496.4|OR1L8|pc|chr9:122578323:122578445:-	0	-
#Deleted in new
chr9	122583320	122583384	ENSG00000171496.4|OR1L8|pc|chr9:122583320:122583384:-	0	-
#Deleted in new
chr9	122619357	122619567	ENSG00000234156.1|AL162254.1|lncRNA|chr9:122619357:122619567:+	0	+
#Deleted in new
chr9	122620447	122620515	ENSG00000234156.1|AL162254.1|lncRNA|chr9:122620447:122620515:+	0	+
#Deleted in new
chr9	122637102	122637236	ENSG00000234156.1|AL162254.1|lncRNA|chr9:122637102:122637236:+	0	+
#Deleted in new
chr9	122637105	122637236	ENSG00000234156.1|AL162254.1|lncRNA|chr9:122637105:122637236:+	0	+
#Deleted in new
chr9	122639597	122639678	ENSG00000234156.1|AL162254.1|lncRNA|chr9:122639597:122639678:+	0	+
#Deleted in new
chr9	122639597	122639685	ENSG00000234156.1|AL162254.1|lncRNA|chr9:122639597:122639685:+	0	+
#Partially deleted in new
chr9	122742302	122742373	ENSG00000171459.4|OR1L6|pc|chr9:122742302:122742373:+	0	+
#Partially deleted in new
chr9	122873785	122875368	ENSG00000056586.15|RC3H2|pc|chr9:122873785:122875368:-	0	-
#Deleted in new
chr9	122971664	122971952	ENSG00000011454.16|RABGAP1|pc|chr9:122971664:122971952:+	0	+
#Deleted in new
chr9	123180867	123180975	ENSG00000165209.18|STRBP|pc|chr9:123180867:123180975:-	0	-
#Deleted in new
chr9	123212584	123212708	ENSG00000165209.18|STRBP|pc|chr9:123212584:123212708:-	0	-
#Deleted in new
chr9	123213588	123213908	ENSG00000165209.18|STRBP|pc|chr9:123213588:123213908:-	0	-
#Partially deleted in new
chr9	123236829	123236966	ENSG00000165209.18|STRBP|pc|chr9:123236829:123236966:-	0	-
#Deleted in new
chr9	123461913	123462023	ENSG00000119522.16|DENND1A|pc|chr9:123461913:123462023:-	0	-
#Deleted in new
chr9	124031623	124031873	ENSG00000234921.1|AC006450.2|lncRNA|chr9:124031623:124031873:-	0	-
#Deleted in new
chr9	124031971	124032067	ENSG00000234921.1|AC006450.2|lncRNA|chr9:124031971:124032067:-	0	-
#Deleted in new
chr9	124299984	124300157	ENSG00000119408.16|NEK6|pc|chr9:124299984:124300157:+	0	+
#Partially deleted in new
chr9	124500947	124500986	ENSG00000136931.9|NR5A1|pc|chr9:124500947:124500986:-	0	-
#Deleted in new
chr9	124698244	124698631	ENSG00000224020.1|MIR181A2HG|lncRNA|chr9:124698244:124698631:+	0	+
#Deleted in new
chr9	124858275	124858537	ENSG00000136942.14|RPL35|pc|chr9:124858275:124858537:-	0	-
#Deleted in new
chr9	124858457	124858537	ENSG00000136942.14|RPL35|pc|chr9:124858457:124858537:-	0	-
#Deleted in new
chr9	124858468	124858537	ENSG00000136942.14|RPL35|pc|chr9:124858468:124858537:-	0	-
#Partially deleted in new
chr9	124860978	124861555	ENSG00000136942.14|RPL35|pc|chr9:124860978:124861555:-	0	-
#Deleted in new
chr9	124863987	124864107	ENSG00000136950.13|ARPC5L|pc|chr9:124863987:124864107:+	0	+
#Deleted in new
chr9	124974174	124974276	ENSG00000173611.17|SCAI|pc|chr9:124974174:124974276:-	0	-
#Deleted in new
chr9	125065989	125066058	ENSG00000173611.17|SCAI|pc|chr9:125065989:125066058:-	0	-
#Deleted in new
chr9	125171908	125172001	ENSG00000119414.11|PPP6C|pc|chr9:125171908:125172001:-	0	-
#Partially deleted in new
chr9	125220538	125222387	ENSG00000136933.16|RABEPK|pc|chr9:125220538:125222387:+	0	+
#Deleted in new
chr9	125254577	125254671	ENSG00000239705.1|AL354710.2|lncRNA|chr9:125254577:125254671:+	0	+
#Deleted in new
chr9	125256963	125257018	ENSG00000239705.1|AL354710.2|lncRNA|chr9:125256963:125257018:+	0	+
#Deleted in new
chr9	125287761	125287883	ENSG00000165219.21|GAPVD1|pc|chr9:125287761:125287883:+	0	+
#Deleted in new
chr9	125335171	125335252	ENSG00000165219.21|GAPVD1|pc|chr9:125335171:125335252:+	0	+
#Partially deleted in new
chr9	125359419	125359847	ENSG00000165219.21|GAPVD1|pc|chr9:125359419:125359847:+	0	+
#Deleted in new
chr9	125451057	125451101	ENSG00000119487.16|MAPKAP1|pc|chr9:125451057:125451101:-	0	-
#Deleted in new
chr9	125478079	125478182	ENSG00000119487.16|MAPKAP1|pc|chr9:125478079:125478182:-	0	-
#Deleted in new
chr9	125567578	125567993	ENSG00000227068.1|AL162584.1|lncRNA|chr9:125567578:125567993:+	0	+
#Deleted in new
chr9	125568760	125568849	ENSG00000227068.1|AL162584.1|lncRNA|chr9:125568760:125568849:+	0	+
#Deleted in new
chr9	125572894	125573023	ENSG00000227068.1|AL162584.1|lncRNA|chr9:125572894:125573023:+	0	+
#Duplicated in new
chr9	125595509	125595646	ENSG00000119487.16|MAPKAP1|pc|chr9:125595509:125595646:-	0	-
#Deleted in new
chr9	125650363	125650417	ENSG00000119487.16|MAPKAP1|pc|chr9:125650363:125650417:-	0	-
#Deleted in new
chr9	125650363	125650461	ENSG00000119487.16|MAPKAP1|pc|chr9:125650363:125650461:-	0	-
#Deleted in new
chr9	125696216	125696404	ENSG00000119487.16|MAPKAP1|pc|chr9:125696216:125696404:-	0	-
#Deleted in new
chr9	126270120	126271992	ENSG00000228392.1|AL162391.1|lncRNA|chr9:126270120:126271992:-	0	-
#Deleted in new
chr9	126272242	126272400	ENSG00000228392.1|AL162391.1|lncRNA|chr9:126272242:126272400:-	0	-
#Deleted in new
chr9	126448025	126448409	ENSG00000196814.14|MVB12B|pc|chr9:126448025:126448409:+	0	+
#Deleted in new
chr9	126448141	126448409	ENSG00000196814.14|MVB12B|pc|chr9:126448141:126448409:+	0	+
#Partially deleted in new
chr9	126530183	126530343	ENSG00000226078.1|AL356309.1|lncRNA|chr9:126530183:126530343:+	0	+
#Deleted in new
chr9	126589593	126589656	ENSG00000224842.2|AL161908.1|lncRNA|chr9:126589593:126589656:-	0	-
#Deleted in new
chr9	126590409	126590543	ENSG00000224842.2|AL161908.1|lncRNA|chr9:126590409:126590543:-	0	-
#Partially deleted in new
chr9	126609143	126609214	ENSG00000224842.2|AL161908.1|lncRNA|chr9:126609143:126609214:-	0	-
#Partially deleted in new
chr9	126836219	126836412	ENSG00000169155.9|ZBTB43|pc|chr9:126836219:126836412:+	0	+
#Deleted in new
chr9	127016659	127016961	ENSG00000136828.18|RALGPS1|pc|chr9:127016659:127016961:+	0	+
#Deleted in new
chr9	127177896	127178426	ENSG00000136828.18|RALGPS1|pc|chr9:127177896:127178426:+	0	+
#Partially deleted in new
chr9	127183866	127184336	ENSG00000136828.18|RALGPS1|pc|chr9:127183866:127184336:+	0	+
#Deleted in new
chr9	127216034	127216170	ENSG00000228487.2|AL450263.1|lncRNA|chr9:127216034:127216170:-	0	-
#Deleted in new
chr9	127216034	127216179	ENSG00000228487.2|AL450263.1|lncRNA|chr9:127216034:127216179:-	0	-
#Deleted in new
chr9	127245336	127245420	ENSG00000136895.18|GARNL3|pc|chr9:127245336:127245420:+	0	+
#Deleted in new
chr9	127356428	127356505	ENSG00000136895.18|GARNL3|pc|chr9:127356428:127356505:+	0	+
#Partially deleted in new
chr9	127361715	127365366	ENSG00000136895.18|GARNL3|pc|chr9:127361715:127365366:+	0	+
#Deleted in new
chr9	127363948	127364033	ENSG00000136895.18|GARNL3|pc|chr9:127363948:127364033:+	0	+
#Deleted in new
chr9	127366769	127367397	ENSG00000271833.1|AL445222.1|lncRNA|chr9:127366769:127367397:+	0	+
#Deleted in new
chr9	127398182	127398334	ENSG00000136856.17|SLC2A8|pc|chr9:127398182:127398334:+	0	+
#Deleted in new
chr9	127408149	127408419	ENSG00000136856.17|SLC2A8|pc|chr9:127408149:127408419:+	0	+
#Deleted in new
chr9	127408149	127408424	ENSG00000136856.17|SLC2A8|pc|chr9:127408149:127408424:+	0	+
#Partially deleted in new
chr9	127424373	127424803	ENSG00000196152.10|ZNF79|pc|chr9:127424373:127424803:+	0	+
#Partially deleted in new
chr9	127424373	127424910	ENSG00000196152.10|ZNF79|pc|chr9:127424373:127424910:+	0	+
#Partially deleted in new
chr9	127424381	127424803	ENSG00000196152.10|ZNF79|pc|chr9:127424381:127424803:+	0	+
#Deleted in new
chr9	127428551	127428660	ENSG00000196152.10|ZNF79|pc|chr9:127428551:127428660:+	0	+
#Deleted in new
chr9	127435089	127435216	ENSG00000196152.10|ZNF79|pc|chr9:127435089:127435216:+	0	+
#Deleted in new
chr9	127486404	127486694	ENSG00000148356.13|LRSAM1|pc|chr9:127486404:127486694:+	0	+
#Deleted in new
chr9	127639427	127639617	ENSG00000136854.19|STXBP1|pc|chr9:127639427:127639617:+	0	+
#Deleted in new
chr9	127642342	127642563	ENSG00000136854.19|STXBP1|pc|chr9:127642342:127642563:+	0	+
#Deleted in new
chr9	127642468	127642563	ENSG00000136854.19|STXBP1|pc|chr9:127642468:127642563:+	0	+
#Deleted in new
chr9	127654941	127654964	ENSG00000136854.19|STXBP1|pc|chr9:127654941:127654964:+	0	+
#Deleted in new
chr9	127692977	127693308	ENSG00000187024.14|PTRH1|pc|chr9:127692977:127693308:-	0	-
#Deleted in new
chr9	127694926	127694959	ENSG00000187024.14|PTRH1|pc|chr9:127694926:127694959:-	0	-
#Deleted in new
chr9	127694926	127695141	ENSG00000187024.14|PTRH1|pc|chr9:127694926:127695141:-	0	-
#Deleted in new
chr9	127694993	127695231	ENSG00000136854.19|STXBP1|pc|chr9:127694993:127695231:+	0	+
#Deleted in new
chr9	127694993	127696027	ENSG00000136854.19|STXBP1|pc|chr9:127694993:127696027:+	0	+
#Deleted in new
chr9	127695378	127696027	ENSG00000136854.19|STXBP1|pc|chr9:127695378:127696027:+	0	+
#Deleted in new
chr9	127821194	127821498	ENSG00000225032.5|AL162586.1|lncRNA|chr9:127821194:127821498:+	0	+
#Deleted in new
chr9	127821289	127821431	ENSG00000225032.5|AL162586.1|lncRNA|chr9:127821289:127821431:+	0	+
#Deleted in new
chr9	127822337	127822520	ENSG00000225032.5|AL162586.1|lncRNA|chr9:127822337:127822520:+	0	+
#Partially deleted in new
chr9	127903014	127905324	ENSG00000160408.14|ST6GALNAC6|pc|chr9:127903014:127905324:-	0	-
#Partially deleted in new
chr9	127925495	127925823	ENSG00000167103.11|PIP5KL1|pc|chr9:127925495:127925823:-	0	-
#Deleted in new
chr9	127934502	127934645	ENSG00000227218.7|AL157935.1|lncRNA|chr9:127934502:127934645:+	0	+
#Deleted in new
chr9	127938749	127939241	ENSG00000227218.7|AL157935.1|lncRNA|chr9:127938749:127939241:+	0	+
#Partially deleted in new
chr9	127939735	127940561	ENSG00000227218.7|AL157935.1|lncRNA|chr9:127939735:127940561:+	0	+
#Partially deleted in new
chr9	127953268	127953604	ENSG00000167106.11|FAM102A|pc|chr9:127953268:127953604:-	0	-
#Deleted in new
chr9	128039134	128039307	ENSG00000230848.1|AL360268.2|lncRNA|chr9:128039134:128039307:-	0	-
#Partially deleted in new
chr9	128099274	128099385	ENSG00000148339.12|SLC25A25|pc|chr9:128099274:128099385:+	0	+
#Partially deleted in new
chr9	128108580	128112649	ENSG00000234771.3|SLC25A25-AS1|lncRNA|chr9:128108580:128112649:-	0	-
#Deleted in new
chr9	128113477	128114686	ENSG00000234771.3|SLC25A25-AS1|lncRNA|chr9:128113477:128114686:-	0	-
#Deleted in new
chr9	128128054	128128114	ENSG00000148334.14|PTGES2|pc|chr9:128128054:128128114:-	0	-
#Partially deleted in new
chr9	128128054	128128146	ENSG00000148334.14|PTGES2|pc|chr9:128128054:128128146:-	0	-
#Split in new
chr9	128128528	128130628	ENSG00000232850.3|PTGES2-AS1|lncRNA|chr9:128128528:128130628:+	0	+
#Deleted in new
chr9	128167538	128167683	ENSG00000148337.20|CIZ1|pc|chr9:128167538:128167683:-	0	-
#Deleted in new
chr9	128198310	128198367	ENSG00000148337.20|CIZ1|pc|chr9:128198310:128198367:-	0	-
#Deleted in new
chr9	128199919	128200184	ENSG00000148337.20|CIZ1|pc|chr9:128199919:128200184:-	0	-
#Deleted in new
chr9	128221109	128221216	ENSG00000106976.20|DNM1|pc|chr9:128221109:128221216:+	0	+
#Deleted in new
chr9	128234815	128234935	ENSG00000106976.20|DNM1|pc|chr9:128234815:128234935:+	0	+
#Deleted in new
chr9	128247923	128247935	ENSG00000106976.20|DNM1|pc|chr9:128247923:128247935:+	0	+
#Deleted in new
chr9	128278633	128278681	ENSG00000175854.11|SWI5|pc|chr9:128278633:128278681:+	0	+
#Partially deleted in new
chr9	128305160	128309875	ENSG00000167112.9|TRUB2|pc|chr9:128305160:128309875:-	0	-
#Partially deleted in new
chr9	128330411	128332943	ENSG00000167113.10|COQ4|pc|chr9:128330411:128332943:+	0	+
#Deleted in new
chr9	128427651	128427779	ENSG00000167123.18|CERCAM|pc|chr9:128427651:128427779:+	0	+
#Deleted in new
chr9	128430744	128430944	ENSG00000167123.18|CERCAM|pc|chr9:128430744:128430944:+	0	+
#Deleted in new
chr9	128431597	128432006	ENSG00000273186.1|AL359091.4|lncRNA|chr9:128431597:128432006:+	0	+
#Deleted in new
chr9	128532664	128532691	ENSG00000119392.14|GLE1|pc|chr9:128532664:128532691:+	0	+
#Deleted in new
chr9	128536826	128536955	ENSG00000228395.1|AL356481.1|lncRNA|chr9:128536826:128536955:-	0	-
#Deleted in new
chr9	128543378	128543684	ENSG00000228395.1|AL356481.1|lncRNA|chr9:128543378:128543684:-	0	-
#Deleted in new
chr9	128543378	128543686	ENSG00000228395.1|AL356481.1|lncRNA|chr9:128543378:128543686:-	0	-
#Deleted in new
chr9	128595892	128596158	ENSG00000280474.1|AL356481.2|lncRNA|chr9:128595892:128596158:+	0	+
#Deleted in new
chr9	128596371	128596633	ENSG00000280474.1|AL356481.2|lncRNA|chr9:128596371:128596633:+	0	+
#Partially deleted in new
chr9	128598962	128599495	ENSG00000197694.15|SPTAN1|pc|chr9:128598962:128599495:+	0	+
#Partially deleted in new
chr9	128598962	128599704	ENSG00000197694.15|SPTAN1|pc|chr9:128598962:128599704:+	0	+
#Partially deleted in new
chr9	128598962	128600115	ENSG00000197694.15|SPTAN1|pc|chr9:128598962:128600115:+	0	+
#Deleted in new
chr9	128601344	128601400	ENSG00000197694.15|SPTAN1|pc|chr9:128601344:128601400:+	0	+
#Deleted in new
chr9	128621666	128622102	ENSG00000197694.15|SPTAN1|pc|chr9:128621666:128622102:+	0	+
#Deleted in new
chr9	128626999	128627175	ENSG00000197694.15|SPTAN1|pc|chr9:128626999:128627175:+	0	+
#Deleted in new
chr9	128631431	128631685	ENSG00000280758.1|AL356481.3|lncRNA|chr9:128631431:128631685:-	0	-
#Deleted in new
chr9	128772351	128772414	ENSG00000160445.10|ZER1|pc|chr9:128772351:128772414:-	0	-
#Deleted in new
chr9	128840610	128840672	ENSG00000171097.13|KYAT1|pc|chr9:128840610:128840672:-	0	-
#Deleted in new
chr9	128846679	128846857	ENSG00000171097.13|KYAT1|pc|chr9:128846679:128846857:-	0	-
#Deleted in new
chr9	128846679	128846859	ENSG00000171097.13|KYAT1|pc|chr9:128846679:128846859:-	0	-
#Deleted in new
chr9	128859946	128860532	ENSG00000171097.13|KYAT1|pc|chr9:128859946:128860532:-	0	-
#Partially deleted in new
chr9	128920894	128921668	ENSG00000175287.18|PHYHD1|pc|chr9:128920894:128921668:+	0	+
#Partially deleted in new
chr9	128920965	128921284	ENSG00000175287.18|PHYHD1|pc|chr9:128920965:128921284:+	0	+
#Deleted in new
chr9	128921185	128921284	ENSG00000175287.18|PHYHD1|pc|chr9:128921185:128921284:+	0	+
#Partially deleted in new
chr9	128921407	128921668	ENSG00000175287.18|PHYHD1|pc|chr9:128921407:128921668:+	0	+
#Deleted in new
chr9	128921411	128921601	ENSG00000175287.18|PHYHD1|pc|chr9:128921411:128921601:+	0	+
#Deleted in new
chr9	128921481	128921601	ENSG00000175287.18|PHYHD1|pc|chr9:128921481:128921601:+	0	+
#Partially deleted in new
chr9	128921481	128921668	ENSG00000175287.18|PHYHD1|pc|chr9:128921481:128921668:+	0	+
#Partially deleted in new
chr9	129004501	129004998	ENSG00000267834.1|AL592211.1|lncRNA|chr9:129004501:129004998:-	0	-
#Deleted in new
chr9	129015739	129015860	ENSG00000148341.17|SH3GLB2|pc|chr9:129015739:129015860:-	0	-
#Deleted in new
chr9	129015739	129015864	ENSG00000148341.17|SH3GLB2|pc|chr9:129015739:129015864:-	0	-
#Deleted in new
chr9	129039787	129039886	ENSG00000148343.18|MIGA2|pc|chr9:129039787:129039886:+	0	+
#Deleted in new
chr9	129047104	129047224	ENSG00000148343.18|MIGA2|pc|chr9:129047104:129047224:+	0	+
#Deleted in new
chr9	129051299	129051420	ENSG00000148343.18|MIGA2|pc|chr9:129051299:129051420:+	0	+
#Deleted in new
chr9	129119021	129119141	ENSG00000119383.19|PTPA|pc|chr9:129119021:129119141:+	0	+
#Deleted in new
chr9	129127963	129128068	ENSG00000119383.19|PTPA|pc|chr9:129127963:129128068:+	0	+
#Deleted in new
chr9	129201314	129201555	ENSG00000204055.4|AL158151.1|lncRNA|chr9:129201314:129201555:+	0	+
#Deleted in new
chr9	129208868	129209186	ENSG00000204055.4|AL158151.1|lncRNA|chr9:129208868:129209186:+	0	+
#Deleted in new
chr9	129208868	129210548	ENSG00000204055.4|AL158151.1|lncRNA|chr9:129208868:129210548:+	0	+
#Partially deleted in new
chr9	129261330	129261581	ENSG00000241084.1|AL161785.3|lncRNA|chr9:129261330:129261581:+	0	+
#Deleted in new
chr9	129282457	129282692	ENSG00000224307.1|AL161785.1|lncRNA|chr9:129282457:129282692:+	0	+
#Deleted in new
chr9	129282929	129283058	ENSG00000224307.1|AL161785.1|lncRNA|chr9:129282929:129283058:+	0	+
#Deleted in new
chr9	129285509	129285728	ENSG00000224307.1|AL161785.1|lncRNA|chr9:129285509:129285728:+	0	+
#Partially deleted in new
chr9	129333905	129334198	ENSG00000233901.5|LINC01503|lncRNA|chr9:129333905:129334198:+	0	+
#Partially deleted in new
chr9	129333974	129334198	ENSG00000233901.5|LINC01503|lncRNA|chr9:129333974:129334198:+	0	+
#Deleted in new
chr9	129338791	129338901	ENSG00000233901.5|LINC01503|lncRNA|chr9:129338791:129338901:+	0	+
#Deleted in new
chr9	129338791	129338917	ENSG00000233901.5|LINC01503|lncRNA|chr9:129338791:129338917:+	0	+
#Deleted in new
chr9	129341735	129342043	ENSG00000233901.5|LINC01503|lncRNA|chr9:129341735:129342043:+	0	+
#Deleted in new
chr9	129341842	129342043	ENSG00000233901.5|LINC01503|lncRNA|chr9:129341842:129342043:+	0	+
#Deleted in new
chr9	129347225	129347399	ENSG00000233901.5|LINC01503|lncRNA|chr9:129347225:129347399:+	0	+
#Deleted in new
chr9	129347225	129347464	ENSG00000233901.5|LINC01503|lncRNA|chr9:129347225:129347464:+	0	+
#Deleted in new
chr9	129355457	129355598	ENSG00000233901.5|LINC01503|lncRNA|chr9:129355457:129355598:+	0	+
#Deleted in new
chr9	129438762	129439118	ENSG00000226355.1|AL353803.1|lncRNA|chr9:129438762:129439118:+	0	+
#Deleted in new
chr9	129446631	129447054	ENSG00000230676.1|AL353803.2|lncRNA|chr9:129446631:129447054:-	0	-
#Deleted in new
chr9	129446803	129447290	ENSG00000230676.1|AL353803.2|lncRNA|chr9:129446803:129447290:-	0	-
#Partially deleted in new
chr9	129488911	129489299	ENSG00000204054.13|LINC00963|lncRNA|chr9:129488911:129489299:+	0	+
#Deleted in new
chr9	129489099	129489299	ENSG00000204054.13|LINC00963|lncRNA|chr9:129489099:129489299:+	0	+
#Deleted in new
chr9	129489106	129489299	ENSG00000204054.13|LINC00963|lncRNA|chr9:129489106:129489299:+	0	+
#Deleted in new
chr9	129489208	129489299	ENSG00000204054.13|LINC00963|lncRNA|chr9:129489208:129489299:+	0	+
#Deleted in new
chr9	129491088	129491128	ENSG00000204054.13|LINC00963|lncRNA|chr9:129491088:129491128:+	0	+
#Deleted in new
chr9	129501989	129502212	ENSG00000204054.13|LINC00963|lncRNA|chr9:129501989:129502212:+	0	+
#Deleted in new
chr9	129502071	129502519	ENSG00000204054.13|LINC00963|lncRNA|chr9:129502071:129502519:+	0	+
#Deleted in new
chr9	129502396	129502519	ENSG00000204054.13|LINC00963|lncRNA|chr9:129502396:129502519:+	0	+
#Deleted in new
chr9	129502396	129502608	ENSG00000204054.13|LINC00963|lncRNA|chr9:129502396:129502608:+	0	+
#Deleted in new
chr9	129502396	129502696	ENSG00000204054.13|LINC00963|lncRNA|chr9:129502396:129502696:+	0	+
#Deleted in new
chr9	129502396	129502857	ENSG00000204054.13|LINC00963|lncRNA|chr9:129502396:129502857:+	0	+
#Deleted in new
chr9	129502396	129503139	ENSG00000204054.13|LINC00963|lncRNA|chr9:129502396:129503139:+	0	+
#Deleted in new
chr9	129502915	129502998	ENSG00000204054.13|LINC00963|lncRNA|chr9:129502915:129502998:+	0	+
#Deleted in new
chr9	129503001	129503139	ENSG00000204054.13|LINC00963|lncRNA|chr9:129503001:129503139:+	0	+
#Deleted in new
chr9	129503322	129503425	ENSG00000204054.13|LINC00963|lncRNA|chr9:129503322:129503425:+	0	+
#Deleted in new
chr9	129503322	129503430	ENSG00000204054.13|LINC00963|lncRNA|chr9:129503322:129503430:+	0	+
#Deleted in new
chr9	129503322	129503573	ENSG00000204054.13|LINC00963|lncRNA|chr9:129503322:129503573:+	0	+
#Deleted in new
chr9	129503322	129503597	ENSG00000204054.13|LINC00963|lncRNA|chr9:129503322:129503597:+	0	+
#Deleted in new
chr9	129503322	129503622	ENSG00000204054.13|LINC00963|lncRNA|chr9:129503322:129503622:+	0	+
#Deleted in new
chr9	129503322	129503665	ENSG00000204054.13|LINC00963|lncRNA|chr9:129503322:129503665:+	0	+
#Deleted in new
chr9	129503322	129503672	ENSG00000204054.13|LINC00963|lncRNA|chr9:129503322:129503672:+	0	+
#Deleted in new
chr9	129503322	129504274	ENSG00000204054.13|LINC00963|lncRNA|chr9:129503322:129504274:+	0	+
#Partially deleted in new
chr9	129503322	129512679	ENSG00000204054.13|LINC00963|lncRNA|chr9:129503322:129512679:+	0	+
#Deleted in new
chr9	129504891	129505043	ENSG00000204054.13|LINC00963|lncRNA|chr9:129504891:129505043:+	0	+
#Deleted in new
chr9	129508370	129508516	ENSG00000204054.13|LINC00963|lncRNA|chr9:129508370:129508516:+	0	+
#Deleted in new
chr9	129513418	129513517	ENSG00000204054.13|LINC00963|lncRNA|chr9:129513418:129513517:+	0	+
#Deleted in new
chr9	129513418	129513584	ENSG00000204054.13|LINC00963|lncRNA|chr9:129513418:129513584:+	0	+
#Deleted in new
chr9	129513418	129513668	ENSG00000204054.13|LINC00963|lncRNA|chr9:129513418:129513668:+	0	+
#Deleted in new
chr9	129513418	129513670	ENSG00000204054.13|LINC00963|lncRNA|chr9:129513418:129513670:+	0	+
#Deleted in new
chr9	129513418	129513673	ENSG00000204054.13|LINC00963|lncRNA|chr9:129513418:129513673:+	0	+
#Deleted in new
chr9	129513418	129513683	ENSG00000204054.13|LINC00963|lncRNA|chr9:129513418:129513683:+	0	+
#Deleted in new
chr9	129513527	129513686	ENSG00000204054.13|LINC00963|lncRNA|chr9:129513527:129513686:+	0	+
#Deleted in new
chr9	129575408	129575598	ENSG00000227619.1|AL391056.1|lncRNA|chr9:129575408:129575598:+	0	+
#Deleted in new
chr9	129580050	129580319	ENSG00000227619.1|AL391056.1|lncRNA|chr9:129580050:129580319:+	0	+
#Deleted in new
chr9	129580478	129580558	ENSG00000227619.1|AL391056.1|lncRNA|chr9:129580478:129580558:+	0	+
#Deleted in new
chr9	129582646	129584556	ENSG00000227619.1|AL391056.1|lncRNA|chr9:129582646:129584556:+	0	+
#Deleted in new
chr9	129608883	129609178	ENSG00000148335.14|NTMT1|pc|chr9:129608883:129609178:+	0	+
#Deleted in new
chr9	129718572	129718635	ENSG00000236024.1|PRRX2-AS1|lncRNA|chr9:129718572:129718635:-	0	-
#Deleted in new
chr9	129749520	129749642	ENSG00000148344.10|PTGES|pc|chr9:129749520:129749642:-	0	-
#Duplicated in new
chr9	129813607	129814222	ENSG00000136827.11|TOR1A|pc|chr9:129813607:129814222:-	0	-
#Split in new
chr9	129821375	129822846	ENSG00000136827.11|TOR1A|pc|chr9:129821375:129822846:-	0	-
#Deleted in new
chr9	129823305	129823593	ENSG00000136827.11|TOR1A|pc|chr9:129823305:129823593:-	0	-
#Duplicated in new
chr9	129823907	129824134	ENSG00000136827.11|TOR1A|pc|chr9:129823907:129824134:-	0	-
#Partially deleted in new
chr9	129827289	129828252	ENSG00000136819.15|C9orf78|pc|chr9:129827289:129828252:-	0	-
#Partially deleted in new
chr9	129828427	129829303	ENSG00000136819.15|C9orf78|pc|chr9:129828427:129829303:-	0	-
#Partially deleted in new
chr9	129828441	129829303	ENSG00000136819.15|C9orf78|pc|chr9:129828441:129829303:-	0	-
#Partially deleted in new
chr9	129829404	129830685	ENSG00000136819.15|C9orf78|pc|chr9:129829404:129830685:-	0	-
#Deleted in new
chr9	129831409	129831732	ENSG00000136819.15|C9orf78|pc|chr9:129831409:129831732:-	0	-
#Deleted in new
chr9	129849799	129849924	ENSG00000136878.12|USP20|pc|chr9:129849799:129849924:+	0	+
#Deleted in new
chr9	129849812	129849924	ENSG00000136878.12|USP20|pc|chr9:129849812:129849924:+	0	+
#Partially deleted in new
chr9	129880466	129881828	ENSG00000136878.12|USP20|pc|chr9:129880466:129881828:+	0	+
#Partially deleted in new
chr9	129880466	129881838	ENSG00000136878.12|USP20|pc|chr9:129880466:129881838:+	0	+
#Deleted in new
chr9	129936342	129936541	ENSG00000230684.1|AL158207.2|lncRNA|chr9:129936342:129936541:+	0	+
#Deleted in new
chr9	130110369	130110422	ENSG00000148358.19|GPR107|pc|chr9:130110369:130110422:+	0	+
#Deleted in new
chr9	130110369	130110426	ENSG00000148358.19|GPR107|pc|chr9:130110369:130110426:+	0	+
#Deleted in new
chr9	130114572	130114663	ENSG00000148358.19|GPR107|pc|chr9:130114572:130114663:+	0	+
#Deleted in new
chr9	130114576	130114663	ENSG00000148358.19|GPR107|pc|chr9:130114576:130114663:+	0	+
#Partially deleted in new
chr9	130129590	130129987	ENSG00000148358.19|GPR107|pc|chr9:130129590:130129987:+	0	+
#Deleted in new
chr9	130132985	130133236	ENSG00000148358.19|GPR107|pc|chr9:130132985:130133236:+	0	+
#Partially deleted in new
chr9	130140609	130142891	ENSG00000196979.1|AL360004.1|lncRNA|chr9:130140609:130142891:-	0	-
#Partially deleted in new
chr9	130143243	130144219	ENSG00000196979.1|AL360004.1|lncRNA|chr9:130143243:130144219:-	0	-
#Deleted in new
chr9	130945222	130945520	ENSG00000236658.1|AL161733.1|lncRNA|chr9:130945222:130945520:+	0	+
#Deleted in new
chr9	131106187	131106265	ENSG00000126878.12|AIF1L|pc|chr9:131106187:131106265:+	0	+
#Deleted in new
chr9	131113880	131114277	ENSG00000126878.12|AIF1L|pc|chr9:131113880:131114277:+	0	+
#Partially deleted in new
chr9	131128527	131128808	ENSG00000126883.16|NUP214|pc|chr9:131128527:131128808:+	0	+
#Deleted in new
chr9	131136468	131136822	ENSG00000236986.6|AL157938.2|lncRNA|chr9:131136468:131136822:-	0	-
#Deleted in new
chr9	131136564	131136822	ENSG00000236986.6|AL157938.2|lncRNA|chr9:131136564:131136822:-	0	-
#Deleted in new
chr9	131136721	131136822	ENSG00000236986.6|AL157938.2|lncRNA|chr9:131136721:131136822:-	0	-
#Deleted in new
chr9	131141677	131141766	ENSG00000236986.6|AL157938.2|lncRNA|chr9:131141677:131141766:-	0	-
#Deleted in new
chr9	131165164	131165270	ENSG00000236986.6|AL157938.2|lncRNA|chr9:131165164:131165270:-	0	-
#Deleted in new
chr9	131167077	131167314	ENSG00000236986.6|AL157938.2|lncRNA|chr9:131167077:131167314:-	0	-
#Deleted in new
chr9	131167077	131167320	ENSG00000236986.6|AL157938.2|lncRNA|chr9:131167077:131167320:-	0	-
#Deleted in new
chr9	131167077	131167325	ENSG00000236986.6|AL157938.2|lncRNA|chr9:131167077:131167325:-	0	-
#Deleted in new
chr9	131167077	131167408	ENSG00000236986.6|AL157938.2|lncRNA|chr9:131167077:131167408:-	0	-
#Deleted in new
chr9	131167077	131167465	ENSG00000236986.6|AL157938.2|lncRNA|chr9:131167077:131167465:-	0	-
#Deleted in new
chr9	131167077	131167505	ENSG00000236986.6|AL157938.2|lncRNA|chr9:131167077:131167505:-	0	-
#Partially deleted in new
chr9	131189909	131192687	ENSG00000246851.1|AL157938.3|lncRNA|chr9:131189909:131192687:-	0	-
#Deleted in new
chr9	131190120	131190480	ENSG00000126883.16|NUP214|pc|chr9:131190120:131190480:+	0	+
#Deleted in new
chr9	131190125	131190480	ENSG00000126883.16|NUP214|pc|chr9:131190125:131190480:+	0	+
#Deleted in new
chr9	131190138	131190480	ENSG00000126883.16|NUP214|pc|chr9:131190138:131190480:+	0	+
#Deleted in new
chr9	131190142	131190172	ENSG00000126883.16|NUP214|pc|chr9:131190142:131190172:+	0	+
#Deleted in new
chr9	131193899	131194205	ENSG00000246851.1|AL157938.3|lncRNA|chr9:131193899:131194205:-	0	-
#Deleted in new
chr9	131229662	131229825	ENSG00000126883.16|NUP214|pc|chr9:131229662:131229825:+	0	+
#Deleted in new
chr9	131262690	131262737	ENSG00000126882.12|FAM78A|pc|chr9:131262690:131262737:-	0	-
#Deleted in new
chr9	131263477	131263599	ENSG00000126882.12|FAM78A|pc|chr9:131263477:131263599:-	0	-
#Partially deleted in new
chr9	131263477	131264715	ENSG00000126882.12|FAM78A|pc|chr9:131263477:131264715:-	0	-
#Deleted in new
chr9	131264583	131264627	ENSG00000126882.12|FAM78A|pc|chr9:131264583:131264627:-	0	-
#Partially deleted in new
chr9	131447661	131448198	ENSG00000130723.18|PRRC2B|pc|chr9:131447661:131448198:+	0	+
#Deleted in new
chr9	131516557	131516968	ENSG00000230289.1|AL358781.2|lncRNA|chr9:131516557:131516968:-	0	-
#Deleted in new
chr9	131518218	131518353	ENSG00000130714.15|POMT1|pc|chr9:131518218:131518353:+	0	+
#Deleted in new
chr9	131526444	131526503	ENSG00000130717.12|UCK1|pc|chr9:131526444:131526503:-	0	-
#Duplicated in new
chr9	131531066	131531237	ENSG00000130717.12|UCK1|pc|chr9:131531066:131531237:-	0	-
#Duplicated in new
chr9	131531066	131531244	ENSG00000130717.12|UCK1|pc|chr9:131531066:131531244:-	0	-
#Duplicated in new
chr9	131531066	131531259	ENSG00000130717.12|UCK1|pc|chr9:131531066:131531259:-	0	-
#Duplicated in new
chr9	131531066	131531264	ENSG00000130717.12|UCK1|pc|chr9:131531066:131531264:-	0	-
#Duplicated in new
chr9	131531066	131531268	ENSG00000130717.12|UCK1|pc|chr9:131531066:131531268:-	0	-
#Deleted in new
chr9	131816191	131816387	ENSG00000236687.1|AL160271.1|lncRNA|chr9:131816191:131816387:+	0	+
#Deleted in new
chr9	131819850	131820136	ENSG00000236687.1|AL160271.1|lncRNA|chr9:131819850:131820136:+	0	+
#Deleted in new
chr9	131820641	131820988	ENSG00000236687.1|AL160271.1|lncRNA|chr9:131820641:131820988:+	0	+
#Deleted in new
chr9	132266126	132266249	ENSG00000107290.13|SETX|pc|chr9:132266126:132266249:-	0	-
#Deleted in new
chr9	132354916	132354985	ENSG00000107290.13|SETX|pc|chr9:132354916:132354985:-	0	-
#Partially deleted in new
chr9	132375547	132376168	ENSG00000125482.12|TTF1|pc|chr9:132375547:132376168:-	0	-
#Deleted in new
chr9	132513258	132513406	ENSG00000188523.8|CFAP77|pc|chr9:132513258:132513406:+	0	+
#Deleted in new
chr9	13279029	13279187	ENSG00000234740.1|AL162386.2|lncRNA|chr9:13279029:13279187:-	0	-
#Deleted in new
chr9	132827306	132827435	ENSG00000165695.9|AK8|pc|chr9:132827306:132827435:-	0	-
#Deleted in new
chr9	132861395	132861597	ENSG00000165695.9|AK8|pc|chr9:132861395:132861597:-	0	-
#Partially deleted in new
chr9	132909810	132910692	ENSG00000165699.13|TSC1|pc|chr9:132909810:132910692:-	0	-
#Deleted in new
chr9	132935032	132935095	ENSG00000165699.13|TSC1|pc|chr9:132935032:132935095:-	0	-
#Deleted in new
chr9	132945532	132945598	ENSG00000165702.13|GFI1B|pc|chr9:132945532:132945598:+	0	+
#Deleted in new
chr9	132945550	132945669	ENSG00000165702.13|GFI1B|pc|chr9:132945550:132945669:+	0	+
#Deleted in new
chr9	132949689	132949804	ENSG00000165702.13|GFI1B|pc|chr9:132949689:132949804:+	0	+
#Deleted in new
chr9	132951208	132951553	ENSG00000165702.13|GFI1B|pc|chr9:132951208:132951553:+	0	+
#Deleted in new
chr9	132951208	132953763	ENSG00000165702.13|GFI1B|pc|chr9:132951208:132953763:+	0	+
#Duplicated in new
chr9	133070986	133071861	ENSG00000170835.14|CEL|pc|chr9:133070986:133071861:+	0	+
#Deleted in new
chr9	133159779	133160251	ENSG00000148288.11|GBGT1|pc|chr9:133159779:133160251:-	0	-
#Deleted in new
chr9	133207839	133207945	ENSG00000171102.14|OBP2B|pc|chr9:133207839:133207945:-	0	-
#Split in new
chr9	133250400	133256356	ENSG00000175164.13|ABO|pc|chr9:133250400:133256356:-	0	-
#Deleted in new
chr9	133255601	133255670	ENSG00000175164.13|ABO|pc|chr9:133255601:133255670:-	0	-
#Deleted in new
chr9	133259818	133259866	ENSG00000175164.13|ABO|pc|chr9:133259818:133259866:-	0	-
#Deleted in new
chr9	133275161	133275201	ENSG00000175164.13|ABO|pc|chr9:133275161:133275201:-	0	-
#Deleted in new
chr9	133275161	133275214	ENSG00000175164.13|ABO|pc|chr9:133275161:133275214:-	0	-
#Partially deleted in new
chr9	133328773	133332348	ENSG00000148296.6|SURF6|pc|chr9:133328773:133332348:-	0	-
#Split in new
chr9	133338322	133341694	ENSG00000148297.15|MED22|pc|chr9:133338322:133341694:-	0	-
#Deleted in new
chr9	133347159	133347703	ENSG00000148297.15|MED22|pc|chr9:133347159:133347703:-	0	-
#Deleted in new
chr9	133347563	133347779	ENSG00000148297.15|MED22|pc|chr9:133347563:133347779:-	0	-
#Partially deleted in new
chr9	133348217	133348573	ENSG00000148303.16|RPL7A|pc|chr9:133348217:133348573:+	0	+
#Partially deleted in new
chr9	133348251	133348817	ENSG00000148303.16|RPL7A|pc|chr9:133348251:133348817:+	0	+
#Partially deleted in new
chr9	133363794	133363892	ENSG00000148248.13|SURF4|pc|chr9:133363794:133363892:-	0	-
#Partially deleted in new
chr9	133383855	133384555	ENSG00000198870.7|STKLD1|pc|chr9:133383855:133384555:+	0	+
#Deleted in new
chr9	133384600	133384755	ENSG00000198870.7|STKLD1|pc|chr9:133384600:133384755:+	0	+
#Deleted in new
chr9	133394786	133394819	ENSG00000198870.7|STKLD1|pc|chr9:133394786:133394819:+	0	+
#Deleted in new
chr9	133449782	133449956	ENSG00000160323.18|ADAMTS13|pc|chr9:133449782:133449956:+	0	+
#Deleted in new
chr9	133449782	133449965	ENSG00000160323.18|ADAMTS13|pc|chr9:133449782:133449965:+	0	+
#Deleted in new
chr9	133532163	133532570	ENSG00000197859.9|ADAMTSL2|pc|chr9:133532163:133532570:+	0	+
#Partially deleted in new
chr9	133702915	133703701	ENSG00000123453.17|SARDH|pc|chr9:133702915:133703701:-	0	-
#Deleted in new
chr9	133725392	133725668	ENSG00000123453.17|SARDH|pc|chr9:133725392:133725668:-	0	-
#Deleted in new
chr9	134027150	134027262	ENSG00000235106.9|LINC00094|pc|chr9:134027150:134027262:+	0	+
#Partially deleted in new
chr9	134027751	134028433	ENSG00000235106.9|LINC00094|pc|chr9:134027751:134028433:+	0	+
#Partially deleted in new
chr9	134028770	134030459	ENSG00000235106.9|LINC00094|pc|chr9:134028770:134030459:+	0	+
#Deleted in new
chr9	134028825	134029254	ENSG00000235106.9|LINC00094|pc|chr9:134028825:134029254:+	0	+
#Deleted in new
chr9	134028825	134029515	ENSG00000235106.9|LINC00094|pc|chr9:134028825:134029515:+	0	+
#Deleted in new
chr9	134029038	134029115	ENSG00000235106.9|LINC00094|pc|chr9:134029038:134029115:+	0	+
#Deleted in new
chr9	134034511	134034666	ENSG00000235106.9|LINC00094|pc|chr9:134034511:134034666:+	0	+
#Deleted in new
chr9	134054289	134054492	ENSG00000235138.1|AL445931.1|lncRNA|chr9:134054289:134054492:+	0	+
#Deleted in new
chr9	134055775	134056012	ENSG00000169925.16|BRD3|pc|chr9:134055775:134056012:-	0	-
#Partially deleted in new
chr9	134056961	134058805	ENSG00000235138.1|AL445931.1|lncRNA|chr9:134056961:134058805:+	0	+
#Deleted in new
chr9	134132241	134132473	ENSG00000273249.1|BX649632.1|lncRNA|chr9:134132241:134132473:-	0	-
#Deleted in new
chr9	134168768	134169340	ENSG00000273473.1|BX649601.1|lncRNA|chr9:134168768:134169340:+	0	+
#Partially deleted in new
chr9	134293930	134294586	ENSG00000223729.1|LINC02247|lncRNA|chr9:134293930:134294586:-	0	-
#Deleted in new
chr9	134295310	134295397	ENSG00000223729.1|LINC02247|lncRNA|chr9:134295310:134295397:-	0	-
#Partially deleted in new
chr9	134319437	134319484	ENSG00000186350.9|RXRA|pc|chr9:134319437:134319484:+	0	+
#Deleted in new
chr9	134401395	134401540	ENSG00000186350.9|RXRA|pc|chr9:134401395:134401540:+	0	+
#Deleted in new
chr9	134505471	134505546	ENSG00000223795.2|AL669970.1|lncRNA|chr9:134505471:134505546:+	0	+
#Deleted in new
chr9	134521223	134521442	ENSG00000223795.2|AL669970.1|lncRNA|chr9:134521223:134521442:+	0	+
#Deleted in new
chr9	134527181	134527284	ENSG00000228877.2|AL669970.3|lncRNA|chr9:134527181:134527284:+	0	+
#Deleted in new
chr9	134553721	134553897	ENSG00000227150.1|AL669970.2|lncRNA|chr9:134553721:134553897:+	0	+
#Deleted in new
chr9	134652707	134652843	ENSG00000204011.4|COL5A1-AS1|lncRNA|chr9:134652707:134652843:-	0	-
#Deleted in new
chr9	134653184	134653479	ENSG00000130635.15|COL5A1|pc|chr9:134653184:134653479:+	0	+
#Deleted in new
chr9	134708473	134709227	ENSG00000130635.15|COL5A1|pc|chr9:134708473:134709227:+	0	+
#Partially deleted in new
chr9	13487102	13487511	ENSG00000226197.2|AL583785.1|lncRNA|chr9:13487102:13487511:+	0	+
#Deleted in new
chr9	134884739	134884772	ENSG00000160339.15|FCN2|pc|chr9:134884739:134884772:+	0	+
#Partially deleted in new
chr9	134905889	134909710	ENSG00000085265.10|FCN1|pc|chr9:134905889:134909710:-	0	-
#Deleted in new
chr9	134937150	134937190	ENSG00000236403.1|AL353611.1|lncRNA|chr9:134937150:134937190:+	0	+
#Partially deleted in new
chr9	134941467	134941608	ENSG00000236403.1|AL353611.1|lncRNA|chr9:134941467:134941608:+	0	+
#Deleted in new
chr9	135204721	135205194	ENSG00000227958.1|AL390778.1|lncRNA|chr9:135204721:135205194:-	0	-
#Deleted in new
chr9	135237543	135237597	ENSG00000227958.1|AL390778.1|lncRNA|chr9:135237543:135237597:-	0	-
#Deleted in new
chr9	135245695	135246234	ENSG00000233936.1|AL390778.2|lncRNA|chr9:135245695:135246234:-	0	-
#Deleted in new
chr9	135343248	135343471	ENSG00000178243.4|C9orf62|lncRNA|chr9:135343248:135343471:+	0	+
#Deleted in new
chr9	135462726	135464850	ENSG00000225361.3|PPP1R26-AS1|lncRNA|chr9:135462726:135464850:-	0	-
#Partially deleted in new
chr9	135468087	135468709	ENSG00000225361.3|PPP1R26-AS1|lncRNA|chr9:135468087:135468709:-	0	-
#Partially deleted in new
chr9	135468171	135468709	ENSG00000225361.3|PPP1R26-AS1|lncRNA|chr9:135468171:135468709:-	0	-
#Deleted in new
chr9	135471625	135471993	ENSG00000225361.3|PPP1R26-AS1|lncRNA|chr9:135471625:135471993:-	0	-
#Deleted in new
chr9	135472076	135472249	ENSG00000225361.3|PPP1R26-AS1|lncRNA|chr9:135472076:135472249:-	0	-
#Deleted in new
chr9	135479078	135479111	ENSG00000196422.10|PPP1R26|pc|chr9:135479078:135479111:+	0	+
#Deleted in new
chr9	135482681	135482815	ENSG00000196422.10|PPP1R26|pc|chr9:135482681:135482815:+	0	+
#Deleted in new
chr9	135482682	135482815	ENSG00000196422.10|PPP1R26|pc|chr9:135482682:135482815:+	0	+
#Deleted in new
chr9	135502068	135502266	ENSG00000122140.10|MRPS2|pc|chr9:135502068:135502266:+	0	+
#Deleted in new
chr9	135502587	135502637	ENSG00000122140.10|MRPS2|pc|chr9:135502587:135502637:+	0	+
#Partially deleted in new
chr9	135504235	135504319	ENSG00000226706.1|AL161452.1|lncRNA|chr9:135504235:135504319:-	0	-
#Deleted in new
chr9	135561755	135561897	ENSG00000122133.16|PAEP|pc|chr9:135561755:135561897:+	0	+
#Deleted in new
chr9	135561757	135561897	ENSG00000122133.16|PAEP|pc|chr9:135561757:135561897:+	0	+
#Deleted in new
chr9	135561766	135561897	ENSG00000122133.16|PAEP|pc|chr9:135561766:135561897:+	0	+
#Deleted in new
chr9	135561776	135561897	ENSG00000122133.16|PAEP|pc|chr9:135561776:135561897:+	0	+
#Deleted in new
chr9	135561845	135561897	ENSG00000122133.16|PAEP|pc|chr9:135561845:135561897:+	0	+
#Deleted in new
chr9	135562293	135562433	ENSG00000122133.16|PAEP|pc|chr9:135562293:135562433:+	0	+
#Deleted in new
chr9	135562341	135562433	ENSG00000122133.16|PAEP|pc|chr9:135562341:135562433:+	0	+
#Deleted in new
chr9	135562359	135562433	ENSG00000122133.16|PAEP|pc|chr9:135562359:135562433:+	0	+
#Deleted in new
chr9	135562361	135562433	ENSG00000122133.16|PAEP|pc|chr9:135562361:135562433:+	0	+
#Deleted in new
chr9	135562819	135562893	ENSG00000122133.16|PAEP|pc|chr9:135562819:135562893:+	0	+
#Deleted in new
chr9	135564243	135564354	ENSG00000122133.16|PAEP|pc|chr9:135564243:135564354:+	0	+
#Deleted in new
chr9	135565337	135565514	ENSG00000122133.16|PAEP|pc|chr9:135565337:135565514:+	0	+
#Deleted in new
chr9	135565409	135565514	ENSG00000122133.16|PAEP|pc|chr9:135565409:135565514:+	0	+
#Deleted in new
chr9	135565413	135565514	ENSG00000122133.16|PAEP|pc|chr9:135565413:135565514:+	0	+
#Deleted in new
chr9	135565431	135565514	ENSG00000122133.16|PAEP|pc|chr9:135565431:135565514:+	0	+
#Deleted in new
chr9	135565784	135565801	ENSG00000122133.16|PAEP|pc|chr9:135565784:135565801:+	0	+
#Deleted in new
chr9	135565784	135565830	ENSG00000122133.16|PAEP|pc|chr9:135565784:135565830:+	0	+
#Deleted in new
chr9	135566191	135566228	ENSG00000122133.16|PAEP|pc|chr9:135566191:135566228:+	0	+
#Deleted in new
chr9	135566191	135566666	ENSG00000122133.16|PAEP|pc|chr9:135566191:135566666:+	0	+
#Deleted in new
chr9	135566532	135566776	ENSG00000122133.16|PAEP|pc|chr9:135566532:135566776:+	0	+
#Deleted in new
chr9	135566533	135566783	ENSG00000122133.16|PAEP|pc|chr9:135566533:135566783:+	0	+
#Deleted in new
chr9	135566552	135566776	ENSG00000122133.16|PAEP|pc|chr9:135566552:135566776:+	0	+
#Deleted in new
chr9	135566552	135566955	ENSG00000122133.16|PAEP|pc|chr9:135566552:135566955:+	0	+
#Deleted in new
chr9	135574934	135575094	ENSG00000237339.5|LINC01502|lncRNA|chr9:135574934:135575094:+	0	+
#Deleted in new
chr9	135574950	135575094	ENSG00000237339.5|LINC01502|lncRNA|chr9:135574950:135575094:+	0	+
#Deleted in new
chr9	135577349	135577480	ENSG00000237339.5|LINC01502|lncRNA|chr9:135577349:135577480:+	0	+
#Deleted in new
chr9	135577633	135577774	ENSG00000237339.5|LINC01502|lncRNA|chr9:135577633:135577774:+	0	+
#Deleted in new
chr9	135581622	135581680	ENSG00000237339.5|LINC01502|lncRNA|chr9:135581622:135581680:+	0	+
#Deleted in new
chr9	135582935	135583009	ENSG00000237339.5|LINC01502|lncRNA|chr9:135582935:135583009:+	0	+
#Deleted in new
chr9	135583742	135583860	ENSG00000237339.5|LINC01502|lncRNA|chr9:135583742:135583860:+	0	+
#Deleted in new
chr9	135585048	135585272	ENSG00000237339.5|LINC01502|lncRNA|chr9:135585048:135585272:+	0	+
#Deleted in new
chr9	135585048	135585364	ENSG00000237339.5|LINC01502|lncRNA|chr9:135585048:135585364:+	0	+
#Deleted in new
chr9	135585048	135587112	ENSG00000237339.5|LINC01502|lncRNA|chr9:135585048:135587112:+	0	+
#Deleted in new
chr9	135604344	135604383	ENSG00000236543.2|AL354761.2|pc|chr9:135604344:135604383:+	0	+
#Deleted in new
chr9	135605214	135605464	ENSG00000236543.2|AL354761.2|pc|chr9:135605214:135605464:+	0	+
#Deleted in new
chr9	135696611	135696805	ENSG00000165643.10|SOHLH1|pc|chr9:135696611:135696805:-	0	-
#Deleted in new
chr9	135768470	135768494	ENSG00000107147.12|KCNT1|pc|chr9:135768470:135768494:+	0	+
#Deleted in new
chr9	135771113	135771175	ENSG00000107147.12|KCNT1|pc|chr9:135771113:135771175:+	0	+
#Deleted in new
chr9	135817787	135817847	ENSG00000130559.18|CAMSAP1|pc|chr9:135817787:135817847:-	0	-
#Partially deleted in new
chr9	135907811	135907875	ENSG00000238058.1|AL355574.1|lncRNA|chr9:135907811:135907875:+	0	+
#Deleted in new
chr9	135908651	135908788	ENSG00000238058.1|AL355574.1|lncRNA|chr9:135908651:135908788:+	0	+
#Deleted in new
chr9	135913403	135913513	ENSG00000238058.1|AL355574.1|lncRNA|chr9:135913403:135913513:+	0	+
#Deleted in new
chr9	135942161	135942289	ENSG00000130560.8|UBAC1|pc|chr9:135942161:135942289:-	0	-
#Partially deleted in new
chr9	136122520	136124363	ENSG00000275329.1|AL138781.2|lncRNA|chr9:136122520:136124363:+	0	+
#Partially deleted in new
chr9	136295851	136296557	ENSG00000260220.6|CCDC187|pc|chr9:136295851:136296557:-	0	-
#Deleted in new
chr9	136306811	136306901	ENSG00000260220.6|CCDC187|pc|chr9:136306811:136306901:-	0	-
#Partially deleted in new
chr9	136322302	136325218	ENSG00000262075.3|DKFZP434A062|lncRNA|chr9:136322302:136325218:-	0	-
#Partially deleted in new
chr9	136354807	136355022	ENSG00000160360.12|GPSM1|pc|chr9:136354807:136355022:+	0	+
#Deleted in new
chr9	136411117	136411405	ENSG00000165688.11|PMPCA|pc|chr9:136411117:136411405:+	0	+
#Partially deleted in new
chr9	136419043	136420933	ENSG00000165688.11|PMPCA|pc|chr9:136419043:136420933:+	0	+
#Partially deleted in new
chr9	136421831	136423760	ENSG00000165688.11|PMPCA|pc|chr9:136421831:136423760:+	0	+
#Partially deleted in new
chr9	136435512	136439823	ENSG00000148384.12|INPP5E|pc|chr9:136435512:136439823:-	0	-
#Partially deleted in new
chr9	136448249	136448842	ENSG00000148396.18|SEC16A|pc|chr9:136448249:136448842:-	0	-
#Partially deleted in new
chr9	136543129	136543835	ENSG00000227512.1|AL592301.1|lncRNA|chr9:136543129:136543835:+	0	+
#Partially deleted in new
chr9	136547841	136548101	ENSG00000237886.1|NALT1|lncRNA|chr9:136547841:136548101:+	0	+
#Deleted in new
chr9	136612023	136612170	ENSG00000279141.3|LINC01451|lncRNA|chr9:136612023:136612170:-	0	-
#Deleted in new
chr9	136612027	136612170	ENSG00000279141.3|LINC01451|lncRNA|chr9:136612027:136612170:-	0	-
#Deleted in new
chr9	136612702	136612903	ENSG00000279141.3|LINC01451|lncRNA|chr9:136612702:136612903:-	0	-
#Partially deleted in new
chr9	136614123	136617181	ENSG00000279141.3|LINC01451|lncRNA|chr9:136614123:136617181:-	0	-
#Deleted in new
chr9	136615094	136615263	ENSG00000279141.3|LINC01451|lncRNA|chr9:136615094:136615263:-	0	-
#Deleted in new
chr9	136615360	136615637	ENSG00000279141.3|LINC01451|lncRNA|chr9:136615360:136615637:-	0	-
#Deleted in new
chr9	136616311	136616782	ENSG00000279141.3|LINC01451|lncRNA|chr9:136616311:136616782:-	0	-
#Partially deleted in new
chr9	136616783	136616846	ENSG00000279141.3|LINC01451|lncRNA|chr9:136616783:136616846:-	0	-
#Deleted in new
chr9	136648609	136649065	ENSG00000228401.4|HSPC324|lncRNA|chr9:136648609:136649065:-	0	-
#Partially deleted in new
chr9	136670949	136671014	ENSG00000172889.15|EGFL7|pc|chr9:136670949:136671014:+	0	+
#Partially deleted in new
chr9	136720884	136722028	ENSG00000165716.10|FAM69B|pc|chr9:136720884:136722028:+	0	+
#Deleted in new
chr9	136723896	136724000	ENSG00000233016.6|SNHG7|lncRNA|chr9:136723896:136724000:-	0	-
#Deleted in new
chr9	136724657	136724939	ENSG00000233016.6|SNHG7|lncRNA|chr9:136724657:136724939:-	0	-
#Deleted in new
chr9	136724659	136724939	ENSG00000233016.6|SNHG7|lncRNA|chr9:136724659:136724939:-	0	-
#Deleted in new
chr9	136725054	136725110	ENSG00000233016.6|SNHG7|lncRNA|chr9:136725054:136725110:-	0	-
#Split in new
chr9	136725233	136727086	ENSG00000233016.6|SNHG7|lncRNA|chr9:136725233:136727086:-	0	-
#Partially deleted in new
chr9	136726310	136726416	ENSG00000233016.6|SNHG7|lncRNA|chr9:136726310:136726416:-	0	-
#Partially deleted in new
chr9	136726310	136726483	ENSG00000233016.6|SNHG7|lncRNA|chr9:136726310:136726483:-	0	-
#Deleted in new
chr9	136727045	136727086	ENSG00000233016.6|SNHG7|lncRNA|chr9:136727045:136727086:-	0	-
#Deleted in new
chr9	136727880	136728184	ENSG00000233016.6|SNHG7|lncRNA|chr9:136727880:136728184:-	0	-
#Partially deleted in new
chr9	136738166	136739553	ENSG00000187922.13|LCN10|pc|chr9:136738166:136739553:-	0	-
#Partially deleted in new
chr9	136738166	136739553	ENSG00000204003.8|AL355987.1|pc|chr9:136738166:136739553:-	0	-
#Partially deleted in new
chr9	136741655	136741737	ENSG00000187922.13|LCN10|pc|chr9:136741655:136741737:-	0	-
#Deleted in new
chr9	136758450	136758543	ENSG00000204001.9|LCN8|pc|chr9:136758450:136758543:-	0	-
#Deleted in new
chr9	136761786	136761853	ENSG00000177984.6|LCN15|pc|chr9:136761786:136761853:-	0	-
#Deleted in new
chr9	136821328	136822056	ENSG00000196642.18|RABL6|pc|chr9:136821328:136822056:+	0	+
#Deleted in new
chr9	136822040	136822056	ENSG00000196642.18|RABL6|pc|chr9:136822040:136822056:+	0	+
#Partially deleted in new
chr9	136826596	136828546	ENSG00000196642.18|RABL6|pc|chr9:136826596:136828546:+	0	+
#Partially deleted in new
chr9	136832261	136834340	ENSG00000196642.18|RABL6|pc|chr9:136832261:136834340:+	0	+
#Deleted in new
chr9	136833719	136834340	ENSG00000196642.18|RABL6|pc|chr9:136833719:136834340:+	0	+
#Partially deleted in new
chr9	136835170	136837662	ENSG00000196642.18|RABL6|pc|chr9:136835170:136837662:+	0	+
#Partially deleted in new
chr9	136835741	136836998	ENSG00000196642.18|RABL6|pc|chr9:136835741:136836998:+	0	+
#Partially deleted in new
chr9	136886064	136886279	ENSG00000127191.17|TRAF2|pc|chr9:136886064:136886279:+	0	+
#Deleted in new
chr9	136889534	136889562	ENSG00000127191.17|TRAF2|pc|chr9:136889534:136889562:+	0	+
#Deleted in new
chr9	136889669	136889736	ENSG00000127191.17|TRAF2|pc|chr9:136889669:136889736:+	0	+
#Deleted in new
chr9	136890348	136890542	ENSG00000127191.17|TRAF2|pc|chr9:136890348:136890542:+	0	+
#Partially deleted in new
chr9	136901943	136902396	ENSG00000127191.17|TRAF2|pc|chr9:136901943:136902396:+	0	+
#Deleted in new
chr9	136937168	136937988	ENSG00000260190.1|AL807752.5|lncRNA|chr9:136937168:136937988:-	0	-
#Partially deleted in new
chr9	136946767	136946967	ENSG00000176919.11|C8G|pc|chr9:136946767:136946967:+	0	+
#Partially deleted in new
chr9	136946767	136946974	ENSG00000176919.11|C8G|pc|chr9:136946767:136946974:+	0	+
#Deleted in new
chr9	136949550	136949668	ENSG00000184925.11|LCN12|pc|chr9:136949550:136949668:+	0	+
#Deleted in new
chr9	136951274	136951396	ENSG00000184925.11|LCN12|pc|chr9:136951274:136951396:+	0	+
#Deleted in new
chr9	136953452	136953491	ENSG00000184925.11|LCN12|pc|chr9:136953452:136953491:+	0	+
#Deleted in new
chr9	136969242	136969473	ENSG00000198454.2|PRR31|lncRNA|chr9:136969242:136969473:+	0	+
#Deleted in new
chr9	136975091	136975254	ENSG00000107317.12|PTGDS|pc|chr9:136975091:136975254:+	0	+
#Deleted in new
chr9	136975093	136975254	ENSG00000107317.12|PTGDS|pc|chr9:136975093:136975254:+	0	+
#Deleted in new
chr9	136975394	136975476	ENSG00000107317.12|PTGDS|pc|chr9:136975394:136975476:+	0	+
#Deleted in new
chr9	136975394	136975486	ENSG00000107317.12|PTGDS|pc|chr9:136975394:136975486:+	0	+
#Deleted in new
chr9	136976548	136976732	ENSG00000107317.12|PTGDS|pc|chr9:136976548:136976732:+	0	+
#Partially deleted in new
chr9	136976548	136976981	ENSG00000107317.12|PTGDS|pc|chr9:136976548:136976981:+	0	+
#Partially deleted in new
chr9	136980832	136981056	ENSG00000107317.12|PTGDS|pc|chr9:136980832:136981056:+	0	+
#Partially deleted in new
chr9	136984712	136985758	ENSG00000214402.6|LCNL1|pc|chr9:136984712:136985758:+	0	+
#Partially deleted in new
chr9	136984712	136985761	ENSG00000214402.6|LCNL1|pc|chr9:136984712:136985761:+	0	+
#Deleted in new
chr9	136985035	136985137	ENSG00000214402.6|LCNL1|pc|chr9:136985035:136985137:+	0	+
#Deleted in new
chr9	136985035	136985137	ENSG00000284341.1|AL807752.7|pc|chr9:136985035:136985137:+	0	+
#Deleted in new
chr9	136985035	136985811	ENSG00000214402.6|LCNL1|pc|chr9:136985035:136985811:+	0	+
#Deleted in new
chr9	136985396	136985435	ENSG00000284341.1|AL807752.7|pc|chr9:136985396:136985435:+	0	+
#Deleted in new
chr9	136985396	136985758	ENSG00000214402.6|LCNL1|pc|chr9:136985396:136985758:+	0	+
#Deleted in new
chr9	136986117	136986410	ENSG00000214402.6|LCNL1|pc|chr9:136986117:136986410:+	0	+
#Deleted in new
chr9	137023058	137023060	ENSG00000107331.16|ABCA2|pc|chr9:137023058:137023060:-	0	-
#Deleted in new
chr9	137028716	137028807	ENSG00000107331.16|ABCA2|pc|chr9:137028716:137028807:-	0	-
#Partially deleted in new
chr9	137028716	137028873	ENSG00000107331.16|ABCA2|pc|chr9:137028716:137028873:-	0	-
#Partially deleted in new
chr9	137028716	137028877	ENSG00000107331.16|ABCA2|pc|chr9:137028716:137028877:-	0	-
#Partially deleted in new
chr9	137028716	137028878	ENSG00000107331.16|ABCA2|pc|chr9:137028716:137028878:-	0	-
#Deleted in new
chr9	137037039	137037394	ENSG00000180539.7|C9orf139|lncRNA|chr9:137037039:137037394:+	0	+
#Deleted in new
chr9	137037613	137037955	ENSG00000180539.7|C9orf139|lncRNA|chr9:137037613:137037955:+	0	+
#Deleted in new
chr9	137057662	137057829	ENSG00000229257.2|AL807752.2|lncRNA|chr9:137057662:137057829:+	0	+
#Partially deleted in new
chr9	137062123	137064787	ENSG00000186193.8|SAPCD2|pc|chr9:137062123:137064787:-	0	-
#Deleted in new
chr9	137062327	137062461	ENSG00000229257.2|AL807752.2|lncRNA|chr9:137062327:137062461:+	0	+
#Deleted in new
chr9	137063534	137064141	ENSG00000231864.2|AL807752.3|lncRNA|chr9:137063534:137064141:+	0	+
#Partially deleted in new
chr9	137084945	137086817	ENSG00000268996.3|MAN1B1-AS1|lncRNA|chr9:137084945:137086817:-	0	-
#Partially deleted in new
chr9	137102512	137106315	ENSG00000177239.14|MAN1B1|pc|chr9:137102512:137106315:+	0	+
#Deleted in new
chr9	137103347	137104329	ENSG00000177239.14|MAN1B1|pc|chr9:137103347:137104329:+	0	+
#Partially deleted in new
chr9	137103649	137106315	ENSG00000177239.14|MAN1B1|pc|chr9:137103649:137106315:+	0	+
#Partially deleted in new
chr9	137104425	137106809	ENSG00000177239.14|MAN1B1|pc|chr9:137104425:137106809:+	0	+
#Partially deleted in new
chr9	137104602	137106315	ENSG00000177239.14|MAN1B1|pc|chr9:137104602:137106315:+	0	+
#Deleted in new
chr9	137114974	137115177	ENSG00000176978.13|DPP7|pc|chr9:137114974:137115177:-	0	-
#Partially deleted in new
chr9	137272781	137273546	ENSG00000188986.6|NELFB|pc|chr9:137272781:137273546:+	0	+
#Partially deleted in new
chr9	137293867	137295721	ENSG00000260996.1|BX255925.1|lncRNA|chr9:137293867:137295721:-	0	-
#Deleted in new
chr9	137309606	137309700	ENSG00000187609.15|EXD3|pc|chr9:137309606:137309700:-	0	-
#Deleted in new
chr9	137343158	137343497	ENSG00000187609.15|EXD3|pc|chr9:137343158:137343497:-	0	-
#Deleted in new
chr9	137354338	137354377	ENSG00000187609.15|EXD3|pc|chr9:137354338:137354377:-	0	-
#Deleted in new
chr9	137374611	137374763	ENSG00000187609.15|EXD3|pc|chr9:137374611:137374763:-	0	-
#Deleted in new
chr9	137377073	137377281	ENSG00000187609.15|EXD3|pc|chr9:137377073:137377281:-	0	-
#Deleted in new
chr9	137381192	137381246	ENSG00000187609.15|EXD3|pc|chr9:137381192:137381246:-	0	-
#Deleted in new
chr9	137383312	137383377	ENSG00000187609.15|EXD3|pc|chr9:137383312:137383377:-	0	-
#Partially deleted in new
chr9	137391801	137393235	ENSG00000187609.15|EXD3|pc|chr9:137391801:137393235:-	0	-
#Deleted in new
chr9	137395302	137395404	ENSG00000187609.15|EXD3|pc|chr9:137395302:137395404:-	0	-
#Deleted in new
chr9	137395302	137395408	ENSG00000187609.15|EXD3|pc|chr9:137395302:137395408:-	0	-
#Deleted in new
chr9	137431074	137431100	ENSG00000188747.8|NOXA1|pc|chr9:137431074:137431100:+	0	+
#Deleted in new
chr9	137441285	137441449	ENSG00000188833.9|ENTPD8|pc|chr9:137441285:137441449:-	0	-
#Deleted in new
chr9	137441285	137441816	ENSG00000188833.9|ENTPD8|pc|chr9:137441285:137441816:-	0	-
#Partially deleted in new
chr9	137551198	137551978	ENSG00000182154.7|MRPL41|pc|chr9:137551198:137551978:+	0	+
#Deleted in new
chr9	137556602	137556815	ENSG00000148399.12|DPH7|pc|chr9:137556602:137556815:-	0	-
#Partially deleted in new
chr9	137574751	137575216	ENSG00000148399.12|DPH7|pc|chr9:137574751:137575216:-	0	-
#Deleted in new
chr9	137576308	137576402	ENSG00000148399.12|DPH7|pc|chr9:137576308:137576402:-	0	-
#Deleted in new
chr9	137578509	137578540	ENSG00000148399.12|DPH7|pc|chr9:137578509:137578540:-	0	-
#Deleted in new
chr9	137578509	137578549	ENSG00000148399.12|DPH7|pc|chr9:137578509:137578549:-	0	-
#Partially deleted in new
chr9	137615331	137616199	ENSG00000203993.4|ARRDC1-AS1|lncRNA|chr9:137615331:137616199:-	0	-
#Partially deleted in new
chr9	137615366	137616132	ENSG00000203993.4|ARRDC1-AS1|lncRNA|chr9:137615366:137616132:-	0	-
#Deleted in new
chr9	137615748	137616199	ENSG00000203993.4|ARRDC1-AS1|lncRNA|chr9:137615748:137616199:-	0	-
#Deleted in new
chr9	137617387	137618831	ENSG00000203993.4|ARRDC1-AS1|lncRNA|chr9:137617387:137618831:-	0	-
#Deleted in new
chr9	137617933	137618191	ENSG00000203993.4|ARRDC1-AS1|lncRNA|chr9:137617933:137618191:-	0	-
#Partially deleted in new
chr9	137617933	137618906	ENSG00000203993.4|ARRDC1-AS1|lncRNA|chr9:137617933:137618906:-	0	-
#Deleted in new
chr9	137618530	137618813	ENSG00000203993.4|ARRDC1-AS1|lncRNA|chr9:137618530:137618813:-	0	-
#Deleted in new
chr9	137637501	137637624	ENSG00000181090.20|EHMT1|pc|chr9:137637501:137637624:+	0	+
#Deleted in new
chr9	137646335	137646395	ENSG00000181090.20|EHMT1|pc|chr9:137646335:137646395:+	0	+
#Deleted in new
chr9	137646376	137646438	ENSG00000181090.20|EHMT1|pc|chr9:137646376:137646438:+	0	+
#Deleted in new
chr9	137650859	137651037	ENSG00000181090.20|EHMT1|pc|chr9:137650859:137651037:+	0	+
#Deleted in new
chr9	137667349	137667494	ENSG00000181090.20|EHMT1|pc|chr9:137667349:137667494:+	0	+
#Deleted in new
chr9	137674896	137674969	ENSG00000181090.20|EHMT1|pc|chr9:137674896:137674969:+	0	+
#Deleted in new
chr9	137675185	137675211	ENSG00000181090.20|EHMT1|pc|chr9:137675185:137675211:+	0	+
#Deleted in new
chr9	137676102	137676508	ENSG00000181090.20|EHMT1|pc|chr9:137676102:137676508:+	0	+
#Deleted in new
chr9	137680897	137680922	ENSG00000181090.20|EHMT1|pc|chr9:137680897:137680922:+	0	+
#Deleted in new
chr9	137685287	137685335	ENSG00000181090.20|EHMT1|pc|chr9:137685287:137685335:+	0	+
#Deleted in new
chr9	137738606	137738779	ENSG00000181090.20|EHMT1|pc|chr9:137738606:137738779:+	0	+
#Deleted in new
chr9	137742956	137743100	ENSG00000181090.20|EHMT1|pc|chr9:137742956:137743100:+	0	+
#Deleted in new
chr9	137742965	137743100	ENSG00000181090.20|EHMT1|pc|chr9:137742965:137743100:+	0	+
#Deleted in new
chr9	137745472	137745602	ENSG00000181090.20|EHMT1|pc|chr9:137745472:137745602:+	0	+
#Partially deleted in new
chr9	137745472	137747964	ENSG00000181090.20|EHMT1|pc|chr9:137745472:137747964:+	0	+
#Partially deleted in new
chr9	137764126	137764701	ENSG00000181090.20|EHMT1|pc|chr9:137764126:137764701:+	0	+
#Deleted in new
chr9	137784105	137784393	ENSG00000181090.20|EHMT1|pc|chr9:137784105:137784393:+	0	+
#Deleted in new
chr9	137788763	137788828	ENSG00000181090.20|EHMT1|pc|chr9:137788763:137788828:+	0	+
#Deleted in new
chr9	137788810	137788828	ENSG00000181090.20|EHMT1|pc|chr9:137788810:137788828:+	0	+
#Deleted in new
chr9	137792054	137792256	ENSG00000181090.20|EHMT1|pc|chr9:137792054:137792256:+	0	+
#Deleted in new
chr9	137795079	137795092	ENSG00000181090.20|EHMT1|pc|chr9:137795079:137795092:+	0	+
#Deleted in new
chr9	137795117	137795188	ENSG00000181090.20|EHMT1|pc|chr9:137795117:137795188:+	0	+
#Deleted in new
chr9	137800378	137800413	ENSG00000181090.20|EHMT1|pc|chr9:137800378:137800413:+	0	+
#Deleted in new
chr9	137800442	137800575	ENSG00000181090.20|EHMT1|pc|chr9:137800442:137800575:+	0	+
#Partially deleted in new
chr9	137802408	137803195	ENSG00000181090.20|EHMT1|pc|chr9:137802408:137803195:+	0	+
#Deleted in new
chr9	137802856	137803010	ENSG00000181090.20|EHMT1|pc|chr9:137802856:137803010:+	0	+
#Partially deleted in new
chr9	137802856	137803199	ENSG00000181090.20|EHMT1|pc|chr9:137802856:137803199:+	0	+
#Deleted in new
chr9	137803243	137803352	ENSG00000181090.20|EHMT1|pc|chr9:137803243:137803352:+	0	+
#Deleted in new
chr9	137815322	137815373	ENSG00000181090.20|EHMT1|pc|chr9:137815322:137815373:+	0	+
#Deleted in new
chr9	137815577	137815642	ENSG00000181090.20|EHMT1|pc|chr9:137815577:137815642:+	0	+
#Partially deleted in new
chr9	137816340	137817525	ENSG00000181090.20|EHMT1|pc|chr9:137816340:137817525:+	0	+
#Deleted in new
chr9	137816356	137816383	ENSG00000181090.20|EHMT1|pc|chr9:137816356:137816383:+	0	+
#Deleted in new
chr9	137816460	137816497	ENSG00000181090.20|EHMT1|pc|chr9:137816460:137816497:+	0	+
#Deleted in new
