Flowcell  BC4WCWACXX
Run Start  2014-06-19
Read Length  50 single end
HiSeq Sequencing Kit Trueseq v3

Sequencer Software	HiSeq Control Software	2.0
Gerald version     1.8

Alignment Report:

Legend:
Total - total reads considered ( random 10% of total reads sequenced )
Total Unique - total reads aligning to only a single location in the reference
U0 - # of unique hits with 0 mismatches
U1 - # of unique hits with 1 mismatches
U2 - # of unique hits with 2 mismatches
R012 - # of hits aligning to multiple location in the reference with 0,1 or 2 mismatches
NM - # of reads without a match to the reference

Mapping Algorithm : GEM allowing up to 2 mismatches

Lane 6

Sample: K27
Index: CGATGT
Lab ID: 7299
Application: NebNext Ultra ChIP
Reference:  M.musculus (mm10)

Total	4364999
Total Unique	3298808	75.6%

U0	2998914	68.7%
U1	244087	5.6%
U2	55807	1.3%
R012	787246	18.0%
NM	215909	4.9%

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Lane 6

Sample: IgG
Index: CAGATC
Lab ID: 7300
Application: NebNext Ultra ChIP
Reference: M.musculus (mm10)

Total	5886751
Total Unique	4298195	73.0%

U0	3883165	66.0%
U1	335719	5.7%
U2	79311	1.3%
R012	1169905	19.9%
NM	298211	5.1%

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Lane 6

Sample: IN
Index: GTGAAA
Lab ID: 7301
Application: NebNext Ultra ChIP
Reference: M.musculus (mm10)

Total	7802128
Total Unique	6004190	77.0%

U0	5467925	70.1%
U1	439945	5.6%
U2	96320	1.2%
R012	1389314	17.8%
NM	284495	3.6%

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