Flowcell AC7Y8VACXX Run Start 2015-09-04 Read Length 50 single end HiSeq Sequencing Kit Trueseq v3 Sequencer Software HiSeq Control Software 2.2.58 Gerald version 1.8 Alignment Report: Legend: Total - total reads considered ( random 10% of total reads sequenced ) Total Unique - total reads aligning to only a single location in the reference U0 - # of unique hits with 0 mismatches U1 - # of unique hits with 1 mismatches U2 - # of unique hits with 2 mismatches R012 - # of hits aligning to multiple location in the reference with 0,1 or 2 mismatches NM - # of reads without a match to the reference Mapping Algorithm : GEM_1.7.1 (build 1.819 (beta)) allowing up to 2 mismatches Lane 123 Sample: bips 3 Index: ACAGTG Lab ID: 11371 Application: ChIP Seq Reference: M.musculus (GRCm38.dna) Total 9794147 Total Unique 6815940 69.6% U0 6117648 62.5% U1 559592 5.7% U2 138700 1.4% R012 1065690 10.9% NM 1408756 14.4% ------------------------------------------------ Lane 123 Sample: bips 20 Index: GCCAAT Lab ID: 11372 Application: ChIP Seq Reference: M.musculus (GRCm38.dna) Total 5921245 Total Unique 3995613 67.5% U0 3587693 60.6% U1 326455 5.5% U2 81465 1.4% R012 657380 11.1% NM 962685 16.3% ------------------------------------------------ Lane 123 Sample: mips 3 Index: CTTGTA Lab ID: 11373 Application: ChIP Seq Reference: M.musculus (GRCm38.dna) Total 5406288 Total Unique 3752286 69.4% U0 3365267 62.2% U1 309737 5.7% U2 77282 1.4% R012 580254 10.7% NM 792909 14.7% ------------------------------------------------ Lane 123 Sample: mips 20 Index: GTGAAA Lab ID: 11374 Application: ChIP Seq Reference: M.musculus (GRCm38.dna) Total 4869462 Total Unique 3363391 69.1% U0 3013182 61.9% U1 278917 5.7% U2 71292 1.5% R012 543223 11.2% NM 694542 14.3% ------------------------------------------------ Lane 123 Sample: moips 3 Index: AGTTCC Lab ID: 11375 Application: ChIP Seq Reference: M.musculus (GRCm38.dna) Total 5045715 Total Unique 3158807 62.6% U0 2823242 56.0% U1 267036 5.3% U2 68529 1.4% R012 545080 10.8% NM 1085011 21.5% ------------------------------------------------ Lane 123 Sample: moips 20 Index: CGATGT Lab ID: 11376 Application: ChIP Seq Reference: M.musculus (GRCm38.dna) Total 6038240 Total Unique 3894399 64.5% U0 3490779 57.8% U1 322435 5.3% U2 81185 1.3% R012 661243 11.0% NM 1176809 19.5% ------------------------------------------------ Lane 123 Sample: nips1 3 Index: TGACCA Lab ID: 11377 Application: ChIP Seq Reference: M.musculus (GRCm38.dna) Total 4977481 Total Unique 3232178 64.9% U0 2899518 58.3% U1 267996 5.4% U2 64664 1.3% R012 453883 9.1% NM 1074551 21.6% ------------------------------------------------ Lane 123 Sample: nips1 20 Index: CAGATC Lab ID: 11378 Application: ChIP Seq Reference: M.musculus (GRCm38.dna) Total 4871704 Total Unique 3382445 69.4% U0 3040072 62.4% U1 279879 5.7% U2 62494 1.3% R012 415652 8.5% NM 888170 18.2% ------------------------------------------------ Lane 123 Sample: nips2 3 Index: CCGTCC Lab ID: 11379 Application: ChIP Seq Reference: M.musculus (GRCm38.dna) Total 4505870 Total Unique 3143138 69.8% U0 2827373 62.7% U1 255903 5.7% U2 59862 1.3% R012 431717 9.6% NM 734342 16.3% ------------------------------------------------ Lane 123 Sample: nips2 20 Index: GTTTCG Lab ID: 11380 Application: ChIP Seq Reference: M.musculus (GRCm38.dna) Total 5989688 Total Unique 4160468 69.5% U0 3743948 62.5% U1 340398 5.7% U2 76122 1.3% R012 549292 9.2% NM 1039021 17.3% ------------------------------------------------