chr9	137820040	137820114	ENSG00000181090.20|EHMT1|pc|chr9:137820040:137820114:+	0	+
#Deleted in new
chr9	137832631	137832943	ENSG00000181090.20|EHMT1|pc|chr9:137832631:137832943:+	0	+
#Deleted in new
chr9	137832852	137832943	ENSG00000181090.20|EHMT1|pc|chr9:137832852:137832943:+	0	+
#Deleted in new
chr9	137846559	137846666	ENSG00000181090.20|EHMT1|pc|chr9:137846559:137846666:+	0	+
#Partially deleted in new
chr9	137864678	137870016	ENSG00000181090.20|EHMT1|pc|chr9:137864678:137870016:+	0	+
#Deleted in new
chr9	137867924	137868237	ENSG00000203987.2|AL772363.1|lncRNA|chr9:137867924:137868237:-	0	-
#Deleted in new
chr9	137867926	137868237	ENSG00000203987.2|AL772363.1|lncRNA|chr9:137867926:137868237:-	0	-
#Partially deleted in new
chr9	137890045	137892570	ENSG00000203987.2|AL772363.1|lncRNA|chr9:137890045:137892570:-	0	-
#Deleted in new
chr9	138199932	138200282	ENSG00000237419.1|AL954642.1|lncRNA|chr9:138199932:138200282:-	0	-
#Deleted in new
chr9	138203137	138203325	ENSG00000237419.1|AL954642.1|lncRNA|chr9:138203137:138203325:-	0	-
#Deleted in new
chr9	13927970	13928061	ENSG00000205636.3|LINC00583|lncRNA|chr9:13927970:13928061:+	0	+
#Deleted in new
chr9	13944374	13944451	ENSG00000205636.3|LINC00583|lncRNA|chr9:13944374:13944451:+	0	+
#Deleted in new
chr9	13945391	13945610	ENSG00000205636.3|LINC00583|lncRNA|chr9:13945391:13945610:+	0	+
#Deleted in new
chr9	14588796	14590065	ENSG00000272871.1|AL159169.2|lncRNA|chr9:14588796:14590065:-	0	-
#Deleted in new
chr9	14683570	14683729	ENSG00000175893.11|ZDHHC21|pc|chr9:14683570:14683729:-	0	-
#Partially deleted in new
chr9	14751704	14751852	ENSG00000164946.19|FREM1|pc|chr9:14751704:14751852:-	0	-
#Deleted in new
chr9	147900	148040	ENSG00000172785.18|CBWD1|pc|chr9:147900:148040:-	0	-
#Deleted in new
chr9	147949	148044	ENSG00000172785.18|CBWD1|pc|chr9:147949:148044:-	0	-
#Partially deleted in new
chr9	150641	150725	ENSG00000172785.18|CBWD1|pc|chr9:150641:150725:-	0	-
#Deleted in new
chr9	15232231	15232444	ENSG00000155158.20|TTC39B|pc|chr9:15232231:15232444:-	0	-
#Deleted in new
chr9	15489269	15489440	ENSG00000164985.14|PSIP1|pc|chr9:15489269:15489440:-	0	-
#Deleted in new
chr9	15491951	15492225	ENSG00000164985.14|PSIP1|pc|chr9:15491951:15492225:-	0	-
#Deleted in new
chr9	15850225	15850311	ENSG00000164989.16|CCDC171|pc|chr9:15850225:15850311:+	0	+
#Deleted in new
chr9	15883073	15883191	ENSG00000164989.16|CCDC171|pc|chr9:15883073:15883191:+	0	+
#Deleted in new
chr9	15887794	15888088	ENSG00000164989.16|CCDC171|pc|chr9:15887794:15888088:+	0	+
#Deleted in new
chr9	15888982	15889101	ENSG00000164989.16|CCDC171|pc|chr9:15888982:15889101:+	0	+
#Duplicated in new
chr9	15908	16061	ENSG00000181404.15|WASHC1|pc|chr9:15908:16061:-	0	-
#Deleted in new
chr9	16020588	16020794	ENSG00000164989.16|CCDC171|pc|chr9:16020588:16020794:+	0	+
#Deleted in new
chr9	165982	166599	ENSG00000172785.18|CBWD1|pc|chr9:165982:166599:-	0	-
#Deleted in new
chr9	165982	167605	ENSG00000172785.18|CBWD1|pc|chr9:165982:167605:-	0	-
#Deleted in new
chr9	17048918	17049041	ENSG00000237153.2|AL162725.2|lncRNA|chr9:17048918:17049041:+	0	+
#Deleted in new
chr9	17112272	17112815	ENSG00000237153.2|AL162725.2|lncRNA|chr9:17112272:17112815:+	0	+
#Partially deleted in new
chr9	171595	172172	ENSG00000172785.18|CBWD1|pc|chr9:171595:172172:-	0	-
#Deleted in new
chr9	17166817	17168556	ENSG00000044459.14|CNTLN|pc|chr9:17166817:17168556:+	0	+
#Partially deleted in new
chr9	17298189	17302051	ENSG00000044459.14|CNTLN|pc|chr9:17298189:17302051:+	0	+
#Deleted in new
chr9	17444196	17444246	ENSG00000044459.14|CNTLN|pc|chr9:17444196:17444246:+	0	+
#Deleted in new
chr9	19065031	19065084	ENSG00000147874.10|HAUS6|pc|chr9:19065031:19065084:-	0	-
#Deleted in new
chr9	19127418	19127475	ENSG00000147872.9|PLIN2|pc|chr9:19127418:19127475:-	0	-
#Deleted in new
chr9	19127418	19127476	ENSG00000147872.9|PLIN2|pc|chr9:19127418:19127476:-	0	-
#Deleted in new
chr9	19127418	19127490	ENSG00000147872.9|PLIN2|pc|chr9:19127418:19127490:-	0	-
#Deleted in new
chr9	19127418	19127576	ENSG00000147872.9|PLIN2|pc|chr9:19127418:19127576:-	0	-
#Partially deleted in new
chr9	19129736	19131271	ENSG00000147872.9|PLIN2|pc|chr9:19129736:19131271:-	0	-
#Deleted in new
chr9	19131214	19131271	ENSG00000147872.9|PLIN2|pc|chr9:19131214:19131271:-	0	-
#Deleted in new
chr9	19291336	19291443	ENSG00000232978.2|AL161909.2|lncRNA|chr9:19291336:19291443:-	0	-
#Deleted in new
chr9	19292274	19292576	ENSG00000232978.2|AL161909.2|lncRNA|chr9:19292274:19292576:-	0	-
#Deleted in new
chr9	19375450	19375996	ENSG00000273226.1|AL391834.2|lncRNA|chr9:19375450:19375996:+	0	+
#Deleted in new
chr9	20410560	20410670	ENSG00000171843.15|MLLT3|pc|chr9:20410560:20410670:-	0	-
#Deleted in new
chr9	20658308	20658459	ENSG00000188352.12|FOCAD|pc|chr9:20658308:20658459:+	0	+
#Deleted in new
chr9	20658690	20658826	ENSG00000188352.12|FOCAD|pc|chr9:20658690:20658826:+	0	+
#Deleted in new
chr9	2068952	2069059	ENSG00000080503.22|SMARCA2|pc|chr9:2068952:2069059:+	0	+
#Deleted in new
chr9	2085974	2086107	ENSG00000080503.22|SMARCA2|pc|chr9:2085974:2086107:+	0	+
#Deleted in new
chr9	20896970	20897048	ENSG00000188352.12|FOCAD|pc|chr9:20896970:20897048:+	0	+
#Deleted in new
chr9	20957501	20957617	ENSG00000188352.12|FOCAD|pc|chr9:20957501:20957617:+	0	+
#Partially deleted in new
chr9	20999514	21007119	ENSG00000188921.13|HACD4|pc|chr9:20999514:21007119:-	0	-
#Deleted in new
chr9	21394887	21396346	ENSG00000261696.1|AL353732.1|lncRNA|chr9:21394887:21396346:-	0	-
#Deleted in new
chr9	21476898	21477035	ENSG00000171889.3|MIR31HG|lncRNA|chr9:21476898:21477035:-	0	-
#Deleted in new
chr9	21477168	21477292	ENSG00000171889.3|MIR31HG|lncRNA|chr9:21477168:21477292:-	0	-
#Deleted in new
chr9	21808806	21809000	ENSG00000099810.18|MTAP|pc|chr9:21808806:21809000:+	0	+
#Deleted in new
chr9	21856117	21856223	ENSG00000099810.18|MTAP|pc|chr9:21856117:21856223:+	0	+
#Split in new
chr9	21861975	21867078	ENSG00000099810.18|MTAP|pc|chr9:21861975:21867078:+	0	+
#Deleted in new
chr9	21892187	21893857	ENSG00000279670.1|AL359922.3|lncRNA|chr9:21892187:21893857:+	0	+
#Deleted in new
chr9	21930389	21932739	ENSG00000099810.18|MTAP|pc|chr9:21930389:21932739:+	0	+
#Deleted in new
chr9	21931007	21931199	ENSG00000099810.18|MTAP|pc|chr9:21931007:21931199:+	0	+
#Deleted in new
chr9	21931007	21937651	ENSG00000099810.18|MTAP|pc|chr9:21931007:21937651:+	0	+
#Deleted in new
chr9	21966928	21967751	ENSG00000224854.3|CDKN2A-AS1|lncRNA|chr9:21966928:21967751:+	0	+
#Deleted in new
chr9	21967752	21968242	ENSG00000147889.17|CDKN2A|pc|chr9:21967752:21968242:-	0	-
#Deleted in new
chr9	21967990	21968242	ENSG00000147889.17|CDKN2A|pc|chr9:21967990:21968242:-	0	-
#Deleted in new
chr9	21967995	21968242	ENSG00000147889.17|CDKN2A|pc|chr9:21967995:21968242:-	0	-
#Deleted in new
chr9	21968000	21968242	ENSG00000147889.17|CDKN2A|pc|chr9:21968000:21968242:-	0	-
#Deleted in new
chr9	21968055	21968242	ENSG00000147889.17|CDKN2A|pc|chr9:21968055:21968242:-	0	-
#Deleted in new
chr9	21968104	21968242	ENSG00000147889.17|CDKN2A|pc|chr9:21968104:21968242:-	0	-
#Deleted in new
chr9	21968179	21968242	ENSG00000147889.17|CDKN2A|pc|chr9:21968179:21968242:-	0	-
#Deleted in new
chr9	21968181	21968242	ENSG00000147889.17|CDKN2A|pc|chr9:21968181:21968242:-	0	-
#Deleted in new
chr9	21968574	21968771	ENSG00000147889.17|CDKN2A|pc|chr9:21968574:21968771:-	0	-
#Deleted in new
chr9	21969568	21969793	ENSG00000147889.17|CDKN2A|pc|chr9:21969568:21969793:-	0	-
#Deleted in new
chr9	21969582	21969793	ENSG00000147889.17|CDKN2A|pc|chr9:21969582:21969793:-	0	-
#Deleted in new
chr9	21970236	21970467	ENSG00000147889.17|CDKN2A|pc|chr9:21970236:21970467:-	0	-
#Deleted in new
chr9	21970441	21970503	ENSG00000147889.17|CDKN2A|pc|chr9:21970441:21970503:-	0	-
#Deleted in new
chr9	22029432	22029594	ENSG00000240498.6|CDKN2B-AS1|lncRNA|chr9:22029432:22029594:+	0	+
#Deleted in new
chr9	22029432	22029594	ENSG00000264545.1|AL359922.1|pc|chr9:22029432:22029594:+	0	+
#Deleted in new
chr9	22046316	22046449	ENSG00000240498.6|CDKN2B-AS1|lncRNA|chr9:22046316:22046449:+	0	+
#Deleted in new
chr9	22046750	22046900	ENSG00000240498.6|CDKN2B-AS1|lncRNA|chr9:22046750:22046900:+	0	+
#Partially deleted in new
chr9	22056251	22056387	ENSG00000240498.6|CDKN2B-AS1|lncRNA|chr9:22056251:22056387:+	0	+
#Deleted in new
chr9	22061952	22062026	ENSG00000240498.6|CDKN2B-AS1|lncRNA|chr9:22061952:22062026:+	0	+
#Partially deleted in new
chr9	22063943	22064018	ENSG00000240498.6|CDKN2B-AS1|lncRNA|chr9:22063943:22064018:+	0	+
#Deleted in new
chr9	22066234	22066353	ENSG00000240498.6|CDKN2B-AS1|lncRNA|chr9:22066234:22066353:+	0	+
#Deleted in new
chr9	220747	220863	ENSG00000107099.15|DOCK8|pc|chr9:220747:220863:+	0	+
#Deleted in new
chr9	22092307	22092469	ENSG00000240498.6|CDKN2B-AS1|lncRNA|chr9:22092307:22092469:+	0	+
#Deleted in new
chr9	22096371	22096514	ENSG00000240498.6|CDKN2B-AS1|lncRNA|chr9:22096371:22096514:+	0	+
#Deleted in new
chr9	22112319	22112395	ENSG00000240498.6|CDKN2B-AS1|lncRNA|chr9:22112319:22112395:+	0	+
#Deleted in new
chr9	22213277	22213349	ENSG00000236921.1|AL157937.1|lncRNA|chr9:22213277:22213349:-	0	-
#Deleted in new
chr9	22213676	22213769	ENSG00000236921.1|AL157937.1|lncRNA|chr9:22213676:22213769:-	0	-
#Deleted in new
chr9	22687546	22687627	ENSG00000234840.1|LINC01239|lncRNA|chr9:22687546:22687627:+	0	+
#Partially deleted in new
chr9	22703515	22703741	ENSG00000284418.1|AL391117.1|lncRNA|chr9:22703515:22703741:-	0	-
#Deleted in new
chr9	22723308	22723430	ENSG00000234840.1|LINC01239|lncRNA|chr9:22723308:22723430:+	0	+
#Partially deleted in new
chr9	22752753	22752816	ENSG00000284418.1|AL391117.1|lncRNA|chr9:22752753:22752816:-	0	-
#Deleted in new
chr9	22765161	22765276	ENSG00000284418.1|AL391117.1|lncRNA|chr9:22765161:22765276:-	0	-
#Deleted in new
chr9	22820737	22821598	ENSG00000234840.1|LINC01239|lncRNA|chr9:22820737:22821598:+	0	+
#Deleted in new
chr9	22822017	22822085	ENSG00000284418.1|AL391117.1|lncRNA|chr9:22822017:22822085:-	0	-
#Deleted in new
chr9	22823251	22824213	ENSG00000234840.1|LINC01239|lncRNA|chr9:22823251:22824213:+	0	+
#Deleted in new
chr9	22874197	22874319	ENSG00000284418.1|AL391117.1|lncRNA|chr9:22874197:22874319:-	0	-
#Deleted in new
chr9	23264226	23264337	ENSG00000284418.1|AL391117.1|lncRNA|chr9:23264226:23264337:-	0	-
#Deleted in new
chr9	23522014	23522082	ENSG00000283982.1|AL445623.2|lncRNA|chr9:23522014:23522082:-	0	-
#Deleted in new
chr9	23523426	23523481	ENSG00000283982.1|AL445623.2|lncRNA|chr9:23523426:23523481:-	0	-
#Deleted in new
chr9	23602684	23602784	ENSG00000283982.1|AL445623.2|lncRNA|chr9:23602684:23602784:-	0	-
#Deleted in new
chr9	23604781	23605101	ENSG00000283982.1|AL445623.2|lncRNA|chr9:23604781:23605101:-	0	-
#Partially deleted in new
chr9	23735236	23735565	ENSG00000107105.14|ELAVL2|pc|chr9:23735236:23735565:-	0	-
#Deleted in new
chr9	23894989	23895606	ENSG00000237414.2|AL365204.2|lncRNA|chr9:23894989:23895606:-	0	-
#Deleted in new
chr9	23897984	23898054	ENSG00000237414.2|AL365204.2|lncRNA|chr9:23897984:23898054:-	0	-
#Deleted in new
chr9	24551962	24552129	ENSG00000269957.5|AL353811.1|lncRNA|chr9:24551962:24552129:+	0	+
#Partially deleted in new
chr9	24590270	24590451	ENSG00000269957.5|AL353811.1|lncRNA|chr9:24590270:24590451:+	0	+
#Deleted in new
chr9	2506358	2506540	ENSG00000236404.8|VLDLR-AS1|lncRNA|chr9:2506358:2506540:-	0	-
#Deleted in new
chr9	2506418	2506540	ENSG00000236404.8|VLDLR-AS1|lncRNA|chr9:2506418:2506540:-	0	-
#Partially deleted in new
chr9	2521902	2522019	ENSG00000236404.8|VLDLR-AS1|lncRNA|chr9:2521902:2522019:-	0	-
#Deleted in new
chr9	2541096	2541214	ENSG00000231052.1|AL353614.1|lncRNA|chr9:2541096:2541214:+	0	+
#Deleted in new
chr9	25798033	25798206	ENSG00000236306.2|LINC01241|lncRNA|chr9:25798033:25798206:+	0	+
#Deleted in new
chr9	25798744	25798943	ENSG00000236306.2|LINC01241|lncRNA|chr9:25798744:25798943:+	0	+
#Deleted in new
chr9	25804186	25804259	ENSG00000236306.2|LINC01241|lncRNA|chr9:25804186:25804259:+	0	+
#Deleted in new
chr9	26092360	26092447	ENSG00000276759.2|AL353753.1|lncRNA|chr9:26092360:26092447:+	0	+
#Deleted in new
chr9	26094492	26094627	ENSG00000276759.2|AL353753.1|lncRNA|chr9:26094492:26094627:+	0	+
#Deleted in new
chr9	26109952	26110139	ENSG00000276759.2|AL353753.1|lncRNA|chr9:26109952:26110139:+	0	+
#Deleted in new
chr9	26116128	26116246	ENSG00000276759.2|AL353753.1|lncRNA|chr9:26116128:26116246:+	0	+
#Partially deleted in new
chr9	26746952	26747044	ENSG00000254261.1|AL451137.1|lncRNA|chr9:26746952:26747044:+	0	+
#Deleted in new
chr9	26748215	26748312	ENSG00000254261.1|AL451137.1|lncRNA|chr9:26748215:26748312:+	0	+
#Deleted in new
chr9	26786785	26786874	ENSG00000254261.1|AL451137.1|lncRNA|chr9:26786785:26786874:+	0	+
#Deleted in new
chr9	26805819	26805862	ENSG00000253400.1|AL356133.2|lncRNA|chr9:26805819:26805862:+	0	+
#Deleted in new
chr9	26869925	26869977	ENSG00000120159.11|CAAP1|pc|chr9:26869925:26869977:-	0	-
#Deleted in new
chr9	26955779	26956015	ENSG00000234676.1|IFT74-AS1|lncRNA|chr9:26955779:26956015:-	0	-
#Partially deleted in new
chr9	26956126	26956295	ENSG00000234676.1|IFT74-AS1|lncRNA|chr9:26956126:26956295:-	0	-
#Deleted in new
chr9	26976566	26976782	ENSG00000096872.15|IFT74|pc|chr9:26976566:26976782:+	0	+
#Deleted in new
chr9	27036449	27036800	ENSG00000096872.15|IFT74|pc|chr9:27036449:27036800:+	0	+
#Deleted in new
chr9	27102629	27103076	ENSG00000254396.1|AL355432.1|lncRNA|chr9:27102629:27103076:+	0	+
#Deleted in new
chr9	27391733	27391758	ENSG00000237734.1|AL163192.1|lncRNA|chr9:27391733:27391758:+	0	+
#Deleted in new
chr9	27421091	27421714	ENSG00000120162.9|MOB3B|pc|chr9:27421091:27421714:-	0	-
#Partially deleted in new
chr9	27656	30445	ENSG00000227518.5|AL928970.1|lncRNA|chr9:27656:30445:+	0	+
#Deleted in new
chr9	276993	277086	ENSG00000107099.15|DOCK8|pc|chr9:276993:277086:+	0	+
#Deleted in new
chr9	2782755	2782807	ENSG00000080608.9|PUM3|pc|chr9:2782755:2782807:-	0	-
#Deleted in new
chr9	28012354	28012405	ENSG00000174482.10|LINGO2|pc|chr9:28012354:28012405:-	0	-
#Deleted in new
chr9	28012354	28012407	ENSG00000174482.10|LINGO2|pc|chr9:28012354:28012407:-	0	-
#Deleted in new
chr9	280790	280905	ENSG00000107099.15|DOCK8|pc|chr9:280790:280905:+	0	+
#Deleted in new
chr9	284374	284567	ENSG00000107099.15|DOCK8|pc|chr9:284374:284567:+	0	+
#Deleted in new
chr9	29601	29739	ENSG00000181404.15|WASHC1|pc|chr9:29601:29739:-	0	-
#Partially deleted in new
chr9	30388934	30390100	ENSG00000280683.1|AL354704.1|lncRNA|chr9:30388934:30390100:-	0	-
#Deleted in new
chr9	30390303	30390357	ENSG00000280683.1|AL354704.1|lncRNA|chr9:30390303:30390357:-	0	-
#Deleted in new
chr9	30446695	30446811	ENSG00000280683.1|AL354704.1|lncRNA|chr9:30446695:30446811:-	0	-
#Deleted in new
chr9	30574382	30575012	ENSG00000280683.1|AL354704.1|lncRNA|chr9:30574382:30575012:-	0	-
#Deleted in new
chr9	30757	30891	ENSG00000227518.5|AL928970.1|lncRNA|chr9:30757:30891:+	0	+
#Deleted in new
chr9	31371610	31372199	ENSG00000260720.1|LINC01243|lncRNA|chr9:31371610:31372199:-	0	-
#Deleted in new
chr9	31381358	31381490	ENSG00000260720.1|LINC01243|lncRNA|chr9:31381358:31381490:-	0	-
#Deleted in new
chr9	3181588	3181889	ENSG00000236511.1|LINC01231|lncRNA|chr9:3181588:3181889:+	0	+
#Deleted in new
chr9	3186917	3187035	ENSG00000236511.1|LINC01231|lncRNA|chr9:3186917:3187035:+	0	+
#Deleted in new
chr9	3193459	3193594	ENSG00000236511.1|LINC01231|lncRNA|chr9:3193459:3193594:+	0	+
#Deleted in new
chr9	32565396	32565628	ENSG00000235453.9|SMIM27|pc|chr9:32565396:32565628:+	0	+
#Deleted in new
chr9	32643102	32643743	ENSG00000230516.1|AL589642.2|lncRNA|chr9:32643102:32643743:-	0	-
#Deleted in new
chr9	32997242	32997331	ENSG00000137074.18|APTX|pc|chr9:32997242:32997331:-	0	-
#Deleted in new
chr9	32997242	32997360	ENSG00000137074.18|APTX|pc|chr9:32997242:32997360:-	0	-
#Deleted in new
chr9	33036125	33036257	ENSG00000086061.15|DNAJA1|pc|chr9:33036125:33036257:+	0	+
#Partially deleted in new
chr9	33041763	33047391	ENSG00000122692.8|SMU1|pc|chr9:33041763:33047391:-	0	-
#Partially deleted in new
chr9	33104081	33104781	ENSG00000086062.12|B4GALT1|pc|chr9:33104081:33104781:-	0	-
#Deleted in new
chr9	33177419	33177469	ENSG00000233554.5|B4GALT1-AS1|lncRNA|chr9:33177419:33177469:+	0	+
#Deleted in new
chr9	33178895	33178957	ENSG00000233554.5|B4GALT1-AS1|lncRNA|chr9:33178895:33178957:+	0	+
#Deleted in new
chr9	33179324	33179710	ENSG00000233554.5|B4GALT1-AS1|lncRNA|chr9:33179324:33179710:+	0	+
#Deleted in new
chr9	33179324	33179983	ENSG00000233554.5|B4GALT1-AS1|lncRNA|chr9:33179324:33179983:+	0	+
#Deleted in new
chr9	33218364	33218459	ENSG00000122711.8|SPINK4|pc|chr9:33218364:33218459:+	0	+
#Deleted in new
chr9	33220951	33221108	ENSG00000122711.8|SPINK4|pc|chr9:33220951:33221108:+	0	+
#Partially deleted in new
chr9	33252470	33255308	ENSG00000107262.19|BAG1|pc|chr9:33252470:33255308:-	0	-
#Deleted in new
chr9	33262104	33262246	ENSG00000107262.19|BAG1|pc|chr9:33262104:33262246:-	0	-
#Deleted in new
chr9	33262217	33262246	ENSG00000107262.19|BAG1|pc|chr9:33262217:33262246:-	0	-
#Deleted in new
chr9	33347662	33348723	ENSG00000086102.18|NFX1|pc|chr9:33347662:33348723:+	0	+
#Deleted in new
chr9	33365232	33366009	ENSG00000086102.18|NFX1|pc|chr9:33365232:33366009:+	0	+
#Deleted in new
chr9	33401001	33401287	ENSG00000165269.12|AQP7|pc|chr9:33401001:33401287:-	0	-
#Deleted in new
chr9	33401236	33401287	ENSG00000165269.12|AQP7|pc|chr9:33401236:33401287:-	0	-
#Deleted in new
chr9	33401535	33401672	ENSG00000165269.12|AQP7|pc|chr9:33401535:33401672:-	0	-
#Deleted in new
chr9	33401535	33401880	ENSG00000165269.12|AQP7|pc|chr9:33401535:33401880:-	0	-
#Deleted in new
chr9	33404286	33404350	ENSG00000223678.1|AL356218.1|lncRNA|chr9:33404286:33404350:+	0	+
#Deleted in new
chr9	33409881	33409948	ENSG00000223678.1|AL356218.1|lncRNA|chr9:33409881:33409948:+	0	+
#Deleted in new
chr9	33512958	33513092	ENSG00000228072.1|AL139008.2|lncRNA|chr9:33512958:33513092:-	0	-
#Deleted in new
chr9	33514214	33514325	ENSG00000228072.1|AL139008.2|lncRNA|chr9:33514214:33514325:-	0	-
#Duplicated in new
chr9	33524393	33524695	ENSG00000230453.9|ANKRD18B|pc|chr9:33524393:33524695:+	0	+
#Partially deleted in new
chr9	33533438	33533847	ENSG00000230453.9|ANKRD18B|pc|chr9:33533438:33533847:+	0	+
#Deleted in new
chr9	33539448	33539502	ENSG00000230453.9|ANKRD18B|pc|chr9:33539448:33539502:+	0	+
#Deleted in new
chr9	33539448	33539558	ENSG00000230453.9|ANKRD18B|pc|chr9:33539448:33539558:+	0	+
#Deleted in new
chr9	33540077	33540212	ENSG00000230453.9|ANKRD18B|pc|chr9:33540077:33540212:+	0	+
#Deleted in new
chr9	33541146	33541227	ENSG00000230453.9|ANKRD18B|pc|chr9:33541146:33541227:+	0	+
#Deleted in new
chr9	33580694	33580762	ENSG00000226562.3|CYP4F26P|lncRNA|chr9:33580694:33580762:+	0	+
#Deleted in new
chr9	33602500	33602625	ENSG00000226562.3|CYP4F26P|lncRNA|chr9:33602500:33602625:+	0	+
#Deleted in new
chr9	33602811	33602919	ENSG00000226562.3|CYP4F26P|lncRNA|chr9:33602811:33602919:+	0	+
#Deleted in new
chr9	33604296	33604403	ENSG00000226562.3|CYP4F26P|lncRNA|chr9:33604296:33604403:+	0	+
#Deleted in new
chr9	33604296	33604570	ENSG00000226562.3|CYP4F26P|lncRNA|chr9:33604296:33604570:+	0	+
#Deleted in new
chr9	33605010	33605277	ENSG00000226562.3|CYP4F26P|lncRNA|chr9:33605010:33605277:+	0	+
#Deleted in new
chr9	33605010	33605282	ENSG00000226562.3|CYP4F26P|lncRNA|chr9:33605010:33605282:+	0	+
#Deleted in new
chr9	33605010	33605293	ENSG00000226562.3|CYP4F26P|lncRNA|chr9:33605010:33605293:+	0	+
#Deleted in new
chr9	33678089	33678287	ENSG00000281128.1|PTENP1-AS|lncRNA|chr9:33678089:33678287:+	0	+
#Deleted in new
chr9	33680893	33681073	ENSG00000281128.1|PTENP1-AS|lncRNA|chr9:33680893:33681073:+	0	+
#Deleted in new
chr9	33687758	33688011	ENSG00000281128.1|PTENP1-AS|lncRNA|chr9:33687758:33688011:+	0	+
#Deleted in new
chr9	33697458	33700986	ENSG00000260947.1|AL356489.2|lncRNA|chr9:33697458:33700986:+	0	+
#Deleted in new
chr9	33719689	33719868	ENSG00000227301.1|AL356489.1|lncRNA|chr9:33719689:33719868:+	0	+
#Deleted in new
chr9	33721590	33722555	ENSG00000227301.1|AL356489.1|lncRNA|chr9:33721590:33722555:+	0	+
#Deleted in new
chr9	33732974	33733244	ENSG00000233776.5|LINC01251|lncRNA|chr9:33732974:33733244:-	0	-
#Deleted in new
chr9	33732974	33733331	ENSG00000233776.5|LINC01251|lncRNA|chr9:33732974:33733331:-	0	-
#Deleted in new
chr9	33738287	33738416	ENSG00000233776.5|LINC01251|lncRNA|chr9:33738287:33738416:-	0	-
#Deleted in new
chr9	33928371	33928612	ENSG00000137073.21|UBAP2|pc|chr9:33928371:33928612:-	0	-
#Deleted in new
chr9	34084331	34084412	ENSG00000228352.2|AL354989.1|lncRNA|chr9:34084331:34084412:+	0	+
#Partially deleted in new
chr9	34095848	34096225	ENSG00000228352.2|AL354989.1|lncRNA|chr9:34095848:34096225:+	0	+
#Deleted in new
chr9	34220438	34220467	ENSG00000165006.13|UBAP1|pc|chr9:34220438:34220467:+	0	+
#Deleted in new
chr9	34393	34957	ENSG00000218839.4|FAM138C|lncRNA|chr9:34393:34957:-	0	-
#Deleted in new
chr9	34678099	34678268	ENSG00000230074.1|AL162231.2|lncRNA|chr9:34678099:34678268:+	0	+
#Deleted in new
chr9	34964	35264	ENSG00000218839.4|FAM138C|lncRNA|chr9:34964:35264:-	0	-
#Deleted in new
chr9	35041094	35041156	ENSG00000174038.12|C9orf131|pc|chr9:35041094:35041156:+	0	+
#Deleted in new
chr9	35041141	35041440	ENSG00000174038.12|C9orf131|pc|chr9:35041141:35041440:+	0	+
#Deleted in new
chr9	35041149	35041440	ENSG00000174038.12|C9orf131|pc|chr9:35041149:35041440:+	0	+
#Deleted in new
chr9	35059	35264	ENSG00000218839.4|FAM138C|lncRNA|chr9:35059:35264:-	0	-
#Partially deleted in new
chr9	35095878	35095976	ENSG00000165282.13|PIGO|pc|chr9:35095878:35095976:-	0	-
#Deleted in new
chr9	35097759	35098141	ENSG00000234181.1|AL353795.2|lncRNA|chr9:35097759:35098141:+	0	+
#Partially deleted in new
chr9	35227797	35227933	ENSG00000198722.14|UNC13B|pc|chr9:35227797:35227933:+	0	+
#Partially deleted in new
chr9	35360539	35362054	ENSG00000279083.1|AL160274.1|lncRNA|chr9:35360539:35362054:-	0	-
#Deleted in new
chr9	35642513	35642554	ENSG00000231393.1|AL357874.2|lncRNA|chr9:35642513:35642554:+	0	+
#Deleted in new
chr9	35642879	35643517	ENSG00000231393.1|AL357874.2|lncRNA|chr9:35642879:35643517:+	0	+
#Deleted in new
chr9	35646269	35646433	ENSG00000227933.1|AL357874.1|lncRNA|chr9:35646269:35646433:+	0	+
#Deleted in new
chr9	35646402	35646810	ENSG00000137101.12|CD72|pc|chr9:35646402:35646810:-	0	-
#Partially deleted in new
chr9	35661518	35662002	ENSG00000137135.17|ARHGEF39|pc|chr9:35661518:35662002:-	0	-
#Deleted in new
chr9	3568793	3568889	ENSG00000232104.3|RFX3-AS1|lncRNA|chr9:3568793:3568889:+	0	+
#Deleted in new
chr9	35757727	35757940	ENSG00000228843.2|AL133410.2|lncRNA|chr9:35757727:35757940:-	0	-
#Deleted in new
chr9	35772162	35772376	ENSG00000227388.2|AL133410.1|lncRNA|chr9:35772162:35772376:+	0	+
#Deleted in new
chr9	35772310	35772376	ENSG00000227388.2|AL133410.1|lncRNA|chr9:35772310:35772376:+	0	+
#Deleted in new
chr9	35780266	35780598	ENSG00000227388.2|AL133410.1|lncRNA|chr9:35780266:35780598:+	0	+
#Deleted in new
chr9	35786646	35786775	ENSG00000227388.2|AL133410.1|lncRNA|chr9:35786646:35786775:+	0	+
#Deleted in new
chr9	35816143	35816234	ENSG00000137103.17|TMEM8B|pc|chr9:35816143:35816234:+	0	+
#Deleted in new
chr9	35927479	35927577	ENSG00000235387.2|SPAAR|pc|chr9:35927479:35927577:+	0	+
#Deleted in new
chr9	35930011	35930134	ENSG00000235387.2|SPAAR|pc|chr9:35930011:35930134:+	0	+
#Deleted in new
chr9	35930056	35930134	ENSG00000235387.2|SPAAR|pc|chr9:35930056:35930134:+	0	+
#Deleted in new
chr9	35937016	35937151	ENSG00000235387.2|SPAAR|pc|chr9:35937016:35937151:+	0	+
#Deleted in new
chr9	35937016	35937153	ENSG00000235387.2|SPAAR|pc|chr9:35937016:35937153:+	0	+
#Deleted in new
chr9	36056979	36057013	ENSG00000122707.11|RECK|pc|chr9:36056979:36057013:+	0	+
#Deleted in new
chr9	3606692	3606738	ENSG00000232104.3|RFX3-AS1|lncRNA|chr9:3606692:3606738:+	0	+
#Deleted in new
chr9	36144275	36145041	ENSG00000122694.15|GLIPR2|pc|chr9:36144275:36145041:+	0	+
#Deleted in new
chr9	36146111	36146215	ENSG00000122694.15|GLIPR2|pc|chr9:36146111:36146215:+	0	+
#Partially deleted in new
chr9	36214443	36215291	ENSG00000159921.14|GNE|pc|chr9:36214443:36215291:-	0	-
#Deleted in new
chr9	36263197	36263442	ENSG00000122705.16|CLTA|pc|chr9:36263197:36263442:+	0	+
#Deleted in new
chr9	36265420	36265574	ENSG00000122705.16|CLTA|pc|chr9:36265420:36265574:+	0	+
#Deleted in new
chr9	36304066	36304781	ENSG00000122705.16|CLTA|pc|chr9:36304066:36304781:+	0	+
#Deleted in new
chr9	36372495	36372593	ENSG00000137075.17|RNF38|pc|chr9:36372495:36372593:-	0	-
#Deleted in new
chr9	36606805	36606923	ENSG00000165304.7|MELK|pc|chr9:36606805:36606923:+	0	+
#Deleted in new
chr9	36606829	36606923	ENSG00000165304.7|MELK|pc|chr9:36606829:36606923:+	0	+
#Deleted in new
chr9	36856554	36856582	ENSG00000258885.1|AL450267.1|lncRNA|chr9:36856554:36856582:+	0	+
#Deleted in new
chr9	3689331	3689626	ENSG00000226669.2|AL354977.1|lncRNA|chr9:3689331:3689626:-	0	-
#Partially deleted in new
chr9	3690836	3690959	ENSG00000232104.3|RFX3-AS1|lncRNA|chr9:3690836:3690959:+	0	+
#Deleted in new
chr9	37073530	37073867	ENSG00000232920.1|LINC01400|lncRNA|chr9:37073530:37073867:-	0	-
#Deleted in new
chr9	37075182	37075792	ENSG00000232920.1|LINC01400|lncRNA|chr9:37075182:37075792:-	0	-
#Deleted in new
chr9	37086667	37086874	ENSG00000281649.1|EBLN3P|lncRNA|chr9:37086667:37086874:+	0	+
#Partially deleted in new
chr9	37086667	37090507	ENSG00000281649.1|EBLN3P|lncRNA|chr9:37086667:37090507:+	0	+
#Deleted in new
chr9	37114884	37115490	ENSG00000233242.2|AL512604.2|lncRNA|chr9:37114884:37115490:-	0	-
#Deleted in new
chr9	37383177	37383291	ENSG00000224648.1|LINC01627|lncRNA|chr9:37383177:37383291:-	0	-
#Deleted in new
chr9	37432532	37432811	ENSG00000137106.17|GRHPR|pc|chr9:37432532:37432811:+	0	+
#Deleted in new
chr9	37433833	37433881	ENSG00000137106.17|GRHPR|pc|chr9:37433833:37433881:+	0	+
#Deleted in new
chr9	37509149	37509380	ENSG00000234160.1|AL513165.1|lncRNA|chr9:37509149:37509380:+	0	+
#Deleted in new
chr9	37510241	37510299	ENSG00000234160.1|AL513165.1|lncRNA|chr9:37510241:37510299:+	0	+
#Partially deleted in new
chr9	37514993	37516085	ENSG00000147912.12|FBXO10|pc|chr9:37514993:37516085:-	0	-
#Deleted in new
chr9	37535991	37536062	ENSG00000147912.12|FBXO10|pc|chr9:37535991:37536062:-	0	-
#Partially deleted in new
chr9	37582645	37585250	ENSG00000175768.12|TOMM5|pc|chr9:37582645:37585250:-	0	-
#Deleted in new
chr9	37586037	37586166	ENSG00000175768.12|TOMM5|pc|chr9:37586037:37586166:-	0	-
#Deleted in new
chr9	37669777	37670084	ENSG00000070601.9|FRMPD1|pc|chr9:37669777:37670084:+	0	+
#Deleted in new
chr9	37727927	37728028	ENSG00000255872.3|AL138752.2|pc|chr9:37727927:37728028:-	0	-
#Deleted in new
chr9	37766977	37767505	ENSG00000107371.12|EXOSC3|pc|chr9:37766977:37767505:-	0	-
#Partially deleted in new
chr9	37769556	37770019	ENSG00000165275.9|TRMT10B|pc|chr9:37769556:37770019:+	0	+
#Deleted in new
chr9	37832062	37832141	ENSG00000255872.3|AL138752.2|pc|chr9:37832062:37832141:-	0	-
#Deleted in new
chr9	37858479	37858520	ENSG00000122741.15|DCAF10|pc|chr9:37858479:37858520:+	0	+
#Partially deleted in new
chr9	37879399	37880748	ENSG00000122696.13|SLC25A51|pc|chr9:37879399:37880748:-	0	-
#Deleted in new
chr9	37881517	37881631	ENSG00000122696.13|SLC25A51|pc|chr9:37881517:37881631:-	0	-
#Deleted in new
chr9	37899828	37899950	ENSG00000122696.13|SLC25A51|pc|chr9:37899828:37899950:-	0	-
#Deleted in new
chr9	37899828	37899950	ENSG00000255872.3|AL138752.2|pc|chr9:37899828:37899950:-	0	-
#Deleted in new
chr9	38015373	38015480	ENSG00000255872.3|AL138752.2|pc|chr9:38015373:38015480:-	0	-
#Partially deleted in new
chr9	380278	381387	ENSG00000107099.15|DOCK8|pc|chr9:380278:381387:+	0	+
#Partially deleted in new
chr9	38375328	38375442	ENSG00000223716.2|AL135785.1|lncRNA|chr9:38375328:38375442:+	0	+
#Deleted in new
chr9	38376299	38376430	ENSG00000223716.2|AL135785.1|lncRNA|chr9:38376299:38376430:+	0	+
#Deleted in new
chr9	38394476	38394565	ENSG00000137124.7|ALDH1B1|pc|chr9:38394476:38394565:+	0	+
#Deleted in new
chr9	38540568	38540849	ENSG00000283486.2|FAM95C|pc|chr9:38540568:38540849:-	0	-
#Deleted in new
chr9	38540568	38541562	ENSG00000283486.2|FAM95C|pc|chr9:38540568:38541562:-	0	-
#Deleted in new
chr9	38540682	38540849	ENSG00000283486.2|FAM95C|pc|chr9:38540682:38540849:-	0	-
#Deleted in new
chr9	38541288	38541562	ENSG00000283486.2|FAM95C|pc|chr9:38541288:38541562:-	0	-
#Deleted in new
chr9	38541455	38541562	ENSG00000283486.2|FAM95C|pc|chr9:38541455:38541562:-	0	-
#Partially deleted in new
chr9	38542311	38544638	ENSG00000283486.2|FAM95C|pc|chr9:38542311:38544638:-	0	-
#Deleted in new
chr9	38542947	38543055	ENSG00000272904.1|AL390726.3|lncRNA|chr9:38542947:38543055:-	0	-
#Deleted in new
chr9	38542947	38543055	ENSG00000283486.2|FAM95C|pc|chr9:38542947:38543055:-	0	-
#Deleted in new
chr9	38542947	38543215	ENSG00000272934.1|AL390726.4|lncRNA|chr9:38542947:38543215:-	0	-
#Deleted in new
chr9	38543238	38543363	ENSG00000283486.2|FAM95C|pc|chr9:38543238:38543363:-	0	-
#Deleted in new
chr9	38543252	38543363	ENSG00000283486.2|FAM95C|pc|chr9:38543252:38543363:-	0	-
#Deleted in new
chr9	38543460	38543496	ENSG00000283486.2|FAM95C|pc|chr9:38543460:38543496:-	0	-
#Deleted in new
chr9	38545315	38545372	ENSG00000283486.2|FAM95C|pc|chr9:38545315:38545372:-	0	-
#Deleted in new
chr9	38571121	38571152	ENSG00000283486.2|FAM95C|pc|chr9:38571121:38571152:-	0	-
#Deleted in new
chr9	38571121	38571201	ENSG00000283486.2|FAM95C|pc|chr9:38571121:38571201:-	0	-
#Deleted in new
chr9	38603158	38603212	ENSG00000180071.19|ANKRD18A|pc|chr9:38603158:38603212:-	0	-
#Deleted in new
chr9	38604152	38604287	ENSG00000180071.19|ANKRD18A|pc|chr9:38604152:38604287:-	0	-
#Deleted in new
chr9	38604862	38604919	ENSG00000180071.19|ANKRD18A|pc|chr9:38604862:38604919:-	0	-
#Deleted in new
chr9	38620473	38620594	ENSG00000204860.4|FAM201A|lncRNA|chr9:38620473:38620594:+	0	+
#Deleted in new
chr9	38620733	38621022	ENSG00000204860.4|FAM201A|lncRNA|chr9:38620733:38621022:+	0	+
#Deleted in new
chr9	38621087	38621365	ENSG00000204860.4|FAM201A|lncRNA|chr9:38621087:38621365:+	0	+
#Partially deleted in new
chr9	38621831	38624990	ENSG00000204860.4|FAM201A|lncRNA|chr9:38621831:38624990:+	0	+
#Deleted in new
chr9	38650214	38650348	ENSG00000284612.1|AL591543.1|lncRNA|chr9:38650214:38650348:+	0	+
#Deleted in new
chr9	38650256	38650376	ENSG00000284612.1|AL591543.1|lncRNA|chr9:38650256:38650376:+	0	+
#Deleted in new
chr9	38705329	38705545	ENSG00000283329.1|FAM240B|pc|chr9:38705329:38705545:-	0	-
#Deleted in new
chr9	3878601	3878809	ENSG00000236724.1|AL137071.1|lncRNA|chr9:3878601:3878809:+	0	+
#Deleted in new
chr9	38804006	38804108	ENSG00000228467.2|AL845311.1|lncRNA|chr9:38804006:38804108:+	0	+
#Deleted in new
chr9	38848564	38848675	ENSG00000228467.2|AL845311.1|lncRNA|chr9:38848564:38848675:+	0	+
#Partially deleted in new
chr9	38851238	38851916	ENSG00000228467.2|AL845311.1|lncRNA|chr9:38851238:38851916:+	0	+
#Partially deleted in new
chr9	3900832	3901248	ENSG00000237009.2|GLIS3-AS1|lncRNA|chr9:3900832:3901248:+	0	+
#Deleted in new
chr9	39106484	39106607	ENSG00000106714.17|CNTNAP3|pc|chr9:39106484:39106607:-	0	-
#Deleted in new
chr9	39139749	39140067	ENSG00000106714.17|CNTNAP3|pc|chr9:39139749:39140067:-	0	-
#Deleted in new
chr9	39357131	39357189	ENSG00000204849.7|SPATA31A1|pc|chr9:39357131:39357189:+	0	+
#Duplicated in new
chr9	39357757	39357818	ENSG00000204849.7|SPATA31A1|pc|chr9:39357757:39357818:+	0	+
#Deleted in new
chr9	39371064	39371610	ENSG00000215112.6|FAM74A1|lncRNA|chr9:39371064:39371610:+	0	+
#Deleted in new
chr9	39371243	39371624	ENSG00000215112.6|FAM74A1|lncRNA|chr9:39371243:39371624:+	0	+
#Deleted in new
chr9	39376839	39376916	ENSG00000215112.6|FAM74A1|lncRNA|chr9:39376839:39376916:+	0	+
#Deleted in new
chr9	39384505	39384606	ENSG00000224038.1|BX005214.1|lncRNA|chr9:39384505:39384606:-	0	-
#Deleted in new
chr9	39385411	39385518	ENSG00000224038.1|BX005214.1|lncRNA|chr9:39385411:39385518:-	0	-
#Deleted in new
chr9	39395736	39396575	ENSG00000231140.3|BX005214.2|lncRNA|chr9:39395736:39396575:-	0	-
#Deleted in new
chr9	39397168	39397406	ENSG00000231140.3|BX005214.2|lncRNA|chr9:39397168:39397406:-	0	-
#Deleted in new
chr9	39405037	39405305	ENSG00000224038.1|BX005214.1|lncRNA|chr9:39405037:39405305:-	0	-
#Deleted in new
chr9	39748513	39748609	ENSG00000278175.3|GLIDR|lncRNA|chr9:39748513:39748609:-	0	-
#Deleted in new
chr9	39749458	39749686	ENSG00000278175.3|GLIDR|lncRNA|chr9:39749458:39749686:-	0	-
#Partially deleted in new
chr9	39777349	39778566	ENSG00000278175.3|GLIDR|lncRNA|chr9:39777349:39778566:-	0	-
#Deleted in new
chr9	39778893	39778944	ENSG00000278175.3|GLIDR|lncRNA|chr9:39778893:39778944:-	0	-
#Deleted in new
chr9	39807360	39809615	ENSG00000278175.3|GLIDR|lncRNA|chr9:39807360:39809615:-	0	-
#Deleted in new
chr9	39807380	39809633	ENSG00000278175.3|GLIDR|lncRNA|chr9:39807380:39809633:-	0	-
#Deleted in new
chr9	39807694	39808761	ENSG00000278175.3|GLIDR|lncRNA|chr9:39807694:39808761:-	0	-
#Deleted in new
chr9	39809485	39809615	ENSG00000278175.3|GLIDR|lncRNA|chr9:39809485:39809615:-	0	-
#Deleted in new
chr9	39809730	39810013	ENSG00000278175.3|GLIDR|lncRNA|chr9:39809730:39810013:-	0	-
#Deleted in new
chr9	39809730	39810054	ENSG00000278175.3|GLIDR|lncRNA|chr9:39809730:39810054:-	0	-
#Deleted in new
chr9	39809730	39810058	ENSG00000278175.3|GLIDR|lncRNA|chr9:39809730:39810058:-	0	-
#Deleted in new
chr9	39809730	39810063	ENSG00000278175.3|GLIDR|lncRNA|chr9:39809730:39810063:-	0	-
#Deleted in new
chr9	39809730	39810097	ENSG00000278175.3|GLIDR|lncRNA|chr9:39809730:39810097:-	0	-
#Deleted in new
chr9	39830012	39830110	ENSG00000283886.1|BX664615.2|lncRNA|chr9:39830012:39830110:-	0	-
#Deleted in new
chr9	39863832	39863942	ENSG00000283886.1|BX664615.2|lncRNA|chr9:39863832:39863942:-	0	-
#Deleted in new
chr9	39873909	39874206	ENSG00000283886.1|BX664615.2|lncRNA|chr9:39873909:39874206:-	0	-
#Deleted in new
chr9	39873909	39874562	ENSG00000283886.1|BX664615.2|lncRNA|chr9:39873909:39874562:-	0	-
#Deleted in new
chr9	39988443	39988564	ENSG00000284116.1|AL772307.1|lncRNA|chr9:39988443:39988564:-	0	-
#Deleted in new
chr9	39990509	39990582	ENSG00000284116.1|AL772307.1|lncRNA|chr9:39990509:39990582:-	0	-
#Deleted in new
chr9	40106357	40106611	ENSG00000284116.1|AL772307.1|lncRNA|chr9:40106357:40106611:-	0	-
#Deleted in new
chr9	40239680	40239812	ENSG00000183148.6|ANKRD20A2|pc|chr9:40239680:40239812:+	0	+
#Deleted in new
chr9	40290088	40290207	ENSG00000240240.8|BX664727.3|lncRNA|chr9:40290088:40290207:+	0	+
#Deleted in new
chr9	40291748	40291919	ENSG00000240240.8|BX664727.3|lncRNA|chr9:40291748:40291919:+	0	+
#Deleted in new
chr9	40321298	40324802	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40321298:40324802:+	0	+
#Deleted in new
chr9	40323570	40324085	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40323570:40324085:+	0	+
#Deleted in new
chr9	40323724	40324085	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40323724:40324085:+	0	+
#Deleted in new
chr9	40323724	40324182	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40323724:40324182:+	0	+
#Deleted in new
chr9	40324550	40324801	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40324550:40324801:+	0	+
#Deleted in new
chr9	40324550	40324802	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40324550:40324802:+	0	+
#Deleted in new
chr9	40324586	40324802	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40324586:40324802:+	0	+
#Deleted in new
chr9	40324666	40324802	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40324666:40324802:+	0	+
#Deleted in new
chr9	40324683	40324802	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40324683:40324802:+	0	+
#Deleted in new
chr9	40324865	40325092	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40324865:40325092:+	0	+
#Deleted in new
chr9	40324888	40325092	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40324888:40325092:+	0	+
#Deleted in new
chr9	40324934	40325092	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40324934:40325092:+	0	+
#Deleted in new
chr9	40324984	40325092	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40324984:40325092:+	0	+
#Deleted in new
chr9	40327942	40328105	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40327942:40328105:+	0	+
#Deleted in new
chr9	40328917	40329027	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40328917:40329027:+	0	+
#Deleted in new
chr9	40328917	40329057	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40328917:40329057:+	0	+
#Deleted in new
chr9	40328917	40329111	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40328917:40329111:+	0	+
#Deleted in new
chr9	40328917	40329129	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40328917:40329129:+	0	+
#Deleted in new
chr9	40328917	40329134	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40328917:40329134:+	0	+
#Deleted in new
chr9	40328917	40329218	ENSG00000223839.7|FAM95B1|lncRNA|chr9:40328917:40329218:+	0	+
#Deleted in new
chr9	40328917	40329221	ENSG00000240240.8|BX664727.3|lncRNA|chr9:40328917:40329221:+	0	+
#Deleted in new
chr9	40505398	40505820	ENSG00000276500.1|BMS1P14|lncRNA|chr9:40505398:40505820:-	0	-
#Deleted in new
chr9	40566097	40566281	ENSG00000276500.1|BMS1P14|lncRNA|chr9:40566097:40566281:-	0	-
#Deleted in new
chr9	40611251	40611740	ENSG00000276266.1|FP325318.1|lncRNA|chr9:40611251:40611740:-	0	-
#Deleted in new
chr9	40612229	40612366	ENSG00000276266.1|FP325318.1|lncRNA|chr9:40612229:40612366:-	0	-
#Deleted in new
chr9	40614791	40614942	ENSG00000276266.1|FP325318.1|lncRNA|chr9:40614791:40614942:-	0	-
#Deleted in new
chr9	40622073	40622155	ENSG00000276266.1|FP325318.1|lncRNA|chr9:40622073:40622155:-	0	-
#Deleted in new
chr9	40776325	40776356	ENSG00000275390.1|AL353626.1|lncRNA|chr9:40776325:40776356:+	0	+
#Deleted in new
chr9	40789272	40789346	ENSG00000275390.1|AL353626.1|lncRNA|chr9:40789272:40789346:+	0	+
#Deleted in new
chr9	40789275	40789346	ENSG00000275390.1|AL353626.1|lncRNA|chr9:40789275:40789346:+	0	+
#Deleted in new
chr9	40799010	40799083	ENSG00000275390.1|AL353626.1|lncRNA|chr9:40799010:40799083:+	0	+
#Deleted in new
chr9	40806095	40806329	ENSG00000275390.1|AL353626.1|lncRNA|chr9:40806095:40806329:+	0	+
#Deleted in new
chr9	40806095	40806344	ENSG00000275390.1|AL353626.1|lncRNA|chr9:40806095:40806344:+	0	+
#Deleted in new
chr9	41075975	41076392	ENSG00000225655.5|BX255923.1|lncRNA|chr9:41075975:41076392:+	0	+
#Deleted in new
chr9	41102462	41102531	ENSG00000276462.1|BX255923.2|lncRNA|chr9:41102462:41102531:-	0	-
#Deleted in new
chr9	41102730	41102841	ENSG00000276462.1|BX255923.2|lncRNA|chr9:41102730:41102841:-	0	-
#Deleted in new
chr9	41102730	41105159	ENSG00000276462.1|BX255923.2|lncRNA|chr9:41102730:41105159:-	0	-
#Deleted in new
chr9	41103684	41103816	ENSG00000276462.1|BX255923.2|lncRNA|chr9:41103684:41103816:-	0	-
#Deleted in new
chr9	41106164	41106229	ENSG00000276462.1|BX255923.2|lncRNA|chr9:41106164:41106229:-	0	-
#Deleted in new
chr9	41158122	41158329	ENSG00000215126.10|CBWD6|pc|chr9:41158122:41158329:-	0	-
#Partially deleted in new
chr9	41160937	41161021	ENSG00000215126.10|CBWD6|pc|chr9:41160937:41161021:-	0	-
#Deleted in new
chr9	41176297	41176914	ENSG00000215126.10|CBWD6|pc|chr9:41176297:41176914:-	0	-
#Deleted in new
chr9	41176297	41177919	ENSG00000215126.10|CBWD6|pc|chr9:41176297:41177919:-	0	-
#Deleted in new
chr9	41198806	41198865	ENSG00000215126.10|CBWD6|pc|chr9:41198806:41198865:-	0	-
#Deleted in new
chr9	41199103	41199261	ENSG00000215126.10|CBWD6|pc|chr9:41199103:41199261:-	0	-
#Deleted in new
chr9	41269915	41273281	ENSG00000279561.2|AL845472.1|lncRNA|chr9:41269915:41273281:-	0	-
#Deleted in new
chr9	41269915	41273997	ENSG00000279561.2|AL845472.1|lncRNA|chr9:41269915:41273997:-	0	-
#Deleted in new
chr9	41273283	41273997	ENSG00000279561.2|AL845472.1|lncRNA|chr9:41273283:41273997:-	0	-
#Deleted in new
chr9	41276279	41276436	ENSG00000275450.1|PTGER4P2-CDK2AP2P2|lncRNA|chr9:41276279:41276436:+	0	+
#Partially deleted in new
chr9	41760090	41761497	ENSG00000275297.1|AL162731.1|lncRNA|chr9:41760090:41761497:+	0	+
#Deleted in new
chr9	41763640	41763762	ENSG00000275297.1|AL162731.1|lncRNA|chr9:41763640:41763762:+	0	+
#Deleted in new
chr9	41763852	41764175	ENSG00000275297.1|AL162731.1|lncRNA|chr9:41763852:41764175:+	0	+
#Deleted in new
chr9	41926655	41926778	ENSG00000154529.14|CNTNAP3B|pc|chr9:41926655:41926778:-	0	-
#Deleted in new
chr9	41960002	41960320	ENSG00000154529.14|CNTNAP3B|pc|chr9:41960002:41960320:-	0	-
#Deleted in new
chr9	42185068	42185126	ENSG00000185775.9|SPATA31A6|pc|chr9:42185068:42185126:+	0	+
#Duplicated in new
chr9	42185694	42185755	ENSG00000185775.9|SPATA31A6|pc|chr9:42185694:42185755:+	0	+
#Deleted in new
chr9	42198999	42199649	ENSG00000277260.1|FAM74A7|lncRNA|chr9:42198999:42199649:+	0	+
#Deleted in new
chr9	42204911	42204988	ENSG00000277260.1|FAM74A7|lncRNA|chr9:42204911:42204988:+	0	+
#Deleted in new
chr9	42231810	42231836	ENSG00000275649.1|AL445584.2|lncRNA|chr9:42231810:42231836:+	0	+
#Deleted in new
chr9	42343853	42343925	ENSG00000275649.1|AL445584.2|lncRNA|chr9:42343853:42343925:+	0	+
#Deleted in new
chr9	42354071	42354454	ENSG00000275649.1|AL445584.2|lncRNA|chr9:42354071:42354454:+	0	+
#Deleted in new
chr9	42566678	42568932	ENSG00000237357.2|BX088651.4|lncRNA|chr9:42566678:42568932:-	0	-
#Deleted in new
chr9	42566992	42568059	ENSG00000237357.2|BX088651.4|lncRNA|chr9:42566992:42568059:-	0	-
#Deleted in new
chr9	42568784	42568914	ENSG00000237357.2|BX088651.4|lncRNA|chr9:42568784:42568914:-	0	-
#Deleted in new
chr9	42569028	42569310	ENSG00000237357.2|BX088651.4|lncRNA|chr9:42569028:42569310:-	0	-
#Deleted in new
chr9	42569028	42569353	ENSG00000237357.2|BX088651.4|lncRNA|chr9:42569028:42569353:-	0	-
#Deleted in new
chr9	42579413	42580042	ENSG00000229311.1|BX088651.2|lncRNA|chr9:42579413:42580042:-	0	-
#Deleted in new
chr9	42583265	42583351	ENSG00000229311.1|BX088651.2|lncRNA|chr9:42583265:42583351:-	0	-
#Deleted in new
chr9	42583635	42586534	ENSG00000229311.1|BX088651.2|lncRNA|chr9:42583635:42586534:-	0	-
#Deleted in new
chr9	42707799	42710697	ENSG00000233424.2|BX664718.1|lncRNA|chr9:42707799:42710697:+	0	+
#Deleted in new
chr9	42710979	42711067	ENSG00000233424.2|BX664718.1|lncRNA|chr9:42710979:42711067:+	0	+
#Deleted in new
chr9	42714301	42714539	ENSG00000233424.2|BX664718.1|lncRNA|chr9:42714301:42714539:+	0	+
#Partially deleted in new
chr9	42981771	42982569	ENSG00000276128.1|AL591441.1|lncRNA|chr9:42981771:42982569:+	0	+
#Deleted in new
chr9	42986718	42988167	ENSG00000276128.1|AL591441.1|lncRNA|chr9:42986718:42988167:+	0	+
#Deleted in new
chr9	4347080	4347183	ENSG00000107249.21|GLIS3|pc|chr9:4347080:4347183:-	0	-
#Deleted in new
chr9	4348231	4348392	ENSG00000107249.21|GLIS3|pc|chr9:4348231:4348392:-	0	-
#Deleted in new
chr9	454303	454606	ENSG00000227155.7|AL161725.1|lncRNA|chr9:454303:454606:-	0	-
#Deleted in new
chr9	454431	454606	ENSG00000227155.7|AL161725.1|lncRNA|chr9:454431:454606:-	0	-
#Deleted in new
chr9	454438	454606	ENSG00000227155.7|AL161725.1|lncRNA|chr9:454438:454606:-	0	-
#Deleted in new
chr9	454446	454606	ENSG00000227155.7|AL161725.1|lncRNA|chr9:454446:454606:-	0	-
#Deleted in new
chr9	454506	454606	ENSG00000227155.7|AL161725.1|lncRNA|chr9:454506:454606:-	0	-
#Deleted in new
chr9	454575	454606	ENSG00000227155.7|AL161725.1|lncRNA|chr9:454575:454606:-	0	-
#Deleted in new
chr9	454584	454606	ENSG00000227155.7|AL161725.1|lncRNA|chr9:454584:454606:-	0	-
#Deleted in new
chr9	456200	456207	ENSG00000227155.7|AL161725.1|lncRNA|chr9:456200:456207:-	0	-
#Deleted in new
chr9	456200	456703	ENSG00000227155.7|AL161725.1|lncRNA|chr9:456200:456703:-	0	-
#Deleted in new
chr9	456200	456988	ENSG00000227155.7|AL161725.1|lncRNA|chr9:456200:456988:-	0	-
#Deleted in new
chr9	456203	456703	ENSG00000227155.7|AL161725.1|lncRNA|chr9:456203:456703:-	0	-
#Deleted in new
chr9	456210	456703	ENSG00000227155.7|AL161725.1|lncRNA|chr9:456210:456703:-	0	-
#Deleted in new
chr9	456517	456703	ENSG00000227155.7|AL161725.1|lncRNA|chr9:456517:456703:-	0	-
#Deleted in new
chr9	456520	456703	ENSG00000227155.7|AL161725.1|lncRNA|chr9:456520:456703:-	0	-
#Deleted in new
chr9	456529	456703	ENSG00000227155.7|AL161725.1|lncRNA|chr9:456529:456703:-	0	-
#Deleted in new
chr9	456544	456703	ENSG00000227155.7|AL161725.1|lncRNA|chr9:456544:456703:-	0	-
#Deleted in new
chr9	456914	457047	ENSG00000227155.7|AL161725.1|lncRNA|chr9:456914:457047:-	0	-
#Deleted in new
chr9	457003	457047	ENSG00000227155.7|AL161725.1|lncRNA|chr9:457003:457047:-	0	-
#Deleted in new
chr9	458116	458281	ENSG00000227155.7|AL161725.1|lncRNA|chr9:458116:458281:-	0	-
#Deleted in new
chr9	458369	458423	ENSG00000227155.7|AL161725.1|lncRNA|chr9:458369:458423:-	0	-
#Deleted in new
chr9	459715	459815	ENSG00000227155.7|AL161725.1|lncRNA|chr9:459715:459815:-	0	-
#Deleted in new
chr9	459715	459866	ENSG00000227155.7|AL161725.1|lncRNA|chr9:459715:459866:-	0	-
#Deleted in new
chr9	459715	460227	ENSG00000227155.7|AL161725.1|lncRNA|chr9:459715:460227:-	0	-
#Deleted in new
chr9	459715	460507	ENSG00000227155.7|AL161725.1|lncRNA|chr9:459715:460507:-	0	-
#Partially deleted in new
chr9	4625637	4629168	ENSG00000106686.16|SPATA6L|pc|chr9:4625637:4629168:-	0	-
#Deleted in new
chr9	4626425	4626555	ENSG00000106686.16|SPATA6L|pc|chr9:4626425:4626555:-	0	-
#Deleted in new
chr9	4627752	4627856	ENSG00000106686.16|SPATA6L|pc|chr9:4627752:4627856:-	0	-
#Deleted in new
chr9	465961	466065	ENSG00000227155.7|AL161725.1|lncRNA|chr9:465961:466065:-	0	-
#Deleted in new
chr9	465961	466069	ENSG00000227155.7|AL161725.1|lncRNA|chr9:465961:466069:-	0	-
#Deleted in new
chr9	466687	466853	ENSG00000227155.7|AL161725.1|lncRNA|chr9:466687:466853:-	0	-
#Deleted in new
chr9	466687	466866	ENSG00000227155.7|AL161725.1|lncRNA|chr9:466687:466866:-	0	-
#Deleted in new
chr9	466687	467219	ENSG00000227155.7|AL161725.1|lncRNA|chr9:466687:467219:-	0	-
#Deleted in new
chr9	466687	467390	ENSG00000227155.7|AL161725.1|lncRNA|chr9:466687:467390:-	0	-
#Deleted in new
chr9	466899	467336	ENSG00000227155.7|AL161725.1|lncRNA|chr9:466899:467336:-	0	-
#Deleted in new
chr9	4676599	4676749	ENSG00000273061.1|CDC37L1-AS1|lncRNA|chr9:4676599:4676749:-	0	-
#Deleted in new
chr9	470290	470374	ENSG00000107104.18|KANK1|pc|chr9:470290:470374:+	0	+
#Deleted in new
chr9	470555	470682	ENSG00000107104.18|KANK1|pc|chr9:470555:470682:+	0	+
#Deleted in new
chr9	470591	470677	ENSG00000107104.18|KANK1|pc|chr9:470591:470677:+	0	+
#Deleted in new
chr9	470764	470816	ENSG00000227155.7|AL161725.1|lncRNA|chr9:470764:470816:-	0	-
#Deleted in new
chr9	470764	470934	ENSG00000227155.7|AL161725.1|lncRNA|chr9:470764:470934:-	0	-
#Deleted in new
chr9	470764	470961	ENSG00000227155.7|AL161725.1|lncRNA|chr9:470764:470961:-	0	-
#Deleted in new
chr9	4741971	4742043	ENSG00000147853.16|AK3|pc|chr9:4741971:4742043:-	0	-
#Deleted in new
chr9	476627	476769	ENSG00000107104.18|KANK1|pc|chr9:476627:476769:+	0	+
#Deleted in new
chr9	4836725	4836764	ENSG00000120158.11|RCL1|pc|chr9:4836725:4836764:+	0	+
#Deleted in new
chr9	484281	484491	ENSG00000107104.18|KANK1|pc|chr9:484281:484491:+	0	+
#Deleted in new
chr9	487773	487803	ENSG00000228115.1|AL161725.2|lncRNA|chr9:487773:487803:+	0	+
#Deleted in new
chr9	4884487	4885917	ENSG00000120158.11|RCL1|pc|chr9:4884487:4885917:+	0	+
#Partially deleted in new
chr9	504715	504754	ENSG00000107104.18|KANK1|pc|chr9:504715:504754:+	0	+
#Partially deleted in new
chr9	5125964	5126446	ENSG00000096968.13|JAK2|pc|chr9:5125964:5126446:+	0	+
#Deleted in new
chr9	5131978	5132141	ENSG00000120210.6|INSL6|pc|chr9:5131978:5132141:-	0	-
#Deleted in new
chr9	5132805	5132844	ENSG00000120210.6|INSL6|pc|chr9:5132805:5132844:-	0	-
#Deleted in new
chr9	5133424	5133592	ENSG00000120210.6|INSL6|pc|chr9:5133424:5133592:-	0	-
#Partially deleted in new
chr9	5233653	5235304	ENSG00000120211.4|INSL4|pc|chr9:5233653:5235304:+	0	+
#Deleted in new
chr9	5304095	5304196	ENSG00000107014.8|RLN2|pc|chr9:5304095:5304196:-	0	-
#Deleted in new
chr9	5339261	5339396	ENSG00000107018.7|RLN1|pc|chr9:5339261:5339396:-	0	-
#Deleted in new
chr9	5381862	5382031	ENSG00000107020.9|PLGRKT|pc|chr9:5381862:5382031:-	0	-
#Deleted in new
chr9	5392332	5392649	ENSG00000107020.9|PLGRKT|pc|chr9:5392332:5392649:-	0	-
#Deleted in new
chr9	539515	539633	ENSG00000107104.18|KANK1|pc|chr9:539515:539633:+	0	+
#Deleted in new
chr9	540507	540667	ENSG00000107104.18|KANK1|pc|chr9:540507:540667:+	0	+
#Deleted in new
chr9	5450502	5450596	ENSG00000120217.13|CD274|pc|chr9:5450502:5450596:+	0	+
#Deleted in new
chr9	5450524	5450596	ENSG00000120217.13|CD274|pc|chr9:5450524:5450596:+	0	+
#Deleted in new
chr9	5563161	5563211	ENSG00000197646.7|PDCD1LG2|pc|chr9:5563161:5563211:+	0	+
#Deleted in new
chr9	5584489	5584845	ENSG00000231509.1|AL162253.1|lncRNA|chr9:5584489:5584845:+	0	+
#Deleted in new
chr9	5719020	5719498	ENSG00000225408.1|AL136980.1|lncRNA|chr9:5719020:5719498:-	0	-
#Deleted in new
chr9	5791233	5791282	ENSG00000099219.13|ERMP1|pc|chr9:5791233:5791282:-	0	-
#Deleted in new
chr9	5881595	5881675	ENSG00000183354.11|KIAA2026|pc|chr9:5881595:5881675:-	0	-
#Deleted in new
chr9	5898080	5898186	ENSG00000120215.9|MLANA|pc|chr9:5898080:5898186:+	0	+
#Deleted in new
chr9	5898936	5899255	ENSG00000183354.11|KIAA2026|pc|chr9:5898936:5899255:-	0	-
#Deleted in new
chr9	5913857	5913860	ENSG00000183354.11|KIAA2026|pc|chr9:5913857:5913860:-	0	-
#Deleted in new
chr9	5913857	5914062	ENSG00000183354.11|KIAA2026|pc|chr9:5913857:5914062:-	0	-
#Deleted in new
chr9	6047359	6047508	ENSG00000228739.1|AL162384.1|lncRNA|chr9:6047359:6047508:+	0	+
#Deleted in new
chr9	6066364	6066714	ENSG00000228739.1|AL162384.1|lncRNA|chr9:6066364:6066714:+	0	+
#Deleted in new
chr9	60915822	60915880	ENSG00000276581.2|SPATA31A5|pc|chr9:60915822:60915880:+	0	+
#Duplicated in new
chr9	60916448	60916509	ENSG00000276581.2|SPATA31A5|pc|chr9:60916448:60916509:+	0	+
#Deleted in new
chr9	60943310	60943411	ENSG00000276422.1|AL590491.2|lncRNA|chr9:60943310:60943411:-	0	-
#Deleted in new
chr9	60944216	60944323	ENSG00000276422.1|AL590491.2|lncRNA|chr9:60944216:60944323:-	0	-
#Deleted in new
chr9	60955251	60955606	ENSG00000276422.1|AL590491.2|lncRNA|chr9:60955251:60955606:-	0	-
#Deleted in new
chr9	60955482	60955606	ENSG00000276422.1|AL590491.2|lncRNA|chr9:60955482:60955606:-	0	-
#Deleted in new
chr9	60956423	60956486	ENSG00000276422.1|AL590491.2|lncRNA|chr9:60956423:60956486:-	0	-
#Deleted in new
chr9	60963841	60964132	ENSG00000276422.1|AL590491.2|lncRNA|chr9:60963841:60964132:-	0	-
#Deleted in new
chr9	60963841	60964185	ENSG00000276422.1|AL590491.2|lncRNA|chr9:60963841:60964185:-	0	-
#Deleted in new
chr9	61190958	61191325	ENSG00000276040.4|SPATA31A7|pc|chr9:61190958:61191325:+	0	+
#Deleted in new
chr9	61191327	61191510	ENSG00000276040.4|SPATA31A7|pc|chr9:61191327:61191510:+	0	+
#Deleted in new
chr9	61191452	61191510	ENSG00000276040.4|SPATA31A7|pc|chr9:61191452:61191510:+	0	+
#Duplicated in new
chr9	61192078	61192139	ENSG00000276040.4|SPATA31A7|pc|chr9:61192078:61192139:+	0	+
#Split in new
chr9	61202819	61203446	ENSG00000277412.1|BX005040.3|lncRNA|chr9:61202819:61203446:-	0	-
#Deleted in new
chr9	61229912	61230975	ENSG00000275676.1|BX005040.1|lncRNA|chr9:61229912:61230975:-	0	-
#Deleted in new
chr9	61231800	61231863	ENSG00000275676.1|BX005040.1|lncRNA|chr9:61231800:61231863:-	0	-
#Deleted in new
chr9	61854161	61854376	ENSG00000154537.4|FAM27C|lncRNA|chr9:61854161:61854376:+	0	+
#Deleted in new
chr9	61854930	61855331	ENSG00000154537.4|FAM27C|lncRNA|chr9:61854930:61855331:+	0	+
#Partially deleted in new
chr9	61972242	61973649	ENSG00000231527.5|CR769775.1|lncRNA|chr9:61972242:61973649:+	0	+
#Partially deleted in new
chr9	61972428	61972563	ENSG00000231527.5|CR769775.1|lncRNA|chr9:61972428:61972563:+	0	+
#Deleted in new
chr9	61973502	61973679	ENSG00000231527.5|CR769775.1|lncRNA|chr9:61973502:61973679:+	0	+
#Deleted in new
chr9	61975790	61975912	ENSG00000231527.5|CR769775.1|lncRNA|chr9:61975790:61975912:+	0	+
#Deleted in new
chr9	61976002	61976315	ENSG00000231527.5|CR769775.1|lncRNA|chr9:61976002:61976315:+	0	+
#Deleted in new
chr9	61976002	61976380	ENSG00000231527.5|CR769775.1|lncRNA|chr9:61976002:61976380:+	0	+
#Partially deleted in new
chr9	61982795	61986934	ENSG00000284471.1|CR769775.4|lncRNA|chr9:61982795:61986934:+	0	+
#Deleted in new
chr9	62028425	62028527	ENSG00000231838.1|CR769775.2|lncRNA|chr9:62028425:62028527:+	0	+
#Deleted in new
chr9	62072999	62073110	ENSG00000231838.1|CR769775.2|lncRNA|chr9:62072999:62073110:+	0	+
#Partially deleted in new
chr9	62075671	62076349	ENSG00000231838.1|CR769775.2|lncRNA|chr9:62075671:62076349:+	0	+
#Deleted in new
chr9	62349940	62350247	ENSG00000231212.1|AL590399.3|lncRNA|chr9:62349940:62350247:-	0	-
#Deleted in new
chr9	62350142	62350247	ENSG00000231212.1|AL590399.3|lncRNA|chr9:62350142:62350247:-	0	-
#Duplicated in new
chr9	62351146	62351536	ENSG00000231212.1|AL590399.3|lncRNA|chr9:62351146:62351536:-	0	-
#Deleted in new
chr9	62374127	62376382	ENSG00000204802.3|AL590399.1|lncRNA|chr9:62374127:62376382:-	0	-
#Deleted in new
chr9	62374461	62375528	ENSG00000204802.3|AL590399.1|lncRNA|chr9:62374461:62375528:-	0	-
#Deleted in new
chr9	62375327	62375528	ENSG00000204802.3|AL590399.1|lncRNA|chr9:62375327:62375528:-	0	-
#Deleted in new
chr9	62375331	62375528	ENSG00000204802.3|AL590399.1|lncRNA|chr9:62375331:62375528:-	0	-
#Deleted in new
chr9	62376071	62376126	ENSG00000204802.3|AL590399.1|lncRNA|chr9:62376071:62376126:-	0	-
#Deleted in new
chr9	62376252	62376382	ENSG00000204802.3|AL590399.1|lncRNA|chr9:62376252:62376382:-	0	-
#Deleted in new
chr9	62376252	62376836	ENSG00000204802.3|AL590399.1|lncRNA|chr9:62376252:62376836:-	0	-
#Deleted in new
chr9	62376497	62376780	ENSG00000204802.3|AL590399.1|lncRNA|chr9:62376497:62376780:-	0	-
#Deleted in new
chr9	62376497	62376783	ENSG00000204802.3|AL590399.1|lncRNA|chr9:62376497:62376783:-	0	-
#Deleted in new
chr9	62387170	62387510	ENSG00000233651.2|AL590399.5|lncRNA|chr9:62387170:62387510:-	0	-
#Deleted in new
chr9	62390735	62390821	ENSG00000233651.2|AL590399.5|lncRNA|chr9:62390735:62390821:-	0	-
#Deleted in new
chr9	62391105	62394004	ENSG00000233651.2|AL590399.5|lncRNA|chr9:62391105:62394004:-	0	-
#Deleted in new
chr9	6242191	6242734	ENSG00000137033.11|IL33|pc|chr9:6242191:6242734:+	0	+
#Deleted in new
chr9	62515190	62518085	ENSG00000232827.2|LINC01189|lncRNA|chr9:62515190:62518085:+	0	+
#Deleted in new
chr9	62518369	62518455	ENSG00000232827.2|LINC01189|lncRNA|chr9:62518369:62518455:+	0	+
#Deleted in new
chr9	62521678	62522018	ENSG00000232827.2|LINC01189|lncRNA|chr9:62521678:62522018:+	0	+
#Deleted in new
chr9	62532336	62532688	ENSG00000226007.2|BX005266.2|lncRNA|chr9:62532336:62532688:+	0	+
#Deleted in new
chr9	62532363	62532688	ENSG00000226007.2|BX005266.2|lncRNA|chr9:62532363:62532688:+	0	+
#Deleted in new
chr9	62532802	62532932	ENSG00000226007.2|BX005266.2|lncRNA|chr9:62532802:62532932:+	0	+
#Deleted in new
chr9	62532802	62534722	ENSG00000226007.2|BX005266.2|lncRNA|chr9:62532802:62534722:+	0	+
#Deleted in new
chr9	62533057	62533113	ENSG00000226007.2|BX005266.2|lncRNA|chr9:62533057:62533113:+	0	+
#Deleted in new
chr9	62533657	62533858	ENSG00000226007.2|BX005266.2|lncRNA|chr9:62533657:62533858:+	0	+
#Deleted in new
chr9	62533657	62534724	ENSG00000226007.2|BX005266.2|lncRNA|chr9:62533657:62534724:+	0	+
#Deleted in new
chr9	62801460	62801531	ENSG00000238113.6|LINC01410|lncRNA|chr9:62801460:62801531:+	0	+
#Deleted in new
chr9	62801464	62801531	ENSG00000238113.6|LINC01410|lncRNA|chr9:62801464:62801531:+	0	+
#Deleted in new
chr9	62802075	62802209	ENSG00000238113.6|LINC01410|lncRNA|chr9:62802075:62802209:+	0	+
#Deleted in new
chr9	62803983	62804140	ENSG00000238113.6|LINC01410|lncRNA|chr9:62803983:62804140:+	0	+
#Deleted in new
chr9	62806310	62806333	ENSG00000238113.6|LINC01410|lncRNA|chr9:62806310:62806333:+	0	+
#Deleted in new
chr9	62809767	62810186	ENSG00000238113.6|LINC01410|lncRNA|chr9:62809767:62810186:+	0	+
#Deleted in new
chr9	62809767	62811589	ENSG00000238113.6|LINC01410|lncRNA|chr9:62809767:62811589:+	0	+
#Deleted in new
chr9	62811938	62812075	ENSG00000238113.6|LINC01410|lncRNA|chr9:62811938:62812075:+	0	+
#Partially deleted in new
chr9	62812792	62813486	ENSG00000238113.6|LINC01410|lncRNA|chr9:62812792:62813486:+	0	+
#Deleted in new
chr9	62865596	62865733	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62865596:62865733:-	0	-
#Deleted in new
chr9	62866966	62867110	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62866966:62867110:-	0	-
#Deleted in new
chr9	62867696	62867876	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62867696:62867876:-	0	-
#Deleted in new
chr9	62867696	62868233	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62867696:62868233:-	0	-
#Deleted in new
chr9	62867707	62868233	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62867707:62868233:-	0	-
#Deleted in new
chr9	62868138	62868233	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62868138:62868233:-	0	-
#Deleted in new
chr9	62868196	62868233	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62868196:62868233:-	0	-
#Deleted in new
chr9	62869189	62869300	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62869189:62869300:-	0	-
#Deleted in new
chr9	62869189	62869304	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62869189:62869304:-	0	-
#Deleted in new
chr9	62869189	62869868	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62869189:62869868:-	0	-
#Deleted in new
chr9	62873366	62873691	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62873366:62873691:-	0	-
#Deleted in new
chr9	62873592	62873691	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62873592:62873691:-	0	-
#Deleted in new
chr9	62876549	62876614	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62876549:62876614:-	0	-
#Deleted in new
chr9	62877148	62877428	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62877148:62877428:-	0	-
#Deleted in new
chr9	62880522	62880620	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62880522:62880620:-	0	-
#Deleted in new
chr9	62897418	62898087	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62897418:62898087:-	0	-
#Deleted in new
chr9	62897448	62897734	ENSG00000170161.6|AL512625.1|lncRNA|chr9:62897448:62897734:+	0	+
#Deleted in new
chr9	62897451	62897734	ENSG00000170161.6|AL512625.1|lncRNA|chr9:62897451:62897734:+	0	+
#Deleted in new
chr9	62897528	62897707	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62897528:62897707:-	0	-
#Deleted in new
chr9	62897528	62897777	ENSG00000234665.8|AL512625.3|lncRNA|chr9:62897528:62897777:-	0	-
#Deleted in new
chr9	62897849	62897979	ENSG00000170161.6|AL512625.1|lncRNA|chr9:62897849:62897979:+	0	+
#Deleted in new
chr9	62897849	62900104	ENSG00000170161.6|AL512625.1|lncRNA|chr9:62897849:62900104:+	0	+
#Deleted in new
chr9	62898105	62898160	ENSG00000170161.6|AL512625.1|lncRNA|chr9:62898105:62898160:+	0	+
#Deleted in new
chr9	62898703	62898904	ENSG00000170161.6|AL512625.1|lncRNA|chr9:62898703:62898904:+	0	+
#Deleted in new
chr9	62898703	62899770	ENSG00000170161.6|AL512625.1|lncRNA|chr9:62898703:62899770:+	0	+
#Partially deleted in new
chr9	63802143	63802839	ENSG00000225411.2|CR786580.1|lncRNA|chr9:63802143:63802839:-	0	-
#Deleted in new
chr9	63803556	63803693	ENSG00000225411.2|CR786580.1|lncRNA|chr9:63803556:63803693:-	0	-
#Deleted in new
chr9	63804040	63805861	ENSG00000225411.2|CR786580.1|lncRNA|chr9:63804040:63805861:-	0	-
#Deleted in new
chr9	63811490	63811647	ENSG00000225411.2|CR786580.1|lncRNA|chr9:63811490:63811647:-	0	-
#Deleted in new
chr9	63814092	63814159	ENSG00000225411.2|CR786580.1|lncRNA|chr9:63814092:63814159:-	0	-
#Partially deleted in new
chr9	64369393	64369877	ENSG00000172014.12|ANKRD20A4|pc|chr9:64369393:64369877:+	0	+
#Partially deleted in new
chr9	64369410	64369877	ENSG00000172014.12|ANKRD20A4|pc|chr9:64369410:64369877:+	0	+
#Deleted in new
chr9	64370716	64370942	ENSG00000172014.12|ANKRD20A4|pc|chr9:64370716:64370942:+	0	+
#Deleted in new
chr9	6449339	6449558	ENSG00000233367.1|AL133480.1|lncRNA|chr9:6449339:6449558:-	0	-
#Deleted in new
chr9	6484596	6484686	ENSG00000147854.16|UHRF2|pc|chr9:6484596:6484686:+	0	+
#Deleted in new
chr9	6534066	6534179	ENSG00000178445.9|GLDC|pc|chr9:6534066:6534179:-	0	-
#Deleted in new
chr9	6567177	6567462	ENSG00000178445.9|GLDC|pc|chr9:6567177:6567462:-	0	-
#Partially deleted in new
chr9	65682765	65683342	ENSG00000147996.16|CBWD5|pc|chr9:65682765:65683342:+	0	+
#Deleted in new
chr9	65688400	65689021	ENSG00000147996.16|CBWD5|pc|chr9:65688400:65689021:+	0	+
#Partially deleted in new
chr9	65704330	65704414	ENSG00000147996.16|CBWD5|pc|chr9:65704330:65704414:+	0	+
#Deleted in new
chr9	65707012	65707152	ENSG00000147996.16|CBWD5|pc|chr9:65707012:65707152:+	0	+
#Deleted in new
chr9	6585038	6585075	ENSG00000178445.9|GLDC|pc|chr9:6585038:6585075:-	0	-
#Deleted in new
chr9	66014524	66015977	ENSG00000274893.1|AL136317.2|lncRNA|chr9:66014524:66015977:-	0	-
#Partially deleted in new
chr9	66020015	66020816	ENSG00000274893.1|AL136317.2|lncRNA|chr9:66020015:66020816:-	0	-
#Deleted in new
chr9	66047083	66047387	ENSG00000274628.4|AL669942.1|lncRNA|chr9:66047083:66047387:-	0	-
#Deleted in new
chr9	66047086	66047387	ENSG00000274628.4|AL669942.1|lncRNA|chr9:66047086:66047387:-	0	-
#Deleted in new
chr9	66047112	66047387	ENSG00000274628.4|AL669942.1|lncRNA|chr9:66047112:66047387:-	0	-
#Deleted in new
chr9	66047169	66047387	ENSG00000274628.4|AL669942.1|lncRNA|chr9:66047169:66047387:-	0	-
#Deleted in new
chr9	66051212	66051416	ENSG00000274628.4|AL669942.1|lncRNA|chr9:66051212:66051416:-	0	-
#Deleted in new
chr9	66051502	66051718	ENSG00000274628.4|AL669942.1|lncRNA|chr9:66051502:66051718:-	0	-
#Deleted in new
chr9	66051502	66051754	ENSG00000274628.4|AL669942.1|lncRNA|chr9:66051502:66051754:-	0	-
#Deleted in new
chr9	66051502	66055006	ENSG00000274628.4|AL669942.1|lncRNA|chr9:66051502:66055006:-	0	-
#Deleted in new
chr9	66052219	66052299	ENSG00000274628.4|AL669942.1|lncRNA|chr9:66052219:66052299:-	0	-
#Deleted in new
chr9	66052219	66052734	ENSG00000274628.4|AL669942.1|lncRNA|chr9:66052219:66052734:-	0	-
#Deleted in new
chr9	66151583	66151809	ENSG00000276203.4|ANKRD20A3|pc|chr9:66151583:66151809:-	0	-
#Partially deleted in new
chr9	66152651	66153094	ENSG00000276203.4|ANKRD20A3|pc|chr9:66152651:66153094:-	0	-
#Partially deleted in new
chr9	66152651	66153118	ENSG00000276203.4|ANKRD20A3|pc|chr9:66152651:66153118:-	0	-
#Partially deleted in new
chr9	66152651	66153135	ENSG00000276203.4|ANKRD20A3|pc|chr9:66152651:66153135:-	0	-
#Deleted in new
chr9	66164294	66164440	ENSG00000278849.1|AL513478.2|lncRNA|chr9:66164294:66164440:-	0	-
#Partially deleted in new
chr9	66164523	66164989	ENSG00000278849.1|AL513478.2|lncRNA|chr9:66164523:66164989:-	0	-
#Deleted in new
chr9	66164565	66164904	ENSG00000278849.1|AL513478.2|lncRNA|chr9:66164565:66164904:-	0	-
#Deleted in new
chr9	66179285	66179430	ENSG00000278849.1|AL513478.2|lncRNA|chr9:66179285:66179430:-	0	-
#Deleted in new
chr9	6622784	6623002	ENSG00000178445.9|GLDC|pc|chr9:6622784:6623002:-	0	-
#Deleted in new
chr9	6622918	6623082	ENSG00000178445.9|GLDC|pc|chr9:6622918:6623082:-	0	-
#Deleted in new
chr9	6670424	6670635	ENSG00000236924.1|AL162411.1|lncRNA|chr9:6670424:6670635:+	0	+
#Deleted in new
chr9	66856425	66856461	ENSG00000274349.4|ZNF658|pc|chr9:66856425:66856461:+	0	+
#Deleted in new
chr9	66900728	66900836	ENSG00000274349.4|ZNF658|pc|chr9:66900728:66900836:+	0	+
#Deleted in new
chr9	66900736	66900836	ENSG00000274349.4|ZNF658|pc|chr9:66900736:66900836:+	0	+
#Deleted in new
chr9	66900737	66900836	ENSG00000274349.4|ZNF658|pc|chr9:66900737:66900836:+	0	+
#Deleted in new
chr9	66900812	66901079	ENSG00000274349.4|ZNF658|pc|chr9:66900812:66901079:+	0	+
#Deleted in new
chr9	66902908	66903057	ENSG00000274349.4|ZNF658|pc|chr9:66902908:66903057:+	0	+
#Deleted in new
chr9	66903360	66903576	ENSG00000274349.4|ZNF658|pc|chr9:66903360:66903576:+	0	+
#Deleted in new
chr9	66903517	66903576	ENSG00000274349.4|ZNF658|pc|chr9:66903517:66903576:+	0	+
#Duplicated in new
chr9	66917804	66921426	ENSG00000274349.4|ZNF658|pc|chr9:66917804:66921426:+	0	+
#Duplicated in new
chr9	66917804	66921439	ENSG00000274349.4|ZNF658|pc|chr9:66917804:66921439:+	0	+
#Deleted in new
chr9	66924221	66924337	ENSG00000274349.4|ZNF658|pc|chr9:66924221:66924337:+	0	+
#Deleted in new
chr9	66932024	66932141	ENSG00000274349.4|ZNF658|pc|chr9:66932024:66932141:+	0	+
#Deleted in new
chr9	66942702	66943046	ENSG00000277350.1|AL353770.4|lncRNA|chr9:66942702:66943046:+	0	+
#Deleted in new
chr9	66950393	66950456	ENSG00000277350.1|AL353770.4|lncRNA|chr9:66950393:66950456:+	0	+
#Deleted in new
chr9	66951281	66951405	ENSG00000277350.1|AL353770.4|lncRNA|chr9:66951281:66951405:+	0	+
#Deleted in new
chr9	66951281	66952344	ENSG00000277350.1|AL353770.4|lncRNA|chr9:66951281:66952344:+	0	+
#Split in new
chr9	66979131	66979758	ENSG00000276348.1|AL353770.3|lncRNA|chr9:66979131:66979758:+	0	+
#Duplicated in new
chr9	66990444	66990505	ENSG00000275969.2|SPATA31A3|pc|chr9:66990444:66990505:-	0	-
#Deleted in new
chr9	66991073	66991131	ENSG00000275969.2|SPATA31A3|pc|chr9:66991073:66991131:-	0	-
#Deleted in new
chr9	6704470	6704653	ENSG00000229611.1|AL354707.2|lncRNA|chr9:6704470:6704653:+	0	+
#Deleted in new
chr9	6707541	6707780	ENSG00000229611.1|AL354707.2|lncRNA|chr9:6707541:6707780:+	0	+
#Deleted in new
chr9	6716494	6716616	ENSG00000225489.6|AL354707.1|lncRNA|chr9:6716494:6716616:+	0	+
#Deleted in new
chr9	6716547	6716616	ENSG00000225489.6|AL354707.1|lncRNA|chr9:6716547:6716616:+	0	+
#Deleted in new
chr9	6717872	6718981	ENSG00000225489.6|AL354707.1|lncRNA|chr9:6717872:6718981:+	0	+
#Deleted in new
chr9	6718809	6718981	ENSG00000225489.6|AL354707.1|lncRNA|chr9:6718809:6718981:+	0	+
#Deleted in new
chr9	6718964	6718981	ENSG00000225489.6|AL354707.1|lncRNA|chr9:6718964:6718981:+	0	+
#Deleted in new
chr9	6719070	6719154	ENSG00000225489.6|AL354707.1|lncRNA|chr9:6719070:6719154:+	0	+
#Deleted in new
chr9	6719070	6719370	ENSG00000225489.6|AL354707.1|lncRNA|chr9:6719070:6719370:+	0	+
#Deleted in new
chr9	6721096	6721174	ENSG00000225489.6|AL354707.1|lncRNA|chr9:6721096:6721174:+	0	+
#Deleted in new
chr9	6723526	6723630	ENSG00000225489.6|AL354707.1|lncRNA|chr9:6723526:6723630:+	0	+
#Deleted in new
chr9	6726502	6726619	ENSG00000225489.6|AL354707.1|lncRNA|chr9:6726502:6726619:+	0	+
#Deleted in new
chr9	6726945	6727438	ENSG00000225489.6|AL354707.1|lncRNA|chr9:6726945:6727438:+	0	+
#Partially deleted in new
chr9	67512033	67512711	ENSG00000276898.1|BX664730.1|lncRNA|chr9:67512033:67512711:-	0	-
#Deleted in new
chr9	67515271	67515393	ENSG00000276898.1|BX664730.1|lncRNA|chr9:67515271:67515393:-	0	-
#Deleted in new
chr9	677541	677628	ENSG00000227914.3|AL136979.1|lncRNA|chr9:677541:677628:-	0	-
#Partially deleted in new
chr9	67859146	67859629	ENSG00000260691.5|ANKRD20A1|pc|chr9:67859146:67859629:+	0	+
#Partially deleted in new
chr9	67859162	67859629	ENSG00000260691.5|ANKRD20A1|pc|chr9:67859162:67859629:+	0	+
#Partially deleted in new
chr9	67859179	67859629	ENSG00000260691.5|ANKRD20A1|pc|chr9:67859179:67859629:+	0	+
#Deleted in new
chr9	67860470	67860696	ENSG00000260691.5|ANKRD20A1|pc|chr9:67860470:67860696:+	0	+
#Deleted in new
chr9	680856	681046	ENSG00000227914.3|AL136979.1|lncRNA|chr9:680856:681046:-	0	-
#Deleted in new
chr9	6818947	6819079	ENSG00000107077.18|KDM4C|pc|chr9:6818947:6819079:+	0	+
#Deleted in new
chr9	68232002	68232198	ENSG00000196873.15|CBWD3|pc|chr9:68232002:68232198:+	0	+
#Deleted in new
chr9	68232436	68232495	ENSG00000196873.15|CBWD3|pc|chr9:68232436:68232495:+	0	+
#Deleted in new
chr9	68250468	68251656	ENSG00000279706.1|AL353608.4|lncRNA|chr9:68250468:68251656:-	0	-
#Deleted in new
chr9	68253355	68254977	ENSG00000196873.15|CBWD3|pc|chr9:68253355:68254977:+	0	+
#Deleted in new
chr9	68254360	68254977	ENSG00000196873.15|CBWD3|pc|chr9:68254360:68254977:+	0	+
#Partially deleted in new
chr9	68270301	68270385	ENSG00000196873.15|CBWD3|pc|chr9:68270301:68270385:+	0	+
#Deleted in new
chr9	68272991	68273197	ENSG00000196873.15|CBWD3|pc|chr9:68272991:68273197:+	0	+
#Deleted in new
chr9	68306527	68307101	ENSG00000234394.8|AL353608.3|lncRNA|chr9:68306527:68307101:+	0	+
#Deleted in new
chr9	68307392	68307454	ENSG00000225337.1|AL353608.1|lncRNA|chr9:68307392:68307454:+	0	+
#Deleted in new
chr9	68322410	68322946	ENSG00000234394.8|AL353608.3|lncRNA|chr9:68322410:68322946:+	0	+
#Deleted in new
chr9	68323026	68323825	ENSG00000234394.8|AL353608.3|lncRNA|chr9:68323026:68323825:+	0	+
#Deleted in new
chr9	68323606	68323825	ENSG00000234394.8|AL353608.3|lncRNA|chr9:68323606:68323825:+	0	+
#Deleted in new
chr9	68323677	68323825	ENSG00000234394.8|AL353608.3|lncRNA|chr9:68323677:68323825:+	0	+
#Deleted in new
chr9	68325033	68325257	ENSG00000234394.8|AL353608.3|lncRNA|chr9:68325033:68325257:+	0	+
#Deleted in new
chr9	68326262	68326954	ENSG00000234394.8|AL353608.3|lncRNA|chr9:68326262:68326954:+	0	+
#Deleted in new
chr9	68326262	68328690	ENSG00000234394.8|AL353608.3|lncRNA|chr9:68326262:68328690:+	0	+
#Deleted in new
chr9	68328307	68328690	ENSG00000154330.12|PGM5|pc|chr9:68328307:68328690:+	0	+
#Deleted in new
chr9	68328579	68328690	ENSG00000234394.8|AL353608.3|lncRNA|chr9:68328579:68328690:+	0	+
#Deleted in new
chr9	68328888	68328957	ENSG00000154330.12|PGM5|pc|chr9:68328888:68328957:+	0	+
#Deleted in new
chr9	68328888	68328957	ENSG00000234394.8|AL353608.3|lncRNA|chr9:68328888:68328957:+	0	+
#Deleted in new
chr9	68339262	68339339	ENSG00000154330.12|PGM5|pc|chr9:68339262:68339339:+	0	+
#Deleted in new
chr9	68355188	68355605	ENSG00000224958.5|PGM5-AS1|lncRNA|chr9:68355188:68355605:-	0	-
#Deleted in new
chr9	68393880	68394439	ENSG00000233178.7|AL161457.2|lncRNA|chr9:68393880:68394439:-	0	-
#Deleted in new
chr9	68393882	68394439	ENSG00000233178.7|AL161457.2|lncRNA|chr9:68393882:68394439:-	0	-
#Deleted in new
chr9	68399082	68399149	ENSG00000233178.7|AL161457.2|lncRNA|chr9:68399082:68399149:-	0	-
#Deleted in new
chr9	68399082	68399153	ENSG00000233178.7|AL161457.2|lncRNA|chr9:68399082:68399153:-	0	-
#Deleted in new
chr9	68399082	68399271	ENSG00000233178.7|AL161457.2|lncRNA|chr9:68399082:68399271:-	0	-
#Deleted in new
chr9	68405723	68406008	ENSG00000233178.7|AL161457.2|lncRNA|chr9:68405723:68406008:-	0	-
#Deleted in new
chr9	68406254	68406344	ENSG00000154330.12|PGM5|pc|chr9:68406254:68406344:+	0	+
#Deleted in new
chr9	68406254	68406345	ENSG00000154330.12|PGM5|pc|chr9:68406254:68406345:+	0	+
#Deleted in new
chr9	68406302	68406446	ENSG00000233178.7|AL161457.2|lncRNA|chr9:68406302:68406446:-	0	-
#Deleted in new
chr9	68406302	68406454	ENSG00000233178.7|AL161457.2|lncRNA|chr9:68406302:68406454:-	0	-
#Deleted in new
chr9	68406302	68406500	ENSG00000233178.7|AL161457.2|lncRNA|chr9:68406302:68406500:-	0	-
#Deleted in new
chr9	68466161	68466555	ENSG00000154330.12|PGM5|pc|chr9:68466161:68466555:+	0	+
#Deleted in new
chr9	68542377	68542642	ENSG00000226337.3|AL353616.2|lncRNA|chr9:68542377:68542642:+	0	+
#Deleted in new
chr9	68543540	68543603	ENSG00000234506.5|LINC01506|lncRNA|chr9:68543540:68543603:-	0	-
#Deleted in new
chr9	68545500	68545624	ENSG00000234506.5|LINC01506|lncRNA|chr9:68545500:68545624:-	0	-
#Deleted in new
chr9	68545716	68545836	ENSG00000234506.5|LINC01506|lncRNA|chr9:68545716:68545836:-	0	-
#Deleted in new
chr9	68545928	68546116	ENSG00000234506.5|LINC01506|lncRNA|chr9:68545928:68546116:-	0	-
#Partially deleted in new
chr9	68625640	68625847	ENSG00000226337.3|AL353616.2|lncRNA|chr9:68625640:68625847:+	0	+
#Deleted in new
chr9	68633038	68633260	ENSG00000226337.3|AL353616.2|lncRNA|chr9:68633038:68633260:+	0	+
#Deleted in new
chr9	68643592	68644442	ENSG00000226337.3|AL353616.2|lncRNA|chr9:68643592:68644442:+	0	+
#Deleted in new
chr9	68728764	68728934	ENSG00000107242.17|PIP5K1B|pc|chr9:68728764:68728934:+	0	+
#Deleted in new
chr9	68741583	68741645	ENSG00000107242.17|PIP5K1B|pc|chr9:68741583:68741645:+	0	+
#Deleted in new
chr9	68963182	68963321	ENSG00000107242.17|PIP5K1B|pc|chr9:68963182:68963321:+	0	+
#Deleted in new
chr9	68965588	68965648	ENSG00000107242.17|PIP5K1B|pc|chr9:68965588:68965648:+	0	+
#Deleted in new
chr9	68966506	68966730	ENSG00000107242.17|PIP5K1B|pc|chr9:68966506:68966730:+	0	+
#Deleted in new
chr9	6902669	6902752	ENSG00000224972.1|AL513412.1|lncRNA|chr9:6902669:6902752:+	0	+
#Deleted in new
chr9	69035258	69035947	ENSG00000165060.11|FXN|pc|chr9:69035258:69035947:+	0	+
#Deleted in new
chr9	69035562	69035947	ENSG00000165060.11|FXN|pc|chr9:69035562:69035947:+	0	+
#Deleted in new
chr9	69035761	69035947	ENSG00000165060.11|FXN|pc|chr9:69035761:69035947:+	0	+
#Deleted in new
chr9	69036160	69036205	ENSG00000165060.11|FXN|pc|chr9:69036160:69036205:+	0	+
#Deleted in new
chr9	6925500	6925671	ENSG00000107077.18|KDM4C|pc|chr9:6925500:6925671:+	0	+
#Deleted in new
chr9	69304935	69305077	ENSG00000278910.3|BANCR|lncRNA|chr9:69304935:69305077:-	0	-
#Deleted in new
chr9	69306147	69306295	ENSG00000278910.3|BANCR|lncRNA|chr9:69306147:69306295:-	0	-
#Deleted in new
chr9	69306853	69306977	ENSG00000278910.3|BANCR|lncRNA|chr9:69306853:69306977:-	0	-
#Partially deleted in new
chr9	69329324	69329699	ENSG00000135063.17|FAM189A2|pc|chr9:69329324:69329699:+	0	+
#Deleted in new
chr9	6941585	6941815	ENSG00000107077.18|KDM4C|pc|chr9:6941585:6941815:+	0	+
#Deleted in new
chr9	6942459	6942634	ENSG00000107077.18|KDM4C|pc|chr9:6942459:6942634:+	0	+
#Deleted in new
chr9	6948032	6948214	ENSG00000107077.18|KDM4C|pc|chr9:6948032:6948214:+	0	+
#Deleted in new
chr9	6973826	6973887	ENSG00000224972.1|AL513412.1|lncRNA|chr9:6973826:6973887:+	0	+
#Deleted in new
chr9	6974765	6974939	ENSG00000224972.1|AL513412.1|lncRNA|chr9:6974765:6974939:+	0	+
#Deleted in new
chr9	6978624	6978859	ENSG00000224972.1|AL513412.1|lncRNA|chr9:6978624:6978859:+	0	+
#Deleted in new
chr9	69885052	69885122	ENSG00000204711.8|C9orf135|pc|chr9:69885052:69885122:+	0	+
#Partially deleted in new
chr9	70033920	70034199	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70033920:70034199:-	0	-
#Deleted in new
chr9	70034087	70034199	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70034087:70034199:-	0	-
#Deleted in new
chr9	70060556	70060612	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70060556:70060612:-	0	-
#Partially deleted in new
chr9	70062534	70062745	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70062534:70062745:-	0	-
#Partially deleted in new
chr9	70062579	70062745	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70062579:70062745:-	0	-
#Deleted in new
chr9	70062879	70063245	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70062879:70063245:-	0	-
#Deleted in new
chr9	70088318	70088424	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70088318:70088424:-	0	-
#Deleted in new
chr9	70088318	70088494	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70088318:70088494:-	0	-
#Partially deleted in new
chr9	70088318	70089236	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70088318:70089236:-	0	-
#Deleted in new
chr9	70090605	70090790	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70090605:70090790:-	0	-
#Deleted in new
chr9	70147980	70148078	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70147980:70148078:-	0	-
#Deleted in new
chr9	70157511	70157540	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70157511:70157540:-	0	-
#Deleted in new
chr9	70157511	70157742	ENSG00000204706.14|MAMDC2-AS1|lncRNA|chr9:70157511:70157742:-	0	-
#Deleted in new
chr9	70216285	70216421	ENSG00000268364.1|SMC5-AS1|lncRNA|chr9:70216285:70216421:-	0	-
#Partially deleted in new
chr9	70257914	70258866	ENSG00000268364.1|SMC5-AS1|lncRNA|chr9:70257914:70258866:-	0	-
#Deleted in new
chr9	70286745	70286784	ENSG00000198887.8|SMC5|pc|chr9:70286745:70286784:+	0	+
#Deleted in new
chr9	70310874	70312120	ENSG00000274421.1|AL162390.1|lncRNA|chr9:70310874:70312120:+	0	+
#Deleted in new
chr9	70726039	70726225	ENSG00000223966.1|AL159990.1|lncRNA|chr9:70726039:70726225:+	0	+
#Deleted in new
chr9	7076433	7077263	ENSG00000107077.18|KDM4C|pc|chr9:7076433:7077263:+	0	+
#Partially deleted in new
chr9	70774087	70776487	ENSG00000083067.22|TRPM3|pc|chr9:70774087:70776487:-	0	-
#Deleted in new
chr9	71918424	71918555	ENSG00000155621.14|C9orf85|pc|chr9:71918424:71918555:+	0	+
#Deleted in new
chr9	71941804	71941934	ENSG00000155621.14|C9orf85|pc|chr9:71941804:71941934:+	0	+
#Split in new
chr9	71972691	71973152	ENSG00000155621.14|C9orf85|pc|chr9:71972691:71973152:+	0	+
#Deleted in new
chr9	71982656	71983250	ENSG00000155621.14|C9orf85|pc|chr9:71982656:71983250:+	0	+
#Deleted in new
chr9	72072660	72072721	ENSG00000204669.9|C9orf57|pc|chr9:72072660:72072721:-	0	-
#Deleted in new
chr9	72114594	72114833	ENSG00000119125.16|GDA|pc|chr9:72114594:72114833:+	0	+
#Deleted in new
chr9	72193821	72194158	ENSG00000119125.16|GDA|pc|chr9:72193821:72194158:+	0	+
#Deleted in new
chr9	72197461	72197559	ENSG00000119125.16|GDA|pc|chr9:72197461:72197559:+	0	+
#Deleted in new
chr9	72214758	72214876	ENSG00000119125.16|GDA|pc|chr9:72214758:72214876:+	0	+
#Deleted in new
chr9	72256991	72257193	ENSG00000119125.16|GDA|pc|chr9:72256991:72257193:+	0	+
#Deleted in new
chr9	72257335	72257405	ENSG00000235523.1|AL135924.2|lncRNA|chr9:72257335:72257405:+	0	+
#Deleted in new
chr9	72257492	72257783	ENSG00000235523.1|AL135924.2|lncRNA|chr9:72257492:72257783:+	0	+
#Deleted in new
chr9	72305429	72305625	ENSG00000225434.2|LINC01504|lncRNA|chr9:72305429:72305625:+	0	+
#Deleted in new
chr9	72305435	72305625	ENSG00000225434.2|LINC01504|lncRNA|chr9:72305435:72305625:+	0	+
#Deleted in new
chr9	72305516	72305625	ENSG00000225434.2|LINC01504|lncRNA|chr9:72305516:72305625:+	0	+
#Deleted in new
chr9	72328663	72328721	ENSG00000225434.2|LINC01504|lncRNA|chr9:72328663:72328721:+	0	+
#Deleted in new
chr9	72335391	72335497	ENSG00000225434.2|LINC01504|lncRNA|chr9:72335391:72335497:+	0	+
#Deleted in new
chr9	72521800	72521913	ENSG00000165091.15|TMC1|pc|chr9:72521800:72521913:+	0	+
#Partially deleted in new
chr9	72577787	72578023	ENSG00000165091.15|TMC1|pc|chr9:72577787:72578023:+	0	+
#Partially deleted in new
chr9	72577901	72578023	ENSG00000165091.15|TMC1|pc|chr9:72577901:72578023:+	0	+
#Deleted in new
chr9	72616265	72616477	ENSG00000165091.15|TMC1|pc|chr9:72616265:72616477:+	0	+
#Deleted in new
chr9	72616367	72616477	ENSG00000165091.15|TMC1|pc|chr9:72616367:72616477:+	0	+
#Deleted in new
chr9	72651163	72651618	ENSG00000165091.15|TMC1|pc|chr9:72651163:72651618:+	0	+
#Deleted in new
chr9	72873026	72873155	ENSG00000236849.5|LINC01474|lncRNA|chr9:72873026:72873155:-	0	-
#Deleted in new
chr9	72874015	72874068	ENSG00000236849.5|LINC01474|lncRNA|chr9:72874015:72874068:-	0	-
#Deleted in new
chr9	72874015	72874098	ENSG00000236849.5|LINC01474|lncRNA|chr9:72874015:72874098:-	0	-
#Deleted in new
chr9	72874067	72874109	ENSG00000236849.5|LINC01474|lncRNA|chr9:72874067:72874109:-	0	-
#Deleted in new
chr9	73054054	73054234	ENSG00000165092.12|ALDH1A1|pc|chr9:73054054:73054234:-	0	-
#Deleted in new
chr9	73080366	73080395	ENSG00000165092.12|ALDH1A1|pc|chr9:73080366:73080395:-	0	-
#Deleted in new
chr9	73080366	73080442	ENSG00000165092.12|ALDH1A1|pc|chr9:73080366:73080442:-	0	-
#Deleted in new
chr9	735711	735780	ENSG00000107104.18|KANK1|pc|chr9:735711:735780:+	0	+
#Deleted in new
chr9	74485550	74485680	ENSG00000224825.2|RORB-AS1|lncRNA|chr9:74485550:74485680:-	0	-
#Deleted in new
chr9	74881	75293	ENSG00000277631.4|PGM5P3-AS1|lncRNA|chr9:74881:75293:+	0	+
#Deleted in new
chr9	74881	75327	ENSG00000277631.4|PGM5P3-AS1|lncRNA|chr9:74881:75327:+	0	+
#Partially deleted in new
chr9	74952967	74953117	ENSG00000203321.2|C9orf41-AS1|lncRNA|chr9:74952967:74953117:+	0	+
#Deleted in new
chr9	74975861	74975959	ENSG00000203321.2|C9orf41-AS1|lncRNA|chr9:74975861:74975959:+	0	+
#Deleted in new
chr9	74991164	74991285	ENSG00000203321.2|C9orf41-AS1|lncRNA|chr9:74991164:74991285:+	0	+
#Deleted in new
chr9	74991620	74991674	ENSG00000203321.2|C9orf41-AS1|lncRNA|chr9:74991620:74991674:+	0	+
#Deleted in new
chr9	75009827	75010205	ENSG00000229587.2|AL158825.2|lncRNA|chr9:75009827:75010205:-	0	-
#Deleted in new
chr9	75579668	75579806	ENSG00000236376.1|AL353780.1|lncRNA|chr9:75579668:75579806:+	0	+
#Deleted in new
chr9	75588228	75588548	ENSG00000236376.1|AL353780.1|lncRNA|chr9:75588228:75588548:+	0	+
#Deleted in new
chr9	76388182	76388286	ENSG00000135002.11|RFK|pc|chr9:76388182:76388286:-	0	-
#Deleted in new
chr9	76441665	76442315	ENSG00000187210.12|GCNT1|pc|chr9:76441665:76442315:+	0	+
#Deleted in new
chr9	76460059	76460177	ENSG00000187210.12|GCNT1|pc|chr9:76460059:76460177:+	0	+
#Deleted in new
chr9	76782667	76782832	ENSG00000225937.1|PCA3|lncRNA|chr9:76782667:76782832:+	0	+
#Deleted in new
chr9	76783704	76783887	ENSG00000225937.1|PCA3|lncRNA|chr9:76783704:76783887:+	0	+
#Deleted in new
chr9	77211212	77211617	ENSG00000197969.11|VPS13A|pc|chr9:77211212:77211617:+	0	+
#Deleted in new
chr9	77517442	77517544	ENSG00000231373.1|GNA14-AS1|lncRNA|chr9:77517442:77517544:+	0	+
#Deleted in new
chr9	77518021	77518099	ENSG00000231373.1|GNA14-AS1|lncRNA|chr9:77518021:77518099:+	0	+
#Deleted in new
chr9	7786104	7786688	ENSG00000273056.1|AL354694.1|lncRNA|chr9:7786104:7786688:-	0	-
#Partially deleted in new
chr9	78248761	78250453	ENSG00000148019.12|CEP78|pc|chr9:78248761:78250453:+	0	+
#Deleted in new
chr9	78270840	78271137	ENSG00000148019.12|CEP78|pc|chr9:78270840:78271137:+	0	+
#Deleted in new
chr9	78270840	78271883	ENSG00000148019.12|CEP78|pc|chr9:78270840:78271883:+	0	+
#Partially deleted in new
chr9	78270840	78279690	ENSG00000148019.12|CEP78|pc|chr9:78270840:78279690:+	0	+
#Deleted in new
chr9	7888298	7888380	ENSG00000137038.7|DMAC1|pc|chr9:7888298:7888380:-	0	-
#Deleted in new
chr9	79138522	79138710	ENSG00000260995.1|AL512634.1|lncRNA|chr9:79138522:79138710:-	0	-
#Deleted in new
chr9	79138787	79139042	ENSG00000260995.1|AL512634.1|lncRNA|chr9:79138787:79139042:-	0	-
#Deleted in new
chr9	79145496	79145674	ENSG00000260995.1|AL512634.1|lncRNA|chr9:79145496:79145674:-	0	-
#Deleted in new
chr9	7932084	7932170	ENSG00000226376.1|AL135923.1|lncRNA|chr9:7932084:7932170:-	0	-
#Deleted in new
chr9	79517952	79518448	ENSG00000233086.7|AL358975.1|lncRNA|chr9:79517952:79518448:-	0	-
#Deleted in new
chr9	79527609	79527864	ENSG00000233086.7|AL358975.1|lncRNA|chr9:79527609:79527864:-	0	-
#Deleted in new
chr9	79601414	79601509	ENSG00000106829.18|TLE4|pc|chr9:79601414:79601509:+	0	+
#Deleted in new
chr9	79649480	79649724	ENSG00000106829.18|TLE4|pc|chr9:79649480:79649724:+	0	+
#Deleted in new
chr9	79649819	79649858	ENSG00000106829.18|TLE4|pc|chr9:79649819:79649858:+	0	+
#Deleted in new
chr9	79886564	79886678	ENSG00000232494.1|AL161912.1|lncRNA|chr9:79886564:79886678:-	0	-
#Deleted in new
chr9	80030578	80030769	ENSG00000230945.1|LINC01507|lncRNA|chr9:80030578:80030769:+	0	+
#Deleted in new
chr9	80034300	80034555	ENSG00000230945.1|LINC01507|lncRNA|chr9:80034300:80034555:+	0	+
#Deleted in new
chr9	80650	80807	ENSG00000277631.4|PGM5P3-AS1|lncRNA|chr9:80650:80807:+	0	+
#Deleted in new
chr9	80871172	80871295	ENSG00000226798.1|AL138749.1|lncRNA|chr9:80871172:80871295:-	0	-
#Deleted in new
chr9	81599864	81600116	ENSG00000196781.14|TLE1|pc|chr9:81599864:81600116:-	0	-
#Deleted in new
chr9	81749685	81749812	ENSG00000233926.1|AL591368.1|lncRNA|chr9:81749685:81749812:+	0	+
#Deleted in new
chr9	81755041	81755452	ENSG00000233926.1|AL591368.1|lncRNA|chr9:81755041:81755452:+	0	+
#Deleted in new
chr9	81775937	81776900	ENSG00000233926.1|AL591368.1|lncRNA|chr9:81775937:81776900:+	0	+
#Deleted in new
chr9	81930099	81930160	ENSG00000189357.8|SPATA31D4|pc|chr9:81930099:81930160:+	0	+
#Deleted in new
chr9	81973940	81974247	ENSG00000267559.5|AL158154.2|lncRNA|chr9:81973940:81974247:-	0	-
#Deleted in new
chr9	81974081	81974247	ENSG00000267559.5|AL158154.2|lncRNA|chr9:81974081:81974247:-	0	-
#Deleted in new
chr9	81976607	81976806	ENSG00000267559.5|AL158154.2|lncRNA|chr9:81976607:81976806:-	0	-
#Deleted in new
chr9	81976607	81977089	ENSG00000267559.5|AL158154.2|lncRNA|chr9:81976607:81977089:-	0	-
#Deleted in new
chr9	82405187	82405310	ENSG00000225085.1|AL162726.1|lncRNA|chr9:82405187:82405310:+	0	+
#Deleted in new
chr9	82405907	82406239	ENSG00000225085.1|AL162726.1|lncRNA|chr9:82405907:82406239:+	0	+
#Deleted in new
chr9	82451655	82451729	ENSG00000232749.2|AL162726.4|lncRNA|chr9:82451655:82451729:+	0	+
#Deleted in new
chr9	82454906	82455225	ENSG00000232749.2|AL162726.4|lncRNA|chr9:82454906:82455225:+	0	+
#Deleted in new
chr9	83054659	83055683	ENSG00000165105.9|RASEF|pc|chr9:83054659:83055683:-	0	-
#Deleted in new
chr9	83219330	83219377	ENSG00000229109.1|AL137847.1|lncRNA|chr9:83219330:83219377:+	0	+
#Deleted in new
chr9	83233715	83233919	ENSG00000229109.1|AL137847.1|lncRNA|chr9:83233715:83233919:+	0	+
#Deleted in new
chr9	83234049	83234242	ENSG00000229109.1|AL137847.1|lncRNA|chr9:83234049:83234242:+	0	+
#Deleted in new
chr9	83279156	83279499	ENSG00000237529.1|AL137847.2|lncRNA|chr9:83279156:83279499:+	0	+
#Deleted in new
chr9	83281549	83281608	ENSG00000172159.15|FRMD3|pc|chr9:83281549:83281608:-	0	-
#Deleted in new
chr9	83331851	83331961	ENSG00000172159.15|FRMD3|pc|chr9:83331851:83331961:-	0	-
#Deleted in new
chr9	83467617	83467742	ENSG00000172159.15|FRMD3|pc|chr9:83467617:83467742:-	0	-
#Deleted in new
chr9	83626441	83627044	ENSG00000148057.15|IDNK|pc|chr9:83626441:83627044:+	0	+
#Deleted in new
chr9	83712497	83712869	ENSG00000254473.1|AL354920.1|lncRNA|chr9:83712497:83712869:+	0	+
#Deleted in new
chr9	83712497	83713378	ENSG00000254473.1|AL354920.1|lncRNA|chr9:83712497:83713378:+	0	+
#Deleted in new
chr9	83792950	83793017	ENSG00000165113.12|GKAP1|pc|chr9:83792950:83793017:-	0	-
#Deleted in new
chr9	83829060	83829135	ENSG00000165113.12|GKAP1|pc|chr9:83829060:83829135:-	0	-
#Deleted in new
chr9	83835550	83835705	ENSG00000226877.7|AL354733.1|lncRNA|chr9:83835550:83835705:+	0	+
#Deleted in new
chr9	83835550	83835705	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83835550:83835705:+	0	+
#Deleted in new
chr9	83838743	83838809	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83838743:83838809:+	0	+
#Deleted in new
chr9	83847562	83847908	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83847562:83847908:+	0	+
#Deleted in new
chr9	83847657	83847908	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83847657:83847908:+	0	+
#Deleted in new
chr9	83848646	83848700	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83848646:83848700:+	0	+
#Deleted in new
chr9	83848807	83848955	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83848807:83848955:+	0	+
#Deleted in new
chr9	83848809	83848955	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83848809:83848955:+	0	+
#Deleted in new
chr9	83848833	83848955	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83848833:83848955:+	0	+
#Deleted in new
chr9	83848837	83848955	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83848837:83848955:+	0	+
#Deleted in new
chr9	83848846	83848955	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83848846:83848955:+	0	+
#Deleted in new
chr9	83848885	83848955	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83848885:83848955:+	0	+
#Deleted in new
chr9	83848909	83848955	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83848909:83848955:+	0	+
#Deleted in new
chr9	83855055	83855177	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83855055:83855177:+	0	+
#Deleted in new
chr9	83859576	83859674	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83859576:83859674:+	0	+
#Deleted in new
chr9	83859576	83859880	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83859576:83859880:+	0	+
#Partially deleted in new
chr9	83859576	83860098	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83859576:83860098:+	0	+
#Deleted in new
chr9	83863660	83863822	ENSG00000231616.8|AL354733.2|lncRNA|chr9:83863660:83863822:+	0	+
#Deleted in new
chr9	83898695	83898948	ENSG00000165115.14|KIF27|pc|chr9:83898695:83898948:-	0	-
#Deleted in new
chr9	83953647	83953843	ENSG00000165118.14|C9orf64|pc|chr9:83953647:83953843:-	0	-
#Deleted in new
chr9	83956896	83956986	ENSG00000165118.14|C9orf64|pc|chr9:83956896:83956986:-	0	-
#Deleted in new
chr9	84063442	84063529	ENSG00000227463.2|AL390838.1|lncRNA|chr9:84063442:84063529:+	0	+
#Deleted in new
chr9	84075427	84075848	ENSG00000227463.2|AL390838.1|lncRNA|chr9:84075427:84075848:+	0	+
#Deleted in new
chr9	84081937	84082009	ENSG00000227463.2|AL390838.1|lncRNA|chr9:84081937:84082009:+	0	+
#Deleted in new
chr9	84083951	84084401	ENSG00000227463.2|AL390838.1|lncRNA|chr9:84083951:84084401:+	0	+
#Deleted in new
chr9	84094340	84094577	ENSG00000227463.2|AL390838.1|lncRNA|chr9:84094340:84094577:+	0	+
#Partially deleted in new
chr9	84275456	84278344	ENSG00000197506.7|SLC28A3|pc|chr9:84275456:84278344:-	0	-
#Deleted in new
chr9	85553872	85554272	ENSG00000135049.15|AGTPBP1|pc|chr9:85553872:85554272:-	0	-
#Deleted in new
chr9	85787883	85788038	ENSG00000230303.5|AL353743.2|lncRNA|chr9:85787883:85788038:-	0	-
#Deleted in new
chr9	85966595	85966672	ENSG00000135040.15|NAA35|pc|chr9:85966595:85966672:+	0	+
#Deleted in new
chr9	85986472	85987041	ENSG00000135040.15|NAA35|pc|chr9:85986472:85987041:+	0	+
#Deleted in new
chr9	86077884	86078012	ENSG00000135052.16|GOLM1|pc|chr9:86077884:86078012:-	0	-
#Deleted in new
chr9	86084919	86085039	ENSG00000135052.16|GOLM1|pc|chr9:86084919:86085039:-	0	-
#Deleted in new
chr9	86099410	86099558	ENSG00000135052.16|GOLM1|pc|chr9:86099410:86099558:-	0	-
#Deleted in new
chr9	86100024	86100149	ENSG00000135052.16|GOLM1|pc|chr9:86100024:86100149:-	0	-
#Deleted in new
chr9	86100024	86100173	ENSG00000135052.16|GOLM1|pc|chr9:86100024:86100173:-	0	-
#Partially deleted in new
chr9	86220264	86221733	ENSG00000187753.12|C9orf153|pc|chr9:86220264:86221733:-	0	-
#Partially deleted in new
chr9	86227310	86227396	ENSG00000187753.12|C9orf153|pc|chr9:86227310:86227396:-	0	-
#Partially deleted in new
chr9	86227332	86227396	ENSG00000187753.12|C9orf153|pc|chr9:86227332:86227396:-	0	-
#Deleted in new
chr9	86229537	86229629	ENSG00000187753.12|C9orf153|pc|chr9:86229537:86229629:-	0	-
#Deleted in new
chr9	86229537	86229630	ENSG00000187753.12|C9orf153|pc|chr9:86229537:86229630:-	0	-
#Deleted in new
chr9	86266862	86267805	ENSG00000135070.14|ISCA1|pc|chr9:86266862:86267805:-	0	-
#Deleted in new
chr9	86281968	86282108	ENSG00000135070.14|ISCA1|pc|chr9:86281968:86282108:-	0	-
#Deleted in new
chr9	86282901	86283102	ENSG00000135070.14|ISCA1|pc|chr9:86282901:86283102:-	0	-
#Deleted in new
chr9	86414437	86414570	ENSG00000235819.1|AL158828.1|lncRNA|chr9:86414437:86414570:+	0	+
#Deleted in new
chr9	86660012	86660056	ENSG00000232211.1|AL353613.1|lncRNA|chr9:86660012:86660056:+	0	+
#Deleted in new
chr9	86696132	86696496	ENSG00000232211.1|AL353613.1|lncRNA|chr9:86696132:86696496:+	0	+
#Deleted in new
chr9	86950866	86950999	ENSG00000226237.1|GAS1RR|lncRNA|chr9:86950866:86950999:+	0	+
#Deleted in new
chr9	86981769	86981925	ENSG00000226237.1|GAS1RR|lncRNA|chr9:86981769:86981925:+	0	+
#Deleted in new
chr9	86987447	86987615	ENSG00000226237.1|GAS1RR|lncRNA|chr9:86987447:86987615:+	0	+
#Deleted in new
chr9	86988801	86988906	ENSG00000226237.1|GAS1RR|lncRNA|chr9:86988801:86988906:+	0	+
#Partially deleted in new
chr9	86998593	87002033	ENSG00000226237.1|GAS1RR|lncRNA|chr9:86998593:87002033:+	0	+
#Partially deleted in new
chr9	87008454	87010210	ENSG00000269994.1|AL513318.2|lncRNA|chr9:87008454:87010210:-	0	-
#Deleted in new
chr9	8701374	8701552	ENSG00000235389.2|AL583805.2|lncRNA|chr9:8701374:8701552:-	0	-
#Deleted in new
chr9	87041870	87042126	ENSG00000269994.1|AL513318.2|lncRNA|chr9:87041870:87042126:-	0	-
#Partially deleted in new
chr9	87156572	87159556	ENSG00000204446.4|C9orf170|lncRNA|chr9:87156572:87159556:+	0	+
#Partially deleted in new
chr9	87497880	87498107	ENSG00000196730.12|DAPK1|pc|chr9:87497880:87498107:+	0	+
#Partially deleted in new
chr9	87497911	87498107	ENSG00000196730.12|DAPK1|pc|chr9:87497911:87498107:+	0	+
#Partially deleted in new
chr9	87498534	87498636	ENSG00000196730.12|DAPK1|pc|chr9:87498534:87498636:+	0	+
#Deleted in new
chr9	87553453	87553590	ENSG00000236709.1|DAPK1-IT1|lncRNA|chr9:87553453:87553590:+	0	+
#Deleted in new
chr9	87848112	87848698	ENSG00000233884.1|AL772337.2|lncRNA|chr9:87848112:87848698:-	0	-
#Deleted in new
chr9	87849575	87849681	ENSG00000233884.1|AL772337.2|lncRNA|chr9:87849575:87849681:-	0	-
#Deleted in new
chr9	87852890	87853028	ENSG00000233884.1|AL772337.2|lncRNA|chr9:87852890:87853028:-	0	-
#Deleted in new
chr9	87853291	87853442	ENSG00000233884.1|AL772337.2|lncRNA|chr9:87853291:87853442:-	0	-
#Deleted in new
chr9	87857014	87858171	ENSG00000214888.2|AL772337.1|lncRNA|chr9:87857014:87858171:-	0	-
#Deleted in new
chr9	87858542	87859399	ENSG00000214888.2|AL772337.1|lncRNA|chr9:87858542:87859399:-	0	-
#Deleted in new
chr9	88177694	88178578	ENSG00000279154.1|AL353726.2|lncRNA|chr9:88177694:88178578:+	0	+
#Deleted in new
chr9	88415606	88415699	ENSG00000106723.16|SPIN1|pc|chr9:88415606:88415699:+	0	+
#Deleted in new
chr9	88416643	88416766	ENSG00000106723.16|SPIN1|pc|chr9:88416643:88416766:+	0	+
#Deleted in new
chr9	88418777	88418951	ENSG00000106723.16|SPIN1|pc|chr9:88418777:88418951:+	0	+
#Deleted in new
chr9	88418849	88418951	ENSG00000106723.16|SPIN1|pc|chr9:88418849:88418951:+	0	+
#Deleted in new
chr9	88538387	88538392	ENSG00000130045.15|NXNL2|pc|chr9:88538387:88538392:+	0	+
#Deleted in new
chr9	88539713	88539811	ENSG00000130045.15|NXNL2|pc|chr9:88539713:88539811:+	0	+
#Deleted in new
chr9	88571086	88571208	ENSG00000130045.15|NXNL2|pc|chr9:88571086:88571208:+	0	+
#Deleted in new
chr9	88575086	88575789	ENSG00000130045.15|NXNL2|pc|chr9:88575086:88575789:+	0	+
#Deleted in new
chr9	88583998	88584274	ENSG00000130045.15|NXNL2|pc|chr9:88583998:88584274:+	0	+
#Deleted in new
chr9	88627188	88627402	ENSG00000228189.4|AL592486.1|lncRNA|chr9:88627188:88627402:-	0	-
#Deleted in new
chr9	88628256	88628346	ENSG00000228189.4|AL592486.1|lncRNA|chr9:88628256:88628346:-	0	-
#Deleted in new
chr9	88646920	88647660	ENSG00000228189.4|AL592486.1|lncRNA|chr9:88646920:88647660:-	0	-
#Deleted in new
chr9	88647178	88647660	ENSG00000228189.4|AL592486.1|lncRNA|chr9:88647178:88647660:-	0	-
#Deleted in new
chr9	88971637	88971845	ENSG00000228658.1|AL772202.1|lncRNA|chr9:88971637:88971845:+	0	+
#Deleted in new
chr9	89088603	89088935	ENSG00000224945.1|AL353150.1|lncRNA|chr9:89088603:89088935:-	0	-
#Deleted in new
chr9	89088886	89088935	ENSG00000224945.1|AL353150.1|lncRNA|chr9:89088886:89088935:-	0	-
#Deleted in new
chr9	89109479	89109934	ENSG00000224945.1|AL353150.1|lncRNA|chr9:89109479:89109934:-	0	-
#Partially deleted in new
chr9	89322199	89325676	ENSG00000187742.14|SECISBP2|pc|chr9:89322199:89325676:+	0	+
#Partially deleted in new
chr9	89328659	89330445	ENSG00000187742.14|SECISBP2|pc|chr9:89328659:89330445:+	0	+
#Deleted in new
chr9	8936078	8936179	ENSG00000234021.1|AL596451.1|lncRNA|chr9:8936078:8936179:+	0	+
#Partially deleted in new
chr9	89363429	89365654	ENSG00000187764.11|SEMA4D|pc|chr9:89363429:89365654:-	0	-
#Partially deleted in new
chr9	89367122	89369519	ENSG00000187764.11|SEMA4D|pc|chr9:89367122:89369519:-	0	-
#Deleted in new
chr9	89418055	89418118	ENSG00000187764.11|SEMA4D|pc|chr9:89418055:89418118:-	0	-
#Deleted in new
chr9	89418055	89418233	ENSG00000187764.11|SEMA4D|pc|chr9:89418055:89418233:-	0	-
#Deleted in new
chr9	89418362	89418437	ENSG00000187764.11|SEMA4D|pc|chr9:89418362:89418437:-	0	-
#Deleted in new
chr9	89418362	89418833	ENSG00000187764.11|SEMA4D|pc|chr9:89418362:89418833:-	0	-
#Deleted in new
chr9	89479571	89479890	ENSG00000187764.11|SEMA4D|pc|chr9:89479571:89479890:-	0	-
#Deleted in new
chr9	8958721	8958848	ENSG00000234021.1|AL596451.1|lncRNA|chr9:8958721:8958848:+	0	+
#Deleted in new
chr9	89698032	89698199	ENSG00000237372.2|UNQ6494|lncRNA|chr9:89698032:89698199:+	0	+
#Deleted in new
chr9	89719186	89719670	ENSG00000237372.2|UNQ6494|lncRNA|chr9:89719186:89719670:+	0	+
#Deleted in new
chr9	89719186	89719759	ENSG00000237372.2|UNQ6494|lncRNA|chr9:89719186:89719759:+	0	+
#Deleted in new
chr9	89821250	89821753	ENSG00000226206.1|BX470209.1|lncRNA|chr9:89821250:89821753:+	0	+
#Deleted in new
chr9	89978281	89978432	ENSG00000237626.1|AL161629.1|lncRNA|chr9:89978281:89978432:+	0	+
#Deleted in new
chr9	89987180	89987486	ENSG00000237626.1|AL161629.1|lncRNA|chr9:89987180:89987486:+	0	+
#Deleted in new
chr9	90024562	90026099	ENSG00000227555.1|MIR4290HG|lncRNA|chr9:90024562:90026099:-	0	-
#Deleted in new
chr9	90041292	90041499	ENSG00000227555.1|MIR4290HG|lncRNA|chr9:90041292:90041499:-	0	-
#Deleted in new
chr9	90158027	90158646	ENSG00000279503.1|AL353649.1|lncRNA|chr9:90158027:90158646:+	0	+
#Deleted in new
chr9	90300901	90301653	ENSG00000231107.1|LINC01508|lncRNA|chr9:90300901:90301653:-	0	-
#Deleted in new
chr9	90383519	90383721	ENSG00000231107.1|LINC01508|lncRNA|chr9:90383519:90383721:-	0	-
#Deleted in new
chr9	90383609	90383721	ENSG00000231107.1|LINC01508|lncRNA|chr9:90383609:90383721:-	0	-
#Deleted in new
chr9	90385015	90385583	ENSG00000231107.1|LINC01508|lncRNA|chr9:90385015:90385583:-	0	-
#Deleted in new
chr9	90433430	90433489	ENSG00000231107.1|LINC01508|lncRNA|chr9:90433430:90433489:-	0	-
#Deleted in new
chr9	90433430	90433505	ENSG00000231107.1|LINC01508|lncRNA|chr9:90433430:90433505:-	0	-
#Deleted in new
chr9	90463523	90463802	ENSG00000229613.1|LINC01501|lncRNA|chr9:90463523:90463802:-	0	-
#Deleted in new
chr9	90463658	90463802	ENSG00000229613.1|LINC01501|lncRNA|chr9:90463658:90463802:-	0	-
#Deleted in new
chr9	90466815	90466945	ENSG00000229613.1|LINC01501|lncRNA|chr9:90466815:90466945:-	0	-
#Deleted in new
chr9	90501638	90501784	ENSG00000229613.1|LINC01501|lncRNA|chr9:90501638:90501784:-	0	-
#Deleted in new
chr9	90505722	90505780	ENSG00000229613.1|LINC01501|lncRNA|chr9:90505722:90505780:-	0	-
#Deleted in new
chr9	90507257	90507340	ENSG00000229613.1|LINC01501|lncRNA|chr9:90507257:90507340:-	0	-
#Deleted in new
chr9	90508798	90508941	ENSG00000229613.1|LINC01501|lncRNA|chr9:90508798:90508941:-	0	-
#Deleted in new
chr9	90582527	90582694	ENSG00000229613.1|LINC01501|lncRNA|chr9:90582527:90582694:-	0	-
#Deleted in new
chr9	90582527	90582744	ENSG00000229613.1|LINC01501|lncRNA|chr9:90582527:90582744:-	0	-
#Deleted in new
chr9	90625875	90626175	ENSG00000165023.6|DIRAS2|pc|chr9:90625875:90626175:-	0	-
#Deleted in new
chr9	90626057	90626175	ENSG00000165023.6|DIRAS2|pc|chr9:90626057:90626175:-	0	-
#Deleted in new
chr9	90801786	90801893	ENSG00000165025.14|SYK|pc|chr9:90801786:90801893:+	0	+
#Deleted in new
chr9	90801926	90802005	ENSG00000165025.14|SYK|pc|chr9:90801926:90802005:+	0	+
#Deleted in new
chr9	90801961	90802039	ENSG00000165025.14|SYK|pc|chr9:90801961:90802039:+	0	+
#Deleted in new
chr9	90827487	90827579	ENSG00000165025.14|SYK|pc|chr9:90827487:90827579:+	0	+
#Deleted in new
chr9	90957259	90957424	ENSG00000228216.1|AL355607.1|lncRNA|chr9:90957259:90957424:-	0	-
#Deleted in new
chr9	90965263	90965393	ENSG00000228216.1|AL355607.1|lncRNA|chr9:90965263:90965393:-	0	-
#Deleted in new
chr9	90997053	90997124	ENSG00000260454.1|AL355607.2|lncRNA|chr9:90997053:90997124:+	0	+
#Deleted in new
chr9	90997595	90997817	ENSG00000260454.1|AL355607.2|lncRNA|chr9:90997595:90997817:+	0	+
#Deleted in new
chr9	91104956	91105382	ENSG00000230537.1|AL158071.2|lncRNA|chr9:91104956:91105382:-	0	-
#Deleted in new
chr9	91106464	91106671	ENSG00000230537.1|AL158071.2|lncRNA|chr9:91106464:91106671:-	0	-
#Deleted in new
chr9	91107122	91107304	ENSG00000230537.1|AL158071.2|lncRNA|chr9:91107122:91107304:-	0	-
#Deleted in new
chr9	91159572	91159807	ENSG00000235641.4|LINC00484|lncRNA|chr9:91159572:91159807:+	0	+
#Deleted in new
chr9	91159600	91159807	ENSG00000235641.4|LINC00484|lncRNA|chr9:91159600:91159807:+	0	+
#Deleted in new
chr9	91160355	91160480	ENSG00000235641.4|LINC00484|lncRNA|chr9:91160355:91160480:+	0	+
#Deleted in new
chr9	91162321	91162632	ENSG00000235641.4|LINC00484|lncRNA|chr9:91162321:91162632:+	0	+
#Deleted in new
chr9	91162321	91162705	ENSG00000235641.4|LINC00484|lncRNA|chr9:91162321:91162705:+	0	+
#Deleted in new
chr9	91162497	91163331	ENSG00000235641.4|LINC00484|lncRNA|chr9:91162497:91163331:+	0	+
#Deleted in new
chr9	91162870	91165658	ENSG00000235641.4|LINC00484|lncRNA|chr9:91162870:91165658:+	0	+
#Deleted in new
chr9	91163004	91163087	ENSG00000237422.1|AL158071.3|lncRNA|chr9:91163004:91163087:-	0	-
#Deleted in new
chr9	91170668	91170721	ENSG00000229694.6|LINC00484|lncRNA|chr9:91170668:91170721:+	0	+
#Deleted in new
chr9	91170672	91170721	ENSG00000229694.6|LINC00484|lncRNA|chr9:91170672:91170721:+	0	+
#Partially deleted in new
chr9	91182056	91182385	ENSG00000229694.6|LINC00484|lncRNA|chr9:91182056:91182385:+	0	+
#Deleted in new
chr9	91182265	91182380	ENSG00000229694.6|LINC00484|lncRNA|chr9:91182265:91182380:+	0	+
#Deleted in new
chr9	91342714	91343233	ENSG00000148090.11|AUH|pc|chr9:91342714:91343233:-	0	-
#Deleted in new
chr9	91563090	91563329	ENSG00000169071.14|ROR2|pc|chr9:91563090:91563329:-	0	-
#Deleted in new
chr9	91694319	91694411	ENSG00000169071.14|ROR2|pc|chr9:91694319:91694411:-	0	-
#Deleted in new
chr9	91717306	91717396	ENSG00000169071.14|ROR2|pc|chr9:91717306:91717396:-	0	-
#Deleted in new
chr9	91883257	91883383	ENSG00000169071.14|ROR2|pc|chr9:91883257:91883383:-	0	-
#Deleted in new
chr9	91923652	91923928	ENSG00000169071.14|ROR2|pc|chr9:91923652:91923928:-	0	-
#Deleted in new
chr9	91923667	91923928	ENSG00000169071.14|ROR2|pc|chr9:91923667:91923928:-	0	-
#Deleted in new
chr9	91923764	91923928	ENSG00000169071.14|ROR2|pc|chr9:91923764:91923928:-	0	-
#Partially deleted in new
chr9	92079060	92079566	ENSG00000090054.13|SPTLC1|pc|chr9:92079060:92079566:-	0	-
#Partially deleted in new
chr9	92079433	92079566	ENSG00000090054.13|SPTLC1|pc|chr9:92079433:92079566:-	0	-
#Deleted in new
chr9	92107800	92108069	ENSG00000090054.13|SPTLC1|pc|chr9:92107800:92108069:-	0	-
#Deleted in new
chr9	92114921	92115066	ENSG00000090054.13|SPTLC1|pc|chr9:92114921:92115066:-	0	-
#Partially deleted in new
chr9	92156109	92156289	ENSG00000225511.6|LINC00475|lncRNA|chr9:92156109:92156289:+	0	+
#Deleted in new
chr9	92158100	92158210	ENSG00000225511.6|LINC00475|lncRNA|chr9:92158100:92158210:+	0	+
#Deleted in new
chr9	92158100	92160114	ENSG00000225511.6|LINC00475|lncRNA|chr9:92158100:92160114:+	0	+
#Deleted in new
chr9	92158333	92158488	ENSG00000225511.6|LINC00475|lncRNA|chr9:92158333:92158488:+	0	+
#Deleted in new
chr9	92205355	92205436	ENSG00000236115.1|AL136097.2|lncRNA|chr9:92205355:92205436:+	0	+
#Deleted in new
chr9	92209448	92209595	ENSG00000236115.1|AL136097.2|lncRNA|chr9:92209448:92209595:+	0	+
#Partially deleted in new
chr9	92240288	92240961	ENSG00000196305.17|IARS|pc|chr9:92240288:92240961:-	0	-
#Deleted in new
chr9	92240642	92240691	ENSG00000196305.17|IARS|pc|chr9:92240642:92240691:-	0	-
#Deleted in new
chr9	92308904	92308950	ENSG00000198000.11|NOL8|pc|chr9:92308904:92308950:-	0	-
#Deleted in new
chr9	92319942	92320137	ENSG00000198000.11|NOL8|pc|chr9:92319942:92320137:-	0	-
#Deleted in new
chr9	92319942	92320379	ENSG00000198000.11|NOL8|pc|chr9:92319942:92320379:-	0	-
#Deleted in new
chr9	92319987	92320382	ENSG00000198000.11|NOL8|pc|chr9:92319987:92320382:-	0	-
#Deleted in new
chr9	92320129	92320382	ENSG00000198000.11|NOL8|pc|chr9:92320129:92320382:-	0	-
#Deleted in new
chr9	92320190	92320379	ENSG00000198000.11|NOL8|pc|chr9:92320190:92320379:-	0	-
#Partially deleted in new
chr9	92324608	92324675	ENSG00000198000.11|NOL8|pc|chr9:92324608:92324675:-	0	-
#Deleted in new
chr9	92536600	92536655	ENSG00000106823.12|ECM2|pc|chr9:92536600:92536655:-	0	-
#Deleted in new
chr9	92862139	92862165	ENSG00000127081.13|ZNF484|pc|chr9:92862139:92862165:-	0	-
#Deleted in new
chr9	92875014	92875059	ENSG00000127081.13|ZNF484|pc|chr9:92875014:92875059:-	0	-
#Deleted in new
chr9	92877819	92878038	ENSG00000127081.13|ZNF484|pc|chr9:92877819:92878038:-	0	-
#Deleted in new
chr9	92877889	92878008	ENSG00000127081.13|ZNF484|pc|chr9:92877889:92878008:-	0	-
#Deleted in new
chr9	92877889	92878022	ENSG00000127081.13|ZNF484|pc|chr9:92877889:92878022:-	0	-
#Deleted in new
chr9	93069099	93069148	ENSG00000157303.10|SUSD3|pc|chr9:93069099:93069148:+	0	+
#Partially deleted in new
chr9	93124898	93126190	ENSG00000131669.9|NINJ1|pc|chr9:93124898:93126190:-	0	-
#Deleted in new
chr9	93147039	93147191	ENSG00000203364.2|AL390760.1|lncRNA|chr9:93147039:93147191:+	0	+
#Deleted in new
chr9	93148332	93148556	ENSG00000203364.2|AL390760.1|lncRNA|chr9:93148332:93148556:+	0	+
#Deleted in new
chr9	93267019	93267244	ENSG00000165238.16|WNK2|pc|chr9:93267019:93267244:+	0	+
#Deleted in new
chr9	93430341	93430793	ENSG00000237385.1|AL583839.2|lncRNA|chr9:93430341:93430793:-	0	-
#Deleted in new
chr9	93431110	93431299	ENSG00000237385.1|AL583839.2|lncRNA|chr9:93431110:93431299:-	0	-
#Deleted in new
chr9	93435331	93435922	ENSG00000227603.1|AL583839.1|lncRNA|chr9:93435331:93435922:-	0	-
#Deleted in new
chr9	93437021	93437121	ENSG00000227603.1|AL583839.1|lncRNA|chr9:93437021:93437121:-	0	-
#Partially deleted in new
chr9	93446493	93447697	ENSG00000188938.15|FAM120AOS|pc|chr9:93446493:93447697:-	0	-
#Partially deleted in new
chr9	93446524	93447697	ENSG00000188938.15|FAM120AOS|pc|chr9:93446524:93447697:-	0	-
#Partially deleted in new
chr9	93446532	93447697	ENSG00000188938.15|FAM120AOS|pc|chr9:93446532:93447697:-	0	-
#Partially deleted in new
chr9	93446904	93447697	ENSG00000188938.15|FAM120AOS|pc|chr9:93446904:93447697:-	0	-
#Partially deleted in new
chr9	93446923	93447697	ENSG00000188938.15|FAM120AOS|pc|chr9:93446923:93447697:-	0	-
#Partially deleted in new
chr9	93447267	93447697	ENSG00000188938.15|FAM120AOS|pc|chr9:93447267:93447697:-	0	-
#Deleted in new
chr9	93448368	93448489	ENSG00000188938.15|FAM120AOS|pc|chr9:93448368:93448489:-	0	-
#Deleted in new
chr9	93450741	93450983	ENSG00000188938.15|FAM120AOS|pc|chr9:93450741:93450983:-	0	-
#Deleted in new
chr9	93450944	93451114	ENSG00000188938.15|FAM120AOS|pc|chr9:93450944:93451114:-	0	-
#Deleted in new
chr9	93450944	93451208	ENSG00000188938.15|FAM120AOS|pc|chr9:93450944:93451208:-	0	-
#Deleted in new
chr9	93857082	93857250	ENSG00000231990.1|AL442224.1|lncRNA|chr9:93857082:93857250:+	0	+
#Deleted in new
chr9	93858110	93858333	ENSG00000231990.1|AL442224.1|lncRNA|chr9:93858110:93858333:+	0	+
#Deleted in new
chr9	94199197	94199251	ENSG00000230262.6|MIRLET7DHG|lncRNA|chr9:94199197:94199251:-	0	-
#Deleted in new
chr9	94200485	94200627	ENSG00000269946.1|AL158152.2|lncRNA|chr9:94200485:94200627:+	0	+
#Deleted in new
chr9	94200813	94200872	ENSG00000230262.6|MIRLET7DHG|lncRNA|chr9:94200813:94200872:-	0	-
#Deleted in new
chr9	94204492	94204543	ENSG00000230262.6|MIRLET7DHG|lncRNA|chr9:94204492:94204543:-	0	-
#Deleted in new
chr9	94204492	94204568	ENSG00000230262.6|MIRLET7DHG|lncRNA|chr9:94204492:94204568:-	0	-
#Deleted in new
chr9	94259310	94259345	ENSG00000175787.16|ZNF169|pc|chr9:94259310:94259345:+	0	+
#Deleted in new
chr9	94259320	94259345	ENSG00000175787.16|ZNF169|pc|chr9:94259320:94259345:+	0	+
#Deleted in new
chr9	94259327	94259345	ENSG00000175787.16|ZNF169|pc|chr9:94259327:94259345:+	0	+
#Partially deleted in new
chr9	94320476	94320593	ENSG00000130950.13|NUTM2F|pc|chr9:94320476:94320593:-	0	-
#Deleted in new
chr9	94332475	94332988	ENSG00000232063.1|AL691447.2|lncRNA|chr9:94332475:94332988:+	0	+
#Deleted in new
chr9	94359484	94360948	ENSG00000232063.1|AL691447.2|lncRNA|chr9:94359484:94360948:+	0	+
#Deleted in new
chr9	94555068	94555310	ENSG00000231806.2|PCAT7|lncRNA|chr9:94555068:94555310:+	0	+
#Deleted in new
chr9	94763126	94763411	ENSG00000148120.16|C9orf3|pc|chr9:94763126:94763411:+	0	+
#Deleted in new
chr9	94900428	94900455	ENSG00000236095.1|AL807757.2|lncRNA|chr9:94900428:94900455:+	0	+
#Deleted in new
chr9	94920214	94920335	ENSG00000148120.16|C9orf3|pc|chr9:94920214:94920335:+	0	+
#Deleted in new
chr9	94931714	94931833	ENSG00000148120.16|C9orf3|pc|chr9:94931714:94931833:+	0	+
#Deleted in new
chr9	94931714	94933671	ENSG00000148120.16|C9orf3|pc|chr9:94931714:94933671:+	0	+
#Deleted in new
chr9	94934563	94935356	ENSG00000148120.16|C9orf3|pc|chr9:94934563:94935356:+	0	+
#Deleted in new
chr9	94934772	94934946	ENSG00000224764.1|AL353768.1|lncRNA|chr9:94934772:94934946:-	0	-
#Partially deleted in new
chr9	95004979	95005065	ENSG00000148120.16|C9orf3|pc|chr9:95004979:95005065:+	0	+
#Partially deleted in new
chr9	95004995	95005065	ENSG00000148120.16|C9orf3|pc|chr9:95004995:95005065:+	0	+
#Partially deleted in new
chr9	95005007	95005065	ENSG00000148120.16|C9orf3|pc|chr9:95005007:95005065:+	0	+
#Partially deleted in new
chr9	95005012	95005065	ENSG00000148120.16|C9orf3|pc|chr9:95005012:95005065:+	0	+
#Partially deleted in new
chr9	95099053	95101850	ENSG00000158169.12|FANCC|pc|chr9:95099053:95101850:-	0	-
#Partially deleted in new
chr9	95099054	95101850	ENSG00000158169.12|FANCC|pc|chr9:95099054:95101850:-	0	-
#Deleted in new
chr9	95113707	95113749	ENSG00000229065.1|AL354893.2|lncRNA|chr9:95113707:95113749:+	0	+
#Partially deleted in new
chr9	95113974	95114461	ENSG00000229065.1|AL354893.2|lncRNA|chr9:95113974:95114461:+	0	+
#Deleted in new
chr9	95316831	95316894	ENSG00000158169.12|FANCC|pc|chr9:95316831:95316894:-	0	-
#Partially deleted in new
chr9	95317128	95317225	ENSG00000158169.12|FANCC|pc|chr9:95317128:95317225:-	0	-
#Deleted in new
chr9	95414833	95416164	ENSG00000158169.12|FANCC|pc|chr9:95414833:95416164:-	0	-
#Deleted in new
chr9	95599544	95599685	ENSG00000229345.1|AL392185.1|lncRNA|chr9:95599544:95599685:-	0	-
#Deleted in new
chr9	95715403	95715697	ENSG00000228142.2|AL354861.2|lncRNA|chr9:95715403:95715697:+	0	+
#Deleted in new
chr9	95715403	95715718	ENSG00000228142.2|AL354861.2|lncRNA|chr9:95715403:95715718:+	0	+
#Deleted in new
chr9	95759230	95759524	ENSG00000175611.11|LINC00476|lncRNA|chr9:95759230:95759524:-	0	-
#Deleted in new
chr9	95759721	95759836	ENSG00000175611.11|LINC00476|lncRNA|chr9:95759721:95759836:-	0	-
#Deleted in new
chr9	95850226	95850292	ENSG00000175611.11|LINC00476|lncRNA|chr9:95850226:95850292:-	0	-
#Deleted in new
chr9	95869839	95870441	ENSG00000175611.11|LINC00476|lncRNA|chr9:95869839:95870441:-	0	-
#Deleted in new
chr9	95870282	95870441	ENSG00000175611.11|LINC00476|lncRNA|chr9:95870282:95870441:-	0	-
#Deleted in new
chr9	95870283	95870441	ENSG00000175611.11|LINC00476|lncRNA|chr9:95870283:95870441:-	0	-
#Partially deleted in new
chr9	95875864	95875977	ENSG00000175611.11|LINC00476|lncRNA|chr9:95875864:95875977:-	0	-
#Deleted in new
chr9	95954727	95954922	ENSG00000182150.15|ERCC6L2|pc|chr9:95954727:95954922:+	0	+
#Deleted in new
chr9	95971543	95971595	ENSG00000182150.15|ERCC6L2|pc|chr9:95971543:95971595:+	0	+
#Deleted in new
chr9	96019731	96021281	ENSG00000225194.2|LINC00092|lncRNA|chr9:96019731:96021281:-	0	-
#Deleted in new
chr9	96021013	96021281	ENSG00000225194.2|LINC00092|lncRNA|chr9:96021013:96021281:-	0	-
#Deleted in new
chr9	96021584	96021760	ENSG00000225194.2|LINC00092|lncRNA|chr9:96021584:96021760:-	0	-
#Deleted in new
chr9	96027664	96027960	ENSG00000225194.2|LINC00092|lncRNA|chr9:96027664:96027960:-	0	-
#Deleted in new
chr9	96027664	96027965	ENSG00000225194.2|LINC00092|lncRNA|chr9:96027664:96027965:-	0	-
#Deleted in new
chr9	96095210	96095312	ENSG00000237212.1|AL449403.1|lncRNA|chr9:96095210:96095312:+	0	+
#Deleted in new
chr9	96097351	96097555	ENSG00000237212.1|AL449403.1|lncRNA|chr9:96097351:96097555:+	0	+
#Deleted in new
chr9	96098881	96099024	ENSG00000237212.1|AL449403.1|lncRNA|chr9:96098881:96099024:+	0	+
#Partially deleted in new
chr9	96100269	96100536	ENSG00000237212.1|AL449403.1|lncRNA|chr9:96100269:96100536:+	0	+
#Partially deleted in new
chr9	96101116	96101912	ENSG00000237212.1|AL449403.1|lncRNA|chr9:96101116:96101912:+	0	+
#Deleted in new
chr9	96106660	96109036	ENSG00000275465.5|AL449403.2|lncRNA|chr9:96106660:96109036:-	0	-
#Deleted in new
chr9	96114634	96114754	ENSG00000275465.5|AL449403.2|lncRNA|chr9:96114634:96114754:-	0	-
#Deleted in new
chr9	96239326	96239671	ENSG00000130948.9|HSD17B3|pc|chr9:96239326:96239671:-	0	-
#Deleted in new
chr9	96239822	96239904	ENSG00000130948.9|HSD17B3|pc|chr9:96239822:96239904:-	0	-
#Deleted in new
chr9	96247222	96247335	ENSG00000232283.1|HSD17B3-AS1|lncRNA|chr9:96247222:96247335:+	0	+
#Partially deleted in new
chr9	96249582	96250393	ENSG00000232283.1|HSD17B3-AS1|lncRNA|chr9:96249582:96250393:+	0	+
#Partially deleted in new
chr9	96249909	96250052	ENSG00000130948.9|HSD17B3|pc|chr9:96249909:96250052:-	0	-
#Partially deleted in new
chr9	96250307	96250470	ENSG00000130948.9|HSD17B3|pc|chr9:96250307:96250470:-	0	-
#Deleted in new
chr9	96357410	96357551	ENSG00000130958.11|SLC35D2|pc|chr9:96357410:96357551:-	0	-
#Deleted in new
chr9	96373999	96374082	ENSG00000130958.11|SLC35D2|pc|chr9:96373999:96374082:-	0	-
#Deleted in new
chr9	96538626	96538725	ENSG00000081377.16|CDC14B|pc|chr9:96538626:96538725:-	0	-
#Partially deleted in new
chr9	96639576	96641886	ENSG00000158122.11|AAED1|pc|chr9:96639576:96641886:-	0	-
#Deleted in new
chr9	96687055	96687324	ENSG00000224848.1|AL589843.1|lncRNA|chr9:96687055:96687324:+	0	+
#Deleted in new
chr9	96720965	96721121	ENSG00000224848.1|AL589843.1|lncRNA|chr9:96720965:96721121:+	0	+
#Deleted in new
chr9	96774787	96774846	ENSG00000081386.12|ZNF510|pc|chr9:96774787:96774846:-	0	-
#Deleted in new
chr9	96775999	96776245	ENSG00000081386.12|ZNF510|pc|chr9:96775999:96776245:-	0	-
#Deleted in new
chr9	96777581	96778056	ENSG00000081386.12|ZNF510|pc|chr9:96777581:96778056:-	0	-
#Deleted in new
chr9	96778033	96778046	ENSG00000081386.12|ZNF510|pc|chr9:96778033:96778046:-	0	-
#Deleted in new
chr9	96778033	96778129	ENSG00000081386.12|ZNF510|pc|chr9:96778033:96778129:-	0	-
#Deleted in new
chr9	96851946	96852005	ENSG00000196597.11|ZNF782|pc|chr9:96851946:96852005:-	0	-
#Deleted in new
chr9	96852852	96853014	ENSG00000196597.11|ZNF782|pc|chr9:96852852:96853014:-	0	-
#Deleted in new
chr9	96852852	96853069	ENSG00000196597.11|ZNF782|pc|chr9:96852852:96853069:-	0	-
#Deleted in new
chr9	96852852	96853072	ENSG00000196597.11|ZNF782|pc|chr9:96852852:96853072:-	0	-
#Deleted in new
chr9	96852982	96853014	ENSG00000196597.11|ZNF782|pc|chr9:96852982:96853014:-	0	-
#Deleted in new
chr9	96854087	96854183	ENSG00000196597.11|ZNF782|pc|chr9:96854087:96854183:-	0	-
#Deleted in new
chr9	96854087	96854277	ENSG00000196597.11|ZNF782|pc|chr9:96854087:96854277:-	0	-
#Deleted in new
chr9	96854087	96854360	ENSG00000196597.11|ZNF782|pc|chr9:96854087:96854360:-	0	-
#Deleted in new
chr9	96854087	96854488	ENSG00000196597.11|ZNF782|pc|chr9:96854087:96854488:-	0	-
#Deleted in new
chr9	96860240	96860414	ENSG00000196597.11|ZNF782|pc|chr9:96860240:96860414:-	0	-
#Deleted in new
chr9	96861527	96861603	ENSG00000196597.11|ZNF782|pc|chr9:96861527:96861603:-	0	-
#Deleted in new
chr9	96897916	96898127	ENSG00000196312.12|MFSD14C|pc|chr9:96897916:96898127:-	0	-
#Deleted in new
chr9	96898065	96898127	ENSG00000196312.12|MFSD14C|pc|chr9:96898065:96898127:-	0	-
#Deleted in new
chr9	96902916	96903108	ENSG00000196312.12|MFSD14C|pc|chr9:96902916:96903108:-	0	-
#Deleted in new
chr9	96933521	96933915	ENSG00000196312.12|MFSD14C|pc|chr9:96933521:96933915:-	0	-
#Deleted in new
chr9	96933794	96933915	ENSG00000196312.12|MFSD14C|pc|chr9:96933794:96933915:-	0	-
#Deleted in new
chr9	96939557	96940253	ENSG00000188152.12|NUTM2G|pc|chr9:96939557:96940253:+	0	+
#Partially deleted in new
chr9	96942912	96944085	ENSG00000196312.12|MFSD14C|pc|chr9:96942912:96944085:-	0	-
#Deleted in new
chr9	96946044	96946221	ENSG00000196312.12|MFSD14C|pc|chr9:96946044:96946221:-	0	-
#Deleted in new
chr9	96948910	96948920	ENSG00000196312.12|MFSD14C|pc|chr9:96948910:96948920:-	0	-
#Split in new
chr9	97029678	97033048	ENSG00000136943.10|CTSV|pc|chr9:97029678:97033048:-	0	-
#Deleted in new
chr9	97039606	97039643	ENSG00000136943.10|CTSV|pc|chr9:97039606:97039643:-	0	-
#Deleted in new
chr9	97234884	97235014	ENSG00000235494.1|AL590705.2|lncRNA|chr9:97234884:97235014:+	0	+
#Deleted in new
chr9	97237763	97238085	ENSG00000203279.3|AL590705.1|lncRNA|chr9:97237763:97238085:-	0	-
#Deleted in new
chr9	97345605	97345813	ENSG00000197816.13|CCDC180|pc|chr9:97345605:97345813:+	0	+
#Partially deleted in new
chr9	97370640	97374648	ENSG00000197816.13|CCDC180|pc|chr9:97370640:97374648:+	0	+
#Partially deleted in new
chr9	97371871	97374648	ENSG00000197816.13|CCDC180|pc|chr9:97371871:97374648:+	0	+
#Deleted in new
chr9	97517742	97517836	ENSG00000228174.7|AL162385.1|lncRNA|chr9:97517742:97517836:-	0	-
#Deleted in new
chr9	97635787	97635866	ENSG00000231521.1|AL162385.2|lncRNA|chr9:97635787:97635866:-	0	-
#Deleted in new
chr9	97635962	97636051	ENSG00000231521.1|AL162385.2|lncRNA|chr9:97635962:97636051:-	0	-
#Deleted in new
chr9	97672710	97672781	ENSG00000136937.12|NCBP1|pc|chr9:97672710:97672781:+	0	+
#Partially deleted in new
chr9	97743207	97744935	ENSG00000260677.1|AL445531.1|lncRNA|chr9:97743207:97744935:+	0	+
#Deleted in new
chr9	97986550	97986815	ENSG00000236896.1|AL354726.1|lncRNA|chr9:97986550:97986815:-	0	-
#Deleted in new
chr9	98011270	98011389	ENSG00000136938.8|ANP32B|pc|chr9:98011270:98011389:+	0	+
#Deleted in new
chr9	98012420	98012472	ENSG00000136938.8|ANP32B|pc|chr9:98012420:98012472:+	0	+
#Deleted in new
chr9	98069274	98069687	ENSG00000106785.14|TRIM14|pc|chr9:98069274:98069687:-	0	-
#Partially deleted in new
chr9	98074642	98077017	ENSG00000095380.10|NANS|pc|chr9:98074642:98077017:+	0	+
#Deleted in new
chr9	98075569	98075732	ENSG00000095380.10|NANS|pc|chr9:98075569:98075732:+	0	+
#Partially deleted in new
chr9	98302842	98302896	ENSG00000136928.6|GABBR2|pc|chr9:98302842:98302896:-	0	-
#Deleted in new
chr9	98375150	98375307	ENSG00000136928.6|GABBR2|pc|chr9:98375150:98375307:-	0	-
#Deleted in new
chr9	98515993	98516299	ENSG00000136928.6|GABBR2|pc|chr9:98515993:98516299:-	0	-
#Deleted in new
chr9	98581080	98581179	ENSG00000136928.6|GABBR2|pc|chr9:98581080:98581179:-	0	-
#Partially deleted in new
chr9	98732018	98736623	ENSG00000165138.17|ANKS6|pc|chr9:98732018:98736623:-	0	-
#Deleted in new
chr9	98796683	98796965	ENSG00000165138.17|ANKS6|pc|chr9:98796683:98796965:-	0	-
#Deleted in new
chr9	98847392	98847491	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98847392:98847491:-	0	-
#Deleted in new
chr9	98854192	98854331	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98854192:98854331:-	0	-
#Deleted in new
chr9	98859571	98860154	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98859571:98860154:-	0	-
#Deleted in new
chr9	98868990	98869417	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98868990:98869417:-	0	-
#Deleted in new
chr9	98868990	98869457	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98868990:98869457:-	0	-
#Deleted in new
chr9	98868990	98869513	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98868990:98869513:-	0	-
#Deleted in new
chr9	98868994	98869457	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98868994:98869457:-	0	-
#Deleted in new
chr9	98869001	98869490	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98869001:98869490:-	0	-
#Deleted in new
chr9	98869061	98869683	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98869061:98869683:-	0	-
#Deleted in new
chr9	98869066	98869457	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98869066:98869457:-	0	-
#Deleted in new
chr9	98869114	98869490	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98869114:98869490:-	0	-
#Deleted in new
chr9	98869164	98869490	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98869164:98869490:-	0	-
#Deleted in new
chr9	98869240	98869490	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98869240:98869490:-	0	-
#Deleted in new
chr9	98869336	98869457	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98869336:98869457:-	0	-
#Deleted in new
chr9	98869381	98869490	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98869381:98869490:-	0	-
#Deleted in new
chr9	98869586	98869683	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98869586:98869683:-	0	-
#Deleted in new
chr9	98869964	98870064	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98869964:98870064:-	0	-
#Deleted in new
chr9	98869980	98870064	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98869980:98870064:-	0	-
#Deleted in new
chr9	98870113	98870771	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98870113:98870771:-	0	-
#Deleted in new
chr9	98870348	98870984	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98870348:98870984:-	0	-
#Deleted in new
chr9	98870432	98870771	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98870432:98870771:-	0	-
#Deleted in new
chr9	98870802	98870984	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98870802:98870984:-	0	-
#Deleted in new
chr9	98870890	98870984	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98870890:98870984:-	0	-
#Deleted in new
chr9	98871359	98871396	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98871359:98871396:-	0	-
#Deleted in new
chr9	98871957	98872263	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98871957:98872263:-	0	-
#Deleted in new
chr9	98872062	98872263	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98872062:98872263:-	0	-
#Deleted in new
chr9	98872188	98872257	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98872188:98872257:-	0	-
#Deleted in new
chr9	98872188	98872260	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98872188:98872260:-	0	-
#Deleted in new
chr9	98872188	98872262	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98872188:98872262:-	0	-
#Deleted in new
chr9	98872188	98872263	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98872188:98872263:-	0	-
#Deleted in new
chr9	98872188	98872278	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98872188:98872278:-	0	-
#Deleted in new
chr9	98872188	98872403	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98872188:98872403:-	0	-
#Deleted in new
chr9	98872188	98872415	ENSG00000267026.5|AL136084.2|lncRNA|chr9:98872188:98872415:-	0	-
#Deleted in new
chr9	98943178	98943309	ENSG00000204291.10|COL15A1|pc|chr9:98943178:98943309:+	0	+
#Deleted in new
chr9	99020388	99020442	ENSG00000204291.10|COL15A1|pc|chr9:99020388:99020442:+	0	+
#Deleted in new
chr9	99183372	99183513	ENSG00000227269.1|AL162427.1|lncRNA|chr9:99183372:99183513:+	0	+
#Partially deleted in new
chr9	99369731	99369868	ENSG00000271086.5|NAMA|lncRNA|chr9:99369731:99369868:-	0	-
#Deleted in new
chr9	99376399	99376496	ENSG00000271086.5|NAMA|lncRNA|chr9:99376399:99376496:-	0	-
#Deleted in new
chr9	99536622	99536924	ENSG00000234860.1|AL162394.1|lncRNA|chr9:99536622:99536924:+	0	+
#Deleted in new
chr9	99894879	99895005	ENSG00000255145.2|STX17-AS1|lncRNA|chr9:99894879:99895005:-	0	-
#Partially deleted in new
chr9	99913989	99914151	ENSG00000136874.10|STX17|pc|chr9:99913989:99914151:+	0	+
#Deleted in new
chr9	99929807	99929896	ENSG00000254571.1|AL358937.1|lncRNA|chr9:99929807:99929896:-	0	-
#Deleted in new
chr9	99937907	99938076	ENSG00000136874.10|STX17|pc|chr9:99937907:99938076:+	0	+
#Deleted in new
chr9	99945718	99945850	ENSG00000136874.10|STX17|pc|chr9:99945718:99945850:+	0	+
#Deleted in new
chrX	10016395	10016862	ENSG00000047644.18|WWC3|pc|chrX:10016395:10016862:+	0	+
#Deleted in new
chrX	10024841	10025077	ENSG00000225076.1|WWC3-AS1|lncRNA|chrX:10024841:10025077:-	0	-
#Deleted in new
chrX	10038312	10038654	ENSG00000225076.1|WWC3-AS1|lncRNA|chrX:10038312:10038654:-	0	-
#Deleted in new
chrX	100660944	100661014	ENSG00000102359.6|SRPX2|pc|chrX:100660944:100661014:+	0	+
#Deleted in new
chrX	100704810	100704886	ENSG00000102362.15|SYTL4|pc|chrX:100704810:100704886:-	0	-
#Deleted in new
chrX	10078798	10078875	ENSG00000047644.18|WWC3|pc|chrX:10078798:10078875:+	0	+
#Deleted in new
chrX	10079724	10079804	ENSG00000047644.18|WWC3|pc|chrX:10079724:10079804:+	0	+
#Deleted in new
chrX	10094131	10094281	ENSG00000047644.18|WWC3|pc|chrX:10094131:10094281:+	0	+
#Deleted in new
chrX	10098505	10098579	ENSG00000047644.18|WWC3|pc|chrX:10098505:10098579:+	0	+
#Deleted in new
chrX	101043563	101043655	ENSG00000225839.2|TRMT2B-AS1|lncRNA|chrX:101043563:101043655:-	0	-
#Deleted in new
chrX	101051250	101051366	ENSG00000188917.14|TRMT2B|pc|chrX:101051250:101051366:-	0	-
#Deleted in new
chrX	101094363	101094476	ENSG00000225839.2|TRMT2B-AS1|lncRNA|chrX:101094363:101094476:-	0	-
#Deleted in new
chrX	101099808	101100065	ENSG00000102384.13|CENPI|pc|chrX:101099808:101100065:+	0	+
#Deleted in new
chrX	101100436	101100700	ENSG00000102384.13|CENPI|pc|chrX:101100436:101100700:+	0	+
#Deleted in new
chrX	10122618	10122739	ENSG00000047644.18|WWC3|pc|chrX:10122618:10122739:+	0	+
#Deleted in new
chrX	10124264	10124339	ENSG00000047644.18|WWC3|pc|chrX:10124264:10124339:+	0	+
#Deleted in new
chrX	10125023	10125110	ENSG00000047644.18|WWC3|pc|chrX:10125023:10125110:+	0	+
#Deleted in new
chrX	10126113	10126306	ENSG00000047644.18|WWC3|pc|chrX:10126113:10126306:+	0	+
#Deleted in new
chrX	10127987	10128161	ENSG00000047644.18|WWC3|pc|chrX:10127987:10128161:+	0	+
#Deleted in new
chrX	101292789	101293057	ENSG00000102387.15|TAF7L|pc|chrX:101292789:101293057:-	0	-
#Deleted in new
chrX	10129955	10130121	ENSG00000047644.18|WWC3|pc|chrX:10129955:10130121:+	0	+
#Partially deleted in new
chrX	101391754	101393852	ENSG00000241343.9|RPL36A|pc|chrX:101391754:101393852:+	0	+
#Deleted in new
chrX	101392049	101392095	ENSG00000241343.9|RPL36A|pc|chrX:101392049:101392095:+	0	+
#Deleted in new
chrX	101399743	101399800	ENSG00000102393.9|GLA|pc|chrX:101399743:101399800:-	0	-
#Partially deleted in new
chrX	10141434	10144478	ENSG00000047644.18|WWC3|pc|chrX:10141434:10144478:+	0	+
#Deleted in new
chrX	101445997	101446044	ENSG00000196440.11|ARMCX4|pc|chrX:101445997:101446044:+	0	+
#Deleted in new
chrX	101445997	101446132	ENSG00000196440.11|ARMCX4|pc|chrX:101445997:101446132:+	0	+
#Deleted in new
chrX	101447493	101447877	ENSG00000196440.11|ARMCX4|pc|chrX:101447493:101447877:+	0	+
#Deleted in new
chrX	101504936	101505355	ENSG00000196440.11|ARMCX4|pc|chrX:101504936:101505355:+	0	+
#Deleted in new
chrX	101509358	101509427	ENSG00000196440.11|ARMCX4|pc|chrX:101509358:101509427:+	0	+
#Deleted in new
chrX	101509363	101509427	ENSG00000196440.11|ARMCX4|pc|chrX:101509363:101509427:+	0	+
#Deleted in new
chrX	101509589	101509678	ENSG00000196440.11|ARMCX4|pc|chrX:101509589:101509678:+	0	+
#Deleted in new
chrX	101511024	101511055	ENSG00000196440.11|ARMCX4|pc|chrX:101511024:101511055:+	0	+
#Deleted in new
chrX	101516479	101516954	ENSG00000196440.11|ARMCX4|pc|chrX:101516479:101516954:+	0	+
#Deleted in new
chrX	101524203	101524432	ENSG00000196440.11|ARMCX4|pc|chrX:101524203:101524432:+	0	+
#Deleted in new
chrX	101531643	101532012	ENSG00000196440.11|ARMCX4|pc|chrX:101531643:101532012:+	0	+
#Deleted in new
chrX	101531643	101533459	ENSG00000196440.11|ARMCX4|pc|chrX:101531643:101533459:+	0	+
#Deleted in new
chrX	101533083	101533459	ENSG00000196440.11|ARMCX4|pc|chrX:101533083:101533459:+	0	+
#Deleted in new
chrX	10156944	10157100	ENSG00000073464.11|CLCN4|pc|chrX:10156944:10157100:+	0	+
#Deleted in new
chrX	10156983	10157100	ENSG00000073464.11|CLCN4|pc|chrX:10156983:10157100:+	0	+
#Duplicated in new
chrX	10158288	10158551	ENSG00000073464.11|CLCN4|pc|chrX:10158288:10158551:+	0	+
#Deleted in new
chrX	101857504	101857577	ENSG00000126952.16|NXF5|pc|chrX:101857504:101857577:-	0	-
#Deleted in new
chrX	101918512	101918633	ENSG00000166432.14|ZMAT1|pc|chrX:101918512:101918633:-	0	-
#Deleted in new
chrX	102155858	102156057	ENSG00000184515.10|BEX5|pc|chrX:102155858:102156057:-	0	-
#Deleted in new
chrX	102247160	102247238	ENSG00000269405.6|NXF2|pc|chrX:102247160:102247238:+	0	+
#Deleted in new
chrX	102248436	102248558	ENSG00000269405.6|NXF2|pc|chrX:102248436:102248558:+	0	+
#Deleted in new
chrX	102307021	102307121	ENSG00000269405.6|NXF2|pc|chrX:102307021:102307121:+	0	+
#Deleted in new
chrX	102307025	102307121	ENSG00000269405.6|NXF2|pc|chrX:102307025:102307121:+	0	+
#Deleted in new
chrX	102372950	102373156	ENSG00000269437.6|NXF2B|pc|chrX:102372950:102373156:-	0	-
#Deleted in new
chrX	102374627	102374698	ENSG00000215029.8|TCP11X2|pc|chrX:102374627:102374698:-	0	-
#Deleted in new
chrX	102379993	102380089	ENSG00000215029.8|TCP11X2|pc|chrX:102379993:102380089:-	0	-
#Deleted in new
chrX	102379993	102380089	ENSG00000269437.6|NXF2B|pc|chrX:102379993:102380089:-	0	-
#Deleted in new
chrX	102379993	102380093	ENSG00000269437.6|NXF2B|pc|chrX:102379993:102380093:-	0	-
#Deleted in new
chrX	10242338	10242423	ENSG00000227042.1|AC003666.1|lncRNA|chrX:10242338:10242423:+	0	+
#Deleted in new
chrX	102438552	102438674	ENSG00000269437.6|NXF2B|pc|chrX:102438552:102438674:-	0	-
#Deleted in new
chrX	102439869	102439932	ENSG00000269437.6|NXF2B|pc|chrX:102439869:102439932:-	0	-
#Deleted in new
chrX	102456806	102456914	ENSG00000215029.8|TCP11X2|pc|chrX:102456806:102456914:-	0	-
#Deleted in new
chrX	102456806	102456914	ENSG00000269437.6|NXF2B|pc|chrX:102456806:102456914:-	0	-
#Deleted in new
chrX	102457672	102457812	ENSG00000215029.8|TCP11X2|pc|chrX:102457672:102457812:-	0	-
#Deleted in new
chrX	102457672	102457812	ENSG00000269437.6|NXF2B|pc|chrX:102457672:102457812:-	0	-
#Duplicated in new
chrX	102513675	102514124	ENSG00000158164.6|TMSB15A|pc|chrX:102513675:102514124:-	0	-
#Deleted in new
chrX	10257015	10257181	ENSG00000227042.1|AC003666.1|lncRNA|chrX:10257015:10257181:+	0	+
#Deleted in new
chrX	10262697	10262941	ENSG00000227042.1|AC003666.1|lncRNA|chrX:10262697:10262941:+	0	+
#Deleted in new
chrX	102637995	102638045	ENSG00000271147.7|ARMCX5-GPRASP2|lncRNA|chrX:102637995:102638045:+	0	+
#Deleted in new
chrX	102639399	102639527	ENSG00000271147.7|ARMCX5-GPRASP2|lncRNA|chrX:102639399:102639527:+	0	+
#Deleted in new
chrX	102639399	102639533	ENSG00000271147.7|ARMCX5-GPRASP2|lncRNA|chrX:102639399:102639533:+	0	+
#Deleted in new
chrX	102639399	102639538	ENSG00000271147.7|ARMCX5-GPRASP2|lncRNA|chrX:102639399:102639538:+	0	+
#Deleted in new
chrX	102639399	102639624	ENSG00000271147.7|ARMCX5-GPRASP2|lncRNA|chrX:102639399:102639624:+	0	+
#Deleted in new
chrX	102639399	102640507	ENSG00000271147.7|ARMCX5-GPRASP2|lncRNA|chrX:102639399:102640507:+	0	+
#Deleted in new
chrX	102649643	102649714	ENSG00000270050.1|AL035427.1|lncRNA|chrX:102649643:102649714:-	0	-
#Partially deleted in new
chrX	102720687	102720825	ENSG00000198908.11|BHLHB9|pc|chrX:102720687:102720825:+	0	+
#Deleted in new
chrX	102770351	102770420	ENSG00000223546.6|LINC00630|lncRNA|chrX:102770351:102770420:+	0	+
#Deleted in new
chrX	102816991	102817082	ENSG00000223546.6|LINC00630|lncRNA|chrX:102816991:102817082:+	0	+
#Deleted in new
chrX	102825992	102826169	ENSG00000223546.6|LINC00630|lncRNA|chrX:102825992:102826169:+	0	+
#Deleted in new
chrX	102826968	102827144	ENSG00000223546.6|LINC00630|lncRNA|chrX:102826968:102827144:+	0	+
#Deleted in new
chrX	102839800	102839863	ENSG00000223546.6|LINC00630|lncRNA|chrX:102839800:102839863:+	0	+
#Deleted in new
chrX	102839800	102839964	ENSG00000223546.6|LINC00630|lncRNA|chrX:102839800:102839964:+	0	+
#Deleted in new
chrX	102839907	102839972	ENSG00000223546.6|LINC00630|lncRNA|chrX:102839907:102839972:+	0	+
#Deleted in new
chrX	102865041	102865152	ENSG00000223546.6|LINC00630|lncRNA|chrX:102865041:102865152:+	0	+
#Deleted in new
chrX	10287833	10287891	ENSG00000227042.1|AC003666.1|lncRNA|chrX:10287833:10287891:+	0	+
#Deleted in new
chrX	102901022	102901133	ENSG00000239407.5|Z68871.1|lncRNA|chrX:102901022:102901133:+	0	+
#Deleted in new
chrX	102901630	102901771	ENSG00000239407.5|Z68871.1|lncRNA|chrX:102901630:102901771:+	0	+
#Deleted in new
chrX	102905660	102905691	ENSG00000239407.5|Z68871.1|lncRNA|chrX:102905660:102905691:+	0	+
#Deleted in new
chrX	102905660	102906158	ENSG00000239407.5|Z68871.1|lncRNA|chrX:102905660:102906158:+	0	+
#Deleted in new
chrX	102940470	102940561	ENSG00000234050.1|Z95624.1|lncRNA|chrX:102940470:102940561:-	0	-
#Deleted in new
chrX	103497522	103497613	ENSG00000234405.1|Z69733.1|lncRNA|chrX:103497522:103497613:+	0	+
#Split in new
chrX	103499749	103502875	ENSG00000172476.4|RAB40A|pc|chrX:103499749:103502875:-	0	-
#Deleted in new
chrX	103517373	103517525	ENSG00000172476.4|RAB40A|pc|chrX:103517373:103517525:-	0	-
#Deleted in new
chrX	103519369	103519489	ENSG00000172476.4|RAB40A|pc|chrX:103519369:103519489:-	0	-
#Deleted in new
chrX	103576230	103576532	ENSG00000133142.17|TCEAL4|pc|chrX:103576230:103576532:+	0	+
#Deleted in new
chrX	103577093	103577213	ENSG00000133142.17|TCEAL4|pc|chrX:103577093:103577213:+	0	+
#Deleted in new
chrX	103596607	103598904	ENSG00000279894.1|Z73965.1|lncRNA|chrX:103596607:103598904:+	0	+
#Deleted in new
chrX	103625317	103625435	ENSG00000196507.10|TCEAL3|pc|chrX:103625317:103625435:+	0	+
#Deleted in new
chrX	103626075	103626153	ENSG00000224031.1|TCEAL3-AS1|lncRNA|chrX:103626075:103626153:-	0	-
#Deleted in new
chrX	103626209	103626492	ENSG00000224031.1|TCEAL3-AS1|lncRNA|chrX:103626209:103626492:-	0	-
#Deleted in new
chrX	10365265	10365323	ENSG00000227042.1|AC003666.1|lncRNA|chrX:10365265:10365323:+	0	+
#Deleted in new
chrX	103684680	103684729	ENSG00000123562.16|MORF4L2|pc|chrX:103684680:103684729:-	0	-
#Deleted in new
chrX	103775471	103775499	ENSG00000123560.13|PLP1|pc|chrX:103775471:103775499:+	0	+
#Partially deleted in new
chrX	103917410	103918225	ENSG00000231728.3|AC234782.2|lncRNA|chrX:103917410:103918225:-	0	-
#Partially deleted in new
chrX	103931015	103932911	ENSG00000158427.14|TMSB15B|pc|chrX:103931015:103932911:+	0	+
#Deleted in new
chrX	103962626	103962723	ENSG00000158427.14|TMSB15B|pc|chrX:103962626:103962723:+	0	+
#Deleted in new
chrX	103962640	103962723	ENSG00000158427.14|TMSB15B|pc|chrX:103962640:103962723:+	0	+
#Deleted in new
chrX	103962674	103962723	ENSG00000158427.14|TMSB15B|pc|chrX:103962674:103962723:+	0	+
#Deleted in new
chrX	104011146	104011463	ENSG00000123569.8|H2BFWT|pc|chrX:104011146:104011463:-	0	-
#Deleted in new
chrX	104012689	104012748	ENSG00000123569.8|H2BFWT|pc|chrX:104012689:104012748:-	0	-
#Deleted in new
chrX	104012711	104012748	ENSG00000123569.8|H2BFWT|pc|chrX:104012711:104012748:-	0	-
#Deleted in new
chrX	104040827	104040864	ENSG00000101812.12|H2BFM|pc|chrX:104040827:104040864:+	0	+
#Deleted in new
chrX	104040827	104040886	ENSG00000101812.12|H2BFM|pc|chrX:104040827:104040886:+	0	+
#Deleted in new
chrX	104041087	104042454	ENSG00000101812.12|H2BFM|pc|chrX:104041087:104042454:+	0	+
#Deleted in new
chrX	104042111	104042454	ENSG00000101812.12|H2BFM|pc|chrX:104042111:104042454:+	0	+
#Partially deleted in new
chrX	104063870	104065984	ENSG00000269226.7|TMSB15B|pc|chrX:104063870:104065984:-	0	-
#Deleted in new
chrX	104076139	104076194	ENSG00000269226.7|TMSB15B|pc|chrX:104076139:104076194:-	0	-
#Deleted in new
chrX	104076139	104076212	ENSG00000269226.7|TMSB15B|pc|chrX:104076139:104076212:-	0	-
#Partially deleted in new
chrX	104130603	104131223	ENSG00000269743.2|SLC25A53|pc|chrX:104130603:104131223:-	0	-
#Deleted in new
chrX	104156877	104156988	ENSG00000269743.2|SLC25A53|pc|chrX:104156877:104156988:-	0	-
#Deleted in new
chrX	104156877	104157027	ENSG00000269743.2|SLC25A53|pc|chrX:104156877:104157027:-	0	-
#Duplicated in new
chrX	104250037	104250896	ENSG00000123576.5|ESX1|pc|chrX:104250037:104250896:-	0	-
#Deleted in new
chrX	104254767	104254933	ENSG00000123576.5|ESX1|pc|chrX:104254767:104254933:-	0	-
#Split in new
chrX	10445309	10449716	ENSG00000101871.14|MID1|pc|chrX:10445309:10449716:-	0	-
#Split in new
chrX	10445555	10449716	ENSG00000101871.14|MID1|pc|chrX:10445555:10449716:-	0	-
#Deleted in new
chrX	10501406	10501559	ENSG00000101871.14|MID1|pc|chrX:10501406:10501559:-	0	-
#Deleted in new
chrX	10505344	10506485	ENSG00000101871.14|MID1|pc|chrX:10505344:10506485:-	0	-
#Deleted in new
chrX	10589586	10589909	ENSG00000101871.14|MID1|pc|chrX:10589586:10589909:-	0	-
#Deleted in new
chrX	106638539	106638678	ENSG00000147231.13|CXorf57|pc|chrX:106638539:106638678:+	0	+
#Deleted in new
chrX	106813870	106815786	ENSG00000133131.14|MORC4|pc|chrX:106813870:106815786:-	0	-
#Partially deleted in new
chrX	106827169	106830083	ENSG00000133138.19|TBC1D8B|pc|chrX:106827169:106830083:+	0	+
#Partially deleted in new
chrX	106849244	106849831	ENSG00000133138.19|TBC1D8B|pc|chrX:106849244:106849831:+	0	+
#Deleted in new
chrX	107064419	107065758	ENSG00000089682.16|RBM41|pc|chrX:107064419:107065758:-	0	-
#Partially deleted in new
chrX	107069254	107070425	ENSG00000089682.16|RBM41|pc|chrX:107069254:107070425:-	0	-
#Partially deleted in new
chrX	107933029	107933120	ENSG00000236064.1|AL034399.2|lncRNA|chrX:107933029:107933120:-	0	-
#Partially deleted in new
chrX	108172468	108172532	ENSG00000197565.15|COL4A6|pc|chrX:108172468:108172532:-	0	-
#Partially deleted in new
chrX	108626209	108627269	ENSG00000188153.12|COL4A5|pc|chrX:108626209:108627269:+	0	+
#Deleted in new
chrX	108626497	108626555	ENSG00000188153.12|COL4A5|pc|chrX:108626497:108626555:+	0	+
#Deleted in new
chrX	109535780	109535977	ENSG00000101888.11|NXT2|pc|chrX:109535780:109535977:+	0	+
#Partially deleted in new
chrX	10963370	10963943	ENSG00000234129.7|AC073529.1|lncRNA|chrX:10963370:10963943:-	0	-
#Deleted in new
chrX	109685426	109685444	ENSG00000068366.19|ACSL4|pc|chrX:109685426:109685444:-	0	-
#Deleted in new
chrX	11038538	11038655	ENSG00000234129.7|AC073529.1|lncRNA|chrX:11038538:11038655:-	0	-
#Deleted in new
chrX	11094125	11094180	ENSG00000234129.7|AC073529.1|lncRNA|chrX:11094125:11094180:-	0	-
#Deleted in new
chrX	11110882	11111109	ENSG00000234129.7|AC073529.1|lncRNA|chrX:11110882:11111109:-	0	-
#Deleted in new
chrX	11110882	11111114	ENSG00000234129.7|AC073529.1|lncRNA|chrX:11110882:11111114:-	0	-
#Partially deleted in new
chrX	11110882	11111138	ENSG00000234129.7|AC073529.1|lncRNA|chrX:11110882:11111138:-	0	-
#Partially deleted in new
chrX	11110882	11111141	ENSG00000234129.7|AC073529.1|lncRNA|chrX:11110882:11111141:-	0	-
#Deleted in new
chrX	111665810	111665971	ENSG00000101901.11|ALG13|pc|chrX:111665810:111665971:+	0	+
#Deleted in new
chrX	111710995	111711101	ENSG00000229487.1|ALG13-AS1|lncRNA|chrX:111710995:111711101:-	0	-
#Deleted in new
chrX	111714245	111714289	ENSG00000101901.11|ALG13|pc|chrX:111714245:111714289:+	0	+
#Deleted in new
chrX	111716952	111717004	ENSG00000101901.11|ALG13|pc|chrX:111716952:111717004:+	0	+
#Deleted in new
chrX	111734367	111734411	ENSG00000101901.11|ALG13|pc|chrX:111734367:111734411:+	0	+
#Deleted in new
chrX	111734376	111734434	ENSG00000101901.11|ALG13|pc|chrX:111734376:111734434:+	0	+
#Deleted in new
chrX	113616299	113616674	ENSG00000241743.2|XACT|lncRNA|chrX:113616299:113616674:-	0	-
#Deleted in new
chrX	113618057	113618153	ENSG00000241743.2|XACT|lncRNA|chrX:113618057:113618153:-	0	-
#Deleted in new
chrX	113938192	113938218	ENSG00000241743.2|XACT|lncRNA|chrX:113938192:113938218:-	0	-
#Deleted in new
chrX	114717585	114717676	ENSG00000147246.9|HTR2C|pc|chrX:114717585:114717676:+	0	+
#Deleted in new
chrX	115018899	115018973	ENSG00000123496.7|IL13RA2|pc|chrX:115018899:115018973:-	0	-
#Deleted in new
chrX	115019849	115019977	ENSG00000123496.7|IL13RA2|pc|chrX:115019849:115019977:-	0	-
#Deleted in new
chrX	115289726	115289850	ENSG00000102021.10|LUZP4|pc|chrX:115289726:115289850:+	0	+
#Deleted in new
chrX	115289752	115289850	ENSG00000102021.10|LUZP4|pc|chrX:115289752:115289850:+	0	+
#Deleted in new
chrX	115518181	115519711	ENSG00000271826.5|PLS3-AS1|lncRNA|chrX:115518181:115519711:-	0	-
#Deleted in new
chrX	115527626	115527768	ENSG00000271826.5|PLS3-AS1|lncRNA|chrX:115527626:115527768:-	0	-
#Duplicated in new
chrX	115610802	115610921	ENSG00000102024.17|PLS3|pc|chrX:115610802:115610921:+	0	+
#Deleted in new
chrX	115614152	115614208	ENSG00000102024.17|PLS3|pc|chrX:115614152:115614208:+	0	+
#Deleted in new
chrX	115639717	115639769	ENSG00000102024.17|PLS3|pc|chrX:115639717:115639769:+	0	+
#Deleted in new
chrX	115840963	115841078	ENSG00000229335.1|DANT1|lncRNA|chrX:115840963:115841078:+	0	+
#Deleted in new
chrX	115841009	115841078	ENSG00000229335.1|DANT1|lncRNA|chrX:115841009:115841078:+	0	+
#Deleted in new
chrX	115842643	115842763	ENSG00000229335.1|DANT1|lncRNA|chrX:115842643:115842763:+	0	+
#Deleted in new
chrX	115842839	115843048	ENSG00000229335.1|DANT1|lncRNA|chrX:115842839:115843048:+	0	+
#Deleted in new
chrX	115842839	115843050	ENSG00000229335.1|DANT1|lncRNA|chrX:115842839:115843050:+	0	+
#Deleted in new
chrX	115917270	115919149	ENSG00000235244.3|DANT2|lncRNA|chrX:115917270:115919149:-	0	-
#Deleted in new
chrX	115946385	115946456	ENSG00000235244.3|DANT2|lncRNA|chrX:115946385:115946456:-	0	-
#Deleted in new
chrX	115968960	115969089	ENSG00000235244.3|DANT2|lncRNA|chrX:115968960:115969089:-	0	-
#Deleted in new
chrX	116462781	116463003	ENSG00000204019.4|CT83|pc|chrX:116462781:116463003:-	0	-
#Deleted in new
chrX	116694000	116694188	ENSG00000230159.1|BX119904.2|lncRNA|chrX:116694000:116694188:-	0	-
#Partially deleted in new
chrX	11765466	11767977	ENSG00000005302.17|MSL3|pc|chrX:11765466:11767977:+	0	+
#Deleted in new
chrX	118447059	118447114	ENSG00000131725.13|WDR44|pc|chrX:118447059:118447114:+	0	+
#Deleted in new
chrX	1187548	1187574	ENSG00000205755.11|CRLF2|pc|chrX:1187548:1187574:-	0	-
#Deleted in new
chrX	118845240	118845285	ENSG00000203650.8|LINC01285|lncRNA|chrX:118845240:118845285:+	0	+
#Deleted in new
chrX	118845949	118846064	ENSG00000203650.8|LINC01285|lncRNA|chrX:118845949:118846064:+	0	+
#Deleted in new
chrX	118884982	118885223	ENSG00000203650.8|LINC01285|lncRNA|chrX:118884982:118885223:+	0	+
#Deleted in new
chrX	118915356	118915478	ENSG00000203650.8|LINC01285|lncRNA|chrX:118915356:118915478:+	0	+
#Deleted in new
chrX	1190489	1191160	ENSG00000205755.11|CRLF2|pc|chrX:1190489:1191160:-	0	-
#Deleted in new
chrX	1190491	1191160	ENSG00000205755.11|CRLF2|pc|chrX:1190491:1191160:-	0	-
#Deleted in new
chrX	1190496	1191160	ENSG00000205755.11|CRLF2|pc|chrX:1190496:1191160:-	0	-
#Deleted in new
chrX	1190896	1191160	ENSG00000205755.11|CRLF2|pc|chrX:1190896:1191160:-	0	-
#Deleted in new
chrX	119093988	119094096	ENSG00000250423.2|KIAA1210|pc|chrX:119093988:119094096:-	0	-
#Deleted in new
chrX	119291528	119291621	ENSG00000230392.1|AC004835.1|lncRNA|chrX:119291528:119291621:+	0	+
#Partially deleted in new
chrX	119324906	119325023	ENSG00000230392.1|AC004835.1|lncRNA|chrX:119324906:119325023:+	0	+
#Deleted in new
chrX	119326181	119326317	ENSG00000230392.1|AC004835.1|lncRNA|chrX:119326181:119326317:+	0	+
#Deleted in new
chrX	119333049	119335610	ENSG00000230392.1|AC004835.1|lncRNA|chrX:119333049:119335610:+	0	+
#Deleted in new
chrX	119356300	119356444	ENSG00000226661.1|AC004973.1|lncRNA|chrX:119356300:119356444:-	0	-
#Deleted in new
chrX	119383758	119383879	ENSG00000226661.1|AC004973.1|lncRNA|chrX:119383758:119383879:-	0	-
#Deleted in new
chrX	119393225	119393595	ENSG00000226661.1|AC004973.1|lncRNA|chrX:119393225:119393595:-	0	-
#Partially deleted in new
chrX	119422916	119423316	ENSG00000237903.1|AC004000.1|lncRNA|chrX:119422916:119423316:+	0	+
#Deleted in new
chrX	119423514	119423547	ENSG00000237903.1|AC004000.1|lncRNA|chrX:119423514:119423547:+	0	+
#Deleted in new
chrX	1196779	1196900	ENSG00000205755.11|CRLF2|pc|chrX:1196779:1196900:-	0	-
#Deleted in new
chrX	1198561	1198724	ENSG00000205755.11|CRLF2|pc|chrX:1198561:1198724:-	0	-
#Deleted in new
chrX	1198800	1199145	ENSG00000205755.11|CRLF2|pc|chrX:1198800:1199145:-	0	-
#Deleted in new
chrX	119922693	119922840	ENSG00000101882.9|NKAP|pc|chrX:119922693:119922840:-	0	-
#Deleted in new
chrX	120036235	120036532	ENSG00000258545.5|RHOXF1-AS1|lncRNA|chrX:120036235:120036532:+	0	+
#Partially deleted in new
chrX	120070671	120072845	ENSG00000203989.4|RHOXF2B|pc|chrX:120070671:120072845:-	0	-
#Deleted in new
chrX	120117641	120117709	ENSG00000228139.1|LINC01402|lncRNA|chrX:120117641:120117709:-	0	-
#Deleted in new
chrX	120117861	120117911	ENSG00000228139.1|LINC01402|lncRNA|chrX:120117861:120117911:-	0	-
#Deleted in new
chrX	120119539	120119700	ENSG00000228139.1|LINC01402|lncRNA|chrX:120119539:120119700:-	0	-
#Deleted in new
chrX	120126944	120127100	ENSG00000258545.5|RHOXF1-AS1|lncRNA|chrX:120126944:120127100:+	0	+
#Deleted in new
chrX	120138997	120139119	ENSG00000258545.5|RHOXF1-AS1|lncRNA|chrX:120138997:120139119:+	0	+
#Deleted in new
chrX	120143722	120143900	ENSG00000258545.5|RHOXF1-AS1|lncRNA|chrX:120143722:120143900:+	0	+
#Deleted in new
chrX	120145637	120146854	ENSG00000258545.5|RHOXF1-AS1|lncRNA|chrX:120145637:120146854:+	0	+
#Partially deleted in new
chrX	120163457	120165630	ENSG00000131721.5|RHOXF2|pc|chrX:120163457:120165630:+	0	+
#Deleted in new
chrX	1202401	1202535	ENSG00000205755.11|CRLF2|pc|chrX:1202401:1202535:-	0	-
#Deleted in new
chrX	120571175	120572000	ENSG00000158290.16|CUL4B|pc|chrX:120571175:120572000:-	0	-
#Deleted in new
chrX	120574550	120574630	ENSG00000158290.16|CUL4B|pc|chrX:120574550:120574630:-	0	-
#Deleted in new
chrX	120575405	120575524	ENSG00000158290.16|CUL4B|pc|chrX:120575405:120575524:-	0	-
#Deleted in new
chrX	120575405	120575794	ENSG00000158290.16|CUL4B|pc|chrX:120575405:120575794:-	0	-
#Partially deleted in new
chrX	120594080	120594272	ENSG00000232119.7|MCTS1|pc|chrX:120594080:120594272:+	0	+
#Deleted in new
chrX	120594923	120595068	ENSG00000232119.7|MCTS1|pc|chrX:120594923:120595068:+	0	+
#Deleted in new
chrX	120594950	120595068	ENSG00000232119.7|MCTS1|pc|chrX:120594950:120595068:+	0	+
#Deleted in new
chrX	1206432	1206599	ENSG00000205755.11|CRLF2|pc|chrX:1206432:1206599:-	0	-
#Duplicated in new
chrX	120874895	120875929	ENSG00000236446.3|CT47B1|pc|chrX:120874895:120875929:-	0	-
#Deleted in new
chrX	1208805	1208905	ENSG00000205755.11|CRLF2|pc|chrX:1208805:1208905:-	0	-
#Deleted in new
chrX	1208805	1208908	ENSG00000205755.11|CRLF2|pc|chrX:1208805:1208908:-	0	-
#Duplicated in new
chrX	120931300	120932301	ENSG00000226685.4|CT47A12|pc|chrX:120931300:120932301:-	0	-
#Deleted in new
chrX	1212555	1212634	ENSG00000205755.11|CRLF2|pc|chrX:1212555:1212634:-	0	-
#Deleted in new
chrX	1212555	1212637	ENSG00000205755.11|CRLF2|pc|chrX:1212555:1212637:-	0	-
#Deleted in new
chrX	1212555	1212723	ENSG00000205755.11|CRLF2|pc|chrX:1212555:1212723:-	0	-
#Deleted in new
chrX	1212555	1212750	ENSG00000205755.11|CRLF2|pc|chrX:1212555:1212750:-	0	-
#Deleted in new
chrX	12374943	12375133	ENSG00000223487.1|FRMPD4-AS1|lncRNA|chrX:12374943:12375133:-	0	-
#Deleted in new
chrX	123872625	123872983	ENSG00000237331.1|XIAP-AS1|lncRNA|chrX:123872625:123872983:-	0	-
#Deleted in new
chrX	123873808	123873932	ENSG00000237331.1|XIAP-AS1|lncRNA|chrX:123873808:123873932:-	0	-
#Deleted in new
chrX	123912759	123913016	ENSG00000101966.12|XIAP|pc|chrX:123912759:123913016:+	0	+
#Deleted in new
chrX	124003466	124003747	ENSG00000101972.18|STAG2|pc|chrX:124003466:124003747:+	0	+
#Partially deleted in new
chrX	124021366	124021431	ENSG00000101972.18|STAG2|pc|chrX:124021366:124021431:+	0	+
#Deleted in new
chrX	124026564	124026687	ENSG00000101972.18|STAG2|pc|chrX:124026564:124026687:+	0	+
#Deleted in new
chrX	124234572	124234671	ENSG00000183918.15|SH2D1A|pc|chrX:124234572:124234671:+	0	+
#Deleted in new
chrX	124246241	124246337	ENSG00000183918.15|SH2D1A|pc|chrX:124246241:124246337:+	0	+
#Deleted in new
chrX	124246248	124246337	ENSG00000282419.2|TEX13D|pc|chrX:124246248:124246337:+	0	+
#Duplicated in new
chrX	124335351	124336840	ENSG00000282419.2|TEX13D|pc|chrX:124335351:124336840:+	0	+
#Deleted in new
chrX	126004445	126006118	ENSG00000280223.1|AL645820.1|lncRNA|chrX:126004445:126006118:-	0	-
#Deleted in new
chrX	126109761	126109804	ENSG00000237208.1|AL445072.1|lncRNA|chrX:126109761:126109804:+	0	+
#Deleted in new
chrX	126109913	126110148	ENSG00000237208.1|AL445072.1|lncRNA|chrX:126109913:126110148:+	0	+
#Deleted in new
chrX	126115201	126115562	ENSG00000237208.1|AL445072.1|lncRNA|chrX:126115201:126115562:+	0	+
#Deleted in new
chrX	1268799	1268879	ENSG00000198223.16|CSF2RA|pc|chrX:1268799:1268879:+	0	+
#Deleted in new
chrX	1268807	1268879	ENSG00000198223.16|CSF2RA|pc|chrX:1268807:1268879:+	0	+
#Deleted in new
chrX	1268813	1268879	ENSG00000198223.16|CSF2RA|pc|chrX:1268813:1268879:+	0	+
#Deleted in new
chrX	1268817	1268879	ENSG00000198223.16|CSF2RA|pc|chrX:1268817:1268879:+	0	+
#Deleted in new
chrX	1268829	1268879	ENSG00000198223.16|CSF2RA|pc|chrX:1268829:1268879:+	0	+
#Deleted in new
chrX	1268831	1268879	ENSG00000198223.16|CSF2RA|pc|chrX:1268831:1268879:+	0	+
#Deleted in new
chrX	1268834	1268879	ENSG00000198223.16|CSF2RA|pc|chrX:1268834:1268879:+	0	+
#Deleted in new
chrX	1268844	1268879	ENSG00000198223.16|CSF2RA|pc|chrX:1268844:1268879:+	0	+
#Partially deleted in new
chrX	127392759	127394771	ENSG00000280275.1|Z82209.2|lncRNA|chrX:127392759:127394771:+	0	+
#Deleted in new
chrX	1274754	1274818	ENSG00000198223.16|CSF2RA|pc|chrX:1274754:1274818:+	0	+
#Deleted in new
chrX	1274754	1274842	ENSG00000198223.16|CSF2RA|pc|chrX:1274754:1274842:+	0	+
#Deleted in new
chrX	127660630	127662530	ENSG00000260683.1|AL591643.1|lncRNA|chrX:127660630:127662530:-	0	-
#Deleted in new
chrX	1281870	1282220	ENSG00000198223.16|CSF2RA|pc|chrX:1281870:1282220:+	0	+
#Deleted in new
chrX	1282408	1282560	ENSG00000198223.16|CSF2RA|pc|chrX:1282408:1282560:+	0	+
#Deleted in new
chrX	1282677	1282779	ENSG00000198223.16|CSF2RA|pc|chrX:1282677:1282779:+	0	+
#Deleted in new
chrX	1282685	1282779	ENSG00000198223.16|CSF2RA|pc|chrX:1282685:1282779:+	0	+
#Deleted in new
chrX	1285651	1285920	ENSG00000198223.16|CSF2RA|pc|chrX:1285651:1285920:+	0	+
#Deleted in new
chrX	1285777	1285920	ENSG00000198223.16|CSF2RA|pc|chrX:1285777:1285920:+	0	+
#Deleted in new
chrX	1287173	1287198	ENSG00000198223.16|CSF2RA|pc|chrX:1287173:1287198:+	0	+
#Deleted in new
chrX	1288518	1288640	ENSG00000198223.16|CSF2RA|pc|chrX:1288518:1288640:+	0	+
#Deleted in new
chrX	1288518	1288642	ENSG00000198223.16|CSF2RA|pc|chrX:1288518:1288642:+	0	+
#Deleted in new
chrX	1288597	1288642	ENSG00000198223.16|CSF2RA|pc|chrX:1288597:1288642:+	0	+
#Deleted in new
chrX	1288758	1288888	ENSG00000198223.16|CSF2RA|pc|chrX:1288758:1288888:+	0	+
#Deleted in new
chrX	1288758	1289105	ENSG00000198223.16|CSF2RA|pc|chrX:1288758:1289105:+	0	+
#Partially deleted in new
chrX	12902816	12903985	ENSG00000233338.1|TLR8-AS1|lncRNA|chrX:12902816:12903985:-	0	-
#Deleted in new
chrX	1290336	1290509	ENSG00000198223.16|CSF2RA|pc|chrX:1290336:1290509:+	0	+
#Deleted in new
chrX	1290452	1290509	ENSG00000198223.16|CSF2RA|pc|chrX:1290452:1290509:+	0	+
#Deleted in new
chrX	12908215	12908333	ENSG00000233338.1|TLR8-AS1|lncRNA|chrX:12908215:12908333:-	0	-
#Deleted in new
chrX	1294224	1294461	ENSG00000198223.16|CSF2RA|pc|chrX:1294224:1294461:+	0	+
#Deleted in new
chrX	1294327	1294395	ENSG00000198223.16|CSF2RA|pc|chrX:1294327:1294395:+	0	+
#Deleted in new
chrX	1294327	1294461	ENSG00000198223.16|CSF2RA|pc|chrX:1294327:1294461:+	0	+
#Deleted in new
chrX	1295426	1295456	ENSG00000198223.16|CSF2RA|pc|chrX:1295426:1295456:+	0	+
#Deleted in new
chrX	1295426	1295578	ENSG00000198223.16|CSF2RA|pc|chrX:1295426:1295578:+	0	+
#Partially deleted in new
chrX	129549647	129549917	ENSG00000122126.15|OCRL|pc|chrX:129549647:129549917:+	0	+
#Deleted in new
chrX	129869063	129869296	ENSG00000235189.1|AL034405.1|lncRNA|chrX:129869063:129869296:-	0	-
#Partially deleted in new
chrX	129913343	129913395	ENSG00000156697.12|UTP14A|pc|chrX:129913343:129913395:+	0	+
#Deleted in new
chrX	1300490	1300543	ENSG00000198223.16|CSF2RA|pc|chrX:1300490:1300543:+	0	+
#Deleted in new
chrX	1300490	1300626	ENSG00000198223.16|CSF2RA|pc|chrX:1300490:1300626:+	0	+
#Deleted in new
chrX	1302896	1302916	ENSG00000198223.16|CSF2RA|pc|chrX:1302896:1302916:+	0	+
#Deleted in new
chrX	1303260	1303362	ENSG00000198223.16|CSF2RA|pc|chrX:1303260:1303362:+	0	+
#Deleted in new
chrX	130349823	130349867	ENSG00000102078.15|SLC25A14|pc|chrX:130349823:130349867:+	0	+
#Partially deleted in new
chrX	130359046	130359139	ENSG00000102078.15|SLC25A14|pc|chrX:130359046:130359139:+	0	+
#Deleted in new
chrX	1303922	1304019	ENSG00000198223.16|CSF2RA|pc|chrX:1303922:1304019:+	0	+
#Partially deleted in new
chrX	13040479	13042949	ENSG00000187268.11|FAM9C|pc|chrX:13040479:13042949:-	0	-
#Deleted in new
chrX	13043728	13043857	ENSG00000187268.11|FAM9C|pc|chrX:13043728:13043857:-	0	-
#Deleted in new
chrX	13044539	13044602	ENSG00000187268.11|FAM9C|pc|chrX:13044539:13044602:-	0	-
#Deleted in new
chrX	13044539	13044681	ENSG00000187268.11|FAM9C|pc|chrX:13044539:13044681:-	0	-
#Deleted in new
chrX	13044539	13044682	ENSG00000187268.11|FAM9C|pc|chrX:13044539:13044682:-	0	-
#Deleted in new
chrX	1305445	1305527	ENSG00000198223.16|CSF2RA|pc|chrX:1305445:1305527:+	0	+
#Deleted in new
chrX	1305627	1305941	ENSG00000198223.16|CSF2RA|pc|chrX:1305627:1305941:+	0	+
#Partially deleted in new
chrX	13093659	13094573	ENSG00000261030.1|AC079171.1|lncRNA|chrX:13093659:13094573:+	0	+
#Deleted in new
chrX	1309401	1309638	ENSG00000198223.16|CSF2RA|pc|chrX:1309401:1309638:+	0	+
#Deleted in new
chrX	1309401	1309922	ENSG00000198223.16|CSF2RA|pc|chrX:1309401:1309922:+	0	+
#Deleted in new
chrX	1309401	1309924	ENSG00000198223.16|CSF2RA|pc|chrX:1309401:1309924:+	0	+
#Deleted in new
chrX	1309401	1309934	ENSG00000198223.16|CSF2RA|pc|chrX:1309401:1309934:+	0	+
#Deleted in new
chrX	1309401	1309935	ENSG00000198223.16|CSF2RA|pc|chrX:1309401:1309935:+	0	+
#Deleted in new
chrX	1309401	1310381	ENSG00000198223.16|CSF2RA|pc|chrX:1309401:1310381:+	0	+
#Deleted in new
chrX	1309823	1309922	ENSG00000198223.16|CSF2RA|pc|chrX:1309823:1309922:+	0	+
#Deleted in new
chrX	1309839	1309922	ENSG00000198223.16|CSF2RA|pc|chrX:1309839:1309922:+	0	+
#Deleted in new
chrX	131299650	131299770	ENSG00000147255.18|IGSF1|pc|chrX:131299650:131299770:-	0	-
#Partially deleted in new
chrX	131389016	131389148	ENSG00000147255.18|IGSF1|pc|chrX:131389016:131389148:-	0	-
#Deleted in new
chrX	131578667	131578899	ENSG00000147255.18|IGSF1|pc|chrX:131578667:131578899:-	0	-
#Deleted in new
chrX	131691529	131692636	ENSG00000213468.5|FIRRE|lncRNA|chrX:131691529:131692636:-	0	-
#Deleted in new
chrX	131702651	131703518	ENSG00000213468.5|FIRRE|lncRNA|chrX:131702651:131703518:-	0	-
#Deleted in new
chrX	131709497	131709556	ENSG00000213468.5|FIRRE|lncRNA|chrX:131709497:131709556:-	0	-
#Deleted in new
chrX	131755597	131755666	ENSG00000213468.5|FIRRE|lncRNA|chrX:131755597:131755666:-	0	-
#Deleted in new
chrX	131755597	131755746	ENSG00000213468.5|FIRRE|lncRNA|chrX:131755597:131755746:-	0	-
#Deleted in new
chrX	131756610	131756709	ENSG00000213468.5|FIRRE|lncRNA|chrX:131756610:131756709:-	0	-
#Deleted in new
chrX	131768548	131768696	ENSG00000213468.5|FIRRE|lncRNA|chrX:131768548:131768696:-	0	-
#Deleted in new
chrX	131794323	131794466	ENSG00000213468.5|FIRRE|lncRNA|chrX:131794323:131794466:-	0	-
#Deleted in new
chrX	131804971	131805037	ENSG00000213468.5|FIRRE|lncRNA|chrX:131804971:131805037:-	0	-
#Deleted in new
chrX	131825221	131825365	ENSG00000213468.5|FIRRE|lncRNA|chrX:131825221:131825365:-	0	-
#Deleted in new
chrX	131830291	131830643	ENSG00000213468.5|FIRRE|lncRNA|chrX:131830291:131830643:-	0	-
#Deleted in new
chrX	132055455	132055521	ENSG00000134602.15|STK26|pc|chrX:132055455:132055521:+	0	+
#Deleted in new
chrX	132411189	132411382	ENSG00000076770.14|MBNL3|pc|chrX:132411189:132411382:-	0	-
#Partially deleted in new
chrX	132429812	132432862	ENSG00000232160.6|RAP2C-AS1|lncRNA|chrX:132429812:132432862:+	0	+
#Deleted in new
chrX	13303319	13303392	ENSG00000235385.1|LINC02154|lncRNA|chrX:13303319:13303392:-	0	-
#Deleted in new
chrX	13303319	13303452	ENSG00000235385.1|LINC02154|lncRNA|chrX:13303319:13303452:-	0	-
#Deleted in new
chrX	133090112	133090226	ENSG00000134588.12|USP26|pc|chrX:133090112:133090226:-	0	-
#Partially deleted in new
chrX	13310855	13310922	ENSG00000231216.1|GS1-600G8.3|lncRNA|chrX:13310855:13310922:+	0	+
#Deleted in new
chrX	13311701	13311713	ENSG00000231216.1|GS1-600G8.3|lncRNA|chrX:13311701:13311713:+	0	+
#Deleted in new
chrX	13311832	13311858	ENSG00000231216.1|GS1-600G8.3|lncRNA|chrX:13311832:13311858:+	0	+
#Deleted in new
chrX	13312060	13312131	ENSG00000231216.1|GS1-600G8.3|lncRNA|chrX:13312060:13312131:+	0	+
#Deleted in new
chrX	13312234	13312647	ENSG00000231216.1|GS1-600G8.3|lncRNA|chrX:13312234:13312647:+	0	+
#Deleted in new
chrX	13312761	13312871	ENSG00000231216.1|GS1-600G8.3|lncRNA|chrX:13312761:13312871:+	0	+
#Deleted in new
chrX	13313026	13313081	ENSG00000231216.1|GS1-600G8.3|lncRNA|chrX:13313026:13313081:+	0	+
#Deleted in new
chrX	13315524	13315611	ENSG00000231216.1|GS1-600G8.3|lncRNA|chrX:13315524:13315611:+	0	+
#Deleted in new
chrX	13316561	13316702	ENSG00000231216.1|GS1-600G8.3|lncRNA|chrX:13316561:13316702:+	0	+
#Deleted in new
chrX	13335240	13335312	ENSG00000226985.5|LINC01203|lncRNA|chrX:13335240:13335312:+	0	+
#Deleted in new
chrX	13335481	13335545	ENSG00000226985.5|LINC01203|lncRNA|chrX:13335481:13335545:+	0	+
#Deleted in new
chrX	13335658	13335697	ENSG00000226985.5|LINC01203|lncRNA|chrX:13335658:13335697:+	0	+
#Deleted in new
chrX	13336378	13336460	ENSG00000226985.5|LINC01203|lncRNA|chrX:13336378:13336460:+	0	+
#Deleted in new
chrX	13336380	13336460	ENSG00000226985.5|LINC01203|lncRNA|chrX:13336380:13336460:+	0	+
#Deleted in new
chrX	13339925	13340099	ENSG00000226985.5|LINC01203|lncRNA|chrX:13339925:13340099:+	0	+
#Deleted in new
chrX	1336615	1336926	ENSG00000185291.11|IL3RA|pc|chrX:1336615:1336926:+	0	+
#Deleted in new
chrX	1336795	1336926	ENSG00000185291.11|IL3RA|pc|chrX:1336795:1336926:+	0	+
#Deleted in new
chrX	133704204	133704273	ENSG00000147257.13|GPC3|pc|chrX:133704204:133704273:-	0	-
#Duplicated in new
chrX	13377187	13377335	ENSG00000226434.1|AC135371.1|lncRNA|chrX:13377187:13377335:+	0	+
#Deleted in new
chrX	1341727	1341829	ENSG00000185291.11|IL3RA|pc|chrX:1341727:1341829:+	0	+
#Deleted in new
chrX	134520481	134520513	ENSG00000165704.14|HPRT1|pc|chrX:134520481:134520513:+	0	+
#Deleted in new
chrX	1345315	1345434	ENSG00000185291.11|IL3RA|pc|chrX:1345315:1345434:+	0	+
#Deleted in new
chrX	134558379	134558497	ENSG00000227060.6|LINC00629|lncRNA|chrX:134558379:134558497:+	0	+
#Deleted in new
chrX	134559385	134559909	ENSG00000227060.6|LINC00629|lncRNA|chrX:134559385:134559909:+	0	+
#Deleted in new
chrX	134559385	134559923	ENSG00000227060.6|LINC00629|lncRNA|chrX:134559385:134559923:+	0	+
#Deleted in new
chrX	134599456	134599527	ENSG00000235813.1|AL672032.1|lncRNA|chrX:134599456:134599527:+	0	+
#Deleted in new
chrX	134600883	134600978	ENSG00000235813.1|AL672032.1|lncRNA|chrX:134600883:134600978:+	0	+
#Deleted in new
chrX	134809186	134809557	ENSG00000156500.14|FAM122C|pc|chrX:134809186:134809557:+	0	+
#Deleted in new
chrX	134809186	134811183	ENSG00000156500.14|FAM122C|pc|chrX:134809186:134811183:+	0	+
#Deleted in new
chrX	134839172	134839477	ENSG00000156500.14|FAM122C|pc|chrX:134839172:134839477:+	0	+
#Deleted in new
chrX	1348430	1348545	ENSG00000185291.11|IL3RA|pc|chrX:1348430:1348545:+	0	+
#Partially deleted in new
chrX	134899830	134899952	ENSG00000101928.12|MOSPD1|pc|chrX:134899830:134899952:-	0	-
#Deleted in new
chrX	134950199	134950535	ENSG00000236091.1|LINC02243|lncRNA|chrX:134950199:134950535:+	0	+
#Split in new
chrX	134990937	134992473	ENSG00000184785.5|SMIM10|pc|chrX:134990937:134992473:+	0	+
#Deleted in new
chrX	135059684	135059734	ENSG00000228372.7|SMIM10L2B-AS1|lncRNA|chrX:135059684:135059734:+	0	+
#Deleted in new
chrX	135116757	135116926	ENSG00000228372.7|SMIM10L2B-AS1|lncRNA|chrX:135116757:135116926:+	0	+
#Deleted in new
chrX	135119714	135119746	ENSG00000224107.5|ETDB|pc|chrX:135119714:135119746:-	0	-
#Deleted in new
chrX	135119733	135119971	ENSG00000224107.5|ETDB|pc|chrX:135119733:135119971:-	0	-
#Partially deleted in new
chrX	135120439	135120526	ENSG00000224107.5|ETDB|pc|chrX:135120439:135120526:-	0	-
#Deleted in new
chrX	135171077	135171398	ENSG00000169551.12|CT55|pc|chrX:135171077:135171398:-	0	-
#Deleted in new
chrX	1352321	1352506	ENSG00000185291.11|IL3RA|pc|chrX:1352321:1352506:+	0	+
#Deleted in new
chrX	135252060	135252098	ENSG00000238210.3|ETDA|pc|chrX:135252060:135252098:+	0	+
#Deleted in new
chrX	135252566	135252804	ENSG00000238210.3|ETDA|pc|chrX:135252566:135252804:+	0	+
#Deleted in new
chrX	135252791	135252823	ENSG00000238210.3|ETDA|pc|chrX:135252791:135252823:+	0	+
#Deleted in new
chrX	135255454	135255777	ENSG00000186376.14|ZNF75D|pc|chrX:135255454:135255777:-	0	-
#Duplicated in new
chrX	135285787	135287846	ENSG00000186376.14|ZNF75D|pc|chrX:135285787:135287846:-	0	-
#Duplicated in new
chrX	135285791	135287846	ENSG00000186376.14|ZNF75D|pc|chrX:135285791:135287846:-	0	-
#Deleted in new
chrX	135295767	135296033	ENSG00000186376.14|ZNF75D|pc|chrX:135295767:135296033:-	0	-
#Deleted in new
chrX	135295767	135296039	ENSG00000186376.14|ZNF75D|pc|chrX:135295767:135296039:-	0	-
#Duplicated in new
chrX	135341767	135344087	ENSG00000186376.14|ZNF75D|pc|chrX:135341767:135344087:-	0	-
#Deleted in new
chrX	1356220	1356331	ENSG00000185291.11|IL3RA|pc|chrX:1356220:1356331:+	0	+
#Deleted in new
chrX	1356220	1356336	ENSG00000185291.11|IL3RA|pc|chrX:1356220:1356336:+	0	+
#Deleted in new
chrX	135713452	135713690	ENSG00000268940.5|CT45A1|pc|chrX:135713452:135713690:+	0	+
#Duplicated in new
chrX	135722975	135723539	ENSG00000268940.5|CT45A1|pc|chrX:135722975:135723539:+	0	+
#Duplicated in new
chrX	135759845	135760409	ENSG00000269096.6|CT45A3|pc|chrX:135759845:135760409:-	0	-
#Deleted in new
chrX	135768107	135768191	ENSG00000269096.6|CT45A3|pc|chrX:135768107:135768191:-	0	-
#Deleted in new
chrX	135777129	135777693	ENSG00000228836.8|CT45A5|pc|chrX:135777129:135777693:-	0	-
#Deleted in new
chrX	135777479	135777693	ENSG00000228836.8|CT45A5|pc|chrX:135777479:135777693:-	0	-
#Deleted in new
chrX	135781560	135781729	ENSG00000228836.8|CT45A5|pc|chrX:135781560:135781729:-	0	-
#Deleted in new
chrX	135781560	135781735	ENSG00000228836.8|CT45A5|pc|chrX:135781560:135781735:-	0	-
#Deleted in new
chrX	135785219	135785298	ENSG00000228836.8|CT45A5|pc|chrX:135785219:135785298:-	0	-
#Deleted in new
chrX	135794705	135794955	ENSG00000278289.4|CT45A6|pc|chrX:135794705:135794955:-	0	-
#Deleted in new
chrX	135794741	135794955	ENSG00000278289.4|CT45A6|pc|chrX:135794741:135794955:-	0	-
#Deleted in new
chrX	135798824	135798999	ENSG00000278289.4|CT45A6|pc|chrX:135798824:135798999:-	0	-
#Deleted in new
chrX	135798824	135799001	ENSG00000278289.4|CT45A6|pc|chrX:135798824:135799001:-	0	-
#Deleted in new
chrX	135802510	135802656	ENSG00000278289.4|CT45A6|pc|chrX:135802510:135802656:-	0	-
#Deleted in new
chrX	135811667	135812231	ENSG00000271449.7|CT45A2|pc|chrX:135811667:135812231:-	0	-
#Deleted in new
chrX	135811980	135812231	ENSG00000271449.7|CT45A2|pc|chrX:135811980:135812231:-	0	-
#Deleted in new
chrX	135816096	135816265	ENSG00000271449.7|CT45A2|pc|chrX:135816096:135816265:-	0	-
#Deleted in new
chrX	135816096	135816271	ENSG00000271449.7|CT45A2|pc|chrX:135816096:135816271:-	0	-
#Deleted in new
chrX	135819773	135820012	ENSG00000271449.7|CT45A2|pc|chrX:135819773:135820012:-	0	-
#Deleted in new
chrX	135829246	135829497	ENSG00000273696.4|CT45A7|pc|chrX:135829246:135829497:-	0	-
#Deleted in new
chrX	135829439	135829497	ENSG00000273696.4|CT45A7|pc|chrX:135829439:135829497:-	0	-
#Deleted in new
chrX	135833364	135833539	ENSG00000273696.4|CT45A7|pc|chrX:135833364:135833539:-	0	-
#Deleted in new
chrX	135833364	135833541	ENSG00000273696.4|CT45A7|pc|chrX:135833364:135833541:-	0	-
#Deleted in new
chrX	135837041	135837268	ENSG00000273696.4|CT45A7|pc|chrX:135837041:135837268:-	0	-
#Deleted in new
chrX	135846498	135846749	ENSG00000278085.4|CT45A8|pc|chrX:135846498:135846749:-	0	-
#Deleted in new
chrX	135846499	135846749	ENSG00000278085.4|CT45A8|pc|chrX:135846499:135846749:-	0	-
#Deleted in new
chrX	135850614	135850789	ENSG00000278085.4|CT45A8|pc|chrX:135850614:135850789:-	0	-
#Deleted in new
chrX	135850614	135850791	ENSG00000278085.4|CT45A8|pc|chrX:135850614:135850791:-	0	-
#Deleted in new
chrX	135854299	135854538	ENSG00000278085.4|CT45A8|pc|chrX:135854299:135854538:-	0	-
#Deleted in new
chrX	135863775	135864028	ENSG00000270946.5|CT45A9|pc|chrX:135863775:135864028:-	0	-
#Deleted in new
chrX	135863778	135864028	ENSG00000270946.5|CT45A9|pc|chrX:135863778:135864028:-	0	-
#Deleted in new
chrX	135867892	135868067	ENSG00000270946.5|CT45A9|pc|chrX:135867892:135868067:-	0	-
#Deleted in new
chrX	135867892	135868069	ENSG00000270946.5|CT45A9|pc|chrX:135867892:135868069:-	0	-
#Deleted in new
chrX	135871573	135871812	ENSG00000270946.5|CT45A9|pc|chrX:135871573:135871812:-	0	-
#Deleted in new
chrX	135881062	135881315	ENSG00000269586.7|CT45A10|pc|chrX:135881062:135881315:-	0	-
#Deleted in new
chrX	135881257	135881315	ENSG00000269586.7|CT45A10|pc|chrX:135881257:135881315:-	0	-
#Deleted in new
chrX	135885175	135885350	ENSG00000269586.7|CT45A10|pc|chrX:135885175:135885350:-	0	-
#Deleted in new
chrX	135885175	135885352	ENSG00000269586.7|CT45A10|pc|chrX:135885175:135885352:-	0	-
#Deleted in new
chrX	1358860	1358887	ENSG00000185291.11|IL3RA|pc|chrX:1358860:1358887:+	0	+
#Deleted in new
chrX	135888847	135889086	ENSG00000269586.7|CT45A10|pc|chrX:135888847:135889086:-	0	-
#Deleted in new
chrX	135889204	135889267	ENSG00000181433.9|SAGE1|pc|chrX:135889204:135889267:+	0	+
#Deleted in new
chrX	135908088	135908229	ENSG00000181433.9|SAGE1|pc|chrX:135908088:135908229:+	0	+
#Deleted in new
chrX	136010119	136010297	ENSG00000198689.10|SLC9A6|pc|chrX:136010119:136010297:+	0	+
#Partially deleted in new
chrX	136148228	136148263	ENSG00000022267.16|FHL1|pc|chrX:136148228:136148263:+	0	+
#Duplicated in new
chrX	136167903	136168035	ENSG00000022267.16|FHL1|pc|chrX:136167903:136168035:+	0	+
#Partially deleted in new
chrX	136213219	136215013	ENSG00000129680.15|MAP7D3|pc|chrX:136213219:136215013:-	0	-
#Deleted in new
chrX	136221778	136221877	ENSG00000129680.15|MAP7D3|pc|chrX:136221778:136221877:-	0	-
#Deleted in new
chrX	136240381	136240486	ENSG00000129680.15|MAP7D3|pc|chrX:136240381:136240486:-	0	-
#Deleted in new
chrX	136300962	136301000	ENSG00000156920.10|ADGRG4|pc|chrX:136300962:136301000:+	0	+
#Deleted in new
chrX	1365137	1365252	ENSG00000185291.11|IL3RA|pc|chrX:1365137:1365252:+	0	+
#Deleted in new
chrX	13659686	13659768	ENSG00000176896.8|TCEANC|pc|chrX:13659686:13659768:+	0	+
#Deleted in new
chrX	13667683	13668169	ENSG00000176896.8|TCEANC|pc|chrX:13667683:13668169:+	0	+
#Deleted in new
chrX	13667683	13668383	ENSG00000176896.8|TCEANC|pc|chrX:13667683:13668383:+	0	+
#Deleted in new
chrX	13680488	13680598	ENSG00000176896.8|TCEANC|pc|chrX:13680488:13680598:+	0	+
#Deleted in new
chrX	13681138	13681964	ENSG00000176896.8|TCEANC|pc|chrX:13681138:13681964:+	0	+
#Deleted in new
chrX	136840930	136842850	ENSG00000232611.1|AL683813.1|lncRNA|chrX:136840930:136842850:-	0	-
#Split in new
chrX	136846699	136847797	ENSG00000232611.1|AL683813.1|lncRNA|chrX:136846699:136847797:-	0	-
#Partially deleted in new
chrX	13715496	13716089	ENSG00000196459.13|TRAPPC2|pc|chrX:13715496:13716089:-	0	-
#Deleted in new
chrX	137620477	137620592	ENSG00000283692.1|Z96074.1|lncRNA|chrX:137620477:137620592:+	0	+
#Deleted in new
chrX	137790247	137790355	ENSG00000283692.1|Z96074.1|lncRNA|chrX:137790247:137790355:+	0	+
#Deleted in new
chrX	1378658	1378764	ENSG00000185291.11|IL3RA|pc|chrX:1378658:1378764:+	0	+
#Deleted in new
chrX	137939269	137939307	ENSG00000283692.1|Z96074.1|lncRNA|chrX:137939269:137939307:+	0	+
#Deleted in new
chrX	137941409	137941496	ENSG00000283692.1|Z96074.1|lncRNA|chrX:137941409:137941496:+	0	+
#Deleted in new
chrX	1381022	1381104	ENSG00000185291.11|IL3RA|pc|chrX:1381022:1381104:+	0	+
#Deleted in new
chrX	1382390	1382685	ENSG00000185291.11|IL3RA|pc|chrX:1382390:1382685:+	0	+
#Deleted in new
chrX	1382390	1382689	ENSG00000185291.11|IL3RA|pc|chrX:1382390:1382689:+	0	+
#Partially deleted in new
chrX	138614730	138632986	ENSG00000129682.15|FGF13|pc|chrX:138614730:138632986:-	0	-
#Deleted in new
chrX	138990507	138990567	ENSG00000129682.15|FGF13|pc|chrX:138990507:138990567:-	0	-
#Deleted in new
chrX	138990507	138990617	ENSG00000129682.15|FGF13|pc|chrX:138990507:138990617:-	0	-
#Deleted in new
chrX	1390191	1390290	ENSG00000169100.13|SLC25A6|pc|chrX:1390191:1390290:-	0	-
#Deleted in new
chrX	1390191	1390293	ENSG00000169100.13|SLC25A6|pc|chrX:1390191:1390293:-	0	-
#Deleted in new
chrX	1396426	1396648	ENSG00000236871.7|LINC00106|lncRNA|chrX:1396426:1396648:+	0	+
#Deleted in new
chrX	1397024	1397224	ENSG00000236871.7|LINC00106|lncRNA|chrX:1397024:1397224:+	0	+
#Partially deleted in new
chrX	13980065	13980478	ENSG00000212663.2|AC003035.1|lncRNA|chrX:13980065:13980478:-	0	-
#Deleted in new
chrX	1398824	1398958	ENSG00000236871.7|LINC00106|lncRNA|chrX:1398824:1398958:+	0	+
#Deleted in new
chrX	13988689	13988820	ENSG00000212663.2|AC003035.1|lncRNA|chrX:13988689:13988820:-	0	-
#Deleted in new
chrX	1399366	1399402	ENSG00000236871.7|LINC00106|lncRNA|chrX:1399366:1399402:+	0	+
#Deleted in new
chrX	1401768	1402225	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1401768:1402225:+	0	+
#Deleted in new
chrX	1401810	1402225	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1401810:1402225:+	0	+
#Deleted in new
chrX	1402042	1402225	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1402042:1402225:+	0	+
#Deleted in new
chrX	1403138	1403489	ENSG00000169093.15|ASMTL|pc|chrX:1403138:1403489:-	0	-
#Deleted in new
chrX	1403140	1403489	ENSG00000169093.15|ASMTL|pc|chrX:1403140:1403489:-	0	-
#Deleted in new
chrX	1403376	1403493	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1403376:1403493:+	0	+
#Deleted in new
chrX	1403458	1403585	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1403458:1403585:+	0	+
#Deleted in new
chrX	1403460	1403585	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1403460:1403585:+	0	+
#Deleted in new
chrX	1403509	1403585	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1403509:1403585:+	0	+
#Deleted in new
chrX	140687441	140687528	ENSG00000230668.1|AL844175.1|lncRNA|chrX:140687441:140687528:-	0	-
#Deleted in new
chrX	140687667	140687705	ENSG00000230668.1|AL844175.1|lncRNA|chrX:140687667:140687705:-	0	-
#Deleted in new
chrX	140931737	140931860	ENSG00000229269.1|AL451048.1|lncRNA|chrX:140931737:140931860:+	0	+
#Deleted in new
chrX	140996648	140996688	ENSG00000229269.1|AL451048.1|lncRNA|chrX:140996648:140996688:+	0	+
#Deleted in new
chrX	140997394	140997448	ENSG00000229269.1|AL451048.1|lncRNA|chrX:140997394:140997448:+	0	+
#Partially deleted in new
chrX	141002590	141002783	ENSG00000227234.1|SPANXB1|pc|chrX:141002590:141002783:+	0	+
#Deleted in new
chrX	141003430	141003706	ENSG00000227234.1|SPANXB1|pc|chrX:141003430:141003706:+	0	+
#Deleted in new
chrX	141241462	141241738	ENSG00000198573.6|SPANXC|pc|chrX:141241462:141241738:-	0	-
#Deleted in new
chrX	141242385	141242496	ENSG00000198573.6|SPANXC|pc|chrX:141242385:141242496:-	0	-
#Deleted in new
chrX	1412731	1412854	ENSG00000169093.15|ASMTL|pc|chrX:1412731:1412854:-	0	-
#Deleted in new
chrX	1412742	1412888	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1412742:1412888:+	0	+
#Deleted in new
chrX	1412742	1413131	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1412742:1413131:+	0	+
#Deleted in new
chrX	1412790	1412888	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1412790:1412888:+	0	+
#Deleted in new
chrX	1413748	1414028	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1413748:1414028:+	0	+
#Deleted in new
chrX	1413761	1413915	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1413761:1413915:+	0	+
#Deleted in new
chrX	1413763	1414024	ENSG00000236017.8|ASMTL-AS1|lncRNA|chrX:1413763:1414024:+	0	+
#Deleted in new
chrX	141502848	141503239	ENSG00000277215.1|SPANXA2-OT1|lncRNA|chrX:141502848:141503239:+	0	+
#Deleted in new
chrX	141514711	141514829	ENSG00000277215.1|SPANXA2-OT1|lncRNA|chrX:141514711:141514829:+	0	+
#Deleted in new
chrX	141583673	141583959	ENSG00000198021.7|SPANXA1|pc|chrX:141583673:141583959:-	0	-
#Partially deleted in new
chrX	141584606	141585011	ENSG00000198021.7|SPANXA1|pc|chrX:141584606:141585011:-	0	-
#Deleted in new
chrX	141590486	141590772	ENSG00000203926.4|SPANXA2|pc|chrX:141590486:141590772:+	0	+
#Deleted in new
chrX	141625863	141626241	ENSG00000223438.1|AC235097.1|lncRNA|chrX:141625863:141626241:+	0	+
#Deleted in new
chrX	141626430	141626733	ENSG00000223438.1|AC235097.1|lncRNA|chrX:141626430:141626733:+	0	+
#Deleted in new
chrX	141697410	141697686	ENSG00000196406.4|SPANXD|pc|chrX:141697410:141697686:-	0	-
#Deleted in new
chrX	1417972	1418116	ENSG00000169093.15|ASMTL|pc|chrX:1417972:1418116:-	0	-
#Deleted in new
chrX	141838315	141838438	ENSG00000165509.13|MAGEC3|pc|chrX:141838315:141838438:+	0	+
#Deleted in new
chrX	141865470	141865605	ENSG00000165509.13|MAGEC3|pc|chrX:141865470:141865605:+	0	+
#Deleted in new
chrX	141894665	141894814	ENSG00000165509.13|MAGEC3|pc|chrX:141894665:141894814:+	0	+
#Deleted in new
chrX	141895268	141895407	ENSG00000165509.13|MAGEC3|pc|chrX:141895268:141895407:+	0	+
#Deleted in new
chrX	141895484	141895559	ENSG00000165509.13|MAGEC3|pc|chrX:141895484:141895559:+	0	+
#Deleted in new
chrX	1418981	1419114	ENSG00000169093.15|ASMTL|pc|chrX:1418981:1419114:-	0	-
#Deleted in new
chrX	141903893	141903978	ENSG00000155495.8|MAGEC1|pc|chrX:141903893:141903978:+	0	+
#Deleted in new
chrX	141905408	141905547	ENSG00000155495.8|MAGEC1|pc|chrX:141905408:141905547:+	0	+
#Split in new
chrX	141905408	141909388	ENSG00000155495.8|MAGEC1|pc|chrX:141905408:141909388:+	0	+
#Deleted in new
chrX	1421657	1421842	ENSG00000169093.15|ASMTL|pc|chrX:1421657:1421842:-	0	-
#Deleted in new
chrX	1425524	1425687	ENSG00000169093.15|ASMTL|pc|chrX:1425524:1425687:-	0	-
#Deleted in new
chrX	143025917	143026092	ENSG00000189326.4|SPANXN4|pc|chrX:143025917:143026092:+	0	+
#Deleted in new
chrX	143025931	143026092	ENSG00000189326.4|SPANXN4|pc|chrX:143025931:143026092:+	0	+
#Deleted in new
chrX	143034024	143034280	ENSG00000189326.4|SPANXN4|pc|chrX:143034024:143034280:+	0	+
#Deleted in new
chrX	143034027	143034232	ENSG00000189326.4|SPANXN4|pc|chrX:143034027:143034232:+	0	+
#Deleted in new
chrX	143034508	143034702	ENSG00000189326.4|SPANXN4|pc|chrX:143034508:143034702:+	0	+
#Partially deleted in new
chrX	1431901	1432377	ENSG00000169093.15|ASMTL|pc|chrX:1431901:1432377:-	0	-
#Deleted in new
chrX	143284976	143285066	ENSG00000227303.1|AC239727.1|lncRNA|chrX:143284976:143285066:+	0	+
#Deleted in new
chrX	143359590	143359676	ENSG00000227303.1|AC239727.1|lncRNA|chrX:143359590:143359676:+	0	+
#Deleted in new
chrX	143387681	143387773	ENSG00000227303.1|AC239727.1|lncRNA|chrX:143387681:143387773:+	0	+
#Partially deleted in new
chrX	1435021	1435391	ENSG00000169093.15|ASMTL|pc|chrX:1435021:1435391:-	0	-
#Deleted in new
chrX	143508734	143509162	ENSG00000189252.4|SPANXN3|pc|chrX:143508734:143509162:-	0	-
#Deleted in new
chrX	143509608	143509737	ENSG00000227303.1|AC239727.1|lncRNA|chrX:143509608:143509737:+	0	+
#Deleted in new
chrX	143510127	143510191	ENSG00000227303.1|AC239727.1|lncRNA|chrX:143510127:143510191:+	0	+
#Deleted in new
chrX	143516641	143516803	ENSG00000227303.1|AC239727.1|lncRNA|chrX:143516641:143516803:+	0	+
#Deleted in new
chrX	143711954	143712499	ENSG00000268988.1|SPANXN2|pc|chrX:143711954:143712499:-	0	-
#Deleted in new
chrX	143757736	143757841	ENSG00000225970.1|AL500522.1|lncRNA|chrX:143757736:143757841:+	0	+
#Deleted in new
chrX	143826075	143826171	ENSG00000225970.1|AL500522.1|lncRNA|chrX:143826075:143826171:+	0	+
#Deleted in new
chrX	143828016	143828133	ENSG00000225970.1|AL500522.1|lncRNA|chrX:143828016:143828133:+	0	+
#Deleted in new
chrX	1439096	1439144	ENSG00000169093.15|ASMTL|pc|chrX:1439096:1439144:-	0	-
#Deleted in new
chrX	1441591	1442317	ENSG00000169093.15|ASMTL|pc|chrX:1441591:1442317:-	0	-
#Deleted in new
chrX	1442185	1442317	ENSG00000169093.15|ASMTL|pc|chrX:1442185:1442317:-	0	-
#Deleted in new
chrX	145232928	145233010	ENSG00000234712.1|AL713923.1|lncRNA|chrX:145232928:145233010:-	0	-
#Deleted in new
chrX	145233323	145233619	ENSG00000234712.1|AL713923.1|lncRNA|chrX:145233323:145233619:-	0	-
#Deleted in new
chrX	145255670	145256112	ENSG00000203923.4|SPANXN1|pc|chrX:145255670:145256112:+	0	+
#Deleted in new
chrX	1452747	1452872	ENSG00000169093.15|ASMTL|pc|chrX:1452747:1452872:-	0	-
#Deleted in new
chrX	1452747	1452873	ENSG00000169093.15|ASMTL|pc|chrX:1452747:1452873:-	0	-
#Deleted in new
chrX	1452747	1452929	ENSG00000169093.15|ASMTL|pc|chrX:1452747:1452929:-	0	-
#Partially deleted in new
chrX	145797374	145798439	ENSG00000279585.1|AL109653.2|lncRNA|chrX:145797374:145798439:+	0	+
#Partially deleted in new
chrX	1462571	1466582	ENSG00000182162.10|P2RY8|pc|chrX:1462571:1466582:-	0	-
#Deleted in new
chrX	147181063	147181241	ENSG00000284377.1|AL589669.1|lncRNA|chrX:147181063:147181241:+	0	+
#Deleted in new
chrX	147218219	147218294	ENSG00000284377.1|AL589669.1|lncRNA|chrX:147218219:147218294:+	0	+
#Deleted in new
chrX	147228400	147228558	ENSG00000284377.1|AL589669.1|lncRNA|chrX:147228400:147228558:+	0	+
#Deleted in new
chrX	147269008	147269109	ENSG00000284377.1|AL589669.1|lncRNA|chrX:147269008:147269109:+	0	+
#Deleted in new
chrX	147270900	147271894	ENSG00000284377.1|AL589669.1|lncRNA|chrX:147270900:147271894:+	0	+
#Deleted in new
chrX	147900177	147900299	ENSG00000227083.1|L29074.1|lncRNA|chrX:147900177:147900299:-	0	-
#Deleted in new
chrX	147901047	147901459	ENSG00000227083.1|L29074.1|lncRNA|chrX:147901047:147901459:-	0	-
#Deleted in new
chrX	147946940	147947179	ENSG00000236337.1|FMR1-IT1|lncRNA|chrX:147946940:147947179:+	0	+
#Partially deleted in new
chrX	147947479	147947583	ENSG00000236337.1|FMR1-IT1|lncRNA|chrX:147947479:147947583:+	0	+
#Deleted in new
chrX	147981328	147981679	ENSG00000176988.8|FMR1NB|pc|chrX:147981328:147981679:+	0	+
#Deleted in new
chrX	148025910	148026038	ENSG00000176988.8|FMR1NB|pc|chrX:148025910:148026038:+	0	+
#Deleted in new
chrX	14868922	14869043	ENSG00000181544.13|FANCB|pc|chrX:14868922:14869043:-	0	-
#Deleted in new
chrX	14868922	14869243	ENSG00000181544.13|FANCB|pc|chrX:14868922:14869243:-	0	-
#Deleted in new
chrX	148719090	148719231	ENSG00000155966.13|AFF2|pc|chrX:148719090:148719231:+	0	+
#Deleted in new
chrX	148837646	148837733	ENSG00000155966.13|AFF2|pc|chrX:148837646:148837733:+	0	+
#Deleted in new
chrX	14915433	14915588	ENSG00000130150.11|MOSPD2|pc|chrX:14915433:14915588:+	0	+
#Deleted in new
chrX	1494092	1494353	ENSG00000182162.10|P2RY8|pc|chrX:1494092:1494353:-	0	-
#Deleted in new
chrX	149499228	149499354	ENSG00000010404.17|IDS|pc|chrX:149499228:149499354:-	0	-
#Deleted in new
chrX	149502074	149502177	ENSG00000010404.17|IDS|pc|chrX:149502074:149502177:-	0	-
#Partially deleted in new
chrX	149502086	149502223	ENSG00000241489.7|AC244197.3|pc|chrX:149502086:149502223:-	0	-
#Deleted in new
chrX	149511508	149511620	ENSG00000238039.1|AC244197.2|lncRNA|chrX:149511508:149511620:-	0	-
#Deleted in new
chrX	149511533	149511620	ENSG00000010404.17|IDS|pc|chrX:149511533:149511620:-	0	-
#Deleted in new
chrX	149514628	149514662	ENSG00000010404.17|IDS|pc|chrX:149514628:149514662:-	0	-
#Deleted in new
chrX	149520944	149521096	ENSG00000010404.17|IDS|pc|chrX:149520944:149521096:-	0	-
#Duplicated in new
chrX	149525721	149526264	ENSG00000238039.1|AC244197.2|lncRNA|chrX:149525721:149526264:-	0	-
#Deleted in new
chrX	149527590	149528005	ENSG00000241769.7|LINC00893|lncRNA|chrX:149527590:149528005:-	0	-
#Deleted in new
chrX	149527594	149528358	ENSG00000241769.7|LINC00893|lncRNA|chrX:149527594:149528358:-	0	-
#Deleted in new
chrX	149527732	149527783	ENSG00000241769.7|LINC00893|lncRNA|chrX:149527732:149527783:-	0	-
#Deleted in new
chrX	149528071	149528358	ENSG00000241769.7|LINC00893|lncRNA|chrX:149528071:149528358:-	0	-
#Deleted in new
chrX	149529208	149529229	ENSG00000241769.7|LINC00893|lncRNA|chrX:149529208:149529229:-	0	-
#Deleted in new
chrX	149529366	149529428	ENSG00000241489.7|AC244197.3|pc|chrX:149529366:149529428:-	0	-
#Deleted in new
chrX	149529366	149529428	ENSG00000241769.7|LINC00893|lncRNA|chrX:149529366:149529428:-	0	-
#Deleted in new
chrX	149529512	149529593	ENSG00000241489.7|AC244197.3|pc|chrX:149529512:149529593:-	0	-
#Deleted in new
chrX	149529512	149529593	ENSG00000241769.7|LINC00893|lncRNA|chrX:149529512:149529593:-	0	-
#Partially deleted in new
chrX	149533629	149534374	ENSG00000241769.7|LINC00893|lncRNA|chrX:149533629:149534374:-	0	-
#Deleted in new
chrX	149533738	149533892	ENSG00000241769.7|LINC00893|lncRNA|chrX:149533738:149533892:-	0	-
#Deleted in new
chrX	149533865	149533987	ENSG00000241769.7|LINC00893|lncRNA|chrX:149533865:149533987:-	0	-
#Deleted in new
chrX	149533915	149534428	ENSG00000241769.7|LINC00893|lncRNA|chrX:149533915:149534428:-	0	-
#Deleted in new
chrX	149533987	149534374	ENSG00000241769.7|LINC00893|lncRNA|chrX:149533987:149534374:-	0	-
#Deleted in new
chrX	149534099	149534374	ENSG00000241769.7|LINC00893|lncRNA|chrX:149534099:149534374:-	0	-
#Deleted in new
chrX	149534203	149534347	ENSG00000241769.7|LINC00893|lncRNA|chrX:149534203:149534347:-	0	-
#Deleted in new
chrX	149534203	149534374	ENSG00000241769.7|LINC00893|lncRNA|chrX:149534203:149534374:-	0	-
#Deleted in new
chrX	149534223	149534374	ENSG00000241769.7|LINC00893|lncRNA|chrX:149534223:149534374:-	0	-
#Deleted in new
chrX	149535935	149536213	ENSG00000241769.7|LINC00893|lncRNA|chrX:149535935:149536213:-	0	-
#Deleted in new
chrX	149535946	149535982	ENSG00000241769.7|LINC00893|lncRNA|chrX:149535946:149535982:-	0	-
#Deleted in new
chrX	149536043	149536255	ENSG00000241769.7|LINC00893|lncRNA|chrX:149536043:149536255:-	0	-
#Deleted in new
chrX	149536172	149536255	ENSG00000241769.7|LINC00893|lncRNA|chrX:149536172:149536255:-	0	-
#Deleted in new
chrX	149536173	149536213	ENSG00000241769.7|LINC00893|lncRNA|chrX:149536173:149536213:-	0	-
#Deleted in new
chrX	149536173	149536255	ENSG00000241769.7|LINC00893|lncRNA|chrX:149536173:149536255:-	0	-
#Deleted in new
chrX	149537632	149537742	ENSG00000241769.7|LINC00893|lncRNA|chrX:149537632:149537742:-	0	-
#Deleted in new
chrX	149537632	149537778	ENSG00000241769.7|LINC00893|lncRNA|chrX:149537632:149537778:-	0	-
#Deleted in new
chrX	149538114	149538172	ENSG00000241769.7|LINC00893|lncRNA|chrX:149538114:149538172:-	0	-
#Deleted in new
chrX	149538723	149538906	ENSG00000241769.7|LINC00893|lncRNA|chrX:149538723:149538906:-	0	-
#Deleted in new
chrX	149539700	149539752	ENSG00000241769.7|LINC00893|lncRNA|chrX:149539700:149539752:-	0	-
#Deleted in new
chrX	149540354	149540455	ENSG00000197620.10|CXorf40A|pc|chrX:149540354:149540455:+	0	+
#Deleted in new
chrX	149540372	149540454	ENSG00000241769.7|LINC00893|lncRNA|chrX:149540372:149540454:-	0	-
#Deleted in new
chrX	149540629	149540799	ENSG00000197620.10|CXorf40A|pc|chrX:149540629:149540799:+	0	+
#Partially deleted in new
chrX	149540641	149542066	ENSG00000197620.10|CXorf40A|pc|chrX:149540641:149542066:+	0	+
#Deleted in new
chrX	149540694	149540791	ENSG00000241769.7|LINC00893|lncRNA|chrX:149540694:149540791:-	0	-
#Deleted in new
chrX	149540694	149540793	ENSG00000241769.7|LINC00893|lncRNA|chrX:149540694:149540793:-	0	-
#Deleted in new
chrX	149540694	149540813	ENSG00000241769.7|LINC00893|lncRNA|chrX:149540694:149540813:-	0	-
#Deleted in new
chrX	149540694	149540842	ENSG00000241769.7|LINC00893|lncRNA|chrX:149540694:149540842:-	0	-
#Deleted in new
chrX	149540694	149540902	ENSG00000241769.7|LINC00893|lncRNA|chrX:149540694:149540902:-	0	-
#Deleted in new
chrX	149540694	149540959	ENSG00000241769.7|LINC00893|lncRNA|chrX:149540694:149540959:-	0	-
#Deleted in new
chrX	149540740	149540799	ENSG00000197620.10|CXorf40A|pc|chrX:149540740:149540799:+	0	+
#Deleted in new
chrX	149540973	149541343	ENSG00000197620.10|CXorf40A|pc|chrX:149540973:149541343:+	0	+
#Deleted in new
chrX	149540974	149541343	ENSG00000197620.10|CXorf40A|pc|chrX:149540974:149541343:+	0	+
#Deleted in new
chrX	149540982	149541292	ENSG00000197620.10|CXorf40A|pc|chrX:149540982:149541292:+	0	+
#Deleted in new
chrX	149540986	149541343	ENSG00000197620.10|CXorf40A|pc|chrX:149540986:149541343:+	0	+
#Deleted in new
chrX	149541023	149541126	ENSG00000197620.10|CXorf40A|pc|chrX:149541023:149541126:+	0	+
#Deleted in new
chrX	149542018	149542050	ENSG00000197620.10|CXorf40A|pc|chrX:149542018:149542050:+	0	+
#Deleted in new
chrX	149542018	149542066	ENSG00000197620.10|CXorf40A|pc|chrX:149542018:149542066:+	0	+
#Deleted in new
chrX	149542018	149542085	ENSG00000197620.10|CXorf40A|pc|chrX:149542018:149542085:+	0	+
#Deleted in new
chrX	149544519	149544884	ENSG00000197620.10|CXorf40A|pc|chrX:149544519:149544884:+	0	+
#Duplicated in new
chrX	149549415	149550510	ENSG00000197620.10|CXorf40A|pc|chrX:149549415:149550510:+	0	+
#Duplicated in new
chrX	149581652	149583244	ENSG00000267978.5|MAGEA9B|pc|chrX:149581652:149583244:-	0	-
#Duplicated in new
chrX	149583319	149583388	ENSG00000267978.5|MAGEA9B|pc|chrX:149583319:149583388:-	0	-
#Deleted in new
chrX	149587361	149587444	ENSG00000267978.5|MAGEA9B|pc|chrX:149587361:149587444:-	0	-
#Deleted in new
chrX	149587393	149587452	ENSG00000267978.5|MAGEA9B|pc|chrX:149587393:149587452:-	0	-
#Deleted in new
chrX	149587393	149587453	ENSG00000267978.5|MAGEA9B|pc|chrX:149587393:149587453:-	0	-
#Partially deleted in new
chrX	149592514	149593299	ENSG00000268738.2|HSFX2|pc|chrX:149592514:149593299:-	0	-
#Partially deleted in new
chrX	149600302	149602220	ENSG00000269556.7|TMEM185A|pc|chrX:149600302:149602220:-	0	-
#Deleted in new
chrX	149606730	149606809	ENSG00000269556.7|TMEM185A|pc|chrX:149606730:149606809:-	0	-
#Deleted in new
chrX	149688823	149688984	ENSG00000185247.14|MAGEA11|pc|chrX:149688823:149688984:+	0	+
#Deleted in new
chrX	149688837	149688984	ENSG00000185247.14|MAGEA11|pc|chrX:149688837:149688984:+	0	+
#Deleted in new
chrX	149688909	149688984	ENSG00000185247.14|MAGEA11|pc|chrX:149688909:149688984:+	0	+
#Deleted in new
chrX	149711762	149711845	ENSG00000185247.14|MAGEA11|pc|chrX:149711762:149711845:+	0	+
#Deleted in new
chrX	149712024	149712162	ENSG00000185247.14|MAGEA11|pc|chrX:149712024:149712162:+	0	+
#Deleted in new
chrX	149712077	149712162	ENSG00000185247.14|MAGEA11|pc|chrX:149712077:149712162:+	0	+
#Duplicated in new
chrX	149774067	149775245	ENSG00000171116.7|HSFX1|pc|chrX:149774067:149775245:+	0	+
#Partially deleted in new
chrX	149776082	149776867	ENSG00000171116.7|HSFX1|pc|chrX:149776082:149776867:+	0	+
#Deleted in new
chrX	149781929	149781995	ENSG00000123584.7|MAGEA9|pc|chrX:149781929:149781995:+	0	+
#Deleted in new
chrX	149825707	149825816	ENSG00000280752.1|LINC00850|lncRNA|chrX:149825707:149825816:+	0	+
#Deleted in new
chrX	149857762	149857885	ENSG00000280752.1|LINC00850|lncRNA|chrX:149857762:149857885:+	0	+
#Deleted in new
chrX	149878835	149878996	ENSG00000230899.1|MAGEA8-AS1|lncRNA|chrX:149878835:149878996:-	0	-
#Deleted in new
chrX	149879265	149879358	ENSG00000230899.1|MAGEA8-AS1|lncRNA|chrX:149879265:149879358:-	0	-
#Deleted in new
chrX	149879346	149879799	ENSG00000280752.1|LINC00850|lncRNA|chrX:149879346:149879799:+	0	+
#Deleted in new
chrX	149879800	149879858	ENSG00000230899.1|MAGEA8-AS1|lncRNA|chrX:149879800:149879858:-	0	-
#Deleted in new
chrX	149880095	149880192	ENSG00000230899.1|MAGEA8-AS1|lncRNA|chrX:149880095:149880192:-	0	-
#Deleted in new
chrX	149881003	149881070	ENSG00000230899.1|MAGEA8-AS1|lncRNA|chrX:149881003:149881070:-	0	-
#Partially deleted in new
chrX	149881140	149881285	ENSG00000156009.9|MAGEA8|pc|chrX:149881140:149881285:+	0	+
#Partially deleted in new
chrX	149881194	149881285	ENSG00000156009.9|MAGEA8|pc|chrX:149881194:149881285:+	0	+
#Partially deleted in new
chrX	149881219	149881285	ENSG00000156009.9|MAGEA8|pc|chrX:149881219:149881285:+	0	+
#Partially deleted in new
chrX	149881220	149881285	ENSG00000156009.9|MAGEA8|pc|chrX:149881220:149881285:+	0	+
#Duplicated in new
chrX	149932196	149932767	ENSG00000197021.8|CXorf40B|pc|chrX:149932196:149932767:-	0	-
#Duplicated in new
chrX	149932197	149932767	ENSG00000197021.8|CXorf40B|pc|chrX:149932197:149932767:-	0	-
#Duplicated in new
chrX	149932200	149932767	ENSG00000197021.8|CXorf40B|pc|chrX:149932200:149932767:-	0	-
#Deleted in new
chrX	149934376	149934568	ENSG00000197021.8|CXorf40B|pc|chrX:149934376:149934568:-	0	-
#Deleted in new
chrX	149934376	149934573	ENSG00000197021.8|CXorf40B|pc|chrX:149934376:149934573:-	0	-
#Partially deleted in new
chrX	149938141	149938700	ENSG00000197021.8|CXorf40B|pc|chrX:149938141:149938700:-	0	-
#Deleted in new
chrX	149938192	149938435	ENSG00000197021.8|CXorf40B|pc|chrX:149938192:149938435:-	0	-
#Deleted in new
chrX	149938192	149938459	ENSG00000197021.8|CXorf40B|pc|chrX:149938192:149938459:-	0	-
#Deleted in new
chrX	149938192	149938461	ENSG00000197021.8|CXorf40B|pc|chrX:149938192:149938461:-	0	-
#Deleted in new
chrX	149938192	149938472	ENSG00000197021.8|CXorf40B|pc|chrX:149938192:149938472:-	0	-
#Deleted in new
chrX	149938192	149938811	ENSG00000197021.8|CXorf40B|pc|chrX:149938192:149938811:-	0	-
#Deleted in new
chrX	149938627	149938786	ENSG00000235703.5|LINC00894|lncRNA|chrX:149938627:149938786:+	0	+
#Deleted in new
chrX	149939738	149940111	ENSG00000235703.5|LINC00894|lncRNA|chrX:149939738:149940111:+	0	+
#Deleted in new
chrX	149940155	149940163	ENSG00000235703.5|LINC00894|lncRNA|chrX:149940155:149940163:+	0	+
#Duplicated in new
chrX	149940658	149940832	ENSG00000235703.5|LINC00894|lncRNA|chrX:149940658:149940832:+	0	+
#Deleted in new
chrX	149941789	149941847	ENSG00000235703.5|LINC00894|lncRNA|chrX:149941789:149941847:+	0	+
#Deleted in new
chrX	149943650	149943762	ENSG00000235703.5|LINC00894|lncRNA|chrX:149943650:149943762:+	0	+
#Deleted in new
chrX	149944017	149944100	ENSG00000235703.5|LINC00894|lncRNA|chrX:149944017:149944100:+	0	+
#Deleted in new
chrX	149945632	149947347	ENSG00000235703.5|LINC00894|lncRNA|chrX:149945632:149947347:+	0	+
#Deleted in new
chrX	149945857	149947347	ENSG00000235703.5|LINC00894|lncRNA|chrX:149945857:149947347:+	0	+
#Deleted in new
chrX	149945975	149946028	ENSG00000235703.5|LINC00894|lncRNA|chrX:149945975:149946028:+	0	+
#Deleted in new
chrX	149946241	149946938	ENSG00000235703.5|LINC00894|lncRNA|chrX:149946241:149946938:+	0	+
#Deleted in new
chrX	149946345	149946599	ENSG00000235703.5|LINC00894|lncRNA|chrX:149946345:149946599:+	0	+
#Deleted in new
chrX	149947173	149947217	ENSG00000235703.5|LINC00894|lncRNA|chrX:149947173:149947217:+	0	+
#Deleted in new
chrX	149947370	149948175	ENSG00000235703.5|LINC00894|lncRNA|chrX:149947370:149948175:+	0	+
#Deleted in new
chrX	149948077	149948175	ENSG00000235703.5|LINC00894|lncRNA|chrX:149948077:149948175:+	0	+
#Deleted in new
chrX	149948305	149948394	ENSG00000235703.5|LINC00894|lncRNA|chrX:149948305:149948394:+	0	+
#Deleted in new
chrX	149952349	149952906	ENSG00000235703.5|LINC00894|lncRNA|chrX:149952349:149952906:+	0	+
#Deleted in new
chrX	149952349	149953052	ENSG00000235703.5|LINC00894|lncRNA|chrX:149952349:149953052:+	0	+
#Partially deleted in new
chrX	150017498	150017644	ENSG00000235703.5|LINC00894|lncRNA|chrX:150017498:150017644:+	0	+
#Deleted in new
chrX	150223466	150223608	ENSG00000235703.5|LINC00894|lncRNA|chrX:150223466:150223608:+	0	+
#Deleted in new
chrX	150223991	150224113	ENSG00000235703.5|LINC00894|lncRNA|chrX:150223991:150224113:+	0	+
#Deleted in new
chrX	150420998	150421117	ENSG00000013619.13|MAMLD1|pc|chrX:150420998:150421117:+	0	+
#Deleted in new
chrX	150462771	150462846	ENSG00000013619.13|MAMLD1|pc|chrX:150462771:150462846:+	0	+
#Deleted in new
chrX	150735463	150735499	ENSG00000063601.16|MTMR1|pc|chrX:150735463:150735499:+	0	+
#Partially deleted in new
chrX	150751029	150751240	ENSG00000063601.16|MTMR1|pc|chrX:150751029:150751240:+	0	+
#Partially deleted in new
chrX	150751029	150751289	ENSG00000063601.16|MTMR1|pc|chrX:150751029:150751289:+	0	+
#Partially deleted in new
chrX	150776901	150777482	ENSG00000102181.20|CD99L2|pc|chrX:150776901:150777482:-	0	-
#Deleted in new
chrX	150814861	150814864	ENSG00000102181.20|CD99L2|pc|chrX:150814861:150814864:-	0	-
#Deleted in new
chrX	150814861	150814936	ENSG00000102181.20|CD99L2|pc|chrX:150814861:150814936:-	0	-
#Deleted in new
chrX	150814861	150814948	ENSG00000102181.20|CD99L2|pc|chrX:150814861:150814948:-	0	-
#Deleted in new
chrX	150814899	150814936	ENSG00000102181.20|CD99L2|pc|chrX:150814899:150814936:-	0	-
#Deleted in new
chrX	150816278	150816455	ENSG00000102181.20|CD99L2|pc|chrX:150816278:150816455:-	0	-
#Deleted in new
chrX	150828305	150829604	ENSG00000102181.20|CD99L2|pc|chrX:150828305:150829604:-	0	-
#Deleted in new
chrX	150915812	150915836	ENSG00000230153.5|AF274573.2|lncRNA|chrX:150915812:150915836:+	0	+
#Deleted in new
chrX	150917112	150917283	ENSG00000230153.5|AF274573.2|lncRNA|chrX:150917112:150917283:+	0	+
#Deleted in new
chrX	150917162	150917283	ENSG00000230153.5|AF274573.2|lncRNA|chrX:150917162:150917283:+	0	+
#Deleted in new
chrX	150919768	150919936	ENSG00000230153.5|AF274573.2|lncRNA|chrX:150919768:150919936:+	0	+
#Deleted in new
chrX	150919768	150919940	ENSG00000230153.5|AF274573.2|lncRNA|chrX:150919768:150919940:+	0	+
#Deleted in new
chrX	150980508	150980644	ENSG00000029993.14|HMGB3|pc|chrX:150980508:150980644:+	0	+
#Deleted in new
chrX	151497725	151497790	ENSG00000270052.1|BX546450.2|lncRNA|chrX:151497725:151497790:+	0	+
#Deleted in new
chrX	151563621	151563839	ENSG00000166049.10|PASD1|pc|chrX:151563621:151563839:+	0	+
#Deleted in new
chrX	151563728	151563839	ENSG00000166049.10|PASD1|pc|chrX:151563728:151563839:+	0	+
#Deleted in new
chrX	151625447	151625530	ENSG00000166049.10|PASD1|pc|chrX:151625447:151625530:+	0	+
#Deleted in new
chrX	151648614	151648702	ENSG00000166049.10|PASD1|pc|chrX:151648614:151648702:+	0	+
#Deleted in new
chrX	151659712	151659836	ENSG00000166049.10|PASD1|pc|chrX:151659712:151659836:+	0	+
#Deleted in new
chrX	151664118	151664348	ENSG00000166049.10|PASD1|pc|chrX:151664118:151664348:+	0	+
#Deleted in new
chrX	151671037	151671196	ENSG00000166049.10|PASD1|pc|chrX:151671037:151671196:+	0	+
#Partially deleted in new
chrX	151671572	151671779	ENSG00000166049.10|PASD1|pc|chrX:151671572:151671779:+	0	+
#Duplicated in new
chrX	151672182	151672661	ENSG00000166049.10|PASD1|pc|chrX:151672182:151672661:+	0	+
#Split in new
chrX	151672182	151674186	ENSG00000166049.10|PASD1|pc|chrX:151672182:151674186:+	0	+
#Deleted in new
chrX	151673927	151674186	ENSG00000166049.10|PASD1|pc|chrX:151673927:151674186:+	0	+
#Deleted in new
chrX	151907341	151907399	ENSG00000229967.1|AF274855.1|lncRNA|chrX:151907341:151907399:-	0	-
#Deleted in new
chrX	151909452	151909823	ENSG00000229967.1|AF274855.1|lncRNA|chrX:151909452:151909823:-	0	-
#Deleted in new
chrX	151911022	151911083	ENSG00000229967.1|AF274855.1|lncRNA|chrX:151911022:151911083:-	0	-
#Deleted in new
chrX	151911022	151911199	ENSG00000229967.1|AF274855.1|lncRNA|chrX:151911022:151911199:-	0	-
#Deleted in new
chrX	151911022	151911455	ENSG00000229967.1|AF274855.1|lncRNA|chrX:151911022:151911455:-	0	-
#Deleted in new
chrX	151912408	151912527	ENSG00000229967.1|AF274855.1|lncRNA|chrX:151912408:151912527:-	0	-
#Deleted in new
chrX	151912508	151912542	ENSG00000147381.11|MAGEA4|pc|chrX:151912508:151912542:+	0	+
#Deleted in new
chrX	151912791	151912954	ENSG00000229967.1|AF274855.1|lncRNA|chrX:151912791:151912954:-	0	-
#Deleted in new
chrX	151912801	151912969	ENSG00000147381.11|MAGEA4|pc|chrX:151912801:151912969:+	0	+
#Deleted in new
chrX	151912888	151912969	ENSG00000147381.11|MAGEA4|pc|chrX:151912888:151912969:+	0	+
#Deleted in new
chrX	151913462	151913588	ENSG00000147381.11|MAGEA4|pc|chrX:151913462:151913588:+	0	+
#Deleted in new
chrX	151913504	151913588	ENSG00000147381.11|MAGEA4|pc|chrX:151913504:151913588:+	0	+
#Deleted in new
chrX	151913882	151913968	ENSG00000229967.1|AF274855.1|lncRNA|chrX:151913882:151913968:-	0	-
#Deleted in new
chrX	151914151	151914276	ENSG00000147381.11|MAGEA4|pc|chrX:151914151:151914276:+	0	+
#Deleted in new
chrX	151914829	151914958	ENSG00000147381.11|MAGEA4|pc|chrX:151914829:151914958:+	0	+
#Partially deleted in new
chrX	151915507	151915637	ENSG00000147381.11|MAGEA4|pc|chrX:151915507:151915637:+	0	+
#Deleted in new
chrX	151916194	151916320	ENSG00000147381.11|MAGEA4|pc|chrX:151916194:151916320:+	0	+
#Partially deleted in new
chrX	151916873	151917002	ENSG00000147381.11|MAGEA4|pc|chrX:151916873:151917002:+	0	+
#Deleted in new
chrX	151917551	151917681	ENSG00000147381.11|MAGEA4|pc|chrX:151917551:151917681:+	0	+
#Deleted in new
chrX	151918226	151918356	ENSG00000147381.11|MAGEA4|pc|chrX:151918226:151918356:+	0	+
#Deleted in new
chrX	151918901	151919037	ENSG00000147381.11|MAGEA4|pc|chrX:151918901:151919037:+	0	+
#Deleted in new
chrX	152128340	152128357	ENSG00000266560.5|AF274856.1|lncRNA|chrX:152128340:152128357:-	0	-
#Deleted in new
chrX	152129488	152129613	ENSG00000266560.5|AF274856.1|lncRNA|chrX:152129488:152129613:-	0	-
#Deleted in new
chrX	152138474	152138493	ENSG00000266560.5|AF274856.1|lncRNA|chrX:152138474:152138493:-	0	-
#Deleted in new
chrX	152138474	152138510	ENSG00000124260.11|MAGEA10|pc|chrX:152138474:152138510:-	0	-
#Deleted in new
chrX	152138474	152138521	ENSG00000266560.5|AF274856.1|lncRNA|chrX:152138474:152138521:-	0	-
#Deleted in new
chrX	152138474	152138528	ENSG00000124260.11|MAGEA10|pc|chrX:152138474:152138528:-	0	-
#Deleted in new
chrX	152138474	152138540	ENSG00000124260.11|MAGEA10|pc|chrX:152138474:152138540:-	0	-
#Deleted in new
chrX	152138474	152138553	ENSG00000124260.11|MAGEA10|pc|chrX:152138474:152138553:-	0	-
#Deleted in new
chrX	152138474	152138556	ENSG00000266560.5|AF274856.1|lncRNA|chrX:152138474:152138556:-	0	-
#Deleted in new
chrX	152138474	152138561	ENSG00000124260.11|MAGEA10|pc|chrX:152138474:152138561:-	0	-
#Deleted in new
chrX	152138474	152138578	ENSG00000124260.11|MAGEA10|pc|chrX:152138474:152138578:-	0	-
#Deleted in new
chrX	152138882	152138934	ENSG00000231937.1|AC116666.1|lncRNA|chrX:152138882:152138934:+	0	+
#Deleted in new
chrX	152140014	152140071	ENSG00000231937.1|AC116666.1|lncRNA|chrX:152140014:152140071:+	0	+
#Deleted in new
chrX	152186807	152186857	ENSG00000231937.1|AC116666.1|lncRNA|chrX:152186807:152186857:+	0	+
#Partially deleted in new
chrX	15236527	15236600	ENSG00000102048.15|ASB9|pc|chrX:15236527:15236600:-	0	-
#Deleted in new
chrX	152389305	152389497	ENSG00000011677.12|GABRA3|pc|chrX:152389305:152389497:-	0	-
#Deleted in new
chrX	152698751	152698829	ENSG00000221867.8|MAGEA3|pc|chrX:152698751:152698829:+	0	+
#Deleted in new
chrX	152698766	152698829	ENSG00000221867.8|MAGEA3|pc|chrX:152698766:152698829:+	0	+
#Deleted in new
chrX	152708260	152708640	ENSG00000268902.3|CSAG2|pc|chrX:152708260:152708640:-	0	-
#Deleted in new
chrX	152708263	152708640	ENSG00000268902.3|CSAG2|pc|chrX:152708263:152708640:-	0	-
#Deleted in new
chrX	152708570	152708639	ENSG00000268902.3|CSAG2|pc|chrX:152708570:152708639:-	0	-
#Deleted in new
chrX	152708798	152709265	ENSG00000268902.3|CSAG2|pc|chrX:152708798:152709265:-	0	-
#Deleted in new
chrX	152708834	152709007	ENSG00000268902.3|CSAG2|pc|chrX:152708834:152709007:-	0	-
#Deleted in new
chrX	152708848	152709000	ENSG00000268902.3|CSAG2|pc|chrX:152708848:152709000:-	0	-
#Deleted in new
chrX	152708849	152709265	ENSG00000268902.3|CSAG2|pc|chrX:152708849:152709265:-	0	-
#Deleted in new
chrX	152709244	152709260	ENSG00000268902.3|CSAG2|pc|chrX:152709244:152709260:-	0	-
#Deleted in new
chrX	152709460	152709575	ENSG00000268902.3|CSAG2|pc|chrX:152709460:152709575:-	0	-
#Deleted in new
chrX	152713255	152713315	ENSG00000268902.3|CSAG2|pc|chrX:152713255:152713315:-	0	-
#Deleted in new
chrX	152714488	152714549	ENSG00000268902.3|CSAG2|pc|chrX:152714488:152714549:-	0	-
#Deleted in new
chrX	152714585	152714682	ENSG00000183305.13|MAGEA2B|pc|chrX:152714585:152714682:+	0	+
#Deleted in new
chrX	152714592	152714682	ENSG00000183305.13|MAGEA2B|pc|chrX:152714592:152714682:+	0	+
#Deleted in new
chrX	152714600	152714682	ENSG00000183305.13|MAGEA2B|pc|chrX:152714600:152714682:+	0	+
#Deleted in new
chrX	152714608	152714682	ENSG00000183305.13|MAGEA2B|pc|chrX:152714608:152714682:+	0	+
#Deleted in new
chrX	152714627	152714682	ENSG00000183305.13|MAGEA2B|pc|chrX:152714627:152714682:+	0	+
#Deleted in new
chrX	152714629	152714682	ENSG00000183305.13|MAGEA2B|pc|chrX:152714629:152714682:+	0	+
#Deleted in new
chrX	152714641	152714682	ENSG00000183305.13|MAGEA2B|pc|chrX:152714641:152714682:+	0	+
#Deleted in new
chrX	152714646	152714682	ENSG00000183305.13|MAGEA2B|pc|chrX:152714646:152714682:+	0	+
#Deleted in new
chrX	152714680	152714857	ENSG00000183305.13|MAGEA2B|pc|chrX:152714680:152714857:+	0	+
#Deleted in new
chrX	152714684	152714857	ENSG00000183305.13|MAGEA2B|pc|chrX:152714684:152714857:+	0	+
#Deleted in new
chrX	152714690	152715157	ENSG00000183305.13|MAGEA2B|pc|chrX:152714690:152715157:+	0	+
#Deleted in new
chrX	152714846	152714928	ENSG00000183305.13|MAGEA2B|pc|chrX:152714846:152714928:+	0	+
#Deleted in new
chrX	152714846	152715157	ENSG00000183305.13|MAGEA2B|pc|chrX:152714846:152715157:+	0	+
#Deleted in new
chrX	152715078	152715157	ENSG00000183305.13|MAGEA2B|pc|chrX:152715078:152715157:+	0	+
#Deleted in new
chrX	152727483	152727863	ENSG00000198930.12|CSAG1|pc|chrX:152727483:152727863:-	0	-
#Deleted in new
chrX	152727483	152728224	ENSG00000198930.12|CSAG1|pc|chrX:152727483:152728224:-	0	-
#Deleted in new
chrX	152727486	152727863	ENSG00000198930.12|CSAG1|pc|chrX:152727486:152727863:-	0	-
#Deleted in new
chrX	152728073	152728224	ENSG00000198930.12|CSAG1|pc|chrX:152728073:152728224:-	0	-
#Deleted in new
chrX	152728073	152728231	ENSG00000198930.12|CSAG1|pc|chrX:152728073:152728231:-	0	-
#Deleted in new
chrX	152732444	152732504	ENSG00000198930.12|CSAG1|pc|chrX:152732444:152732504:-	0	-
#Deleted in new
chrX	152733020	152733236	ENSG00000198930.12|CSAG1|pc|chrX:152733020:152733236:-	0	-
#Deleted in new
chrX	152733024	152733236	ENSG00000198930.12|CSAG1|pc|chrX:152733024:152733236:-	0	-
#Deleted in new
chrX	152733667	152733691	ENSG00000198930.12|CSAG1|pc|chrX:152733667:152733691:-	0	-
#Deleted in new
chrX	152733667	152733699	ENSG00000198930.12|CSAG1|pc|chrX:152733667:152733699:-	0	-
#Deleted in new
chrX	152733667	152733706	ENSG00000198930.12|CSAG1|pc|chrX:152733667:152733706:-	0	-
#Deleted in new
chrX	152733667	152733735	ENSG00000198930.12|CSAG1|pc|chrX:152733667:152733735:-	0	-
#Deleted in new
chrX	152733778	152733859	ENSG00000213401.9|MAGEA12|pc|chrX:152733778:152733859:+	0	+
#Deleted in new
chrX	152733861	152734034	ENSG00000213401.9|MAGEA12|pc|chrX:152733861:152734034:+	0	+
#Deleted in new
chrX	152746816	152747017	ENSG00000231447.1|AC244102.1|lncRNA|chrX:152746816:152747017:+	0	+
#Deleted in new
chrX	152747115	152747762	ENSG00000231447.1|AC244102.1|lncRNA|chrX:152747115:152747762:+	0	+
#Duplicated in new
chrX	152752393	152752513	ENSG00000268606.5|MAGEA2|pc|chrX:152752393:152752513:-	0	-
#Deleted in new
chrX	152753312	152753391	ENSG00000268606.5|MAGEA2|pc|chrX:152753312:152753391:-	0	-
#Deleted in new
chrX	152753541	152753623	ENSG00000268606.5|MAGEA2|pc|chrX:152753541:152753623:-	0	-
#Deleted in new
chrX	152753612	152753884	ENSG00000268606.5|MAGEA2|pc|chrX:152753612:152753884:-	0	-
#Deleted in new
chrX	152753787	152753840	ENSG00000268606.5|MAGEA2|pc|chrX:152753787:152753840:-	0	-
#Deleted in new
chrX	152753787	152753842	ENSG00000268606.5|MAGEA2|pc|chrX:152753787:152753842:-	0	-
#Deleted in new
chrX	152753787	152753878	ENSG00000268606.5|MAGEA2|pc|chrX:152753787:152753878:-	0	-
#Deleted in new
chrX	152753787	152753884	ENSG00000268606.5|MAGEA2|pc|chrX:152753787:152753884:-	0	-
#Deleted in new
chrX	152753920	152753981	ENSG00000268916.6|CSAG3|pc|chrX:152753920:152753981:+	0	+
#Deleted in new
chrX	152755154	152755214	ENSG00000268916.6|CSAG3|pc|chrX:152755154:152755214:+	0	+
#Deleted in new
chrX	152758906	152759021	ENSG00000268916.6|CSAG3|pc|chrX:152758906:152759021:+	0	+
#Deleted in new
chrX	152759217	152759633	ENSG00000268916.6|CSAG3|pc|chrX:152759217:152759633:+	0	+
#Deleted in new
chrX	152759217	152759684	ENSG00000268916.6|CSAG3|pc|chrX:152759217:152759684:+	0	+
#Deleted in new
chrX	152759475	152759648	ENSG00000268916.6|CSAG3|pc|chrX:152759475:152759648:+	0	+
#Deleted in new
chrX	152759842	152760219	ENSG00000268916.6|CSAG3|pc|chrX:152759842:152760219:+	0	+
#Deleted in new
chrX	152759842	152760222	ENSG00000268916.6|CSAG3|pc|chrX:152759842:152760222:+	0	+
#Deleted in new
chrX	152769218	152769277	ENSG00000197172.10|MAGEA6|pc|chrX:152769218:152769277:-	0	-
#Deleted in new
chrX	152769653	152769677	ENSG00000197172.10|MAGEA6|pc|chrX:152769653:152769677:-	0	-
#Deleted in new
chrX	152769653	152769716	ENSG00000197172.10|MAGEA6|pc|chrX:152769653:152769716:-	0	-
#Deleted in new
chrX	152769653	152769747	ENSG00000197172.10|MAGEA6|pc|chrX:152769653:152769747:-	0	-
#Deleted in new
chrX	15291909	15292027	ENSG00000165192.13|ASB11|pc|chrX:15291909:15292027:-	0	-
#Partially deleted in new
chrX	152931671	152931776	ENSG00000147394.18|ZNF185|pc|chrX:152931671:152931776:+	0	+
#Deleted in new
chrX	152936417	152936513	ENSG00000147394.18|ZNF185|pc|chrX:152936417:152936513:+	0	+
#Deleted in new
chrX	152938073	152938163	ENSG00000147394.18|ZNF185|pc|chrX:152938073:152938163:+	0	+
#Deleted in new
chrX	153225648	153225801	ENSG00000273877.4|AC236972.3|lncRNA|chrX:153225648:153225801:+	0	+
#Deleted in new
chrX	153225658	153225801	ENSG00000273877.4|AC236972.3|lncRNA|chrX:153225658:153225801:+	0	+
#Deleted in new
chrX	153225884	153226034	ENSG00000273877.4|AC236972.3|lncRNA|chrX:153225884:153226034:+	0	+
#Deleted in new
chrX	153225930	153226034	ENSG00000273877.4|AC236972.3|lncRNA|chrX:153225930:153226034:+	0	+
#Deleted in new
chrX	153226980	153227090	ENSG00000273877.4|AC236972.3|lncRNA|chrX:153226980:153227090:+	0	+
#Partially deleted in new
chrX	15326949	15327255	ENSG00000165195.15|PIGA|pc|chrX:15326949:15327255:-	0	-
#Deleted in new
chrX	153357190	153357256	ENSG00000063587.13|ZNF275|pc|chrX:153357190:153357256:+	0	+
#Partially deleted in new
chrX	153359698	153360110	ENSG00000063587.13|ZNF275|pc|chrX:153359698:153360110:+	0	+
#Deleted in new
chrX	153461559	153462067	ENSG00000213397.10|HAUS7|pc|chrX:153461559:153462067:-	0	-
#Deleted in new
chrX	153462037	153462067	ENSG00000213397.10|HAUS7|pc|chrX:153462037:153462067:-	0	-
#Deleted in new
chrX	153597421	153597706	ENSG00000262919.7|FAM58A|pc|chrX:153597421:153597706:-	0	-
#Deleted in new
chrX	153604125	153604353	ENSG00000260081.1|AF274858.3|lncRNA|chrX:153604125:153604353:+	0	+
#Deleted in new
chrX	1536920	1537107	ENSG00000182162.10|P2RY8|pc|chrX:1536920:1537107:-	0	-
#Deleted in new
chrX	153760490	153760613	ENSG00000232725.1|U52111.1|lncRNA|chrX:153760490:153760613:-	0	-
#Deleted in new
chrX	153763792	153763817	ENSG00000232725.1|U52111.1|lncRNA|chrX:153763792:153763817:-	0	-
#Deleted in new
chrX	153880281	153880363	ENSG00000198910.12|L1CAM|pc|chrX:153880281:153880363:-	0	-
#Deleted in new
chrX	153888496	153888990	ENSG00000273769.5|LCA10|lncRNA|chrX:153888496:153888990:+	0	+
#Deleted in new
chrX	153902530	153902892	ENSG00000126895.13|AVPR2|pc|chrX:153902530:153902892:+	0	+
#Partially deleted in new
chrX	153922123	153922248	ENSG00000089820.15|ARHGAP4|pc|chrX:153922123:153922248:-	0	-
#Partially deleted in new
chrX	153933659	153934001	ENSG00000102030.15|NAA10|pc|chrX:153933659:153934001:-	0	-
#Deleted in new
chrX	153935998	153936105	ENSG00000102032.12|RENBP|pc|chrX:153935998:153936105:-	0	-
#Deleted in new
chrX	153936003	153936105	ENSG00000102032.12|RENBP|pc|chrX:153936003:153936105:-	0	-
#Partially deleted in new
chrX	153937091	153937188	ENSG00000102032.12|RENBP|pc|chrX:153937091:153937188:-	0	-
#Deleted in new
chrX	153980605	153980623	ENSG00000177854.7|TMEM187|pc|chrX:153980605:153980623:+	0	+
#Partially deleted in new
chrX	153981849	153982161	ENSG00000177854.7|TMEM187|pc|chrX:153981849:153982161:+	0	+
#Partially deleted in new
chrX	153981849	153982260	ENSG00000177854.7|TMEM187|pc|chrX:153981849:153982260:+	0	+
#Partially deleted in new
chrX	153981849	153983195	ENSG00000177854.7|TMEM187|pc|chrX:153981849:153983195:+	0	+
#Partially deleted in new
chrX	154033438	154034174	ENSG00000169057.21|MECP2|pc|chrX:154033438:154034174:-	0	-
#Deleted in new
chrX	154033923	154034174	ENSG00000169057.21|MECP2|pc|chrX:154033923:154034174:-	0	-
#Deleted in new
chrX	154033993	154034016	ENSG00000169057.21|MECP2|pc|chrX:154033993:154034016:-	0	-
#Deleted in new
chrX	154039791	154039903	ENSG00000169057.21|MECP2|pc|chrX:154039791:154039903:-	0	-
#Deleted in new
chrX	154039791	154040103	ENSG00000169057.21|MECP2|pc|chrX:154039791:154040103:-	0	-
#Deleted in new
chrX	154048181	154048279	ENSG00000169057.21|MECP2|pc|chrX:154048181:154048279:-	0	-
#Partially deleted in new
chrX	154048516	154049479	ENSG00000169057.21|MECP2|pc|chrX:154048516:154049479:-	0	-
#Partially deleted in new
chrX	154048516	154049481	ENSG00000169057.21|MECP2|pc|chrX:154048516:154049481:-	0	-
#Deleted in new
chrX	154056940	154057254	ENSG00000169057.21|MECP2|pc|chrX:154056940:154057254:-	0	-
#Deleted in new
chrX	154057147	154057179	ENSG00000169057.21|MECP2|pc|chrX:154057147:154057179:-	0	-
#Deleted in new
chrX	154057742	154057810	ENSG00000169057.21|MECP2|pc|chrX:154057742:154057810:-	0	-
#Deleted in new
chrX	154057742	154057842	ENSG00000169057.21|MECP2|pc|chrX:154057742:154057842:-	0	-
#Deleted in new
chrX	154058398	154058566	ENSG00000169057.21|MECP2|pc|chrX:154058398:154058566:-	0	-
#Deleted in new
chrX	154104780	154105038	ENSG00000169057.21|MECP2|pc|chrX:154104780:154105038:-	0	-
#Deleted in new
chrX	154137056	154137103	ENSG00000169057.21|MECP2|pc|chrX:154137056:154137103:-	0	-
#Duplicated in new
chrX	154182595	154182789	ENSG00000268221.5|OPN1MW|pc|chrX:154182595:154182789:+	0	+
#Duplicated in new
chrX	154257537	154257731	ENSG00000269433.3|OPN1MW3|pc|chrX:154257537:154257731:+	0	+
#Deleted in new
chrX	154289730	154289820	ENSG00000278057.4|TEX28|pc|chrX:154289730:154289820:-	0	-
#Deleted in new
chrX	154292105	154292117	ENSG00000278057.4|TEX28|pc|chrX:154292105:154292117:-	0	-
#Deleted in new
chrX	154292105	154292205	ENSG00000278057.4|TEX28|pc|chrX:154292105:154292205:-	0	-
#Deleted in new
chrX	15429374	15429848	ENSG00000087842.10|PIR|pc|chrX:15429374:15429848:-	0	-
#Deleted in new
chrX	154295029	154295085	ENSG00000278057.4|TEX28|pc|chrX:154295029:154295085:-	0	-
#Deleted in new
chrX	154295133	154295211	ENSG00000278057.4|TEX28|pc|chrX:154295133:154295211:-	0	-
#Deleted in new
chrX	154295686	154295853	ENSG00000278057.4|TEX28|pc|chrX:154295686:154295853:-	0	-
#Deleted in new
chrX	154327375	154327426	ENSG00000007350.16|TKTL1|pc|chrX:154327375:154327426:+	0	+
#Deleted in new
chrX	154333959	154334274	ENSG00000231830.1|AC245140.1|lncRNA|chrX:154333959:154334274:-	0	-
#Deleted in new
chrX	154335011	154335037	ENSG00000231830.1|AC245140.1|lncRNA|chrX:154335011:154335037:-	0	-
#Deleted in new
chrX	154389954	154389972	ENSG00000147403.16|RPL10|pc|chrX:154389954:154389972:+	0	+
#Deleted in new
chrX	154397153	154397376	ENSG00000147403.16|RPL10|pc|chrX:154397153:154397376:+	0	+
#Deleted in new
chrX	154397748	154397864	ENSG00000147403.16|RPL10|pc|chrX:154397748:154397864:+	0	+
#Split in new
chrX	154400701	154402339	ENSG00000147403.16|RPL10|pc|chrX:154400701:154402339:+	0	+
#Split in new
chrX	154401237	154402841	ENSG00000013563.13|DNASE1L1|pc|chrX:154401237:154402841:-	0	-
#Partially deleted in new
chrX	154401757	154402841	ENSG00000013563.13|DNASE1L1|pc|chrX:154401757:154402841:-	0	-
#Partially deleted in new
chrX	154401760	154402841	ENSG00000013563.13|DNASE1L1|pc|chrX:154401760:154402841:-	0	-
#Partially deleted in new
chrX	154409417	154409813	ENSG00000013563.13|DNASE1L1|pc|chrX:154409417:154409813:-	0	-
#Partially deleted in new
chrX	154409417	154410039	ENSG00000013563.13|DNASE1L1|pc|chrX:154409417:154410039:-	0	-
#Deleted in new
chrX	154412714	154412865	ENSG00000102125.15|TAZ|pc|chrX:154412714:154412865:+	0	+
#Deleted in new
chrX	154412720	154412987	ENSG00000102125.15|TAZ|pc|chrX:154412720:154412987:+	0	+
#Partially deleted in new
chrX	154418474	154419746	ENSG00000102125.15|TAZ|pc|chrX:154418474:154419746:+	0	+
#Deleted in new
chrX	154424379	154424625	ENSG00000197180.2|CH17-340M24.3|lncRNA|chrX:154424379:154424625:-	0	-
#Deleted in new
chrX	154439709	154439765	ENSG00000203879.11|GDI1|pc|chrX:154439709:154439765:+	0	+
#Deleted in new
chrX	154439709	154439797	ENSG00000203879.11|GDI1|pc|chrX:154439709:154439797:+	0	+
#Split in new
chrX	154472589	154477779	ENSG00000130827.6|PLXNA3|pc|chrX:154472589:154477779:+	0	+
#Deleted in new
chrX	154512313	154512411	ENSG00000071889.16|FAM3A|pc|chrX:154512313:154512411:-	0	-
#Deleted in new
chrX	154512313	154512431	ENSG00000071889.16|FAM3A|pc|chrX:154512313:154512431:-	0	-
#Deleted in new
chrX	154517839	154518631	ENSG00000261773.1|AC244090.2|lncRNA|chrX:154517839:154518631:-	0	-
#Partially deleted in new
chrX	154571247	154571955	ENSG00000279245.1|FAM223A|lncRNA|chrX:154571247:154571955:+	0	+
#Partially deleted in new
chrX	154571247	154571960	ENSG00000279245.1|FAM223A|lncRNA|chrX:154571247:154571960:+	0	+
#Deleted in new
chrX	154585142	154585475	ENSG00000268651.2|CTAG1A|pc|chrX:154585142:154585475:+	0	+
#Deleted in new
chrX	154585153	154585475	ENSG00000268651.2|CTAG1A|pc|chrX:154585153:154585475:+	0	+
#Deleted in new
chrX	154618949	154619271	ENSG00000184033.13|CTAG1B|pc|chrX:154618949:154619271:-	0	-
#Deleted in new
chrX	154618949	154619282	ENSG00000184033.13|CTAG1B|pc|chrX:154618949:154619282:-	0	-
#Partially deleted in new
chrX	154632469	154633182	ENSG00000272681.2|FAM223B|lncRNA|chrX:154632469:154633182:-	0	-
#Partially deleted in new
chrX	154632474	154633182	ENSG00000272681.2|FAM223B|lncRNA|chrX:154632474:154633182:-	0	-
#Deleted in new
chrX	154653246	154653568	ENSG00000126890.13|CTAG2|pc|chrX:154653246:154653568:-	0	-
#Deleted in new
chrX	154653246	154653579	ENSG00000126890.13|CTAG2|pc|chrX:154653246:154653579:-	0	-
#Partially deleted in new
chrX	154675248	154678294	ENSG00000160219.11|GAB3|pc|chrX:154675248:154678294:-	0	-
#Partially deleted in new
chrX	154675252	154678294	ENSG00000160219.11|GAB3|pc|chrX:154675252:154678294:-	0	-
#Partially deleted in new
chrX	154676168	154678294	ENSG00000160219.11|GAB3|pc|chrX:154676168:154678294:-	0	-
#Partially deleted in new
chrX	154678977	154679339	ENSG00000160219.11|GAB3|pc|chrX:154678977:154679339:-	0	-
#Partially deleted in new
chrX	154781599	154783234	ENSG00000130830.14|MPP1|pc|chrX:154781599:154783234:-	0	-
#Partially deleted in new
chrX	154782708	154783507	ENSG00000130830.14|MPP1|pc|chrX:154782708:154783507:-	0	-
#Deleted in new
chrX	154820973	154821007	ENSG00000130830.14|MPP1|pc|chrX:154820973:154821007:-	0	-
#Deleted in new
chrX	154827391	154827458	ENSG00000203870.5|SMIM9|pc|chrX:154827391:154827458:-	0	-
#Deleted in new
chrX	154834562	154834662	ENSG00000203870.5|SMIM9|pc|chrX:154834562:154834662:-	0	-
#Deleted in new
chrX	155025979	155026151	ENSG00000165775.17|FUNDC2|pc|chrX:155025979:155026151:+	0	+
#Deleted in new
chrX	155026610	155026680	ENSG00000165775.17|FUNDC2|pc|chrX:155026610:155026680:+	0	+
#Partially deleted in new
chrX	155032978	155033553	ENSG00000165775.17|FUNDC2|pc|chrX:155032978:155033553:+	0	+
#Deleted in new
chrX	155047056	155047391	ENSG00000165775.17|FUNDC2|pc|chrX:155047056:155047391:+	0	+
#Deleted in new
chrX	155047368	155047391	ENSG00000165775.17|FUNDC2|pc|chrX:155047368:155047391:+	0	+
#Partially deleted in new
chrX	155049093	155051801	ENSG00000165775.17|FUNDC2|pc|chrX:155049093:155051801:+	0	+
#Partially deleted in new
chrX	155078615	155078930	ENSG00000185515.14|BRCC3|pc|chrX:155078615:155078930:+	0	+
#Deleted in new
chrX	155099314	155099389	ENSG00000185515.14|BRCC3|pc|chrX:155099314:155099389:+	0	+
#Deleted in new
chrX	155197006	155197139	ENSG00000155959.10|VBP1|pc|chrX:155197006:155197139:+	0	+
#Partially deleted in new
chrX	155276210	155278064	ENSG00000155962.12|CLIC2|pc|chrX:155276210:155278064:-	0	-
#Deleted in new
chrX	155278810	155278930	ENSG00000155962.12|CLIC2|pc|chrX:155278810:155278930:-	0	-
#Deleted in new
chrX	155309571	155309625	ENSG00000155962.12|CLIC2|pc|chrX:155309571:155309625:-	0	-
#Deleted in new
chrX	155334370	155334427	ENSG00000155962.12|CLIC2|pc|chrX:155334370:155334427:-	0	-
#Deleted in new
chrX	155334370	155334542	ENSG00000155962.12|CLIC2|pc|chrX:155334370:155334542:-	0	-
#Deleted in new
chrX	155334370	155334646	ENSG00000155962.12|CLIC2|pc|chrX:155334370:155334646:-	0	-
#Deleted in new
chrX	155334370	155334657	ENSG00000155962.12|CLIC2|pc|chrX:155334370:155334657:-	0	-
#Deleted in new
chrX	155334857	155335249	ENSG00000224216.1|AC234781.1|lncRNA|chrX:155334857:155335249:-	0	-
#Deleted in new
chrX	155351859	155351926	ENSG00000224216.1|AC234781.1|lncRNA|chrX:155351859:155351926:-	0	-
#Deleted in new
chrX	155351859	155351957	ENSG00000224216.1|AC234781.1|lncRNA|chrX:155351859:155351957:-	0	-
#Deleted in new
chrX	155466539	155466849	ENSG00000224533.4|TMLHE-AS1|lncRNA|chrX:155466539:155466849:+	0	+
#Deleted in new
chrX	155468285	155468374	ENSG00000225393.1|BX571846.1|lncRNA|chrX:155468285:155468374:+	0	+
#Deleted in new
chrX	155474538	155474601	ENSG00000224533.4|TMLHE-AS1|lncRNA|chrX:155474538:155474601:+	0	+
#Deleted in new
chrX	155486582	155487046	ENSG00000225393.1|BX571846.1|lncRNA|chrX:155486582:155487046:+	0	+
#Deleted in new
chrX	155489291	155489389	ENSG00000224533.4|TMLHE-AS1|lncRNA|chrX:155489291:155489389:+	0	+
#Deleted in new
chrX	155489322	155489389	ENSG00000224533.4|TMLHE-AS1|lncRNA|chrX:155489322:155489389:+	0	+
#Deleted in new
chrX	155669757	155669944	ENSG00000185973.10|TMLHE|pc|chrX:155669757:155669944:-	0	-
#Deleted in new
chrX	156007898	156008046	ENSG00000124334.17|IL9R|pc|chrX:156007898:156008046:+	0	+
#Deleted in new
chrX	156014622	156015500	ENSG00000185203.12|WASIR1|lncRNA|chrX:156014622:156015500:-	0	-
#Deleted in new
chrX	156016661	156016837	ENSG00000185203.12|WASIR1|lncRNA|chrX:156016661:156016837:-	0	-
#Deleted in new
chrX	15621011	15621484	ENSG00000225833.1|GS1-594A7.3|lncRNA|chrX:15621011:15621484:+	0	+
#Deleted in new
chrX	15721496	15721592	ENSG00000169239.12|CA5B|pc|chrX:15721496:15721592:+	0	+
#Deleted in new
chrX	15801273	15801790	ENSG00000169249.12|ZRSR2|pc|chrX:15801273:15801790:+	0	+
#Partially deleted in new
chrX	1599191	1600303	ENSG00000197976.11|AKAP17A|pc|chrX:1599191:1600303:+	0	+
#Deleted in new
chrX	1600137	1600207	ENSG00000197976.11|AKAP17A|pc|chrX:1600137:1600207:+	0	+
#Deleted in new
chrX	1615000	1615268	ENSG00000196433.12|ASMT|pc|chrX:1615000:1615268:+	0	+
#Deleted in new
chrX	1615163	1615268	ENSG00000196433.12|ASMT|pc|chrX:1615163:1615268:+	0	+
#Deleted in new
chrX	1615174	1615268	ENSG00000196433.12|ASMT|pc|chrX:1615174:1615268:+	0	+
#Deleted in new
chrX	16159652	16159672	ENSG00000238178.6|AC078993.1|lncRNA|chrX:16159652:16159672:-	0	-
#Deleted in new
chrX	16167206	16167342	ENSG00000238178.6|AC078993.1|lncRNA|chrX:16167206:16167342:-	0	-
#Deleted in new
chrX	16167480	16167783	ENSG00000182798.10|MAGEB17|pc|chrX:16167480:16167783:+	0	+
#Deleted in new
chrX	16167712	16167783	ENSG00000182798.10|MAGEB17|pc|chrX:16167712:16167783:+	0	+
#Deleted in new
chrX	16168680	16168893	ENSG00000238178.6|AC078993.1|lncRNA|chrX:16168680:16168893:-	0	-
#Deleted in new
chrX	16168731	16168908	ENSG00000182798.10|MAGEB17|pc|chrX:16168731:16168908:+	0	+
#Partially deleted in new
chrX	1627745	1628033	ENSG00000196433.12|ASMT|pc|chrX:1627745:1628033:+	0	+
#Deleted in new
chrX	1632703	1632787	ENSG00000196433.12|ASMT|pc|chrX:1632703:1632787:+	0	+
#Deleted in new
chrX	1633149	1633290	ENSG00000196433.12|ASMT|pc|chrX:1633149:1633290:+	0	+
#Deleted in new
chrX	1636241	1636463	ENSG00000196433.12|ASMT|pc|chrX:1636241:1636463:+	0	+
#Deleted in new
chrX	1636397	1636560	ENSG00000196433.12|ASMT|pc|chrX:1636397:1636560:+	0	+
#Deleted in new
chrX	1636437	1636560	ENSG00000196433.12|ASMT|pc|chrX:1636437:1636560:+	0	+
#Deleted in new
chrX	1642802	1643027	ENSG00000196433.12|ASMT|pc|chrX:1642802:1643027:+	0	+
#Deleted in new
chrX	1642802	1643081	ENSG00000196433.12|ASMT|pc|chrX:1642802:1643081:+	0	+
#Partially deleted in new
chrX	16588002	16589775	ENSG00000047230.14|CTPS2|pc|chrX:16588002:16589775:-	0	-
#Partially deleted in new
chrX	16638486	16638961	ENSG00000047230.14|CTPS2|pc|chrX:16638486:16638961:-	0	-
#Partially deleted in new
chrX	16736165	16736521	ENSG00000169895.5|SYAP1|pc|chrX:16736165:16736521:+	0	+
#Partially deleted in new
chrX	16760231	16765336	ENSG00000169895.5|SYAP1|pc|chrX:16760231:16765336:+	0	+
#Partially deleted in new
chrX	16845827	16849301	ENSG00000102054.17|RBBP7|pc|chrX:16845827:16849301:-	0	-
#Deleted in new
chrX	1732583	1732723	ENSG00000223511.6|AL683807.1|lncRNA|chrX:1732583:1732723:+	0	+
#Deleted in new
chrX	1733949	1734196	ENSG00000223511.6|AL683807.1|lncRNA|chrX:1733949:1734196:+	0	+
#Deleted in new
chrX	1734116	1734196	ENSG00000223511.6|AL683807.1|lncRNA|chrX:1734116:1734196:+	0	+
#Deleted in new
chrX	1741930	1741988	ENSG00000223511.6|AL683807.1|lncRNA|chrX:1741930:1741988:+	0	+
#Deleted in new
chrX	1755683	1755985	ENSG00000223511.6|AL683807.1|lncRNA|chrX:1755683:1755985:+	0	+
#Deleted in new
chrX	17557197	17557387	ENSG00000230020.1|NHS-AS1|lncRNA|chrX:17557197:17557387:-	0	-
#Deleted in new
chrX	1767346	1767552	ENSG00000234622.6|AL683807.2|lncRNA|chrX:1767346:1767552:+	0	+
#Deleted in new
chrX	1768434	1768776	ENSG00000234622.6|AL683807.2|lncRNA|chrX:1768434:1768776:+	0	+
#Deleted in new
chrX	17737448	17737680	ENSG00000047634.14|SCML1|pc|chrX:17737448:17737680:+	0	+
#Deleted in new
chrX	17737467	17737680	ENSG00000047634.14|SCML1|pc|chrX:17737467:17737680:+	0	+
#Deleted in new
chrX	17737468	17737680	ENSG00000047634.14|SCML1|pc|chrX:17737468:17737680:+	0	+
#Deleted in new
chrX	17737550	17737680	ENSG00000047634.14|SCML1|pc|chrX:17737550:17737680:+	0	+
#Deleted in new
chrX	17737724	17737982	ENSG00000047634.14|SCML1|pc|chrX:17737724:17737982:+	0	+
#Deleted in new
chrX	17970196	17970430	ENSG00000225882.1|LINC01456|lncRNA|chrX:17970196:17970430:-	0	-
#Deleted in new
chrX	18104550	18104644	ENSG00000225882.1|LINC01456|lncRNA|chrX:18104550:18104644:-	0	-
#Deleted in new
chrX	18180509	18180650	ENSG00000177324.13|BEND2|pc|chrX:18180509:18180650:-	0	-
#Deleted in new
chrX	18213773	18213911	ENSG00000177324.13|BEND2|pc|chrX:18213773:18213911:-	0	-
#Deleted in new
chrX	18220725	18220750	ENSG00000177324.13|BEND2|pc|chrX:18220725:18220750:-	0	-
#Deleted in new
chrX	18220725	18220883	ENSG00000177324.13|BEND2|pc|chrX:18220725:18220883:-	0	-
#Deleted in new
chrX	18443818	18443959	ENSG00000008086.11|CDKL5|pc|chrX:18443818:18443959:+	0	+
#Deleted in new
chrX	18646006	18646090	ENSG00000008086.11|CDKL5|pc|chrX:18646006:18646090:+	0	+
#Deleted in new
chrX	18650409	18650592	ENSG00000008086.11|CDKL5|pc|chrX:18650409:18650592:+	0	+
#Deleted in new
chrX	18686137	18686231	ENSG00000086717.18|PPEF1|pc|chrX:18686137:18686231:+	0	+
#Deleted in new
chrX	18688642	18688905	ENSG00000237221.1|PPEF1-AS1|lncRNA|chrX:18688642:18688905:-	0	-
#Deleted in new
chrX	18697844	18697909	ENSG00000086717.18|PPEF1|pc|chrX:18697844:18697909:+	0	+
#Deleted in new
chrX	18697844	18697931	ENSG00000086717.18|PPEF1|pc|chrX:18697844:18697931:+	0	+
#Deleted in new
chrX	18902791	18902910	ENSG00000044446.11|PHKA2|pc|chrX:18902791:18902910:-	0	-
#Deleted in new
chrX	18902817	18902910	ENSG00000044446.11|PHKA2|pc|chrX:18902817:18902910:-	0	-
#Deleted in new
chrX	19345735	19345819	ENSG00000131828.13|PDHA1|pc|chrX:19345735:19345819:+	0	+
#Partially deleted in new
chrX	19346509	19346623	ENSG00000131828.13|PDHA1|pc|chrX:19346509:19346623:+	0	+
#Deleted in new
chrX	19408527	19408625	ENSG00000180815.14|MAP3K15|pc|chrX:19408527:19408625:-	0	-
#Partially deleted in new
chrX	19481893	19482276	ENSG00000180815.14|MAP3K15|pc|chrX:19481893:19482276:-	0	-
#Deleted in new
chrX	19664688	19664715	ENSG00000147010.17|SH3KBP1|pc|chrX:19664688:19664715:-	0	-
#Deleted in new
chrX	19913148	19913479	ENSG00000173681.16|BCLAF3|pc|chrX:19913148:19913479:-	0	-
#Deleted in new
chrX	19914938	19915035	ENSG00000173681.16|BCLAF3|pc|chrX:19914938:19915035:-	0	-
#Deleted in new
chrX	19914938	19915049	ENSG00000173681.16|BCLAF3|pc|chrX:19914938:19915049:-	0	-
#Deleted in new
chrX	19923157	19923407	ENSG00000173681.16|BCLAF3|pc|chrX:19923157:19923407:-	0	-
#Partially deleted in new
chrX	19935357	19935576	ENSG00000173681.16|BCLAF3|pc|chrX:19935357:19935576:-	0	-
#Deleted in new
chrX	20492268	20492349	ENSG00000283400.1|AL807740.1|lncRNA|chrX:20492268:20492349:+	0	+
#Deleted in new
chrX	20769717	20770060	ENSG00000283380.1|AL807742.1|lncRNA|chrX:20769717:20770060:-	0	-
#Deleted in new
chrX	20874167	20875498	ENSG00000283380.1|AL807742.1|lncRNA|chrX:20874167:20875498:-	0	-
#Deleted in new
chrX	20984994	20985123	ENSG00000283380.1|AL807742.1|lncRNA|chrX:20984994:20985123:-	0	-
#Deleted in new
chrX	20990774	20990870	ENSG00000283380.1|AL807742.1|lncRNA|chrX:20990774:20990870:-	0	-
#Deleted in new
chrX	21029768	21029835	ENSG00000283380.1|AL807742.1|lncRNA|chrX:21029768:21029835:-	0	-
#Deleted in new
chrX	21061972	21062120	ENSG00000283380.1|AL807742.1|lncRNA|chrX:21061972:21062120:-	0	-
#Deleted in new
chrX	21082810	21082936	ENSG00000283380.1|AL807742.1|lncRNA|chrX:21082810:21082936:-	0	-
#Deleted in new
chrX	21082810	21082964	ENSG00000283380.1|AL807742.1|lncRNA|chrX:21082810:21082964:-	0	-
#Deleted in new
chrX	21162482	21162645	ENSG00000283546.1|BX088723.1|lncRNA|chrX:21162482:21162645:+	0	+
#Deleted in new
chrX	21163282	21163726	ENSG00000283546.1|BX088723.1|lncRNA|chrX:21163282:21163726:+	0	+
#Deleted in new
chrX	21257883	21259888	ENSG00000283380.1|AL807742.1|lncRNA|chrX:21257883:21259888:-	0	-
#Deleted in new
chrX	21300866	21300945	ENSG00000283380.1|AL807742.1|lncRNA|chrX:21300866:21300945:-	0	-
#Split in new
chrX	21869497	21873084	ENSG00000012174.11|MBTPS2|pc|chrX:21869497:21873084:+	0	+
#Deleted in new
chrX	22171158	22171190	ENSG00000224204.1|PHEX-AS1|lncRNA|chrX:22171158:22171190:-	0	-
#Partially deleted in new
chrX	22171509	22171644	ENSG00000224204.1|PHEX-AS1|lncRNA|chrX:22171509:22171644:-	0	-
#Partially deleted in new
chrX	2219515	2221229	ENSG00000169084.13|DHRSX|pc|chrX:2219515:2221229:-	0	-
#Duplicated in new
chrX	22272942	22274461	ENSG00000175809.5|ZNF645|pc|chrX:22272942:22274461:+	0	+
#Deleted in new
chrX	2261393	2261767	ENSG00000169084.13|DHRSX|pc|chrX:2261393:2261767:-	0	-
#Deleted in new
chrX	22698456	22698564	ENSG00000237019.1|AC004470.1|lncRNA|chrX:22698456:22698564:+	0	+
#Deleted in new
chrX	22743228	22743338	ENSG00000233067.2|PTCHD1-AS|lncRNA|chrX:22743228:22743338:-	0	-
#Deleted in new
chrX	22768692	22768966	ENSG00000237019.1|AC004470.1|lncRNA|chrX:22768692:22768966:+	0	+
#Deleted in new
chrX	2291501	2291603	ENSG00000169084.13|DHRSX|pc|chrX:2291501:2291603:-	0	-
#Deleted in new
chrX	23064037	23064119	ENSG00000233067.2|PTCHD1-AS|lncRNA|chrX:23064037:23064119:-	0	-
#Deleted in new
chrX	23064037	23064121	ENSG00000233067.2|PTCHD1-AS|lncRNA|chrX:23064037:23064121:-	0	-
#Deleted in new
chrX	23270050	23270176	ENSG00000233067.2|PTCHD1-AS|lncRNA|chrX:23270050:23270176:-	0	-
#Deleted in new
chrX	2334294	2334919	ENSG00000223571.6|DHRSX-IT1|lncRNA|chrX:2334294:2334919:-	0	-
#Deleted in new
chrX	2336384	2336410	ENSG00000223571.6|DHRSX-IT1|lncRNA|chrX:2336384:2336410:-	0	-
#Deleted in new
chrX	2337830	2337999	ENSG00000169084.13|DHRSX|pc|chrX:2337830:2337999:-	0	-
#Deleted in new
chrX	23756926	23757109	ENSG00000123130.16|ACOT9|pc|chrX:23756926:23757109:-	0	-
#Deleted in new
chrX	23762436	23762582	ENSG00000123130.16|ACOT9|pc|chrX:23762436:23762582:-	0	-
#Partially deleted in new
chrX	23765546	23766475	ENSG00000123130.16|ACOT9|pc|chrX:23765546:23766475:-	0	-
#Partially deleted in new
chrX	23883358	23884019	ENSG00000184831.13|APOO|pc|chrX:23883358:23884019:-	0	-
#Deleted in new
chrX	2392353	2392474	ENSG00000169084.13|DHRSX|pc|chrX:2392353:2392474:-	0	-
#Deleted in new
chrX	2408744	2408813	ENSG00000169084.13|DHRSX|pc|chrX:2408744:2408813:-	0	-
#Deleted in new
chrX	24161714	24161842	ENSG00000005889.15|ZFX|pc|chrX:24161714:24161842:+	0	+
#Deleted in new
chrX	24173606	24173723	ENSG00000005889.15|ZFX|pc|chrX:24173606:24173723:+	0	+
#Deleted in new
chrX	24650072	24650149	ENSG00000236836.1|PCYT1B-AS1|lncRNA|chrX:24650072:24650149:+	0	+
#Deleted in new
chrX	2486413	2490769	ENSG00000214717.11|ZBED1|pc|chrX:2486413:2490769:-	0	-
#Deleted in new
chrX	2486413	2490772	ENSG00000214717.11|ZBED1|pc|chrX:2486413:2490772:-	0	-
#Deleted in new
chrX	2486981	2487702	ENSG00000214717.11|ZBED1|pc|chrX:2486981:2487702:-	0	-
#Deleted in new
chrX	2488185	2490772	ENSG00000214717.11|ZBED1|pc|chrX:2488185:2490772:-	0	-
#Deleted in new
chrX	2488787	2488971	ENSG00000214717.11|ZBED1|pc|chrX:2488787:2488971:-	0	-
#Deleted in new
chrX	2489904	2490772	ENSG00000214717.11|ZBED1|pc|chrX:2489904:2490772:-	0	-
#Deleted in new
chrX	2500310	2500555	ENSG00000214717.11|ZBED1|pc|chrX:2500310:2500555:-	0	-
#Deleted in new
chrX	2500310	2500589	ENSG00000169084.13|DHRSX|pc|chrX:2500310:2500589:-	0	-
#Deleted in new
chrX	2500310	2500650	ENSG00000169084.13|DHRSX|pc|chrX:2500310:2500650:-	0	-
#Deleted in new
chrX	2502760	2502805	ENSG00000169084.13|DHRSX|pc|chrX:2502760:2502805:-	0	-
#Partially deleted in new
chrX	25880764	25880869	ENSG00000233403.1|AC121342.1|lncRNA|chrX:25880764:25880869:+	0	+
#Deleted in new
chrX	25882073	25882306	ENSG00000233403.1|AC121342.1|lncRNA|chrX:25882073:25882306:+	0	+
#Deleted in new
chrX	25893363	25893544	ENSG00000233403.1|AC121342.1|lncRNA|chrX:25893363:25893544:+	0	+
#Deleted in new
chrX	2612987	2613696	ENSG00000230542.6|LINC00102|lncRNA|chrX:2612987:2613696:-	0	-
#Deleted in new
chrX	2614716	2615347	ENSG00000230542.6|LINC00102|lncRNA|chrX:2614716:2615347:-	0	-
#Deleted in new
chrX	26192439	26192527	ENSG00000176746.6|MAGEB6|pc|chrX:26192439:26192527:+	0	+
#Deleted in new
chrX	2691178	2691427	ENSG00000002586.18|CD99|pc|chrX:2691178:2691427:+	0	+
#Deleted in new
chrX	2691186	2691427	ENSG00000002586.18|CD99|pc|chrX:2691186:2691427:+	0	+
#Deleted in new
chrX	2691275	2691427	ENSG00000002586.18|CD99|pc|chrX:2691275:2691427:+	0	+
#Deleted in new
chrX	2691279	2691427	ENSG00000002586.18|CD99|pc|chrX:2691279:2691427:+	0	+
#Deleted in new
chrX	2691309	2691427	ENSG00000002586.18|CD99|pc|chrX:2691309:2691427:+	0	+
#Deleted in new
chrX	2691312	2691427	ENSG00000002586.18|CD99|pc|chrX:2691312:2691427:+	0	+
#Deleted in new
chrX	2691360	2691427	ENSG00000002586.18|CD99|pc|chrX:2691360:2691427:+	0	+
#Deleted in new
chrX	2691499	2691695	ENSG00000002586.18|CD99|pc|chrX:2691499:2691695:+	0	+
#Deleted in new
chrX	2691787	2692250	ENSG00000002586.18|CD99|pc|chrX:2691787:2692250:+	0	+
#Deleted in new
chrX	2714421	2714454	ENSG00000002586.18|CD99|pc|chrX:2714421:2714454:+	0	+
#Deleted in new
chrX	27158904	27158993	ENSG00000242021.2|AC112493.1|lncRNA|chrX:27158904:27158993:-	0	-
#Partially deleted in new
chrX	27158904	27159096	ENSG00000242021.2|AC112493.1|lncRNA|chrX:27158904:27159096:-	0	-
#Deleted in new
chrX	27162420	27162576	ENSG00000242021.2|AC112493.1|lncRNA|chrX:27162420:27162576:-	0	-
#Deleted in new
chrX	27169035	27169140	ENSG00000242021.2|AC112493.1|lncRNA|chrX:27169035:27169140:-	0	-
#Deleted in new
chrX	27169866	27169949	ENSG00000242021.2|AC112493.1|lncRNA|chrX:27169866:27169949:-	0	-
#Deleted in new
chrX	2717373	2717474	ENSG00000002586.18|CD99|pc|chrX:2717373:2717474:+	0	+
#Deleted in new
chrX	2717604	2717652	ENSG00000002586.18|CD99|pc|chrX:2717604:2717652:+	0	+
#Deleted in new
chrX	27186539	27186657	ENSG00000228933.7|AC107419.1|lncRNA|chrX:27186539:27186657:-	0	-
#Deleted in new
chrX	2719067	2719705	ENSG00000002586.18|CD99|pc|chrX:2719067:2719705:+	0	+
#Deleted in new
chrX	2719660	2719705	ENSG00000002586.18|CD99|pc|chrX:2719660:2719705:+	0	+
#Deleted in new
chrX	2720355	2720424	ENSG00000002586.18|CD99|pc|chrX:2720355:2720424:+	0	+
#Deleted in new
chrX	2722626	2722674	ENSG00000002586.18|CD99|pc|chrX:2722626:2722674:+	0	+
#Deleted in new
chrX	2723313	2723364	ENSG00000002586.18|CD99|pc|chrX:2723313:2723364:+	0	+
#Deleted in new
chrX	2726259	2726363	ENSG00000002586.18|CD99|pc|chrX:2726259:2726363:+	0	+
#Deleted in new
chrX	2726259	2726373	ENSG00000002586.18|CD99|pc|chrX:2726259:2726373:+	0	+
#Deleted in new
chrX	2726340	2726373	ENSG00000002586.18|CD99|pc|chrX:2726340:2726373:+	0	+
#Deleted in new
chrX	27265747	27265811	ENSG00000228933.7|AC107419.1|lncRNA|chrX:27265747:27265811:-	0	-
#Deleted in new
chrX	2727292	2727343	ENSG00000002586.18|CD99|pc|chrX:2727292:2727343:+	0	+
#Deleted in new
chrX	2733356	2733374	ENSG00000002586.18|CD99|pc|chrX:2733356:2733374:+	0	+
#Deleted in new
chrX	2733356	2733667	ENSG00000002586.18|CD99|pc|chrX:2733356:2733667:+	0	+
#Deleted in new
chrX	2733356	2733672	ENSG00000002586.18|CD99|pc|chrX:2733356:2733672:+	0	+
#Deleted in new
chrX	27336409	27336493	ENSG00000228933.7|AC107419.1|lncRNA|chrX:27336409:27336493:-	0	-
#Deleted in new
chrX	27350023	27350823	ENSG00000228933.7|AC107419.1|lncRNA|chrX:27350023:27350823:-	0	-
#Deleted in new
chrX	2737880	2738256	ENSG00000002586.18|CD99|pc|chrX:2737880:2738256:+	0	+
#Deleted in new
chrX	2738199	2738256	ENSG00000002586.18|CD99|pc|chrX:2738199:2738256:+	0	+
#Deleted in new
chrX	2738202	2738256	ENSG00000002586.18|CD99|pc|chrX:2738202:2738256:+	0	+
#Deleted in new
chrX	27393541	27393632	ENSG00000228933.7|AC107419.1|lncRNA|chrX:27393541:27393632:-	0	-
#Deleted in new
chrX	27394979	27395029	ENSG00000228933.7|AC107419.1|lncRNA|chrX:27394979:27395029:-	0	-
#Deleted in new
chrX	27398750	27398837	ENSG00000228933.7|AC107419.1|lncRNA|chrX:27398750:27398837:-	0	-
#Deleted in new
chrX	27398936	27398989	ENSG00000228933.7|AC107419.1|lncRNA|chrX:27398936:27398989:-	0	-
#Deleted in new
chrX	27398936	27398997	ENSG00000228933.7|AC107419.1|lncRNA|chrX:27398936:27398997:-	0	-
#Deleted in new
chrX	2740778	2740804	ENSG00000002586.18|CD99|pc|chrX:2740778:2740804:+	0	+
#Deleted in new
chrX	2740778	2741101	ENSG00000002586.18|CD99|pc|chrX:2740778:2741101:+	0	+
#Deleted in new
chrX	2740778	2741125	ENSG00000002586.18|CD99|pc|chrX:2740778:2741125:+	0	+
#Deleted in new
chrX	2740778	2741290	ENSG00000002586.18|CD99|pc|chrX:2740778:2741290:+	0	+
#Deleted in new
chrX	2740778	2741300	ENSG00000002586.18|CD99|pc|chrX:2740778:2741300:+	0	+
#Deleted in new
chrX	2740778	2741309	ENSG00000002586.18|CD99|pc|chrX:2740778:2741309:+	0	+
#Deleted in new
chrX	2752049	2752335	ENSG00000124343.12|XG|pc|chrX:2752049:2752335:+	0	+
#Deleted in new
chrX	2752051	2752335	ENSG00000124343.12|XG|pc|chrX:2752051:2752335:+	0	+
#Deleted in new
chrX	2752144	2752335	ENSG00000124343.12|XG|pc|chrX:2752144:2752335:+	0	+
#Deleted in new
chrX	2752295	2752335	ENSG00000124343.12|XG|pc|chrX:2752295:2752335:+	0	+
#Deleted in new
chrX	27590381	27590440	ENSG00000189186.10|DCAF8L2|pc|chrX:27590381:27590440:+	0	+
#Deleted in new
chrX	27590382	27590440	ENSG00000189186.10|DCAF8L2|pc|chrX:27590382:27590440:+	0	+
#Deleted in new
chrX	27590399	27590440	ENSG00000189186.10|DCAF8L2|pc|chrX:27590399:27590440:+	0	+
#Deleted in new
chrX	27590412	27590440	ENSG00000189186.10|DCAF8L2|pc|chrX:27590412:27590440:+	0	+
#Deleted in new
chrX	27631878	27632000	ENSG00000189186.10|DCAF8L2|pc|chrX:27631878:27632000:+	0	+
#Deleted in new
chrX	276321	276394	ENSG00000182378.13|PLCXD1|pc|chrX:276321:276394:+	0	+
#Deleted in new
chrX	276323	276394	ENSG00000182378.13|PLCXD1|pc|chrX:276323:276394:+	0	+
#Deleted in new
chrX	276352	276394	ENSG00000182378.13|PLCXD1|pc|chrX:276352:276394:+	0	+
#Deleted in new
chrX	27677835	27677912	ENSG00000189186.10|DCAF8L2|pc|chrX:27677835:27677912:+	0	+
#Deleted in new
chrX	2770549	2770591	ENSG00000124343.12|XG|pc|chrX:2770549:2770591:+	0	+
#Deleted in new
chrX	27746837	27746883	ENSG00000189186.10|DCAF8L2|pc|chrX:27746837:27746883:+	0	+
#Partially deleted in new
chrX	27746837	27746983	ENSG00000189186.10|DCAF8L2|pc|chrX:27746837:27746983:+	0	+
#Deleted in new
chrX	2774715	2774739	ENSG00000124343.12|XG|pc|chrX:2774715:2774739:+	0	+
#Deleted in new
chrX	2774715	2774996	ENSG00000124343.12|XG|pc|chrX:2774715:2774996:+	0	+
#Deleted in new
chrX	27807989	27808036	ENSG00000177689.10|MAGEB10|pc|chrX:27807989:27808036:+	0	+
#Deleted in new
chrX	27817553	27817702	ENSG00000177689.10|MAGEB10|pc|chrX:27817553:27817702:+	0	+
#Deleted in new
chrX	2782065	2782128	ENSG00000124343.12|XG|pc|chrX:2782065:2782128:+	0	+
#Deleted in new
chrX	2789643	2789706	ENSG00000124343.12|XG|pc|chrX:2789643:2789706:+	0	+
#Deleted in new
chrX	2794534	2794603	ENSG00000124343.12|XG|pc|chrX:2794534:2794603:+	0	+
#Deleted in new
chrX	2797309	2797360	ENSG00000124343.12|XG|pc|chrX:2797309:2797360:+	0	+
#Deleted in new
chrX	2806700	2806745	ENSG00000124343.12|XG|pc|chrX:2806700:2806745:+	0	+
#Deleted in new
chrX	2808184	2808220	ENSG00000124343.12|XG|pc|chrX:2808184:2808220:+	0	+
#Deleted in new
chrX	2808184	2808377	ENSG00000124343.12|XG|pc|chrX:2808184:2808377:+	0	+
#Deleted in new
chrX	2811335	2811436	ENSG00000124343.12|XG|pc|chrX:2811335:2811436:+	0	+
#Deleted in new
chrX	2811335	2811452	ENSG00000124343.12|XG|pc|chrX:2811335:2811452:+	0	+
#Split in new
chrX	281191	281684	ENSG00000182378.13|PLCXD1|pc|chrX:281191:281684:+	0	+
#Deleted in new
chrX	2814363	2814548	ENSG00000124343.12|XG|pc|chrX:2814363:2814548:+	0	+
#Deleted in new
chrX	2814363	2815927	ENSG00000124343.12|XG|pc|chrX:2814363:2815927:+	0	+
#Deleted in new
chrX	281461	281684	ENSG00000182378.13|PLCXD1|pc|chrX:281461:281684:+	0	+
#Deleted in new
chrX	281481	281684	ENSG00000182378.13|PLCXD1|pc|chrX:281481:281684:+	0	+
#Deleted in new
chrX	2828787	2828975	ENSG00000056998.19|GYG2|pc|chrX:2828787:2828975:+	0	+
#Deleted in new
chrX	2828821	2828975	ENSG00000056998.19|GYG2|pc|chrX:2828821:2828975:+	0	+
#Deleted in new
chrX	2828913	2828975	ENSG00000056998.19|GYG2|pc|chrX:2828913:2828975:+	0	+
#Deleted in new
chrX	2829271	2829354	ENSG00000056998.19|GYG2|pc|chrX:2829271:2829354:+	0	+
#Deleted in new
chrX	2830060	2830195	ENSG00000056998.19|GYG2|pc|chrX:2830060:2830195:+	0	+
#Deleted in new
chrX	2830188	2830195	ENSG00000056998.19|GYG2|pc|chrX:2830188:2830195:+	0	+
#Deleted in new
chrX	283162	283201	ENSG00000182378.13|PLCXD1|pc|chrX:283162:283201:+	0	+
#Deleted in new
chrX	283464	283488	ENSG00000182378.13|PLCXD1|pc|chrX:283464:283488:+	0	+
#Deleted in new
chrX	283478	283520	ENSG00000182378.13|PLCXD1|pc|chrX:283478:283520:+	0	+
#Partially deleted in new
chrX	283733	284314	ENSG00000182378.13|PLCXD1|pc|chrX:283733:284314:+	0	+
#Deleted in new
chrX	2842990	2843090	ENSG00000056998.19|GYG2|pc|chrX:2842990:2843090:+	0	+
#Deleted in new
chrX	2842997	2843090	ENSG00000056998.19|GYG2|pc|chrX:2842997:2843090:+	0	+
#Deleted in new
chrX	28571531	28572081	ENSG00000223742.1|AC112495.1|lncRNA|chrX:28571531:28572081:-	0	-
#Deleted in new
chrX	28576304	28576422	ENSG00000223742.1|AC112495.1|lncRNA|chrX:28576304:28576422:-	0	-
#Deleted in new
chrX	2859842	2860065	ENSG00000056998.19|GYG2|pc|chrX:2859842:2860065:+	0	+
#Deleted in new
chrX	2861521	2861722	ENSG00000056998.19|GYG2|pc|chrX:2861521:2861722:+	0	+
#Deleted in new
chrX	2875809	2875914	ENSG00000056998.19|GYG2|pc|chrX:2875809:2875914:+	0	+
#Deleted in new
chrX	2877199	2877307	ENSG00000056998.19|GYG2|pc|chrX:2877199:2877307:+	0	+
#Deleted in new
chrX	2877199	2877443	ENSG00000056998.19|GYG2|pc|chrX:2877199:2877443:+	0	+
#Deleted in new
chrX	2881051	2881091	ENSG00000056998.19|GYG2|pc|chrX:2881051:2881091:+	0	+
#Deleted in new
chrX	2881051	2881213	ENSG00000056998.19|GYG2|pc|chrX:2881051:2881213:+	0	+
#Deleted in new
chrX	2881051	2881440	ENSG00000056998.19|GYG2|pc|chrX:2881051:2881440:+	0	+
#Deleted in new
chrX	2881051	2882817	ENSG00000056998.19|GYG2|pc|chrX:2881051:2882817:+	0	+
#Deleted in new
chrX	2881051	2882818	ENSG00000056998.19|GYG2|pc|chrX:2881051:2882818:+	0	+
#Deleted in new
chrX	2881051	2882820	ENSG00000056998.19|GYG2|pc|chrX:2881051:2882820:+	0	+
#Partially deleted in new
chrX	28942199	28942568	ENSG00000237994.1|AC003659.1|lncRNA|chrX:28942199:28942568:+	0	+
#Deleted in new
chrX	2903969	2907632	ENSG00000006756.15|ARSD|pc|chrX:2903969:2907632:-	0	-
#Deleted in new
chrX	2904903	2905205	ENSG00000229851.1|ARSD-AS1|lncRNA|chrX:2904903:2905205:+	0	+
#Deleted in new
chrX	2904917	2905062	ENSG00000006756.15|ARSD|pc|chrX:2904917:2905062:-	0	-
#Deleted in new
chrX	2905567	2906081	ENSG00000229851.1|ARSD-AS1|lncRNA|chrX:2905567:2906081:+	0	+
#Deleted in new
chrX	2906155	2907984	ENSG00000006756.15|ARSD|pc|chrX:2906155:2907984:-	0	-
#Deleted in new
chrX	2907423	2907632	ENSG00000006756.15|ARSD|pc|chrX:2907423:2907632:-	0	-
#Deleted in new
chrX	2910658	2910793	ENSG00000006756.15|ARSD|pc|chrX:2910658:2910793:-	0	-
#Deleted in new
chrX	2913613	2914773	ENSG00000006756.15|ARSD|pc|chrX:2913613:2914773:-	0	-
#Deleted in new
chrX	2914496	2914773	ENSG00000006756.15|ARSD|pc|chrX:2914496:2914773:-	0	-
#Deleted in new
chrX	2917803	2917878	ENSG00000006756.15|ARSD|pc|chrX:2917803:2917878:-	0	-
#Deleted in new
chrX	2917803	2918227	ENSG00000006756.15|ARSD|pc|chrX:2917803:2918227:-	0	-
#Deleted in new
chrX	2920380	2920723	ENSG00000006756.15|ARSD|pc|chrX:2920380:2920723:-	0	-
#Deleted in new
chrX	2920600	2920723	ENSG00000006756.15|ARSD|pc|chrX:2920600:2920723:-	0	-
#Deleted in new
chrX	2920675	2920723	ENSG00000006756.15|ARSD|pc|chrX:2920675:2920723:-	0	-
#Deleted in new
chrX	2923167	2923306	ENSG00000006756.15|ARSD|pc|chrX:2923167:2923306:-	0	-
#Deleted in new
chrX	2929231	2929275	ENSG00000006756.15|ARSD|pc|chrX:2929231:2929275:-	0	-
#Deleted in new
chrX	2929231	2929279	ENSG00000006756.15|ARSD|pc|chrX:2929231:2929279:-	0	-
#Deleted in new
chrX	2929231	2929339	ENSG00000006756.15|ARSD|pc|chrX:2929231:2929339:-	0	-
#Deleted in new
chrX	2929231	2929349	ENSG00000006756.15|ARSD|pc|chrX:2929231:2929349:-	0	-
#Deleted in new
chrX	2929231	2929351	ENSG00000006756.15|ARSD|pc|chrX:2929231:2929351:-	0	-
#Partially deleted in new
chrX	2934631	2935190	ENSG00000157399.14|ARSE|pc|chrX:2934631:2935190:-	0	-
#Deleted in new
chrX	2943064	2943199	ENSG00000157399.14|ARSE|pc|chrX:2943064:2943199:-	0	-
#Partially deleted in new
chrX	2949303	2949727	ENSG00000157399.14|ARSE|pc|chrX:2949303:2949727:-	0	-
#Deleted in new
chrX	2952830	2952992	ENSG00000157399.14|ARSE|pc|chrX:2952830:2952992:-	0	-
#Deleted in new
chrX	2953142	2953228	ENSG00000157399.14|ARSE|pc|chrX:2953142:2953228:-	0	-
#Deleted in new
chrX	2953142	2953265	ENSG00000157399.14|ARSE|pc|chrX:2953142:2953265:-	0	-
#Deleted in new
chrX	2958410	2958435	ENSG00000157399.14|ARSE|pc|chrX:2958410:2958435:-	0	-
#Deleted in new
chrX	2959602	2959888	ENSG00000157399.14|ARSE|pc|chrX:2959602:2959888:-	0	-
#Deleted in new
chrX	2960377	2960420	ENSG00000157399.14|ARSE|pc|chrX:2960377:2960420:-	0	-
#Deleted in new
chrX	2960377	2960468	ENSG00000157399.14|ARSE|pc|chrX:2960377:2960468:-	0	-
#Deleted in new
chrX	2964223	2964264	ENSG00000157399.14|ARSE|pc|chrX:2964223:2964264:-	0	-
#Deleted in new
chrX	2964223	2964270	ENSG00000157399.14|ARSE|pc|chrX:2964223:2964270:-	0	-
#Deleted in new
chrX	2964223	2964453	ENSG00000157399.14|ARSE|pc|chrX:2964223:2964453:-	0	-
#Deleted in new
chrX	2968148	2968310	ENSG00000157399.14|ARSE|pc|chrX:2968148:2968310:-	0	-
#Partially deleted in new
chrX	299096	303353	ENSG00000182378.13|PLCXD1|pc|chrX:299096:303353:+	0	+
#Partially deleted in new
chrX	299096	303356	ENSG00000182378.13|PLCXD1|pc|chrX:299096:303356:+	0	+
#Deleted in new
chrX	3006612	3006704	ENSG00000205667.2|ARSH|pc|chrX:3006612:3006704:+	0	+
#Deleted in new
chrX	3013046	3013172	ENSG00000205667.2|ARSH|pc|chrX:3013046:3013172:+	0	+
#Deleted in new
chrX	3014969	3015393	ENSG00000205667.2|ARSH|pc|chrX:3014969:3015393:+	0	+
#Partially deleted in new
chrX	30215559	30215655	ENSG00000099399.5|MAGEB2|pc|chrX:30215559:30215655:+	0	+
#Deleted in new
chrX	30230435	30230817	ENSG00000198798.5|MAGEB3|pc|chrX:30230435:30230817:+	0	+
#Deleted in new
chrX	30231516	30231618	ENSG00000198798.5|MAGEB3|pc|chrX:30231516:30231618:+	0	+
#Deleted in new
chrX	30232826	30232916	ENSG00000198798.5|MAGEB3|pc|chrX:30232826:30232916:+	0	+
#Deleted in new
chrX	30233261	30233363	ENSG00000198798.5|MAGEB3|pc|chrX:30233261:30233363:+	0	+
#Deleted in new
chrX	30246288	30246393	ENSG00000214107.7|MAGEB1|pc|chrX:30246288:30246393:+	0	+
#Deleted in new
chrX	30247153	30247256	ENSG00000214107.7|MAGEB1|pc|chrX:30247153:30247256:+	0	+
#Deleted in new
chrX	30247389	30247472	ENSG00000214107.7|MAGEB1|pc|chrX:30247389:30247472:+	0	+
#Duplicated in new
chrX	30250433	30252038	ENSG00000214107.7|MAGEB1|pc|chrX:30250433:30252038:+	0	+
#Deleted in new
chrX	3027312	3027475	ENSG00000205667.2|ARSH|pc|chrX:3027312:3027475:+	0	+
#Deleted in new
chrX	302836	303353	ENSG00000182378.13|PLCXD1|pc|chrX:302836:303353:+	0	+
#Partially deleted in new
chrX	30305673	30305855	ENSG00000169297.7|NR0B1|pc|chrX:30305673:30305855:-	0	-
#Deleted in new
chrX	3033017	3033571	ENSG00000205667.2|ARSH|pc|chrX:3033017:3033571:+	0	+
#Deleted in new
chrX	3041470	3041663	ENSG00000062096.14|ARSF|pc|chrX:3041470:3041663:+	0	+
#Partially deleted in new
chrX	304528	305197	ENSG00000178605.13|GTPBP6|pc|chrX:304528:305197:-	0	-
#Partially deleted in new
chrX	304749	305197	ENSG00000178605.13|GTPBP6|pc|chrX:304749:305197:-	0	-
#Deleted in new
chrX	3066832	3066872	ENSG00000062096.14|ARSF|pc|chrX:3066832:3066872:+	0	+
#Deleted in new
chrX	30671634	30671894	ENSG00000229331.1|GK-IT1|lncRNA|chrX:30671634:30671894:+	0	+
#Deleted in new
chrX	30672029	30672166	ENSG00000229331.1|GK-IT1|lncRNA|chrX:30672029:30672166:+	0	+
#Deleted in new
chrX	30674301	30674466	ENSG00000198814.12|GK|pc|chrX:30674301:30674466:+	0	+
#Deleted in new
chrX	3068072	3068111	ENSG00000062096.14|ARSF|pc|chrX:3068072:3068111:+	0	+
#Deleted in new
chrX	30721581	30721932	ENSG00000241886.1|AC112496.1|lncRNA|chrX:30721581:30721932:+	0	+
#Deleted in new
chrX	3080890	3081013	ENSG00000062096.14|ARSF|pc|chrX:3080890:3081013:+	0	+
#Deleted in new
chrX	30834622	30834763	ENSG00000231542.1|TAB3-AS1|lncRNA|chrX:30834622:30834763:+	0	+
#Deleted in new
chrX	3084242	3084666	ENSG00000062096.14|ARSF|pc|chrX:3084242:3084666:+	0	+
#Deleted in new
chrX	3101086	3101221	ENSG00000062096.14|ARSF|pc|chrX:3101086:3101221:+	0	+
#Deleted in new
chrX	3103761	3103924	ENSG00000062096.14|ARSF|pc|chrX:3103761:3103924:+	0	+
#Partially deleted in new
chrX	31097676	31098183	ENSG00000198947.15|DMD|pc|chrX:31097676:31098183:-	0	-
#Partially deleted in new
chrX	3112173	3112706	ENSG00000062096.14|ARSF|pc|chrX:3112173:3112706:+	0	+
#Partially deleted in new
chrX	3112173	3112726	ENSG00000062096.14|ARSF|pc|chrX:3112173:3112726:+	0	+
#Partially deleted in new
chrX	311418	312463	ENSG00000178605.13|GTPBP6|pc|chrX:311418:312463:-	0	-
#Deleted in new
chrX	320989	321248	ENSG00000226179.6|LINC00685|lncRNA|chrX:320989:321248:+	0	+
#Deleted in new
chrX	32151389	32151426	ENSG00000198947.15|DMD|pc|chrX:32151389:32151426:-	0	-
#Deleted in new
chrX	321682	321851	ENSG00000226179.6|LINC00685|lncRNA|chrX:321682:321851:+	0	+
#Deleted in new
chrX	3271819	3271918	ENSG00000228459.3|LINC01546|lncRNA|chrX:3271819:3271918:+	0	+
#Deleted in new
chrX	3272296	3272372	ENSG00000228459.3|LINC01546|lncRNA|chrX:3272296:3272372:+	0	+
#Deleted in new
chrX	32754939	32754989	ENSG00000236828.1|DMD-AS3|lncRNA|chrX:32754939:32754989:+	0	+
#Deleted in new
chrX	3284154	3284653	ENSG00000228459.3|LINC01546|lncRNA|chrX:3284154:3284653:+	0	+
#Deleted in new
chrX	33085900	33085927	ENSG00000198947.15|DMD|pc|chrX:33085900:33085927:-	0	-
#Partially deleted in new
chrX	33159194	33159597	ENSG00000198947.15|DMD|pc|chrX:33159194:33159597:-	0	-
#Deleted in new
chrX	3320007	3324975	ENSG00000101825.7|MXRA5|pc|chrX:3320007:3324975:-	0	-
#Deleted in new
chrX	3330643	3330773	ENSG00000101825.7|MXRA5|pc|chrX:3330643:3330773:-	0	-
#Deleted in new
chrX	333962	334517	ENSG00000167393.17|PPP2R3B|pc|chrX:333962:334517:-	0	-
#Deleted in new
chrX	334234	334517	ENSG00000167393.17|PPP2R3B|pc|chrX:334234:334517:-	0	-
#Split in new
chrX	334238	338710	ENSG00000167393.17|PPP2R3B|pc|chrX:334238:338710:-	0	-
#Deleted in new
chrX	3346514	3346641	ENSG00000101825.7|MXRA5|pc|chrX:3346514:3346641:-	0	-
#Deleted in new
chrX	33742117	33742134	ENSG00000233928.5|AL591501.1|lncRNA|chrX:33742117:33742134:+	0	+
#Deleted in new
chrX	33942014	33942235	ENSG00000233928.5|AL591501.1|lncRNA|chrX:33942014:33942235:+	0	+
#Deleted in new
chrX	33942014	33942280	ENSG00000233928.5|AL591501.1|lncRNA|chrX:33942014:33942280:+	0	+
#Partially deleted in new
chrX	341306	341711	ENSG00000167393.17|PPP2R3B|pc|chrX:341306:341711:-	0	-
#Partially deleted in new
chrX	341306	341931	ENSG00000167393.17|PPP2R3B|pc|chrX:341306:341931:-	0	-
#Partially deleted in new
chrX	341882	342237	ENSG00000167393.17|PPP2R3B|pc|chrX:341882:342237:-	0	-
#Deleted in new
chrX	34206724	34206817	ENSG00000233571.1|AL592043.1|lncRNA|chrX:34206724:34206817:-	0	-
#Deleted in new
chrX	34415180	34415537	ENSG00000233571.1|AL592043.1|lncRNA|chrX:34415180:34415537:-	0	-
#Partially deleted in new
chrX	344895	345672	ENSG00000167393.17|PPP2R3B|pc|chrX:344895:345672:-	0	-
#Deleted in new
chrX	35798341	35798418	ENSG00000189023.10|MAGEB16|pc|chrX:35798341:35798418:+	0	+
#Deleted in new
chrX	35798341	35798554	ENSG00000189023.10|MAGEB16|pc|chrX:35798341:35798554:+	0	+
#Deleted in new
chrX	35798790	35798852	ENSG00000189023.10|MAGEB16|pc|chrX:35798790:35798852:+	0	+
#Deleted in new
chrX	35801320	35801374	ENSG00000189023.10|MAGEB16|pc|chrX:35801320:35801374:+	0	+
#Partially deleted in new
chrX	3604369	3608945	ENSG00000183943.5|PRKX|pc|chrX:3604369:3608945:-	0	-
#Deleted in new
chrX	3608624	3608945	ENSG00000183943.5|PRKX|pc|chrX:3608624:3608945:-	0	-
#Deleted in new
chrX	3610950	3611334	ENSG00000183943.5|PRKX|pc|chrX:3610950:3611334:-	0	-
#Deleted in new
chrX	3611221	3611334	ENSG00000183943.5|PRKX|pc|chrX:3611221:3611334:-	0	-
#Deleted in new
chrX	361404	361516	ENSG00000167393.17|PPP2R3B|pc|chrX:361404:361516:-	0	-
#Deleted in new
chrX	361404	361590	ENSG00000167393.17|PPP2R3B|pc|chrX:361404:361590:-	0	-
#Deleted in new
chrX	36144560	36144809	ENSG00000165164.13|CFAP47|pc|chrX:36144560:36144809:+	0	+
#Deleted in new
chrX	36144560	36145070	ENSG00000165164.13|CFAP47|pc|chrX:36144560:36145070:+	0	+
#Deleted in new
chrX	362254	362332	ENSG00000167393.17|PPP2R3B|pc|chrX:362254:362332:-	0	-
#Deleted in new
chrX	36365625	36365802	ENSG00000226484.2|AL606516.1|lncRNA|chrX:36365625:36365802:-	0	-
#Deleted in new
chrX	36367920	36368097	ENSG00000226484.2|AL606516.1|lncRNA|chrX:36367920:36368097:-	0	-
#Deleted in new
chrX	36413914	36413949	ENSG00000226484.2|AL606516.1|lncRNA|chrX:36413914:36413949:-	0	-
#Deleted in new
chrX	36428985	36429042	ENSG00000226484.2|AL606516.1|lncRNA|chrX:36428985:36429042:-	0	-
#Deleted in new
chrX	36431029	36431470	ENSG00000226484.2|AL606516.1|lncRNA|chrX:36431029:36431470:-	0	-
#Deleted in new
chrX	36439527	36440292	ENSG00000226484.2|AL606516.1|lncRNA|chrX:36439527:36440292:-	0	-
#Deleted in new
chrX	3659486	3659538	ENSG00000236188.1|PRKX-AS1|lncRNA|chrX:3659486:3659538:+	0	+
#Deleted in new
chrX	3667281	3667486	ENSG00000236188.1|PRKX-AS1|lncRNA|chrX:3667281:3667486:+	0	+
#Deleted in new
chrX	3667933	3668192	ENSG00000236188.1|PRKX-AS1|lncRNA|chrX:3667933:3668192:+	0	+
#Deleted in new
chrX	3670178	3670215	ENSG00000183943.5|PRKX|pc|chrX:3670178:3670215:-	0	-
#Deleted in new
chrX	3713087	3713608	ENSG00000183943.5|PRKX|pc|chrX:3713087:3713608:-	0	-
#Deleted in new
chrX	37386598	37386689	ENSG00000130962.17|PRRG1|pc|chrX:37386598:37386689:+	0	+
#Deleted in new
chrX	37836756	37837359	ENSG00000165169.10|DYNLT3|pc|chrX:37836756:37837359:-	0	-
#Deleted in new
chrX	37949266	37949405	ENSG00000259977.1|AL121578.3|lncRNA|chrX:37949266:37949405:+	0	+
#Deleted in new
chrX	3817527	3817778	ENSG00000205664.10|BX890604.1|lncRNA|chrX:3817527:3817778:-	0	-
#Deleted in new
chrX	3817534	3817778	ENSG00000205664.10|BX890604.1|lncRNA|chrX:3817534:3817778:-	0	-
#Deleted in new
chrX	3818441	3818500	ENSG00000205664.10|BX890604.1|lncRNA|chrX:3818441:3818500:-	0	-
#Deleted in new
chrX	3818656	3818703	ENSG00000205664.10|BX890604.1|lncRNA|chrX:3818656:3818703:-	0	-
#Deleted in new
chrX	3821680	3822285	ENSG00000205664.10|BX890604.1|lncRNA|chrX:3821680:3822285:-	0	-
#Partially deleted in new
chrX	38223421	38223667	ENSG00000226679.1|AL606748.1|lncRNA|chrX:38223421:38223667:+	0	+
#Deleted in new
chrX	3822373	3822571	ENSG00000205664.10|BX890604.1|lncRNA|chrX:3822373:3822571:-	0	-
#Deleted in new
chrX	3822373	3822580	ENSG00000205664.10|BX890604.1|lncRNA|chrX:3822373:3822580:-	0	-
#Deleted in new
chrX	3824233	3824598	ENSG00000205664.10|BX890604.1|lncRNA|chrX:3824233:3824598:-	0	-
#Deleted in new
chrX	3843340	3843566	ENSG00000205664.10|BX890604.1|lncRNA|chrX:3843340:3843566:-	0	-
#Deleted in new
chrX	3843340	3843857	ENSG00000205664.10|BX890604.1|lncRNA|chrX:3843340:3843857:-	0	-
#Deleted in new
chrX	3853009	3854927	ENSG00000234449.2|FAM239A|lncRNA|chrX:3853009:3854927:-	0	-
#Deleted in new
chrX	3854348	3854927	ENSG00000234449.2|FAM239A|lncRNA|chrX:3854348:3854927:-	0	-
#Deleted in new
chrX	3860789	3860996	ENSG00000234449.2|FAM239A|lncRNA|chrX:3860789:3860996:-	0	-
#Deleted in new
chrX	3864397	3865142	ENSG00000234449.2|FAM239A|lncRNA|chrX:3864397:3865142:-	0	-
#Deleted in new
chrX	386979	387290	ENSG00000281849.3|AL732314.6|lncRNA|chrX:386979:387290:+	0	+
#Deleted in new
chrX	38789087	38789194	ENSG00000235806.1|AF241728.1|lncRNA|chrX:38789087:38789194:+	0	+
#Deleted in new
chrX	38798490	38798598	ENSG00000235806.1|AF241728.1|lncRNA|chrX:38798490:38798598:+	0	+
#Deleted in new
chrX	3881764	3882317	ENSG00000234449.2|FAM239A|lncRNA|chrX:3881764:3882317:-	0	-
#Deleted in new
chrX	3891437	3893351	ENSG00000205663.5|FAM239B|lncRNA|chrX:3891437:3893351:-	0	-
#Deleted in new
chrX	3893291	3893351	ENSG00000205663.5|FAM239B|lncRNA|chrX:3893291:3893351:-	0	-
#Deleted in new
chrX	3899215	3899422	ENSG00000205663.5|FAM239B|lncRNA|chrX:3899215:3899422:-	0	-
#Deleted in new
chrX	3920193	3920746	ENSG00000205663.5|FAM239B|lncRNA|chrX:3920193:3920746:-	0	-
#Deleted in new
chrX	3929868	3931782	ENSG00000205662.2|FAM239C|lncRNA|chrX:3929868:3931782:-	0	-
#Deleted in new
chrX	3937651	3937855	ENSG00000205662.2|FAM239C|lncRNA|chrX:3937651:3937855:-	0	-
#Deleted in new
chrX	39379050	39379226	ENSG00000236747.1|LINC01282|lncRNA|chrX:39379050:39379226:-	0	-
#Partially deleted in new
chrX	39391613	39391774	ENSG00000236747.1|LINC01282|lncRNA|chrX:39391613:39391774:-	0	-
#Deleted in new
chrX	39434754	39434824	ENSG00000234191.1|AC091808.1|lncRNA|chrX:39434754:39434824:-	0	-
#Deleted in new
chrX	40285528	40287720	ENSG00000236393.1|AC091806.1|lncRNA|chrX:40285528:40287720:+	0	+
#Deleted in new
chrX	405406	405579	ENSG00000281849.3|AL732314.6|lncRNA|chrX:405406:405579:+	0	+
#Deleted in new
chrX	40579706	40579747	ENSG00000182220.14|ATP6AP2|pc|chrX:40579706:40579747:+	0	+
#Partially deleted in new
chrX	40595853	40595947	ENSG00000182220.14|ATP6AP2|pc|chrX:40595853:40595947:+	0	+
#Deleted in new
chrX	40598935	40599018	ENSG00000182220.14|ATP6AP2|pc|chrX:40598935:40599018:+	0	+
#Partially deleted in new
chrX	40629032	40630162	ENSG00000185753.12|CXorf38|pc|chrX:40629032:40630162:-	0	-
#Partially deleted in new
chrX	40639008	40640320	ENSG00000185753.12|CXorf38|pc|chrX:40639008:40640320:-	0	-
#Deleted in new
chrX	40738192	40738701	ENSG00000234636.2|MED14OS|pc|chrX:40738192:40738701:+	0	+
#Deleted in new
chrX	41275738	41275883	ENSG00000223714.1|AL109797.1|lncRNA|chrX:41275738:41275883:+	0	+
#Deleted in new
chrX	41276088	41276778	ENSG00000223714.1|AL109797.1|lncRNA|chrX:41276088:41276778:+	0	+
#Deleted in new
chrX	41336082	41336159	ENSG00000215301.9|DDX3X|pc|chrX:41336082:41336159:+	0	+
#Deleted in new
chrX	41337690	41338509	ENSG00000215301.9|DDX3X|pc|chrX:41337690:41338509:+	0	+
#Deleted in new
chrX	41357832	41357939	ENSG00000215301.9|DDX3X|pc|chrX:41357832:41357939:+	0	+
#Deleted in new
chrX	41357832	41357990	ENSG00000215301.9|DDX3X|pc|chrX:41357832:41357990:+	0	+
#Deleted in new
chrX	41357832	41358000	ENSG00000215301.9|DDX3X|pc|chrX:41357832:41358000:+	0	+
#Deleted in new
chrX	41364226	41364417	ENSG00000215301.9|DDX3X|pc|chrX:41364226:41364417:+	0	+
#Deleted in new
chrX	41364273	41364472	ENSG00000215301.9|DDX3X|pc|chrX:41364273:41364472:+	0	+
#Deleted in new
chrX	41728647	41728771	ENSG00000171657.5|GPR82|pc|chrX:41728647:41728771:+	0	+
#Deleted in new
chrX	419156	419362	ENSG00000280767.3|AL732314.4|lncRNA|chrX:419156:419362:+	0	+
#Deleted in new
chrX	421671	421980	ENSG00000280767.3|AL732314.4|lncRNA|chrX:421671:421980:+	0	+
#Deleted in new
chrX	42252458	42252554	ENSG00000231772.5|Z93403.1|lncRNA|chrX:42252458:42252554:+	0	+
#Deleted in new
chrX	42254711	42254808	ENSG00000231772.5|Z93403.1|lncRNA|chrX:42254711:42254808:+	0	+
#Deleted in new
chrX	42285129	42285925	ENSG00000283737.1|AL023875.1|lncRNA|chrX:42285129:42285925:+	0	+
#Deleted in new
chrX	42285228	42285603	ENSG00000283737.1|AL023875.1|lncRNA|chrX:42285228:42285603:+	0	+
#Deleted in new
chrX	42422464	42422587	ENSG00000231772.5|Z93403.1|lncRNA|chrX:42422464:42422587:+	0	+
#Deleted in new
chrX	42422973	42423109	ENSG00000231772.5|Z93403.1|lncRNA|chrX:42422973:42423109:+	0	+
#Deleted in new
chrX	42456577	42456721	ENSG00000231772.5|Z93403.1|lncRNA|chrX:42456577:42456721:+	0	+
#Deleted in new
chrX	42581218	42581371	ENSG00000231772.5|Z93403.1|lncRNA|chrX:42581218:42581371:+	0	+
#Deleted in new
chrX	42582513	42582688	ENSG00000231772.5|Z93403.1|lncRNA|chrX:42582513:42582688:+	0	+
#Deleted in new
chrX	43176993	43177205	ENSG00000224294.1|PINCR|lncRNA|chrX:43176993:43177205:+	0	+
#Deleted in new
chrX	43190591	43190723	ENSG00000224294.1|PINCR|lncRNA|chrX:43190591:43190723:+	0	+
#Deleted in new
chrX	43196196	43196369	ENSG00000224294.1|PINCR|lncRNA|chrX:43196196:43196369:+	0	+
#Deleted in new
chrX	43197315	43197375	ENSG00000224294.1|PINCR|lncRNA|chrX:43197315:43197375:+	0	+
#Split in new
chrX	43225029	43226598	ENSG00000224294.1|PINCR|lncRNA|chrX:43225029:43226598:+	0	+
#Deleted in new
chrX	43844455	43844645	ENSG00000069535.13|MAOB|pc|chrX:43844455:43844645:-	0	-
#Deleted in new
chrX	43844505	43844645	ENSG00000069535.13|MAOB|pc|chrX:43844505:43844645:-	0	-
#Deleted in new
chrX	43953318	43953402	ENSG00000236276.1|NDP-AS1|lncRNA|chrX:43953318:43953402:+	0	+
#Deleted in new
chrX	43960784	43960894	ENSG00000236276.1|NDP-AS1|lncRNA|chrX:43960784:43960894:+	0	+
#Deleted in new
chrX	45162309	45164249	ENSG00000147113.16|CXorf36|pc|chrX:45162309:45164249:-	0	-
#Deleted in new
chrX	45183250	45183344	ENSG00000229491.5|AC136489.1|lncRNA|chrX:45183250:45183344:+	0	+
#Deleted in new
chrX	45183250	45183429	ENSG00000229491.5|AC136489.1|lncRNA|chrX:45183250:45183429:+	0	+
#Deleted in new
chrX	45270596	45270741	ENSG00000229491.5|AC136489.1|lncRNA|chrX:45270596:45270741:+	0	+
#Deleted in new
chrX	45320457	45320591	ENSG00000229491.5|AC136489.1|lncRNA|chrX:45320457:45320591:+	0	+
#Deleted in new
chrX	45321505	45321628	ENSG00000229491.5|AC136489.1|lncRNA|chrX:45321505:45321628:+	0	+
#Deleted in new
chrX	45333273	45333557	ENSG00000229491.5|AC136489.1|lncRNA|chrX:45333273:45333557:+	0	+
#Deleted in new
chrX	45333509	45333917	ENSG00000229491.5|AC136489.1|lncRNA|chrX:45333509:45333917:+	0	+
#Deleted in new
chrX	45521607	45521848	ENSG00000229563.6|LINC01204|lncRNA|chrX:45521607:45521848:+	0	+
#Deleted in new
chrX	45521607	45523644	ENSG00000229563.6|LINC01204|lncRNA|chrX:45521607:45523644:+	0	+
#Deleted in new
chrX	45629458	45629634	ENSG00000229563.6|LINC01204|lncRNA|chrX:45629458:45629634:+	0	+
#Deleted in new
chrX	45629905	45629983	ENSG00000229563.6|LINC01204|lncRNA|chrX:45629905:45629983:+	0	+
#Deleted in new
chrX	45630072	45630202	ENSG00000229563.6|LINC01204|lncRNA|chrX:45630072:45630202:+	0	+
#Deleted in new
chrX	45916989	45917040	ENSG00000234613.1|AL031584.2|lncRNA|chrX:45916989:45917040:-	0	-
#Deleted in new
chrX	4627199	4628189	ENSG00000236513.1|AC074035.1|lncRNA|chrX:4627199:4628189:-	0	-
#Deleted in new
chrX	4630221	4630350	ENSG00000236513.1|AC074035.1|lncRNA|chrX:4630221:4630350:-	0	-
#Deleted in new
chrX	4633507	4633572	ENSG00000236513.1|AC074035.1|lncRNA|chrX:4633507:4633572:-	0	-
#Deleted in new
chrX	46446856	46447346	ENSG00000147121.15|KRBOX4|pc|chrX:46446856:46447346:+	0	+
#Deleted in new
chrX	46447291	46447346	ENSG00000147121.15|KRBOX4|pc|chrX:46447291:46447346:+	0	+
#Deleted in new
chrX	46447293	46447346	ENSG00000147121.15|KRBOX4|pc|chrX:46447293:46447346:+	0	+
#Deleted in new
chrX	46447296	46447346	ENSG00000147121.15|KRBOX4|pc|chrX:46447296:46447346:+	0	+
#Deleted in new
chrX	46448199	46448310	ENSG00000147121.15|KRBOX4|pc|chrX:46448199:46448310:+	0	+
#Deleted in new
chrX	46448199	46448668	ENSG00000147121.15|KRBOX4|pc|chrX:46448199:46448668:+	0	+
#Deleted in new
chrX	46448232	46448310	ENSG00000147121.15|KRBOX4|pc|chrX:46448232:46448310:+	0	+
#Deleted in new
chrX	46450430	46450475	ENSG00000147121.15|KRBOX4|pc|chrX:46450430:46450475:+	0	+
#Duplicated in new
chrX	46463197	46463449	ENSG00000147121.15|KRBOX4|pc|chrX:46463197:46463449:+	0	+
#Deleted in new
chrX	46471141	46471185	ENSG00000147121.15|KRBOX4|pc|chrX:46471141:46471185:+	0	+
#Deleted in new
chrX	46472024	46472526	ENSG00000147121.15|KRBOX4|pc|chrX:46472024:46472526:+	0	+
#Duplicated in new
chrX	46472749	46473669	ENSG00000147121.15|KRBOX4|pc|chrX:46472749:46473669:+	0	+
#Duplicated in new
chrX	46472752	46473594	ENSG00000147121.15|KRBOX4|pc|chrX:46472752:46473594:+	0	+
#Deleted in new
chrX	46497121	46497422	ENSG00000147121.15|KRBOX4|pc|chrX:46497121:46497422:+	0	+
#Deleted in new
chrX	46522936	46523618	ENSG00000251192.7|ZNF674|pc|chrX:46522936:46523618:-	0	-
#Deleted in new
chrX	46522992	46523125	ENSG00000251192.7|ZNF674|pc|chrX:46522992:46523125:-	0	-
#Deleted in new
chrX	46522999	46523125	ENSG00000251192.7|ZNF674|pc|chrX:46522999:46523125:-	0	-
#Deleted in new
chrX	46525377	46525438	ENSG00000251192.7|ZNF674|pc|chrX:46525377:46525438:-	0	-
#Partially deleted in new
chrX	46527722	46528445	ENSG00000251192.7|ZNF674|pc|chrX:46527722:46528445:-	0	-
#Partially deleted in new
chrX	46528782	46529668	ENSG00000251192.7|ZNF674|pc|chrX:46528782:46529668:-	0	-
#Deleted in new
chrX	46542072	46542116	ENSG00000251192.7|ZNF674|pc|chrX:46542072:46542116:-	0	-
#Deleted in new
chrX	46544500	46544611	ENSG00000251192.7|ZNF674|pc|chrX:46544500:46544611:-	0	-
#Deleted in new
chrX	46545370	46545420	ENSG00000251192.7|ZNF674|pc|chrX:46545370:46545420:-	0	-
#Deleted in new
chrX	46545370	46545424	ENSG00000251192.7|ZNF674|pc|chrX:46545370:46545424:-	0	-
#Deleted in new
chrX	46545370	46545441	ENSG00000251192.7|ZNF674|pc|chrX:46545370:46545441:-	0	-
#Deleted in new
chrX	46545370	46545457	ENSG00000251192.7|ZNF674|pc|chrX:46545370:46545457:-	0	-
#Deleted in new
chrX	46545492	46545627	ENSG00000230844.2|ZNF674-AS1|lncRNA|chrX:46545492:46545627:+	0	+
#Deleted in new
chrX	46545510	46545627	ENSG00000230844.2|ZNF674-AS1|lncRNA|chrX:46545510:46545627:+	0	+
#Deleted in new
chrX	46546465	46546563	ENSG00000230844.2|ZNF674-AS1|lncRNA|chrX:46546465:46546563:+	0	+
#Deleted in new
chrX	46546465	46548408	ENSG00000230844.2|ZNF674-AS1|lncRNA|chrX:46546465:46548408:+	0	+
#Deleted in new
chrX	46547424	46547881	ENSG00000230844.2|ZNF674-AS1|lncRNA|chrX:46547424:46547881:+	0	+
#Deleted in new
chrX	46887416	46887692	ENSG00000204904.7|LINC01545|lncRNA|chrX:46887416:46887692:-	0	-
#Deleted in new
chrX	46887420	46887692	ENSG00000204904.7|LINC01545|lncRNA|chrX:46887420:46887692:-	0	-
#Deleted in new
chrX	46890292	46890379	ENSG00000204904.7|LINC01545|lncRNA|chrX:46890292:46890379:-	0	-
#Deleted in new
chrX	46899603	46899703	ENSG00000204904.7|LINC01545|lncRNA|chrX:46899603:46899703:-	0	-
#Partially deleted in new
chrX	47208561	47209687	ENSG00000130985.16|UBA1|pc|chrX:47208561:47209687:+	0	+
#Deleted in new
chrX	47297851	47298090	ENSG00000203402.2|AL591503.1|lncRNA|chrX:47297851:47298090:+	0	+
#Deleted in new
chrX	47298483	47298721	ENSG00000203402.2|AL591503.1|lncRNA|chrX:47298483:47298721:+	0	+
#Deleted in new
chrX	47482458	47482585	ENSG00000147124.12|ZNF41|pc|chrX:47482458:47482585:-	0	-
#Deleted in new
chrX	47482585	47482946	ENSG00000147124.12|ZNF41|pc|chrX:47482585:47482946:-	0	-
#Deleted in new
chrX	47483570	47484808	ENSG00000196741.5|LINC01560|lncRNA|chrX:47483570:47484808:+	0	+
#Deleted in new
chrX	47483570	47484823	ENSG00000196741.5|LINC01560|lncRNA|chrX:47483570:47484823:+	0	+
#Deleted in new
chrX	47589954	47590209	ENSG00000008056.13|SYN1|pc|chrX:47589954:47590209:-	0	-
#Deleted in new
chrX	47659894	47660111	ENSG00000267064.1|UXT-AS1|lncRNA|chrX:47659894:47660111:+	0	+
#Deleted in new
chrX	47836901	47836987	ENSG00000197779.13|ZNF81|pc|chrX:47836901:47836987:+	0	+
#Deleted in new
chrX	47836945	47837007	ENSG00000197779.13|ZNF81|pc|chrX:47836945:47837007:+	0	+
#Deleted in new
chrX	47836969	47836987	ENSG00000197779.13|ZNF81|pc|chrX:47836969:47836987:+	0	+
#Deleted in new
chrX	47842649	47842768	ENSG00000197779.13|ZNF81|pc|chrX:47842649:47842768:+	0	+
#Deleted in new
chrX	47846104	47846321	ENSG00000197779.13|ZNF81|pc|chrX:47846104:47846321:+	0	+
#Deleted in new
chrX	47846172	47846321	ENSG00000197779.13|ZNF81|pc|chrX:47846172:47846321:+	0	+
#Deleted in new
chrX	47860719	47861045	ENSG00000197779.13|ZNF81|pc|chrX:47860719:47861045:+	0	+
#Split in new
chrX	47914923	47922211	ENSG00000197779.13|ZNF81|pc|chrX:47914923:47922211:+	0	+
#Split in new
chrX	47914923	47922256	ENSG00000197779.13|ZNF81|pc|chrX:47914923:47922256:+	0	+
#Deleted in new
chrX	47988523	47988617	ENSG00000147118.11|ZNF182|pc|chrX:47988523:47988617:-	0	-
#Deleted in new
chrX	48034049	48034159	ENSG00000221994.10|ZNF630|pc|chrX:48034049:48034159:-	0	-
#Deleted in new
chrX	48037062	48037181	ENSG00000221994.10|ZNF630|pc|chrX:48037062:48037181:-	0	-
#Deleted in new
chrX	48043749	48043776	ENSG00000221994.10|ZNF630|pc|chrX:48043749:48043776:-	0	-
#Deleted in new
chrX	48046202	48046310	ENSG00000221994.10|ZNF630|pc|chrX:48046202:48046310:-	0	-
#Deleted in new
chrX	48056309	48056432	ENSG00000277541.1|ZNF630-AS1|lncRNA|chrX:48056309:48056432:+	0	+
#Deleted in new
chrX	48057266	48057347	ENSG00000221994.10|ZNF630|pc|chrX:48057266:48057347:-	0	-
#Deleted in new
chrX	48061790	48061805	ENSG00000221994.10|ZNF630|pc|chrX:48061790:48061805:-	0	-
#Deleted in new
chrX	48066309	48066583	ENSG00000277541.1|ZNF630-AS1|lncRNA|chrX:48066309:48066583:+	0	+
#Deleted in new
chrX	48066871	48067060	ENSG00000221994.10|ZNF630|pc|chrX:48066871:48067060:-	0	-
#Deleted in new
chrX	48066871	48067061	ENSG00000221994.10|ZNF630|pc|chrX:48066871:48067061:-	0	-
#Deleted in new
chrX	48071064	48071116	ENSG00000221994.10|ZNF630|pc|chrX:48071064:48071116:-	0	-
#Deleted in new
chrX	48071064	48071141	ENSG00000221994.10|ZNF630|pc|chrX:48071064:48071141:-	0	-
#Deleted in new
chrX	48071266	48071658	ENSG00000221994.10|ZNF630|pc|chrX:48071266:48071658:-	0	-
#Deleted in new
chrX	48071465	48071634	ENSG00000221994.10|ZNF630|pc|chrX:48071465:48071634:-	0	-
#Partially deleted in new
chrX	48186219	48186856	ENSG00000165583.14|SSX5|pc|chrX:48186219:48186856:-	0	-
#Deleted in new
chrX	48196730	48196763	ENSG00000165583.14|SSX5|pc|chrX:48196730:48196763:-	0	-
#Split in new
chrX	48266853	48267444	ENSG00000126752.7|SSX1|pc|chrX:48266853:48267444:+	0	+
#Deleted in new
chrX	48333674	48333764	ENSG00000230100.1|AL606490.3|lncRNA|chrX:48333674:48333764:-	0	-
#Deleted in new
chrX	48334259	48334439	ENSG00000230100.1|AL606490.3|lncRNA|chrX:48334259:48334439:-	0	-
#Duplicated in new
chrX	48346625	48347035	ENSG00000165584.15|SSX3|pc|chrX:48346625:48347035:-	0	-
#Deleted in new
chrX	48348256	48348448	ENSG00000165584.15|SSX3|pc|chrX:48348256:48348448:-	0	-
#Deleted in new
chrX	48349539	48349587	ENSG00000165584.15|SSX3|pc|chrX:48349539:48349587:-	0	-
#Duplicated in new
chrX	48352099	48352247	ENSG00000165584.15|SSX3|pc|chrX:48352099:48352247:-	0	-
#Deleted in new
chrX	48356633	48356666	ENSG00000165584.15|SSX3|pc|chrX:48356633:48356666:-	0	-
#Deleted in new
chrX	48356633	48356707	ENSG00000165584.15|SSX3|pc|chrX:48356633:48356707:-	0	-
#Deleted in new
chrX	48383515	48383564	ENSG00000268009.5|SSX4|pc|chrX:48383515:48383564:+	0	+
#Deleted in new
chrX	48383526	48383564	ENSG00000268009.5|SSX4|pc|chrX:48383526:48383564:+	0	+
#Deleted in new
chrX	48411861	48411899	ENSG00000269791.5|SSX4B|pc|chrX:48411861:48411899:-	0	-
#Deleted in new
chrX	48411861	48411910	ENSG00000269791.5|SSX4B|pc|chrX:48411861:48411910:-	0	-
#Deleted in new
chrX	48506522	48507055	ENSG00000224292.1|AF196972.1|lncRNA|chrX:48506522:48507055:-	0	-
#Deleted in new
chrX	48568013	48568180	ENSG00000204620.3|AC115618.1|lncRNA|chrX:48568013:48568180:-	0	-
#Deleted in new
chrX	48579773	48580040	ENSG00000228343.1|AC115618.2|lncRNA|chrX:48579773:48580040:-	0	-
#Deleted in new
chrX	48580740	48581165	ENSG00000279528.1|AC115618.3|lncRNA|chrX:48580740:48581165:+	0	+
#Deleted in new
chrX	48580974	48581157	ENSG00000228343.1|AC115618.2|lncRNA|chrX:48580974:48581157:-	0	-
#Deleted in new
chrX	48590041	48590287	ENSG00000101940.17|WDR13|pc|chrX:48590041:48590287:+	0	+
#Deleted in new
chrX	48676595	48676748	ENSG00000015285.10|WAS|pc|chrX:48676595:48676748:+	0	+
#Deleted in new
chrX	48737038	48737163	ENSG00000232828.1|AC231533.1|lncRNA|chrX:48737038:48737163:-	0	-
#Partially deleted in new
chrX	48813352	48814566	ENSG00000094631.18|HDAC6|pc|chrX:48813352:48814566:+	0	+
#Partially deleted in new
chrX	48895351	48895501	ENSG00000126768.12|TIMM17B|pc|chrX:48895351:48895501:-	0	-
#Partially deleted in new
chrX	48895351	48895972	ENSG00000126768.12|TIMM17B|pc|chrX:48895351:48895972:-	0	-
#Deleted in new
chrX	48901518	48901606	ENSG00000102103.15|PQBP1|pc|chrX:48901518:48901606:+	0	+
#Deleted in new
chrX	48936190	48936339	ENSG00000068308.13|OTUD5|pc|chrX:48936190:48936339:-	0	-
#Deleted in new
chrX	48936190	48936358	ENSG00000068308.13|OTUD5|pc|chrX:48936190:48936358:-	0	-
#Deleted in new
chrX	48980757	48980808	ENSG00000068400.13|GRIPAP1|pc|chrX:48980757:48980808:-	0	-
#Deleted in new
chrX	49000565	49000689	ENSG00000068400.13|GRIPAP1|pc|chrX:49000565:49000689:-	0	-
#Deleted in new
chrX	49100204	49100554	ENSG00000196998.17|WDR45|pc|chrX:49100204:49100554:-	0	-
#Deleted in new
chrX	49100581	49100677	ENSG00000196998.17|WDR45|pc|chrX:49100581:49100677:-	0	-
#Deleted in new
chrX	49100581	49101060	ENSG00000196998.17|WDR45|pc|chrX:49100581:49101060:-	0	-
#Deleted in new
chrX	49100581	49101144	ENSG00000196998.17|WDR45|pc|chrX:49100581:49101144:-	0	-
#Deleted in new
chrX	49101049	49101121	ENSG00000196998.17|WDR45|pc|chrX:49101049:49101121:-	0	-
#Deleted in new
chrX	49101049	49101144	ENSG00000196998.17|WDR45|pc|chrX:49101049:49101144:-	0	-
#Deleted in new
chrX	49101049	49101170	ENSG00000196998.17|WDR45|pc|chrX:49101049:49101170:-	0	-
#Partially deleted in new
chrX	49163995	49164029	ENSG00000269313.5|MAGIX|pc|chrX:49163995:49164029:+	0	+
#Deleted in new
chrX	49202171	49202454	ENSG00000237341.1|SYP-AS1|lncRNA|chrX:49202171:49202454:+	0	+
#Deleted in new
chrX	49301350	49301461	ENSG00000049769.12|PPP1R3F|pc|chrX:49301350:49301461:+	0	+
#Deleted in new
chrX	49303668	49303753	ENSG00000215274.5|GAGE10|pc|chrX:49303668:49303753:+	0	+
#Deleted in new
chrX	49304851	49304940	ENSG00000215274.5|GAGE10|pc|chrX:49304851:49304940:+	0	+
#Deleted in new
chrX	49305403	49305524	ENSG00000215274.5|GAGE10|pc|chrX:49305403:49305524:+	0	+
#Deleted in new
chrX	49317162	49317288	ENSG00000215274.5|GAGE10|pc|chrX:49317162:49317288:+	0	+
#Deleted in new
chrX	49319727	49319844	ENSG00000215274.5|GAGE10|pc|chrX:49319727:49319844:+	0	+
#Deleted in new
chrX	49322056	49322144	ENSG00000224659.2|GAGE12J|pc|chrX:49322056:49322144:+	0	+
#Deleted in new
chrX	49323185	49323277	ENSG00000224659.2|GAGE12J|pc|chrX:49323185:49323277:+	0	+
#Deleted in new
chrX	49323742	49323863	ENSG00000224659.2|GAGE12J|pc|chrX:49323742:49323863:+	0	+
#Deleted in new
chrX	49326689	49326815	ENSG00000224659.2|GAGE12J|pc|chrX:49326689:49326815:+	0	+
#Deleted in new
chrX	49329270	49329384	ENSG00000224659.2|GAGE12J|pc|chrX:49329270:49329384:+	0	+
#Deleted in new
chrX	49331615	49331689	ENSG00000274274.1|GAGE13|pc|chrX:49331615:49331689:+	0	+
#Deleted in new
chrX	49332729	49332821	ENSG00000274274.1|GAGE13|pc|chrX:49332729:49332821:+	0	+
#Deleted in new
chrX	49333286	49333407	ENSG00000274274.1|GAGE13|pc|chrX:49333286:49333407:+	0	+
#Deleted in new
chrX	49336246	49336372	ENSG00000274274.1|GAGE13|pc|chrX:49336246:49336372:+	0	+
#Deleted in new
chrX	49338835	49338952	ENSG00000274274.1|GAGE13|pc|chrX:49338835:49338952:+	0	+
#Deleted in new
chrX	49341191	49341255	ENSG00000275113.1|GAGE2E|pc|chrX:49341191:49341255:+	0	+
#Deleted in new
chrX	49342295	49342387	ENSG00000275113.1|GAGE2E|pc|chrX:49342295:49342387:+	0	+
#Deleted in new
chrX	49342852	49342973	ENSG00000275113.1|GAGE2E|pc|chrX:49342852:49342973:+	0	+
#Deleted in new
chrX	49345796	49345922	ENSG00000275113.1|GAGE2E|pc|chrX:49345796:49345922:+	0	+
#Deleted in new
chrX	49529868	49529985	ENSG00000236737.1|GAGE12B|pc|chrX:49529868:49529985:+	0	+
#Deleted in new
chrX	49532210	49532284	ENSG00000237671.3|GAGE12C|pc|chrX:49532210:49532284:+	0	+
#Deleted in new
chrX	49533323	49533415	ENSG00000237671.3|GAGE12C|pc|chrX:49533323:49533415:+	0	+
#Deleted in new
chrX	49533880	49534001	ENSG00000237671.3|GAGE12C|pc|chrX:49533880:49534001:+	0	+
#Deleted in new
chrX	49536823	49536949	ENSG00000237671.3|GAGE12C|pc|chrX:49536823:49536949:+	0	+
#Deleted in new
chrX	49539424	49539538	ENSG00000237671.3|GAGE12C|pc|chrX:49539424:49539538:+	0	+
#Deleted in new
chrX	49541766	49541840	ENSG00000227488.2|GAGE12D|pc|chrX:49541766:49541840:+	0	+
#Deleted in new
chrX	49542879	49542971	ENSG00000227488.2|GAGE12D|pc|chrX:49542879:49542971:+	0	+
#Deleted in new
chrX	49543436	49543557	ENSG00000227488.2|GAGE12D|pc|chrX:49543436:49543557:+	0	+
#Deleted in new
chrX	49546379	49546505	ENSG00000227488.2|GAGE12D|pc|chrX:49546379:49546505:+	0	+
#Deleted in new
chrX	49548980	49549094	ENSG00000227488.2|GAGE12D|pc|chrX:49548980:49549094:+	0	+
#Deleted in new
chrX	49551277	49551396	ENSG00000236362.8|GAGE12F|pc|chrX:49551277:49551396:+	0	+
#Deleted in new
chrX	49551332	49551396	ENSG00000216649.3|GAGE12E|pc|chrX:49551332:49551396:+	0	+
#Deleted in new
chrX	49552435	49552527	ENSG00000216649.3|GAGE12E|pc|chrX:49552435:49552527:+	0	+
#Deleted in new
chrX	49552992	49553113	ENSG00000216649.3|GAGE12E|pc|chrX:49552992:49553113:+	0	+
#Deleted in new
chrX	49555935	49556061	ENSG00000216649.3|GAGE12E|pc|chrX:49555935:49556061:+	0	+
#Deleted in new
chrX	49558532	49558649	ENSG00000216649.3|GAGE12E|pc|chrX:49558532:49558649:+	0	+
#Deleted in new
chrX	49560875	49560949	ENSG00000236362.8|GAGE12F|pc|chrX:49560875:49560949:+	0	+
#Deleted in new
chrX	49561988	49562080	ENSG00000236362.8|GAGE12F|pc|chrX:49561988:49562080:+	0	+
#Deleted in new
chrX	49562545	49562666	ENSG00000236362.8|GAGE12F|pc|chrX:49562545:49562666:+	0	+
#Deleted in new
chrX	49565494	49565620	ENSG00000236362.8|GAGE12F|pc|chrX:49565494:49565620:+	0	+
#Deleted in new
chrX	49568091	49568205	ENSG00000236362.8|GAGE12F|pc|chrX:49568091:49568205:+	0	+
#Deleted in new
chrX	49568091	49568218	ENSG00000236362.8|GAGE12F|pc|chrX:49568091:49568218:+	0	+
#Deleted in new
chrX	49570433	49570507	ENSG00000215269.5|GAGE12G|pc|chrX:49570433:49570507:+	0	+
#Deleted in new
chrX	49571546	49571638	ENSG00000215269.5|GAGE12G|pc|chrX:49571546:49571638:+	0	+
#Deleted in new
chrX	49572103	49572224	ENSG00000215269.5|GAGE12G|pc|chrX:49572103:49572224:+	0	+
#Deleted in new
chrX	49575047	49575173	ENSG00000215269.5|GAGE12G|pc|chrX:49575047:49575173:+	0	+
#Deleted in new
chrX	49577640	49577754	ENSG00000215269.5|GAGE12G|pc|chrX:49577640:49577754:+	0	+
#Deleted in new
chrX	49579982	49580056	ENSG00000224902.5|GAGE12H|pc|chrX:49579982:49580056:+	0	+
#Deleted in new
chrX	49581095	49581187	ENSG00000224902.5|GAGE12H|pc|chrX:49581095:49581187:+	0	+
#Deleted in new
chrX	49581652	49581773	ENSG00000224902.5|GAGE12H|pc|chrX:49581652:49581773:+	0	+
#Deleted in new
chrX	49584595	49584721	ENSG00000224902.5|GAGE12H|pc|chrX:49584595:49584721:+	0	+
#Deleted in new
chrX	49587187	49587301	ENSG00000224902.5|GAGE12H|pc|chrX:49587187:49587301:+	0	+
#Deleted in new
chrX	49589495	49589603	ENSG00000205777.17|GAGE1|pc|chrX:49589495:49589603:+	0	+
#Deleted in new
chrX	49589528	49589603	ENSG00000189064.8|GAGE2A|pc|chrX:49589528:49589603:+	0	+
#Deleted in new
chrX	49590642	49590731	ENSG00000189064.8|GAGE2A|pc|chrX:49590642:49590731:+	0	+
#Deleted in new
chrX	49591196	49591317	ENSG00000189064.8|GAGE2A|pc|chrX:49591196:49591317:+	0	+
#Deleted in new
chrX	49594117	49594243	ENSG00000189064.8|GAGE2A|pc|chrX:49594117:49594243:+	0	+
#Deleted in new
chrX	49596710	49596827	ENSG00000189064.8|GAGE2A|pc|chrX:49596710:49596827:+	0	+
#Deleted in new
chrX	49599024	49599127	ENSG00000205777.17|GAGE1|pc|chrX:49599024:49599127:+	0	+
#Deleted in new
chrX	49599061	49599127	ENSG00000205777.17|GAGE1|pc|chrX:49599061:49599127:+	0	+
#Deleted in new
chrX	49600166	49600258	ENSG00000205777.17|GAGE1|pc|chrX:49600166:49600258:+	0	+
#Deleted in new
chrX	49600174	49600258	ENSG00000205777.17|GAGE1|pc|chrX:49600174:49600258:+	0	+
#Deleted in new
chrX	49600723	49600844	ENSG00000205777.17|GAGE1|pc|chrX:49600723:49600844:+	0	+
#Deleted in new
chrX	49603667	49603793	ENSG00000205777.17|GAGE1|pc|chrX:49603667:49603793:+	0	+
#Deleted in new
chrX	49604997	49605140	ENSG00000205777.17|GAGE1|pc|chrX:49604997:49605140:+	0	+
#Deleted in new
chrX	49605992	49606109	ENSG00000205777.17|GAGE1|pc|chrX:49605992:49606109:+	0	+
#Deleted in new
chrX	49605992	49606355	ENSG00000205777.17|GAGE1|pc|chrX:49605992:49606355:+	0	+
#Partially deleted in new
chrX	49605992	49608534	ENSG00000205777.17|GAGE1|pc|chrX:49605992:49608534:+	0	+
#Partially deleted in new
chrX	49605992	49608536	ENSG00000205777.17|GAGE1|pc|chrX:49605992:49608536:+	0	+
#Deleted in new
chrX	49687449	49687563	ENSG00000068985.4|PAGE1|pc|chrX:49687449:49687563:-	0	-
#Deleted in new
chrX	49689417	49689543	ENSG00000068985.4|PAGE1|pc|chrX:49689417:49689543:-	0	-
#Deleted in new
chrX	49691248	49691374	ENSG00000068985.4|PAGE1|pc|chrX:49691248:49691374:-	0	-
#Deleted in new
chrX	49694098	49694201	ENSG00000068985.4|PAGE1|pc|chrX:49694098:49694201:-	0	-
#Deleted in new
chrX	49694707	49694778	ENSG00000068985.4|PAGE1|pc|chrX:49694707:49694778:-	0	-
#Deleted in new
chrX	49695868	49695993	ENSG00000068985.4|PAGE1|pc|chrX:49695868:49695993:-	0	-
#Deleted in new
chrX	49829259	49829296	ENSG00000101951.16|PAGE4|pc|chrX:49829259:49829296:+	0	+
#Deleted in new
chrX	49829302	49829351	ENSG00000101951.16|PAGE4|pc|chrX:49829302:49829351:+	0	+
#Partially deleted in new
chrX	49829347	49830506	ENSG00000101951.16|PAGE4|pc|chrX:49829347:49830506:+	0	+
#Partially deleted in new
chrX	49830398	49830506	ENSG00000101951.16|PAGE4|pc|chrX:49830398:49830506:+	0	+
#Partially deleted in new
chrX	49830996	49831084	ENSG00000101951.16|PAGE4|pc|chrX:49830996:49831084:+	0	+
#Partially deleted in new
chrX	49830996	49831331	ENSG00000101951.16|PAGE4|pc|chrX:49830996:49831331:+	0	+
#Deleted in new
chrX	49832524	49832650	ENSG00000101951.16|PAGE4|pc|chrX:49832524:49832650:+	0	+
#Deleted in new
chrX	49833845	49833967	ENSG00000101951.16|PAGE4|pc|chrX:49833845:49833967:+	0	+
#Deleted in new
chrX	49833845	49833973	ENSG00000101951.16|PAGE4|pc|chrX:49833845:49833973:+	0	+
#Partially deleted in new
chrX	50591694	50592144	ENSG00000158352.15|SHROOM4|pc|chrX:50591694:50592144:-	0	-
#Deleted in new
chrX	51095843	51095997	ENSG00000230317.1|LINC01284|lncRNA|chrX:51095843:51095997:-	0	-
#Deleted in new
chrX	51101556	51101617	ENSG00000230317.1|LINC01284|lncRNA|chrX:51101556:51101617:-	0	-
#Deleted in new
chrX	51108950	51108972	ENSG00000230317.1|LINC01284|lncRNA|chrX:51108950:51108972:-	0	-
#Deleted in new
chrX	51171327	51171400	ENSG00000230317.1|LINC01284|lncRNA|chrX:51171327:51171400:-	0	-
#Deleted in new
chrX	51465406	51465661	ENSG00000226530.1|AL158055.1|lncRNA|chrX:51465406:51465661:+	0	+
#Deleted in new
chrX	51502089	51502340	ENSG00000234766.1|LINC01496|lncRNA|chrX:51502089:51502340:-	0	-
#Deleted in new
chrX	51505731	51505793	ENSG00000234766.1|LINC01496|lncRNA|chrX:51505731:51505793:-	0	-
#Deleted in new
chrX	51505880	51505969	ENSG00000234766.1|LINC01496|lncRNA|chrX:51505880:51505969:-	0	-
#Deleted in new
chrX	51510947	51511005	ENSG00000234766.1|LINC01496|lncRNA|chrX:51510947:51511005:-	0	-
#Split in new
chrX	51681211	51682831	ENSG00000283093.1|CENPVL2|pc|chrX:51681211:51682831:-	0	-
#Split in new
chrX	51710511	51712131	ENSG00000223591.5|CENPVL1|pc|chrX:51710511:51712131:+	0	+
#Deleted in new
chrX	51803006	51803117	ENSG00000179222.17|MAGED1|pc|chrX:51803006:51803117:+	0	+
#Deleted in new
chrX	52053175	52053464	ENSG00000279750.3|AC239585.2|lncRNA|chrX:52053175:52053464:+	0	+
#Deleted in new
chrX	52053367	52053464	ENSG00000279750.3|AC239585.2|lncRNA|chrX:52053367:52053464:+	0	+
#Deleted in new
chrX	52053994	52054255	ENSG00000182776.4|AC239585.1|lncRNA|chrX:52053994:52054255:-	0	-
#Deleted in new
chrX	52054056	52054190	ENSG00000279750.3|AC239585.2|lncRNA|chrX:52054056:52054190:+	0	+
#Deleted in new
chrX	52054594	52054670	ENSG00000279750.3|AC239585.2|lncRNA|chrX:52054594:52054670:+	0	+
#Deleted in new
chrX	52054880	52054938	ENSG00000279750.3|AC239585.2|lncRNA|chrX:52054880:52054938:+	0	+
#Deleted in new
chrX	52054880	52055012	ENSG00000279750.3|AC239585.2|lncRNA|chrX:52054880:52055012:+	0	+
#Deleted in new
chrX	52055555	52055684	ENSG00000279750.3|AC239585.2|lncRNA|chrX:52055555:52055684:+	0	+
#Duplicated in new
chrX	52062365	52062664	ENSG00000187243.16|MAGED4B|pc|chrX:52062365:52062664:-	0	-
#Duplicated in new
chrX	52191430	52191729	ENSG00000154545.16|MAGED4|pc|chrX:52191430:52191729:+	0	+
#Deleted in new
chrX	52199839	52200100	ENSG00000179028.4|AC245177.1|lncRNA|chrX:52199839:52200100:+	0	+
#Deleted in new
chrX	52369029	52369214	ENSG00000155622.6|XAGE2|pc|chrX:52369029:52369214:+	0	+
#Deleted in new
chrX	52370006	52370095	ENSG00000155622.6|XAGE2|pc|chrX:52370006:52370095:+	0	+
#Deleted in new
chrX	52370566	52370672	ENSG00000155622.6|XAGE2|pc|chrX:52370566:52370672:+	0	+
#Deleted in new
chrX	52372543	52372669	ENSG00000155622.6|XAGE2|pc|chrX:52372543:52372669:+	0	+
#Deleted in new
chrX	52375568	52375680	ENSG00000155622.6|XAGE2|pc|chrX:52375568:52375680:+	0	+
#Deleted in new
chrX	52495675	52495909	ENSG00000204379.10|XAGE1A|pc|chrX:52495675:52495909:+	0	+
#Deleted in new
chrX	52495831	52495909	ENSG00000204379.10|XAGE1A|pc|chrX:52495831:52495909:+	0	+
#Deleted in new
chrX	52495876	52496229	ENSG00000204379.10|XAGE1A|pc|chrX:52495876:52496229:+	0	+
#Deleted in new
chrX	52497315	52497457	ENSG00000204379.10|XAGE1A|pc|chrX:52497315:52497457:+	0	+
#Deleted in new
chrX	52497315	52497473	ENSG00000204379.10|XAGE1A|pc|chrX:52497315:52497473:+	0	+
#Deleted in new
chrX	52497863	52498111	ENSG00000204379.10|XAGE1A|pc|chrX:52497863:52498111:+	0	+
#Deleted in new
chrX	52497984	52498111	ENSG00000204379.10|XAGE1A|pc|chrX:52497984:52498111:+	0	+
#Deleted in new
chrX	52500701	52500812	ENSG00000204379.10|XAGE1A|pc|chrX:52500701:52500812:+	0	+
#Deleted in new
chrX	52512076	52512187	ENSG00000204382.11|XAGE1B|pc|chrX:52512076:52512187:-	0	-
#Deleted in new
chrX	52512079	52512187	ENSG00000204382.11|XAGE1B|pc|chrX:52512079:52512187:-	0	-
#Deleted in new
chrX	52514777	52514904	ENSG00000204382.11|XAGE1B|pc|chrX:52514777:52514904:-	0	-
#Deleted in new
chrX	52514777	52515025	ENSG00000204382.11|XAGE1B|pc|chrX:52514777:52515025:-	0	-
#Deleted in new
chrX	52515167	52515573	ENSG00000204382.11|XAGE1B|pc|chrX:52515167:52515573:-	0	-
#Deleted in new
chrX	52515415	52515573	ENSG00000204382.11|XAGE1B|pc|chrX:52515415:52515573:-	0	-
#Deleted in new
chrX	52515431	52515573	ENSG00000204382.11|XAGE1B|pc|chrX:52515431:52515573:-	0	-
#Deleted in new
chrX	52516659	52517012	ENSG00000204382.11|XAGE1B|pc|chrX:52516659:52517012:-	0	-
#Deleted in new
chrX	52516979	52517057	ENSG00000204382.11|XAGE1B|pc|chrX:52516979:52517057:-	0	-
#Deleted in new
chrX	52516979	52517106	ENSG00000204382.11|XAGE1B|pc|chrX:52516979:52517106:-	0	-
#Deleted in new
chrX	52516979	52517213	ENSG00000204382.11|XAGE1B|pc|chrX:52516979:52517213:-	0	-
#Deleted in new
chrX	52520708	52520803	ENSG00000204382.11|XAGE1B|pc|chrX:52520708:52520803:-	0	-
#Deleted in new
chrX	52654761	52654900	ENSG00000187754.8|SSX7|pc|chrX:52654761:52654900:-	0	-
#Deleted in new
chrX	52698785	52698931	ENSG00000241476.8|SSX2|pc|chrX:52698785:52698931:-	0	-
#Deleted in new
chrX	52707111	52707161	ENSG00000241476.8|SSX2|pc|chrX:52707111:52707161:-	0	-
#Deleted in new
chrX	52707111	52707189	ENSG00000241476.8|SSX2|pc|chrX:52707111:52707189:-	0	-
#Deleted in new
chrX	52751131	52751274	ENSG00000268447.5|SSX2B|pc|chrX:52751131:52751274:+	0	+
#Deleted in new
chrX	52751240	52751318	ENSG00000268447.5|SSX2B|pc|chrX:52751240:52751318:+	0	+
#Deleted in new
chrX	52751268	52751318	ENSG00000268447.5|SSX2B|pc|chrX:52751268:52751318:+	0	+
#Deleted in new
chrX	52759500	52759646	ENSG00000268447.5|SSX2B|pc|chrX:52759500:52759646:+	0	+
#Duplicated in new
chrX	52760913	52761325	ENSG00000268447.5|SSX2B|pc|chrX:52760913:52761325:+	0	+
#Deleted in new
chrX	52789695	52790305	ENSG00000268447.5|SSX2B|pc|chrX:52789695:52790305:+	0	+
#Deleted in new
chrX	52796143	52796631	ENSG00000204363.4|SPANXN5|pc|chrX:52796143:52796631:-	0	-
#Deleted in new
chrX	52812203	52812261	ENSG00000171405.12|XAGE5|pc|chrX:52812203:52812261:+	0	+
#Deleted in new
chrX	52812203	52812638	ENSG00000171405.12|XAGE5|pc|chrX:52812203:52812638:+	0	+
#Deleted in new
chrX	52812558	52812638	ENSG00000171405.12|XAGE5|pc|chrX:52812558:52812638:+	0	+
#Deleted in new
chrX	52812566	52812638	ENSG00000171405.12|XAGE5|pc|chrX:52812566:52812638:+	0	+
#Deleted in new
chrX	52813139	52813245	ENSG00000171405.12|XAGE5|pc|chrX:52813139:52813245:+	0	+
#Deleted in new
chrX	52814188	52814344	ENSG00000171405.12|XAGE5|pc|chrX:52814188:52814344:+	0	+
#Deleted in new
chrX	52814910	52815217	ENSG00000171405.12|XAGE5|pc|chrX:52814910:52815217:+	0	+
#Deleted in new
chrX	52815091	52815217	ENSG00000171405.12|XAGE5|pc|chrX:52815091:52815217:+	0	+
#Deleted in new
chrX	52818190	52818237	ENSG00000171405.12|XAGE5|pc|chrX:52818190:52818237:+	0	+
#Deleted in new
chrX	52818190	52818298	ENSG00000171405.12|XAGE5|pc|chrX:52818190:52818298:+	0	+
#Deleted in new
chrX	52818190	52818301	ENSG00000171405.12|XAGE5|pc|chrX:52818190:52818301:+	0	+
#Deleted in new
chrX	52862524	52862640	ENSG00000171402.14|XAGE3|pc|chrX:52862524:52862640:-	0	-
#Deleted in new
chrX	52862527	52862640	ENSG00000171402.14|XAGE3|pc|chrX:52862527:52862640:-	0	-
#Deleted in new
chrX	52864774	52864900	ENSG00000171402.14|XAGE3|pc|chrX:52864774:52864900:-	0	-
#Deleted in new
chrX	52866432	52866538	ENSG00000171402.14|XAGE3|pc|chrX:52866432:52866538:-	0	-
#Deleted in new
chrX	52867052	52867141	ENSG00000171402.14|XAGE3|pc|chrX:52867052:52867141:-	0	-
#Deleted in new
chrX	52867249	52867301	ENSG00000171402.14|XAGE3|pc|chrX:52867249:52867301:-	0	-
#Deleted in new
chrX	52868005	52868068	ENSG00000171402.14|XAGE3|pc|chrX:52868005:52868068:-	0	-
#Partially deleted in new
chrX	52897399	52898726	ENSG00000179304.16|FAM156B|pc|chrX:52897399:52898726:+	0	+
#Deleted in new
chrX	52898549	52899541	ENSG00000179304.16|FAM156B|pc|chrX:52898549:52899541:+	0	+
#Deleted in new
chrX	52899058	52899541	ENSG00000179304.16|FAM156B|pc|chrX:52899058:52899541:+	0	+
#Deleted in new
chrX	52899382	52899541	ENSG00000179304.16|FAM156B|pc|chrX:52899382:52899541:+	0	+
#Deleted in new
chrX	52899467	52899541	ENSG00000179304.16|FAM156B|pc|chrX:52899467:52899541:+	0	+
#Deleted in new
chrX	52900567	52900660	ENSG00000179304.16|FAM156B|pc|chrX:52900567:52900660:+	0	+
#Deleted in new
chrX	52900570	52900660	ENSG00000179304.16|FAM156B|pc|chrX:52900570:52900660:+	0	+
#Deleted in new
chrX	52926401	52927765	ENSG00000268350.7|FAM156A|pc|chrX:52926401:52927765:-	0	-
#Deleted in new
chrX	52946594	52946673	ENSG00000268350.7|FAM156A|pc|chrX:52946594:52946673:-	0	-
#Deleted in new
chrX	52955153	52955243	ENSG00000268350.7|FAM156A|pc|chrX:52955153:52955243:-	0	-
#Deleted in new
chrX	52955153	52955246	ENSG00000268350.7|FAM156A|pc|chrX:52955153:52955246:-	0	-
#Deleted in new
chrX	52955154	52955246	ENSG00000268350.7|FAM156A|pc|chrX:52955154:52955246:-	0	-
#Deleted in new
chrX	52956272	52956346	ENSG00000268350.7|FAM156A|pc|chrX:52956272:52956346:-	0	-
#Deleted in new
chrX	52956272	52956755	ENSG00000268350.7|FAM156A|pc|chrX:52956272:52956755:-	0	-
#Partially deleted in new
chrX	52956272	52958484	ENSG00000268350.7|FAM156A|pc|chrX:52956272:52958484:-	0	-
#Deleted in new
chrX	52956278	52956346	ENSG00000268350.7|FAM156A|pc|chrX:52956278:52956346:-	0	-
#Deleted in new
chrX	52957087	52957123	ENSG00000268350.7|FAM156A|pc|chrX:52957087:52957123:-	0	-
#Deleted in new
chrX	52957087	52957238	ENSG00000268350.7|FAM156A|pc|chrX:52957087:52957238:-	0	-
#Deleted in new
chrX	52957087	52957247	ENSG00000268350.7|FAM156A|pc|chrX:52957087:52957247:-	0	-
#Partially deleted in new
chrX	52957087	52958414	ENSG00000268350.7|FAM156A|pc|chrX:52957087:52958414:-	0	-
#Deleted in new
chrX	52957601	52957659	ENSG00000268350.7|FAM156A|pc|chrX:52957601:52957659:-	0	-
#Deleted in new
chrX	52965449	52965981	ENSG00000268350.7|FAM156A|pc|chrX:52965449:52965981:-	0	-
#Deleted in new
chrX	52965572	52965981	ENSG00000268350.7|FAM156A|pc|chrX:52965572:52965981:-	0	-
#Deleted in new
chrX	52995305	52995372	ENSG00000268350.7|FAM156A|pc|chrX:52995305:52995372:-	0	-
#Deleted in new
chrX	52995305	52995464	ENSG00000268350.7|FAM156A|pc|chrX:52995305:52995464:-	0	-
#Deleted in new
chrX	52995305	52995472	ENSG00000268350.7|FAM156A|pc|chrX:52995305:52995472:-	0	-
#Deleted in new
chrX	52995414	52995443	ENSG00000268350.7|FAM156A|pc|chrX:52995414:52995443:-	0	-
#Deleted in new
chrX	52995414	52995453	ENSG00000268350.7|FAM156A|pc|chrX:52995414:52995453:-	0	-
#Deleted in new
chrX	52995414	52995455	ENSG00000268350.7|FAM156A|pc|chrX:52995414:52995455:-	0	-
#Deleted in new
chrX	52995414	52995472	ENSG00000268350.7|FAM156A|pc|chrX:52995414:52995472:-	0	-
#Deleted in new
chrX	53070987	53071110	ENSG00000184194.5|GPR173|pc|chrX:53070987:53071110:+	0	+
#Deleted in new
chrX	53099471	53099608	ENSG00000232593.7|KANTR|pc|chrX:53099471:53099608:+	0	+
#Deleted in new
chrX	53166920	53170914	ENSG00000232593.7|KANTR|pc|chrX:53166920:53170914:+	0	+
#Deleted in new
chrX	53212407	53212739	ENSG00000235262.1|KDM5C-IT1|lncRNA|chrX:53212407:53212739:-	0	-
#Partially deleted in new
chrX	53218563	53218712	ENSG00000126012.11|KDM5C|pc|chrX:53218563:53218712:-	0	-
#Split in new
chrX	53225827	53227865	ENSG00000124313.13|IQSEC2|pc|chrX:53225827:53227865:-	0	-
#Split in new
chrX	53225830	53227865	ENSG00000124313.13|IQSEC2|pc|chrX:53225830:53227865:-	0	-
#Partially deleted in new
chrX	53228822	53231870	ENSG00000124313.13|IQSEC2|pc|chrX:53228822:53231870:-	0	-
#Deleted in new
chrX	53429184	53429278	ENSG00000158423.16|RIBC1|pc|chrX:53429184:53429278:+	0	+
#Deleted in new
chrX	53432721	53432838	ENSG00000233250.1|AC233728.1|lncRNA|chrX:53432721:53432838:-	0	-
#Deleted in new
chrX	54171541	54171899	ENSG00000184083.11|FAM120C|pc|chrX:54171541:54171899:-	0	-
#Deleted in new
chrX	54173788	54174146	ENSG00000184083.11|FAM120C|pc|chrX:54173788:54174146:-	0	-
#Deleted in new
chrX	54228713	54228743	ENSG00000196632.10|WNK3|pc|chrX:54228713:54228743:-	0	-
#Deleted in new
chrX	55075062	55075114	ENSG00000238269.8|PAGE2B|pc|chrX:55075062:55075114:+	0	+
#Deleted in new
chrX	55075070	55075114	ENSG00000238269.8|PAGE2B|pc|chrX:55075070:55075114:+	0	+
#Deleted in new
chrX	55076033	55076125	ENSG00000238269.8|PAGE2B|pc|chrX:55076033:55076125:+	0	+
#Deleted in new
chrX	55076568	55076626	ENSG00000238269.8|PAGE2B|pc|chrX:55076568:55076626:+	0	+
#Deleted in new
chrX	55076568	55076677	ENSG00000238269.8|PAGE2B|pc|chrX:55076568:55076677:+	0	+
#Deleted in new
chrX	55077398	55077524	ENSG00000238269.8|PAGE2B|pc|chrX:55077398:55077524:+	0	+
#Deleted in new
chrX	55078781	55078903	ENSG00000238269.8|PAGE2B|pc|chrX:55078781:55078903:+	0	+
#Deleted in new
chrX	55078781	55078909	ENSG00000238269.8|PAGE2B|pc|chrX:55078781:55078909:+	0	+
#Deleted in new
chrX	55089007	55089103	ENSG00000234068.6|PAGE2|pc|chrX:55089007:55089103:+	0	+
#Deleted in new
chrX	55089051	55089103	ENSG00000234068.6|PAGE2|pc|chrX:55089051:55089103:+	0	+
#Deleted in new
chrX	55089135	55089245	ENSG00000234068.6|PAGE2|pc|chrX:55089135:55089245:+	0	+
#Deleted in new
chrX	55090012	55090104	ENSG00000234068.6|PAGE2|pc|chrX:55090012:55090104:+	0	+
#Deleted in new
chrX	55090501	55090559	ENSG00000234068.6|PAGE2|pc|chrX:55090501:55090559:+	0	+
#Deleted in new
chrX	55090501	55090610	ENSG00000234068.6|PAGE2|pc|chrX:55090501:55090610:+	0	+
#Deleted in new
chrX	55091331	55091457	ENSG00000234068.6|PAGE2|pc|chrX:55091331:55091457:+	0	+
#Deleted in new
chrX	55092714	55092842	ENSG00000234068.6|PAGE2|pc|chrX:55092714:55092842:+	0	+
#Partially deleted in new
chrX	55143101	55143875	ENSG00000182518.13|FAM104B|pc|chrX:55143101:55143875:-	0	-
#Deleted in new
chrX	55220354	55220651	ENSG00000158639.12|PAGE5|pc|chrX:55220354:55220651:+	0	+
#Deleted in new
chrX	55220356	55220452	ENSG00000158639.12|PAGE5|pc|chrX:55220356:55220452:+	0	+
#Deleted in new
chrX	55220419	55220452	ENSG00000158639.12|PAGE5|pc|chrX:55220419:55220452:+	0	+
#Deleted in new
chrX	55221374	55221463	ENSG00000158639.12|PAGE5|pc|chrX:55221374:55221463:+	0	+
#Deleted in new
chrX	55221766	55221824	ENSG00000158639.12|PAGE5|pc|chrX:55221766:55221824:+	0	+
#Deleted in new
chrX	55221766	55221875	ENSG00000158639.12|PAGE5|pc|chrX:55221766:55221875:+	0	+
#Deleted in new
chrX	55222620	55222746	ENSG00000158639.12|PAGE5|pc|chrX:55222620:55222746:+	0	+
#Deleted in new
chrX	55223986	55224106	ENSG00000158639.12|PAGE5|pc|chrX:55223986:55224106:+	0	+
#Deleted in new
chrX	55223986	55224108	ENSG00000158639.12|PAGE5|pc|chrX:55223986:55224108:+	0	+
#Deleted in new
chrX	55258411	55258528	ENSG00000204279.7|PAGE3|pc|chrX:55258411:55258528:-	0	-
#Deleted in new
chrX	55258477	55258528	ENSG00000204279.7|PAGE3|pc|chrX:55258477:55258528:-	0	-
#Deleted in new
chrX	55260533	55260659	ENSG00000204279.7|PAGE3|pc|chrX:55260533:55260659:-	0	-
#Deleted in new
chrX	55263250	55263359	ENSG00000204279.7|PAGE3|pc|chrX:55263250:55263359:-	0	-
#Deleted in new
chrX	55263819	55263911	ENSG00000204279.7|PAGE3|pc|chrX:55263819:55263911:-	0	-
#Deleted in new
chrX	55263819	55263925	ENSG00000204279.7|PAGE3|pc|chrX:55263819:55263925:-	0	-
#Deleted in new
chrX	55264545	55264730	ENSG00000204279.7|PAGE3|pc|chrX:55264545:55264730:-	0	-
#Deleted in new
chrX	55264545	55264846	ENSG00000204279.7|PAGE3|pc|chrX:55264545:55264846:-	0	-
#Deleted in new
chrX	56014844	56015173	ENSG00000227486.1|AL445472.1|lncRNA|chrX:56014844:56015173:+	0	+
#Deleted in new
chrX	5653420	5653703	ENSG00000236120.6|AC110995.1|lncRNA|chrX:5653420:5653703:-	0	-
#Partially deleted in new
chrX	56623868	56624458	ENSG00000230105.1|AL354793.1|lncRNA|chrX:56623868:56624458:+	0	+
#Deleted in new
chrX	5669405	5669606	ENSG00000236120.6|AC110995.1|lncRNA|chrX:5669405:5669606:-	0	-
#Deleted in new
chrX	5671083	5671199	ENSG00000236120.6|AC110995.1|lncRNA|chrX:5671083:5671199:-	0	-
#Deleted in new
chrX	56811019	56811179	ENSG00000204272.12|NBDY|pc|chrX:56811019:56811179:+	0	+
#Deleted in new
chrX	56817319	56817376	ENSG00000204272.12|NBDY|pc|chrX:56817319:56817376:+	0	+
#Deleted in new
chrX	56817319	56817569	ENSG00000204272.12|NBDY|pc|chrX:56817319:56817569:+	0	+
#Deleted in new
chrX	56817319	56817626	ENSG00000204272.12|NBDY|pc|chrX:56817319:56817626:+	0	+
#Deleted in new
chrX	56817319	56818380	ENSG00000204272.12|NBDY|pc|chrX:56817319:56818380:+	0	+
#Deleted in new
chrX	56818297	56820213	ENSG00000204271.12|SPIN3|pc|chrX:56818297:56820213:-	0	-
#Deleted in new
chrX	56858705	56858756	ENSG00000204271.12|SPIN3|pc|chrX:56858705:56858756:-	0	-
#Deleted in new
chrX	56861541	56861665	ENSG00000204271.12|SPIN3|pc|chrX:56861541:56861665:-	0	-
#Deleted in new
chrX	56862421	56862543	ENSG00000204271.12|SPIN3|pc|chrX:56862421:56862543:-	0	-
#Deleted in new
chrX	56973195	56974898	ENSG00000204271.12|SPIN3|pc|chrX:56973195:56974898:-	0	-
#Deleted in new
chrX	56973434	56974898	ENSG00000204271.12|SPIN3|pc|chrX:56973434:56974898:-	0	-
#Deleted in new
chrX	56973509	56973921	ENSG00000224799.1|AL139397.1|lncRNA|chrX:56973509:56973921:+	0	+
#Deleted in new
chrX	56974494	56974898	ENSG00000204271.12|SPIN3|pc|chrX:56974494:56974898:-	0	-
#Deleted in new
chrX	56974564	56974796	ENSG00000224799.1|AL139397.1|lncRNA|chrX:56974564:56974796:+	0	+
#Partially deleted in new
chrX	56975119	56977196	ENSG00000204271.12|SPIN3|pc|chrX:56975119:56977196:-	0	-
#Partially deleted in new
chrX	56975140	56977196	ENSG00000204271.12|SPIN3|pc|chrX:56975140:56977196:-	0	-
#Partially deleted in new
chrX	56975141	56977196	ENSG00000204271.12|SPIN3|pc|chrX:56975141:56977196:-	0	-
#Deleted in new
chrX	56984265	56984466	ENSG00000204271.12|SPIN3|pc|chrX:56984265:56984466:-	0	-
#Deleted in new
chrX	56984265	56984478	ENSG00000204271.12|SPIN3|pc|chrX:56984265:56984478:-	0	-
#Split in new
chrX	56990830	56994949	ENSG00000204271.12|SPIN3|pc|chrX:56990830:56994949:-	0	-
#Split in new
chrX	56990862	56994949	ENSG00000204271.12|SPIN3|pc|chrX:56990862:56994949:-	0	-
#Split in new
chrX	56990863	56994949	ENSG00000204271.12|SPIN3|pc|chrX:56990863:56994949:-	0	-
#Split in new
chrX	56990894	56994949	ENSG00000204271.12|SPIN3|pc|chrX:56990894:56994949:-	0	-
#Split in new
chrX	56990941	56995555	ENSG00000204271.12|SPIN3|pc|chrX:56990941:56995555:-	0	-
#Split in new
chrX	56990945	56994949	ENSG00000204271.12|SPIN3|pc|chrX:56990945:56994949:-	0	-
#Split in new
chrX	56991002	56994419	ENSG00000204271.12|SPIN3|pc|chrX:56991002:56994419:-	0	-
#Deleted in new
chrX	56993786	56993888	ENSG00000204271.12|SPIN3|pc|chrX:56993786:56993888:-	0	-
#Deleted in new
chrX	57126884	57127243	ENSG00000226310.1|AL022157.1|lncRNA|chrX:57126884:57127243:+	0	+
#Deleted in new
chrX	5725929	5725957	ENSG00000236120.6|AC110995.1|lncRNA|chrX:5725929:5725957:-	0	-
#Deleted in new
chrX	5725929	5726305	ENSG00000236120.6|AC110995.1|lncRNA|chrX:5725929:5726305:-	0	-
#Deleted in new
chrX	57286705	57287017	ENSG00000165591.6|FAAH2|pc|chrX:57286705:57287017:+	0	+
#Deleted in new
chrX	57310592	57310729	ENSG00000165591.6|FAAH2|pc|chrX:57310592:57310729:+	0	+
#Deleted in new
chrX	57331597	57331807	ENSG00000165591.6|FAAH2|pc|chrX:57331597:57331807:+	0	+
#Deleted in new
chrX	57341270	57341390	ENSG00000165591.6|FAAH2|pc|chrX:57341270:57341390:+	0	+
#Deleted in new
chrX	57378650	57378786	ENSG00000165591.6|FAAH2|pc|chrX:57378650:57378786:+	0	+
#Deleted in new
chrX	57380911	57381029	ENSG00000165591.6|FAAH2|pc|chrX:57380911:57381029:+	0	+
#Deleted in new
chrX	57431917	57432037	ENSG00000165591.6|FAAH2|pc|chrX:57431917:57432037:+	0	+
#Deleted in new
chrX	57431962	57432012	ENSG00000165591.6|FAAH2|pc|chrX:57431962:57432012:+	0	+
#Deleted in new
chrX	57431997	57432037	ENSG00000165591.6|FAAH2|pc|chrX:57431997:57432037:+	0	+
#Deleted in new
chrX	57446927	57447039	ENSG00000165591.6|FAAH2|pc|chrX:57446927:57447039:+	0	+
#Deleted in new
chrX	57448523	57448718	ENSG00000165591.6|FAAH2|pc|chrX:57448523:57448718:+	0	+
#Deleted in new
chrX	57448681	57448718	ENSG00000165591.6|FAAH2|pc|chrX:57448681:57448718:+	0	+
#Deleted in new
chrX	57452130	57452166	ENSG00000165591.6|FAAH2|pc|chrX:57452130:57452166:+	0	+
#Deleted in new
chrX	57488756	57489193	ENSG00000165591.6|FAAH2|pc|chrX:57488756:57489193:+	0	+
#Deleted in new
chrX	57488756	57489196	ENSG00000165591.6|FAAH2|pc|chrX:57488756:57489196:+	0	+
#Deleted in new
chrX	5840636	5840891	ENSG00000146938.14|NLGN4X|pc|chrX:5840636:5840891:-	0	-
#Deleted in new
chrX	5844433	5844501	ENSG00000146938.14|NLGN4X|pc|chrX:5844433:5844501:-	0	-
#Partially deleted in new
chrX	5890025	5893666	ENSG00000146938.14|NLGN4X|pc|chrX:5890025:5893666:-	0	-
#Partially deleted in new
chrX	5890031	5893666	ENSG00000146938.14|NLGN4X|pc|chrX:5890031:5893666:-	0	-
#Partially deleted in new
chrX	5890277	5893666	ENSG00000146938.14|NLGN4X|pc|chrX:5890277:5893666:-	0	-
#Partially deleted in new
chrX	6151289	6151771	ENSG00000146938.14|NLGN4X|pc|chrX:6151289:6151771:-	0	-
#Deleted in new
chrX	6186771	6187038	ENSG00000146938.14|NLGN4X|pc|chrX:6186771:6187038:-	0	-
#Deleted in new
chrX	6187482	6187789	ENSG00000146938.14|NLGN4X|pc|chrX:6187482:6187789:-	0	-
#Deleted in new
chrX	6226634	6226765	ENSG00000146938.14|NLGN4X|pc|chrX:6226634:6226765:-	0	-
#Deleted in new
chrX	6226879	6227203	ENSG00000146938.14|NLGN4X|pc|chrX:6226879:6227203:-	0	-
#Deleted in new
chrX	6227688	6227847	ENSG00000146938.14|NLGN4X|pc|chrX:6227688:6227847:-	0	-
#Deleted in new
chrX	6228540	6228615	ENSG00000146938.14|NLGN4X|pc|chrX:6228540:6228615:-	0	-
#Deleted in new
chrX	6228540	6228863	ENSG00000146938.14|NLGN4X|pc|chrX:6228540:6228863:-	0	-
#Deleted in new
chrX	624343	624602	ENSG00000185960.13|SHOX|pc|chrX:624343:624602:+	0	+
#Partially deleted in new
chrX	630465	631174	ENSG00000185960.13|SHOX|pc|chrX:630465:631174:+	0	+
#Deleted in new
chrX	63343226	63343289	ENSG00000235437.7|LINC01278|lncRNA|chrX:63343226:63343289:-	0	-
#Deleted in new
chrX	63345488	63345571	ENSG00000235437.7|LINC01278|lncRNA|chrX:63345488:63345571:-	0	-
#Deleted in new
chrX	63399403	63399903	ENSG00000235437.7|LINC01278|lncRNA|chrX:63399403:63399903:-	0	-
#Deleted in new
chrX	63399780	63399903	ENSG00000235437.7|LINC01278|lncRNA|chrX:63399780:63399903:-	0	-
#Deleted in new
chrX	63426558	63428981	ENSG00000235437.7|LINC01278|lncRNA|chrX:63426558:63428981:-	0	-
#Deleted in new
chrX	63426559	63428981	ENSG00000235437.7|LINC01278|lncRNA|chrX:63426559:63428981:-	0	-
#Deleted in new
chrX	63426559	63431612	ENSG00000235437.7|LINC01278|lncRNA|chrX:63426559:63431612:-	0	-
#Deleted in new
chrX	63432363	63432491	ENSG00000235437.7|LINC01278|lncRNA|chrX:63432363:63432491:-	0	-
#Deleted in new
chrX	63509941	63510079	ENSG00000235437.7|LINC01278|lncRNA|chrX:63509941:63510079:-	0	-
#Deleted in new
chrX	63516909	63517082	ENSG00000235437.7|LINC01278|lncRNA|chrX:63516909:63517082:-	0	-
#Deleted in new
chrX	63560831	63560993	ENSG00000235437.7|LINC01278|lncRNA|chrX:63560831:63560993:-	0	-
#Deleted in new
chrX	63560831	63561023	ENSG00000235437.7|LINC01278|lncRNA|chrX:63560831:63561023:-	0	-
#Deleted in new
chrX	63560831	63561049	ENSG00000235437.7|LINC01278|lncRNA|chrX:63560831:63561049:-	0	-
#Deleted in new
chrX	63560831	63561052	ENSG00000235437.7|LINC01278|lncRNA|chrX:63560831:63561052:-	0	-
#Deleted in new
chrX	63560831	63561071	ENSG00000235437.7|LINC01278|lncRNA|chrX:63560831:63561071:-	0	-
#Partially deleted in new
chrX	63639414	63642910	ENSG00000131089.15|ARHGEF9|pc|chrX:63639414:63642910:-	0	-
#Partially deleted in new
chrX	63639445	63642046	ENSG00000131089.15|ARHGEF9|pc|chrX:63639445:63642046:-	0	-
#Deleted in new
chrX	63639555	63639619	ENSG00000131089.15|ARHGEF9|pc|chrX:63639555:63639619:-	0	-
#Deleted in new
chrX	63671254	63671502	ENSG00000231729.1|ARHGEF9-IT1|lncRNA|chrX:63671254:63671502:-	0	-
#Deleted in new
chrX	63701489	63701642	ENSG00000131089.15|ARHGEF9|pc|chrX:63701489:63701642:-	0	-
#Deleted in new
chrX	63709135	63709174	ENSG00000131089.15|ARHGEF9|pc|chrX:63709135:63709174:-	0	-
#Deleted in new
chrX	63712906	63713112	ENSG00000131089.15|ARHGEF9|pc|chrX:63712906:63713112:-	0	-
#Deleted in new
chrX	63715987	63716119	ENSG00000131089.15|ARHGEF9|pc|chrX:63715987:63716119:-	0	-
#Deleted in new
chrX	63719673	63719856	ENSG00000131089.15|ARHGEF9|pc|chrX:63719673:63719856:-	0	-
#Deleted in new
chrX	63726645	63726693	ENSG00000131089.15|ARHGEF9|pc|chrX:63726645:63726693:-	0	-
#Partially deleted in new
chrX	63727190	63727419	ENSG00000131089.15|ARHGEF9|pc|chrX:63727190:63727419:-	0	-
#Deleted in new
chrX	63727520	63727608	ENSG00000131089.15|ARHGEF9|pc|chrX:63727520:63727608:-	0	-
#Partially deleted in new
chrX	63743368	63743446	ENSG00000131089.15|ARHGEF9|pc|chrX:63743368:63743446:-	0	-
#Deleted in new
chrX	63795515	63795576	ENSG00000131089.15|ARHGEF9|pc|chrX:63795515:63795576:-	0	-
#Deleted in new
chrX	63809202	63809274	ENSG00000131089.15|ARHGEF9|pc|chrX:63809202:63809274:-	0	-
#Deleted in new
chrX	64328771	64328900	ENSG00000102043.15|MTMR8|pc|chrX:64328771:64328900:-	0	-
#Partially deleted in new
chrX	64336078	64336128	ENSG00000102043.15|MTMR8|pc|chrX:64336078:64336128:-	0	-
#Partially deleted in new
chrX	64336080	64336128	ENSG00000102043.15|MTMR8|pc|chrX:64336080:64336128:-	0	-
#Deleted in new
chrX	64349941	64350040	ENSG00000102043.15|MTMR8|pc|chrX:64349941:64350040:-	0	-
#Deleted in new
chrX	64349941	64350070	ENSG00000102043.15|MTMR8|pc|chrX:64349941:64350070:-	0	-
#Deleted in new
chrX	64359404	64359527	ENSG00000102043.15|MTMR8|pc|chrX:64359404:64359527:-	0	-
#Partially deleted in new
chrX	644390	645568	ENSG00000185960.13|SHOX|pc|chrX:644390:645568:+	0	+
#Partially deleted in new
chrX	644390	646823	ENSG00000185960.13|SHOX|pc|chrX:644390:646823:+	0	+
#Partially deleted in new
chrX	6533617	6533744	ENSG00000169059.12|VCX3A|pc|chrX:6533617:6533744:-	0	-
#Deleted in new
chrX	6534395	6534643	ENSG00000169059.12|VCX3A|pc|chrX:6534395:6534643:-	0	-
#Deleted in new
chrX	6534957	6535118	ENSG00000169059.12|VCX3A|pc|chrX:6534957:6535118:-	0	-
#Deleted in new
chrX	65366637	65366762	ENSG00000102053.12|ZC3H12B|pc|chrX:65366637:65366762:+	0	+
#Deleted in new
chrX	65368828	65368998	ENSG00000102053.12|ZC3H12B|pc|chrX:65368828:65368998:+	0	+
#Deleted in new
chrX	65398592	65398704	ENSG00000102053.12|ZC3H12B|pc|chrX:65398592:65398704:+	0	+
#Partially deleted in new
chrX	65593252	65593425	ENSG00000147065.16|MSN|pc|chrX:65593252:65593425:+	0	+
#Deleted in new
chrX	65624643	65625865	ENSG00000147065.16|MSN|pc|chrX:65624643:65625865:+	0	+
#Deleted in new
chrX	658784	659411	ENSG00000185960.13|SHOX|pc|chrX:658784:659411:+	0	+
#Deleted in new
chrX	65999750	65999957	ENSG00000237311.1|AL034397.2|lncRNA|chrX:65999750:65999957:+	0	+
#Deleted in new
chrX	66032467	66032749	ENSG00000155659.14|VSIG4|pc|chrX:66032467:66032749:-	0	-
#Deleted in new
chrX	66600038	66600095	ENSG00000131080.14|EDA2R|pc|chrX:66600038:66600095:-	0	-
#Deleted in new
chrX	6667864	6668129	ENSG00000231217.1|AC097347.1|lncRNA|chrX:6667864:6668129:-	0	-
#Deleted in new
chrX	6706342	6706466	ENSG00000231217.1|AC097347.1|lncRNA|chrX:6706342:6706466:-	0	-
#Deleted in new
chrX	6721416	6721544	ENSG00000231217.1|AC097347.1|lncRNA|chrX:6721416:6721544:-	0	-
#Deleted in new
chrX	68013469	68014901	ENSG00000260118.1|AL157700.1|lncRNA|chrX:68013469:68014901:-	0	-
#Deleted in new
chrX	68336428	68336452	ENSG00000079482.12|OPHN1|pc|chrX:68336428:68336452:-	0	-
#Deleted in new
chrX	68510678	68510776	ENSG00000181704.11|YIPF6|pc|chrX:68510678:68510776:+	0	+
#Partially deleted in new
chrX	68513326	68515340	ENSG00000181704.11|YIPF6|pc|chrX:68513326:68515340:+	0	+
#Deleted in new
chrX	68656118	68656551	ENSG00000130052.13|STARD8|pc|chrX:68656118:68656551:+	0	+
#Deleted in new
chrX	69204890	69205027	ENSG00000215162.1|LINC00269|lncRNA|chrX:69204890:69205027:+	0	+
#Deleted in new
chrX	69670209	69670293	ENSG00000158813.17|EDA|pc|chrX:69670209:69670293:+	0	+
#Deleted in new
chrX	69687612	69687646	ENSG00000158813.17|EDA|pc|chrX:69687612:69687646:+	0	+
#Deleted in new
chrX	69860856	69861061	ENSG00000158813.17|EDA|pc|chrX:69860856:69861061:+	0	+
#Deleted in new
chrX	69860856	69861117	ENSG00000158813.17|EDA|pc|chrX:69860856:69861117:+	0	+
#Deleted in new
chrX	69860856	69861193	ENSG00000158813.17|EDA|pc|chrX:69860856:69861193:+	0	+
#Deleted in new
chrX	70149528	70149654	ENSG00000220925.2|IGBP1-AS2|lncRNA|chrX:70149528:70149654:-	0	-
#Deleted in new
chrX	70163841	70164128	ENSG00000203588.3|IGBP1-AS1|lncRNA|chrX:70163841:70164128:-	0	-
#Deleted in new
chrX	70164951	70165206	ENSG00000203588.3|IGBP1-AS1|lncRNA|chrX:70164951:70165206:-	0	-
#Deleted in new
chrX	70282532	70282591	ENSG00000147127.8|RAB41|pc|chrX:70282532:70282591:+	0	+
#Deleted in new
chrX	70282535	70282591	ENSG00000147127.8|RAB41|pc|chrX:70282535:70282591:+	0	+
#Deleted in new
chrX	70284265	70284329	ENSG00000147127.8|RAB41|pc|chrX:70284265:70284329:+	0	+
#Deleted in new
chrX	70284587	70285002	ENSG00000147127.8|RAB41|pc|chrX:70284587:70285002:+	0	+
#Deleted in new
chrX	70430973	70431126	ENSG00000130055.13|GDPD2|pc|chrX:70430973:70431126:+	0	+
#Deleted in new
chrX	7057585	7057823	ENSG00000130021.13|PUDP|pc|chrX:7057585:7057823:-	0	-
#Deleted in new
chrX	7057759	7057823	ENSG00000130021.13|PUDP|pc|chrX:7057759:7057823:-	0	-
#Deleted in new
chrX	7084750	7085471	ENSG00000130021.13|PUDP|pc|chrX:7084750:7085471:-	0	-
#Deleted in new
chrX	70897464	70897546	ENSG00000120498.13|TEX11|pc|chrX:70897464:70897546:-	0	-
#Deleted in new
chrX	70897464	70897586	ENSG00000120498.13|TEX11|pc|chrX:70897464:70897586:-	0	-
#Deleted in new
chrX	70908653	70908711	ENSG00000120498.13|TEX11|pc|chrX:70908653:70908711:-	0	-
#Deleted in new
chrX	70908653	70908731	ENSG00000120498.13|TEX11|pc|chrX:70908653:70908731:-	0	-
#Deleted in new
chrX	71056331	71056369	ENSG00000147164.11|SNX12|pc|chrX:71056331:71056369:-	0	-
#Deleted in new
chrX	7116965	7117034	ENSG00000130021.13|PUDP|pc|chrX:7116965:7117034:-	0	-
#Deleted in new
chrX	71197908	71198175	ENSG00000228427.1|AL590764.1|lncRNA|chrX:71197908:71198175:-	0	-
#Deleted in new
chrX	71284983	71285097	ENSG00000147140.15|NONO|pc|chrX:71284983:71285097:+	0	+
#Partially deleted in new
chrX	71291994	71293041	ENSG00000147140.15|NONO|pc|chrX:71291994:71293041:+	0	+
#Deleted in new
chrX	71294017	71294130	ENSG00000147140.15|NONO|pc|chrX:71294017:71294130:+	0	+
#Deleted in new
chrX	71416617	71416737	ENSG00000147133.15|TAF1|pc|chrX:71416617:71416737:+	0	+
#Deleted in new
chrX	71441699	71441721	ENSG00000147133.15|TAF1|pc|chrX:71441699:71441721:+	0	+
#Deleted in new
chrX	71466267	71466504	ENSG00000147133.15|TAF1|pc|chrX:71466267:71466504:+	0	+
#Deleted in new
chrX	7148052	7148125	ENSG00000130021.13|PUDP|pc|chrX:7148052:7148125:-	0	-
#Deleted in new
chrX	7148052	7148152	ENSG00000130021.13|PUDP|pc|chrX:7148052:7148152:-	0	-
#Deleted in new
chrX	7148052	7148153	ENSG00000130021.13|PUDP|pc|chrX:7148052:7148153:-	0	-
#Deleted in new
chrX	7148052	7148158	ENSG00000130021.13|PUDP|pc|chrX:7148052:7148158:-	0	-
#Deleted in new
chrX	7148052	7148190	ENSG00000130021.13|PUDP|pc|chrX:7148052:7148190:-	0	-
#Deleted in new
chrX	71484883	71484993	ENSG00000147133.15|TAF1|pc|chrX:71484883:71484993:+	0	+
#Deleted in new
chrX	71537013	71537110	ENSG00000147162.13|OGT|pc|chrX:71537013:71537110:+	0	+
#Deleted in new
chrX	71553620	71553645	ENSG00000147162.13|OGT|pc|chrX:71553620:71553645:+	0	+
#Deleted in new
chrX	71578410	71578522	ENSG00000147174.11|GCNA|pc|chrX:71578410:71578522:+	0	+
#Deleted in new
chrX	71580284	71580880	ENSG00000147174.11|GCNA|pc|chrX:71580284:71580880:+	0	+
#Deleted in new
chrX	71580819	71580880	ENSG00000147174.11|GCNA|pc|chrX:71580819:71580880:+	0	+
#Deleted in new
chrX	71594330	71594377	ENSG00000147174.11|GCNA|pc|chrX:71594330:71594377:+	0	+
#Split in new
chrX	71603587	71604676	ENSG00000147174.11|GCNA|pc|chrX:71603587:71604676:+	0	+
#Deleted in new
chrX	71697195	71697301	ENSG00000281852.1|LINC00891|lncRNA|chrX:71697195:71697301:+	0	+
#Deleted in new
chrX	71700820	71701043	ENSG00000281852.1|LINC00891|lncRNA|chrX:71700820:71701043:+	0	+
#Deleted in new
chrX	71702671	71706455	ENSG00000281852.1|LINC00891|lncRNA|chrX:71702671:71706455:+	0	+
#Duplicated in new
chrX	71714375	71714544	ENSG00000215115.6|CXorf49|pc|chrX:71714375:71714544:-	0	-
#Duplicated in new
chrX	71767030	71767199	ENSG00000215113.6|CXorf49B|pc|chrX:71767030:71767199:+	0	+
#Deleted in new
chrX	7219455	7219686	ENSG00000101846.6|STS|pc|chrX:7219455:7219686:+	0	+
#Deleted in new
chrX	72237830	72237948	ENSG00000186871.6|ERCC6L|pc|chrX:72237830:72237948:-	0	-
#Partially deleted in new
chrX	72272041	72272772	ENSG00000198034.10|RPS4X|pc|chrX:72272041:72272772:-	0	-
#Deleted in new
chrX	72298981	72299073	ENSG00000102309.12|PIN4|pc|chrX:72298981:72299073:+	0	+
#Deleted in new
chrX	7257465	7257588	ENSG00000101846.6|STS|pc|chrX:7257465:7257588:+	0	+
#Deleted in new
chrX	72688949	72689002	ENSG00000231944.1|PHKA1-AS1|lncRNA|chrX:72688949:72689002:+	0	+
#Deleted in new
chrX	72697158	72697198	ENSG00000231944.1|PHKA1-AS1|lncRNA|chrX:72697158:72697198:+	0	+
#Deleted in new
chrX	72707848	72707916	ENSG00000231944.1|PHKA1-AS1|lncRNA|chrX:72707848:72707916:+	0	+
#Duplicated in new
chrX	72777607	72779097	ENSG00000269911.1|FAM226B|lncRNA|chrX:72777607:72779097:+	0	+
#Deleted in new
chrX	72998387	72998850	ENSG00000226725.2|PABPC1L2B-AS1|lncRNA|chrX:72998387:72998850:-	0	-
#Deleted in new
chrX	73084172	73084635	ENSG00000231963.1|AL662864.1|lncRNA|chrX:73084172:73084635:+	0	+
#Partially deleted in new
chrX	7349887	7354810	ENSG00000101846.6|STS|pc|chrX:7349887:7354810:+	0	+
#Deleted in new
chrX	73578703	73578785	ENSG00000204116.11|CHIC1|pc|chrX:73578703:73578785:+	0	+
#Split in new
chrX	73792204	73829231	ENSG00000270641.1|TSIX|lncRNA|chrX:73792204:73829231:+	0	+
#Deleted in new
chrX	73837439	73837503	ENSG00000229807.10|XIST|lncRNA|chrX:73837439:73837503:-	0	-
#Deleted in new
chrX	73944183	73944465	ENSG00000225470.7|JPX|lncRNA|chrX:73944183:73944465:+	0	+
#Deleted in new
chrX	73944235	73944465	ENSG00000225470.7|JPX|lncRNA|chrX:73944235:73944465:+	0	+
#Deleted in new
chrX	73944323	73944465	ENSG00000225470.7|JPX|lncRNA|chrX:73944323:73944465:+	0	+
#Deleted in new
chrX	73944326	73944662	ENSG00000225470.7|JPX|lncRNA|chrX:73944326:73944662:+	0	+
#Deleted in new
chrX	73944327	73944465	ENSG00000225470.7|JPX|lncRNA|chrX:73944327:73944465:+	0	+
#Deleted in new
chrX	73944341	73944465	ENSG00000225470.7|JPX|lncRNA|chrX:73944341:73944465:+	0	+
#Deleted in new
chrX	73944342	73944465	ENSG00000225470.7|JPX|lncRNA|chrX:73944342:73944465:+	0	+
#Deleted in new
chrX	73944345	73944414	ENSG00000225470.7|JPX|lncRNA|chrX:73944345:73944414:+	0	+
#Deleted in new
chrX	73944345	73944465	ENSG00000225470.7|JPX|lncRNA|chrX:73944345:73944465:+	0	+
#Deleted in new
chrX	73944350	73944465	ENSG00000225470.7|JPX|lncRNA|chrX:73944350:73944465:+	0	+
#Deleted in new
chrX	73944366	73944465	ENSG00000225470.7|JPX|lncRNA|chrX:73944366:73944465:+	0	+
#Deleted in new
chrX	73944583	73944662	ENSG00000225470.7|JPX|lncRNA|chrX:73944583:73944662:+	0	+
#Deleted in new
chrX	73944583	73944946	ENSG00000225470.7|JPX|lncRNA|chrX:73944583:73944946:+	0	+
#Deleted in new
chrX	73946554	73948267	ENSG00000230590.9|FTX|lncRNA|chrX:73946554:73948267:-	0	-
#Deleted in new
chrX	73946998	73947096	ENSG00000225470.7|JPX|lncRNA|chrX:73946998:73947096:+	0	+
#Deleted in new
chrX	73946998	73947206	ENSG00000225470.7|JPX|lncRNA|chrX:73946998:73947206:+	0	+
#Deleted in new
chrX	73946998	73947374	ENSG00000225470.7|JPX|lncRNA|chrX:73946998:73947374:+	0	+
#Deleted in new
chrX	73947231	73947430	ENSG00000225470.7|JPX|lncRNA|chrX:73947231:73947430:+	0	+
#Deleted in new
chrX	73948972	73949070	ENSG00000228906.1|AL353804.1|lncRNA|chrX:73948972:73949070:+	0	+
#Deleted in new
chrX	73949205	73949558	ENSG00000228906.1|AL353804.1|lncRNA|chrX:73949205:73949558:+	0	+
#Deleted in new
chrX	73958058	73958162	ENSG00000271199.1|AL353804.2|lncRNA|chrX:73958058:73958162:-	0	-
#Deleted in new
chrX	73963954	73964542	ENSG00000230590.9|FTX|lncRNA|chrX:73963954:73964542:-	0	-
#Deleted in new
chrX	73969242	73969485	ENSG00000271199.1|AL353804.2|lncRNA|chrX:73969242:73969485:-	0	-
#Deleted in new
chrX	73981895	73982605	ENSG00000230590.9|FTX|lncRNA|chrX:73981895:73982605:-	0	-
#Deleted in new
chrX	73994839	73994961	ENSG00000225470.7|JPX|lncRNA|chrX:73994839:73994961:+	0	+
#Deleted in new
chrX	73998241	74000740	ENSG00000230590.9|FTX|lncRNA|chrX:73998241:74000740:-	0	-
#Deleted in new
chrX	73998767	73998844	ENSG00000225470.7|JPX|lncRNA|chrX:73998767:73998844:+	0	+
#Deleted in new
chrX	73998953	73999114	ENSG00000225470.7|JPX|lncRNA|chrX:73998953:73999114:+	0	+
#Deleted in new
chrX	73998953	73999368	ENSG00000225470.7|JPX|lncRNA|chrX:73998953:73999368:+	0	+
#Deleted in new
chrX	73998953	73999503	ENSG00000225470.7|JPX|lncRNA|chrX:73998953:73999503:+	0	+
#Deleted in new
chrX	73998953	74000491	ENSG00000225470.7|JPX|lncRNA|chrX:73998953:74000491:+	0	+
#Deleted in new
chrX	73999156	74000740	ENSG00000230590.9|FTX|lncRNA|chrX:73999156:74000740:-	0	-
#Deleted in new
chrX	73999174	74000740	ENSG00000230590.9|FTX|lncRNA|chrX:73999174:74000740:-	0	-
#Deleted in new
chrX	73999354	74000496	ENSG00000225470.7|JPX|lncRNA|chrX:73999354:74000496:+	0	+
#Deleted in new
chrX	74003376	74009949	ENSG00000230590.9|FTX|lncRNA|chrX:74003376:74009949:-	0	-
#Deleted in new
chrX	74003376	74010019	ENSG00000230590.9|FTX|lncRNA|chrX:74003376:74010019:-	0	-
#Deleted in new
chrX	74004269	74004351	ENSG00000225470.7|JPX|lncRNA|chrX:74004269:74004351:+	0	+
#Deleted in new
chrX	74004269	74004551	ENSG00000225470.7|JPX|lncRNA|chrX:74004269:74004551:+	0	+
#Deleted in new
chrX	74004269	74009948	ENSG00000225470.7|JPX|lncRNA|chrX:74004269:74009948:+	0	+
#Deleted in new
chrX	74009388	74009918	ENSG00000230590.9|FTX|lncRNA|chrX:74009388:74009918:-	0	-
#Deleted in new
chrX	74010546	74012945	ENSG00000225470.7|JPX|lncRNA|chrX:74010546:74012945:+	0	+
#Deleted in new
chrX	74010548	74012945	ENSG00000230590.9|FTX|lncRNA|chrX:74010548:74012945:-	0	-
#Deleted in new
chrX	74011093	74011468	ENSG00000230590.9|FTX|lncRNA|chrX:74011093:74011468:-	0	-
#Deleted in new
chrX	74028135	74029551	ENSG00000230590.9|FTX|lncRNA|chrX:74028135:74029551:-	0	-
#Partially deleted in new
chrX	74031615	74032804	ENSG00000225470.7|JPX|lncRNA|chrX:74031615:74032804:+	0	+
#Deleted in new
chrX	74062035	74062148	ENSG00000225470.7|JPX|lncRNA|chrX:74062035:74062148:+	0	+
#Deleted in new
chrX	74122133	74122725	ENSG00000280375.1|AL359740.1|lncRNA|chrX:74122133:74122725:-	0	-
#Split in new
chrX	74196350	74203909	ENSG00000230590.9|FTX|lncRNA|chrX:74196350:74203909:-	0	-
#Split in new
chrX	74200228	74203909	ENSG00000230590.9|FTX|lncRNA|chrX:74200228:74203909:-	0	-
#Deleted in new
chrX	74241932	74242148	ENSG00000230590.9|FTX|lncRNA|chrX:74241932:74242148:-	0	-
#Deleted in new
chrX	74247331	74247424	ENSG00000230590.9|FTX|lncRNA|chrX:74247331:74247424:-	0	-
#Deleted in new
chrX	74247863	74247923	ENSG00000230590.9|FTX|lncRNA|chrX:74247863:74247923:-	0	-
#Partially deleted in new
chrX	74278373	74280494	ENSG00000230590.9|FTX|lncRNA|chrX:74278373:74280494:-	0	-
#Deleted in new
chrX	74476962	74477125	ENSG00000147100.10|SLC16A2|pc|chrX:74476962:74477125:+	0	+
#Deleted in new
chrX	7489658	7491199	ENSG00000279682.1|AC120338.1|lncRNA|chrX:7489658:7491199:+	0	+
#Deleted in new
chrX	75285433	75285524	ENSG00000094841.13|UPRT|pc|chrX:75285433:75285524:+	0	+
#Deleted in new
chrX	75294562	75294620	ENSG00000094841.13|UPRT|pc|chrX:75294562:75294620:+	0	+
#Deleted in new
chrX	75903104	75903175	ENSG00000226854.1|AL451105.2|lncRNA|chrX:75903104:75903175:+	0	+
#Deleted in new
chrX	75903695	75904858	ENSG00000226854.1|AL451105.2|lncRNA|chrX:75903695:75904858:+	0	+
#Deleted in new
chrX	76657797	76658308	ENSG00000280870.2|MIR325HG|lncRNA|chrX:76657797:76658308:-	0	-
#Deleted in new
chrX	76657939	76658308	ENSG00000280870.2|MIR325HG|lncRNA|chrX:76657939:76658308:-	0	-
#Deleted in new
chrX	76657990	76658308	ENSG00000280870.2|MIR325HG|lncRNA|chrX:76657990:76658308:-	0	-
#Deleted in new
chrX	76658118	76658308	ENSG00000280870.2|MIR325HG|lncRNA|chrX:76658118:76658308:-	0	-
#Deleted in new
chrX	76658119	76658308	ENSG00000280870.2|MIR325HG|lncRNA|chrX:76658119:76658308:-	0	-
#Deleted in new
chrX	76658125	76658308	ENSG00000280870.2|MIR325HG|lncRNA|chrX:76658125:76658308:-	0	-
#Deleted in new
chrX	76658501	76658668	ENSG00000280870.2|MIR325HG|lncRNA|chrX:76658501:76658668:-	0	-
#Deleted in new
chrX	76658593	76658865	ENSG00000280870.2|MIR325HG|lncRNA|chrX:76658593:76658865:-	0	-
#Deleted in new
chrX	76658795	76658865	ENSG00000280870.2|MIR325HG|lncRNA|chrX:76658795:76658865:-	0	-
#Deleted in new
chrX	76781182	76781292	ENSG00000280870.2|MIR325HG|lncRNA|chrX:76781182:76781292:-	0	-
#Deleted in new
chrX	76837809	76837892	ENSG00000280870.2|MIR325HG|lncRNA|chrX:76837809:76837892:-	0	-
#Deleted in new
chrX	77561646	77561708	ENSG00000085224.21|ATRX|pc|chrX:77561646:77561708:-	0	-
#Deleted in new
chrX	77575553	77575605	ENSG00000085224.21|ATRX|pc|chrX:77575553:77575605:-	0	-
#Deleted in new
chrX	77575692	77575753	ENSG00000085224.21|ATRX|pc|chrX:77575692:77575753:-	0	-
#Deleted in new
chrX	77595711	77595785	ENSG00000085224.21|ATRX|pc|chrX:77595711:77595785:-	0	-
#Deleted in new
chrX	77868107	77868649	ENSG00000102158.19|MAGT1|pc|chrX:77868107:77868649:-	0	-
#Deleted in new
chrX	77901743	77901867	ENSG00000131174.4|COX7B|pc|chrX:77901743:77901867:+	0	+
#Deleted in new
chrX	78065187	78065272	ENSG00000102144.13|PGK1|pc|chrX:78065187:78065272:+	0	+
#Deleted in new
chrX	78065215	78065272	ENSG00000102144.13|PGK1|pc|chrX:78065215:78065272:+	0	+
#Deleted in new
chrX	78096652	78096768	ENSG00000102144.13|PGK1|pc|chrX:78096652:78096768:+	0	+
#Partially deleted in new
chrX	78125789	78129296	ENSG00000102144.13|PGK1|pc|chrX:78125789:78129296:+	0	+
#Partially deleted in new
chrX	78318896	78321683	ENSG00000173198.5|CYSLTR1|pc|chrX:78318896:78321683:-	0	-
#Deleted in new
chrX	7842261	7842334	ENSG00000182583.12|VCX|pc|chrX:7842261:7842334:+	0	+
#Deleted in new
chrX	7842261	7842371	ENSG00000182583.12|VCX|pc|chrX:7842261:7842371:+	0	+
#Deleted in new
chrX	7842690	7842741	ENSG00000182583.12|VCX|pc|chrX:7842690:7842741:+	0	+
#Deleted in new
chrX	7843057	7843305	ENSG00000182583.12|VCX|pc|chrX:7843057:7843305:+	0	+
#Deleted in new
chrX	7843087	7843305	ENSG00000182583.12|VCX|pc|chrX:7843087:7843305:+	0	+
#Partially deleted in new
chrX	7843497	7843752	ENSG00000182583.12|VCX|pc|chrX:7843497:7843752:+	0	+
#Partially deleted in new
chrX	7843497	7843769	ENSG00000182583.12|VCX|pc|chrX:7843497:7843769:+	0	+
#Deleted in new
chrX	7844009	7844013	ENSG00000182583.12|VCX|pc|chrX:7844009:7844013:+	0	+
#Deleted in new
chrX	7844016	7844143	ENSG00000182583.12|VCX|pc|chrX:7844016:7844143:+	0	+
#Deleted in new
chrX	78947814	78947863	ENSG00000078589.12|P2RY10|pc|chrX:78947814:78947863:+	0	+
#Deleted in new
chrX	78952192	78952335	ENSG00000078589.12|P2RY10|pc|chrX:78952192:78952335:+	0	+
#Deleted in new
chrX	7898246	7900817	ENSG00000006757.11|PNPLA4|pc|chrX:7898246:7900817:-	0	-
#Deleted in new
chrX	7898762	7900817	ENSG00000006757.11|PNPLA4|pc|chrX:7898762:7900817:-	0	-
#Deleted in new
chrX	7921712	7921848	ENSG00000006757.11|PNPLA4|pc|chrX:7921712:7921848:-	0	-
#Deleted in new
chrX	7922003	7922098	ENSG00000006757.11|PNPLA4|pc|chrX:7922003:7922098:-	0	-
#Deleted in new
chrX	7925939	7926132	ENSG00000006757.11|PNPLA4|pc|chrX:7925939:7926132:-	0	-
#Deleted in new
chrX	7927285	7927443	ENSG00000006757.11|PNPLA4|pc|chrX:7927285:7927443:-	0	-
#Deleted in new
chrX	7927670	7927739	ENSG00000006757.11|PNPLA4|pc|chrX:7927670:7927739:-	0	-
#Deleted in new
chrX	7927685	7927739	ENSG00000006757.11|PNPLA4|pc|chrX:7927685:7927739:-	0	-
#Deleted in new
chrX	8007377	8007449	ENSG00000230394.1|AC078960.1|lncRNA|chrX:8007377:8007449:+	0	+
#Deleted in new
chrX	8018055	8018160	ENSG00000230394.1|AC078960.1|lncRNA|chrX:8018055:8018160:+	0	+
#Deleted in new
chrX	81195117	81195297	ENSG00000198157.10|HMGN5|pc|chrX:81195117:81195297:-	0	-
#Deleted in new
chrX	81197705	81197778	ENSG00000198157.10|HMGN5|pc|chrX:81197705:81197778:-	0	-
#Deleted in new
chrX	8169943	8170349	ENSG00000177504.10|VCX2|pc|chrX:8169943:8170349:-	0	-
#Deleted in new
chrX	8170541	8170789	ENSG00000177504.10|VCX2|pc|chrX:8170541:8170789:-	0	-
#Deleted in new
chrX	8171106	8171267	ENSG00000177504.10|VCX2|pc|chrX:8171106:8171267:-	0	-
#Deleted in new
chrX	84488023	84488132	ENSG00000165259.13|HDX|pc|chrX:84488023:84488132:-	0	-
#Deleted in new
chrX	8464829	8464990	ENSG00000205642.9|VCX3B|pc|chrX:8464829:8464990:+	0	+
#Deleted in new
chrX	8465304	8465552	ENSG00000205642.9|VCX3B|pc|chrX:8465304:8465552:+	0	+
#Deleted in new
chrX	8465425	8465552	ENSG00000205642.9|VCX3B|pc|chrX:8465425:8465552:+	0	+
#Deleted in new
chrX	8465744	8465933	ENSG00000205642.9|VCX3B|pc|chrX:8465744:8465933:+	0	+
#Partially deleted in new
chrX	8465744	8466016	ENSG00000205642.9|VCX3B|pc|chrX:8465744:8466016:+	0	+
#Deleted in new
chrX	8466376	8466380	ENSG00000205642.9|VCX3B|pc|chrX:8466376:8466380:+	0	+
#Deleted in new
chrX	8466383	8466510	ENSG00000205642.9|VCX3B|pc|chrX:8466383:8466510:+	0	+
#Deleted in new
chrX	85046300	85046309	ENSG00000155008.13|APOOL|pc|chrX:85046300:85046309:+	0	+
#Deleted in new
chrX	85046338	85046344	ENSG00000155008.13|APOOL|pc|chrX:85046338:85046344:+	0	+
#Partially deleted in new
chrX	8528873	8533053	ENSG00000011201.11|ANOS1|pc|chrX:8528873:8533053:-	0	-
#Deleted in new
chrX	8534318	8534460	ENSG00000011201.11|ANOS1|pc|chrX:8534318:8534460:-	0	-
#Deleted in new
chrX	8535180	8535811	ENSG00000011201.11|ANOS1|pc|chrX:8535180:8535811:-	0	-
#Deleted in new
chrX	8535590	8535811	ENSG00000011201.11|ANOS1|pc|chrX:8535590:8535811:-	0	-
#Deleted in new
chrX	8536770	8536936	ENSG00000011201.11|ANOS1|pc|chrX:8536770:8536936:-	0	-
#Deleted in new
chrX	8536770	8536942	ENSG00000011201.11|ANOS1|pc|chrX:8536770:8536942:-	0	-
#Deleted in new
chrX	8539663	8539758	ENSG00000011201.11|ANOS1|pc|chrX:8539663:8539758:-	0	-
#Deleted in new
chrX	8553951	8554098	ENSG00000011201.11|ANOS1|pc|chrX:8553951:8554098:-	0	-
#Deleted in new
chrX	8565805	8566212	ENSG00000011201.11|ANOS1|pc|chrX:8565805:8566212:-	0	-
#Deleted in new
chrX	8568231	8568376	ENSG00000011201.11|ANOS1|pc|chrX:8568231:8568376:-	0	-
#Deleted in new
chrX	8570498	8570650	ENSG00000011201.11|ANOS1|pc|chrX:8570498:8570650:-	0	-
#Deleted in new
chrX	8570498	8570704	ENSG00000011201.11|ANOS1|pc|chrX:8570498:8570704:-	0	-
#Deleted in new
chrX	8585266	8585396	ENSG00000011201.11|ANOS1|pc|chrX:8585266:8585396:-	0	-
#Deleted in new
chrX	8587793	8587978	ENSG00000011201.11|ANOS1|pc|chrX:8587793:8587978:-	0	-
#Partially deleted in new
chrX	85969086	85971586	ENSG00000188419.13|CHM|pc|chrX:85969086:85971586:-	0	-
#Deleted in new
chrX	8597033	8597256	ENSG00000011201.11|ANOS1|pc|chrX:8597033:8597256:-	0	-
#Deleted in new
chrX	86184232	86184350	ENSG00000126733.20|DACH2|pc|chrX:86184232:86184350:+	0	+
#Deleted in new
chrX	8623607	8623670	ENSG00000011201.11|ANOS1|pc|chrX:8623607:8623670:-	0	-
#Deleted in new
chrX	8699697	8699745	ENSG00000011201.11|ANOS1|pc|chrX:8699697:8699745:-	0	-
#Deleted in new
chrX	8731829	8732186	ENSG00000011201.11|ANOS1|pc|chrX:8731829:8732186:-	0	-
#Deleted in new
chrX	87669328	87669596	ENSG00000102271.13|KLHL4|pc|chrX:87669328:87669596:+	0	+
#Deleted in new
chrX	87707578	87707778	ENSG00000282914.1|Z83818.2|lncRNA|chrX:87707578:87707778:-	0	-
#Deleted in new
chrX	87708276	87708380	ENSG00000282914.1|Z83818.2|lncRNA|chrX:87708276:87708380:-	0	-
#Deleted in new
chrX	87750754	87750883	ENSG00000282914.1|Z83818.2|lncRNA|chrX:87750754:87750883:-	0	-
#Partially deleted in new
chrX	8790794	8791172	ENSG00000183304.10|FAM9A|pc|chrX:8790794:8791172:-	0	-
#Partially deleted in new
chrX	8795077	8795420	ENSG00000183304.10|FAM9A|pc|chrX:8795077:8795420:-	0	-
#Deleted in new
chrX	8798149	8798181	ENSG00000183304.10|FAM9A|pc|chrX:8798149:8798181:-	0	-
#Deleted in new
chrX	8798358	8798479	ENSG00000183304.10|FAM9A|pc|chrX:8798358:8798479:-	0	-
#Deleted in new
chrX	8798965	8799094	ENSG00000183304.10|FAM9A|pc|chrX:8798965:8799094:-	0	-
#Deleted in new
chrX	8800080	8800209	ENSG00000183304.10|FAM9A|pc|chrX:8800080:8800209:-	0	-
#Deleted in new
chrX	8801239	8801337	ENSG00000183304.10|FAM9A|pc|chrX:8801239:8801337:-	0	-
#Deleted in new
chrX	8801310	8801383	ENSG00000183304.10|FAM9A|pc|chrX:8801310:8801383:-	0	-
#Deleted in new
chrX	8863860	8864092	ENSG00000229012.1|AC003685.1|lncRNA|chrX:8863860:8864092:-	0	-
#Deleted in new
chrX	8866671	8866814	ENSG00000229012.1|AC003685.1|lncRNA|chrX:8866671:8866814:-	0	-
#Deleted in new
chrX	8867510	8867601	ENSG00000229012.1|AC003685.1|lncRNA|chrX:8867510:8867601:-	0	-
#Deleted in new
chrX	88747224	88747369	ENSG00000147183.9|CPXCR1|pc|chrX:88747224:88747369:+	0	+
#Deleted in new
chrX	88747234	88747331	ENSG00000147183.9|CPXCR1|pc|chrX:88747234:88747331:+	0	+
#Deleted in new
chrX	88749317	88749423	ENSG00000147183.9|CPXCR1|pc|chrX:88749317:88749423:+	0	+
#Deleted in new
chrX	89423737	89423795	ENSG00000225012.5|AL121872.1|lncRNA|chrX:89423737:89423795:+	0	+
#Partially deleted in new
chrX	9024231	9025377	ENSG00000177138.15|FAM9B|pc|chrX:9024231:9025377:-	0	-
#Partially deleted in new
chrX	9024994	9025377	ENSG00000177138.15|FAM9B|pc|chrX:9024994:9025377:-	0	-
#Partially deleted in new
chrX	9030260	9032161	ENSG00000177138.15|FAM9B|pc|chrX:9030260:9032161:-	0	-
#Deleted in new
chrX	9032129	9032161	ENSG00000177138.15|FAM9B|pc|chrX:9032129:9032161:-	0	-
#Deleted in new
chrX	9032340	9032461	ENSG00000177138.15|FAM9B|pc|chrX:9032340:9032461:-	0	-
#Deleted in new
chrX	9032340	9033075	ENSG00000177138.15|FAM9B|pc|chrX:9032340:9033075:-	0	-
#Deleted in new
chrX	9032958	9033075	ENSG00000177138.15|FAM9B|pc|chrX:9032958:9033075:-	0	-
#Deleted in new
chrX	9032958	9033310	ENSG00000177138.15|FAM9B|pc|chrX:9032958:9033310:-	0	-
#Deleted in new
chrX	9033851	9034127	ENSG00000177138.15|FAM9B|pc|chrX:9033851:9034127:-	0	-
#Deleted in new
chrX	9082578	9082735	ENSG00000177138.15|FAM9B|pc|chrX:9082578:9082735:-	0	-
#Deleted in new
chrX	91307780	91307932	ENSG00000206062.4|AL121823.1|lncRNA|chrX:91307780:91307932:+	0	+
#Deleted in new
chrX	91308289	91308878	ENSG00000206062.4|AL121823.1|lncRNA|chrX:91308289:91308878:+	0	+
#Deleted in new
chrX	91418324	91418393	ENSG00000234161.1|PABPC5-AS1|lncRNA|chrX:91418324:91418393:-	0	-
#Deleted in new
chrX	91418783	91418871	ENSG00000234161.1|PABPC5-AS1|lncRNA|chrX:91418783:91418871:-	0	-
#Deleted in new
chrX	9160613	9161914	ENSG00000177138.15|FAM9B|pc|chrX:9160613:9161914:-	0	-
#Deleted in new
chrX	9162197	9162313	ENSG00000177138.15|FAM9B|pc|chrX:9162197:9162313:-	0	-
#Deleted in new
chrX	9162796	9162904	ENSG00000177138.15|FAM9B|pc|chrX:9162796:9162904:-	0	-
#Deleted in new
chrX	9163076	9163201	ENSG00000177138.15|FAM9B|pc|chrX:9163076:9163201:-	0	-
#Deleted in new
chrX	9164292	9164606	ENSG00000177138.15|FAM9B|pc|chrX:9164292:9164606:-	0	-
#Deleted in new
chrX	9164532	9164639	ENSG00000177138.15|FAM9B|pc|chrX:9164532:9164639:-	0	-
#Deleted in new
chrX	92287966	92288002	ENSG00000102290.22|PCDH11X|pc|chrX:92287966:92288002:+	0	+
#Partially deleted in new
chrX	9273555	9275206	ENSG00000228543.1|AC003684.1|lncRNA|chrX:9273555:9275206:+	0	+
#Deleted in new
chrX	9501779	9501849	ENSG00000101849.15|TBL1X|pc|chrX:9501779:9501849:+	0	+
#Deleted in new
chrX	9534899	9535034	ENSG00000101849.15|TBL1X|pc|chrX:9534899:9535034:+	0	+
#Deleted in new
chrX	9534942	9534960	ENSG00000101849.15|TBL1X|pc|chrX:9534942:9534960:+	0	+
#Deleted in new
chrX	9644676	9645395	ENSG00000101849.15|TBL1X|pc|chrX:9644676:9645395:+	0	+
#Deleted in new
chrX	97442056	97442119	ENSG00000236256.9|DIAPH2-AS1|lncRNA|chrX:97442056:97442119:-	0	-
#Deleted in new
chrX	97442678	97442811	ENSG00000236256.9|DIAPH2-AS1|lncRNA|chrX:97442678:97442811:-	0	-
#Deleted in new
chrX	97453978	97454018	ENSG00000236256.9|DIAPH2-AS1|lncRNA|chrX:97453978:97454018:-	0	-
#Deleted in new
chrX	9747832	9748073	ENSG00000101850.12|GPR143|pc|chrX:9747832:9748073:-	0	-
#Partially deleted in new
chrX	97528364	97529066	ENSG00000236256.9|DIAPH2-AS1|lncRNA|chrX:97528364:97529066:-	0	-
#Deleted in new
chrX	97564379	97564505	ENSG00000236256.9|DIAPH2-AS1|lncRNA|chrX:97564379:97564505:-	0	-
#Deleted in new
chrX	97564379	97564533	ENSG00000236256.9|DIAPH2-AS1|lncRNA|chrX:97564379:97564533:-	0	-
#Deleted in new
chrX	97602810	97603011	ENSG00000236256.9|DIAPH2-AS1|lncRNA|chrX:97602810:97603011:-	0	-
#Deleted in new
chrX	97602829	97603011	ENSG00000236256.9|DIAPH2-AS1|lncRNA|chrX:97602829:97603011:-	0	-
#Deleted in new
chrX	98573858	98573932	ENSG00000281566.2|AL157778.1|lncRNA|chrX:98573858:98573932:+	0	+
#Deleted in new
chrX	98573874	98573932	ENSG00000281566.2|AL157778.1|lncRNA|chrX:98573874:98573932:+	0	+
#Deleted in new
chrX	98578985	98579074	ENSG00000281566.2|AL157778.1|lncRNA|chrX:98578985:98579074:+	0	+
#Deleted in new
chrX	98731530	98731577	ENSG00000281566.2|AL157778.1|lncRNA|chrX:98731530:98731577:+	0	+
#Deleted in new
chrX	98785026	98785124	ENSG00000281566.2|AL157778.1|lncRNA|chrX:98785026:98785124:+	0	+
#Deleted in new
chrX	98864610	98864904	ENSG00000281566.2|AL157778.1|lncRNA|chrX:98864610:98864904:+	0	+
#Deleted in new
chrX	98864610	98864984	ENSG00000281566.2|AL157778.1|lncRNA|chrX:98864610:98864984:+	0	+
#Deleted in new
chrX	990220	990427	ENSG00000237531.6|AL672277.1|lncRNA|chrX:990220:990427:+	0	+
#Deleted in new
chrX	993984	994365	ENSG00000237531.6|AL672277.1|lncRNA|chrX:993984:994365:+	0	+
#Deleted in new
chrY	1187548	1187574	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1187548:1187574:-	0	-
#Deleted in new
chrY	1190489	1191160	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1190489:1191160:-	0	-
#Deleted in new
chrY	1190491	1191160	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1190491:1191160:-	0	-
#Deleted in new
chrY	1190496	1191160	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1190496:1191160:-	0	-
#Deleted in new
chrY	1190896	1191160	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1190896:1191160:-	0	-
#Deleted in new
chrY	1196779	1196900	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1196779:1196900:-	0	-
#Deleted in new
chrY	1198561	1198724	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1198561:1198724:-	0	-
#Deleted in new
chrY	1198800	1199145	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1198800:1199145:-	0	-
#Deleted in new
chrY	1202401	1202535	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1202401:1202535:-	0	-
#Deleted in new
chrY	1206432	1206599	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1206432:1206599:-	0	-
#Deleted in new
chrY	1208805	1208905	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1208805:1208905:-	0	-
#Deleted in new
chrY	1208805	1208908	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1208805:1208908:-	0	-
#Deleted in new
chrY	1212555	1212634	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1212555:1212634:-	0	-
#Deleted in new
chrY	1212555	1212637	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1212555:1212637:-	0	-
#Deleted in new
chrY	1212555	1212723	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1212555:1212723:-	0	-
#Deleted in new
chrY	1212555	1212750	ENSG00000205755.11_PAR_Y|CRLF2|pc|chrY:1212555:1212750:-	0	-
#Deleted in new
chrY	12662333	12662706	ENSG00000233864.7|TTTY15|lncRNA|chrY:12662333:12662706:+	0	+
#Deleted in new
chrY	12662536	12662706	ENSG00000233864.7|TTTY15|lncRNA|chrY:12662536:12662706:+	0	+
#Deleted in new
chrY	12664639	12664686	ENSG00000233864.7|TTTY15|lncRNA|chrY:12664639:12664686:+	0	+
#Deleted in new
chrY	12686512	12686606	ENSG00000233864.7|TTTY15|lncRNA|chrY:12686512:12686606:+	0	+
#Deleted in new
chrY	12687463	12692233	ENSG00000233864.7|TTTY15|lncRNA|chrY:12687463:12692233:+	0	+
#Deleted in new
chrY	12687684	12688255	ENSG00000233864.7|TTTY15|lncRNA|chrY:12687684:12688255:+	0	+
#Deleted in new
chrY	1268799	1268879	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1268799:1268879:+	0	+
#Deleted in new
chrY	1268807	1268879	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1268807:1268879:+	0	+
#Deleted in new
chrY	1268813	1268879	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1268813:1268879:+	0	+
#Deleted in new
chrY	1268817	1268879	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1268817:1268879:+	0	+
#Deleted in new
chrY	1268829	1268879	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1268829:1268879:+	0	+
#Deleted in new
chrY	1268831	1268879	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1268831:1268879:+	0	+
#Deleted in new
chrY	1268834	1268879	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1268834:1268879:+	0	+
#Deleted in new
chrY	1268844	1268879	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1268844:1268879:+	0	+
#Deleted in new
chrY	12690325	12690441	ENSG00000233864.7|TTTY15|lncRNA|chrY:12690325:12690441:+	0	+
#Deleted in new
chrY	12701230	12702055	ENSG00000114374.12|USP9Y|pc|chrY:12701230:12702055:+	0	+
#Deleted in new
chrY	12702039	12702055	ENSG00000114374.12|USP9Y|pc|chrY:12702039:12702055:+	0	+
#Deleted in new
chrY	12708633	12708693	ENSG00000114374.12|USP9Y|pc|chrY:12708633:12708693:+	0	+
#Deleted in new
chrY	1274754	1274818	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1274754:1274818:+	0	+
#Deleted in new
chrY	1274754	1274842	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1274754:1274842:+	0	+
#Deleted in new
chrY	1281870	1282220	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1281870:1282220:+	0	+
#Deleted in new
chrY	1282408	1282560	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1282408:1282560:+	0	+
#Deleted in new
chrY	1282677	1282779	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1282677:1282779:+	0	+
#Deleted in new
chrY	1282685	1282779	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1282685:1282779:+	0	+
#Deleted in new
chrY	1285651	1285920	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1285651:1285920:+	0	+
#Deleted in new
chrY	1285777	1285920	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1285777:1285920:+	0	+
#Duplicated in new
chrY	12859278	12860839	ENSG00000114374.12|USP9Y|pc|chrY:12859278:12860839:+	0	+
#Deleted in new
chrY	1287173	1287198	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1287173:1287198:+	0	+
#Deleted in new
chrY	1288518	1288640	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1288518:1288640:+	0	+
#Deleted in new
chrY	1288518	1288642	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1288518:1288642:+	0	+
#Deleted in new
chrY	1288597	1288642	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1288597:1288642:+	0	+
#Deleted in new
chrY	1288758	1288888	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1288758:1288888:+	0	+
#Deleted in new
chrY	1288758	1289105	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1288758:1289105:+	0	+
#Deleted in new
chrY	1290336	1290509	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1290336:1290509:+	0	+
#Deleted in new
chrY	1290452	1290509	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1290452:1290509:+	0	+
#Duplicated in new
chrY	12904830	12904981	ENSG00000067048.16|DDX3Y|pc|chrY:12904830:12904981:+	0	+
#Duplicated in new
chrY	12904848	12904981	ENSG00000067048.16|DDX3Y|pc|chrY:12904848:12904981:+	0	+
#Partially deleted in new
chrY	12905737	12905815	ENSG00000067048.16|DDX3Y|pc|chrY:12905737:12905815:+	0	+
#Deleted in new
chrY	1294224	1294461	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1294224:1294461:+	0	+
#Deleted in new
chrY	1294327	1294395	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1294327:1294395:+	0	+
#Deleted in new
chrY	1294327	1294461	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1294327:1294461:+	0	+
#Deleted in new
chrY	1295426	1295456	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1295426:1295456:+	0	+
#Deleted in new
chrY	1295426	1295578	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1295426:1295578:+	0	+
#Deleted in new
chrY	1300490	1300543	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1300490:1300543:+	0	+
#Deleted in new
chrY	1300490	1300626	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1300490:1300626:+	0	+
#Deleted in new
chrY	1302896	1302916	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1302896:1302916:+	0	+
#Deleted in new
chrY	1303260	1303362	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1303260:1303362:+	0	+
#Deleted in new
chrY	1303922	1304019	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1303922:1304019:+	0	+
#Deleted in new
chrY	1305445	1305527	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1305445:1305527:+	0	+
#Deleted in new
chrY	1305627	1305941	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1305627:1305941:+	0	+
#Deleted in new
chrY	1309401	1309638	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1309401:1309638:+	0	+
#Deleted in new
chrY	1309401	1309922	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1309401:1309922:+	0	+
#Deleted in new
chrY	1309401	1309924	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1309401:1309924:+	0	+
#Deleted in new
chrY	1309401	1309934	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1309401:1309934:+	0	+
#Deleted in new
chrY	1309401	1309935	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1309401:1309935:+	0	+
#Deleted in new
chrY	1309401	1310381	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1309401:1310381:+	0	+
#Deleted in new
chrY	1309823	1309922	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1309823:1309922:+	0	+
#Deleted in new
chrY	1309839	1309922	ENSG00000198223.16_PAR_Y|CSF2RA|pc|chrY:1309839:1309922:+	0	+
#Deleted in new
chrY	13323033	13323368	ENSG00000183878.15|UTY|pc|chrY:13323033:13323368:-	0	-
#Deleted in new
chrY	13354785	13354833	ENSG00000183878.15|UTY|pc|chrY:13354785:13354833:-	0	-
#Deleted in new
chrY	1336615	1336926	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1336615:1336926:+	0	+
#Deleted in new
chrY	1336795	1336926	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1336795:1336926:+	0	+
#Partially deleted in new
chrY	13396301	13396972	ENSG00000183878.15|UTY|pc|chrY:13396301:13396972:-	0	-
#Deleted in new
chrY	1341727	1341829	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1341727:1341829:+	0	+
#Deleted in new
chrY	1345315	1345434	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1345315:1345434:+	0	+
#Deleted in new
chrY	1348430	1348545	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1348430:1348545:+	0	+
#Deleted in new
chrY	1352321	1352506	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1352321:1352506:+	0	+
#Deleted in new
chrY	1356220	1356331	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1356220:1356331:+	0	+
#Deleted in new
chrY	1356220	1356336	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1356220:1356336:+	0	+
#Deleted in new
chrY	1358860	1358887	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1358860:1358887:+	0	+
#Deleted in new
chrY	1365137	1365252	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1365137:1365252:+	0	+
#Deleted in new
chrY	1378658	1378764	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1378658:1378764:+	0	+
#Deleted in new
chrY	1381022	1381104	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1381022:1381104:+	0	+
#Deleted in new
chrY	1382390	1382685	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1382390:1382685:+	0	+
#Deleted in new
chrY	1382390	1382689	ENSG00000185291.11_PAR_Y|IL3RA|pc|chrY:1382390:1382689:+	0	+
#Deleted in new
chrY	1390191	1390290	ENSG00000169100.13_PAR_Y|SLC25A6|pc|chrY:1390191:1390290:-	0	-
#Deleted in new
chrY	1390191	1390293	ENSG00000169100.13_PAR_Y|SLC25A6|pc|chrY:1390191:1390293:-	0	-
#Deleted in new
chrY	1396426	1396648	ENSG00000236871.7_PAR_Y|LINC00106|lncRNA|chrY:1396426:1396648:+	0	+
#Deleted in new
chrY	1397024	1397224	ENSG00000236871.7_PAR_Y|LINC00106|lncRNA|chrY:1397024:1397224:+	0	+
#Deleted in new
chrY	13985771	13986146	ENSG00000129864.6|VCY|pc|chrY:13985771:13986146:-	0	-
#Deleted in new
chrY	13986338	13986513	ENSG00000129864.6|VCY|pc|chrY:13986338:13986513:-	0	-
#Deleted in new
chrY	1398824	1398958	ENSG00000236871.7_PAR_Y|LINC00106|lncRNA|chrY:1398824:1398958:+	0	+
#Deleted in new
chrY	1399366	1399402	ENSG00000236871.7_PAR_Y|LINC00106|lncRNA|chrY:1399366:1399402:+	0	+
#Deleted in new
chrY	1401768	1402225	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1401768:1402225:+	0	+
#Deleted in new
chrY	1401810	1402225	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1401810:1402225:+	0	+
#Deleted in new
chrY	1402042	1402225	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1402042:1402225:+	0	+
#Deleted in new
chrY	1403138	1403489	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1403138:1403489:-	0	-
#Deleted in new
chrY	1403140	1403489	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1403140:1403489:-	0	-
#Deleted in new
chrY	1403376	1403493	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1403376:1403493:+	0	+
#Deleted in new
chrY	1403458	1403585	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1403458:1403585:+	0	+
#Deleted in new
chrY	1403460	1403585	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1403460:1403585:+	0	+
#Deleted in new
chrY	1403509	1403585	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1403509:1403585:+	0	+
#Deleted in new
chrY	14056216	14056391	ENSG00000129862.6|VCY1B|pc|chrY:14056216:14056391:+	0	+
#Deleted in new
chrY	14056583	14056958	ENSG00000129862.6|VCY1B|pc|chrY:14056583:14056958:+	0	+
#Deleted in new
chrY	1412731	1412854	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1412731:1412854:-	0	-
#Deleted in new
chrY	1412742	1412888	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1412742:1412888:+	0	+
#Deleted in new
chrY	1412742	1413131	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1412742:1413131:+	0	+
#Deleted in new
chrY	1412790	1412888	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1412790:1412888:+	0	+
#Deleted in new
chrY	1413748	1414028	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1413748:1414028:+	0	+
#Deleted in new
chrY	1413761	1413915	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1413761:1413915:+	0	+
#Deleted in new
chrY	1413763	1414024	ENSG00000236017.8_PAR_Y|ASMTL-AS1|lncRNA|chrY:1413763:1414024:+	0	+
#Deleted in new
chrY	1417972	1418116	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1417972:1418116:-	0	-
#Deleted in new
chrY	1418981	1419114	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1418981:1419114:-	0	-
#Deleted in new
chrY	1421657	1421842	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1421657:1421842:-	0	-
#Deleted in new
chrY	1425524	1425687	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1425524:1425687:-	0	-
#Deleted in new
chrY	14276211	14276611	ENSG00000223517.1|AC010723.1|lncRNA|chrY:14276211:14276611:-	0	-
#Deleted in new
chrY	14277349	14277489	ENSG00000223517.1|AC010723.1|lncRNA|chrY:14277349:14277489:-	0	-
#Partially deleted in new
chrY	1431901	1432377	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1431901:1432377:-	0	-
#Partially deleted in new
chrY	1435021	1435391	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1435021:1435391:-	0	-
#Deleted in new
chrY	1439096	1439144	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1439096:1439144:-	0	-
#Deleted in new
chrY	1441591	1442317	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1441591:1442317:-	0	-
#Deleted in new
chrY	1442185	1442317	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1442185:1442317:-	0	-
#Deleted in new
chrY	14522637	14522941	ENSG00000165246.13|NLGN4Y|pc|chrY:14522637:14522941:+	0	+
#Deleted in new
chrY	14522751	14522941	ENSG00000165246.13|NLGN4Y|pc|chrY:14522751:14522941:+	0	+
#Deleted in new
chrY	14523745	14523898	ENSG00000165246.13|NLGN4Y|pc|chrY:14523745:14523898:+	0	+
#Deleted in new
chrY	14524528	14524708	ENSG00000165246.13|NLGN4Y|pc|chrY:14524528:14524708:+	0	+
#Deleted in new
chrY	14524573	14524936	ENSG00000165246.13|NLGN4Y|pc|chrY:14524573:14524936:+	0	+
#Deleted in new
chrY	1452747	1452872	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1452747:1452872:-	0	-
#Deleted in new
chrY	1452747	1452873	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1452747:1452873:-	0	-
#Deleted in new
chrY	1452747	1452929	ENSG00000169093.15_PAR_Y|ASMTL|pc|chrY:1452747:1452929:-	0	-
#Partially deleted in new
chrY	14622008	14622368	ENSG00000165246.13|NLGN4Y|pc|chrY:14622008:14622368:+	0	+
#Partially deleted in new
chrY	1462571	1466582	ENSG00000182162.10_PAR_Y|P2RY8|pc|chrY:1462571:1466582:-	0	-
#Deleted in new
chrY	14733451	14733549	ENSG00000165246.13|NLGN4Y|pc|chrY:14733451:14733549:+	0	+
#Deleted in new
chrY	14748618	14748729	ENSG00000165246.13|NLGN4Y|pc|chrY:14748618:14748729:+	0	+
#Deleted in new
chrY	14751680	14751802	ENSG00000165246.13|NLGN4Y|pc|chrY:14751680:14751802:+	0	+
#Deleted in new
chrY	14793641	14793987	ENSG00000228787.1|NLGN4Y-AS1|lncRNA|chrY:14793641:14793987:-	0	-
#Deleted in new
chrY	14798621	14798709	ENSG00000228787.1|NLGN4Y-AS1|lncRNA|chrY:14798621:14798709:-	0	-
#Deleted in new
chrY	14801275	14801344	ENSG00000228787.1|NLGN4Y-AS1|lncRNA|chrY:14801275:14801344:-	0	-
#Deleted in new
chrY	14804004	14804033	ENSG00000228787.1|NLGN4Y-AS1|lncRNA|chrY:14804004:14804033:-	0	-
#Partially deleted in new
chrY	14840412	14843647	ENSG00000165246.13|NLGN4Y|pc|chrY:14840412:14843647:+	0	+
#Partially deleted in new
chrY	14840412	14843726	ENSG00000165246.13|NLGN4Y|pc|chrY:14840412:14843726:+	0	+
#Partially deleted in new
chrY	14840412	14845650	ENSG00000165246.13|NLGN4Y|pc|chrY:14840412:14845650:+	0	+
#Deleted in new
chrY	1494092	1494353	ENSG00000182162.10_PAR_Y|P2RY8|pc|chrY:1494092:1494353:-	0	-
#Deleted in new
chrY	1536920	1537107	ENSG00000182162.10_PAR_Y|P2RY8|pc|chrY:1536920:1537107:-	0	-
#Partially deleted in new
chrY	1599191	1600303	ENSG00000197976.11_PAR_Y|AKAP17A|pc|chrY:1599191:1600303:+	0	+
#Deleted in new
chrY	1600137	1600207	ENSG00000197976.11_PAR_Y|AKAP17A|pc|chrY:1600137:1600207:+	0	+
#Deleted in new
chrY	1615000	1615268	ENSG00000196433.12_PAR_Y|ASMT|pc|chrY:1615000:1615268:+	0	+
#Deleted in new
chrY	1615163	1615268	ENSG00000196433.12_PAR_Y|ASMT|pc|chrY:1615163:1615268:+	0	+
#Deleted in new
chrY	1615174	1615268	ENSG00000196433.12_PAR_Y|ASMT|pc|chrY:1615174:1615268:+	0	+
#Partially deleted in new
chrY	1627745	1628033	ENSG00000196433.12_PAR_Y|ASMT|pc|chrY:1627745:1628033:+	0	+
#Deleted in new
chrY	1632703	1632787	ENSG00000196433.12_PAR_Y|ASMT|pc|chrY:1632703:1632787:+	0	+
#Deleted in new
chrY	1633149	1633290	ENSG00000196433.12_PAR_Y|ASMT|pc|chrY:1633149:1633290:+	0	+
#Deleted in new
chrY	1636241	1636463	ENSG00000196433.12_PAR_Y|ASMT|pc|chrY:1636241:1636463:+	0	+
#Deleted in new
chrY	1636397	1636560	ENSG00000196433.12_PAR_Y|ASMT|pc|chrY:1636397:1636560:+	0	+
#Deleted in new
chrY	1636437	1636560	ENSG00000196433.12_PAR_Y|ASMT|pc|chrY:1636437:1636560:+	0	+
#Deleted in new
chrY	1642802	1643027	ENSG00000196433.12_PAR_Y|ASMT|pc|chrY:1642802:1643027:+	0	+
#Deleted in new
chrY	1642802	1643081	ENSG00000196433.12_PAR_Y|ASMT|pc|chrY:1642802:1643081:+	0	+
#Deleted in new
chrY	1732583	1732723	ENSG00000223511.6_PAR_Y|AL683807.1|lncRNA|chrY:1732583:1732723:+	0	+
#Deleted in new
chrY	1733949	1734196	ENSG00000223511.6_PAR_Y|AL683807.1|lncRNA|chrY:1733949:1734196:+	0	+
#Deleted in new
chrY	1734116	1734196	ENSG00000223511.6_PAR_Y|AL683807.1|lncRNA|chrY:1734116:1734196:+	0	+
#Deleted in new
chrY	1741930	1741988	ENSG00000223511.6_PAR_Y|AL683807.1|lncRNA|chrY:1741930:1741988:+	0	+
#Deleted in new
chrY	17500957	17501115	ENSG00000224989.2|FAM41AY1|lncRNA|chrY:17500957:17501115:+	0	+
#Deleted in new
chrY	17501710	17501760	ENSG00000224989.2|FAM41AY1|lncRNA|chrY:17501710:17501760:+	0	+
#Deleted in new
chrY	17513097	17513226	ENSG00000224989.2|FAM41AY1|lncRNA|chrY:17513097:17513226:+	0	+
#Partially deleted in new
chrY	17514160	17514331	ENSG00000224989.2|FAM41AY1|lncRNA|chrY:17514160:17514331:+	0	+
#Deleted in new
chrY	17552799	17553954	ENSG00000230663.1|FAM224B|lncRNA|chrY:17552799:17553954:-	0	-
#Deleted in new
chrY	17554041	17554126	ENSG00000230663.1|FAM224B|lncRNA|chrY:17554041:17554126:-	0	-
#Deleted in new
chrY	17555775	17556010	ENSG00000230663.1|FAM224B|lncRNA|chrY:17555775:17556010:-	0	-
#Deleted in new
chrY	1755683	1755985	ENSG00000223511.6_PAR_Y|AL683807.1|lncRNA|chrY:1755683:1755985:+	0	+
#Deleted in new
chrY	17576702	17576820	ENSG00000230663.1|FAM224B|lncRNA|chrY:17576702:17576820:-	0	-
#Deleted in new
chrY	17579315	17579754	ENSG00000230663.1|FAM224B|lncRNA|chrY:17579315:17579754:-	0	-
#Deleted in new
chrY	1767346	1767552	ENSG00000234622.6_PAR_Y|AL683807.2|lncRNA|chrY:1767346:1767552:+	0	+
#Deleted in new
chrY	1768434	1768776	ENSG00000234622.6_PAR_Y|AL683807.2|lncRNA|chrY:1768434:1768776:+	0	+
#Duplicated in new
chrY	17878259	17880220	ENSG00000129873.7|CDY2B|pc|chrY:17878259:17880220:-	0	-
#Duplicated in new
chrY	17878297	17880218	ENSG00000129873.7|CDY2B|pc|chrY:17878297:17880218:-	0	-
#Duplicated in new
chrY	18025786	18027740	ENSG00000182415.9|CDY2A|pc|chrY:18025786:18027740:+	0	+
#Duplicated in new
chrY	18025788	18027709	ENSG00000182415.9|CDY2A|pc|chrY:18025788:18027709:+	0	+
#Deleted in new
chrY	18326252	18326690	ENSG00000233522.1|FAM224A|lncRNA|chrY:18326252:18326690:+	0	+
#Deleted in new
chrY	18329190	18329308	ENSG00000233522.1|FAM224A|lncRNA|chrY:18329190:18329308:+	0	+
#Deleted in new
chrY	18349999	18350234	ENSG00000233522.1|FAM224A|lncRNA|chrY:18349999:18350234:+	0	+
#Deleted in new
chrY	18351883	18351968	ENSG00000233522.1|FAM224A|lncRNA|chrY:18351883:18351968:+	0	+
#Deleted in new
chrY	18352055	18353210	ENSG00000233522.1|FAM224A|lncRNA|chrY:18352055:18353210:+	0	+
#Partially deleted in new
chrY	18391680	18391851	ENSG00000226362.2|FAM41AY2|lncRNA|chrY:18391680:18391851:-	0	-
#Deleted in new
chrY	18392785	18392914	ENSG00000226362.2|FAM41AY2|lncRNA|chrY:18392785:18392914:-	0	-
#Deleted in new
chrY	18404243	18404293	ENSG00000226362.2|FAM41AY2|lncRNA|chrY:18404243:18404293:-	0	-
#Deleted in new
chrY	18404888	18405046	ENSG00000226362.2|FAM41AY2|lncRNA|chrY:18404888:18405046:-	0	-
#Deleted in new
chrY	18529639	18529837	ENSG00000251510.1|AC022486.1|lncRNA|chrY:18529639:18529837:+	0	+
#Deleted in new
chrY	18530487	18530596	ENSG00000251510.1|AC022486.1|lncRNA|chrY:18530487:18530596:+	0	+
#Deleted in new
chrY	18550113	18550223	ENSG00000172468.13|HSFY1|pc|chrY:18550113:18550223:+	0	+
#Deleted in new
chrY	18550782	18550869	ENSG00000172468.13|HSFY1|pc|chrY:18550782:18550869:+	0	+
#Deleted in new
chrY	18550782	18551465	ENSG00000172468.13|HSFY1|pc|chrY:18550782:18551465:+	0	+
#Deleted in new
chrY	18551916	18552071	ENSG00000172468.13|HSFY1|pc|chrY:18551916:18552071:+	0	+
#Deleted in new
chrY	18590379	18590521	ENSG00000131007.9|TTTY9B|lncRNA|chrY:18590379:18590521:-	0	-
#Deleted in new
chrY	18768330	18768485	ENSG00000169953.11|HSFY2|pc|chrY:18768330:18768485:-	0	-
#Deleted in new
chrY	18768920	18769619	ENSG00000169953.11|HSFY2|pc|chrY:18768920:18769619:-	0	-
#Deleted in new
chrY	18769532	18769619	ENSG00000169953.11|HSFY2|pc|chrY:18769532:18769619:-	0	-
#Deleted in new
chrY	18770182	18770292	ENSG00000169953.11|HSFY2|pc|chrY:18770182:18770292:-	0	-
#Deleted in new
chrY	18789810	18789919	ENSG00000169953.11|HSFY2|pc|chrY:18789810:18789919:-	0	-
#Deleted in new
chrY	18790569	18790767	ENSG00000169953.11|HSFY2|pc|chrY:18790569:18790767:-	0	-
#Deleted in new
chrY	18872500	18872834	ENSG00000176728.7|TTTY14|lncRNA|chrY:18872500:18872834:-	0	-
#Deleted in new
chrY	18872502	18872834	ENSG00000176728.7|TTTY14|lncRNA|chrY:18872502:18872834:-	0	-
#Deleted in new
chrY	18877067	18877205	ENSG00000176728.7|TTTY14|lncRNA|chrY:18877067:18877205:-	0	-
#Deleted in new
chrY	18877067	18878228	ENSG00000176728.7|TTTY14|lncRNA|chrY:18877067:18878228:-	0	-
#Deleted in new
chrY	18932316	18932841	ENSG00000176728.7|TTTY14|lncRNA|chrY:18932316:18932841:-	0	-
#Deleted in new
chrY	18932698	18932841	ENSG00000176728.7|TTTY14|lncRNA|chrY:18932698:18932841:-	0	-
#Deleted in new
chrY	19041497	19041586	ENSG00000176728.7|TTTY14|lncRNA|chrY:19041497:19041586:-	0	-
#Deleted in new
chrY	19045241	19045288	ENSG00000176728.7|TTTY14|lncRNA|chrY:19045241:19045288:-	0	-
#Deleted in new
chrY	19045241	19045291	ENSG00000176728.7|TTTY14|lncRNA|chrY:19045241:19045291:-	0	-
#Deleted in new
chrY	19048772	19048912	ENSG00000176728.7|TTTY14|lncRNA|chrY:19048772:19048912:-	0	-
#Deleted in new
chrY	19068723	19068798	ENSG00000176728.7|TTTY14|lncRNA|chrY:19068723:19068798:-	0	-
#Deleted in new
chrY	19691940	19694606	ENSG00000260197.1|AC010889.1|lncRNA|chrY:19691940:19694606:-	0	-
#Partially deleted in new
chrY	19721129	19722467	ENSG00000012817.15|KDM5D|pc|chrY:19721129:19722467:-	0	-
#Deleted in new
chrY	19723340	19723433	ENSG00000012817.15|KDM5D|pc|chrY:19723340:19723433:-	0	-
#Deleted in new
chrY	20465667	20465822	ENSG00000229236.1|TTTY10|lncRNA|chrY:20465667:20465822:-	0	-
#Deleted in new
chrY	20466427	20466667	ENSG00000229236.1|TTTY10|lncRNA|chrY:20466427:20466667:-	0	-
#Deleted in new
chrY	20468188	20468248	ENSG00000229236.1|TTTY10|lncRNA|chrY:20468188:20468248:-	0	-
#Deleted in new
chrY	20469871	20469981	ENSG00000229236.1|TTTY10|lncRNA|chrY:20469871:20469981:-	0	-
#Deleted in new
chrY	20507253	20507456	ENSG00000229236.1|TTTY10|lncRNA|chrY:20507253:20507456:-	0	-
#Deleted in new
chrY	20507351	20507456	ENSG00000229236.1|TTTY10|lncRNA|chrY:20507351:20507456:-	0	-
#Deleted in new
chrY	20518270	20518407	ENSG00000229236.1|TTTY10|lncRNA|chrY:20518270:20518407:-	0	-
#Deleted in new
chrY	20518270	20519228	ENSG00000229236.1|TTTY10|lncRNA|chrY:20518270:20519228:-	0	-
#Split in new
chrY	20586717	20589575	ENSG00000198692.9|EIF1AY|pc|chrY:20586717:20589575:+	0	+
#Deleted in new
chrY	20756163	20756166	ENSG00000280969.1|RPS4Y2|pc|chrY:20756163:20756166:+	0	+
#Deleted in new
chrY	21038288	21039044	ENSG00000254488.1|AC007876.1|lncRNA|chrY:21038288:21039044:-	0	-
#Deleted in new
chrY	21042268	21042369	ENSG00000254488.1|AC007876.1|lncRNA|chrY:21042268:21042369:-	0	-
#Deleted in new
chrY	21044598	21044724	ENSG00000254488.1|AC007876.1|lncRNA|chrY:21044598:21044724:-	0	-
#Deleted in new
chrY	21382953	21383280	ENSG00000183146.4|PRORY|pc|chrY:21382953:21383280:-	0	-
#Deleted in new
chrY	21383431	21383796	ENSG00000183146.4|PRORY|pc|chrY:21383431:21383796:-	0	-
#Deleted in new
chrY	21383912	21383969	ENSG00000183146.4|PRORY|pc|chrY:21383912:21383969:-	0	-
#Deleted in new
chrY	21386231	21386360	ENSG00000183146.4|PRORY|pc|chrY:21386231:21386360:-	0	-
#Deleted in new
chrY	21511337	21511485	ENSG00000242875.6|RBMY1B|pc|chrY:21511337:21511485:+	0	+
#Deleted in new
chrY	21511362	21511485	ENSG00000242875.6|RBMY1B|pc|chrY:21511362:21511485:+	0	+
#Deleted in new
chrY	21511371	21511485	ENSG00000234414.7|RBMY1A1|pc|chrY:21511371:21511485:+	0	+
#Deleted in new
chrY	21511424	21511485	ENSG00000234414.7|RBMY1A1|pc|chrY:21511424:21511485:+	0	+
#Deleted in new
chrY	21511424	21511485	ENSG00000242875.6|RBMY1B|pc|chrY:21511424:21511485:+	0	+
#Deleted in new
chrY	21534878	21535026	ENSG00000234414.7|RBMY1A1|pc|chrY:21534878:21535026:+	0	+
#Deleted in new
chrY	21534903	21535026	ENSG00000234414.7|RBMY1A1|pc|chrY:21534903:21535026:+	0	+
#Deleted in new
chrY	21545923	21546034	ENSG00000234414.7|RBMY1A1|pc|chrY:21545923:21546034:+	0	+
#Deleted in new
chrY	21583599	21583662	ENSG00000184991.2|TTTY13|lncRNA|chrY:21583599:21583662:-	0	-
#Deleted in new
chrY	21584782	21584874	ENSG00000184991.2|TTTY13|lncRNA|chrY:21584782:21584874:-	0	-
#Deleted in new
chrY	21587500	21587662	ENSG00000184991.2|TTTY13|lncRNA|chrY:21587500:21587662:-	0	-
#Deleted in new
chrY	21589271	21589370	ENSG00000184991.2|TTTY13|lncRNA|chrY:21589271:21589370:-	0	-
#Deleted in new
chrY	21589965	21590127	ENSG00000184991.2|TTTY13|lncRNA|chrY:21589965:21590127:-	0	-
#Deleted in new
chrY	21594585	21594666	ENSG00000184991.2|TTTY13|lncRNA|chrY:21594585:21594666:-	0	-
#Deleted in new
chrY	21894378	21894439	ENSG00000244395.6|RBMY1D|pc|chrY:21894378:21894439:-	0	-
#Deleted in new
chrY	21894378	21894501	ENSG00000244395.6|RBMY1D|pc|chrY:21894378:21894501:-	0	-
#Deleted in new
chrY	21894378	21894526	ENSG00000244395.6|RBMY1D|pc|chrY:21894378:21894526:-	0	-
#Deleted in new
chrY	21917919	21918032	ENSG00000242389.8|RBMY1E|pc|chrY:21917919:21918032:-	0	-
#Deleted in new
chrY	21917919	21918042	ENSG00000242389.8|RBMY1E|pc|chrY:21917919:21918042:-	0	-
#Deleted in new
chrY	21917919	21918067	ENSG00000242389.8|RBMY1E|pc|chrY:21917919:21918067:-	0	-
#Deleted in new
chrY	22071755	22072581	ENSG00000169807.10|PRY2|pc|chrY:22071755:22072581:-	0	-
#Deleted in new
chrY	22073643	22073758	ENSG00000169807.10|PRY2|pc|chrY:22073643:22073758:-	0	-
#Deleted in new
chrY	22082079	22082195	ENSG00000169807.10|PRY2|pc|chrY:22082079:22082195:-	0	-
#Deleted in new
chrY	22084770	22084891	ENSG00000169807.10|PRY2|pc|chrY:22084770:22084891:-	0	-
#Deleted in new
chrY	22095731	22095818	ENSG00000169807.10|PRY2|pc|chrY:22095731:22095818:-	0	-
#Deleted in new
chrY	22095919	22096007	ENSG00000169807.10|PRY2|pc|chrY:22095919:22096007:-	0	-
#Deleted in new
chrY	22100813	22101055	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22100813:22101055:-	0	-
#Deleted in new
chrY	22101691	22102369	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22101691:22102369:-	0	-
#Deleted in new
chrY	22102104	22102369	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22102104:22102369:-	0	-
#Deleted in new
chrY	22102884	22103002	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22102884:22103002:-	0	-
#Deleted in new
chrY	22103546	22103743	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22103546:22103743:-	0	-
#Deleted in new
chrY	22103863	22103949	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22103863:22103949:-	0	-
#Deleted in new
chrY	22105749	22105869	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22105749:22105869:-	0	-
#Deleted in new
chrY	22105749	22106085	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22105749:22106085:-	0	-
#Deleted in new
chrY	22107551	22107641	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22107551:22107641:-	0	-
#Deleted in new
chrY	22121283	22121637	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22121283:22121637:-	0	-
#Deleted in new
chrY	22122067	22122186	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22122067:22122186:-	0	-
#Deleted in new
chrY	22129364	22129450	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22129364:22129450:-	0	-
#Deleted in new
chrY	22129758	22129981	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22129758:22129981:-	0	-
#Deleted in new
chrY	22139949	22140090	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22139949:22140090:-	0	-
#Deleted in new
chrY	22144965	22145079	ENSG00000131548.7|TTTY6B|lncRNA|chrY:22144965:22145079:+	0	+
#Deleted in new
chrY	22145297	22145435	ENSG00000131548.7|TTTY6B|lncRNA|chrY:22145297:22145435:+	0	+
#Deleted in new
chrY	22146592	22146831	ENSG00000131548.7|TTTY6B|lncRNA|chrY:22146592:22146831:+	0	+
#Deleted in new
chrY	22146639	22146949	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22146639:22146949:-	0	-
#Deleted in new
chrY	22147283	22147484	ENSG00000236951.5|AC007359.1|lncRNA|chrY:22147283:22147484:-	0	-
#Deleted in new
chrY	22182834	22182948	ENSG00000169800.13|RBMY1F|pc|chrY:22182834:22182948:-	0	-
#Deleted in new
chrY	22182834	22182957	ENSG00000169800.13|RBMY1F|pc|chrY:22182834:22182957:-	0	-
#Deleted in new
chrY	22182834	22182982	ENSG00000169800.13|RBMY1F|pc|chrY:22182834:22182982:-	0	-
#Partially deleted in new
chrY	2219515	2221229	ENSG00000169084.13_PAR_Y|DHRSX|pc|chrY:2219515:2221229:-	0	-
#Deleted in new
chrY	22296797	22297788	ENSG00000215560.2|TTTY5|lncRNA|chrY:22296797:22297788:-	0	-
#Deleted in new
chrY	22298305	22298876	ENSG00000215560.2|TTTY5|lncRNA|chrY:22298305:22298876:-	0	-
#Deleted in new
chrY	22403460	22403582	ENSG00000226941.8|RBMY1J|pc|chrY:22403460:22403582:+	0	+
#Deleted in new
chrY	22403469	22403582	ENSG00000226941.8|RBMY1J|pc|chrY:22403469:22403582:+	0	+
#Deleted in new
chrY	22438939	22439140	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22438939:22439140:+	0	+
#Deleted in new
chrY	22439474	22439784	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22439474:22439784:+	0	+
#Deleted in new
chrY	22439592	22439831	ENSG00000131538.7|TTTY6|lncRNA|chrY:22439592:22439831:-	0	-
#Deleted in new
chrY	22440988	22441126	ENSG00000131538.7|TTTY6|lncRNA|chrY:22440988:22441126:-	0	-
#Deleted in new
chrY	22441344	22441458	ENSG00000131538.7|TTTY6|lncRNA|chrY:22441344:22441458:-	0	-
#Deleted in new
chrY	22446331	22446472	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22446331:22446472:+	0	+
#Deleted in new
chrY	22456434	22456657	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22456434:22456657:+	0	+
#Deleted in new
chrY	22456965	22457051	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22456965:22457051:+	0	+
#Deleted in new
chrY	22464229	22464348	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22464229:22464348:+	0	+
#Deleted in new
chrY	22464778	22465132	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22464778:22465132:+	0	+
#Deleted in new
chrY	22478764	22478854	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22478764:22478854:+	0	+
#Deleted in new
chrY	22480320	22480656	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22480320:22480656:+	0	+
#Deleted in new
chrY	22480536	22480656	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22480536:22480656:+	0	+
#Deleted in new
chrY	22482456	22482542	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22482456:22482542:+	0	+
#Deleted in new
chrY	22482662	22482859	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22482662:22482859:+	0	+
#Deleted in new
chrY	22483403	22483521	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22483403:22483521:+	0	+
#Deleted in new
chrY	22484036	22484301	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22484036:22484301:+	0	+
#Deleted in new
chrY	22484036	22484714	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22484036:22484714:+	0	+
#Deleted in new
chrY	22485350	22485592	ENSG00000235059.5|AC008175.1|lncRNA|chrY:22485350:22485592:+	0	+
#Deleted in new
chrY	22490396	22490484	ENSG00000169789.10|PRY|pc|chrY:22490396:22490484:+	0	+
#Deleted in new
chrY	22490585	22490672	ENSG00000169789.10|PRY|pc|chrY:22490585:22490672:+	0	+
#Deleted in new
chrY	22501512	22501633	ENSG00000169789.10|PRY|pc|chrY:22501512:22501633:+	0	+
#Deleted in new
chrY	22504208	22504324	ENSG00000169789.10|PRY|pc|chrY:22504208:22504324:+	0	+
#Deleted in new
chrY	22512637	22512752	ENSG00000169789.10|PRY|pc|chrY:22512637:22512752:+	0	+
#Deleted in new
chrY	22513811	22514637	ENSG00000169789.10|PRY|pc|chrY:22513811:22514637:+	0	+
#Deleted in new
chrY	2261393	2261767	ENSG00000169084.13_PAR_Y|DHRSX|pc|chrY:2261393:2261767:-	0	-
#Deleted in new
chrY	22851583	22851643	ENSG00000228240.1|TTTY17A|lncRNA|chrY:22851583:22851643:+	0	+
#Deleted in new
chrY	22852609	22852715	ENSG00000228240.1|TTTY17A|lncRNA|chrY:22852609:22852715:+	0	+
#Deleted in new
chrY	2291501	2291603	ENSG00000169084.13_PAR_Y|DHRSX|pc|chrY:2291501:2291603:-	0	-
#Deleted in new
chrY	22936454	22936615	ENSG00000226906.1|TTTY4|lncRNA|chrY:22936454:22936615:+	0	+
#Deleted in new
chrY	22963627	22963703	ENSG00000226906.1|TTTY4|lncRNA|chrY:22963627:22963703:+	0	+
#Deleted in new
chrY	22965507	22965615	ENSG00000226906.1|TTTY4|lncRNA|chrY:22965507:22965615:+	0	+
#Deleted in new
chrY	22972283	22973284	ENSG00000226906.1|TTTY4|lncRNA|chrY:22972283:22973284:+	0	+
#Deleted in new
chrY	22973818	22973974	ENSG00000183753.10|BPY2|pc|chrY:22973818:22973974:+	0	+
#Deleted in new
chrY	22984147	22984216	ENSG00000183753.10|BPY2|pc|chrY:22984147:22984216:+	0	+
#Deleted in new
chrY	22984262	22984293	ENSG00000183753.10|BPY2|pc|chrY:22984262:22984293:+	0	+
#Deleted in new
chrY	22984286	22984293	ENSG00000183753.10|BPY2|pc|chrY:22984286:22984293:+	0	+
#Deleted in new
chrY	22984568	22984691	ENSG00000183753.10|BPY2|pc|chrY:22984568:22984691:+	0	+
#Deleted in new
chrY	22987756	22987893	ENSG00000183753.10|BPY2|pc|chrY:22987756:22987893:+	0	+
#Deleted in new
chrY	22992302	22992376	ENSG00000183753.10|BPY2|pc|chrY:22992302:22992376:+	0	+
#Deleted in new
chrY	22992302	22992421	ENSG00000183753.10|BPY2|pc|chrY:22992302:22992421:+	0	+
#Deleted in new
chrY	22992343	22992421	ENSG00000183753.10|BPY2|pc|chrY:22992343:22992421:+	0	+
#Deleted in new
chrY	22994480	22994598	ENSG00000183753.10|BPY2|pc|chrY:22994480:22994598:+	0	+
#Deleted in new
chrY	22997451	22997557	ENSG00000183753.10|BPY2|pc|chrY:22997451:22997557:+	0	+
#Deleted in new
chrY	22998249	22998268	ENSG00000183753.10|BPY2|pc|chrY:22998249:22998268:+	0	+
#Deleted in new
chrY	22998249	22998374	ENSG00000183753.10|BPY2|pc|chrY:22998249:22998374:+	0	+
#Deleted in new
chrY	23004924	23005049	ENSG00000183753.10|BPY2|pc|chrY:23004924:23005049:+	0	+
#Deleted in new
chrY	23004924	23005054	ENSG00000183753.10|BPY2|pc|chrY:23004924:23005054:+	0	+
#Deleted in new
chrY	23005143	23005406	ENSG00000183753.10|BPY2|pc|chrY:23005143:23005406:+	0	+
#Deleted in new
chrY	23005143	23005465	ENSG00000183753.10|BPY2|pc|chrY:23005143:23005465:+	0	+
#Deleted in new
chrY	23162348	23162420	ENSG00000188120.14|DAZ1|pc|chrY:23162348:23162420:-	0	-
#Deleted in new
chrY	23243989	23244061	ENSG00000205944.11|DAZ2|pc|chrY:23243989:23244061:+	0	+
#Deleted in new
chrY	23251144	23251216	ENSG00000205944.11|DAZ2|pc|chrY:23251144:23251216:+	0	+
#Deleted in new
chrY	2334294	2334919	ENSG00000223571.6_PAR_Y|DHRSX-IT1|lncRNA|chrY:2334294:2334919:-	0	-
#Deleted in new
chrY	2336384	2336410	ENSG00000223571.6_PAR_Y|DHRSX-IT1|lncRNA|chrY:2336384:2336410:-	0	-
#Deleted in new
chrY	2337830	2337999	ENSG00000169084.13_PAR_Y|DHRSX|pc|chrY:2337830:2337999:-	0	-
#Deleted in new
chrY	2392353	2392474	ENSG00000169084.13_PAR_Y|DHRSX|pc|chrY:2392353:2392474:-	0	-
#Deleted in new
chrY	23939185	23939320	ENSG00000280961.1|TTTY3B|lncRNA|chrY:23939185:23939320:-	0	-
#Deleted in new
chrY	23941518	23941622	ENSG00000280961.1|TTTY3B|lncRNA|chrY:23941518:23941622:-	0	-
#Duplicated in new
chrY	24046096	24047969	ENSG00000172352.5|CDY1B|pc|chrY:24046096:24047969:-	0	-
#Deleted in new
chrY	2408744	2408813	ENSG00000169084.13_PAR_Y|DHRSX|pc|chrY:2408744:2408813:-	0	-
#Deleted in new
chrY	24485331	24485391	ENSG00000227439.1|TTTY17B|lncRNA|chrY:24485331:24485391:+	0	+
#Deleted in new
chrY	24486357	24486463	ENSG00000227439.1|TTTY17B|lncRNA|chrY:24486357:24486463:+	0	+
#Deleted in new
chrY	24570201	24570362	ENSG00000235412.1|TTTY4B|lncRNA|chrY:24570201:24570362:+	0	+
#Deleted in new
chrY	24597368	24597444	ENSG00000235412.1|TTTY4B|lncRNA|chrY:24597368:24597444:+	0	+
#Deleted in new
chrY	24599248	24599356	ENSG00000235412.1|TTTY4B|lncRNA|chrY:24599248:24599356:+	0	+
#Deleted in new
chrY	24606024	24607025	ENSG00000235412.1|TTTY4B|lncRNA|chrY:24606024:24607025:+	0	+
#Deleted in new
chrY	24607559	24607715	ENSG00000183795.8|BPY2B|pc|chrY:24607559:24607715:+	0	+
#Deleted in new
chrY	24617888	24617957	ENSG00000183795.8|BPY2B|pc|chrY:24617888:24617957:+	0	+
#Deleted in new
chrY	24618003	24618034	ENSG00000183795.8|BPY2B|pc|chrY:24618003:24618034:+	0	+
#Deleted in new
chrY	24618027	24618034	ENSG00000183795.8|BPY2B|pc|chrY:24618027:24618034:+	0	+
#Deleted in new
chrY	24618309	24618432	ENSG00000183795.8|BPY2B|pc|chrY:24618309:24618432:+	0	+
#Deleted in new
chrY	24621497	24621634	ENSG00000183795.8|BPY2B|pc|chrY:24621497:24621634:+	0	+
#Deleted in new
chrY	24626043	24626117	ENSG00000183795.8|BPY2B|pc|chrY:24626043:24626117:+	0	+
#Deleted in new
chrY	24626043	24626162	ENSG00000183795.8|BPY2B|pc|chrY:24626043:24626162:+	0	+
#Deleted in new
chrY	24626084	24626162	ENSG00000183795.8|BPY2B|pc|chrY:24626084:24626162:+	0	+
#Deleted in new
chrY	24628221	24628339	ENSG00000183795.8|BPY2B|pc|chrY:24628221:24628339:+	0	+
#Deleted in new
chrY	24631193	24631299	ENSG00000183795.8|BPY2B|pc|chrY:24631193:24631299:+	0	+
#Deleted in new
chrY	24631991	24632010	ENSG00000183795.8|BPY2B|pc|chrY:24631991:24632010:+	0	+
#Deleted in new
chrY	24631991	24632116	ENSG00000183795.8|BPY2B|pc|chrY:24631991:24632116:+	0	+
#Deleted in new
chrY	24638666	24638791	ENSG00000183795.8|BPY2B|pc|chrY:24638666:24638791:+	0	+
#Deleted in new
chrY	24638666	24638796	ENSG00000183795.8|BPY2B|pc|chrY:24638666:24638796:+	0	+
#Deleted in new
chrY	24638885	24639148	ENSG00000183795.8|BPY2B|pc|chrY:24638885:24639148:+	0	+
#Deleted in new
chrY	24638885	24639207	ENSG00000183795.8|BPY2B|pc|chrY:24638885:24639207:+	0	+
#Deleted in new
chrY	24788893	24788965	ENSG00000187191.14|DAZ3|pc|chrY:24788893:24788965:-	0	-
#Deleted in new
chrY	24796026	24796098	ENSG00000187191.14|DAZ3|pc|chrY:24796026:24796098:-	0	-
#Deleted in new
chrY	2486413	2490769	ENSG00000214717.11_PAR_Y|ZBED1|pc|chrY:2486413:2490769:-	0	-
#Deleted in new
chrY	2486413	2490772	ENSG00000214717.11_PAR_Y|ZBED1|pc|chrY:2486413:2490772:-	0	-
#Deleted in new
chrY	24864445	24864517	ENSG00000205916.11|DAZ4|pc|chrY:24864445:24864517:+	0	+
#Deleted in new
chrY	2486981	2487702	ENSG00000214717.11_PAR_Y|ZBED1|pc|chrY:2486981:2487702:-	0	-
#Deleted in new
chrY	24873975	24874047	ENSG00000205916.11|DAZ4|pc|chrY:24873975:24874047:+	0	+
#Deleted in new
chrY	2488185	2490772	ENSG00000214717.11_PAR_Y|ZBED1|pc|chrY:2488185:2490772:-	0	-
#Deleted in new
chrY	2488787	2488971	ENSG00000214717.11_PAR_Y|ZBED1|pc|chrY:2488787:2488971:-	0	-
#Deleted in new
chrY	24895687	24895759	ENSG00000205916.11|DAZ4|pc|chrY:24895687:24895759:+	0	+
#Deleted in new
chrY	2489904	2490772	ENSG00000214717.11_PAR_Y|ZBED1|pc|chrY:2489904:2490772:-	0	-
#Deleted in new
chrY	2500310	2500555	ENSG00000214717.11_PAR_Y|ZBED1|pc|chrY:2500310:2500555:-	0	-
#Deleted in new
chrY	2500310	2500589	ENSG00000169084.13_PAR_Y|DHRSX|pc|chrY:2500310:2500589:-	0	-
#Deleted in new
chrY	2500310	2500650	ENSG00000169084.13_PAR_Y|DHRSX|pc|chrY:2500310:2500650:-	0	-
#Deleted in new
chrY	2502760	2502805	ENSG00000169084.13_PAR_Y|DHRSX|pc|chrY:2502760:2502805:-	0	-
#Deleted in new
chrY	25030900	25031222	ENSG00000185894.8|BPY2C|pc|chrY:25030900:25031222:-	0	-
#Deleted in new
chrY	25030959	25031222	ENSG00000185894.8|BPY2C|pc|chrY:25030959:25031222:-	0	-
#Deleted in new
chrY	25031311	25031441	ENSG00000185894.8|BPY2C|pc|chrY:25031311:25031441:-	0	-
#Deleted in new
chrY	25031316	25031441	ENSG00000185894.8|BPY2C|pc|chrY:25031316:25031441:-	0	-
#Deleted in new
chrY	25037991	25038116	ENSG00000185894.8|BPY2C|pc|chrY:25037991:25038116:-	0	-
#Deleted in new
chrY	25038097	25038116	ENSG00000185894.8|BPY2C|pc|chrY:25038097:25038116:-	0	-
#Deleted in new
chrY	25038808	25038914	ENSG00000185894.8|BPY2C|pc|chrY:25038808:25038914:-	0	-
#Deleted in new
chrY	25041768	25041886	ENSG00000185894.8|BPY2C|pc|chrY:25041768:25041886:-	0	-
#Deleted in new
chrY	25043945	25044023	ENSG00000185894.8|BPY2C|pc|chrY:25043945:25044023:-	0	-
#Deleted in new
chrY	25043945	25044064	ENSG00000185894.8|BPY2C|pc|chrY:25043945:25044064:-	0	-
#Deleted in new
chrY	25043990	25044064	ENSG00000185894.8|BPY2C|pc|chrY:25043990:25044064:-	0	-
#Deleted in new
chrY	25048473	25048610	ENSG00000185894.8|BPY2C|pc|chrY:25048473:25048610:-	0	-
#Deleted in new
chrY	25051675	25051798	ENSG00000185894.8|BPY2C|pc|chrY:25051675:25051798:-	0	-
#Deleted in new
chrY	25052073	25052080	ENSG00000185894.8|BPY2C|pc|chrY:25052073:25052080:-	0	-
#Deleted in new
chrY	25052073	25052104	ENSG00000185894.8|BPY2C|pc|chrY:25052073:25052104:-	0	-
#Deleted in new
chrY	25052150	25052219	ENSG00000185894.8|BPY2C|pc|chrY:25052150:25052219:-	0	-
#Deleted in new
chrY	25062392	25062548	ENSG00000185894.8|BPY2C|pc|chrY:25062392:25062548:-	0	-
#Deleted in new
chrY	25063082	25064083	ENSG00000228296.1|TTTY4C|lncRNA|chrY:25063082:25064083:-	0	-
#Deleted in new
chrY	25070733	25070841	ENSG00000228296.1|TTTY4C|lncRNA|chrY:25070733:25070841:-	0	-
#Deleted in new
chrY	25072645	25072721	ENSG00000228296.1|TTTY4C|lncRNA|chrY:25072645:25072721:-	0	-
#Deleted in new
chrY	25099731	25099892	ENSG00000228296.1|TTTY4C|lncRNA|chrY:25099731:25099892:-	0	-
#Deleted in new
chrY	25183642	25183748	ENSG00000223641.1|TTTY17C|lncRNA|chrY:25183642:25183748:-	0	-
#Deleted in new
chrY	25184713	25184773	ENSG00000223641.1|TTTY17C|lncRNA|chrY:25184713:25184773:-	0	-
#Deleted in new
chrY	25394625	25394719	ENSG00000228786.5|LINC00266-4P|lncRNA|chrY:25394625:25394719:-	0	-
#Duplicated in new
chrY	25622161	25624034	ENSG00000172288.7|CDY1|pc|chrY:25622161:25624034:+	0	+
#Deleted in new
chrY	25728489	25728593	ENSG00000231141.1|TTTY3|lncRNA|chrY:25728489:25728593:+	0	+
#Deleted in new
chrY	25730791	25730926	ENSG00000231141.1|TTTY3|lncRNA|chrY:25730791:25730926:+	0	+
#Deleted in new
chrY	2612987	2613696	ENSG00000230542.6_PAR_Y|LINC00102|lncRNA|chrY:2612987:2613696:-	0	-
#Deleted in new
chrY	2614716	2615347	ENSG00000230542.6_PAR_Y|LINC00102|lncRNA|chrY:2614716:2615347:-	0	-
#Deleted in new
chrY	2691178	2691427	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2691178:2691427:+	0	+
#Deleted in new
chrY	2691186	2691427	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2691186:2691427:+	0	+
#Deleted in new
chrY	2691275	2691427	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2691275:2691427:+	0	+
#Deleted in new
chrY	2691279	2691427	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2691279:2691427:+	0	+
#Deleted in new
chrY	2691309	2691427	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2691309:2691427:+	0	+
#Deleted in new
chrY	2691312	2691427	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2691312:2691427:+	0	+
#Deleted in new
chrY	2691360	2691427	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2691360:2691427:+	0	+
#Deleted in new
chrY	2691499	2691695	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2691499:2691695:+	0	+
#Deleted in new
chrY	2691787	2692250	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2691787:2692250:+	0	+
#Deleted in new
chrY	2714421	2714454	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2714421:2714454:+	0	+
#Deleted in new
chrY	2717373	2717474	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2717373:2717474:+	0	+
#Deleted in new
chrY	2717604	2717652	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2717604:2717652:+	0	+
#Deleted in new
chrY	2719067	2719705	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2719067:2719705:+	0	+
#Deleted in new
chrY	2719660	2719705	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2719660:2719705:+	0	+
#Deleted in new
chrY	2720355	2720424	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2720355:2720424:+	0	+
#Deleted in new
chrY	2722626	2722674	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2722626:2722674:+	0	+
#Deleted in new
chrY	2723313	2723364	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2723313:2723364:+	0	+
#Deleted in new
chrY	2726259	2726363	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2726259:2726363:+	0	+
#Deleted in new
chrY	2726259	2726373	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2726259:2726373:+	0	+
#Deleted in new
chrY	2726340	2726373	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2726340:2726373:+	0	+
#Deleted in new
chrY	2727292	2727343	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2727292:2727343:+	0	+
#Deleted in new
chrY	2733356	2733374	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2733356:2733374:+	0	+
#Deleted in new
chrY	2733356	2733667	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2733356:2733667:+	0	+
#Deleted in new
chrY	2733356	2733672	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2733356:2733672:+	0	+
#Deleted in new
chrY	2737880	2738256	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2737880:2738256:+	0	+
#Deleted in new
chrY	2738199	2738256	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2738199:2738256:+	0	+
#Deleted in new
chrY	2738202	2738256	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2738202:2738256:+	0	+
#Deleted in new
chrY	2740778	2740804	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2740778:2740804:+	0	+
#Deleted in new
chrY	2740778	2741101	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2740778:2741101:+	0	+
#Deleted in new
chrY	2740778	2741125	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2740778:2741125:+	0	+
#Deleted in new
chrY	2740778	2741290	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2740778:2741290:+	0	+
#Deleted in new
chrY	2740778	2741300	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2740778:2741300:+	0	+
#Deleted in new
chrY	2740778	2741309	ENSG00000002586.18_PAR_Y|CD99|pc|chrY:2740778:2741309:+	0	+
#Deleted in new
chrY	276321	276394	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:276321:276394:+	0	+
#Deleted in new
chrY	276323	276394	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:276323:276394:+	0	+
#Deleted in new
chrY	276352	276394	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:276352:276394:+	0	+
#Split in new
chrY	281191	281684	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:281191:281684:+	0	+
#Deleted in new
chrY	281461	281684	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:281461:281684:+	0	+
#Deleted in new
chrY	281481	281684	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:281481:281684:+	0	+
#Deleted in new
chrY	283162	283201	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:283162:283201:+	0	+
#Deleted in new
chrY	283464	283488	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:283464:283488:+	0	+
#Deleted in new
chrY	283478	283520	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:283478:283520:+	0	+
#Partially deleted in new
chrY	283733	284314	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:283733:284314:+	0	+
#Deleted in new
chrY	2841485	2841627	ENSG00000129824.15|RPS4Y1|pc|chrY:2841485:2841627:+	0	+
#Deleted in new
chrY	2841919	2841973	ENSG00000129824.15|RPS4Y1|pc|chrY:2841919:2841973:+	0	+
#Partially deleted in new
chrY	2866792	2867268	ENSG00000129824.15|RPS4Y1|pc|chrY:2866792:2867268:+	0	+
#Deleted in new
chrY	2931710	2932000	ENSG00000129824.15|RPS4Y1|pc|chrY:2931710:2932000:+	0	+
#Deleted in new
chrY	2966843	2966939	ENSG00000233070.1|ZFY-AS1|lncRNA|chrY:2966843:2966939:-	0	-
#Partially deleted in new
chrY	299096	303353	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:299096:303353:+	0	+
#Partially deleted in new
chrY	299096	303356	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:299096:303356:+	0	+
#Deleted in new
chrY	3001627	3001923	ENSG00000233070.1|ZFY-AS1|lncRNA|chrY:3001627:3001923:-	0	-
#Deleted in new
chrY	3002312	3002401	ENSG00000233070.1|ZFY-AS1|lncRNA|chrY:3002312:3002401:-	0	-
#Deleted in new
chrY	3002312	3002626	ENSG00000233070.1|ZFY-AS1|lncRNA|chrY:3002312:3002626:-	0	-
#Deleted in new
chrY	3002537	3002571	ENSG00000233070.1|ZFY-AS1|lncRNA|chrY:3002537:3002571:-	0	-
#Deleted in new
chrY	3002911	3003217	ENSG00000231535.5|LINC00278|lncRNA|chrY:3002911:3003217:+	0	+
#Deleted in new
chrY	3002997	3003217	ENSG00000231535.5|LINC00278|lncRNA|chrY:3002997:3003217:+	0	+
#Deleted in new
chrY	302836	303353	ENSG00000182378.13_PAR_Y|PLCXD1|pc|chrY:302836:303353:+	0	+
#Partially deleted in new
chrY	304528	305197	ENSG00000178605.13_PAR_Y|GTPBP6|pc|chrY:304528:305197:-	0	-
#Partially deleted in new
chrY	304749	305197	ENSG00000178605.13_PAR_Y|GTPBP6|pc|chrY:304749:305197:-	0	-
#Deleted in new
chrY	3079283	3079341	ENSG00000231535.5|LINC00278|lncRNA|chrY:3079283:3079341:+	0	+
#Partially deleted in new
chrY	311418	312463	ENSG00000178605.13_PAR_Y|GTPBP6|pc|chrY:311418:312463:-	0	-
#Deleted in new
chrY	320989	321248	ENSG00000226179.6_PAR_Y|LINC00685|lncRNA|chrY:320989:321248:+	0	+
#Deleted in new
chrY	321682	321851	ENSG00000226179.6_PAR_Y|LINC00685|lncRNA|chrY:321682:321851:+	0	+
#Deleted in new
chrY	333962	334517	ENSG00000167393.17_PAR_Y|PPP2R3B|pc|chrY:333962:334517:-	0	-
#Deleted in new
chrY	334234	334517	ENSG00000167393.17_PAR_Y|PPP2R3B|pc|chrY:334234:334517:-	0	-
#Split in new
chrY	334238	338710	ENSG00000167393.17_PAR_Y|PPP2R3B|pc|chrY:334238:338710:-	0	-
#Partially deleted in new
chrY	341306	341711	ENSG00000167393.17_PAR_Y|PPP2R3B|pc|chrY:341306:341711:-	0	-
#Partially deleted in new
chrY	341306	341931	ENSG00000167393.17_PAR_Y|PPP2R3B|pc|chrY:341306:341931:-	0	-
#Partially deleted in new
chrY	341882	342237	ENSG00000167393.17_PAR_Y|PPP2R3B|pc|chrY:341882:342237:-	0	-
#Partially deleted in new
chrY	344895	345672	ENSG00000167393.17_PAR_Y|PPP2R3B|pc|chrY:344895:345672:-	0	-
#Deleted in new
chrY	361404	361516	ENSG00000167393.17_PAR_Y|PPP2R3B|pc|chrY:361404:361516:-	0	-
#Deleted in new
chrY	361404	361590	ENSG00000167393.17_PAR_Y|PPP2R3B|pc|chrY:361404:361590:-	0	-
#Deleted in new
chrY	362254	362332	ENSG00000167393.17_PAR_Y|PPP2R3B|pc|chrY:362254:362332:-	0	-
#Deleted in new
chrY	386979	387290	ENSG00000281849.3_PAR_Y|AL732314.6|lncRNA|chrY:386979:387290:+	0	+
#Deleted in new
chrY	4036496	4036720	ENSG00000229308.1|AC010737.1|lncRNA|chrY:4036496:4036720:+	0	+
#Deleted in new
chrY	405406	405579	ENSG00000281849.3_PAR_Y|AL732314.6|lncRNA|chrY:405406:405579:+	0	+
#Deleted in new
chrY	4099985	4100320	ENSG00000229308.1|AC010737.1|lncRNA|chrY:4099985:4100320:+	0	+
#Deleted in new
chrY	419156	419362	ENSG00000280767.3_PAR_Y|AL732314.4|lncRNA|chrY:419156:419362:+	0	+
#Deleted in new
chrY	421671	421980	ENSG00000280767.3_PAR_Y|AL732314.4|lncRNA|chrY:421671:421980:+	0	+
#Deleted in new
chrY	5030898	5031067	ENSG00000099715.14|PCDH11Y|pc|chrY:5030898:5031067:+	0	+
#Deleted in new
chrY	57194418	57194566	ENSG00000124334.17_PAR_Y|IL9R|pc|chrY:57194418:57194566:+	0	+
#Deleted in new
chrY	57201142	57202020	ENSG00000185203.12_PAR_Y|WASIR1|lncRNA|chrY:57201142:57202020:-	0	-
#Deleted in new
chrY	57203181	57203357	ENSG00000185203.12_PAR_Y|WASIR1|lncRNA|chrY:57203181:57203357:-	0	-
#Deleted in new
chrY	624343	624602	ENSG00000185960.13_PAR_Y|SHOX|pc|chrY:624343:624602:+	0	+
#Partially deleted in new
chrY	6246222	6246355	ENSG00000168757.12|TSPY2|pc|chrY:6246222:6246355:+	0	+
#Deleted in new
chrY	6248235	6249019	ENSG00000168757.12|TSPY2|pc|chrY:6248235:6249019:+	0	+
#Deleted in new
chrY	6248802	6248892	ENSG00000168757.12|TSPY2|pc|chrY:6248802:6248892:+	0	+
#Deleted in new
chrY	6248802	6249004	ENSG00000168757.12|TSPY2|pc|chrY:6248802:6249004:+	0	+
#Deleted in new
chrY	6248802	6249012	ENSG00000168757.12|TSPY2|pc|chrY:6248802:6249012:+	0	+
#Deleted in new
chrY	6248802	6249013	ENSG00000168757.12|TSPY2|pc|chrY:6248802:6249013:+	0	+
#Partially deleted in new
chrY	630465	631174	ENSG00000185960.13_PAR_Y|SHOX|pc|chrY:630465:631174:+	0	+
#Deleted in new
chrY	6357218	6357437	ENSG00000229643.1|LINC00280|lncRNA|chrY:6357218:6357437:-	0	-
#Deleted in new
chrY	6358683	6358826	ENSG00000229643.1|LINC00280|lncRNA|chrY:6358683:6358826:-	0	-
#Deleted in new
chrY	6390430	6390675	ENSG00000129816.5|TTTY1B|lncRNA|chrY:6390430:6390675:+	0	+
#Deleted in new
chrY	6394099	6394259	ENSG00000129816.5|TTTY1B|lncRNA|chrY:6394099:6394259:+	0	+
#Deleted in new
chrY	6401122	6401231	ENSG00000129816.5|TTTY1B|lncRNA|chrY:6401122:6401231:+	0	+
#Deleted in new
chrY	6403587	6403725	ENSG00000129816.5|TTTY1B|lncRNA|chrY:6403587:6403725:+	0	+
#Deleted in new
chrY	6406243	6406923	ENSG00000212856.5|TTTY2B|lncRNA|chrY:6406243:6406923:-	0	-
#Deleted in new
chrY	6408146	6408344	ENSG00000212856.5|TTTY2B|lncRNA|chrY:6408146:6408344:-	0	-
#Deleted in new
chrY	6408464	6408543	ENSG00000212856.5|TTTY2B|lncRNA|chrY:6408464:6408543:-	0	-
#Deleted in new
chrY	6411306	6411564	ENSG00000129816.5|TTTY1B|lncRNA|chrY:6411306:6411564:+	0	+
#Deleted in new
chrY	6411373	6411530	ENSG00000212856.5|TTTY2B|lncRNA|chrY:6411373:6411530:-	0	-
#Deleted in new
chrY	6412222	6412371	ENSG00000212856.5|TTTY2B|lncRNA|chrY:6412222:6412371:-	0	-
#Deleted in new
chrY	6419764	6419851	ENSG00000212856.5|TTTY2B|lncRNA|chrY:6419764:6419851:-	0	-
#Deleted in new
chrY	6422327	6424145	ENSG00000212856.5|TTTY2B|lncRNA|chrY:6422327:6424145:-	0	-
#Deleted in new
chrY	6443433	6443635	ENSG00000237563.1|TTTY21B|lncRNA|chrY:6443433:6443635:+	0	+
#Partially deleted in new
chrY	644390	645568	ENSG00000185960.13_PAR_Y|SHOX|pc|chrY:644390:645568:+	0	+
#Partially deleted in new
chrY	644390	646823	ENSG00000185960.13_PAR_Y|SHOX|pc|chrY:644390:646823:+	0	+
#Deleted in new
chrY	6446972	6447077	ENSG00000237563.1|TTTY21B|lncRNA|chrY:6446972:6447077:+	0	+
#Deleted in new
chrY	6449467	6449504	ENSG00000147753.9|TTTY7|lncRNA|chrY:6449467:6449504:+	0	+
#Deleted in new
chrY	6450445	6450607	ENSG00000147753.9|TTTY7|lncRNA|chrY:6450445:6450607:+	0	+
#Deleted in new
chrY	6452914	6452989	ENSG00000147753.9|TTTY7|lncRNA|chrY:6452914:6452989:+	0	+
#Deleted in new
chrY	6453677	6454154	ENSG00000147753.9|TTTY7|lncRNA|chrY:6453677:6454154:+	0	+
#Deleted in new
chrY	6453904	6454154	ENSG00000147753.9|TTTY7|lncRNA|chrY:6453904:6454154:+	0	+
#Deleted in new
chrY	6455972	6456185	ENSG00000147753.9|TTTY7|lncRNA|chrY:6455972:6456185:+	0	+
#Deleted in new
chrY	6456071	6456185	ENSG00000147753.9|TTTY7|lncRNA|chrY:6456071:6456185:+	0	+
#Deleted in new
chrY	6457158	6457414	ENSG00000147753.9|TTTY7|lncRNA|chrY:6457158:6457414:+	0	+
#Deleted in new
chrY	6457660	6457906	ENSG00000147753.9|TTTY7|lncRNA|chrY:6457660:6457906:+	0	+
#Deleted in new
chrY	6470772	6470949	ENSG00000185700.10|TTTY8B|lncRNA|chrY:6470772:6470949:-	0	-
#Deleted in new
chrY	6471030	6471220	ENSG00000185700.10|TTTY8B|lncRNA|chrY:6471030:6471220:-	0	-
#Deleted in new
chrY	6472812	6473017	ENSG00000185700.10|TTTY8B|lncRNA|chrY:6472812:6473017:-	0	-
#Deleted in new
chrY	6473494	6473630	ENSG00000185700.10|TTTY8B|lncRNA|chrY:6473494:6473630:-	0	-
#Deleted in new
chrY	658784	659411	ENSG00000185960.13_PAR_Y|SHOX|pc|chrY:658784:659411:+	0	+
#Partially deleted in new
chrY	6918681	6920791	ENSG00000273906.1|AC011297.1|lncRNA|chrY:6918681:6920791:+	0	+
#Deleted in new
chrY	6978212	6978243	ENSG00000092377.13|TBL1Y|pc|chrY:6978212:6978243:+	0	+
#Deleted in new
chrY	6995803	6995898	ENSG00000092377.13|TBL1Y|pc|chrY:6995803:6995898:+	0	+
#Deleted in new
chrY	7699356	7699487	ENSG00000225520.1|TTTY16|lncRNA|chrY:7699356:7699487:-	0	-
#Deleted in new
chrY	7701186	7701247	ENSG00000225520.1|TTTY16|lncRNA|chrY:7701186:7701247:-	0	-
#Deleted in new
chrY	7804923	7805079	ENSG00000237048.2|TTTY12|lncRNA|chrY:7804923:7805079:+	0	+
#Deleted in new
chrY	7809860	7810683	ENSG00000237048.2|TTTY12|lncRNA|chrY:7809860:7810683:+	0	+
#Deleted in new
chrY	8638293	8638406	ENSG00000232348.2|LINC00279|lncRNA|chrY:8638293:8638406:+	0	+
#Deleted in new
chrY	8644131	8644327	ENSG00000232348.2|LINC00279|lncRNA|chrY:8644131:8644327:+	0	+
#Deleted in new
chrY	8644678	8644842	ENSG00000232348.2|LINC00279|lncRNA|chrY:8644678:8644842:+	0	+
#Deleted in new
chrY	8683369	8683432	ENSG00000233699.1|TTTY18|lncRNA|chrY:8683369:8683432:-	0	-
#Deleted in new
chrY	8683720	8683878	ENSG00000233699.1|TTTY18|lncRNA|chrY:8683720:8683878:-	0	-
#Deleted in new
chrY	8704471	8704559	ENSG00000232419.1|TTTY19|lncRNA|chrY:8704471:8704559:+	0	+
#Deleted in new
chrY	8705102	8705283	ENSG00000232419.1|TTTY19|lncRNA|chrY:8705102:8705283:+	0	+
#Deleted in new
chrY	8783309	8783406	ENSG00000180910.7|TTTY11|lncRNA|chrY:8783309:8783406:-	0	-
#Deleted in new
chrY	8783887	8784203	ENSG00000180910.7|TTTY11|lncRNA|chrY:8783887:8784203:-	0	-
#Deleted in new
chrY	8794860	8794944	ENSG00000180910.7|TTTY11|lncRNA|chrY:8794860:8794944:-	0	-
#Deleted in new
chrY	8817345	8817382	ENSG00000180910.7|TTTY11|lncRNA|chrY:8817345:8817382:-	0	-
#Deleted in new
chrY	9329879	9330056	ENSG00000232808.1|TTTY20|lncRNA|chrY:9329879:9330056:-	0	-
#Deleted in new
chrY	9334750	9334832	ENSG00000232808.1|TTTY20|lncRNA|chrY:9334750:9334832:-	0	-
#Partially deleted in new
chrY	9337509	9337596	ENSG00000233803.9|TSPY4|pc|chrY:9337509:9337596:+	0	+
#Deleted in new
chrY	9339500	9340284	ENSG00000233803.9|TSPY4|pc|chrY:9339500:9340284:+	0	+
#Deleted in new
chrY	9340067	9340269	ENSG00000233803.9|TSPY4|pc|chrY:9340067:9340269:+	0	+
#Deleted in new
chrY	9340067	9340277	ENSG00000233803.9|TSPY4|pc|chrY:9340067:9340277:+	0	+
#Deleted in new
chrY	9340067	9340278	ENSG00000233803.9|TSPY4|pc|chrY:9340067:9340278:+	0	+
#Duplicated in new
chrY	9357842	9357929	ENSG00000229549.9|TSPY8|pc|chrY:9357842:9357929:+	0	+
#Deleted in new
chrY	9359815	9360599	ENSG00000229549.9|TSPY8|pc|chrY:9359815:9360599:+	0	+
#Deleted in new
chrY	9360382	9360584	ENSG00000229549.9|TSPY8|pc|chrY:9360382:9360584:+	0	+
#Deleted in new
chrY	9360382	9360592	ENSG00000229549.9|TSPY8|pc|chrY:9360382:9360592:+	0	+
#Deleted in new
chrY	9360382	9360593	ENSG00000229549.9|TSPY8|pc|chrY:9360382:9360593:+	0	+
#Duplicated in new
chrY	9398466	9398553	ENSG00000228927.10|TSPY3|pc|chrY:9398466:9398553:+	0	+
#Deleted in new
chrY	9400439	9401223	ENSG00000228927.10|TSPY3|pc|chrY:9400439:9401223:+	0	+
#Deleted in new
chrY	9401006	9401208	ENSG00000228927.10|TSPY3|pc|chrY:9401006:9401208:+	0	+
#Deleted in new
chrY	9401006	9401216	ENSG00000228927.10|TSPY3|pc|chrY:9401006:9401216:+	0	+
#Deleted in new
chrY	9401006	9401217	ENSG00000228927.10|TSPY3|pc|chrY:9401006:9401217:+	0	+
#Deleted in new
chrY	9458612	9458802	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9458612:9458802:-	0	-
#Deleted in new
chrY	9458742	9458802	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9458742:9458802:-	0	-
#Deleted in new
chrY	9462357	9462443	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9462357:9462443:-	0	-
#Deleted in new
chrY	9462357	9462516	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9462357:9462516:-	0	-
#Deleted in new
chrY	9464243	9464316	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9464243:9464316:-	0	-
#Deleted in new
chrY	9464243	9464345	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9464243:9464345:-	0	-
#Deleted in new
chrY	9464243	9464357	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9464243:9464357:-	0	-
#Deleted in new
chrY	9464317	9464353	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9464317:9464353:-	0	-
#Deleted in new
chrY	9464549	9464614	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9464549:9464614:-	0	-
#Deleted in new
chrY	9464767	9464813	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9464767:9464813:-	0	-
#Deleted in new
chrY	9465024	9465056	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9465024:9465056:-	0	-
#Deleted in new
chrY	9465241	9465274	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9465241:9465274:-	0	-
#Deleted in new
chrY	9465682	9465974	ENSG00000225516.6|FAM197Y5|lncRNA|chrY:9465682:9465974:-	0	-
#Deleted in new
chrY	9469538	9469748	ENSG00000258992.6|TSPY1|pc|chrY:9469538:9469748:+	0	+
#Deleted in new
chrY	9529898	9530682	ENSG00000236424.7|TSPY10|pc|chrY:9529898:9530682:+	0	+
#Deleted in new
chrY	9530465	9530667	ENSG00000236424.7|TSPY10|pc|chrY:9530465:9530667:+	0	+
#Deleted in new
chrY	9530465	9530675	ENSG00000236424.7|TSPY10|pc|chrY:9530465:9530675:+	0	+
#Deleted in new
chrY	9530465	9530676	ENSG00000236424.7|TSPY10|pc|chrY:9530465:9530676:+	0	+
#Deleted in new
chrY	9691099	9691235	ENSG00000183385.9|TTTY8|lncRNA|chrY:9691099:9691235:+	0	+
#Deleted in new
chrY	9691712	9691917	ENSG00000183385.9|TTTY8|lncRNA|chrY:9691712:9691917:+	0	+
#Deleted in new
chrY	9693509	9693699	ENSG00000183385.9|TTTY8|lncRNA|chrY:9693509:9693699:+	0	+
#Deleted in new
chrY	9693780	9693957	ENSG00000183385.9|TTTY8|lncRNA|chrY:9693780:9693957:+	0	+
#Deleted in new
chrY	9706823	9707069	ENSG00000147761.8|TTTY7B|lncRNA|chrY:9706823:9707069:-	0	-
#Deleted in new
chrY	9707315	9707571	ENSG00000147761.8|TTTY7B|lncRNA|chrY:9707315:9707571:-	0	-
#Deleted in new
chrY	9708544	9708658	ENSG00000147761.8|TTTY7B|lncRNA|chrY:9708544:9708658:-	0	-
#Deleted in new
chrY	9708544	9708757	ENSG00000147761.8|TTTY7B|lncRNA|chrY:9708544:9708757:-	0	-
#Deleted in new
chrY	9710575	9710825	ENSG00000147761.8|TTTY7B|lncRNA|chrY:9710575:9710825:-	0	-
#Deleted in new
chrY	9710575	9711052	ENSG00000147761.8|TTTY7B|lncRNA|chrY:9710575:9711052:-	0	-
#Deleted in new
chrY	9711740	9711815	ENSG00000147761.8|TTTY7B|lncRNA|chrY:9711740:9711815:-	0	-
#Deleted in new
chrY	9714122	9714284	ENSG00000147761.8|TTTY7B|lncRNA|chrY:9714122:9714284:-	0	-
#Deleted in new
chrY	9715225	9715262	ENSG00000147761.8|TTTY7B|lncRNA|chrY:9715225:9715262:-	0	-
#Deleted in new
chrY	9717652	9717757	ENSG00000228890.1|TTTY21|lncRNA|chrY:9717652:9717757:-	0	-
#Deleted in new
chrY	9721094	9721296	ENSG00000228890.1|TTTY21|lncRNA|chrY:9721094:9721296:-	0	-
#Deleted in new
chrY	9740583	9742401	ENSG00000212855.5|TTTY2|lncRNA|chrY:9740583:9742401:+	0	+
#Deleted in new
chrY	9744877	9744964	ENSG00000212855.5|TTTY2|lncRNA|chrY:9744877:9744964:+	0	+
#Deleted in new
chrY	9752348	9752497	ENSG00000212855.5|TTTY2|lncRNA|chrY:9752348:9752497:+	0	+
#Deleted in new
chrY	9753155	9753413	ENSG00000129845.5|TTTY1|lncRNA|chrY:9753155:9753413:-	0	-
#Deleted in new
chrY	9753189	9753346	ENSG00000212855.5|TTTY2|lncRNA|chrY:9753189:9753346:+	0	+
#Deleted in new
chrY	9756176	9756255	ENSG00000212855.5|TTTY2|lncRNA|chrY:9756176:9756255:+	0	+
#Deleted in new
chrY	9756375	9756573	ENSG00000212855.5|TTTY2|lncRNA|chrY:9756375:9756573:+	0	+
#Deleted in new
chrY	9757796	9758476	ENSG00000212855.5|TTTY2|lncRNA|chrY:9757796:9758476:+	0	+
#Deleted in new
chrY	9760994	9761132	ENSG00000129845.5|TTTY1|lncRNA|chrY:9760994:9761132:-	0	-
#Deleted in new
chrY	9763488	9763597	ENSG00000129845.5|TTTY1|lncRNA|chrY:9763488:9763597:-	0	-
#Deleted in new
chrY	9770460	9770620	ENSG00000129845.5|TTTY1|lncRNA|chrY:9770460:9770620:-	0	-
#Deleted in new
chrY	9774044	9774289	ENSG00000129845.5|TTTY1|lncRNA|chrY:9774044:9774289:-	0	-
#Deleted in new
chrY	9801152	9801307	ENSG00000224075.1|TTTY22|lncRNA|chrY:9801152:9801307:+	0	+
#Deleted in new
chrY	9804773	9804885	ENSG00000224075.1|TTTY22|lncRNA|chrY:9804773:9804885:+	0	+
#Deleted in new
chrY	9809310	9809385	ENSG00000224075.1|TTTY22|lncRNA|chrY:9809310:9809385:+	0	+
#Deleted in new
chrY	9810070	9810109	ENSG00000224075.1|TTTY22|lncRNA|chrY:9810070:9810109:+	0	+
#Deleted in new
chrY	9815901	9816044	ENSG00000228379.1|AC010891.1|lncRNA|chrY:9815901:9816044:+	0	+
#Deleted in new
chrY	9817294	9817513	ENSG00000228379.1|AC010891.1|lncRNA|chrY:9817294:9817513:+	0	+
#Deleted in new
chrY	990220	990427	ENSG00000237531.6_PAR_Y|AL672277.1|lncRNA|chrY:990220:990427:+	0	+
#Deleted in new
chrY	9911653	9911962	ENSG00000239225.1|TTTY23|lncRNA|chrY:9911653:9911962:+	0	+
#Deleted in new
chrY	993984	994365	ENSG00000237531.6_PAR_Y|AL672277.1|lncRNA|chrY:993984:994365:+	0	+